Mus	ANCESTRAL SPECIES	13	ENSGT00940000159755 #8	ENSGT00940000156556 #9	ENSGT00940000163036 #10	ENSGT00940000157784 #11	ENSGT00390000007133.g.b #12	ENSGT00390000004601 #13	ENSGT00910000147904	ENSGT00390000007467 #14	ENSGT00390000016696 #15	ENSGT00950000182906.b.b #16	ENSGT00940000158694 #17	ENSGT00950000183204.a #18	ENSGT00940000158997 #19	ENSGT00730000111007.a.a #20	ENSGT00390000002188 #21	ENSGT00390000017724.a.b #22	ENSGT00940000156507 #23	ENSGT00950000183058.A.b #24	ENSGT00940000161500 #25	ENSGT00940000157596 #26	ENSGT00940000155717.i.b.a.a.b.b #27	ENSGT00940000155717.i.a #30	ENSGT00390000011053 #31	ENSGT00640000091497.a #32	ENSGT00940000154143.f #33	ENSGT01050000244950.a.a.a #34	ENSGT00940000158837 #35	ENSGT00940000154578.A.d #36	ENSGT00940000154311.a.b #37	ENSGT00940000159893	ENSGT01030000234625.D
Mus_A	ANCESTRAL SPECIES	18	ENSGT00940000159755 #8	ENSGT00940000156556 #9	ENSGT00940000163036 #10	ENSGT00940000157784 #11	ENSGT00390000007133.g.b #12	ENSGT00390000004601 #13	ENSGT00910000147904	ENSGT00390000007467 #14	ENSGT00390000016696.x #15	ENSGT00950000182906.b.b #16	ENSGT00940000158694 #17	ENSGT00950000183204.a #18	ENSGT00940000158997 #19	ENSGT00730000111007.a.a #20	ENSGT00390000002188 #21	ENSGT00390000017724.a.b #22	ENSGT00940000156507 #23	ENSGT00950000183058.A.b #24	ENSGT00940000161500 #25	ENSGT00940000157596 #26	ENSGT00940000155717.i.b.a.a.b.b #27	ENSGT00940000155717.i.a #30	ENSGT00390000011053 #31	ENSGT00640000091497.a #32	ENSGT00940000154143.f #33	ENSGT01050000244950.a.a.a #34	ENSGT00940000158837 #35	ENSGT00940000154578.A.d #36	ENSGT00940000154311.a.b #37	ENSGT00940000159893	ENSGT01030000234625.D
Mus_B	ANCESTRAL SPECIES	18	ENSGT00940000159755 #8	ENSGT00940000156556 #9	ENSGT00940000163036 #10	ENSGT00940000157784 #11	ENSGT00390000007133.g.b #12	ENSGT00390000004601 #13	ENSGT00910000147904	ENSGT00390000007467 #14	ENSGT00390000016696.x #15	ENSGT00950000182906.b.b #16	ENSGT00940000158694 #17	ENSGT00950000183204.a #18	ENSGT00940000158997 #19	ENSGT00730000111007.a.a #20	ENSGT00390000002188 #21	ENSGT00390000017724.a.b #22	ENSGT00940000156507 #23	ENSGT00950000183058.A.b #24	ENSGT00940000161500 #25	ENSGT00940000157596 #26	ENSGT00940000155717.i.b.a.a.b.b #27	ENSGT00940000155717.i.b.a.a.b.a #28	ENSGT00940000155717.i.a #30	ENSGT00390000011053 #31	ENSGT00640000091497.a #32	ENSGT00940000154143.f #33	ENSGT01050000244950.a.a.a #34	ENSGT00940000158837 #35	ENSGT00940000154578.A.d #36	ENSGT00940000154311.a.b #37	ENSGT00940000159893
Mus_C	ANCESTRAL SPECIES	12	ENSGT00940000156556 #9	ENSGT00940000163036 #10	ENSGT00940000157784 #11	ENSGT00390000007133.g.b #12	ENSGT00390000007133.h ##12	ENSGT00390000004601 #13	ENSGT00910000147904	ENSGT00390000007467 #14	ENSGT00390000016696.x #15	ENSGT00950000182906.b.b #16	ENSGT00940000158694 #17	ENSGT00950000183204.a #18	ENSGT00940000158997 #19	ENSGT00730000111007.a.a #20	ENSGT00390000002188 #21	ENSGT00390000017724.a.b #22	ENSGT00940000156507 #23	ENSGT00950000183058.A.b #24	ENSGT00940000161500 #25	ENSGT00940000157596 #26	ENSGT00940000155717.i.b.a.a.b.b #27	ENSGT00940000155717.i.b.a.a.b.a #28	ENSGT00940000155717.i.a #30	ENSGT00390000011053 #31	ENSGT00640000091497.a #32	ENSGT00940000154143.f #33	ENSGT01050000244950.a.a.a #34	ENSGT00940000158837 #35	ENSGT00940000154578.A.d #36	ENSGT00940000154311.a.b #37	ENSGT00940000159893
spretus	MODERN SPECIES	7	Gsk3b (MGP_SPRETEiJ_G0021635) #7	Gpr156 (MGP_SPRETEiJ_G0021634) #8	Lrrc58 (MGP_SPRETEiJ_G0021633) #9	Btnl12 (MGP_SPRETEiJ_G0021632) #10	Fstl1 (MGP_SPRETEiJ_G0021631) #11	Ndufb4 (MGP_SPRETEiJ_G0021630) #12	Hgd (MGP_SPRETEiJ_G0021629) #13	Rabl3 (MGP_SPRETEiJ_G0021628) #14	Gtf2e1 (MGP_SPRETEiJ_G0021627) #15	Stxbp5l (MGP_SPRETEiJ_G0021626) #16	Polq (MGP_SPRETEiJ_G0021625) #17	Fbxo40 (MGP_SPRETEiJ_G0021624) #18	Hcls1 (MGP_SPRETEiJ_G0021623) #19	Golgb1 (MGP_SPRETEiJ_G0021622) #20	Iqcb1 (MGP_SPRETEiJ_G0021621) #21	Eaf2 (MGP_SPRETEiJ_G0021620) #22	Slc15a2 (MGP_SPRETEiJ_G0021619) #23	Ildr1 (MGP_SPRETEiJ_G0021618) #24	Cd86 (MGP_SPRETEiJ_G0021617) #25	Casr (MGP_SPRETEiJ_G0021616) #26	Stfa3 (MGP_SPRETEiJ_G0021615) #27	MGP_SPRETEiJ_G0021613 #28	MGP_SPRETEiJ_G0021612 #29	MGP_SPRETEiJ_G0021611 #30	Ccdc58 (MGP_SPRETEiJ_G0021610) #31	Fam162a (MGP_SPRETEiJ_G0021609) #32	Wdr5b (MGP_SPRETEiJ_G0021608) #33	Kpna1 (MGP_SPRETEiJ_G0021607) #34	Parp9 (MGP_SPRETEiJ_G0021606) #35	Dtx3l (MGP_SPRETEiJ_G0021605) #36	Parp14 (MGP_SPRETEiJ_G0021604) #37
Steppe mouse	MODERN SPECIES	19	Fstl1 (ENSMSIG00000018393) #11	ENSMSIG00000018386	ENSMSIG00000018377 ##12	Hgd (ENSMSIG00000018328) #13	ENSMSIG00000018320	Rabl3 (ENSMSIG00000018289) #14	Gtf2e1 (ENSMSIG00000018274) #15	ENSMSIG00000018266	Stxbp5l (ENSMSIG00000017754) #16	ENSMSIG00000017745	Polq (ENSMSIG00000017530) #17	Fbxo40 (ENSMSIG00000017504) #18	Hcls1 (ENSMSIG00000017414) #19	Golgb1 (ENSMSIG00000017297) #20	Iqcb1 (ENSMSIG00000017244) #21	Eaf2 (ENSMSIG00000017229) #22	Slc15a2 (ENSMSIG00000017096) #23	Ildr1 (ENSMSIG00000017015) #24	Cd86 (ENSMSIG00000016983) #25	ENSMSIG00000016968	ENSMSIG00000016961	Casr (ENSMSIG00000016850) #26
Mouse	MODERN SPECIES	7	Gsk3b (ENSMUSG00000022812) #7	Gpr156 (ENSMUSG00000046961) #8	Lrrc58 (ENSMUSG00000034158) #9	Btnl12 (ENSMUSG00000108763) #10	Fstl1 (ENSMUSG00000022816) #11	Ndufb4 (ENSMUSG00000022820) #12	Hgd (ENSMUSG00000022821) #13	Rabl3 (ENSMUSG00000022827) #14	Gtf2e1 (ENSMUSG00000022828) #15	Stxbp5l (ENSMUSG00000022829) #16	Polq (ENSMUSG00000034206) #17	Fbxo40 (ENSMUSG00000047746) #18	Hcls1 (ENSMUSG00000022831) #19	Golgb1 (ENSMUSG00000034243) #20	Iqcb1 (ENSMUSG00000022837) #21	Eaf2 (ENSMUSG00000022838) #22	Slc15a2 (ENSMUSG00000022899) #23	Ildr1 (ENSMUSG00000022900) #24	Cd86 (ENSMUSG00000022901) #25	Casr (ENSMUSG00000051980) #26	Stfa3 (ENSMUSG00000054905) #27	Stfa2 (ENSMUSG00000022902) #28	Cstdc5 (ENSMUSG00000071561) ##27	Cstdc6 (ENSMUSG00000079594) ##27	Stfa1 (ENSMUSG00000071562) ##27	Csta2 (ENSMUSG00000095620) ##27	Csta3 (ENSMUSG00000094733) ##27	Cstdc4 (ENSMUSG00000079597) ##27	Stfa2l1 (ENSMUSG00000059657) #28	Csta1 (ENSMUSG00000034362) #30	Ccdc58 (ENSMUSG00000075229) #31
Ryukyu mouse	MODERN SPECIES	7	Gpr156 (MGP_CAROLIEiJ_G0020735) #8	MGP_CAROLIEiJ_G0020734 #9	MGP_CAROLIEiJ_G0020733 #9	Btnl12 (MGP_CAROLIEiJ_G0020732) #10	Fstl1 (MGP_CAROLIEiJ_G0020731) #11	Ndufb4 (MGP_CAROLIEiJ_G0020730) #12	Hgd (MGP_CAROLIEiJ_G0020729) #13	Rabl3 (MGP_CAROLIEiJ_G0020728) #14	MGP_CAROLIEiJ_G0020727 ##15	MGP_CAROLIEiJ_G0020726 #16	Polq (MGP_CAROLIEiJ_G0020725) #17	Fbxo40 (MGP_CAROLIEiJ_G0020724) #18	Hcls1 (MGP_CAROLIEiJ_G0020723) #19	Golgb1 (MGP_CAROLIEiJ_G0020722) #20	Iqcb1 (MGP_CAROLIEiJ_G0020721) #21	Eaf2 (MGP_CAROLIEiJ_G0020720) #22	Slc15a2 (MGP_CAROLIEiJ_G0020719) #23	Ildr1 (MGP_CAROLIEiJ_G0020718) #24	Cd86 (MGP_CAROLIEiJ_G0020717) #25	Casr (MGP_CAROLIEiJ_G0020716) #26	Stfa3 (MGP_CAROLIEiJ_G0020715) #27	MGP_CAROLIEiJ_G0020714	MGP_CAROLIEiJ_G0020713 #30	Ccdc58 (MGP_CAROLIEiJ_G0020712) #31	Fam162a (MGP_CAROLIEiJ_G0020711) #32	Wdr5b (MGP_CAROLIEiJ_G0020710) #33	Kpna1 (MGP_CAROLIEiJ_G0020709) #34	Parp9 (MGP_CAROLIEiJ_G0020708) #35	Dtx3l (MGP_CAROLIEiJ_G0020707) #36	Parp14 (MGP_CAROLIEiJ_G0020706) #37	Hspbap1 (MGP_CAROLIEiJ_G0020705)
Shrew mouse	MODERN SPECIES	3	Gsk3b (MGP_PahariEiJ_G0016436) #7	Gpr156 (MGP_PahariEiJ_G0016435) #8	Lrrc58 (MGP_PahariEiJ_G0016434) #9	Btnl12 (MGP_PahariEiJ_G0016433) #10	Fstl1 (MGP_PahariEiJ_G0016432) #11	Ndufb4 (MGP_PahariEiJ_G0016431) #12	Hgd (MGP_PahariEiJ_G0016430) #13	Rabl3 (MGP_PahariEiJ_G0016429) #14	Gtf2e1 (MGP_PahariEiJ_G0016428) #15	Stxbp5l (MGP_PahariEiJ_G0016427) #16	Polq (MGP_PahariEiJ_G0016426) #17	Fbxo40 (MGP_PahariEiJ_G0016425) #18	Hcls1 (MGP_PahariEiJ_G0016424) #19	Golgb1 (MGP_PahariEiJ_G0016423) #20	Iqcb1 (MGP_PahariEiJ_G0016422) #21	Eaf2 (MGP_PahariEiJ_G0016421) #22	Slc15a2 (MGP_PahariEiJ_G0016420) #23	Ildr1 (MGP_PahariEiJ_G0016419) #24	Cd86 (MGP_PahariEiJ_G0016418) #25	Casr (MGP_PahariEiJ_G0016417) #26	MGP_PahariEiJ_G0016416	Ccdc58 (MGP_PahariEiJ_G0016415) #31	Fam162a (MGP_PahariEiJ_G0016414) #32	Wdr5b (MGP_PahariEiJ_G0016413) #33	Kpna1 (MGP_PahariEiJ_G0016412) #34	MGP_PahariEiJ_G0016411 #35	Dtx3l (MGP_PahariEiJ_G0016410) #36	Parp14 (MGP_PahariEiJ_G0016409) #37	Hspbap1 (MGP_PahariEiJ_G0016408)	Slc49a4 (MGP_PahariEiJ_G0016407)	Sema5b (MGP_PahariEiJ_G0016406)