Chordata	ANCESTRAL SPECIES																	ENSGT00390000000672 #22
Vertebrata	DUPLICATION
Vertebrata	DUPLICATION
Vertebrata	ANCESTRAL SPECIES																	ENSGT00390000000672.a.b #22
Gnathostomata	ANCESTRAL SPECIES	448																ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #25	ENSGT00390000018086 #26	ENSGT00940000158144	ENSGT00940000159267	ENSGT00940000156102	ENSGT00390000017079
Euteleostomi	ANCESTRAL SPECIES	1	ENSGT00390000004985.a	ENSGT00660000097118	ENSGT00940000156031	ENSGT00940000158953	ENSGT00610000086112	ENSGT00940000165983	ENSGT00530000063907.c #10	ENSGT00940000157876 #11	ENSGT00940000155411.c #13	ENSGT00940000154880 #14	ENSGT00940000158711 #15	ENSGT01030000235264	ENSGT00390000017819 #17	ENSGT00940000157995 #18	ENSGT00940000157492.b #19	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #25	ENSGT00390000018086 #26	ENSGT00940000158144	ENSGT00940000159267	ENSGT00940000156102	ENSGT00390000017079	ENSGT00940000155186	ENSGT00390000000924	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C	ENSGT00950000182772.B.a.a	ENSGT00940000155679	ENSGT00550000074949
Sarcopterygii	ANCESTRAL SPECIES	1	ENSGT00660000097118	ENSGT00940000156031	ENSGT00940000158953	ENSGT00610000086112	ENSGT00940000165033	ENSGT00940000165983	ENSGT00530000063907.c #10	ENSGT00940000157876 #11	ENSGT00940000155411.c #13	ENSGT00940000154880 #14	ENSGT00940000158711 #15	ENSGT01030000235264	ENSGT00390000017819 #17	ENSGT00940000157995 #18	ENSGT00940000157492.b #19	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #25	ENSGT00390000018086 #26	ENSGT00940000158144	ENSGT00950000183173.E	ENSGT00940000159267	ENSGT00940000156102	ENSGT00390000017079	ENSGT00940000155186	ENSGT00390000000924	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C	ENSGT00950000182772.B.a.a	ENSGT00940000155679
Tetrapoda	ANCESTRAL SPECIES	2	ENSGT00940000156031	ENSGT00940000158953	ENSGT00610000086112	ENSGT00940000165033	ENSGT00940000165983	ENSGT00530000063907.c #10	ENSGT00940000157876 #11	ENSGT00940000155411.c #13	ENSGT00940000154880 #14	ENSGT00940000158711 #15	ENSGT01030000235264	ENSGT00390000017819 #17	ENSGT00940000157995 #18	ENSGT00940000157492.b #19	ENSGT01080000257332.A	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #25	ENSGT00390000018086 #26	ENSGT00940000158144	ENSGT00940000159267	ENSGT00940000156102	ENSGT00390000017079	ENSGT00940000158156	ENSGT00550000074784.b	ENSGT00940000155186	ENSGT00390000000924	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C	ENSGT00950000182772.B.a.a
Amniota	ANCESTRAL SPECIES	4	ENSGT00940000156031	ENSGT00940000158953	ENSGT00610000086112	ENSGT00940000165033	ENSGT00940000165983	ENSGT00530000063907.c #10	ENSGT00940000157876 #11	ENSGT00940000155411.c #13	ENSGT00940000154880 #14	ENSGT00940000158711 #15	ENSGT01030000235264	ENSGT00390000017819 #17	ENSGT00940000157995 #18	ENSGT00940000157492.b #19	ENSGT01080000257332.A	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #25	ENSGT00390000018086 #26	ENSGT00940000158144	ENSGT00940000159267	ENSGT00940000156102	ENSGT00390000017079	ENSGT00940000155186	ENSGT00940000158156	ENSGT00550000074784.b	ENSGT00960000186730	ENSGT00550000074784.a.a	ENSGT00390000000924	ENSGT00950000183049.A	ENSGT00940000160328
Mammalia	ANCESTRAL SPECIES	10	ENSGT00390000004985.a	ENSGT00940000156031	ENSGT00940000158953	ENSGT00610000086112	ENSGT00940000165033	ENSGT00940000165983	ENSGT00530000063907.c #10	ENSGT00940000157876 #11	ENSGT00940000155411.c #13	ENSGT00940000154880 #14	ENSGT00940000158711 #15	ENSGT01090000260129 #16	ENSGT00390000017819 #17	ENSGT00940000157995 #18	ENSGT00940000157492.b #19	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #25	ENSGT00390000018086 #26	ENSGT00940000158144	ENSGT00940000159267	ENSGT00940000156102	ENSGT00390000017079	ENSGT00940000155186	ENSGT00940000158156	ENSGT00550000074784.b	ENSGT00960000186730	ENSGT00550000074784.a.a	ENSGT00390000000924	ENSGT00950000183049.A	ENSGT00940000160328
Theria	ANCESTRAL SPECIES	11	ENSGT00390000004985.a	ENSGT00940000156031	ENSGT00940000158953	ENSGT00610000086112	ENSGT00940000165033	ENSGT00940000165983	ENSGT00530000063907.c #10	ENSGT00940000157876 #11	ENSGT00940000155411.c #13	ENSGT00940000154880 #14	ENSGT00940000158711 #15	ENSGT01090000260129 #16	ENSGT00390000017819 #17	ENSGT00940000157995 #18	ENSGT00940000157492.b #19	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #25	ENSGT00390000018086 #26	ENSGT00940000158144	ENSGT00940000159267	ENSGT00940000156102	ENSGT00390000017079	ENSGT00940000155186	ENSGT00940000158156	ENSGT00550000074784.b	ENSGT00960000186730	ENSGT00550000074784.a.a	ENSGT00390000000924	ENSGT00950000183049.A	ENSGT00940000160328
Eutheria	ANCESTRAL SPECIES	6	ENSGT00390000004985.a	ENSGT00940000156031	ENSGT00940000158953	ENSGT00940000165033	ENSGT00610000086112	ENSGT00940000165983	ENSGT00530000063907.c #10	ENSGT00940000157876 #11	ENSGT00940000155411.c #13	ENSGT00940000154880 #14	ENSGT00940000158711 #15	ENSGT01090000260129 #16	ENSGT00390000017819 #17	ENSGT00940000157995 #18	ENSGT00940000157492.b #19	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #25	ENSGT00390000018086 #26	ENSGT00940000158144	ENSGT00940000159267	ENSGT00940000156102	ENSGT00390000017079	ENSGT00940000155186	ENSGT00940000158156	ENSGT00550000074784.a.a	ENSGT00390000000924	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C	ENSGT00950000182772.B.a.a
Boreoeutheria	ANCESTRAL SPECIES	9	ENSGT00940000158953	ENSGT00940000165033	ENSGT00610000086112	ENSGT00940000165983	ENSGT00530000063907.c #10	ENSGT00940000164293	ENSGT00940000157876 #11	ENSGT00940000155411.c #13	ENSGT00940000154880 #14	ENSGT00940000158711 #15	ENSGT01090000260129 #16	ENSGT00390000017819 #17	ENSGT00940000157995 #18	ENSGT00940000157492.b #19	ENSGT00910000147866	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #25	ENSGT00390000018086 #26	ENSGT00940000158144	ENSGT00940000159267	ENSGT00940000156102	ENSGT00390000017079	ENSGT00940000155186	ENSGT00940000158156	ENSGT00550000074784.a.a	ENSGT01030000234916	ENSGT00550000074784.a.b	ENSGT00960000186730	ENSGT00550000074784.b	ENSGT00390000000924
Euarchontoglires	ANCESTRAL SPECIES	8	ENSGT00940000158953	ENSGT00940000165033	ENSGT00390000006564	ENSGT00610000086112	ENSGT00530000063907.c #10	ENSGT00940000164293	ENSGT00940000157876 #11	ENSGT00940000155411.c #13	ENSGT00940000154880 #14	ENSGT00940000158711 #15	ENSGT01090000260129 #16	ENSGT00390000017819 #17	ENSGT00940000157995 #18	ENSGT00940000157492.b #19	ENSGT00910000147866	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #25	ENSGT00390000018086 #26	ENSGT00940000158144	ENSGT00940000159267	ENSGT00940000156102	ENSGT00390000017079	ENSGT00940000155186	ENSGT00940000158156	ENSGT00550000074784.a.a	ENSGT01100000263873	ENSGT00960000186730	ENSGT00550000074784.b	ENSGT00390000000924	ENSGT00950000183049.A
Primates	ANCESTRAL SPECIES	8	ENSGT00940000165033	ENSGT00390000006564	ENSGT00610000086112	ENSGT00530000063907.c #10	ENSGT00940000164293	ENSGT00940000157876 #11	ENSGT00910000147795 #12	ENSGT00940000155411.c #13	ENSGT00940000154880 #14	ENSGT00940000158711 #15	ENSGT01090000260129 #16	ENSGT00390000017819 #17	ENSGT00940000157995 #18	ENSGT00940000157492.b #19	ENSGT00910000147866	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #25	ENSGT00390000018086 #26	ENSGT00910000147325 #27	ENSGT00940000158144	ENSGT00940000159267	ENSGT00940000156102	ENSGT00390000017079	ENSGT00940000155186	ENSGT00940000158156	ENSGT00550000074784.a.a	ENSGT01100000263873	ENSGT00550000074784.b	ENSGT00390000000924	ENSGT00950000183049.A
Strepsirrhini	ANCESTRAL SPECIES	5	ENSGT00390000016407	ENSGT00390000004985.a	ENSGT00940000156031	ENSGT00940000158953	ENSGT00610000086112	ENSGT00530000063907.c #10	ENSGT00940000157876 #11	ENSGT00910000147795 #12	ENSGT00940000155411.c #13	ENSGT00940000154880 #14	ENSGT00940000158711 #15	ENSGT01090000260129 #16	ENSGT00390000017819 #17	ENSGT00940000157995 #18	ENSGT00940000157492.b #19	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #25	ENSGT00390000018086 #26	ENSGT00940000158144	ENSGT00940000159267	ENSGT00940000156102	ENSGT00390000017079	ENSGT00940000155186	ENSGT00940000158156	ENSGT00550000074784.a.a	ENSGT01100000263873	ENSGT00550000074784.b	ENSGT00390000000924	ENSGT00950000183049.A	ENSGT00940000160328
Lemuriformes	ANCESTRAL SPECIES	65	ENSGT00390000004985.a	ENSGT00940000156031	ENSGT00940000158953	ENSGT00610000086112	ENSGT00530000063907.c #10	ENSGT00940000157876 #11	ENSGT00910000147795 #12	ENSGT00940000155411.c #13	ENSGT00940000154880.xb #14	ENSGT00940000154880.yb ##14	ENSGT00940000158711 #15	ENSGT01090000260129 #16	ENSGT00390000017819 #17	ENSGT00940000157995 #18	ENSGT00940000157492.b #19	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #25	ENSGT00390000018086 #26	ENSGT00910000147325 #27
Lemuriformes_a	ANCESTRAL SPECIES	128	ENSGT00940000156031	ENSGT00940000158953	ENSGT00610000086112	ENSGT00530000063907.c #10	ENSGT00940000157876 #11	ENSGT00910000147795 #12	ENSGT00940000155411.c #13	ENSGT00940000154880.xb #14	ENSGT00940000154880.yb ##14	ENSGT00940000158711 #15	ENSGT01090000260129 #16	ENSGT00390000017819 #17	ENSGT00940000157995 #18	ENSGT00940000157492.b #19	ENSGT00910000148301 #20	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #25	ENSGT00390000018086 #26	ENSGT00910000147325 #27
Greater bamboo lemur	MODERN SPECIES	442	PRMT9 (ENSPSMG00000025116) #7	ARHGAP10 (ENSPSMG00000025109) #8	NR3C2 (ENSPSMG00000025077) #9	FAM172A (ENSPSMG00000025037) #10	NR2F1 (ENSPSMG00000025005) #11	ENSPSMG00000024994 #12	ARRDC3 (ENSPSMG00000024984) #13	ADGRV1 (ENSPSMG00000024970) #14	LYSMD3 (ENSPSMG00000024935) #15	ENSPSMG00000024930 #16	MBLAC2 (ENSPSMG00000024924) #17	CETN3 (ENSPSMG00000024919) #18	MEF2C (ENSPSMG00000024852) #19	ENSPSMG00000024714 #20	ENSPSMG00000024703 #21	TMEM161B (ENSPSMG00000024693) #22	CCNH (ENSPSMG00000024642) #23	ENSPSMG00000024615 #24	RASA1 (ENSPSMG00000024559) #25	COX7C (ENSPSMG00000024426) #26	ENSPSMG00000024419 #27	ENSPSMG00000024417 #28
Coquerels sifaka	MODERN SPECIES	319	SLF1 (ENSPCOG00000019438)	KIAA0825 (ENSPCOG00000021681)	FAM172A (ENSPCOG00000024072) #10	NR2F1 (ENSPCOG00000017525) #11	ENSPCOG00000028394	ENSPCOG00000019606	ARRDC3 (ENSPCOG00000017963) #13	ENSPCOG00000026419 ##14	ENSPCOG00000016607 ##14	LYSMD3 (ENSPCOG00000009535) #15	ENSPCOG00000023427	MBLAC2 (ENSPCOG00000024583) #17	CETN3 (ENSPCOG00000008573) #18	MEF2C (ENSPCOG00000015854) #19	ENSPCOG00000019704	TMEM161B (ENSPCOG00000014869) #22	RASA1 (ENSPCOG00000002214) #25	ENSPCOG00000024010 #26
Mouse lemur	MODERN SPECIES	3	FAM81B (ENSMICG00000006677)	MCTP1 (ENSMICG00000006657)	SLF1 (ENSMICG00000001017)	KIAA0825 (ENSMICG00000000340)	ENSMICG00000046930	FAM172A (ENSMICG00000030403) #10	NR2F1 (ENSMICG00000005642) #11	ARRDC3 (ENSMICG00000005415) #13	ENSMICG00000045296 #14	ENSMICG00000010440 ##14	LYSMD3 (ENSMICG00000029640) #15	ENSMICG00000038307 #16	MBLAC2 (ENSMICG00000031053) #17	ENSMICG00000010705 #18	MEF2C (ENSMICG00000034356) #19	TMEM161B (ENSMICG00000028658) #22	CCNH (ENSMICG00000009500) #23	RASA1 (ENSMICG00000009491) #25	EFNA5 (ENSMICG00000026448)	FBXL17 (ENSMICG00000031242)	FER (ENSMICG00000002614)	PJA2 (ENSMICG00000002616)	MAN2A1 (ENSMICG00000015033)	ENSMICG00000013901	TMEM232 (ENSMICG00000004950)	ENSMICG00000037995	TSLP (ENSMICG00000000642)	WDR36 (ENSMICG00000000645)	CAMK4 (ENSMICG00000028198)	C5orf34 (ENSMICG00000008192)	TMEM267 (ENSMICG00000006817)
Bushbaby	MODERN SPECIES	132	FAM81B (ENSOGAG00000004107)	MCTP1 (ENSOGAG00000004102)	SLF1 (ENSOGAG00000004098)	KIAA0825 (ENSOGAG00000004093)	FAM172A (ENSOGAG00000015189) #10	NR2F1 (ENSOGAG00000007017) #11	ENSOGAG00000026077	ARRDC3 (ENSOGAG00000003067) #13	ADGRV1 (ENSOGAG00000012173) #14	LYSMD3 (ENSOGAG00000005564) #15	ENSOGAG00000005560	MBLAC2 (ENSOGAG00000005559) #17	CETN3 (ENSOGAG00000002383) #18	MEF2C (ENSOGAG00000028682) #19	ENSOGAG00000034873	TMEM161B (ENSOGAG00000009547) #22	ENSOGAG00000031737	ENSOGAG00000027160	CCNH (ENSOGAG00000010421) #23	RASA1 (ENSOGAG00000000055) #25	ENSOGAG00000029577	ENSOGAG00000032711	EDIL3 (ENSOGAG00000015620)	HAPLN1 (ENSOGAG00000009053)	VCAN (ENSOGAG00000034403)	XRCC4 (ENSOGAG00000009045)	TMEM167A (ENSOGAG00000009040)	ENSOGAG00000008165	ENSOGAG00000008163	ATG10 (ENSOGAG00000008161)	SSBP2 (ENSOGAG00000002548)
Haplorrhini	ANCESTRAL SPECIES	4	ENSGT00390000006564	ENSGT00610000086112	ENSGT00530000063907.c #10	ENSGT00940000164293	ENSGT00940000157876 #11	ENSGT00910000147795 #12	ENSGT00940000155411.c #13	ENSGT00940000154880 #14	ENSGT00940000158711 #15	ENSGT01090000262760	ENSGT01030000235264	ENSGT00390000017819 #17	ENSGT00940000157995 #18	ENSGT00940000157492.b #19	ENSGT00910000147866	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #25	ENSGT00390000018086 #26	ENSGT00910000147325 #27	ENSGT00940000158144	ENSGT00940000159267	ENSGT00940000156102	ENSGT00390000017079	ENSGT00940000155186	ENSGT00940000158156	ENSGT00550000074784.a.a	ENSGT00390000000924	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C
Tarsier	MODERN SPECIES	1561															MEF2C (ENSTSYG00000003647) #19	TMEM161B (ENSTSYG00000001394) #22
Simiiformes	ANCESTRAL SPECIES	6	ENSGT00390000006564	ENSGT00610000086112	ENSGT00530000063907.c #10	ENSGT00940000164293	ENSGT00940000157876 #11	ENSGT00910000147795 #12	ENSGT00940000155411.c #13	ENSGT00910000146984	ENSGT00940000154880 #14	ENSGT00940000158711 #15	ENSGT00940000164875	ENSGT00390000017819 #17	ENSGT00940000157995 #18	ENSGT00940000157492.b #19	ENSGT00910000147866	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #25	ENSGT00390000018086 #26	ENSGT00910000147325 #27	ENSGT00940000158144	ENSGT00940000159267	ENSGT00910000147249	ENSGT00940000156102	ENSGT00390000017079	ENSGT00940000155186	ENSGT00940000158156	ENSGT00550000074784.a.a	ENSGT00390000000924	ENSGT00950000183049.A	ENSGT00940000160328
Platyrrhini	ANCESTRAL SPECIES	7	ENSGT00940000158953	ENSGT00390000006564	ENSGT00610000086112	ENSGT00530000063907.c #10	ENSGT00390000003924.r	ENSGT00940000157876 #11	ENSGT00940000155411.c #13	ENSGT00910000146984	ENSGT00940000154880 #14	ENSGT00940000158711 #15	ENSGT00940000164875	ENSGT00390000017819 #17	ENSGT00940000157995 #18	ENSGT00940000157492.b #19	ENSGT00910000147866	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #25	ENSGT00390000018086.q.b #26	ENSGT00940000158144	ENSGT00940000159267	ENSGT00910000147249	ENSGT00940000156102	ENSGT00390000017079	ENSGT00940000155186	ENSGT00940000158156	ENSGT00550000074784.a.a	ENSGT00390000000924	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C.c.a
Mas night monkey	MODERN SPECIES	992	KIAA0825 (ENSANAG00000025687)	FAM172A (ENSANAG00000035869) #10	ENSANAG00000035483	NR2F1 (ENSANAG00000031992) #11	ENSANAG00000024012	ENSANAG00000033833	ENSANAG00000030581	ARRDC3 (ENSANAG00000025287) #13	ADGRV1 (ENSANAG00000015354) #14	LYSMD3 (ENSANAG00000026299) #15	POLR3G (ENSANAG00000005030)	MBLAC2 (ENSANAG00000025030) #17	CETN3 (ENSANAG00000023255) #18	MEF2C (ENSANAG00000037478) #19	ENSANAG00000019321	TMEM161B (ENSANAG00000027071) #22	CCNH (ENSANAG00000037104) #23	RASA1 (ENSANAG00000029874) #25	COX7C (ENSANAG00000030476) #26	EDIL3 (ENSANAG00000024200)	HAPLN1 (ENSANAG00000036107)	VCAN (ENSANAG00000027105)	XRCC4 (ENSANAG00000032084)	TMEM167A (ENSANAG00000036200)	ENSANAG00000035867	ENSANAG00000027961	ENSANAG00000033330	RPS23 (ENSANAG00000019218)	ATG10 (ENSANAG00000029651)	SSBP2 (ENSANAG00000021537)	ACOT12 (ENSANAG00000032859)
Cebidae	ANCESTRAL SPECIES	6	ENSGT00940000156031	ENSGT00940000158953	ENSGT00390000006564	ENSGT00610000086112	ENSGT00530000063907.c #10	ENSGT00390000003924.r	ENSGT00940000157876 #11	ENSGT00940000155411.c #13	ENSGT00910000146984	ENSGT00940000154880 #14	ENSGT00940000158711 #15	ENSGT00940000164875	ENSGT00390000017819 #17	ENSGT00940000157995 #18	ENSGT00940000157492.b #19	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #25	ENSGT00390000018086.q.b #26	ENSGT00940000158144	ENSGT00940000159267	ENSGT00910000147249	ENSGT00940000156102	ENSGT00390000017079	ENSGT00940000155186	ENSGT00940000158156	ENSGT00550000074784.a.a	ENSGT00390000000924	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C.c.a
Marmoset	MODERN SPECIES	11	ENSCJAG00000086719	KIAA0825 (ENSCJAG00000010418)	FAM172A (ENSCJAG00000010444) #10	NR2F1 (ENSCJAG00000010492) #11	ENSCJAG00000072601	ENSCJAG00000085926	ENSCJAG00000078673	ARRDC3 (ENSCJAG00000010525) #13	ADGRV1 (ENSCJAG00000010578) #14	LYSMD3 (ENSCJAG00000066019) #15	ENSCJAG00000010747	MBLAC2 (ENSCJAG00000039786) #17	CETN3 (ENSCJAG00000010761) #18	MEF2C (ENSCJAG00000010799) #19	ENSCJAG00000084377	TMEM161B (ENSCJAG00000041282) #22	CCNH (ENSCJAG00000010902) #23	RASA1 (ENSCJAG00000010941) #25	ENSCJAG00000087022 #26	ENSCJAG00000083390	ENSCJAG00000072368	ENSCJAG00000073835	EDIL3 (ENSCJAG00000040007)	ENSCJAG00000077518	ENSCJAG00000085055	HAPLN1 (ENSCJAG00000063471)	ENSCJAG00000078201	VCAN (ENSCJAG00000011161)	XRCC4 (ENSCJAG00000011227)	ENSCJAG00000077051	ENSCJAG00000042632
Cebidae_a	ANCESTRAL SPECIES	3	ENSGT00940000156031	ENSGT00940000158953	ENSGT00390000006564	ENSGT00610000086112	ENSGT00530000063907.c #10	ENSGT00390000003924.r	ENSGT00940000157876 #11	ENSGT00940000155411.c #13	ENSGT00910000146984	ENSGT00940000154880 #14	ENSGT00940000158711 #15	ENSGT00940000164875	ENSGT00390000017819 #17	ENSGT00940000157995 #18	ENSGT00940000157492.b #19	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #25	ENSGT00390000018086.q.b #26	ENSGT00940000158144	ENSGT00940000159267	ENSGT00910000147249	ENSGT00940000156102	ENSGT00390000017079	ENSGT00940000155186	ENSGT01100000266943	ENSGT00940000161999.t.a.a.b.b.a	ENSGT00940000158156	ENSGT00550000074784.a.a	ENSGT00390000000924	ENSGT00950000183049.A
Capuchin	MODERN SPECIES	16							ARRDC3 (ENSCCAG00000037612) #13	ENSCCAG00000034004	ADGRV1 (ENSCCAG00000034134) #14	LYSMD3 (ENSCCAG00000032472) #15	POLR3G (ENSCCAG00000032288)	MBLAC2 (ENSCCAG00000027096) #17	CETN3 (ENSCCAG00000021491) #18	ENSCCAG00000030581	MEF2C (ENSCCAG00000015818) #19	TMEM161B (ENSCCAG00000025610) #22	ENSCCAG00000033383	CCNH (ENSCCAG00000031898) #23	RASA1 (ENSCCAG00000027537) #25	ENSCCAG00000012037	ENSCCAG00000034902	COX7C (ENSCCAG00000021409) #26	ENSCCAG00000036566	EDIL3 (ENSCCAG00000010698)	HAPLN1 (ENSCCAG00000023370)	ENSCCAG00000029740	VCAN (ENSCCAG00000026158)	XRCC4 (ENSCCAG00000021185)	TMEM167A (ENSCCAG00000021704)	ENSCCAG00000035743	ENSCCAG00000037444
Bolivian squirrel monkey	DUPLICATION
Bolivian squirrel monkey	MODERN SPECIES	43	SLF1 (ENSSBOG00000025909)	ENSSBOG00000019818	KIAA0825 (ENSSBOG00000032086)	FAM172A (ENSSBOG00000019860) #10	ENSSBOG00000034164	NR2F1 (ENSSBOG00000021749) #11	ARRDC3 (ENSSBOG00000022253) #13	ADGRV1 (ENSSBOG00000031018) #14	LYSMD3 (ENSSBOG00000036033) #15	ENSSBOG00000029447	MBLAC2 (ENSSBOG00000022218) #17	CETN3 (ENSSBOG00000033177) #18	MEF2C (ENSSBOG00000018897) #19	ENSSBOG00000031181	ENSSBOG00000019037	TMEM161B (ENSSBOG00000024706) #22	ENSSBOG00000028202	CCNH (ENSSBOG00000019490) #23	RASA1 (ENSSBOG00000024025) #25	COX7C (ENSSBOG00000023483) #26	ENSSBOG00000022503	EDIL3 (ENSSBOG00000034196)	HAPLN1 (ENSSBOG00000020151)	VCAN (ENSSBOG00000030525)	XRCC4 (ENSSBOG00000033444)	TMEM167A (ENSSBOG00000031099)	ENSSBOG00000033727	ENSSBOG00000035740	ENSSBOG00000034795	ENSSBOG00000025673	ENSSBOG00000019560
Bolivian squirrel monkey	MODERN SPECIES	42	RASL11A (ENSSBOG00000025363)	ENSSBOG00000031441	ENSSBOG00000023626	GPR12 (ENSSBOG00000015914)	WASF3 (ENSSBOG00000025202)	CDK8 (ENSSBOG00000031790)	RNF6 (ENSSBOG00000022531)	SHISA2 (ENSSBOG00000010466)	ATP8A2 (ENSSBOG00000019269)	NUP58 (ENSSBOG00000026929)	MTMR6 (ENSSBOG00000028806)	AMER2 (ENSSBOG00000031615)	ENSSBOG00000023677	CENPJ (ENSSBOG00000025606)	RNF17 (ENSSBOG00000021661)	ENSSBOG00000033552 #22	ATP12A (ENSSBOG00000020405)	TEKT4 (ENSSBOG00000034878)	ENSSBOG00000031599	ANKRD20A1 (ENSSBOG00000029403)	SPATA13 (ENSSBOG00000026058)	ENSSBOG00000034652	ENSSBOG00000025239	MIPEP (ENSSBOG00000033812)	TNFRSF19 (ENSSBOG00000022185)	ENSSBOG00000033586	ENSSBOG00000035620	SACS (ENSSBOG00000035759)	SGCG (ENSSBOG00000029754)	FGF9 (ENSSBOG00000003885)	MICU2 (ENSSBOG00000019033)
Catarrhini	DUPLICATION
Catarrhini	DUPLICATION
Catarrhini	ANCESTRAL SPECIES	7	ENSGT00940000158953	ENSGT00390000006564	ENSGT00610000086112	ENSGT00530000063907.c #10	ENSGT00940000164293	ENSGT00940000157876 #11	ENSGT00910000147795 #12	ENSGT00940000155411.c #13	ENSGT00910000146984	ENSGT00940000154880 #14	ENSGT00940000158711 #15	ENSGT00940000164875	ENSGT00390000017819 #17	ENSGT00940000157995 #18	ENSGT00940000157492.b #19	ENSGT00390000000672.a.b.e.a #22	ENSGT00390000008634 #23	ENSGT00940000155846 #25	ENSGT00390000018086 #26	ENSGT00910000147325 #27	ENSGT00940000158144	ENSGT00940000159267	ENSGT00940000156102	ENSGT00910000147249	ENSGT00390000017079	ENSGT00940000155186	ENSGT00940000158156	ENSGT00550000074784.a.a	ENSGT00390000000924	ENSGT00950000183049.A	ENSGT00940000160328
Hominoidea	ANCESTRAL SPECIES	8	ENSGT00390000006564	ENSGT00610000086112	ENSGT00940000164293	ENSGT00530000063907.c #10	ENSGT00940000157876 #11	ENSGT00910000147795 #12	ENSGT00940000155411.c #13	ENSGT00910000146984	ENSGT00390000007473.h	ENSGT00940000154880 #14	ENSGT00940000158711 #15	ENSGT00940000164875	ENSGT00390000017819 #17	ENSGT00940000157995 #18	ENSGT00940000157492.b #19	ENSGT00390000000672.a.b.e.a #22	ENSGT00390000008634 #23	ENSGT00940000155846 #25	ENSGT00390000018086.n #26	ENSGT00940000158144	ENSGT00940000159267	ENSGT00940000156102	ENSGT00910000147249	ENSGT00390000017079	ENSGT00940000155186	ENSGT00940000158156	ENSGT00550000074784.a.a	ENSGT00390000000924	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C.c.a
Gibbon	MODERN SPECIES	11	SLF1 (ENSNLEG00000013948)	KIAA0825 (ENSNLEG00000013928)	FAM172A (ENSNLEG00000013903) #10	NR2F1 (ENSNLEG00000013901) #11	ENSNLEG00000033731	ARRDC3 (ENSNLEG00000013887) #13	ENSNLEG00000033643	ENSNLEG00000034584	ADGRV1 (ENSNLEG00000013776) #14	LYSMD3 (ENSNLEG00000013761) #15	ENSNLEG00000032117	POLR3G (ENSNLEG00000034746)	MBLAC2 (ENSNLEG00000013746) #17	CETN3 (ENSNLEG00000027875) #18	MEF2C (ENSNLEG00000013673) #19	TMEM161B (ENSNLEG00000013645) #22	CCNH (ENSNLEG00000013604) #23	RASA1 (ENSNLEG00000013467) #25	ENSNLEG00000033043	ENSNLEG00000027612 #26	ENSNLEG00000013459	ENSNLEG00000032525 #27	EDIL3 (ENSNLEG00000013418)	ENSNLEG00000035592	HAPLN1 (ENSNLEG00000013393)	VCAN (ENSNLEG00000013300)	ENSNLEG00000032670	XRCC4 (ENSNLEG00000013239)	TMEM167A (ENSNLEG00000013231)	ENSNLEG00000027406	ENSNLEG00000013214
Hominidae	ANCESTRAL SPECIES	7	ENSGT00390000006564	ENSGT00610000086112	ENSGT00940000164293	ENSGT00530000063907.c #10	ENSGT00940000157876 #11	ENSGT00910000147795 #12	ENSGT00940000155411.c #13	ENSGT00910000146984	ENSGT00390000007473.h	ENSGT00940000154880 #14	ENSGT00940000158711 #15	ENSGT00940000164875	ENSGT00390000017819 #17	ENSGT00940000157995 #18	ENSGT00940000157492.b #19	ENSGT00390000000672.a.b.e.a #22	ENSGT00390000008634 #23	ENSGT00940000155846 #25	ENSGT00390000018086.n #26	ENSGT00940000158144	ENSGT00940000159267	ENSGT00940000156102	ENSGT00910000147249	ENSGT00390000017079	ENSGT00940000155186	ENSGT00940000158156	ENSGT00550000074784.a.a	ENSGT00390000000924	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C.c.a
Orangutan	MODERN SPECIES	18	FAM81B (ENSPPYG00000015637)	MCTP1 (ENSPPYG00000015636)	SLF1 (ENSPPYG00000015634)	KIAA0825 (ENSPPYG00000015633)	FAM172A (ENSPPYG00000015631) #10	NR2F1 (ENSPPYG00000015629) #11	ENSPPYG00000031067 #12	ARRDC3 (ENSPPYG00000015628) #13	ENSPPYG00000015627	ADGRV1 (ENSPPYG00000015626) #14	ENSPPYG00000031868 #15	POLR3G (ENSPPYG00000015624)	MBLAC2 (ENSPPYG00000033594) #17	CETN3 (ENSPPYG00000015622) #18	MEF2C (ENSPPYG00000033322) #19	TMEM161B (ENSPPYG00000015620) #22	CCNH (ENSPPYG00000015619) #23	RASA1 (ENSPPYG00000015618) #25	ENSPPYG00000030583	COX7C (ENSPPYG00000015616) #26	EDIL3 (ENSPPYG00000015615)	HAPLN1 (ENSPPYG00000015614)	VCAN (ENSPPYG00000015613)	XRCC4 (ENSPPYG00000015612)	TMEM167A (ENSPPYG00000031892)	ENSPPYG00000015609	RPS23 (ENSPPYG00000030974)	ATG10 (ENSPPYG00000015607)	SSBP2 (ENSPPYG00000015606)	ENSPPYG00000015605	ZCCHC9 (ENSPPYG00000015604)
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	7	ENSGT00390000006564	ENSGT00610000086112	ENSGT00940000164293	ENSGT00530000063907.c #10	ENSGT00940000153052.c.b.a.a.a.a.b.b.a.a.a	ENSGT00940000157876 #11	ENSGT00940000155411.c #13	ENSGT00910000146984	ENSGT00390000007473.h	ENSGT00940000154880 #14	ENSGT00940000158711 #15	ENSGT00940000164875	ENSGT00390000017819 #17	ENSGT00940000157995 #18	ENSGT00940000157492.b #19	ENSGT00390000000672.a.b.e.a #22	ENSGT00390000008634 #23	ENSGT00940000155846 #25	ENSGT00390000018086.n.a.a #26	ENSGT00390000018509.a.n.b	ENSGT00390000018086.n.b #26	ENSGT00940000158144	ENSGT00940000159267	ENSGT00940000156102	ENSGT00910000147249	ENSGT00390000017079	ENSGT00940000155186	ENSGT00940000158156	ENSGT00550000074784.a.a	ENSGT00390000000924	ENSGT00950000183049.A
Gorilla	MODERN SPECIES	18	KIAA0825 (ENSGGOG00000003363)	ENSGGOG00000027925	FAM172A (ENSGGOG00000010296) #10	ENSGGOG00000011470 #11	ENSGGOG00000024153	ENSGGOG00000043080	ARRDC3 (ENSGGOG00000004294) #13	ENSGGOG00000025546	ENSGGOG00000043133	ADGRV1 (ENSGGOG00000010968) #14	LYSMD3 (ENSGGOG00000043192) #15	POLR3G (ENSGGOG00000000266)	MBLAC2 (ENSGGOG00000002845) #17	CETN3 (ENSGGOG00000009598) #18	MEF2C (ENSGGOG00000002856) #19	TMEM161B (ENSGGOG00000005684) #22	CCNH (ENSGGOG00000005172) #23	RASA1 (ENSGGOG00000001591) #25	ENSGGOG00000036539	COX7C (ENSGGOG00000012393) #26	ENSGGOG00000028128	EDIL3 (ENSGGOG00000025465)	ENSGGOG00000043369	HAPLN1 (ENSGGOG00000028491)	VCAN (ENSGGOG00000016068)	ENSGGOG00000040035	XRCC4 (ENSGGOG00000005197)	TMEM167A (ENSGGOG00000042218)	ENSGGOG00000013925	RPS23 (ENSGGOG00000025014)	ENSGGOG00000026751
Homo/Pan group	ANCESTRAL SPECIES	8	ENSGT00940000158953	ENSGT00390000006564	ENSGT00610000086112	ENSGT00940000164293	ENSGT00530000063907.c #10	ENSGT00940000153052.c.b.a.a.a.a.b.b.a.a.a	ENSGT00940000157876 #11	ENSGT00940000155411.c #13	ENSGT00910000146984	ENSGT00940000154880 #14	ENSGT00940000158711 #15	ENSGT00940000164875	ENSGT00390000017819 #17	ENSGT00940000157995 #18	ENSGT00940000157492.b #19	ENSGT00390000000672.a.b.e.a #22	ENSGT00390000008634 #23	ENSGT00940000155846 #25	ENSGT00390000018086.n.a.a #26	ENSGT00390000018509.a.n.b	ENSGT00390000018086.n.b #26	ENSGT00940000158144	ENSGT00940000159267	ENSGT00940000156102	ENSGT00910000147249	ENSGT00390000017079	ENSGT00940000155186	ENSGT00940000158156	ENSGT00550000074784.a.a	ENSGT00390000000924	ENSGT00950000183049.A
Human	MODERN SPECIES	17	SKIC3 (ENSG00000198677)	FAM81B (ENSG00000153347)	MCTP1 (ENSG00000175471)	SLF1 (ENSG00000133302)	KIAA0825 (ENSG00000185261)	POU5F2 (ENSG00000248483)	FAM172A (ENSG00000113391) #10	NR2F1 (ENSG00000175745) #11	ARRDC3 (ENSG00000113369) #13	ADGRV1 (ENSG00000164199) #14	LYSMD3 (ENSG00000176018) #15	POLR3G (ENSG00000113356)	MBLAC2 (ENSG00000176055) #17	CETN3 (ENSG00000153140) #18	MEF2C (ENSG00000081189) #19	TMEM161B (ENSG00000164180) #22	CCNH (ENSG00000134480) #23	RASA1 (ENSG00000145715) #25	COX7C (ENSG00000127184) #26	EDIL3 (ENSG00000164176)	HAPLN1 (ENSG00000145681)	VCAN (ENSG00000038427)	XRCC4 (ENSG00000152422)	TMEM167A (ENSG00000174695)	RPS23 (ENSG00000186468)	ATG10 (ENSG00000152348)	SSBP2 (ENSG00000145687)	ACOT12 (ENSG00000172497)	ZCCHC9 (ENSG00000131732)	CKMT2 (ENSG00000131730)	RASGRF2 (ENSG00000113319)
Pan	ANCESTRAL SPECIES	21	ENSGT00390000006564	ENSGT00610000086112	ENSGT00530000063907.c #10	ENSGT00940000164293	ENSGT00940000153052.c.b.a.a.a.a.b.b.a.a.a	ENSGT00940000157876 #11	ENSGT00940000155411.c #13	ENSGT00910000146984	ENSGT00940000154880 #14	ENSGT00940000154276.hb.a.e.b.b	ENSGT00940000158711 #15	ENSGT00940000164875	ENSGT00390000017819 #17	ENSGT00940000157995 #18	ENSGT00940000157492.b #19	ENSGT00390000000672.a.b.e.a #22	ENSGT00390000008634 #23	ENSGT00940000155846 #25	ENSGT00390000018086.n.a.a #26	ENSGT00390000018509.a.n.b	ENSGT00940000158144	ENSGT00940000159267	ENSGT00940000156102	ENSGT00910000147249	ENSGT00390000017079	ENSGT00940000155186	ENSGT00940000158156	ENSGT00550000074784.a.a	ENSGT00390000000924	ENSGT00950000183087.A.a.b.b.g.f	ENSGT00950000183049.A
Bonobo	MODERN SPECIES	18	ENSPPAG00000043061	KIAA0825 (ENSPPAG00000029168)	FAM172A (ENSPPAG00000030542) #10	POU5F2 (ENSPPAG00000014596)	ENSPPAG00000042574	NR2F1 (ENSPPAG00000029692) #11	ARRDC3 (ENSPPAG00000034772) #13	ENSPPAG00000024964	ADGRV1 (ENSPPAG00000034954) #14	ENSPPAG00000035937	LYSMD3 (ENSPPAG00000036100) #15	POLR3G (ENSPPAG00000038891)	MBLAC2 (ENSPPAG00000030673) #17	CETN3 (ENSPPAG00000042285) #18	MEF2C (ENSPPAG00000039315) #19	TMEM161B (ENSPPAG00000034458) #22	CCNH (ENSPPAG00000034768) #23	RASA1 (ENSPPAG00000031210) #25	ENSPPAG00000033965 #26	ENSPPAG00000028873	EDIL3 (ENSPPAG00000034784)	HAPLN1 (ENSPPAG00000037621)	VCAN (ENSPPAG00000026050)	ENSPPAG00000015511	XRCC4 (ENSPPAG00000040322)	TMEM167A (ENSPPAG00000043917)	ENSPPAG00000038667	RPS23 (ENSPPAG00000043006)	ATG10 (ENSPPAG00000033287)	ENSPPAG00000004621	ENSPPAG00000039772
Chimpanzee	MODERN SPECIES	18	SLF1 (ENSPTRG00000017079)	ENSPTRG00000051147	KIAA0825 (ENSPTRG00000023210)	FAM172A (ENSPTRG00000017074) #10	ENSPTRG00000046378	NR2F1 (ENSPTRG00000017073) #11	ARRDC3 (ENSPTRG00000017072) #13	ENSPTRG00000052572	ADGRV1 (ENSPTRG00000017070) #14	ENSPTRG00000052859	LYSMD3 (ENSPTRG00000017069) #15	POLR3G (ENSPTRG00000017068)	MBLAC2 (ENSPTRG00000017067) #17	CETN3 (ENSPTRG00000017066) #18	MEF2C (ENSPTRG00000024214) #19	TMEM161B (ENSPTRG00000017064) #22	CCNH (ENSPTRG00000017063) #23	RASA1 (ENSPTRG00000017062) #25	COX7C (ENSPTRG00000048661) #26	ENSPTRG00000001027	ENSPTRG00000046359	EDIL3 (ENSPTRG00000017057)	HAPLN1 (ENSPTRG00000017056)	VCAN (ENSPTRG00000017055)	ENSPTRG00000045929	XRCC4 (ENSPTRG00000017054)	ENSPTRG00000044846	TMEM167A (ENSPTRG00000044250)	ATP6AP1L (ENSPTRG00000050446)	RPS23 (ENSPTRG00000017052)	ATG10 (ENSPTRG00000017050)
Cercopithecidae	ANCESTRAL SPECIES	5	ENSGT00940000158953	ENSGT00390000006564	ENSGT00610000086112	ENSGT00530000063907.c #10	ENSGT00940000164293	ENSGT00940000157876 #11	ENSGT00910000147795 #12	ENSGT00940000155411.c #13	ENSGT00910000146984	ENSGT00940000154880 #14	ENSGT00940000158711 #15	ENSGT00940000164875	ENSGT00390000017819 #17	ENSGT00940000157995 #18	ENSGT00940000157492.b #19	ENSGT00390000000672.a.b.e.a #22	ENSGT00390000008634 #23	ENSGT00940000155846 #25	ENSGT00390000018086.o.b #26	ENSGT00910000147325 #27	ENSGT00940000158144	ENSGT00940000159267	ENSGT00940000156102	ENSGT00910000147249	ENSGT00390000017079	ENSGT00940000155186	ENSGT00940000158156	ENSGT00550000074784.a.a	ENSGT00390000000924	ENSGT00950000183049.A	ENSGT00940000160328
Cercopithecinae	ANCESTRAL SPECIES	9	ENSGT00940000158953	ENSGT00610000086112	ENSGT00530000063907.c #10	ENSGT00940000164293	ENSGT00940000157876 #11	ENSGT00530000063169.a.b	ENSGT00910000147795 #12	ENSGT00940000155411.c #13	ENSGT00910000146984	ENSGT00940000154880 #14	ENSGT00940000158711 #15	ENSGT00940000164875	ENSGT00390000017819 #17	ENSGT00940000157995 #18	ENSGT00940000157492.b #19	ENSGT00390000000672.a.b.e.a #22	ENSGT00390000008634 #23	ENSGT00940000155846 #25	ENSGT00390000018086.o.b.a #26	ENSGT00910000147325 #27	ENSGT00940000158144	ENSGT00940000159267	ENSGT00940000156102	ENSGT00910000147249	ENSGT00390000017079	ENSGT00940000155186	ENSGT00390000004856.w.a.b	ENSGT00940000158156	ENSGT00550000074784.a.a	ENSGT00390000000924	ENSGT00950000183049.A
Cercopithecinae_a	ANCESTRAL SPECIES	9	ENSGT00940000156031	ENSGT00940000158953	ENSGT00610000086112	ENSGT00530000063907.c #10	ENSGT00940000157876 #11	ENSGT00530000063169.a.b	ENSGT00910000147795 #12	ENSGT00940000155411.c #13	ENSGT00910000146984	ENSGT00940000154880 #14	ENSGT00940000158711 #15	ENSGT00940000164875	ENSGT00390000017819 #17	ENSGT00940000157995 #18	ENSGT00940000157492.b #19	ENSGT00390000000672.a.b.e.a #22	ENSGT00390000008634 #23	ENSGT00940000155846 #25	ENSGT00390000018086.o.b.a #26	ENSGT00910000147325 #27	ENSGT00940000158144	ENSGT00940000159267	ENSGT00940000156102	ENSGT00910000147249	ENSGT00390000017079	ENSGT00940000155186	ENSGT00390000004856.w.a.b	ENSGT00940000158156	ENSGT00550000074784.a.a	ENSGT00390000000924	ENSGT00950000183049.A
Cercopithecinae_b	ANCESTRAL SPECIES	4	ENSGT00940000158953	ENSGT00610000086112	ENSGT00530000063907.c #10	ENSGT00940000157876 #11	ENSGT00530000063169.a.b	ENSGT00910000147795 #12	ENSGT00950000183105.B.b	ENSGT00940000155411.c #13	ENSGT00910000146984	ENSGT00940000154880 #14	ENSGT00940000158711 #15	ENSGT00940000164875	ENSGT00390000017819 #17	ENSGT00940000157995 #18	ENSGT00940000157492.b #19	ENSGT00390000000672.a.b.e.a #22	ENSGT00390000008634 #23	ENSGT00940000155846 #25	ENSGT00390000018086.o.b.a #26	ENSGT00910000147325 #27	ENSGT00940000158144	ENSGT00940000159267	ENSGT00940000156102	ENSGT00910000147249	ENSGT00390000017079	ENSGT00940000155186	ENSGT00390000004856.w.a.b	ENSGT00940000158156	ENSGT00550000074784.b	ENSGT00550000074784.a.a	ENSGT00390000000924
Olive baboon	MODERN SPECIES	15	NR2F1 (ENSPANG00000007937) #11	ENSPANG00000038763	ENSPANG00000014974	ARRDC3 (ENSPANG00000016059) #13	ENSPANG00000031238	ADGRV1 (ENSPANG00000026385) #14	LYSMD3 (ENSPANG00000008951) #15	POLR3G (ENSPANG00000006211)	MBLAC2 (ENSPANG00000001530) #17	CETN3 (ENSPANG00000010181) #18	ENSPANG00000046555	ENSPANG00000044443	MEF2C (ENSPANG00000010944) #19	ENSPANG00000037642	ENSPANG00000049972	TMEM161B (ENSPANG00000004600) #22	CCNH (ENSPANG00000023952) #23	RASA1 (ENSPANG00000017878) #25	ENSPANG00000040921 #26	ENSPANG00000051054	ENSPANG00000047004	ENSPANG00000038247	ENSPANG00000046816	EDIL3 (ENSPANG00000002875)	HAPLN1 (ENSPANG00000043592)	VCAN (ENSPANG00000000300)	XRCC4 (ENSPANG00000003281)	TMEM167A (ENSPANG00000049105)	ENSPANG00000030703	RPS23 (ENSPANG00000013597)	ATG10 (ENSPANG00000003860)
Cercopithecinae_d	ANCESTRAL SPECIES	48	ENSGT00940000158953	ENSGT00610000086112	ENSGT00530000063907.c #10	ENSGT00940000157876 #11	ENSGT00530000063169.a.b	ENSGT00910000147795 #12	ENSGT00950000183105.B.b	ENSGT00940000155411.c #13	ENSGT00910000146984	ENSGT00940000154880 #14	ENSGT00940000158711 #15	ENSGT00940000164875	ENSGT00390000017819 #17	ENSGT00940000157995 #18	ENSGT00940000157492.b #19	ENSGT00390000000672.a.b.e.a #22	ENSGT00390000008634 #23	ENSGT00940000155846 #25	ENSGT00390000018086.o.b.a #26	ENSGT00910000147325 #27	ENSGT00940000158144	ENSGT00940000159267	ENSGT00940000156102	ENSGT00910000147249	ENSGT00390000017079	ENSGT00940000155186	ENSGT00390000004856.w.a.b	ENSGT00940000158156	ENSGT00550000074784.b	ENSGT00390000000924	ENSGT00950000183049.A
Sooty mangabey	MODERN SPECIES	296	SLF1 (ENSCATG00000045157)	KIAA0825 (ENSCATG00000040813)	FAM172A (ENSCATG00000006158) #10	NR2F1 (ENSCATG00000045231) #11	ENSCATG00000044371	ENSCATG00000033426 #12	ENSCATG00000037605	ARRDC3 (ENSCATG00000011987) #13	ENSCATG00000013474	ADGRV1 (ENSCATG00000042370) #14	LYSMD3 (ENSCATG00000028915) #15	ENSCATG00000044864	MBLAC2 (ENSCATG00000019268) #17	CETN3 (ENSCATG00000031135) #18	MEF2C (ENSCATG00000041293) #19	TMEM161B (ENSCATG00000042980) #22	CCNH (ENSCATG00000041554) #23	RASA1 (ENSCATG00000014585) #25	ENSCATG00000034062 #26	ENSCATG00000035380 #27	EDIL3 (ENSCATG00000036627)	HAPLN1 (ENSCATG00000037967)	VCAN (ENSCATG00000033955)	ENSCATG00000045056	XRCC4 (ENSCATG00000031467)	TMEM167A (ENSCATG00000038227)	ENSCATG00000040706	ENSCATG00000041062	ATG10 (ENSCATG00000032132)	SSBP2 (ENSCATG00000042579)	ACOT12 (ENSCATG00000041450)
Drill	MODERN SPECIES	700								ARRDC3 (ENSMLEG00000030625) #13	ENSMLEG00000001403	ADGRV1 (ENSMLEG00000029683) #14	LYSMD3 (ENSMLEG00000040282) #15	POLR3G (ENSMLEG00000028512)	MBLAC2 (ENSMLEG00000036408) #17	CETN3 (ENSMLEG00000023585) #18	MEF2C (ENSMLEG00000034952) #19	TMEM161B (ENSMLEG00000034005) #22	CCNH (ENSMLEG00000031098) #23	RASA1 (ENSMLEG00000034154) #25
Macaca	ANCESTRAL SPECIES	7	ENSGT00390000004985.a	ENSGT00940000156031	ENSGT00940000158953	ENSGT00610000086112	ENSGT00530000063907.c #10	ENSGT00940000157876 #11	ENSGT00910000147795 #12	ENSGT00940000155411.c #13	ENSGT00910000146984	ENSGT00940000154880 #14	ENSGT00940000158711 #15	ENSGT00940000164875	ENSGT00390000017819 #17	ENSGT00940000157995 #18	ENSGT00940000157492.b #19	ENSGT00390000000672.a.b.e.a #22	ENSGT00390000008634 #23	ENSGT00940000155846 #25	ENSGT00390000018086.o.b.a #26	ENSGT00910000147325 #27	ENSGT00940000158144	ENSGT00940000159267	ENSGT00940000156102	ENSGT00910000147249	ENSGT00390000017079	ENSGT00940000155186	ENSGT00390000004856.w.a.b	ENSGT00940000158156	ENSGT00550000074784.a.a	ENSGT00390000000924	ENSGT00950000183049.A
Macaca_a	ANCESTRAL SPECIES	8	ENSGT00940000156031	ENSGT00940000158953	ENSGT00610000086112	ENSGT00530000063907.c #10	ENSGT00940000157876 #11	ENSGT00910000147795 #12	ENSGT00940000155411.c #13	ENSGT00940000166143.A.a.b.b.b.b.a.b.a.a	ENSGT00940000154880 #14	ENSGT00940000158711 #15	ENSGT00940000164875	ENSGT00390000017819 #17	ENSGT00940000157995 #18	ENSGT00940000157492.b #19	ENSGT00940000170471.I.b	ENSGT00390000000672.a.b.e.a #22	ENSGT00390000008634 #23	ENSGT00940000155846 #25	ENSGT00390000018086.o.b.a #26	ENSGT00940000158144	ENSGT00940000159267	ENSGT00940000156102	ENSGT00390000017079	ENSGT00940000155186	ENSGT00390000004856.w.a.b	ENSGT00940000158156	ENSGT00550000074784.a.a	ENSGT00390000000924	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C.c.a
Rhesus	MODERN SPECIES	16	ENSMMUG00000029933	ENSMMUG00000054299	ARRDC3 (ENSMMUG00000003569) #13	ENSMMUG00000055066	ENSMMUG00000052301	ENSMMUG00000053152	ENSMMUG00000064649	ADGRV1 (ENSMMUG00000018976) #14	LYSMD3 (ENSMMUG00000018974) #15	POLR3G (ENSMMUG00000018972)	MBLAC2 (ENSMMUG00000056954) #17	CETN3 (ENSMMUG00000020180) #18	MEF2C (ENSMMUG00000019836) #19	ENSMMUG00000053232	ENSMMUG00000062486	TMEM161B (ENSMMUG00000009319) #22	CCNH (ENSMMUG00000003248) #23	RASA1 (ENSMMUG00000003245) #25	COX7C (ENSMMUG00000040409) #26	ENSMMUG00000063160	ENSMMUG00000039961	ENSMMUG00000051689	EDIL3 (ENSMMUG00000007661)	HAPLN1 (ENSMMUG00000061282)	VCAN (ENSMMUG00000011513)	XRCC4 (ENSMMUG00000064265)	TMEM167A (ENSMMUG00000046560)	ATP6AP1L (ENSMMUG00000029954)	RPS23 (ENSMMUG00000003578)	ATG10 (ENSMMUG00000003577)	SSBP2 (ENSMMUG00000017583)
Crab-eating macaque	MODERN SPECIES	16	ENSMFAG00000062433	KIAA0825 (ENSMFAG00000037289)	FAM172A (ENSMFAG00000001171) #10	NR2F1 (ENSMFAG00000042083) #11	ENSMFAG00000032506 #12	ARRDC3 (ENSMFAG00000031762) #13	ENSMFAG00000049579	ADGRV1 (ENSMFAG00000032687) #14	LYSMD3 (ENSMFAG00000034572) #15	POLR3G (ENSMFAG00000057504)	MBLAC2 (ENSMFAG00000001314) #17	CETN3 (ENSMFAG00000036901) #18	ENSMFAG00000060678	MEF2C (ENSMFAG00000044479) #19	ENSMFAG00000058851	TMEM161B (ENSMFAG00000043023) #22	CCNH (ENSMFAG00000008721) #23	RASA1 (ENSMFAG00000037698) #25	COX7C (ENSMFAG00000035190) #26	ENSMFAG00000063591	ENSMFAG00000048019	ENSMFAG00000059027	EDIL3 (ENSMFAG00000039875)	HAPLN1 (ENSMFAG00000047220)	VCAN (ENSMFAG00000032675)	XRCC4 (ENSMFAG00000013259)	TMEM167A (ENSMFAG00000064295)	ENSMFAG00000030373	ENSMFAG00000045507	RPS23 (ENSMFAG00000046092)	ATG10 (ENSMFAG00000031807)
Pig-tailed macaque	MODERN SPECIES	184	MCTP1 (ENSMNEG00000035465)	SLF1 (ENSMNEG00000043014)	KIAA0825 (ENSMNEG00000030601)	FAM172A (ENSMNEG00000039938) #10	NR2F1 (ENSMNEG00000026061) #11	ENSMNEG00000037005 #12	ENSMNEG00000029794	ARRDC3 (ENSMNEG00000033108) #13	ENSMNEG00000021838	ADGRV1 (ENSMNEG00000035423) #14	LYSMD3 (ENSMNEG00000041200) #15	POLR3G (ENSMNEG00000029715)	MBLAC2 (ENSMNEG00000040410) #17	CETN3 (ENSMNEG00000034706) #18	MEF2C (ENSMNEG00000035741) #19	TMEM161B (ENSMNEG00000044796) #22
Rhinopithecus	ANCESTRAL SPECIES	558									ENSGT00940000158711 #15	ENSGT00940000164875	ENSGT00390000017819 #17	ENSGT00940000157995 #18	ENSGT00940000157492.b #19	ENSGT00910000148301 #20	ENSGT00910000147866	ENSGT00390000000672.a.b.e.a #22
Golden snub-nosed monkey	MODERN SPECIES	3197													MEF2C (ENSRROG00000041017) #19	ENSRROG00000035001 #20	ENSRROG00000021349	TMEM161B (ENSRROG00000042246) #22
Black snub-nosed monkey	MODERN SPECIES	1013									LYSMD3 (ENSRBIG00000029425) #15	POLR3G (ENSRBIG00000040918)	MBLAC2 (ENSRBIG00000033565) #17	ENSRBIG00000042602	ENSRBIG00000034437	MEF2C (ENSRBIG00000040542) #19	ENSRBIG00000040827 #20	TMEM161B (ENSRBIG00000037063) #22	CCBE1 (ENSRBIG00000031340)	LMAN1 (ENSRBIG00000044275)	CPLX4 (ENSRBIG00000039168)	RAX (ENSRBIG00000031446)	GRP (ENSRBIG00000031803)	ENSRBIG00000031651	SEC11C (ENSRBIG00000025516)	ZNF532 (ENSRBIG00000039248)	MALT1 (ENSRBIG00000032078)	ALPK2 (ENSRBIG00000041653)	NEDD4L (ENSRBIG00000037432)	ENSRBIG00000043735	ATP8B1 (ENSRBIG00000035681)	NARS1 (ENSRBIG00000028813)	FECH (ENSRBIG00000038117)
Catarrhini	ANCESTRAL SPECIES																	ENSGT00390000000672.a.b.e.b #22
Cercopithecidae	ANCESTRAL SPECIES																	ENSGT00390000000672.a.b.e.b #22
Cercopithecinae	ANCESTRAL SPECIES																	ENSGT00390000000672.a.b.e.b #22
Cercopithecinae_a	ANCESTRAL SPECIES																	ENSGT00390000000672.a.b.e.b #22
Cercopithecinae_b	ANCESTRAL SPECIES																	ENSGT00390000000672.a.b.e.b #22
Cercopithecinae_d	ANCESTRAL SPECIES																	ENSGT00390000000672.a.b.e.b #22
Sooty mangabey	DUPLICATION
Sooty mangabey	MODERN SPECIES	615																ENSCATG00000002144 #22
Sooty mangabey	MODERN SPECIES	588																ENSCATG00000002945 #22
Drill	MODERN SPECIES	471																ENSMLEG00000028056 #22
Hominoidea	ANCESTRAL SPECIES																	ENSGT00390000000672.a.b.e.b #22
Hominidae	ANCESTRAL SPECIES																	ENSGT00390000000672.a.b.e.b #22
Homo/Pan/Gorilla group	ANCESTRAL SPECIES																	ENSGT00390000000672.a.b.e.b #22
Gorilla	MODERN SPECIES	1	ARHGAP12 (ENSGGOG00000012753)	KIF5B (ENSGGOG00000013417)	ENSGGOG00000040767	ENSGGOG00000043841	EPC1 (ENSGGOG00000008088)	ENSGGOG00000022296	CCDC7 (ENSGGOG00000004506)	ITGB1 (ENSGGOG00000006118)	NRP1 (ENSGGOG00000001496)	PARD3 (ENSGGOG00000005482)	CUL2 (ENSGGOG00000003348)	CREM (ENSGGOG00000003999)	CCNY (ENSGGOG00000004406)	GJD4 (ENSGGOG00000005857)	ANKRD30A (ENSGGOG00000016263)	ENSGGOG00000036120 #22	ENSGGOG00000027469	ZNF248 (ENSGGOG00000016885)	ZNF25 (ENSGGOG00000023307)	ZNF33A (ENSGGOG00000014383)	ZNF37A (ENSGGOG00000006145)	ENSGGOG00000040734	ENSGGOG00000022600	ENSGGOG00000016162	ZNF33B (ENSGGOG00000012244)	ENSGGOG00000028401	ENSGGOG00000040776	RET (ENSGGOG00000003576)	CSGALNACT2 (ENSGGOG00000007891)	RASGEF1A (ENSGGOG00000004902)	FXYD4 (ENSGGOG00000010870)
Gibbon	MODERN SPECIES	8	ENSNLEG00000031664	NPFFR1 (ENSNLEG00000016116)	PPA1 (ENSNLEG00000016098)	ENSNLEG00000028866	ENSNLEG00000035168	ENSNLEG00000033145	ENSNLEG00000016088	ENSNLEG00000016058	ENSNLEG00000034853	ENSNLEG00000016053	ZFAND4 (ENSNLEG00000016016)	MARCHF8 (ENSNLEG00000015999)	ALOX5 (ENSNLEG00000015960)	ENSNLEG00000026876	ENSNLEG00000036104	ENSNLEG00000019103 #22	ZNF22 (ENSNLEG00000031260)	ENSNLEG00000033659	RASSF4 (ENSNLEG00000015929)	ENSNLEG00000032751	TMEM72 (ENSNLEG00000032425)	ENSNLEG00000030653	ENSNLEG00000033185	ENSNLEG00000033245	ENSNLEG00000015913	ZNF32 (ENSNLEG00000035247)	ZNF485 (ENSNLEG00000015899)	ENSNLEG00000034314	ZNF239 (ENSNLEG00000015896)	ENSNLEG00000029427	HNRNPF (ENSNLEG00000019098)
Catarrhini	ANCESTRAL SPECIES																	ENSGT00390000000672.a.b.f #22
Cercopithecidae	ANCESTRAL SPECIES																	ENSGT00390000000672.a.b.f #22
Cercopithecinae	ANCESTRAL SPECIES																	ENSGT00390000000672.a.b.f #22
Cercopithecinae_a	ANCESTRAL SPECIES																	ENSGT00390000000672.a.b.f #22
Macaca	ANCESTRAL SPECIES																	ENSGT00390000000672.a.b.f #22
Pig-tailed macaque	MODERN SPECIES	397																ENSMNEG00000000207 #22
Macaca_a	ANCESTRAL SPECIES																	ENSGT00390000000672.a.b.f #22
Crab-eating macaque	MODERN SPECIES	161																ENSMFAG00000005470 #22	ENSMFAG00000049431
Rhesus	MODERN SPECIES	19	CXCL12 (ENSMMUG00000012181)	ENSMMUG00000053760	ZNF32 (ENSMMUG00000062844)	ZNF485 (ENSMMUG00000061713)	ZNF239 (ENSMMUG00000054392)	ENSMMUG00000059075	ZNF487 (ENSMMUG00000064260)	ENSMMUG00000060451	ENSMMUG00000050447	HNRNPF (ENSMMUG00000020982)	FXYD4 (ENSMMUG00000050889)	ENSMMUG00000044393	RASGEF1A (ENSMMUG00000015406)	CSGALNACT2 (ENSMMUG00000015405)	RET (ENSMMUG00000015400)	ENSMMUG00000039818 #22	ENSMMUG00000059272	ENSMMUG00000051698	BMS1 (ENSMMUG00000007426)	ENSMMUG00000055704	ENSMMUG00000040267	ANKRD30BL (ENSMMUG00000004397)	ENSMMUG00000047658	ENSMMUG00000005404	ZNF33B (ENSMMUG00000010528)	ENSMMUG00000063444	ENSMMUG00000002711	ENSMMUG00000064104	ENSMMUG00000053996	ZNF248 (ENSMMUG00000010741)	ENSMMUG00000063852
Euarchontoglires_A	ANCESTRAL SPECIES	8	ENSGT00390000004985.a	ENSGT00940000156031	ENSGT00390000006564	ENSGT00940000158953	ENSGT00610000086112	ENSGT00530000063907.c #10	ENSGT00940000164293	ENSGT00940000157876 #11	ENSGT00940000155411.c #13	ENSGT00940000154880 #14	ENSGT00940000158711 #15	ENSGT01090000260129 #16	ENSGT00390000017819 #17	ENSGT00940000157995 #18	ENSGT00940000157492.b #19	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #25	ENSGT00390000018086 #26	ENSGT00940000158144	ENSGT00940000159267	ENSGT00940000156102	ENSGT00390000017079	ENSGT00940000155186	ENSGT00940000158156	ENSGT00550000074784.a.a	ENSGT01030000234916	ENSGT00550000074784.a.b	ENSGT01100000263873	ENSGT00960000186730	ENSGT00550000074784.b
Tree shrew	MODERN SPECIES	3198																TMEM161B (ENSTBEG00000010286) #22
Glires	ANCESTRAL SPECIES	7	ENSGT00390000016407	ENSGT00390000004985.a	ENSGT00940000156031	ENSGT00940000158953	ENSGT00610000086112	ENSGT00530000063907.c #10	ENSGT00940000164293	ENSGT00940000157876 #11	ENSGT00940000155411.c #13	ENSGT00940000154880 #14	ENSGT00940000158711 #15	ENSGT01090000260129 #16	ENSGT00390000017819 #17	ENSGT00940000157995 #18	ENSGT00940000157492.b #19	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #25	ENSGT00390000018086.x #26	ENSGT00940000158144	ENSGT00940000159267	ENSGT00940000156102	ENSGT00390000017079	ENSGT00940000155186	ENSGT00940000158156	ENSGT00550000074784.a.a	ENSGT01030000234916	ENSGT00550000074784.a.b	ENSGT01100000263873	ENSGT00960000186730	ENSGT00550000074784.b
Lagomorpha	ANCESTRAL SPECIES	52	ENSGT00940000158982	ENSGT00390000016407	ENSGT00390000004985.a	ENSGT00940000156031	ENSGT00940000158953	ENSGT00610000086112	ENSGT00530000063907.c #10	ENSGT00940000157876 #11	ENSGT00940000155411.c #13	ENSGT00940000154880 #14	ENSGT00940000158711 #15	ENSGT01100000265337	ENSGT00390000017819 #17	ENSGT00940000157995 #18	ENSGT00940000157492.b #19	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #25	ENSGT00390000018086.x #26	ENSGT00940000158144	ENSGT00940000159267	ENSGT00940000156102	ENSGT00390000017079	ENSGT00940000155186	ENSGT00940000158156	ENSGT00550000074784.a.a	ENSGT00390000000924	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C	ENSGT00950000182772.B.a.a
Rabbit	MODERN SPECIES	2	MCTP1 (ENSOCUG00000038402)	SLF1 (ENSOCUG00000004299)	KIAA0825 (ENSOCUG00000001921)	FAM172A (ENSOCUG00000007299) #10	ENSOCUG00000036738	ENSOCUG00000034601	ENSOCUG00000038895	ENSOCUG00000022494	ARRDC3 (ENSOCUG00000004378) #13	ADGRV1 (ENSOCUG00000017411) #14	LYSMD3 (ENSOCUG00000023323) #15	ENSOCUG00000010624	MBLAC2 (ENSOCUG00000026716) #17	CETN3 (ENSOCUG00000005711) #18	MEF2C (ENSOCUG00000029354) #19	TMEM161B (ENSOCUG00000005147) #22	ENSOCUG00000033164	ENSOCUG00000035816	CCNH (ENSOCUG00000004659) #23	RASA1 (ENSOCUG00000004646) #25	ENSOCUG00000039253 #26	ENSOCUG00000006715	ENSOCUG00000002319	ENSOCUG00000029582	ENSOCUG00000029665	EDIL3 (ENSOCUG00000017338)	HAPLN1 (ENSOCUG00000002630)	VCAN (ENSOCUG00000002613)	XRCC4 (ENSOCUG00000015052)	ENSOCUG00000009326	ENSOCUG00000014110
Pika	MODERN SPECIES	8520																TMEM161B (ENSOPRG00000015403) #22
Rodentia	ANCESTRAL SPECIES	7	ENSGT00390000016407	ENSGT00390000004985.a	ENSGT00940000156031	ENSGT00940000158953	ENSGT00610000086112	ENSGT00530000063907.c #10	ENSGT00940000164293	ENSGT00940000157876 #11	ENSGT00940000155411.c #13	ENSGT00940000154880 #14	ENSGT00940000158711 #15	ENSGT01090000260129 #16	ENSGT00390000017819 #17	ENSGT00940000157995 #18	ENSGT00940000157492.b #19	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #25	ENSGT00390000018086.x #26	ENSGT00940000158144	ENSGT00940000159267	ENSGT00940000156102	ENSGT00390000017079	ENSGT00940000155186	ENSGT00940000158156	ENSGT00550000074784.a.a	ENSGT01030000234916	ENSGT00550000074784.a.b	ENSGT00960000186730	ENSGT00550000074784.b	ENSGT00390000000924
Rodentia_B	ANCESTRAL SPECIES	4	ENSGT00390000016407	ENSGT00390000004985.a	ENSGT00940000156031	ENSGT00940000158953	ENSGT00610000086112	ENSGT00530000063907.c #10	ENSGT00940000164293	ENSGT00940000157876 #11	ENSGT00940000155411.c #13	ENSGT00940000154880 #14	ENSGT00940000158711 #15	ENSGT01090000260129 #16	ENSGT00390000017819 #17	ENSGT00940000157995 #18	ENSGT00940000157492.b #19	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #25	ENSGT00390000018086.x #26	ENSGT00940000158144	ENSGT00940000159267	ENSGT00940000156102	ENSGT00390000017079	ENSGT00940000155186	ENSGT00940000158156	ENSGT00550000074784.a.a	ENSGT00960000186730	ENSGT00550000074784.b	ENSGT00390000000924	ENSGT00950000183049.A	ENSGT00940000160328
Kangaroo rat	MODERN SPECIES	347								ENSDORG00000028809	Arrdc3 (ENSDORG00000027054) #13	Adgrv1 (ENSDORG00000006226) #14	Lysmd3 (ENSDORG00000002417) #15	ENSDORG00000002414	Mblac2 (ENSDORG00000002413) #17	Cetn3 (ENSDORG00000007233) #18	Mef2c (ENSDORG00000026015) #19	Tmem161b (ENSDORG00000012482) #22	Ccnh (ENSDORG00000001438) #23	Rasa1 (ENSDORG00000001435) #25	ENSDORG00000004968	Edil3 (ENSDORG00000000456)	ENSDORG00000026224	Hapln1 (ENSDORG00000015896)	ENSDORG00000023517	Xrcc4 (ENSDORG00000015883)	Tmem167 (ENSDORG00000026989)	Atp6ap1l (ENSDORG00000025510)	Rps23 (ENSDORG00000001813)	Atg10 (ENSDORG00000009893)	ENSDORG00000024485	Ssbp2 (ENSDORG00000001305)	Acot12 (ENSDORG00000001303)
Myomorpha	ANCESTRAL SPECIES	5	ENSGT00390000016407	ENSGT00390000004985.a	ENSGT00940000156031	ENSGT00940000158953	ENSGT00610000086112	ENSGT00530000063907.c #10	ENSGT00940000164293	ENSGT00940000157876 #11	ENSGT00940000155411.c #13	ENSGT00940000154880 #14	ENSGT00940000158711 #15	ENSGT01090000260129 #16	ENSGT00390000017819 #17	ENSGT00940000157995 #18	ENSGT00940000157492.b #19	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #25	ENSGT00390000018086.x #26	ENSGT00940000158144	ENSGT00940000159267	ENSGT00940000156102	ENSGT00390000017079	ENSGT00940000155186	ENSGT00940000158156	ENSGT00550000074784.a.a	ENSGT00960000186730	ENSGT00550000074784.b	ENSGT00390000000924	ENSGT00950000183049.A	ENSGT00940000160328
Lesser Egyptian jerboa	MODERN SPECIES	45	Skic3 (ENSJJAG00000023939)	Mctp1 (ENSJJAG00000006669)	Slf1 (ENSJJAG00000020386)	ENSJJAG00000012582	Fam172a (ENSJJAG00000018331) #10	Nr2f1 (ENSJJAG00000014194) #11	Arrdc3 (ENSJJAG00000020311) #13	ENSJJAG00000012827 #14	ENSJJAG00000021631 #14	ENSJJAG00000009537 #14	Lysmd3 (ENSJJAG00000023942) #15	ENSJJAG00000001250 #16	Mblac2 (ENSJJAG00000005655) #17	Cetn3 (ENSJJAG00000023827) #18	Mef2c (ENSJJAG00000013244) #19	Tmem161b (ENSJJAG00000024009) #22	ENSJJAG00000011002 #23	Rasa1 (ENSJJAG00000012863) #25	ENSJJAG00000003776 #26	ENSJJAG00000001446	ENSJJAG00000023444	ENSJJAG00000012743	Edil3 (ENSJJAG00000010032)	Hapln1 (ENSJJAG00000012871)	ENSJJAG00000017589	Xrcc4 (ENSJJAG00000013678)	ENSJJAG00000019023	Atp6ap1l (ENSJJAG00000015522)	Rps23 (ENSJJAG00000014219)	Atg10 (ENSJJAG00000013587)	Ssbp2 (ENSJJAG00000010960)
Muroidea	ANCESTRAL SPECIES	4	ENSGT00390000016407	ENSGT00390000004985.a	ENSGT00940000156031	ENSGT00940000158953	ENSGT00610000086112	ENSGT00530000063907.c #10	ENSGT00940000164293	ENSGT00940000157876 #11	ENSGT00940000155411.c #13	ENSGT00940000154880 #14	ENSGT00940000158711 #15	ENSGT01090000260129 #16	ENSGT00390000017819 #17	ENSGT00940000157995 #18	ENSGT00940000157492.b #19	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #25	ENSGT00390000018086.x #26	ENSGT00940000158144	ENSGT00940000159267	ENSGT00940000156102	ENSGT00390000017079	ENSGT00940000155186	ENSGT00940000158156	ENSGT00550000074784.a.a	ENSGT00960000186730	ENSGT00550000074784.b	ENSGT00390000000924	ENSGT00950000183049.A	ENSGT00940000160328
Upper Galilee mountains blind mole rat	MODERN SPECIES	1066															Mef2c (ENSNGAG00000000223) #19	Tmem161b (ENSNGAG00000010820) #22	ENSNGAG00000000735 #23	Rasa1 (ENSNGAG00000000049) #25	ENSNGAG00000001491 #26	ENSNGAG00000001102
Muroidea_A	ANCESTRAL SPECIES	11	ENSGT00390000016407	ENSGT00390000004985.a	ENSGT00940000156031	ENSGT00940000158953	ENSGT00610000086112	ENSGT00530000063907.c #10	ENSGT00940000164293	ENSGT00940000157876 #11	ENSGT00940000155411.c #13	ENSGT00940000154880 #14	ENSGT00940000158711 #15	ENSGT01090000260129 #16	ENSGT00390000017819 #17	ENSGT00940000157995 #18	ENSGT00940000157492.b #19	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #25	ENSGT00390000018086.x #26	ENSGT00940000158144	ENSGT00940000159267	ENSGT00940000156102	ENSGT00390000017079	ENSGT00940000155186	ENSGT00940000158156	ENSGT00550000074784.a.a	ENSGT00960000186730.a	ENSGT00550000074784.b	ENSGT00390000000924	ENSGT00950000183049.A	ENSGT00940000160328
Cricetidae	ANCESTRAL SPECIES	11	ENSGT00390000016407	ENSGT00390000004985.a	ENSGT00940000156031	ENSGT00940000158953	ENSGT00610000086112	ENSGT00940000164293	ENSGT00530000063907.c #10	ENSGT00940000157876 #11	ENSGT00940000155411.c #13	ENSGT00940000154880 #14	ENSGT00940000158711 #15	ENSGT01090000260129 #16	ENSGT00390000017819 #17	ENSGT00940000157995 #18	ENSGT00940000157492.b #19	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #25	ENSGT00390000018086.x #26	ENSGT00940000158144	ENSGT00940000159267	ENSGT00940000156102.c.a	ENSGT00390000017079	ENSGT00940000155186	ENSGT00940000158156	ENSGT00550000074784.a.a	ENSGT00390000000924	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C	ENSGT00950000182772.B.a.a
Cricetidae_B	ANCESTRAL SPECIES	40	ENSGT00390000016407	ENSGT00390000004985.a	ENSGT00940000156031	ENSGT00940000158953	ENSGT00610000086112	ENSGT00940000164293	ENSGT00530000063907.c #10	ENSGT00940000157876 #11	ENSGT00940000155411.c #13	ENSGT00940000154880 #14	ENSGT00940000158711 #15	ENSGT01070000254013	ENSGT00390000017819 #17	ENSGT00940000157995 #18	ENSGT00940000157492.b #19	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #25	ENSGT00390000018086.x #26	ENSGT00940000158144	ENSGT00940000159267	ENSGT00940000156102.c.a	ENSGT00390000017079	ENSGT00940000155186	ENSGT00940000158156	ENSGT00550000074784.a.a	ENSGT00390000000924	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C	ENSGT00950000182772.B.a.a
Northern American deer mouse	MODERN SPECIES	6	Gpr150 (ENSPEMG00000000751)	Arsk (ENSPEMG00000014304)	Skic3 (ENSPEMG00000018623)	Fam81b (ENSPEMG00000020666)	Mctp1 (ENSPEMG00000014096)	Slf1 (ENSPEMG00000022525)	2210408I21Rik (ENSPEMG00000008563)	Fam172a (ENSPEMG00000009604) #10	Arrdc3 (ENSPEMG00000015553) #13	Adgrv1 (ENSPEMG00000016353) #14	ENSPEMG00000031428 #15	Polr3g (ENSPEMG00000027458)	Mblac2 (ENSPEMG00000030070) #17	Cetn3 (ENSPEMG00000016510) #18	Mef2c (ENSPEMG00000019761) #19	Tmem161b (ENSPEMG00000010319) #22	ENSPEMG00000025602	ENSPEMG00000027221	Ccnh (ENSPEMG00000022235) #23	Rasa1 (ENSPEMG00000021170) #25	Cox7c (ENSPEMG00000021189) #26	ENSPEMG00000022756	ENSPEMG00000030262	Gtf2h2 (ENSPEMG00000023230)	Ocln (ENSPEMG00000014068)	Marveld2 (ENSPEMG00000010720)	Rad17 (ENSPEMG00000008160)	ENSPEMG00000026043	Ccdc125 (ENSPEMG00000022475)	ENSPEMG00000023049	Cdk7 (ENSPEMG00000001737)
Prairie vole	MODERN SPECIES	6	2210408I21Rik (ENSMOCG00000000720)	Pou5f2 (ENSMOCG00000012326)	Fam172a (ENSMOCG00000003613) #10	Nr2f1 (ENSMOCG00000013379) #11	ENSMOCG00000011944	ENSMOCG00000020099	ENSMOCG00000015077	Arrdc3 (ENSMOCG00000006099) #13	ENSMOCG00000018170 #14	ENSMOCG00000013307 #14	Lysmd3 (ENSMOCG00000020333) #15	Polr3g (ENSMOCG00000014935)	Mblac2 (ENSMOCG00000011064) #17	Cetn3 (ENSMOCG00000009624) #18	Mef2c (ENSMOCG00000010324) #19	Tmem161b (ENSMOCG00000017125) #22	Ccnh (ENSMOCG00000005334) #23	Rasa1 (ENSMOCG00000020205) #25	Cox7c (ENSMOCG00000017709) #26	ENSMOCG00000016800	Edil3 (ENSMOCG00000001973)	Hapln1 (ENSMOCG00000018799)	ENSMOCG00000000187	Xrcc4 (ENSMOCG00000015137)	Tmem167 (ENSMOCG00000013381)	ENSMOCG00000010468	ENSMOCG00000002610	Atp6ap1l (ENSMOCG00000020532)	ENSMOCG00000017478	Atg10 (ENSMOCG00000014675)	ENSMOCG00000011514
Cricetinae	ANCESTRAL SPECIES	7	ENSGT00390000004985.a	ENSGT00940000156031	ENSGT00940000158953	ENSGT00610000086112	ENSGT00530000063907.c #10	ENSGT00940000164293	ENSGT00940000157876 #11	ENSGT00940000155411.c #13	ENSGT00940000154880.bc #14	ENSGT00940000154880.cc #14	ENSGT00940000158711 #15	ENSGT01090000260129 #16	ENSGT00390000017819 #17	ENSGT00940000157995 #18	ENSGT00940000157492.b #19	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #25	ENSGT00390000018086.x #26	ENSGT00940000158144	ENSGT00940000159267	ENSGT00940000156102.c.a	ENSGT00390000017079	ENSGT00940000155186	ENSGT00940000158156	ENSGT00550000074784.a.a	ENSGT00390000000924	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C	ENSGT00950000182772.B.a.a
Chinese hamster chok1gshd	MODERN SPECIES	1	Fam172a (ENSCGRG00001019984) #10	Pou5f2 (ENSCGRG00001019940)	Nr2f1 (ENSCGRG00001020383) #11	ENSCGRG00001024656	Arrdc3 (ENSCGRG00001024801) #13	ENSCGRG00001024885 #14	ENSCGRG00001020880	ENSCGRG00001017247 #14	Lysmd3 (ENSCGRG00001004064) #15	ENSCGRG00001004958 #16	Mblac2 (ENSCGRG00001018393) #17	Cetn3 (ENSCGRG00001000920) #18	ENSCGRG00001003095	ENSCGRG00001007435	Mef2c (ENSCGRG00001006934) #19	Tmem161b (ENSCGRG00001023931) #22	Ccnh (ENSCGRG00001024363) #23	Rasa1 (ENSCGRG00001024641) #25	ENSCGRG00001007486	Cox7c (ENSCGRG00001016442) #26	ENSCGRG00001000944	ENSCGRG00001002366	Edil3 (ENSCGRG00001004897)	Hapln1 (ENSCGRG00001024344)	ENSCGRG00001014126	Xrcc4 (ENSCGRG00001022340)	Tmem167 (ENSCGRG00001013866)	Atp6ap1l (ENSCGRG00001003786)	Rps23 (ENSCGRG00001005361)	Atg10 (ENSCGRG00001012356)	Ssbp2 (ENSCGRG00001010940)
Golden Hamster	MODERN SPECIES	620	Slf1 (ENSMAUG00000012672)	2210408I21Rik (ENSMAUG00000016282)	Pou5f2 (ENSMAUG00000021043)	Fam172a (ENSMAUG00000015076) #10	Nr2f1 (ENSMAUG00000008658) #11	Arrdc3 (ENSMAUG00000010410) #13	ENSMAUG00000010057	ENSMAUG00000008116 #14	ENSMAUG00000021704 #14	Lysmd3 (ENSMAUG00000001625) #15	ENSMAUG00000008528 #16	Mblac2 (ENSMAUG00000019084) #17	Cetn3 (ENSMAUG00000021390) #18	Mef2c (ENSMAUG00000015018) #19	ENSMAUG00000015735	Tmem161b (ENSMAUG00000014575) #22	Ccnh (ENSMAUG00000017406) #23	Rasa1 (ENSMAUG00000011139) #25	Cox7c (ENSMAUG00000005056) #26	Edil3 (ENSMAUG00000009286)	ENSMAUG00000022083	Hapln1 (ENSMAUG00000008810)	ENSMAUG00000011125	Xrcc4 (ENSMAUG00000006508)	Tmem167 (ENSMAUG00000000975)	ENSMAUG00000001668	Atp6ap1l (ENSMAUG00000001232)	ENSMAUG00000011243	Atg10 (ENSMAUG00000011026)	Ssbp2 (ENSMAUG00000010660)	Acot12 (ENSMAUG00000019809)
Murinae	ANCESTRAL SPECIES	24	ENSGT00390000016407	ENSGT00390000004985.a	ENSGT00940000156031	ENSGT00940000158953	ENSGT00610000086112	ENSGT00530000063907.c #10	ENSGT00940000164293	ENSGT00940000157876 #11	ENSGT00940000155411.c #13	ENSGT00940000154880 #14	ENSGT00940000158711 #15	ENSGT01070000254013	ENSGT00390000017819 #17	ENSGT00940000157995 #18	ENSGT00940000157492.b #19	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #25	ENSGT00390000018086.x #26	ENSGT00940000158144	ENSGT00940000159267	ENSGT00940000156102	ENSGT00390000017079	ENSGT00940000155186	ENSGT00940000158156	ENSGT00550000074784.a.a	ENSGT00390000000924	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C	ENSGT00950000182772.B.a.a
Mus	ANCESTRAL SPECIES	22	ENSGT00390000016407	ENSGT00390000004985.a	ENSGT00940000156031	ENSGT00940000158953	ENSGT00610000086112	ENSGT00530000063907.c #10	ENSGT00940000164293	ENSGT00940000157876 #11	ENSGT00940000155411.c #13	ENSGT00940000154880 #14	ENSGT00940000158711 #15	ENSGT01070000254013	ENSGT00390000017819 #17	ENSGT00940000157995 #18	ENSGT00940000157492.b #19	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #25	ENSGT00390000018086.x #26	ENSGT00940000158144	ENSGT00940000159267	ENSGT00940000156102	ENSGT00390000017079	ENSGT00940000155186	ENSGT00940000158156	ENSGT00550000074784.a.a	ENSGT00390000000924	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C	ENSGT00950000182772.B.a.a
Mus_A	ANCESTRAL SPECIES	14	ENSGT00390000016407	ENSGT00390000004985.a	ENSGT00940000156031	ENSGT00940000158953	ENSGT00610000086112	ENSGT00530000063907.c #10	ENSGT00940000164293	ENSGT00940000157876 #11	ENSGT00940000155411.c #13	ENSGT00940000154880 #14	ENSGT00940000158711 #15	ENSGT01070000254013	ENSGT00390000017819 #17	ENSGT00940000157995 #18	ENSGT00940000157492.b #19	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #25	ENSGT00390000018086.x #26	ENSGT00940000158144	ENSGT00940000159267	ENSGT00940000156102	ENSGT00390000017079	ENSGT00940000155186	ENSGT00940000165493	ENSGT00940000158156	ENSGT00550000074784.a.a	ENSGT00390000000924	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C
Mus_B	ANCESTRAL SPECIES	13	ENSGT00390000016407	ENSGT00390000004985.a	ENSGT00940000156031	ENSGT00940000158953	ENSGT00610000086112	ENSGT00530000063907.c #10	ENSGT00940000164293	ENSGT00940000157876 #11	ENSGT00940000155411.c #13	ENSGT00940000154880 #14	ENSGT00940000158711 #15	ENSGT01070000254013	ENSGT00390000017819 #17	ENSGT00940000157995 #18	ENSGT00940000157492.b #19	ENSGT00390000000672.a.b #22	ENSGT00390000008634.c #23	ENSGT00940000155846 #25	ENSGT00390000018086.x #26	ENSGT00940000158144	ENSGT00940000159267	ENSGT00940000156102	ENSGT00390000017079	ENSGT00940000155186	ENSGT00940000165493	ENSGT00940000158156	ENSGT00550000074784.a.a	ENSGT00390000000924	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C
Mus_C	ANCESTRAL SPECIES	10	ENSGT00390000016407	ENSGT00390000004985.a	ENSGT00940000156031	ENSGT00940000158953	ENSGT00610000086112	ENSGT00530000063907.c #10	ENSGT00940000164293	ENSGT00940000157876 #11	ENSGT00940000155411.c #13	ENSGT00940000154880 #14	ENSGT00940000158711 #15	ENSGT01070000254013	ENSGT00390000017819 #17	ENSGT00940000157995 #18	ENSGT00940000157492.b #19	ENSGT00390000000672.a.b #22	ENSGT00390000008634.c #23	ENSGT00940000155846 #25	ENSGT01030000235102	ENSGT00940000158144	ENSGT00940000159267	ENSGT00940000156102	ENSGT00390000017079	ENSGT00940000155186	ENSGT00940000165493	ENSGT00940000158156	ENSGT00550000074784.a.a	ENSGT00390000000924	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C
spretus	MODERN SPECIES	4	Arsk (MGP_SPRETEiJ_G0019617)	Skic3 (MGP_SPRETEiJ_G0019618)	Mctp1 (MGP_SPRETEiJ_G0019619)	Slf1 (MGP_SPRETEiJ_G0019620)	2210408I21Rik (MGP_SPRETEiJ_G0019621)	Fam172a (MGP_SPRETEiJ_G0019622) #10	Pou5f2 (MGP_SPRETEiJ_G0019623)	Nr2f1 (MGP_SPRETEiJ_G0019624) #11	Arrdc3 (MGP_SPRETEiJ_G0019625) #13	Adgrv1 (MGP_SPRETEiJ_G0019626) #14	Lysmd3 (MGP_SPRETEiJ_G0019627) #15	Polr3g (MGP_SPRETEiJ_G0019628)	Mblac2 (MGP_SPRETEiJ_G0019629) #17	Cetn3 (MGP_SPRETEiJ_G0019630) #18	Mef2c (MGP_SPRETEiJ_G0019631) #19	Tmem161b (MGP_SPRETEiJ_G0019632) #22	Ccnh (MGP_SPRETEiJ_G0019633) #23	Rasa1 (MGP_SPRETEiJ_G0019634) #25	MGP_SPRETEiJ_G0019635	Edil3 (MGP_SPRETEiJ_G0019636)	Hapln1 (MGP_SPRETEiJ_G0019637)	Vcan (MGP_SPRETEiJ_G0019638)	Xrcc4 (MGP_SPRETEiJ_G0019639)	Tmem167 (MGP_SPRETEiJ_G0019640)	MGP_SPRETEiJ_G0019641	Atp6ap1l (MGP_SPRETEiJ_G0019642)	Rps23 (MGP_SPRETEiJ_G0019643)	Atg10 (MGP_SPRETEiJ_G0019644)	MGP_SPRETEiJ_G0019645	Ssbp2 (MGP_SPRETEiJ_G0019646)	Acot12 (MGP_SPRETEiJ_G0019647)
Steppe mouse	MODERN SPECIES	3320					Arrdc3 (ENSMSIG00000019683) #13	ENSMSIG00000019668	Adgrv1 (ENSMSIG00000019252) #14	Lysmd3 (ENSMSIG00000019227) #15	Polr3g (ENSMSIG00000019198)	Mblac2 (ENSMSIG00000019189) #17	Cetn3 (ENSMSIG00000019161) #18	Mef2c (ENSMSIG00000018916) #19	ENSMSIG00000018899	ENSMSIG00000018875	ENSMSIG00000018837	Tmem161b (ENSMSIG00000018760) #22
Mouse	MODERN SPECIES	4	Skic3 (ENSMUSG00000033991)	Fam81b (ENSMUSG00000109228)	Mctp1 (ENSMUSG00000021596)	Slf1 (ENSMUSG00000021597)	2210408I21Rik (ENSMUSG00000071252)	Fam172a (ENSMUSG00000064138) #10	Pou5f2 (ENSMUSG00000093668)	Nr2f1 (ENSMUSG00000069171) #11	Arrdc3 (ENSMUSG00000074794) #13	Adgrv1 (ENSMUSG00000069170) #14	Lysmd3 (ENSMUSG00000035840) #15	Polr3g (ENSMUSG00000035834)	Mblac2 (ENSMUSG00000051098) #17	Cetn3 (ENSMUSG00000021537) #18	Mef2c (ENSMUSG00000005583) #19	Tmem161b (ENSMUSG00000035762) #22	Ccnh (ENSMUSG00000021548) #23	Rasa1 (ENSMUSG00000021549) #25	Cox7c (ENSMUSG00000017778) #26	Edil3 (ENSMUSG00000034488)	Hapln1 (ENSMUSG00000021613)	Vcan (ENSMUSG00000021614)	Xrcc4 (ENSMUSG00000021615)	Tmem167 (ENSMUSG00000012422)	Atp6ap1l (ENSMUSG00000078958)	Rps23 (ENSMUSG00000049517)	Atg10 (ENSMUSG00000021619)	Ssbp2 (ENSMUSG00000003992)	Acot12 (ENSMUSG00000021620)	Zcchc9 (ENSMUSG00000021621)	Ckmt2 (ENSMUSG00000021622)
Ryukyu mouse	MODERN SPECIES	4	Arsk (MGP_CAROLIEiJ_G0018734)	Skic3 (MGP_CAROLIEiJ_G0018735)	Mctp1 (MGP_CAROLIEiJ_G0018736)	Slf1 (MGP_CAROLIEiJ_G0018737)	2210408I21Rik (MGP_CAROLIEiJ_G0018738)	Fam172a (MGP_CAROLIEiJ_G0018739) #10	Pou5f2 (MGP_CAROLIEiJ_G0018740)	Nr2f1 (MGP_CAROLIEiJ_G0018741) #11	Arrdc3 (MGP_CAROLIEiJ_G0018742) #13	Adgrv1 (MGP_CAROLIEiJ_G0018743) #14	Lysmd3 (MGP_CAROLIEiJ_G0018744) #15	Polr3g (MGP_CAROLIEiJ_G0018745)	Mblac2 (MGP_CAROLIEiJ_G0018746) #17	Cetn3 (MGP_CAROLIEiJ_G0018747) #18	Mef2c (MGP_CAROLIEiJ_G0018748) #19	Tmem161b (MGP_CAROLIEiJ_G0018749) #22	Ccnh (MGP_CAROLIEiJ_G0018750) #23	Rasa1 (MGP_CAROLIEiJ_G0018751) #25	Cox7c (MGP_CAROLIEiJ_G0018752) #26	Edil3 (MGP_CAROLIEiJ_G0018753)	Hapln1 (MGP_CAROLIEiJ_G0018754)	Vcan (MGP_CAROLIEiJ_G0018755)	Xrcc4 (MGP_CAROLIEiJ_G0018756)	Tmem167 (MGP_CAROLIEiJ_G0018757)	MGP_CAROLIEiJ_G0018758	Atp6ap1l (MGP_CAROLIEiJ_G0018759)	Rps23 (MGP_CAROLIEiJ_G0018760)	Atg10 (MGP_CAROLIEiJ_G0018761)	Ssbp2 (MGP_CAROLIEiJ_G0018762)	Acot12 (MGP_CAROLIEiJ_G0018763)	Zcchc9 (MGP_CAROLIEiJ_G0018764)
Shrew mouse	MODERN SPECIES	2	Arsk (MGP_PahariEiJ_G0015813)	Skic3 (MGP_PahariEiJ_G0015814)	Mctp1 (MGP_PahariEiJ_G0015815)	Slf1 (MGP_PahariEiJ_G0015816)	MGP_PahariEiJ_G0015817	Fam172a (MGP_PahariEiJ_G0015818) #10	Pou5f2 (MGP_PahariEiJ_G0015819)	Nr2f1 (MGP_PahariEiJ_G0015820) #11	Arrdc3 (MGP_PahariEiJ_G0015821) #13	Adgrv1 (MGP_PahariEiJ_G0015822) #14	Lysmd3 (MGP_PahariEiJ_G0015823) #15	Polr3g (MGP_PahariEiJ_G0015824)	Mblac2 (MGP_PahariEiJ_G0015825) #17	Cetn3 (MGP_PahariEiJ_G0015826) #18	Mef2c (MGP_PahariEiJ_G0015827) #19	Tmem161b (MGP_PahariEiJ_G0015828) #22	Ccnh (MGP_PahariEiJ_G0015829) #23	Rasa1 (MGP_PahariEiJ_G0015830) #25	Cox7c (MGP_PahariEiJ_G0015831) #26	Edil3 (MGP_PahariEiJ_G0015832)	Hapln1 (MGP_PahariEiJ_G0015833)	Vcan (MGP_PahariEiJ_G0015834)	Xrcc4 (MGP_PahariEiJ_G0015835)	Tmem167 (MGP_PahariEiJ_G0015836)	Vmn1r75 (MGP_PahariEiJ_G0015837)	Atp6ap1l (MGP_PahariEiJ_G0015838)	Rps23 (MGP_PahariEiJ_G0015839)	Atg10 (MGP_PahariEiJ_G0015840)	Ssbp2 (MGP_PahariEiJ_G0015841)	Acot12 (MGP_PahariEiJ_G0015842)	Zcchc9 (MGP_PahariEiJ_G0015843)
Rat	DUPLICATION
Rat	MODERN SPECIES	11	Rpl24-ps11 (ENSRNOG00000062253)	RGD1560883 (ENSRNOG00000045639)	Fam172a (ENSRNOG00000013844) #10	ENSRNOG00000066236	Nr2f1 (ENSRNOG00000014795) #11	Arrdc3 (ENSRNOG00000045649) #13	ENSRNOG00000069696	Adgrv1 (ENSRNOG00000016306) #14	Lysmd3 (ENSRNOG00000016298) #15	Polr3g (ENSRNOG00000016260)	Mblac2 (ENSRNOG00000016252) #17	Cetn3 (ENSRNOG00000050877) #18	LOC120100658 (ENSRNOG00000065778)	Mef2c (ENSRNOG00000033134) #19	AABR07007399.1 (ENSRNOG00000049010)	Tmem161b (ENSRNOG00000032414) #22	Ccnh (ENSRNOG00000031656) #23	Rasa1 (ENSRNOG00000029185) #25	Cox7c (ENSRNOG00000030237) #26	ENSRNOG00000064811	Edil3 (ENSRNOG00000033064)	ENSRNOG00000062828	Hapln1 (ENSRNOG00000032002)	Vcan (ENSRNOG00000029212)	Xrcc4 (ENSRNOG00000029966)	Tmem167a (ENSRNOG00000016686)	Atp6ap1l (ENSRNOG00000040201)	Rps23 (ENSRNOG00000016580)	Atg10 (ENSRNOG00000016342)	Ssbp2 (ENSRNOG00000016213)	Acot12 (ENSRNOG00000061414)
Rat	DUPLICATION
Rat	MODERN SPECIES	5	AABR07015941.1 (ENSRNOG00000058474)	Eif6-ps1 (ENSRNOG00000058513)	Adcy1 (ENSRNOG00000059479)	Ccdc201 (ENSRNOG00000068472)	Igfbp1 (ENSRNOG00000058780)	Igfbp3 (ENSRNOG00000061910)	LOC686087 (ENSRNOG00000058316)	Tns3 (ENSRNOG00000025695)	LOC120096659 (ENSRNOG00000061615)	Pkd1l1 (ENSRNOG00000004865)	Hus1 (ENSRNOG00000005141)	Sun3 (ENSRNOG00000005105)	LOC688553 (ENSRNOG00000037632)	Upp1 (ENSRNOG00000004972)	Abca13 (ENSRNOG00000025645)	ENSRNOG00000067374 #22	LOC685655 (ENSRNOG00000069782) #22	LOC498414 (ENSRNOG00000030665)	Vwc2 (ENSRNOG00000049076)	Zpbp (ENSRNOG00000027801)	Spata48 (ENSRNOG00000037621)	Ikzf1 (ENSRNOG00000004444)	Fignl1 (ENSRNOG00000004440)	Ddc (ENSRNOG00000004327)	Grb10 (ENSRNOG00000004290)	Cobl (ENSRNOG00000004281)	LOC100361025 (ENSRNOG00000004090)	Vstm2a (ENSRNOG00000005180)	Sec61g (ENSRNOG00000005203)	Egfr (ENSRNOG00000004332)	Fbxo48 (ENSRNOG00000023026)
Rat	MODERN SPECIES	5	Eif6-ps1 (ENSRNOG00000058513)	Adcy1 (ENSRNOG00000059479)	Ccdc201 (ENSRNOG00000068472)	Igfbp1 (ENSRNOG00000058780)	Igfbp3 (ENSRNOG00000061910)	LOC686087 (ENSRNOG00000058316)	Tns3 (ENSRNOG00000025695)	LOC120096659 (ENSRNOG00000061615)	Pkd1l1 (ENSRNOG00000004865)	Hus1 (ENSRNOG00000005141)	Sun3 (ENSRNOG00000005105)	LOC688553 (ENSRNOG00000037632)	Upp1 (ENSRNOG00000004972)	Abca13 (ENSRNOG00000025645)	ENSRNOG00000067374 #22	LOC685655 (ENSRNOG00000069782) #22	LOC498414 (ENSRNOG00000030665)	Vwc2 (ENSRNOG00000049076)	Zpbp (ENSRNOG00000027801)	Spata48 (ENSRNOG00000037621)	Ikzf1 (ENSRNOG00000004444)	Fignl1 (ENSRNOG00000004440)	Ddc (ENSRNOG00000004327)	Grb10 (ENSRNOG00000004290)	Cobl (ENSRNOG00000004281)	LOC100361025 (ENSRNOG00000004090)	Vstm2a (ENSRNOG00000005180)	Sec61g (ENSRNOG00000005203)	Egfr (ENSRNOG00000004332)	Fbxo48 (ENSRNOG00000023026)	Plek (ENSRNOG00000005214)
Rodentia_A	ANCESTRAL SPECIES	7	ENSGT00390000016407	ENSGT00390000004985.a	ENSGT00940000156031	ENSGT00940000158953	ENSGT00610000086112	ENSGT00530000063907.c #10	ENSGT00940000164293	ENSGT00940000157876 #11	ENSGT00940000155411.c #13	ENSGT00940000154880 #14	ENSGT00940000158711 #15	ENSGT01090000260129 #16	ENSGT00390000017819 #17	ENSGT00940000157995 #18	ENSGT00940000157492.b #19	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #25	ENSGT00390000018086.x #26	ENSGT00940000158144	ENSGT00940000159267	ENSGT00940000156102	ENSGT00390000017079	ENSGT00940000155186	ENSGT00940000158156	ENSGT00550000074784.a.a	ENSGT01030000234916	ENSGT00550000074784.a.b	ENSGT01100000263873	ENSGT00550000074784.b	ENSGT00390000000924
Sciuridae	ANCESTRAL SPECIES	18	ENSGT00390000016407	ENSGT00390000004985.a	ENSGT00940000156031	ENSGT00940000158953	ENSGT00610000086112	ENSGT00530000063907.c #10	ENSGT00940000164293	ENSGT00940000157876 #11	ENSGT00940000155411.c #13	ENSGT00940000154880 #14	ENSGT00940000158711 #15	ENSGT01090000260129 #16	ENSGT00390000017819 #17	ENSGT00940000157995 #18	ENSGT00940000157492.b #19	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #25	ENSGT00390000018086.x #26	ENSGT00940000158144	ENSGT00940000159267	ENSGT00940000156102	ENSGT00390000017079	ENSGT00940000155186	ENSGT00940000158156	ENSGT00550000074784.a.a	ENSGT00390000000924	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C	ENSGT00950000182772.B.a.a
Marmotini	ANCESTRAL SPECIES	23	ENSGT00390000016407	ENSGT00390000004985.a	ENSGT00940000156031	ENSGT00940000158953	ENSGT00610000086112	ENSGT00940000164293	ENSGT00530000063907.c #10	ENSGT00940000157876 #11	ENSGT00940000155411.c #13	ENSGT00940000154880.hc #14	ENSGT00940000158711 #15	ENSGT01090000260129 #16	ENSGT00390000017819 #17	ENSGT00940000157995 #18	ENSGT00940000157492.b #19	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #25	ENSGT00390000018086.x #26	ENSGT00940000158144	ENSGT00940000159267	ENSGT00940000156102	ENSGT00390000017079	ENSGT00940000155186	ENSGT00940000158156	ENSGT00550000074784.a.a	ENSGT00390000000924	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C	ENSGT00950000182772.B.a.a
Alpin marmot	DUPLICATION
Alpin marmot	MODERN SPECIES	48														MEF2C (ENSMMMG00000008360) #19	ENSMMMG00000008337	ENSMMMG00000008322 #22	ENSMMMG00000008314 #22	ENSMMMG00000008302	CCNH (ENSMMMG00000008287) #23	RASA1 (ENSMMMG00000008245) #25	COX7C (ENSMMMG00000008226) #26	EDIL3 (ENSMMMG00000008149)	HAPLN1 (ENSMMMG00000008103)	ENSMMMG00000008014	XRCC4 (ENSMMMG00000008004)	ENSMMMG00000007986	ENSMMMG00000007968	ENSMMMG00000007958	RPS23 (ENSMMMG00000007953)	ATG10 (ENSMMMG00000007945)	SSBP2 (ENSMMMG00000007897)
Alpin marmot	MODERN SPECIES	48													MEF2C (ENSMMMG00000008360) #19	ENSMMMG00000008337	ENSMMMG00000008322 #22	ENSMMMG00000008314 #22	ENSMMMG00000008302	CCNH (ENSMMMG00000008287) #23	RASA1 (ENSMMMG00000008245) #25	COX7C (ENSMMMG00000008226) #26	EDIL3 (ENSMMMG00000008149)	HAPLN1 (ENSMMMG00000008103)	ENSMMMG00000008014	XRCC4 (ENSMMMG00000008004)	ENSMMMG00000007986	ENSMMMG00000007968	ENSMMMG00000007958	RPS23 (ENSMMMG00000007953)	ATG10 (ENSMMMG00000007945)	SSBP2 (ENSMMMG00000007897)	ACOT12 (ENSMMMG00000007863)
Marmotini_b	DUPLICATION
Marmotini_b	ANCESTRAL SPECIES	89	ENSGT00390000016407	ENSGT00390000004985.a	ENSGT00940000156031	ENSGT00940000158953	ENSGT00610000086112	ENSGT00530000063907.c #10	ENSGT00940000164293	ENSGT00940000157876 #11	ENSGT00940000155411.c #13	ENSGT00940000154880.hc #14	ENSGT00940000158711 #15	ENSGT01090000260129 #16	ENSGT00390000017819 #17	ENSGT00940000157995 #18	ENSGT00940000157492.b #19	ENSGT00390000000672.a.b.k #22	ENSGT00390000008634 #23	ENSGT00940000155846 #25	ENSGT00390000018086.x #26	ENSGT00910000147325 #27	ENSGT00940000158144	ENSGT00940000159267	ENSGT00940000156102	ENSGT00390000017079	ENSGT00940000155186	ENSGT00940000158156	ENSGT00550000074784.a.a	ENSGT00390000000924	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C
Arctic ground squirrel	MODERN SPECIES	407															ENSUPAG00010000519	ENSUPAG00010000475 #22	ENSUPAG00010000464	CCNH (ENSUPAG00010000452) #23	RASA1 (ENSUPAG00010000404) #25	COX7C (ENSUPAG00010000397) #26
Squirrel	MODERN SPECIES	69	NOSTRIN (ENSSTOG00000007406)	SPC25 (ENSSTOG00000007433)	G6PC2 (ENSSTOG00000007441)	ABCB11 (ENSSTOG00000007463)	DHRS9 (ENSSTOG00000009896)	LRP2 (ENSSTOG00000009904)	ENSSTOG00000019847	ARRDC3 (ENSSTOG00000020450) #13	ENSSTOG00000031315 #14	ENSSTOG00000034589 #14	LYSMD3 (ENSSTOG00000008678) #15	ENSSTOG00000008664 #16	MBLAC2 (ENSSTOG00000023398) #17	CETN3 (ENSSTOG00000012271) #18	MEF2C (ENSSTOG00000001883) #19	ENSSTOG00000011141 #22	CCNH (ENSSTOG00000000659) #23	RASA1 (ENSSTOG00000000649) #25	COX7C (ENSSTOG00000034413) #26	ENSSTOG00000023841	ENSSTOG00000022943	EDIL3 (ENSSTOG00000003893)	HAPLN1 (ENSSTOG00000003875)	ENSSTOG00000026716	XRCC4 (ENSSTOG00000023468)	ENSSTOG00000031235	ENSSTOG00000005230	ENSSTOG00000000824	ATG10 (ENSSTOG00000005212)	SSBP2 (ENSSTOG00000001418)	ACOT12 (ENSSTOG00000001413)
Marmotini_b	ANCESTRAL SPECIES																	ENSGT00390000000672.a.b.l #22
Squirrel	MODERN SPECIES	271			ENSSTOG00000019623	ENSSTOG00000004326	ENSSTOG00000023688	ENSSTOG00000027672	ENSSTOG00000032396	ENSSTOG00000022024	ENSSTOG00000028684	H1-5 (ENSSTOG00000006133)	ENSSTOG00000006125	ENSSTOG00000020367	ENSSTOG00000023857	ENSSTOG00000031850	ENSSTOG00000030706	ENSSTOG00000031831 #22	ENSSTOG00000034579	ENSSTOG00000030356	PRSS16 (ENSSTOG00000005984)	H2AC12 (ENSSTOG00000007236)	H2BC12 (ENSSTOG00000029261)	ENSSTOG00000023310	ENSSTOG00000026144	ENSSTOG00000028749	ENSSTOG00000030654	ENSSTOG00000033773	ENSSTOG00000023645	ENSSTOG00000029728	ENSSTOG00000033423	ENSSTOG00000030249	ABT1 (ENSSTOG00000024481)
Arctic ground squirrel	MODERN SPECIES	630			ENSUPAG00010011892	ENSUPAG00010011906	ENSUPAG00010011908	ENSUPAG00010011928	ENSUPAG00010011929	H1-5 (ENSUPAG00010011937)	ENSUPAG00010011938	ENSUPAG00010011944	ENSUPAG00010011950	ENSUPAG00010011953	ENSUPAG00010011956	ENSUPAG00010011960	ENSUPAG00010011966	ENSUPAG00010011971 #22	ENSUPAG00010011977	ENSUPAG00010011989	ENSUPAG00010011996	ENSUPAG00010012005	ENSUPAG00010012019	ENSUPAG00010012024	ENSUPAG00010012049	ENSUPAG00010012055	ENSUPAG00010012062	ENSUPAG00010012068	ENSUPAG00010012075	ENSUPAG00010012083	ENSUPAG00010012088	ENSUPAG00010012096	ENSUPAG00010012111
Eurasian red squirrel	MODERN SPECIES	15	KIAA0825 (ENSSVLG00005006731)	FAM172A (ENSSVLG00005006807) #10	ENSSVLG00005006919	NR2F1 (ENSSVLG00005006944) #11	ARRDC3 (ENSSVLG00005007017) #13	ENSSVLG00005007056	ADGRV1 (ENSSVLG00005007157) #14	ENSSVLG00005007509	LYSMD3 (ENSSVLG00005007523) #15	ENSSVLG00005007556	ENSSVLG00005007572 #16	MBLAC2 (ENSSVLG00005007608) #17	CETN3 (ENSSVLG00005007638) #18	ENSSVLG00005007697	MEF2C (ENSSVLG00005007790) #19	TMEM161B (ENSSVLG00005007974) #22	CCNH (ENSSVLG00005008091) #23	RASA1 (ENSSVLG00005008223) #25	ENSSVLG00005008592 #26	EDIL3 (ENSSVLG00005008647)	HAPLN1 (ENSSVLG00005008777)	VCAN (ENSSVLG00005008932)	XRCC4 (ENSSVLG00005009326)	ENSSVLG00005009361	ENSSVLG00005009400	ENSSVLG00005009458	ATG10 (ENSSVLG00005009563)	SSBP2 (ENSSVLG00005009766)	ACOT12 (ENSSVLG00005010445)	ZCCHC9 (ENSSVLG00005010577)	CKMT2 (ENSSVLG00005010620)
Hystricomorpha	ANCESTRAL SPECIES	27	ENSGT00390000016407	ENSGT00390000004985.a	ENSGT00940000156031	ENSGT00940000158953	ENSGT00610000086112	ENSGT00530000063907.c #10	ENSGT00940000164293	ENSGT00940000157876 #11	ENSGT00940000155411.c #13	ENSGT00940000154880.gc #14	ENSGT00940000158711 #15	ENSGT01100000264660.a	ENSGT00390000017819 #17	ENSGT00940000157995 #18	ENSGT00940000157492.b #19	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #25	ENSGT00390000018086.x #26	ENSGT00940000158144	ENSGT00940000159267	ENSGT00940000156102	ENSGT00390000017079	ENSGT00940000155186	ENSGT00940000158156	ENSGT00550000074784.a.a	ENSGT01100000263873	ENSGT00550000074784.b	ENSGT00390000000924	ENSGT00950000183049.A	ENSGT00940000160328
Hystricomorpha_a	ANCESTRAL SPECIES	24	ENSGT00390000016407	ENSGT00390000004985.a	ENSGT00940000156031	ENSGT00940000158953	ENSGT00610000086112	ENSGT00530000063907.c #10	ENSGT00940000164293	ENSGT00940000157876 #11	ENSGT00940000155411.c #13	ENSGT00940000154880.gc #14	ENSGT00940000158711 #15	ENSGT01100000264660.a	ENSGT00390000017819 #17	ENSGT00940000157995 #18	ENSGT00940000157492.b #19	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #25	ENSGT00390000018086.x #26	ENSGT00940000158144	ENSGT00940000159267	ENSGT00940000156102	ENSGT00390000017079	ENSGT00940000155186	ENSGT00940000158156	ENSGT00550000074784.a.a	ENSGT01100000263873	ENSGT00390000000924	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C
Hystricomorpha_b	ANCESTRAL SPECIES	50	ENSGT00390000016407	ENSGT00390000004985.a	ENSGT00940000156031	ENSGT00940000158953	ENSGT00610000086112	ENSGT00530000063907.c #10	ENSGT00940000164293	ENSGT00940000157876 #11	ENSGT00940000155411.c #13	ENSGT00940000154880.gc #14	ENSGT00940000158711 #15	ENSGT01100000264660.a	ENSGT00390000017819 #17	ENSGT00940000157995 #18	ENSGT00940000157492.b #19	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #25	ENSGT00390000018086.x #26	ENSGT00940000158144	ENSGT00940000159267	ENSGT00940000156102	ENSGT00390000017079	ENSGT00940000155186	ENSGT00940000158156	ENSGT00550000074784.a.a	ENSGT00390000000924	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C	ENSGT00950000182772.B.a.a
Long-tailed chinchilla	MODERN SPECIES	125	MCTP1 (ENSCLAG00000004952)	SLF1 (ENSCLAG00000005160)	KIAA0825 (ENSCLAG00000005311)	FAM172A (ENSCLAG00000005472) #10	NR2F1 (ENSCLAG00000005596) #11	ARRDC3 (ENSCLAG00000005661) #13	ENSCLAG00000005769 #14	ENSCLAG00000005851 #14	ENSCLAG00000006022 #14	LYSMD3 (ENSCLAG00000006052) #15	ENSCLAG00000006118	MBLAC2 (ENSCLAG00000006185) #17	CETN3 (ENSCLAG00000006215) #18	MEF2C (ENSCLAG00000003422) #19	ENSCLAG00000003728	TMEM161B (ENSCLAG00000003850) #22	CCNH (ENSCLAG00000004012) #23	RASA1 (ENSCLAG00000004110) #25	ENSCLAG00000004179 #26	EDIL3 (ENSCLAG00000004305)	HAPLN1 (ENSCLAG00000004483)	ENSCLAG00000004575	XRCC4 (ENSCLAG00000004677)	TMEM167A (ENSCLAG00000004734)	Rps23 (ENSCLAG00000004798)	ENSCLAG00000004838	ATG10 (ENSCLAG00000004893)	SSBP2 (ENSCLAG00000004986)	ACOT12 (ENSCLAG00000005180)	ZCCHC9 (ENSCLAG00000005289)	CKMT2 (ENSCLAG00000005343)
Degu	MODERN SPECIES	170																TMEM161B (ENSODEG00000005530) #22	CCNH (ENSODEG00000005505) #23	RASA1 (ENSODEG00000005418) #25	ENSODEG00000019183	ENSODEG00000005383 #26	ENSODEG00000005376	ENSODEG00000005359	EDIL3 (ENSODEG00000005260)	HAPLN1 (ENSODEG00000005201)	ENSODEG00000005176	ENSODEG00000005159	XRCC4 (ENSODEG00000005147)	ENSODEG00000005125	ENSODEG00000005103	RPS23 (ENSODEG00000005092)	ATG10 (ENSODEG00000005078)
Guinea pig	MODERN SPECIES	1	FAM81B (ENSCPOG00000005332)	MCTP1 (ENSCPOG00000005018)	SLF1 (ENSCPOG00000005012)	KIAA0825 (ENSCPOG00000002594)	FAM172A (ENSCPOG00000013935) #10	NR2F1 (ENSCPOG00000005883) #11	ARRDC3 (ENSCPOG00000002749) #13	ENSCPOG00000030916 #14	ENSCPOG00000004008 #14	ENSCPOG00000035017 #14	LYSMD3 (ENSCPOG00000031696) #15	ENSCPOG00000036643	MBLAC2 (ENSCPOG00000036054) #17	CETN3 (ENSCPOG00000023805) #18	MEF2C (ENSCPOG00000035485) #19	TMEM161B (ENSCPOG00000003613) #22	CCNH (ENSCPOG00000007894) #23	RASA1 (ENSCPOG00000007883) #25	COX7C (ENSCPOG00000037322) #26	EDIL3 (ENSCPOG00000006986)	HAPLN1 (ENSCPOG00000037148)	ENSCPOG00000039167	XRCC4 (ENSCPOG00000012258)	TMEM167A (ENSCPOG00000026186)	ENSCPOG00000011131	RPS23 (ENSCPOG00000037620)	ENSCPOG00000022705	ATG10 (ENSCPOG00000032098)	SSBP2 (ENSCPOG00000001712)	ACOT12 (ENSCPOG00000009718)	ZCCHC9 (ENSCPOG00000003947)
Naked mole-rat female	MODERN SPECIES	25	ENSHGLG00000049662	ENSHGLG00000009574 #13	ENSHGLG00000008871 #14	ENSHGLG00000043201	ENSHGLG00000048068	ENSHGLG00000042570 #14	ENSHGLG00000038073 #14	ENSHGLG00000036506	LYSMD3 (ENSHGLG00000039807) #15	ENSHGLG00000039707	MBLAC2 (ENSHGLG00000046616) #17	CETN3 (ENSHGLG00000036397) #18	MEF2C (ENSHGLG00000008715) #19	ENSHGLG00000042125	ENSHGLG00000002953	TMEM161B (ENSHGLG00000016157) #22	ENSHGLG00000012753	CCNH (ENSHGLG00000007779) #23	RASA1 (ENSHGLG00000005734) #25	ENSHGLG00000033884	COX7C (ENSHGLG00000032953) #26	EDIL3 (ENSHGLG00000013218)	HAPLN1 (ENSHGLG00000034114)	VCAN (ENSHGLG00000010244)	XRCC4 (ENSHGLG00000032875)	TMEM167A (ENSHGLG00000036731)	ENSHGLG00000036000	ENSHGLG00000008165	ENSHGLG00000007844
Laurasiatheria	ANCESTRAL SPECIES	8	ENSGT00940000158953	ENSGT00940000165033	ENSGT00610000086112	ENSGT00940000165983	ENSGT00530000063907.c #10	ENSGT00940000164293	ENSGT00940000157876 #11	ENSGT00940000155411.c #13	ENSGT00940000154880 #14	ENSGT00940000158711 #15	ENSGT01090000260129 #16	ENSGT00390000017819 #17	ENSGT00940000157995 #18	ENSGT00940000157492.b #19	ENSGT00910000147866	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #25	ENSGT00390000018086 #26	ENSGT00940000158144	ENSGT00940000159267	ENSGT00940000156102	ENSGT00390000017079	ENSGT00940000155186	ENSGT00940000158156	ENSGT00550000074784.a.a	ENSGT01030000234916	ENSGT00550000074784.a.b	ENSGT00550000074784.b	ENSGT00390000000924	ENSGT00950000183049.A
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00390000000672.a.b #22
Hedgehog	MODERN SPECIES	5758																TMEM161B (ENSEEUG00000014617) #22
Common shrew	MODERN SPECIES	4475																TMEM161B (ENSSARG00000012956) #22
Laurasiatheria_a	ANCESTRAL SPECIES	9	ENSGT00940000158953	ENSGT00940000165033	ENSGT00610000086112	ENSGT00940000165983	ENSGT00530000063907.c #10	ENSGT00940000164293	ENSGT00940000157876 #11	ENSGT00940000155411.c #13	ENSGT00940000154880 #14	ENSGT00940000158711 #15	ENSGT01090000260129 #16	ENSGT00390000017819 #17	ENSGT00940000157995 #18	ENSGT00940000157492.b #19	ENSGT00910000147866	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #25	ENSGT00390000018086.z #26	ENSGT00940000158144	ENSGT01010000224334	ENSGT00940000159267	ENSGT00940000156102	ENSGT00390000017079	ENSGT00940000155186	ENSGT00940000158156	ENSGT00550000074784.a.a	ENSGT01030000234916	ENSGT00550000074784.a.b	ENSGT00550000074784.b	ENSGT00390000000924
Artiodactyla	ANCESTRAL SPECIES	8	ENSGT00940000156031	ENSGT00940000158953	ENSGT00940000165033	ENSGT00610000086112	ENSGT00940000164293	ENSGT00530000063907.c #10	ENSGT00940000157876 #11	ENSGT00940000155411.c #13	ENSGT00940000154880 #14	ENSGT00940000158711 #15	ENSGT01090000260129 #16	ENSGT00390000017819 #17	ENSGT00940000157995 #18	ENSGT00940000157492.b #19	ENSGT00910000147866	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #25	ENSGT00390000018086.z #26	ENSGT00740000115534.a.b.f.a.b	ENSGT00390000018086.y.a #26	ENSGT00940000158144	ENSGT01010000224334	ENSGT00940000159267	ENSGT00940000156102	ENSGT00390000017079	ENSGT00940000155186	ENSGT00940000158156	ENSGT00550000074784.a.a.ed	ENSGT00390000000924	ENSGT00950000183049.A
Suina	ANCESTRAL SPECIES	11	ENSGT00390000004985.a	ENSGT00940000156031	ENSGT00940000158953	ENSGT00940000165033	ENSGT00610000086112	ENSGT00940000164293	ENSGT00530000063907.c #10	ENSGT00940000157876 #11	ENSGT00940000155411.c #13	ENSGT00940000154880 #14	ENSGT00940000158711 #15	ENSGT01100000264016	ENSGT00390000017819 #17	ENSGT00940000157995 #18	ENSGT00940000157492.b #19	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #25	ENSGT00390000018086.z #26	ENSGT00390000018086.y.a #26	ENSGT00940000158144	ENSGT00940000159267	ENSGT00940000156102	ENSGT00390000017079	ENSGT00940000155186	ENSGT00940000158156	ENSGT00550000074784.a.a.ed	ENSGT00390000000924	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C
Pig	MODERN SPECIES	10	SLF1 (ENSSSCG00000014163)	ENSSSCG00000062599	KIAA0825 (ENSSSCG00000014161)	FAM172A (ENSSSCG00000027608) #10	NR2F1 (ENSSSCG00000014157) #11	ENSSSCG00000046245	ENSSSCG00000056856	ARRDC3 (ENSSSCG00000014156) #13	ADGRV1 (ENSSSCG00000035025) #14	LYSMD3 (ENSSSCG00000024193) #15	ENSSSCG00000026233	MBLAC2 (ENSSSCG00000014152) #17	CETN3 (ENSSSCG00000014151) #18	MEF2C (ENSSSCG00000014149) #19	ENSSSCG00000050823	TMEM161B (ENSSSCG00000014148) #22	ENSSSCG00000048763	CCNH (ENSSSCG00000014147) #23	RASA1 (ENSSSCG00000014146) #25	ENSSSCG00000053558	COX7C (ENSSSCG00000040325) #26	ENSSSCG00000061130	EDIL3 (ENSSSCG00000026780)	HAPLN1 (ENSSSCG00000014137)	ENSSSCG00000038060	VCAN (ENSSSCG00000014136)	ENSSSCG00000045510	TMEM167A (ENSSSCG00000056442)	ENSSSCG00000057529	ENSSSCG00000047325	ENSSSCG00000014132
Chacoan peccary	MODERN SPECIES	204	SKIC3 (ENSCWAG00000020750)	FAM81B (ENSCWAG00000020714)	MCTP1 (ENSCWAG00000019869)	SLF1 (ENSCWAG00000019739)	KIAA0825 (ENSCWAG00000019715)	ENSCWAG00000019685	FAM172A (ENSCWAG00000019628) #10	NR2F1 (ENSCWAG00000019554) #11	ARRDC3 (ENSCWAG00000019512) #13	ADGRV1 (ENSCWAG00000019126) #14	LYSMD3 (ENSCWAG00000019073) #15	ENSCWAG00000019055	MBLAC2 (ENSCWAG00000019036) #17	CETN3 (ENSCWAG00000019002) #18	MEF2C (ENSCWAG00000018755) #19	TMEM161B (ENSCWAG00000018662) #22	CCNH (ENSCWAG00000018608) #23	RASA1 (ENSCWAG00000018315) #25	COX7C (ENSCWAG00000018267) #26	EDIL3 (ENSCWAG00000018152)	HAPLN1 (ENSCWAG00000018099)	VCAN (ENSCWAG00000017930)	XRCC4 (ENSCWAG00000017866)	TMEM167A (ENSCWAG00000017841)	ENSCWAG00000017781	RPS23 (ENSCWAG00000017751)	ATG10 (ENSCWAG00000017706)	SSBP2 (ENSCWAG00000017558)	ACOT12 (ENSCWAG00000017413)	ZCCHC9 (ENSCWAG00000017376)	CKMT2 (ENSCWAG00000017315)
Artiodactyla_a	ANCESTRAL SPECIES	7	ENSGT00940000158953	ENSGT00940000165033	ENSGT00610000086112	ENSGT00940000165983	ENSGT00530000063907.c #10	ENSGT00940000164293	ENSGT00940000157876 #11	ENSGT00940000155411.c #13	ENSGT00940000154880 #14	ENSGT00940000158711 #15	ENSGT01090000260129 #16	ENSGT00390000017819 #17	ENSGT00940000157995 #18	ENSGT00940000157492.b #19	ENSGT00910000147866	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #25	ENSGT00390000018086.z #26	ENSGT00940000158144	ENSGT01010000224334	ENSGT00940000159267	ENSGT00940000156102	ENSGT00390000017079	ENSGT00940000155186	ENSGT00940000158156	ENSGT00550000074784.a.a.ed	ENSGT00390000000924	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C
Artiodactyla_b	ANCESTRAL SPECIES	8	ENSGT00940000156031	ENSGT00940000158953	ENSGT00940000165033	ENSGT00610000086112	ENSGT00940000164293	ENSGT00530000063907.c #10	ENSGT00940000157876 #11	ENSGT00940000155411.c #13	ENSGT00940000154880 #14	ENSGT00940000158711 #15	ENSGT01090000260129 #16	ENSGT00390000017819 #17	ENSGT00940000157995 #18	ENSGT00940000157492.b #19	ENSGT00910000147866	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #25	ENSGT00390000018086.z #26	ENSGT00740000115534.a.b.f.a.b	ENSGT00390000018086.y.a #26	ENSGT00940000158144	ENSGT01010000224334	ENSGT00940000159267	ENSGT00940000156102	ENSGT00390000017079	ENSGT00940000155186.t	ENSGT00940000158156	ENSGT00550000074784.a.a.ed.g	ENSGT00390000000924	ENSGT00950000183049.A
Cetacea	ANCESTRAL SPECIES	1	ENSGT00610000086112	ENSGT00940000164293	ENSGT00530000063907.c #10	ENSGT00940000157876 #11	ENSGT00940000154925.h	ENSGT00940000155411.c #13	ENSGT00940000154880 #14	ENSGT00940000158711 #15	ENSGT01090000260129 #16	ENSGT00390000017819 #17	ENSGT00960000190376.a	ENSGT00940000157995 #18	ENSGT00510000047137.c.b	ENSGT00940000157492.b #19	ENSGT00910000147866	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #25	ENSGT00390000018086.y.a #26	ENSGT00940000158144	ENSGT01010000224334	ENSGT00940000159267	ENSGT00940000156102	ENSGT00390000017079	ENSGT00940000155186.t	ENSGT00940000158156	ENSGT00550000074784.a.a.ed.g	ENSGT00390000000924	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C
Odontoceti	ANCESTRAL SPECIES	1	ENSGT00530000063907.c #10	ENSGT00940000157876 #11	ENSGT00940000154925.h	ENSGT00940000154383.h.b	ENSGT00940000155411.c #13	ENSGT01000000220781	ENSGT00940000154880 #14	ENSGT00940000158711 #15	ENSGT01090000260129 #16	ENSGT00390000017819 #17	ENSGT00960000190376.a	ENSGT00940000157995 #18	ENSGT00510000047137.c.b	ENSGT00940000157492.b #19	ENSGT00910000147866	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #25	ENSGT00390000018086.y.a #26	ENSGT00940000158144	ENSGT01010000224334	ENSGT00940000159267	ENSGT00940000156102	ENSGT00390000017079	ENSGT00940000155186.t	ENSGT00940000158156	ENSGT00550000074784.a.a.ed.g	ENSGT00390000000924	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C
Odontoceti_a	ANCESTRAL SPECIES	1	ENSGT00530000063907.c #10	ENSGT00940000157876 #11	ENSGT00940000154925.h	ENSGT00940000154383.h.b	ENSGT00940000155411.c #13	ENSGT01000000220781	ENSGT00940000154880 #14	ENSGT00940000158711 #15	ENSGT01090000260129 #16	ENSGT00390000017819 #17	ENSGT00960000190376.a	ENSGT00940000157995 #18	ENSGT00510000047137.c.b	ENSGT00940000157492.b #19	ENSGT00910000147866	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #25	ENSGT00390000018086.y.a #26	ENSGT00940000158144	ENSGT01010000224334	ENSGT00940000159267	ENSGT00940000156102	ENSGT00390000017079	ENSGT00940000155186.s.b	ENSGT00940000158156	ENSGT00550000074784.a.a.ed.g	ENSGT00390000000924	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C
Odontoceti_b	ANCESTRAL SPECIES	1	ENSGT00530000063907.c #10	ENSGT00940000157876 #11	ENSGT00940000154925.h	ENSGT00940000154383.h.b	ENSGT00940000155411.c #13	ENSGT01000000220781	ENSGT00940000154880 #14	ENSGT00940000158711 #15	ENSGT01090000260129 #16	ENSGT00390000017819 #17	ENSGT00960000190376.a	ENSGT00940000157995 #18	ENSGT00510000047137.c.b	ENSGT00940000157492.b #19	ENSGT00910000147866	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #25	ENSGT00390000018086.y.a.c #26	ENSGT00940000158144	ENSGT01010000224334	ENSGT00940000159267	ENSGT00940000156102	ENSGT00390000017079	ENSGT00940000155186.s.b	ENSGT00940000154612.n	ENSGT00940000158156	ENSGT00550000074784.a.a.ed.g	ENSGT00390000000924	ENSGT00950000183049.A	ENSGT00940000160328
Monodontidae	ANCESTRAL SPECIES	7	ENSGT00530000063907.c #10	ENSGT00940000157876 #11	ENSGT00940000154925.h	ENSGT00940000154383.h.b	ENSGT00940000155411.c #13	ENSGT01000000220781	ENSGT00940000154880.lb #14	ENSGT00940000158711 #15	ENSGT01090000260129 #16	ENSGT00390000017819 #17	ENSGT00960000190376.a	ENSGT00940000157995 #18	ENSGT00510000047137.c.b	ENSGT00940000157492.b #19	ENSGT00910000147866	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #25	ENSGT00390000018086.y.a.c #26	ENSGT00940000158144	ENSGT01010000224334	ENSGT00940000159267	ENSGT00940000156102	ENSGT00390000017079	ENSGT00940000155186.t	ENSGT00940000155186.s.b	ENSGT00940000154612.n	ENSGT00940000158156	ENSGT00550000074784.a.a.ed.g	ENSGT00390000000924	ENSGT00950000183049.A
Narwhal	MODERN SPECIES	298	FAM172A (ENSMMNG00015006089) #10	NR2F1 (ENSMMNG00015006059) #11	ENSMMNG00015006040	ENSMMNG00015006035	ARRDC3 (ENSMMNG00015006011) #13	ENSMMNG00015006000	ADGRV1 (ENSMMNG00015005901) #14	LYSMD3 (ENSMMNG00015005843) #15	ENSMMNG00015005829 #16	MBLAC2 (ENSMMNG00015005814) #17	ENSMMNG00015005807	CETN3 (ENSMMNG00015005786) #18	ENSMMNG00015005764	MEF2C (ENSMMNG00015005678) #19	ENSMMNG00015005616	TMEM161B (ENSMMNG00015005563) #22	CCNH (ENSMMNG00015005516) #23	RASA1 (ENSMMNG00015005429) #25	ENSMMNG00015005384 #26	EDIL3 (ENSMMNG00015005343)	ENSMMNG00015005323	HAPLN1 (ENSMMNG00015005308)	VCAN (ENSMMNG00015005267)	ENSMMNG00015005224	XRCC4 (ENSMMNG00015005213)	ENSMMNG00015005197	ENSMMNG00015009107	ENSMMNG00015009097	ENSMMNG00015009087	ATG10 (ENSMMNG00015009080)	SSBP2 (ENSMMNG00015009022)
Beluga whale	MODERN SPECIES	71	FAM172A (ENSDLEG00000012512) #10	NR2F1 (ENSDLEG00000012558) #11	ENSDLEG00000012567	ENSDLEG00000012573	ARRDC3 (ENSDLEG00000012589) #13	ENSDLEG00000012603	ENSDLEG00000012615 #14	ENSDLEG00000012741 #14	LYSMD3 (ENSDLEG00000012794) #15	POLR3G (ENSDLEG00000012841) #16	MBLAC2 (ENSDLEG00000012852) #17	ENSDLEG00000012856	CETN3 (ENSDLEG00000012868) #18	MEF2C (ENSDLEG00000012940) #19	ENSDLEG00000012966	TMEM161B (ENSDLEG00000012991) #22	CCNH (ENSDLEG00000013031) #23	RASA1 (ENSDLEG00000013059) #25	ENSDLEG00000013150 #26	EDIL3 (ENSDLEG00000013171)	HAPLN1 (ENSDLEG00000013237)	VCAN (ENSDLEG00000013258)	XRCC4 (ENSDLEG00000013308)	ENSDLEG00000013342	ENSDLEG00000013363	RPS23 (ENSDLEG00000013381)	ATG10 (ENSDLEG00000013394)	SSBP2 (ENSDLEG00000013445)	ACOT12 (ENSDLEG00000013510)	ZCCHC9 (ENSDLEG00000013535)	CKMT2 (ENSDLEG00000013554)
Vaquita	MODERN SPECIES	14	ENSPSNG00000001316	FAM172A (ENSPSNG00000001390) #10	ENSPSNG00000001456	NR2F1 (ENSPSNG00000001479) #11	ENSPSNG00000001514	ENSPSNG00000001530	ARRDC3 (ENSPSNG00000001549) #13	ADGRV1 (ENSPSNG00000001637) #14	LYSMD3 (ENSPSNG00000001854) #15	ENSPSNG00000001891 #16	MBLAC2 (ENSPSNG00000001913) #17	ENSPSNG00000001923	CETN3 (ENSPSNG00000001948) #18	MEF2C (ENSPSNG00000002155) #19	ENSPSNG00000002482	TMEM161B (ENSPSNG00000002519) #22	CCNH (ENSPSNG00000002571) #23	RASA1 (ENSPSNG00000002638) #25	ENSPSNG00000002806 #26	EDIL3 (ENSPSNG00000002853)	ENSPSNG00000002915	HAPLN1 (ENSPSNG00000002928)	VCAN (ENSPSNG00000002974)	XRCC4 (ENSPSNG00000003042)	ENSPSNG00000003056	TMEM167A (ENSPSNG00000003071)	ENSPSNG00000003094	RPS23 (ENSPSNG00000003143)	ATG10 (ENSPSNG00000003163)	SSBP2 (ENSPSNG00000003238)	ACOT12 (ENSPSNG00000003353)
Dolphin	MODERN SPECIES	4850																TMEM161B (ENSTTRG00000006087) #22
Sperm whale	MODERN SPECIES	19	KIAA0825 (ENSPCTG00005007436)	ENSPCTG00005007392	FAM172A (ENSPCTG00005007280) #10	NR2F1 (ENSPCTG00005007190) #11	ENSPCTG00005007157	ENSPCTG00005007141	ARRDC3 (ENSPCTG00005007110) #13	ENSPCTG00005007095	ADGRV1 (ENSPCTG00005006712) #14	LYSMD3 (ENSPCTG00005006625) #15	POLR3G (ENSPCTG00005006608) #16	MBLAC2 (ENSPCTG00005006581) #17	CETN3 (ENSPCTG00005006544) #18	MEF2C (ENSPCTG00005006331) #19	ENSPCTG00005006281	TMEM161B (ENSPCTG00005006187) #22	ENSPCTG00005006131	ENSPCTG00005006111	CCNH (ENSPCTG00005006072) #23	RASA1 (ENSPCTG00005005901) #25	COX7C (ENSPCTG00005005822) #26	ENSPCTG00005005787	EDIL3 (ENSPCTG00005005744)	ENSPCTG00005005670	HAPLN1 (ENSPCTG00005005652)	VCAN (ENSPCTG00005005066)	XRCC4 (ENSPCTG00005004952)	ENSPCTG00005004922	ENSPCTG00005004898	RPS23 (ENSPCTG00005004877)	ENSPCTG00005004844
Blue whale	MODERN SPECIES	14	ENSBMSG00010001695	FAM172A (ENSBMSG00010001641) #10	NR2F1 (ENSBMSG00010001599) #11	ENSBMSG00010001583	ARRDC3 (ENSBMSG00010001576) #13	ENSBMSG00010001567	ENSBMSG00010001561	ADGRV1 (ENSBMSG00010001495) #14	LYSMD3 (ENSBMSG00010001422) #15	ENSBMSG00010001406	MBLAC2 (ENSBMSG00010001393) #17	ENSBMSG00010001381	CETN3 (ENSBMSG00010001364) #18	ENSBMSG00010001350	MEF2C (ENSBMSG00010000526) #19	TMEM161B (ENSBMSG00010000201) #22	ENSBMSG00010000148	CCNH (ENSBMSG00010000119) #23	RASA1 (ENSBMSG00010000084) #25	ENSBMSG00010000023 #26	EDIL3 (ENSBMSG00010007186)	ENSBMSG00010007170	HAPLN1 (ENSBMSG00010007160)	VCAN (ENSBMSG00010007115)	XRCC4 (ENSBMSG00010007092)	ENSBMSG00010007076	RPS23 (ENSBMSG00010007033)	ATG10 (ENSBMSG00010007011)	SSBP2 (ENSBMSG00010006966)	ACOT12 (ENSBMSG00010006914)	ENSBMSG00010006899
Pecora	ANCESTRAL SPECIES		ENSGT00390000016407	ENSGT00390000004985.a	ENSGT00940000156031	ENSGT00940000158953	ENSGT00610000086112	ENSGT00530000063907.c #10	ENSGT00940000157876 #11	ENSGT00940000155411.c #13	ENSGT00940000154880 #14	ENSGT00940000158711 #15	ENSGT01090000260253	ENSGT00390000017819 #17	ENSGT00940000157995 #18	ENSGT00940000157492.b #19	ENSGT00910000147866	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #25	ENSGT00390000018086.z.h.a.b.a.a #26	ENSGT00940000158144	ENSGT00940000159267	ENSGT00940000156102	ENSGT00390000017079	ENSGT00940000155186.t	ENSGT00940000158156	ENSGT00550000074784.a.a.ed.g	ENSGT00390000000924	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C	ENSGT00950000182772.B.a.a
Percora_a	ANCESTRAL SPECIES		ENSGT00390000016407	ENSGT00390000004985.a	ENSGT00940000156031	ENSGT00940000158953	ENSGT00610000086112	ENSGT00530000063907.c #10	ENSGT00940000157876 #11	ENSGT00940000155411.c #13	ENSGT00940000154880 #14	ENSGT00940000158711 #15	ENSGT01090000260253	ENSGT00390000017819 #17	ENSGT00940000157995 #18	ENSGT00940000157492.b #19	ENSGT00910000147866	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #25	ENSGT00390000018086.z.h.a.b.a.a.a #26	ENSGT00940000158144	ENSGT00940000159267	ENSGT00940000156102	ENSGT00390000017079	ENSGT00940000155186.t	ENSGT00940000158156	ENSGT00550000074784.a.a.ed.g	ENSGT00390000000924	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C	ENSGT00950000182772.B.a.a
Bovidae	ANCESTRAL SPECIES		ENSGT00390000004985.a	ENSGT00940000156031	ENSGT00940000158953	ENSGT00610000086112	ENSGT00530000063907.c #10	ENSGT00940000157876 #11	ENSGT00940000155411.c #13	ENSGT00940000154880 #14	ENSGT00940000158711 #15	ENSGT01090000260253	ENSGT00390000017819 #17	ENSGT00940000157995 #18	ENSGT00940000157492.b #19	ENSGT00960000192799	ENSGT00910000147866	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #25	ENSGT00390000018086.z.h.a.b.a.a.a #26	ENSGT00940000158144	ENSGT00940000159267	ENSGT00940000156102	ENSGT00390000017079	ENSGT00940000155186.t	ENSGT00940000158156	ENSGT00550000074784.a.a.ed.g	ENSGT00390000000924	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C	ENSGT00950000182772.B.a.a
Caprinae	ANCESTRAL SPECIES	3	ENSGT00390000004985.a	ENSGT00940000156031	ENSGT00940000158953	ENSGT00610000086112	ENSGT00530000063907.c #10	ENSGT00940000157876 #11	ENSGT00940000155411.c #13	ENSGT00940000154880 #14	ENSGT00940000158711 #15	ENSGT01090000260253.a	ENSGT00390000017819 #17	ENSGT00940000157995 #18	ENSGT00940000157492.b #19	ENSGT00960000192799	ENSGT00910000147866	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #25	ENSGT00390000018086.z.h.a.b.a.a.a.b #26	ENSGT00940000158144	ENSGT00940000159267	ENSGT00940000156102	ENSGT00390000017079	ENSGT00940000158156	ENSGT00550000074784.a.a.ed.g	ENSGT00390000000924	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C	ENSGT00950000182772.B.a.a	ENSGT00940000155679
Goat	MODERN SPECIES	26	SKIC3 (ENSCHIG00000019341)	FAM81B (ENSCHIG00000011215)	MCTP1 (ENSCHIG00000011686)	SLF1 (ENSCHIG00000015215)	KIAA0825 (ENSCHIG00000016143)	FAM172A (ENSCHIG00000008440) #10	NR2F1 (ENSCHIG00000010694) #11	ARRDC3 (ENSCHIG00000026437) #13	ADGRV1 (ENSCHIG00000025783) #14	LYSMD3 (ENSCHIG00000003504) #15	ENSCHIG00000018071	MBLAC2 (ENSCHIG00000023453) #17	CETN3 (ENSCHIG00000016019) #18	ENSCHIG00000020592	MEF2C (ENSCHIG00000016206) #19	TMEM161B (ENSCHIG00000026629) #22	ENSCHIG00000009148	ENSCHIG00000011671	CCNH (ENSCHIG00000023767) #23	RASA1 (ENSCHIG00000014118) #25	ENSCHIG00000026992 #26	ENSCHIG00000018614	EDIL3 (ENSCHIG00000020190)	HAPLN1 (ENSCHIG00000023635)	VCAN (ENSCHIG00000026117)	XRCC4 (ENSCHIG00000015879)	ENSCHIG00000010267	ENSCHIG00000012625	ENSCHIG00000026375	RPS23 (ENSCHIG00000014944)	ATG10 (ENSCHIG00000023237)
Rambouillet Sheep	MODERN SPECIES	21	ENSOARG00020007207	FAM172A (ENSOARG00020007055) #10	NR2F1 (ENSOARG00020006905) #11	ENSOARG00020023877	ENSOARG00020023867	ARRDC3 (ENSOARG00020023796) #13	ENSOARG00020023738 #14	ENSOARG00020023494 #14	LYSMD3 (ENSOARG00020023468) #15	POLR3G (ENSOARG00020023448)	MBLAC2 (ENSOARG00020023430) #17	CETN3 (ENSOARG00020023394) #18	MEF2C (ENSOARG00020023218) #19	ENSOARG00020023187	ENSOARG00020023175	TMEM161B (ENSOARG00020022987) #22	CCNH (ENSOARG00020022925) #23	RASA1 (ENSOARG00020021922) #25	ENSOARG00020021822 #26	ENSOARG00020021797	EDIL3 (ENSOARG00020021700)	HAPLN1 (ENSOARG00020021646)	VCAN (ENSOARG00020021234)	XRCC4 (ENSOARG00020021156)	ENSOARG00020021132	TMEM167A (ENSOARG00020021065)	RPS23 (ENSOARG00020020958)	ENSOARG00020020926	ATG10 (ENSOARG00020020709)	SSBP2 (ENSOARG00020017360)	ACOT12 (ENSOARG00020017094)
Bovinae	ANCESTRAL SPECIES	2	ENSGT00940000156031	ENSGT00940000158953	ENSGT00610000086112	ENSGT00530000063907.c #10	ENSGT00940000157876 #11	ENSGT00940000155411.c #13	ENSGT00940000154880 #14	ENSGT00940000158711 #15	ENSGT01090000260253	ENSGT00390000017819 #17	ENSGT00940000157995 #18	ENSGT00390000013276.o.b	ENSGT00940000157492.b #19	ENSGT00960000192799	ENSGT00910000147866	ENSGT00390000000672.a.b #22	ENSGT00940000153147.m.a.a.a.a.a	ENSGT00390000008634 #23	ENSGT00940000155846 #25	ENSGT00390000011776.i.b.a	ENSGT00390000018086.z.h.a.b.a.a.a.c #26	ENSGT00940000158144	ENSGT00940000159267	ENSGT00940000156102	ENSGT00390000017079	ENSGT00940000155186.t.c.a	ENSGT00940000158156	ENSGT00550000074784.a.a.ed.g	ENSGT00390000000924	ENSGT00950000183049.A	ENSGT00940000160328
Bos	ANCESTRAL SPECIES	3	ENSGT00940000156031	ENSGT00940000158953	ENSGT00610000086112	ENSGT00530000063907.c #10	ENSGT00940000157876 #11	ENSGT00940000155411.c #13	ENSGT00940000154880 #14	ENSGT00940000158711 #15	ENSGT01090000260253	ENSGT00390000017819 #17	ENSGT00940000157995 #18	ENSGT00390000013276.o.b	ENSGT00940000157492.b #19	ENSGT00960000192799	ENSGT00910000147866	ENSGT00390000000672.a.b #22	ENSGT00940000153147.m.a.a.a.a.a	ENSGT00390000008634 #23	ENSGT00940000155846 #25	ENSGT00390000011776.i.b.a	ENSGT00390000018086.z.h.a.b.a.a.a.c #26	ENSGT00940000158144	ENSGT00940000159267	ENSGT00940000156102	ENSGT00390000017079	ENSGT00940000155186.t.c.a	ENSGT00940000158156	ENSGT00550000074784.a.a.ed.g	ENSGT00390000000924	ENSGT00950000183049.A	ENSGT00940000160328
Bos_a	ANCESTRAL SPECIES	2	ENSGT00940000158953	ENSGT00610000086112	ENSGT00530000063907.c #10	ENSGT00940000157876 #11	ENSGT00990000212475	ENSGT00940000155411.c #13	ENSGT00940000154880 #14	ENSGT00940000158711 #15	ENSGT01090000260253	ENSGT00390000017819 #17	ENSGT00940000157995 #18	ENSGT00390000013276.o.b	ENSGT00940000157492.b #19	ENSGT00960000192799	ENSGT00910000147866	ENSGT00390000000672.a.b #22	ENSGT00940000153147.m.a.a.a.a.a	ENSGT00390000008634 #23	ENSGT00940000155846 #25	ENSGT00390000011776.i.b.a	ENSGT00940000158144	ENSGT00940000159267	ENSGT00940000156102	ENSGT00390000017079	ENSGT00940000155186.t.c.a	ENSGT00940000158156	ENSGT00550000074784.a.a.ed.g	ENSGT00390000000924	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C
Wild yak	MODERN SPECIES	1832													MEF2C (ENSBMUG00000015696) #19	ENSBMUG00000015929	ENSBMUG00000015931	TMEM161B (ENSBMUG00000015973) #22	ENSBMUG00000015985	CCNH (ENSBMUG00000016014) #23	RASA1 (ENSBMUG00000016181) #25	ENSBMUG00000016224	ENSBMUG00000016244 #26
Domestic yak	MODERN SPECIES	27	ENSBGRG00000006911	FAM172A (ENSBGRG00000006622) #10	NR2F1 (ENSBGRG00000006526) #11	ENSBGRG00000006497	ENSBGRG00000006489	ARRDC3 (ENSBGRG00000006397) #13	ENSBGRG00000006380	ADGRV1 (ENSBGRG00000005790) #14	LYSMD3 (ENSBGRG00000005743) #15	ENSBGRG00000005682	MBLAC2 (ENSBGRG00000005658) #17	CETN3 (ENSBGRG00000005546) #18	ENSBGRG00000005517	ENSBGRG00000005495	MEF2C (ENSBGRG00000003562) #19	TMEM161B (ENSBGRG00000003465) #22	ENSBGRG00000003441	CCNH (ENSBGRG00000003393) #23	RASA1 (ENSBGRG00000003000) #25	ENSBGRG00000002911	ENSBGRG00000002891 #26	ENSBGRG00000002876	EDIL3 (ENSBGRG00000002823)	HAPLN1 (ENSBGRG00000002793)	ENSBGRG00000002717	XRCC4 (ENSBGRG00000002672)	ENSBGRG00000002643	ENSBGRG00000002629	RPS23 (ENSBGRG00000002552)	ENSBGRG00000002531	ATG10 (ENSBGRG00000002509)
Bos_b	ANCESTRAL SPECIES	2	ENSGT00390000004985.a	ENSGT00940000156031	ENSGT00940000158953	ENSGT00610000086112	ENSGT00530000063907.c #10	ENSGT00940000157876 #11	ENSGT00940000155411.c #13	ENSGT00940000154880 #14	ENSGT00940000158711 #15	ENSGT01090000260253	ENSGT00390000017819 #17	ENSGT00940000157995 #18	ENSGT00390000013276.o.b	ENSGT00940000157492.b #19	ENSGT00910000147866	ENSGT00390000000672.a.b #22	ENSGT00940000153147.m.a.a.a.a.a	ENSGT00390000008634 #23	ENSGT00940000155846 #25	ENSGT00390000011776.i.b.a	ENSGT00390000018086.z.h.a.b.a.a.a.c #26	ENSGT00940000158144	ENSGT00940000159267	ENSGT00940000156102	ENSGT00390000017079	ENSGT00940000155186.t.c.a	ENSGT00940000158156	ENSGT00550000074784.a.a.ed.g	ENSGT00390000000924	ENSGT00950000183049.A	ENSGT00940000160328
Cow	MODERN SPECIES	26	SLF1 (ENSBTAG00000006107)	KIAA0825 (ENSBTAG00000003144)	FAM172A (ENSBTAG00000050195) #10	NR2F1 (ENSBTAG00000017599) #11	ARRDC3 (ENSBTAG00000007116) #13	ADGRV1 (ENSBTAG00000006031) #14	LYSMD3 (ENSBTAG00000027713) #15	POLR3G (ENSBTAG00000044077)	MBLAC2 (ENSBTAG00000013612) #17	ENSBTAG00000049440	CETN3 (ENSBTAG00000014373) #18	ENSBTAG00000050847	ENSBTAG00000003258	MEF2C (ENSBTAG00000020701) #19	ENSBTAG00000050008	TMEM161B (ENSBTAG00000008484) #22	ENSBTAG00000022762	CCNH (ENSBTAG00000009566) #23	ENSBTAG00000039523	RASA1 (ENSBTAG00000009565) #25	ENSBTAG00000037434	ENSBTAG00000039555 #26	EDIL3 (ENSBTAG00000044033)	HAPLN1 (ENSBTAG00000012411)	VCAN (ENSBTAG00000014906)	XRCC4 (ENSBTAG00000024275)	TMEM167A (ENSBTAG00000039591)	ATP6AP1L (ENSBTAG00000050733)	RPS23 (ENSBTAG00000013358)	ATG10 (ENSBTAG00000038117)	SSBP2 (ENSBTAG00000013856)
Hybrid Bos Indicus	MODERN SPECIES	26	FAM81B (ENSBIXG00005031156)	MCTP1 (ENSBIXG00005031181)	SLF1 (ENSBIXG00005031201)	KIAA0825 (ENSBIXG00005031212)	FAM172A (ENSBIXG00005031221) #10	ENSBIXG00005031231	NR2F1 (ENSBIXG00005031237) #11	ARRDC3 (ENSBIXG00005031257) #13	ADGRV1 (ENSBIXG00005031266) #14	LYSMD3 (ENSBIXG00005031273) #15	ENSBIXG00005031282	MBLAC2 (ENSBIXG00005031285) #17	CETN3 (ENSBIXG00005001585) #18	ENSBIXG00005001676	MEF2C (ENSBIXG00005005207) #19	TMEM161B (ENSBIXG00005028965) #22	ENSBIXG00005005066	CCNH (ENSBIXG00005028904) #23	RASA1 (ENSBIXG00005028839) #25	ENSBIXG00005006645	ENSBIXG00005002359	ENSBIXG00005002395 #26	ENSBIXG00005004944	ENSBIXG00005004939	EDIL3 (ENSBIXG00005028476)	HAPLN1 (ENSBIXG00005028378)	VCAN (ENSBIXG00005028318)	XRCC4 (ENSBIXG00005006967)	ENSBIXG00005028035	ENSBIXG00005007595	RPS23 (ENSBIXG00005027957)
American bison	MODERN SPECIES	3376	MCTP1 (ENSBBBG00000023391)	SLF1 (ENSBBBG00000023440)	KIAA0825 (ENSBBBG00000023466)	FAM172A (ENSBBBG00000023483) #10	NR2F1 (ENSBBBG00000023546) #11	ARRDC3 (ENSBBBG00000023568) #13	ADGRV1 (ENSBBBG00000006195) #14	LYSMD3 (ENSBBBG00000006198) #15	ENSBBBG00000023804	MBLAC2 (ENSBBBG00000023810) #17	ENSBBBG00000023818	CETN3 (ENSBBBG00000023843) #18	ENSBBBG00000023857	MEF2C (ENSBBBG00000011258) #19	ENSBBBG00000011292	TMEM161B (ENSBBBG00000011329) #22	ENSBBBG00000011338	ENSBBBG00000011354 #23	RASA1 (ENSBBBG00000009045) #25	ENSBBBG00000011444	ENSBBBG00000011455 #26
Siberian musk deer	MODERN SPECIES	64														MEF2C (ENSMMSG00000010714) #19	ENSMMSG00000010663	TMEM161B (ENSMMSG00000010530) #22	CCNH (ENSMMSG00000010425) #23	RASA1 (ENSMMSG00000009941) #25	ENSMMSG00000009859 #26	ENSMMSG00000009810	EDIL3 (ENSMMSG00000009709)	HAPLN1 (ENSMMSG00000009670)	VCAN (ENSMMSG00000009492)	XRCC4 (ENSMMSG00000009442)	TMEM167A (ENSMMSG00000009408)	ENSMMSG00000009376	RPS23 (ENSMMSG00000009338)	ATG10 (ENSMMSG00000009261)	ENSMMSG00000009140	ACOT12 (ENSMMSG00000008994)	ZCCHC9 (ENSMMSG00000008961)
Yarkand deer	MODERN SPECIES	32	FAM81B (ENSCHYG00000004584)	MCTP1 (ENSCHYG00000004399)	SLF1 (ENSCHYG00000004263)	KIAA0825 (ENSCHYG00000004130)	FAM172A (ENSCHYG00000004013) #10	ARRDC3 (ENSCHYG00000003906) #13	ADGRV1 (ENSCHYG00000003763) #14	LYSMD3 (ENSCHYG00000003721) #15	ENSCHYG00000003644	MBLAC2 (ENSCHYG00000003631) #17	CETN3 (ENSCHYG00000003610) #18	ENSCHYG00000003593	ENSCHYG00000003578	MEF2C (ENSCHYG00000003492) #19	ENSCHYG00000003464	TMEM161B (ENSCHYG00000003346) #22	CCNH (ENSCHYG00000003238) #23	RASA1 (ENSCHYG00000003079) #25	ENSCHYG00000003033 #26	EDIL3 (ENSCHYG00000002937)	HAPLN1 (ENSCHYG00000002889)	VCAN (ENSCHYG00000002720)	XRCC4 (ENSCHYG00000002672)	ENSCHYG00000002651	ENSCHYG00000002635	ENSCHYG00000002627	RPS23 (ENSCHYG00000002604)	ATG10 (ENSCHYG00000002572)	ENSCHYG00000002550	ENSCHYG00000002539	SSBP2 (ENSCHYG00000002111)
Camelidae	ANCESTRAL SPECIES	1	ENSGT00390000004985.a	ENSGT00940000156031	ENSGT00940000158953	ENSGT00610000086112	ENSGT00940000165983	ENSGT00530000063907.c #10	ENSGT00940000164293	ENSGT00940000157876 #11	ENSGT00940000155411.c #13	ENSGT00940000154880 #14	ENSGT00940000158711 #15	ENSGT01090000260129 #16	ENSGT00390000017819 #17	ENSGT00940000157995 #18	ENSGT00940000157492.b #19	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #25	ENSGT00390000018086.z #26	ENSGT00940000158144	ENSGT00940000159267	ENSGT00940000156102	ENSGT00390000017079	ENSGT00940000155186	ENSGT00940000158156	ENSGT00550000074784.a.a.ed	ENSGT00390000000924	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C	ENSGT00950000182772.B.a.a
Arabian camel	MODERN SPECIES	22	FAM81B (ENSCDRG00005012550)	MCTP1 (ENSCDRG00005012739)	SLF1 (ENSCDRG00005013652)	KIAA0825 (ENSCDRG00005013715)	FAM172A (ENSCDRG00005013822) #10	POU5F2 (ENSCDRG00005013944)	NR2F1 (ENSCDRG00005014004) #11	ENSCDRG00005014036	ARRDC3 (ENSCDRG00005014088) #13	ADGRV1 (ENSCDRG00005014220) #14	LYSMD3 (ENSCDRG00005014481) #15	ENSCDRG00005014536 #16	MBLAC2 (ENSCDRG00005014578) #17	CETN3 (ENSCDRG00005014609) #18	MEF2C (ENSCDRG00005014686) #19	TMEM161B (ENSCDRG00005015359) #22	CCNH (ENSCDRG00005015934) #23	RASA1 (ENSCDRG00005016008) #25	ENSCDRG00005016325 #26	EDIL3 (ENSCDRG00005016390)	ENSCDRG00005016462	HAPLN1 (ENSCDRG00005016491)	VCAN (ENSCDRG00005016571)	XRCC4 (ENSCDRG00005016772)	TMEM167A (ENSCDRG00005016802)	ENSCDRG00005016847	RPS23 (ENSCDRG00005016870)	ATG10 (ENSCDRG00005016936)	SSBP2 (ENSCDRG00005017010)	ACOT12 (ENSCDRG00005017206)	ZCCHC9 (ENSCDRG00005017268)
Alpaca	MODERN SPECIES	4530																TMEM161B (ENSVPAG00000009712) #22
Laurasiatheria_b	ANCESTRAL SPECIES	9	ENSGT00390000006564	ENSGT00940000158953	ENSGT00940000165033	ENSGT00940000165983	ENSGT00610000086112	ENSGT00530000063907.c #10	ENSGT00940000164293	ENSGT00940000157876 #11	ENSGT00940000155411.c #13	ENSGT00940000154880 #14	ENSGT00940000158711 #15	ENSGT01090000260129 #16	ENSGT00390000017819 #17	ENSGT00940000157995 #18	ENSGT00940000157492.b #19	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #25	ENSGT00390000018086.z.k #26	ENSGT00990000209137	ENSGT00940000158144	ENSGT01010000224334	ENSGT00940000159267	ENSGT00940000156102	ENSGT00390000017079	ENSGT00940000155186	ENSGT00940000158156	ENSGT00550000074784.a.a	ENSGT01100000263873	ENSGT01030000234916	ENSGT00550000074784.a.b
Laurasiatheria_c	ANCESTRAL SPECIES	7	ENSGT00390000016407	ENSGT00390000004985.a	ENSGT00940000156031	ENSGT00940000158953	ENSGT00610000086112	ENSGT00940000164293	ENSGT00530000063907.c #10	ENSGT00940000157876 #11	ENSGT00940000155411.c #13	ENSGT00940000154880 #14	ENSGT00940000158711 #15	ENSGT01090000260129 #16	ENSGT00390000017819 #17	ENSGT00940000157995 #18	ENSGT00940000157492.b #19	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #25	ENSGT00390000018086.z.k #26	ENSGT00990000209137	ENSGT00940000158144	ENSGT00940000159267	ENSGT00940000156102	ENSGT00390000017079	ENSGT00940000155186.p	ENSGT00940000158156	ENSGT00550000074784.a.a	ENSGT00390000000924	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C
Chiroptera	ANCESTRAL SPECIES	1	ENSGT00940000158982	ENSGT00390000016407	ENSGT00390000004985.a	ENSGT00940000156031	ENSGT00940000158953	ENSGT00610000086112	ENSGT00530000063907.c #10	ENSGT00940000157876 #11	ENSGT00940000155411.c #13	ENSGT00940000154880 #14	ENSGT00940000158711 #15	ENSGT01090000260129 #16	ENSGT00390000017819 #17	ENSGT00940000157995 #18	ENSGT00940000157492.b #19	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #25	ENSGT00390000018086.z.k #26	ENSGT00990000209137	ENSGT00940000158144	ENSGT00940000159267	ENSGT00940000156102	ENSGT00390000017079	ENSGT00940000155186.p	ENSGT00940000158156	ENSGT00550000074784.a.a	ENSGT00390000000924	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C
Megabat	MODERN SPECIES	1893																TMEM161B (ENSPVAG00000011985) #22
Microchiroptera	ANCESTRAL SPECIES	3	ENSGT00940000158982	ENSGT00390000016407	ENSGT00390000004985.a	ENSGT00940000156031	ENSGT00940000158953	ENSGT00610000086112	ENSGT00530000063907.c #10	ENSGT00940000157876 #11	ENSGT00940000155411.c #13	ENSGT00940000154880 #14	ENSGT00940000158711 #15	ENSGT01090000260129 #16	ENSGT00390000017819 #17	ENSGT00940000157995 #18	ENSGT00940000157492.b #19	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #25	ENSGT00390000018086.z.k #26	ENSGT00990000209137	ENSGT00940000158144	ENSGT00940000159267	ENSGT00940000156102	ENSGT00390000017079	ENSGT00940000155186.p	ENSGT00940000158156	ENSGT00550000074784.a.a	ENSGT00390000000924	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C
Microbat	MODERN SPECIES	937	SLF1 (ENSMLUG00000009211)	KIAA0825 (ENSMLUG00000008388)	FAM172A (ENSMLUG00000003067) #10	NR2F1 (ENSMLUG00000005238) #11	ENSMLUG00000026966	ENSMLUG00000023479	ENSMLUG00000028808	ARRDC3 (ENSMLUG00000009444) #13	ENSMLUG00000025001	ADGRV1 (ENSMLUG00000000281) #14	LYSMD3 (ENSMLUG00000030107) #15	ENSMLUG00000014954	MBLAC2 (ENSMLUG00000014952) #17	CETN3 (ENSMLUG00000029475) #18	MEF2C (ENSMLUG00000008230) #19	TMEM161B (ENSMLUG00000008633) #22	CCNH (ENSMLUG00000011533) #23	RASA1 (ENSMLUG00000011486) #25	ENSMLUG00000025365	ENSMLUG00000030456	COX7C (ENSMLUG00000026041) #26	ENSMLUG00000024030	ENSMLUG00000023755 #28	EDIL3 (ENSMLUG00000011587)	HAPLN1 (ENSMLUG00000001603)	VCAN (ENSMLUG00000013757)	XRCC4 (ENSMLUG00000013754)	TMEM167A (ENSMLUG00000008924)	ENSMLUG00000013943	ENSMLUG00000013939	ATG10 (ENSMLUG00000013935)
Greater horseshoe bat	MODERN SPECIES	25	SKIC3 (ENSRFEG00010007614)	FAM81B (ENSRFEG00010007483)	MCTP1 (ENSRFEG00010007150)	SLF1 (ENSRFEG00010007047)	KIAA0825 (ENSRFEG00010006998)	FAM172A (ENSRFEG00010021303) #10	NR2F1 (ENSRFEG00010021267) #11	ARRDC3 (ENSRFEG00010021249) #13	ENSRFEG00010021237	ADGRV1 (ENSRFEG00010021104) #14	LYSMD3 (ENSRFEG00010021070) #15	ENSRFEG00010021057 #16	MBLAC2 (ENSRFEG00010021048) #17	CETN3 (ENSRFEG00010021029) #18	MEF2C (ENSRFEG00010020935) #19	TMEM161B (ENSRFEG00010020897) #22	CCNH (ENSRFEG00010020861) #23	RASA1 (ENSRFEG00010020705) #25	ENSRFEG00010020642 #26	ENSRFEG00010020631	EDIL3 (ENSRFEG00010020588)	HAPLN1 (ENSRFEG00010020554)	VCAN (ENSRFEG00010020306)	XRCC4 (ENSRFEG00010020264)	ENSRFEG00010020237	ENSRFEG00010020195	RPS23 (ENSRFEG00010020074)	ATG10 (ENSRFEG00010020034)	ENSRFEG00010019999	SSBP2 (ENSRFEG00010019877)	ZCCHC9 (ENSRFEG00010019818)
Equus	ANCESTRAL SPECIES	6	ENSGT00390000016407	ENSGT00390000004985.a	ENSGT00940000156031	ENSGT00940000158953	ENSGT00610000086112	ENSGT00940000164293	ENSGT00530000063907.c #10	ENSGT00940000157876 #11	ENSGT00940000155411.c #13	ENSGT00940000154880 #14	ENSGT00940000158711 #15	ENSGT01090000260253	ENSGT00390000017819 #17	ENSGT00940000157995 #18	ENSGT00940000157492.b #19	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #25	ENSGT00390000018086.z.k #26	ENSGT00940000158144	ENSGT00940000159267	ENSGT00940000156102	ENSGT00390000017079	ENSGT00940000155186.p	ENSGT00940000158156	ENSGT00550000074784.a.b	ENSGT01100000266343	ENSGT00390000000924	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C
Donkey	MODERN SPECIES	2	SKIC3 (ENSEASG00005019460)	FAM81B (ENSEASG00005019474)	MCTP1 (ENSEASG00005019479)	SLF1 (ENSEASG00005019489)	KIAA0825 (ENSEASG00005019503)	ENSEASG00005019515	FAM172A (ENSEASG00005019511) #10	NR2F1 (ENSEASG00005019516) #11	ARRDC3 (ENSEASG00005019528) #13	ADGRV1 (ENSEASG00005019581) #14	LYSMD3 (ENSEASG00005035009) #15	ENSEASG00005031545	MBLAC2 (ENSEASG00005019649) #17	CETN3 (ENSEASG00005019651) #18	MEF2C (ENSEASG00005019654) #19	TMEM161B (ENSEASG00005019662) #22	CCNH (ENSEASG00005019665) #23	ENSEASG00005019674 #25	ENSEASG00005025821 #26	ENSEASG00005023790	ENSEASG00005017159	NUDT15 (ENSEASG00005017157)	SUCLA2 (ENSEASG00005017152)	HTR2A (ENSEASG00005017150)	ENSEASG00005017144	LRCH1 (ENSEASG00005017132)	RUBCNL (ENSEASG00005017123)	LRRC63 (ENSEASG00005034276)	LCP1 (ENSEASG00005017115)	CPB2 (ENSEASG00005017110)	ZC3H13 (ENSEASG00005017100)
Horse	MODERN SPECIES	5	SKIC3 (ENSECAG00000025048)	FAM81B (ENSECAG00000008942)	MCTP1 (ENSECAG00000010242)	SLF1 (ENSECAG00000015790)	KIAA0825 (ENSECAG00000018095)	FAM172A (ENSECAG00000018274) #10	NR2F1 (ENSECAG00000018508) #11	ARRDC3 (ENSECAG00000019506) #13	ADGRV1 (ENSECAG00000021057) #14	LYSMD3 (ENSECAG00000024495) #15	POLR3G (ENSECAG00000024548)	MBLAC2 (ENSECAG00000024647) #17	CETN3 (ENSECAG00000024704) #18	MEF2C (ENSECAG00000024716) #19	ENSECAG00000049214	TMEM161B (ENSECAG00000025094) #22	RASA1 (ENSECAG00000005203) #25	CCNH (ENSECAG00000001853) #23	ENSECAG00000030211 #26	EDIL3 (ENSECAG00000015388)	HAPLN1 (ENSECAG00000016477)	VCAN (ENSECAG00000019596)	XRCC4 (ENSECAG00000020269)	TMEM167A (ENSECAG00000026834)	ATP6AP1L (ENSECAG00000020318)	RPS23 (ENSECAG00000031968)	ENSECAG00000035044	ATG10 (ENSECAG00000026970)	SSBP2 (ENSECAG00000020782)	ACOT12 (ENSECAG00000021196)	ZCCHC9 (ENSECAG00000023186)
Carnivora	ANCESTRAL SPECIES	8	ENSGT00940000158953	ENSGT00940000165033	ENSGT00940000165983	ENSGT00390000006564	ENSGT00610000086112	ENSGT00530000063907.c #10	ENSGT00940000164293	ENSGT00940000157876 #11	ENSGT00940000155411.c #13	ENSGT00940000154880 #14	ENSGT00940000158711 #15	ENSGT01090000260129 #16	ENSGT00390000017819 #17	ENSGT00940000157995 #18	ENSGT00940000157492.b #19	ENSGT00390000000672.a.b #22	ENSGT00940000153064.b.d	ENSGT00950000183016.E.b.b.b	ENSGT00390000008634 #23	ENSGT00940000155846 #25	ENSGT00390000018086.z.k #26	ENSGT00990000209137	ENSGT00390000018086.z.j.b #26	ENSGT00940000158144	ENSGT01010000224334	ENSGT00940000159267	ENSGT00940000156102	ENSGT00390000017079	ENSGT00940000155186.q.b	ENSGT00940000158156	ENSGT00550000074784.a.a
Felidae	ANCESTRAL SPECIES	6	ENSGT00940000156031	ENSGT00940000158953	ENSGT00390000006564	ENSGT00610000086112	ENSGT00530000063907.c #10	ENSGT00940000164293	ENSGT00940000157876 #11	ENSGT00910000147795 #12	ENSGT00940000155411.c #13	ENSGT00940000154880 #14	ENSGT00940000158711 #15	ENSGT01090000260129 #16	ENSGT00390000017819 #17	ENSGT00940000157995 #18	ENSGT00940000157492.b #19	ENSGT00390000000672.a.b #22	ENSGT00940000153064.b.d.f.b.a	ENSGT00950000183016.E.b.b.b.o	ENSGT00390000008634 #23	ENSGT00940000155846 #25	ENSGT00390000018086.z.k.f #26	ENSGT00990000209137	ENSGT00940000158144	ENSGT00940000159267	ENSGT00940000156102	ENSGT00390000017079	ENSGT00940000155186.q.b	ENSGT00940000158156	ENSGT00550000074784.a.a	ENSGT01100000263873	ENSGT00390000000924
Panthera	ANCESTRAL SPECIES	6	ENSGT00940000156031	ENSGT00940000158953	ENSGT00390000006564	ENSGT00610000086112	ENSGT00530000063907.c #10	ENSGT00940000164293	ENSGT00940000157876 #11	ENSGT00910000147795 #12	ENSGT00940000155411.c #13	ENSGT00940000154880 #14	ENSGT00940000158711 #15	ENSGT01090000260129 #16	ENSGT00390000017819 #17	ENSGT00940000157995 #18	ENSGT00940000157492.b #19	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #25	ENSGT00390000018086.z.k.f #26	ENSGT00990000209137	ENSGT00940000158144	ENSGT00940000159267	ENSGT00940000156102	ENSGT00390000017079	ENSGT00940000155186.q.b	ENSGT01000000215143	ENSGT00940000158156	ENSGT00550000074784.a.a	ENSGT01100000263873	ENSGT00390000000924	ENSGT00950000183049.A
Tiger	MODERN SPECIES	134								ARRDC3 (ENSPTIG00000017076) #13	ENSPTIG00000017493 #14	ENSPTIG00000020703 #14	LYSMD3 (ENSPTIG00000018455) #15	ENSPTIG00000018989 #16	MBLAC2 (ENSPTIG00000019976) #17	CETN3 (ENSPTIG00000020886) #18	MEF2C (ENSPTIG00000021723) #19	TMEM161B (ENSPTIG00000016989) #22	CCNH (ENSPTIG00000019590) #23	RASA1 (ENSPTIG00000001406) #25	COX7C (ENSPTIG00000012097) #26	EDIL3 (ENSPTIG00000013147)	HAPLN1 (ENSPTIG00000015518)	ENSPTIG00000015827	XRCC4 (ENSPTIG00000018886)	TMEM167A (ENSPTIG00000020380)	ENSPTIG00000020576	ENSPTIG00000020744	RPS23 (ENSPTIG00000021170)	ENSPTIG00000006771	ATG10 (ENSPTIG00000007429)	SSBP2 (ENSPTIG00000010302)	ACOT12 (ENSPTIG00000016875)
Panthera_a	ANCESTRAL SPECIES	3	ENSGT00940000156031	ENSGT00390000006564	ENSGT00940000158953	ENSGT00610000086112	ENSGT00530000063907.c #10	ENSGT00940000164293	ENSGT00940000157876 #11	ENSGT00940000155411.c #13	ENSGT00940000154880 #14	ENSGT00940000158711 #15	ENSGT01090000260129 #16	ENSGT00390000017819 #17	ENSGT00940000157995 #18	ENSGT00940000157492.b #19	ENSGT00940000164415	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #25	ENSGT00390000018086.z.k.f #26	ENSGT00990000209137	ENSGT00940000158144	ENSGT00940000159267	ENSGT00940000156102	ENSGT00390000017079	ENSGT00940000155186.q.b	ENSGT01000000215143	ENSGT00940000158156	ENSGT00550000074784.a.a	ENSGT01100000263873	ENSGT00390000000924	ENSGT00950000183049.A
leopard	MODERN SPECIES	40								ARRDC3 (ENSPPRG00000024372) #13	ADGRV1 (ENSPPRG00000019300) #14	LYSMD3 (ENSPPRG00000006547) #15	ENSPPRG00000006320 #16	MBLAC2 (ENSPPRG00000006169) #17	CETN3 (ENSPPRG00000005808) #18	MEF2C (ENSPPRG00000004433) #19	ENSPPRG00000025023	TMEM161B (ENSPPRG00000025054) #22	CCNH (ENSPPRG00000019964) #23	RASA1 (ENSPPRG00000018762) #25	COX7C (ENSPPRG00000013235) #26	ENSPPRG00000013140	EDIL3 (ENSPPRG00000012668)	HAPLN1 (ENSPPRG00000011520)	ENSPPRG00000010678	XRCC4 (ENSPPRG00000008800)	ENSPPRG00000008129	ENSPPRG00000007337	ENSPPRG00000007261	RPS23 (ENSPPRG00000006877)	ENSPPRG00000005949	ATG10 (ENSPPRG00000005547)	SSBP2 (ENSPPRG00000004684)
lion	MODERN SPECIES		KIAA0825 (ENSPLOG00000010605)	FAM172A (ENSPLOG00000010788) #10	ENSPLOG00000010993	NR2F1 (ENSPLOG00000011053) #11	ENSPLOG00000011163	ENSPLOG00000011209	ARRDC3 (ENSPLOG00000011242) #13	ADGRV1 (ENSPLOG00000011381) #14	LYSMD3 (ENSPLOG00000012246) #15	ENSPLOG00000012266 #16	MBLAC2 (ENSPLOG00000012299) #17	ENSPLOG00000012328	CETN3 (ENSPLOG00000012412) #18	MEF2C (ENSPLOG00000012545) #19	ENSPLOG00000012737	TMEM161B (ENSPLOG00000012789) #22	CCNH (ENSPLOG00000012933) #23	RASA1 (ENSPLOG00000013077) #25	COX7C (ENSPLOG00000013360) #26	ENSPLOG00000013409	EDIL3 (ENSPLOG00000013439)	HAPLN1 (ENSPLOG00000013633)	VCAN (ENSPLOG00000013768)	ENSPLOG00000013906	XRCC4 (ENSPLOG00000013925)	ENSPLOG00000013980	ENSPLOG00000014059	ENSPLOG00000014144	ATG10 (ENSPLOG00000014220)	SSBP2 (ENSPLOG00000000026)	ACOT12 (ENSPLOG00000000044)
Cat	MODERN SPECIES		FAM81B (ENSFCAG00000013183)	MCTP1 (ENSFCAG00000014397)	SLF1 (ENSFCAG00000024671)	KIAA0825 (ENSFCAG00000028992)	FAM172A (ENSFCAG00000025443) #10	NR2F1 (ENSFCAG00000034642) #11	ENSFCAG00000024804	ARRDC3 (ENSFCAG00000019203) #13	ADGRV1 (ENSFCAG00000012405) #14	LYSMD3 (ENSFCAG00000029406) #15	ENSFCAG00000032444	MBLAC2 (ENSFCAG00000029005) #17	ENSFCAG00000024204	CETN3 (ENSFCAG00000022808) #18	MEF2C (ENSFCAG00000011595) #19	TMEM161B (ENSFCAG00000031564) #22	ENSFCAG00000050982	ENSFCAG00000048547	CCNH (ENSFCAG00000004828) #23	RASA1 (ENSFCAG00000004825) #25	COX7C (ENSFCAG00000034705) #26	ENSFCAG00000022528	ENSFCAG00000050071	EDIL3 (ENSFCAG00000002497)	HAPLN1 (ENSFCAG00000037432)	VCAN (ENSFCAG00000023191)	XRCC4 (ENSFCAG00000029944)	ENSFCAG00000045423	ENSFCAG00000046011	RPS23 (ENSFCAG00000008839)	ENSFCAG00000022315
Caniformia	DUPLICATION
Caniformia	ANCESTRAL SPECIES	5	ENSGT00390000016407	ENSGT00390000004985.a	ENSGT00940000156031	ENSGT00940000158953	ENSGT00610000086112	ENSGT00530000063907.c #10	ENSGT00940000164293	ENSGT00940000157876 #11	ENSGT00940000155411.c #13	ENSGT00940000154880 #14	ENSGT00940000158711 #15	ENSGT01090000260129 #16	ENSGT00390000017819 #17	ENSGT00940000157995 #18	ENSGT00940000157492.b #19	ENSGT00390000000672.a.b.a #22	ENSGT00390000000672.a.b.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #25	ENSGT00390000018086.z.j.b.a.a #26	ENSGT00390000018086.z.j.b.a.b #26	ENSGT00940000158144	ENSGT01010000224334	ENSGT00940000159267	ENSGT00940000156102	ENSGT00390000017079	ENSGT00940000155186.q.a	ENSGT00940000158156	ENSGT00550000074784.a.a	ENSGT01100000263873	ENSGT00390000000924
Canidae	ANCESTRAL SPECIES	52	ENSGT00940000158982	ENSGT00390000016407	ENSGT00390000004985.a	ENSGT00940000156031	ENSGT00940000158953	ENSGT00610000086112	ENSGT00530000063907.c #10	ENSGT00940000157876 #11	ENSGT00940000155411.c #13	ENSGT00940000154880 #14	ENSGT00940000158711 #15	ENSGT01090000260129.a #16	ENSGT00390000017819 #17	ENSGT00940000157995 #18	ENSGT00940000157492.b #19	ENSGT00390000000672.a.b.a #22	ENSGT00390000000672.a.b.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #25	ENSGT00390000018086.z.j.b.a.a #26	ENSGT00940000158144	ENSGT00940000159267	ENSGT00940000156102	ENSGT00390000017079	ENSGT00940000155186.q.a	ENSGT00940000158156	ENSGT00550000074784.a.a	ENSGT01100000263873	ENSGT00550000074784.b	ENSGT00390000000924	ENSGT00950000183049.A
Canis_lupus	ANCESTRAL SPECIES	9	ENSGT00940000158982	ENSGT00390000016407	ENSGT00390000004985.a	ENSGT00940000156031	ENSGT00940000158953	ENSGT00610000086112	ENSGT00530000063907.c #10	ENSGT00940000157876 #11	ENSGT00940000155411.c #13	ENSGT00940000154880 #14	ENSGT00940000158711 #15	ENSGT01090000260129.a #16	ENSGT00390000017819 #17	ENSGT00940000157995 #18	ENSGT00940000157492.b #19	ENSGT00390000000672.a.b.a #22	ENSGT00390000000672.a.b.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #25	ENSGT00390000018086.z.j.b.a.a #26	ENSGT00940000158144	ENSGT00940000159267	ENSGT00940000156102	ENSGT00390000017079	ENSGT00940000155186.q.a	ENSGT00940000158156	ENSGT00550000074784.b	ENSGT01100000263873	ENSGT00390000000924	ENSGT00950000183049.A	ENSGT00940000160328
Dingo	MODERN SPECIES	138	ENSCAFG00020006390	ENSCAFG00020006377	ENSCAFG00020006374	FAM172A (ENSCAFG00020006210) #10	NR2F1 (ENSCAFG00020006158) #11	ENSCAFG00020006119	ENSCAFG00020006057	ARRDC3 (ENSCAFG00020006041) #13	ENSCAFG00020006021 #14	ENSCAFG00020006001 #14	LYSMD3 (ENSCAFG00020005998) #15	ENSCAFG00020005997	MBLAC2 (ENSCAFG00020005995) #17	CETN3 (ENSCAFG00020005994) #18	MEF2C (ENSCAFG00020005345) #19	ENSCAFG00020005193 #22	ENSCAFG00020005076 #22	ENSCAFG00020005035	ENSCAFG00020005033	CCNH (ENSCAFG00020004794) #23	RASA1 (ENSCAFG00020003475) #25	ENSCAFG00020003332 #26	ENSCAFG00020003329	ENSCAFG00020003311	ENSCAFG00020003308	ENSCAFG00020003294	ENSCAFG00020003272	EDIL3 (ENSCAFG00020003249)	HAPLN1 (ENSCAFG00020003233)	ENSCAFG00020003203	ENSCAFG00020003191
Caniformia_b	ANCESTRAL SPECIES	4	ENSGT00390000016407	ENSGT00390000004985.a	ENSGT00940000156031	ENSGT00940000158953	ENSGT00610000086112	ENSGT00530000063907.c #10	ENSGT00940000164293	ENSGT00940000157876 #11	ENSGT00940000155411.c #13	ENSGT00940000154880 #14	ENSGT00940000158711 #15	ENSGT01090000260129 #16	ENSGT00390000017819 #17	ENSGT00940000157995 #18	ENSGT00940000157492.b #19	ENSGT00390000000672.a.b.a #22	ENSGT00390000000672.a.b.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #25	ENSGT00390000018086.z.j.b.a.b #26	ENSGT00940000158144	ENSGT01010000224334	ENSGT00940000159267	ENSGT00940000156102	ENSGT00390000017079	ENSGT00940000155186.q.a	ENSGT00940000155186.q.b	ENSGT00940000158156	ENSGT00550000074784.a.a	ENSGT01100000263873	ENSGT00390000000924
Ursidae	ANCESTRAL SPECIES	16	ENSGT00940000158982	ENSGT00390000016407	ENSGT00390000004985.a	ENSGT00940000156031	ENSGT00940000158953	ENSGT00610000086112	ENSGT00530000063907.c #10	ENSGT00940000157876 #11	ENSGT00940000155411.c #13	ENSGT00940000154880.rb #14	ENSGT00940000158711 #15	ENSGT01090000260129 #16	ENSGT00390000017819 #17	ENSGT00940000157995 #18	ENSGT00940000157492.b #19	ENSGT00390000000672.a.b.a #22	ENSGT00390000000672.a.b.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #25	ENSGT00390000018086.z.j.b.a.b #26	ENSGT00940000158144	ENSGT00940000159267	ENSGT00940000156102	ENSGT00390000017079	ENSGT00940000155186.q.a	ENSGT00940000158156	ENSGT00550000074784.a.a	ENSGT01100000263873	ENSGT00390000000924	ENSGT00950000183049.A.b	ENSGT00940000160328
Ursus	ANCESTRAL SPECIES	142	ENSGT00940000158982	ENSGT00390000016407	ENSGT00390000004985.a	ENSGT00940000156031	ENSGT00940000158953	ENSGT00940000165033	ENSGT00940000165983	ENSGT00530000063907.c #10	ENSGT00940000155411.c #13	ENSGT00940000154880.rb #14	ENSGT00940000158711 #15	ENSGT01090000260129 #16	ENSGT00390000017819 #17	ENSGT00940000157995 #18	ENSGT00940000157492.b #19	ENSGT00390000000672.a.b.a #22	ENSGT00390000000672.a.b.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #25
Polar bear	MODERN SPECIES	227					ENSUMAG00000005531	ENSUMAG00000005517	FAM172A (ENSUMAG00000005442) #10	ARRDC3 (ENSUMAG00000005422) #13	ADGRV1 (ENSUMAG00000005360) #14	LYSMD3 (ENSUMAG00000005355) #15	ENSUMAG00000005328 #16	MBLAC2 (ENSUMAG00000005321) #17	CETN3 (ENSUMAG00000005320) #18	MEF2C (ENSUMAG00000005305) #19	ENSUMAG00000005303	ENSUMAG00000005297 #22	TMEM161B (ENSUMAG00000005292) #22	ENSUMAG00000005284	CCNH (ENSUMAG00000005276) #23	RASA1 (ENSUMAG00000004678) #25	ENSUMAG00000004591	ENSUMAG00000004580 #26
Caniformia	ANCESTRAL SPECIES	5	ENSGT00390000004985.a	ENSGT00940000156031	ENSGT00940000158953	ENSGT00610000086112	ENSGT00530000063907.c #10	ENSGT00940000164293	ENSGT00940000157876 #11	ENSGT00940000155411.c #13	ENSGT00940000154880 #14	ENSGT00940000158711 #15	ENSGT01090000260129 #16	ENSGT00390000017819 #17	ENSGT00940000157995 #18	ENSGT00940000157492.b #19	ENSGT00390000000672.a.b.a #22	ENSGT00390000000672.a.b.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #25	ENSGT00390000018086.z.j.b.a.a #26	ENSGT00390000018086.z.j.b.a.b #26	ENSGT00940000158144	ENSGT01010000224334	ENSGT00940000159267	ENSGT00940000156102	ENSGT00390000017079	ENSGT00940000155186.q.a	ENSGT00940000158156	ENSGT00550000074784.a.a	ENSGT01100000263873	ENSGT00390000000924	ENSGT00950000183049.A
Caniformia_b	ANCESTRAL SPECIES	4	ENSGT00390000004985.a	ENSGT00940000156031	ENSGT00940000158953	ENSGT00610000086112	ENSGT00530000063907.c #10	ENSGT00940000164293	ENSGT00940000157876 #11	ENSGT00940000155411.c #13	ENSGT00940000154880 #14	ENSGT00940000158711 #15	ENSGT01090000260129 #16	ENSGT00390000017819 #17	ENSGT00940000157995 #18	ENSGT00940000157492.b #19	ENSGT00390000000672.a.b.a #22	ENSGT00390000000672.a.b.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #25	ENSGT00390000018086.z.j.b.a.b #26	ENSGT00940000158144	ENSGT01010000224334	ENSGT00940000159267	ENSGT00940000156102	ENSGT00390000017079	ENSGT00940000155186.q.a	ENSGT00940000155186.q.b	ENSGT00940000158156	ENSGT00550000074784.a.a	ENSGT01100000263873	ENSGT00390000000924	ENSGT00950000183049.A.b
Ursidae	ANCESTRAL SPECIES	16	ENSGT00390000016407	ENSGT00390000004985.a	ENSGT00940000156031	ENSGT00940000158953	ENSGT00610000086112	ENSGT00530000063907.c #10	ENSGT00940000157876 #11	ENSGT00940000155411.c #13	ENSGT00940000154880.rb #14	ENSGT00940000158711 #15	ENSGT01090000260129 #16	ENSGT00390000017819 #17	ENSGT00940000157995 #18	ENSGT00940000157492.b #19	ENSGT00390000000672.a.b.a #22	ENSGT00390000000672.a.b.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #25	ENSGT00390000018086.z.j.b.a.b #26	ENSGT00940000158144	ENSGT00940000159267	ENSGT00940000156102	ENSGT00390000017079	ENSGT00940000155186.q.a	ENSGT00940000158156	ENSGT00550000074784.a.a	ENSGT01100000263873	ENSGT00390000000924	ENSGT00950000183049.A.b	ENSGT00940000160328	ENSGT00950000183041.C
Ursus	ANCESTRAL SPECIES	142	ENSGT00390000016407	ENSGT00390000004985.a	ENSGT00940000156031	ENSGT00940000158953	ENSGT00940000165033	ENSGT00940000165983	ENSGT00530000063907.c #10	ENSGT00940000155411.c #13	ENSGT00940000154880.rb #14	ENSGT00940000158711 #15	ENSGT01090000260129 #16	ENSGT00390000017819 #17	ENSGT00940000157995 #18	ENSGT00940000157492.b #19	ENSGT00390000000672.a.b.a #22	ENSGT00390000000672.a.b.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #25
American black bear	DUPLICATION
American black bear	MODERN SPECIES	6232																ENSUAMG00000006197 #22	ENSUAMG00000006200 #22
American black bear	MODERN SPECIES	6232															ENSUAMG00000006197 #22	ENSUAMG00000006200 #22
Polar bear	MODERN SPECIES	227				ENSUMAG00000005531	ENSUMAG00000005517	FAM172A (ENSUMAG00000005442) #10	ARRDC3 (ENSUMAG00000005422) #13	ADGRV1 (ENSUMAG00000005360) #14	LYSMD3 (ENSUMAG00000005355) #15	ENSUMAG00000005328 #16	MBLAC2 (ENSUMAG00000005321) #17	CETN3 (ENSUMAG00000005320) #18	MEF2C (ENSUMAG00000005305) #19	ENSUMAG00000005303	ENSUMAG00000005297 #22	TMEM161B (ENSUMAG00000005292) #22	ENSUMAG00000005284	CCNH (ENSUMAG00000005276) #23	RASA1 (ENSUMAG00000004678) #25	ENSUMAG00000004591	ENSUMAG00000004580 #26
Giant Panda	MODERN SPECIES	13	FAM81B (ENSAMEG00000010710)	MCTP1 (ENSAMEG00000007915)	SLF1 (ENSAMEG00000007872)	KIAA0825 (ENSAMEG00000007828)	FAM172A (ENSAMEG00000006805) #10	NR2F1 (ENSAMEG00000003437) #11	ARRDC3 (ENSAMEG00000010468) #13	ENSAMEG00000027330	ADGRV1 (ENSAMEG00000013179) #14	ENSAMEG00000028431	LYSMD3 (ENSAMEG00000013235) #15	MBLAC2 (ENSAMEG00000026891) #17	ENSAMEG00000013240 #16	CETN3 (ENSAMEG00000013258) #18	MEF2C (ENSAMEG00000013271) #19	TMEM161B (ENSAMEG00000013309) #22	CCNH (ENSAMEG00000013328) #23	RASA1 (ENSAMEG00000013362) #25	COX7C (ENSAMEG00000013441) #26	EDIL3 (ENSAMEG00000004721)	HAPLN1 (ENSAMEG00000007517)	VCAN (ENSAMEG00000007464)	XRCC4 (ENSAMEG00000007459)	TMEM167A (ENSAMEG00000023466)	ENSAMEG00000027104	RPS23 (ENSAMEG00000015966)	ENSAMEG00000028746	ATG10 (ENSAMEG00000015949)	SSBP2 (ENSAMEG00000015913)	ACOT12 (ENSAMEG00000015867)	CKMT2 (ENSAMEG00000015838)
Mustelinae	ANCESTRAL SPECIES	38	ENSGT00390000004985.a	ENSGT00940000156031	ENSGT00940000158953	ENSGT00610000086112	ENSGT00530000063907.c #10	ENSGT00940000164293	ENSGT00940000157876 #11	ENSGT00940000165378	ENSGT00940000155411.c #13	ENSGT00940000154880 #14	ENSGT00940000158711 #15	ENSGT01100000264971	ENSGT00390000017819 #17	ENSGT00940000157995 #18	ENSGT00940000157492.b #19	ENSGT00390000000672.a.b.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #25	ENSGT00990000209137	ENSGT00940000158144	ENSGT01010000224334	ENSGT00940000159267	ENSGT00940000156102	ENSGT00390000017079	ENSGT00940000155186.q.b	ENSGT00940000158156	ENSGT00550000074784.a.a	ENSGT00390000000924	ENSGT00950000183049.A.b	ENSGT00940000160328	ENSGT00950000183041.C
American mink	MODERN SPECIES	119									ADGRV1 (ENSNVIG00000018907) #14	LYSM3 (ENSNVIG00000018880) #15	ENSNVIG00000018871	MBLC2 (ENSNVIG00000018860) #17	CETN3 (ENSNVIG00000018832) #18	ENSNVIG00000018814	MEF2C (ENSNVIG00000018410) #19	T161B (ENSNVIG00000018318) #22	CCNH (ENSNVIG00000018301) #23	RASA1 (ENSNVIG00000018196) #25	ENSNVIG00000018181
Ferret	MODERN SPECIES	231							ARRDC3 (ENSMPUG00000007709) #13	ADGRV1 (ENSMPUG00000007722) #14	LYSMD3 (ENSMPUG00000007898) #15	ENSMPUG00000007905	MBLAC2 (ENSMPUG00000007938) #17	CETN3 (ENSMPUG00000007940) #18	ENSMPUG00000019825	MEF2C (ENSMPUG00000007964) #19	ENSMPUG00000019826	TMEM161B (ENSMPUG00000007974) #22	CCNH (ENSMPUG00000007985) #23	RASA1 (ENSMPUG00000007995) #25	ENSMPUG00000008011	EDIL3 (ENSMPUG00000008054)	ENSMPUG00000008068	HAPLN1 (ENSMPUG00000008073)	VCAN (ENSMPUG00000008080)	XRCC4 (ENSMPUG00000008093)	ENSMPUG00000008101	RPS23 (ENSMPUG00000008114)	ATG10 (ENSMPUG00000008122)	ENSMPUG00000008145	ACOT12 (ENSMPUG00000008154)	ZCCHC9 (ENSMPUG00000008276)	CKMT2 (ENSMPUG00000008281)
Canidae	ANCESTRAL SPECIES	52	ENSGT00390000016407	ENSGT00390000004985.a	ENSGT00940000156031	ENSGT00940000158953	ENSGT00610000086112	ENSGT00530000063907.c #10	ENSGT00940000157876 #11	ENSGT00940000155411.c #13	ENSGT00940000154880 #14	ENSGT00940000158711 #15	ENSGT01090000260129.a #16	ENSGT00390000017819 #17	ENSGT00940000157995 #18	ENSGT00940000157492.b #19	ENSGT00390000000672.a.b.a #22	ENSGT00390000000672.a.b.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #25	ENSGT00390000018086.z.j.b.a.a #26	ENSGT00940000158144	ENSGT00940000159267	ENSGT00940000156102	ENSGT00390000017079	ENSGT00940000155186.q.a	ENSGT00940000158156	ENSGT00550000074784.a.a	ENSGT01100000263873	ENSGT00550000074784.b	ENSGT00390000000924	ENSGT00950000183049.A	ENSGT00940000160328
Red fox	MODERN SPECIES	11	MCTP1 (ENSVVUG00000022085)	ENSVVUG00000022095	SLF1 (ENSVVUG00000022098)	KIAA0825 (ENSVVUG00000022102)	FAM172A (ENSVVUG00000022112) #10	NR2F1 (ENSVVUG00000022129) #11	ENSVVUG00000022154	ENSVVUG00000022156	ARRDC3 (ENSVVUG00000022162) #13	ADGRV1 (ENSVVUG00000022179) #14	LYSMD3 (ENSVVUG00000022480) #15	POLR3G (ENSVVUG00000022482) #16	MBLAC2 (ENSVVUG00000022485) #17	CETN3 (ENSVVUG00000022496) #18	MEF2C (ENSVVUG00000022531) #19	TMEM161B (ENSVVUG00000022547) #22	CCNH (ENSVVUG00000022568) #23	RASA1 (ENSVVUG00000022666) #25	ENSVVUG00000023203	ENSVVUG00000023210 #26	EDIL3 (ENSVVUG00000023242)	HAPLN1 (ENSVVUG00000023246)	VCAN (ENSVVUG00000023253)	XRCC4 (ENSVVUG00000023262)	ENSVVUG00000023272	ENSVVUG00000023284	RPS23 (ENSVVUG00000023287)	ENSVVUG00000023289	ATG10 (ENSVVUG00000023291)	SSBP2 (ENSVVUG00000023314)	ACOT12 (ENSVVUG00000023325)
Canis_lupus	ANCESTRAL SPECIES	9	ENSGT00390000016407	ENSGT00390000004985.a	ENSGT00940000156031	ENSGT00940000158953	ENSGT00610000086112	ENSGT00530000063907.c #10	ENSGT00940000157876 #11	ENSGT00940000155411.c #13	ENSGT00940000154880 #14	ENSGT00940000158711 #15	ENSGT01090000260129.a #16	ENSGT00390000017819 #17	ENSGT00940000157995 #18	ENSGT00940000157492.b #19	ENSGT00390000000672.a.b.a #22	ENSGT00390000000672.a.b.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #25	ENSGT00390000018086.z.j.b.a.a #26	ENSGT00940000158144	ENSGT00940000159267	ENSGT00940000156102	ENSGT00390000017079	ENSGT00940000155186.q.a	ENSGT00940000158156	ENSGT00550000074784.b	ENSGT01100000263873	ENSGT00390000000924	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C
Dog	MODERN SPECIES	22	TTC37 (ENSCAFG00845013946)	ENSCAFG00845013980	FAM81B (ENSCAFG00845014005)	MCTP1 (ENSCAFG00845014193)	SLF1 (ENSCAFG00845014666)	KIAA0825 (ENSCAFG00845014903)	FAM172A (ENSCAFG00845015282) #10	NR2F1 (ENSCAFG00845015564) #11	ARRDC3 (ENSCAFG00845015988) #13	ADGRV1 (ENSCAFG00845016226) #14	LYSMD3 (ENSCAFG00845016559) #15	POLR3G (ENSCAFG00845016615) #16	MBLAC2 (ENSCAFG00845016669) #17	CETN3 (ENSCAFG00845016793) #18	MEF2C (ENSCAFG00845017289) #19	TMEM161B (ENSCAFG00845018131) #22	CCNH (ENSCAFG00845018630) #23	RASA1 (ENSCAFG00845018838) #25	ENSCAFG00845019491 #26	ENSCAFG00845019654	ENSCAFG00845019702	EDIL3 (ENSCAFG00845019823)	HAPLN1 (ENSCAFG00845019962)	VCAN (ENSCAFG00845020098)	XRCC4 (ENSCAFG00845020506)	TMEM167A (ENSCAFG00845020637)	ENSCAFG00845020741	RPS23 (ENSCAFG00845020943)	ENSCAFG00845021041	ENSCAFG00845021100	SSBP2 (ENSCAFG00845021264)
Dingo	MODERN SPECIES	138	ENSCAFG00020006377	ENSCAFG00020006374	FAM172A (ENSCAFG00020006210) #10	NR2F1 (ENSCAFG00020006158) #11	ENSCAFG00020006119	ENSCAFG00020006057	ARRDC3 (ENSCAFG00020006041) #13	ENSCAFG00020006021 #14	ENSCAFG00020006001 #14	LYSMD3 (ENSCAFG00020005998) #15	ENSCAFG00020005997	MBLAC2 (ENSCAFG00020005995) #17	CETN3 (ENSCAFG00020005994) #18	MEF2C (ENSCAFG00020005345) #19	ENSCAFG00020005193 #22	ENSCAFG00020005076 #22	ENSCAFG00020005035	ENSCAFG00020005033	CCNH (ENSCAFG00020004794) #23	RASA1 (ENSCAFG00020003475) #25	ENSCAFG00020003332 #26	ENSCAFG00020003329	ENSCAFG00020003311	ENSCAFG00020003308	ENSCAFG00020003294	ENSCAFG00020003272	EDIL3 (ENSCAFG00020003249)	HAPLN1 (ENSCAFG00020003233)	ENSCAFG00020003203	ENSCAFG00020003191	XRCC4 (ENSCAFG00020003038)
Atlantogenata	ANCESTRAL SPECIES		ENSGT00940000158982	ENSGT00390000016407	ENSGT00390000004985.a	ENSGT00940000156031	ENSGT00940000158953	ENSGT00610000086112	ENSGT00530000063907.c #10	ENSGT00940000157876 #11	ENSGT00940000155411.c #13	ENSGT00940000154880 #14	ENSGT00940000158711 #15	ENSGT01090000260129 #16	ENSGT00390000017819 #17	ENSGT00940000157995 #18	ENSGT00940000157492.b #19	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #25	ENSGT00390000018086 #26	ENSGT00940000158144	ENSGT00940000159267	ENSGT00940000156102	ENSGT00390000017079	ENSGT00940000155186	ENSGT00940000158156	ENSGT00550000074784.a.a	ENSGT00550000074784.b	ENSGT00390000000924	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C
Xenarthra	ANCESTRAL SPECIES	95	ENSGT00940000158982	ENSGT00390000016407	ENSGT00390000004985.a	ENSGT00940000156031	ENSGT00940000158953	ENSGT00610000086112	ENSGT00530000063907.c #10	ENSGT00940000157876 #11	ENSGT00940000155411.c #13	ENSGT00940000154880 #14	ENSGT00940000158711 #15	ENSGT01090000260129 #16	ENSGT00390000017819 #17	ENSGT00940000157995 #18	ENSGT00940000157492.b #19	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #25	ENSGT00390000018086 #26
Sloth	MODERN SPECIES	5128																TMEM161B (ENSCHOG00000010716) #22
Armadillo	MODERN SPECIES	2764	ENSDNOG00000047445	ENSDNOG00000039372	ENSDNOG00000031852	ENSDNOG00000047212	ARRDC3 (ENSDNOG00000007684) #13	ENSDNOG00000038531 #14	ENSDNOG00000041520 #14	ENSDNOG00000007596 #14	LYSMD3 (ENSDNOG00000034583) #15	ENSDNOG00000004195 #16	MBLAC2 (ENSDNOG00000036816) #17	CETN3 (ENSDNOG00000039817) #18	ENSDNOG00000047108	MEF2C (ENSDNOG00000000377) #19	ENSDNOG00000036264	TMEM161B (ENSDNOG00000004317) #22	ENSDNOG00000007765 #23	RASA1 (ENSDNOG00000036632) #25	ENSDNOG00000043218	ENSDNOG00000030811 #26	ENSDNOG00000038287
Afrotheria	ANCESTRAL SPECIES	12															ENSGT00940000157492.b #19	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #25	ENSGT00390000018086 #26	ENSGT00940000158144	ENSGT00940000159267	ENSGT00940000156102	ENSGT00940000155186	ENSGT00940000158156	ENSGT00550000074784.b	ENSGT00390000000924	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C	ENSGT00950000182772.B.a.a	ENSGT00940000155679
Afrotheria_a	ANCESTRAL SPECIES	12															ENSGT00940000157492.b #19	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #25	ENSGT00390000018086 #26	ENSGT00940000158144	ENSGT00940000159267	ENSGT00940000156102	ENSGT00940000155186	ENSGT00940000158156	ENSGT00550000074784.b	ENSGT00390000000924	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C	ENSGT00950000182772.B.a.a	ENSGT00940000155679
Elephant	MODERN SPECIES	526															MEF2C (ENSLAFG00000013761) #19	TMEM161B (ENSLAFG00000011097) #22	CCNH (ENSLAFG00000028032) #23	RASA1 (ENSLAFG00000011060) #25	COX7C (ENSLAFG00000017502) #26	EDIL3 (ENSLAFG00000017730)	HAPLN1 (ENSLAFG00000010769)	VCAN (ENSLAFG00000002716)	ENSLAFG00000011855	TMEM167A (ENSLAFG00000009206)	ENSLAFG00000013186	RPS23 (ENSLAFG00000031506)	ATG10 (ENSLAFG00000013183)	SSBP2 (ENSLAFG00000012776)	ACOT12 (ENSLAFG00000012765)	ZCCHC9 (ENSLAFG00000012763)	CKMT2 (ENSLAFG00000011587)
Hyrax	MODERN SPECIES	4732																TMEM161B (ENSPCAG00000000149) #22
Tenrec	MODERN SPECIES	5605																TMEM161B (ENSETEG00000014985) #22
Marsupialia	ANCESTRAL SPECIES	1	ENSGT00940000158982	ENSGT00390000016407	ENSGT00390000004985.a	ENSGT00940000156031	ENSGT00940000158953	ENSGT00610000086112	ENSGT00530000063907.c #10	ENSGT00940000157876 #11	ENSGT00940000155411.c #13	ENSGT00940000154880 #14	ENSGT00940000158711 #15	ENSGT01090000260129 #16	ENSGT00390000017819 #17	ENSGT00940000157995 #18	ENSGT00940000157492.b #19	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #25	ENSGT00390000018086 #26	ENSGT00390000001347.t	ENSGT00940000158144	ENSGT00940000159267	ENSGT00940000156102	ENSGT00390000017079	ENSGT00940000155186	ENSGT00940000158156	ENSGT00550000074784.b	ENSGT00550000074784.a.a	ENSGT00390000000924	ENSGT00950000183049.A	ENSGT00940000160328
Marsupialia_b	ANCESTRAL SPECIES	2	ENSGT00940000158982	ENSGT00390000016407	ENSGT00390000004985.a	ENSGT00940000156031	ENSGT00940000158953	ENSGT00610000086112	ENSGT00530000063907.c #10	ENSGT00940000157876 #11	ENSGT00940000155411.c #13	ENSGT00940000154880 #14	ENSGT00940000158711 #15	ENSGT01090000260129 #16	ENSGT00390000017819 #17	ENSGT00940000157995 #18	ENSGT00940000157492.b #19	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #25	ENSGT00390000018086 #26	ENSGT00390000001347.t	ENSGT00940000158144	ENSGT00940000159267	ENSGT00940000156102	ENSGT00390000017079	ENSGT00940000155186	ENSGT00940000158156	ENSGT00550000074784.a.a	ENSGT00390000000924	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C
Diprotodontia	ANCESTRAL SPECIES	1	ENSGT00390000016407	ENSGT00390000004985.a	ENSGT00940000156031	ENSGT00940000158953	ENSGT00610000086112	ENSGT00530000063907.c #10	ENSGT00940000157876 #11	ENSGT00940000155411.c #13	ENSGT00940000154880.kb #14	ENSGT00940000154880.jb #14	ENSGT00940000158711 #15	ENSGT01090000260129 #16	ENSGT00390000017819 #17	ENSGT00940000157995 #18	ENSGT00940000157492.b #19	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #25	ENSGT00390000018086 #26	ENSGT00390000001347.t	ENSGT00940000158144	ENSGT00940000159267	ENSGT00940000156102	ENSGT00390000017079	ENSGT00940000155186	ENSGT00940000158156	ENSGT00550000074784.a.a	ENSGT00390000000924	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C
Diprotodontia_a	ANCESTRAL SPECIES		ENSGT00390000016407	ENSGT00390000004985.a	ENSGT00940000156031	ENSGT00940000158953	ENSGT00610000086112	ENSGT00530000063907.c #10	ENSGT00940000157876 #11	ENSGT00940000155411.c #13	ENSGT00940000154880.kb #14	ENSGT00940000154880.jb #14	ENSGT00940000158711 #15	ENSGT01090000260129 #16	ENSGT00390000017819 #17	ENSGT00940000157995 #18	ENSGT00940000157492.b #19	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #25	ENSGT00390000018086 #26	ENSGT00390000001347.t	ENSGT00940000158144	ENSGT00940000159267	ENSGT00940000156102	ENSGT00390000017079	ENSGT00940000155186	ENSGT00940000158156	ENSGT00550000074784.a.a	ENSGT00390000000924	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C
koala	MODERN SPECIES	5	MCTP1 (ENSPCIG00000028564)	SLF1 (ENSPCIG00000028575)	KIAA0825 (ENSPCIG00000028606)	FAM172A (ENSPCIG00000028612) #10	NR2F1 (ENSPCIG00000028615) #11	ENSPCIG00000028622	ENSPCIG00000028447	ARRDC3 (ENSPCIG00000025721) #13	ENSPCIG00000000909 #14	ENSPCIG00000010004 #14	LYSMD3 (ENSPCIG00000004346) #15	ENSPCIG00000004353	MBLAC2 (ENSPCIG00000004357) #17	CETN3 (ENSPCIG00000004360) #18	MEF2C (ENSPCIG00000029504) #19	TMEM161B (ENSPCIG00000029514) #22	CCNH (ENSPCIG00000029526) #23	RASA1 (ENSPCIG00000029535) #25	ENSPCIG00000002439 #26	ENSPCIG00000003752	ENSPCIG00000002455	ENSPCIG00000036658	EDIL3 (ENSPCIG00000006442)	HAPLN1 (ENSPCIG00000007780)	ENSPCIG00000029893	XRCC4 (ENSPCIG00000029896)	ENSPCIG00000032700	ENSPCIG00000029898	ENSPCIG00000029899	ENSPCIG00000029901	ENSPCIG00000029902
Common wonbat	MODERN SPECIES	1013					SLF1 (ENSVURG00010017424)	KIAA0825 (ENSVURG00010017453)	FAM172A (ENSVURG00010017490) #10	ARRDC3 (ENSVURG00010017623) #13	ENSVURG00010017634 #14	ENSVURG00010017653 #14	LYSMD3 (ENSVURG00010017677) #15	ENSVURG00010017685 #16	MBLAC2 (ENSVURG00010017691) #17	CETN3 (ENSVURG00010017696) #18	MEF2C (ENSVURG00010017717) #19	TMEM161B (ENSVURG00010017759) #22	CCNH (ENSVURG00010017770) #23	RASA1 (ENSVURG00010017779) #25	ENSVURG00010017797 #26	ENSVURG00010017806	ENSVURG00010017815	ENSVURG00010017826	EDIL3 (ENSVURG00010017835)	HAPLN1 (ENSVURG00010017842)	ENSVURG00010017848	XRCC4 (ENSVURG00010017856)	ENSVURG00010017862	ENSVURG00010017874	ATG10 (ENSVURG00010017892)	ENSVURG00010017901	SSBP2 (ENSVURG00010017922)
Wallaby	MODERN SPECIES	6974																TMEM161B (ENSMEUG00000012159) #22
Tasmanian devil	MODERN SPECIES		SLF1 (ENSSHAG00000009650)	KIAA0825 (ENSSHAG00000010647)	FAM172A (ENSSHAG00000013743) #10	NR2F1 (ENSSHAG00000028061) #11	ENSSHAG00000020799	ARRDC3 (ENSSHAG00000012554) #13	ENSSHAG00000001791	ENSSHAG00000002123	ENSSHAG00000028977 #14	LYSMD3 (ENSSHAG00000030429) #15	ENSSHAG00000006647 #16	ENSSHAG00000024161 #17	CETN3 (ENSSHAG00000026337) #18	ENSSHAG00000023543	MEF2C (ENSSHAG00000010347) #19	TMEM161B (ENSSHAG00000032244) #22	ENSSHAG00000030553	CCNH (ENSSHAG00000016764) #23	RASA1 (ENSSHAG00000016807) #25	COX7C (ENSSHAG00000026810) #26	ENSSHAG00000006286	EDIL3 (ENSSHAG00000005209)	HAPLN1 (ENSSHAG00000022951)	ENSSHAG00000007330	XRCC4 (ENSSHAG00000009690)	TMEM167A (ENSSHAG00000029456)	ENSSHAG00000007765	ENSSHAG00000030156	ENSSHAG00000008347	ENSSHAG00000028481	ENSSHAG00000008505
Opossum	MODERN SPECIES	2	MCTP1 (ENSMODG00000020121)	SLF1 (ENSMODG00000020124)	KIAA0825 (ENSMODG00000020128)	ENSMODG00000044848	FAM172A (ENSMODG00000020131) #10	NR2F1 (ENSMODG00000020132) #11	ARRDC3 (ENSMODG00000020163) #13	ADGRV1 (ENSMODG00000020196) #14	ENSMODG00000020220 #15	ENSMODG00000020218	ENSMODG00000020221 #17	CETN3 (ENSMODG00000020222) #18	ENSMODG00000042795	MEF2C (ENSMODG00000020223) #19	ENSMODG00000020225	TMEM161B (ENSMODG00000020226) #22	CCNH (ENSMODG00000020228) #23	RASA1 (ENSMODG00000020235) #25	COX7C (ENSMODG00000037063) #26	ENSMODG00000024868	ENSMODG00000041038	ENSMODG00000045346	EDIL3 (ENSMODG00000020246)	HAPLN1 (ENSMODG00000038203)	ENSMODG00000020252	XRCC4 (ENSMODG00000020253)	ENSMODG00000040896	ENSMODG00000037212	RPS23 (ENSMODG00000020255)	ENSMODG00000024865	ENSMODG00000044614
Platypus	MODERN SPECIES		SKIC3 (ENSOANG00000011060)	ENSOANG00000011063	MCTP1 (ENSOANG00000011064)	SLF1 (ENSOANG00000011065)	KIAA0825 (ENSOANG00000011067)	FAM172A (ENSOANG00000011068) #10	NR2F1 (ENSOANG00000046139) #11	ARRDC3 (ENSOANG00000011069) #13	ENSOANG00000043317 #14	ENSOANG00000011071 #14	LYSMD3 (ENSOANG00000011072) #15	ENSOANG00000046173 #16	MBLAC2 (ENSOANG00000047148) #17	ENSOANG00000011075 #18	MEF2C (ENSOANG00000011076) #19	TMEM161B (ENSOANG00000011078) #22	CCNH (ENSOANG00000014752) #23	RASA1 (ENSOANG00000014753) #25	COX7C (ENSOANG00000014755) #26	ENSOANG00000048884	EDIL3 (ENSOANG00000014759)	HAPLN1 (ENSOANG00000014760)	ENSOANG00000014761	ENSOANG00000014765	TMEM167A (ENSOANG00000014766)	ENSOANG00000031637	ATG10 (ENSOANG00000020641)	SSBP2 (ENSOANG00000014767)	ACOT12 (ENSOANG00000014768)	ZCCHC9 (ENSOANG00000014769)	CKMT2 (ENSOANG00000014771)
Sauria	ANCESTRAL SPECIES	5	ENSGT00390000016407	ENSGT00390000004985.a	ENSGT00940000156031	ENSGT00940000158953	ENSGT00610000086112	ENSGT00530000063907.c.b #10	ENSGT00940000157876 #11	ENSGT00940000155411.c #13	ENSGT00940000154880 #14	ENSGT00940000158711 #15	ENSGT01030000235264	ENSGT00390000017819 #17	ENSGT00940000157995 #18	ENSGT00940000157492.b #19	ENSGT01080000257332.A	ENSGT00390000000672.a.b #22	ENSGT00940000154136	ENSGT00390000008634 #23	ENSGT00940000155846 #25	ENSGT00390000018086 #26	ENSGT00940000158144	ENSGT00940000159267	ENSGT00940000156102	ENSGT00390000017079	ENSGT00940000155186	ENSGT00940000158156	ENSGT00550000074784.b	ENSGT01040000241481	ENSGT00550000074784.a.a	ENSGT01030000234916	ENSGT01040000240833
Archelosauria	ANCESTRAL SPECIES	7	ENSGT00390000016407	ENSGT00390000004985.a	ENSGT00940000156031	ENSGT00940000158953	ENSGT00610000086112	ENSGT00530000063907.c.b #10	ENSGT00940000157876 #11	ENSGT00940000155411.c #13	ENSGT00940000154880 #14	ENSGT00940000158711 #15	ENSGT01030000235264	ENSGT00390000017819 #17	ENSGT00940000157995 #18	ENSGT00940000157492.b #19	ENSGT01080000257332.A.b	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #25	ENSGT00390000018086 #26	ENSGT00940000158144	ENSGT00940000159267	ENSGT00940000156102	ENSGT00390000017079	ENSGT00940000155186	ENSGT00940000158156	ENSGT00550000074784.b	ENSGT01040000241481	ENSGT00550000074784.a.a	ENSGT01030000234916	ENSGT01040000240833	ENSGT00550000074784.a.b
Archosauria	ANCESTRAL SPECIES	1	ENSGT00390000016407	ENSGT00390000004985.a	ENSGT00940000156031	ENSGT00940000158953	ENSGT00610000086112	ENSGT00530000063907.c.b #10	ENSGT00940000157876 #11	ENSGT00940000155411.c #13	ENSGT00940000154880 #14	ENSGT00940000158711 #15	ENSGT01030000235264	ENSGT00390000017819 #17	ENSGT00940000157995 #18	ENSGT00940000157492.b #19	ENSGT01080000257332.A.b	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #25	ENSGT00390000018086 #26	ENSGT00940000158144	ENSGT00940000159267	ENSGT00940000156102	ENSGT00390000017079	ENSGT00940000155186	ENSGT00940000158156	ENSGT00550000074784.b	ENSGT01040000241481	ENSGT00550000074784.a.a	ENSGT00390000000924	ENSGT00950000183049.A	ENSGT00940000160328
Australian saltwater crocodile	MODERN SPECIES	29	ARSK (ENSCPRG00005003817)	SKIC3 (ENSCPRG00005003135)	FAM81B (ENSCPRG00005003053)	MCTP1 (ENSCPRG00005003011)	SLF1 (ENSCPRG00005002977)	KIAA0825 (ENSCPRG00005002937)	FAM172A (ENSCPRG00005002912) #10	NR2F1 (ENSCPRG00005002896) #11	ARRDC3 (ENSCPRG00005002885) #13	ADGRV1 (ENSCPRG00005002739) #14	LYSMD3 (ENSCPRG00005002691) #15	ENSCPRG00005002687	MBLAC2 (ENSCPRG00005002685) #17	CETN3 (ENSCPRG00005002682) #18	MEF2C (ENSCPRG00005002661) #19	TMEM161B (ENSCPRG00005002646) #22	CCNH (ENSCPRG00005002621) #23	RASA1 (ENSCPRG00005002296) #25	COX7C (ENSCPRG00005002239) #26	ENSCPRG00005002231	EDIL3 (ENSCPRG00005002211)	HAPLN1 (ENSCPRG00005002178)	VCAN (ENSCPRG00005002150)	XRCC4 (ENSCPRG00005002138)	TMEM167A (ENSCPRG00005002127)	ENSCPRG00005002117	ENSCPRG00005002110	ENSCPRG00005002107	RPS23 (ENSCPRG00005002101)	ENSCPRG00005002095	ATG10 (ENSCPRG00005002089)
Aves	ANCESTRAL SPECIES	4	ENSGT00390000016407	ENSGT00390000004985.a	ENSGT00940000156031	ENSGT00940000158953	ENSGT00610000086112	ENSGT00530000063907.c.b #10	ENSGT00940000157876 #11	ENSGT00940000155411.c #13	ENSGT00940000154880 #14	ENSGT00940000158711 #15	ENSGT01030000235264	ENSGT00390000017819 #17	ENSGT00940000157995 #18	ENSGT00940000157492.b #19	ENSGT01080000257332.A.b	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846.q #25	ENSGT00390000018086 #26	ENSGT00940000158144	ENSGT00940000159267	ENSGT00940000156102	ENSGT00390000017079	ENSGT00940000155186	ENSGT00940000158156	ENSGT00550000074784.a.a	ENSGT00390000000924	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C	ENSGT00950000182772.B.a.a
African ostrich	MODERN SPECIES	207	ENSSCUG00000002636	RFESD (ENSSCUG00000002633)	ARSK (ENSSCUG00000002627)	SKIC3 (ENSSCUG00000002619)	FAM81B (ENSSCUG00000002616)	MCTP1 (ENSSCUG00000002612)	SLF1 (ENSSCUG00000002609)	KIAA0825 (ENSSCUG00000002604)	ARRDC3 (ENSSCUG00000002587) #13	ADGRV1 (ENSSCUG00000002570) #14	LYSMD3 (ENSSCUG00000002560) #15	ENSSCUG00000002557	CETN3 (ENSSCUG00000002551) #18	ENSSCUG00000002548	MEF2C (ENSSCUG00000002542) #19	TMEM161B (ENSSCUG00000002535) #22	CCNH (ENSSCUG00000002531) #23	RASA1 (ENSSCUG00000002498) #25	ENSSCUG00000002478
Neognathae	ANCESTRAL SPECIES	19	ENSGT00390000016407	ENSGT00390000004985.a	ENSGT00940000156031	ENSGT00940000158953	ENSGT00610000086112	ENSGT00530000063907.c.b #10	ENSGT00940000157876 #11	ENSGT00940000155411.c.b #13	ENSGT00940000154880 #14	ENSGT00940000158711 #15	ENSGT01030000235264	ENSGT00390000017819 #17	ENSGT00940000157995 #18	ENSGT00940000157492.b #19	ENSGT01080000257332.A.b	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846.q #25	ENSGT00390000018086 #26	ENSGT00940000158144	ENSGT00940000159267	ENSGT00940000156102	ENSGT00390000017079	ENSGT00940000155186	ENSGT00940000158156	ENSGT00550000074784.a.a	ENSGT00390000000924	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C	ENSGT00950000182772.B.a.a
Galloanserae	ANCESTRAL SPECIES	18	ENSGT00390000016407	ENSGT00390000004985.a	ENSGT00940000156031	ENSGT00940000158953	ENSGT00610000086112	ENSGT00530000063907.c.b #10	ENSGT00940000157876 #11	ENSGT00940000155411.c.b #13	ENSGT00940000154880 #14	ENSGT00940000158711 #15	ENSGT01030000235264	ENSGT00390000017819 #17	ENSGT00940000157995 #18	ENSGT00940000157492.b #19	ENSGT01080000257332.A.b.a.a	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846.q #25	ENSGT00390000018086 #26	ENSGT00940000158144	ENSGT00940000159267	ENSGT00940000156102	ENSGT00390000017079	ENSGT00940000155186	ENSGT00940000158156	ENSGT00550000074784.a.a	ENSGT00390000000924	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C	ENSGT00950000182772.B.a.a
Phasianidae	ANCESTRAL SPECIES	5	ENSGT00940000158982	ENSGT00390000016407	ENSGT00390000004985.a	ENSGT00940000156031	ENSGT00940000158953	ENSGT00610000086112	ENSGT00530000063907.c.b #10	ENSGT00940000157876 #11	ENSGT00940000155411.c.b #13	ENSGT00940000154880 #14	ENSGT00940000158711 #15	ENSGT01030000235264	ENSGT00390000017819 #17	ENSGT00940000157995 #18	ENSGT00940000157492.b #19	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846.q #25	ENSGT00390000018086 #26	ENSGT01070000254325.a.b.a	ENSGT00940000158144	ENSGT00940000159267	ENSGT00940000156102.k.a	ENSGT00390000017079	ENSGT00940000155186	ENSGT00940000158156	ENSGT00550000074784.a.a	ENSGT01030000234916	ENSGT00550000074784.b	ENSGT00390000000924	ENSGT00950000183049.A
Japanese quail	MODERN SPECIES	699	RFESD (ENSCJPG00005012760)	ARSK (ENSCJPG00005012761)	SKIC3 (ENSCJPG00005012762)	FAM81B (ENSCJPG00005012763)	MCTP1 (ENSCJPG00005012764)	SLF1 (ENSCJPG00005012768)	KIAA0825 (ENSCJPG00005012769)	FAM172A (ENSCJPG00005000113) #10	NR2F1 (ENSCJPG00005000146) #11	ARRDC3 (ENSCJPG00005000230) #13	ADGRV1 (ENSCJPG00005000279) #14	LYSMD3 (ENSCJPG00005000389) #15	ENSCJPG00005000390	CETN3 (ENSCJPG00005000396) #18	MEF2C (ENSCJPG00005000422) #19	TMEM161B (ENSCJPG00005000442) #22	CCNH (ENSCJPG00005000482) #23	RASA1 (ENSCJPG00005000488) #25	COX7C (ENSCJPG00005000502) #26	ENSCJPG00005000513	ENSCJPG00005000521	RPS23 (ENSCJPG00005000525)	EDIL3 (ENSCJPG00005000531)	HAPLN1 (ENSCJPG00005000544)	VCAN (ENSCJPG00005000555)	XRCC4 (ENSCJPG00005000577)	TMEM167A (ENSCJPG00005000681)	ATG10 (ENSCJPG00005000682)	SSBP2 (ENSCJPG00005000692)	ACOT12 (ENSCJPG00005000706)	ZCCHC9 (ENSCJPG00005000711)
Phasianidae_b	ANCESTRAL SPECIES	5	ENSGT00940000158982	ENSGT00390000016407	ENSGT00390000004985.a	ENSGT00940000156031	ENSGT00940000158953	ENSGT00610000086112	ENSGT00530000063907.c.b #10	ENSGT00940000157876 #11	ENSGT00940000155411.c.b #13	ENSGT00940000154880 #14	ENSGT00940000158711 #15	ENSGT01030000235264	ENSGT00390000017819 #17	ENSGT00940000157995 #18	ENSGT00940000157492.b #19	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846.q #25	ENSGT00390000018086 #26	ENSGT01070000254325.a.b.a	ENSGT00940000158144	ENSGT00940000159267	ENSGT00940000156102.k.a	ENSGT00390000017079	ENSGT00940000155186	ENSGT00940000158156	ENSGT00550000074784.a.a	ENSGT01030000234916	ENSGT00550000074784.b	ENSGT00390000000924	ENSGT00950000183049.A
Turkey	MODERN SPECIES	1299	ARSK (ENSMGAG00000008104)	SKIC3 (ENSMGAG00000016805)	FAM81B (ENSMGAG00000017108)	MCTP1 (ENSMGAG00000020039)	ENSMGAG00000019169	KIAA0825 (ENSMGAG00000008159)	FAM172A (ENSMGAG00000018212) #10	ENSMGAG00000021056 #14	ENSMGAG00000004687 #13	ENSMGAG00000022052 #14	LYSMD3 (ENSMGAG00000008206) #15	ENSMGAG00000008203	MBLAC2 (ENSMGAG00000020818) #17	CETN3 (ENSMGAG00000016928) #18	MEF2C (ENSMGAG00000021783) #19	TMEM161B (ENSMGAG00000008210) #22	CCNH (ENSMGAG00000008253) #23	RASA1 (ENSMGAG00000008292) #25	COX7C (ENSMGAG00000019652) #26	ENSMGAG00000008654	EDIL3 (ENSMGAG00000022807)	HAPLN1 (ENSMGAG00000020012)	ENSMGAG00000020049	ENSMGAG00000020009	ENSMGAG00000017132	XRCC4 (ENSMGAG00000018677)	ENSMGAG00000003952	RPS23 (ENSMGAG00000016932)	ENSMGAG00000020585	SSBP2 (ENSMGAG00000020044)	ACOT12 (ENSMGAG00000021238)
Chicken	MODERN SPECIES	131	TTC37 (ENSGALG00010013132)	FAM81B (ENSGALG00010013142)	MCTP1 (ENSGALG00010013149)	SLF1 (ENSGALG00010013327)	KIAA0825 (ENSGALG00010013410)	FAM172A (ENSGALG00010013497) #10	NR2F1 (ENSGALG00010013574) #11	ENSGALG00010014336	ARRDC3 (ENSGALG00010012830) #13	ADGRV1 (ENSGALG00010013001) #14	LYSMD3 (ENSGALG00010013085) #15	ENSGALG00010013097	MBLAC2 (ENSGALG00010012587) #17	CETN3 (ENSGALG00010013696) #18	MEF2C (ENSGALG00010007430) #19	TMEM161B (ENSGALG00010005477) #22	ENSGALG00010006074	ENSGALG00010006600	ENSGALG00010006034	ENSGALG00010005451	ENSGALG00010005976	ENSGALG00010006265	ENSGALG00010005947	ENSGALG00010006364	ENSGALG00010005908	ENSGALG00010006044	CCNH (ENSGALG00010005887) #23	ENSGALG00010005899 #25	COX7C (ENSGALG00010006252) #26	ENSGALG00010006257	ENSGALG00010005481
Anatidae	ANCESTRAL SPECIES	102								ENSGT00940000155411.c.b #13	ENSGT00940000154880 #14	ENSGT00940000158711 #15	ENSGT01030000235264	ENSGT00390000017819 #17	ENSGT00940000157995 #18	ENSGT00940000157492.b #19	ENSGT01080000257332.A.b.a.a.a.a.a.b	ENSGT00390000000672.a.b #22	ENSGT00960000189906.A	ENSGT00390000008634 #23	ENSGT00940000155846.q #25	ENSGT00390000018086 #26
Pink-footed goose	MODERN SPECIES	400																TMEM161B (ENSABRG00000014614) #22	ENSABRG00000014630
Duck	MODERN SPECIES	4281	ARSK (ENSAPLG00000005029)	SKIC3 (ENSAPLG00000004474)	FAM81B (ENSAPLG00000004389)	ENSAPLG00000019072	SLF1 (ENSAPLG00000004056)	KIAA0825 (ENSAPLG00000003907)	FAM172A (ENSAPLG00000004055) #10	ARRDC3 (ENSAPLG00000013315) #13	ADGRV1 (ENSAPLG00000008200) #14	LYSMD3 (ENSAPLG00000001247) #15	ENSAPLG00000008192	MBLAC2 (ENSAPLG00000001245) #17	CETN3 (ENSAPLG00000008041) #18	MEF2C (ENSAPLG00000011196) #19	ENSAPLG00000027924	TMEM161B (ENSAPLG00000010679) #22	ENSAPLG00000030736	CCNH (ENSAPLG00000005729) #23	RASA1 (ENSAPLG00000005627) #25	COX7C (ENSAPLG00000024728) #26	FRMPD1 (ENSAPLG00000014290)	ENSAPLG00000014388	DCAF10 (ENSAPLG00000010217)	ENSAPLG00000018153	POLR1E (ENSAPLG00000010340)	ZBTB5 (ENSAPLG00000001994)	GRHPR (ENSAPLG00000010737)	ZCCHC7 (ENSAPLG00000010747)	PAX5 (ENSAPLG00000010841)	ENSAPLG00000018109	ENSAPLG00000015923
Neognathae_b	ANCESTRAL SPECIES	5	ENSGT00940000158982	ENSGT00390000016407	ENSGT00390000004985.a	ENSGT00940000156031	ENSGT00940000158953	ENSGT00610000086112	ENSGT00530000063907.c.b #10	ENSGT00940000157876 #11	ENSGT00940000155411.c.b #13	ENSGT00940000154880 #14	ENSGT00940000158711 #15	ENSGT01030000235264	ENSGT00390000017819 #17	ENSGT00940000157995 #18	ENSGT00940000157492.b #19	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846.q #25	ENSGT00390000018086 #26	ENSGT00940000158144	ENSGT00940000159267	ENSGT00940000156102	ENSGT00390000017079	ENSGT00940000155186	ENSGT00940000158156	ENSGT00550000074784.a.a	ENSGT00390000000924	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C	ENSGT00950000182772.B.a.a.f
Neognathae_c	ANCESTRAL SPECIES	2	ENSGT00940000158982	ENSGT00390000016407	ENSGT00390000004985.a	ENSGT00940000156031	ENSGT00940000158953	ENSGT00610000086112	ENSGT00530000063907.c.b #10	ENSGT00940000157876 #11	ENSGT00940000155411.c.b #13	ENSGT00940000154880 #14	ENSGT00940000158711 #15	ENSGT01030000235264	ENSGT00390000017819 #17	ENSGT00940000157995 #18	ENSGT00940000157492.b #19	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846.q #25	ENSGT00390000018086 #26	ENSGT00940000158144	ENSGT00940000159267	ENSGT00940000156102	ENSGT00390000017079	ENSGT00940000155186	ENSGT00940000158156	ENSGT00550000074784.b	ENSGT00550000074784.a.b	ENSGT00390000000924	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C
Golden eagle	MODERN SPECIES	91	ENSACCG00020012542	MCTP1 (ENSACCG00020012665)	SLF1 (ENSACCG00020012849)	ENSACCG00020012899	ENSACCG00020012920	FAM172A (ENSACCG00020013051) #10	NR2F1 (ENSACCG00020013131) #11	ARRDC3 (ENSACCG00020013149) #13	ENSACCG00020013174 #14	ENSACCG00020013302 #14	LYSMD3 (ENSACCG00020013378) #15	ENSACCG00020013396	MBLAC2 (ENSACCG00020013405) #17	CETN3 (ENSACCG00020013416) #18	MEF2C (ENSACCG00020013466) #19	TMEM161B (ENSACCG00020013554) #22	CCNH (ENSACCG00020013615) #23	RASA1 (ENSACCG00020013845) #25	COX7C (ENSACCG00020013971) #26	EDIL3 (ENSACCG00020013998)	HAPLN1 (ENSACCG00020014033)	VCAN (ENSACCG00020014055)	XRCC4 (ENSACCG00020014071)	TMEM167A (ENSACCG00020014094)	ENSACCG00020014107	ENSACCG00020014125	ENSACCG00020014140	ATG10 (ENSACCG00020014163)	SSBP2 (ENSACCG00020014198)	ACOT12 (ENSACCG00020014240)	ZCCHC9 (ENSACCG00020014264)
Kakapo	MODERN SPECIES	19	ARSK (ENSSHBG00005002992)	ENSSHBG00005003009	SKIC3 (ENSSHBG00005003073)	MCTP1 (ENSSHBG00005003181)	SLF1 (ENSSHBG00005003296)	KIAA0825 (ENSSHBG00005003330)	FAM172A (ENSSHBG00005003361) #10	NR2F1 (ENSSHBG00005003375) #11	ENSSHBG00005003420 #13	ADGRV1 (ENSSHBG00005003448) #14	LYSMD3 (ENSSHBG00005003517) #15	ENSSHBG00005003528	MBLAC2 (ENSSHBG00005003534) #17	CETN3 (ENSSHBG00005003545) #18	MEF2C (ENSSHBG00005003556) #19	TMEM161B (ENSSHBG00005003651) #22	CCNH (ENSSHBG00005003674) #23	ENSSHBG00005003804 #25	COX7C (ENSSHBG00005004373) #26	EDIL3 (ENSSHBG00005001414)	ENSSHBG00005001456	HAPLN1 (ENSSHBG00005001483)	VCAN (ENSSHBG00005001512)	XRCC4 (ENSSHBG00005001575)	ENSSHBG00005001705	ENSSHBG00005001734	RPS23 (ENSSHBG00005001774)	ENSSHBG00005001802	ATG10 (ENSSHBG00005001819)	SSBP2 (ENSSHBG00005001883)	ENSSHBG00005001901
Passeriformes	ANCESTRAL SPECIES	38	ENSGT00940000176108	ENSGT00940000158982	ENSGT00390000016407	ENSGT00940000156031	ENSGT00940000158953	ENSGT00610000086112	ENSGT00530000063907.c.b #10	ENSGT00940000157876 #11	ENSGT00940000155411.c.b #13	ENSGT00940000154880 #14	ENSGT00940000158711 #15	ENSGT01030000235264	ENSGT00390000017819 #17	ENSGT00940000157995 #18	ENSGT00940000157492.b #19	ENSGT00390000000672.a.b #22	ENSGT01080000257494.A.a.a	ENSGT00390000008634 #23	ENSGT00940000155846.q #25
Great tit	MODERN SPECIES	642	PCSK5 (ENSPMJG00000006728)	ENSPMJG00000006698	ARSK (ENSPMJG00000006690)	SKIC3 (ENSPMJG00000006653)	MCTP1 (ENSPMJG00000006635)	SLF1 (ENSPMJG00000006589)	KIAA0825 (ENSPMJG00000006574)	FAM172A (ENSPMJG00000006455) #10	NR2F1 (ENSPMJG00000006410) #11	ARRDC3 (ENSPMJG00000006288) #13	ADGRV1 (ENSPMJG00000006174) #14	LYSMD3 (ENSPMJG00000006172) #15	MBLAC2 (ENSPMJG00000006171) #17	CETN3 (ENSPMJG00000006170) #18	MEF2C (ENSPMJG00000006158) #19	TMEM161B (ENSPMJG00000006155) #22	ENSPMJG00000006146	ENSPMJG00000006136	ENSPMJG00000006135	GRIN3A (ENSPMJG00000006124)	ENSPMJG00000006122	ENSPMJG00000005778	ALDOB (ENSPMJG00000005774)	ENSPMJG00000005759	ENSPMJG00000005756	PLPPR1 (ENSPMJG00000005754)	ENSPMJG00000005743	KCNN2 (ENSPMJG00000005733)	TRIM36 (ENSPMJG00000005711)	PGGT1B (ENSPMJG00000005704)	CCDC112 (ENSPMJG00000005699)
Passeriformes_d	ANCESTRAL SPECIES	36	ENSGT00940000155770	ENSGT00940000158982	ENSGT00390000016407	ENSGT00940000156031.b	ENSGT00940000158953	ENSGT00610000086112	ENSGT00530000063907.c.b #10	ENSGT00940000157876 #11	ENSGT00940000155411.c.b #13	ENSGT00940000154880 #14	ENSGT00940000158711 #15	ENSGT01030000235264	ENSGT00390000017819 #17	ENSGT00940000157995 #18	ENSGT00940000157492.b #19	ENSGT00390000000672.a.b #22	ENSGT01080000257494.A.a.a.b	ENSGT00390000008634 #23	ENSGT00940000155846.q #25	ENSGT00950000183112.b.a.b	ENSGT00410000028909	ENSGT00940000156579.q.b
Flycatcher	MODERN SPECIES	273																TMEM161B (ENSFALG00000010453) #22	ENSFALG00000015176	ENSFALG00000024263	CCNH (ENSFALG00000010462) #23	RASA1 (ENSFALG00000010471) #25	ENSFALG00000026498	ENSFALG00000023270	ENSFALG00000010499	ENSFALG00000019907	ENSFALG00000014835
Passeriformes_g	ANCESTRAL SPECIES	40	ENSGT00940000158982	ENSGT00390000016407	ENSGT00940000156031.b	ENSGT00940000156031.a	ENSGT00940000158953	ENSGT00610000086112	ENSGT00530000063907.c.b #10	ENSGT00940000157876 #11	ENSGT00940000155411.c.b #13	ENSGT00940000154880 #14	ENSGT00940000158711 #15	ENSGT01030000235264	ENSGT00390000017819 #17	ENSGT00940000157995 #18	ENSGT00940000157492.b #19	ENSGT00390000000672.a.b #22	ENSGT01080000257494.A.a.a.b	ENSGT00390000008634 #23	ENSGT00940000155846.q #25	ENSGT00950000183112.b.a.b	ENSGT00410000028909	ENSGT00940000156579.q.b
Medium ground finch	DUPLICATION
Medium ground finch	MODERN SPECIES	308																ENSGFOG00000002180 #22	ENSGFOG00000002198	CCNH (ENSGFOG00000002206) #23	ENSGFOG00000002237 #25	RGMB (ENSGFOG00000002505)	ENSGFOG00000002512
Medium ground finch	MODERN SPECIES	567																ENSGFOG00000011852 #22
Passeroidea	ANCESTRAL SPECIES	39	ENSGT00940000155770	ENSGT00940000158982	ENSGT00390000016407	ENSGT00940000156031.b	ENSGT00940000158953	ENSGT00610000086112	ENSGT00530000063907.c.b #10	ENSGT00940000157876 #11	ENSGT00940000155411.c.b #13	ENSGT00940000154880 #14	ENSGT00940000158711 #15	ENSGT01030000235264	ENSGT00390000017819 #17	ENSGT00940000157995 #18	ENSGT00940000157492.b #19	ENSGT00390000000672.a.b #22	ENSGT01080000257494.A.a.a.b	ENSGT00390000008634 #23	ENSGT00940000155846.q #25	ENSGT00950000183112.b.a.b	ENSGT00410000028909	ENSGT00940000156579.q.b
Zebra finch	MODERN SPECIES	104	KIAA0825 (ENSTGUG00000000720)	FAM172A (ENSTGUG00000000715) #10	ENSTGUG00000000674	NR2F1 (ENSTGUG00000027507) #11	ENSTGUG00000028273	ARRDC3 (ENSTGUG00000000705) #13	ADGRV1 (ENSTGUG00000000694) #14	LYSMD3 (ENSTGUG00000024098) #15	ENSTGUG00000024571	MBLAC2 (ENSTGUG00000021825) #17	CETN3 (ENSTGUG00000000683) #18	ENSTGUG00000027756	ENSTGUG00000025281	MEF2C (ENSTGUG00000023398) #19	ENSTGUG00000025596	TMEM161B (ENSTGUG00000000669) #22	ENSTGUG00000021942	ENSTGUG00000028249	ENSTGUG00000006415	PCSK1 (ENSTGUG00000006229)	ENSTGUG00000006246	CDC25B (ENSTGUG00000006284)	ENSTGUG00000006307	FKTN (ENSTGUG00000006322)	TAL2 (ENSTGUG00000028281)	TMEM38B (ENSTGUG00000027549)	ENSTGUG00000020764	ZNF462 (ENSTGUG00000006352)	RAD23B (ENSTGUG00000006372)	KLF4 (ENSTGUG00000006403)	ENSTGUG00000026787
Common canary	DUPLICATION
Common canary	MODERN SPECIES	35	OSTF1 (ENSSCAG00000007747)	PCSK5 (ENSSCAG00000007736)	ARSK (ENSSCAG00000007732)	SKIC3 (ENSSCAG00000007721)	MCTP1 (ENSSCAG00000007672)	SLF1 (ENSSCAG00000007650)	KIAA0825 (ENSSCAG00000007637)	FAM172A (ENSSCAG00000007618) #10	ENSSCAG00000007608	ENSSCAG00000007604 #13	ADGRV1 (ENSSCAG00000007465) #14	LYSMD3 (ENSSCAG00000007433) #15	MBLAC2 (ENSSCAG00000007428) #17	CETN3 (ENSSCAG00000007424) #18	MEF2C (ENSSCAG00000007403) #19	ENSSCAG00000007385 #22	ENSSCAG00000007378	CCNH (ENSSCAG00000007375) #23	ENSSCAG00000007291 #25	ENSSCAG00000007249	RGMB (ENSSCAG00000007246)	ENSSCAG00000006064	RIOK2 (ENSSCAG00000005807)	GRIN3A (ENSSCAG00000005801)	ENSSCAG00000005788
Common canary	MODERN SPECIES	233																ENSSCAG00000005562 #22
Cryptodira	ANCESTRAL SPECIES	9	ENSGT00940000156031	ENSGT00940000158953	ENSGT00610000086112	ENSGT00530000063907.c.a.b #10	ENSGT00940000165033	ENSGT00940000165983	ENSGT00530000063907.c.a.a #10	ENSGT00940000157876 #11	ENSGT00940000155411.c #13	ENSGT00940000154880 #14	ENSGT00940000158711 #15	ENSGT01030000235264	ENSGT00390000017819 #17	ENSGT00940000157995 #18	ENSGT00940000157492.b #19	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #25	ENSGT00390000018086 #26	ENSGT00940000158144	ENSGT00940000159267	ENSGT00940000156102	ENSGT00390000017079	ENSGT00940000155186	ENSGT00940000158156	ENSGT00550000074784.b	ENSGT00550000074784.a.a	ENSGT01040000240833	ENSGT00390000000924	ENSGT00950000183049.A	ENSGT00940000160328
Chinese turtle	MODERN SPECIES	1794					ENSPSIG00000010144 #10	NR2F1 (ENSPSIG00000010198) #11	ENSPSIG00000010496	ENSPSIG00000001379	ARRDC3 (ENSPSIG00000010705) #13	ADGRV1 (ENSPSIG00000011289) #14	LYSMD3 (ENSPSIG00000011799) #15	ENSPSIG00000011836	MBLAC2 (ENSPSIG00000001395) #17	CETN3 (ENSPSIG00000011904) #18	MEF2C (ENSPSIG00000012244) #19	TMEM161B (ENSPSIG00000012940) #22	ENSPSIG00000001410	CCNH (ENSPSIG00000012982) #23	RASA1 (ENSPSIG00000013601) #25
Testudinoidea	ANCESTRAL SPECIES	7	ENSGT00940000156031	ENSGT00940000158953	ENSGT00610000086112	ENSGT00530000063907.c.a.b #10	ENSGT00940000165033	ENSGT00940000165983	ENSGT00530000063907.c.a.a #10	ENSGT00940000157876 #11	ENSGT00940000155411.c #13	ENSGT00940000154880 #14	ENSGT00940000158711 #15	ENSGT01030000235264	ENSGT00390000017819 #17	ENSGT00940000157995 #18	ENSGT00940000157492.b #19	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #25	ENSGT00390000018086 #26	ENSGT00940000158144	ENSGT00940000159267	ENSGT00940000156102	ENSGT00390000017079	ENSGT00940000155186	ENSGT00940000158156	ENSGT00550000074784.b	ENSGT01040000240833	ENSGT00550000074784.a.a	ENSGT00390000000924	ENSGT00950000183049.A	ENSGT00940000160328
Testudinidae	ANCESTRAL SPECIES	15	ENSGT00390000016407	ENSGT00390000004985.a	ENSGT00940000156031	ENSGT00940000158953	ENSGT00940000165033	ENSGT00940000165983	ENSGT00530000063907.c.a.a #10	ENSGT00940000157876 #11	ENSGT00940000155411.c #13	ENSGT00940000154880 #14	ENSGT00940000158711 #15	ENSGT01030000235264	ENSGT00390000017819 #17	ENSGT00940000157995 #18	ENSGT00940000157492.b #19	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #25	ENSGT00390000018086 #26	ENSGT00940000158144	ENSGT00940000159267	ENSGT00940000156102	ENSGT00390000017079	ENSGT00940000155186	ENSGT00940000158156	ENSGT01040000240833.a	ENSGT00550000074784.a.a	ENSGT01040000240833.b	ENSGT00550000074784.b	ENSGT00390000000924	ENSGT00950000183049.A
Abingdon island giant tortoise	MODERN SPECIES	1065															MEF2C (ENSCABG00000008160) #19	TMEM161B (ENSCABG00000008150) #22
Goode s thornscrub tortoise	MODERN SPECIES	20	FAM81B (ENSGEVG00005005706)	MCTP1 (ENSGEVG00005005848)	SLF1 (ENSGEVG00005006161)	ENSGEVG00005006196	ENSGEVG00005006220	FAM172A (ENSGEVG00005006265) #10	NR2F1 (ENSGEVG00005006372) #11	ARRDC3 (ENSGEVG00005006404) #13	ENSGEVG00005006434	ADGRV1 (ENSGEVG00005006505) #14	LYSMD3 (ENSGEVG00005006783) #15	ENSGEVG00005006802	MBLAC2 (ENSGEVG00005006820) #17	CETN3 (ENSGEVG00005006845) #18	MEF2C (ENSGEVG00005006877) #19	TMEM161B (ENSGEVG00005006912) #22	CCNH (ENSGEVG00005006937) #23	RASA1 (ENSGEVG00005007316) #25	COX7C (ENSGEVG00005009127) #26	EDIL3 (ENSGEVG00005009290)	HAPLN1 (ENSGEVG00005010002)	ENSGEVG00005010195	ENSGEVG00005010286	XRCC4 (ENSGEVG00005010349)	TMEM167A (ENSGEVG00005010408)	ENSGEVG00005010430	ENSGEVG00005010461	RPS23 (ENSGEVG00005010591)	ENSGEVG00005010649	ENSGEVG00005010746	ATG10 (ENSGEVG00005010800)
Emydidae	ANCESTRAL SPECIES	7	ENSGT00390000016407	ENSGT00390000004985.a	ENSGT00940000156031	ENSGT00940000158953	ENSGT00610000086112	ENSGT00530000063907.c.a.b #10	ENSGT00530000063907.c.a.a #10	ENSGT00940000157876 #11	ENSGT00940000155411.c #13	ENSGT00940000154880.gb #14	ENSGT00940000158711 #15	ENSGT01030000235264	ENSGT00390000017819 #17	ENSGT00940000157995 #18	ENSGT00940000157492.b #19	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #25	ENSGT00390000018086 #26	ENSGT00940000158144	ENSGT00940000159267	ENSGT00940000156102	ENSGT00390000017079	ENSGT00940000155186	ENSGT00940000158156	ENSGT00550000074784.b	ENSGT01040000240833	ENSGT00550000074784.a.a	ENSGT00390000000924	ENSGT00950000183049.A	ENSGT00940000160328
painted turtle	MODERN SPECIES	695			ENSCPBG00000010531 #10	NR2F1 (ENSCPBG00000010532) #11	ARRDC3 (ENSCPBG00000010539) #13	ENSCPBG00000010545 #14	ENSCPBG00000010563 #14	ENSCPBG00000010580	ENSCPBG00000010585 #14	RHOA (ENSCPBG00000010596)	LYSMD3 (ENSCPBG00000010597) #15	ENSCPBG00000010601	MBLAC2 (ENSCPBG00000010603) #17	CETN3 (ENSCPBG00000010605) #18	MEF2C (ENSCPBG00000010619) #19	TMEM161B (ENSCPBG00000010638) #22	CCNH (ENSCPBG00000010650) #23	RASA1 (ENSCPBG00000010658) #25	ENSCPBG00000010666	COX7C (ENSCPBG00000010669) #26	ENSCPBG00000010674	EDIL3 (ENSCPBG00000010684)	HAPLN1 (ENSCPBG00000010699)	VCAN (ENSCPBG00000010709)	XRCC4 (ENSCPBG00000010726)	TMEM167A (ENSCPBG00000010731)	ENSCPBG00000010740	ENSCPBG00000010746	ENSCPBG00000010748	RPS23 (ENSCPBG00000010751)	ENSCPBG00000010753
Three-toed box turtle	DUPLICATION
Three-toed box turtle	MODERN SPECIES	2240																ENSTMTG00000023101 #22
Three-toed box turtle	MODERN SPECIES	29	ENSTMTG00000013783	MCTP1 (ENSTMTG00000013441)	ENSTMTG00000013389	ENSTMTG00000013375	KIAA0825 (ENSTMTG00000013360)	FAM172A (ENSTMTG00000013334) #10	NR2F1 (ENSTMTG00000013324) #11	ARRDC3 (ENSTMTG00000013310) #13	ENSTMTG00000013290 #14	ENSTMTG00000013154 #14	LYSMD3 (ENSTMTG00000013133) #15	ENSTMTG00000013128	MBLAC2 (ENSTMTG00000013121) #17	CETN3 (ENSTMTG00000013112) #18	MEF2C (ENSTMTG00000013068) #19	ENSTMTG00000013044 #22	CCNH (ENSTMTG00000013023) #23	RASA1 (ENSTMTG00000012988) #25	COX7C (ENSTMTG00000012967) #26	EDIL3 (ENSTMTG00000012653)	HAPLN1 (ENSTMTG00000012604)	ENSTMTG00000012578	ENSTMTG00000012555	XRCC4 (ENSTMTG00000012541)	TMEM167A (ENSTMTG00000012521)	ENSTMTG00000012494	ENSTMTG00000012480	ENSTMTG00000012462	ATG10 (ENSTMTG00000012339)	SSBP2 (ENSTMTG00000012293)	ENSTMTG00000012276
Lepidosauria	ANCESTRAL SPECIES	1	ENSGT00940000158982	ENSGT00390000016407	ENSGT00390000004985.a	ENSGT00940000156031	ENSGT00940000158953	ENSGT00610000086112	ENSGT00530000063907.c.b #10	ENSGT00940000157876 #11	ENSGT00940000155411.c #13	ENSGT00940000154880 #14	ENSGT00940000158711 #15	ENSGT01030000235264	ENSGT00390000017819 #17	ENSGT00940000157995 #18	ENSGT00940000157492.b #19	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #25	ENSGT00390000018086 #26	ENSGT00940000158144	ENSGT00940000154136	ENSGT00940000159267	ENSGT00940000156102	ENSGT00390000017079	ENSGT00940000155186	ENSGT00940000158156	ENSGT00550000074784.b	ENSGT01040000241481	ENSGT00550000074784.a.a	ENSGT01040000240833	ENSGT00390000000924
Episquamata	ANCESTRAL SPECIES	6	ENSGT00940000158982	ENSGT00390000016407	ENSGT00390000004985.a	ENSGT00940000156031	ENSGT00940000158953	ENSGT00610000086112	ENSGT00530000063907.c.b #10	ENSGT00940000157876 #11	ENSGT00940000155411.c #13	ENSGT00940000154880 #14	ENSGT00940000158711 #15	ENSGT01030000235264	ENSGT00390000017819 #17	ENSGT00940000157995 #18	ENSGT00940000157492.b #19	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #25	ENSGT00390000018086 #26	ENSGT00940000158144	ENSGT00940000159267	ENSGT00940000156102	ENSGT00390000017079	ENSGT00940000155186	ENSGT00940000158156	ENSGT00550000074784.b	ENSGT01040000241481	ENSGT00550000074784.a.a	ENSGT01040000240833	ENSGT00390000000924	ENSGT00950000183049.A
Laterata	ANCESTRAL SPECIES	8	ENSGT00390000004985.a	ENSGT00940000156031	ENSGT00940000158953	ENSGT00610000086112	ENSGT00940000165033	ENSGT00940000165983	ENSGT00530000063907.c.b #10	ENSGT00940000157876 #11	ENSGT00940000155411.c #13	ENSGT00940000154880 #14	ENSGT00940000158711 #15	ENSGT01030000235264	ENSGT00390000017819 #17	ENSGT00940000157995 #18	ENSGT00940000157492.b #19	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #25	ENSGT00390000018086 #26	ENSGT00940000158144	ENSGT00940000159267	ENSGT00940000156102	ENSGT00390000017079	ENSGT00940000155186	ENSGT00940000158156	ENSGT00390000000924	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C	ENSGT00950000182772.B.a.a	ENSGT00940000155679
Common wall lizard	MODERN SPECIES	2	MCTP1 (ENSPMRG00000013144)	ENSPMRG00000013110	ENSPMRG00000013080	KIAA0825 (ENSPMRG00000013013)	FAM172A (ENSPMRG00000012980) #10	NR2F1 (ENSPMRG00000012967) #11	ARRDC3 (ENSPMRG00000012951) #13	ADGRV1 (ENSPMRG00000012759) #14	LYSMD3 (ENSPMRG00000012703) #15	ENSPMRG00000012701	MBLAC2 (ENSPMRG00000012699) #17	CETN3 (ENSPMRG00000012695) #18	ENSPMRG00000012694	MEF2C (ENSPMRG00000012686) #19	ENSPMRG00000012673	TMEM161B (ENSPMRG00000012659) #22	CCNH (ENSPMRG00000012638) #23	RASA1 (ENSPMRG00000012629) #25	COX7C (ENSPMRG00000012625) #26	EDIL3 (ENSPMRG00000012616)	HAPLN1 (ENSPMRG00000012609)	ENSPMRG00000012606	ENSPMRG00000012576	ENSPMRG00000012564	XRCC4 (ENSPMRG00000012553)	TMEM167A (ENSPMRG00000012546)	ENSPMRG00000012542	ENSPMRG00000012537	ENSPMRG00000012535	RPS23 (ENSPMRG00000012532)	ENSPMRG00000012529
Argentine black and white tegu	MODERN SPECIES	10	FAM81B (ENSSMRG00000007900)	MCTP1 (ENSSMRG00000007859)	SLF1 (ENSSMRG00000007740)	ENSSMRG00000007737	ENSSMRG00000007735	FAM172A (ENSSMRG00000007712) #10	NR2F1 (ENSSMRG00000007704) #11	CETN3 (ENSSMRG00000007661) #18	ARRDC3 (ENSSMRG00000007657) #13	ADGRV1 (ENSSMRG00000007551) #14	LYSMD3 (ENSSMRG00000007513) #15	ENSSMRG00000007509	MBLAC2 (ENSSMRG00000007505) #17	ENSSMRG00000007503	MEF2C (ENSSMRG00000007471) #19	TMEM161B (ENSSMRG00000007438) #22	ENSSMRG00000007433	CCNH (ENSSMRG00000007424) #23	RASA1 (ENSSMRG00000007402) #25	COX7C (ENSSMRG00000007352) #26	EDIL3 (ENSSMRG00000007329)	ENSSMRG00000007280	HAPLN1 (ENSSMRG00000007276)	VCAN (ENSSMRG00000006719)	XRCC4 (ENSSMRG00000006677)	TMEM167A (ENSSMRG00000006663)	ENSSMRG00000006636	ENSSMRG00000006627	ENSSMRG00000006633	RPS23 (ENSSMRG00000006623)	ATG10 (ENSSMRG00000006616)
Toxicofera	ANCESTRAL SPECIES	6	ENSGT01050000244841.B.b	ENSGT00940000158982	ENSGT00390000016407	ENSGT00390000004985.a	ENSGT00940000156031	ENSGT00940000158953	ENSGT00610000086112	ENSGT00530000063907.c.b #10	ENSGT00940000157876 #11	ENSGT00940000155411.c #13	ENSGT00940000154880 #14	ENSGT00940000158711 #15	ENSGT00390000017819 #17	ENSGT00940000157995 #18	ENSGT00940000157492.b #19	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #25	ENSGT00390000018086 #26	ENSGT01030000235102	ENSGT00940000158144	ENSGT00940000159267	ENSGT00940000156102	ENSGT00390000017079	ENSGT00940000155186	ENSGT00940000158156	ENSGT00550000074784.b	ENSGT01040000240833	ENSGT00550000074784.a.a	ENSGT00390000000924	ENSGT00950000183049.A
Elapidae	ANCESTRAL SPECIES	7	ENSGT01050000244841.B.b	ENSGT00940000158982	ENSGT00390000016407	ENSGT00390000004985.a	ENSGT00940000156031	ENSGT00940000158953.g	ENSGT00610000086112	ENSGT00530000063907.c.b #10	ENSGT00940000157876 #11	ENSGT00940000155411.c #13	ENSGT00940000154880 #14	ENSGT00940000158711 #15	ENSGT00390000017819 #17	ENSGT00940000157995 #18	ENSGT00940000157492.b #19	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #25	ENSGT01030000235102	ENSGT00940000158144	ENSGT00940000159267	ENSGT00940000156102	ENSGT00390000017079	ENSGT00940000155186	ENSGT00940000158156	ENSGT00550000074784.b.b	ENSGT00550000074784.b.a.a	ENSGT01040000240833	ENSGT00390000000924	ENSGT00950000183049.A	ENSGT00940000160328
Indian cobra	DUPLICATION
Indian cobra	MODERN SPECIES	1	SKIC3 (ENSNNAG00000000720)	ENSNNAG00000000778	MCTP1 (ENSNNAG00000000798)	ENSNNAG00000000933	ENSNNAG00000000954	KIAA0825 (ENSNNAG00000000974)	FAM172A (ENSNNAG00000001060) #10	NR2F1 (ENSNNAG00000001101) #11	ARRDC3 (ENSNNAG00000001125) #13	ADGRV1 (ENSNNAG00000001181) #14	LYSMD3 (ENSNNAG00000001322) #15	MBLAC2 (ENSNNAG00000001338) #17	CETN3 (ENSNNAG00000001354) #18	MEF2C (ENSNNAG00000001372) #19	ENSNNAG00000001402 #22	ENSNNAG00000001415 #22	CCNH (ENSNNAG00000001430) #23	RASA1 (ENSNNAG00000001568) #25	ENSNNAG00000002013	EDIL3 (ENSNNAG00000002046)	HAPLN1 (ENSNNAG00000002181)	ENSNNAG00000002196	XRCC4 (ENSNNAG00000002227)	TMEM167A (ENSNNAG00000002280)	ENSNNAG00000002286	ENSNNAG00000002292	ENSNNAG00000002308	ENSNNAG00000002327	ENSNNAG00000002336	ATG10 (ENSNNAG00000002344)	SSBP2 (ENSNNAG00000002360)
Indian cobra	MODERN SPECIES	1	ARSK (ENSNNAG00000000660)	SKIC3 (ENSNNAG00000000720)	ENSNNAG00000000778	MCTP1 (ENSNNAG00000000798)	ENSNNAG00000000933	ENSNNAG00000000954	KIAA0825 (ENSNNAG00000000974)	FAM172A (ENSNNAG00000001060) #10	NR2F1 (ENSNNAG00000001101) #11	ARRDC3 (ENSNNAG00000001125) #13	ADGRV1 (ENSNNAG00000001181) #14	LYSMD3 (ENSNNAG00000001322) #15	MBLAC2 (ENSNNAG00000001338) #17	CETN3 (ENSNNAG00000001354) #18	MEF2C (ENSNNAG00000001372) #19	ENSNNAG00000001402 #22	ENSNNAG00000001415 #22	CCNH (ENSNNAG00000001430) #23	RASA1 (ENSNNAG00000001568) #25	ENSNNAG00000002013	EDIL3 (ENSNNAG00000002046)	HAPLN1 (ENSNNAG00000002181)	ENSNNAG00000002196	XRCC4 (ENSNNAG00000002227)	TMEM167A (ENSNNAG00000002280)	ENSNNAG00000002286	ENSNNAG00000002292	ENSNNAG00000002308	ENSNNAG00000002327	ENSNNAG00000002336	ATG10 (ENSNNAG00000002344)
Elapidae_a	ANCESTRAL SPECIES	9	ENSGT01050000244841.B.b	ENSGT00940000158982	ENSGT00390000016407	ENSGT00390000004985.a	ENSGT00940000156031	ENSGT00940000158953.g	ENSGT00610000086112	ENSGT00530000063907.c.b #10	ENSGT00940000157876 #11	ENSGT00940000155411.c #13	ENSGT00940000154880 #14	ENSGT00940000158711 #15	ENSGT00390000017819 #17	ENSGT00940000157995 #18	ENSGT00940000157492.b #19	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #25	ENSGT01030000235102	ENSGT00940000158144	ENSGT00940000159267	ENSGT00940000156102	ENSGT00390000017079	ENSGT00940000155186	ENSGT00940000158156	ENSGT00550000074784.b.b	ENSGT00550000074784.b.a.a	ENSGT01040000240833.e	ENSGT00390000000924	ENSGT00950000183049.A	ENSGT00940000160328
Acanthophiinae	ANCESTRAL SPECIES	9	ENSGT01050000244841.B.b	ENSGT00940000158982	ENSGT00390000016407	ENSGT00390000004985.a	ENSGT00940000156031	ENSGT00940000158953.g	ENSGT00610000086112	ENSGT00530000063907.c.b #10	ENSGT00940000157876 #11	ENSGT00940000155411.c #13	ENSGT00940000154880 #14	ENSGT00940000158711 #15	ENSGT00390000017819 #17	ENSGT00940000157995 #18	ENSGT00940000157492.b #19	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #25	ENSGT01030000235102	ENSGT00940000158144	ENSGT00940000159267	ENSGT00940000156102	ENSGT00390000017079	ENSGT00940000155186	ENSGT00940000158156	ENSGT00550000074784.b.b	ENSGT00550000074784.b.a.a	ENSGT01040000240833.e	ENSGT00390000000924	ENSGT00950000183049.A	ENSGT00940000160328
Eastern brown snake	MODERN SPECIES	2	FAM81B (ENSPTXG00000005139)	MCTP1 (ENSPTXG00000005122)	ENSPTXG00000005121	ENSPTXG00000005120	KIAA0825 (ENSPTXG00000005117)	FAM172A (ENSPTXG00000005114) #10	NR2F1 (ENSPTXG00000005112) #11	ENSPTXG00000005110	ARRDC3 (ENSPTXG00000005107) #13	ENSPTXG00000005106 #14	ENSPTXG00000005103 #14	LYSMD3 (ENSPTXG00000005102) #15	MBLAC2 (ENSPTXG00000005101) #17	CETN3 (ENSPTXG00000005100) #18	MEF2C (ENSPTXG00000005099) #19	TMEM161B (ENSPTXG00000005097) #22	CCNH (ENSPTXG00000005096) #23	RASA1 (ENSPTXG00000005095) #25	ENSPTXG00000005093	EDIL3 (ENSPTXG00000004710)	HAPLN1 (ENSPTXG00000004709)	ENSPTXG00000004708	XRCC4 (ENSPTXG00000004688)	TMEM167A (ENSPTXG00000004687)	ENSPTXG00000004686	ENSPTXG00000004685	ENSPTXG00000004684	ENSPTXG00000004683	ENSPTXG00000004682	ENSPTXG00000004681	ATG10 (ENSPTXG00000004680)
Mainland tiger snake	MODERN SPECIES	1	SKIC3 (ENSNSUG00000006204)	FAM81B (ENSNSUG00000006197)	MCTP1 (ENSNSUG00000006182)	ENSNSUG00000006180	ENSNSUG00000006178	KIAA0825 (ENSNSUG00000006158)	FAM172A (ENSNSUG00000006156) #10	NR2F1 (ENSNSUG00000006155) #11	ARRDC3 (ENSNSUG00000006123) #13	ENSNSUG00000006121 #14	ENSNSUG00000006114 #14	LYSMD3 (ENSNSUG00000006111) #15	MBLAC2 (ENSNSUG00000006110) #17	CETN3 (ENSNSUG00000006108) #18	MEF2C (ENSNSUG00000005871) #19	TMEM161B (ENSNSUG00000005819) #22	CCNH (ENSNSUG00000005790) #23	RASA1 (ENSNSUG00000004867) #25	ENSNSUG00000004862	ENSNSUG00000004860	EDIL3 (ENSNSUG00000004852)	HAPLN1 (ENSNSUG00000004848)	ENSNSUG00000004844	XRCC4 (ENSNSUG00000004725)	TMEM167A (ENSNSUG00000004709)	ENSNSUG00000004706	ENSNSUG00000004701	ENSNSUG00000004696	ATG10 (ENSNSUG00000004695)	SSBP2 (ENSNSUG00000004681)	ENSNSUG00000004679
Blue-lipped sea krait	MODERN SPECIES	6147																TMEM161B (ENSLLTG00000003270) #22
Lizard	MODERN SPECIES	1	KIAA0825 (ENSACAG00000013284)	ENSACAG00000036248	ENSACAG00000039274	FAM172A (ENSACAG00000013305) #10	ENSACAG00000042609	ENSACAG00000041925	ENSACAG00000036598	NR2F1 (ENSACAG00000013324) #11	ARRDC3 (ENSACAG00000013384) #13	ADGRV1 (ENSACAG00000013431) #14	LYSMD3 (ENSACAG00000035122) #15	MBLAC2 (ENSACAG00000013646) #17	ENSACAG00000038915	ENSACAG00000041753	MEF2C (ENSACAG00000000488) #19	TMEM161B (ENSACAG00000000583) #22	ENSACAG00000044209	CCNH (ENSACAG00000000627) #23	RASA1 (ENSACAG00000000769) #25	COX7C (ENSACAG00000001016) #26	ENSACAG00000009101	ENSACAG00000038280	EDIL3 (ENSACAG00000011454)	HAPLN1 (ENSACAG00000011432)	ENSACAG00000037910	VCAN (ENSACAG00000011195)	ENSACAG00000037657	XRCC4 (ENSACAG00000011160)	TMEM167A (ENSACAG00000011153)	ENSACAG00000037915	ENSACAG00000011136
tuatara	MODERN SPECIES	1826															MEF2C (ENSSPUG00000007634) #19	TMEM161B (ENSSPUG00000008032) #22	CCNH (ENSSPUG00000008064) #23	RASA1 (ENSSPUG00000008166) #25
Anura	ANCESTRAL SPECIES	9	ENSGT00940000158982	ENSGT00390000016407	ENSGT00390000004985.a	ENSGT00940000156031	ENSGT00940000158953	ENSGT00610000086112	ENSGT00530000063907.c #10	ENSGT00940000157876 #11	ENSGT00940000155411.c #13	ENSGT00940000154880 #14	ENSGT00940000158711 #15	ENSGT01090000262566	ENSGT00390000017819 #17	ENSGT00940000157995 #18	ENSGT00940000157492.b #19	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #25	ENSGT00390000018086 #26	ENSGT00940000158144	ENSGT00940000159267	ENSGT00940000156102	ENSGT00390000017079	ENSGT00940000155186	ENSGT00940000158156	ENSGT01090000262138	ENSGT00550000074784.b	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00940000155679	ENSGT00550000074949
Frog	MODERN SPECIES		mctp1 (ENSXETG00000013380)	ENSXETG00000042832	slf1 (ENSXETG00000013387)	kiaa0825 (ENSXETG00000013392)	fam172a (ENSXETG00000011592) #10	ENSXETG00000049303	nr2f1 (ENSXETG00000011594) #11	arrdc3 (ENSXETG00000018085) #13	adgrv1 (ENSXETG00000019628) #14	lysmd3 (ENSXETG00000019627) #15	polr3g (ENSXETG00000037832)	ENSXETG00000047093	cetn3 (ENSXETG00000039666) #17	mef2c (ENSXETG00000007038) #19	ENSXETG00000042997	tmem161b (ENSXETG00000011719) #22	ccnh (ENSXETG00000011718) #23	rasa1 (ENSXETG00000011717) #25	ENSXETG00000040223	ENSXETG00000049068	cox7c (ENSXETG00000025081) #26	ENSXETG00000035340	edil3 (ENSXETG00000019793)	hapln1 (ENSXETG00000019797)	vcan (ENSXETG00000027815)	xrcc4 (ENSXETG00000027814)	tmem167a (ENSXETG00000027813)	ENSXETG00000039925	atp6ap1l (ENSXETG00000030377)	rps23 (ENSXETG00000027811)	ENSXETG00000039289
Leishan spiny toad	MODERN SPECIES		ENSLLEG00000003037	FAM172A (ENSLLEG00000002992) #10	NR2F1 (ENSLLEG00000002960) #11	ENSLLEG00000002913	ENSLLEG00000002903	ENSLLEG00000002897	ENSLLEG00000002894 #13	ADGRV1 (ENSLLEG00000002700) #14	LYSMD3 (ENSLLEG00000002640) #15	ENSLLEG00000002604	MBLAC2 (ENSLLEG00000002593) #17	CETN3 (ENSLLEG00000002555) #18	ENSLLEG00000002534	MEF2C (ENSLLEG00000002434) #19	ENSLLEG00000002375	TMEM161B (ENSLLEG00000002331) #22	ENSLLEG00000002303	CCNH (ENSLLEG00000002231) #23	RASA1 (ENSLLEG00000002067) #25	ENSLLEG00000002025	ENSLLEG00000002019	COX7C (ENSLLEG00000001998) #26	ENSLLEG00000001989	ENSLLEG00000001981	EDIL3 (ENSLLEG00000001894)	ENSLLEG00000001869	HAPLN1 (ENSLLEG00000001856)	ENSLLEG00000001847	ENSLLEG00000001829	ENSLLEG00000001820	ENSLLEG00000001812
Coelacanth	MODERN SPECIES	584															MEF2C (ENSLACG00000012125) #19	TMEM161B (ENSLACG00000015320) #22
Actinopterygii	ANCESTRAL SPECIES	67	ENSGT00390000004985.a	ENSGT00660000097118	ENSGT00940000156031	ENSGT00940000158953	ENSGT00610000086112	ENSGT00940000165983	ENSGT00530000063907.c #10	ENSGT00940000157876 #11	ENSGT00940000155411.c #13	ENSGT00940000154880 #14	ENSGT00940000158711 #15	ENSGT01030000235264	ENSGT00390000017819 #17	ENSGT00940000157995 #18	ENSGT00940000157492.b #19	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #25	ENSGT00390000018086 #26	ENSGT00940000158144	ENSGT00940000159267	ENSGT00940000156102	ENSGT00940000166544	ENSGT00940000155186	ENSGT00390000000924	ENSGT00950000183049.E	ENSGT00940000160328	ENSGT00950000183041.C	ENSGT00950000182772.B.a.a	ENSGT00940000155679	ENSGT00550000074949
Neopterygii	ANCESTRAL SPECIES	46	ENSGT00390000004985.a	ENSGT00660000097118	ENSGT00940000156031	ENSGT00940000158953	ENSGT00610000086112	ENSGT00940000165983	ENSGT00530000063907.c #10	ENSGT00940000157876 #11	ENSGT00940000155411.c #13	ENSGT00940000154880 #14	ENSGT00940000158711 #15	ENSGT00940000165856	ENSGT00390000017819 #17	ENSGT00940000157995 #18	ENSGT00940000157492.b #19	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #25	ENSGT00390000018086 #26	ENSGT00940000158144	ENSGT00940000159267	ENSGT00940000156102	ENSGT00940000166544	ENSGT00940000155186	ENSGT00940000166014	ENSGT00390000000924	ENSGT00950000183049.E	ENSGT00940000160328	ENSGT00950000183041.C	ENSGT00950000182772.B.a.a	ENSGT00940000155679
Osteoglossocephalai	ANCESTRAL SPECIES	132	ENSGT00940000158953	ENSGT00940000165033	ENSGT00970000198392	ENSGT00940000167566	ENSGT00610000086112	ENSGT00940000165983	ENSGT00530000063907.c #10	ENSGT00940000157876 #11	ENSGT00940000155411.c #13	ENSGT00940000154880 #14	ENSGT00940000158711 #15	ENSGT00940000165856	ENSGT01040000240520	ENSGT00390000017819 #17	ENSGT00940000157492.b #19	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #25	ENSGT00390000018086 #26	ENSGT00940000158144.a	ENSGT00940000158144.b	ENSGT00940000159267	ENSGT00940000156102.r	ENSGT00940000166544	ENSGT00940000155186	ENSGT00940000166014	ENSGT00390000000924	ENSGT00950000183049.E	ENSGT00940000160328	ENSGT00950000183041.C	ENSGT00950000182772.B.a.a
Osteoglossiformes	ANCESTRAL SPECIES	142	ENSGT00390000006030.d.b	ENSGT00940000158873	ENSGT00940000161418	ENSGT00940000158067.b	ENSGT00940000157699	ENSGT00940000160372.b	ENSGT00940000160516.h	ENSGT00940000158866	ENSGT00940000161769.b.b	ENSGT00940000156031.e.b	ENSGT00940000157876 #11	ENSGT00940000155411.c #13	ENSGT00940000158711 #15	ENSGT00940000157995 #18	ENSGT00940000157492.a ##19	ENSGT00390000000672.a.b #22	ENSGT00940000158144.b	ENSGT00940000158144.a	ENSGT00940000159267	ENSGT00940000156102.q	ENSGT00940000155186.a	ENSGT00940000166014	ENSGT00950000183049.E.a	ENSGT00940000155679.c	ENSGT00550000074949	ENSGT00940000165661.b	ENSGT00390000012355.A.a.b	ENSGT00530000063681.b.a	ENSGT00940000166823	ENSGT00390000015930	ENSGT00940000155771.d
P. kingsleyae	MODERN SPECIES	110								ENSPKIG00000005279	MCTP1 (ENSPKIG00000005391)	NR2F1 (ENSPKIG00000005614) #11	ENSPKIG00000005622	ENSPKIG00000005640 #13	lysmd3 (ENSPKIG00000005668) #15	cetn3 (ENSPKIG00000005747) #18	mef2ca (ENSPKIG00000005809) ##19	tmem161b (ENSPKIG00000005884) #22	RASA1 (ENSPKIG00000005956) #25	ENSPKIG00000006055	EDIL3 (ENSPKIG00000006122)	HAPLN1 (ENSPKIG00000006269)	ENSPKIG00000006325	ENSPKIG00000006348	xrcc4 (ENSPKIG00000006359)	tmem167a (ENSPKIG00000006381)	atg10 (ENSPKIG00000006450)	ENSPKIG00000006542	ACOT12 (ENSPKIG00000006605)	zcchc9 (ENSPKIG00000006659)	ckmt2a (ENSPKIG00000006702)	RASGRF2 (ENSPKIG00000006766)
Asian bonytongue	MODERN SPECIES	21	SEZ6L (ENSSFOG00015032848)	ENSSFOG00015031141	npm2b (ENSSFOG00015010466)	MYO18B (ENSSFOG00015010505)	grk3 (ENSSFOG00015010675)	cryba4 (ENSSFOG00015025272)	ENSSFOG00015010822	acads (ENSSFOG00015010959)	cldn5b (ENSSFOG00015027119)	MCTP1 (ENSSFOG00015011025)	nr2f1a (ENSSFOG00015028103) #11	ENSSFOG00015011118 #13	ENSSFOG00015029012 #15	ENSSFOG00015025437	mef2ca (ENSSFOG00015011194) ##19	tmem161b (ENSSFOG00015011239) #22	RASA1 (ENSSFOG00015011306) #25	EDIL3 (ENSSFOG00015011393)	ENSSFOG00015031680	HAPLN1 (ENSSFOG00015011424)	xrcc4 (ENSSFOG00015011484)	tmem167a (ENSSFOG00015011502)	atg10 (ENSSFOG00015027963)	zcchc9 (ENSSFOG00015011594)	ckmt2a (ENSSFOG00015011609)	dhfr (ENSSFOG00015025319)	ENSSFOG00015011648	rad17 (ENSSFOG00015011680)	MARVELD2 (ENSSFOG00015011712)	oclna (ENSSFOG00015011809)	ERAP1 (ENSSFOG00015011891)
Clupeocephala	ANCESTRAL SPECIES	130	ENSGT00940000156031.e	ENSGT00940000158953	ENSGT00940000165033	ENSGT00970000198392	ENSGT00940000167566	ENSGT00610000086112	ENSGT00940000165983	ENSGT00530000063907.c #10	ENSGT00940000157876 #11	ENSGT00940000155411.c #13	ENSGT00940000154880 #14	ENSGT00940000158711 #15	ENSGT01100000263701	ENSGT00390000017819 #17	ENSGT00940000157492.b #19	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #25	ENSGT00390000018086 #26	ENSGT00940000158144.a	ENSGT00940000166906	ENSGT00940000156102.q.a.b	ENSGT00940000156102.q.b	ENSGT00940000156102.r	ENSGT00940000166544	ENSGT00940000155186	ENSGT00940000166014	ENSGT00940000164012.C	ENSGT00940000164012.B	ENSGT00950000183049.E	ENSGT01050000244840.A.a.b.e
Otomorpha	ANCESTRAL SPECIES	87	ENSGT00940000158866	ENSGT00940000161769.b.b	ENSGT00940000159913.b	ENSGT00940000159913.a.b	ENSGT00940000156031.f	ENSGT00940000160879	ENSGT00940000157876.c #11	ENSGT00940000164012.A	ENSGT00940000157876.d #11	ENSGT00940000155411.c #13	ENSGT00940000154880 #14	ENSGT00940000158711 #15	ENSGT01100000263701	ENSGT00390000017819 #17	ENSGT00940000157492.b #19	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #25	ENSGT00390000018086 #26	ENSGT00940000158144.a	ENSGT00940000166906	ENSGT00940000156102.q.a.b	ENSGT00940000156102.q.b	ENSGT00940000166014	ENSGT00940000164012.C	ENSGT00940000164012.B	ENSGT00950000183049.E	ENSGT01050000244840.A.a.b.e	ENSGT00950000183076.a.b.a	ENSGT01050000244840.A.b.b.a	ENSGT00950000182940.b.b.e
Clupeiformes	ANCESTRAL SPECIES	77	ENSGT00940000156290.a	ENSGT01050000244898.b.b.e.a	ENSGT00940000158529	ENSGT00940000156035	ENSGT01080000257489	ENSGT01030000234997	ENSGT01000000214878	ENSGT00940000157298	ENSGT00940000162168	ENSGT00940000163761	ENSGT00940000159174.f	ENSGT00940000158711 #15	ENSGT01040000240520	ENSGT00390000017819 #17	ENSGT00940000157492.b #19	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #25	ENSGT00390000018086 #26	ENSGT00940000158144.a	ENSGT00940000156102.q.b	ENSGT00940000166014	ENSGT00940000164012.C	ENSGT00940000164012.B	ENSGT00950000183049.E	ENSGT01050000244840.A.a.b.e	ENSGT00950000183076.a.b.a	ENSGT01050000244840.A.b.b.a	ENSGT00950000182940.b.b.e	ENSGT00940000164571	ENSGT00940000154170.A
Atlantic herring	MODERN SPECIES	23	mob1ba (ENSCHAG00000010808)	GRSF1 (ENSCHAG00000010995)	rufy3 (ENSCHAG00000011029)	ENSCHAG00000012187	cxcl11.1 (ENSCHAG00000012224)	ENSCHAG00000012277	ENSCHAG00000012312	cnot6l (ENSCHAG00000012356)	mrpl1 (ENSCHAG00000012472)	fras1 (ENSCHAG00000012524)	anxa3a (ENSCHAG00000013950)	lysmd3 (ENSCHAG00000014461) #15	ENSCHAG00000014470	mblac2 (ENSCHAG00000014481) #17	mef2cb (ENSCHAG00000014511) #19	tmem161b (ENSCHAG00000014729) #22	ccnh (ENSCHAG00000015179) #23	RASA1 (ENSCHAG00000015296) #25	cox7c (ENSCHAG00000017092) #26	EDIL3 (ENSCHAG00000017117)	ENSCHAG00000017275	ENSCHAG00000017305	ENSCHAG00000017328	ENSCHAG00000017352	zgc:110626 (ENSCHAG00000017380)	ENSCHAG00000017394	ENSCHAG00000017404	ENSCHAG00000017416	ENSCHAG00000017446	ssbp2a (ENSCHAG00000017487)	f2r (ENSCHAG00000017689)
Denticle herring	MODERN SPECIES	2	ENSDCDG00000023062	WDFY3 (ENSDCDG00000023070)	CDS1 (ENSDCDG00000023103)	tmem175 (ENSDCDG00000023365)	ENSDCDG00000023370	ENSDCDG00000023373	ENSDCDG00000023375	ENSDCDG00000023377	cnot6l (ENSDCDG00000023380)	mrpl1 (ENSDCDG00000023386)	ENSDCDG00000023388	fras1 (ENSDCDG00000023429)	lysmd3 (ENSDCDG00000024975) #15	mblac2 (ENSDCDG00000024978) #17	mef2cb (ENSDCDG00000024982) #19	tmem161b (ENSDCDG00000025039) #22	ccnh (ENSDCDG00000025105) #23	RASA1 (ENSDCDG00000025154) #25	cox7c (ENSDCDG00000026796) #26	EDIL3 (ENSDCDG00000026815)	HAPLN1 (ENSDCDG00000026996)	ENSDCDG00000026999	ENSDCDG00000027001	ENSDCDG00000027012	cxcl11.1 (ENSDCDG00000027014)	cxcl11.1 (ENSDCDG00000027033)	cxcl11.1 (ENSDCDG00000027047)	ENSDCDG00000027050	rufy3 (ENSDCDG00000027088)	GRSF1 (ENSDCDG00000028062)	mob1ba (ENSDCDG00000028072)
Otophysi	ANCESTRAL SPECIES	20	ENSGT00940000157699	ENSGT00940000160372	ENSGT00940000160516	ENSGT00940000158866	ENSGT00940000161769.b.b	ENSGT00940000159913.b	ENSGT00940000156031.f	ENSGT00940000160879	ENSGT00940000157876.c #11	ENSGT00940000155411.c #13	ENSGT00940000154880 #14	ENSGT00940000158711 #15	ENSGT01100000263701	ENSGT00390000017819 #17	ENSGT00940000157492.b #19	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #25	ENSGT00390000018086 #26	ENSGT00940000158144.a	ENSGT00940000166906	ENSGT00940000156102.q.a.b	ENSGT00940000156102.q.b	ENSGT00940000166014	ENSGT00940000164012.C	ENSGT00950000183049.E	ENSGT01050000244840.A.a.b.e	ENSGT01050000244840.A.b.b.a	ENSGT00950000183076.a.b.a	ENSGT00950000182940.b.b.e	ENSGT00940000164571
Characiphysae	ANCESTRAL SPECIES	36	ENSGT00940000160372	ENSGT00940000160516	ENSGT00940000158866	ENSGT00940000161769.b.b	ENSGT00940000159913.b	ENSGT00940000159913.a.b	ENSGT00940000156031.f	ENSGT00940000160879	ENSGT00940000157876.c #11	ENSGT00940000155411.c #13	ENSGT00940000154880 #14	ENSGT00940000158711 #15	ENSGT01100000263701	ENSGT00390000017819 #17	ENSGT00940000157492.b #19	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #25	ENSGT00390000018086 #26	ENSGT00940000158144.a	ENSGT00940000166906	ENSGT00940000156102.q.a.b	ENSGT00940000156102.q.b	ENSGT00940000166014	ENSGT00940000164012.C	ENSGT00950000183049.E	ENSGT01050000244840.A.a.b.e	ENSGT01050000244840.A.b.b.a	ENSGT00950000183076.a.b.a	ENSGT00950000182940.b.b.e	ENSGT00940000164571
Channel catfish	MODERN SPECIES	14	jak2b (ENSIPUG00000014352)	mboat4 (ENSIPUG00000014320)	gldc (ENSIPUG00000014183)	coq2 (ENSIPUG00000014294)	mfsd10 (ENSIPUG00000014155)	inpp5e (ENSIPUG00000014120)	pmpca (ENSIPUG00000014064)	ENSIPUG00000014034	ENSIPUG00000014009	arrdc3a (ENSIPUG00000013996) #13	adgrv1 (ENSIPUG00000013862) #14	lysmd3 (ENSIPUG00000013836) #15	polr3g (ENSIPUG00000013820)	MBLAC2 (ENSIPUG00000013810) #17	mef2c (ENSIPUG00000013747) #19	tmem161b (ENSIPUG00000013679) #22	ccnh (ENSIPUG00000013612) #23	rasa1 (ENSIPUG00000013511) #25	COX7C (ENSIPUG00000013488) #26	EDIL3 (ENSIPUG00000013455)	hapln1a (ENSIPUG00000013442)	vcan (ENSIPUG00000013420)	ENSIPUG00000013411	zgc:110626 (ENSIPUG00000013386)	ssbp2 (ENSIPUG00000013265)	f2r (ENSIPUG00000013239)	F2RL2 (ENSIPUG00000013232)	iqgap2 (ENSIPUG00000013096)	sv2c (ENSIPUG00000013042)	poc5 (ENSIPUG00000013008)	Ankdd1b (ENSIPUG00000012979)
Characiphysae_b	ANCESTRAL SPECIES	9	ENSGT00940000160372	ENSGT00940000160516	ENSGT00940000158866	ENSGT00940000161769.b.b	ENSGT00940000159913.b	ENSGT00940000159913.a.b	ENSGT00940000156031.f	ENSGT00940000160879	ENSGT00940000157876.c #11	ENSGT00940000155411.c #13	ENSGT00940000154880 #14	ENSGT00940000158711 #15	ENSGT01100000263701	ENSGT00390000017819 #17	ENSGT00940000157492.b #19	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #25	ENSGT00390000018086 #26	ENSGT00940000158144.a	ENSGT00940000166906	ENSGT00940000156102.q.a.b	ENSGT00940000156102.q.b	ENSGT00940000166014	ENSGT00940000164012.C	ENSGT00950000183049.E	ENSGT01050000244840.A.a.b.e	ENSGT01050000244840.A.b.b.a	ENSGT00950000183076.a.b.a	ENSGT00950000182940.b.b.e	ENSGT00940000164571
Characoidei	ANCESTRAL SPECIES	10	ENSGT00940000155640.a	ENSGT00940000164450.a	ENSGT01030000234564.a.a.b.b	ENSGT00390000017970	ENSGT00940000153771.B	ENSGT00830000128422	ENSGT00940000158199	ENSGT00940000156724	ENSGT00940000164012.A.a	ENSGT00940000155411.c #13	ENSGT00940000154880 #14	ENSGT00940000158711 #15	ENSGT01100000263701	ENSGT00390000017819 #17	ENSGT00940000157492.b #19	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #25	ENSGT00390000018086 #26	ENSGT00940000158144.a
Mexicana tetra	MODERN SPECIES	26	mboat4 (ENSAMXG00000014423)	gldc (ENSAMXG00000014431)	coq2 (ENSAMXG00000040737)	mfsd10 (ENSAMXG00000014462)	inpp5e (ENSAMXG00000014477)	pmpca (ENSAMXG00000014491)	ENSAMXG00000014505	ENSAMXG00000038885	arrdc3a (ENSAMXG00000011884) #13	adgrv1 (ENSAMXG00000037980) #14	ENSAMXG00000031651	lysmd3 (ENSAMXG00000033332) #15	polr3g (ENSAMXG00000014591)	mblac2 (ENSAMXG00000032070) #17	mef2cb (ENSAMXG00000040877) #19	tmem161b (ENSAMXG00000037421) #22	ccnh (ENSAMXG00000014644) #23	RASA1 (ENSAMXG00000014658) #25	cox7c (ENSAMXG00000032595) #26	ENSAMXG00000043082	ENSAMXG00000039110	EDIL3 (ENSAMXG00000035829)	HAPLN1 (ENSAMXG00000042653)	ENSAMXG00000031311	ENSAMXG00000031084	ENSAMXG00000031430	ssbp2a (ENSAMXG00000031820)	f2r (ENSAMXG00000039666)	iqgap2 (ENSAMXG00000013577)	F2RL2 (ENSAMXG00000040816)	sv2ca (ENSAMXG00000013674)
Red-bellied piranha	MODERN SPECIES	603														mef2aa (ENSPNAG00000025332)	mef2cb (ENSPNAG00000025203) #19	tmem161b (ENSPNAG00000025172) #22	ccnh (ENSPNAG00000025150) #23	RASA1 (ENSPNAG00000025095) #25
Electric eel	MODERN SPECIES	64	gldc (ENSEEEG00000022056)	coq2 (ENSEEEG00000022050)	mfsd10 (ENSEEEG00000022045)	inpp5e (ENSEEEG00000022042)	pmpca (ENSEEEG00000021976)	ENSEEEG00000021962	ENSEEEG00000021961	polr2g (ENSEEEG00000021957)	ENSEEEG00000021952	arrdc3a (ENSEEEG00000021951) #13	adgrv1 (ENSEEEG00000021948) #14	lysmd3 (ENSEEEG00000021945) #15	polr3g (ENSEEEG00000021943)	mblac2 (ENSEEEG00000021942) #17	mef2cb (ENSEEEG00000021933) #19	tmem161b (ENSEEEG00000021905) #22	ccnh (ENSEEEG00000021903) #23	RASA1 (ENSEEEG00000021475) #25	cox7c (ENSEEEG00000021458) #26
Cyprinoidei	ANCESTRAL SPECIES	43	ENSGT00390000004985.a	ENSGT00660000097118	ENSGT00940000156031.e	ENSGT00940000158953	ENSGT00610000086112	ENSGT00940000165983	ENSGT00530000063907.c #10	ENSGT00940000157876.d #11	ENSGT00940000164012.A	ENSGT00940000155411.c.m.a #13	ENSGT00940000154880 #14	ENSGT00940000158711 #15	ENSGT01100000263701	ENSGT00390000017819 #17	ENSGT00940000157492.b #19	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #25	ENSGT00390000018086 #26	ENSGT00940000158144.a	ENSGT00940000166906	ENSGT00940000156102.q.b	ENSGT00940000166014	ENSGT00940000164012.C	ENSGT00950000183049.E	ENSGT01050000244840.A.a.b.e	ENSGT00950000183076.a.b.a	ENSGT01050000244840.A.b.b.a	ENSGT00950000182940.b.b.e	ENSGT00940000164571	ENSGT00940000154170.A
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	53															ENSGT00940000157492.b.e.b #19	ENSGT00390000000672.a.b.u #22	ENSGT00390000008634.l #23	ENSGT00940000155846.h.a #25	ENSGT00390000018086.d #26	ENSGT00940000158144.a.f	ENSGT00940000166906.h	ENSGT00940000156102.q.a.b	ENSGT00940000156102.q.b.h	ENSGT00940000166014.h	ENSGT00940000164012.C.c	ENSGT00950000183049.E.t.b	ENSGT01050000244840.A.a.b.e.b	ENSGT01050000244840.A.b.b.a.a	ENSGT00950000183076.a.b.a.b	ENSGT00950000182940.b.b.e.a	ENSGT00940000164571.b
Cyprininae_a	ANCESTRAL SPECIES	531							ENSGT00530000063907.c.f #10	ENSGT00940000157876.d.b #11	ENSGT00940000164012.A.d	ENSGT00940000155411.c.m.a #13	ENSGT00940000154880 #14	ENSGT00940000158711.d #15	ENSGT01100000263701	ENSGT00390000017819.f #17	ENSGT00940000157492.b.e.b #19	ENSGT00390000000672.a.b.u #22	ENSGT00390000008634.l #23	ENSGT00940000155846.h.a #25	ENSGT00940000158144.a.e
Common carp reference	MODERN SPECIES	15	ENSCCRG00000054993	ENSCCRG00000019485	ENSCCRG00000063126	fam172a (ENSCCRG00000075922) #10	ENSCCRG00000070994	nr2f1a (ENSCCRG00000004148) #11	ENSCCRG00000074714	ENSCCRG00000079620	ENSCCRG00000082638	arrdc3a (ENSCCRG00000070181) #13	adgrv1 (ENSCCRG00000001765) #14	lysmd3 (ENSCCRG00000013677) #15	polr3g (ENSCCRG00000073638)	mblac2 (ENSCCRG00000013675) #17	mef2cb (ENSCCRG00000033625) #19	tmem161b (ENSCCRG00000032578) #22	ccnh (ENSCCRG00000032654) #23	RASA1 (ENSCCRG00000032728) #25	EDIL3 (ENSCCRG00000073037)	hapln1a (ENSCCRG00000051272)	ENSCCRG00000054071	ENSCCRG00000070726	ENSCCRG00000025959	ENSCCRG00000041408	ssbp2a (ENSCCRG00000019895)	f2r (ENSCCRG00000019984)	iqgap2 (ENSCCRG00000080285)	F2RL2 (ENSCCRG00000041422)	sv2ca (ENSCCRG00000041429)	ENSCCRG00000041503	POLK (ENSCCRG00000041529)
Golden-line barbel	MODERN SPECIES	601									ENSSGRG00000053490	ENSSGRG00000053492 #13	adgrv1 (ENSSGRG00000053495) #14	lysmd3 (ENSSGRG00000053502) #15	polr3g (ENSSGRG00000053503)	mblac2 (ENSSGRG00000053504) #17	MEF2C (ENSSGRG00000053506) #19	tmem161b (ENSSGRG00000053513) #22	ccnh (ENSSGRG00000053522) #23	RASA1 (ENSSGRG00000053524) #25
Goldfish	MODERN SPECIES	23	TRAF2 (ENSCARG00000022241)	ENSCARG00000022326	tncb (ENSCARG00000022468)	ENSCARG00000026738	ENSCARG00000026757	ENSCARG00000026799	nsmfb (ENSCARG00000026834)	ENSCARG00000027870	DNAH10 (ENSCARG00000027955)	vamp5 (ENSCARG00000029186)	vamp8 (ENSCARG00000029200)	ncaph (ENSCARG00000029242)	TACR1 (ENSCARG00000029379)	zgc:110329 (ENSCARG00000029405)	mef2cb (ENSCARG00000029454) #19	tmem161b (ENSCARG00000029726) #22	ccnh (ENSCARG00000030015) #23	RASA1 (ENSCARG00000030140) #25	cox7c (ENSCARG00000032025) #26	si:ch211-284e13.5 (ENSCARG00000032039)	ENSCARG00000032046	si:dkey-111e8.4 (ENSCARG00000052266)	ENSCARG00000052283	apoa1a (ENSCARG00000052309)	pafah1b2 (ENSCARG00000052325)	ENSCARG00000052354	mpzl2b (ENSCARG00000052364)	scn4bb (ENSCARG00000052379)	ENSCARG00000052494	tmprss13b (ENSCARG00000052504)	ENSCARG00000052537
Cyprininae	ANCESTRAL SPECIES		ENSGT00940000164012.A.c	ENSGT00940000155411.c.n.b #13	ENSGT00940000165983	ENSGT00530000063907.c.f #10	ENSGT00940000157876.d.b #11	ENSGT00940000164012.A.d	ENSGT00940000155411.c.m.a #13	ENSGT00940000154880 #14	ENSGT00940000158711.c #15	ENSGT00390000017819.e #17	ENSGT00940000157492.b.e.a #19	ENSGT00940000158711.d #15	ENSGT01100000263701	ENSGT00390000017819.f #17	ENSGT00940000157492.b.f #19	ENSGT00390000000672.a.b.v #22	ENSGT00390000008634.k #23	ENSGT00940000155846.h.b #25	ENSGT00390000018086.c #26	ENSGT00940000158144.a.e	ENSGT00940000166906.g	ENSGT00940000156102.q.b.g	ENSGT00940000166014.g	ENSGT00940000164012.C.d	ENSGT00950000183049.E.t.a	ENSGT01050000244840.A.a.b.e.a	ENSGT00950000183076.a.b.a.a	ENSGT01050000244840.A.b.b.a.b	ENSGT00950000182940.b.b.e.b	ENSGT00940000164571.a	ENSGT00940000156667.k
Goldfish	MODERN SPECIES	44	cert1a (ENSCARG00000040792)	ENSCARG00000040713	SKIC3 (ENSCARG00000040343)	FAM81B (ENSCARG00000040308)	ENSCARG00000040300	MCTP1 (ENSCARG00000038284)	ENSCARG00000038134	ENSCARG00000038124	fam172a (ENSCARG00000038096) #10	nr2f1a (ENSCARG00000037927) #11	ARRDC3 (ENSCARG00000037812) #13	ENSCARG00000037761 #14	lysmd3 (ENSCARG00000037733) #15	mblac2 (ENSCARG00000037689) #17	mef2cb (ENSCARG00000037336) #19	tmem161b (ENSCARG00000036839) #22	ccnh (ENSCARG00000036775) #23	RASA1 (ENSCARG00000036380) #25	cox7c (ENSCARG00000036332) #26	ENSCARG00000036330	NPFFR2 (ENSCARG00000036313)	adamts3 (ENSCARG00000032241)	ENSCARG00000032107	smarca2 (ENSCARG00000031497)	dmrt2a (ENSCARG00000031374)	dmrt3a (ENSCARG00000031347)	dmrt1 (ENSCARG00000031029)	ENSCARG00000030842	fbp1a (ENSCARG00000030809)	fbp2 (ENSCARG00000030776)	ctsla (ENSCARG00000030758)
Cyprininae_a	ANCESTRAL SPECIES		ENSGT00390000016407.a	ENSGT00660000097118	ENSGT00940000156031.e.c	ENSGT00940000158953.r	ENSGT00970000197390	ENSGT00940000156031.e.d	ENSGT00940000158953.q	ENSGT00610000086112	ENSGT00530000063907.c.e #10	ENSGT00940000157876.d.a #11	ENSGT00940000164012.A.c	ENSGT00940000155411.c.m.b #13	ENSGT00940000158711.c #15	ENSGT00390000017819.e #17	ENSGT00940000157492.b.e.a #19	ENSGT00390000000672.a.b.v #22	ENSGT00390000008634.k #23	ENSGT00940000155846.h.b #25	ENSGT00390000018086.c #26	ENSGT00940000166906.g	ENSGT00940000156102.q.b.g	ENSGT00940000166014.g	ENSGT00940000164012.C.d	ENSGT00950000183049.E.t.a	ENSGT01050000244840.A.a.b.e.a	ENSGT00950000183076.a.b.a.a	ENSGT01050000244840.A.b.b.a.b	ENSGT00950000182940.b.b.e.b	ENSGT00940000164571.a	ENSGT00940000156667.k	ENSGT00940000165457.b.a
Common carp reference	MODERN SPECIES	7	cert1a (ENSCCRG00000031135)	SKIC3 (ENSCCRG00000029790)	FAM81B (ENSCCRG00000041802)	ENSCCRG00000059248	MCTP1 (ENSCCRG00000034936)	ENSCCRG00000080496	ENSCCRG00000006208	KIAA0825 (ENSCCRG00000027807)	fam172a (ENSCCRG00000062954) #10	nr2f1a (ENSCCRG00000004169) #11	ENSCCRG00000042538	ARRDC3 (ENSCCRG00000054898) #13	lysmd3 (ENSCCRG00000029548) #15	mblac2 (ENSCCRG00000076340) #17	mef2cb (ENSCCRG00000066685) #19	tmem161b (ENSCCRG00000062471) #22	ccnh (ENSCCRG00000032476) #23	RASA1 (ENSCCRG00000032499) #25	ENSCCRG00000055250	COX7C (ENSCCRG00000030424) #26	EDIL3 (ENSCCRG00000025530)	hapln1a (ENSCCRG00000025988)	ENSCCRG00000025969	ENSCCRG00000025654	ENSCCRG00000067008	ssbp2a (ENSCCRG00000025930)	f2r (ENSCCRG00000025914)	iqgap2 (ENSCCRG00000080066)	F2RL2 (ENSCCRG00000025911)	sv2ca (ENSCCRG00000017476)	ENSCCRG00000044683
Golden-line barbel	MODERN SPECIES	485												lysmd3 (ENSSGRG00000029536) #15	polr3g (ENSSGRG00000029535)	ENSSGRG00000029533	mef2cb (ENSSGRG00000029532) #19	tmem161b (ENSSGRG00000029411) #22	ccnh (ENSSGRG00000029409) #23	RASA1 (ENSSGRG00000027926) #25	cox7c (ENSSGRG00000027898) #26
Zebrafish	MODERN SPECIES	20	ENSDARG00000035193	zgc:194908 (ENSDARG00000079697)	ENSDARG00000114659	MCTP1 (ENSDARG00000076404)	ENSDARG00000102118	ENSDARG00000077072	fam172a (ENSDARG00000052697) #10	nr2f1a (ENSDARG00000052695) #11	ENSDARG00000067664	arrdc3a (ENSDARG00000052690) #13	adgrv1 (ENSDARG00000021137) #14	lysmd3 (ENSDARG00000024693) #15	polr3g (ENSDARG00000024687)	mblac2 (ENSDARG00000059689) #17	mef2cb (ENSDARG00000009418) #19	tmem161b (ENSDARG00000055989) #22	ENSDARG00000067658	ccnh (ENSDARG00000007657) #23	RASA1 (ENSDARG00000035535) #25	cox7c (ENSDARG00000104537) #26	EDIL3 (ENSDARG00000093413)	hapln1a (ENSDARG00000089769)	ENSDARG00000103515	ENSDARG00000098013	si:ch211-130m23.2 (ENSDARG00000095136)	zgc:110626 (ENSDARG00000053159)	ssbp2a (ENSDARG00000057395)	f2r (ENSDARG00000060012)	F2RL2 (ENSDARG00000090524)	iqgap2 (ENSDARG00000060010)	sv2ca (ENSDARG00000059997)
Euteleosteomorpha	ANCESTRAL SPECIES	32															ENSGT00940000157492.b #19	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #25	ENSGT00390000018086 #26	ENSGT00940000158144.a	ENSGT00940000166906	ENSGT00940000156102.q.a.b	ENSGT00940000156102.q.b	ENSGT00940000166544.b	ENSGT00940000156102.q.a.a	ENSGT00940000155186	ENSGT00940000166014	ENSGT00940000165930.A	ENSGT00940000165930.B	ENSGT00940000164012.C	ENSGT00950000183049.E
Protacanthopterygii	ANCESTRAL SPECIES	26	ENSGT00940000158049	ENSGT00940000156235.c.b	ENSGT00390000012207.a.a.d	ENSGT00390000012207.a.a.c	ENSGT00940000153601.a.a.e.a	ENSGT00940000160987	ENSGT00940000155853.d.b	ENSGT00950000183180.a.a	ENSGT00940000161076	ENSGT00940000155976.b.a.a	ENSGT00940000159976	ENSGT00940000170611	ENSGT00950000183047.d.f	ENSGT00940000154745.a	ENSGT00940000157492.b #19	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #25	ENSGT00390000018086 #26	ENSGT00940000158144.a	ENSGT00940000159267	ENSGT00940000156102.r	ENSGT00940000166544.a	ENSGT00390000000924	ENSGT00940000160328	ENSGT00950000183041.C	ENSGT00940000161915.b	ENSGT00940000155657	ENSGT00940000155864.b.c.a	ENSGT00410000025802	ENSGT00940000154704.c.c
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	1518															ENSGT00940000157492.b.j #19	ENSGT00390000000672.a.b.w #22
Salmoninae_a	ANCESTRAL SPECIES	70	ENSGT00940000160570.d	ENSGT00940000158049	ENSGT00940000156235.c.b.c	ENSGT00390000012207.a.a.c	ENSGT00940000153601.a.a.e.a.b	ENSGT00940000155853.d.b.d	ENSGT00950000183180.a.a.o	ENSGT00940000155976.b.a.a.f	ENSGT00950000183047.d.f.a	ENSGT01000000218408	ENSGT00940000156959.A.l.a	ENSGT01040000240838.a	ENSGT01040000240838.b.a	ENSGT00670000098480.z	ENSGT00940000157492.b.j #19	ENSGT00390000000672.a.b.w #22	ENSGT00390000008634.o #23	ENSGT00940000155846.a #25	ENSGT00390000018086.a #26	ENSGT00940000158144.a.a	ENSGT00940000166906.e	ENSGT00940000156102.q.b.d	ENSGT00950000183007.b.f.g	ENSGT01040000240838.b.b	ENSGT00390000004985.a	ENSGT00940000156031.e.g	ENSGT00940000158953	ENSGT00610000086112
Salmo	ANCESTRAL SPECIES	58	ENSGT00940000160570.d	ENSGT00940000158049	ENSGT00940000156235.c.b.c	ENSGT00390000012207.a.b.b	ENSGT00390000012207.a.a.c	ENSGT00940000153601.a.a.e.a.b	ENSGT00940000155853.d.b.d	ENSGT00950000183180.a.a.o	ENSGT00940000155976.b.a.a.f	ENSGT00950000183047.d.f.a	ENSGT00940000156959.A.l.a	ENSGT01040000240838.a	ENSGT01040000240838.b.a	ENSGT00670000098480.z	ENSGT00940000157492.b.j #19	ENSGT00390000000672.a.b.w #22	ENSGT00390000008634.o #23	ENSGT00940000155846.a #25	ENSGT00390000018086.a #26	ENSGT00940000158144.a.a	ENSGT00940000166906.e	ENSGT00940000156102.q.b.d	ENSGT00950000183007.b.f.g.a	ENSGT00390000004985.a	ENSGT00990000211620	ENSGT00940000156031.e.g	ENSGT00940000158953	ENSGT00610000086112	ENSGT00530000063907.c.h #10	ENSGT00940000157876.f #11	ENSGT00940000157242.a.a.b
Atlantic salmon	MODERN SPECIES	12	snapc4 (ENSSSAG00000064398)	card9 (ENSSSAG00000064391)	ENSSSAG00000105088	pomt1 (ENSSSAG00000064314)	RAPGEF1 (ENSSSAG00000060409)	med27 (ENSSSAG00000059995)	ntng2 (ENSSSAG00000059962)	ENSSSAG00000049134	phf19 (ENSSSAG00000048760)	fibcd1 (ENSSSAG00000048747)	ENSSSAG00000039962	NOE1 (ENSSSAG00000039458)	ENSSSAG00000100298	ENSSSAG00000039404	mef2cb (ENSSSAG00000032249) #19	tmem161b (ENSSSAG00000103342) #22	ccnh (ENSSSAG00000031250) #23	RASA1 (ENSSSAG00000009918) #25	ENSSSAG00000115116	EDIL3 (ENSSSAG00000009561)	ENSSSAG00000092916	hapln1a (ENSSSAG00000009509)	ENSSSAG00000121084	ENSSSAG00000095308	ENSSSAG00000009292	ENSSSAG00000009251	ENSSSAG00000090195	fam81b (ENSSSAG00000009202)	ENSSSAG00000009183	MCTP1 (ENSSSAG00000008495)	SLF1 (ENSSSAG00000008460)
River trout	MODERN SPECIES	39	pomt1 (ENSSTUG00000011597)	ENSSTUG00000011592	RAPGEF1 (ENSSTUG00000010091)	med27 (ENSSTUG00000010023)	NTNG2 (ENSSTUG00000010017)	DAB2IP (ENSSTUG00000007627)	phf19 (ENSSTUG00000007470)	FIBCD1 (ENSSTUG00000007456)	fnbp1a (ENSSTUG00000007174)	olfm1a (ENSSTUG00000007118)	ENSSTUG00000007109	ENSSTUG00000007103	ENSSTUG00000007088	mef2cb (ENSSTUG00000006634) #19	ENSSTUG00000006612	tmem161b (ENSSTUG00000006267) #22	ccnh (ENSSTUG00000006226) #23	RASA1 (ENSSTUG00000005102) #25	cox7c (ENSSTUG00000005033) #26	ENSSTUG00000005027	ENSSTUG00000005009	EDIL3 (ENSSTUG00000004155)	ENSSTUG00000004108	hapln1a (ENSSTUG00000004092)	ENSSTUG00000004076	ENSSTUG00000004059	irgf1 (ENSSTUG00000004015)	ENSSTUG00000004003	FAM81B (ENSSTUG00000003976)	ENSSTUG00000003958	MCTP1 (ENSSTUG00000002819)
Oncorhynchus	ANCESTRAL SPECIES	12	ENSGT00940000160570.d	ENSGT00940000158049	ENSGT00940000156235.c.b.c	ENSGT00390000012207.a.a.c	ENSGT00940000153601.a.a.e.a.b	ENSGT00940000155853.d.b.d	ENSGT00950000183180.a.a.o	ENSGT00940000155976.b.a.a.f	ENSGT00950000183047.d.f.a	ENSGT01000000218408	ENSGT00940000156959.A.l.a	ENSGT01100000265546	ENSGT01040000240838.b.a	ENSGT00670000098480.z	ENSGT00940000157492.b.j #19	ENSGT00390000000672.a.b.w #22	ENSGT00390000008634.o #23	ENSGT00940000155846.a #25	ENSGT00390000018086.a #26	ENSGT00940000158144.a.a	ENSGT00940000166906.e	ENSGT00940000156102.q.b.d	ENSGT00950000183007.b.f.g	ENSGT01040000240838.b.b	ENSGT00390000004985.a	ENSGT00660000097118	ENSGT00940000156031.e.g	ENSGT00940000158953	ENSGT00610000086112
Oncorhynchus_a	ANCESTRAL SPECIES	15	ENSGT00390000000560.b.b.b	ENSGT00940000160404.a	ENSGT00940000160570.d	ENSGT00940000158049	ENSGT00940000156235.c.b.c	ENSGT00390000012207.a.a.c	ENSGT00940000153601.a.a.e.a.b	ENSGT00940000155853.d.b.d	ENSGT00950000183180.a.a.o	ENSGT00940000155976.b.a.a.f	ENSGT00950000183047.d.f.a	ENSGT01000000218408	ENSGT00940000156959.A.l.a	ENSGT01100000265546	ENSGT00940000157492.b.j #19	ENSGT00390000000672.a.b.w #22	ENSGT00390000008634.o #23	ENSGT00940000155846.a #25	ENSGT00390000018086.a #26	ENSGT00940000158144.a.a	ENSGT00940000166906.e	ENSGT00940000156102.q.b.d	ENSGT00950000183007.b.f.g	ENSGT01040000240838.b.b	ENSGT00390000004985.a	ENSGT00660000097118	ENSGT00940000156031.e.g	ENSGT00940000158953	ENSGT00610000086112
Coho salmon	MODERN SPECIES	28	snapc4 (ENSOKIG00005048050)	CARD9 (ENSOKIG00005048060)	pomt1 (ENSOKIG00005048076)	RAPGEF1 (ENSOKIG00005048173)	med27 (ENSOKIG00005048351)	NTNG2 (ENSOKIG00005048372)	DAB2IP (ENSOKIG00005048502)	phf19 (ENSOKIG00005049378)	FIBCD1 (ENSOKIG00005049426)	fnbp1a (ENSOKIG00005049465)	ENSOKIG00005049596	olfm1a (ENSOKIG00005031027)	ENSOKIG00005031113	ENSOKIG00005031135	mef2cb (ENSOKIG00005031185) #19	tmem161b (ENSOKIG00005031517) #22	ccnh (ENSOKIG00005031684) #23	RASA1 (ENSOKIG00005031754) #25	cox7c (ENSOKIG00005031987) #26	EDIL3 (ENSOKIG00005032037)	ENSOKIG00005032330	hapln1a (ENSOKIG00005032336)	ENSOKIG00005032357	ENSOKIG00005032475	IRGC (ENSOKIG00005032485)	ENSOKIG00005032500	FAM81B (ENSOKIG00005032506)	MCTP1 (ENSOKIG00005032549)	ENSOKIG00005033055	SLF1 (ENSOKIG00005033059)	KIAA0825 (ENSOKIG00005033067)
Chinook salmon	MODERN SPECIES	3	ENSOTSG00005047105	ENSOTSG00005047106	ptn (ENSOTSG00005047108)	mtpn (ENSOTSG00005047109)	ENSOTSG00005047110	SEMA3C (ENSOTSG00005047119)	cd36 (ENSOTSG00005047121)	ENSOTSG00005047129	phf19 (ENSOTSG00005047133)	FIBCD1 (ENSOTSG00005047136)	fnbp1a (ENSOTSG00005047142)	ENSOTSG00005047163	olfm1a (ENSOTSG00005047164)	ENSOTSG00005033015	mef2cb (ENSOTSG00005033029) #19	tmem161b (ENSOTSG00005035253) #22	ccnh (ENSOTSG00005035254) #23	RASA1 (ENSOTSG00005035259) #25	cox7c (ENSOTSG00005035400) #26	EDIL3 (ENSOTSG00005035431)	hapln1a (ENSOTSG00005036651)	ENSOTSG00005036652	ENSOTSG00005036654	ENSOTSG00005036656	FAM81B (ENSOTSG00005036657)	zgc:194908 (ENSOTSG00005036659)	SLF1 (ENSOTSG00005036661)	KIAA0825 (ENSOTSG00005036662)	ENSOTSG00005036663 #10	fam172a (ENSOTSG00005036666) #10	nr2f1a (ENSOTSG00005036667) #11
Rainbow trout	MODERN SPECIES	2	RAPGEF1 (ENSOMYG00000011220)	ENSOMYG00000075481	med27 (ENSOMYG00000011108)	ENSOMYG00000011063	ENSOMYG00000010562	phf19 (ENSOMYG00000010103)	ENSOMYG00000009980	ENSOMYG00000009842	ENSOMYG00000071256	ENSOMYG00000009660	ENSOMYG00000009617	ENSOMYG00000073008	ENSOMYG00000055540	ENSOMYG00000009586	mef2cb (ENSOMYG00000009387) #19	tmem161b (ENSOMYG00000009002) #22	ccnh (ENSOMYG00000008859) #23	RASA1 (ENSOMYG00000008497) #25	ENSOMYG00000017501	COX7C (ENSOMYG00000007745) #26	EDIL3 (ENSOMYG00000007683)	ENSOMYG00000007455	ENSOMYG00000007399	ENSOMYG00000071820	ENSOMYG00000063779	ENSOMYG00000007122	ENSOMYG00000007054	ENSOMYG00000072659	FAM81B (ENSOMYG00000007040)	ENSOMYG00000067786	ENSOMYG00000049638
Huchen	MODERN SPECIES	1680															mef2cb (ENSHHUG00000051334) #19	tmem161b (ENSHHUG00000051484) #22
Salmoninae	ANCESTRAL SPECIES	253															ENSGT00940000157492.b.i #19	ENSGT00390000000672.a.b.x #22	ENSGT00390000008634.p #23	ENSGT00940000155846.b #25	ENSGT00390000018086.b #26	ENSGT00940000158144.a.b	ENSGT00940000166906.f	ENSGT00940000156102.q.a.b	ENSGT00940000156102.q.b.c	ENSGT00940000166544.b	ENSGT00940000155186.j	ENSGT00940000166014	ENSGT00940000165930.A	ENSGT00940000165930.B	ENSGT00940000164012.C	ENSGT00390000016407	ENSGT00940000163496.b.a
Salmoninae_a	ANCESTRAL SPECIES	10	ENSGT00940000156235.c.b.d	ENSGT00390000012207.a.a.d	ENSGT00940000153601.a.a.e.a.a	ENSGT00940000160987	ENSGT00940000155853.d.b.c	ENSGT00950000183180.a.a.p	ENSGT00940000161076	ENSGT00940000155976.b.a.a.e	ENSGT00940000159976	ENSGT00940000170611	ENSGT00950000183047.d.f.b	ENSGT00940000154745.a	ENSGT00940000156959.A.l.b	ENSGT00940000159789.t	ENSGT00940000157492.b.i #19	ENSGT00390000000672.a.b.x #22	ENSGT00390000008634.p #23	ENSGT00940000155846.b #25	ENSGT00390000018086.b #26	ENSGT00940000158144.a.b	ENSGT00940000166906.f	ENSGT00940000156102.q.a.b	ENSGT00940000156102.q.b.c	ENSGT00940000166544.b	ENSGT00940000155186.j	ENSGT00940000166014	ENSGT00940000165930.A	ENSGT00940000165930.B	ENSGT00940000164012.C	ENSGT00390000016407	ENSGT00940000163496.b.a
Salmo	ANCESTRAL SPECIES		ENSGT00940000156235.c.b.d	ENSGT00390000012207.a.b.a	ENSGT00940000153601.a.a.e.a.a	ENSGT00940000160987	ENSGT00940000155853.d.b.c	ENSGT00950000183180.a.a.p	ENSGT00940000161076	ENSGT00940000155976.b.a.a.e	ENSGT00940000159976	ENSGT00940000170611	ENSGT00950000183047.d.f.b	ENSGT00940000154745.a	ENSGT00940000156959.A.l.b	ENSGT00940000159789.t	ENSGT00940000157492.b.i #19	ENSGT00390000000672.a.b.x #22	ENSGT00390000008634.p #23	ENSGT00940000155846.b #25	ENSGT00390000018086.b #26	ENSGT00940000158144.a.b	ENSGT00940000166906.f	ENSGT00940000156102.q.a.b	ENSGT00940000156102.q.b.c	ENSGT00940000166544.b	ENSGT00940000155186.j	ENSGT00940000165930.A	ENSGT00940000165930.B	ENSGT00940000164012.C	ENSGT00390000016407	ENSGT00940000163496.b.a	ENSGT00660000097118
River trout	MODERN SPECIES	19	MED27 (ENSSTUG00000031932)	NTNG2 (ENSSTUG00000031969)	endog (ENSSTUG00000031984)	DAB2IP (ENSSTUG00000032108)	ENSSTUG00000035535	phf19 (ENSSTUG00000035545)	traf1 (ENSSTUG00000035612)	FIBCD1 (ENSSTUG00000035619)	SLC2A6 (ENSSTUG00000035628)	ENSSTUG00000035642	fnbp1a (ENSSTUG00000035702)	si:ch211-248e11.2 (ENSSTUG00000036131)	olfm1a (ENSSTUG00000036142)	ENSSTUG00000036175	mef2cb (ENSSTUG00000036286) #19	tmem161b (ENSSTUG00000036506) #22	ENSSTUG00000036590	ccnh (ENSSTUG00000036596) #23	RASA1 (ENSSTUG00000036727) #25	cox7c (ENSSTUG00000040824) #26	EDIL3 (ENSSTUG00000040836)	HAPLN1 (ENSSTUG00000040931)	ENSSTUG00000040941	ENSSTUG00000041014	ENSSTUG00000041051	TMEM167A (ENSSTUG00000041062)	ENSSTUG00000041094	ENSSTUG00000041138	zgc:110626 (ENSSTUG00000041162)	SKIC3 (ENSSTUG00000041193)	gig2p (ENSSTUG00000041462)
Atlantic salmon	MODERN SPECIES	16	NTNG2 (ENSSSAG00000054583)	ENSSSAG00000059773	endog (ENSSSAG00000054606)	ENSSSAG00000054750	phf19 (ENSSSAG00000065521)	traf1 (ENSSSAG00000065546)	ENSSSAG00000091162	ENSSSAG00000092470	ENSSSAG00000065605	ENSSSAG00000065674	ENSSSAG00000065708	cssa24h9orf116 (ENSSSAG00000066519)	olfm1 (ENSSSAG00000066530)	rxra (ENSSSAG00000066548)	mef2cb (ENSSSAG00000066626) #19	tmem161b (ENSSSAG00000107181) #22	ccnh (ENSSSAG00000121523) #23	RASA1 (ENSSSAG00000068355) #25	COX7C (ENSSSAG00000072903) #26	EDIL3 (ENSSSAG00000072918)	ENSSSAG00000093421	ENSSSAG00000072968	ENSSSAG00000072995	TMEM167A (ENSSSAG00000106471)	ENSSSAG00000084920	ENSSSAG00000096838	ENSSSAG00000073082	ENSSSAG00000074688	zgc:194908 (ENSSSAG00000106005)	ENSSSAG00000074711	ENSSSAG00000089739
Oncorhynchus	ANCESTRAL SPECIES	58	ENSGT00800000124190.j	ENSGT00390000000560.b.a	ENSGT00940000160404.b	ENSGT00940000160570.c	ENSGT00940000153246.b	ENSGT00390000012207.a.a.d	ENSGT00940000153601.a.a.e.a.a	ENSGT00940000160987	ENSGT00940000155853.d.b.c	ENSGT00950000183180.a.a.p	ENSGT00940000161076	ENSGT00940000155976.b.a.a.e	ENSGT00940000159976	ENSGT00390000018038	ENSGT00940000157492.b.i #19	ENSGT00390000000672.a.b.x #22	ENSGT00390000008634.p #23	ENSGT00940000155846.b #25	ENSGT00390000018086.b #26	ENSGT00940000158144.a.b	ENSGT00940000156102.q.b.c	ENSGT00940000166544.b	ENSGT00940000155186.j	ENSGT00940000166014	ENSGT00940000165930.A	ENSGT00940000165930.B	ENSGT00940000164012.C	ENSGT00390000016407	ENSGT00940000163496.b.a	ENSGT01060000248830.a.a.a.a.a.a	ENSGT00940000156031.e.h
Oncorhynchus_a	ANCESTRAL SPECIES	61	ENSGT00940000160404.b	ENSGT00940000160570.c	ENSGT00940000153246.b	ENSGT00940000163095	ENSGT00940000156235.c.b.d	ENSGT00390000012207.a.a.d	ENSGT00940000153601.a.a.e.a.a	ENSGT00940000160987	ENSGT00940000155853.d.b.c	ENSGT00950000183180.a.a.p	ENSGT00940000161076	ENSGT00940000155976.b.a.a.e	ENSGT00940000159976	ENSGT00390000018038	ENSGT00940000157492.b.i #19	ENSGT00390000000672.a.b.x #22	ENSGT00390000008634.p #23	ENSGT00940000155846.b #25	ENSGT00390000018086.b #26	ENSGT00940000158144.a.b	ENSGT00940000156102.q.b.c	ENSGT00940000166544.b	ENSGT00940000155186.j	ENSGT00940000165930.A	ENSGT00940000165930.B	ENSGT00940000164012.C	ENSGT00390000016407	ENSGT00940000163496.b.a	ENSGT01060000248830.a.a.a.a.a.a	ENSGT00940000156031.e.h	ENSGT00530000063907.c.g.a.b #10
Coho salmon	MODERN SPECIES	22	med27 (ENSOKIG00005004355)	NTNG2 (ENSOKIG00005004320)	endog (ENSOKIG00005004308)	DAB2IP (ENSOKIG00005002742)	phf19 (ENSOKIG00005002467)	traf1 (ENSOKIG00005002449)	FIBCD1 (ENSOKIG00005002441)	SLC2A6 (ENSOKIG00005002423)	ENSOKIG00005002390	FNBP1 (ENSOKIG00005002121)	si:ch211-248e11.2 (ENSOKIG00005001999)	ENSOKIG00005001961	ENSOKIG00005001820	ENSOKIG00005001790	mef2cb (ENSOKIG00005001781) #19	tmem161b (ENSOKIG00005001756) #22	ccnh (ENSOKIG00005001741) #23	RASA1 (ENSOKIG00005001658) #25	ENSOKIG00005001608	COX7C (ENSOKIG00005001602) #26	ENSOKIG00005001598	EDIL3 (ENSOKIG00005001579)	HAPLN1 (ENSOKIG00005001572)	ENSOKIG00005001562	ENSOKIG00005001561	ENSOKIG00005001556	TMEM167A (ENSOKIG00005001553)	ENSOKIG00005001549	ENSOKIG00005001546	ENSOKIG00005001543	SKIC3 (ENSOKIG00005001473)
Chinook salmon	MODERN SPECIES	28	si:ch211-248e11.2 (ENSOTSG00005027376)	olfm1a (ENSOTSG00005016450)	ENSOTSG00005016449	ENSOTSG00005016448	ENSOTSG00005016446 #14	arrdc3a (ENSOTSG00005016445) #13	gkap1 (ENSOTSG00005016439)	UBQLN1 (ENSOTSG00005016436)	IDNK (ENSOTSG00005016434)	FRMD3 (ENSOTSG00005016430)	RASEF (ENSOTSG00005016424)	ENSOTSG00005015165	mapkapk5 (ENSOTSG00005015054)	atxn2 (ENSOTSG00005015052)	mef2cb (ENSOTSG00005015048) #19	tmem161b (ENSOTSG00005015029) #22	ccnh (ENSOTSG00005015023) #23	RASA1 (ENSOTSG00005010628) #25	cox7c (ENSOTSG00005010611) #26	EDIL3 (ENSOTSG00005010610)	HAPLN1 (ENSOTSG00005010609)	ENSOTSG00005010608	xrcc4 (ENSOTSG00005010606)	TMEM167A (ENSOTSG00005010604)	ENSOTSG00005010603	ENSOTSG00005010602	ENSOTSG00005010601	SKIC3 (ENSOTSG00005010594)	gig2p (ENSOTSG00005010592)	MCTP1 (ENSOTSG00005010590)	ENSOTSG00005010589
Rainbow trout	MODERN SPECIES	27	endog (ENSOMYG00000002023)	ENSOMYG00000064892	ENSOMYG00000001900	ENSOMYG00000001345	phf19 (ENSOMYG00000001306)	ENSOMYG00000070167	traf1 (ENSOMYG00000001227)	ENSOMYG00000042070	ENSOMYG00000042045	ENSOMYG00000041837	ENSOMYG00000041799	ENSOMYG00000041784	ENSOMYG00000041403	ENSOMYG00000020726	mef2cb (ENSOMYG00000041252) #19	tmem161b (ENSOMYG00000041228) #22	ccnh (ENSOMYG00000041216) #23	RASA1 (ENSOMYG00000037530) #25	COX7C (ENSOMYG00000068821) #26	EDIL3 (ENSOMYG00000037063)	HAPLN1 (ENSOMYG00000036994)	ENSOMYG00000036961	ENSOMYG00000036933	TMEM167A (ENSOMYG00000036913)	ENSOMYG00000036899	ENSOMYG00000036883	ENSOMYG00000059198	ENSOMYG00000036849	ENSOMYG00000060754	ENSOMYG00000036792	ENSOMYG00000036699
Huchen	MODERN SPECIES	34	scrn3 (ENSHHUG00000010683)	GPR155 (ENSHHUG00000010542)	CHRNA1 (ENSHHUG00000010441)	ENSHHUG00000010426	rabl3 (ENSHHUG00000010401)	gtf2e1 (ENSHHUG00000010389)	ENSHHUG00000010379	stxbp5l (ENSHHUG00000009987)	poglut2 (ENSHHUG00000009887)	nepro (ENSHHUG00000009931)	slc10a2 (ENSHHUG00000009859)	gtpbp8 (ENSHHUG00000009854)	olfm1a (ENSHHUG00000009845)	ENSHHUG00000009734	mef2cb (ENSHHUG00000009562) #19	tmem161b (ENSHHUG00000009522) #22	RASA1 (ENSHHUG00000009231) #25
Northern pike	MODERN SPECIES	12	pomt1 (ENSELUG00000015628)	RAPGEF1 (ENSELUG00000015851)	med27 (ENSELUG00000015924)	NTNG2 (ENSELUG00000015948)	endog (ENSELUG00000015964)	DAB2IP (ENSELUG00000016051)	phf19 (ENSELUG00000000604)	traf1 (ENSELUG00000016128)	FIBCD1 (ENSELUG00000016156)	SLC2A6 (ENSELUG00000016201)	fnbp1a (ENSELUG00000016272)	lg13h9orf116 (ENSELUG00000028330)	olfm1a (ENSELUG00000016325)	ENSELUG00000016364	mef2cb (ENSELUG00000016439) #19	tmem161b (ENSELUG00000016532) #22	ccnh (ENSELUG00000016575) #23	RASA1 (ENSELUG00000016793) #25	cox7c (ENSELUG00000016842) #26	EDIL3 (ENSELUG00000016915)	HAPLN1 (ENSELUG00000016967)	ENSELUG00000017037	ENSELUG00000017082	TMEM167A (ENSELUG00000017116)	ENSELUG00000017125	ENSELUG00000017136	ENSELUG00000000647	zgc:110626 (ENSELUG00000017159)	ENSELUG00000031559	SKIC3 (ENSELUG00000000666)	gig2p (ENSELUG00000017477)
Acanthomorphata	ANCESTRAL SPECIES	29	ENSGT00940000165983	ENSGT00530000063907.c #10	ENSGT00940000157876 #11	ENSGT00940000174528	ENSGT00940000164012.A	ENSGT00530000067979	ENSGT00940000157242.a.a	ENSGT01030000240301	ENSGT00390000018619	ENSGT00940000166272	ENSGT00940000167385	ENSGT00940000164944	ENSGT00940000166263	ENSGT00940000157995 #18	ENSGT00940000157492.b #19	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #25	ENSGT00390000018086 #26	ENSGT00940000158144.a	ENSGT00940000166906	ENSGT00940000156102.q.a.b	ENSGT00940000156102.q.b	ENSGT00940000156102.q.a.a	ENSGT00940000166544.b	ENSGT00940000155186	ENSGT00940000166014	ENSGT00940000165930.A	ENSGT00940000165930.B	ENSGT00940000164012.C.i.b	ENSGT00940000164012.B
Euacanthomorphacea	ANCESTRAL SPECIES	14	ENSGT00530000063907.c #10	ENSGT00940000157876 #11	ENSGT00940000174528	ENSGT00940000164012.A.i	ENSGT00940000164012.A.j	ENSGT00530000067979	ENSGT00940000157242.a.a	ENSGT00390000018319.a.b.b.a	ENSGT00390000018619	ENSGT00940000167385	ENSGT00940000166272	ENSGT00940000164944	ENSGT00940000166263	ENSGT00940000157995 #18	ENSGT00940000157492.b #19	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #25	ENSGT00390000018086 #26	ENSGT00940000158144.a	ENSGT00940000166906	ENSGT00940000156102.q.a.b	ENSGT00940000156102.q.a.a	ENSGT00940000166544.b	ENSGT00940000155186	ENSGT00940000165930.A	ENSGT00940000165930.B	ENSGT00940000164012.C.i.b	ENSGT00940000164012.B	ENSGT00950000183049.E	ENSGT00510000050125.b.b
Percomorphaceae	ANCESTRAL SPECIES	2	ENSGT00610000086112	ENSGT00530000063907.c #10	ENSGT00940000157876 #11	ENSGT00940000174528	ENSGT00940000164012.A.i	ENSGT00940000164012.A.j	ENSGT00530000067979	ENSGT00940000157242.a.a	ENSGT00390000018319.a.b.b.a	ENSGT00390000018619	ENSGT00940000167385	ENSGT00940000166272	ENSGT00940000164944	ENSGT00940000166263	ENSGT00940000157492.b #19	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #25	ENSGT00390000018086 #26	ENSGT00940000158144.a	ENSGT00940000166906	ENSGT00940000156102.q.a.a	ENSGT00940000166544.b	ENSGT00940000155186	ENSGT00940000165930.A	ENSGT00940000165930.B	ENSGT00940000164012.C.i.a	ENSGT00940000164012.C.i.b	ENSGT00940000164012.B	ENSGT00950000183049.E	ENSGT00510000050125.b.a.b
Tiger tail seahorse	MODERN SPECIES	442	fam172a (ENSHCOG00000019507) #10	nr2f1a (ENSHCOG00000019523) #11	ENSHCOG00000019550	ENSHCOG00000019570	ENSHCOG00000019588	ENSHCOG00000019598	aqp3a (ENSHCOG00000019908)	AQP3 (ENSHCOG00000019944)	CARTPT (ENSHCOG00000019958)	nol6 (ENSHCOG00000020017)	ENSHCOG00000020034	wdr54 (ENSHCOG00000020040)	rhobtb4 (ENSHCOG00000020094)	ENSHCOG00000020133	mef2cb (ENSHCOG00000020194) #19	tmem161b (ENSHCOG00000020215) #22
Percomorphaceae_B	ANCESTRAL SPECIES	7	ENSGT00530000063907.c #10	ENSGT00940000157876 #11	ENSGT00940000174528	ENSGT00940000164012.A.i	ENSGT00940000164012.A.j	ENSGT00530000067979	ENSGT00940000157242.a.a	ENSGT00390000018319.a.b.b.a	ENSGT00940000158431.a.a.a.a.b.b.b	ENSGT00390000018619	ENSGT00940000166272	ENSGT00940000167385	ENSGT00940000164944	ENSGT00940000166263	ENSGT00940000157492.b #19	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #25	ENSGT00390000018086 #26	ENSGT00940000158144.a	ENSGT00940000166906	ENSGT00940000156102.q.a.b	ENSGT00940000156102.q.a.a	ENSGT00940000166544.b	ENSGT00940000155186	ENSGT00940000165930.B	ENSGT01100000264020	ENSGT00940000164012.C.i.a	ENSGT00940000164012.C.i.b	ENSGT00940000164012.B	ENSGT00950000183049.E
Percomorphaceae_C	ANCESTRAL SPECIES	7	ENSGT00530000063907.c #10	ENSGT00940000157876 #11	ENSGT00940000174528	ENSGT00940000164012.A.i	ENSGT00940000164012.A.j	ENSGT00530000067979	ENSGT00940000157242.a.a	ENSGT00390000018319.a.b.b.a	ENSGT00940000158431.a.a.a.a.b.b.b	ENSGT00390000018619	ENSGT00940000166272	ENSGT00940000167385	ENSGT00940000164944	ENSGT00940000166263	ENSGT00940000157492.b #19	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #25	ENSGT00390000018086 #26	ENSGT00940000158144.a	ENSGT00940000166906	ENSGT00940000156102.q.a.b	ENSGT00940000156102.q.a.a	ENSGT00940000166544.b	ENSGT00940000155186	ENSGT00940000166014	ENSGT00940000165930.A	ENSGT00940000164012.C.i.a	ENSGT00940000165930.B	ENSGT00940000164012.C.i.b	ENSGT00940000164012.B
Percomorphaceae_D	ANCESTRAL SPECIES	7	ENSGT00530000063907.c #10	ENSGT00940000157876 #11	ENSGT00940000174528	ENSGT00940000164012.A.i	ENSGT00940000164012.A.j	ENSGT00530000067979	ENSGT00940000157242.a.a	ENSGT00390000018319.a.b.b.a	ENSGT00940000158431.a.a.a.a.b.b.b	ENSGT00390000018619	ENSGT00940000166272	ENSGT00940000167385	ENSGT00940000164944	ENSGT00940000166263	ENSGT00940000157492.b #19	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #25	ENSGT00390000018086 #26	ENSGT00940000158144.a	ENSGT00940000166906	ENSGT00940000156102.q.a.b	ENSGT00940000156102.q.a.a	ENSGT00940000166544.b	ENSGT00940000155186	ENSGT00940000166014	ENSGT00940000165930.A	ENSGT00940000164012.C.i.a	ENSGT00940000165930.B	ENSGT00940000164012.C.i.b	ENSGT00940000164012.B
Carangaria	ANCESTRAL SPECIES	9	ENSGT00530000063907.c #10	ENSGT00940000157876 #11	ENSGT00940000174528	ENSGT00940000164012.A.i	ENSGT00940000164012.A.j	ENSGT00530000067979	ENSGT00940000157242.a.a	ENSGT00390000018319.a.b.b.a	ENSGT00940000158431.a.a.a.a.b.b.b	ENSGT00390000018619	ENSGT00940000167385	ENSGT00940000166272	ENSGT00940000164944	ENSGT00940000166263	ENSGT00940000157492.b #19	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #25	ENSGT00390000018086 #26	ENSGT00940000158144.a	ENSGT00940000166906	ENSGT00940000156102.q.a.a	ENSGT00940000166544.b	ENSGT00940000155186	ENSGT00940000166014	ENSGT00940000165930.A	ENSGT00940000165930.B	ENSGT01100000264020	ENSGT00940000164012.C.i.a	ENSGT00940000164012.C.i.b	ENSGT00940000164012.B
Pleuronectoidei	ANCESTRAL SPECIES	8	ENSGT00940000165983	ENSGT00940000167566	ENSGT00610000086112	ENSGT00530000063907.c #10	ENSGT00940000157876 #11	ENSGT00940000164012.A.i	ENSGT00530000067979	ENSGT00940000157242.a.a	ENSGT00390000018319.a.b.b.a	ENSGT00390000018619	ENSGT00940000158431.a.a.a.a.b.b.b	ENSGT00940000166272	ENSGT00940000164944	ENSGT00940000166263	ENSGT00940000157492.b #19	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #25	ENSGT00390000018086 #26	ENSGT00940000158144.a	ENSGT00940000166906	ENSGT00940000156102.q.a.a	ENSGT00940000166544.b	ENSGT00940000155186	ENSGT00940000166014	ENSGT00940000165930.A	ENSGT00940000165930.B	ENSGT00940000164012.C.i.a	ENSGT00940000164012.C.i.b	ENSGT00940000164012.B	ENSGT00950000183049.E
Turbot	MODERN SPECIES	21	ENSSMAG00000008448	ENSSMAG00000022007	ENSSMAG00000008478	fam172a (ENSSMAG00000008586) #10	nr2f1a (ENSSMAG00000008630) #11	ENSSMAG00000008703	ENSSMAG00000008718	ENSSMAG00000008727	ENSSMAG00000008757	ENSSMAG00000025218	ENSSMAG00000008811	wdr54 (ENSSMAG00000008814)	ENSSMAG00000008831	ENSSMAG00000008870	mef2cb (ENSSMAG00000008887) #19	tmem161b (ENSSMAG00000008948) #22	ccnh (ENSSMAG00000008982) #23	RASA1 (ENSSMAG00000009031) #25	COX7C (ENSSMAG00000009118) #26	EDIL3 (ENSSMAG00000009133)	ENSSMAG00000035326	ENSSMAG00000009163	ENSSMAG00000009177	TMEM167A (ENSSMAG00000009194)	ENSSMAG00000027869	ENSSMAG00000033038	ENSSMAG00000009236	ENSSMAG00000009256	ENSSMAG00000009278	ENSSMAG00000009338	ENSSMAG00000009356
Tongue sole	DUPLICATION
Tongue sole	MODERN SPECIES	398	ENSCSEG00000014811	mlxip (ENSCSEG00000014767)	ENSCSEG00000014754	ENSCSEG00000014748	zcchc8 (ENSCSEG00000014732)	rsrc2 (ENSCSEG00000014723)	KNTC1 (ENSCSEG00000014672)	HCAR1 (ENSCSEG00000014656)	hip1rb (ENSCSEG00000014573)	rilpl2 (ENSCSEG00000014557)	ENSCSEG00000014546	mtrfr (ENSCSEG00000014536)	ENSCSEG00000014245	ENSCSEG00000014198	mef2cb (ENSCSEG00000014176) #19	tmem161b (ENSCSEG00000014135) #22	bmp2k (ENSCSEG00000014120)	fras1 (ENSCSEG00000014030)	mrpl1 (ENSCSEG00000014014)	cnot6l (ENSCSEG00000014001)	EEIG1 (ENSCSEG00000013982)	tmem127 (ENSCSEG00000013978)	gle1 (ENSCSEG00000013971)	ptgesl (ENSCSEG00000013962)	ralgds (ENSCSEG00000013932)	SMARCB1 (ENSCSEG00000013915)	MMP11 (ENSCSEG00000013903)	gstt1a (ENSCSEG00000013896)	trpm6 (ENSCSEG00000013825)	anxa1a (ENSCSEG00000013804)	MFSD3 (ENSCSEG00000013796)
Tongue sole	MODERN SPECIES	397	ENSCSEG00000012137	ENSCSEG00000012130	ENSCSEG00000012125	ENSCSEG00000012084	ENSCSEG00000012067	ENSCSEG00000012058	araf (ENSCSEG00000012037)	zgc:64051 (ENSCSEG00000012032)	oclnb (ENSCSEG00000012015)	marveld2b (ENSCSEG00000012007)	ENSCSEG00000011994	ENSCSEG00000011990	ENSCSEG00000011980	ENSCSEG00000011972	ENSCSEG00000011966 ##22	tmem161b (ENSCSEG00000011961) #22	ENSCSEG00000011955	ENSCSEG00000011946	ENSCSEG00000011929	morc2 (ENSCSEG00000011888)	ENSCSEG00000011875	erap2 (ENSCSEG00000011850)	ENSCSEG00000011845	rgmb (ENSCSEG00000011842)	ENSCSEG00000011840	ENSCSEG00000011821	ENSCSEG00000011800	vcp (ENSCSEG00000011768)	ENSCSEG00000011763	ENSCSEG00000011759	ENSCSEG00000011750
Carangaria_A	ANCESTRAL SPECIES	6	ENSGT00940000158953	ENSGT00610000086112	ENSGT00530000063907.c #10	ENSGT00940000157876 #11	ENSGT00940000174528	ENSGT00940000164012.A.i	ENSGT00940000164012.A.j	ENSGT00530000067979	ENSGT00940000157242.a.a	ENSGT00390000018619	ENSGT00940000167385	ENSGT00940000166272	ENSGT00940000164944	ENSGT00940000166263	ENSGT00940000157492.b #19	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #25	ENSGT00390000018086 #26	ENSGT00940000158144.a	ENSGT00940000166906	ENSGT00940000156102.q.a.a	ENSGT00940000166544.b	ENSGT00940000155186	ENSGT00940000166014	ENSGT00940000165930.A	ENSGT00940000165930.B	ENSGT01100000264020	ENSGT00940000164012.C.i.a	ENSGT00940000164012.C.i.b	ENSGT00940000164012.B
Seriola	ANCESTRAL SPECIES	7	ENSGT00660000097118	ENSGT00940000156031.e	ENSGT00940000158953	ENSGT00610000086112	ENSGT00530000063907.c #10	ENSGT00940000157876 #11	ENSGT00940000164012.A.i	ENSGT00940000164012.A.j	ENSGT00530000067979	ENSGT00940000157242.a.a	ENSGT00390000018619	ENSGT00940000166272	ENSGT00940000164944	ENSGT00940000166263	ENSGT00940000157492.b #19	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #25	ENSGT00390000018086 #26	ENSGT00940000158144.a	ENSGT00940000166906	ENSGT00940000156102.q.a.a	ENSGT00940000166544.b	ENSGT00940000155186	ENSGT00940000166014	ENSGT00940000165930.A	ENSGT00940000165930.B	ENSGT00940000164012.C.i.a.f	ENSGT01100000264020	ENSGT00940000164012.C.i.a.e	ENSGT00940000164012.C.i.b
Greater amberjack	MODERN SPECIES	6	KIAA0825 (ENSSDUG00000017715)	fam172a (ENSSDUG00000017617) #10	nr2f1a (ENSSDUG00000017593) #11	ENSSDUG00000017589	ENSSDUG00000017569	ENSSDUG00000017557	ENSSDUG00000017546	aqp3a (ENSSDUG00000016931)	ENSSDUG00000016862	ENSSDUG00000016850	nol6 (ENSSDUG00000016772)	wdr54 (ENSSDUG00000016743)	rhobtb4 (ENSSDUG00000016679)	ENSSDUG00000016592	mef2cb (ENSSDUG00000016566) #19	tmem161b (ENSSDUG00000016530) #22	ccnh (ENSSDUG00000016522) #23	RASA1 (ENSSDUG00000016434) #25	cox7c (ENSSDUG00000016425) #26	EDIL3 (ENSSDUG00000016384)	hapln1a (ENSSDUG00000016379)	ENSSDUG00000016328	ENSSDUG00000016293	tmem167a (ENSSDUG00000016282)	ENSSDUG00000016276	ENSSDUG00000016266	ENSSDUG00000016255	ENSSDUG00000016240	ENSSDUG00000016187	ENSSDUG00000016171	ENSSDUG00000016157
Yellowtail amberjack	MODERN SPECIES	2440				nr2f1a (ENSSLDG00000016968) #11	ENSSLDG00000016979	ENSSLDG00000016992	ENSSLDG00000017012	aqp3a (ENSSLDG00000017026)	nol6 (ENSSLDG00000017046)	ENSSLDG00000017073	ENSSLDG00000017092	wdr54 (ENSSLDG00000017100)	rhobtb4 (ENSSLDG00000017134)	ENSSLDG00000017185	mef2cb (ENSSLDG00000017215) #19	tmem161b (ENSSLDG00000017317) #22	ccnh (ENSSLDG00000017377) #23	RASA1 (ENSSLDG00000017395) #25
Barramundi perch	MODERN SPECIES	95	fam172a (ENSLCAG00010027878) #10	nr2f1a (ENSLCAG00010027882) #11	ENSLCAG00010027883	ENSLCAG00010027885	ENSLCAG00010027887	ENSLCAG00010027888	aqp3a (ENSLCAG00010027889)	nol6 (ENSLCAG00010027892)	CARTPT (ENSLCAG00010027895)	ENSLCAG00010027896	ENSLCAG00010027897	wdr54 (ENSLCAG00010027900)	rhobtb4 (ENSLCAG00010027901)	ENSLCAG00010027903	mef2cb (ENSLCAG00010027910) #19	tmem161b (ENSLCAG00010027918) #22	ccnh (ENSLCAG00010027920) #23	RASA1 (ENSLCAG00010027922) #25	cox7c (ENSLCAG00010027923) #26	EDIL3 (ENSLCAG00010027924)	hapln1a (ENSLCAG00010027925)	ENSLCAG00010027930	ENSLCAG00010027937	tmem167a (ENSLCAG00010027939)	ENSLCAG00010027942	ENSLCAG00010027944	ENSLCAG00010027947	ENSLCAG00010027959	ENSLCAG00010027961	ENSLCAG00010027962	ssbp2a (ENSLCAG00010027964)
Anabantaria	ANCESTRAL SPECIES	4	ENSGT00530000063907.c #10	ENSGT00940000157876 #11	ENSGT00940000174528	ENSGT00940000164012.A.i	ENSGT00940000164012.A.j	ENSGT00530000067979	ENSGT00940000157242.a.a	ENSGT00390000018319.a.b.b.a	ENSGT00390000018619	ENSGT00940000158431.a.a.a.a.b.b.b	ENSGT00940000166272	ENSGT00940000167385	ENSGT00940000164944	ENSGT00940000166263	ENSGT00940000157492.b #19	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #25	ENSGT00390000018086 #26	ENSGT00940000158144.a	ENSGT00940000166906	ENSGT00940000156102.q.a.b	ENSGT00940000156102.q.a.a	ENSGT00940000166544.b	ENSGT00940000155186	ENSGT00940000166014	ENSGT00940000165930.A	ENSGT00940000164012.C.i.a	ENSGT00940000164012.C.i.b	ENSGT00940000165930.B	ENSGT00950000183049.E
Zig-zag eel	MODERN SPECIES	23	KIAA0825 (ENSMAMG00000011359)	fam172a (ENSMAMG00000011373) #10	nr2f1a (ENSMAMG00000011412) #11	ENSMAMG00000011426	ENSMAMG00000011437	ENSMAMG00000026917	ENSMAMG00000011462	ENSMAMG00000011484	ENSMAMG00000011495	ENSMAMG00000011507	wdr54 (ENSMAMG00000011516)	ENSMAMG00000011523	ENSMAMG00000011535	ENSMAMG00000011550	mef2cb (ENSMAMG00000011560) #19	tmem161b (ENSMAMG00000011592) #22	ccnh (ENSMAMG00000011619) #23	RASA1 (ENSMAMG00000011657) #25	COX7C (ENSMAMG00000027597) #26	EDIL3 (ENSMAMG00000011724)	ENSMAMG00000027965	ENSMAMG00000011767	ENSMAMG00000011814	TMEM167A (ENSMAMG00000011846)	ENSMAMG00000011859	ENSMAMG00000011866	ENSMAMG00000028361	ENSMAMG00000011925	ENSMAMG00000025750	ENSMAMG00000011985	ENSMAMG00000011958
Anabantoidei	ANCESTRAL SPECIES	4	ENSGT00530000063907.c #10	ENSGT00940000157876 #11	ENSGT00940000174528	ENSGT00940000164012.A.i	ENSGT00940000164012.A.j	ENSGT00530000067979	ENSGT00940000157242.a.a	ENSGT00390000018319.a.b.b.a	ENSGT00390000018619	ENSGT00940000158431.a.a.a.a.b.b.b	ENSGT00940000167385	ENSGT00940000166272	ENSGT00940000164944	ENSGT00940000166263	ENSGT00940000157492.b #19	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #25	ENSGT00390000018086 #26	ENSGT00940000158144.a	ENSGT00940000166906	ENSGT00940000156102.q.a.b	ENSGT00940000156102.q.a.a	ENSGT00940000166544.b	ENSGT00940000155186	ENSGT00940000166014	ENSGT00940000165930.A	ENSGT00940000165930.B	ENSGT00940000164012.C.i.a	ENSGT00940000164012.C.i.b	ENSGT00950000183049.E
Siamese fighting fish	MODERN SPECIES	20	KIAA0825 (ENSBSLG00000016648)	fam172a (ENSBSLG00000016840) #10	nr2f1a (ENSBSLG00000016936) #11	ENSBSLG00000017061	ENSBSLG00000017116	ENSBSLG00000017145	ENSBSLG00000017174	aqp3a (ENSBSLG00000017194)	nol6 (ENSBSLG00000017274)	ENSBSLG00000018665	ENSBSLG00000018668	wdr54 (ENSBSLG00000018679)	rhobtb4 (ENSBSLG00000018688)	ENSBSLG00000019107	mef2cb (ENSBSLG00000019183) #19	tmem161b (ENSBSLG00000019435) #22	ccnh (ENSBSLG00000019564) #23	RASA1 (ENSBSLG00000019594) #25	cox7c (ENSBSLG00000001732) #26	EDIL3 (ENSBSLG00000001777)	hapln1a (ENSBSLG00000001845)	ENSBSLG00000001859	ENSBSLG00000001901	tmem167a (ENSBSLG00000001903)	ENSBSLG00000001906	ENSBSLG00000001913	ENSBSLG00000001918	ENSBSLG00000001923	ENSBSLG00000001924	ENSBSLG00000001926	ssbp2a (ENSBSLG00000001953)
Climbing perch	MODERN SPECIES	22	KIAA0825 (ENSATEG00000003405)	fam172a (ENSATEG00000003419) #10	nr2f1a (ENSATEG00000029919) #11	ENSATEG00000003484	ENSATEG00000003559	ENSATEG00000026064	ENSATEG00000003612	ENSATEG00000003619	ENSATEG00000003713	ENSATEG00000026315	ENSATEG00000027754	wdr54 (ENSATEG00000003734)	ENSATEG00000003743	ENSATEG00000003754	mef2cb (ENSATEG00000003768) #19	tmem161b (ENSATEG00000003816) #22	ccnh (ENSATEG00000003872) #23	RASA1 (ENSATEG00000003886) #25	COX7C (ENSATEG00000026925) #26	ENSATEG00000029237	EDIL3 (ENSATEG00000004002)	ENSATEG00000004006	ENSATEG00000027621	ENSATEG00000004104	ENSATEG00000004128	TMEM167A (ENSATEG00000004151)	ENSATEG00000004172	ENSATEG00000004194	ENSATEG00000004259	ENSATEG00000004225	ssbp2a (ENSATEG00000004291)
Eupercaria	ANCESTRAL SPECIES	5	ENSGT00940000157876 #11	ENSGT00940000174528	ENSGT00940000164012.A.i	ENSGT00940000164012.A.j.f	ENSGT00530000067979	ENSGT00940000157242.a.a	ENSGT00390000018319.a.b.b.a	ENSGT01030000240301	ENSGT00390000018619	ENSGT00940000158431.a.a.a.a.b.b.b	ENSGT00940000167385	ENSGT00940000166272	ENSGT00940000164944	ENSGT00940000166263	ENSGT00940000157492.b #19	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #25	ENSGT00390000018086 #26	ENSGT00940000158144.a	ENSGT00940000166906	ENSGT00940000156102.q.a.b	ENSGT00940000156102.q.a.a	ENSGT00940000171478	ENSGT00940000166544.b	ENSGT00940000155186	ENSGT00940000166014	ENSGT00940000165930.A	ENSGT00940000165930.B	ENSGT00940000164012.C.i.a	ENSGT00940000164012.C.i.b
Tetraodontidae	ANCESTRAL SPECIES	12	ENSGT00940000155411.c #13	ENSGT00940000158982	ENSGT00390000016407	ENSGT00940000163496.b.a.d	ENSGT00940000156031.e	ENSGT00940000158953	ENSGT00610000086112	ENSGT00530000063907.c #10	ENSGT00940000157876 #11	ENSGT00940000164012.A.i	ENSGT00940000164012.A.j.e.a.a.b	ENSGT00940000166272	ENSGT00940000164944	ENSGT00940000166263	ENSGT00940000157492.b #19	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #25	ENSGT00390000018086 #26	ENSGT00940000158144.a	ENSGT00940000166906	ENSGT00940000156102.q.a.a	ENSGT00940000171478	ENSGT00940000155186	ENSGT00940000166014	ENSGT00940000165930.A	ENSGT00940000165930.B.p	ENSGT00940000165930.B.o	ENSGT00940000164012.C.i.a	ENSGT00940000164012.B	ENSGT00950000183049.E
Tetraodon	DUPLICATION
Tetraodon	MODERN SPECIES	3	rtkna (ENSTNIG00000009893)	mblac2 (ENSTNIG00000009894) #17	ENSTNIG00000009895	lysmd3 (ENSTNIG00000009896) #15	ENSTNIG00000009897 #14	arrdc3a (ENSTNIG00000009898) #13	arsk (ENSTNIG00000009899)	SKIC3 (ENSTNIG00000009900)	MCTP1 (ENSTNIG00000009901)	ENSTNIG00000000095	fam172a (ENSTNIG00000009902) #10	wdr54 (ENSTNIG00000015444)	rhobtb4 (ENSTNIG00000015443)	ENSTNIG00000015442	mef2cb (ENSTNIG00000015441) #19	tmem161b (ENSTNIG00000015440) #22	ccnh (ENSTNIG00000015439) #23	RASA1 (ENSTNIG00000015438) #25	cox7c (ENSTNIG00000015437) #26	ENSTNIG00000001617	EDIL3 (ENSTNIG00000015436)	hapln1a (ENSTNIG00000015435)	ENSTNIG00000001606	hapln1a (ENSTNIG00000000655)	ENSTNIG00000015434	ENSTNIG00000015433	tmem167a (ENSTNIG00000015432)	ENSTNIG00000015431	zgc:110626 (ENSTNIG00000001081)	ENSTNIG00000000172	ssbp2a (ENSTNIG00000015430)
Tetraodon	MODERN SPECIES	26	ENSTNIG00000002144	ENSTNIG00000002145	ENSTNIG00000002146	ENSTNIG00000006222	ENSTNIG00000002147	ezh2 (ENSTNIG00000004203)	stk38a (ENSTNIG00000002148)	stk35 (ENSTNIG00000002149)	ENSTNIG00000002150	ENSTNIG00000002151	ENSTNIG00000000176	fmr1 (ENSTNIG00000002152)	ENSTNIG00000002153	dnajc25 (ENSTNIG00000002154)	HDAC6 (ENSTNIG00000002155)	ENSTNIG00000002156 #22	ENSTNIG00000002157	ENSTNIG00000002159	ENSTNIG00000002161	ENSTNIG00000002162	ENSTNIG00000000571	ccdc106a (ENSTNIG00000002163)	ENSTNIG00000002164	ENSTNIG00000002165	ENSTNIG00000000063	ENSTNIG00000001583	hlfa (ENSTNIG00000002167)	dtd2 (ENSTNIG00000000153)	dtd2 (ENSTNIG00000000949)	HMX3 (ENSTNIG00000002168)	dtd2 (ENSTNIG00000002169)
Fugu	MODERN SPECIES	13	lysmd3 (ENSTRUG00000001029) #15	ENSTRUG00000025600 #14	arrdc3a (ENSTRUG00000022002) #13	arsk (ENSTRUG00000001991)	SKIC3 (ENSTRUG00000002140)	gig2p (ENSTRUG00000023008)	MCTP1 (ENSTRUG00000002979)	ENSTRUG00000031961	ENSTRUG00000004260	fam172a (ENSTRUG00000004456) #10	nr2f1a (ENSTRUG00000022378) #11	ENSTRUG00000004934	ENSTRUG00000032839	ENSTRUG00000025450	mef2cb (ENSTRUG00000000877) #19	tmem161b (ENSTRUG00000024436) #22	ccnh (ENSTRUG00000021055) #23	RASA1 (ENSTRUG00000001424) #25	cox7c (ENSTRUG00000021356) #26	ENSTRUG00000027436	EDIL3 (ENSTRUG00000001909)	hapln1a (ENSTRUG00000002504)	ENSTRUG00000023341	ENSTRUG00000024618	tmem167a (ENSTRUG00000030059)	ENSTRUG00000022193	ENSTRUG00000032284	ENSTRUG00000019858	zgc:110353 (ENSTRUG00000033159)	zgc:110626 (ENSTRUG00000004658)	ENSTRUG00000026429
Eupecaria_A	ANCESTRAL SPECIES	6	ENSGT00530000063907.c #10	ENSGT00940000157876 #11	ENSGT00940000174528	ENSGT00940000164012.A.i	ENSGT00940000164012.A.j.f	ENSGT00530000067979	ENSGT00940000157242.a.a	ENSGT00390000018319.a.b.b.a	ENSGT00390000018619	ENSGT00940000158431.a.a.a.a.b.b.b	ENSGT00940000167385	ENSGT00940000166272	ENSGT00940000164944	ENSGT00940000166263	ENSGT00940000157492.b #19	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #25	ENSGT00390000018086 #26	ENSGT00940000158144.a	ENSGT00940000166906	ENSGT00940000156102.q.a.b	ENSGT00940000156102.q.a.a	ENSGT00940000166544.b	ENSGT00940000155186	ENSGT00940000166014	ENSGT00940000165930.A	ENSGT00940000165930.B	ENSGT00940000164012.C.i.a	ENSGT00940000164012.C.i.b	ENSGT00940000164012.B
Ballan wrasse	MODERN SPECIES	14		fam172a (ENSLBEG00000007361) #10	nr2f1a (ENSLBEG00000007337) #11	ENSLBEG00000007327	ENSLBEG00000007301	ENSLBEG00000007265	aqp3a (ENSLBEG00000007223)	ENSLBEG00000007180	ENSLBEG00000007166	nol6 (ENSLBEG00000006902)	ENSLBEG00000006809	wdr54 (ENSLBEG00000006784)	rhobtb4 (ENSLBEG00000006733)	ENSLBEG00000006643	mef2cb (ENSLBEG00000006550) #19	tmem161b (ENSLBEG00000006391) #22	ccnh (ENSLBEG00000006360) #23	RASA1 (ENSLBEG00000006216) #25	cox7c (ENSLBEG00000006182) #26	EDIL3 (ENSLBEG00000006158)	hapln1a (ENSLBEG00000006140)	ENSLBEG00000006060	ENSLBEG00000006018	ENSLBEG00000005999	ENSLBEG00000005969	ENSLBEG00000005953	ENSLBEG00000005858	ENSLBEG00000005801	fam219ab (ENSLBEG00000005756)	klf9 (ENSLBEG00000005736)	TRPM3 (ENSLBEG00000005550)
Eupecaria_B	ANCESTRAL SPECIES	6	ENSGT00530000063907.c #10	ENSGT00940000157876 #11	ENSGT00940000174528	ENSGT00940000164012.A.i	ENSGT00940000164012.A.j.f	ENSGT00530000067979	ENSGT00940000157242.a.a	ENSGT00390000018319.a.b.b.a	ENSGT00390000018619	ENSGT00940000158431.a.a.a.a.b.b.b	ENSGT00940000167385	ENSGT00940000166272	ENSGT00940000164944	ENSGT00940000166263	ENSGT00940000157492.b #19	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #25	ENSGT00390000018086 #26	ENSGT00940000158144.a	ENSGT00940000166906	ENSGT00940000156102.q.a.b	ENSGT00940000156102.q.a.a	ENSGT00940000166544.b	ENSGT00940000155186	ENSGT00940000166014	ENSGT00940000165930.A	ENSGT00940000165930.B	ENSGT00940000164012.C.i.a	ENSGT00940000164012.C.i.b	ENSGT00940000164012.B
Eupecaria_C	ANCESTRAL SPECIES	3	ENSGT00530000063907.c #10	ENSGT00940000157876 #11	ENSGT00940000174528	ENSGT00940000164012.A.i	ENSGT00940000164012.A.j.e.a.b	ENSGT00530000067979	ENSGT00940000157242.a.a	ENSGT00390000018319.a.b.b.a	ENSGT00390000018619	ENSGT00940000158431.a.a.a.a.b.b.b	ENSGT00940000167385	ENSGT00940000166272	ENSGT00940000164944	ENSGT00940000166263	ENSGT00940000157492.b #19	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #25	ENSGT00390000018086 #26	ENSGT00940000158144.a	ENSGT00940000166906	ENSGT00940000156102.q.a.b	ENSGT00940000156102.q.a.a	ENSGT00940000166544.b	ENSGT00940000155186	ENSGT00940000166014	ENSGT00940000165930.A	ENSGT00940000165930.B	ENSGT00940000164012.C.i.a	ENSGT00940000164012.C.i.b	ENSGT00940000164012.B
Gilthead seabream	MODERN SPECIES	19	ENSSAUG00010023542	ENSSAUG00010023550	ENSSAUG00010023551	ENSSAUG00010023554	ENSSAUG00010023556	ENSSAUG00010023559	aqp3a (ENSSAUG00010023560)	nol6 (ENSSAUG00010023590)	ENSSAUG00010024043	ENSSAUG00010024044	ENSSAUG00010024045	wdr54 (ENSSAUG00010024047)	rhobtb4 (ENSSAUG00010024048)	ENSSAUG00010024071	mef2cb (ENSSAUG00010024074) #19	tmem161b (ENSSAUG00010024079) #22	ccnh (ENSSAUG00010024115) #23	RASA1 (ENSSAUG00010024140) #25	COX7c (ENSSAUG00010024581) #26	EDIL3 (ENSSAUG00010024582)	hapln1a (ENSSAUG00010024583)	ENSSAUG00010024584	ENSSAUG00010024588	tmem167a (ENSSAUG00010000196)	ENSSAUG00010000209	ENSSAUG00010000228	ENSSAUG00010000244	ENSSAUG00010000251	ENSSAUG00010000256	ENSSAUG00010000259	ENSSAUG00010000272
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	9	ENSGT00530000063907.c #10	ENSGT00940000157876 #11	ENSGT00940000174528	ENSGT00940000164012.A.i	ENSGT00940000164012.A.j.e.a.b	ENSGT00530000067979	ENSGT00940000157242.a.a	ENSGT00390000018319.a.b.b.a	ENSGT00940000158431.a.a.a.a.b.b.b	ENSGT00390000018619	ENSGT00940000167385	ENSGT00940000166272	ENSGT00940000164944	ENSGT00940000166263	ENSGT00940000157492.b #19	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #25	ENSGT00390000018086 #26	ENSGT00940000158144.a	ENSGT00940000166906	ENSGT00940000156102.q.a.b	ENSGT00940000156102.q.a.a	ENSGT00940000166544.b	ENSGT00940000155186	ENSGT00940000166014	ENSGT00940000165930.A	ENSGT00940000165930.B	ENSGT00940000164012.C.i.a	ENSGT00940000164012.C.i.b	ENSGT00940000164012.B
European seabass	MODERN SPECIES	13	ENSDLAG00005034840	ENSDLAG00005034861	ENSDLAG00005004747	ENSDLAG00005026955	ENSDLAG00005031490	ENSDLAG00005033161	ENSDLAG00005025965	ENSDLAG00005028189	ENSDLAG00005025963	ENSDLAG00005025945	ENSDLAG00005025940	wdr54 (ENSDLAG00005025938)	ENSDLAG00005025931	ENSDLAG00005025921	mef2cb (ENSDLAG00005025910) #19	tmem161b (ENSDLAG00005025903) #22	ccnh (ENSDLAG00005025901) #23	RASA1 (ENSDLAG00005025876) #25	COX7C (ENSDLAG00005025866) #26	EDIL3 (ENSDLAG00005025863)	ENSDLAG00005025860	ENSDLAG00005033012	ENSDLAG00005025855	ENSDLAG00005025851	TMEM167A (ENSDLAG00005026698)	ENSDLAG00005025846	ENSDLAG00005025845	ENSDLAG00005034660	ENSDLAG00005025839	ENSDLAG00005025836	ENSDLAG00005025833
Large yellow croaker	MODERN SPECIES	2	ENSLCRG00005011909	ENSLCRG00005011912	ENSLCRG00005011970	ENSLCRG00005011972	ENSLCRG00005011975	ENSLCRG00005011977	aqp3a (ENSLCRG00005011978)	nol6 (ENSLCRG00005011991)	ENSLCRG00005012149	ENSLCRG00005012150	ENSLCRG00005012151	wdr54 (ENSLCRG00005012153)	rhobtb4 (ENSLCRG00005012155)	ENSLCRG00005012213	mef2cb (ENSLCRG00005012226) #19	tmem161b (ENSLCRG00005012232) #22	ccnh (ENSLCRG00005012235) #23	RASA1 (ENSLCRG00005012270) #25	cox7c (ENSLCRG00005012836) #26	EDIL3 (ENSLCRG00005012840)	hapln1a (ENSLCRG00005012841)	ENSLCRG00005012842	ENSLCRG00005012845	tmem167a (ENSLCRG00005012847)	ENSLCRG00005012851	zgc:110353 (ENSLCRG00005012852)	ENSLCRG00005012853	ENSLCRG00005012854	ENSLCRG00005012856	ENSLCRG00005012857	ssbp2a (ENSLCRG00005012862)
Perciformes	ANCESTRAL SPECIES	6	ENSGT00610000086112	ENSGT00530000063907.c #10	ENSGT00940000157876 #11	ENSGT00940000164012.A.i	ENSGT00940000164012.A.j.f	ENSGT00530000067979	ENSGT00940000157242.a.a	ENSGT00390000018319.a.b.b.a	ENSGT00390000018619	ENSGT00940000158431.a.a.a.a.b.b.b	ENSGT00940000167385	ENSGT00940000166272	ENSGT00940000164944	ENSGT00940000166263	ENSGT00940000157492.b #19	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #25	ENSGT00390000018086 #26	ENSGT00940000158144.a	ENSGT00940000166906	ENSGT00940000156102.q.a.a	ENSGT00940000166544.b	ENSGT00940000155186	ENSGT00940000166014	ENSGT00940000165930.A	ENSGT00940000165930.B	ENSGT00940000164012.C.i.a	ENSGT00940000164012.C.i.b	ENSGT00940000164012.B	ENSGT00950000183049.E
Cottioidei	ANCESTRAL SPECIES	11	ENSGT00530000063907.c #10	ENSGT00940000157876 #11	ENSGT00940000164012.A.i	ENSGT00940000164012.A.j.f	ENSGT00530000067979	ENSGT00940000157242.a.a	ENSGT01030000240301	ENSGT00940000158431.a.a.a.a.b.b.b	ENSGT00390000018619	ENSGT00960000187962	ENSGT00940000166272	ENSGT00940000164944	ENSGT00940000166263	ENSGT00940000157995 #18	ENSGT00940000157492.b #19	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #25	ENSGT00390000018086 #26	ENSGT00940000158144.a	ENSGT00940000166906	ENSGT00940000156102.q.a.a	ENSGT00940000166544.b	ENSGT00940000155186	ENSGT00940000166014	ENSGT00940000165930.A	ENSGT00940000165930.B	ENSGT00940000164012.C.i.a	ENSGT00940000164012.B	ENSGT00950000183049.E	ENSGT00510000050125.b.a.a
Lumpfish	MODERN SPECIES	24	MCTP1 (ENSCLMG00005021311)	ENSCLMG00005021310	fam172a (ENSCLMG00005021287) #10	nr2f1a (ENSCLMG00005021264) #11	ENSCLMG00005021261	ENSCLMG00005021260	ENSCLMG00005021259	aqp3a (ENSCLMG00005021257)	ENSCLMG00005021256	nol6 (ENSCLMG00005020818)	ENSCLMG00005020801	wdr54 (ENSCLMG00005020799)	rhobtb4 (ENSCLMG00005020795)	ENSCLMG00005020793	mef2cb (ENSCLMG00005020784) #19	tmem161b (ENSCLMG00005020778) #22	ccnh (ENSCLMG00005020776) #23	RASA1 (ENSCLMG00005020356) #25	cox7c (ENSCLMG00005020349) #26	EDIL3 (ENSCLMG00005020348)	hapln1a (ENSCLMG00005020343)	ENSCLMG00005020342	ENSCLMG00005020341	tmem167a (ENSCLMG00005020340)	ENSCLMG00005020339	ENSCLMG00005020338	ENSCLMG00005020337	zgc:110626 (ENSCLMG00005020336)	ssbp2a (ENSCLMG00005019300)	f2r (ENSCLMG00005019280)	F2RL2 (ENSCLMG00005019278)
Stickleback	MODERN SPECIES	12	KIAA0825 (ENSGACG00000010402)	fam172a (ENSGACG00000010397) #10	ENSGACG00000010395	nr2f1a (ENSGACG00000010385) #11	ENSGACG00000010379	ENSGACG00000010375	ENSGACG00000010369	aqp3a (ENSGACG00000010315)	ENSGACG00000010311	nol6 (ENSGACG00000010296)	wdr54 (ENSGACG00000010293)	rhobtb4 (ENSGACG00000010281)	ENSGACG00000010275	mef2cb (ENSGACG00000010270) #19	ENSGACG00000010269	tmem161b (ENSGACG00000010257) #22	ccnh (ENSGACG00000010245) #23	RASA1 (ENSGACG00000010225) #25	cox7c (ENSGACG00000010223) #26	EDIL3 (ENSGACG00000010214)	hapln1a (ENSGACG00000010212)	ENSGACG00000010187	ENSGACG00000010182	zgc:110626 (ENSGACG00000010177)	ENSGACG00000010176	ssbp2a (ENSGACG00000010152)	ENSGACG00000010148	ENSGACG00000010145	ENSGACG00000010141	f2r (ENSGACG00000010138)	F2RL2 (ENSGACG00000010134)
Perciformes_a	ANCESTRAL SPECIES	4	ENSGT00610000086112	ENSGT00530000063907.c #10	ENSGT00940000157876 #11	ENSGT00940000164012.A.i	ENSGT00940000164012.A.j.f	ENSGT00530000067979	ENSGT00940000157242.a.a	ENSGT00390000018319.a.b.b.a	ENSGT00390000018619	ENSGT00940000158431.a.a.a.a.b.b.b	ENSGT00940000167385	ENSGT00940000166272	ENSGT00940000164944	ENSGT00940000166263	ENSGT00940000157492.b #19	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #25	ENSGT00390000018086 #26	ENSGT00940000158144.a	ENSGT00940000166906	ENSGT00940000156102.q.a.a	ENSGT00940000166544.b	ENSGT00940000155186	ENSGT00940000166014	ENSGT00940000165930.A	ENSGT00940000165930.B	ENSGT00940000164012.C.i.a	ENSGT00950000183049.E	ENSGT00510000050125.b.a.a	ENSGT00510000050125.b.a.b
Channel bull blenny	MODERN SPECIES	23	KIAA0825 (ENSCGOG00000007564)	fam172a (ENSCGOG00000007581) #10	nr2f1a (ENSCGOG00000007625) #11	ENSCGOG00000007677	ENSCGOG00000007682	ENSCGOG00000007695	aqp3a (ENSCGOG00000007701)	nol6 (ENSCGOG00000007720)	ENSCGOG00000007845	ENSCGOG00000007847	ENSCGOG00000007848	wdr54 (ENSCGOG00000007853)	rhobtb4 (ENSCGOG00000007870)	ENSCGOG00000007993	mef2cb (ENSCGOG00000008034) #19	tmem161b (ENSCGOG00000009180) #22	ccnh (ENSCGOG00000011232) #23	RASA1 (ENSCGOG00000009588) #25	cox7c (ENSCGOG00000011241) #26	EDIL3 (ENSCGOG00000011248)	hapln1a (ENSCGOG00000011381)	ENSCGOG00000011382	ENSCGOG00000011385	ENSCGOG00000011389	tmem167a (ENSCGOG00000011391)	ENSCGOG00000011392	ENSCGOG00000011393	zgc:110353 (ENSCGOG00000011394)	ENSCGOG00000011396	ENSCGOG00000011397	ENSCGOG00000011399
Pike perch	MODERN SPECIES	23	nr2f1a (ENSSLUG00000003995) #11	ENSSLUG00000004033	ENSSLUG00000004038	ENSSLUG00000004047	ENSSLUG00000004058	ENSSLUG00000004068	ENSSLUG00000004079	aqp3a (ENSSLUG00000004089)	nol6 (ENSSLUG00000004204)	ENSSLUG00000005597	ENSSLUG00000005614	wdr54 (ENSSLUG00000005618)	rhobtb4 (ENSSLUG00000005656)	ENSSLUG00000005716	mef2cb (ENSSLUG00000005748) #19	tmem161b (ENSSLUG00000005857) #22	ccnh (ENSSLUG00000006071) #23	RASA1 (ENSSLUG00000006142) #25	cox7c (ENSSLUG00000005215) #26	EDIL3 (ENSSLUG00000005243)	hapln1a (ENSSLUG00000005315)	ENSSLUG00000005380	ENSSLUG00000005441	tmem167a (ENSSLUG00000005447)	ENSSLUG00000005453	ENSSLUG00000005458	zgc:110626 (ENSSLUG00000005476)	ssbp2a (ENSSLUG00000005602)	f2r (ENSSLUG00000007139)	iqgap2 (ENSSLUG00000007830)	F2RL2 (ENSSLUG00000020097)
Ovalentaria	ANCESTRAL SPECIES	4	ENSGT00530000063907.c #10	ENSGT00940000157876 #11	ENSGT00940000174528	ENSGT00940000164012.A.i	ENSGT00940000164012.A.j	ENSGT00530000067979	ENSGT00940000157242.a.a	ENSGT00390000018319.a.b.b.a	ENSGT00940000158431.a.a.a.a.b.b.b	ENSGT00390000018619	ENSGT00940000167385	ENSGT00940000166272	ENSGT00940000164944	ENSGT00940000166263	ENSGT00940000157492.b #19	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #25	ENSGT00390000018086 #26	ENSGT00940000158144.a	ENSGT00940000166906	ENSGT00940000156102.q.a.b	ENSGT00940000156102.q.a.a	ENSGT00940000166544.b	ENSGT00940000155186	ENSGT00940000166014	ENSGT00940000165930.A	ENSGT00940000164012.C.i.a	ENSGT00940000165930.B	ENSGT00940000164012.C.i.b	ENSGT00940000164012.B
Atherinomorphae	ANCESTRAL SPECIES	1	ENSGT00940000158953	ENSGT00610000086112	ENSGT00530000063907.c #10	ENSGT00940000157876 #11	ENSGT00940000164012.A.i	ENSGT00940000164012.A.j	ENSGT00530000067979	ENSGT00940000157242.a.a	ENSGT00390000018319.a.b.b.a	ENSGT00940000158431.a.a.a.a.b.b.b	ENSGT00390000018619	ENSGT00940000166272	ENSGT00940000164944	ENSGT00940000166263	ENSGT00940000157492.b #19	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #25	ENSGT00390000018086 #26	ENSGT00940000158144.a	ENSGT00940000166906	ENSGT00940000156102.q.a.b	ENSGT00940000156102.q.a.a	ENSGT00940000166544.b	ENSGT00940000155186	ENSGT00940000166014	ENSGT00940000165930.A	ENSGT00940000165930.B.h	ENSGT00940000164012.C.i.a	ENSGT00940000165930.B.g	ENSGT00940000164012.C.i.b
Oryzias	ANCESTRAL SPECIES	7	ENSGT00940000156031.e	ENSGT00940000158953	ENSGT00940000165033	ENSGT00530000063907.c #10	ENSGT00940000157876 #11	ENSGT00940000164012.A.i	ENSGT00530000067979	ENSGT00940000157242.a.a	ENSGT00390000018319.a.b.b.a	ENSGT00390000018619	ENSGT00940000155779.b.b	ENSGT00940000166272	ENSGT00940000164944	ENSGT00940000166263	ENSGT00940000157492.b #19	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #25	ENSGT00390000018086 #26	ENSGT00940000158144.a	ENSGT00940000166906	ENSGT00940000156102.q.a.b	ENSGT00940000156102.q.a.a	ENSGT00940000166544.b	ENSGT00940000155186	ENSGT00940000166014	ENSGT00940000165930.A	ENSGT00940000164012.C.i.a.o	ENSGT00940000165930.B.g	ENSGT00940000164012.C.i.a.p	ENSGT00940000164012.C.i.b
Oryzias_a	ANCESTRAL SPECIES	3	ENSGT00940000156031.e	ENSGT00940000158953	ENSGT00940000165033	ENSGT00530000063907.c #10	ENSGT00940000157876 #11	ENSGT00940000164012.A.i	ENSGT00530000067979	ENSGT00940000157242.a.a	ENSGT00390000018319.a.b.b.a	ENSGT00390000018619	ENSGT00940000155779.b.b	ENSGT00940000166272	ENSGT00940000164944	ENSGT00940000166263	ENSGT00940000157492.b #19	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #25	ENSGT00390000018086 #26	ENSGT00940000158144.a	ENSGT00940000166906	ENSGT00940000156102.q.a.b	ENSGT00940000156102.q.a.a	ENSGT00940000166544.b	ENSGT00940000155186	ENSGT00940000166014	ENSGT00940000165930.A	ENSGT00940000164012.C.i.a.o	ENSGT01030000236208	ENSGT00940000165930.B.g	ENSGT00940000164012.C.i.a.p
Japanese Medaka HdrR	MODERN SPECIES	23	SLF1 (ENSORLG00000029227)	ENSORLG00000010225	fam172a (ENSORLG00000010210) #10	nr2f1a (ENSORLG00000010191) #11	ENSORLG00000010183	ENSORLG00000029667	aqp3a (ENSORLG00000010176)	ENSORLG00000025826	nol6 (ENSORLG00000010159)	ENSORLG00000015946	ENSORLG00000025203	wdr54 (ENSORLG00000010104)	rhobtb4 (ENSORLG00000010078)	ENSORLG00000029781	mef2cb (ENSORLG00000010062) #19	tmem161b (ENSORLG00000010044) #22	ccnh (ENSORLG00000009984) #23	RASA1 (ENSORLG00000009952) #25	cox7c (ENSORLG00000009910) #26	EDIL3 (ENSORLG00000009900)	hapln1a (ENSORLG00000029206)	ENSORLG00000009876	ENSORLG00000024087	ENSORLG00000009844	tmem167a (ENSORLG00000009841)	ENSORLG00000009836	ENSORLG00000024968	ENSORLG00000025317	ENSORLG00000025971	ENSORLG00000024762	zgc:110626 (ENSORLG00000009825)
Chinese medaka	MODERN SPECIES	528											wdr54 (ENSOSIG00000008415)	rhobtb4 (ENSOSIG00000008407)	ENSOSIG00000008403	ENSOSIG00000008400	mef2cb (ENSOSIG00000008375) #19	tmem161b (ENSOSIG00000008367) #22	ccnh (ENSOSIG00000008365) #23	RASA1 (ENSOSIG00000004169) #25	cox7c (ENSOSIG00000004046) #26	EDIL3 (ENSOSIG00000003851)	hapln1a (ENSOSIG00000003813)	ENSOSIG00000003778	ENSOSIG00000003759	ENSOSIG00000003741	ENSOSIG00000023866	tmem167a (ENSOSIG00000023865)	ENSOSIG00000023864	ENSOSIG00000023863	ENSOSIG00000023862	ENSOSIG00000023861	ENSOSIG00000023860
Oryzias_b	ANCESTRAL SPECIES	6	ENSGT00940000158953	ENSGT00940000165033	ENSGT00530000063907.c #10	ENSGT00940000157876 #11	ENSGT00940000164012.A.i.c	ENSGT00940000164012.A.i.d.a	ENSGT00530000067979	ENSGT00940000157242.a.a	ENSGT00390000018319.a.b.b.a	ENSGT00390000018619	ENSGT00940000155779.b.b	ENSGT00940000166272	ENSGT00940000164944	ENSGT00940000166263	ENSGT00940000157492.b #19	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #25	ENSGT00390000018086 #26	ENSGT00940000158144.a	ENSGT00940000166906	ENSGT00940000156102.q.a.a	ENSGT00940000166544.b	ENSGT00940000155186	ENSGT00940000166014	ENSGT00940000165930.A	ENSGT00940000164012.C.i.a.o	ENSGT00940000165930.B.g	ENSGT00940000164012.C.i.a.p	ENSGT00940000164012.C.i.b	ENSGT00940000164012.B
Indian medaka	MODERN SPECIES	11	ENSOMEG00000007177	ENSOMEG00000007141	fam172a (ENSOMEG00000007066) #10	nr2f1a (ENSOMEG00000006988) #11	ENSOMEG00000006972	ENSOMEG00000006945	ENSOMEG00000006925	aqp3a (ENSOMEG00000006914)	nol6 (ENSOMEG00000006877)	ENSOMEG00000006829	ENSOMEG00000006780	wdr54 (ENSOMEG00000006605)	rhobtb4 (ENSOMEG00000006579)	ENSOMEG00000006514	mef2cb (ENSOMEG00000006457) #19	tmem161b (ENSOMEG00000006400) #22	ccnh (ENSOMEG00000006283) #23	RASA1 (ENSOMEG00000006347) #25	ENSOMEG00000006252	cox7c (ENSOMEG00000006244) #26	EDIL3 (ENSOMEG00000006226)	hapln1a (ENSOMEG00000006182)	ENSOMEG00000006164	TAAR1 (ENSOMEG00000006144)	ENSOMEG00000006134	tmem167a (ENSOMEG00000000141)	ENSOMEG00000006046	ENSOMEG00000006034	ENSOMEG00000006013	ENSOMEG00000005993	ENSOMEG00000005955
Cyprinodontiformes	ANCESTRAL SPECIES	1	ENSGT00940000158953	ENSGT00610000086112	ENSGT00530000063907.c #10	ENSGT00940000157876 #11	ENSGT00940000164012.A.i	ENSGT00940000164012.A.j	ENSGT00530000067979	ENSGT00940000157242.a.a	ENSGT00390000018319.a.b.b.a	ENSGT00940000158431.a.a.a.a.b.b.b	ENSGT00390000018619	ENSGT00940000166272	ENSGT00940000164944	ENSGT00940000166263	ENSGT00940000157492.b #19	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #25	ENSGT00390000018086 #26	ENSGT00940000158144.a	ENSGT00940000166906	ENSGT00940000156102.q.a.b	ENSGT00940000156102.q.a.a	ENSGT00940000166544.b	ENSGT00940000155186	ENSGT00940000166014	ENSGT00940000165930.A	ENSGT00940000165930.B.h	ENSGT00940000164012.C.i.a	ENSGT00940000165930.B.g	ENSGT01100000264020
Aplocheiloidei	ANCESTRAL SPECIES	20	ENSGT00940000158953	ENSGT00610000086112	ENSGT00530000063907.c #10	ENSGT00940000157876 #11	ENSGT00940000164012.A.i	ENSGT00940000164012.A.j.a	ENSGT00530000067979	ENSGT00940000157242.a.a	ENSGT00390000018319.a.b.b.a	ENSGT00390000018619	ENSGT00940000158431.a.a.a.a.b.b.b	ENSGT00940000166272	ENSGT00940000164944	ENSGT00940000166263	ENSGT00940000157492.b #19	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #25	ENSGT00390000018086 #26	ENSGT00940000158144.a	ENSGT00940000166906	ENSGT00940000156102.q.a.b
Mangrove rivulus	MODERN SPECIES	106	SLF1 (ENSKMAG00000004385)	KIAA0825 (ENSKMAG00000004427)	fam172a (ENSKMAG00000004554) #10	nr2f1a (ENSKMAG00000004596) #11	ENSKMAG00000004611	ENSKMAG00000004630	ENSKMAG00000004656	ENSKMAG00000004666	aqp3a (ENSKMAG00000004684)	nol6 (ENSKMAG00000004749)	ENSKMAG00000004870	ENSKMAG00000004885	rhobtb4 (ENSKMAG00000004926)	ENSKMAG00000005038	mef2cb (ENSKMAG00000005063) #19	tmem161b (ENSKMAG00000005177) #22	ccnh (ENSKMAG00000005212) #23	RASA1 (ENSKMAG00000005251) #25	cox7c (ENSKMAG00000005280) #26	EDIL3 (ENSKMAG00000005304)	hapln1a (ENSKMAG00000005336)
Turquoise killifish	MODERN SPECIES	1627	NR2F1A (ENSNFUG00015019916) #11	ENSNFUG00015019965	ENSNFUG00015019970	ENSNFUG00015019973	ENSNFUG00015019976	ENSNFUG00015019987	Nfu_g_1_009030 (ENSNFUG00015019996)	aqp3a (ENSNFUG00015020010)	NOL6 (ENSNFUG00015020059)	ENSNFUG00015020277	ENSNFUG00015020285	wdr54 (ENSNFUG00015020289)	rhobtb4 (ENSNFUG00015020311)	ENSNFUG00015020339	mef2cb (ENSNFUG00015020367) #19	TMEM161B (ENSNFUG00015020490) #22	CCNH (ENSNFUG00015020508) #23	RASA1 (ENSNFUG00015020594) #25	cox7c (ENSNFUG00015022752) #26	EDIL3B (ENSNFUG00015022777)	ENSNFUG00015023085	ENSNFUG00015023089	ENSNFUG00015014061	ENSNFUG00015014068	tmem167a (ENSNFUG00015014079)	ENSNFUG00015014089	ENSNFUG00015014101	ENSNFUG00015014113	ENSNFUG00015014139	zgc:110626 (ENSNFUG00015014153)	SSBP2 (ENSNFUG00015014251)
Cyprinodontoidei	ANCESTRAL SPECIES	1	ENSGT00610000086112	ENSGT00530000063907.c #10	ENSGT00940000157876 #11	ENSGT00940000164012.A.i	ENSGT00940000164012.A.j	ENSGT00530000067979	ENSGT00940000157242.a.a	ENSGT00390000018319.a.b.b.a	ENSGT00940000158431.a.a.a.a.b.b.b	ENSGT00940000167385	ENSGT00390000018619	ENSGT00940000166272	ENSGT00940000164944	ENSGT00940000166263	ENSGT00940000157492.b #19	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #25	ENSGT00390000018086 #26	ENSGT00940000158144.a	ENSGT00940000166906	ENSGT00940000156102.q.a.b	ENSGT00940000156102.q.a.a	ENSGT00940000166544.b	ENSGT00940000155186	ENSGT00940000166014	ENSGT00940000165930.A	ENSGT00940000165930.B.h	ENSGT00940000164012.C.i.a.n	ENSGT00940000165930.B.g	ENSGT01100000264020
Poeciliinae	ANCESTRAL SPECIES	5	ENSGT00940000158953	ENSGT00610000086112	ENSGT00530000063907.c #10	ENSGT00940000157876 #11	ENSGT00940000164012.A.i	ENSGT00940000164012.A.j	ENSGT00530000067979	ENSGT00940000157242.a.a	ENSGT00390000018319.a.b.b.a	ENSGT00940000158431.a.a.a.a.b.b.b	ENSGT00390000018619	ENSGT00940000166272	ENSGT00940000164944	ENSGT00940000166263	ENSGT00940000157492.b #19	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #25	ENSGT00390000018086 #26	ENSGT00940000158144.a	ENSGT00940000166906	ENSGT00940000156102.q.a.b	ENSGT00940000156102.q.a.a	ENSGT00940000166544.b	ENSGT00940000155186	ENSGT00940000166014	ENSGT00940000165930.A	ENSGT00940000165930.B.h	ENSGT00940000164012.C.i.a.n	ENSGT00940000165930.B.g	ENSGT01100000264020
Poecilia	ANCESTRAL SPECIES	3	ENSGT00940000158953	ENSGT00610000086112	ENSGT00530000063907.c #10	ENSGT00940000157876 #11	ENSGT00940000164012.A.i	ENSGT00940000164012.A.j	ENSGT00530000067979	ENSGT00940000157242.a.a	ENSGT00390000018319.a.b.b.a	ENSGT00940000158431.a.a.a.a.b.b.b	ENSGT00390000018619	ENSGT00940000166272	ENSGT00940000164944	ENSGT00940000166263	ENSGT00940000157492.b #19	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #25	ENSGT00390000018086 #26	ENSGT00940000158144.a	ENSGT00940000166906	ENSGT00940000156102.q.a.a	ENSGT00940000166544.b	ENSGT00940000155186	ENSGT00940000166014	ENSGT00940000165930.A	ENSGT00940000165930.B.h	ENSGT00940000164012.C.i.a.n	ENSGT00940000165930.B.g	ENSGT01100000264020	ENSGT00940000164012.C.i.a.m
NAME_6	ANCESTRAL SPECIES	9	ENSGT00940000158953	ENSGT00610000086112	ENSGT00530000063907.c #10	ENSGT00940000157876 #11	ENSGT00940000164012.A.i	ENSGT00940000164012.A.j	ENSGT00530000067979	ENSGT00940000157242.a.a	ENSGT00390000018319.a.b.b.a	ENSGT00940000158431.a.a.a.a.b.b.b	ENSGT00390000018619	ENSGT00940000166272	ENSGT00940000164944	ENSGT00940000166263	ENSGT00940000157492.b #19	ENSGT00390000000672.a.b #22	ENSGT00390000008634.n #23	ENSGT00390000008634.m #23	ENSGT00940000155846 #25	ENSGT00390000018086 #26	ENSGT00940000158144.a	ENSGT00940000166906	ENSGT00940000156102.q.a.a
Sailfin molly	MODERN SPECIES	597						ENSPLAG00000001392	aqp3a (ENSPLAG00000001400)	ENSPLAG00000001404	ENSPLAG00000001405	nol6 (ENSPLAG00000001410)	wdr54 (ENSPLAG00000001415)	ENSPLAG00000001416	rhobtb4 (ENSPLAG00000001420)	ENSPLAG00000001434	mef2cb (ENSPLAG00000001441) #19	tmem161b (ENSPLAG00000001450) #22	ccnh (ENSPLAG00000001461) #23
Amazon molly	MODERN SPECIES	257	ENSPFOG00000004695	fam172a (ENSPFOG00000004624) #10	nr2f1a (ENSPFOG00000004554) #11	ENSPFOG00000004475	ENSPFOG00000004446	ENSPFOG00000004438	aqp3a (ENSPFOG00000004339)	ENSPFOG00000004334	nol6 (ENSPFOG00000003825)	wdr54 (ENSPFOG00000003732)	rhobtb4 (ENSPFOG00000003637)	rhobtb4 (ENSPFOG00000003440)	ENSPFOG00000003295	mef2cb (ENSPFOG00000003230) #19	ENSPFOG00000020336	tmem161b (ENSPFOG00000003000) #22	ccnh (ENSPFOG00000002947) #23	ccnh (ENSPFOG00000002746) #23	RASA1 (ENSPFOG00000002347) #25	cox7c (ENSPFOG00000002316) #26	EDIL3 (ENSPFOG00000002185)	hapln1a (ENSPFOG00000002114)	ENSPFOG00000001846	tmem167a (ENSPFOG00000001752)	ENSPFOG00000001744	ENSPFOG00000023640	ENSPFOG00000001705
Guppy	MODERN SPECIES	461	MCTP1 (ENSPREG00000005200)	SLF1 (ENSPREG00000005148)	ENSPREG00000005096	fam172a (ENSPREG00000005027) #10	nr2f1a (ENSPREG00000004976) #11	ENSPREG00000004947	ENSPREG00000004907	aqp3a (ENSPREG00000004869)	ENSPREG00000004850	ENSPREG00000004845	nol6 (ENSPREG00000004807)	wdr54 (ENSPREG00000004773)	rhobtb4 (ENSPREG00000004711)	ENSPREG00000004666	mef2cb (ENSPREG00000004581) #19	tmem161b (ENSPREG00000004456) #22	ccnh (ENSPREG00000004416) #23	RASA1 (ENSPREG00000004344) #25	cox7c (ENSPREG00000004324) #26	EDIL3 (ENSPREG00000004288)	hapln1a (ENSPREG00000004256)	ENSPREG00000004230	ENSPREG00000004208	ENSPREG00000004192	tmem167a (ENSPREG00000004173)	ENSPREG00000004162	ENSPREG00000004147	ENSPREG00000004131	ENSPREG00000004116	ENSPREG00000004089	ENSPREG00000004065
Platyfish	MODERN SPECIES	3	KIAA0825 (ENSXMAG00000019403)	fam172a (ENSXMAG00000019404) #10	nr2f1a (ENSXMAG00000019406) #11	ENSXMAG00000005346	ENSXMAG00000005344	ENSXMAG00000023380	aqp3a (ENSXMAG00000019407)	ENSXMAG00000021334	ENSXMAG00000019410	nol6 (ENSXMAG00000019408)	wdr54 (ENSXMAG00000019411)	rhobtb4 (ENSXMAG00000019412)	ENSXMAG00000026131	ENSXMAG00000021270	mef2cb (ENSXMAG00000019414) #19	tmem161b (ENSXMAG00000019415) #22	ccnh (ENSXMAG00000024700) #23	RASA1 (ENSXMAG00000019416) #25	cox7c (ENSXMAG00000019418) #26	EDIL3 (ENSXMAG00000025625)	ENSXMAG00000022930	hapln1a (ENSXMAG00000024296)	ENSXMAG00000008743	ENSXMAG00000024568	ENSXMAG00000025960	tmem167a (ENSXMAG00000027342)	ENSXMAG00000029021	ENSXMAG00000020919	ENSXMAG00000023025	ENSXMAG00000006755	zgc:110626 (ENSXMAG00000006771)
NAME_4	ANCESTRAL SPECIES	13	ENSGT00940000158953	ENSGT00610000086112	ENSGT00530000063907.c #10	ENSGT00940000157876 #11	ENSGT00940000164012.A.i	ENSGT00530000067979	ENSGT00940000157242.a.a	ENSGT00390000018619	ENSGT00390000018319.a.b.b.a	ENSGT00940000158431.a.a.a.a.b.b.b	ENSGT00940000167385	ENSGT00940000166272	ENSGT00940000164944	ENSGT00940000166263	ENSGT00940000157492.b #19	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #25	ENSGT00390000018086 #26	ENSGT00940000158144.a	ENSGT00940000166906	ENSGT00940000156102.q.a.a	ENSGT00940000166544.b	ENSGT00940000155186	ENSGT00940000166014	ENSGT00940000165930.A	ENSGT00940000165930.B.h	ENSGT00940000164012.C.i.a.n	ENSGT00940000165930.B.g	ENSGT01100000264020	ENSGT00940000164012.C.i.a.m
Mummichog	MODERN SPECIES	2186	SLF1 (ENSFHEG00000008009)	KIAA0825 (ENSFHEG00000007979)	fam172a (ENSFHEG00000007946) #10	nr2f1a (ENSFHEG00000007911) #11	ENSFHEG00000007897	ENSFHEG00000007865	aqp3 (ENSFHEG00000007836)	nol6 (ENSFHEG00000007788)	CARTPT (ENSFHEG00000007768)	ENSFHEG00000007736	ENSFHEG00000007734	wdr54 (ENSFHEG00000007730)	rhobtb4 (ENSFHEG00000007689)	ENSFHEG00000007669	mef2cb (ENSFHEG00000007641) #19	tmem161b (ENSFHEG00000007540) #22	ccnh (ENSFHEG00000007498) #23	RASA1 (ENSFHEG00000007467) #25	cox7c (ENSFHEG00000007348) #26	EDIL3 (ENSFHEG00000007331)	hapln1a (ENSFHEG00000007303)	ENSFHEG00000007286	ENSFHEG00000007222	tmem167a (ENSFHEG00000007183)	ENSFHEG00000007163	ENSFHEG00000007150	ENSFHEG00000007124	ENSFHEG00000007076	ENSFHEG00000007069	ENSFHEG00000007053	ENSFHEG00000006978
Sheepshead minnow	MODERN SPECIES	215													rhobtb4 (ENSCVAG00000021493)	ENSCVAG00000000692	mef2cb (ENSCVAG00000021608) #19	tmem161b (ENSCVAG00000021674) #22	ccnh (ENSCVAG00000021711) #23	RASA1 (ENSCVAG00000021727) #25	cox7c (ENSCVAG00000021739) #26	EDIL3 (ENSCVAG00000021750)	hapln1a (ENSCVAG00000021762)	ENSCVAG00000021793	ENSCVAG00000021807	tmem167a (ENSCVAG00000021817)	ENSCVAG00000021823	ENSCVAG00000021833	ENSCVAG00000021851	ENSCVAG00000021860	zgc:110353 (ENSCVAG00000021876)	ENSCVAG00000021888	zgc:110626 (ENSCVAG00000021907)
Ovalentaria_B	ANCESTRAL SPECIES	9	ENSGT00530000063907.c #10	ENSGT00940000157876 #11	ENSGT00940000174528	ENSGT00940000164012.A.i	ENSGT00940000164012.A.j	ENSGT00530000067979	ENSGT00940000157242.a.a	ENSGT00390000018319.a.b.b.a	ENSGT00940000158431.a.a.a.a.b.b.b	ENSGT00390000018619	ENSGT00940000167385	ENSGT00940000166272	ENSGT00940000164944	ENSGT00940000166263	ENSGT00940000157492.b #19	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #25	ENSGT00390000018086 #26	ENSGT00940000158144.a	ENSGT00940000166906	ENSGT00940000156102.q.a.b	ENSGT00940000156102.q.a.a	ENSGT00940000166544.b	ENSGT00940000155186	ENSGT00940000166014	ENSGT00940000165930.A	ENSGT00940000165930.B	ENSGT00940000164012.C.i.a	ENSGT00940000164012.C.i.b	ENSGT00940000164012.B
Pomacentridae	ANCESTRAL SPECIES		ENSGT00940000165983	ENSGT00530000063907.c #10	ENSGT00940000157876 #11	ENSGT00940000164012.A.i	ENSGT00940000164012.A.j	ENSGT00530000067979	ENSGT00940000157242.a.a	ENSGT00390000018319.a.b.b.a	ENSGT00390000018619	ENSGT00940000158431.a.a.a.a.b.b.b	ENSGT00940000167385	ENSGT00940000166272	ENSGT00940000164944	ENSGT00940000166263	ENSGT00940000157492.b #19	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #25	ENSGT00390000018086 #26	ENSGT00940000158144.a	ENSGT00940000166906	ENSGT00940000156102.q.a.b	ENSGT00940000156102.q.a.a	ENSGT00940000166544.b	ENSGT00940000155186	ENSGT00940000166014	ENSGT00940000165930.A	ENSGT00940000165930.B	ENSGT00940000164012.C.i.a	ENSGT00940000164012.C.i.b.e	ENSGT00940000164012.C.i.b.f
Pomacentridae_A	ANCESTRAL SPECIES	1	ENSGT00940000165983	ENSGT00530000063907.c #10	ENSGT00940000157876 #11	ENSGT00940000164012.A.i	ENSGT00940000164012.A.j	ENSGT00530000067979	ENSGT00940000157242.a.a	ENSGT00390000018319.a.b.b.a	ENSGT00390000018619	ENSGT00940000158431.a.a.a.a.b.b.b	ENSGT00940000167385	ENSGT00940000166272	ENSGT00940000164944	ENSGT00940000166263	ENSGT00940000157492.b #19	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #25	ENSGT00390000018086 #26	ENSGT00940000158144.a	ENSGT00940000166906	ENSGT00940000156102.q.a.a	ENSGT00940000166544.b	ENSGT00940000155186	ENSGT00940000166014	ENSGT00940000165930.A	ENSGT00940000165930.B	ENSGT00940000164012.C.i.a	ENSGT00940000164012.C.i.b.e	ENSGT00940000164012.C.i.b.f	ENSGT00940000164012.B
Amphiprion	ANCESTRAL SPECIES	10	ENSGT00940000165983	ENSGT00530000063907.c #10	ENSGT00940000157876 #11	ENSGT00940000164012.A.i	ENSGT00940000164012.A.j	ENSGT00530000067979	ENSGT00940000157242.a.a	ENSGT00390000018319.a.b.b.a	ENSGT00390000018619.o	ENSGT00940000158431.a.a.a.a.b.b.b	ENSGT00940000167385	ENSGT00940000166272	ENSGT00940000164944	ENSGT00940000166263	ENSGT00940000157492.b #19	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #25	ENSGT00390000018086 #26	ENSGT00940000158144.a	ENSGT00940000166906	ENSGT00940000156102.q.a.a	ENSGT00940000166544.b	ENSGT00940000155186	ENSGT00940000166014	ENSGT00940000165930.A	ENSGT00940000165930.B	ENSGT00940000164012.C.i.a	ENSGT00940000164012.C.i.b.e	ENSGT00940000164012.C.i.b.f	ENSGT00940000164012.B
Clown anemonefish	MODERN SPECIES	3446														ENSAOCG00000009567	mef2cb (ENSAOCG00000009541) #19	tmem161b (ENSAOCG00000009499) #22	ccnh (ENSAOCG00000009469) #23	RASA1 (ENSAOCG00000009418) #25	cox7c (ENSAOCG00000009330) #26
Orange clownfish	MODERN SPECIES	19	ENSAPEG00000017456	fam172a (ENSAPEG00000017502) #10	nr2f1a (ENSAPEG00000017557) #11	ENSAPEG00000017595	ENSAPEG00000017633	ENSAPEG00000017654	aqp3a (ENSAPEG00000017666)	nol6 (ENSAPEG00000017733)	ENSAPEG00000018094	ENSAPEG00000018106	ENSAPEG00000018112	wdr54 (ENSAPEG00000018143)	rhobtb4 (ENSAPEG00000018250)	ENSAPEG00000018272	mef2cb (ENSAPEG00000018311) #19	tmem161b (ENSAPEG00000018387) #22	ccnh (ENSAPEG00000018429) #23	RASA1 (ENSAPEG00000018456) #25	cox7c (ENSAPEG00000018515) #26	EDIL3 (ENSAPEG00000018562)	hapln1a (ENSAPEG00000018597)	ENSAPEG00000018625	ENSAPEG00000018692	tmem167a (ENSAPEG00000018721)	ENSAPEG00000018730	ENSAPEG00000018737	zgc:110353 (ENSAPEG00000018774)	ENSAPEG00000018784	ENSAPEG00000018839	ENSAPEG00000018859	ENSAPEG00000018877
Spiny chromis	MODERN SPECIES	8	SLF1 (ENSAPOG00000002286)	KIAA0825 (ENSAPOG00000001130)	fam172a (ENSAPOG00000002222) #10	nr2f1a (ENSAPOG00000002196) #11	ENSAPOG00000002183	ENSAPOG00000002177	ENSAPOG00000002167	aqp3a (ENSAPOG00000002152)	nol6 (ENSAPOG00000002135)	ENSAPOG00000002103	ENSAPOG00000000043	wdr54 (ENSAPOG00000002088)	rhobtb4 (ENSAPOG00000002074)	ENSAPOG00000002045	mef2cb (ENSAPOG00000002027) #19	tmem161b (ENSAPOG00000001998) #22	ccnh (ENSAPOG00000001970) #23	RASA1 (ENSAPOG00000001947) #25	cox7c (ENSAPOG00000001906) #26	EDIL3 (ENSAPOG00000001900)	hapln1a (ENSAPOG00000001887)	ENSAPOG00000001864	ENSAPOG00000001838	tmem167a (ENSAPOG00000001827)	ENSAPOG00000001813	ENSAPOG00000001805	ENSAPOG00000001777	ENSAPOG00000001766	ENSAPOG00000001750	ENSAPOG00000001735	ENSAPOG00000001726
Bicolor damselfish	MODERN SPECIES	640															mef2cb (ENSSPAG00000000918) #19	tmem161b (ENSSPAG00000001019) #22	ccnh (ENSSPAG00000001077) #23	RASA1 (ENSSPAG00000001096) #25	cox7c (ENSSPAG00000001197) #26	ENSSPAG00000001211	EDIL3 (ENSSPAG00000001226)
Cichlidae	ANCESTRAL SPECIES	6	ENSGT00610000086112	ENSGT00530000063907.c #10	ENSGT00940000157876 #11	ENSGT00940000174528	ENSGT00940000164012.A.i	ENSGT00940000164012.A.j.c.a	ENSGT00940000157242.a.a	ENSGT00390000018319.a.b.b.a	ENSGT00940000158431.a.a.a.a.b.b.b	ENSGT00390000018619	ENSGT00940000167385	ENSGT00940000166272	ENSGT00940000164944	ENSGT00940000166263	ENSGT00940000157492.b #19	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #25	ENSGT00390000018086 #26	ENSGT00940000158144.a	ENSGT00940000166906	ENSGT00940000156102.q.a.b	ENSGT00940000156102.q.a.a	ENSGT00940000166544.b	ENSGT00940000155186	ENSGT00940000166014	ENSGT00940000165930.A	ENSGT00940000165930.B	ENSGT00940000164012.C.i.a	ENSGT00940000164012.C.i.b	ENSGT00940000164012.B
Pseudocrenilabrinae	ANCESTRAL SPECIES	11	ENSGT00940000164012.A.j.c.a.b	ENSGT00940000164012.A.j.c.a.a.a	ENSGT00940000157242.a.a.f	ENSGT00940000164012.A.j.c.b	ENSGT00940000182583	ENSGT00940000164012.A.j.d	ENSGT00940000164012.A.j.c.a.a.b	ENSGT00940000157242.a.a.e	ENSGT00390000018319.a.b.b.a	ENSGT00940000158431.a.a.a.a.b.b.b	ENSGT00390000018619	ENSGT00940000166272	ENSGT00940000164944	ENSGT00940000166263	ENSGT00940000157492.b #19	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #25	ENSGT00390000018086 #26	ENSGT00940000158144.a	ENSGT00940000166906	ENSGT00940000156102.q.a.b	ENSGT00940000156102.q.a.a	ENSGT00940000166544.b	ENSGT00940000155186	ENSGT00940000166014	ENSGT00940000165930.A	ENSGT00940000165930.B.j	ENSGT00940000165930.B.i	ENSGT00940000164012.C.i.a	ENSGT00940000164012.C.i.b.d
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	8	ENSGT00940000164012.A.i	ENSGT00940000164012.A.j.c.a.b	ENSGT00940000157242.a.a.f	ENSGT00940000164012.A.j.c.b	ENSGT00940000182583	ENSGT00940000164012.A.j.d	ENSGT00940000164012.A.j.c.a.a.b	ENSGT00940000157242.a.a.e	ENSGT00390000018319.a.b.b.a	ENSGT00940000158431.a.a.a.a.b.b.b	ENSGT00390000018619	ENSGT00940000166272	ENSGT00940000164944	ENSGT00940000166263	ENSGT00940000157492.b #19	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #25	ENSGT00390000018086 #26	ENSGT00940000158144.a	ENSGT00940000166906	ENSGT00940000156102.q.a.b	ENSGT00940000156102.q.a.a	ENSGT00940000166544.b	ENSGT00940000155186	ENSGT00940000166014	ENSGT00940000165930.A	ENSGT00940000165930.B.j	ENSGT00940000165930.B.i	ENSGT00940000164012.C.i.a	ENSGT00940000164012.C.i.b.d
Haplochromini	ANCESTRAL SPECIES	4	ENSGT00940000164012.A.j.c.a.b	ENSGT00940000157242.a.a.f	ENSGT00940000164012.A.j.c.b	ENSGT00940000182583	ENSGT00940000164012.A.j.d.a	ENSGT00940000164012.A.j.d.b	ENSGT00940000164012.A.j.c.a.a.b	ENSGT00940000157242.a.a.e	ENSGT00390000018319.a.b.b.a	ENSGT00940000158431.a.a.a.a.b.b.b	ENSGT00390000018619	ENSGT00940000166272	ENSGT00940000164944	ENSGT00940000166263	ENSGT00940000157492.b #19	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #25	ENSGT00390000018086 #26	ENSGT00940000158144.a	ENSGT00940000166906	ENSGT00940000156102.q.a.b	ENSGT00940000156102.q.a.a	ENSGT00940000166544.b	ENSGT00940000155186	ENSGT00940000166014	ENSGT00940000165930.A	ENSGT00940000165930.B.j	ENSGT00940000165930.B.i	ENSGT00940000164012.C.i.a	ENSGT00940000164012.C.i.b.d
Haplochromini_A	ANCESTRAL SPECIES	4	ENSGT00940000164012.A.i	ENSGT00940000164012.A.j.c.a.b	ENSGT00940000157242.a.a.f	ENSGT00940000164012.A.j.c.b	ENSGT00940000182583	ENSGT00940000164012.A.j.d.a	ENSGT00940000164012.A.j.c.a.a.b	ENSGT00940000157242.a.a.e	ENSGT00390000018319.a.b.b.a	ENSGT00940000158431.a.a.a.a.b.b.b	ENSGT00390000018619	ENSGT00940000166272	ENSGT00940000164944	ENSGT00940000166263	ENSGT00940000157492.b #19	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #25	ENSGT00390000018086 #26	ENSGT00940000158144.a	ENSGT00940000166906	ENSGT00940000156102.q.a.b	ENSGT00940000156102.q.a.a	ENSGT00940000166544.b	ENSGT00940000155186	ENSGT00940000166014	ENSGT00940000165930.A	ENSGT00940000165930.B.j	ENSGT00940000165930.B.i	ENSGT00940000164012.C.i.a	ENSGT00940000164012.C.i.b.d
Haplochromini_B	ANCESTRAL SPECIES	2	ENSGT00940000164012.A.j.c.a.b	ENSGT00940000165756.B.g.a.a.a.b.b.a	ENSGT00940000164012.A.j.c.a.a.a	ENSGT00940000157242.a.a.f	ENSGT00940000164012.A.j.c.b	ENSGT00940000164012.A.j.d.a	ENSGT00940000164012.A.j.c.a.a.b	ENSGT00940000157242.a.a.e	ENSGT00390000018319.a.b.b.a	ENSGT00940000158431.a.a.a.a.b.b.b	ENSGT00390000018619	ENSGT00940000166272	ENSGT00940000164944	ENSGT00940000166263	ENSGT00940000157492.b #19	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #25	ENSGT00390000018086 #26	ENSGT00940000158144.a	ENSGT00940000166906	ENSGT00940000156102.q.a.b	ENSGT00940000156102.q.a.a	ENSGT00940000166544.b	ENSGT00940000155186	ENSGT00940000166014	ENSGT00940000165930.A	ENSGT00940000165930.B.j	ENSGT00940000165930.B.i	ENSGT00940000164012.C.i.a	ENSGT00940000164012.C.i.b.d
Eastern happy	MODERN SPECIES	3	ENSACLG00000006316	ENSACLG00000006303	aqp3a (ENSACLG00000006288)	ENSACLG00000006251	ENSACLG00000006221	ENSACLG00000006216	ENSACLG00000006209	aqp3a (ENSACLG00000006193)	ENSACLG00000006184	ENSACLG00000006182	nol6 (ENSACLG00000006141)	wdr54 (ENSACLG00000006131)	rhobtb4 (ENSACLG00000006053)	ENSACLG00000005737	mef2cb (ENSACLG00000005626) #19	tmem161b (ENSACLG00000005596) #22	ccnh (ENSACLG00000005566) #23	RASA1 (ENSACLG00000005501) #25	ENSACLG00000005496	ENSACLG00000005490	ENSACLG00000005017	EDIL3 (ENSACLG00000005008)	hapln1a (ENSACLG00000004973)	ENSACLG00000004948	ENSACLG00000004939	ENSACLG00000004904	ENSACLG00000004901	tmem167a (ENSACLG00000004895)	ENSACLG00000004888	ENSACLG00000004880	zgc:110353 (ENSACLG00000004869)
Zebra mbuna	MODERN SPECIES	1094	ENSMZEG00005013941	ENSMZEG00005013956	ENSMZEG00005013969	ENSMZEG00005013975	ENSMZEG00005013993	aqp3a (ENSMZEG00005014023)	ENSMZEG00005014030	ENSMZEG00005014044	aqp3a (ENSMZEG00005014052)	nol6 (ENSMZEG00005014058)	ENSMZEG00005014079	wdr54 (ENSMZEG00005014089)	rhobtb4 (ENSMZEG00005014106)	ENSMZEG00005014149	mef2cb (ENSMZEG00005014179) #19	tmem161b (ENSMZEG00005014489) #22	ccnh (ENSMZEG00005014502) #23	RASA1 (ENSMZEG00005014524) #25	cox7c (ENSMZEG00005014575) #26	EDIL3 (ENSMZEG00005014589)	hapln1a (ENSMZEG00005014602)	ENSMZEG00005014607	ENSMZEG00005014615	ENSMZEG00005014624	tmem167a (ENSMZEG00005014638)	ENSMZEG00005014667	ENSMZEG00005014670	ENSMZEG00005014675	ENSMZEG00005014699	zgc:110626 (ENSMZEG00005014751)	ENSMZEG00005014783
P. nyererei	MODERN SPECIES	301	nr2f1a (ENSPNYG00000021013) #11	ENSPNYG00000021008	ENSPNYG00000020994	aqp3a (ENSPNYG00000020972)	ENSPNYG00000020946	ENSPNYG00000020935	ENSPNYG00000020922	ENSPNYG00000020908	aqp3a (ENSPNYG00000020898)	ENSPNYG00000020884	nol6 (ENSPNYG00000020726)	wdr54 (ENSPNYG00000020667)	rhobtb4 (ENSPNYG00000020621)	ENSPNYG00000020584	mef2cb (ENSPNYG00000020527) #19	tmem161b (ENSPNYG00000020473) #22	ccnh (ENSPNYG00000020440) #23	RASA1 (ENSPNYG00000020376) #25	cox7c (ENSPNYG00000020360) #26	EDIL3 (ENSPNYG00000020312)	hapln1a (ENSPNYG00000020301)	ENSPNYG00000020287	ENSPNYG00000020261	ENSPNYG00000020225	tmem167a (ENSPNYG00000020201)	ENSPNYG00000020193	ENSPNYG00000020182	zgc:110353 (ENSPNYG00000020171)	zgc:110626 (ENSPNYG00000020139)	ENSPNYG00000020101	ssbp2a (ENSPNYG00000020062)
Burton s mouthbrooder	MODERN SPECIES	321	nr2f1a (ENSHBUG00000010238) #11	ENSHBUG00000010221	ENSHBUG00000010210	ENSHBUG00000010204	aqp3a (ENSHBUG00000010175)	ENSHBUG00000010151	ENSHBUG00000010122	ENSHBUG00000010109	aqp3a (ENSHBUG00000010083)	nol6 (ENSHBUG00000010058)	ENSHBUG00000010025	wdr54 (ENSHBUG00000010004)	rhobtb4 (ENSHBUG00000009988)	ENSHBUG00000009961	mef2cb (ENSHBUG00000009943) #19	tmem161b (ENSHBUG00000009875) #22	ccnh (ENSHBUG00000009831) #23	RASA1 (ENSHBUG00000009789) #25	cox7c (ENSHBUG00000009664) #26	EDIL3 (ENSHBUG00000009646)	hapln1a (ENSHBUG00000009630)	ENSHBUG00000009620	ENSHBUG00000009595	ENSHBUG00000009573	tmem167a (ENSHBUG00000009520)	ENSHBUG00000009499	ENSHBUG00000009491	zgc:110353 (ENSHBUG00000009481)	ENSHBUG00000009460	ENSHBUG00000009436	ssbp2a (ENSHBUG00000009411)
Lyretail cichlid	MODERN SPECIES	296	KIAA0825 (ENSNBRG00000001036)	fam172a (ENSNBRG00000001093) #10	nr2f1a (ENSNBRG00000001121) #11	ENSNBRG00000001144	ENSNBRG00000001175	ENSNBRG00000001202	aqp3a (ENSNBRG00000001309)	ENSNBRG00000001338	aqp3a (ENSNBRG00000001362)	nol6 (ENSNBRG00000001435)	ENSNBRG00000001707	wdr54 (ENSNBRG00000001735)	rhobtb4 (ENSNBRG00000001822)	ENSNBRG00000001877	mef2cb (ENSNBRG00000001927) #19	tmem161b (ENSNBRG00000002015) #22	ccnh (ENSNBRG00000002050) #23	RASA1 (ENSNBRG00000002080) #25	cox7c (ENSNBRG00000002151) #26	EDIL3 (ENSNBRG00000002173)	hapln1a (ENSNBRG00000002240)	ENSNBRG00000002283	ENSNBRG00000002303	ENSNBRG00000002324	tmem167a (ENSNBRG00000002358)	ENSNBRG00000002393	ENSNBRG00000002394	zgc:110353 (ENSNBRG00000002407)	ENSNBRG00000002430	ENSNBRG00000002459	ENSNBRG00000002487
Nile tilapia	MODERN SPECIES	3	ENSONIG00000040551	AQP3 (ENSONIG00000029850)	ENSONIG00000037418	ENSONIG00000038505	ENSONIG00000015967	ENSONIG00000032994	ENSONIG00000015961	aqp3a (ENSONIG00000015957)	nol6 (ENSONIG00000015951)	ENSONIG00000037922	ENSONIG00000015956	wdr54 (ENSONIG00000015949)	rhobtb4 (ENSONIG00000015947)	ENSONIG00000015944	mef2cb (ENSONIG00000015941) #19	tmem161b (ENSONIG00000015938) #22	ccnh (ENSONIG00000015937) #23	RASA1 (ENSONIG00000015926) #25	cox7c (ENSONIG00000034802) #26	ENSONIG00000027791	EDIL3 (ENSONIG00000015924)	hapln1a (ENSONIG00000015922)	ENSONIG00000015920	ENSONIG00000015918	tmem167a (ENSONIG00000028217)	ENSONIG00000028822	ENSONIG00000035172	ENSONIG00000015915	ENSONIG00000041466	ENSONIG00000028275	ENSONIG00000031589
Midas cichlid	MODERN SPECIES	234									ENSACIG00000018917	nol6 (ENSACIG00000018888)	ENSACIG00000018875	wdr54 (ENSACIG00000018853)	rhobtb4 (ENSACIG00000018833)	ENSACIG00000018818	mef2cb (ENSACIG00000018803) #19	tmem161b (ENSACIG00000018779) #22	ccnh (ENSACIG00000018761) #23	RASA1 (ENSACIG00000018726) #25	cox7c (ENSACIG00000018713) #26
Pinecone sodierfish	MODERN SPECIES	23	ENSMMDG00005011816	ENSMMDG00005011820	fam172a (ENSMMDG00005011828) #10	nr2f1a (ENSMMDG00005012017) #11	ENSMMDG00005012114	ENSMMDG00005012119	ENSMMDG00005012122	aqp3a (ENSMMDG00005012124)	nol6 (ENSMMDG00005012197)	ENSMMDG00005014428	ENSMMDG00005014432	wdr54 (ENSMMDG00005014433)	rhobtb4 (ENSMMDG00005014439)	ENSMMDG00005014441	mef2cb (ENSMMDG00005014452) #19	tmem161b (ENSMMDG00005014478) #22	ccnh (ENSMMDG00005014495) #23	RASA1 (ENSMMDG00005014548) #25	cox7c (ENSMMDG00005017412) #26	EDIL3 (ENSMMDG00005017415)	hapln1a (ENSMMDG00005017418)	ENSMMDG00005017437	ENSMMDG00005017438	tmem167a (ENSMMDG00005017440)	ENSMMDG00005017441	ENSMMDG00005017442	ENSMMDG00005017444	zgc:110626 (ENSMMDG00005017445)	ENSMMDG00005017447	f2r (ENSMMDG00005017448)	iqgap2 (ENSMMDG00005017661)
Cod	MODERN SPECIES	19	fam172a (ENSGMOG00000000798) #10	nr2f1a (ENSGMOG00000000791) #11	ENSGMOG00000023106	ENSGMOG00000000754	ENSGMOG00000035313	ENSGMOG00000000709	ENSGMOG00000026740	ENSGMOG00000000677	ENSGMOG00000036236	ENSGMOG00000000637	wdr54 (ENSGMOG00000000619)	ENSGMOG00000029502	ENSGMOG00000000605	ENSGMOG00000033093	mef2cb (ENSGMOG00000000565) #19	tmem161b (ENSGMOG00000000557) #22	ccnh (ENSGMOG00000000542) #23	RASA1 (ENSGMOG00000000513) #25	COX7C (ENSGMOG00000000506) #26	ENSGMOG00000031424	ENSGMOG00000022366	EDIL3 (ENSGMOG00000018919)	ENSGMOG00000011145	ENSGMOG00000028069	ENSGMOG00000016422	ENSGMOG00000027751	TMEM167A (ENSGMOG00000033366)	ENSGMOG00000011069	ENSGMOG00000011055	ENSGMOG00000026305	ENSGMOG00000036026
Spotted gar	MODERN SPECIES	658	IDNK (ENSLOCG00000002152)	FRMD3 (ENSLOCG00000002132)	ENSLOCG00000002123	RASEF (ENSLOCG00000002094)	ENSLOCG00000002081	atg10 (ENSLOCG00000002071)	ENSLOCG00000002054	tmem167a (ENSLOCG00000002040)	xrcc4 (ENSLOCG00000002026)	ENSLOCG00000002002	HAPLN1 (ENSLOCG00000001981)	EDIL3 (ENSLOCG00000001965)	cox7c (ENSLOCG00000001956) #26	RASA1 (ENSLOCG00000001929) #25	ccnh (ENSLOCG00000001902) #23	tmem161b (ENSLOCG00000001873) #22	mef2cb (ENSLOCG00000001833) #19	cetn3 (ENSLOCG00000001819) #18	mblac2 (ENSLOCG00000001811) #17	ENSLOCG00000001795	lysmd3 (ENSLOCG00000001782) #15	adgrv1 (ENSLOCG00000001716) #14	arrdc3a (ENSLOCG00000001698) #13	ENSLOCG00000001680 #13	nr2f1a (ENSLOCG00000001663) #11	fam172a (ENSLOCG00000001629) #10	KIAA0825 (ENSLOCG00000001617)	ENSLOCG00000001601	MCTP1 (ENSLOCG00000001557)	FAM81B (ENSLOCG00000001543)	SKIC3 (ENSLOCG00000001504)
Reedfish	MODERN SPECIES	15	FAM81B (ENSECRG00000008032)	zgc:194908 (ENSECRG00000008027)	MCTP1 (ENSECRG00000007918)	SLF1 (ENSECRG00000007823)	KIAA0825 (ENSECRG00000007788)	ENSECRG00000007770 #10	nr2f1a (ENSECRG00000007759) #11	arrdc3a (ENSECRG00000007737) #13	adgrv1 (ENSECRG00000007415) #14	lysmd3 (ENSECRG00000007223) #15	ENSECRG00000007217	mblac2 (ENSECRG00000007206) #17	cetn3 (ENSECRG00000007191) #18	mef2cb (ENSECRG00000007156) #19	ENSECRG00000007132	tmem161b (ENSECRG00000007114) #22	ccnh (ENSECRG00000007084) #23	RASA1 (ENSECRG00000007053) #25	cox7c (ENSECRG00000007032) #26	EDIL3 (ENSECRG00000007012)	HAPLN1 (ENSECRG00000006997)	ENSECRG00000006901	xrcc4 (ENSECRG00000006852)	ENSECRG00000006832	atg10 (ENSECRG00000006810)	ENSECRG00000006780	ACOT12 (ENSECRG00000006759)	zcchc9 (ENSECRG00000006748)	ckmt2a (ENSECRG00000006733)	rasgrf2b (ENSECRG00000006694)	msh3 (ENSECRG00000006670)
Elephant shark	MODERN SPECIES	1558																tmem161b (ENSCMIG00000007646) #22	ccnh (ENSCMIG00000007737) #23	RASA1 (ENSCMIG00000007837) #25	cox7c (ENSCMIG00000008038) #26	EDIL3 (ENSCMIG00000008045)	HAPLN1 (ENSCMIG00000008051)	ENSCMIG00000008055	XRCC4 (ENSCMIG00000008062)	ENSCMIG00000008064	tmem167a (ENSCMIG00000008065)	zcchc9 (ENSCMIG00000008066)	SSBP2 (ENSCMIG00000008068)	ENSCMIG00000008070	ENSCMIG00000008078	ENSCMIG00000008086	rasgrf2b (ENSCMIG00000008165)
Vertebrata	ANCESTRAL SPECIES																	ENSGT00390000000672.a.a ##22
Cyclostomata	ANCESTRAL SPECIES																	ENSGT00390000000672.a.a ##22
Lamprey	MODERN SPECIES	6081																tmem161a (ENSPMAG00000001539) ##22	ENSPMAG00000001546
Hagfish	MODERN SPECIES	410																ENSEBUG00000016630 ##22	ENSEBUG00000005626	cops2 (ENSEBUG00000004492)	ENSEBUG00000008208	RASA1 (ENSEBUG00000010178) #25	rab8a (ENSEBUG00000012315)	ENSEBUG00000016382	ENSEBUG00000007448	ENSEBUG00000015380	ENSEBUG00000007539	ENSEBUG00000003941	ano5b (ENSEBUG00000005484)	kras (ENSEBUG00000015012)	ENSEBUG00000001234	ENSEBUG00000008429	ENSEBUG00000000980
Gnathostomata	ANCESTRAL SPECIES	441														ENSGT00390000014856	ENSGT00940000160699	ENSGT00390000000672.a.a ##22	ENSGT00940000158163	ENSGT00390000002913	ENSGT00940000160464	ENSGT00390000004097.a	ENSGT00390000012198
Euteleostomi	ANCESTRAL SPECIES	334							ENSGT00410000025695.a	ENSGT00390000012913.a	ENSGT00940000160926	ENSGT00940000158649	ENSGT00390000017748	ENSGT00940000160753	ENSGT00390000014856	ENSGT00940000165199	ENSGT00940000160699	ENSGT00390000000672.a.a ##22	ENSGT00940000158163	ENSGT00390000002913
Sarcopterygii	ANCESTRAL SPECIES	22	ENSGT00390000007227.b	ENSGT00390000000719	ENSGT00940000160464	ENSGT00390000004097.a	ENSGT01060000249150	ENSGT00390000012198	ENSGT00410000025695.a	ENSGT00390000012913.a	ENSGT00940000160926	ENSGT00940000158649	ENSGT00390000017748	ENSGT00940000160753	ENSGT00390000014856	ENSGT00940000165199	ENSGT00940000160699	ENSGT00390000000672.a.a ##22	ENSGT00940000158163	ENSGT00390000002913	ENSGT00410000025695.b	ENSGT00940000167763	ENSGT00940000158081
Tetrapoda	ANCESTRAL SPECIES	50	ENSGT00390000007227.b	ENSGT00390000000719	ENSGT00940000160464	ENSGT00390000004097.a	ENSGT01060000249150	ENSGT00390000012198	ENSGT00410000025695.a	ENSGT00390000012913.a	ENSGT00940000160926	ENSGT00940000158649	ENSGT00390000017748	ENSGT00940000160753	ENSGT00390000014856	ENSGT00940000165199	ENSGT00940000160699	ENSGT00390000000672.a.a ##22	ENSGT00940000158163	ENSGT00390000002913	ENSGT00410000025695.b	ENSGT00940000167763	ENSGT00940000158081	ENSGT00730000111231	ENSGT00390000003478	ENSGT01030000234515.b	ENSGT00940000164416
Amniota	ANCESTRAL SPECIES	23	ENSGT00960000189525	ENSGT00390000000719	ENSGT00940000160464	ENSGT00390000004097.a	ENSGT01060000249150	ENSGT00390000012198	ENSGT00410000025695.a	ENSGT00390000012913.a	ENSGT00940000160926	ENSGT00940000158649	ENSGT00390000017748	ENSGT00940000160753	ENSGT00390000014856	ENSGT00940000165199	ENSGT00940000160699	ENSGT00390000000672.a.a ##22	ENSGT00940000158163	ENSGT00390000002913	ENSGT00410000025695.b	ENSGT00940000167763	ENSGT00940000158081	ENSGT00730000111231	ENSGT00390000003478	ENSGT01030000234515.b	ENSGT00940000157413	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00940000166035	ENSGT00940000153593.c.a
Sauria	ANCESTRAL SPECIES	20	ENSGT00390000007227.b	ENSGT00960000189525	ENSGT00390000000719	ENSGT00390000004097.a	ENSGT01060000249150	ENSGT00390000012198	ENSGT00410000025695.a	ENSGT00390000012913.a	ENSGT00940000160926	ENSGT00940000158649	ENSGT00390000017748	ENSGT00940000160753	ENSGT00390000014856	ENSGT00940000165199	ENSGT00940000160699	ENSGT00390000000672.a.a ##22	ENSGT00940000158163	ENSGT00390000002913	ENSGT00410000025695.b	ENSGT00940000167763	ENSGT00940000158081	ENSGT00730000111231	ENSGT00390000003478	ENSGT01030000234515.b	ENSGT00940000164416	ENSGT00940000157413	ENSGT00940000155227	ENSGT00390000010652.D.b	ENSGT00940000159238.b	ENSGT00390000008279.b	ENSGT00940000156569.a.b
Lepidosauria	ANCESTRAL SPECIES	35	ENSGT00390000006166	ENSGT00390000008152.B.a	ENSGT00390000007227.b	ENSGT00390000000719	ENSGT00390000004097.a	ENSGT00390000012198	ENSGT00410000025695.a	ENSGT00390000012913.a	ENSGT00940000160926	ENSGT00940000158649	ENSGT00390000017748	ENSGT00940000160753	ENSGT00390000014856	ENSGT00940000165199	ENSGT00940000160699	ENSGT00390000000672.a.a ##22	ENSGT00940000158163	ENSGT00390000002913	ENSGT00410000025695.b	ENSGT00940000158081.m.b	ENSGT00940000167763	ENSGT00940000158081.m.a	ENSGT00730000111231	ENSGT00390000003478	ENSGT01030000234515.b	ENSGT00940000164416	ENSGT00940000157413	ENSGT00940000155227	ENSGT00390000010652.D.b	ENSGT00940000159238.b.d.a	ENSGT00390000008279.b
Episquamata	ANCESTRAL SPECIES	18	ENSGT00390000000289	ENSGT00940000161021	ENSGT00390000013329	ENSGT00390000000719	ENSGT00390000004097.a	ENSGT00390000012198	ENSGT00410000025695.a	ENSGT00390000012913.a	ENSGT00940000160926	ENSGT00940000158649	ENSGT00390000017748	ENSGT00940000160753	ENSGT00390000014856	ENSGT00940000165199	ENSGT00940000160699	ENSGT00390000000672.a.a ##22	ENSGT00940000158163	ENSGT00390000002913	ENSGT00410000025695.b	ENSGT00940000167763	ENSGT00940000158081.m.a	ENSGT00730000111231	ENSGT00390000003478	ENSGT01030000234515.b	ENSGT00940000164416	ENSGT00940000157413	ENSGT00940000155227	ENSGT00390000010652.D.b	ENSGT00940000159238.b.d.a	ENSGT00390000008279.b	ENSGT00940000156569.a.b
Laterata	ANCESTRAL SPECIES	37	ENSGT00390000000289	ENSGT00940000161021	ENSGT00390000013329	ENSGT00390000000719	ENSGT00390000004097.a	ENSGT00390000012198	ENSGT00410000025695.a	ENSGT00390000012913.a	ENSGT00940000160926	ENSGT00940000158649	ENSGT00390000017748	ENSGT00940000160753	ENSGT00390000014856	ENSGT00940000165199	ENSGT00940000160699	ENSGT00390000000672.a.a ##22	ENSGT00940000158163	ENSGT00390000002913	ENSGT00410000025695.b	ENSGT00940000167763	ENSGT00940000158081.m.a	ENSGT00730000111231	ENSGT00390000003478	ENSGT01030000234515.b	ENSGT00940000164416	ENSGT00940000157413
Common wall lizard	MODERN SPECIES	9	WDR18 (ENSPMRG00000020734)	GRIN3B (ENSPMRG00000020765)	TMEM259 (ENSPMRG00000020879)	NDUFA13 (ENSPMRG00000020953)	GATAD2A (ENSPMRG00000020959)	MAU2 (ENSPMRG00000021003)	SUGP1 (ENSPMRG00000021319)	TM6SF2 (ENSPMRG00000021377)	HAPLN4 (ENSPMRG00000021383)	NCAN (ENSPMRG00000021434)	NR2C2AP (ENSPMRG00000021664)	RFXANK (ENSPMRG00000021677)	ENSPMRG00000021683	ENSPMRG00000021689	MEF2B (ENSPMRG00000021693)	TMEM161A (ENSPMRG00000021702) ##22	SLC25A42 (ENSPMRG00000021711)	ENSPMRG00000021717	ENSPMRG00000021724	ENSPMRG00000021726	ENSPMRG00000021729	ENSPMRG00000021733	SUGP2 (ENSPMRG00000021741)	ENSPMRG00000021750	HOMER3 (ENSPMRG00000021766)	DDX49 (ENSPMRG00000021780)	COPE (ENSPMRG00000021792)	ENSPMRG00000021803	CERS1 (ENSPMRG00000021809)	ENSPMRG00000021814	UPF1 (ENSPMRG00000021822)
Argentine black and white tegu	MODERN SPECIES	106	WDR18 (ENSSMRG00000000620)	GRIN3B (ENSSMRG00000000601)	TMEM259 (ENSSMRG00000000592)	NDUFA13 (ENSSMRG00000000580)	GATAD2A (ENSSMRG00000000536)	MAU2 (ENSSMRG00000000406)	SUGP1 (ENSSMRG00000000352)	TM6SF2 (ENSSMRG00000000324)	HAPLN4 (ENSSMRG00000000158)	NCAN (ENSSMRG00000000110)	NR2C2AP (ENSSMRG00000000094)	RFXANK (ENSSMRG00000000051)	BORCS8 (ENSSMRG00000000033)	ENSSMRG00000022975	MEF2B (ENSSMRG00000022974)	TMEM161A (ENSSMRG00000022973) ##22	SLC25A42 (ENSSMRG00000022972)	ARMC6 (ENSSMRG00000022971)	SUGP2 (ENSSMRG00000022970)	ENSSMRG00000022969	HOMER3 (ENSSMRG00000022968)	DDX49 (ENSSMRG00000022967)	COPE (ENSSMRG00000022966)	CERS1 (ENSSMRG00000022965)	ENSSMRG00000022964	UPF1 (ENSSMRG00000022963)	GTPBP3 (ENSSMRG00000022962)	ANO8 (ENSSMRG00000022961)	DDA1 (ENSSMRG00000022960)	ELL (ENSSMRG00000022959)	ISYNA1 (ENSSMRG00000022958)
Toxicofera	ANCESTRAL SPECIES	31	ENSGT00390000000289	ENSGT00940000161021	ENSGT00390000013329	ENSGT00390000000719	ENSGT00390000004097.a	ENSGT00390000012198	ENSGT00410000025695.a	ENSGT00390000012913.a	ENSGT00940000160926	ENSGT00940000158649	ENSGT00390000017748	ENSGT00940000160753	ENSGT00390000014856	ENSGT00940000165199	ENSGT00940000160699	ENSGT00390000000672.a.a ##22	ENSGT00940000158163	ENSGT00390000002913	ENSGT00410000025695.b	ENSGT00940000167763	ENSGT00940000158081.m.a	ENSGT00730000111231	ENSGT00390000003478	ENSGT01030000234515.b	ENSGT00940000164416	ENSGT00940000157413
Elapidae	ANCESTRAL SPECIES	3	ENSGT00390000000289	ENSGT00940000161021	ENSGT00390000013329	ENSGT00390000000719.d	ENSGT00390000004097.a	ENSGT00390000012198	ENSGT00410000025695.a	ENSGT00390000012913.a	ENSGT00940000160926	ENSGT00940000158649	ENSGT00390000017748	ENSGT00940000160753	ENSGT00390000014856	ENSGT00940000165199	ENSGT00940000160699	ENSGT00390000000672.a.a ##22	ENSGT00940000158163	ENSGT00390000002913	ENSGT00410000025695.b	ENSGT00940000167763	ENSGT00940000158081.m.a	ENSGT00730000111231.i.a	ENSGT00390000003478	ENSGT01030000234515.b	ENSGT00940000164416	ENSGT00940000157413
Elapidae_a	ANCESTRAL SPECIES	10	ENSGT00940000161021	ENSGT00390000013329	ENSGT00390000000719.d	ENSGT00390000004097.a	ENSGT00390000012198	ENSGT00410000025695.a	ENSGT00390000012913.a	ENSGT00940000160926	ENSGT00940000158649	ENSGT00390000017748	ENSGT00940000160753	ENSGT00390000014856	ENSGT00950000185950	ENSGT00940000165199	ENSGT00940000160699	ENSGT00390000000672.a.a ##22	ENSGT00940000158163	ENSGT00390000002913	ENSGT00410000025695.b	ENSGT00940000167763	ENSGT00940000158081.m.a	ENSGT00730000111231.i.a	ENSGT00390000003478	ENSGT01030000234515.b	ENSGT00940000164416	ENSGT00940000157413
Acanthophiinae	ANCESTRAL SPECIES	13	ENSGT00390000000289	ENSGT00940000161021	ENSGT00390000013329	ENSGT00390000000719.d	ENSGT00390000004097.a	ENSGT00390000012198	ENSGT00410000025695.a	ENSGT00390000012913.a	ENSGT00940000160926	ENSGT00940000158649	ENSGT00390000017748	ENSGT00940000160753	ENSGT00390000014856	ENSGT00940000165199	ENSGT00940000160699	ENSGT00390000000672.a.a ##22	ENSGT00940000158163	ENSGT00390000002913	ENSGT00410000025695.b	ENSGT00940000167763	ENSGT00940000158081.m.a	ENSGT00730000111231.i.a	ENSGT00390000003478	ENSGT01030000234515.b	ENSGT00940000164416	ENSGT00940000157413
Eastern brown snake	MODERN SPECIES	10	GRIN3B (ENSPTXG00000002248)	TMEM259 (ENSPTXG00000002329)	ENSPTXG00000002332	GATAD2A (ENSPTXG00000002333)	MAU2 (ENSPTXG00000002334)	SUGP1 (ENSPTXG00000002335)	TM6SF2 (ENSPTXG00000002337)	ENSPTXG00000002338	ENSPTXG00000002340	ENSPTXG00000002343	NR2C2AP (ENSPTXG00000002344)	RFXANK (ENSPTXG00000002349)	BORCS8 (ENSPTXG00000002351)	ENSPTXG00000002354	MEF2B (ENSPTXG00000002356)	TMEM161A (ENSPTXG00000002360) ##22	SLC25A42 (ENSPTXG00000002364)	ARMC6 (ENSPTXG00000002367)	SUGP2 (ENSPTXG00000002368)	ENSPTXG00000002371	ENSPTXG00000002373	ENSPTXG00000002375	DDX49 (ENSPTXG00000002377)	COPE (ENSPTXG00000002378)	CERS1 (ENSPTXG00000002381)	ENSPTXG00000002384	UPF1 (ENSPTXG00000002385)	THBS4 (ENSPTXG00000002388)	CRTC1 (ENSPTXG00000002389)	KLHL26 (ENSPTXG00000002391)	TMEM59L (ENSPTXG00000002392)
Mainland tiger snake	MODERN SPECIES	191	GRIN3B (ENSNSUG00000017267)	TMEM259 (ENSNSUG00000017266)	ENSNSUG00000017264	GATAD2A (ENSNSUG00000017263)	MAU2 (ENSNSUG00000017183)	SUGP1 (ENSNSUG00000017182)	TM6SF2 (ENSNSUG00000017181)	HAPLN4 (ENSNSUG00000017180)	ENSNSUG00000017179	ENSNSUG00000017178	NR2C2AP (ENSNSUG00000017177)	RFXANK (ENSNSUG00000017158)	BORCS8 (ENSNSUG00000017157)	ENSNSUG00000017155	ENSNSUG00000017154	TMEM161A (ENSNSUG00000017150) ##22	SLC25A42 (ENSNSUG00000017149)	ARMC6 (ENSNSUG00000017148)	SUGP2 (ENSNSUG00000017147)	ENSNSUG00000017139	HOMER3 (ENSNSUG00000017134)
Blue-lipped sea krait	MODERN SPECIES	8462																TMEM161A (ENSLLTG00000007140) ##22	SLC25A42 (ENSLLTG00000007114)
Indian cobra	MODERN SPECIES		WDR18 (ENSNNAG00000001289)	GRIN3B (ENSNNAG00000001337)	TMEM259 (ENSNNAG00000001408)	NDUFA13 (ENSNNAG00000001445)	GATAD2A (ENSNNAG00000001467)	MAU2 (ENSNNAG00000001497)	SUGP1 (ENSNNAG00000001518)	TM6SF2 (ENSNNAG00000001539)	ENSNNAG00000001558	HAPLN4 (ENSNNAG00000001578)	NCAN (ENSNNAG00000001611)	NR2C2AP (ENSNNAG00000001682)	RFXANK (ENSNNAG00000001702)	BORCS8 (ENSNNAG00000001727)	ENSNNAG00000001734	TMEM161A (ENSNNAG00000001750) ##22	SLC25A42 (ENSNNAG00000001764)	ARMC6 (ENSNNAG00000001775)	SUGP2 (ENSNNAG00000001797)	ENSNNAG00000001830	HOMER3 (ENSNNAG00000001848)	DDX49 (ENSNNAG00000001874)	COPE (ENSNNAG00000001905)	CERS1 (ENSNNAG00000001921)	ENSNNAG00000001932	UPF1 (ENSNNAG00000001946)	ENSNNAG00000001970	CRTC1 (ENSNNAG00000001982)	ENSNNAG00000001994	ENSNNAG00000001998	ENSNNAG00000002004
tuatara	MODERN SPECIES	1387	GTPBP3 (ENSSPUG00000007326)	ENSSPUG00000007338	YJEFN3 (ENSSPUG00000007394)	NDUFA13 (ENSSPUG00000007419)	GATAD2A (ENSSPUG00000007455)	MAU2 (ENSSPUG00000007521)	SUGP1 (ENSSPUG00000007840)	TM6SF2 (ENSSPUG00000007875)	HAPLN4 (ENSSPUG00000007909)	NCAN (ENSSPUG00000007934)	NR2C2AP (ENSSPUG00000007984)	RFXANK (ENSSPUG00000007991)	BORCS8 (ENSSPUG00000008006)	ENSSPUG00000008012	ENSSPUG00000008020	TMEM161A (ENSSPUG00000008031) ##22	SLC25A42 (ENSSPUG00000008044)
Archelosauria	ANCESTRAL SPECIES	20	ENSGT00390000007227.b	ENSGT00960000189525	ENSGT00390000000719	ENSGT00390000004097.a	ENSGT01060000249150	ENSGT00390000012198	ENSGT00410000025695.a	ENSGT00390000012913.a	ENSGT00940000160926	ENSGT00940000158649	ENSGT00390000017748	ENSGT00940000160753	ENSGT00390000014856	ENSGT00940000165199	ENSGT00940000160699	ENSGT00390000000672.a.a ##22	ENSGT00940000158163	ENSGT00390000002913	ENSGT00410000025695.b	ENSGT00940000167763	ENSGT00940000158081	ENSGT00730000111231	ENSGT00390000003478	ENSGT01030000234515.b	ENSGT00940000164416	ENSGT00940000157413	ENSGT00940000155227	ENSGT00390000010652.D.b	ENSGT00940000159238.b	ENSGT00390000008279.b	ENSGT00940000156569.a.b
Cryptodira	ANCESTRAL SPECIES	19	ENSGT00390000008152.B.a	ENSGT00390000007227.b	ENSGT00960000189525	ENSGT00390000000719	ENSGT00390000004097.a	ENSGT00390000012198	ENSGT00410000025695.a	ENSGT00390000012913.a	ENSGT00940000160926	ENSGT00940000158649	ENSGT00390000017748	ENSGT00940000160753	ENSGT00390000014856	ENSGT00940000165199	ENSGT00940000160699	ENSGT00390000000672.a.a ##22	ENSGT00940000158163	ENSGT00390000002913	ENSGT00410000025695.b	ENSGT00940000167763	ENSGT00940000158081	ENSGT00730000111231	ENSGT00390000003478	ENSGT01030000234515.b	ENSGT00940000164416	ENSGT00940000157413	ENSGT00940000155227	ENSGT00390000010652.D.b	ENSGT00940000159238.b	ENSGT00390000008279.b	ENSGT00940000156569.a.b
Testudinoidea	ANCESTRAL SPECIES	18	ENSGT00390000008152.B.a	ENSGT00390000007227.b	ENSGT00960000189525	ENSGT00390000000719	ENSGT00390000004097.a	ENSGT00390000012198	ENSGT00410000025695.a	ENSGT00390000012913.a	ENSGT00940000160926	ENSGT00940000158649	ENSGT00390000017748	ENSGT00940000160753	ENSGT00390000014856	ENSGT00940000165199	ENSGT00940000160699	ENSGT00390000000672.a.a ##22	ENSGT00940000158163	ENSGT00390000002913	ENSGT00410000025695.b	ENSGT00940000167763	ENSGT00940000158081	ENSGT00730000111231	ENSGT00390000003478	ENSGT01030000234515.b	ENSGT00940000164416	ENSGT00940000157413	ENSGT00940000155227	ENSGT00390000010652.D.b	ENSGT00940000159238.b	ENSGT00390000008279.b	ENSGT00940000156569.a.b
Emydidae	ANCESTRAL SPECIES	14	ENSGT00390000006166	ENSGT00390000008152.B.a	ENSGT00390000007227.b	ENSGT00390000000719	ENSGT00390000004097.a	ENSGT00390000012198	ENSGT00410000025695.a	ENSGT00390000012913.a	ENSGT00940000160926	ENSGT00940000158649	ENSGT00390000017748	ENSGT00940000160753	ENSGT00390000014856	ENSGT00940000165199	ENSGT00940000160699	ENSGT00390000000672.a.a ##22	ENSGT00940000158163	ENSGT00390000002913	ENSGT00410000025695.b	ENSGT00940000167763	ENSGT00940000158081	ENSGT00730000111231	ENSGT00390000003478	ENSGT01030000234515.b	ENSGT00940000164416	ENSGT00940000157413	ENSGT00940000155227	ENSGT00390000010652.D.b	ENSGT00940000159238.b	ENSGT00390000008279.b	ENSGT00940000156569.a.b
Three-toed box turtle	MODERN SPECIES	92	ENSTMTG00000003038	CILP2 (ENSTMTG00000003015)	YJEFN3 (ENSTMTG00000013384)	NDUFA13 (ENSTMTG00000013371)	GATAD2A (ENSTMTG00000013318)	MAU2 (ENSTMTG00000013280)	SUGP1 (ENSTMTG00000013266)	TM6SF2 (ENSTMTG00000013253)	HAPLN4 (ENSTMTG00000013225)	NCAN (ENSTMTG00000013156)	NR2C2AP (ENSTMTG00000013134)	RFXANK (ENSTMTG00000013105)	BORCS8 (ENSTMTG00000013093)	ENSTMTG00000013028	MEF2B (ENSTMTG00000013005)	TMEM161A (ENSTMTG00000012984) ##22	SLC25A42 (ENSTMTG00000012962)	ARMC6 (ENSTMTG00000012947)	SUGP2 (ENSTMTG00000012920)	ENSTMTG00000012889	HOMER3 (ENSTMTG00000012853)	DDX49 (ENSTMTG00000012790)	COPE (ENSTMTG00000012775)	CERS1 (ENSTMTG00000012752)	ENSTMTG00000012739	UPF1 (ENSTMTG00000012695)	ENSTMTG00000012670	CRTC1 (ENSTMTG00000012645)	KLHL26 (ENSTMTG00000012633)	TMEM59L (ENSTMTG00000012614)	CRLF1 (ENSTMTG00000012585)
painted turtle	MODERN SPECIES	771	GTPBP3 (ENSCPBG00000012434)	ENSCPBG00000012437	CILP2 (ENSCPBG00000012445)	YJEFN3 (ENSCPBG00000012447)	GATAD2A (ENSCPBG00000012450)	MAU2 (ENSCPBG00000012453)	SUGP1 (ENSCPBG00000012455)	TM6SF2 (ENSCPBG00000012458)	HAPLN4 (ENSCPBG00000012460)	NCAN (ENSCPBG00000012461)	NR2C2AP (ENSCPBG00000012463)	RFXANK (ENSCPBG00000012464)	BORCS8 (ENSCPBG00000012467)	ENSCPBG00000012469	MEF2B (ENSCPBG00000012471)	TMEM161A (ENSCPBG00000012479) ##22	SLC25A42 (ENSCPBG00000012483)	ARMC6 (ENSCPBG00000012485)	SUGP2 (ENSCPBG00000012487)	ENSCPBG00000012490	HOMER3 (ENSCPBG00000012496)	DDX49 (ENSCPBG00000012500)	COPE (ENSCPBG00000012504)	CERS1 (ENSCPBG00000012508)	ENSCPBG00000012510	UPF1 (ENSCPBG00000012513)	THBS4 (ENSCPBG00000012536)	CRTC1 (ENSCPBG00000012907)	KLHL26 (ENSCPBG00000012909)	TMEM59L (ENSCPBG00000012910)	CRLF1 (ENSCPBG00000012911)
Testudinidae	ANCESTRAL SPECIES	20	ENSGT00390000007227.b	ENSGT00390000000719.a	ENSGT00960000189525	ENSGT00390000000719.b	ENSGT00390000004097.a	ENSGT00390000012198	ENSGT00410000025695.a	ENSGT00390000012913.a	ENSGT00940000160926	ENSGT00940000158649	ENSGT00390000017748	ENSGT00940000160753	ENSGT00390000014856	ENSGT00940000165199	ENSGT00940000160699	ENSGT00390000000672.a.a ##22	ENSGT00940000158163	ENSGT00390000002913	ENSGT00410000025695.b	ENSGT00940000167763	ENSGT00940000158081	ENSGT00730000111231	ENSGT00390000003478	ENSGT01030000234515.b	ENSGT00940000164416	ENSGT00940000157413	ENSGT00940000155227	ENSGT00390000010652.D.b	ENSGT00940000159238.b	ENSGT00390000008279.b	ENSGT00940000156569.a.b
Abingdon island giant tortoise	MODERN SPECIES		CILP2 (ENSCABG00000004232)	YJEFN3 (ENSCABG00000004238)	ENSCABG00000004241	ENSCABG00000004244	GATAD2A (ENSCABG00000004245)	MAU2 (ENSCABG00000004254)	SUGP1 (ENSCABG00000004858)	TM6SF2 (ENSCABG00000004866)	HAPLN4 (ENSCABG00000004875)	NCAN (ENSCABG00000004882)	NR2C2AP (ENSCABG00000004889)	RFXANK (ENSCABG00000004891)	BORCS8 (ENSCABG00000004894)	ENSCABG00000004899	MEF2B (ENSCABG00000004901)	TMEM161A (ENSCABG00000004904) ##22	SLC25A42 (ENSCABG00000004955)	FLRT2 (ENSCABG00000004957)
Goode s thornscrub tortoise	MODERN SPECIES	14	GTPBP3 (ENSGEVG00005006249)	CILP2 (ENSGEVG00005006211)	YJEFN3 (ENSGEVG00005006180)	NDUFA13 (ENSGEVG00005006122)	GATAD2A (ENSGEVG00005006074)	MAU2 (ENSGEVG00005005539)	SUGP1 (ENSGEVG00005005333)	TM6SF2 (ENSGEVG00005005276)	HAPLN4 (ENSGEVG00005005235)	NCAN (ENSGEVG00005005147)	NR2C2AP (ENSGEVG00005005076)	RFXANK (ENSGEVG00005005039)	BORCS8 (ENSGEVG00005005013)	ENSGEVG00005004987	MEF2B (ENSGEVG00005004959)	TMEM161A (ENSGEVG00005004899) ##22	SLC25A42 (ENSGEVG00005004855)	ARMC6 (ENSGEVG00005004824)	SUGP2 (ENSGEVG00005004782)	ENSGEVG00005004681	HOMER3 (ENSGEVG00005004624)	DDX49 (ENSGEVG00005004539)	COPE (ENSGEVG00005004472)	CERS1 (ENSGEVG00005004366)	ENSGEVG00005004318	UPF1 (ENSGEVG00005019427)	THBS4 (ENSGEVG00005019413)	CRTC1 (ENSGEVG00005019397)	KLHL26 (ENSGEVG00005019386)	TMEM59L (ENSGEVG00005019360)	CRLF1 (ENSGEVG00005019342)
Chinese turtle	MODERN SPECIES	1790	GTPBP3 (ENSPSIG00000015510)	CILP2 (ENSPSIG00000015529)	YJEFN3 (ENSPSIG00000015540)	NDUFA13 (ENSPSIG00000015655)	GATAD2A (ENSPSIG00000015717)	MAU2 (ENSPSIG00000016573)	SUGP1 (ENSPSIG00000016889)	TM6SF2 (ENSPSIG00000017375)	HAPLN4 (ENSPSIG00000017388)	NCAN (ENSPSIG00000017408)	ENSPSIG00000017603	ENSPSIG00000001137	NR2C2AP (ENSPSIG00000017608)	RFXANK (ENSPSIG00000017645)	BORCS8 (ENSPSIG00000006585)	TMEM161A (ENSPSIG00000006789) ##22	SLC25A42 (ENSPSIG00000007452)	ARMC6 (ENSPSIG00000008070)	SUGP2 (ENSPSIG00000008256)	ENSPSIG00000008490	HOMER3 (ENSPSIG00000008524)	DDX49 (ENSPSIG00000008625)	COPE (ENSPSIG00000009381)	CERS1 (ENSPSIG00000009415)	ENSPSIG00000009471	UPF1 (ENSPSIG00000009491)	ENSPSIG00000009643	CRTC1 (ENSPSIG00000010543)	KLHL26 (ENSPSIG00000010574)	TMEM59L (ENSPSIG00000010763)	CRLF1 (ENSPSIG00000011140)
Archosauria	ANCESTRAL SPECIES	16	ENSGT00390000008152.B.a	ENSGT00390000007227.b	ENSGT00390000000719	ENSGT00390000004097.a	ENSGT01060000249150	ENSGT00390000012198	ENSGT00410000025695.a	ENSGT00390000012913.a	ENSGT00940000160926	ENSGT00940000158649	ENSGT00390000017748	ENSGT00940000160753	ENSGT00390000014856	ENSGT00940000165199	ENSGT00940000160699	ENSGT00390000000672.a.a ##22	ENSGT00940000158163	ENSGT00390000002913	ENSGT00410000025695.b	ENSGT00940000167763	ENSGT00940000158081	ENSGT00730000111231	ENSGT00390000003478	ENSGT01030000234515.b	ENSGT00940000164416	ENSGT00940000157413	ENSGT00940000155227	ENSGT00390000010652.D.b	ENSGT00940000159238.b	ENSGT00390000008279.b	ENSGT00940000156569.a.b
Aves	ANCESTRAL SPECIES	20	ENSGT00390000008152.B.a	ENSGT00390000007227.b	ENSGT00390000000719	ENSGT00390000004097.a	ENSGT01060000249150	ENSGT00390000012198	ENSGT00410000025695.a	ENSGT00390000012913.a	ENSGT00940000160926	ENSGT00940000158649	ENSGT00390000017748	ENSGT00940000160753	ENSGT00390000014856	ENSGT00940000165199	ENSGT00940000160699	ENSGT00390000000672.a.a ##22	ENSGT00940000158163	ENSGT00390000002913	ENSGT00410000025695.b	ENSGT00940000167763	ENSGT00940000158081	ENSGT00730000111231	ENSGT00390000003478	ENSGT01030000234515.b	ENSGT00940000164416	ENSGT00940000157413	ENSGT00940000155227	ENSGT00390000010652.D.b	ENSGT00940000159238.b	ENSGT00390000008279.b	ENSGT00940000156569.a.b
Neognathae	ANCESTRAL SPECIES	21	ENSGT00390000008152.B.a	ENSGT00390000007227.b	ENSGT00390000000719	ENSGT00390000004097.a	ENSGT01060000249150	ENSGT00390000012198	ENSGT00410000025695.a	ENSGT00390000012913.a	ENSGT00940000160926	ENSGT00940000158649	ENSGT00390000017748	ENSGT00940000160753	ENSGT00390000014856	ENSGT00940000165199	ENSGT00940000160699	ENSGT00390000000672.a.a ##22	ENSGT00940000158163	ENSGT00390000002913	ENSGT00410000025695.b	ENSGT00940000167763	ENSGT00940000158081	ENSGT00730000111231	ENSGT00390000003478	ENSGT01030000234515.b	ENSGT00940000164416	ENSGT00940000157413	ENSGT00940000155227	ENSGT00390000010652.D.b	ENSGT00940000159238.b	ENSGT00390000008279.b	ENSGT00940000156569.a.b
Galloanserae	ANCESTRAL SPECIES	20	ENSGT00970000194286	ENSGT00390000008152.B.a	ENSGT00390000007227.b	ENSGT00390000000719	ENSGT00390000004097.a	ENSGT00390000012198	ENSGT00410000025695.a	ENSGT00390000012913.a	ENSGT00940000160926	ENSGT00940000158649.d	ENSGT00390000017748	ENSGT00940000160753	ENSGT00390000014856	ENSGT00940000165199	ENSGT00940000160699	ENSGT00390000000672.a.a ##22	ENSGT00940000158163	ENSGT00390000002913	ENSGT00410000025695.b	ENSGT00940000167763	ENSGT00940000158081	ENSGT00730000111231	ENSGT00390000003478	ENSGT01030000234515.b	ENSGT00940000164416	ENSGT00940000157413	ENSGT00940000155227	ENSGT00390000010652.D.b	ENSGT00940000159238.b	ENSGT00390000008279.b	ENSGT00940000156569.a.b
Anatidae	ANCESTRAL SPECIES	71	ENSGT00390000006166	ENSGT00390000008152.B.a	ENSGT00390000007227.b	ENSGT00390000000719	ENSGT00390000004097.a	ENSGT00390000012198	ENSGT00410000025695.a	ENSGT00390000012913.a	ENSGT00940000160926	ENSGT00940000158649.d	ENSGT00390000017748	ENSGT00940000160753	ENSGT00390000014856	ENSGT00940000165199	ENSGT00940000160699	ENSGT00390000000672.a.a ##22	ENSGT00940000158163	ENSGT00390000002913	ENSGT00410000025695.b	ENSGT00940000158081	ENSGT00730000111231	ENSGT00390000003478	ENSGT01030000234515.b	ENSGT00940000164416	ENSGT00940000157413	ENSGT00940000155227	ENSGT00390000010652.D.b	ENSGT00940000159238.b	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00940000166035
Pink-footed goose	MODERN SPECIES	308	ENSABRG00000002971	CILP2 (ENSABRG00000003000)	YJEFN3 (ENSABRG00000003014)	NDUFA13 (ENSABRG00000003036)	GATAD2A (ENSABRG00000003048)	MAU2 (ENSABRG00000003093)	SUGP1 (ENSABRG00000003136)	TM6SF2 (ENSABRG00000003169)	HAPLN4 (ENSABRG00000003196)	NCAN (ENSABRG00000003206)	ENSABRG00000003239	RFXANK (ENSABRG00000003275)	BORCS8 (ENSABRG00000003310)	ENSABRG00000003339	MEF2B (ENSABRG00000003346)	TMEM161A (ENSABRG00000003380) ##22	SLC25A42 (ENSABRG00000003394)	ARMC6 (ENSABRG00000003410)	SUGP2 (ENSABRG00000003433)	HOMER3 (ENSABRG00000003480)	DDX49 (ENSABRG00000003533)	COPE (ENSABRG00000003553)	CERS1 (ENSABRG00000003583)	ENSABRG00000003615	UPF1 (ENSABRG00000003691)	ENSABRG00000005294	CRTC1 (ENSABRG00000005352)	KLHL26 (ENSABRG00000005372)	TMEM59L (ENSABRG00000005381)	CRLF1 (ENSABRG00000005385)	UBA52 (ENSABRG00000005391)
Duck	MODERN SPECIES	20	NCLN (ENSAPLG00000004844)	CELF5 (ENSAPLG00000005174)	HSD11B1L (ENSAPLG00000005717)	MICOS13 (ENSAPLG00000001598)	ENSAPLG00000005780	ENSAPLG00000006355	ENSAPLG00000020158	ENSAPLG00000019522	MAU2 (ENSAPLG00000002818)	SUGP1 (ENSAPLG00000002500)	HAPLN4 (ENSAPLG00000000916)	ENSAPLG00000017029	NR2C2AP (ENSAPLG00000016443)	RFXANK (ENSAPLG00000016423)	ENSAPLG00000025930	TMEM161A (ENSAPLG00000006657) ##22	SLC25A42 (ENSAPLG00000006582)	ARMC6 (ENSAPLG00000006480)	SUGP2 (ENSAPLG00000006469)	HOMER3 (ENSAPLG00000008170)	COPE (ENSAPLG00000008757)	CERS1 (ENSAPLG00000008945)	ENSAPLG00000009148	UPF1 (ENSAPLG00000009175)	ENSAPLG00000009709	CRTC1 (ENSAPLG00000010657)	KLHL26 (ENSAPLG00000011078)	ELL (ENSAPLG00000006360)	PGPEP1 (ENSAPLG00000007370)	ENSAPLG00000001869	ARHGEF18 (ENSAPLG00000015732)
Phasianidae	ANCESTRAL SPECIES	19	ENSGT00390000006166	ENSGT00390000008152.B.a	ENSGT00390000007227.b	ENSGT00390000000719	ENSGT00390000004097.a	ENSGT00390000012198	ENSGT00410000025695.a	ENSGT00390000012913.a	ENSGT00940000160926	ENSGT00940000158649.d	ENSGT00390000017748	ENSGT00940000160753	ENSGT00390000014856	ENSGT00940000165199	ENSGT00940000160699	ENSGT00390000000672.a.a ##22	ENSGT00940000158163	ENSGT00390000002913	ENSGT00410000025695.b	ENSGT00940000167763	ENSGT00940000158081	ENSGT00730000111231	ENSGT00390000003478	ENSGT01030000234515.b	ENSGT00940000164416	ENSGT00940000157413	ENSGT00940000155227	ENSGT00390000010652.D.b	ENSGT00940000159238.b	ENSGT00390000008279.b	ENSGT00940000156569.a.b
Phasianidae_b	ANCESTRAL SPECIES	20	ENSGT00970000194286	ENSGT00390000008152.B.a	ENSGT00390000007227.b	ENSGT00390000000719	ENSGT00390000004097.a	ENSGT00390000012198	ENSGT00410000025695.a	ENSGT00390000012913.a	ENSGT00940000160926	ENSGT00940000158649.d	ENSGT00390000017748	ENSGT00940000160753	ENSGT00390000014856	ENSGT00940000165199	ENSGT00940000160699	ENSGT00390000000672.a.a ##22	ENSGT00940000158163	ENSGT00390000002913	ENSGT00410000025695.b	ENSGT00940000167763	ENSGT00940000158081	ENSGT00730000111231	ENSGT00390000003478	ENSGT01030000234515.b	ENSGT00940000164416	ENSGT00940000157413	ENSGT00940000155227	ENSGT00390000010652.D.b	ENSGT00940000159238.b	ENSGT00390000008279.b	ENSGT00940000156569.a.b
Chicken	MODERN SPECIES	20	ENSGALG00010028610	CILP2 (ENSGALG00010028510)	YJEFN3 (ENSGALG00010028511)	NDUFA13 (ENSGALG00010028512)	GATAD2A (ENSGALG00010028516)	MAU2 (ENSGALG00010028518)	SUGP1 (ENSGALG00010028523)	TM6SF2 (ENSGALG00010028525)	HAPLN4 (ENSGALG00010028379)	NCAN (ENSGALG00010028386)	NR2C2AP (ENSGALG00010028430)	RFXANK (ENSGALG00010028432)	BORCS8 (ENSGALG00010028439)	ENSGALG00010028443	MEF2B (ENSGALG00010028444)	TMEM161A (ENSGALG00010028131) ##22	SLC25A42 (ENSGALG00010028147)	ARMC6 (ENSGALG00010028150)	SUGP2 (ENSGALG00010028124)	ENSGALG00010028446	ENSGALG00010028152	HOMER3 (ENSGALG00010028744)	DDX49 (ENSGALG00010028158)	COPE (ENSGALG00010028170)	CERS1 (ENSGALG00010028172)	GDF3 (ENSGALG00010028173)	UPF1 (ENSGALG00010028176)	COMP (ENSGALG00010028177)	CRTC1 (ENSGALG00010028183)	KLHL26 (ENSGALG00010028191)	TMEM59L (ENSGALG00010028451)
Turkey	MODERN SPECIES	23	ENSMGAG00000022068	ENSMGAG00000004246	ENSMGAG00000004273	THOP1 (ENSMGAG00000004287)	SGTA (ENSMGAG00000004305)	SLC39A3 (ENSMGAG00000004341)	DIRAS1 (ENSMGAG00000016227)	HAPLN4 (ENSMGAG00000004362)	ENSMGAG00000020135	NR2C2AP (ENSMGAG00000017590)	RFXANK (ENSMGAG00000004446)	BORCS8 (ENSMGAG00000004466)	ENSMGAG00000004351	MEF2B (ENSMGAG00000004354)	ENSMGAG00000018039	TMEM161A (ENSMGAG00000004433) ##22	SLC25A42 (ENSMGAG00000004473)	ARMC6 (ENSMGAG00000004486)	SUGP2 (ENSMGAG00000004496)	ENSMGAG00000004513	HOMER3 (ENSMGAG00000004581)	DDX49 (ENSMGAG00000004605)	COPE (ENSMGAG00000004649)	CERS1 (ENSMGAG00000004709)	ENSMGAG00000004721	UPF1 (ENSMGAG00000004745)	ENSMGAG00000004780	ENSMGAG00000004970	TMEM59L (ENSMGAG00000004986)	CRLF1 (ENSMGAG00000008435)	ENSMGAG00000021060
Neognathae_b	ANCESTRAL SPECIES	22	ENSGT00390000008152.B.a	ENSGT00390000007227.b	ENSGT00390000000719	ENSGT00390000004097.a	ENSGT01060000249150	ENSGT00390000012198	ENSGT00410000025695.a.h	ENSGT00390000012913.a	ENSGT00940000160926	ENSGT00940000158649	ENSGT00390000017748	ENSGT00940000160753	ENSGT00390000014856	ENSGT00940000165199	ENSGT00940000160699	ENSGT00390000000672.a.a ##22	ENSGT00940000158163	ENSGT00390000002913	ENSGT00410000025695.b	ENSGT00940000167763	ENSGT00940000158081	ENSGT00730000111231	ENSGT00390000003478	ENSGT01030000234515.b	ENSGT00940000164416	ENSGT00940000157413	ENSGT00940000155227	ENSGT00390000010652.D.b	ENSGT00940000159238.b	ENSGT00390000008279.b	ENSGT00940000156569.a.b
Passeriformes	ANCESTRAL SPECIES	34	ENSGT00970000194286	ENSGT00390000008152.B.a	ENSGT00390000000719	ENSGT00390000004097.a	ENSGT01060000249150	ENSGT00390000012198	ENSGT00410000025695.a.h	ENSGT00390000012913.a	ENSGT00940000160926	ENSGT00940000158649	ENSGT00390000017748	ENSGT00940000160753	ENSGT00390000014856	ENSGT00940000165199	ENSGT00940000160699	ENSGT00390000000672.a.a ##22	ENSGT00940000158163	ENSGT00390000002913	ENSGT00410000025695.b	ENSGT00940000158081	ENSGT00730000111231	ENSGT00390000003478	ENSGT01030000234515.b	ENSGT00940000164416	ENSGT00940000157413	ENSGT00940000155227	ENSGT00390000010652.D.b	ENSGT00940000159238.b	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00940000166035
Great tit	MODERN SPECIES	282						MAU2 (ENSPMJG00000001205)	ENSPMJG00000001215	TM6SF2 (ENSPMJG00000001219)	HAPLN4 (ENSPMJG00000001224)	NCAN (ENSPMJG00000001279)	ENSPMJG00000001294	ENSPMJG00000001342	BORCS8 (ENSPMJG00000001351)	ENSPMJG00000001365	MEF2B (ENSPMJG00000001372)	ENSPMJG00000001384 ##22
Passeriformes_d	ANCESTRAL SPECIES	35	ENSGT00970000194286	ENSGT00390000008152.B.a	ENSGT00390000000719	ENSGT00390000004097.a	ENSGT01060000249150	ENSGT00390000012198	ENSGT00410000025695.a.h	ENSGT00390000012913.a	ENSGT00940000160926	ENSGT00940000158649	ENSGT00390000017748	ENSGT00940000160753	ENSGT00390000014856	ENSGT00940000165199	ENSGT00940000160699	ENSGT00390000000672.a.a ##22	ENSGT00940000158163	ENSGT00390000002913	ENSGT00410000025695.b	ENSGT00940000158081	ENSGT00730000111231	ENSGT00390000003478	ENSGT01030000234515.b	ENSGT00940000164416	ENSGT00940000157413	ENSGT00940000155227	ENSGT00390000010652.D.b	ENSGT00940000159238.b	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00940000166035
Passeriformes_g	ANCESTRAL SPECIES	39	ENSGT00390000016851	ENSGT00970000194286	ENSGT00390000008152.B.a	ENSGT00390000000719	ENSGT00390000004097.a	ENSGT01060000249150	ENSGT00390000012198	ENSGT00410000025695.a.h	ENSGT00390000012913.a	ENSGT00940000160926	ENSGT00940000158649	ENSGT00390000017748	ENSGT00940000160753	ENSGT00390000014856	ENSGT00940000160699	ENSGT00390000000672.a.a ##22	ENSGT00940000158163	ENSGT00390000002913	ENSGT00410000025695.b	ENSGT00940000158081	ENSGT00730000111231	ENSGT00390000003478	ENSGT01030000234515.b	ENSGT00940000164416	ENSGT00940000157413	ENSGT00940000155227	ENSGT00390000010652.D.b	ENSGT00940000159238.b	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00940000166035
Passeroidea	ANCESTRAL SPECIES	38	ENSGT00390000016851	ENSGT00970000194286	ENSGT00390000008152.B.a	ENSGT00390000000719	ENSGT00390000004097.a	ENSGT01060000249150	ENSGT00390000012198	ENSGT00410000025695.a.h	ENSGT00390000012913.a	ENSGT00940000160926	ENSGT00940000158649	ENSGT00390000017748	ENSGT00940000160753	ENSGT00390000014856	ENSGT00940000160699	ENSGT00390000000672.a.a ##22	ENSGT00940000158163	ENSGT00390000002913	ENSGT00410000025695.b	ENSGT00940000158081	ENSGT00730000111231	ENSGT00390000003478	ENSGT01030000234515.b	ENSGT00940000164416	ENSGT00940000157413	ENSGT00940000155227	ENSGT00390000010652.D.b	ENSGT00940000159238.b	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00940000166035
Common canary	MODERN SPECIES	300																ENSSCAG00000007443 ##22
Zebra finch	MODERN SPECIES	21	ENSTGUG00000024768	ENSTGUG00000015926	ENSTGUG00000021489	ENSTGUG00000020486	ENSTGUG00000026134	CILP2 (ENSTGUG00000019631)	SUGP1 (ENSTGUG00000013941)	TM6SF2 (ENSTGUG00000013966)	HAPLN4 (ENSTGUG00000019161)	NCAN (ENSTGUG00000019059)	ENSTGUG00000020853	RFXANK (ENSTGUG00000014033)	ENSTGUG00000024488	MEF2B (ENSTGUG00000022364)	ENSTGUG00000023122	TMEM161A (ENSTGUG00000025437) ##22	SLC25A42 (ENSTGUG00000020561)	ARMC6 (ENSTGUG00000001090)	SUGP2 (ENSTGUG00000001088)	HOMER3 (ENSTGUG00000001080)	DDX49 (ENSTGUG00000001072)	ENSTGUG00000029565	CERS1 (ENSTGUG00000014035)	ENSTGUG00000028778	UPF1 (ENSTGUG00000001057)	ENSTGUG00000014102	CRTC1 (ENSTGUG00000001067)	KLHL26 (ENSTGUG00000001064)	TMEM59L (ENSTGUG00000020934)	CRLF1 (ENSTGUG00000001061)	ENSTGUG00000028566
Flycatcher	MODERN SPECIES	429																ENSFALG00000026430 ##22
Neognathae_c	ANCESTRAL SPECIES	24	ENSGT00390000006166	ENSGT00390000008152.B.a	ENSGT00390000007227.b	ENSGT00390000000719	ENSGT00390000004097.a	ENSGT00390000012198	ENSGT00410000025695.a.h	ENSGT00390000012913.a	ENSGT00940000160926	ENSGT00940000158649	ENSGT00390000017748	ENSGT00940000160753	ENSGT00390000014856	ENSGT00940000165199	ENSGT00940000160699	ENSGT00390000000672.a.a ##22	ENSGT00940000158163	ENSGT00390000002913	ENSGT00410000025695.b	ENSGT00940000167763	ENSGT00940000158081	ENSGT00730000111231	ENSGT00390000003478	ENSGT01030000234515.b	ENSGT00940000164416	ENSGT00940000157413	ENSGT00940000155227	ENSGT00390000010652.D.b	ENSGT00940000159238.b	ENSGT00390000008279.b	ENSGT00940000156569.a.b
Golden eagle	MODERN SPECIES	3	CILP2 (ENSACCG00020005178)	YJEFN3 (ENSACCG00020005188)	NDUFA13 (ENSACCG00020005202)	GATAD2A (ENSACCG00020005214)	MAU2 (ENSACCG00020005272)	SUGP1 (ENSACCG00020005346)	TM6SF2 (ENSACCG00020005379)	HAPLN4 (ENSACCG00020005415)	NCAN (ENSACCG00020005458)	ENSACCG00020005528	NR2C2AP (ENSACCG00020005548)	RFXANK (ENSACCG00020005611)	BORCS8 (ENSACCG00020005634)	ENSACCG00020005651	MEF2B (ENSACCG00020005665)	TMEM161A (ENSACCG00020005730) ##22	SLC25A42 (ENSACCG00020005755)	ARMC6 (ENSACCG00020005768)	SUGP2 (ENSACCG00020005795)	HOMER3 (ENSACCG00020005833)	DDX49 (ENSACCG00020005865)	COPE (ENSACCG00020005888)	CERS1 (ENSACCG00020005915)	ENSACCG00020005919	UPF1 (ENSACCG00020005946)	ENSACCG00020005982	CRTC1 (ENSACCG00020006031)	KLHL26 (ENSACCG00020006048)	TMEM59L (ENSACCG00020006064)	ENSACCG00020006087	ENSACCG00020006101
Kakapo	MODERN SPECIES	13	ENSSHBG00005015986	CILP2 (ENSSHBG00005015990)	YJEFN3 (ENSSHBG00005016001)	NDUFA13 (ENSSHBG00005016006)	GATAD2A (ENSSHBG00005016010)	MAU2 (ENSSHBG00005016045)	SUGP1 (ENSSHBG00005016077)	TM6SF2 (ENSSHBG00005016084)	HAPLN4 (ENSSHBG00005016090)	NCAN (ENSSHBG00005016099)	NR2C2AP (ENSSHBG00005016311)	RFXANK (ENSSHBG00005016324)	BORCS8 (ENSSHBG00005016340)	ENSSHBG00005016346	MEF2B (ENSSHBG00005016361)	TMEM161A (ENSSHBG00005016377) ##22	SLC25A42 (ENSSHBG00005016405)	ARMC6 (ENSSHBG00005016636)	SUGP2 (ENSSHBG00005016643)	ENSSHBG00005016648	HOMER3 (ENSSHBG00005016668)	ENSSHBG00005016679	DDX49 (ENSSHBG00005016700)	COPE (ENSSHBG00005017048)	CERS1 (ENSSHBG00005017057)	ENSSHBG00005017060	UPF1 (ENSSHBG00005017089)	ENSSHBG00005017399	CRTC1 (ENSSHBG00005017446)	KLHL26 (ENSSHBG00005017448)	TMEM59L (ENSSHBG00005017449)
Australian saltwater crocodile	MODERN SPECIES	3	GADD45B (ENSCPRG00005015639)	ENSCPRG00005015644	CARTPT (ENSCPRG00005015645)	YJEFN3 (ENSCPRG00005015647)	NDUFA13 (ENSCPRG00005015651)	GATAD2A (ENSCPRG00005015653)	MAU2 (ENSCPRG00005015658)	SUGP1 (ENSCPRG00005015667)	TM6SF2 (ENSCPRG00005015672)	HAPLN4 (ENSCPRG00005015677)	NR2C2AP (ENSCPRG00005015681)	RFXANK (ENSCPRG00005015684)	BORCS8 (ENSCPRG00005015689)	ENSCPRG00005015692	MEF2B (ENSCPRG00005015695)	TMEM161A (ENSCPRG00005015699) ##22	SLC25A42 (ENSCPRG00005015701)	ARMC6 (ENSCPRG00005015704)	SUGP2 (ENSCPRG00005015708)	ENSCPRG00005015709	HOMER3 (ENSCPRG00005015713)	DDX49 (ENSCPRG00005015719)	COPE (ENSCPRG00005015722)	ENSCPRG00005015724	UPF1 (ENSCPRG00005015727)	ENSCPRG00005015729	CRTC1 (ENSCPRG00005015733)	ENSCPRG00005015738	ENSCPRG00005015741	KLHL26 (ENSCPRG00005015744)	ENSCPRG00005015746
Mammalia	ANCESTRAL SPECIES	39	ENSGT00390000007227.b	ENSGT00960000189525	ENSGT00390000000719	ENSGT00940000160464	ENSGT00390000004097.a	ENSGT00390000012198	ENSGT00410000025695.a	ENSGT00390000012913.a	ENSGT00940000160926	ENSGT00940000158649	ENSGT00390000017748	ENSGT00940000160753	ENSGT00390000014856	ENSGT00940000165199	ENSGT00940000160699	ENSGT00390000000672.a.a ##22	ENSGT00940000158163	ENSGT00390000002913	ENSGT00410000025695.b	ENSGT00940000167763	ENSGT00940000158081	ENSGT00730000111231	ENSGT00390000003478	ENSGT01030000234515.b	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00940000166035
Theria	ANCESTRAL SPECIES	31	ENSGT00390000008152.B.a	ENSGT00390000007227.b	ENSGT00960000189525	ENSGT00390000000719	ENSGT00940000160464	ENSGT00390000004097.a	ENSGT00390000012198	ENSGT00410000025695.a	ENSGT00390000012913.a	ENSGT00940000160926	ENSGT00940000158649	ENSGT00390000017748	ENSGT00940000160753	ENSGT00390000014856	ENSGT00940000160699	ENSGT00390000000672.a.a ##22	ENSGT00940000158163	ENSGT00390000002913	ENSGT00410000025695.b	ENSGT00940000167763	ENSGT00940000158081	ENSGT00730000111231	ENSGT00390000003478	ENSGT01030000234515.b	ENSGT00940000162926	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b
Marsupialia	ANCESTRAL SPECIES	25	ENSGT00940000159179	ENSGT00940000156470	ENSGT00940000162150	ENSGT00940000165800	ENSGT00940000155854.d	ENSGT00940000163280	ENSGT00940000158590	ENSGT00940000160463	ENSGT00950000183103.d.b	ENSGT00940000157036	ENSGT00390000018299	ENSGT00950000183005.b.c	ENSGT00940000162613	ENSGT00940000165199	ENSGT00940000160699	ENSGT00390000000672.a.a ##22	ENSGT00940000158163	ENSGT00390000002913	ENSGT00410000025695.b	ENSGT00940000167763	ENSGT00940000158081	ENSGT00730000111231	ENSGT00390000003478	ENSGT01030000234515.b	ENSGT00940000162926	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b
Marsupialia_b	ANCESTRAL SPECIES	24	ENSGT00940000159179	ENSGT00940000156470	ENSGT00940000162150	ENSGT00940000165800	ENSGT00940000155854.d	ENSGT00940000163280	ENSGT00940000158590	ENSGT00940000160463	ENSGT00950000183103.d.b	ENSGT00940000157036	ENSGT00390000018299	ENSGT00950000183005.b.c	ENSGT00940000162613	ENSGT00940000165199	ENSGT00940000160699	ENSGT00390000000672.a.a ##22	ENSGT00940000158163	ENSGT00390000002913	ENSGT00410000025695.b	ENSGT00940000167763	ENSGT00940000158081	ENSGT00730000111231	ENSGT00390000003478	ENSGT01030000234515.b	ENSGT00940000162926	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b
Diprotodontia	ANCESTRAL SPECIES	54					ENSGT00940000155854.d	ENSGT00940000163280	ENSGT00940000158590	ENSGT00940000160463	ENSGT00950000183103.d.b	ENSGT00940000157036	ENSGT00390000018299	ENSGT00950000183005.b.c	ENSGT00940000162613	ENSGT00940000165199	ENSGT00940000160699	ENSGT00390000000672.a.a ##22	ENSGT00940000158163	ENSGT00390000002913	ENSGT00410000025695.b	ENSGT00940000167763	ENSGT00940000158081	ENSGT00730000111231	ENSGT00390000003478	ENSGT01030000234515.b	ENSGT00940000162926	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b
Diprotodontia_a	ANCESTRAL SPECIES	53					ENSGT00940000155854.d	ENSGT00940000163280	ENSGT00940000158590	ENSGT00940000160463	ENSGT00950000183103.d.b	ENSGT00940000157036	ENSGT00390000018299	ENSGT00950000183005.b.c	ENSGT00940000162613	ENSGT00940000165199	ENSGT00940000160699	ENSGT00390000000672.a.a ##22	ENSGT00940000158163	ENSGT00390000002913	ENSGT00410000025695.b	ENSGT00940000167763	ENSGT00940000158081	ENSGT00730000111231	ENSGT00390000003478	ENSGT01030000234515.b	ENSGT00940000162926	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b
Common wonbat	MODERN SPECIES	626	ENSVURG00010015600	SCAMP4 (ENSVURG00010015592)	ENSVURG00010015582	ENSVURG00010015577	ABHD17A (ENSVURG00010015569)	KLF16 (ENSVURG00010015560)	REXO1 (ENSVURG00010015541)	ATP8B3 (ENSVURG00010015529)	ONECUT3 (ENSVURG00010015518)	TCF3 (ENSVURG00010015477)	ENSVURG00010015467	ENSVURG00010015463	MEX3D (ENSVURG00010015379)	ENSVURG00010015363	MEF2B (ENSVURG00010015357)	TMEM161A (ENSVURG00010015346) ##22	SLC25A42 (ENSVURG00010015339)	ARMC6 (ENSVURG00010015325)	SUGP2 (ENSVURG00010015311)	HOMER3 (ENSVURG00010015278)	DDX49 (ENSVURG00010015248)	COPE (ENSVURG00010015238)	CERS1 (ENSVURG00010015235)	ENSVURG00010015230	UPF1 (ENSVURG00010015221)	KLHL26 (ENSVURG00010015213)	ENSVURG00010015204	CRLF1 (ENSVURG00010015189)	ENSVURG00010015181	UBA52 (ENSVURG00010015122)	KXD1 (ENSVURG00010015106)
koala	MODERN SPECIES	133	SCAMP4 (ENSPCIG00000030510)	ENSPCIG00000030514	ENSPCIG00000031601	ENSPCIG00000021249	KLF16 (ENSPCIG00000005422)	REXO1 (ENSPCIG00000013942)	ATP8B3 (ENSPCIG00000000575)	ONECUT3 (ENSPCIG00000000607)	TCF3 (ENSPCIG00000000701)	ENSPCIG00000000759	ENSPCIG00000000769	ENSPCIG00000000783	MEX3D (ENSPCIG00000000826)	ENSPCIG00000000833	MEF2B (ENSPCIG00000000841)	TMEM161A (ENSPCIG00000000862) ##22	SLC25A42 (ENSPCIG00000033976)	ARMC6 (ENSPCIG00000000957)	SUGP2 (ENSPCIG00000000974)	ENSPCIG00000000990	HOMER3 (ENSPCIG00000001019)	DDX49 (ENSPCIG00000001050)	COPE (ENSPCIG00000001137)	CERS1 (ENSPCIG00000006153)	ENSPCIG00000006155	UPF1 (ENSPCIG00000006156)	COMP (ENSPCIG00000006229)	CRTC1 (ENSPCIG00000023392)	KLHL26 (ENSPCIG00000012947)	ENSPCIG00000031076	CRLF1 (ENSPCIG00000016157)
Wallaby	MODERN SPECIES	6135																ENSMEUG00000010477 ##22
Tasmanian devil	MODERN SPECIES		BTBD2 (ENSSHAG00000020860)	CSNK1G2 (ENSSHAG00000006727)	SCAMP4 (ENSSHAG00000028703)	ENSSHAG00000024353	ENSSHAG00000031510	ABHD17A (ENSSHAG00000025789)	KLF16 (ENSSHAG00000028587)	REXO1 (ENSSHAG00000026227)	ENSSHAG00000014873	ONECUT3 (ENSSHAG00000031650)	TCF3 (ENSSHAG00000013735)	ENSSHAG00000013346	ENSSHAG00000024607	ENSSHAG00000030655	ENSSHAG00000012631	TMEM161A (ENSSHAG00000012380) ##22	SLC25A42 (ENSSHAG00000021004)	SUGP2 (ENSSHAG00000011705)	ARMC6 (ENSSHAG00000011840)	ENSSHAG00000011270	HOMER3 (ENSSHAG00000011091)	DDX49 (ENSSHAG00000010982)	COPE (ENSSHAG00000010821)	ENSSHAG00000030192	CERS1 (ENSSHAG00000010705)	UPF1 (ENSSHAG00000010499)	COMP (ENSSHAG00000009531)	CRTC1 (ENSSHAG00000009155)	KLHL26 (ENSSHAG00000008083)	ENSSHAG00000024929	CRLF1 (ENSSHAG00000007192)
Opossum	MODERN SPECIES	2	BTBD2 (ENSMODG00000004538)	CSNK1G2 (ENSMODG00000004527)	SCAMP4 (ENSMODG00000043612)	ENSMODG00000004462	ENSMODG00000004426	ENSMODG00000004421	ENSMODG00000038677	REXO1 (ENSMODG00000004395)	ATP8B3 (ENSMODG00000004209)	ONECUT3 (ENSMODG00000004149)	TCF3 (ENSMODG00000004143)	UQCR11 (ENSMODG00000004132)	ENSMODG00000004125	MEX3D (ENSMODG00000004116)	MEF2B (ENSMODG00000004105)	TMEM161A (ENSMODG00000004083) ##22	SLC25A42 (ENSMODG00000045593)	ARMC6 (ENSMODG00000004028)	SUGP2 (ENSMODG00000003992)	ENSMODG00000043314	HOMER3 (ENSMODG00000003771)	DDX49 (ENSMODG00000003745)	COPE (ENSMODG00000003729)	CERS1 (ENSMODG00000023939)	GDF1 (ENSMODG00000049198)	UPF1 (ENSMODG00000003689)	COMP (ENSMODG00000003651)	CRTC1 (ENSMODG00000003607)	KLHL26 (ENSMODG00000003568)	ENSMODG00000003550	CRLF1 (ENSMODG00000003510)
Eutheria	ANCESTRAL SPECIES	24	ENSGT00390000008152.B.a	ENSGT00390000007227.b	ENSGT00960000189525	ENSGT00390000000719	ENSGT00940000160464	ENSGT00390000004097.a	ENSGT00390000012198	ENSGT00410000025695.a	ENSGT00390000012913.a	ENSGT00940000160926	ENSGT00940000158649	ENSGT00390000017748	ENSGT00940000160753	ENSGT00390000014856	ENSGT00940000160699	ENSGT00390000000672.a.a ##22	ENSGT00940000158163	ENSGT00390000002913	ENSGT00410000025695.b	ENSGT00940000158081	ENSGT00730000111231	ENSGT00390000003478	ENSGT01030000234515.b	ENSGT00940000162926	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00390000011631
Boreoeutheria	ANCESTRAL SPECIES	18	ENSGT00390000007227.b	ENSGT00960000189525	ENSGT00390000000719	ENSGT00940000160464	ENSGT01090000261752	ENSGT00390000004097.a	ENSGT00390000012198	ENSGT00410000025695.a	ENSGT00390000012913.a	ENSGT00940000160926	ENSGT00940000158649	ENSGT00390000017748	ENSGT00940000160753	ENSGT00390000014856	ENSGT00940000160699	ENSGT00390000000672.a.a ##22	ENSGT00940000158163	ENSGT00390000002913	ENSGT00410000025695.b	ENSGT00940000158081	ENSGT00730000111231	ENSGT00390000003478	ENSGT01030000234515.b	ENSGT00940000162926	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00910000147684
Euarchontoglires	ANCESTRAL SPECIES	18	ENSGT00390000008152.B.a	ENSGT00390000007227.b	ENSGT00390000000719	ENSGT00940000160464	ENSGT01090000261752	ENSGT00390000004097.a	ENSGT00390000012198	ENSGT00410000025695.a	ENSGT00390000012913.a	ENSGT00940000160926	ENSGT00940000158649	ENSGT00390000017748	ENSGT00940000160753	ENSGT00390000014856	ENSGT00940000160699	ENSGT00390000000672.a.a ##22	ENSGT00940000158163	ENSGT00390000002913	ENSGT00410000025695.b	ENSGT00940000158081	ENSGT00730000111231	ENSGT00390000003478	ENSGT01030000234515.b	ENSGT00940000162926	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00910000147684
Primates	ANCESTRAL SPECIES	18	ENSGT00940000162643	ENSGT00390000008152.B.a	ENSGT00390000007227.b	ENSGT00390000000719	ENSGT00940000160464	ENSGT00390000004097.a	ENSGT00390000012198	ENSGT00410000025695.a	ENSGT00390000012913.a	ENSGT00940000160926	ENSGT00940000158649	ENSGT00390000017748	ENSGT00940000160753	ENSGT00390000014856	ENSGT00940000160699	ENSGT00390000000672.a.a ##22	ENSGT00940000158163	ENSGT00390000002913	ENSGT00410000025695.b	ENSGT00940000158081	ENSGT00730000111231	ENSGT00390000003478	ENSGT01030000234515.b	ENSGT00940000162926	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00910000147684
Haplorrhini	ANCESTRAL SPECIES	14	ENSGT00940000162643	ENSGT00390000008152.B.a	ENSGT00390000007227.b	ENSGT00390000000719	ENSGT00940000160464	ENSGT00390000004097.a	ENSGT00390000012198	ENSGT00410000025695.a	ENSGT00390000012913.a	ENSGT00940000160926	ENSGT00940000158649	ENSGT00390000017748	ENSGT00940000160753	ENSGT00390000014856	ENSGT00940000160699	ENSGT00390000000672.a.a ##22	ENSGT00940000158163	ENSGT00390000002913	ENSGT00410000025695.b	ENSGT00940000158081	ENSGT00730000111231	ENSGT00390000003478	ENSGT01030000234515.b	ENSGT00940000162926	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00910000147684
Simiiformes	ANCESTRAL SPECIES	13	ENSGT00940000162643	ENSGT00390000008152.B.a	ENSGT00390000007227.b	ENSGT00390000000719	ENSGT00940000160464	ENSGT00390000004097.a	ENSGT00390000012198	ENSGT00410000025695.a	ENSGT00390000012913.a	ENSGT00940000160926	ENSGT00940000158649	ENSGT00390000017748	ENSGT00940000160753	ENSGT00390000014856	ENSGT00940000160699	ENSGT00390000000672.a.a ##22	ENSGT00940000158163	ENSGT00390000002913	ENSGT00410000025695.b	ENSGT00940000158081	ENSGT00730000111231	ENSGT00390000003478	ENSGT01030000234515.b	ENSGT00940000162926	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00910000147684
Catarrhini	ANCESTRAL SPECIES		ENSGT00940000162643	ENSGT00390000008152.B.a	ENSGT00390000007227.b	ENSGT00390000000719	ENSGT00940000160464	ENSGT00390000004097.a	ENSGT00390000012198	ENSGT00410000025695.a.n.a	ENSGT00390000012913.a	ENSGT00940000160926	ENSGT00940000158649	ENSGT00390000017748	ENSGT00940000160753	ENSGT00390000014856.d	ENSGT00940000160699	ENSGT00390000000672.a.a ##22	ENSGT00910000148304	ENSGT00940000158163	ENSGT00390000002913	ENSGT00410000025695.b	ENSGT00940000158081	ENSGT00730000111231	ENSGT00390000003478	ENSGT01030000234515.b	ENSGT00940000162926	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b
Hominoidea	ANCESTRAL SPECIES		ENSGT00940000162643	ENSGT00390000008152.B.a	ENSGT00390000007227.b	ENSGT00390000000719	ENSGT00940000160464	ENSGT00390000004097.a	ENSGT00390000012198	ENSGT00410000025695.a.n.a	ENSGT00390000012913.a	ENSGT00940000160926	ENSGT00940000158649	ENSGT00390000017748	ENSGT00940000160753	ENSGT00390000014856.d	ENSGT00940000160699	ENSGT00390000000672.a.a ##22	ENSGT00910000148304	ENSGT00940000158163	ENSGT00390000002913	ENSGT00410000025695.b	ENSGT00940000158081	ENSGT00730000111231	ENSGT00390000003478	ENSGT01030000234515.b	ENSGT00940000162926	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b
Hominidae	ANCESTRAL SPECIES		ENSGT00940000162643	ENSGT00390000008152.B.a	ENSGT00390000007227.b	ENSGT00390000000719	ENSGT00940000160464	ENSGT00390000004097.a	ENSGT00390000012198	ENSGT00410000025695.a.n.a	ENSGT00390000012913.a	ENSGT00940000160926	ENSGT00940000158649	ENSGT00390000017748	ENSGT00940000160753	ENSGT00390000014856.d	ENSGT00940000160699	ENSGT00390000000672.a.a ##22	ENSGT00940000158163	ENSGT00390000002913	ENSGT00410000025695.b	ENSGT00940000158081	ENSGT00730000111231	ENSGT00390000003478	ENSGT01030000234515.b	ENSGT00940000162926	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00910000147684
Homo/Pan/Gorilla group	ANCESTRAL SPECIES		ENSGT00940000162643	ENSGT00390000008152.B.a	ENSGT00390000007227.b	ENSGT00390000000719	ENSGT00940000160464	ENSGT00390000004097.a	ENSGT00390000012198	ENSGT00410000025695.a.n.a	ENSGT00390000012913.a	ENSGT00940000160926	ENSGT00940000158649	ENSGT00390000017748	ENSGT00940000160753	ENSGT00390000014856.d	ENSGT00940000160699	ENSGT00390000000672.a.a ##22	ENSGT00940000158163	ENSGT00390000002913	ENSGT00410000025695.b	ENSGT00940000158081	ENSGT00730000111231	ENSGT00390000003478	ENSGT01030000234515.b	ENSGT00940000162926	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00910000147684
Homo/Pan group	ANCESTRAL SPECIES		ENSGT00940000162643	ENSGT00390000008152.B.a	ENSGT00390000007227.b	ENSGT00390000000719	ENSGT00940000160464	ENSGT00390000004097.a	ENSGT00390000012198	ENSGT00410000025695.a.n.a	ENSGT00390000012913.a	ENSGT00940000160926	ENSGT00940000158649	ENSGT00390000017748	ENSGT00940000160753	ENSGT00390000014856.d	ENSGT00940000160699	ENSGT00390000000672.a.a ##22	ENSGT00940000158163	ENSGT00390000002913	ENSGT00410000025695.b	ENSGT00940000158081	ENSGT00730000111231	ENSGT00390000003478	ENSGT01030000234515.b	ENSGT00940000162926	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00910000147684
Pan	ANCESTRAL SPECIES	14	ENSGT00940000162643	ENSGT00390000008152.B.a	ENSGT00390000007227.b	ENSGT00390000000719	ENSGT00940000160464	ENSGT00390000004097.a	ENSGT00390000012198	ENSGT00410000025695.a.n.a	ENSGT00390000012913.a	ENSGT00940000160926	ENSGT00940000158649	ENSGT00390000017748	ENSGT00940000160753	ENSGT00390000014856.d	ENSGT00940000160699	ENSGT00390000000672.a.a ##22	ENSGT00940000158163	ENSGT00390000002913	ENSGT00410000025695.b	ENSGT00940000158081	ENSGT00730000111231	ENSGT00390000003478	ENSGT01030000234515.b	ENSGT00940000162926	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00910000147684
Chimpanzee	MODERN SPECIES	10	PBX4 (ENSPTRG00000010744)	CILP2 (ENSPTRG00000010743)	YJEFN3 (ENSPTRG00000010742)	NDUFA13 (ENSPTRG00000010741)	ENSPTRG00000043712	GATAD2A (ENSPTRG00000010739)	MAU2 (ENSPTRG00000010738)	SUGP1 (ENSPTRG00000010737)	TM6SF2 (ENSPTRG00000010736)	HAPLN4 (ENSPTRG00000033676)	NCAN (ENSPTRG00000010734)	NR2C2AP (ENSPTRG00000010733)	RFXANK (ENSPTRG00000010732)	BORCS8 (ENSPTRG00000039907)	MEF2B (ENSPTRG00000010731)	TMEM161A (ENSPTRG00000010730) ##22	SLC25A42 (ENSPTRG00000010729)	ARMC6 (ENSPTRG00000010728)	SUGP2 (ENSPTRG00000010727)	HOMER3 (ENSPTRG00000010726)	DDX49 (ENSPTRG00000010725)	COPE (ENSPTRG00000010723)	CERS1 (ENSPTRG00000039869)	GDF1 (ENSPTRG00000050095)	UPF1 (ENSPTRG00000010721)	COMP (ENSPTRG00000010720)	CRTC1 (ENSPTRG00000010719)	KLHL26 (ENSPTRG00000010718)	TMEM59L (ENSPTRG00000010717)	ENSPTRG00000044633	CRLF1 (ENSPTRG00000010716)
Bonobo	MODERN SPECIES	10	PBX4 (ENSPPAG00000035891)	CILP2 (ENSPPAG00000035758)	YJEFN3 (ENSPPAG00000025286)	ENSPPAG00000016456	TSSK6 (ENSPPAG00000022354)	GATAD2A (ENSPPAG00000003218)	MAU2 (ENSPPAG00000032359)	SUGP1 (ENSPPAG00000037102)	TM6SF2 (ENSPPAG00000043499)	HAPLN4 (ENSPPAG00000013291)	NCAN (ENSPPAG00000003961)	NR2C2AP (ENSPPAG00000008303)	RFXANK (ENSPPAG00000032045)	BORCS8 (ENSPPAG00000033735)	MEF2B (ENSPPAG00000029747)	TMEM161A (ENSPPAG00000041901) ##22	SLC25A42 (ENSPPAG00000036060)	ARMC6 (ENSPPAG00000040716)	SUGP2 (ENSPPAG00000043787)	HOMER3 (ENSPPAG00000037113)	DDX49 (ENSPPAG00000035217)	COPE (ENSPPAG00000020767)	CERS1 (ENSPPAG00000036380)	UPF1 (ENSPPAG00000043884)	COMP (ENSPPAG00000040783)	CRTC1 (ENSPPAG00000003288)	KLHL26 (ENSPPAG00000039902)	TMEM59L (ENSPPAG00000029514)	CRLF1 (ENSPPAG00000041635)	ENSPPAG00000039468	REX1BD (ENSPPAG00000043331)
Human	MODERN SPECIES	10	YJEFN3 (ENSG00000250067)	ENSG00000258674	NDUFA13 (ENSG00000186010)	TSSK6 (ENSG00000178093)	GATAD2A (ENSG00000167491)	MAU2 (ENSG00000129933)	SUGP1 (ENSG00000105705)	TM6SF2 (ENSG00000213996)	HAPLN4 (ENSG00000187664)	NCAN (ENSG00000130287)	NR2C2AP (ENSG00000184162)	RFXANK (ENSG00000064490)	BORCS8 (ENSG00000254901)	BORCS8-MEF2B (ENSG00000064489)	MEF2B (ENSG00000213999)	TMEM161A (ENSG00000064545) ##22	SLC25A42 (ENSG00000181035)	ARMC6 (ENSG00000105676)	SUGP2 (ENSG00000064607)	HOMER3 (ENSG00000051128)	DDX49 (ENSG00000105671)	COPE (ENSG00000105669)	CERS1 (ENSG00000223802)	GDF1 (ENSG00000130283)	UPF1 (ENSG00000005007)	COMP (ENSG00000105664)	CRTC1 (ENSG00000105662)	KLHL26 (ENSG00000167487)	TMEM59L (ENSG00000105696)	REX1BD (ENSG00000006015)	CRLF1 (ENSG00000006016)
Gorilla	MODERN SPECIES	10	PBX4 (ENSGGOG00000006000)	CILP2 (ENSGGOG00000005993)	YJEFN3 (ENSGGOG00000005985)	NDUFA13 (ENSGGOG00000040690)	TSSK6 (ENSGGOG00000042656)	GATAD2A (ENSGGOG00000005973)	MAU2 (ENSGGOG00000002989)	SUGP1 (ENSGGOG00000002984)	TM6SF2 (ENSGGOG00000002983)	HAPLN4 (ENSGGOG00000002981)	NCAN (ENSGGOG00000002977)	NR2C2AP (ENSGGOG00000012536)	RFXANK (ENSGGOG00000012530)	BORCS8 (ENSGGOG00000044155)	MEF2B (ENSGGOG00000009730)	TMEM161A (ENSGGOG00000022481) ##22	SLC25A42 (ENSGGOG00000008113)	ARMC6 (ENSGGOG00000006708)	SUGP2 (ENSGGOG00000013540)	HOMER3 (ENSGGOG00000007011)	DDX49 (ENSGGOG00000037966)	COPE (ENSGGOG00000006987)	ENSGGOG00000025662	UPF1 (ENSGGOG00000002608)	COMP (ENSGGOG00000007897)	CRTC1 (ENSGGOG00000000987)	KLHL26 (ENSGGOG00000007063)	TMEM59L (ENSGGOG00000011271)	CRLF1 (ENSGGOG00000010973)	REX1BD (ENSGGOG00000026716)	ENSGGOG00000036627
Orangutan	MODERN SPECIES	10	PBX4 (ENSPPYG00000035724)	CILP2 (ENSPPYG00000009773)	YJEFN3 (ENSPPYG00000009772)	NDUFA13 (ENSPPYG00000036460)	TSSK6 (ENSPPYG00000009770)	GATAD2A (ENSPPYG00000009769)	MAU2 (ENSPPYG00000009767)	SUGP1 (ENSPPYG00000009766)	TM6SF2 (ENSPPYG00000009765)	HAPLN4 (ENSPPYG00000009764)	NCAN (ENSPPYG00000009763)	NR2C2AP (ENSPPYG00000009762)	RFXANK (ENSPPYG00000009761)	BORCS8 (ENSPPYG00000039532)	MEF2B (ENSPPYG00000009760)	TMEM161A (ENSPPYG00000009759) ##22	SLC25A42 (ENSPPYG00000009758)	ARMC6 (ENSPPYG00000009757)	SUGP2 (ENSPPYG00000009756)	HOMER3 (ENSPPYG00000035001)	DDX49 (ENSPPYG00000009755)	COPE (ENSPPYG00000009753)	CERS1 (ENSPPYG00000029471)	UPF1 (ENSPPYG00000009752)	COMP (ENSPPYG00000036755)	CRTC1 (ENSPPYG00000009751)	KLHL26 (ENSPPYG00000009750)	TMEM59L (ENSPPYG00000009749)	CRLF1 (ENSPPYG00000009748)	REX1BD (ENSPPYG00000009747)	UBA52 (ENSPPYG00000034989)
Gibbon	MODERN SPECIES		ENSNLEG00000018526	CILP2 (ENSNLEG00000006302)	YJEFN3 (ENSNLEG00000027046)	NDUFA13 (ENSNLEG00000006289)	TSSK6 (ENSNLEG00000019216)	GATAD2A (ENSNLEG00000006277)	MAU2 (ENSNLEG00000026855)	SUGP1 (ENSNLEG00000006236)	TM6SF2 (ENSNLEG00000006229)	HAPLN4 (ENSNLEG00000006225)	NCAN (ENSNLEG00000006221)	NR2C2AP (ENSNLEG00000006212)	RFXANK (ENSNLEG00000006200)	ENSNLEG00000006195	MEF2B (ENSNLEG00000006191)	ENSNLEG00000006186 ##22	SLC25A42 (ENSNLEG00000027898)	ENSNLEG00000006185	ARMC6 (ENSNLEG00000006169)	SUGP2 (ENSNLEG00000006162)	HOMER3 (ENSNLEG00000006154)	DDX49 (ENSNLEG00000006136)	COPE (ENSNLEG00000006090)	GDF1 (ENSNLEG00000006089)	UPF1 (ENSNLEG00000006062)	ENSNLEG00000005980	CRTC1 (ENSNLEG00000006083)	ENSNLEG00000006077	TMEM59L (ENSNLEG00000006075)	REX1BD (ENSNLEG00000027561)	ENSNLEG00000034752
Cercopithecidae	ANCESTRAL SPECIES	17	ENSGT00940000162643	ENSGT00390000008152.B.a	ENSGT00390000007227.b	ENSGT00390000000719	ENSGT00940000160464	ENSGT00390000004097.a.a	ENSGT00390000012198	ENSGT00410000025695.a.n.a	ENSGT00390000012913.a	ENSGT00940000160926	ENSGT00940000158649	ENSGT00390000017748	ENSGT00940000160753	ENSGT00390000014856.d	ENSGT00940000160699	ENSGT00390000000672.a.a ##22	ENSGT00910000148304	ENSGT00940000158163	ENSGT00390000002913	ENSGT00410000025695.b	ENSGT00940000158081	ENSGT00730000111231	ENSGT00390000003478	ENSGT01030000234515.b	ENSGT00940000162926	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b
Cercopithecinae	ANCESTRAL SPECIES	1	ENSGT00940000162643	ENSGT00390000008152.B.a	ENSGT00390000007227.b	ENSGT00390000000719	ENSGT00940000160464	ENSGT00390000004097.a.a	ENSGT00390000012198	ENSGT00410000025695.a.n.a	ENSGT00390000012913.a	ENSGT00940000160926	ENSGT00940000158649	ENSGT00390000017748	ENSGT00940000160753	ENSGT00390000014856.d	ENSGT00940000160699	ENSGT00390000000672.a.a ##22	ENSGT00910000148304	ENSGT00940000158163	ENSGT00390000002913	ENSGT00410000025695.b	ENSGT00940000158081	ENSGT00730000111231	ENSGT00390000003478	ENSGT01030000234515.b	ENSGT00940000162926	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b
Vervet Monkey	MODERN SPECIES	25	LPAR2 (ENSCSAG00000005063)	PBX4 (ENSCSAG00000005070)	CILP2 (ENSCSAG00000005072)	NDUFA13 (ENSCSAG00000005084)	TSSK6 (ENSCSAG00000018500)	GATAD2A (ENSCSAG00000005096)	MAU2 (ENSCSAG00000005122)	SUGP1 (ENSCSAG00000005148)	TM6SF2 (ENSCSAG00000005157)	HAPLN4 (ENSCSAG00000005162)	NCAN (ENSCSAG00000005190)	NR2C2AP (ENSCSAG00000005205)	RFXANK (ENSCSAG00000005210)	BORCS8 (ENSCSAG00000005214)	MEF2B (ENSCSAG00000005217)	TMEM161A (ENSCSAG00000005220) ##22	SLC25A42 (ENSCSAG00000005223)	ARMC6 (ENSCSAG00000005225)	SUGP2 (ENSCSAG00000005226)	HOMER3 (ENSCSAG00000005233)	DDX49 (ENSCSAG00000005251)	COPE (ENSCSAG00000005262)	CERS1 (ENSCSAG00000005267)	GDF1 (ENSCSAG00000005273)	UPF1 (ENSCSAG00000005276)	COMP (ENSCSAG00000005292)	CRTC1 (ENSCSAG00000005304)	KLHL26 (ENSCSAG00000005309)	TMEM59L (ENSCSAG00000005314)	CRLF1 (ENSCSAG00000005321)	REX1BD (ENSCSAG00000005329)
Cercopithecinae_a	ANCESTRAL SPECIES	3	ENSGT00940000162643	ENSGT00390000008152.B.a	ENSGT00390000007227.b	ENSGT00390000000719	ENSGT00940000160464	ENSGT00390000004097.a.a	ENSGT00390000012198	ENSGT00410000025695.a.n.a	ENSGT00390000012913.a	ENSGT00940000160926	ENSGT00940000158649	ENSGT00390000017748	ENSGT00940000160753	ENSGT00390000014856.d	ENSGT00940000160699	ENSGT00390000000672.a.a ##22	ENSGT00910000148304	ENSGT00940000158163	ENSGT00390000002913	ENSGT00410000025695.b	ENSGT00940000158081	ENSGT00730000111231	ENSGT00390000003478	ENSGT01030000234515.b	ENSGT00940000162926	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b
Macaca	ANCESTRAL SPECIES	21	ENSGT00940000162643	ENSGT00390000008152.B.a	ENSGT00390000007227.b	ENSGT00390000000719	ENSGT00940000160464	ENSGT00390000004097.a.a	ENSGT00390000012198	ENSGT00410000025695.a.n.a	ENSGT00390000012913.a	ENSGT00940000160926	ENSGT00940000158649	ENSGT00390000017748	ENSGT00940000160753	ENSGT00390000014856.d	ENSGT00940000160699	ENSGT00390000000672.a.a ##22	ENSGT00910000148304	ENSGT00940000158163	ENSGT00390000002913	ENSGT00410000025695.b	ENSGT00940000158081	ENSGT00730000111231	ENSGT00390000003478	ENSGT01030000234515.b	ENSGT00940000162926	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b
Pig-tailed macaque	MODERN SPECIES	76	ENSMNEG00000010618	CILP2 (ENSMNEG00000034197)	YJEFN3 (ENSMNEG00000037092)	NDUFA13 (ENSMNEG00000039567)	TSSK6 (ENSMNEG00000009045)	ENSMNEG00000043233	MAU2 (ENSMNEG00000034232)	SUGP1 (ENSMNEG00000042010)	TM6SF2 (ENSMNEG00000043588)	HAPLN4 (ENSMNEG00000034804)	NCAN (ENSMNEG00000029669)	RFXANK (ENSMNEG00000025165)	NR2C2AP (ENSMNEG00000037479)	BORCS8 (ENSMNEG00000033374)	MEF2B (ENSMNEG00000041102)	TMEM161A (ENSMNEG00000027465) ##22	SLC25A42 (ENSMNEG00000043911)	ENSMNEG00000030397	ARMC6 (ENSMNEG00000043051)	SUGP2 (ENSMNEG00000043062)	HOMER3 (ENSMNEG00000042042)	DDX49 (ENSMNEG00000029654)	COPE (ENSMNEG00000031787)	GDF1 (ENSMNEG00000041111)	UPF1 (ENSMNEG00000000046)	COMP (ENSMNEG00000037024)	CRTC1 (ENSMNEG00000021530)	KLHL26 (ENSMNEG00000045346)	TMEM59L (ENSMNEG00000044854)	CRLF1 (ENSMNEG00000033002)	REX1BD (ENSMNEG00000045352)
Macaca_a	ANCESTRAL SPECIES	1	ENSGT00950000183110.a	ENSGT01050000244941.B.c	ENSGT00940000162643	ENSGT00390000008152.B.a	ENSGT00390000007227.b	ENSGT00940000160464	ENSGT00390000004097.a.a	ENSGT00390000012198	ENSGT00410000025695.a.n.a	ENSGT00390000012913.a	ENSGT00940000160926	ENSGT00940000158649	ENSGT00390000017748	ENSGT00940000160753	ENSGT00940000160699	ENSGT00390000000672.a.a ##22	ENSGT00940000158163	ENSGT00390000002913	ENSGT00410000025695.b	ENSGT00940000158081	ENSGT00730000111231	ENSGT00390000003478	ENSGT01030000234515.b	ENSGT00940000162926	ENSGT00940000157413	ENSGT01100000263493.a.a.a.b.a.a.b.a.a.a.b	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b
Rhesus	MODERN SPECIES	10	GMIP (ENSMMUG00000003036)	LPAR2 (ENSMMUG00000000654)	PBX4 (ENSMMUG00000048108)	CILP2 (ENSMMUG00000011352)	YJEFN3 (ENSMMUG00000011351)	TSSK6 (ENSMMUG00000049072)	GATAD2A (ENSMMUG00000003164)	MAU2 (ENSMMUG00000008931)	SUGP1 (ENSMMUG00000028834)	TM6SF2 (ENSMMUG00000008576)	HAPLN4 (ENSMMUG00000008578)	NCAN (ENSMMUG00000062498)	NR2C2AP (ENSMMUG00000010723)	RFXANK (ENSMMUG00000010722)	BORCS8 (ENSMMUG00000018368)	TMEM161A (ENSMMUG00000018367) ##22	SLC25A42 (ENSMMUG00000019669)	ARMC6 (ENSMMUG00000019668)	SUGP2 (ENSMMUG00000019665)	HOMER3 (ENSMMUG00000023294)	DDX49 (ENSMMUG00000023293)	COPE (ENSMMUG00000023291)	CERS1 (ENSMMUG00000059247)	GDF1 (ENSMMUG00000023290)	UPF1 (ENSMMUG00000023286)	ENSMMUG00000056644	COMP (ENSMMUG00000006511)	CRTC1 (ENSMMUG00000006509)	KLHL26 (ENSMMUG00000064204)	CRLF1 (ENSMMUG00000060102)	TMEM59L (ENSMMUG00000009988)
Crab-eating macaque	MODERN SPECIES	10	LPAR2 (ENSMFAG00000040780)	GMIP (ENSMFAG00000046087)	PBX4 (ENSMFAG00000031948)	CILP2 (ENSMFAG00000064577)	YJEFN3 (ENSMFAG00000011503)	ENSMFAG00000002152	MAU2 (ENSMFAG00000041829)	SUGP1 (ENSMFAG00000031157)	TM6SF2 (ENSMFAG00000006917)	HAPLN4 (ENSMFAG00000029816)	NCAN (ENSMFAG00000043588)	NR2C2AP (ENSMFAG00000042311)	RFXANK (ENSMFAG00000003753)	MEF2B (ENSMFAG00000032755)	SLC25A42 (ENSMFAG00000039473)	TMEM161A (ENSMFAG00000043553) ##22	ARMC6 (ENSMFAG00000000505)	SUGP2 (ENSMFAG00000040352)	HOMER3 (ENSMFAG00000031509)	DDX49 (ENSMFAG00000044697)	COPE (ENSMFAG00000038870)	GDF1 (ENSMFAG00000064570)	CERS1 (ENSMFAG00000044990)	ENSMFAG00000065281	ENSMFAG00000037748	ENSMFAG00000052968	ENSMFAG00000004008	CRTC1 (ENSMFAG00000045375)	KLHL26 (ENSMFAG00000062634)	ENSMFAG00000044055	ENSMFAG00000045477
Cercopithecinae_b	ANCESTRAL SPECIES	13	ENSGT00940000162643	ENSGT00390000008152.B.a	ENSGT00390000007227.b	ENSGT00390000000719	ENSGT00940000160464	ENSGT00390000004097.a.a	ENSGT00390000012198	ENSGT00410000025695.a.n.a	ENSGT00390000012913.a	ENSGT00940000160926	ENSGT00940000158649	ENSGT00390000017748	ENSGT00940000160753	ENSGT00390000014856.d	ENSGT00940000160699	ENSGT00390000000672.a.a ##22	ENSGT00940000158163	ENSGT00390000002913	ENSGT00410000025695.b	ENSGT00940000158081	ENSGT00730000111231	ENSGT00390000003478	ENSGT01030000234515.b	ENSGT00940000162926	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00390000011631
Olive baboon	MODERN SPECIES	12	PBX4 (ENSPANG00000004463)	CILP2 (ENSPANG00000002530)	YJEFN3 (ENSPANG00000015322)	NDUFA13 (ENSPANG00000001628)	TSSK6 (ENSPANG00000005919)	GATAD2A (ENSPANG00000011632)	MAU2 (ENSPANG00000002876)	SUGP1 (ENSPANG00000014398)	TM6SF2 (ENSPANG00000017375)	HAPLN4 (ENSPANG00000004385)	NCAN (ENSPANG00000017942)	NR2C2AP (ENSPANG00000017708)	RFXANK (ENSPANG00000011633)	BORCS8 (ENSPANG00000034354)	MEF2B (ENSPANG00000023043)	TMEM161A (ENSPANG00000023920) ##22	SLC25A42 (ENSPANG00000004441)	ARMC6 (ENSPANG00000002531)	SUGP2 (ENSPANG00000004442)	HOMER3 (ENSPANG00000004386)	DDX49 (ENSPANG00000003161)	COPE (ENSPANG00000002532)	CERS1 (ENSPANG00000005280)	GDF1 (ENSPANG00000004387)	UPF1 (ENSPANG00000008847)	COMP (ENSPANG00000004388)	CRTC1 (ENSPANG00000014162)	KLHL26 (ENSPANG00000023921)	TMEM59L (ENSPANG00000018010)	CRLF1 (ENSPANG00000011399)	REX1BD (ENSPANG00000032734)
Cercopithecinae_d	ANCESTRAL SPECIES	8	ENSGT00940000162643	ENSGT00390000008152.B.a	ENSGT00390000007227.b	ENSGT00390000000719	ENSGT00940000160464	ENSGT00390000004097.a.a	ENSGT00390000012198	ENSGT00410000025695.a.n.a	ENSGT00390000012913.a	ENSGT00940000160926	ENSGT00940000158649	ENSGT00390000017748	ENSGT00940000160753	ENSGT00390000014856.d	ENSGT00940000160699	ENSGT00390000000672.a.a ##22	ENSGT00940000158163	ENSGT00390000002913	ENSGT00410000025695.b	ENSGT00940000158081	ENSGT00730000111231	ENSGT00390000003478	ENSGT01030000234515.b	ENSGT00940000162926	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00390000011631
Drill	MODERN SPECIES	160	ENSMLEG00000038352	PBX4 (ENSMLEG00000028081)	CILP2 (ENSMLEG00000038834)	NDUFA13 (ENSMLEG00000027225)	TSSK6 (ENSMLEG00000010320)	GATAD2A (ENSMLEG00000040547)	MAU2 (ENSMLEG00000035371)	SUGP1 (ENSMLEG00000043364)	TM6SF2 (ENSMLEG00000027647)	HAPLN4 (ENSMLEG00000043866)	NCAN (ENSMLEG00000035960)	NR2C2AP (ENSMLEG00000026610)	RFXANK (ENSMLEG00000007628)	BORCS8 (ENSMLEG00000036175)	MEF2B (ENSMLEG00000002780)	TMEM161A (ENSMLEG00000041570) ##22	SLC25A42 (ENSMLEG00000038599)	ARMC6 (ENSMLEG00000039585)	SUGP2 (ENSMLEG00000036719)	HOMER3 (ENSMLEG00000042234)	DDX49 (ENSMLEG00000042550)	COPE (ENSMLEG00000042923)	CERS1 (ENSMLEG00000020659)	UPF1 (ENSMLEG00000028404)	COMP (ENSMLEG00000028753)	CRTC1 (ENSMLEG00000044311)	KLHL26 (ENSMLEG00000038620)	TMEM59L (ENSMLEG00000032687)	CRLF1 (ENSMLEG00000041126)	REX1BD (ENSMLEG00000041099)	UBA52 (ENSMLEG00000038811)
Sooty mangabey	MODERN SPECIES	347	PBX4 (ENSCATG00000035336)	CILP2 (ENSCATG00000040476)	YJEFN3 (ENSCATG00000037712)	NDUFA13 (ENSCATG00000038956)	TSSK6 (ENSCATG00000003439)	ENSCATG00000035199	MAU2 (ENSCATG00000015302)	SUGP1 (ENSCATG00000033059)	TM6SF2 (ENSCATG00000038371)	HAPLN4 (ENSCATG00000033215)	NCAN (ENSCATG00000033037)	NR2C2AP (ENSCATG00000035313)	RFXANK (ENSCATG00000032949)	BORCS8 (ENSCATG00000034039)	MEF2B (ENSCATG00000031174)	TMEM161A (ENSCATG00000036119) ##22	SLC25A42 (ENSCATG00000035155)	ARMC6 (ENSCATG00000032065)	SUGP2 (ENSCATG00000029755)	HOMER3 (ENSCATG00000036483)	DDX49 (ENSCATG00000032577)	COPE (ENSCATG00000038467)	CERS1 (ENSCATG00000033850)	GDF1 (ENSCATG00000033208)	UPF1 (ENSCATG00000040306)	ENSCATG00000029785	COMP (ENSCATG00000021027)	CRTC1 (ENSCATG00000037923)	KLHL26 (ENSCATG00000040338)	TMEM59L (ENSCATG00000031976)	CRLF1 (ENSCATG00000031612)
Rhinopithecus	ANCESTRAL SPECIES		ENSGT00940000162643	ENSGT00390000008152.B.a	ENSGT00390000007227.b	ENSGT00390000000719	ENSGT00940000160464	ENSGT00390000004097.a.a	ENSGT00390000012198	ENSGT00410000025695.a.n.a	ENSGT00390000012913.a	ENSGT00940000160926	ENSGT00940000158649	ENSGT00390000017748	ENSGT00940000160753	ENSGT00390000014856.d	ENSGT00940000160699	ENSGT00390000000672.a.a ##22	ENSGT00940000158163	ENSGT00390000002913	ENSGT00410000025695.b	ENSGT00940000158081	ENSGT00730000111231	ENSGT00390000003478	ENSGT01030000234515.b	ENSGT00940000162926	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00390000011631
Golden snub-nosed monkey	MODERN SPECIES	2586	PBX4 (ENSRROG00000033089)	CILP2 (ENSRROG00000044306)	YJEFN3 (ENSRROG00000040358)	NDUFA13 (ENSRROG00000043641)	TSSK6 (ENSRROG00000027240)	ENSRROG00000031855	MAU2 (ENSRROG00000032649)	SUGP1 (ENSRROG00000030048)	TM6SF2 (ENSRROG00000036675)	HAPLN4 (ENSRROG00000029649)	NCAN (ENSRROG00000037872)	NR2C2AP (ENSRROG00000033994)	RFXANK (ENSRROG00000028283)	BORCS8 (ENSRROG00000045680)	MEF2B (ENSRROG00000033740)	TMEM161A (ENSRROG00000024629) ##22	SLC25A42 (ENSRROG00000040352)	ARMC6 (ENSRROG00000034739)	SUGP2 (ENSRROG00000029264)	HOMER3 (ENSRROG00000038822)	DDX49 (ENSRROG00000032460)	COPE (ENSRROG00000032396)	CERS1 (ENSRROG00000038529)	GDF1 (ENSRROG00000041769)	UPF1 (ENSRROG00000040935)	COMP (ENSRROG00000043878)	CRTC1 (ENSRROG00000039912)	KLHL26 (ENSRROG00000030821)	TMEM59L (ENSRROG00000024021)	CRLF1 (ENSRROG00000030939)	REX1BD (ENSRROG00000030965)
Black snub-nosed monkey	MODERN SPECIES	1576	PBX4 (ENSRBIG00000043379)	CILP2 (ENSRBIG00000033619)	YJEFN3 (ENSRBIG00000044837)	NDUFA13 (ENSRBIG00000029310)	TSSK6 (ENSRBIG00000020631)	ENSRBIG00000029752	MAU2 (ENSRBIG00000036077)	SUGP1 (ENSRBIG00000035555)	TM6SF2 (ENSRBIG00000035648)	HAPLN4 (ENSRBIG00000028696)	NCAN (ENSRBIG00000028711)	RFXANK (ENSRBIG00000027696)	NR2C2AP (ENSRBIG00000035480)	BORCS8 (ENSRBIG00000044655)	MEF2B (ENSRBIG00000037482)	TMEM161A (ENSRBIG00000035635) ##22	SLC25A42 (ENSRBIG00000027977)	ENSRBIG00000034545	ARMC6 (ENSRBIG00000038109)	SUGP2 (ENSRBIG00000020354)	HOMER3 (ENSRBIG00000038778)	DDX49 (ENSRBIG00000030758)	COPE (ENSRBIG00000040843)	CERS1 (ENSRBIG00000036984)	UPF1 (ENSRBIG00000013894)	COMP (ENSRBIG00000006193)	CRTC1 (ENSRBIG00000036709)	KLHL26 (ENSRBIG00000023916)
Platyrrhini	ANCESTRAL SPECIES	25	ENSGT00940000162643	ENSGT00390000008152.B.a	ENSGT00390000007227.b	ENSGT00390000000719	ENSGT00940000160464	ENSGT00390000004097.a	ENSGT00390000012198	ENSGT00410000025695.a	ENSGT00390000012913.a	ENSGT00940000160926	ENSGT00940000158649	ENSGT00390000017748	ENSGT00940000160753	ENSGT00390000014856	ENSGT00940000160699	ENSGT00390000000672.a.a ##22	ENSGT00940000158163	ENSGT00390000002913	ENSGT00410000025695.b	ENSGT00940000158081.g.a	ENSGT00730000111231	ENSGT00390000003478	ENSGT01030000234515.b	ENSGT00940000162926	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00390000011631
Cebidae	ANCESTRAL SPECIES	8	ENSGT00940000162643	ENSGT00390000008152.B.a	ENSGT00390000007227.b	ENSGT00390000000719	ENSGT00940000160464	ENSGT00390000004097.a	ENSGT00390000012198	ENSGT00410000025695.a	ENSGT00390000012913.a	ENSGT00940000160926	ENSGT00940000158649	ENSGT00390000017748	ENSGT00940000160753	ENSGT00390000014856	ENSGT00940000160699	ENSGT00390000000672.a.a ##22	ENSGT00940000158163	ENSGT00390000002913	ENSGT00410000025695.b	ENSGT00940000158081.g.a	ENSGT00730000111231	ENSGT00390000003478	ENSGT01030000234515.b	ENSGT00940000162926	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00390000011631
Marmoset	MODERN SPECIES	14	ENSCJAG00000073644	CILP2 (ENSCJAG00000005650)	YJEFN3 (ENSCJAG00000005654)	ENSCJAG00000043112	GATAD2A (ENSCJAG00000040704)	MAU2 (ENSCJAG00000039088)	SUGP1 (ENSCJAG00000005755)	TM6SF2 (ENSCJAG00000039656)	HAPLN4 (ENSCJAG00000073329)	ENSCJAG00000070942	NCAN (ENSCJAG00000008512)	NR2C2AP (ENSCJAG00000019782)	RFXANK (ENSCJAG00000019775)	BORCS8 (ENSCJAG00000046526)	MEF2B (ENSCJAG00000019767)	TMEM161A (ENSCJAG00000019759) ##22	SLC25A42 (ENSCJAG00000044017)	ARMC6 (ENSCJAG00000019747)	SUGP2 (ENSCJAG00000019714)	HOMER3 (ENSCJAG00000080144)	DDX49 (ENSCJAG00000042114)	COPE (ENSCJAG00000019706)	CERS1 (ENSCJAG00000019660)	UPF1 (ENSCJAG00000019627)	COMP (ENSCJAG00000001175)	CRTC1 (ENSCJAG00000007421)	KLHL26 (ENSCJAG00000007445)	TMEM59L (ENSCJAG00000007447)	CRLF1 (ENSCJAG00000007427)	ENSCJAG00000007459	ENSCJAG00000053720
Cebidae_a	ANCESTRAL SPECIES	48	ENSGT00940000162643	ENSGT00390000008152.B.a	ENSGT00390000007227.b	ENSGT00390000000719	ENSGT00940000160464	ENSGT00390000004097.a	ENSGT00390000012198	ENSGT00410000025695.a	ENSGT00390000012913.a	ENSGT00940000160926	ENSGT00940000158649	ENSGT00390000017748	ENSGT00940000160753	ENSGT00390000014856	ENSGT00940000160699	ENSGT00390000000672.a.a ##22	ENSGT00940000158163	ENSGT00390000002913	ENSGT00410000025695.b	ENSGT00940000158081.g.a	ENSGT00730000111231	ENSGT00390000003478	ENSGT01030000234515.b	ENSGT00940000162926	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00390000011631
Capuchin	DUPLICATION
Capuchin	DUPLICATION
Capuchin	MODERN SPECIES	1006																ENSCCAG00000027007 ##22
Capuchin	MODERN SPECIES	1083																ENSCCAG00000022153 ##22
Capuchin	MODERN SPECIES	280	PBX4 (ENSCCAG00000028260)	CILP2 (ENSCCAG00000025104)	YJEFN3 (ENSCCAG00000036770)	ENSCCAG00000027170	TSSK6 (ENSCCAG00000019676)	GATAD2A (ENSCCAG00000036212)	MAU2 (ENSCCAG00000031923)	SUGP1 (ENSCCAG00000024177)	TM6SF2 (ENSCCAG00000030646)	HAPLN4 (ENSCCAG00000030280)	NCAN (ENSCCAG00000029973)	NR2C2AP (ENSCCAG00000034992)	RFXANK (ENSCCAG00000034756)	BORCS8 (ENSCCAG00000026464)	MEF2B (ENSCCAG00000025516)	ENSCCAG00000034387 ##22	SLC25A42 (ENSCCAG00000028461)	ARMC6 (ENSCCAG00000027993)	SUGP2 (ENSCCAG00000023178)	HOMER3 (ENSCCAG00000024819)	DDX49 (ENSCCAG00000036092)	COPE (ENSCCAG00000036516)	CERS1 (ENSCCAG00000033033)	GDF1 (ENSCCAG00000027600)	UPF1 (ENSCCAG00000032175)	COMP (ENSCCAG00000032561)	CRTC1 (ENSCCAG00000023281)	KLHL26 (ENSCCAG00000019068)	TMEM59L (ENSCCAG00000030314)	CRLF1 (ENSCCAG00000027668)	REX1BD (ENSCCAG00000025734)
Bolivian squirrel monkey	MODERN SPECIES	199	ENSSBOG00000031282	CILP2 (ENSSBOG00000026211)	YJEFN3 (ENSSBOG00000021793)	NDUFA13 (ENSSBOG00000019126)	TSSK6 (ENSSBOG00000018199)	GATAD2A (ENSSBOG00000029481)	MAU2 (ENSSBOG00000034577)	SUGP1 (ENSSBOG00000020160)	TM6SF2 (ENSSBOG00000031897)	HAPLN4 (ENSSBOG00000028603)	NCAN (ENSSBOG00000033005)	NR2C2AP (ENSSBOG00000031337)	RFXANK (ENSSBOG00000022019)	BORCS8 (ENSSBOG00000022945)	MEF2B (ENSSBOG00000024550)	TMEM161A (ENSSBOG00000031066) ##22	SLC25A42 (ENSSBOG00000024288)	ENSSBOG00000024227	SUGP2 (ENSSBOG00000020629)	HOMER3 (ENSSBOG00000030722)	DDX49 (ENSSBOG00000035812)	COPE (ENSSBOG00000014113)	CERS1 (ENSSBOG00000000038)	GDF1 (ENSSBOG00000035053)	UPF1 (ENSSBOG00000023632)	COMP (ENSSBOG00000003799)	CRTC1 (ENSSBOG00000032842)	KLHL26 (ENSSBOG00000031453)	TMEM59L (ENSSBOG00000019651)	CRLF1 (ENSSBOG00000029563)	REX1BD (ENSSBOG00000030684)
Mas night monkey	MODERN SPECIES	1353	PBX4 (ENSANAG00000032208)	CILP2 (ENSANAG00000024220)	YJEFN3 (ENSANAG00000026506)	NDUFA13 (ENSANAG00000033597)	TSSK6 (ENSANAG00000020096)	GATAD2A (ENSANAG00000038065)	MAU2 (ENSANAG00000026794)	SUGP1 (ENSANAG00000028538)	TM6SF2 (ENSANAG00000034245)	HAPLN4 (ENSANAG00000024057)	ENSANAG00000035988	NR2C2AP (ENSANAG00000035166)	RFXANK (ENSANAG00000025466)	BORCS8 (ENSANAG00000034161)	MEF2B (ENSANAG00000020769)	TMEM161A (ENSANAG00000034160) ##22	SLC25A42 (ENSANAG00000030310)	ARMC6 (ENSANAG00000025554)	SUGP2 (ENSANAG00000027159)	ENSANAG00000020793	DDX49 (ENSANAG00000031415)	COPE (ENSANAG00000018604)	GDF1 (ENSANAG00000037936)	UPF1 (ENSANAG00000024107)	COMP (ENSANAG00000023447)	ENSANAG00000030890	KLHL26 (ENSANAG00000022024)	TMEM59L (ENSANAG00000037189)	CRLF1 (ENSANAG00000022571)	REX1BD (ENSANAG00000031851)	UBA52 (ENSANAG00000037329)
Tarsier	MODERN SPECIES	4854																TMEM161A (ENSTSYG00000005147) ##22
Strepsirrhini	ANCESTRAL SPECIES	33	ENSGT00940000162643	ENSGT00390000008152.B.a	ENSGT00390000007227.b	ENSGT00390000000719	ENSGT00940000160464	ENSGT00390000004097.a	ENSGT00390000012198	ENSGT00410000025695.a.l	ENSGT00390000012913.a	ENSGT00940000160926	ENSGT00940000158649	ENSGT00390000017748	ENSGT00940000160753	ENSGT00390000014856	ENSGT00940000160699	ENSGT00390000000672.a.a ##22	ENSGT00940000158163	ENSGT00390000002913	ENSGT00410000025695.b	ENSGT00940000158081	ENSGT00730000111231	ENSGT00390000003478	ENSGT01030000234515.b	ENSGT00940000162926	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00390000011631
Lemuriformes	ANCESTRAL SPECIES	45	ENSGT00940000162643	ENSGT00390000008152.B.a	ENSGT00390000007227.b	ENSGT00390000000719	ENSGT00940000160464	ENSGT00390000004097.a	ENSGT00390000012198	ENSGT00410000025695.a.l	ENSGT00390000012913.a	ENSGT00940000160926	ENSGT00940000158649	ENSGT00390000017748	ENSGT00940000160753	ENSGT00390000014856	ENSGT00940000160699	ENSGT00390000000672.a.a ##22	ENSGT00940000158163	ENSGT00390000002913	ENSGT00410000025695.b	ENSGT00940000158081	ENSGT00730000111231	ENSGT00390000003478	ENSGT01030000234515.b	ENSGT00940000162926	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00390000011631
Lemuriformes_a	ANCESTRAL SPECIES	65	ENSGT00940000162643	ENSGT00390000008152.B.a	ENSGT00390000007227.b	ENSGT00390000000719	ENSGT00940000160464	ENSGT00390000004097.a	ENSGT00390000012198	ENSGT00410000025695.a.l	ENSGT00390000012913.a	ENSGT00940000160926	ENSGT00940000158649	ENSGT00390000017748	ENSGT00940000160753	ENSGT00390000014856	ENSGT00940000160699	ENSGT00390000000672.a.a ##22	ENSGT00940000158163	ENSGT00390000002913	ENSGT00410000025695.b	ENSGT00940000158081	ENSGT00730000111231	ENSGT00390000003478	ENSGT01030000234515.b	ENSGT00940000162926	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00390000011631
Coquerels sifaka	MODERN SPECIES	589	PBX4 (ENSPCOG00000016827)	CILP2 (ENSPCOG00000016451)	YJEFN3 (ENSPCOG00000028351)	NDUFA13 (ENSPCOG00000015544)	TSSK6 (ENSPCOG00000012813)	GATAD2A (ENSPCOG00000019794)	MAU2 (ENSPCOG00000020236)	SUGP1 (ENSPCOG00000017524)	TM6SF2 (ENSPCOG00000024818)	HAPLN4 (ENSPCOG00000023645)	NCAN (ENSPCOG00000015066)	NR2C2AP (ENSPCOG00000023079)	RFXANK (ENSPCOG00000019783)	BORCS8 (ENSPCOG00000016887)	MEF2B (ENSPCOG00000024251)	TMEM161A (ENSPCOG00000012683) ##22	SLC25A42 (ENSPCOG00000026001)	ARMC6 (ENSPCOG00000017481)	SUGP2 (ENSPCOG00000016042)	HOMER3 (ENSPCOG00000014798)	DDX49 (ENSPCOG00000024973)	COPE (ENSPCOG00000015758)	GDF1 (ENSPCOG00000015607)	UPF1 (ENSPCOG00000023813)	COMP (ENSPCOG00000023117)	CRTC1 (ENSPCOG00000027092)	KLHL26 (ENSPCOG00000028544)	TMEM59L (ENSPCOG00000026454)	CRLF1 (ENSPCOG00000013640)	REX1BD (ENSPCOG00000014515)	ENSPCOG00000012784
Greater bamboo lemur	MODERN SPECIES	392	ENSPSMG00000002390	CILP2 (ENSPSMG00000002378)	YJEFN3 (ENSPSMG00000002364)	NDUFA13 (ENSPSMG00000002354)	TSSK6 (ENSPSMG00000002343)	GATAD2A (ENSPSMG00000002335)	MAU2 (ENSPSMG00000002309)	SUGP1 (ENSPSMG00000002255)	TM6SF2 (ENSPSMG00000002208)	HAPLN4 (ENSPSMG00000002199)	NCAN (ENSPSMG00000002186)	NR2C2AP (ENSPSMG00000002131)	RFXANK (ENSPSMG00000002047)	BORCS8 (ENSPSMG00000002009)	MEF2B (ENSPSMG00000001996)	TMEM161A (ENSPSMG00000001938) ##22	SLC25A42 (ENSPSMG00000001893)	ARMC6 (ENSPSMG00000001861)	SUGP2 (ENSPSMG00000001742)	HOMER3 (ENSPSMG00000001606)	DDX49 (ENSPSMG00000001520)	COPE (ENSPSMG00000001405)	CERS1 (ENSPSMG00000001173)	GDF1 (ENSPSMG00000001150)	UPF1 (ENSPSMG00000001054)	COMP (ENSPSMG00000000819)	CRTC1 (ENSPSMG00000000672)	KLHL26 (ENSPSMG00000000655)	TMEM59L (ENSPSMG00000000639)	CRLF1 (ENSPSMG00000000604)	REX1BD (ENSPSMG00000000580)
Mouse lemur	MODERN SPECIES	16	MYO1F (ENSMICG00000006198)	ENSMICG00000006214	ZNF653 (ENSMICG00000034400)	ENSMICG00000045642	HOMER3 (ENSMICG00000038004)	ENSMICG00000003656	DDX49 (ENSMICG00000003640)	COPE (ENSMICG00000003630)	TM6SF2 (ENSMICG00000037360)	HAPLN4 (ENSMICG00000032572)	NCAN (ENSMICG00000036837)	NR2C2AP (ENSMICG00000003978)	RFXANK (ENSMICG00000003972)	BORCS8 (ENSMICG00000027617)	MEF2B (ENSMICG00000000439)	TMEM161A (ENSMICG00000034501) ##22	SLC25A42 (ENSMICG00000042876)	ARMC6 (ENSMICG00000003677)	SUGP2 (ENSMICG00000003666)	ZNF558 (ENSMICG00000027068)	PALM (ENSMICG00000044367)	MISP (ENSMICG00000034580)	PTBP1 (ENSMICG00000007131)	PLPPR3 (ENSMICG00000031756)	ENSMICG00000028531	FABP2 (ENSMICG00000032838)	PDE5A (ENSMICG00000002964)	MAD2L1 (ENSMICG00000043113)	PRDM5 (ENSMICG00000001459)	NDNF (ENSMICG00000030202)	TNIP3 (ENSMICG00000038352)
Bushbaby	MODERN SPECIES	220	PBX4 (ENSOGAG00000007450)	CILP2 (ENSOGAG00000028615)	YJEFN3 (ENSOGAG00000033582)	NDUFA13 (ENSOGAG00000007445)	TSSK6 (ENSOGAG00000027271)	GATAD2A (ENSOGAG00000007442)	MAU2 (ENSOGAG00000009979)	ENSOGAG00000009975	TM6SF2 (ENSOGAG00000028833)	HAPLN4 (ENSOGAG00000009972)	NCAN (ENSOGAG00000010954)	NR2C2AP (ENSOGAG00000033463)	RFXANK (ENSOGAG00000010950)	BORCS8 (ENSOGAG00000028427)	MEF2B (ENSOGAG00000001694)	TMEM161A (ENSOGAG00000015720) ##22	SLC25A42 (ENSOGAG00000007251)	ARMC6 (ENSOGAG00000007536)	SUGP2 (ENSOGAG00000024068)	HOMER3 (ENSOGAG00000008261)	DDX49 (ENSOGAG00000008259)	COPE (ENSOGAG00000031639)	CERS1 (ENSOGAG00000033679)	GDF1 (ENSOGAG00000012872)	UPF1 (ENSOGAG00000012866)	COMP (ENSOGAG00000004930)	CRTC1 (ENSOGAG00000004927)	KLHL26 (ENSOGAG00000004926)	TMEM59L (ENSOGAG00000004923)	CRLF1 (ENSOGAG00000004920)	REX1BD (ENSOGAG00000033304)
Euarchontoglires_A	ANCESTRAL SPECIES	20	ENSGT00390000008152.B.a	ENSGT00390000007227.b	ENSGT00390000000719	ENSGT00940000160464	ENSGT01090000261752	ENSGT00390000004097.a	ENSGT00390000012198	ENSGT00410000025695.a	ENSGT00390000012913.a	ENSGT00940000160926	ENSGT00940000158649	ENSGT00390000017748	ENSGT00940000160753	ENSGT00390000014856	ENSGT00940000160699	ENSGT00390000000672.a.a ##22	ENSGT00940000158163	ENSGT00390000002913	ENSGT00410000025695.b	ENSGT00940000158081	ENSGT00730000111231	ENSGT00390000003478	ENSGT01030000234515.b	ENSGT00940000162926	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00390000011631
Glires	ANCESTRAL SPECIES	21	ENSGT00390000008152.B.a	ENSGT00390000007227.b	ENSGT00390000000719	ENSGT00940000160464	ENSGT01090000261752	ENSGT00390000004097.a	ENSGT00390000012198	ENSGT00410000025695.a	ENSGT00390000012913.a	ENSGT00940000160926	ENSGT00940000158649	ENSGT00390000017748	ENSGT00940000160753	ENSGT00390000014856	ENSGT00940000160699	ENSGT00390000000672.a.a ##22	ENSGT00940000158163	ENSGT00390000002913	ENSGT00410000025695.b	ENSGT00940000158081	ENSGT00730000111231	ENSGT00390000003478	ENSGT01030000234515.b	ENSGT00940000162926	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00390000011631
Rodentia	ANCESTRAL SPECIES	17	ENSGT00940000162643	ENSGT00390000008152.B.a	ENSGT00390000007227.b	ENSGT00390000000719	ENSGT00940000160464	ENSGT00390000004097.a	ENSGT00390000012198	ENSGT00410000025695.a	ENSGT00390000012913.a	ENSGT00940000160926	ENSGT00940000158649	ENSGT00390000017748	ENSGT00940000160753	ENSGT00390000014856	ENSGT00940000160699	ENSGT00390000000672.a.a ##22	ENSGT00940000158163	ENSGT00390000002913	ENSGT00410000025695.b	ENSGT00940000158081	ENSGT00730000111231	ENSGT00390000003478	ENSGT01030000234515.b	ENSGT00940000162926	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00390000011631
Rodentia_B	ANCESTRAL SPECIES	37	ENSGT00940000162643	ENSGT00390000008152.B.a	ENSGT00390000007227.b	ENSGT00390000000719	ENSGT00940000160464	ENSGT00390000004097.a	ENSGT00390000012198	ENSGT00410000025695.a	ENSGT00390000012913.a	ENSGT00940000160926	ENSGT00940000158649	ENSGT00390000017748	ENSGT00940000160753	ENSGT00390000014856	ENSGT00940000160699	ENSGT00390000000672.a.a ##22	ENSGT00940000158163	ENSGT00390000002913	ENSGT00410000025695.b	ENSGT00940000158081	ENSGT00730000111231	ENSGT00390000003478	ENSGT01030000234515.b	ENSGT00940000162926	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00390000011631
Kangaroo rat	MODERN SPECIES	427	ENSDORG00000027508	ENSDORG00000012240	Atp13a1 (ENSDORG00000005185)	Gmip (ENSDORG00000005179)	Lpar2 (ENSDORG00000023437)	Tssk6 (ENSDORG00000008538)	Gatad2a (ENSDORG00000008536)	Mau2 (ENSDORG00000004918)	ENSDORG00000024315	Tm6sf2 (ENSDORG00000004913)	Hapln4 (ENSDORG00000004912)	Nr2c2ap (ENSDORG00000001440)	Rfxank (ENSDORG00000001449)	Borcs8 (ENSDORG00000027906)	ENSDORG00000011003	ENSDORG00000010999 ##22	Slc25a42 (ENSDORG00000010998)	ENSDORG00000004418	Sugp2 (ENSDORG00000011519)	ENSDORG00000004302	Ddx49 (ENSDORG00000004301)	Cope (ENSDORG00000004298)	ENSDORG00000023557	Upf1 (ENSDORG00000009984)	Comp (ENSDORG00000027719)	Crtc1 (ENSDORG00000026183)	Klhl26 (ENSDORG00000000436)	Tmem59l (ENSDORG00000024894)	Gm11808 (ENSDORG00000026093)	ENSDORG00000025514	Fkbp8 (ENSDORG00000010135)
Myomorpha	ANCESTRAL SPECIES	43	ENSGT00940000162643	ENSGT00390000008152.B.a	ENSGT00390000007227.b	ENSGT00390000000719	ENSGT00940000160464	ENSGT00390000004097.a	ENSGT00390000012198	ENSGT00410000025695.a	ENSGT00390000012913.a	ENSGT00940000160926	ENSGT00940000158649	ENSGT00390000017748	ENSGT00940000160753	ENSGT00390000014856	ENSGT00940000160699	ENSGT00390000000672.a.a ##22	ENSGT00940000158163	ENSGT00390000002913	ENSGT00410000025695.b	ENSGT00940000158081	ENSGT00730000111231	ENSGT00390000003478	ENSGT01030000234515.b	ENSGT00940000162926	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00390000011631
Muroidea	ANCESTRAL SPECIES	47	ENSGT00940000162643	ENSGT00390000008152.B.a	ENSGT00390000007227.b	ENSGT00390000000719	ENSGT00940000160464	ENSGT00390000004097.a	ENSGT00390000012198	ENSGT00410000025695.a	ENSGT00390000012913.a	ENSGT00940000160926	ENSGT00940000158649	ENSGT00390000017748	ENSGT00940000160753	ENSGT00390000014856	ENSGT00940000160699	ENSGT00390000000672.a.a ##22	ENSGT00940000158163	ENSGT00390000002913	ENSGT00410000025695.b	ENSGT00940000158081	ENSGT00730000111231	ENSGT00390000003478	ENSGT01030000234515.b	ENSGT00940000162926	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00390000011631
Muroidea_A	ANCESTRAL SPECIES	28	ENSGT00940000162643	ENSGT00390000008152.B.a	ENSGT00390000007227.b	ENSGT00390000000719	ENSGT00940000160464	ENSGT00390000004097.a	ENSGT00390000012198	ENSGT00410000025695.a	ENSGT00390000012913.a	ENSGT00940000160926	ENSGT00940000158649	ENSGT00390000017748	ENSGT00940000160753	ENSGT00390000014856	ENSGT00940000160699	ENSGT00390000000672.a.a ##22	ENSGT00940000158163	ENSGT00390000002913	ENSGT00410000025695.b	ENSGT00940000158081	ENSGT00730000111231	ENSGT00390000003478	ENSGT01030000234515.b	ENSGT00940000162926	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00390000011631
Cricetidae	ANCESTRAL SPECIES	30	ENSGT00940000162643	ENSGT00390000008152.B.a	ENSGT00390000007227.b	ENSGT00390000000719	ENSGT00940000160464	ENSGT00390000004097.a	ENSGT00390000012198	ENSGT00410000025695.a	ENSGT00390000012913.a	ENSGT00940000160926	ENSGT00940000158649	ENSGT00390000017748	ENSGT00940000160753	ENSGT00390000014856	ENSGT00940000160699	ENSGT00390000000672.a.a ##22	ENSGT00940000158163	ENSGT00390000002913	ENSGT00410000025695.b	ENSGT00940000158081	ENSGT00730000111231	ENSGT00390000003478	ENSGT01030000234515.b	ENSGT00940000162926	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00390000011631
Cricetinae	ANCESTRAL SPECIES	36	ENSGT00940000162643	ENSGT00390000008152.B.a	ENSGT00390000007227.b	ENSGT00390000000719	ENSGT00940000160464	ENSGT00390000004097.a	ENSGT00390000012198	ENSGT00410000025695.a	ENSGT00390000012913.a	ENSGT00940000160926	ENSGT00940000158649	ENSGT00390000017748	ENSGT00940000160753	ENSGT00390000014856	ENSGT00940000160699	ENSGT00390000000672.a.a ##22	ENSGT00940000158163	ENSGT00390000002913	ENSGT00410000025695.b	ENSGT00940000158081	ENSGT00730000111231	ENSGT00390000003478	ENSGT01030000234515.b	ENSGT00940000162926	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00390000011631
Chinese hamster chok1gshd	MODERN SPECIES	184	Pbx4 (ENSCGRG00001014693)	Cilp2 (ENSCGRG00001007338)	Yjefn3 (ENSCGRG00001023789)	Ndufa13 (ENSCGRG00001022785)	Tssk6 (ENSCGRG00001010147)	Gatad2a (ENSCGRG00001018413)	Mau2 (ENSCGRG00001009180)	Sugp1 (ENSCGRG00001021250)	Tm6sf2 (ENSCGRG00001019424)	Hapln4 (ENSCGRG00001018509)	Ncan (ENSCGRG00001015055)	Nr2c2ap (ENSCGRG00001011302)	Rfxank (ENSCGRG00001000782)	Borcs8 (ENSCGRG00001020163)	Mef2b (ENSCGRG00001014460)	Tmem161a (ENSCGRG00001022808) ##22	Slc25a42 (ENSCGRG00001022045)	Armc6 (ENSCGRG00001019296)	Sugp2 (ENSCGRG00001018264)	Homer3 (ENSCGRG00001014952)	Ddx49 (ENSCGRG00001009467)	COPE (ENSCGRG00001024248)	ENSCGRG00001019774	ENSCGRG00001006921	Upf1 (ENSCGRG00001021067)	Comp (ENSCGRG00001009171)	Crtc1 (ENSCGRG00001002202)	Klhl26 (ENSCGRG00001020014)	Tmem59l (ENSCGRG00001018799)	Crlf1 (ENSCGRG00001017905)	Rex1bd (ENSCGRG00001023832)
Golden Hamster	MODERN SPECIES	831	Pbx4 (ENSMAUG00000000855)	Cilp2 (ENSMAUG00000005034)	Yjefn3 (ENSMAUG00000021666)	Ndufa13 (ENSMAUG00000019158)	Tssk6 (ENSMAUG00000008397)	Gatad2a (ENSMAUG00000021128)	Mau2 (ENSMAUG00000021335)	Sugp1 (ENSMAUG00000016683)	Tm6sf2 (ENSMAUG00000001556)	Hapln4 (ENSMAUG00000011983)	Ncan (ENSMAUG00000007276)	Nr2c2ap (ENSMAUG00000003921)	Rfxank (ENSMAUG00000002477)	Borcs8 (ENSMAUG00000014785)	Mef2b (ENSMAUG00000006774)	Tmem161a (ENSMAUG00000011694) ##22	Slc25a42 (ENSMAUG00000018082)	Armc6 (ENSMAUG00000011324)	Sugp2 (ENSMAUG00000011371)	Homer3 (ENSMAUG00000014150)	Ddx49 (ENSMAUG00000010235)	Cope (ENSMAUG00000016322)	ENSMAUG00000011350	ENSMAUG00000012872	Upf1 (ENSMAUG00000011398)	Comp (ENSMAUG00000010602)	Crtc1 (ENSMAUG00000019225)	Klhl26 (ENSMAUG00000021352)	Tmem59l (ENSMAUG00000006146)	Crlf1 (ENSMAUG00000021052)	Rex1bd (ENSMAUG00000015830)
Cricetidae_B	ANCESTRAL SPECIES	17	ENSGT00940000162643	ENSGT00390000008152.B.a	ENSGT00390000007227.b	ENSGT00390000000719	ENSGT00940000160464	ENSGT00390000004097.a	ENSGT00390000012198	ENSGT00410000025695.a	ENSGT00390000012913.a	ENSGT00940000160926	ENSGT00940000158649	ENSGT00390000017748	ENSGT00940000160753	ENSGT00390000014856	ENSGT00940000160699	ENSGT00390000000672.a.a ##22	ENSGT00940000158163	ENSGT00390000002913	ENSGT00410000025695.b	ENSGT00940000158081	ENSGT00730000111231	ENSGT00390000003478	ENSGT01030000234515.b	ENSGT00940000162926	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00390000011631
Northern American deer mouse	MODERN SPECIES	8	Pbx4 (ENSPEMG00000010841)	Cilp2 (ENSPEMG00000008010)	Yjefn3 (ENSPEMG00000011764)	Ndufa13 (ENSPEMG00000007743)	Tssk6 (ENSPEMG00000007183)	Gatad2a (ENSPEMG00000012515)	Mau2 (ENSPEMG00000016559)	Sugp1 (ENSPEMG00000009253)	Tm6sf2 (ENSPEMG00000016397)	Hapln4 (ENSPEMG00000029211)	Ncan (ENSPEMG00000012564)	Nr2c2ap (ENSPEMG00000001962)	Rfxank (ENSPEMG00000007761)	Borcs8 (ENSPEMG00000010340)	Mef2b (ENSPEMG00000018054)	Tmem161a (ENSPEMG00000016451) ##22	Slc25a42 (ENSPEMG00000011354)	Armc6 (ENSPEMG00000012468)	Sugp2 (ENSPEMG00000009700)	Homer3 (ENSPEMG00000016382)	Ddx49 (ENSPEMG00000009238)	Cope (ENSPEMG00000018557)	ENSPEMG00000012430	ENSPEMG00000029913	Upf1 (ENSPEMG00000001085)	Comp (ENSPEMG00000019103)	Crtc1 (ENSPEMG00000005110)	Klhl26 (ENSPEMG00000016863)	Tmem59l (ENSPEMG00000014170)	Crlf1 (ENSPEMG00000010464)	Rex1bd (ENSPEMG00000017857)
Prairie vole	MODERN SPECIES	164	Pbx4 (ENSMOCG00000001326)	Cilp2 (ENSMOCG00000018051)	Yjefn3 (ENSMOCG00000019664)	Ndufa13 (ENSMOCG00000015070)	Tssk6 (ENSMOCG00000007466)	Gatad2a (ENSMOCG00000001060)	Mau2 (ENSMOCG00000003213)	Sugp1 (ENSMOCG00000014670)	Tm6sf2 (ENSMOCG00000018885)	Hapln4 (ENSMOCG00000000353)	Ncan (ENSMOCG00000020207)	Nr2c2ap (ENSMOCG00000003423)	Rfxank (ENSMOCG00000021751)	ENSMOCG00000008996	Mef2b (ENSMOCG00000000308)	Tmem161a (ENSMOCG00000018852) ##22	Slc25a42 (ENSMOCG00000012570)	Armc6 (ENSMOCG00000014288)	Sugp2 (ENSMOCG00000009704)	Homer3 (ENSMOCG00000013590)	Ddx49 (ENSMOCG00000018690)	Cope (ENSMOCG00000014940)	ENSMOCG00000004861	ENSMOCG00000000275	Upf1 (ENSMOCG00000005699)	Comp (ENSMOCG00000004567)	Crtc1 (ENSMOCG00000005553)	Klhl26 (ENSMOCG00000017635)	Tmem59l (ENSMOCG00000010649)	Crlf1 (ENSMOCG00000007746)	Rex1bd (ENSMOCG00000014306)
Murinae	ANCESTRAL SPECIES	23	ENSGT00940000162643	ENSGT00390000008152.B.a	ENSGT00390000007227.b	ENSGT00390000000719	ENSGT00940000160464	ENSGT00390000004097.a	ENSGT00390000012198	ENSGT00410000025695.a	ENSGT00390000012913.a	ENSGT00940000160926	ENSGT00940000158649	ENSGT00390000017748	ENSGT00940000160753	ENSGT00390000014856	ENSGT00940000160699	ENSGT00390000000672.a.a ##22	ENSGT00940000158163	ENSGT00390000002913	ENSGT00410000025695.b	ENSGT00940000158081	ENSGT00730000111231	ENSGT00390000003478	ENSGT01030000234515.b	ENSGT00940000162926	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00390000011631
Mus	ANCESTRAL SPECIES	6	ENSGT00940000162643	ENSGT00390000008152.B.a	ENSGT00390000007227.b	ENSGT00390000000719	ENSGT00940000160464	ENSGT00390000004097.a	ENSGT00390000012198	ENSGT00410000025695.a	ENSGT00390000012913.a	ENSGT00940000160926	ENSGT00940000158649	ENSGT00390000017748	ENSGT00940000160753	ENSGT00390000014856	ENSGT00940000160699	ENSGT00390000000672.a.a ##22	ENSGT00940000158163	ENSGT00390000002913	ENSGT00410000025695.b	ENSGT00940000158081	ENSGT00730000111231	ENSGT00390000003478	ENSGT01030000234515.b	ENSGT00940000162926	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00390000011631
Mus_A	ANCESTRAL SPECIES	8	ENSGT00940000162643	ENSGT00390000008152.B.a	ENSGT00390000007227.b	ENSGT00390000000719	ENSGT00940000160464	ENSGT00390000004097.a	ENSGT00390000012198	ENSGT00410000025695.a	ENSGT00390000012913.a	ENSGT00940000160926	ENSGT00940000158649	ENSGT00390000017748	ENSGT00940000160753	ENSGT00390000014856	ENSGT00940000160699	ENSGT00390000000672.a.a ##22	ENSGT00940000158163	ENSGT00390000002913	ENSGT00410000025695.b	ENSGT00940000158081	ENSGT00730000111231	ENSGT00390000003478	ENSGT01030000234515.b	ENSGT00940000162926	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00390000011631
Mus_B	ANCESTRAL SPECIES	6	ENSGT00940000162643	ENSGT00390000008152.B.a	ENSGT00390000007227.b	ENSGT00390000000719	ENSGT00940000160464	ENSGT00390000004097.a	ENSGT00390000012198	ENSGT00410000025695.a	ENSGT00390000012913.a	ENSGT00940000160926	ENSGT00940000158649	ENSGT00390000017748	ENSGT00940000160753	ENSGT00390000014856	ENSGT00940000160699	ENSGT00390000000672.a.a ##22	ENSGT00940000158163	ENSGT00390000002913	ENSGT00410000025695.b	ENSGT00940000158081	ENSGT00730000111231	ENSGT00390000003478	ENSGT01030000234515.b	ENSGT00940000162926	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00390000011631
Mus_C	ANCESTRAL SPECIES	5	ENSGT00940000162643	ENSGT00390000008152.B.a	ENSGT00390000007227.b	ENSGT00390000000719	ENSGT00940000160464	ENSGT00390000004097.a	ENSGT00390000012198	ENSGT00410000025695.a	ENSGT00390000012913.a	ENSGT00940000160926	ENSGT00940000158649	ENSGT00390000017748	ENSGT00940000160753	ENSGT00390000014856	ENSGT00940000160699	ENSGT00390000000672.a.a ##22	ENSGT00940000158163	ENSGT00390000002913	ENSGT00410000025695.b	ENSGT00940000158081	ENSGT00730000111231	ENSGT00390000003478	ENSGT01030000234515.b	ENSGT00940000162926	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00390000011631
Steppe mouse	MODERN SPECIES	2734	Pbx4 (ENSMSIG00000032030)	Cilp2 (ENSMSIG00000032031)	Yjefn3 (ENSMSIG00000032032)	Ndufa13 (ENSMSIG00000032033)	Tssk6 (ENSMSIG00000032034)	Gatad2a (ENSMSIG00000032035)	Mau2 (ENSMSIG00000032036)	Sugp1 (ENSMSIG00000032037)	Tm6sf2 (ENSMSIG00000032038)	Hapln4 (ENSMSIG00000032039)	Ncan (ENSMSIG00000032040)	Nr2c2ap (ENSMSIG00000032043)	Rfxank (ENSMSIG00000032044)	Borcs8 (ENSMSIG00000032045)	ENSMSIG00000032046	Tmem161a (ENSMSIG00000032047) ##22	Slc25a42 (ENSMSIG00000032048)	Armc6 (ENSMSIG00000032049)	Sugp2 (ENSMSIG00000032050)	Homer3 (ENSMSIG00000032051)	Ddx49 (ENSMSIG00000032052)	Cope (ENSMSIG00000032053)	ENSMSIG00000032054	ENSMSIG00000032055	Upf1 (ENSMSIG00000032056)	Comp (ENSMSIG00000032057)	Crtc1 (ENSMSIG00000032058)	Klhl26 (ENSMSIG00000032059)	Tmem59l (ENSMSIG00000032060)	Crlf1 (ENSMSIG00000032061)	ENSMSIG00000032062
spretus	MODERN SPECIES	17	Pbx4 (MGP_SPRETEiJ_G0032237)	Cilp2 (MGP_SPRETEiJ_G0032238)	Yjefn3 (MGP_SPRETEiJ_G0032239)	Ndufa13 (MGP_SPRETEiJ_G0032240)	Tssk6 (MGP_SPRETEiJ_G0032241)	Gatad2a (MGP_SPRETEiJ_G0032242)	Mau2 (MGP_SPRETEiJ_G0032243)	Sugp1 (MGP_SPRETEiJ_G0032244)	Tm6sf2 (MGP_SPRETEiJ_G0032245)	Hapln4 (MGP_SPRETEiJ_G0032246)	Ncan (MGP_SPRETEiJ_G0032247)	Rfxank (MGP_SPRETEiJ_G0032248)	Nr2c2ap (MGP_SPRETEiJ_G0032249)	MGP_SPRETEiJ_G0032250	MGP_SPRETEiJ_G0032251	Tmem161a (MGP_SPRETEiJ_G0032252) ##22	Slc25a42 (MGP_SPRETEiJ_G0032253)	Armc6 (MGP_SPRETEiJ_G0032254)	Sugp2 (MGP_SPRETEiJ_G0032255)	Homer3 (MGP_SPRETEiJ_G0032256)	Ddx49 (MGP_SPRETEiJ_G0032257)	Cope (MGP_SPRETEiJ_G0032258)	MGP_SPRETEiJ_G0032259	Upf1 (MGP_SPRETEiJ_G0032260)	Comp (MGP_SPRETEiJ_G0032261)	Crtc1 (MGP_SPRETEiJ_G0032262)	Klhl26 (MGP_SPRETEiJ_G0032263)	Tmem59l (MGP_SPRETEiJ_G0032264)	Crlf1 (MGP_SPRETEiJ_G0032265)	Rex1bd (MGP_SPRETEiJ_G0032266)	MGP_SPRETEiJ_G0032267
Mouse	MODERN SPECIES	17	Pbx4 (ENSMUSG00000031860)	Cilp2 (ENSMUSG00000044006)	Yjefn3 (ENSMUSG00000048967)	Ndufa13 (ENSMUSG00000036199)	Tssk6 (ENSMUSG00000047654)	Gatad2a (ENSMUSG00000036180)	Mau2 (ENSMUSG00000031858)	Sugp1 (ENSMUSG00000011306)	Tm6sf2 (ENSMUSG00000036151)	Hapln4 (ENSMUSG00000007594)	Ncan (ENSMUSG00000002341)	Rfxank (ENSMUSG00000036120)	Nr2c2ap (ENSMUSG00000071078)	Borcs8 (ENSMUSG00000002345)	Mef2b (ENSMUSG00000079033)	Tmem161a (ENSMUSG00000002342) ##22	Slc25a42 (ENSMUSG00000002346)	Armc6 (ENSMUSG00000002343)	Sugp2 (ENSMUSG00000036054)	Homer3 (ENSMUSG00000003573)	Ddx49 (ENSMUSG00000057788)	Cope (ENSMUSG00000055681)	Cers1 (ENSMUSG00000087408)	Gdf1 (ENSMUSG00000109523)	Upf1 (ENSMUSG00000058301)	Comp (ENSMUSG00000031849)	Crtc1 (ENSMUSG00000003575)	Klhl26 (ENSMUSG00000055707)	Tmem59l (ENSMUSG00000035964)	Crlf1 (ENSMUSG00000007888)	Rex1bd (ENSMUSG00000058833)
Ryukyu mouse	MODERN SPECIES	17	Pbx4 (MGP_CAROLIEiJ_G0031119)	Cilp2 (MGP_CAROLIEiJ_G0031120)	Yjefn3 (MGP_CAROLIEiJ_G0031121)	Ndufa13 (MGP_CAROLIEiJ_G0031122)	Tssk6 (MGP_CAROLIEiJ_G0031123)	Gatad2a (MGP_CAROLIEiJ_G0031124)	Mau2 (MGP_CAROLIEiJ_G0031125)	Sugp1 (MGP_CAROLIEiJ_G0031126)	Tm6sf2 (MGP_CAROLIEiJ_G0031127)	Hapln4 (MGP_CAROLIEiJ_G0031128)	Ncan (MGP_CAROLIEiJ_G0031129)	Rfxank (MGP_CAROLIEiJ_G0031130)	Nr2c2ap (MGP_CAROLIEiJ_G0031131)	MGP_CAROLIEiJ_G0031132	MGP_CAROLIEiJ_G0031133	Tmem161a (MGP_CAROLIEiJ_G0031134) ##22	Slc25a42 (MGP_CAROLIEiJ_G0031135)	Armc6 (MGP_CAROLIEiJ_G0031136)	Sugp2 (MGP_CAROLIEiJ_G0031137)	Homer3 (MGP_CAROLIEiJ_G0031138)	Ddx49 (MGP_CAROLIEiJ_G0031139)	Cope (MGP_CAROLIEiJ_G0031140)	MGP_CAROLIEiJ_G0031141	Upf1 (MGP_CAROLIEiJ_G0031142)	Comp (MGP_CAROLIEiJ_G0031143)	Crtc1 (MGP_CAROLIEiJ_G0031144)	Klhl26 (MGP_CAROLIEiJ_G0031145)	Tmem59l (MGP_CAROLIEiJ_G0031146)	Crlf1 (MGP_CAROLIEiJ_G0031147)	Rex1bd (MGP_CAROLIEiJ_G0031148)	MGP_CAROLIEiJ_G0031149
Shrew mouse	MODERN SPECIES	10	Pbx4 (MGP_PahariEiJ_G0021584)	Cilp2 (MGP_PahariEiJ_G0021585)	Yjefn3 (MGP_PahariEiJ_G0021586)	Ndufa13 (MGP_PahariEiJ_G0021587)	Tssk6 (MGP_PahariEiJ_G0021588)	Gatad2a (MGP_PahariEiJ_G0021589)	Mau2 (MGP_PahariEiJ_G0021590)	Sugp1 (MGP_PahariEiJ_G0021591)	Tm6sf2 (MGP_PahariEiJ_G0021592)	Hapln4 (MGP_PahariEiJ_G0021593)	Ncan (MGP_PahariEiJ_G0021594)	Rfxank (MGP_PahariEiJ_G0021595)	Nr2c2ap (MGP_PahariEiJ_G0021596)	MGP_PahariEiJ_G0021597	MGP_PahariEiJ_G0021598	Tmem161a (MGP_PahariEiJ_G0021599) ##22	Slc25a42 (MGP_PahariEiJ_G0021600)	Armc6 (MGP_PahariEiJ_G0021601)	Sugp2 (MGP_PahariEiJ_G0021602)	Homer3 (MGP_PahariEiJ_G0021603)	Ddx49 (MGP_PahariEiJ_G0021604)	Cope (MGP_PahariEiJ_G0021605)	MGP_PahariEiJ_G0021606	Upf1 (MGP_PahariEiJ_G0021607)	Comp (MGP_PahariEiJ_G0021608)	Crtc1 (MGP_PahariEiJ_G0021609)	Klhl26 (MGP_PahariEiJ_G0021610)	Tmem59l (MGP_PahariEiJ_G0021611)	Crlf1 (MGP_PahariEiJ_G0021612)	Rex1bd (MGP_PahariEiJ_G0021613)	MGP_PahariEiJ_G0021614
Rat	MODERN SPECIES	7	Pbx4 (ENSRNOG00000010736)	Cilp2 (ENSRNOG00000020622)	Yjefn3 (ENSRNOG00000039191)	Ndufa13 (ENSRNOG00000020602)	Tssk6 (ENSRNOG00000020599)	Gatad2a (ENSRNOG00000022173)	Mau2 (ENSRNOG00000020526)	Sugp1 (ENSRNOG00000052111)	Tm6sf2 (ENSRNOG00000042237)	Hapln4 (ENSRNOG00000049949)	Ncan (ENSRNOG00000048036)	Nr2c2ap (ENSRNOG00000022247)	Rfxank (ENSRNOG00000033318)	Borcs8 (ENSRNOG00000020427)	Mef2b (ENSRNOG00000020400)	Tmem161a (ENSRNOG00000020390) ##22	Slc25a42 (ENSRNOG00000020345)	Armc6 (ENSRNOG00000020280)	Sugp2 (ENSRNOG00000020269)	Homer3 (ENSRNOG00000020229)	Ddx49 (ENSRNOG00000022368)	Cope (ENSRNOG00000020178)	Cers1 (ENSRNOG00000067124)	Gdf1 (ENSRNOG00000070518)	Upf1 (ENSRNOG00000020134)	Comp (ENSRNOG00000048472)	Crtc1 (ENSRNOG00000022421)	Klhl26 (ENSRNOG00000020088)	Tmem59l (ENSRNOG00000022432)	Crlf1 (ENSRNOG00000020030)	Rex1bd (ENSRNOG00000019990)
Upper Galilee mountains blind mole rat	MODERN SPECIES	1870	Pbx4 (ENSNGAG00000013031)	Cilp2 (ENSNGAG00000011748)	Yjefn3 (ENSNGAG00000021673)	Ndufa13 (ENSNGAG00000023080)	Tssk6 (ENSNGAG00000001299)	Gatad2a (ENSNGAG00000004469)	Mau2 (ENSNGAG00000015571)	Sugp1 (ENSNGAG00000018965)	Tm6sf2 (ENSNGAG00000020192)	Hapln4 (ENSNGAG00000014554)	Ncan (ENSNGAG00000022597)	Nr2c2ap (ENSNGAG00000010770)	Rfxank (ENSNGAG00000012986)	Borcs8 (ENSNGAG00000023653)	Mef2b (ENSNGAG00000010342)	Tmem161a (ENSNGAG00000023788) ##22	Slc25a42 (ENSNGAG00000023980)	Armc6 (ENSNGAG00000021205)	Sugp2 (ENSNGAG00000005936)	Homer3 (ENSNGAG00000015803)	Ddx49 (ENSNGAG00000019673)	Cope (ENSNGAG00000022394)	ENSNGAG00000022292	ENSNGAG00000022538	Upf1 (ENSNGAG00000024107)	Comp (ENSNGAG00000024332)	Crtc1 (ENSNGAG00000021475)	Klhl26 (ENSNGAG00000010743)	Tmem59l (ENSNGAG00000020797)	Crlf1 (ENSNGAG00000022169)	Rex1bd (ENSNGAG00000013627)
Rodentia_A	ANCESTRAL SPECIES	16	ENSGT00940000162643	ENSGT00390000008152.B.a	ENSGT00390000007227.b	ENSGT00390000000719	ENSGT00940000160464	ENSGT00390000004097.a	ENSGT00390000012198	ENSGT00410000025695.a	ENSGT00390000012913.a	ENSGT00940000160926	ENSGT00940000158649	ENSGT00390000017748	ENSGT00940000160753	ENSGT00390000014856	ENSGT00940000160699	ENSGT00390000000672.a.a ##22	ENSGT00940000158163	ENSGT00390000002913	ENSGT00410000025695.b	ENSGT00940000158081	ENSGT00730000111231	ENSGT00390000003478	ENSGT01030000234515.b	ENSGT00940000162926	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00390000011631
Hystricomorpha	ANCESTRAL SPECIES	47	ENSGT01050000244941.B.c	ENSGT00390000008152.B.a	ENSGT00390000007227.b	ENSGT00390000000719	ENSGT00940000160464	ENSGT00390000004097.a	ENSGT00390000012198	ENSGT00410000025695.a	ENSGT00390000012913.a	ENSGT00940000160926	ENSGT00940000158649	ENSGT00390000017748	ENSGT00940000160753	ENSGT00390000014856	ENSGT00940000160699	ENSGT00390000000672.a.a ##22	ENSGT00940000158163	ENSGT00390000002913	ENSGT00410000025695.b	ENSGT00940000158081	ENSGT00730000111231	ENSGT00390000003478	ENSGT01030000234515.b	ENSGT00940000162926	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00390000011631
Hystricomorpha_a	ANCESTRAL SPECIES	55	ENSGT01050000244941.B.c	ENSGT00390000008152.B.a	ENSGT00390000007227.b	ENSGT00390000000719	ENSGT00940000160464	ENSGT00390000004097.a	ENSGT00390000012198	ENSGT00410000025695.a	ENSGT00390000012913.a	ENSGT00940000160926	ENSGT00940000158649	ENSGT00390000017748	ENSGT00940000160753	ENSGT00390000014856	ENSGT00940000160699	ENSGT00390000000672.a.a ##22	ENSGT00940000158163	ENSGT00390000002913	ENSGT00410000025695.b	ENSGT00940000158081	ENSGT00730000111231	ENSGT00390000003478	ENSGT01030000234515.b	ENSGT00940000162926	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00390000011631
Hystricomorpha_b	ANCESTRAL SPECIES	66	ENSGT01050000244941.B.c	ENSGT00390000008152.B.a	ENSGT00390000007227.b	ENSGT00390000000719	ENSGT00940000160464	ENSGT00390000004097.a	ENSGT00390000012198	ENSGT00410000025695.a	ENSGT00390000012913.a	ENSGT00940000160926	ENSGT00940000158649	ENSGT00390000017748	ENSGT00940000160753	ENSGT00390000014856	ENSGT00940000160699	ENSGT00390000000672.a.a ##22	ENSGT00940000158163	ENSGT00390000002913	ENSGT00410000025695.b	ENSGT00940000158081	ENSGT00730000111231	ENSGT00390000003478	ENSGT01030000234515.b	ENSGT00940000162926	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00390000011631
Long-tailed chinchilla	MODERN SPECIES	231	LPAR2 (ENSCLAG00000016969)	CILP2 (ENSCLAG00000015928)	YJEFN3 (ENSCLAG00000016158)	NDUFA13 (ENSCLAG00000016915)	TSSK6 (ENSCLAG00000018107)	GATAD2A (ENSCLAG00000010160)	MAU2 (ENSCLAG00000006535)	SUGP1 (ENSCLAG00000003512)	TM6SF2 (ENSCLAG00000003633)	HAPLN4 (ENSCLAG00000003955)	NCAN (ENSCLAG00000004140)	NR2C2AP (ENSCLAG00000004378)	RFXANK (ENSCLAG00000004632)	BORCS8 (ENSCLAG00000004959)	MEF2B (ENSCLAG00000007377)	TMEM161A (ENSCLAG00000007578) ##22	SLC25A42 (ENSCLAG00000008004)	ARMC6 (ENSCLAG00000008215)	SUGP2 (ENSCLAG00000011375)	HOMER3 (ENSCLAG00000011599)	DDX49 (ENSCLAG00000012844)	COPE (ENSCLAG00000003621)	CERS1 (ENSCLAG00000003897)	UPF1 (ENSCLAG00000004037)	COMP (ENSCLAG00000005109)	CRTC1 (ENSCLAG00000005682)	KLHL26 (ENSCLAG00000006029)	TMEM59L (ENSCLAG00000006357)	CRLF1 (ENSCLAG00000006697)	ENSCLAG00000007191	UBA52 (ENSCLAG00000005686)
Degu	MODERN SPECIES	323	LPAR2 (ENSODEG00000010920)	CILP2 (ENSODEG00000010764)	YJEFN3 (ENSODEG00000011107)	NDUFA13 (ENSODEG00000013435)	TSSK6 (ENSODEG00000020032)	GATAD2A (ENSODEG00000013506)	MAU2 (ENSODEG00000012887)	SUGP1 (ENSODEG00000011538)	TM6SF2 (ENSODEG00000010936)	HAPLN4 (ENSODEG00000011689)	NCAN (ENSODEG00000011699)	NR2C2AP (ENSODEG00000011486)	RFXANK (ENSODEG00000013006)	BORCS8 (ENSODEG00000013003)	MEF2B (ENSODEG00000012357)	TMEM161A (ENSODEG00000012343) ##22	SLC25A42 (ENSODEG00000012168)	ARMC6 (ENSODEG00000012613)	SUGP2 (ENSODEG00000012058)	HOMER3 (ENSODEG00000014870)	DDX49 (ENSODEG00000011203)	COPE (ENSODEG00000011547)	CERS1 (ENSODEG00000011214)	GDF1 (ENSODEG00000011857)	UPF1 (ENSODEG00000012426)	COMP (ENSODEG00000015412)	CRTC1 (ENSODEG00000011739)	KLHL26 (ENSODEG00000012544)	TMEM59L (ENSODEG00000012052)	CRLF1 (ENSODEG00000012883)	REX1BD (ENSODEG00000013625)
Guinea pig	MODERN SPECIES	72	GMIP (ENSCPOG00000011161)	LPAR2 (ENSCPOG00000012652)	CILP2 (ENSCPOG00000007219)	YJEFN3 (ENSCPOG00000023842)	NDUFA13 (ENSCPOG00000019995)	TSSK6 (ENSCPOG00000024320)	GATAD2A (ENSCPOG00000015396)	MAU2 (ENSCPOG00000003755)	SUGP1 (ENSCPOG00000007797)	TM6SF2 (ENSCPOG00000022916)	HAPLN4 (ENSCPOG00000023683)	NR2C2AP (ENSCPOG00000032927)	RFXANK (ENSCPOG00000003121)	BORCS8 (ENSCPOG00000036178)	MEF2B (ENSCPOG00000032781)	TMEM161A (ENSCPOG00000013640) ##22	SLC25A42 (ENSCPOG00000013086)	ARMC6 (ENSCPOG00000006374)	SUGP2 (ENSCPOG00000006372)	HOMER3 (ENSCPOG00000004565)	DDX49 (ENSCPOG00000013626)	COPE (ENSCPOG00000013624)	CERS1 (ENSCPOG00000033783)	GDF1 (ENSCPOG00000031791)	UPF1 (ENSCPOG00000025463)	COMP (ENSCPOG00000025029)	CRTC1 (ENSCPOG00000034343)	KLHL26 (ENSCPOG00000020718)	TMEM59L (ENSCPOG00000021490)	CRLF1 (ENSCPOG00000021160)	UBA52 (ENSCPOG00000025880)
Naked mole-rat female	MODERN SPECIES	21	YJEFN3 (ENSHGLG00000019524)	NDUFA13 (ENSHGLG00000018628)	TSSK6 (ENSHGLG00000020778)	GATAD2A (ENSHGLG00000003176)	ENSHGLG00000049094	ENSHGLG00000048186	ENSHGLG00000039617	ENSHGLG00000042474	TM6SF2 (ENSHGLG00000004113)	HAPLN4 (ENSHGLG00000003896)	NCAN (ENSHGLG00000034381)	NR2C2AP (ENSHGLG00000033726)	RFXANK (ENSHGLG00000003396)	MEF2BNB (ENSHGLG00000047513)	ENSHGLG00000003123	TMEM161A (ENSHGLG00000009517) ##22	SLC25A42 (ENSHGLG00000008826)	ARMC6 (ENSHGLG00000008147)	HOMER3 (ENSHGLG00000006851)	ENSHGLG00000006789	COPE (ENSHGLG00000006648)	CERS1 (ENSHGLG00000013716)	GDF1 (ENSHGLG00000042377)	UPF1 (ENSHGLG00000010900)	COMP (ENSHGLG00000009575)	ENSHGLG00000041161	TMEM59L (ENSHGLG00000035873)	CRLF1 (ENSHGLG00000006747)	REX1BD (ENSHGLG00000018788)	UBA52 (ENSHGLG00000019381)	KXD1 (ENSHGLG00000044958)
Sciuridae	ANCESTRAL SPECIES	20	ENSGT00940000162643	ENSGT00390000008152.B.a	ENSGT00390000007227.b	ENSGT00390000000719	ENSGT00940000160464	ENSGT00390000004097.a	ENSGT00390000012198	ENSGT00410000025695.a	ENSGT00390000012913.a	ENSGT00940000160926	ENSGT00940000158649	ENSGT00390000017748	ENSGT00940000160753	ENSGT00390000014856	ENSGT00940000160699	ENSGT00390000000672.a.a ##22	ENSGT00940000158163	ENSGT00390000002913	ENSGT00410000025695.b	ENSGT00940000158081	ENSGT00730000111231	ENSGT00390000003478	ENSGT01030000234515.b	ENSGT00940000162926	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00390000011631
Marmotini	ANCESTRAL SPECIES	12	ENSGT00940000162643	ENSGT00390000008152.B.a	ENSGT00390000007227.b	ENSGT00390000000719	ENSGT00940000160464	ENSGT00390000004097.a	ENSGT00390000012198	ENSGT00410000025695.a	ENSGT00390000012913.a	ENSGT00940000160926	ENSGT00940000158649	ENSGT00390000017748	ENSGT00940000160753	ENSGT00390000014856	ENSGT00940000160699	ENSGT00390000000672.a.a ##22	ENSGT00940000158163	ENSGT00390000002913	ENSGT00410000025695.b	ENSGT00940000158081	ENSGT00730000111231	ENSGT00390000003478	ENSGT01030000234515.b	ENSGT00940000162926	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00390000011631
Alpin marmot	MODERN SPECIES	24	PBX4 (ENSMMMG00000003652)	CILP2 (ENSMMMG00000003635)	YJEFN3 (ENSMMMG00000003614)	NDUFA13 (ENSMMMG00000003609)	TSSK6 (ENSMMMG00000003603)	GATAD2A (ENSMMMG00000003539)	MAU2 (ENSMMMG00000003432)	SUGP1 (ENSMMMG00000003416)	TM6SF2 (ENSMMMG00000003397)	HAPLN4 (ENSMMMG00000003386)	NCAN (ENSMMMG00000003066)	NR2C2AP (ENSMMMG00000003044)	RFXANK (ENSMMMG00000003029)	BORCS8 (ENSMMMG00000003015)	MEF2B (ENSMMMG00000002982)	TMEM161A (ENSMMMG00000002937) ##22	SLC25A42 (ENSMMMG00000002914)	ARMC6 (ENSMMMG00000002877)	SUGP2 (ENSMMMG00000002743)	HOMER3 (ENSMMMG00000002691)	DDX49 (ENSMMMG00000002658)	COPE (ENSMMMG00000002634)	CERS1 (ENSMMMG00000002619)	UPF1 (ENSMMMG00000001874)	COMP (ENSMMMG00000001807)	CRTC1 (ENSMMMG00000001771)	ENSMMMG00000001749	CRLF1 (ENSMMMG00000001730)	REX1BD (ENSMMMG00000001721)	ENSMMMG00000001669	FKBP8 (ENSMMMG00000001633)
Marmotini_b	ANCESTRAL SPECIES	12	ENSGT00940000162643	ENSGT00390000008152.B.a	ENSGT00390000007227.b	ENSGT00390000000719	ENSGT00940000160464	ENSGT00390000004097.a	ENSGT00390000012198	ENSGT00410000025695.a	ENSGT00390000012913.a	ENSGT00940000160926	ENSGT00940000158649	ENSGT00390000017748	ENSGT00940000160753	ENSGT00390000014856	ENSGT00940000160699	ENSGT00390000000672.a.a ##22	ENSGT00940000158163	ENSGT00390000002913	ENSGT00410000025695.b	ENSGT00940000158081	ENSGT00730000111231	ENSGT00390000003478	ENSGT01030000234515.b	ENSGT00940000162926	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00390000011631
Arctic ground squirrel	MODERN SPECIES	73	LPAR2 (ENSUPAG00010017989)	PBX4 (ENSUPAG00010017995)	CILP2 (ENSUPAG00010018008)	YJEFN3 (ENSUPAG00010018017)	TSSK6 (ENSUPAG00010018027)	GATAD2A (ENSUPAG00010018036)	MAU2 (ENSUPAG00010018075)	SUGP1 (ENSUPAG00010018104)	TM6SF2 (ENSUPAG00010018116)	HAPLN4 (ENSUPAG00010018121)	NCAN (ENSUPAG00010018127)	NR2C2AP (ENSUPAG00010018146)	RFXANK (ENSUPAG00010018152)	BORCS8 (ENSUPAG00010018165)	MEF2B (ENSUPAG00010018172)	TMEM161A (ENSUPAG00010018179) ##22	SLC25A42 (ENSUPAG00010018191)	ARMC6 (ENSUPAG00010018208)	SUGP2 (ENSUPAG00010018216)	HOMER3 (ENSUPAG00010018230)	DDX49 (ENSUPAG00010018246)	COPE (ENSUPAG00010018276)	CERS1 (ENSUPAG00010018294)	GDF1 (ENSUPAG00010018300)	UPF1 (ENSUPAG00010018302)	COMP (ENSUPAG00010018331)	CRTC1 (ENSUPAG00010018349)	KLHL26 (ENSUPAG00010018384)	TMEM59L (ENSUPAG00010018396)	CRLF1 (ENSUPAG00010018403)	REX1BD (ENSUPAG00010018419)
Squirrel	MODERN SPECIES	196	ENSSTOG00000019762	CILP2 (ENSSTOG00000026823)	YJEFN3 (ENSSTOG00000023979)	NDUFA13 (ENSSTOG00000022888)	TSSK6 (ENSSTOG00000021351)	GATAD2A (ENSSTOG00000022640)	MAU2 (ENSSTOG00000001026)	SUGP1 (ENSSTOG00000001020)	TM6SF2 (ENSSTOG00000025054)	HAPLN4 (ENSSTOG00000007240)	NCAN (ENSSTOG00000001012)	NR2C2AP (ENSSTOG00000001006)	RFXANK (ENSSTOG00000024080)	BORCS8 (ENSSTOG00000025422)	MEF2B (ENSSTOG00000005895)	TMEM161A (ENSSTOG00000005867) ##22	SLC25A42 (ENSSTOG00000022047)	ARMC6 (ENSSTOG00000012997)	SUGP2 (ENSSTOG00000026887)	HOMER3 (ENSSTOG00000029095)	DDX49 (ENSSTOG00000006749)	COPE (ENSSTOG00000006736)	CERS1 (ENSSTOG00000029010)	GDF1 (ENSSTOG00000020887)	UPF1 (ENSSTOG00000009196)	COMP (ENSSTOG00000026172)	CRTC1 (ENSSTOG00000022992)	KLHL26 (ENSSTOG00000026260)	TMEM59L (ENSSTOG00000013508)	CRLF1 (ENSSTOG00000004708)	REX1BD (ENSSTOG00000004692)
Eurasian red squirrel	MODERN SPECIES	7	CILP2 (ENSSVLG00005018243)	YJEFN3 (ENSSVLG00005018175)	NDUFA13 (ENSSVLG00005018132)	TSSK6 (ENSSVLG00005018119)	GATAD2A (ENSSVLG00005018054)	MAU2 (ENSSVLG00005017993)	SUGP1 (ENSSVLG00005017843)	TM6SF2 (ENSSVLG00005017792)	HAPLN4 (ENSSVLG00005017756)	ENSSVLG00005017692	NCAN (ENSSVLG00005017503)	NR2C2AP (ENSSVLG00005017403)	RFXANK (ENSSVLG00005017362)	BORCS8 (ENSSVLG00005017305)	MEF2B (ENSSVLG00005017215)	TMEM161A (ENSSVLG00005017057) ##22	SLC25A42 (ENSSVLG00005017005)	ARMC6 (ENSSVLG00005016951)	SUGP2 (ENSSVLG00005016823)	HOMER3 (ENSSVLG00005016701)	DDX49 (ENSSVLG00005016654)	COPE (ENSSVLG00005016567)	CERS1 (ENSSVLG00005016494)	UPF1 (ENSSVLG00005016436)	COMP (ENSSVLG00005016356)	CRTC1 (ENSSVLG00005016088)	KLHL26 (ENSSVLG00005015974)	TMEM59L (ENSSVLG00005015929)	CRLF1 (ENSSVLG00005015862)	REX1BD (ENSSVLG00005015816)	UBA52 (ENSSVLG00005025643)
Lagomorpha	ANCESTRAL SPECIES																	ENSGT00390000000672.a.a ##22
Pika	MODERN SPECIES	1956																ENSOPRG00000005876 ##22
Tree shrew	MODERN SPECIES	2501															ENSTBEG00000010368	TMEM161A (ENSTBEG00000010212) ##22
Laurasiatheria	ANCESTRAL SPECIES	15	ENSGT00390000007227.b	ENSGT00960000189525	ENSGT00390000000719	ENSGT00940000160464	ENSGT01090000261752	ENSGT00390000004097.a	ENSGT00390000012198	ENSGT00410000025695.a	ENSGT00390000012913.a	ENSGT00940000160926	ENSGT00940000158649	ENSGT00390000017748	ENSGT00940000160753	ENSGT00390000014856	ENSGT00940000160699	ENSGT00390000000672.a.a ##22	ENSGT00940000158163	ENSGT00390000002913	ENSGT00410000025695.b	ENSGT00940000158081	ENSGT00730000111231	ENSGT00390000003478	ENSGT01030000234515.b	ENSGT00940000162926	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00910000147684
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00390000000672.a.a ##22
Common shrew	MODERN SPECIES	3512																TMEM161A (ENSSARG00000008833) ##22
Laurasiatheria_a	ANCESTRAL SPECIES	19	ENSGT00390000007227.b	ENSGT00960000189525	ENSGT00390000000719	ENSGT00940000160464	ENSGT01090000261752	ENSGT00390000004097.a	ENSGT00390000012198	ENSGT00410000025695.a	ENSGT00390000012913.a	ENSGT00940000160926	ENSGT00940000158649	ENSGT00390000017748	ENSGT00940000160753	ENSGT00390000014856	ENSGT00940000160699	ENSGT00390000000672.a.a ##22	ENSGT00940000158163	ENSGT00390000002913	ENSGT00410000025695.b	ENSGT00940000158081	ENSGT00730000111231	ENSGT00390000003478	ENSGT01030000234515.b	ENSGT00940000162926	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00910000147684
Artiodactyla	ANCESTRAL SPECIES	22	ENSGT00940000162643.a	ENSGT00390000008152.B.a	ENSGT00390000007227.b	ENSGT00390000000719	ENSGT00940000160464	ENSGT00390000004097.a	ENSGT00390000012198	ENSGT00410000025695.a	ENSGT00390000012913.a	ENSGT00940000160926	ENSGT00940000158649	ENSGT00390000017748	ENSGT00940000160753	ENSGT00390000014856	ENSGT00940000160699	ENSGT00390000000672.a.a ##22	ENSGT00940000158163	ENSGT00390000002913	ENSGT00410000025695.b	ENSGT00940000158081	ENSGT00730000111231	ENSGT00390000003478	ENSGT01030000234515.b	ENSGT00940000162926	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00910000147684
Suina	ANCESTRAL SPECIES	39	ENSGT00940000162643.a	ENSGT00390000008152.B.a	ENSGT00390000007227.b	ENSGT00390000000719	ENSGT00940000160464	ENSGT00390000004097.a	ENSGT00390000012198	ENSGT00410000025695.a	ENSGT00390000012913.a	ENSGT00940000160926	ENSGT00940000158649	ENSGT00390000017748	ENSGT00940000160753	ENSGT00390000014856	ENSGT00940000160699	ENSGT00390000000672.a.a ##22	ENSGT00940000158163	ENSGT00390000002913	ENSGT00410000025695.b	ENSGT00940000158081	ENSGT00730000111231	ENSGT00390000003478	ENSGT01030000234515.b	ENSGT00940000162926	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00910000147684
Pig	MODERN SPECIES	10	CILP2 (ENSSSCG00000013934)	YJEFN3 (ENSSSCG00000013935)	NDUFA13 (ENSSSCG00000056961)	TSSK6 (ENSSSCG00000013937)	GATAD2A (ENSSSCG00000013938)	MAU2 (ENSSSCG00000021664)	SUGP1 (ENSSSCG00000036970)	ENSSSCG00000048260	TM6SF2 (ENSSSCG00000059192)	HAPLN4 (ENSSSCG00000034887)	NCAN (ENSSSCG00000032131)	NR2C2AP (ENSSSCG00000023658)	RFXANK (ENSSSCG00000036310)	BORCS8 (ENSSSCG00000044084)	MEF2B (ENSSSCG00000030351)	TMEM161A (ENSSSCG00000033168) ##22	SLC25A42 (ENSSSCG00000013927)	ENSSSCG00000044637	ARMC6 (ENSSSCG00000049430)	SUGP2 (ENSSSCG00000025839)	HOMER3 (ENSSSCG00000013919)	DDX49 (ENSSSCG00000025329)	COPE (ENSSSCG00000027840)	CERS1 (ENSSSCG00000013928)	UPF1 (ENSSSCG00000039301)	COMP (ENSSSCG00000013916)	CRTC1 (ENSSSCG00000013915)	KLHL26 (ENSSSCG00000013913)	TMEM59L (ENSSSCG00000013911)	CRLF1 (ENSSSCG00000013909)	REX1BD (ENSSSCG00000040666)
Chacoan peccary	MODERN SPECIES	769	PBX4 (ENSCWAG00000008974)	CILP2 (ENSCWAG00000008907)	YJEFN3 (ENSCWAG00000008846)	NDUFA13 (ENSCWAG00000008819)	TSSK6 (ENSCWAG00000008796)	GATAD2A (ENSCWAG00000008702)	MAU2 (ENSCWAG00000008506)	SUGP1 (ENSCWAG00000008452)	TM6SF2 (ENSCWAG00000008344)	HAPLN4 (ENSCWAG00000008277)	NCAN (ENSCWAG00000007920)	NR2C2AP (ENSCWAG00000007805)	RFXANK (ENSCWAG00000020046)	BORCS8 (ENSCWAG00000019997)	MEF2B (ENSCWAG00000019951)	TMEM161A (ENSCWAG00000019820) ##22	SLC25A42 (ENSCWAG00000019779)	ARMC6 (ENSCWAG00000019757)	SUGP2 (ENSCWAG00000019735)	HOMER3 (ENSCWAG00000019671)	DDX49 (ENSCWAG00000019644)	COPE (ENSCWAG00000019578)	CERS1 (ENSCWAG00000019515)	GDF1 (ENSCWAG00000019490)	UPF1 (ENSCWAG00000019458)	COMP (ENSCWAG00000019235)	CRTC1 (ENSCWAG00000019030)	KLHL26 (ENSCWAG00000018976)	TMEM59L (ENSCWAG00000018953)	CRLF1 (ENSCWAG00000018917)	ENSCWAG00000018899
Artiodactyla_a	ANCESTRAL SPECIES	23	ENSGT00940000162643.a	ENSGT00390000008152.B.a	ENSGT00390000007227.b	ENSGT00390000000719	ENSGT00940000160464	ENSGT00390000004097.a	ENSGT00390000012198	ENSGT00410000025695.a	ENSGT00390000012913.a	ENSGT00940000160926	ENSGT00940000158649	ENSGT00390000017748	ENSGT00940000160753	ENSGT00390000014856	ENSGT00940000160699	ENSGT00390000000672.a.a ##22	ENSGT00940000158163	ENSGT00390000002913	ENSGT00410000025695.b	ENSGT00940000158081	ENSGT00730000111231	ENSGT00390000003478	ENSGT01030000234515.b	ENSGT00940000162926	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00910000147684
Artiodactyla_b	ANCESTRAL SPECIES	23	ENSGT00940000162643.a	ENSGT00390000008152.B.a	ENSGT00390000007227.b	ENSGT00390000000719	ENSGT00940000160464	ENSGT00390000004097.a	ENSGT00390000012198	ENSGT00410000025695.a	ENSGT00390000012913.a	ENSGT00940000160926	ENSGT00940000158649	ENSGT00390000017748	ENSGT00940000160753	ENSGT00390000014856	ENSGT00940000160699	ENSGT00390000000672.a.a ##22	ENSGT00940000158163	ENSGT00390000002913	ENSGT00410000025695.b	ENSGT00940000158081	ENSGT00730000111231	ENSGT00390000003478	ENSGT01030000234515.b	ENSGT00940000162926	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00910000147684
Cetacea	ANCESTRAL SPECIES	1	ENSGT00940000162643.a	ENSGT00390000008152.B.a	ENSGT00390000007227.b	ENSGT00390000000719	ENSGT00940000160464	ENSGT00390000004097.a	ENSGT00390000012198	ENSGT00410000025695.a	ENSGT00390000012913.a	ENSGT00940000160926	ENSGT00940000158649	ENSGT00390000017748	ENSGT00940000160753	ENSGT00390000014856	ENSGT00940000160699	ENSGT00390000000672.a.a ##22	ENSGT00940000158163	ENSGT00390000002913	ENSGT00410000025695.b	ENSGT00940000158081	ENSGT00730000111231	ENSGT00390000003478	ENSGT01030000234515.b	ENSGT00940000162926	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00910000147684
Odontoceti	ANCESTRAL SPECIES	1	ENSGT00940000162643.a	ENSGT00390000008152.B.a	ENSGT00390000007227.b	ENSGT00390000000719	ENSGT00940000160464	ENSGT00390000004097.a	ENSGT00390000012198	ENSGT00410000025695.a	ENSGT00390000012913.a	ENSGT00940000160926	ENSGT00940000158649	ENSGT00390000017748	ENSGT00940000160753	ENSGT00390000014856	ENSGT00940000160699	ENSGT00390000000672.a.a ##22	ENSGT00940000158163	ENSGT00390000002913	ENSGT00410000025695.b	ENSGT00940000158081	ENSGT00730000111231	ENSGT00390000003478	ENSGT01030000234515.b	ENSGT00940000162926	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00910000147684
Odontoceti_a	ANCESTRAL SPECIES	1	ENSGT00940000162643.a	ENSGT00390000008152.B.a	ENSGT00390000007227.b	ENSGT00390000000719.g	ENSGT00940000160464	ENSGT00390000004097.a	ENSGT00390000012198	ENSGT00410000025695.a	ENSGT00390000012913.a	ENSGT00940000160926	ENSGT00940000158649	ENSGT00390000017748	ENSGT00940000160753	ENSGT00390000014856	ENSGT00940000160699	ENSGT00390000000672.a.a ##22	ENSGT00940000158163	ENSGT00390000002913	ENSGT00410000025695.b	ENSGT00940000158081	ENSGT00730000111231	ENSGT00390000003478	ENSGT01030000234515.b	ENSGT00940000162926	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00910000147684
Odontoceti_b	ANCESTRAL SPECIES	1	ENSGT00390000018299.eb.a	ENSGT00390000008152.B.a	ENSGT00390000007227.b	ENSGT00390000000719.g	ENSGT00940000160464	ENSGT00390000004097.a	ENSGT00390000012198	ENSGT00410000025695.a	ENSGT00390000012913.a	ENSGT00940000160926	ENSGT00940000158649	ENSGT00390000017748	ENSGT00940000160753	ENSGT00390000014856	ENSGT00940000160699	ENSGT00390000000672.a.a ##22	ENSGT00940000158163	ENSGT00390000002913	ENSGT00410000025695.b	ENSGT00940000158081	ENSGT00730000111231	ENSGT00390000003478	ENSGT01030000234515.b	ENSGT00940000162926	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00940000153593.c.a
Monodontidae	ANCESTRAL SPECIES	17	ENSGT00390000018299.eb.a	ENSGT00390000008152.B.a	ENSGT00390000007227.b	ENSGT00390000000719.g	ENSGT00940000160464	ENSGT00390000004097.a	ENSGT00390000012198	ENSGT00410000025695.a	ENSGT00390000012913.a	ENSGT00940000160926	ENSGT00940000158649	ENSGT00390000017748	ENSGT00940000160753	ENSGT00390000014856	ENSGT00940000160699	ENSGT00390000000672.a.a ##22	ENSGT00940000158163	ENSGT00390000002913	ENSGT00410000025695.b	ENSGT00940000158081	ENSGT00730000111231	ENSGT00390000003478	ENSGT01030000234515.b	ENSGT00940000162926	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00910000147684
Beluga whale	MODERN SPECIES	27	ENSDLEG00000009459	CILP2 (ENSDLEG00000009413)	YJEFN3 (ENSDLEG00000009396)	ENSDLEG00000009372	TSSK6 (ENSDLEG00000009362)	GATAD2A (ENSDLEG00000009307)	MAU2 (ENSDLEG00000009190)	SUGP1 (ENSDLEG00000009158)	TM6SF2 (ENSDLEG00000009148)	HAPLN4 (ENSDLEG00000006247)	NCAN (ENSDLEG00000006241)	ENSDLEG00000006238	RFXANK (ENSDLEG00000006230)	ENSDLEG00000006226	MEF2B (ENSDLEG00000006219)	TMEM161A (ENSDLEG00000006213) ##22	SLC25A42 (ENSDLEG00000006206)	ARMC6 (ENSDLEG00000006199)	SUGP2 (ENSDLEG00000006190)	HOMER3 (ENSDLEG00000006185)	DDX49 (ENSDLEG00000006176)	COPE (ENSDLEG00000006169)	CERS1 (ENSDLEG00000006163)	GDF1 (ENSDLEG00000006157)	UPF1 (ENSDLEG00000006145)	COMP (ENSDLEG00000006134)	CRTC1 (ENSDLEG00000006096)	KLHL26 (ENSDLEG00000006086)	TMEM59L (ENSDLEG00000006084)	CRLF1 (ENSDLEG00000006067)	ENSDLEG00000006057
Narwhal	MODERN SPECIES	298	ENSMMNG00015006078	CILP2 (ENSMMNG00015006092)	YJEFN3 (ENSMMNG00015006128)	ENSMMNG00015006145	TSSK6 (ENSMMNG00015006158)	GATAD2A (ENSMMNG00015006177)	MAU2 (ENSMMNG00015006228)	SUGP1 (ENSMMNG00015006270)	TM6SF2 (ENSMMNG00015006300)	HAPLN4 (ENSMMNG00015006325)	NCAN (ENSMMNG00015006441)	ENSMMNG00015006667	RFXANK (ENSMMNG00015006700)	BORCS8 (ENSMMNG00015006726)	MEF2B (ENSMMNG00015006749)	TMEM161A (ENSMMNG00015006783) ##22	SLC25A42 (ENSMMNG00015006831)	ARMC6 (ENSMMNG00015006856)	SUGP2 (ENSMMNG00015006879)	HOMER3 (ENSMMNG00015006915)	DDX49 (ENSMMNG00015006955)	COPE (ENSMMNG00015007007)	CERS1 (ENSMMNG00015007051)	GDF1 (ENSMMNG00015007086)	UPF1 (ENSMMNG00015007103)	COMP (ENSMMNG00015007143)	CRTC1 (ENSMMNG00015007220)	KLHL26 (ENSMMNG00015007349)	TMEM59L (ENSMMNG00015007375)	CRLF1 (ENSMMNG00015007421)	REX1BD (ENSMMNG00015007469)
Vaquita	MODERN SPECIES	14	LPAR2 (ENSPSNG00000000922)	ENSPSNG00000000937	ENSPSNG00000000965	CILP2 (ENSPSNG00000000993)	YJEFN3 (ENSPSNG00000001047)	TSSK6 (ENSPSNG00000001081)	GATAD2A (ENSPSNG00000001112)	MAU2 (ENSPSNG00000001203)	SUGP1 (ENSPSNG00000001311)	TM6SF2 (ENSPSNG00000001343)	HAPLN4 (ENSPSNG00000001367)	NCAN (ENSPSNG00000001532)	NR2C2AP (ENSPSNG00000001752)	RFXANK (ENSPSNG00000001779)	MEF2B (ENSPSNG00000001853)	TMEM161A (ENSPSNG00000001898) ##22	SLC25A42 (ENSPSNG00000001921)	ARMC6 (ENSPSNG00000001939)	SUGP2 (ENSPSNG00000001966)	HOMER3 (ENSPSNG00000002016)	DDX49 (ENSPSNG00000002062)	COPE (ENSPSNG00000002124)	CERS1 (ENSPSNG00000002156)	GDF1 (ENSPSNG00000002175)	UPF1 (ENSPSNG00000002213)	COMP (ENSPSNG00000002298)	CRTC1 (ENSPSNG00000002462)	KLHL26 (ENSPSNG00000002575)	TMEM59L (ENSPSNG00000002614)	CRLF1 (ENSPSNG00000002653)	UBA52 (ENSPSNG00000002675)
Dolphin	MODERN SPECIES	2220												NCAN (ENSTTRG00000007684)	NR2C2AP (ENSTTRG00000007679)	RFXANK (ENSTTRG00000007673)	MEF2B (ENSTTRG00000007659)	TMEM161A (ENSTTRG00000007641) ##22	SLC25A42 (ENSTTRG00000007625)
Sperm whale	MODERN SPECIES	138															MEF2B (ENSPCTG00005018720)	TMEM161A (ENSPCTG00005018968) ##22	SLC25A42 (ENSPCTG00005019060)	ARMC6 (ENSPCTG00005019113)
Blue whale	MODERN SPECIES	14	ENSBMSG00010002474	ENSBMSG00010002498	CILP2 (ENSBMSG00010002559)	YJEFN3 (ENSBMSG00010002588)	TSSK6 (ENSBMSG00010002611)	GATAD2A (ENSBMSG00010002620)	MAU2 (ENSBMSG00010002666)	SUGP1 (ENSBMSG00010002719)	TM6SF2 (ENSBMSG00010002725)	HAPLN4 (ENSBMSG00010002737)	NCAN (ENSBMSG00010002745)	NR2C2AP (ENSBMSG00010002762)	RFXANK (ENSBMSG00010002771)	ENSBMSG00010002783	MEF2B (ENSBMSG00010003849)	TMEM161A (ENSBMSG00010003877) ##22	SLC25A42 (ENSBMSG00010003900)	ARMC6 (ENSBMSG00010003914)	SUGP2 (ENSBMSG00010003931)	HOMER3 (ENSBMSG00010003958)	DDX49 (ENSBMSG00010004039)	COPE (ENSBMSG00010004064)	CERS1 (ENSBMSG00010004105)	GDF1 (ENSBMSG00010004120)	UPF1 (ENSBMSG00010004141)	COMP (ENSBMSG00010004199)	CRTC1 (ENSBMSG00010004257)	KLHL26 (ENSBMSG00010004285)	TMEM59L (ENSBMSG00010004290)	CRLF1 (ENSBMSG00010004297)	REX1BD (ENSBMSG00010004317)
Pecora	ANCESTRAL SPECIES		ENSGT00940000162643.a	ENSGT00390000008152.B.a	ENSGT00390000007227.b	ENSGT00390000000719	ENSGT00940000160464	ENSGT00390000004097.a	ENSGT00390000012198	ENSGT00410000025695.a	ENSGT00390000012913.a	ENSGT00940000160926	ENSGT00940000158649	ENSGT00390000017748	ENSGT00940000160753	ENSGT00390000014856	ENSGT00940000160699	ENSGT00390000000672.a.a ##22	ENSGT00940000158163	ENSGT00390000002913	ENSGT00410000025695.b	ENSGT00940000158081	ENSGT00730000111231	ENSGT00390000003478	ENSGT01030000234515.b	ENSGT00940000162926	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00390000011631
Yarkand deer	MODERN SPECIES	32	PBX4 (ENSCHYG00000011654)	CILP2 (ENSCHYG00000012104)	YJEFN3 (ENSCHYG00000012151)	NDUFA13 (ENSCHYG00000012188)	TSSK6 (ENSCHYG00000012255)	GATAD2A (ENSCHYG00000012277)	MAU2 (ENSCHYG00000012428)	SUGP1 (ENSCHYG00000012677)	TM6SF2 (ENSCHYG00000012851)	HAPLN4 (ENSCHYG00000012901)	NCAN (ENSCHYG00000012951)	NR2C2AP (ENSCHYG00000013015)	RFXANK (ENSCHYG00000013090)	BORCS8 (ENSCHYG00000013210)	MEF2B (ENSCHYG00000013347)	TMEM161A (ENSCHYG00000013806) ##22	SLC25A42 (ENSCHYG00000014137)	ARMC6 (ENSCHYG00000014214)	SUGP2 (ENSCHYG00000014360)	ENSCHYG00000014561	DDX49 (ENSCHYG00000015448)	CERS1 (ENSCHYG00000015529)	GDF1 (ENSCHYG00000015658)	UPF1 (ENSCHYG00000015773)	COMP (ENSCHYG00000016040)	CRTC1 (ENSCHYG00000016471)	KLHL26 (ENSCHYG00000017020)	TMEM59L (ENSCHYG00000017122)	CRLF1 (ENSCHYG00000017284)	REX1BD (ENSCHYG00000017438)	UBA52 (ENSCHYG00000017560)
Percora_a	ANCESTRAL SPECIES		ENSGT00940000162643.a	ENSGT00390000008152.B.a	ENSGT00390000007227.b	ENSGT00390000000719	ENSGT00940000160464	ENSGT00390000004097.a	ENSGT00390000012198	ENSGT00410000025695.a	ENSGT00390000012913.a	ENSGT00940000160926	ENSGT00940000158649	ENSGT00390000017748	ENSGT00940000160753	ENSGT00390000014856	ENSGT00940000160699	ENSGT00390000000672.a.a ##22	ENSGT00940000158163	ENSGT00390000002913	ENSGT00410000025695.b	ENSGT00940000158081	ENSGT00730000111231	ENSGT00390000003478	ENSGT01030000234515.b	ENSGT00940000162926	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00390000011631
Bovidae	ANCESTRAL SPECIES		ENSGT00940000162643.a	ENSGT00390000008152.B.a	ENSGT00390000007227.b	ENSGT00390000000719	ENSGT00940000160464	ENSGT00390000004097.a	ENSGT00390000012198	ENSGT00410000025695.a	ENSGT00390000012913.a	ENSGT00940000160926	ENSGT00940000158649	ENSGT00390000017748	ENSGT00940000160753	ENSGT00390000014856	ENSGT00940000160699	ENSGT00390000000672.a.a ##22	ENSGT00940000158163	ENSGT00390000002913	ENSGT00410000025695.b	ENSGT00940000158081	ENSGT00730000111231	ENSGT00390000003478	ENSGT01030000234515.b	ENSGT00940000162926	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00390000011631
Bovinae	ANCESTRAL SPECIES	34	ENSGT00940000162643.a	ENSGT00390000008152.B.a	ENSGT00390000007227.b	ENSGT00390000000719	ENSGT00940000160464	ENSGT00390000004097.a	ENSGT00390000012198	ENSGT00410000025695.a	ENSGT00390000012913.a	ENSGT00940000160926	ENSGT00940000158649	ENSGT00390000017748	ENSGT00940000160753	ENSGT00390000014856	ENSGT00940000160699	ENSGT00390000000672.a.a ##22	ENSGT00940000158163	ENSGT00390000002913	ENSGT00410000025695.b	ENSGT00940000158081	ENSGT00730000111231	ENSGT00390000003478	ENSGT01030000234515.b	ENSGT00940000162926	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00390000011631
Bos	ANCESTRAL SPECIES	34	ENSGT00940000162643.a	ENSGT00390000008152.B.a	ENSGT00390000007227.b	ENSGT00390000000719	ENSGT00940000160464	ENSGT00390000004097.a	ENSGT00390000012198	ENSGT00410000025695.a	ENSGT00390000012913.a	ENSGT00940000160926	ENSGT00940000158649	ENSGT00390000017748	ENSGT00940000160753	ENSGT00390000014856	ENSGT00940000160699	ENSGT00390000000672.a.a ##22	ENSGT00940000158163	ENSGT00390000002913	ENSGT00410000025695.b	ENSGT00940000158081	ENSGT00730000111231	ENSGT00390000003478	ENSGT01030000234515.b	ENSGT00940000162926	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00390000011631
Bos_b	ANCESTRAL SPECIES	36	ENSGT00940000162643.a	ENSGT00390000008152.B.a	ENSGT00390000007227.b	ENSGT00390000000719	ENSGT00940000160464	ENSGT00390000004097.a	ENSGT00390000012198	ENSGT00410000025695.a	ENSGT00390000012913.a	ENSGT00940000160926	ENSGT00940000158649	ENSGT00390000017748	ENSGT00940000160753	ENSGT00390000014856	ENSGT00940000160699	ENSGT00390000000672.a.a ##22	ENSGT00940000158163	ENSGT00390000002913	ENSGT00410000025695.b	ENSGT00940000158081	ENSGT00730000111231	ENSGT00390000003478	ENSGT01030000234515.b	ENSGT00940000162926	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00390000011631
Hybrid Bos Indicus	MODERN SPECIES	26	ATP13A1 (ENSBIXG00005011383)	GMIP (ENSBIXG00005011455)	LPAR2 (ENSBIXG00005011498)	PBX4 (ENSBIXG00005011533)	CILP2 (ENSBIXG00005011569)	GATAD2A (ENSBIXG00005011721)	MAU2 (ENSBIXG00005011825)	SUGP1 (ENSBIXG00005011882)	TM6SF2 (ENSBIXG00005011902)	HAPLN4 (ENSBIXG00005006424)	NCAN (ENSBIXG00005011939)	NR2C2AP (ENSBIXG00005011976)	RFXANK (ENSBIXG00005012032)	BORCS8 (ENSBIXG00005012065)	MEF2B (ENSBIXG00005012139)	TMEM161A (ENSBIXG00005007436) ##22	SLC25A42 (ENSBIXG00005012191)	ARMC6 (ENSBIXG00005012220)	SUGP2 (ENSBIXG00005001278)	HOMER3 (ENSBIXG00005000373)	DDX49 (ENSBIXG00005012358)	COPE (ENSBIXG00005012672)	UPF1 (ENSBIXG00005012808)	COMP (ENSBIXG00005012859)	CRTC1 (ENSBIXG00005013032)	KLHL26 (ENSBIXG00005001500)	TMEM59L (ENSBIXG00005013127)	CRLF1 (ENSBIXG00005001505)	REX1BD (ENSBIXG00005013181)	ENSBIXG00005013215	FKBP8 (ENSBIXG00005001526)
Cow	MODERN SPECIES	26	PBX4 (ENSBTAG00000009975)	CILP2 (ENSBTAG00000014969)	YJEFN3 (ENSBTAG00000014968)	NDUFA13 (ENSBTAG00000007812)	TSSK6 (ENSBTAG00000006649)	GATAD2A (ENSBTAG00000003034)	MAU2 (ENSBTAG00000006124)	SUGP1 (ENSBTAG00000006116)	TM6SF2 (ENSBTAG00000016042)	HAPLN4 (ENSBTAG00000001765)	NCAN (ENSBTAG00000001764)	NR2C2AP (ENSBTAG00000001763)	RFXANK (ENSBTAG00000001762)	BORCS8 (ENSBTAG00000025817)	MEF2B (ENSBTAG00000001818)	TMEM161A (ENSBTAG00000001817) ##22	SLC25A42 (ENSBTAG00000001816)	ARMC6 (ENSBTAG00000013291)	SUGP2 (ENSBTAG00000013288)	HOMER3 (ENSBTAG00000000813)	DDX49 (ENSBTAG00000000811)	COPE (ENSBTAG00000000810)	CERS1 (ENSBTAG00000037729)	GDF1 (ENSBTAG00000020923)	UPF1 (ENSBTAG00000020922)	COMP (ENSBTAG00000004630)	CRTC1 (ENSBTAG00000010379)	KLHL26 (ENSBTAG00000014114)	TMEM59L (ENSBTAG00000007698)	CRLF1 (ENSBTAG00000007741)	REX1BD (ENSBTAG00000007739)
Bos_a	ANCESTRAL SPECIES	29	ENSGT01050000244941.B.c	ENSGT00940000162643.a	ENSGT00390000008152.B.a	ENSGT00390000007227.b	ENSGT00940000160464	ENSGT00390000004097.a	ENSGT00390000012198	ENSGT00410000025695.a	ENSGT00390000012913.a	ENSGT00940000160926	ENSGT00940000158649	ENSGT00390000017748	ENSGT00940000160753	ENSGT00390000014856	ENSGT00940000160699	ENSGT00390000000672.a.a ##22	ENSGT00940000158163	ENSGT00390000002913	ENSGT00410000025695.b	ENSGT00940000158081	ENSGT00730000111231	ENSGT00390000003478	ENSGT01030000234515.b	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00390000011631	ENSGT00940000153593.c.a
Domestic yak	MODERN SPECIES	27	PBX4 (ENSBGRG00000002159)	CILP2 (ENSBGRG00000002130)	YJEFN3 (ENSBGRG00000002015)	TSSK6 (ENSBGRG00000001976)	GATAD2A (ENSBGRG00000001936)	ENSBGRG00000001911	MAU2 (ENSBGRG00000001879)	SUGP1 (ENSBGRG00000001817)	TM6SF2 (ENSBGRG00000001786)	HAPLN4 (ENSBGRG00000001768)	NCAN (ENSBGRG00000001688)	NR2C2AP (ENSBGRG00000001646)	RFXANK (ENSBGRG00000001549)	ENSBGRG00000001503	MEF2B (ENSBGRG00000001435)	TMEM161A (ENSBGRG00000001322) ##22	SLC25A42 (ENSBGRG00000001293)	ARMC6 (ENSBGRG00000001271)	SUGP2 (ENSBGRG00000001227)	ENSBGRG00000001213	HOMER3 (ENSBGRG00000001163)	DDX49 (ENSBGRG00000001122)	COPE (ENSBGRG00000001045)	CERS1 (ENSBGRG00000000977)	UPF1 (ENSBGRG00000000885)	COMP (ENSBGRG00000000772)	CRTC1 (ENSBGRG00000000542)	KLHL26 (ENSBGRG00000000466)	TMEM59L (ENSBGRG00000000427)	CRLF1 (ENSBGRG00000000399)	ENSBGRG00000026408
Wild yak	MODERN SPECIES	984								SUGP1 (ENSBMUG00000014735)	TM6SF2 (ENSBMUG00000014742)	ENSBMUG00000014766	NCAN (ENSBMUG00000014781)	NR2C2AP (ENSBMUG00000014819)	RFXANK (ENSBMUG00000014864)	BORCS8 (ENSBMUG00000014902)	MEF2B (ENSBMUG00000014926)	TMEM161A (ENSBMUG00000014965) ##22	SLC25A42 (ENSBMUG00000014988)	ARMC6 (ENSBMUG00000015012)	SUGP2 (ENSBMUG00000015048)	HOMER3 (ENSBMUG00000015101)	DDX49 (ENSBMUG00000015132)	COPE (ENSBMUG00000015145)	CERS1 (ENSBMUG00000015159)	UPF1 (ENSBMUG00000015177)	COMP (ENSBMUG00000015225)	CRTC1 (ENSBMUG00000015292)	KLHL26 (ENSBMUG00000015350)	TMEM59L (ENSBMUG00000015381)	CRLF1 (ENSBMUG00000015427)	REX1BD (ENSBMUG00000015467)	UBA52 (ENSBMUG00000015499)
American bison	MODERN SPECIES	3165	PBX4 (ENSBBBG00000015984)	CILP2 (ENSBBBG00000015975)	YJEFN3 (ENSBBBG00000015957)	NDUFA13 (ENSBBBG00000015950)	TSSK6 (ENSBBBG00000015942)	GATAD2A (ENSBBBG00000015939)	MAU2 (ENSBBBG00000003961)	SUGP1 (ENSBBBG00000015892)	TM6SF2 (ENSBBBG00000015869)	HAPLN4 (ENSBBBG00000015855)	NCAN (ENSBBBG00000003940)	NR2C2AP (ENSBBBG00000003931)	RFXANK (ENSBBBG00000015745)	ENSBBBG00000015701	MEF2B (ENSBBBG00000007138)	TMEM161A (ENSBBBG00000007455) ##22	ARMC6 (ENSBBBG00000015629)	SUGP2 (ENSBBBG00000003426)	ENSBBBG00000003456	ENSBBBG00000003467	DDX49 (ENSBBBG00000015616)	COPE (ENSBBBG00000015595)	CERS1 (ENSBBBG00000015545)	UPF1 (ENSBBBG00000003867)	COMP (ENSBBBG00000002699)	CRTC1 (ENSBBBG00000015471)	ENSBBBG00000015461	TMEM59L (ENSBBBG00000015452)	CRLF1 (ENSBBBG00000003846)	ENSBBBG00000015406	ENSBBBG00000002734
Caprinae	ANCESTRAL SPECIES	32	ENSGT00940000162643.a	ENSGT00390000008152.B.a	ENSGT00390000007227.b	ENSGT00390000000719	ENSGT00940000160464	ENSGT00390000004097.a	ENSGT00390000012198	ENSGT00410000025695.a	ENSGT00390000012913.a	ENSGT00940000160926	ENSGT00940000158649	ENSGT00390000017748	ENSGT00940000160753	ENSGT00390000014856	ENSGT00940000160699	ENSGT00390000000672.a.a ##22	ENSGT00940000158163	ENSGT00390000002913	ENSGT00410000025695.b	ENSGT00940000158081	ENSGT00730000111231	ENSGT00390000003478	ENSGT01030000234515.b	ENSGT00940000162926	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00390000011631
Rambouillet Sheep	MODERN SPECIES	21	GMIP (ENSOARG00020019185)	LPAR2 (ENSOARG00020019376)	CILP2 (ENSOARG00020019527)	YJEFN3 (ENSOARG00020019633)	NDUFA13 (ENSOARG00020019709)	TSSK6 (ENSOARG00020019749)	GATAD2A (ENSOARG00020019767)	MAU2 (ENSOARG00020019838)	SUGP1 (ENSOARG00020019993)	TM6SF2 (ENSOARG00020020089)	HAPLN4 (ENSOARG00020020166)	NR2C2AP (ENSOARG00020020240)	RFXANK (ENSOARG00020020308)	BORCS8 (ENSOARG00020020354)	MEF2B (ENSOARG00020020398)	TMEM161A (ENSOARG00020020857) ##22	SLC25A42 (ENSOARG00020020909)	ARMC6 (ENSOARG00020020947)	SUGP2 (ENSOARG00020021040)	ENSOARG00020021129	DDX49 (ENSOARG00020021548)	CERS1 (ENSOARG00020021615)	UPF1 (ENSOARG00020003352)	COMP (ENSOARG00020003569)	CRTC1 (ENSOARG00020003966)	KLHL26 (ENSOARG00020004115)	TMEM59L (ENSOARG00020004177)	CRLF1 (ENSOARG00020004211)	REX1BD (ENSOARG00020004269)	UBA52 (ENSOARG00020004308)	KXD1 (ENSOARG00020004349)
Goat	MODERN SPECIES	26	PBX4 (ENSCHIG00000020490)	CILP2 (ENSCHIG00000016599)	YJEFN3 (ENSCHIG00000022695)	NDUFA13 (ENSCHIG00000005106)	TSSK6 (ENSCHIG00000012857)	GATAD2A (ENSCHIG00000022449)	MAU2 (ENSCHIG00000018574)	SUGP1 (ENSCHIG00000024169)	TM6SF2 (ENSCHIG00000009497)	HAPLN4 (ENSCHIG00000017398)	NCAN (ENSCHIG00000023523)	NR2C2AP (ENSCHIG00000026754)	RFXANK (ENSCHIG00000009697)	BORCS8 (ENSCHIG00000023514)	MEF2B (ENSCHIG00000009022)	TMEM161A (ENSCHIG00000015703) ##22	SLC25A42 (ENSCHIG00000017224)	ARMC6 (ENSCHIG00000022745)	SUGP2 (ENSCHIG00000000571)	HOMER3 (ENSCHIG00000013425)	DDX49 (ENSCHIG00000019910)	COPE (ENSCHIG00000019197)	CERS1 (ENSCHIG00000021209)	GDF1 (ENSCHIG00000026655)	UPF1 (ENSCHIG00000011018)	COMP (ENSCHIG00000015152)	CRTC1 (ENSCHIG00000020510)	KLHL26 (ENSCHIG00000009198)	TMEM59L (ENSCHIG00000001269)	CRLF1 (ENSCHIG00000014402)	REX1BD (ENSCHIG00000025942)
Siberian musk deer	MODERN SPECIES	1231	CILP2 (ENSMMSG00000017925)	YJEFN3 (ENSMMSG00000017864)	ENSMMSG00000017802	TSSK6 (ENSMMSG00000017779)	ENSMMSG00000017748	GATAD2A (ENSMMSG00000017683)	MAU2 (ENSMMSG00000017598)	SUGP1 (ENSMMSG00000017541)	TM6SF2 (ENSMMSG00000017487)	HAPLN4 (ENSMMSG00000017463)	NCAN (ENSMMSG00000017015)	NR2C2AP (ENSMMSG00000016963)	RFXANK (ENSMMSG00000016859)	BORCS8 (ENSMMSG00000016823)	MEF2B (ENSMMSG00000016211)	TMEM161A (ENSMMSG00000016113) ##22	SLC25A42 (ENSMMSG00000022673)	ARMC6 (ENSMMSG00000022659)	SUGP2 (ENSMMSG00000022643)	HOMER3 (ENSMMSG00000022598)	DDX49 (ENSMMSG00000022565)	COPE (ENSMMSG00000022538)	CERS1 (ENSMMSG00000022516)	GDF1 (ENSMMSG00000022528)	UPF1 (ENSMMSG00000022501)	COMP (ENSMMSG00000022327)	CRTC1 (ENSMMSG00000022161)	KLHL26 (ENSMMSG00000022113)	TMEM59L (ENSMMSG00000022096)	CRLF1 (ENSMMSG00000022062)	REX1BD (ENSMMSG00000022031)
Camelidae	ANCESTRAL SPECIES	64	ENSGT01050000244941.B.c	ENSGT00940000162643.a	ENSGT00390000008152.B.a	ENSGT00390000007227.b	ENSGT00940000160464	ENSGT00390000004097.a	ENSGT00390000012198	ENSGT00410000025695.a	ENSGT00390000012913.a	ENSGT00940000160926	ENSGT00940000158649	ENSGT00390000017748	ENSGT00940000160753	ENSGT00390000014856	ENSGT00940000160699	ENSGT00390000000672.a.a ##22	ENSGT00940000158163	ENSGT00390000002913	ENSGT00410000025695.b	ENSGT00940000158081	ENSGT00730000111231	ENSGT00390000003478	ENSGT01030000234515.b	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00390000011631	ENSGT00530000064192.r
Arabian camel	MODERN SPECIES	14	LPAR2 (ENSCDRG00005011318)	PBX4 (ENSCDRG00005011358)	CILP2 (ENSCDRG00005011464)	YJEFN3 (ENSCDRG00005011508)	TSSK6 (ENSCDRG00005011623)	GATAD2A (ENSCDRG00005011647)	MAU2 (ENSCDRG00005011821)	SUGP1 (ENSCDRG00005011946)	TM6SF2 (ENSCDRG00005012037)	HAPLN4 (ENSCDRG00005012163)	NCAN (ENSCDRG00005012212)	NR2C2AP (ENSCDRG00005012299)	RFXANK (ENSCDRG00005012616)	ENSCDRG00005012691	MEF2B (ENSCDRG00005012755)	TMEM161A (ENSCDRG00005012779) ##22	SLC25A42 (ENSCDRG00005012927)	ARMC6 (ENSCDRG00005012979)	SUGP2 (ENSCDRG00005013031)	HOMER3 (ENSCDRG00005013258)	DDX49 (ENSCDRG00005013373)	COPE (ENSCDRG00005013441)	CERS1 (ENSCDRG00005013600)	UPF1 (ENSCDRG00005008931)	COMP (ENSCDRG00005009080)	CRTC1 (ENSCDRG00005009334)	KLHL26 (ENSCDRG00005009944)	TMEM59L (ENSCDRG00005009996)	CRLF1 (ENSCDRG00005010053)	REX1BD (ENSCDRG00005010167)	UBA52 (ENSCDRG00005010272)
Laurasiatheria_b	ANCESTRAL SPECIES	18	ENSGT00390000007227.b	ENSGT00960000189525	ENSGT00390000000719	ENSGT00940000160464	ENSGT01090000261752	ENSGT00390000004097.a	ENSGT00390000012198	ENSGT00410000025695.a	ENSGT00390000012913.a	ENSGT00940000160926	ENSGT00940000158649	ENSGT00390000017748	ENSGT00940000160753	ENSGT00390000014856	ENSGT00940000160699	ENSGT00390000000672.a.a ##22	ENSGT00940000158163	ENSGT00390000002913	ENSGT00410000025695.b	ENSGT00940000158081	ENSGT00730000111231	ENSGT00390000003478	ENSGT01030000234515.b	ENSGT00940000162926	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00910000147684
Carnivora	ANCESTRAL SPECIES	6	ENSGT00390000008152.B.a	ENSGT00390000007227.b	ENSGT00960000189525	ENSGT00390000000719	ENSGT00940000160464	ENSGT00390000004097.a	ENSGT00390000012198	ENSGT00410000025695.a	ENSGT00390000012913.a	ENSGT00940000160926	ENSGT00940000158649	ENSGT00390000017748	ENSGT00940000160753	ENSGT00390000014856	ENSGT00940000160699	ENSGT00390000000672.a.a ##22	ENSGT00940000158163	ENSGT00390000002913	ENSGT00410000025695.b	ENSGT00940000158081	ENSGT00730000111231	ENSGT00390000003478	ENSGT01030000234515.b	ENSGT00940000162926	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00910000147684
Caniformia	ANCESTRAL SPECIES	4	ENSGT00390000008152.B.a	ENSGT00390000007227.b	ENSGT00960000189525	ENSGT00390000000719	ENSGT00940000160464	ENSGT00390000004097.a	ENSGT00390000012198	ENSGT00410000025695.a	ENSGT00390000012913.a	ENSGT00940000160926	ENSGT00940000158649	ENSGT00390000017748	ENSGT00940000160753	ENSGT00390000014856	ENSGT00940000160699	ENSGT00390000000672.a.a ##22	ENSGT00940000158163	ENSGT00390000002913	ENSGT00410000025695.b	ENSGT00940000158081	ENSGT00730000111231	ENSGT00390000003478	ENSGT01030000234515.b	ENSGT00940000162926	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00390000011631
Caniformia_b	ANCESTRAL SPECIES	16	ENSGT00940000162643	ENSGT00390000008152.B.a	ENSGT00390000007227.b	ENSGT00390000000719	ENSGT00940000160464	ENSGT00390000004097.a	ENSGT00390000012198	ENSGT00410000025695.a	ENSGT00390000012913.a	ENSGT00940000160926	ENSGT00940000158649	ENSGT00390000017748	ENSGT00940000160753	ENSGT00390000014856	ENSGT00940000160699	ENSGT00390000000672.a.a ##22	ENSGT00940000158163	ENSGT00390000002913	ENSGT00410000025695.b	ENSGT00940000158081	ENSGT00730000111231	ENSGT00390000003478	ENSGT01030000234515.b	ENSGT00940000162926	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00390000011631
Ursidae	ANCESTRAL SPECIES	11	ENSGT00940000162643	ENSGT00390000008152.B.a	ENSGT00390000007227.b	ENSGT00390000000719	ENSGT00940000160464	ENSGT00390000004097.a	ENSGT00390000012198	ENSGT00410000025695.a	ENSGT00390000012913.a	ENSGT00940000160926	ENSGT00940000158649	ENSGT00390000017748	ENSGT00940000160753	ENSGT00390000014856	ENSGT00940000160699	ENSGT00390000000672.a.a ##22	ENSGT00940000158163	ENSGT00390000002913	ENSGT00410000025695.b	ENSGT00940000158081	ENSGT00730000111231	ENSGT00390000003478	ENSGT01030000234515.b	ENSGT00940000162926	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00390000011631
Ursus	ANCESTRAL SPECIES	5	ENSGT00940000162643	ENSGT00390000008152.B.a	ENSGT00390000007227.b	ENSGT00390000000719	ENSGT00940000160464	ENSGT00390000004097.a	ENSGT00390000012198	ENSGT00410000025695.a	ENSGT00390000012913.a	ENSGT00940000160926	ENSGT00940000158649	ENSGT00390000017748	ENSGT00940000160753	ENSGT00390000014856	ENSGT00940000160699	ENSGT00390000000672.a.a ##22	ENSGT00940000158163	ENSGT00390000002913	ENSGT00410000025695.b	ENSGT00940000158081	ENSGT00730000111231	ENSGT00390000003478	ENSGT01030000234515.b	ENSGT00940000162926	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00390000011631
American black bear	MODERN SPECIES		CILP2 (ENSUAMG00000000697)	YJEFN3 (ENSUAMG00000000690)	NDUFA13 (ENSUAMG00000000686)	TSSK6 (ENSUAMG00000000680)	GATAD2A (ENSUAMG00000000666)	ENSUAMG00000000653	MAU2 (ENSUAMG00000000016)	SUGP1 (ENSUAMG00000000010)	TM6SF2 (ENSUAMG00000000009)	HAPLN4 (ENSUAMG00000000008)	NCAN (ENSUAMG00000000007)	NR2C2AP (ENSUAMG00000000006)	RFXANK (ENSUAMG00000000005)	BORCS8 (ENSUAMG00000000004)	MEF2B (ENSUAMG00000000003)	TMEM161A (ENSUAMG00000000002) ##22	SLC25A42 (ENSUAMG00000000001)
Polar bear	MODERN SPECIES	255	GMIP (ENSUMAG00000006087)	LPAR2 (ENSUMAG00000006117)	PBX4 (ENSUMAG00000006125)	ENSUMAG00000006179	NDUFA13 (ENSUMAG00000006183)	TSSK6 (ENSUMAG00000006185)	GATAD2A (ENSUMAG00000006192)	MAU2 (ENSUMAG00000006229)	SUGP1 (ENSUMAG00000006358)	TM6SF2 (ENSUMAG00000006368)	NCAN (ENSUMAG00000006378)	NR2C2AP (ENSUMAG00000006411)	RFXANK (ENSUMAG00000006419)	BORCS8 (ENSUMAG00000006425)	MEF2B (ENSUMAG00000006437)	TMEM161A (ENSUMAG00000006455) ##22	SLC25A42 (ENSUMAG00000006458)	ARMC6 (ENSUMAG00000006462)	SUGP2 (ENSUMAG00000006467)	HOMER3 (ENSUMAG00000006477)	DDX49 (ENSUMAG00000006489)	COPE (ENSUMAG00000006505)	UPF1 (ENSUMAG00000006652)	COMP (ENSUMAG00000007436)	CRTC1 (ENSUMAG00000008860)	ENSUMAG00000008937	ENSUMAG00000008945	UBA52 (ENSUMAG00000008953)	KXD1 (ENSUMAG00000008955)	FKBP8 (ENSUMAG00000008964)	ELL (ENSUMAG00000008994)
Giant Panda	MODERN SPECIES	14	PBX4 (ENSAMEG00000011909)	CILP2 (ENSAMEG00000011906)	YJEFN3 (ENSAMEG00000030667)	NDUFA13 (ENSAMEG00000011893)	TSSK6 (ENSAMEG00000019351)	GATAD2A (ENSAMEG00000011882)	MAU2 (ENSAMEG00000011868)	SUGP1 (ENSAMEG00000011838)	TM6SF2 (ENSAMEG00000011811)	HAPLN4 (ENSAMEG00000027731)	NCAN (ENSAMEG00000011734)	NR2C2AP (ENSAMEG00000011727)	RFXANK (ENSAMEG00000011703)	BORCS8 (ENSAMEG00000011698)	MEF2B (ENSAMEG00000011682)	TMEM161A (ENSAMEG00000011655) ##22	SLC25A42 (ENSAMEG00000027218)	ARMC6 (ENSAMEG00000011621)	SUGP2 (ENSAMEG00000011613)	HOMER3 (ENSAMEG00000011595)	DDX49 (ENSAMEG00000011566)	COPE (ENSAMEG00000011524)	CERS1 (ENSAMEG00000011517)	UPF1 (ENSAMEG00000011474)	COMP (ENSAMEG00000011419)	CRTC1 (ENSAMEG00000011390)	KLHL26 (ENSAMEG00000011385)	TMEM59L (ENSAMEG00000011379)	CRLF1 (ENSAMEG00000011375)	REX1BD (ENSAMEG00000011371)	UBA52 (ENSAMEG00000011356)
Mustelinae	ANCESTRAL SPECIES	10	ENSGT00940000162643	ENSGT00390000008152.B.a	ENSGT00390000007227.b	ENSGT00390000000719	ENSGT00940000160464	ENSGT00390000004097.a	ENSGT00390000012198	ENSGT00410000025695.a	ENSGT00390000012913.a	ENSGT00940000160926	ENSGT00940000158649	ENSGT00390000017748	ENSGT00940000160753	ENSGT00390000014856	ENSGT00940000160699	ENSGT00390000000672.a.a ##22	ENSGT00940000158163	ENSGT00390000002913	ENSGT00410000025695.b	ENSGT00940000158081	ENSGT00730000111231	ENSGT00390000003478	ENSGT01030000234515.b	ENSGT00940000162926	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00390000011631
American mink	MODERN SPECIES	58	PBX4 (ENSNVIG00000020863)	CILP2 (ENSNVIG00000020847)	YJEFN3 (ENSNVIG00000020838)	NDUFA13 (ENSNVIG00000020832)	TSSK6 (ENSNVIG00000020829)	GATAD2A (ENSNVIG00000020782)	MAU2 (ENSNVIG00000020762)	SUGP1 (ENSNVIG00000020747)	TM6SF2 (ENSNVIG00000020733)	HAPLN4 (ENSNVIG00000020713)	NCAN (ENSNVIG00000020377)	NR2CA (ENSNVIG00000020303)	RFXANK (ENSNVIG00000020264)	BORCS8 (ENSNVIG00000020221)	MEF2B (ENSNVIG00000020206)	TMEM161A (ENSNVIG00000020180) ##22	S2542 (ENSNVIG00000020166)	ARMC6 (ENSNVIG00000020143)	SUGP2 (ENSNVIG00000020116)	HOMER3 (ENSNVIG00000020032)	DDX49 (ENSNVIG00000020003)	COPE (ENSNVIG00000019958)	CERS1 (ENSNVIG00000019939)	GDF1 (ENSNVIG00000019930)	UPF1 (ENSNVIG00000019863)	COMP (ENSNVIG00000018415)	CRTC1 (ENSNVIG00000018294)	KLHL26 (ENSNVIG00000018276)	TMEM59L (ENSNVIG00000018259)	CRLF1 (ENSNVIG00000018244)	REX1BD (ENSNVIG00000018234)
Ferret	MODERN SPECIES	238	LPAR2 (ENSMPUG00000015364)	PBX4 (ENSMPUG00000015365)	CILP2 (ENSMPUG00000015383)	YJEFN3 (ENSMPUG00000015390)	TSSK6 (ENSMPUG00000019662)	GATAD2A (ENSMPUG00000015399)	MAU2 (ENSMPUG00000015402)	SUGP1 (ENSMPUG00000015404)	TM6SF2 (ENSMPUG00000015407)	HAPLN4 (ENSMPUG00000015424)	NCAN (ENSMPUG00000015433)	NR2C2AP (ENSMPUG00000015462)	RFXANK (ENSMPUG00000015469)	BORCS8 (ENSMPUG00000015471)	MEF2B (ENSMPUG00000015473)	TMEM161A (ENSMPUG00000015475) ##22	SLC25A42 (ENSMPUG00000015477)	SUGP2 (ENSMPUG00000015478)	HOMER3 (ENSMPUG00000015484)	DDX49 (ENSMPUG00000015485)	COPE (ENSMPUG00000015486)	CERS1 (ENSMPUG00000015497)	GDF1 (ENSMPUG00000015514)	UPF1 (ENSMPUG00000015516)	COMP (ENSMPUG00000015518)	CRTC1 (ENSMPUG00000015520)	KLHL26 (ENSMPUG00000015521)	TMEM59L (ENSMPUG00000015522)	CRLF1 (ENSMPUG00000015524)	REX1BD (ENSMPUG00000015526)	ENSMPUG00000015527
Canidae	ANCESTRAL SPECIES		ENSGT00390000008152.B.a	ENSGT00390000007227.b	ENSGT00960000189525	ENSGT00390000000719	ENSGT00940000160464	ENSGT00390000004097.a	ENSGT00390000012198	ENSGT00410000025695.a	ENSGT00390000012913.a	ENSGT00940000160926	ENSGT00940000158649	ENSGT00390000017748	ENSGT00940000160753	ENSGT00390000014856	ENSGT00940000160699	ENSGT00390000000672.a.a ##22	ENSGT00940000158163	ENSGT00390000002913	ENSGT00410000025695.b	ENSGT00940000158081	ENSGT00730000111231	ENSGT00390000003478.b	ENSGT01030000234515.b	ENSGT00940000162926	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00390000011631
Red fox	MODERN SPECIES	5	PBX4 (ENSVVUG00000007478)	CILP2 (ENSVVUG00000007489)	YJEFN3 (ENSVVUG00000007502)	NDUFA13 (ENSVVUG00000007513)	TSSK6 (ENSVVUG00000007516)	GATAD2A (ENSVVUG00000007522)	MAU2 (ENSVVUG00000007527)	SUGP1 (ENSVVUG00000007569)	TM6SF2 (ENSVVUG00000007584)	HAPLN4 (ENSVVUG00000007594)	NCAN (ENSVVUG00000007597)	NR2C2AP (ENSVVUG00000007609)	RFXANK (ENSVVUG00000007633)	BORCS8 (ENSVVUG00000007667)	MEF2B (ENSVVUG00000007672)	TMEM161A (ENSVVUG00000007683) ##22	SLC25A42 (ENSVVUG00000007728)	ARMC6 (ENSVVUG00000007731)	SUGP2 (ENSVVUG00000007744)	HOMER3 (ENSVVUG00000007758)	DDX49 (ENSVVUG00000007767)	ENSVVUG00000007777	CERS1 (ENSVVUG00000007783)	UPF1 (ENSVVUG00000007797)	ENSVVUG00000007818	CRTC1 (ENSVVUG00000007833)	KLHL26 (ENSVVUG00000007964)	TMEM59L (ENSVVUG00000007974)	CRLF1 (ENSVVUG00000007976)	REX1BD (ENSVVUG00000007980)	UBA52 (ENSVVUG00000007989)
Canis_lupus	ANCESTRAL SPECIES	1	ENSGT00390000008152.B.a	ENSGT00390000007227.b	ENSGT00960000189525	ENSGT00390000000719	ENSGT00940000160464	ENSGT00390000004097.a	ENSGT00390000012198	ENSGT00410000025695.a	ENSGT00390000012913.a	ENSGT00940000160926	ENSGT00940000158649	ENSGT00390000017748	ENSGT00940000160753	ENSGT00390000014856	ENSGT00940000160699	ENSGT00390000000672.a.a ##22	ENSGT00940000158163	ENSGT00390000002913	ENSGT00410000025695.b	ENSGT00940000158081	ENSGT00730000111231	ENSGT00390000003478.b	ENSGT01030000234515.b	ENSGT00940000162926	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00390000011631
Dingo	MODERN SPECIES	112	CILP2 (ENSCAFG00020012728)	YJEFN3 (ENSCAFG00020012724)	ENSCAFG00020012723	NDUFA13 (ENSCAFG00020012721)	TSSK6 (ENSCAFG00020012717)	GATAD2A (ENSCAFG00020012715)	MAU2 (ENSCAFG00020012543)	SUGP1 (ENSCAFG00020012508)	TM6SF2 (ENSCAFG00020012504)	HAPLN4 (ENSCAFG00020012500)	NCAN (ENSCAFG00020012454)	NR2C2AP (ENSCAFG00020012443)	RFXANK (ENSCAFG00020012437)	BORCS8 (ENSCAFG00020012435)	MEF2B (ENSCAFG00020012425)	TMEM161A (ENSCAFG00020012412) ##22	SLC25A42 (ENSCAFG00020012408)	ARMC6 (ENSCAFG00020012404)	SUGP2 (ENSCAFG00020012392)	HOMER3 (ENSCAFG00020012389)	DDX49 (ENSCAFG00020012375)	COPE (ENSCAFG00020012363)	CERS1 (ENSCAFG00020012351)	GDF1 (ENSCAFG00020012350)	UPF1 (ENSCAFG00020012347)	COMP (ENSCAFG00020012328)	CRTC1 (ENSCAFG00020012293)	KLHL26 (ENSCAFG00020012290)	TMEM59L (ENSCAFG00020012289)	CRLF1 (ENSCAFG00020012282)	REX1BD (ENSCAFG00020012279)
Dog	MODERN SPECIES	12	PBX4 (ENSCAFG00845014230)	CILP2 (ENSCAFG00845014273)	YJEFN3 (ENSCAFG00845014306)	NDUFA13 (ENSCAFG00845014336)	TSSK6 (ENSCAFG00845014349)	GATAD2A (ENSCAFG00845014383)	MAU2 (ENSCAFG00845014470)	SUGP1 (ENSCAFG00845014514)	TM6SF2 (ENSCAFG00845014561)	HAPLN4 (ENSCAFG00845014588)	NCAN (ENSCAFG00845014625)	RFXANK (ENSCAFG00845014775)	NR2C2AP (ENSCAFG00845018085)	BORCS8 (ENSCAFG00845018185)	MEF2B (ENSCAFG00845018253)	TMEM161A (ENSCAFG00845018423) ##22	SLC25A42 (ENSCAFG00845018653)	ARMC6 (ENSCAFG00845018765)	SUGP2 (ENSCAFG00845018888)	HOMER3 (ENSCAFG00845019115)	DDX49 (ENSCAFG00845019266)	COPE (ENSCAFG00845019400)	CERS1 (ENSCAFG00845019662)	GDF1 (ENSCAFG00845019828)	UPF1 (ENSCAFG00845019866)	COMP (ENSCAFG00845020025)	ENSCAFG00845020236	CRTC1 (ENSCAFG00845020362)	KLHL26 (ENSCAFG00845020669)	CRLF1 (ENSCAFG00845020775)	ENSCAFG00845020838
Felidae	ANCESTRAL SPECIES	17	ENSGT00940000162643	ENSGT00390000008152.B.a	ENSGT00390000007227.b	ENSGT00390000000719	ENSGT00940000160464	ENSGT00390000004097.a	ENSGT00390000012198	ENSGT00410000025695.a	ENSGT00390000012913.a	ENSGT00940000160926	ENSGT00940000158649	ENSGT00390000017748	ENSGT00940000160753	ENSGT00390000014856	ENSGT00940000160699	ENSGT00390000000672.a.a ##22	ENSGT00940000158163	ENSGT00390000002913	ENSGT00410000025695.b	ENSGT00940000158081	ENSGT00730000111231	ENSGT00390000003478	ENSGT01030000234515.b	ENSGT00940000162926	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00910000147684
Panthera	ANCESTRAL SPECIES	1	ENSGT00940000162643	ENSGT00390000008152.B.a	ENSGT00390000007227.b	ENSGT00390000000719	ENSGT00940000160464	ENSGT00390000004097.a	ENSGT00390000012198	ENSGT00410000025695.a	ENSGT00390000012913.a	ENSGT00940000160926	ENSGT00940000158649	ENSGT00390000017748	ENSGT00940000160753	ENSGT00390000014856	ENSGT00940000160699	ENSGT00390000000672.a.a ##22	ENSGT00940000158163	ENSGT00390000002913	ENSGT00410000025695.b	ENSGT00940000158081	ENSGT00730000111231	ENSGT00390000003478	ENSGT01030000234515.b	ENSGT00940000162926	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00910000147684
Panthera_a	ANCESTRAL SPECIES		ENSGT00940000162643	ENSGT00390000008152.B.a	ENSGT00390000007227.b	ENSGT00390000000719	ENSGT00940000160464	ENSGT00390000004097.a	ENSGT00390000012198	ENSGT00410000025695.a	ENSGT00390000012913.a	ENSGT00940000160926	ENSGT00940000158649	ENSGT00390000017748	ENSGT00940000160753	ENSGT00390000014856	ENSGT00940000160699	ENSGT00390000000672.a.a ##22	ENSGT00940000158163	ENSGT00390000002913	ENSGT00410000025695.b	ENSGT00940000158081	ENSGT00730000111231	ENSGT00390000003478	ENSGT01030000234515.b	ENSGT00940000162926	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00910000147684
lion	MODERN SPECIES	2	PBX4 (ENSPLOG00000001560)	CILP2 (ENSPLOG00000001532)	YJEFN3 (ENSPLOG00000001517)	NDUFA13 (ENSPLOG00000001502)	TSSK6 (ENSPLOG00000001493)	GATAD2A (ENSPLOG00000001463)	MAU2 (ENSPLOG00000001424)	SUGP1 (ENSPLOG00000001334)	TM6SF2 (ENSPLOG00000001308)	HAPLN4 (ENSPLOG00000001286)	NCAN (ENSPLOG00000001120)	ENSPLOG00000000980	RFXANK (ENSPLOG00000000919)	BORCS8 (ENSPLOG00000000887)	MEF2B (ENSPLOG00000000863)	TMEM161A (ENSPLOG00000000833) ##22	SLC25A42 (ENSPLOG00000000808)	ARMC6 (ENSPLOG00000000792)	SUGP2 (ENSPLOG00000000772)	HOMER3 (ENSPLOG00000000722)	DDX49 (ENSPLOG00000000667)	COPE (ENSPLOG00000000628)	CERS1 (ENSPLOG00000000599)	GDF1 (ENSPLOG00000000580)	UPF1 (ENSPLOG00000000562)	COMP (ENSPLOG00000000492)	CRTC1 (ENSPLOG00000000409)	KLHL26 (ENSPLOG00000000360)	TMEM59L (ENSPLOG00000000339)	CRLF1 (ENSPLOG00000000319)	ENSPLOG00000000303
leopard	MODERN SPECIES	68	LPAR2 (ENSPPRG00000018123)	PBX4 (ENSPPRG00000020424)	CILP2 (ENSPPRG00000023737)	YJEFN3 (ENSPPRG00000023619)	NDUFA13 (ENSPPRG00000022807)	TSSK6 (ENSPPRG00000016235)	GATAD2A (ENSPPRG00000000270)	MAU2 (ENSPPRG00000000643)	SUGP1 (ENSPPRG00000000880)	TM6SF2 (ENSPPRG00000001208)	HAPLN4 (ENSPPRG00000001581)	NR2C2AP (ENSPPRG00000003111)	RFXANK (ENSPPRG00000004266)	BORCS8 (ENSPPRG00000004580)	MEF2B (ENSPPRG00000006317)	TMEM161A (ENSPPRG00000008638) ##22	SLC25A42 (ENSPPRG00000008936)	ARMC6 (ENSPPRG00000009582)	SUGP2 (ENSPPRG00000010924)	HOMER3 (ENSPPRG00000013004)	DDX49 (ENSPPRG00000013274)	COPE (ENSPPRG00000019668)	CERS1 (ENSPPRG00000021419)	GDF1 (ENSPPRG00000024438)	UPF1 (ENSPPRG00000023470)	COMP (ENSPPRG00000000723)	CRTC1 (ENSPPRG00000001977)	KLHL26 (ENSPPRG00000003359)	TMEM59L (ENSPPRG00000003959)	CRLF1 (ENSPPRG00000004235)	REX1BD (ENSPPRG00000004571)
Tiger	MODERN SPECIES	281	LPAR2 (ENSPTIG00000013412)	PBX4 (ENSPTIG00000013405)	CILP2 (ENSPTIG00000013349)	YJEFN3 (ENSPTIG00000013321)	NDUFA13 (ENSPTIG00000013303)	TSSK6 (ENSPTIG00000006514)	GATAD2A (ENSPTIG00000013272)	MAU2 (ENSPTIG00000013179)	SUGP1 (ENSPTIG00000013061)	TM6SF2 (ENSPTIG00000013026)	HAPLN4 (ENSPTIG00000013017)	NR2C2AP (ENSPTIG00000012962)	RFXANK (ENSPTIG00000012655)	BORCS8 (ENSPTIG00000012610)	MEF2B (ENSPTIG00000012475)	TMEM161A (ENSPTIG00000012395) ##22	SLC25A42 (ENSPTIG00000012354)	ARMC6 (ENSPTIG00000012073)	SUGP2 (ENSPTIG00000012003)	HOMER3 (ENSPTIG00000011533)	DDX49 (ENSPTIG00000011259)	COPE (ENSPTIG00000010957)	CERS1 (ENSPTIG00000010849)	GDF1 (ENSPTIG00000010670)	UPF1 (ENSPTIG00000010159)	ENSPTIG00000010043	CRTC1 (ENSPTIG00000009427)	ENSPTIG00000009351	ENSPTIG00000009230	TMEM59L (ENSPTIG00000009187)	CRLF1 (ENSPTIG00000009041)
Cat	MODERN SPECIES	1	LPAR2 (ENSFCAG00000014538)	PBX4 (ENSFCAG00000014536)	CILP2 (ENSFCAG00000014331)	YJEFN3 (ENSFCAG00000014330)	NDUFA13 (ENSFCAG00000014329)	TSSK6 (ENSFCAG00000014328)	GATAD2A (ENSFCAG00000014327)	MAU2 (ENSFCAG00000009780)	SUGP1 (ENSFCAG00000009779)	HAPLN4 (ENSFCAG00000022898)	NCAN (ENSFCAG00000008376)	NR2C2AP (ENSFCAG00000009777)	RFXANK (ENSFCAG00000009775)	BORCS8 (ENSFCAG00000047348)	MEF2B (ENSFCAG00000009774)	TMEM161A (ENSFCAG00000009771) ##22	SLC25A42 (ENSFCAG00000009770)	ARMC6 (ENSFCAG00000009767)	SUGP2 (ENSFCAG00000009765)	HOMER3 (ENSFCAG00000009762)	DDX49 (ENSFCAG00000009760)	CERS1 (ENSFCAG00000023920)	UPF1 (ENSFCAG00000009757)	COMP (ENSFCAG00000009754)	CRTC1 (ENSFCAG00000009752)	KLHL26 (ENSFCAG00000042696)	TMEM59L (ENSFCAG00000009749)	CRLF1 (ENSFCAG00000009747)	ENSFCAG00000033106	REX1BD (ENSFCAG00000024240)	UBA52 (ENSFCAG00000009745)
Laurasiatheria_c	ANCESTRAL SPECIES	16	ENSGT00390000008152.B.a	ENSGT00390000007227.b	ENSGT00390000000719	ENSGT00940000160464	ENSGT01090000261752	ENSGT00390000004097.a	ENSGT00390000012198	ENSGT00410000025695.a	ENSGT00390000012913.a	ENSGT00940000160926	ENSGT00940000158649	ENSGT00390000017748	ENSGT00940000160753	ENSGT00390000014856	ENSGT00940000160699	ENSGT00390000000672.a.a ##22	ENSGT00940000158163	ENSGT00390000002913	ENSGT00410000025695.b	ENSGT00940000158081	ENSGT00730000111231	ENSGT00390000003478	ENSGT01030000234515.b	ENSGT00940000162926	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00390000011631
Equus	ANCESTRAL SPECIES	23	ENSGT01050000244941.B.c	ENSGT00940000162643	ENSGT00390000008152.B.a	ENSGT00390000007227.b	ENSGT00940000160464	ENSGT01090000261752	ENSGT00390000004097.a	ENSGT00390000012198	ENSGT00410000025695.a	ENSGT00940000160926	ENSGT00940000158649	ENSGT00390000017748	ENSGT00940000160753	ENSGT00390000014856	ENSGT00940000160699	ENSGT00390000000672.a.a ##22	ENSGT00940000158163	ENSGT00390000002913	ENSGT00410000025695.b	ENSGT00940000158081	ENSGT00730000111231	ENSGT00390000003478	ENSGT01030000234515.b	ENSGT00940000162926	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00390000011631
Horse	MODERN SPECIES	13	LPAR2 (ENSECAG00000009148)	ENSECAG00000044009	CILP2 (ENSECAG00000000250)	YJEFN3 (ENSECAG00000018123)	TSSK6 (ENSECAG00000051056)	ENSECAG00000017590	GATAD2A (ENSECAG00000012875)	MAU2 (ENSECAG00000001359)	SUGP1 (ENSECAG00000013871)	HAPLN4 (ENSECAG00000020045)	NCAN (ENSECAG00000016115)	NR2C2AP (ENSECAG00000015219)	RFXANK (ENSECAG00000009442)	BORCS8 (ENSECAG00000007592)	MEF2B (ENSECAG00000022642)	TMEM161A (ENSECAG00000013963) ##22	SLC25A42 (ENSECAG00000011367)	ARMC6 (ENSECAG00000006428)	SUGP2 (ENSECAG00000000129)	HOMER3 (ENSECAG00000023105)	DDX49 (ENSECAG00000012194)	COPE (ENSECAG00000024390)	CERS1 (ENSECAG00000052582)	GDF1 (ENSECAG00000026851)	UPF1 (ENSECAG00000010639)	COMP (ENSECAG00000000336)	CRTC1 (ENSECAG00000012748)	KLHL26 (ENSECAG00000046223)	TMEM59L (ENSECAG00000000133)	REX1BD (ENSECAG00000021433)	UBA52 (ENSECAG00000020660)
Donkey	MODERN SPECIES		LPAR2 (ENSEASG00005031542)	ENSEASG00005033171	CILP2 (ENSEASG00005006616)	YJEFN3 (ENSEASG00005006613)	ENSEASG00005028100	TSSK6 (ENSEASG00005006607)	GATAD2A (ENSEASG00005006602)	MAU2 (ENSEASG00005006596)	SUGP1 (ENSEASG00005006593)	HAPLN4 (ENSEASG00005006590)	NCAN (ENSEASG00005006587)	NR2C2AP (ENSEASG00005027263)	RFXANK (ENSEASG00005006582)	BORCS8 (ENSEASG00005006580)	MEF2B (ENSEASG00005006578)	TMEM161A (ENSEASG00005006575) ##22	SLC25A42 (ENSEASG00005006570)	ARMC6 (ENSEASG00005006568)	SUGP2 (ENSEASG00005006565)	HOMER3 (ENSEASG00005006562)	DDX49 (ENSEASG00005006560)	COPE (ENSEASG00005006557)	CERS1 (ENSEASG00005030456)	GDF1 (ENSEASG00005029430)	UPF1 (ENSEASG00005006549)	COMP (ENSEASG00005006320)	CRTC1 (ENSEASG00005006280)	KLHL26 (ENSEASG00005006276)	TMEM59L (ENSEASG00005006274)	CRLF1 (ENSEASG00005006270)	ENSEASG00005025213
Chiroptera	ANCESTRAL SPECIES	44	ENSGT00940000162643	ENSGT00390000008152.B.a	ENSGT00390000007227.b	ENSGT00390000000719	ENSGT00940000160464	ENSGT00390000004097.a	ENSGT00390000012198	ENSGT00410000025695.a	ENSGT00390000012913.a	ENSGT00940000160926	ENSGT00940000158649	ENSGT00390000017748	ENSGT00940000160753	ENSGT00390000014856	ENSGT00940000160699	ENSGT00390000000672.a.a ##22	ENSGT00940000158163	ENSGT00390000002913	ENSGT00410000025695.b	ENSGT00940000158081	ENSGT00730000111231	ENSGT00390000003478	ENSGT01030000234515.b	ENSGT00940000162926	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00390000011631
Microchiroptera	ANCESTRAL SPECIES	43	ENSGT00940000162643	ENSGT00390000008152.B.a	ENSGT00390000007227.b	ENSGT00390000000719	ENSGT00940000160464	ENSGT00390000004097.a	ENSGT00390000012198	ENSGT00410000025695.a	ENSGT00390000012913.a	ENSGT00940000160926	ENSGT00940000158649	ENSGT00390000017748	ENSGT00940000160753	ENSGT00390000014856	ENSGT00940000160699	ENSGT00390000000672.a.a ##22	ENSGT00940000158163	ENSGT00390000002913	ENSGT00410000025695.b	ENSGT00940000158081	ENSGT00730000111231	ENSGT00390000003478	ENSGT01030000234515.b	ENSGT00940000162926	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00390000011631
Greater horseshoe bat	MODERN SPECIES	9	PBX4 (ENSRFEG00010006894)	CILP2 (ENSRFEG00010006782)	YJEFN3 (ENSRFEG00010006740)	NDUFA13 (ENSRFEG00010006692)	TSSK6 (ENSRFEG00010006656)	GATAD2A (ENSRFEG00010006588)	MAU2 (ENSRFEG00010006479)	SUGP1 (ENSRFEG00010006391)	TM6SF2 (ENSRFEG00010006340)	HAPLN4 (ENSRFEG00010006311)	NCAN (ENSRFEG00010006275)	NR2C2AP (ENSRFEG00010006230)	RFXANK (ENSRFEG00010006139)	BORCS8 (ENSRFEG00010006052)	MEF2B (ENSRFEG00010005974)	TMEM161A (ENSRFEG00010005885) ##22	SLC25A42 (ENSRFEG00010005823)	ARMC6 (ENSRFEG00010005797)	SUGP2 (ENSRFEG00010005746)	HOMER3 (ENSRFEG00010005693)	DDX49 (ENSRFEG00010005585)	CERS1 (ENSRFEG00010005439)	GDF1 (ENSRFEG00010020888)	UPF1 (ENSRFEG00010020838)	COMP (ENSRFEG00010020665)	CRTC1 (ENSRFEG00010020465)	KLHL26 (ENSRFEG00010020386)	TMEM59L (ENSRFEG00010020368)	CRLF1 (ENSRFEG00010020301)	ENSRFEG00010020261	KXD1 (ENSRFEG00010020232)
Microbat	MODERN SPECIES	1248	LPAR2 (ENSMLUG00000007886)	CILP2 (ENSMLUG00000017369)	YJEFN3 (ENSMLUG00000017368)	NDUFA13 (ENSMLUG00000017367)	TSSK6 (ENSMLUG00000017365)	GATAD2A (ENSMLUG00000017364)	MAU2 (ENSMLUG00000017362)	SUGP1 (ENSMLUG00000017360)	TM6SF2 (ENSMLUG00000027634)	HAPLN4 (ENSMLUG00000017358)	NCAN (ENSMLUG00000017356)	NR2C2AP (ENSMLUG00000017355)	RFXANK (ENSMLUG00000017354)	BORCS8 (ENSMLUG00000025095)	MEF2B (ENSMLUG00000003299)	TMEM161A (ENSMLUG00000017352) ##22	SLC25A42 (ENSMLUG00000012208)	ENSMLUG00000012203	SUGP2 (ENSMLUG00000012189)	ENSMLUG00000025755	HOMER3 (ENSMLUG00000012170)	DDX49 (ENSMLUG00000012159)	COPE (ENSMLUG00000012147)	ENSMLUG00000026905	ENSMLUG00000012140	UPF1 (ENSMLUG00000012122)	COMP (ENSMLUG00000012249)	CRTC1 (ENSMLUG00000012234)	KLHL26 (ENSMLUG00000003470)	ENSMLUG00000028871	CRLF1 (ENSMLUG00000002437)
Megabat	MODERN SPECIES	1689																TMEM161A (ENSPVAG00000005055) ##22	SLC25A42 (ENSPVAG00000005053)	ARMC6 (ENSPVAG00000005049)	SUGP2 (ENSPVAG00000005047)
Atlantogenata	ANCESTRAL SPECIES	42	ENSGT00940000162643	ENSGT00390000008152.B.a	ENSGT00390000007227.b	ENSGT00390000000719	ENSGT00940000160464	ENSGT00390000004097.a	ENSGT00390000012198	ENSGT00410000025695.a	ENSGT00390000012913.a	ENSGT00940000160926	ENSGT00940000158649	ENSGT00390000017748	ENSGT00940000160753	ENSGT00390000014856	ENSGT00940000160699	ENSGT00390000000672.a.a ##22	ENSGT00940000158163	ENSGT00390000002913	ENSGT00410000025695.b	ENSGT00940000158081	ENSGT00730000111231	ENSGT00390000003478	ENSGT00940000162926	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00390000011631	ENSGT00940000153593.c.a
Afrotheria	ANCESTRAL SPECIES	45	ENSGT00940000162643	ENSGT00390000008152.B.a	ENSGT00390000007227.b	ENSGT00390000000719	ENSGT00940000160464	ENSGT00390000004097.a	ENSGT00390000012198	ENSGT00410000025695.a	ENSGT00390000012913.a	ENSGT00940000160926	ENSGT00940000158649	ENSGT00390000017748	ENSGT00940000160753	ENSGT00390000014856	ENSGT00940000160699	ENSGT00390000000672.a.a ##22	ENSGT00940000158163	ENSGT00390000002913	ENSGT00410000025695.b	ENSGT00940000158081	ENSGT00730000111231	ENSGT00390000003478	ENSGT00940000162926	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00390000011631	ENSGT00940000153593.c.a
Afrotheria_a	ANCESTRAL SPECIES	44	ENSGT00940000162643	ENSGT00390000008152.B.a	ENSGT00390000007227.b	ENSGT00390000000719	ENSGT00940000160464	ENSGT00390000004097.a	ENSGT00390000012198	ENSGT00410000025695.a	ENSGT00390000012913.a	ENSGT00940000160926	ENSGT00940000158649	ENSGT00390000017748	ENSGT00940000160753	ENSGT00390000014856	ENSGT00940000160699	ENSGT00390000000672.a.a ##22	ENSGT00940000158163	ENSGT00390000002913	ENSGT00410000025695.b	ENSGT00940000158081	ENSGT00730000111231	ENSGT00390000003478	ENSGT00940000162926	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00390000011631	ENSGT00940000153593.c.a
Elephant	MODERN SPECIES	270	CILP2 (ENSLAFG00000025674)	YJEFN3 (ENSLAFG00000009481)	NDUFA13 (ENSLAFG00000022064)	TSSK6 (ENSLAFG00000027015)	GATAD2A (ENSLAFG00000009470)	MAU2 (ENSLAFG00000021412)	SUGP1 (ENSLAFG00000017363)	TM6SF2 (ENSLAFG00000021853)	HAPLN4 (ENSLAFG00000031107)	NCAN (ENSLAFG00000015356)	NR2C2AP (ENSLAFG00000017559)	RFXANK (ENSLAFG00000017554)	BORCS8 (ENSLAFG00000031264)	ENSLAFG00000026493	MEF2B (ENSLAFG00000029184)	TMEM161A (ENSLAFG00000012976) ##22	SLC25A42 (ENSLAFG00000003608)	ARMC6 (ENSLAFG00000021876)	SUGP2 (ENSLAFG00000018646)	CRLF1 (ENSLAFG00000008358)	HOMER3 (ENSLAFG00000002936)	DDX49 (ENSLAFG00000002934)	COPE (ENSLAFG00000002932)	GDF1 (ENSLAFG00000027424)	UPF1 (ENSLAFG00000014963)	COMP (ENSLAFG00000010855)	CRTC1 (ENSLAFG00000003043)	KLHL26 (ENSLAFG00000003041)	TMEM59L (ENSLAFG00000015467)	REX1BD (ENSLAFG00000008356)	UBA52 (ENSLAFG00000008353)
Hyrax	MODERN SPECIES	4222																ENSPCAG00000016734 ##22	SLC25A42 (ENSPCAG00000016700)	ARMC6 (ENSPCAG00000016648)	ENSPCAG00000016577
Platypus	MODERN SPECIES	84	CILP2 (ENSOANG00000046610)	YJEFN3 (ENSOANG00000051046)	ENSOANG00000045026	ENSOANG00000011547	GATAD2A (ENSOANG00000006409)	ENSOANG00000012450	SUGP1 (ENSOANG00000030496)	TM6SF2 (ENSOANG00000012176)	HAPLN4 (ENSOANG00000029891)	ENSOANG00000032130	NR2C2AP (ENSOANG00000040380)	ENSOANG00000003658	BORCS8 (ENSOANG00000043258)	ENSOANG00000046511	MEF2B (ENSOANG00000010126)	TMEM161A (ENSOANG00000011575) ##22	SLC25A42 (ENSOANG00000001030)	ARMC6 (ENSOANG00000045954)	SUGP2 (ENSOANG00000004574)	ENSOANG00000043871	ENSOANG00000004573	ENSOANG00000044420	COPE (ENSOANG00000004571)	CERS1 (ENSOANG00000004570)	ENSOANG00000004569	ENSOANG00000004568	COMP (ENSOANG00000002729)	CRTC1 (ENSOANG00000041674)	KLHL26 (ENSOANG00000005746)	ENSOANG00000045153	CRLF1 (ENSOANG00000036818)
Anura	ANCESTRAL SPECIES	119	ENSGT00390000006166	ENSGT00970000194286	ENSGT00390000008152.B.a	ENSGT00390000007227.b	ENSGT00390000004097.a	ENSGT00390000012198	ENSGT00410000025695.a	ENSGT00390000012913.a	ENSGT00940000160926	ENSGT00940000158649	ENSGT00390000017748	ENSGT00940000160753	ENSGT00390000014856	ENSGT00940000165199	ENSGT00940000160699	ENSGT00390000000672.a.a ##22	ENSGT00940000158163	ENSGT00390000002913	ENSGT00410000025695.b	ENSGT00940000158081	ENSGT00730000111231	ENSGT00390000003478	ENSGT01030000234515.b	ENSGT00940000164416.b
Leishan spiny toad	MODERN SPECIES		TPM4 (ENSLLEG00000020308)	ENSLLEG00000020874	GATAD2A (ENSLLEG00000020909)	MAU2 (ENSLLEG00000021086)	SUGP1 (ENSLLEG00000021601)	TM6SF2 (ENSLLEG00000021856)	HAPLN4 (ENSLLEG00000022101)	NCAN (ENSLLEG00000022173)	ENSLLEG00000022581	ENSLLEG00000022604	NR2C2AP (ENSLLEG00000022668)	RFXANK (ENSLLEG00000022726)	BORCS8 (ENSLLEG00000022858)	ENSLLEG00000022900	MEF2B (ENSLLEG00000022939)	TMEM161A (ENSLLEG00000023032) ##22	SLC25A42 (ENSLLEG00000023359)	ENSLLEG00000023562	ARMC6 (ENSLLEG00000023586)	SUGP2 (ENSLLEG00000023662)	ENSLLEG00000023826	ENSLLEG00000023894	ENSLLEG00000023920	HOMER3 (ENSLLEG00000024083)	ENSLLEG00000024299	DDX49 (ENSLLEG00000024349)	COPE (ENSLLEG00000024473)	CERS1 (ENSLLEG00000024933)	ENSLLEG00000024991	XPA (ENSLLEG00000025010)	ENSLLEG00000025079
Frog	MODERN SPECIES		ENSXETG00000042229	plvap (ENSXETG00000036707)	cilp2 (ENSXETG00000013064)	yjefn3 (ENSXETG00000013061)	exosc3 (ENSXETG00000013060)	gatad2a (ENSXETG00000013053)	mau2 (ENSXETG00000013046)	sugp1 (ENSXETG00000013044)	borcs8 (ENSXETG00000040421)	rfxank (ENSXETG00000013042)	nr2c2ap (ENSXETG00000037690)	ncan (ENSXETG00000014328)	hapln4 (ENSXETG00000014330)	tm6sf2 (ENSXETG00000014331)	tmem221 (ENSXETG00000036930)	tmem161a (ENSXETG00000014335) ##22	slc25a42 (ENSXETG00000014336)	armc6 (ENSXETG00000014338)	sugp2 (ENSXETG00000030450)	micos13 (ENSXETG00000039864)	hsd11b1l (ENSXETG00000014342)	celf5 (ENSXETG00000014344)	s1pr4 (ENSXETG00000044238)	ncln (ENSXETG00000014348)	plpp2 (ENSXETG00000026886)	tle2 (ENSXETG00000014353)	tle5 (ENSXETG00000014365)	gna11 (ENSXETG00000014367)	shb (ENSXETG00000014718)	ENSXETG00000043617	aldh1b1 (ENSXETG00000014720)
Coelacanth	MODERN SPECIES	1195																TMEM161A (ENSLACG00000011298) ##22	SLC25A42 (ENSLACG00000010791)	ARMC6 (ENSLACG00000010594)	SUGP2 (ENSLACG00000010085)	ENSLACG00000009677	HOMER3 (ENSLACG00000008840)	uba52 (ENSLACG00000008132)	rex1bd (ENSLACG00000007836)	CRLF1 (ENSLACG00000007457)	TMEM59L (ENSLACG00000006677)	KLHL26 (ENSLACG00000005947)	CRTC1 (ENSLACG00000004626)	ENSLACG00000002929
Actinopterygii	ANCESTRAL SPECIES	61	ENSGT00390000017576	ENSGT00510000049027.c	ENSGT00940000153524.c	ENSGT00940000178278	ENSGT01030000234551	ENSGT00390000018225.A	ENSGT00390000008152.B.a	ENSGT00390000007227.b	ENSGT00390000000719	ENSGT00940000160464	ENSGT00390000004097.a	ENSGT01060000249150	ENSGT00390000012198	ENSGT00390000002913	ENSGT00940000158163	ENSGT00390000000672.a.a ##22	ENSGT00940000160699	ENSGT00940000165199	ENSGT00390000014856	ENSGT00940000160753	ENSGT00390000017748	ENSGT00940000158649	ENSGT00940000160926	ENSGT00390000012913.a	ENSGT00940000159946	ENSGT00940000161913	ENSGT00390000013841	ENSGT00950000183110.b.a	ENSGT00940000160036	ENSGT00940000159258	ENSGT00390000001201
Neopterygii	ANCESTRAL SPECIES	67	ENSGT00940000153524.c	ENSGT00940000153524.d	ENSGT01030000234551	ENSGT00390000018225.A	ENSGT00390000008152.B.a	ENSGT00390000007227.b	ENSGT00390000000719	ENSGT00940000160464	ENSGT00390000004097.a	ENSGT00390000012198.b	ENSGT01060000249150	ENSGT00390000012198.a.a	ENSGT00390000012198.a.b	ENSGT00390000002913	ENSGT00940000158163	ENSGT00390000000672.a.a ##22	ENSGT00940000160699	ENSGT00940000165199	ENSGT00390000014856	ENSGT00940000160753	ENSGT00390000017748	ENSGT00940000158649	ENSGT00940000160926	ENSGT00390000012913.a	ENSGT00940000159946	ENSGT00940000161913	ENSGT00390000013841	ENSGT00950000183110.b.a	ENSGT00940000160036	ENSGT00940000159258	ENSGT00940000161659
Osteoglossocephalai	ANCESTRAL SPECIES	72	ENSGT00510000049027.c	ENSGT00940000153524.c	ENSGT00940000153524.d	ENSGT01030000234551.i	ENSGT00390000018225.A	ENSGT00390000008152.B.a	ENSGT00390000000719	ENSGT00510000049027.d	ENSGT00940000165622	ENSGT00390000007227.b	ENSGT00940000160464	ENSGT00390000004097.a	ENSGT00390000012198.b	ENSGT00390000002913	ENSGT00940000158163	ENSGT00390000000672.a.a ##22	ENSGT00940000160699	ENSGT00940000165199	ENSGT00390000014856	ENSGT00940000160753	ENSGT00390000017748	ENSGT00940000158649.a.a	ENSGT00940000160926	ENSGT00390000012913.a.b	ENSGT00940000159946	ENSGT00940000160036	ENSGT00950000183110.b.a	ENSGT00390000013841	ENSGT00940000161913	ENSGT00940000170739	ENSGT00940000165680.A
Osteoglossiformes	ANCESTRAL SPECIES	72	ENSGT00940000161721.h	ENSGT00940000156523.b.f	ENSGT00940000159142.t	ENSGT00940000157113.b	ENSGT00940000161332.e	ENSGT00410000025695.a	ENSGT00940000158050	ENSGT00390000009230.b	ENSGT00390000017576	ENSGT00510000049027.d	ENSGT00390000000719	ENSGT00390000004097.a.h	ENSGT00390000012198.a.b	ENSGT00390000002913	ENSGT00940000158163	ENSGT00390000000672.a.a ##22	ENSGT00390000014856	ENSGT00940000158649.a.b	ENSGT00390000012913.a.a	ENSGT00940000159946.j	ENSGT00950000183110.b.a.e	ENSGT00940000170739	ENSGT00940000165680.A
P. kingsleyae	MODERN SPECIES	57	bsg (ENSPKIG00000010826)	ENSPKIG00000010809	ENSPKIG00000010799	SUGP1 (ENSPKIG00000010747)	stk11 (ENSPKIG00000010702)	CBARP (ENSPKIG00000010672)	atp5f1d (ENSPKIG00000010642)	ENSPKIG00000010614	cirbpa (ENSPKIG00000010561)	YJEFN3 (ENSPKIG00000010532)	NDUFA13 (ENSPKIG00000010507)	GATAD2A (ENSPKIG00000010439)	MAU2 (ENSPKIG00000010333)	ARMC6 (ENSPKIG00000010274)	slc25a42 (ENSPKIG00000010200)	tmem161a (ENSPKIG00000010088) ##22	ENSPKIG00000010038	borcs8 (ENSPKIG00000010007)	ENSPKIG00000009939	tm6sf2a (ENSPKIG00000009889)	SBNO2 (ENSPKIG00000009707)	ARHGAP45 (ENSPKIG00000009645)	polr2eb (ENSPKIG00000009607)	gpx4b (ENSPKIG00000009572)	PIP5K1C (ENSPKIG00000009530)	oaz1a (ENSPKIG00000009506)	sf3a2 (ENSPKIG00000009487)	plekhj1 (ENSPKIG00000009464)	tpgs1 (ENSPKIG00000009451)	ELL (ENSPKIG00000009417)	ENSPKIG00000009391
Asian bonytongue	MODERN SPECIES	17	bsg (ENSSFOG00015028160)	rnf126 (ENSSFOG00015010159)	FSTL3 (ENSSFOG00015027716)	SUGP1 (ENSSFOG00015010075)	stk11 (ENSSFOG00015010043)	CBARP (ENSSFOG00015010002)	atp5f1d (ENSSFOG00015009981)	ENSSFOG00015032925	cirbpa (ENSSFOG00015009951)	YJEFN3 (ENSSFOG00015009877)	NDUFA13 (ENSSFOG00015009650)	GATAD2A (ENSSFOG00015009592)	MAU2 (ENSSFOG00015009561)	ARMC6 (ENSSFOG00015033233)	slc25a42 (ENSSFOG00015009477)	tmem161a (ENSSFOG00015009392) ##22	borcs8 (ENSSFOG00015009345)	ENSSFOG00015026145	tm6sf2a (ENSSFOG00015009281)	ARHGAP45 (ENSSFOG00015009214)	ENSSFOG00015009196	ENSSFOG00015032093	PIP5K1C (ENSSFOG00015009080)	rab11bb (ENSSFOG00015006245)	MARCHF2 (ENSSFOG00015009018)	hnrnpm (ENSSFOG00015008815)	CTXN1 (ENSSFOG00015032822)	ENSSFOG00015008767	ARHGEF18 (ENSSFOG00015008667)	INSR (ENSSFOG00015008555)	use1 (ENSSFOG00015025821)
Clupeocephala	ANCESTRAL SPECIES	25	ENSGT00940000161721	ENSGT00390000008060	ENSGT00940000156523.b.c	ENSGT00940000159142	ENSGT00940000157113.c	ENSGT00940000161332	ENSGT00390000009230.a	ENSGT00390000017576	ENSGT00510000049027.c	ENSGT00940000153524.c	ENSGT00940000153524.d	ENSGT01030000234551.i	ENSGT00390000018225.A	ENSGT00390000008152.B.a	ENSGT00940000158163.a	ENSGT00390000000672.a.a ##22	ENSGT00940000160699	ENSGT00940000165199	ENSGT00390000014856	ENSGT00940000160753	ENSGT00390000017748	ENSGT00940000158649.a.a	ENSGT00940000160926	ENSGT00390000012913.a.b	ENSGT00940000159946	ENSGT00940000160036	ENSGT00950000183110.b.a.c	ENSGT00390000013841	ENSGT00940000161913	ENSGT00940000170739	ENSGT00940000165680.A
Euteleosteomorpha	ANCESTRAL SPECIES	39	ENSGT00940000161332	ENSGT00390000009230.a	ENSGT00390000017576	ENSGT00510000049027.c	ENSGT00940000153524.c	ENSGT00940000165622	ENSGT00940000153524.d	ENSGT01030000234551.i	ENSGT00390000018225.A	ENSGT00390000008152.B.a	ENSGT00390000007227.b	ENSGT00940000160464	ENSGT00390000004097.a.e	ENSGT00390000012198.b.b	ENSGT00940000158163.a	ENSGT00390000000672.a.a ##22	ENSGT00940000160699	ENSGT00940000165199	ENSGT00390000014856	ENSGT00940000160753	ENSGT00390000017748	ENSGT00940000158649.a.a	ENSGT00940000160926	ENSGT00390000012913.a.b	ENSGT00940000159946	ENSGT00940000160036	ENSGT00950000183110.b.a.c	ENSGT00390000013841	ENSGT00940000161913.b	ENSGT00980000198641	ENSGT00940000159258.d
Acanthomorphata	ANCESTRAL SPECIES	11	ENSGT00940000157113.c	ENSGT00940000161332	ENSGT00390000009230.a	ENSGT00390000017576	ENSGT00510000049027.c	ENSGT00940000153524.c	ENSGT00940000153524.d	ENSGT01030000234551.i	ENSGT00390000018225.A	ENSGT00390000008152.B.a	ENSGT00390000007227.b	ENSGT00940000160464	ENSGT00390000004097.a.e	ENSGT00390000012198.b.b	ENSGT00940000158163.a	ENSGT00390000000672.a.a ##22	ENSGT00940000160699	ENSGT00940000165199	ENSGT00390000014856	ENSGT00940000160753	ENSGT00390000017748	ENSGT00940000158649.a.a	ENSGT00940000160926	ENSGT00390000012913.a.b	ENSGT00940000159946	ENSGT00940000160036	ENSGT00950000183110.b.a.c	ENSGT00390000013841	ENSGT00940000161913.b	ENSGT00980000198641	ENSGT00940000159258.d
Euacanthomorphacea	ANCESTRAL SPECIES	9	ENSGT00390000008060	ENSGT00940000156523.b.c	ENSGT00940000159142	ENSGT00940000157113.c	ENSGT00940000161332	ENSGT00390000009230.a	ENSGT00390000017576	ENSGT00510000049027.c	ENSGT00940000178278	ENSGT00390000018225.A	ENSGT00390000008152.B.a	ENSGT00390000007227.b	ENSGT00390000004097.a.e	ENSGT00390000012198.b.b	ENSGT00940000158163.a	ENSGT00390000000672.a.a ##22	ENSGT00940000160699	ENSGT00940000165199	ENSGT00390000014856	ENSGT00940000160753	ENSGT00390000017748	ENSGT00940000158649.a.a	ENSGT00940000160926	ENSGT00390000012913.a.b	ENSGT00940000159946	ENSGT00940000160036	ENSGT00950000183110.b.a.c	ENSGT00390000013841	ENSGT00940000161913.b	ENSGT00940000165680.A	ENSGT00940000170739
Pinecone sodierfish	MODERN SPECIES	18	RNF126 (ENSMMDG00005003190)	fstl3 (ENSMMDG00005003180)	STK11 (ENSMMDG00005003173)	CBARP (ENSMMDG00005003165)	atp5f1d (ENSMMDG00005003161)	midn (ENSMMDG00005003153)	ENSMMDG00005003140	CIRBP (ENSMMDG00005003130)	ENSMMDG00005003038	si:ch211-212d10.2 (ENSMMDG00005003032)	CILP2 (ENSMMDG00005002863)	yjefn3 (ENSMMDG00005002817)	gatad2ab (ENSMMDG00005002792)	MAU2 (ENSMMDG00005002754)	slc25a42 (ENSMMDG00005002737)	tmem161a (ENSMMDG00005015217) ##22	MEF2B (ENSMMDG00005015213)	ENSMMDG00005015210	borcs8 (ENSMMDG00005015208)	rfxank (ENSMMDG00005015205)	nr2c2ap (ENSMMDG00005015202)	ENSMMDG00005015200	NCAN (ENSMMDG00005015187)	hapln4 (ENSMMDG00005015178)	tm6sf2b (ENSMMDG00005015173)	SBNO2 (ENSMMDG00005015169)	tjp3 (ENSMMDG00005014918)	ARHGAP45 (ENSMMDG00005011391)	POLR2E (ENSMMDG00005011297)	ENSMMDG00005011293	ENSMMDG00005011292
Percomorphaceae	ANCESTRAL SPECIES	12	ENSGT00940000161721	ENSGT00390000008060	ENSGT00940000156523.b.c	ENSGT00940000159142	ENSGT00940000157113.c	ENSGT00940000161332	ENSGT00390000009230.a	ENSGT00390000017576	ENSGT00510000049027.c	ENSGT00390000018225.A	ENSGT00390000008152.B.a	ENSGT00390000007227.b	ENSGT00390000004097.a.e	ENSGT00390000012198.b.b	ENSGT00940000158163.a	ENSGT00390000000672.a.a ##22	ENSGT00940000160699	ENSGT00940000165199	ENSGT00390000014856	ENSGT00940000160753	ENSGT00390000017748	ENSGT00940000158649.a.a	ENSGT00940000160926	ENSGT00390000012913.a.b	ENSGT00940000159946	ENSGT00940000160036	ENSGT00950000183110.b.a.c	ENSGT00390000013841	ENSGT00940000161913.b	ENSGT00940000165680.A	ENSGT00940000170739
Tiger tail seahorse	MODERN SPECIES	469	fgf22 (ENSHCOG00000001540)	POLRMT (ENSHCOG00000001565)	HCN2 (ENSHCOG00000001580)	bsg (ENSHCOG00000001591)	RNF126 (ENSHCOG00000001605)	fstl3 (ENSHCOG00000001614)	CBARP (ENSHCOG00000001618)	atp5f1d (ENSHCOG00000001621)	midn (ENSHCOG00000001630)	si:ch211-212d10.2 (ENSHCOG00000001635)	CILP2 (ENSHCOG00000001645)	yjefn3 (ENSHCOG00000001651)	gatad2ab (ENSHCOG00000001653)	MAU2 (ENSHCOG00000001663)	slc25a42 (ENSHCOG00000001672)	tmem161a (ENSHCOG00000001679) ##22	malt2 (ENSHCOG00000001692)	ENSHCOG00000001697	safb (ENSHCOG00000001705)	lpl (ENSHCOG00000001712)	lpl (ENSHCOG00000002080)	ENSHCOG00000002188	ENSHCOG00000002200	tpm4a (ENSHCOG00000002238)	ENSHCOG00000002252	RAB8A (ENSHCOG00000002268)	ENSHCOG00000002278	tax1bp3 (ENSHCOG00000002283)	slc1a6 (ENSHCOG00000002308)	ENSHCOG00000002330	ENSHCOG00000002337
Percomorphaceae_B	ANCESTRAL SPECIES	9	ENSGT00390000008060	ENSGT00940000156523.b.c	ENSGT00940000159142	ENSGT00940000157113.c	ENSGT00940000161332	ENSGT00390000009230.a	ENSGT00390000017576	ENSGT00510000049027.c	ENSGT01030000234551.i.e.b	ENSGT00390000018225.A	ENSGT00390000008152.B.a	ENSGT00390000007227.b	ENSGT00390000004097.a.e	ENSGT00390000012198.b.b	ENSGT00940000158163.a	ENSGT00390000000672.a.a ##22	ENSGT00940000160699	ENSGT00940000165199	ENSGT00390000014856	ENSGT00940000160753	ENSGT00390000017748	ENSGT00940000158649.a.a	ENSGT00940000160926	ENSGT00390000012913.a.b	ENSGT00940000159946	ENSGT00940000160036	ENSGT00950000183110.b.a.c	ENSGT00390000013841	ENSGT00940000161913.b	ENSGT00940000165680.A	ENSGT00940000170739
Percomorphaceae_C	ANCESTRAL SPECIES	8	ENSGT00940000159142	ENSGT00940000157113.c	ENSGT00940000161332	ENSGT00390000009230.a	ENSGT00390000017576	ENSGT00510000049027.c	ENSGT01030000234551.i.e.b	ENSGT00940000178278	ENSGT01030000234551.i.e.a.b	ENSGT00390000018225.A	ENSGT00390000008152.B.a	ENSGT00390000007227.b	ENSGT00390000004097.a.e	ENSGT00390000012198.b.b	ENSGT00940000158163.a	ENSGT00390000000672.a.a ##22	ENSGT00940000160699	ENSGT00940000165199	ENSGT00390000014856	ENSGT00940000160753	ENSGT00390000017748	ENSGT00940000158649.a.a	ENSGT00940000160926	ENSGT00390000012913.a.b	ENSGT00940000159946	ENSGT00940000160036	ENSGT00950000183110.b.a.c	ENSGT00390000013841	ENSGT00940000161913.b	ENSGT00940000165680.A	ENSGT00940000159258.d
Percomorphaceae_D	ANCESTRAL SPECIES	8	ENSGT00390000008060	ENSGT00940000156523.b.c	ENSGT00940000159142	ENSGT00940000157113.c	ENSGT00940000161332	ENSGT00390000009230.a	ENSGT00390000017576	ENSGT00510000049027.c	ENSGT01030000234551.i.e.b	ENSGT00390000018225.A	ENSGT00390000008152.B.a	ENSGT00390000007227.b	ENSGT00390000004097.a.e	ENSGT00390000012198.b.b	ENSGT00940000158163.a	ENSGT00390000000672.a.a ##22	ENSGT00940000160699	ENSGT00940000165199	ENSGT00390000014856	ENSGT00940000160753	ENSGT00390000017748	ENSGT00940000158649.a.a	ENSGT00940000160926	ENSGT00390000012913.a.b	ENSGT00940000159946	ENSGT00940000160036	ENSGT00950000183110.b.a.c	ENSGT00390000013841	ENSGT00940000161913.b	ENSGT00980000198641	ENSGT00940000159258.d
Carangaria	ANCESTRAL SPECIES	7	ENSGT00390000008060	ENSGT00940000156523.b.c	ENSGT00940000159142	ENSGT00940000157113.c	ENSGT00940000161332	ENSGT00390000009230.a	ENSGT00390000017576	ENSGT00510000049027.c	ENSGT01030000234551.i.e.b	ENSGT00390000018225.A	ENSGT00390000008152.B.a	ENSGT00390000007227.b	ENSGT00390000004097.a.e	ENSGT00390000012198.b.b	ENSGT00940000158163.a	ENSGT00390000000672.a.a ##22	ENSGT00940000160699	ENSGT00940000165199	ENSGT00390000014856	ENSGT00940000160753	ENSGT00390000017748	ENSGT00940000158649.a.a	ENSGT00940000160926	ENSGT00390000012913.a.b	ENSGT00940000159946	ENSGT00940000160036	ENSGT00950000183110.b.a.c	ENSGT00390000013841	ENSGT00940000161913.b	ENSGT00980000198641	ENSGT00940000159258.d
Carangaria_A	ANCESTRAL SPECIES	3	ENSGT00390000008060	ENSGT00940000156523.b.c	ENSGT00940000159142	ENSGT00940000157113.c	ENSGT00940000161332	ENSGT00390000009230.a	ENSGT00390000017576	ENSGT00510000049027.c	ENSGT01030000234551.i.e.b	ENSGT00390000018225.A	ENSGT00390000008152.B.a	ENSGT00390000007227.b	ENSGT00390000004097.a.e	ENSGT00390000012198.b.b	ENSGT00940000158163.a	ENSGT00390000000672.a.a ##22	ENSGT00940000160699	ENSGT00940000165199	ENSGT00390000014856	ENSGT00940000160753	ENSGT00390000017748	ENSGT00940000158649.a.a	ENSGT00940000160926	ENSGT00390000012913.a.b	ENSGT00940000159946	ENSGT00940000160036	ENSGT00950000183110.b.a.c	ENSGT00390000013841	ENSGT00940000161913.b	ENSGT00980000198641	ENSGT00940000159258.d
Seriola	ANCESTRAL SPECIES	21	ENSGT00940000159142	ENSGT00940000157113.c	ENSGT00940000161332	ENSGT00390000009230.a	ENSGT00390000017576	ENSGT00510000049027.c	ENSGT01030000234551.i.e.b.n	ENSGT01030000234551.i.e.b.m.a	ENSGT01030000234551.i.e.b.m.b	ENSGT00390000018225.A	ENSGT00390000008152.B.a	ENSGT00390000007227.b	ENSGT00390000004097.a.e	ENSGT00390000012198.b.b	ENSGT00940000158163.a	ENSGT00390000000672.a.a ##22	ENSGT00940000160699	ENSGT00940000165199	ENSGT00390000014856	ENSGT00940000160753	ENSGT00390000017748	ENSGT00940000158649.a.a	ENSGT00940000160926	ENSGT00390000012913.a.b	ENSGT00940000159946	ENSGT00940000160036	ENSGT00950000183110.b.a.c	ENSGT00390000013841	ENSGT00980000198641	ENSGT00940000159258.d	ENSGT00940000161659
Yellowtail amberjack	MODERN SPECIES	2663												yjefn3 (ENSSLDG00000024158)	gatad2ab (ENSSLDG00000024150)	MAU2 (ENSSLDG00000024103)	slc25a42 (ENSSLDG00000024022)	tmem161a (ENSSLDG00000023993) ##22	mef2b (ENSSLDG00000023980)	ENSSLDG00000023973	borcs8 (ENSSLDG00000023949)	rfxank (ENSSLDG00000023929)	nr2c2ap (ENSSLDG00000023936)	ENSSLDG00000023902
Greater amberjack	MODERN SPECIES	110									ENSSDUG00000004115	si:ch211-212d10.2 (ENSSDUG00000004105)	CILP2 (ENSSDUG00000004095)	yjefn3 (ENSSDUG00000004073)	gatad2ab (ENSSDUG00000004059)	MAU2 (ENSSDUG00000003977)	slc25a42 (ENSSDUG00000003942)	tmem161a (ENSSDUG00000003899) ##22	mef2b (ENSSDUG00000003872)	ENSSDUG00000003853	borcs8 (ENSSDUG00000003834)	rfxank (ENSSDUG00000003808)	nr2c2ap (ENSSDUG00000003792)	NCAN (ENSSDUG00000003738)	hapln4 (ENSSDUG00000003705)	tm6sf2b (ENSSDUG00000003677)	SBNO2 (ENSSDUG00000003527)	tjp3 (ENSSDUG00000003464)	ARHGAP45 (ENSSDUG00000003398)	POLR2E (ENSSDUG00000003352)	gpx4a (ENSSDUG00000003134)	PIP5K1C (ENSSDUG00000003016)	rab11ba (ENSSDUG00000002965)
Barramundi perch	MODERN SPECIES	117								ENSLCAG00010010537	ENSLCAG00010010532	si:ch211-212d10.2 (ENSLCAG00010010529)	CILP2 (ENSLCAG00010010528)	yjefn3 (ENSLCAG00010010518)	gatad2ab (ENSLCAG00010010509)	MAU2 (ENSLCAG00010010415)	slc25a42 (ENSLCAG00010010400)	tmem161a (ENSLCAG00010010389) ##22	mef2b (ENSLCAG00010010385)	ENSLCAG00010010378	borcs8 (ENSLCAG00010010369)	rfxank (ENSLCAG00010010363)	nr2c2ap (ENSLCAG00010010359)	NCAN (ENSLCAG00010010308)	hapln4 (ENSLCAG00010010292)	tm6sf2b (ENSLCAG00010010289)	SBNO2 (ENSLCAG00010010136)	tjp3 (ENSLCAG00010010039)	ARHGAP45 (ENSLCAG00010009991)	POLR2E (ENSLCAG00010009937)	GPX4 (ENSLCAG00010009902)	PIP5K1C (ENSLCAG00010009759)	ENSLCAG00010009646
Pleuronectoidei	ANCESTRAL SPECIES	29	ENSGT00390000008060	ENSGT00940000156523.b.c	ENSGT00940000159142	ENSGT00940000157113.c	ENSGT00940000161332	ENSGT00390000009230.a	ENSGT00390000017576	ENSGT00510000049027.c	ENSGT01030000234551.i.e.b	ENSGT00390000018225.A	ENSGT00390000008152.B.a	ENSGT00390000007227.b	ENSGT00390000004097.a.e	ENSGT00390000012198.b.b	ENSGT00940000158163.a	ENSGT00390000000672.a.a ##22	ENSGT00940000160699	ENSGT00940000165199	ENSGT00390000014856	ENSGT00940000160753	ENSGT00390000017748	ENSGT00940000158649.a.a	ENSGT00940000160926	ENSGT00390000012913.a.b	ENSGT00940000159946	ENSGT00940000160036	ENSGT00950000183110.b.a.c	ENSGT00390000013841	ENSGT00940000165680.A	ENSGT00980000198641	ENSGT00940000159258.d
Tongue sole	MODERN SPECIES	11	org (ENSCSEG00000005703)	lingo3a (ENSCSEG00000005708)	ENSCSEG00000005713	nfil3-4 (ENSCSEG00000005727)	ENSCSEG00000005733	pias4a (ENSCSEG00000005736)	map2k2a (ENSCSEG00000005743)	ENSCSEG00000005752	tcf3b (ENSCSEG00000005762)	ENSCSEG00000005775	ENSCSEG00000005781	yjefn3 (ENSCSEG00000005787)	gatad2ab (ENSCSEG00000005801)	MAU2 (ENSCSEG00000005813)	slc25a42 (ENSCSEG00000005845)	tmem161a (ENSCSEG00000005851) ##22	ENSCSEG00000005870	borcs8 (ENSCSEG00000006744)	ENSCSEG00000006752	rfxank (ENSCSEG00000006758)	nr2c2ap (ENSCSEG00000006765)	NCAN (ENSCSEG00000006782)	hapln4 (ENSCSEG00000006835)	SBNO2 (ENSCSEG00000006856)	tjp3 (ENSCSEG00000006942)	ARHGAP45 (ENSCSEG00000007060)	POLR2E (ENSCSEG00000007107)	rab11ba (ENSCSEG00000007121)	marchf2 (ENSCSEG00000007136)	gpx4a (ENSCSEG00000007167)	PIP5K1C (ENSCSEG00000007222)
Turbot	MODERN SPECIES	3	fgf22 (ENSSMAG00000011840)	POLRMT (ENSSMAG00000011851)	HCN2 (ENSSMAG00000011876)	bsg (ENSSMAG00000011924)	ENSSMAG00000027609	fstl3 (ENSSMAG00000012028)	CBARP (ENSSMAG00000035611)	atp5f1d (ENSSMAG00000012066)	midn (ENSSMAG00000012079)	si:ch211-212d10.2 (ENSSMAG00000012115)	CILP2 (ENSSMAG00000012136)	yjefn3 (ENSSMAG00000036477)	gatad2ab (ENSSMAG00000012151)	MAU2 (ENSSMAG00000012219)	ENSSMAG00000012306	tmem161a (ENSSMAG00000012340) ##22	ENSSMAG00000012394	borcs8 (ENSSMAG00000012397)	rfxank (ENSSMAG00000012403)	nr2c2ap (ENSSMAG00000012414)	NCAN (ENSSMAG00000012434)	hapln4 (ENSSMAG00000012455)	tm6sf2b (ENSSMAG00000012464)	ENSSMAG00000012489	tjp3 (ENSSMAG00000012656)	ENSSMAG00000012720	ENSSMAG00000012782	ENSSMAG00000012809	ENSSMAG00000012826	ENSSMAG00000018613	ENSSMAG00000018632
Anabantaria	ANCESTRAL SPECIES	7	ENSGT00390000008060	ENSGT00940000156523.b.c	ENSGT00940000159142	ENSGT00940000157113.c	ENSGT00940000161332	ENSGT00390000009230.a	ENSGT00390000017576	ENSGT00510000049027.c	ENSGT01030000234551.i.e.b	ENSGT00390000018225.A	ENSGT00390000008152.B.a	ENSGT00390000007227.b	ENSGT00390000004097.a.e	ENSGT00390000012198.b.b	ENSGT00940000158163.a	ENSGT00390000000672.a.a ##22	ENSGT00940000160699	ENSGT00940000165199	ENSGT00390000014856	ENSGT00940000160753	ENSGT00390000017748	ENSGT00940000158649.a.a	ENSGT00940000160926	ENSGT00390000012913.a.b	ENSGT00940000159946	ENSGT00940000160036	ENSGT00950000183110.b.a.c	ENSGT00390000013841	ENSGT00940000165680.A	ENSGT00940000170739	ENSGT00940000159258.d
Anabantoidei	ANCESTRAL SPECIES	6	ENSGT00390000008060	ENSGT00940000156523.b.c	ENSGT00940000159142	ENSGT00940000157113.c	ENSGT00940000161332	ENSGT00390000009230.a	ENSGT00390000017576	ENSGT00510000049027.c	ENSGT01030000234551.i.e.b	ENSGT00390000018225.A	ENSGT00390000008152.B.a	ENSGT00390000007227.b	ENSGT00390000004097.a.e	ENSGT00390000012198.b.b	ENSGT00940000158163.a	ENSGT00390000000672.a.a ##22	ENSGT00940000160699	ENSGT00940000165199	ENSGT00390000014856	ENSGT00940000160753	ENSGT00390000017748	ENSGT00940000158649.a.a	ENSGT00940000160926	ENSGT00390000012913.a.b	ENSGT00940000159946	ENSGT00940000160036	ENSGT00950000183110.b.a.c	ENSGT00390000013841	ENSGT00940000165680.A	ENSGT00940000159258.d	ENSGT00940000161659
Climbing perch	MODERN SPECIES	17	RNF126 (ENSATEG00000024009)	fstl3 (ENSATEG00000024005)	CBARP (ENSATEG00000027455)	atp5f1d (ENSATEG00000023984)	midn (ENSATEG00000023978)	ENSATEG00000023976	ENSATEG00000025509	ENSATEG00000023972	ENSATEG00000023970	si:ch211-212d10.2 (ENSATEG00000027629)	CILP2 (ENSATEG00000023964)	yjefn3 (ENSATEG00000023961)	gatad2ab (ENSATEG00000023952)	MAU2 (ENSATEG00000023946)	ENSATEG00000023936	tmem161a (ENSATEG00000023927) ##22	mef2b (ENSATEG00000023924)	ENSATEG00000023923	borcs8 (ENSATEG00000023918)	rfxank (ENSATEG00000023913)	nr2c2ap (ENSATEG00000023912)	NCAN (ENSATEG00000027153)	hapln4 (ENSATEG00000023886)	tm6sf2b (ENSATEG00000023880)	ENSATEG00000023838	tjp3 (ENSATEG00000023807)	ENSATEG00000023771	ENSATEG00000023760	ENSATEG00000023754	ENSATEG00000026865	ENSATEG00000023737
Siamese fighting fish	MODERN SPECIES	15	HCN2 (ENSBSLG00000001964)	bsg (ENSBSLG00000001972)	RNF126 (ENSBSLG00000001973)	fstl3 (ENSBSLG00000001975)	CBARP (ENSBSLG00000001977)	atp5f1d (ENSBSLG00000001979)	midn (ENSBSLG00000001981)	ENSBSLG00000001988	ENSBSLG00000001990	si:ch211-212d10.2 (ENSBSLG00000001992)	CILP2 (ENSBSLG00000001993)	yjefn3 (ENSBSLG00000001997)	gatad2ab (ENSBSLG00000001998)	MAU2 (ENSBSLG00000002002)	slc25a42 (ENSBSLG00000002019)	tmem161a (ENSBSLG00000002024) ##22	mef2b (ENSBSLG00000002034)	ENSBSLG00000002037	borcs8 (ENSBSLG00000002040)	rfxank (ENSBSLG00000002041)	nr2c2ap (ENSBSLG00000002042)	NCAN (ENSBSLG00000002045)	hapln4 (ENSBSLG00000002051)	tm6sf2b (ENSBSLG00000002053)	SBNO2 (ENSBSLG00000002058)	tjp3 (ENSBSLG00000002071)	ARHGAP45 (ENSBSLG00000002076)	POLR2E (ENSBSLG00000002078)	ENSBSLG00000002081	ENSBSLG00000002082	ENSBSLG00000002090
Zig-zag eel	MODERN SPECIES	18	POLRMT (ENSMAMG00000019284)	HCN2 (ENSMAMG00000019264)	bsg (ENSMAMG00000019255)	ENSMAMG00000019228	fstl3 (ENSMAMG00000019214)	CBARP (ENSMAMG00000019189)	atp5f1d (ENSMAMG00000019175)	midn (ENSMAMG00000019153)	ENSMAMG00000019144	si:ch211-212d10.2 (ENSMAMG00000019120)	CILP2 (ENSMAMG00000019109)	yjefn3 (ENSMAMG00000019081)	gatad2ab (ENSMAMG00000019050)	MAU2 (ENSMAMG00000018981)	ENSMAMG00000018962	tmem161a (ENSMAMG00000018949) ##22	mef2b (ENSMAMG00000018935)	ENSMAMG00000018924	borcs8 (ENSMAMG00000025610)	rfxank (ENSMAMG00000024265)	nr2c2ap (ENSMAMG00000018892)	NCAN (ENSMAMG00000018829)	hapln4 (ENSMAMG00000018807)	tm6sf2b (ENSMAMG00000018786)	ENSMAMG00000018758	tjp3 (ENSMAMG00000018725)	ENSMAMG00000018688	ENSMAMG00000018703	ENSMAMG00000018612	ENSMAMG00000027280	ENSMAMG00000018576
Eupercaria	ANCESTRAL SPECIES	8	ENSGT00940000159142	ENSGT00940000157113.c	ENSGT00940000161332	ENSGT00390000009230.a	ENSGT00390000017576	ENSGT00510000049027.c	ENSGT01030000234551.i.e.b	ENSGT00940000178278	ENSGT01030000234551.i.e.a.b	ENSGT00390000018225.A	ENSGT00390000008152.B.a	ENSGT00390000007227.b	ENSGT00390000004097.a.e	ENSGT00390000012198.b.b	ENSGT00940000158163.a	ENSGT00390000000672.a.a ##22	ENSGT00940000160699	ENSGT00940000165199	ENSGT00390000014856	ENSGT00940000160753	ENSGT00390000017748	ENSGT00940000158649.a.a	ENSGT00940000160926	ENSGT00390000012913.a.b	ENSGT00940000159946	ENSGT00940000160036	ENSGT00950000183110.b.a.c	ENSGT00390000013841	ENSGT00940000161913.b	ENSGT00940000165680.A	ENSGT00940000159258.d
Tetraodontidae	ANCESTRAL SPECIES	5	ENSGT00940000161721	ENSGT00390000008060	ENSGT00940000156523.b.c	ENSGT00940000159142	ENSGT00940000157113.c	ENSGT00940000161332	ENSGT00390000009230.a	ENSGT00390000017576	ENSGT00510000049027.c	ENSGT00390000018225.A	ENSGT00390000008152.B.a	ENSGT00390000007227.b	ENSGT00390000004097.a.e	ENSGT00390000012198.b.b	ENSGT00940000158163.a	ENSGT00390000000672.a.a ##22	ENSGT00940000160699	ENSGT00940000165199	ENSGT00390000014856	ENSGT00940000160753	ENSGT00390000017748	ENSGT00940000158649.a.a	ENSGT00390000012913.a.b	ENSGT00940000159946	ENSGT00940000160036	ENSGT00950000183110.b.a.c	ENSGT00390000013841	ENSGT00940000161913.b	ENSGT00940000165680.A	ENSGT00940000159258.d	ENSGT00940000163126.a.b.h
Fugu	MODERN SPECIES	12	POLRMT (ENSTRUG00000018040)	HCN2 (ENSTRUG00000018063)	bsg (ENSTRUG00000018068)	RNF126 (ENSTRUG00000021807)	fstl3 (ENSTRUG00000018075)	CBARP (ENSTRUG00000027513)	atp5f1d (ENSTRUG00000018094)	midn (ENSTRUG00000018100)	si:ch211-212d10.2 (ENSTRUG00000018114)	CILP2 (ENSTRUG00000018116)	yjefn3 (ENSTRUG00000018119)	gatad2ab (ENSTRUG00000018122)	ENSTRUG00000029691	MAU2 (ENSTRUG00000018128)	slc25a42 (ENSTRUG00000018135)	tmem161a (ENSTRUG00000018141) ##22	mef2b (ENSTRUG00000018156)	ENSTRUG00000020493	borcs8 (ENSTRUG00000020808)	rfxank (ENSTRUG00000018160)	nr2c2ap (ENSTRUG00000024033)	ENSTRUG00000021338	NCAN (ENSTRUG00000018168)	tm6sf2b (ENSTRUG00000018186)	SBNO2 (ENSTRUG00000018193)	tjp3 (ENSTRUG00000018210)	ARHGAP45 (ENSTRUG00000018228)	POLR2E (ENSTRUG00000018238)	gpx4b (ENSTRUG00000018245)	PIP5K1C (ENSTRUG00000018248)	ENSTRUG00000022029
Tetraodon	MODERN SPECIES		ENSTNIG00000010640	fgf22 (ENSTNIG00000010641)	POLRMT (ENSTNIG00000010642)	HCN2 (ENSTNIG00000010643)	bsg (ENSTNIG00000010644)	RNF126 (ENSTNIG00000010645)	fstl3 (ENSTNIG00000010646)	CBARP (ENSTNIG00000010647)	atp5f1d (ENSTNIG00000004442)	midn (ENSTNIG00000003956)	CILP2 (ENSTNIG00000013202)	yjefn3 (ENSTNIG00000013201)	gatad2ab (ENSTNIG00000013200)	MAU2 (ENSTNIG00000013199)	slc25a42 (ENSTNIG00000013198)	tmem161a (ENSTNIG00000013197) ##22	mef2b (ENSTNIG00000013196)	ENSTNIG00000001114	borcs8 (ENSTNIG00000013195)	rfxank (ENSTNIG00000013194)	nr2c2ap (ENSTNIG00000013193)	NCAN (ENSTNIG00000013192)	tm6sf2b (ENSTNIG00000013191)	SBNO2 (ENSTNIG00000000856)	ENSTNIG00000013190	tjp3 (ENSTNIG00000013189)	ARHGAP45 (ENSTNIG00000013188)	POLR2E (ENSTNIG00000013187)	ENSTNIG00000013186	PIP5K1C (ENSTNIG00000013185)	ENSTNIG00000013184
Eupecaria_A	ANCESTRAL SPECIES	11	ENSGT00940000159142	ENSGT00940000157113.c	ENSGT00940000161332	ENSGT00390000009230.a	ENSGT00390000017576	ENSGT00510000049027.c	ENSGT01030000234551.i.e.b.p	ENSGT00940000178278	ENSGT01030000234551.i.e.b.o.b	ENSGT00390000018225.A	ENSGT00390000008152.B.a	ENSGT00390000007227.b	ENSGT00390000004097.a.e	ENSGT00390000012198.b.b	ENSGT00940000158163.a	ENSGT00390000000672.a.a ##22	ENSGT00940000160699	ENSGT00940000165199	ENSGT00390000014856	ENSGT00940000160753	ENSGT00390000017748	ENSGT00940000158649.a.a	ENSGT00940000160926	ENSGT00390000012913.a.b	ENSGT00940000159946	ENSGT00940000160036	ENSGT00950000183110.b.a.c	ENSGT00390000013841	ENSGT00940000161913.b	ENSGT00940000165680.A	ENSGT00940000159258.d
Ballan wrasse	MODERN SPECIES	45	HCN2 (ENSLBEG00000016351)	bsg (ENSLBEG00000016321)	RNF126 (ENSLBEG00000016310)	fstl3 (ENSLBEG00000016293)	CBARP (ENSLBEG00000016278)	atp5f1d (ENSLBEG00000016254)	midn (ENSLBEG00000016212)	ENSLBEG00000016179	ENSLBEG00000016164	si:ch211-212d10.2 (ENSLBEG00000016132)	CILP2 (ENSLBEG00000016088)	yjefn3 (ENSLBEG00000016062)	gatad2ab (ENSLBEG00000016024)	MAU2 (ENSLBEG00000015971)	slc25a42 (ENSLBEG00000015887)	tmem161a (ENSLBEG00000015816) ##22	mef2b (ENSLBEG00000015785)	ENSLBEG00000015774	borcs8 (ENSLBEG00000015745)	rfxank (ENSLBEG00000015705)	nr2c2ap (ENSLBEG00000015675)	ENSLBEG00000015634	TTC39A (ENSLBEG00000015541)	rnf11b (ENSLBEG00000015512)	cdkn2c (ENSLBEG00000015258)	faf1 (ENSLBEG00000015078)	dmrta2 (ENSLBEG00000015054)	ELAVL4 (ENSLBEG00000015023)
Eupecaria_B	ANCESTRAL SPECIES	10	ENSGT00940000159142	ENSGT00940000157113.c	ENSGT00940000161332	ENSGT00390000009230.a	ENSGT00390000017576	ENSGT00510000049027.c	ENSGT01030000234551.i.e.b.p	ENSGT00940000178278	ENSGT01030000234551.i.e.b.o.a	ENSGT00390000018225.A	ENSGT00390000008152.B.a	ENSGT00390000007227.b	ENSGT00390000004097.a.e	ENSGT00390000012198.b.b	ENSGT00940000158163.a	ENSGT00390000000672.a.a ##22	ENSGT00940000160699	ENSGT00940000165199	ENSGT00390000014856	ENSGT00940000160753	ENSGT00390000017748	ENSGT00940000158649.a.a	ENSGT00940000160926	ENSGT00390000012913.a.b	ENSGT00940000159946	ENSGT00940000160036	ENSGT00950000183110.b.a.c	ENSGT00390000013841	ENSGT00940000161913.b	ENSGT00940000165680.A	ENSGT00940000159258.d
Perciformes	ANCESTRAL SPECIES	8	ENSGT00390000008060	ENSGT00940000156523.b.c	ENSGT00940000159142	ENSGT00940000157113.c	ENSGT00940000161332	ENSGT00390000009230.a	ENSGT00390000017576	ENSGT00510000049027.c	ENSGT01030000234551.i.e.a.b	ENSGT00390000018225.A	ENSGT00390000008152.B.a	ENSGT00390000007227.b	ENSGT00390000004097.a.e	ENSGT00390000012198.b.b	ENSGT00940000158163.a	ENSGT00390000000672.a.a ##22	ENSGT00940000160699	ENSGT00940000165199	ENSGT00390000014856	ENSGT00940000160753	ENSGT00390000017748	ENSGT00940000158649.a.a	ENSGT00940000160926	ENSGT00390000012913.a.b	ENSGT00940000159946	ENSGT00940000160036	ENSGT00950000183110.b.a.c	ENSGT00390000013841	ENSGT00940000161913.b	ENSGT00940000165680.A	ENSGT00940000159258.d
Cottioidei	ANCESTRAL SPECIES	5	ENSGT00940000156523.b.c	ENSGT00940000159142	ENSGT00940000157113.c	ENSGT00940000161332	ENSGT00390000009230.a	ENSGT00390000017576	ENSGT00510000049027.c	ENSGT01030000234551.i.e.a.b	ENSGT01030000234551.i.e.b.p	ENSGT00390000018225.A	ENSGT00390000008152.B.a	ENSGT00390000007227.b	ENSGT00390000004097.a.e	ENSGT00390000012198.b.b	ENSGT00940000158163.a	ENSGT00390000000672.a.a ##22	ENSGT00940000160699	ENSGT00940000165199	ENSGT00390000014856	ENSGT00940000160753	ENSGT00390000017748	ENSGT00940000158649.a.a	ENSGT00940000160926	ENSGT00390000012913.a.b	ENSGT00940000159946	ENSGT00940000160036	ENSGT00950000183110.b.a.c	ENSGT00390000013841	ENSGT00940000165680.A	ENSGT00940000159258.d	ENSGT00940000163126.a.b.g.b
Stickleback	MODERN SPECIES	8	HCN2 (ENSGACG00000012964)	bsg (ENSGACG00000012970)	RNF126 (ENSGACG00000012987)	fstl3 (ENSGACG00000012995)	CBARP (ENSGACG00000013001)	atp5f1d (ENSGACG00000013005)	midn (ENSGACG00000013027)	ENSGACG00000013029	ENSGACG00000013031	si:ch211-212d10.2 (ENSGACG00000013034)	CILP2 (ENSGACG00000013036)	yjefn3 (ENSGACG00000013039)	gatad2ab (ENSGACG00000013045)	MAU2 (ENSGACG00000013058)	slc25a42 (ENSGACG00000013066)	tmem161a (ENSGACG00000013071) ##22	mef2b (ENSGACG00000013094)	ENSGACG00000013096	borcs8 (ENSGACG00000013097)	rfxank (ENSGACG00000013104)	nr2c2ap (ENSGACG00000013111)	NCAN (ENSGACG00000013123)	hapln4 (ENSGACG00000013146)	tm6sf2b (ENSGACG00000013151)	SBNO2 (ENSGACG00000013190)	tjp3 (ENSGACG00000013208)	ARHGAP45 (ENSGACG00000013232)	ENSGACG00000013244	POLR2E (ENSGACG00000013247)	ENSGACG00000013266	ENSGACG00000013270
Perciformes_a	ANCESTRAL SPECIES	6	ENSGT00940000156523.b.c	ENSGT00940000159142	ENSGT00940000157113.c	ENSGT00940000161332	ENSGT00390000009230.a	ENSGT00390000017576	ENSGT00510000049027.c	ENSGT01030000234551.i.e.b.p	ENSGT00940000178278	ENSGT00390000018225.A	ENSGT00390000008152.B.a	ENSGT00390000007227.b	ENSGT00390000004097.a.e	ENSGT00390000012198.b.b	ENSGT00940000158163.a	ENSGT00390000000672.a.a ##22	ENSGT00940000160699	ENSGT00940000165199	ENSGT00390000014856	ENSGT00940000160753	ENSGT00390000017748	ENSGT00940000158649.a.a	ENSGT00940000160926	ENSGT00390000012913.a.b	ENSGT00940000159946	ENSGT00940000160036	ENSGT00950000183110.b.a.c	ENSGT00390000013841	ENSGT00940000161913.b	ENSGT00940000159258.d	ENSGT00940000161659
Pike perch	MODERN SPECIES	34	fstl3 (ENSSLUG00000014490)	CBARP (ENSSLUG00000014513)	atp5f1d (ENSSLUG00000014531)	midn (ENSSLUG00000014544)	ENSSLUG00000014553	ENSSLUG00000014579	ENSSLUG00000014597	ENSSLUG00000014632	ENSSLUG00000014643	si:ch211-212d10.2 (ENSSLUG00000014646)	CILP2 (ENSSLUG00000014655)	yjefn3 (ENSSLUG00000014692)	gatad2ab (ENSSLUG00000014711)	MAU2 (ENSSLUG00000014721)	slc25a42 (ENSSLUG00000014736)	tmem161a (ENSSLUG00000014746) ##22	mef2b (ENSSLUG00000014774)	ENSSLUG00000014781	borcs8 (ENSSLUG00000014783)	rfxank (ENSSLUG00000014793)	nr2c2ap (ENSSLUG00000014797)	NCAN (ENSSLUG00000014815)	hapln4 (ENSSLUG00000014874)	tm6sf2b (ENSSLUG00000014884)	SBNO2 (ENSSLUG00000014942)	tjp3 (ENSSLUG00000015106)	ARHGAP45 (ENSSLUG00000015210)	POLR2E (ENSSLUG00000015773)	gpx4b (ENSSLUG00000001474)	PIP5K1C (ENSSLUG00000001546)	ENSSLUG00000001628
Channel bull blenny	MODERN SPECIES	18	RNF126 (ENSCGOG00000002681)	fstl3 (ENSCGOG00000002659)	CBARP (ENSCGOG00000002622)	atp5f1d (ENSCGOG00000011957)	midn (ENSCGOG00000011953)	ENSCGOG00000011938	ENSCGOG00000011935	ENSCGOG00000011931	ENSCGOG00000011928	si:ch211-212d10.2 (ENSCGOG00000011926)	CILP2 (ENSCGOG00000011886)	yjefn3 (ENSCGOG00000011882)	gatad2ab (ENSCGOG00000011862)	MAU2 (ENSCGOG00000011740)	slc25a42 (ENSCGOG00000011734)	tmem161a (ENSCGOG00000011698) ##22	mef2b (ENSCGOG00000011691)	ENSCGOG00000011688	borcs8 (ENSCGOG00000011683)	rfxank (ENSCGOG00000011672)	nr2c2ap (ENSCGOG00000011680)	NCAN (ENSCGOG00000011574)	hapln4 (ENSCGOG00000011564)	tm6sf2b (ENSCGOG00000011563)	SBNO2 (ENSCGOG00000009556)	ENSCGOG00000009472	tjp3 (ENSCGOG00000009463)	ARHGAP45 (ENSCGOG00000008902)	POLR2E (ENSCGOG00000008693)	gpx4b (ENSCGOG00000008676)	PIP5K1C (ENSCGOG00000006876)
Eupecaria_C	ANCESTRAL SPECIES	4	ENSGT00390000008060	ENSGT00940000156523.b.c	ENSGT00940000159142	ENSGT00940000157113.c	ENSGT00940000161332	ENSGT00390000009230.a	ENSGT00390000017576	ENSGT00510000049027.c	ENSGT01030000234551.i.e.b.p	ENSGT00390000018225.A	ENSGT00390000008152.B.a	ENSGT00390000007227.b	ENSGT00390000004097.a.e	ENSGT00390000012198.b.b	ENSGT00940000158163.a	ENSGT00390000000672.a.a ##22	ENSGT00940000160699	ENSGT00940000165199	ENSGT00390000014856	ENSGT00940000160753	ENSGT00390000017748	ENSGT00940000158649.a.a	ENSGT00940000160926	ENSGT00390000012913.a.b	ENSGT00940000159946	ENSGT00940000160036	ENSGT00950000183110.b.a.c	ENSGT00390000013841	ENSGT00940000165680.A	ENSGT00940000159258.d	ENSGT00940000163126.a.b.g.b
Gilthead seabream	MODERN SPECIES	2	POLRMT (ENSSAUG00010005681)	HCN2 (ENSSAUG00010005670)	bsg (ENSSAUG00010005664)	RNF126 (ENSSAUG00010005662)	fstl3 (ENSSAUG00010005655)	CBARP (ENSSAUG00010005653)	ATP5D (ENSSAUG00010005650)	midn (ENSSAUG00010005645)	ENSSAUG00010005636	si:ch211-212d10.2 (ENSSAUG00010005627)	CILP2 (ENSSAUG00010005623)	yjefn3 (ENSSAUG00010005618)	gatad2ab (ENSSAUG00010005615)	MAU2 (ENSSAUG00010005500)	slc25a42 (ENSSAUG00010005490)	tmem161a (ENSSAUG00010005475) ##22	mef2b (ENSSAUG00010005467)	ENSSAUG00010005461	borcs8 (ENSSAUG00010005457)	rfxank (ENSSAUG00010005451)	nr2c2ap (ENSSAUG00010005447)	NCAN (ENSSAUG00010005441)	hapln4 (ENSSAUG00010005438)	tm6sf2b (ENSSAUG00010005435)	SBNO2 (ENSSAUG00010004636)	tjp3 (ENSSAUG00010004595)	ARHGAP45 (ENSSAUG00010002870)	POLR2E (ENSSAUG00010002703)	GPX4a (ENSSAUG00010002689)	PIP5K1C (ENSSAUG00010002590)	ENSSAUG00010002528
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	3	ENSGT00390000008060	ENSGT00940000156523.b.c	ENSGT00940000159142	ENSGT00940000157113.c	ENSGT00940000161332	ENSGT00390000009230.a	ENSGT00390000017576	ENSGT00510000049027.c	ENSGT01030000234551.i.e.b.p	ENSGT00390000018225.A	ENSGT00390000008152.B.a	ENSGT00390000007227.b	ENSGT00390000004097.a.e	ENSGT00390000012198.b.b	ENSGT00940000158163.a	ENSGT00390000000672.a.a ##22	ENSGT00940000160699	ENSGT00940000165199	ENSGT00390000014856	ENSGT00940000160753	ENSGT00390000017748	ENSGT00940000158649.a.a	ENSGT00940000160926	ENSGT00390000012913.a.b	ENSGT00940000159946	ENSGT00940000160036	ENSGT00950000183110.b.a.c	ENSGT00390000013841	ENSGT00940000165680.A	ENSGT00940000159258.d	ENSGT00940000163126.a.b.g.b
European seabass	MODERN SPECIES	17	ENSDLAG00005013607	fstl3 (ENSDLAG00005029236)	fstl3 (ENSDLAG00005030374)	ENSDLAG00005013645	CBARP (ENSDLAG00005013651)	atp5f1d (ENSDLAG00005013665)	midn (ENSDLAG00005026385)	ENSDLAG00005034761	ENSDLAG00005013698	si:ch211-212d10.2 (ENSDLAG00005013715)	CILP2 (ENSDLAG00005013722)	yjefn3 (ENSDLAG00005013739)	gatad2ab (ENSDLAG00005013744)	MAU2 (ENSDLAG00005013801)	ENSDLAG00005014149	tmem161a (ENSDLAG00005014167) ##22	mef2b (ENSDLAG00005014201)	ENSDLAG00005032654	borcs8 (ENSDLAG00005014232)	NCAN (ENSDLAG00005014279)	nr2c2ap (ENSDLAG00005032286)	ENSDLAG00005014345	hapln4 (ENSDLAG00005014355)	tm6sf2b (ENSDLAG00005014398)	ENSDLAG00005014474	tjp3 (ENSDLAG00005015783)	ENSDLAG00005015927	ENSDLAG00005030390	ENSDLAG00005016577	ENSDLAG00005028338	ENSDLAG00005027338
Large yellow croaker	MODERN SPECIES	489	HCN2 (ENSLCRG00005013878)	bsg (ENSLCRG00005013876)	ENSLCRG00005013869	fstl3 (ENSLCRG00005013867)	CBARP (ENSLCRG00005013865)	atp5f1d (ENSLCRG00005013863)	midn (ENSLCRG00005013860)	ENSLCRG00005013858	ENSLCRG00005013853	si:ch211-212d10.2 (ENSLCRG00005013850)	CILP2 (ENSLCRG00005013849)	yjefn3 (ENSLCRG00005013848)	gatad2ab (ENSLCRG00005013847)	MAU2 (ENSLCRG00005013838)	slc25a42 (ENSLCRG00005013834)	tmem161a (ENSLCRG00005013831) ##22	mef2b (ENSLCRG00005013824)	ENSLCRG00005013820	borcs8 (ENSLCRG00005013819)	rfxank (ENSLCRG00005013817)	ENSLCRG00005013816	nr2c2ap (ENSLCRG00005013815)	NCAN (ENSLCRG00005013811)	hapln4 (ENSLCRG00005013806)	tm6sf2b (ENSLCRG00005013801)	SBNO2 (ENSLCRG00005013651)	tjp3 (ENSLCRG00005013525)	ARHGAP45 (ENSLCRG00005010869)	POLR2E (ENSLCRG00005010845)	ENSLCRG00005010838	ENSLCRG00005010836
Ovalentaria	ANCESTRAL SPECIES	9	ENSGT00940000156523.b.c	ENSGT00940000159142	ENSGT00940000157113.c	ENSGT00940000161332	ENSGT00390000009230.a	ENSGT00390000017576	ENSGT00510000049027.c	ENSGT01030000234551.i.e.a.a	ENSGT01030000234551.i.e.b	ENSGT00390000018225.A	ENSGT00390000008152.B.a	ENSGT00390000007227.b	ENSGT00390000004097.a.e	ENSGT00390000012198.b.b	ENSGT00940000158163.a	ENSGT00390000000672.a.a ##22	ENSGT00940000160699	ENSGT00940000165199	ENSGT00390000014856	ENSGT00940000160753	ENSGT00390000017748	ENSGT00940000158649.a.a	ENSGT00940000160926	ENSGT00390000012913.a.b	ENSGT00940000159946	ENSGT00940000160036	ENSGT00950000183110.b.a.c	ENSGT00390000013841	ENSGT00940000161913.b	ENSGT00980000198641	ENSGT00940000159258.d
Atherinomorphae	ANCESTRAL SPECIES	7	ENSGT00940000156523.b.c	ENSGT00940000159142	ENSGT00940000157113.c	ENSGT00940000161332	ENSGT00390000009230.a	ENSGT00390000017576	ENSGT00510000049027.c	ENSGT01030000234551.i.e.a.a	ENSGT01030000234551.i.e.b	ENSGT00390000018225.A	ENSGT00390000008152.B.a	ENSGT00390000007227.b	ENSGT00390000004097.a.e	ENSGT00390000012198.b.b	ENSGT00940000158163.a	ENSGT00390000000672.a.a ##22	ENSGT00940000160699	ENSGT00940000165199	ENSGT00390000014856	ENSGT00940000160753	ENSGT00390000017748	ENSGT00940000158649.a.a	ENSGT00940000160926	ENSGT00390000012913.a.b	ENSGT00940000159946	ENSGT00940000160036	ENSGT00950000183110.b.a.c	ENSGT00390000013841	ENSGT00940000161913.b	ENSGT00940000170739	ENSGT00940000165680.A
Oryzias	ANCESTRAL SPECIES	30	ENSGT00390000013329	ENSGT00390000000289	ENSGT00940000157639	ENSGT00940000155528.t.d.a	ENSGT00940000155981.h	ENSGT00550000074917	ENSGT00940000161734	ENSGT00940000156299	ENSGT00510000049027.c	ENSGT01030000234551.i.e.b	ENSGT00390000008152.B.a	ENSGT00390000007227.b	ENSGT00390000004097.a.e	ENSGT00390000012198.b.b	ENSGT00940000158163.a	ENSGT00390000000672.a.a ##22	ENSGT00940000160699	ENSGT00940000165199	ENSGT00390000014856	ENSGT00940000160753	ENSGT00390000017748	ENSGT00940000158649.a.a	ENSGT00940000160926	ENSGT00390000012913.a.b	ENSGT00940000159946	ENSGT00940000153190.B.b	ENSGT00940000170731	ENSGT00730000112922	ENSGT00940000159656.a.a	ENSGT01080000257336.a.c.b	ENSGT00940000155119
Oryzias_b	ANCESTRAL SPECIES	35	ENSGT00390000013329	ENSGT00940000157639	ENSGT00940000155528.t.d.a	ENSGT00940000155981.h	ENSGT00550000074917	ENSGT00940000161734	ENSGT00940000156299	ENSGT00510000049027.c	ENSGT01030000234551.i.e.b	ENSGT00390000008152.B.a	ENSGT00390000007227.b	ENSGT00390000004097.a.e	ENSGT00390000012198.b.b	ENSGT00940000158163.a	ENSGT01070000254197	ENSGT00390000000672.a.a ##22	ENSGT00940000160699	ENSGT00940000165199	ENSGT00390000014856	ENSGT00940000160753	ENSGT00390000017748	ENSGT00940000158649.a.a	ENSGT00940000160926	ENSGT00390000012913.a.b	ENSGT00940000159946	ENSGT00940000153190.B.b	ENSGT00940000170731	ENSGT00730000112922	ENSGT00940000159656.a.a	ENSGT01080000257336.a.c.b	ENSGT00940000155119
Indian medaka	MODERN SPECIES	34	gsx2 (ENSOMEG00000015693)	pdgfra (ENSOMEG00000015665)	ENSOMEG00000015560	kdr (ENSOMEG00000015503)	srd5a3 (ENSOMEG00000015464)	ect2 (ENSOMEG00000000925)	midn (ENSOMEG00000015128)	ENSOMEG00000015087	ENSOMEG00000015073	CILP2 (ENSOMEG00000015055)	yjefn3 (ENSOMEG00000015046)	gatad2ab (ENSOMEG00000015024)	MAU2 (ENSOMEG00000014989)	slc25a42 (ENSOMEG00000014870)	ENSOMEG00000014817	tmem161a (ENSOMEG00000014790) ##22	mef2b (ENSOMEG00000014712)	ENSOMEG00000000366	borcs8 (ENSOMEG00000014667)	rfxank (ENSOMEG00000014638)	nr2c2ap (ENSOMEG00000014561)	ENSOMEG00000014545	NCAN (ENSOMEG00000014529)	tm6sf2b (ENSOMEG00000014491)	SBNO2 (ENSOMEG00000000359)	ENSOMEG00000014228	im:7152348 (ENSOMEG00000014215)	rab6ba (ENSOMEG00000014206)	SLCO2A1 (ENSOMEG00000014186)	ryk (ENSOMEG00000014151)	ENSOMEG00000014086
Javanese ricefish	MODERN SPECIES	18	ENSOJAG00000004321	ENSOJAG00000004358	ect2 (ENSOJAG00000004709)	ENSOJAG00000006139	rfc4 (ENSOJAG00000006627)	midn (ENSOJAG00000007032)	ENSOJAG00000007064	CILP2 (ENSOJAG00000007086)	yjefn3 (ENSOJAG00000007102)	gatad2ab (ENSOJAG00000007116)	MAU2 (ENSOJAG00000007240)	slc25a42 (ENSOJAG00000007296)	ENSOJAG00000007308	ENSOJAG00000007329	ENSOJAG00000007343	tmem161a (ENSOJAG00000007371) ##22	mef2b (ENSOJAG00000007483)	ENSOJAG00000007522	borcs8 (ENSOJAG00000007532)	rfxank (ENSOJAG00000007553)	nr2c2ap (ENSOJAG00000007579)	NCAN (ENSOJAG00000007597)	hapln4 (ENSOJAG00000007665)	tm6sf2b (ENSOJAG00000007693)	SBNO2 (ENSOJAG00000007836)	ENSOJAG00000008725	rab6ba (ENSOJAG00000008754)	SLCO2A1 (ENSOJAG00000008852)	ryk (ENSOJAG00000008949)	ENSOJAG00000009582	KLHL30 (ENSOJAG00000009607)
Oryzias_a	ANCESTRAL SPECIES	41	ENSGT00390000013329	ENSGT00390000000289	ENSGT00940000157639	ENSGT00940000155528.t.d.a	ENSGT00940000155981.h	ENSGT00550000074917	ENSGT00940000161734	ENSGT00940000156299	ENSGT00510000049027.c	ENSGT01030000234551.i.e.b	ENSGT00390000008152.B.a	ENSGT00390000007227.b	ENSGT00390000004097.a.e	ENSGT00390000012198.b.b	ENSGT00940000158163.a	ENSGT00390000000672.a.a ##22	ENSGT00940000160699	ENSGT00940000165199	ENSGT00390000014856	ENSGT00940000160753	ENSGT00390000017748	ENSGT00940000158649.a.a	ENSGT00940000160926	ENSGT00390000012913.a.b	ENSGT00940000159946	ENSGT00940000170731	ENSGT00730000112922	ENSGT00940000159656.a.a	ENSGT01080000257336.a.c.b	ENSGT00940000155119	ENSGT00940000160730
Japanese Medaka HdrR	MODERN SPECIES	18	stx6 (ENSORLG00000000093)	ENSORLG00000000087	ENSORLG00000000073	rfc4 (ENSORLG00000000053)	ENSORLG00000000049	ect2 (ENSORLG00000000041)	ENSORLG00000025361	midn (ENSORLG00000000685)	ENSORLG00000024404	CILP2 (ENSORLG00000000703)	yjefn3 (ENSORLG00000030037)	gatad2ab (ENSORLG00000000720)	ENSORLG00000028366	MAU2 (ENSORLG00000000760)	ENSORLG00000000770	tmem161a (ENSORLG00000000790) ##22	ENSORLG00000026562	ENSORLG00000029337	borcs8 (ENSORLG00000030454)	ENSORLG00000014284	rfxank (ENSORLG00000000796)	nr2c2ap (ENSORLG00000000801)	ENSORLG00000022458	NCAN (ENSORLG00000000836)	hapln4 (ENSORLG00000000846)	tm6sf2b (ENSORLG00000000887)	SBNO2 (ENSORLG00000000913)	ENSORLG00000024351	ENSORLG00000000923	im:7152348 (ENSORLG00000029139)	ENSORLG00000000937
Chinese medaka	MODERN SPECIES	300								midn (ENSOSIG00000006191)	ENSOSIG00000006194	ENSOSIG00000006195	CILP2 (ENSOSIG00000006198)	yjefn3 (ENSOSIG00000006199)	gatad2ab (ENSOSIG00000006200)	MAU2 (ENSOSIG00000006208)	slc25a42 (ENSOSIG00000006234)	tmem161a (ENSOSIG00000006236) ##22	mef2b (ENSOSIG00000006265)	ENSOSIG00000006268	borcs8 (ENSOSIG00000006271)	rfxank (ENSOSIG00000006272)	nr2c2ap (ENSOSIG00000006274)	ENSOSIG00000006275	hapln4 (ENSOSIG00000006280)
Cyprinodontiformes	ANCESTRAL SPECIES	7	ENSGT00940000156523.b.c	ENSGT00940000159142	ENSGT00940000157113.c	ENSGT00940000161332	ENSGT00390000009230.a	ENSGT00390000017576	ENSGT00510000049027.c	ENSGT01030000234551.i.e.a.a	ENSGT01030000234551.i.e.b	ENSGT00390000018225.A	ENSGT00390000008152.B.a	ENSGT00390000007227.b	ENSGT00390000004097.a.e	ENSGT00390000012198.b.b	ENSGT00940000158163.a	ENSGT00390000000672.a.a ##22	ENSGT00940000160699	ENSGT00940000165199	ENSGT00390000014856	ENSGT00940000160753	ENSGT00390000017748	ENSGT00940000158649.a.a	ENSGT00940000160926	ENSGT00390000012913.a.b	ENSGT00940000159946	ENSGT00940000160036	ENSGT00950000183110.b.a.c	ENSGT00390000013841	ENSGT00940000161913.b	ENSGT00980000198641	ENSGT00940000159258.d
Aplocheiloidei	ANCESTRAL SPECIES	3	ENSGT00390000008060	ENSGT00940000156523.b.c	ENSGT00940000159142	ENSGT00940000157113.c	ENSGT00940000161332	ENSGT00390000009230.a	ENSGT00390000017576	ENSGT00510000049027.c	ENSGT01030000234551.i.e.b	ENSGT00390000018225.A	ENSGT00390000008152.B.a	ENSGT00390000007227.b	ENSGT00390000004097.a.e	ENSGT00390000012198.b.b	ENSGT00940000158163.a	ENSGT00390000000672.a.a ##22	ENSGT00940000160699	ENSGT00940000165199	ENSGT00390000014856	ENSGT00940000160753	ENSGT00390000017748	ENSGT00940000158649.a.a	ENSGT00940000160926	ENSGT00390000012913.a.b	ENSGT00940000159946	ENSGT00940000160036	ENSGT00950000183110.b.a.c	ENSGT00390000013841	ENSGT00940000165680.A	ENSGT00940000159258.d	ENSGT00940000161659
Mangrove rivulus	MODERN SPECIES	8	atp5f1d (ENSKMAG00000004709)	midn (ENSKMAG00000004733)	ENSKMAG00000004759	ENSKMAG00000004795	ENSKMAG00000004805	ENSKMAG00000004832	ENSKMAG00000004867	ENSKMAG00000004887	ENSKMAG00000004915	si:ch211-212d10.2 (ENSKMAG00000004999)	CILP2 (ENSKMAG00000005007)	yjefn3 (ENSKMAG00000005026)	gatad2ab (ENSKMAG00000005052)	MAU2 (ENSKMAG00000005097)	slc25a42 (ENSKMAG00000005187)	tmem161a (ENSKMAG00000005244) ##22	ENSKMAG00000005295	ENSKMAG00000005310	borcs8 (ENSKMAG00000005322)	rfxank (ENSKMAG00000005331)	nr2c2ap (ENSKMAG00000005347)	NCAN (ENSKMAG00000005371)	hapln4 (ENSKMAG00000005397)	tm6sf2b (ENSKMAG00000005449)	SBNO2 (ENSKMAG00000005541)	tjp3 (ENSKMAG00000005798)	ARHGAP45 (ENSKMAG00000005916)	POLR2E (ENSKMAG00000005954)	PIP5K1C (ENSKMAG00000005999)	rab11ba (ENSKMAG00000006082)	marchf2 (ENSKMAG00000006111)
Turquoise killifish	MODERN SPECIES	55														ENSNFUG00015021415	ENSNFUG00015021419	TMEM161A (ENSNFUG00015021422) ##22	ENSNFUG00015021431	TMEM221 (ENSNFUG00015021434)	borcs8 (ENSNFUG00015021438)	rfxank (ENSNFUG00015021440)	nr2c2ap (ENSNFUG00015021448)
Cyprinodontoidei	ANCESTRAL SPECIES	10	ENSGT00940000157113.c	ENSGT00940000161332	ENSGT00390000009230.a	ENSGT00390000017576	ENSGT00510000049027.c	ENSGT01030000234551.i.e.a.a	ENSGT00940000178278	ENSGT01030000234551.i.e.a.b	ENSGT01030000234551.i.e.b	ENSGT00390000018225.A	ENSGT00390000008152.B.a	ENSGT00390000007227.b	ENSGT00390000004097.a.e	ENSGT00390000012198.b.b	ENSGT00940000158163.a	ENSGT00390000000672.a.a ##22	ENSGT00940000160699	ENSGT00940000165199	ENSGT00390000014856	ENSGT00940000160753	ENSGT00390000017748	ENSGT00940000158649.a.a	ENSGT00940000160926	ENSGT00390000012913.a.b	ENSGT00940000159946	ENSGT00940000160036	ENSGT00950000183110.b.a.c	ENSGT00390000013841	ENSGT00940000161913.b	ENSGT00980000198641	ENSGT00940000159258.d
Poeciliinae	ANCESTRAL SPECIES	7	ENSGT00940000159142	ENSGT00940000157113.c	ENSGT00940000161332	ENSGT00390000009230.a	ENSGT00390000017576	ENSGT00510000049027.c	ENSGT01030000234551.i.e.a.a	ENSGT01030000234551.i.e.a.b	ENSGT01030000234551.i.e.b	ENSGT00390000018225.A	ENSGT00390000008152.B.a	ENSGT00390000007227.b	ENSGT00390000004097.a.e	ENSGT00390000012198.b.b	ENSGT00940000158163.a	ENSGT00390000000672.a.a ##22	ENSGT00940000160699	ENSGT00940000165199	ENSGT00390000014856	ENSGT00940000160753	ENSGT00390000017748	ENSGT00940000158649.a.a	ENSGT00940000160926	ENSGT00390000012913.a.b	ENSGT00940000159946	ENSGT00940000160036	ENSGT00950000183110.b.a.c	ENSGT00390000013841	ENSGT00940000161913.b	ENSGT00980000198641	ENSGT00940000159258.d
Poecilia	ANCESTRAL SPECIES	1	ENSGT00940000159142	ENSGT00940000157113.c	ENSGT00940000161332	ENSGT00390000009230.a	ENSGT00390000017576	ENSGT00510000049027.c	ENSGT01030000234551.i.e.a.a	ENSGT01030000234551.i.e.a.b	ENSGT01030000234551.i.e.b	ENSGT00390000018225.A	ENSGT00390000008152.B.a	ENSGT00390000007227.b	ENSGT00390000004097.a.e	ENSGT00390000012198.b.b	ENSGT00940000158163.a	ENSGT00390000000672.a.a ##22	ENSGT00940000160699	ENSGT00940000165199	ENSGT00390000014856	ENSGT00940000160753	ENSGT00390000017748	ENSGT00940000158649.a.a	ENSGT00940000160926	ENSGT00390000012913.a.b.e	ENSGT00390000012913.a.b.f	ENSGT00940000159946	ENSGT00940000160036	ENSGT00950000183110.b.a.c	ENSGT00390000013841	ENSGT00940000161913.b	ENSGT00980000198641
NAME_6	ANCESTRAL SPECIES	97	ENSGT00940000157113.c	ENSGT00940000161332	ENSGT00390000009230.a	ENSGT00390000017576	ENSGT00510000049027.c	ENSGT01030000234551.i.e.a.a	ENSGT01030000234551.i.e.a.b	ENSGT01030000234551.i.e.b	ENSGT00390000018225.A	ENSGT00390000008152.B.a	ENSGT00390000007227.b.x	ENSGT00390000007227.b.w	ENSGT00390000004097.a.e	ENSGT00390000012198.b.b	ENSGT00940000158163.a	ENSGT00390000000672.a.a ##22	ENSGT00940000160699	ENSGT00940000165199	ENSGT00390000014856	ENSGT00940000160753	ENSGT00390000017748	ENSGT00940000158649.a.a	ENSGT00940000160926	ENSGT00390000012913.a.b.e
Amazon molly	MODERN SPECIES	504	atp5f1d (ENSPFOG00000003688)	midn (ENSPFOG00000003571)	ENSPFOG00000003457	ENSPFOG00000003400	ENSPFOG00000003327	si:ch211-212d10.2 (ENSPFOG00000003323)	yjefn3 (ENSPFOG00000023381)	CILP2 (ENSPFOG00000003206)	ENSPFOG00000003133	yjefn3 (ENSPFOG00000003143)	gatad2ab (ENSPFOG00000003089)	MAU2 (ENSPFOG00000002855)	gatad2ab (ENSPFOG00000002553)	MAU2 (ENSPFOG00000002252)	slc25a42 (ENSPFOG00000002163)	tmem161a (ENSPFOG00000002030) ##22	mef2b (ENSPFOG00000001969)	ENSPFOG00000001926	borcs8 (ENSPFOG00000001921)	rfxank (ENSPFOG00000001858)	nr2c2ap (ENSPFOG00000001785)	NCAN (ENSPFOG00000001509)	hapln4 (ENSPFOG00000021832)	tm6sf2b (ENSPFOG00000001189)
Sailfin molly	MODERN SPECIES	312														MAU2 (ENSPLAG00000018205)	slc25a42 (ENSPLAG00000018247)	tmem161a (ENSPLAG00000018280) ##22	mef2b (ENSPLAG00000018315)	ENSPLAG00000018328	borcs8 (ENSPLAG00000018342)	rfxank (ENSPLAG00000018348)	nr2c2ap (ENSPLAG00000018357)	NCAN (ENSPLAG00000018368)	hapln4 (ENSPLAG00000018427)	tm6sf2b (ENSPLAG00000018460)
Guppy	MODERN SPECIES	456	RNF126 (ENSPREG00000007525)	fstl3 (ENSPREG00000007505)	CBARP (ENSPREG00000007484)	atp5f1d (ENSPREG00000007462)	midn (ENSPREG00000007434)	ENSPREG00000007425	ENSPREG00000007406	ENSPREG00000007278	si:ch211-212d10.2 (ENSPREG00000007257)	CILP2 (ENSPREG00000007239)	yjefn3 (ENSPREG00000007211)	gatad2ab (ENSPREG00000007174)	ENSPREG00000007161	MAU2 (ENSPREG00000007092)	slc25a42 (ENSPREG00000007062)	tmem161a (ENSPREG00000007020) ##22	mef2b (ENSPREG00000006985)	ENSPREG00000006967	borcs8 (ENSPREG00000006954)	rfxank (ENSPREG00000006942)	nr2c2ap (ENSPREG00000006927)	NCAN (ENSPREG00000006902)	hapln4 (ENSPREG00000006886)	ENSPREG00000006870	tm6sf2b (ENSPREG00000006815)	SBNO2 (ENSPREG00000006755)	tjp3 (ENSPREG00000006711)	ARHGAP45 (ENSPREG00000006545)	POLR2E (ENSPREG00000006489)	GPX4 (ENSPREG00000006468)	PIP5K1C (ENSPREG00000006402)
Platyfish	MODERN SPECIES	23	bsg (ENSXMAG00000012451)	RNF126 (ENSXMAG00000012441)	fstl3 (ENSXMAG00000012436)	CBARP (ENSXMAG00000029070)	atp5f1d (ENSXMAG00000025998)	midn (ENSXMAG00000012420)	ENSXMAG00000012370	ENSXMAG00000012368	ENSXMAG00000012363	si:ch211-212d10.2 (ENSXMAG00000027766)	CILP2 (ENSXMAG00000012353)	yjefn3 (ENSXMAG00000028715)	gatad2ab (ENSXMAG00000012323)	MAU2 (ENSXMAG00000012294)	slc25a42 (ENSXMAG00000012286)	tmem161a (ENSXMAG00000012265) ##22	mef2b (ENSXMAG00000021241)	ENSXMAG00000012262	borcs8 (ENSXMAG00000012261)	rfxank (ENSXMAG00000025235)	nr2c2ap (ENSXMAG00000012225)	NCAN (ENSXMAG00000012163)	hapln4 (ENSXMAG00000027383)	tm6sf2b (ENSXMAG00000012128)	SBNO2 (ENSXMAG00000012091)	tjp3 (ENSXMAG00000012059)	ARHGAP45 (ENSXMAG00000012031)	POLR2E (ENSXMAG00000026495)	gpx4a (ENSXMAG00000012006)	ENSXMAG00000011962	rab11ba (ENSXMAG00000013416)
NAME_4	ANCESTRAL SPECIES	110	ENSGT00940000157113.c	ENSGT00940000161332	ENSGT00390000009230.a	ENSGT00390000017576	ENSGT00510000049027.c	ENSGT01030000234551.i.e.a.a	ENSGT00940000178278	ENSGT01030000234551.i.e.a.b	ENSGT01030000234551.i.e.b	ENSGT00390000018225.A	ENSGT00390000008152.B.a	ENSGT00390000007227.b	ENSGT00390000004097.a.e	ENSGT00390000012198.b.b	ENSGT00940000158163.a	ENSGT00390000000672.a.a ##22	ENSGT00940000160699	ENSGT00940000165199	ENSGT00390000014856	ENSGT00940000160753	ENSGT00390000017748	ENSGT00940000158649.a.a	ENSGT00940000160926	ENSGT00390000012913.a.b	ENSGT00940000159946	ENSGT00940000160036	ENSGT00950000183110.b.a.c	ENSGT00390000013841	ENSGT00940000161913.b	ENSGT00980000198641	ENSGT00940000159258.d
Mummichog	MODERN SPECIES	2290	bsg (ENSFHEG00000021321)	RNF126 (ENSFHEG00000021361)	ENSFHEG00000021366	fstl3 (ENSFHEG00000021369)	CBARP (ENSFHEG00000021441)	atp5f1d (ENSFHEG00000021465)	midn (ENSFHEG00000021487)	ENSFHEG00000021490	ENSFHEG00000021499	ENSFHEG00000021505	CILP2 (ENSFHEG00000021559)	yjefn3 (ENSFHEG00000021569)	gatad2ab (ENSFHEG00000021662)	MAU2 (ENSFHEG00000021753)	slc25a42 (ENSFHEG00000021781)	tmem161a (ENSFHEG00000021793) ##22	mef2b (ENSFHEG00000021846)	ENSFHEG00000021853	borcs8 (ENSFHEG00000021862)	rfxank (ENSFHEG00000021871)	nr2c2ap (ENSFHEG00000021912)	NCAN (ENSFHEG00000022147)	hapln4 (ENSFHEG00000022171)	tm6sf2b (ENSFHEG00000022218)	SBNO2 (ENSFHEG00000022262)	tjp3 (ENSFHEG00000022318)	ARHGAP45 (ENSFHEG00000022345)	POLR2E (ENSFHEG00000022398)	gpx4b (ENSFHEG00000022574)	PIP5K1C (ENSFHEG00000022625)	rab11ba (ENSFHEG00000022642)
Sheepshead minnow	MODERN SPECIES	1117													gatad2ab (ENSCVAG00000007976)	ENSCVAG00000007959	slc25a42 (ENSCVAG00000007954)	tmem161a (ENSCVAG00000007916) ##22	mef2b (ENSCVAG00000007900)	ENSCVAG00000007872	borcs8 (ENSCVAG00000007865)	rfxank (ENSCVAG00000007859)	nr2c2ap (ENSCVAG00000007850)
Ovalentaria_B	ANCESTRAL SPECIES	8	ENSGT00940000156523.b.c	ENSGT00940000159142	ENSGT00940000157113.c	ENSGT00940000161332	ENSGT00390000009230.a	ENSGT00390000017576	ENSGT00510000049027.c	ENSGT01030000234551.i.e.a.a	ENSGT01030000234551.i.e.b	ENSGT00390000018225.A	ENSGT00390000008152.B.a	ENSGT00390000007227.b	ENSGT00390000004097.a.e	ENSGT00390000012198.b.b	ENSGT00940000158163.a	ENSGT00390000000672.a.a ##22	ENSGT00940000160699	ENSGT00940000165199	ENSGT00390000014856	ENSGT00940000160753	ENSGT00390000017748	ENSGT00940000158649.a.a	ENSGT00940000160926	ENSGT00390000012913.a.b	ENSGT00940000159946	ENSGT00940000160036	ENSGT00950000183110.b.a.c	ENSGT00390000013841	ENSGT00940000165680.A	ENSGT00980000198641	ENSGT00940000159258.d
Pomacentridae	ANCESTRAL SPECIES	14	ENSGT00940000156523.b.c	ENSGT00940000159142	ENSGT00940000157113.c	ENSGT00940000161332	ENSGT00390000009230.a	ENSGT00390000017576	ENSGT00510000049027.c	ENSGT01030000234551.i.e.a.a	ENSGT01030000234551.i.e.b	ENSGT00390000018225.A	ENSGT00390000008152.B.a	ENSGT00390000007227.b	ENSGT00390000004097.a.e	ENSGT00390000012198.b.b	ENSGT00940000158163.a	ENSGT00390000000672.a.a ##22	ENSGT00940000160699	ENSGT00940000165199	ENSGT00390000014856	ENSGT00940000160753	ENSGT00390000017748	ENSGT00940000158649.a.a	ENSGT00940000160926	ENSGT00390000012913.a.b	ENSGT00940000159946	ENSGT00940000160036	ENSGT00950000183110.b.a.c	ENSGT00390000013841	ENSGT00980000198641	ENSGT00940000159258.d	ENSGT00940000161659
Pomacentridae_A	ANCESTRAL SPECIES		ENSGT00940000156523.b.c	ENSGT00940000159142	ENSGT00940000157113.c	ENSGT00940000161332	ENSGT00390000009230.a	ENSGT00390000017576	ENSGT00510000049027.c	ENSGT01030000234551.i.e.a.a	ENSGT01030000234551.i.e.b	ENSGT00390000018225.A	ENSGT00390000008152.B.a	ENSGT00390000007227.b	ENSGT00390000004097.a.e	ENSGT00390000012198.b.b	ENSGT00940000158163.a	ENSGT00390000000672.a.a ##22	ENSGT00940000160699	ENSGT00940000165199	ENSGT00390000014856	ENSGT00940000160753	ENSGT00390000017748	ENSGT00940000158649.a.a	ENSGT00940000160926	ENSGT00390000012913.a.b	ENSGT00940000159946	ENSGT00940000160036	ENSGT00950000183110.b.a.c	ENSGT00390000013841	ENSGT00980000198641	ENSGT00940000159258.d	ENSGT00940000161659
Amphiprion	ANCESTRAL SPECIES	2	ENSGT00940000156523.b.c	ENSGT00940000159142	ENSGT00940000157113.c	ENSGT00940000161332	ENSGT00390000009230.a	ENSGT00390000017576	ENSGT00510000049027.c	ENSGT01030000234551.i.e.a.a	ENSGT01030000234551.i.e.b	ENSGT00390000018225.A	ENSGT00390000008152.B.a	ENSGT00390000007227.b	ENSGT00390000004097.a.e	ENSGT00390000012198.b.b	ENSGT00940000158163.a	ENSGT00390000000672.a.a ##22	ENSGT00940000160699	ENSGT00940000165199	ENSGT00390000014856	ENSGT00940000160753	ENSGT00390000017748	ENSGT00940000158649.a.a	ENSGT00940000160926	ENSGT00390000012913.a.b	ENSGT00940000159946	ENSGT00940000160036	ENSGT00950000183110.b.a.c	ENSGT00390000013841	ENSGT00940000165680.A	ENSGT00980000198641	ENSGT00940000159258.d
Orange clownfish	MODERN SPECIES	11	HCN2 (ENSAPEG00000008018)	bsg (ENSAPEG00000008045)	RNF126 (ENSAPEG00000008067)	fstl3 (ENSAPEG00000008113)	CBARP (ENSAPEG00000008180)	atp5f1d (ENSAPEG00000008237)	midn (ENSAPEG00000008245)	ENSAPEG00000008253	ENSAPEG00000008262	si:ch211-212d10.2 (ENSAPEG00000008286)	CILP2 (ENSAPEG00000008322)	yjefn3 (ENSAPEG00000008388)	gatad2ab (ENSAPEG00000008398)	MAU2 (ENSAPEG00000008410)	slc25a42 (ENSAPEG00000008468)	tmem161a (ENSAPEG00000008483) ##22	mef2b (ENSAPEG00000008527)	ENSAPEG00000008571	borcs8 (ENSAPEG00000008579)	rfxank (ENSAPEG00000008599)	nr2c2ap (ENSAPEG00000008619)	ENSAPEG00000008642	ENSAPEG00000008664	ENSAPEG00000008703	hapln4 (ENSAPEG00000008754)	tm6sf2b (ENSAPEG00000008818)	SBNO2 (ENSAPEG00000008862)	tjp3 (ENSAPEG00000008924)	ARHGAP45 (ENSAPEG00000008981)	POLR2E (ENSAPEG00000009000)	ENSAPEG00000009041
Clown anemonefish	MODERN SPECIES	168										ENSAOCG00000016304	tm2d2 (ENSAOCG00000016329)	ENSAOCG00000016341	gatad2ab (ENSAOCG00000016362)	MAU2 (ENSAOCG00000016436)	slc25a42 (ENSAOCG00000016481)	tmem161a (ENSAOCG00000001141) ##22	mef2b (ENSAOCG00000016557)	ENSAOCG00000016569	borcs8 (ENSAOCG00000001976)	rfxank (ENSAOCG00000016622)	nr2c2ap (ENSAOCG00000016635)	NCAN (ENSAOCG00000016678)
Spiny chromis	MODERN SPECIES	7	HCN2 (ENSAPOG00000000086)	bsg (ENSAPOG00000003917)	RNF126 (ENSAPOG00000003898)	fstl3 (ENSAPOG00000003869)	CBARP (ENSAPOG00000003837)	atp5f1d (ENSAPOG00000003824)	midn (ENSAPOG00000003794)	ENSAPOG00000003777	ENSAPOG00000003761	si:ch211-212d10.2 (ENSAPOG00000003744)	CILP2 (ENSAPOG00000003733)	yjefn3 (ENSAPOG00000003679)	gatad2ab (ENSAPOG00000003671)	MAU2 (ENSAPOG00000003623)	slc25a42 (ENSAPOG00000003561)	tmem161a (ENSAPOG00000003520) ##22	mef2b (ENSAPOG00000003469)	ENSAPOG00000003437	borcs8 (ENSAPOG00000003430)	rfxank (ENSAPOG00000003419)	borcs8 (ENSAPOG00000003405)	nr2c2ap (ENSAPOG00000003388)	NCAN (ENSAPOG00000003363)	hapln4 (ENSAPOG00000003340)	tm6sf2b (ENSAPOG00000003293)	SBNO2 (ENSAPOG00000003185)	tjp3 (ENSAPOG00000003035)	ARHGAP45 (ENSAPOG00000002977)	POLR2E (ENSAPOG00000002935)	gpx4a (ENSAPOG00000002909)	PIP5K1C (ENSAPOG00000002871)
Bicolor damselfish	MODERN SPECIES	269	POLRMT (ENSSPAG00000018740)	HCN2 (ENSSPAG00000018584)	bsg (ENSSPAG00000018543)	RNF126 (ENSSPAG00000018511)	fstl3 (ENSSPAG00000018495)	CBARP (ENSSPAG00000018458)	atp5f1d (ENSSPAG00000018441)	midn (ENSSPAG00000018411)	ENSSPAG00000018392	si:ch211-212d10.2 (ENSSPAG00000018382)	CILP2 (ENSSPAG00000018356)	yjefn3 (ENSSPAG00000018346)	gatad2ab (ENSSPAG00000018313)	MAU2 (ENSSPAG00000018202)	slc25a42 (ENSSPAG00000018145)	tmem161a (ENSSPAG00000018074) ##22	mef2b (ENSSPAG00000018028)	ENSSPAG00000018015	borcs8 (ENSSPAG00000017982)	rfxank (ENSSPAG00000017971)	nr2c2ap (ENSSPAG00000017960)	ENSSPAG00000017898	ENSSPAG00000017866	hapln4 (ENSSPAG00000017842)	tm6sf2b (ENSSPAG00000017821)	SBNO2 (ENSSPAG00000017717)	tjp3 (ENSSPAG00000017639)	ARHGAP45 (ENSSPAG00000017591)	POLR2E (ENSSPAG00000017556)	gpx4a (ENSSPAG00000017491)	PIP5K1C (ENSSPAG00000017347)
Cichlidae	ANCESTRAL SPECIES	17	ENSGT00940000157113.c	ENSGT00940000161332	ENSGT00390000009230.a	ENSGT00390000017576	ENSGT00510000049027.c	ENSGT01030000234551.i.e.a.a.c	ENSGT01030000234551.i.e.a.a.d.b	ENSGT01030000234551.i.e.a.a.d.a	ENSGT01030000234551.i.e.b	ENSGT00390000018225.A	ENSGT00390000008152.B.a	ENSGT00390000007227.b	ENSGT00390000004097.a.e	ENSGT00390000012198.b.b	ENSGT00940000158163.a	ENSGT00390000000672.a.a ##22	ENSGT00940000160699	ENSGT00940000165199	ENSGT00390000014856	ENSGT00940000160753	ENSGT00390000017748	ENSGT00940000158649.a.a	ENSGT00940000160926	ENSGT00390000012913.a.b	ENSGT00940000159946	ENSGT00940000160036	ENSGT00950000183110.b.a.c	ENSGT00390000013841	ENSGT00940000165680.A	ENSGT00980000198641	ENSGT00940000159258.d
Pseudocrenilabrinae	ANCESTRAL SPECIES	10	ENSGT00940000157113.c	ENSGT00940000161332	ENSGT00390000009230.a	ENSGT00390000017576	ENSGT00510000049027.c	ENSGT01030000234551.i.e.a.a.c	ENSGT01030000234551.i.e.a.a.d.b	ENSGT01030000234551.i.e.a.a.d.a.a	ENSGT01030000234551.i.e.b.e	ENSGT00390000018225.A	ENSGT00390000008152.B.a	ENSGT00390000007227.b	ENSGT00390000004097.a.e	ENSGT00390000012198.b.b	ENSGT00940000158163.a	ENSGT00390000000672.a.a ##22	ENSGT00940000160699	ENSGT00940000165199	ENSGT00390000014856	ENSGT00940000160753	ENSGT00390000017748	ENSGT00940000158649.a.a	ENSGT00940000160926	ENSGT00390000012913.a.b	ENSGT00940000159946	ENSGT00940000160036	ENSGT00950000183110.b.a.c	ENSGT00390000013841	ENSGT00940000165680.A	ENSGT00980000198641	ENSGT00940000159258.d
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	26	ENSGT00940000161332	ENSGT00390000009230.a	ENSGT00390000017576	ENSGT00510000049027.c	ENSGT01030000234551.i.e.a.a.c	ENSGT01030000234551.i.e.a.a.d.b.b	ENSGT01030000234551.i.e.a.a.d.b.a	ENSGT01030000234551.i.e.a.a.d.a.a	ENSGT01030000234551.i.e.b.e	ENSGT00390000018225.A	ENSGT00390000008152.B.a	ENSGT00390000007227.b	ENSGT00390000004097.a.e	ENSGT00390000012198.b.b	ENSGT00940000158163.a	ENSGT00390000000672.a.a ##22	ENSGT00940000160699	ENSGT00940000165199	ENSGT00390000014856	ENSGT00940000160753	ENSGT00390000017748	ENSGT00940000158649.a.a	ENSGT00940000160926	ENSGT00390000012913.a.b	ENSGT00940000159946	ENSGT00940000160036	ENSGT00950000183110.b.a.c	ENSGT00390000013841	ENSGT00940000165680.A	ENSGT00980000198641	ENSGT00940000159258.d
Haplochromini	ANCESTRAL SPECIES	16	ENSGT00940000161332	ENSGT00390000009230.a	ENSGT00390000017576	ENSGT00510000049027.c	ENSGT01030000234551.i.e.a.a.c	ENSGT01030000234551.i.e.a.a.d.b.b	ENSGT01030000234551.i.e.a.a.d.b.a	ENSGT01030000234551.i.e.a.a.d.a.a	ENSGT01030000234551.i.e.b.e	ENSGT00390000018225.A	ENSGT00390000008152.B.a	ENSGT00390000007227.b	ENSGT00390000004097.a.e	ENSGT00390000012198.b.b	ENSGT00940000158163.a	ENSGT00390000000672.a.a ##22	ENSGT00940000160699	ENSGT00940000165199	ENSGT00390000014856	ENSGT00940000160753	ENSGT00390000017748	ENSGT00940000158649.a.a	ENSGT00940000160926	ENSGT00390000012913.a.b	ENSGT00940000159946	ENSGT00940000160036	ENSGT00950000183110.b.a.c	ENSGT00390000013841	ENSGT00980000198641	ENSGT00940000159258.d	ENSGT00940000161659
Haplochromini_A	ANCESTRAL SPECIES	15	ENSGT00940000161332	ENSGT00390000009230.a	ENSGT00390000017576	ENSGT00510000049027.c	ENSGT01030000234551.i.e.a.a.c	ENSGT01030000234551.i.e.a.a.d.b.b	ENSGT01030000234551.i.e.a.a.d.b.a	ENSGT01030000234551.i.e.a.a.d.a.a	ENSGT01030000234551.i.e.b.e	ENSGT00390000018225.A	ENSGT00390000008152.B.a	ENSGT00390000007227.b	ENSGT00390000004097.a.e	ENSGT00390000012198.b.b	ENSGT00940000158163.a	ENSGT00390000000672.a.a ##22	ENSGT00940000160699	ENSGT00940000165199	ENSGT00390000014856	ENSGT00940000160753	ENSGT00390000017748	ENSGT00940000158649.a.a	ENSGT00940000160926	ENSGT00390000012913.a.b	ENSGT00940000159946	ENSGT00940000160036	ENSGT00950000183110.b.a.c	ENSGT00390000013841	ENSGT00980000198641	ENSGT00940000159258.d	ENSGT00940000161659
Haplochromini_B	ANCESTRAL SPECIES	10	ENSGT00940000161332	ENSGT00390000009230.a	ENSGT00390000017576	ENSGT00510000049027.c	ENSGT01030000234551.i.e.a.a.c	ENSGT01030000234551.i.e.a.a.d.b.b	ENSGT01030000234551.i.e.a.a.d.b.a	ENSGT01030000234551.i.e.a.a.d.a.a	ENSGT01030000234551.i.e.b.e	ENSGT00390000018225.A	ENSGT00390000008152.B.a	ENSGT00390000007227.b	ENSGT00390000004097.a.e	ENSGT00390000012198.b.b	ENSGT00940000158163.a	ENSGT00390000000672.a.a ##22	ENSGT00940000160699	ENSGT00940000165199	ENSGT00390000014856	ENSGT00940000160753	ENSGT00390000017748	ENSGT00940000158649.a.a	ENSGT00940000160926	ENSGT00390000012913.a.b	ENSGT00940000159946	ENSGT00940000160036	ENSGT00950000183110.b.a.c	ENSGT00390000013841	ENSGT00980000198641	ENSGT00940000159258.d	ENSGT00940000161659
Eastern happy	MODERN SPECIES	14	RNF126 (ENSACLG00000003847)	fstl3 (ENSACLG00000003890)	CBARP (ENSACLG00000003913)	atp5f1d (ENSACLG00000003934)	midn (ENSACLG00000003950)	ENSACLG00000004325	ENSACLG00000004337	ENSACLG00000004346	ENSACLG00000004365	si:ch211-212d10.2 (ENSACLG00000004384)	CILP2 (ENSACLG00000004394)	yjefn3 (ENSACLG00000004422)	gatad2ab (ENSACLG00000004521)	MAU2 (ENSACLG00000004571)	slc25a42 (ENSACLG00000004664)	tmem161a (ENSACLG00000004706) ##22	mef2b (ENSACLG00000004733)	ENSACLG00000004801	borcs8 (ENSACLG00000004781)	rfxank (ENSACLG00000004808)	nr2c2ap (ENSACLG00000004835)	NCAN (ENSACLG00000005023)	hapln4 (ENSACLG00000005043)	tm6sf2b (ENSACLG00000005059)	SBNO2 (ENSACLG00000005090)	ENSACLG00000005193	ARHGAP45 (ENSACLG00000005229)	POLR2E (ENSACLG00000005254)	gpx4a (ENSACLG00000005282)	PIP5K1C (ENSACLG00000005378)	rab11ba (ENSACLG00000005420)
Zebra mbuna	MODERN SPECIES	1105	CBARP (ENSMZEG00005010159)	atp5f1d (ENSMZEG00005010180)	midn (ENSMZEG00005010194)	ENSMZEG00005010217	ENSMZEG00005010236	ENSMZEG00005010248	ENSMZEG00005010259	ENSMZEG00005010272	ENSMZEG00005010279	si:ch211-212d10.2 (ENSMZEG00005010289)	CILP2 (ENSMZEG00005010305)	yjefn3 (ENSMZEG00005010325)	gatad2ab (ENSMZEG00005010348)	MAU2 (ENSMZEG00005010385)	slc25a42 (ENSMZEG00005010432)	tmem161a (ENSMZEG00005010464) ##22	mef2b (ENSMZEG00005010482)	ENSMZEG00005010505	borcs8 (ENSMZEG00005010515)	rfxank (ENSMZEG00005010523)	nr2c2ap (ENSMZEG00005010533)	ENSMZEG00005010552	ENSMZEG00005010568	hapln4 (ENSMZEG00005010581)	tm6sf2b (ENSMZEG00005010599)	SBNO2 (ENSMZEG00005010682)	ENSMZEG00005010715	ARHGAP45 (ENSMZEG00005010755)	POLR2E (ENSMZEG00005010796)	gpx4a (ENSMZEG00005010823)	PIP5K1C (ENSMZEG00005010892)
P. nyererei	MODERN SPECIES	351	fstl3 (ENSPNYG00000020710)	CBARP (ENSPNYG00000020688)	atp5f1d (ENSPNYG00000020668)	midn (ENSPNYG00000020649)	ENSPNYG00000020612	ENSPNYG00000020561	ENSPNYG00000020547	ENSPNYG00000020500	ENSPNYG00000020462	si:ch211-212d10.2 (ENSPNYG00000020448)	CILP2 (ENSPNYG00000020439)	yjefn3 (ENSPNYG00000020393)	gatad2ab (ENSPNYG00000020347)	MAU2 (ENSPNYG00000020286)	slc25a42 (ENSPNYG00000020240)	tmem161a (ENSPNYG00000020209) ##22	mef2b (ENSPNYG00000020178)	ENSPNYG00000020168	borcs8 (ENSPNYG00000020144)	rfxank (ENSPNYG00000020138)	nr2c2ap (ENSPNYG00000020115)	ENSPNYG00000020100	ENSPNYG00000020076	hapln4 (ENSPNYG00000020059)	tm6sf2b (ENSPNYG00000020025)	SBNO2 (ENSPNYG00000019926)	tjp3 (ENSPNYG00000019859)	ARHGAP45 (ENSPNYG00000019821)	POLR2E (ENSPNYG00000019797)	ENSPNYG00000019769	PIP5K1C (ENSPNYG00000019686)
Burton s mouthbrooder	MODERN SPECIES	307	RNF126 (ENSHBUG00000010085)	fstl3 (ENSHBUG00000010104)	CBARP (ENSHBUG00000010120)	atp5f1d (ENSHBUG00000010138)	midn (ENSHBUG00000000259)	ENSHBUG00000000261	ENSHBUG00000010202	ENSHBUG00000010268	ENSHBUG00000010276	si:ch211-212d10.2 (ENSHBUG00000010297)	CILP2 (ENSHBUG00000010309)	yjefn3 (ENSHBUG00000010318)	gatad2ab (ENSHBUG00000010358)	MAU2 (ENSHBUG00000010427)	slc25a42 (ENSHBUG00000010466)	tmem161a (ENSHBUG00000010506) ##22	mef2b (ENSHBUG00000010551)	ENSHBUG00000010560	borcs8 (ENSHBUG00000010577)	rfxank (ENSHBUG00000010603)	nr2c2ap (ENSHBUG00000010617)	NCAN (ENSHBUG00000010628)	hapln4 (ENSHBUG00000010650)	tm6sf2b (ENSHBUG00000010688)	SBNO2 (ENSHBUG00000010742)	tjp3 (ENSHBUG00000010809)	POLR2E (ENSHBUG00000011099)	ARHGAP45 (ENSHBUG00000000292)
Lyretail cichlid	MODERN SPECIES	361	bsg (ENSNBRG00000023510)	RNF126 (ENSNBRG00000023507)	fstl3 (ENSNBRG00000023499)	CBARP (ENSNBRG00000023473)	atp5f1d (ENSNBRG00000023463)	midn (ENSNBRG00000023452)	ENSNBRG00000023435	ENSNBRG00000023418	ENSNBRG00000023405	si:ch211-212d10.2 (ENSNBRG00000023395)	CILP2 (ENSNBRG00000023381)	yjefn3 (ENSNBRG00000023366)	gatad2ab (ENSNBRG00000023349)	MAU2 (ENSNBRG00000023326)	slc25a42 (ENSNBRG00000023312)	tmem161a (ENSNBRG00000023231) ##22	ENSNBRG00000023218	ENSNBRG00000023209	borcs8 (ENSNBRG00000023199)	rfxank (ENSNBRG00000023175)	nr2c2ap (ENSNBRG00000023156)	ENSNBRG00000023125	hapln4 (ENSNBRG00000023108)	tm6sf2b (ENSNBRG00000023095)	SBNO2 (ENSNBRG00000022968)	ENSNBRG00000022899	ENSNBRG00000022860	ENSNBRG00000022792	POLR2E (ENSNBRG00000022772)	ENSNBRG00000022705
Nile tilapia	MODERN SPECIES	14	bsg (ENSONIG00000002415)	RNF126 (ENSONIG00000002419)	fstl3 (ENSONIG00000039200)	CBARP (ENSONIG00000002423)	atp5f1d (ENSONIG00000002428)	midn (ENSONIG00000040836)	ENSONIG00000002433	ENSONIG00000002441	ENSONIG00000002442	si:ch211-212d10.2 (ENSONIG00000002447)	CILP2 (ENSONIG00000002448)	yjefn3 (ENSONIG00000002450)	gatad2ab (ENSONIG00000002454)	MAU2 (ENSONIG00000002458)	slc25a42 (ENSONIG00000002461)	tmem161a (ENSONIG00000002464) ##22	ENSONIG00000034927	ENSONIG00000002468	borcs8 (ENSONIG00000042174)	nr2c2ap (ENSONIG00000038128)	rfxank (ENSONIG00000002470)	NCAN (ENSONIG00000042723)	hapln4 (ENSONIG00000002482)	tm6sf2b (ENSONIG00000002484)	ENSONIG00000034433	SBNO2 (ENSONIG00000002490)	tjp3 (ENSONIG00000002505)	ARHGAP45 (ENSONIG00000002512)	POLR2E (ENSONIG00000002519)	ENSONIG00000010276	PIP5K1C (ENSONIG00000002529)
Midas cichlid	MODERN SPECIES	505					ENSACIG00000024346	ENSACIG00000024347	ENSACIG00000024348	ENSACIG00000024349	ENSACIG00000024350	si:ch211-212d10.2 (ENSACIG00000024351)	CILP2 (ENSACIG00000024352)	yjefn3 (ENSACIG00000024353)	gatad2ab (ENSACIG00000024354)	MAU2 (ENSACIG00000024355)	slc25a42 (ENSACIG00000024356)	tmem161a (ENSACIG00000024358) ##22	mef2b (ENSACIG00000024359)	ENSACIG00000024360	borcs8 (ENSACIG00000024361)	rfxank (ENSACIG00000024362)	nr2c2ap (ENSACIG00000024363)	ENSACIG00000024364	ENSACIG00000024365	hapln4 (ENSACIG00000024366)	tm6sf2b (ENSACIG00000024367)	SBNO2 (ENSACIG00000024368)	ENSACIG00000024369	ARHGAP45 (ENSACIG00000024370)	POLR2E (ENSACIG00000024371)	gpx4a (ENSACIG00000024372)	PIP5K1C (ENSACIG00000024373)
Cod	MODERN SPECIES	3	ENSGMOG00000011861	fstl3 (ENSGMOG00000033119)	CBARP (ENSGMOG00000034558)	atp5f1d (ENSGMOG00000011884)	midn (ENSGMOG00000037204)	ENSGMOG00000027600	CIRBP (ENSGMOG00000007179)	ENSGMOG00000007191	si:ch211-212d10.2 (ENSGMOG00000007411)	CILP2 (ENSGMOG00000007417)	yjefn3 (ENSGMOG00000007424)	tssk6 (ENSGMOG00000020360)	gatad2ab (ENSGMOG00000007431)	MAU2 (ENSGMOG00000007445)	ENSGMOG00000034212	tmem161a (ENSGMOG00000007468) ##22	mef2b (ENSGMOG00000027133)	ENSGMOG00000028818	borcs8 (ENSGMOG00000007484)	rfxank (ENSGMOG00000007488)	nr2c2ap (ENSGMOG00000035239)	ENSGMOG00000007504	ENSGMOG00000027912	NCAN (ENSGMOG00000007508)	hapln4 (ENSGMOG00000025168)	tm6sf2b (ENSGMOG00000007532)	ENSGMOG00000007542	tjp3 (ENSGMOG00000007562)	ENSGMOG00000035156	ENSGMOG00000007579	ENSGMOG00000007615
Protacanthopterygii	ANCESTRAL SPECIES	13	ENSGT00940000161332	ENSGT00390000009230.a	ENSGT00390000017576	ENSGT00510000049027.c	ENSGT00940000153524.c	ENSGT00940000165622.j	ENSGT00940000153524.d.b	ENSGT01030000234551.i	ENSGT00390000018225.A	ENSGT00390000008152.B.a	ENSGT00390000007227.b	ENSGT00940000160464	ENSGT00390000004097.a.e	ENSGT00390000012198.b.b	ENSGT00940000158163.a	ENSGT00390000000672.a.a ##22	ENSGT00940000160699	ENSGT00940000165199	ENSGT00390000014856	ENSGT00940000160753	ENSGT00390000017748	ENSGT00940000158649.a.a	ENSGT00940000160926	ENSGT00390000012913.a.b.c	ENSGT00940000159946	ENSGT00940000160036	ENSGT00950000183110.b.a.c	ENSGT00390000013841.db.b	ENSGT00940000161913.b	ENSGT00980000198641	ENSGT00940000159258.d
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	11	ENSGT00940000158050.g	ENSGT00390000009230.a.f	ENSGT00390000017576.g.a	ENSGT00510000049027.c.f.a	ENSGT00940000153524.c.e.a	ENSGT00940000165622.j	ENSGT00940000153524.d.b	ENSGT01030000234551.i	ENSGT00390000018225.A.v	ENSGT00390000008152.B.a.g	ENSGT00390000007227.b.`b.a	ENSGT00940000160464.a	ENSGT00390000004097.a.e.e	ENSGT00390000012198.b.b.f	ENSGT00940000158163.a.h	ENSGT00390000000672.a.a.c ##22	ENSGT00940000160699.d	ENSGT00940000165199.d	ENSGT01000000220738	ENSGT00390000017748.a	ENSGT00940000158649.a.a.a	ENSGT00940000160926.d	ENSGT00390000012913.a.b.c	ENSGT00940000159946.e	ENSGT00940000160036.e	ENSGT00950000183110.b.a.c.h	ENSGT00390000013841.db.b.a	ENSGT00980000198641	ENSGT00940000170739	ENSGT00940000159258.d.d	ENSGT00940000163126.a.b.i.b
Salmoninae_a	ANCESTRAL SPECIES	22	ENSGT00940000181603.a	ENSGT00940000158050.h.b.b	ENSGT00390000009230.a.f	ENSGT00390000017576.g.a	ENSGT00510000049027.c.f.a	ENSGT00940000153524.c.e.a	ENSGT00940000153524.d.b	ENSGT01030000234551.i.j	ENSGT00390000018225.A.v	ENSGT00390000008152.B.a.g	ENSGT00390000007227.b.`b.a	ENSGT00940000160464.a	ENSGT00390000004097.a.e.e	ENSGT00390000012198.b.b.f	ENSGT00940000158163.a.h	ENSGT00390000000672.a.a.c ##22	ENSGT00940000160699.d	ENSGT00940000165199.d	ENSGT01000000220738	ENSGT00390000017748.a	ENSGT00940000158649.a.a.a	ENSGT00940000160926.d	ENSGT00390000012913.a.b.c	ENSGT00940000159946.e	ENSGT00940000160036.e	ENSGT00950000183110.b.a.c.h	ENSGT00390000013841.db.b.a	ENSGT00980000198641	ENSGT00940000159258.d.d	ENSGT00940000163126.a.b.i.b	ENSGT00940000158995.a.g
Salmo	ANCESTRAL SPECIES	14	ENSGT00940000181603.a	ENSGT00940000158050.h.b.b	ENSGT00390000009230.a.f	ENSGT00390000017576.g.a	ENSGT00510000049027.c.f.a	ENSGT00940000153524.c.e.a	ENSGT00940000153524.d.b	ENSGT01030000234551.i.j	ENSGT00390000018225.A.v	ENSGT00390000008152.B.a.g	ENSGT00390000007227.b.`b.a	ENSGT00940000160464.a	ENSGT00390000004097.a.e.e	ENSGT00390000012198.b.b.f	ENSGT00940000158163.a.h	ENSGT00390000000672.a.a.c ##22	ENSGT00940000160699.d	ENSGT00940000165199.d	ENSGT00390000017748.a	ENSGT00940000158649.a.a.a	ENSGT00940000160926.d	ENSGT00390000012913.a.b.c	ENSGT00940000159946.e	ENSGT00940000160036.e	ENSGT00950000183110.b.a.c.h	ENSGT00980000198641	ENSGT00940000159258.d.d	ENSGT00940000163126.a.b.i.b	ENSGT00940000158995.a.g	ENSGT00940000163126.a.b.i.a	ENSGT00940000154595.ib
Atlantic salmon	MODERN SPECIES	1	fstl3 (ENSSSAG00000064290)	STK11 (ENSSSAG00000064279)	CBARP (ENSSSAG00000064270)	ATPD (ENSSSAG00000064265)	midn (ENSSSAG00000064259)	ENSSSAG00000064249	ENSSSAG00000083658	ENSSSAG00000102087	si:ch211-212d10.2 (ENSSSAG00000099818)	cilp2 (ENSSSAG00000064229)	yjefn3 (ENSSSAG00000089221)	tssk6 (ENSSSAG00000090280)	gatad2ab (ENSSSAG00000064195)	MAU2 (ENSSSAG00000040517)	ENSSSAG00000087517	tmem161a (ENSSSAG00000063857) ##22	ENSSSAG00000101688	ENSSSAG00000063836	nr2c2ap (ENSSSAG00000063826)	ENSSSAG00000097869	NCAN (ENSSSAG00000063786)	hapln4 (ENSSSAG00000063760)	tm6sf2b (ENSSSAG00000063746)	ENSSSAG00000063326	tjp3 (ENSSSAG00000063260)	ENSSSAG00000058332	gpx4a (ENSSSAG00000058124)	ENSSSAG00000056411	ENSSSAG00000056122	ENSSSAG00000095065	ENSSSAG00000114371
River trout	MODERN SPECIES	14	ENSSTUG00000045095	STK11 (ENSSTUG00000045067)	CBARP (ENSSTUG00000044986)	atp5f1d (ENSSTUG00000044942)	midn (ENSSTUG00000044915)	ENSSTUG00000044877	ENSSTUG00000044843	ENSSTUG00000044825	si:ch211-212d10.2 (ENSSTUG00000044819)	CILP2 (ENSSTUG00000044816)	yjefn3 (ENSSTUG00000044808)	tssk6 (ENSSTUG00000044800)	gatad2ab (ENSSTUG00000044765)	MAU2 (ENSSTUG00000044230)	slc25a42 (ENSSTUG00000044216)	tmem161a (ENSSTUG00000044122) ##22	mef2b (ENSSTUG00000044107)	ENSSTUG00000044103	nr2c2ap (ENSSTUG00000044080)	ENSSTUG00000044071	ENSSTUG00000044063	hapln4 (ENSSTUG00000044054)	tm6sf2b (ENSSTUG00000044043)	ENSSTUG00000043793	tjp3 (ENSSTUG00000043703)	ARHGAP45 (ENSSTUG00000043344)	gpx4a (ENSSTUG00000043325)	PIP5K1C (ENSSTUG00000041728)	ENSSTUG00000041457	marchf2 (ENSSTUG00000041424)	ENSSTUG00000041378
Oncorhynchus	ANCESTRAL SPECIES	8	ENSGT00940000181603.a	ENSGT00940000158050.h.b.b	ENSGT00390000009230.a.f	ENSGT00390000017576.g.a	ENSGT00510000049027.c.f.a	ENSGT00940000153524.c.e.a	ENSGT00940000153524.d.b	ENSGT01030000234551.i.j	ENSGT00390000018225.A.v	ENSGT00390000008152.B.a.g	ENSGT00390000007227.b.`b.a	ENSGT00940000160464.a	ENSGT00390000004097.a.e.e	ENSGT00390000012198.b.b.f	ENSGT00940000158163.a.h	ENSGT00390000000672.a.a.c ##22	ENSGT00940000160699.d	ENSGT00940000165199.d	ENSGT01000000220738	ENSGT00940000160753.h	ENSGT00390000017748.a	ENSGT00940000158649.a.a.a	ENSGT00940000160926.d	ENSGT00390000012913.a.b.c	ENSGT00940000159946.e	ENSGT00940000160036.e	ENSGT00950000183110.b.a.c.h	ENSGT00390000013841.db.b.a	ENSGT00980000198641	ENSGT00940000159258.d.d	ENSGT00940000163126.a.b.i.b
Oncorhynchus_a	ANCESTRAL SPECIES	14	ENSGT00940000158050.h.b.b	ENSGT00390000009230.a.f	ENSGT00390000017576.g.a	ENSGT00510000049027.c.f.a	ENSGT00940000153524.c.e.a	ENSGT00940000153524.d.b	ENSGT01030000234551.i.j	ENSGT00390000018225.A.v	ENSGT00390000008152.B.a.g	ENSGT00390000007227.b.`b.a	ENSGT00940000160464.a	ENSGT00390000004097.a.e.e	ENSGT01100000263722	ENSGT00390000012198.b.b.f	ENSGT00940000158163.a.h	ENSGT00390000000672.a.a.c ##22	ENSGT00940000160699.d	ENSGT00940000165199.d	ENSGT01000000220738	ENSGT00940000160753.h	ENSGT00390000017748.a	ENSGT00940000158649.a.a.a	ENSGT00940000160926.d	ENSGT00390000012913.a.b.c	ENSGT00940000159946.e	ENSGT00940000160036.e	ENSGT00950000183110.b.a.c.h	ENSGT00980000198641	ENSGT00940000170739	ENSGT00940000159258.d.d	ENSGT00940000163126.a.b.i.b
Chinook salmon	MODERN SPECIES	29	CBARP (ENSOTSG00005037805)	atp5f1d (ENSOTSG00005037803)	midn (ENSOTSG00005037802)	ENSOTSG00005037801	ENSOTSG00005037800	GZMH (ENSOTSG00005037798)	si:ch211-212d10.2 (ENSOTSG00005037797)	CILP2 (ENSOTSG00005037796)	yjefn3 (ENSOTSG00005037795)	tssk6 (ENSOTSG00005037794)	gatad2ab (ENSOTSG00005037793)	ENSOTSG00005037789	ENSOTSG00005037787	MAU2 (ENSOTSG00005036299)	slc25a42 (ENSOTSG00005036281)	tmem161a (ENSOTSG00005035966) ##22	mef2b (ENSOTSG00005035957)	ENSOTSG00005035953	ENSOTSG00005035952	rfxank (ENSOTSG00005035951)	nr2c2ap (ENSOTSG00005035949)	ENSOTSG00005035948	NCAN (ENSOTSG00005035947)	hapln4 (ENSOTSG00005035946)	tm6sf2b (ENSOTSG00005035943)	SBNO2 (ENSOTSG00005035723)	tjp3 (ENSOTSG00005035701)	ARHGAP45 (ENSOTSG00005035344)	ENSOTSG00005035333	ENSOTSG00005035332	gpx4a (ENSOTSG00005035330)
Coho salmon	MODERN SPECIES	4	CBARP (ENSOKIG00005004044)	atp5f1d (ENSOKIG00005004066)	midn (ENSOKIG00005004082)	ENSOKIG00005004090	ENSOKIG00005004096	ENSOKIG00005004109	ENSOKIG00005004119	si:ch211-212d10.2 (ENSOKIG00005004132)	CILP2 (ENSOKIG00005004138)	yjefn3 (ENSOKIG00005004154)	tssk6 (ENSOKIG00005004178)	gatad2ab (ENSOKIG00005004194)	ENSOKIG00005004221	MAU2 (ENSOKIG00005004358)	SLC25A42 (ENSOKIG00005004848)	tmem161a (ENSOKIG00005004891) ##22	mef2b (ENSOKIG00005005266)	ENSOKIG00005005279	ENSOKIG00005005283	nr2c2ap (ENSOKIG00005005292)	NCAN (ENSOKIG00005005309)	hapln4 (ENSOKIG00005005332)	tm6sf2b (ENSOKIG00005005345)	SBNO2 (ENSOKIG00005005403)	tjp3 (ENSOKIG00005005822)	ARHGAP45 (ENSOKIG00005005934)	gpx4a (ENSOKIG00005006312)	POLR2E (ENSOKIG00005006325)	ENSOKIG00005006382	PIP5K1C (ENSOKIG00005006405)	ENSOKIG00005006489
Rainbow trout	MODERN SPECIES	26	ENSOMYG00000048379	STK11 (ENSOMYG00000016307)	CBARP (ENSOMYG00000016300)	atp5f1d (ENSOMYG00000016264)	midn (ENSOMYG00000016235)	ENSOMYG00000016215	ENSOMYG00000016201	ENSOMYG00000016193	ENSOMYG00000072025	CILP2 (ENSOMYG00000016177)	yjefn3 (ENSOMYG00000070926)	tssk6 (ENSOMYG00000016174)	gatad2ab (ENSOMYG00000016004)	MAU2 (ENSOMYG00000015844)	ENSOMYG00000015801	tmem161a (ENSOMYG00000015562) ##22	ENSOMYG00000015730	ENSOMYG00000059712	ENSOMYG00000015751	ENSOMYG00000056098	ENSOMYG00000052569	nr2c2ap (ENSOMYG00000015703)	NCAN (ENSOMYG00000015644)	hapln4 (ENSOMYG00000015631)	tm6sf2b (ENSOMYG00000015619)	ENSOMYG00000011414	tjp3 (ENSOMYG00000011022)	ENSOMYG00000010704	ENSOMYG00000061676	gpx4a (ENSOMYG00000054982)	ENSOMYG00000010544
Huchen	MODERN SPECIES	402					midn (ENSHHUG00000003303)	ENSHHUG00000003309	ENSHHUG00000003348	ENSHHUG00000003356	si:ch211-212d10.2 (ENSHHUG00000003360)	CILP2 (ENSHHUG00000003367)	yjefn3 (ENSHHUG00000003427)	tssk6 (ENSHHUG00000003446)	gatad2ab (ENSHHUG00000003455)	MAU2 (ENSHHUG00000003472)	slc25a42 (ENSHHUG00000003580)	tmem161a (ENSHHUG00000003589) ##22	mef2b (ENSHHUG00000003762)	ENSHHUG00000003811	ENSHHUG00000003819	ENSHHUG00000003851	nr2c2ap (ENSHHUG00000003863)	ENSHHUG00000003869	hapln4 (ENSHHUG00000003890)
Salmoninae	ANCESTRAL SPECIES	248	ENSGT00940000161332.j	ENSGT00940000181603	ENSGT00940000158050.h.b.b	ENSGT00940000158050.h.b.a	ENSGT00390000009230.a.e	ENSGT00390000017576.g.b	ENSGT00510000049027.c.f.b	ENSGT00940000153524.c.e.b	ENSGT00940000153524.d.a	ENSGT00390000008152.B.a.h	ENSGT00390000007227.b.`b.b	ENSGT00940000160464.b	ENSGT00390000004097.a.e.f	ENSGT00390000012198.b.b.e	ENSGT00940000158163.a.g	ENSGT00390000000672.a.a.d ##22	ENSGT00940000160699.c	ENSGT00940000165199.c	ENSGT00390000014856	ENSGT00940000160753	ENSGT00390000017748.b	ENSGT00940000175923	ENSGT00940000158649.a.a.b	ENSGT00940000160926.c	ENSGT00390000012913.a.b.d	ENSGT00940000159946.f	ENSGT00940000160036.f	ENSGT00950000183110.b.a.c.g	ENSGT00390000013841.db.b.b	ENSGT00940000161913.b	ENSGT00940000159258.d.c
Salmoninae_a	ANCESTRAL SPECIES	1	ENSGT00940000161332.j	ENSGT00940000181603.b	ENSGT00940000158050.h.b.a	ENSGT00390000009230.a.e	ENSGT00390000017576.g.b	ENSGT00510000049027.c.f.b	ENSGT00940000153524.c.e.b	ENSGT00940000153524.d.a	ENSGT01030000234551.i.i	ENSGT00390000008152.B.a.h	ENSGT00390000007227.b.`b.b	ENSGT00940000160464.b	ENSGT00390000004097.a.e.f	ENSGT00390000012198.b.b.e	ENSGT00940000158163.a.g	ENSGT00390000000672.a.a.d ##22	ENSGT00940000160699.c	ENSGT00940000165199.c	ENSGT00390000014856	ENSGT00940000160753	ENSGT00390000017748.b	ENSGT00940000158649.a.a.b	ENSGT00940000160926.c	ENSGT00390000012913.a.b.d	ENSGT00940000159946.f	ENSGT00940000160036.f	ENSGT00950000183110.b.a.c.g	ENSGT00390000013841.db.b.b	ENSGT00940000161913.b	ENSGT00940000159258.d.c	ENSGT00940000163126.a.b.j.b
Salmo	ANCESTRAL SPECIES	9	ENSGT00940000157113.c.a	ENSGT00940000161332.j	ENSGT00940000158050.h.b.a	ENSGT00390000009230.a.e	ENSGT00390000017576.g.b	ENSGT00510000049027.c.f.b	ENSGT00940000153524.c.e.b	ENSGT00940000153524.d.a	ENSGT01030000234551.i.i	ENSGT00390000008152.B.a.h	ENSGT00390000007227.b.`b.b	ENSGT00940000160464.b	ENSGT00390000004097.a.e.f	ENSGT00390000012198.b.b.e	ENSGT00940000158163.a.g	ENSGT00390000000672.a.a.d ##22	ENSGT00940000160699.c	ENSGT00940000165199.c	ENSGT00390000014856	ENSGT00940000160753	ENSGT00940000158649.a.a.b	ENSGT00940000160926.c	ENSGT00390000012913.a.b.d	ENSGT00940000159946.f	ENSGT00940000160036.f	ENSGT00950000183110.b.a.c.g	ENSGT00390000013841.db.b.b	ENSGT00940000161913.b	ENSGT00940000159258.d.c	ENSGT00940000163126.a.b.j.b	ENSGT00940000158995.a.h
River trout	MODERN SPECIES	8	RNF126 (ENSSTUG00000011546)	fstl3 (ENSSTUG00000011532)	STK11 (ENSSTUG00000011517)	CBARP (ENSSTUG00000011506)	atp5f1d (ENSSTUG00000011488)	midn (ENSSTUG00000011464)	ENSSTUG00000011451	ENSSTUG00000011424	ENSSTUG00000011404	CILP2 (ENSSTUG00000011394)	yjefn3 (ENSSTUG00000011367)	tssk6 (ENSSTUG00000011358)	gatad2ab (ENSSTUG00000011246)	MAU2 (ENSSTUG00000011044)	slc25a42 (ENSSTUG00000011031)	tmem161a (ENSSTUG00000010960) ##22	mef2b (ENSSTUG00000010948)	ENSSTUG00000010945	borcs8 (ENSSTUG00000010930)	rfxank (ENSSTUG00000010912)	NCAN (ENSSTUG00000010848)	hapln4 (ENSSTUG00000010840)	tm6sf2b (ENSSTUG00000010793)	ENSSTUG00000010790	ENSSTUG00000010783	SBNO2 (ENSSTUG00000010644)	ENSSTUG00000010626	tjp3 (ENSSTUG00000010519)	POLR2E (ENSSTUG00000010487)	GPX4 (ENSSTUG00000010445)	ENSSTUG00000010440
Atlantic salmon	MODERN SPECIES	7	fstl3 (ENSSSAG00000097227)	STK11 (ENSSSAG00000065291)	CBARP (ENSSSAG00000121542)	atp5f1d (ENSSSAG00000039718)	midn (ENSSSAG00000039778)	ENSSSAG00000116581	ENSSSAG00000086926	ENSSSAG00000039849	CILP2 (ENSSSAG00000039906)	AIBP (ENSSSAG00000040025)	ENSSSAG00000005558	tssk6 (ENSSSAG00000111745)	gatad2ab (ENSSSAG00000117630)	MAU2 (ENSSSAG00000064128)	ENSSSAG00000100915	tmem161a (ENSSSAG00000041706) ##22	mef2b (ENSSSAG00000041843)	ENSSSAG00000041883	borcs8 (ENSSSAG00000041888)	rfxank (ENSSSAG00000041890)	NCAN (ENSSSAG00000041912)	hpln4 (ENSSSAG00000041956)	tm6sf2b (ENSSSAG00000041983)	ENSSSAG00000084566	ENSSSAG00000042331	tjp3 (ENSSSAG00000053555)	ARHGAP45 (ENSSSAG00000054462)	ENSSSAG00000056723	GPX4 (ENSSSAG00000056734)	ENSSSAG00000056764	ENSSSAG00000084042
Oncorhynchus	ANCESTRAL SPECIES	2	ENSGT00940000161332.j	ENSGT00940000181603.b	ENSGT00940000158050.h.b.a	ENSGT00390000009230.a.e	ENSGT00390000017576.g.b	ENSGT00510000049027.c.f.b	ENSGT00940000153524.c.e.b	ENSGT00940000153524.d.a	ENSGT01030000234551.i.i	ENSGT00390000008152.B.a.h	ENSGT00390000007227.b.`b.b	ENSGT00940000160464.b	ENSGT00390000004097.a.e.f	ENSGT00390000012198.b.b.e	ENSGT00940000158163.a.g	ENSGT00390000000672.a.a.d ##22	ENSGT00940000160699.c	ENSGT00940000165199.c	ENSGT00390000014856	ENSGT00940000160753.g	ENSGT00390000017748.b	ENSGT00940000158649.a.a.b	ENSGT00940000160926.c	ENSGT00390000012913.a.b.d	ENSGT00940000159946.f	ENSGT00940000160036.f	ENSGT00390000013841.db.b.b	ENSGT00940000161913.b	ENSGT00940000159258.d.c	ENSGT00940000161659.z	ENSGT00940000158995.a.h
Oncorhynchus_a	ANCESTRAL SPECIES	1	ENSGT00940000157113.c.a	ENSGT00940000161332.j	ENSGT00940000158050.h.b.a	ENSGT00390000009230.a.e	ENSGT00390000017576.g.b	ENSGT00510000049027.c.f.b	ENSGT00940000153524.c.e.b	ENSGT00940000153524.d.a.a	ENSGT01030000234551.i.i	ENSGT00390000008152.B.a.h	ENSGT00390000007227.b.`b.b	ENSGT00940000160464.b	ENSGT00390000004097.a.e.f	ENSGT00390000012198.b.b.e	ENSGT00940000158163.a.g	ENSGT00390000000672.a.a.d ##22	ENSGT00940000160699.c	ENSGT00940000165199.c	ENSGT00390000014856	ENSGT00940000160753.g	ENSGT00390000017748.b	ENSGT00940000158649.a.a.b	ENSGT00940000160926.c	ENSGT00390000012913.a.b.d	ENSGT00940000159946.f	ENSGT00940000160036.f	ENSGT00390000013841.db.b.b	ENSGT00940000161913.b	ENSGT00940000159258.d.c	ENSGT00940000161659.z	ENSGT00940000158995.a.h
Coho salmon	MODERN SPECIES	24	fstl3 (ENSOKIG00005008165)	STK11 (ENSOKIG00005008141)	CBARP (ENSOKIG00005008129)	atp5f1d (ENSOKIG00005008101)	midn (ENSOKIG00005008083)	ENSOKIG00005008074	ENSOKIG00005008053	ENSOKIG00005008029	ENSOKIG00005008021	CILP2 (ENSOKIG00005008001)	yjefn3 (ENSOKIG00005007960)	tssk6 (ENSOKIG00005007940)	gatad2ab (ENSOKIG00005007799)	MAU2 (ENSOKIG00005007264)	slc25a42 (ENSOKIG00005007107)	tmem161a (ENSOKIG00005007019) ##22	mef2b (ENSOKIG00005006985)	ENSOKIG00005006978	borcs8 (ENSOKIG00005006961)	rfxank (ENSOKIG00005006934)	nr2c2ap (ENSOKIG00005006917)	ENSOKIG00005006913	NCAN (ENSOKIG00005006893)	hapln4 (ENSOKIG00005006870)	tm6sf2b (ENSOKIG00005006832)	SBNO2 (ENSOKIG00005003865)	tjp3 (ENSOKIG00005003661)	POLR2E (ENSOKIG00005003644)	gpx4a (ENSOKIG00005003635)	PIP5K1C (ENSOKIG00005003580)	ENSOKIG00005003533
Chinook salmon	MODERN SPECIES	2891		fstl3 (ENSOTSG00005020419)	STK11 (ENSOTSG00005020418)	ENSOTSG00005033148	atp5f1d (ENSOTSG00005033145)	midn (ENSOTSG00005033144)	ENSOTSG00005033142	ENSOTSG00005033139	ENSOTSG00005033138	CILP2 (ENSOTSG00005033137)	yjefn3 (ENSOTSG00005033136)	tssk6 (ENSOTSG00005033133)	gatad2ab (ENSOTSG00005033120)	MAU2 (ENSOTSG00005032756)	slc25a42 (ENSOTSG00005032742)	tmem161a (ENSOTSG00005032737) ##22	mef2b (ENSOTSG00005032735)	ENSOTSG00005032733	borcs8 (ENSOTSG00005032732)	rfxank (ENSOTSG00005032730)	nr2c2ap (ENSOTSG00005032729)	ENSOTSG00005032726	ENSOTSG00005032723	ENSOTSG00005032721	ENSOTSG00005032720	ENSOTSG00005032718	ENSOTSG00005032717	ENSOTSG00005032713	ENSOTSG00005032710	ENSOTSG00005032709	ENSOTSG00005032707
Rainbow trout	MODERN SPECIES		atp5f1d (ENSOMYG00000019629)	ENSOMYG00000076162	ENSOMYG00000062455	midn (ENSOMYG00000019603)	ENSOMYG00000077875	ENSOMYG00000019584	cirbp (ENSOMYG00000066196)	ENSOMYG00000019574	CILP2 (ENSOMYG00000019546)	yjefn3 (ENSOMYG00000019527)	tssk6 (ENSOMYG00000019509)	gatad2ab (ENSOMYG00000019491)	MAU2 (ENSOMYG00000019371)	ENSOMYG00000019313	ENSOMYG00000071846	tmem161a (ENSOMYG00000019143) ##22	mef2b (ENSOMYG00000019090)	ENSOMYG00000053059	ENSOMYG00000071292	ENSOMYG00000071441	ENSOMYG00000019081	borcs8 (ENSOMYG00000019073)	rfxank (ENSOMYG00000019053)	nr2c2ap (ENSOMYG00000018999)	ENSOMYG00000018972	hapln4 (ENSOMYG00000018953)	tm6sf2b (ENSOMYG00000018927)	ENSOMYG00000017800	ENSOMYG00000017619	ENSOMYG00000017608	ENSOMYG00000017142
Huchen	MODERN SPECIES	1055										CILP2 (ENSHHUG00000049030)	yjefn3 (ENSHHUG00000049022)	tssk6 (ENSHHUG00000049007)	gatad2ab (ENSHHUG00000048990)	MAU2 (ENSHHUG00000048901)	slc25a42 (ENSHHUG00000048892)	tmem161a (ENSHHUG00000048849) ##22	mef2b (ENSHHUG00000048841)	ENSHHUG00000048840	borcs8 (ENSHHUG00000048833)	rfxank (ENSHHUG00000048831)	ENSHHUG00000048830	ENSHHUG00000048827	ENSHHUG00000048829	ENSHHUG00000048825	ENSHHUG00000048822	rbm5 (ENSHHUG00000048796)
Northern pike	MODERN SPECIES	7	fstl3 (ENSELUG00000019463)	STK11 (ENSELUG00000000855)	CBARP (ENSELUG00000019511)	atp5f1d (ENSELUG00000000858)	midn (ENSELUG00000019565)	ENSELUG00000019588	CIRBP (ENSELUG00000019617)	ENSELUG00000019758	ENSELUG00000000867	CILP2 (ENSELUG00000019805)	yjefn3 (ENSELUG00000019850)	tssk6 (ENSELUG00000019867)	gatad2ab (ENSELUG00000019905)	MAU2 (ENSELUG00000019996)	slc25a42 (ENSELUG00000020027)	tmem161a (ENSELUG00000020049) ##22	mef2b (ENSELUG00000020071)	ENSELUG00000020075	borcs8 (ENSELUG00000020090)	rfxank (ENSELUG00000032127)	nr2c2ap (ENSELUG00000020134)	NCAN (ENSELUG00000020141)	hapln4 (ENSELUG00000020165)	tm6sf2b (ENSELUG00000020227)	SBNO2 (ENSELUG00000020457)	tjp3 (ENSELUG00000020504)	ARHGAP45 (ENSELUG00000020523)	polr2e (ENSELUG00000020646)	GPX4 (ENSELUG00000001177)	PIP5K1C (ENSELUG00000020850)	ENSELUG00000000916
Otomorpha	ANCESTRAL SPECIES	5	ENSGT00940000156523.b.c	ENSGT00940000159142	ENSGT00940000157113.c	ENSGT00940000161332	ENSGT00390000009230.a	ENSGT00390000017576	ENSGT00510000049027.c	ENSGT00940000165622.a	ENSGT01030000234551.i	ENSGT00390000018225.A	ENSGT00390000008152.B.a	ENSGT00390000007227.b	ENSGT00940000160464	ENSGT00390000004097.a.e	ENSGT00390000012198.b	ENSGT00390000000672.a.a ##22	ENSGT00940000160699	ENSGT00940000165199	ENSGT00390000014856	ENSGT00940000160753	ENSGT00390000017748	ENSGT00940000158649.a.a	ENSGT00940000160926	ENSGT00390000012913.a.b	ENSGT00940000159946.g	ENSGT00940000160036	ENSGT00950000183110.b.a.c	ENSGT00940000159946.h	ENSGT00950000183110.b.a.d	ENSGT00390000013841	ENSGT00940000161913
Clupeiformes	ANCESTRAL SPECIES	9	ENSGT00940000156523.b.c	ENSGT00940000159142	ENSGT00940000157113.c	ENSGT00940000161332	ENSGT00390000009230.a	ENSGT00390000017576	ENSGT00510000049027.c	ENSGT00940000165622.a	ENSGT01030000234551.i	ENSGT00390000018225.A	ENSGT00390000008152.B.a	ENSGT00390000007227.b	ENSGT00940000160464	ENSGT00390000004097.a.e	ENSGT00390000012198.b.c.a	ENSGT00390000000672.a.a ##22	ENSGT00940000160699	ENSGT00940000165199	ENSGT00390000014856	ENSGT00940000160753	ENSGT00390000017748	ENSGT00940000158649.a.a	ENSGT00940000160926	ENSGT00390000012913.a.b	ENSGT00940000159946.g	ENSGT00940000160036	ENSGT00950000183110.b.a.c	ENSGT00940000170739	ENSGT00940000165680.A	ENSGT00940000159258.d	ENSGT00940000163126.a.b
Atlantic herring	MODERN SPECIES	1						ENSCHAG00000012699	cirbpb (ENSCHAG00000012681)	ENSCHAG00000012667	si:ch211-212d10.2 (ENSCHAG00000012659)	CILP2 (ENSCHAG00000012648)	yjefn3 (ENSCHAG00000012645)	ENSCHAG00000012639	tssk6 (ENSCHAG00000012632)	gatad2ab (ENSCHAG00000012628)	MAU2 (ENSCHAG00000012511)	tmem161a (ENSCHAG00000012435) ##22	mef2b (ENSCHAG00000012380)	ENSCHAG00000012369	borcs8 (ENSCHAG00000012351)	rfxank (ENSCHAG00000012325)	nr2c2ap (ENSCHAG00000012339)	NCAN (ENSCHAG00000012307)	hapln4 (ENSCHAG00000012298)	tm6sf2b (ENSCHAG00000012276)	SBNO2 (ENSCHAG00000011978)	tjp3 (ENSCHAG00000011857)	ARHGAP45 (ENSCHAG00000010939)	ENSCHAG00000010805	PIP5K1C (ENSCHAG00000009971)	ENSCHAG00000009795	MAP1S (ENSCHAG00000009783)
Denticle herring	MODERN SPECIES	4	fgf22 (ENSDCDG00000019751)	POLRMT (ENSDCDG00000019428)	HCN2 (ENSDCDG00000019108)	bsg (ENSDCDG00000019094)	fstl3 (ENSDCDG00000019088)	CBARP (ENSDCDG00000019085)	atp5f1d (ENSDCDG00000019082)	midn (ENSDCDG00000019079)	cirbpb (ENSDCDG00000019075)	ENSDCDG00000019070	si:ch211-212d10.2 (ENSDCDG00000019068)	CILP2 (ENSDCDG00000019066)	yjefn3 (ENSDCDG00000019060)	gatad2ab (ENSDCDG00000019054)	MAU2 (ENSDCDG00000019045)	tmem161a (ENSDCDG00000018989) ##22	mef2b (ENSDCDG00000018974)	ENSDCDG00000018965	borcs8 (ENSDCDG00000018961)	rfxank (ENSDCDG00000018958)	nr2c2ap (ENSDCDG00000018947)	ENSDCDG00000032481	NCAN (ENSDCDG00000032425)	hapln4 (ENSDCDG00000032416)	tm6sf2b (ENSDCDG00000032415)	SBNO2 (ENSDCDG00000032402)	tjp3 (ENSDCDG00000032292)	ARHGAP45 (ENSDCDG00000031528)	ENSDCDG00000031508	ENSDCDG00000031504	ENSDCDG00000031414
Otophysi	ANCESTRAL SPECIES	52	ENSGT00940000161721	ENSGT00390000008060	ENSGT00940000156523.b.c	ENSGT00940000159142	ENSGT00940000161332	ENSGT00390000009230.a	ENSGT00390000017576	ENSGT00510000049027.c	ENSGT00940000165622.a	ENSGT01030000234551.i	ENSGT00910000144271.C.eb	ENSGT00390000008152.B.a	ENSGT00390000007227.b	ENSGT00940000160464	ENSGT00390000004097.a.e	ENSGT00390000000672.a.a ##22	ENSGT00940000160699	ENSGT00940000165199	ENSGT00390000014856	ENSGT00940000160753	ENSGT00390000017748	ENSGT00940000158649.a.a	ENSGT00940000160926	ENSGT00390000012913.a.b	ENSGT00940000159946.g	ENSGT00940000160036	ENSGT00950000183110.b.a.c	ENSGT00390000013841	ENSGT00940000161913	ENSGT00940000170739	ENSGT00940000159258.c
Characiphysae	ANCESTRAL SPECIES	28	ENSGT00910000144271.B.b.a.a.a	ENSGT00940000161721	ENSGT00390000008060	ENSGT00940000156523.b.c	ENSGT00940000159142	ENSGT00940000161332	ENSGT00390000009230.a	ENSGT00390000017576	ENSGT00510000049027.c	ENSGT00940000165622.a	ENSGT00910000144271.C.eb	ENSGT00390000008152.B.a	ENSGT00390000007227.b	ENSGT00940000160464	ENSGT00390000004097.a.e	ENSGT00390000000672.a.a ##22	ENSGT00940000160699	ENSGT00940000165199	ENSGT00390000014856	ENSGT00940000160753	ENSGT00390000017748	ENSGT00940000158649.a.a	ENSGT00940000160926	ENSGT00390000012913.a.b	ENSGT00940000159946.g	ENSGT00940000160036	ENSGT00950000183110.b.a.c	ENSGT00980000198641	ENSGT00940000159258.d	ENSGT00940000163126.a.b	ENSGT00940000158995.a
Characiphysae_b	ANCESTRAL SPECIES	25	ENSGT00940000161721	ENSGT00390000008060	ENSGT00940000156523.b.c	ENSGT00940000159142	ENSGT00940000161332	ENSGT00390000009230.a	ENSGT00390000017576	ENSGT00510000049027.c	ENSGT00940000165622.a	ENSGT00910000144271.C.eb	ENSGT01030000234551.i	ENSGT00390000008152.B.a	ENSGT00390000007227.b	ENSGT00940000160464	ENSGT00390000004097.a.e	ENSGT00390000000672.a.a ##22	ENSGT00940000160699	ENSGT00940000165199	ENSGT00390000014856	ENSGT00940000160753	ENSGT00390000017748	ENSGT00940000158649.a.a	ENSGT00940000160926	ENSGT00390000012913.a.b	ENSGT00940000159946.g	ENSGT00940000160036	ENSGT00950000183110.b.a.c	ENSGT00980000198641	ENSGT00940000159258.d	ENSGT00940000163126.a.b	ENSGT00940000158995.a
Characoidei	ANCESTRAL SPECIES	26	ENSGT00940000161721	ENSGT00390000008060	ENSGT00940000156523.b.c	ENSGT00940000159142	ENSGT00940000161332	ENSGT00390000009230.a	ENSGT00390000017576	ENSGT00510000049027.c	ENSGT00940000165622.a	ENSGT00910000144271.C.eb	ENSGT01030000234551.i	ENSGT00390000008152.B.a	ENSGT00390000007227.b	ENSGT00940000160464	ENSGT00390000004097.a.e	ENSGT00390000000672.a.a ##22	ENSGT00940000160699	ENSGT00940000165199	ENSGT00390000014856	ENSGT00940000160753	ENSGT00390000017748	ENSGT00940000158649.a.a	ENSGT00940000160926	ENSGT00390000012913.a.b	ENSGT00940000159946.g	ENSGT00940000160036	ENSGT00950000183110.b.a.c	ENSGT00980000198641	ENSGT00940000159258.d	ENSGT00940000163126.a.b	ENSGT00940000161659
Red-bellied piranha	MODERN SPECIES	74	ENSPNAG00000019675	fgf22 (ENSPNAG00000019687)	POLRMT (ENSPNAG00000019790)	HCN2 (ENSPNAG00000019842)	bsg (ENSPNAG00000019871)	fstl3 (ENSPNAG00000003613)	CBARP (ENSPNAG00000019901)	atp5f1d (ENSPNAG00000019916)	midn (ENSPNAG00000019962)	cirbpb (ENSPNAG00000019997)	ENSPNAG00000020007	CILP2 (ENSPNAG00000020016)	yjefn3 (ENSPNAG00000020042)	tssk6 (ENSPNAG00000020053)	gatad2ab (ENSPNAG00000020064)	tmem161a (ENSPNAG00000005665) ##22	mef2b (ENSPNAG00000020096)	ENSPNAG00000020104	borcs8 (ENSPNAG00000020129)	rfxank (ENSPNAG00000020139)	nr2c2ap (ENSPNAG00000003630)	NCAN (ENSPNAG00000020159)	hapln4 (ENSPNAG00000020181)	tm6sf2b (ENSPNAG00000020190)	SBNO2 (ENSPNAG00000020260)	tjp3 (ENSPNAG00000020314)	ARHGAP45 (ENSPNAG00000020341)	ENSPNAG00000020372	PIP5K1C (ENSPNAG00000020409)	rab11ba (ENSPNAG00000020475)	marchf2 (ENSPNAG00000020483)
Mexicana tetra	MODERN SPECIES	20	ENSAMXG00000036406	gpc5b (ENSAMXG00000015368)	gpc1a (ENSAMXG00000015392)	ENSAMXG00000015434	hsh2d (ENSAMXG00000040655)	tpm4a (ENSAMXG00000036267)	fstl3 (ENSAMXG00000037779)	CBARP (ENSAMXG00000033145)	atp5f1d (ENSAMXG00000015570)	midn (ENSAMXG00000015589)	cirbpb (ENSAMXG00000015612)	ENSAMXG00000015658	CILP2 (ENSAMXG00000015685)	yjefn3 (ENSAMXG00000015707)	gatad2ab (ENSAMXG00000035363)	tmem161a (ENSAMXG00000031277) ##22	ENSAMXG00000032225	mef2b (ENSAMXG00000036998)	borcs8 (ENSAMXG00000042276)	ENSAMXG00000037896	rfxank (ENSAMXG00000037392)	nr2c2ap (ENSAMXG00000015810)	NCAN (ENSAMXG00000015830)	ENSAMXG00000041661	hapln4 (ENSAMXG00000015851)	tm6sf2b (ENSAMXG00000032223)	SBNO2 (ENSAMXG00000015881)	tjp3 (ENSAMXG00000015916)	ARHGAP45 (ENSAMXG00000015968)	gpx4a (ENSAMXG00000015995)	PIP5K1C (ENSAMXG00000016009)
Electric eel	MODERN SPECIES	117	HCN2 (ENSEEEG00000022480)	bsg (ENSEEEG00000022478)	fstl3 (ENSEEEG00000022476)	ENSEEEG00000022475	ENSEEEG00000022474	ENSEEEG00000022473	CBARP (ENSEEEG00000022472)	atp5f1d (ENSEEEG00000022471)	midn (ENSEEEG00000022470)	cirbpb (ENSEEEG00000022469)	ENSEEEG00000022468	CILP2 (ENSEEEG00000022467)	yjefn3 (ENSEEEG00000022466)	ENSEEEG00000022464	gatad2ab (ENSEEEG00000022463)	tmem161a (ENSEEEG00000022458) ##22	mef2b (ENSEEEG00000022455)	ENSEEEG00000022454	borcs8 (ENSEEEG00000022453)	rfxank (ENSEEEG00000022452)	nr2c2ap (ENSEEEG00000022450)	ENSEEEG00000022449	ENSEEEG00000022447	hapln4 (ENSEEEG00000022435)	SBNO2 (ENSEEEG00000022433)	tjp3 (ENSEEEG00000022421)	ARHGAP45 (ENSEEEG00000022349)	ENSEEEG00000022337
Channel catfish	MODERN SPECIES	1	ENSIPUG00000000873	ENSIPUG00000000870	ENSIPUG00000000863	Fgf10 (ENSIPUG00000000857)	polrmt (ENSIPUG00000000789)	HCN2 (ENSIPUG00000000772)	bsg (ENSIPUG00000000757)	FSTL3 (ENSIPUG00000000744)	cbarp (ENSIPUG00000000735)	atp5d (ENSIPUG00000000726)	midn (ENSIPUG00000000710)	cirbpb (ENSIPUG00000000698)	Cilp (ENSIPUG00000000691)	yjefn3 (ENSIPUG00000000685)	GATAD2A (ENSIPUG00000000676)	tmem161a (ENSIPUG00000000670) ##22	mef2b (ENSIPUG00000000662)	tmem221 (ENSIPUG00000000648)	borcs8 (ENSIPUG00000000631)	rfxank (ENSIPUG00000000622)	nr2c2ap (ENSIPUG00000000609)	NCAN (ENSIPUG00000000592)	hapln4 (ENSIPUG00000000569)	SBNO2 (ENSIPUG00000000537)	tjp3 (ENSIPUG00000000521)	ARHGAP45 (ENSIPUG00000000496)	gpx4a (ENSIPUG00000000491)	gpx4a (ENSIPUG00000025109)	Pip5k1c (ENSIPUG00000025104)	rab11b (ENSIPUG00000025100)	march2 (ENSIPUG00000025099)
Cyprinoidei	ANCESTRAL SPECIES	17	ENSGT00940000161721	ENSGT00390000008060	ENSGT00940000156523.b.c	ENSGT00940000159142	ENSGT00940000161332	ENSGT00390000009230.a	ENSGT00390000017576	ENSGT00510000049027.c	ENSGT00940000165622.a	ENSGT01030000234551.i	ENSGT00910000144271.C.eb	ENSGT00390000008152.B.a	ENSGT00390000007227.b	ENSGT00940000160464	ENSGT00390000004097.a.e	ENSGT00390000000672.a.a ##22	ENSGT00940000160699	ENSGT00940000165199	ENSGT00390000014856	ENSGT00940000160753	ENSGT00390000017748	ENSGT00940000158649.a.a	ENSGT00940000160926	ENSGT00390000012913.a.b	ENSGT00940000159946.g	ENSGT00940000160036	ENSGT00950000183110.b.a.c	ENSGT00390000013841	ENSGT00940000161913	ENSGT00940000170739	ENSGT00940000159258.c
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	503	ENSGT00910000144271.B.b.a.a.a.d.b	ENSGT00940000161721.b	ENSGT00390000008060.a	ENSGT00940000156523.b.c.a	ENSGT00940000159142.cb	ENSGT00940000161332.g	ENSGT00390000009230.a.d	ENSGT00390000017576.a.a.a.a	ENSGT00510000049027.c.h.b	ENSGT00940000165622.a.a	ENSGT00910000144271.C.eb.a.b	ENSGT00390000008152.B.a.f	ENSGT00390000007227.b.o.a	ENSGT00940000160464.f	ENSGT00390000004097.a.e.b	ENSGT00390000000672.a.a.e ##22	ENSGT00940000160699.a	ENSGT00940000165199.b	ENSGT00390000014856.k	ENSGT00940000160753.d	ENSGT00390000017748.d.a.a	ENSGT00940000158649.a.a.q.b.a.b
Goldfish	DUPLICATION
Goldfish	MODERN SPECIES	2868								cirbpb (ENSCARG00000040077)	ENSCARG00000040070	CILP2 (ENSCARG00000040044)	si:ch211-212d10.2 (ENSCARG00000040003)	yjefn3 (ENSCARG00000039980)	tssk6 (ENSCARG00000039972)	gatad2ab (ENSCARG00000039832)	tmem161a (ENSCARG00000039783) ##22	ENSCARG00000039740 ##22	mef2b (ENSCARG00000039716)	ENSCARG00000039703	borcs8 (ENSCARG00000039647)	rfxank (ENSCARG00000039616)	nr2c2ap (ENSCARG00000039567)	ENSCARG00000060457
Goldfish	MODERN SPECIES	2868									cirbpb (ENSCARG00000040077)	ENSCARG00000040070	CILP2 (ENSCARG00000040044)	si:ch211-212d10.2 (ENSCARG00000040003)	yjefn3 (ENSCARG00000039980)	tssk6 (ENSCARG00000039972)	gatad2ab (ENSCARG00000039832)	tmem161a (ENSCARG00000039783) ##22	ENSCARG00000039740 ##22	mef2b (ENSCARG00000039716)	ENSCARG00000039703	borcs8 (ENSCARG00000039647)	rfxank (ENSCARG00000039616)	nr2c2ap (ENSCARG00000039567)	ENSCARG00000060457
Cyprininae_a	ANCESTRAL SPECIES	383	ENSGT00940000161721.b	ENSGT00390000008060.a	ENSGT00940000156523.b.c.a	ENSGT00940000159142.cb	ENSGT00940000161332.g	ENSGT00390000009230.a.d	ENSGT00390000017576.a.a.a.a	ENSGT00510000049027.c.h.b	ENSGT00940000165622.a.a	ENSGT00910000144271.C.eb.a.b	ENSGT00390000018225.A	ENSGT00390000008152.B.a.f	ENSGT00390000007227.b.o.a	ENSGT00940000160464.f	ENSGT00390000004097.a.e.b	ENSGT00390000000672.a.a.e ##22	ENSGT00940000160699.a	ENSGT00940000165199.b	ENSGT00390000014856.k	ENSGT00940000160753.d	ENSGT00390000017748.d.a.a	ENSGT00940000158649.a.a.q.a	ENSGT00940000160926.b	ENSGT00390000012913.a.b.a
Common carp reference	MODERN SPECIES	5	POLRMT (ENSCCRG00000035513)	HCN2 (ENSCCRG00000075082)	bsg (ENSCCRG00000028399)	fstl3 (ENSCCRG00000068617)	CBARP (ENSCCRG00000017984)	atp5f1d (ENSCCRG00000028467)	midn (ENSCCRG00000066775)	cirbpb (ENSCCRG00000019981)	ENSCCRG00000019976	ENSCCRG00000065472	si:ch211-212d10.2 (ENSCCRG00000059416)	ENSCCRG00000012595	yjefn3 (ENSCCRG00000045172)	gatad2ab (ENSCCRG00000055646)	tssk6 (ENSCCRG00000067011)	tmem161a (ENSCCRG00000042075) ##22	mef2b (ENSCCRG00000042096)	borcs8 (ENSCCRG00000042037)	ENSCCRG00000042051	rfxank (ENSCCRG00000050476)	nr2c2ap (ENSCCRG00000043316)	NCAN (ENSCCRG00000043312)	hapln4 (ENSCCRG00000001787)	ENSCCRG00000032104	tm6sf2b (ENSCCRG00000001826)	tjp3 (ENSCCRG00000020675)	ENSCCRG00000061118	polr2eb (ENSCCRG00000021273)	gpx4a (ENSCCRG00000021315)	ENSCCRG00000040295	hnrnpm (ENSCCRG00000006562)
Golden-line barbel	MODERN SPECIES	513					fstl3 (ENSSGRG00000050598)	CBARP (ENSSGRG00000050597)	atp5f1d (ENSSGRG00000050594)	midn (ENSSGRG00000050592)	cirbpb (ENSSGRG00000050590)	ENSSGRG00000050589	ENSSGRG00000050588	CILP2 (ENSSGRG00000050585)	yjefn3 (ENSSGRG00000050584)	tssk6 (ENSSGRG00000050583)	gatad2ab (ENSSGRG00000050575)	tmem161a (ENSSGRG00000050402) ##22	mef2b (ENSSGRG00000050394)	ENSSGRG00000050393	borcs8 (ENSSGRG00000050392)	rfxank (ENSSGRG00000050391)	nr2c2ap (ENSSGRG00000050390)	NCAN (ENSSGRG00000050316)	hapln4 (ENSSGRG00000050311)	tm6sf2b (ENSSGRG00000050310)
Cyprininae	ANCESTRAL SPECIES	275	ENSGT00390000008060.b	ENSGT00940000156523.b.c.b	ENSGT00940000159142.bb	ENSGT00940000161332.h	ENSGT00390000009230.a.c	ENSGT00390000017576.a.a.b	ENSGT00510000049027.c.h.a	ENSGT00940000165622.a.b	ENSGT01030000234551.i	ENSGT00910000144271.C.eb.a.a.a	ENSGT00910000144271.C.eb.a.a.b	ENSGT00390000008152.B.a.e	ENSGT00390000007227.b.o.b	ENSGT00940000160464.e	ENSGT00390000004097.a.e.a	ENSGT00390000000672.a.a.f ##22	ENSGT00940000160699.b	ENSGT00940000165199.a	ENSGT00390000014856.l	ENSGT00940000160753.c	ENSGT00390000017748.c	ENSGT00940000158649.a.a.q.b.b	ENSGT00940000158649.a.a.q.b.a.a	ENSGT00940000160926.a	ENSGT00390000012913.a.b.b	ENSGT00940000159946.g.a	ENSGT00940000160036.c	ENSGT00950000183110.b.a.c.a	ENSGT00390000013841.hb.a	ENSGT00980000198641.b	ENSGT00940000159258.d.f
Cyprininae_a	ANCESTRAL SPECIES	91	ENSGT00940000156523.b.c.b	ENSGT00940000159142.bb	ENSGT00940000161332.h	ENSGT00390000009230.a.c	ENSGT00390000017576.a.a.a.b	ENSGT00510000049027.c.h.a	ENSGT00940000165622.a.b	ENSGT01030000234551.i	ENSGT00910000144271.C.eb.a.a.a	ENSGT00910000144271.C.eb.a.a.b	ENSGT00990000210509	ENSGT00390000008152.B.a.e	ENSGT00390000007227.b.o.b	ENSGT00940000160464.e	ENSGT00390000004097.a.e.a	ENSGT00390000000672.a.a.f ##22	ENSGT00940000160699.b	ENSGT00940000165199.a	ENSGT00390000014856.l	ENSGT00940000160753.c	ENSGT00390000017748.c	ENSGT00940000158649.a.a.q.b.b	ENSGT00940000158649.a.a.q.b.a.a	ENSGT00940000160926.a	ENSGT00390000012913.a.b.b	ENSGT00940000159946.g.a	ENSGT00940000160036.c	ENSGT00950000183110.b.a.c.a	ENSGT00390000013841.hb.a	ENSGT00940000165680.A	ENSGT00980000198641.b
Golden-line barbel	MODERN SPECIES	266				ENSSGRG00000029925	midn (ENSSGRG00000029924)	cirbpb (ENSSGRG00000029923)	ENSSGRG00000029922	ENSSGRG00000029921	ENSSGRG00000029919	ENSSGRG00000029917	ENSSGRG00000029916	CILP2 (ENSSGRG00000029915)	yjefn3 (ENSSGRG00000029914)	tssk6 (ENSSGRG00000029913)	gatad2ab (ENSSGRG00000029895)	tmem161a (ENSSGRG00000029890) ##22	mef2b (ENSSGRG00000029888)	ENSSGRG00000029886	borcs8 (ENSSGRG00000029884)	rfxank (ENSSGRG00000029883)	nr2c2ap (ENSSGRG00000029882)	ENSSGRG00000029880	hapln4 (ENSSGRG00000029878)	tm6sf2b (ENSSGRG00000029854)	SBNO2 (ENSSGRG00000029852)	tjp3 (ENSSGRG00000029490)	polr2eb (ENSSGRG00000029455)	gpx4a (ENSSGRG00000029454)	PIP5K1C (ENSSGRG00000029403)	hnrnpm (ENSSGRG00000029399)	marchf2 (ENSSGRG00000029395)
Common carp reference	MODERN SPECIES	43	bsg (ENSCCRG00000060256)	fstl3 (ENSCCRG00000070166)	CBARP (ENSCCRG00000028447)	atp5f1d (ENSCCRG00000072915)	midn (ENSCCRG00000028484)	ENSCCRG00000077638	ENSCCRG00000047712	ENSCCRG00000042634	cirbpb (ENSCCRG00000054573)	ENSCCRG00000041770	ENSCCRG00000042629	CILP2 (ENSCCRG00000058705)	yjefn3 (ENSCCRG00000061476)	tssk6 (ENSCCRG00000042188)	gatad2ab (ENSCCRG00000042139)	tmem161a (ENSCCRG00000079330) ##22	mef2b (ENSCCRG00000074177)	borcs8 (ENSCCRG00000003861)	rfxank (ENSCCRG00000070940)	nr2c2ap (ENSCCRG00000003841)	NCAN (ENSCCRG00000056685)	hapln4 (ENSCCRG00000004276)	tm6sf2b (ENSCCRG00000004269)	ENSCCRG00000074076	tjp3 (ENSCCRG00000038766)	ENSCCRG00000062798	polr2eb (ENSCCRG00000040281)	ENSCCRG00000064766	ENSCCRG00000021333	hnrnpm (ENSCCRG00000075767)	marchf2 (ENSCCRG00000079083)
Goldfish	MODERN SPECIES	41	ENSCARG00000044582	micos13 (ENSCARG00000044575)	hsd11b1la (ENSCARG00000044558)	rgmd (ENSCARG00000044550)	ENSCARG00000044546	ENSCARG00000044486	cdc14ab (ENSCARG00000043968)	dbt (ENSCARG00000043806)	ENSCARG00000043761	lrrc39 (ENSCARG00000043734)	trmt13 (ENSCARG00000043677)	ENSCARG00000043657	cdc14ab (ENSCARG00000043636)	rtca (ENSCARG00000043448)	dbt (ENSCARG00000043417)	tmem161a (ENSCARG00000043077) ##22	mef2b (ENSCARG00000043053)	borcs8 (ENSCARG00000043032)	rfxank (ENSCARG00000043010)	nr2c2ap (ENSCARG00000042983)	NCAN (ENSCARG00000042792)	hapln4 (ENSCARG00000042763)	tm6sf2b (ENSCARG00000042742)	ENSCARG00000042732	SBNO2 (ENSCARG00000042168)	tjp3 (ENSCARG00000041750)	ARHGAP45 (ENSCARG00000041408)	polr2eb (ENSCARG00000041231)	gpx4a (ENSCARG00000041135)	PIP5K1C (ENSCARG00000040940)	hnrnpm (ENSCARG00000040632)
Zebrafish	MODERN SPECIES	14	POLRMT (ENSDARG00000101220)	HCN2 (ENSDARG00000061665)	bsg (ENSDARG00000019881)	fstl3 (ENSDARG00000025670)	CBARP (ENSDARG00000071325)	atp5f1d (ENSDARG00000019404)	midn (ENSDARG00000018524)	cirbpb (ENSDARG00000013351)	ENSDARG00000014623	ENSDARG00000112679	si:ch211-212d10.2 (ENSDARG00000071333)	CILP2 (ENSDARG00000013687)	yjefn3 (ENSDARG00000061692)	tssk6 (ENSDARG00000017994)	gatad2ab (ENSDARG00000006192)	tmem161a (ENSDARG00000012790) ##22	mef2b (ENSDARG00000093170)	ENSDARG00000086661	borcs8 (ENSDARG00000071339)	rfxank (ENSDARG00000016730)	nr2c2ap (ENSDARG00000056162)	NCAN (ENSDARG00000005783)	ENSDARG00000099201	hapln4 (ENSDARG00000018542)	tm6sf2b (ENSDARG00000029057)	SBNO2 (ENSDARG00000016188)	tjp3 (ENSDARG00000002909)	ENSDARG00000095174	ARHGAP45 (ENSDARG00000062049)	polr2eb (ENSDARG00000026183)	gpx4a (ENSDARG00000068478)
Spotted gar	MODERN SPECIES	657	SUGP1 (ENSLOCG00000005094)	stk11 (ENSLOCG00000005072)	CBARP (ENSLOCG00000005061)	midn (ENSLOCG00000005039)	ENSLOCG00000005031	ENSLOCG00000004997	si:ch211-212d10.2 (ENSLOCG00000004977)	CILP2 (ENSLOCG00000004969)	yjefn3 (ENSLOCG00000004954)	NDUFA13 (ENSLOCG00000004936)	tssk6 (ENSLOCG00000017633)	gatad2ab (ENSLOCG00000004919)	MAU2 (ENSLOCG00000004881)	ARMC6 (ENSLOCG00000004866)	slc25a42 (ENSLOCG00000004848)	tmem161a (ENSLOCG00000004829) ##22	mef2b (ENSLOCG00000004811)	ENSLOCG00000004796	borcs8 (ENSLOCG00000004779)	rfxank (ENSLOCG00000004761)	nr2c2ap (ENSLOCG00000004745)	NCAN (ENSLOCG00000004727)	hapln4 (ENSLOCG00000004701)	tm6sf2a (ENSLOCG00000004678)	sbno2a (ENSLOCG00000004643)	gpx4b (ENSLOCG00000004616)	polr2eb (ENSLOCG00000004599)	ARHGAP45 (ENSLOCG00000004582)	tjp3 (ENSLOCG00000004553)	PIP5K1C (ENSLOCG00000004517)	ENSLOCG00000004508
Reedfish	MODERN SPECIES	3	stk11 (ENSECRG00000013845)	CBARP (ENSECRG00000013916)	atp5f1d (ENSECRG00000013941)	midn (ENSECRG00000013954)	ENSECRG00000013974	ENSECRG00000013998	ENSECRG00000014047	si:ch211-212d10.2 (ENSECRG00000014163)	CILP2 (ENSECRG00000014240)	yjefn3 (ENSECRG00000014433)	NDUFA13 (ENSECRG00000014455)	gatad2ab (ENSECRG00000014488)	MAU2 (ENSECRG00000014583)	ARMC6 (ENSECRG00000014771)	slc25a42 (ENSECRG00000014797)	tmem161a (ENSECRG00000014818) ##22	ENSECRG00000014876	ENSECRG00000014943	borcs8 (ENSECRG00000014978)	rfxank (ENSECRG00000015022)	nr2c2ap (ENSECRG00000015077)	NCAN (ENSECRG00000015130)	hapln4 (ENSECRG00000015191)	tm6sf2b (ENSECRG00000014412)	sbno2a (ENSECRG00000014480)	gpx4b (ENSECRG00000014579)	polr2eb (ENSECRG00000014616)	ARHGAP45 (ENSECRG00000014666)	tjp3 (ENSECRG00000014758)	PIP5K1C (ENSECRG00000014872)	mrpl54 (ENSECRG00000014938)
Elephant shark	MODERN SPECIES	1549	b3gnt3.4 (ENSCMIG00000004804)	ENSCMIG00000004806	ENSCMIG00000004808	ENSCMIG00000004883	slc5a5 (ENSCMIG00000005080)	nr2f6a (ENSCMIG00000005086)	hapln4 (ENSCMIG00000005087)	ENSCMIG00000005091	nr2c2ap (ENSCMIG00000005100)	rfxank (ENSCMIG00000005104)	ENSCMIG00000005109	ABHD8 (ENSCMIG00000005112)	MRPL34 (ENSCMIG00000005115)	borcs8 (ENSCMIG00000005120)	MEF2B (ENSCMIG00000005124)	tmem161a (ENSCMIG00000005129) ##22	slc25a42 (ENSCMIG00000005133)	ARMC6 (ENSCMIG00000005140)	tssk6 (ENSCMIG00000005144)	tssk6 (ENSCMIG00000005146)	gatad2ab (ENSCMIG00000005152)	MAU2 (ENSCMIG00000005190)	NDUFA13 (ENSCMIG00000005285)	yjefn3 (ENSCMIG00000005291)	CILP2 (ENSCMIG00000005302)	zgc:77929 (ENSCMIG00000005324)	pgpep1 (ENSCMIG00000005328)	mfsd14a2 (ENSCMIG00000005427)	ENSCMIG00000005685	arrdc2 (ENSCMIG00000005694)	ENSCMIG00000005713
Vertebrata	ANCESTRAL SPECIES																	ENSGT00390000000672.b ##22
Gnathostomata	ANCESTRAL SPECIES																	ENSGT00390000000672.b ##22
Euteleostomi	ANCESTRAL SPECIES																	ENSGT00390000000672.b ##22
Actinopterygii	ANCESTRAL SPECIES																	ENSGT00390000000672.b ##22
Neopterygii	ANCESTRAL SPECIES																	ENSGT00390000000672.b ##22
Osteoglossocephalai	ANCESTRAL SPECIES																	ENSGT00390000000672.b ##22
Clupeocephala	ANCESTRAL SPECIES																	ENSGT00390000000672.b ##22
Euteleosteomorpha	ANCESTRAL SPECIES																	ENSGT00390000000672.b ##22
Acanthomorphata	ANCESTRAL SPECIES																	ENSGT00390000000672.b ##22
Euacanthomorphacea	ANCESTRAL SPECIES																	ENSGT00390000000672.b ##22
Percomorphaceae	ANCESTRAL SPECIES																	ENSGT00390000000672.b ##22
Percomorphaceae_B	ANCESTRAL SPECIES																	ENSGT00390000000672.b ##22
Percomorphaceae_C	ANCESTRAL SPECIES																	ENSGT00390000000672.b ##22
Percomorphaceae_D	ANCESTRAL SPECIES																	ENSGT00390000000672.b ##22
Carangaria	ANCESTRAL SPECIES																	ENSGT00390000000672.b ##22
Pleuronectoidei	ANCESTRAL SPECIES																	ENSGT00390000000672.b ##22
Tongue sole	MODERN SPECIES	397	ctsla (ENSCSEG00000012140)	ENSCSEG00000012137	ENSCSEG00000012130	ENSCSEG00000012125	ENSCSEG00000012084	ENSCSEG00000012067	ENSCSEG00000012058	araf (ENSCSEG00000012037)	zgc:64051 (ENSCSEG00000012032)	oclnb (ENSCSEG00000012015)	marveld2b (ENSCSEG00000012007)	ENSCSEG00000011994	ENSCSEG00000011990	ENSCSEG00000011980	ENSCSEG00000011972	ENSCSEG00000011966 ##22	tmem161b (ENSCSEG00000011961) #22	ENSCSEG00000011955	ENSCSEG00000011946	ENSCSEG00000011929	morc2 (ENSCSEG00000011888)	ENSCSEG00000011875	erap2 (ENSCSEG00000011850)	ENSCSEG00000011845	rgmb (ENSCSEG00000011842)	ENSCSEG00000011840	ENSCSEG00000011821	ENSCSEG00000011800	vcp (ENSCSEG00000011768)	ENSCSEG00000011763	ENSCSEG00000011759
Sarcopterygii	ANCESTRAL SPECIES																	ENSGT00390000000672.b ##22
Tetrapoda	ANCESTRAL SPECIES																	ENSGT00390000000672.b ##22
Amniota	ANCESTRAL SPECIES																	ENSGT00390000000672.b ##22
Sauria	ANCESTRAL SPECIES																	ENSGT00390000000672.b ##22
Archelosauria	ANCESTRAL SPECIES																	ENSGT00390000000672.b ##22
Archosauria	ANCESTRAL SPECIES																	ENSGT00390000000672.b ##22
Aves	ANCESTRAL SPECIES																	ENSGT00390000000672.b ##22
Neognathae	ANCESTRAL SPECIES																	ENSGT00390000000672.b ##22
Neognathae_b	ANCESTRAL SPECIES																	ENSGT00390000000672.b ##22
Passeriformes	ANCESTRAL SPECIES																	ENSGT00390000000672.b ##22
Passeriformes_d	ANCESTRAL SPECIES																	ENSGT00390000000672.b ##22
Passeriformes_g	ANCESTRAL SPECIES																	ENSGT00390000000672.b ##22
Passeroidea	ANCESTRAL SPECIES																	ENSGT00390000000672.b ##22
Common canary	MODERN SPECIES	122																ENSSCAG00000015475 ##22
Ciona	ANCESTRAL SPECIES	43															ENSGT00390000002211	ENSGT00390000000672 #22	ENSGT00660000097320	ENSGT00390000008060	ENSGT00940000158708	ENSGT00390000015171	ENSGT00940000164879	ENSGT00390000014290	ENSGT00940000171206
Ciona savignyi	MODERN SPECIES	208									ENSCSAVG00000000462	ENSCSAVG00000000461	ENSCSAVG00000000460	ENSCSAVG00000000459	ENSCSAVG00000000450	ENSCSAVG00000000449	ENSCSAVG00000000448	ENSCSAVG00000000446 #22	ENSCSAVG00000000444	ENSCSAVG00000000441	ENSCSAVG00000000440	ENSCSAVG00000000425	ENSCSAVG00000000424	ENSCSAVG00000000423	ENSCSAVG00000000421	ENSCSAVG00000000410	ENSCSAVG00000000408	ENSCSAVG00000000406	ENSCSAVG00000000391	ENSCSAVG00000000388	ENSCSAVG00000000360	ENSCSAVG00000000359	ENSCSAVG00000000358
Ciona intestinalis	MODERN SPECIES	133															ENSCING00000019652	ENSCING00000002135 #22	ENSCING00000019818	ENSCING00000020458	ENSCING00000002136	ENSCING00000024450	nachr (ENSCING00000002138)	ENSCING00000017916	ENSCING00000014677	ENSCING00000014676	ENSCING00000014671