Murinae	ANCESTRAL SPECIES	7	ENSGT00530000063407.b	ENSGT00550000074792.a.b #7	ENSGT00940000156396 #8	ENSGT00940000159322 #9	ENSGT00510000047951 #10	ENSGT00940000154903 #12	ENSGT00530000063787.A #11	ENSGT00940000161316 #13	ENSGT00940000172454	ENSGT00940000156835 #14	ENSGT00950000183039.B.b.b #15	ENSGT00940000158048 #16	ENSGT00940000160813 #18	ENSGT00940000153139.B.b #20	ENSGT00940000160629 #21	ENSGT00940000153052.c.b.b.b.d.b.b #22	ENSGT00940000159553 #23	ENSGT00390000017300 #24	ENSGT00940000155898 #25	ENSGT00940000156818 #26	ENSGT00390000007501 #27	ENSGT00940000156641 #28	ENSGT00940000158396 #29	ENSGT00940000157079.a	ENSGT00940000159044	ENSGT00530000063113.C	ENSGT00940000156866	ENSGT00390000007125.b	ENSGT00390000014412	ENSGT00940000158996	ENSGT00390000005989.a
Mus	ANCESTRAL SPECIES	2	ENSGT00550000074792.a.b #7	ENSGT00940000156396 #8	ENSGT00940000159322 #9	ENSGT00510000047951 #10	ENSGT00940000154903 #12	ENSGT00530000063787.A #11	ENSGT00940000161316 #13	ENSGT00940000172454	ENSGT00940000156835 #14	ENSGT00950000183039.B.b.b #15	ENSGT00940000158048 #16	ENSGT00970000195169 #17	ENSGT00940000160813 #18	ENSGT00940000153139.B.b #20	ENSGT00940000160629 #21	ENSGT00940000153052.c.b.b.b.d.b.b #22	ENSGT00940000159553 #23	ENSGT00390000017300 #24	ENSGT00940000155898 #25	ENSGT00940000156818 #26	ENSGT00390000007501 #27	ENSGT00940000156641 #28	ENSGT00940000158396 #29	ENSGT00940000162598 #30	ENSGT00940000154590 #32	ENSGT00940000158623 #34	ENSGT00390000015916 #36	ENSGT00390000009825 #35	ENSGT00940000156278 #37	ENSGT00390000002628	ENSGT00510000049125
Mus_A	ANCESTRAL SPECIES	2	ENSGT00550000074792.a.b #7	ENSGT00940000156396 #8	ENSGT00940000159322 #9	ENSGT00510000047951 #10	ENSGT00940000154903 #12	ENSGT00530000063787.A #11	ENSGT00940000161316 #13	ENSGT00940000172454	ENSGT00940000156835 #14	ENSGT00950000183039.B.b.b #15	ENSGT00940000158048 #16	ENSGT00970000195169 #17	ENSGT00940000160813 #18	ENSGT00940000153139.B.b #20	ENSGT00940000160629 #21	ENSGT00940000153052.c.b.b.b.d.b.b #22	ENSGT00940000159553 #23	ENSGT00390000017300 #24	ENSGT00940000155898 #25	ENSGT00940000156818 #26	ENSGT00390000007501 #27	ENSGT00940000156641 #28	ENSGT00940000158396 #29	ENSGT00940000162598 #30	ENSGT00940000154590 #32	ENSGT00940000158623 #34	ENSGT00390000015916 #36	ENSGT00390000009825 #35	ENSGT00940000156278 #37	ENSGT00390000002628	ENSGT00510000049125
Ryukyu mouse	MODERN SPECIES	2	Fbll1 (MGP_CAROLIEiJ_G0016207) #7	Pank3 (MGP_CAROLIEiJ_G0016206) #8	Slit3 (MGP_CAROLIEiJ_G0016205) #9	Spdl1 (MGP_CAROLIEiJ_G0016204) #10	Insyn2b (MGP_CAROLIEiJ_G0016203) #11	Dock2 (MGP_CAROLIEiJ_G0016202) #12	Foxi1 (MGP_CAROLIEiJ_G0016201) #13	Lcp2 (MGP_CAROLIEiJ_G0016200) #14	Kcnmb1 (MGP_CAROLIEiJ_G0016199) #15	Kcnip1 (MGP_CAROLIEiJ_G0016198) #16	MGP_CAROLIEiJ_G0016197 #17	Gabrp (MGP_CAROLIEiJ_G0016196) #18	MGP_CAROLIEiJ_G0016195 #19	Ranbp17 (MGP_CAROLIEiJ_G0016194) #20	Tlx3 (MGP_CAROLIEiJ_G0016193) #21	Npm1 (MGP_CAROLIEiJ_G0016192) #22	Fgf18 (MGP_CAROLIEiJ_G0016191) #23	Smim23 (MGP_CAROLIEiJ_G0016190) #24	Fbxw11 (MGP_CAROLIEiJ_G0016189) #25	Stk10 (MGP_CAROLIEiJ_G0016188) #26	Efcab9 (MGP_CAROLIEiJ_G0016187) #27	Ubtd2 (MGP_CAROLIEiJ_G0016186) #28	Sh3pxd2b (MGP_CAROLIEiJ_G0016185) #29	MGP_CAROLIEiJ_G0016184 #30	MGP_CAROLIEiJ_G0016183 #31	MGP_CAROLIEiJ_G0016182 #32	MGP_CAROLIEiJ_G0016181 #33	MGP_CAROLIEiJ_G0016180 #34	Mpg (MGP_CAROLIEiJ_G0016179) #35	Nprl3 (MGP_CAROLIEiJ_G0016178) #36	Rhbdf1 (MGP_CAROLIEiJ_G0016177) #37
Mus_B	ANCESTRAL SPECIES	2	ENSGT00530000063407.b	ENSGT00550000074792.a.b #7	ENSGT00940000156396 #8	ENSGT00940000159322 #9	ENSGT00510000047951 #10	ENSGT00940000154903 #12	ENSGT00530000063787.A #11	ENSGT00940000161316 #13	ENSGT00940000172454	ENSGT00940000156835 #14	ENSGT00950000183039.B.b.b #15	ENSGT00940000158048 #16	ENSGT00940000160813 #18	ENSGT00940000153139.B.b #20	ENSGT00940000160629 #21	ENSGT00940000153052.c.b.b.b.d.b.b #22	ENSGT00940000159553 #23	ENSGT00390000017300 #24	ENSGT00940000155898 #25	ENSGT00940000156818 #26	ENSGT00390000007501 #27	ENSGT00940000156641 #28	ENSGT00940000158396 #29	ENSGT00940000162598.d #30	ENSGT00940000154590 #32	ENSGT00940000162598.c #30	ENSGT00940000158623 #34	ENSGT00390000015916 #36	ENSGT00390000009825 #35	ENSGT00940000156278 #37	ENSGT00390000002628
Mouse	MODERN SPECIES	2	Rars (ENSMUSG00000018848)	Fbll1 (ENSMUSG00000051062) #7	Pank3 (ENSMUSG00000018846) #8	Slit3 (ENSMUSG00000056427) #9	Spdl1 (ENSMUSG00000069910) #10	Insyn2b (ENSMUSG00000069911) #11	Dock2 (ENSMUSG00000020143) #12	Foxi1 (ENSMUSG00000047861) #13	Lcp2 (ENSMUSG00000002699) #14	4930469K13Rik (ENSMUSG00000085684)	Kcnmb1 (ENSMUSG00000020155) #15	Kcnip1 (ENSMUSG00000053519) #16	Gabrp (ENSMUSG00000020159) #18	Ranbp17 (ENSMUSG00000040594) #20	Tlx3 (ENSMUSG00000040610) #21	Npm1 (ENSMUSG00000057113) #22	Fgf18 (ENSMUSG00000057967) #23	Smim23 (ENSMUSG00000020270) #24	Fbxw11 (ENSMUSG00000020271) #25	Stk10 (ENSMUSG00000020272) #26	Efcab9 (ENSMUSG00000044056) #27	Ubtd2 (ENSMUSG00000044949) #28	Sh3pxd2b (ENSMUSG00000040711) #29	Hbq1a (ENSMUSG00000020295) #30	Hba-a2 (ENSMUSG00000069917) #32	Hbq1b (ENSMUSG00000073063) #30	Hba-a1 (ENSMUSG00000069919) #32	Hba-x (ENSMUSG00000055609) #34	Mpg (ENSMUSG00000020287) #35	Nprl3 (ENSMUSG00000020289) #36	Rhbdf1 (ENSMUSG00000020282) #37
Mus_C	ANCESTRAL SPECIES	3	ENSGT00550000074792.a.b #7	ENSGT00940000156396 #8	ENSGT00940000159322 #9	ENSGT00510000047951 #10	ENSGT00940000154903.k #12	ENSGT00530000063787.A #11	ENSGT00940000161316 #13	ENSGT00940000172454	ENSGT00940000156835 #14	ENSGT00950000183039.B.b.b #15	ENSGT00940000158048 #16	ENSGT01060000252083	ENSGT00940000160813 #18	ENSGT00940000153139.B.b #20	ENSGT00940000160629 #21	ENSGT00940000153052.c.b.b.b.d.b.b #22	ENSGT00940000159553 #23	ENSGT00390000017300 #24	ENSGT00940000155898 #25	ENSGT00940000156818 #26	ENSGT00390000007501 #27	ENSGT00940000156641 #28	ENSGT00940000158396 #29	ENSGT00940000162598.d #30	ENSGT00940000154590 #32	ENSGT00940000162598.c #30	ENSGT00940000158623 #34	ENSGT00390000015916 #36	ENSGT00390000009825 #35	ENSGT00940000156278 #37	ENSGT00390000002628
spretus	MODERN SPECIES	2	Fbll1 (MGP_SPRETEiJ_G0017048) #7	Pank3 (MGP_SPRETEiJ_G0017047) #8	Slit3 (MGP_SPRETEiJ_G0017046) #9	Spdl1 (MGP_SPRETEiJ_G0017045) #10	Insyn2b (MGP_SPRETEiJ_G0017044) #11	Dock2 (MGP_SPRETEiJ_G0017043) #12	Foxi1 (MGP_SPRETEiJ_G0017042) #13	Lcp2 (MGP_SPRETEiJ_G0017041) #14	Kcnmb1 (MGP_SPRETEiJ_G0017040) #15	Kcnip1 (MGP_SPRETEiJ_G0017039) #16	MGP_SPRETEiJ_G0017038	Gabrp (MGP_SPRETEiJ_G0017037) #18	MGP_SPRETEiJ_G0017036	MGP_SPRETEiJ_G0017035 #20	Tlx3 (MGP_SPRETEiJ_G0017034) #21	Npm1 (MGP_SPRETEiJ_G0017033) #22	Fgf18 (MGP_SPRETEiJ_G0017032) #23	Smim23 (MGP_SPRETEiJ_G0017031) #24	Fbxw11 (MGP_SPRETEiJ_G0017030) #25	Stk10 (MGP_SPRETEiJ_G0017029) #26	Efcab9 (MGP_SPRETEiJ_G0017028) #27	Ubtd2 (MGP_SPRETEiJ_G0017027) #28	Sh3pxd2b (MGP_SPRETEiJ_G0017026) #29	MGP_SPRETEiJ_G0017025 #34	Mpg (MGP_SPRETEiJ_G0017024) #35	Nprl3 (MGP_SPRETEiJ_G0017023) #36	Rhbdf1 (MGP_SPRETEiJ_G0017022) #37	MGP_SPRETEiJ_G0017021	Il9r (MGP_SPRETEiJ_G0017020)	MGP_SPRETEiJ_G0017019	Nsg2 (MGP_SPRETEiJ_G0017018)
Steppe mouse	MODERN SPECIES	3235				ENSMSIG00000022626 #12	Insyn2b (ENSMSIG00000022923) #11	Foxi1 (ENSMSIG00000022955) #13	4930469K13Rik (ENSMSIG00000022972)	ENSMSIG00000022989 #14	Kcnmb1 (ENSMSIG00000023135) #15	Kcnip1 (ENSMSIG00000023156) #16	ENSMSIG00000023232	Gabrp (ENSMSIG00000023250) #18	Ranbp17 (ENSMSIG00000023281) #20	ENSMSIG00000023419	Tlx3 (ENSMSIG00000023425) #21	Npm1 (ENSMSIG00000023445) #22	Fgf18 (ENSMSIG00000023572) #23	Smim23 (ENSMSIG00000023592) #24	Fbxw11 (ENSMSIG00000023614) #25	Stk10 (ENSMSIG00000023716) #26	Efcab9 (ENSMSIG00000023781) #27	Ubtd2 (ENSMSIG00000023792) #28	Sh3pxd2b (ENSMSIG00000023801) #29	Hbq1a (ENSMSIG00000023834) #30	ENSMSIG00000024204 #32	ENSMSIG00000024228 #30	Hba-x (ENSMSIG00000024240) #34	Nprl3 (ENSMSIG00000024256) #36	Mpg (ENSMSIG00000024316) #35	Rhbdf1 (ENSMSIG00000024323) #37	ENSMSIG00000024344
Rat	DUPLICATION
Rat	MODERN SPECIES	1	Fbll1 (ENSRNOG00000015303) #7	Pank3 (ENSRNOG00000007419) #8	Slit3 (ENSRNOG00000007377) #9	Spdl1 (ENSRNOG00000007292) #10	Insyn2b (ENSRNOG00000032329) #11	Dock2 (ENSRNOG00000006932) #12	Foxi1 (ENSRNOG00000006293) #13	C10H5orf58 (ENSRNOG00000068310)	Lcp2 (ENSRNOG00000005620) #14	Kcnmb1 (ENSRNOG00000005465) #15	AABR07029262.1 (ENSRNOG00000029706)	Kcnip1 (ENSRNOG00000005365) #16	Gabrp (ENSRNOG00000032417) #18	Ranbp17 (ENSRNOG00000005042) #20	Tlx3 (ENSRNOG00000004976) #21	Npm1 (ENSRNOG00000004616) #22	Fgf18 (ENSRNOG00000048389) #23	Smim23 (ENSRNOG00000027196) #24	Fbxw11 (ENSRNOG00000004395) #25	ENSRNOG00000066039	Stk10 (ENSRNOG00000004217) #26	Efcab9 (ENSRNOG00000004142) #27	Ubtd2 (ENSRNOG00000004137) #28	Sh3pxd2b (ENSRNOG00000004063) #29	Neurl1b (ENSRNOG00000027606)	ENSRNOG00000069024	Ergic1 (ENSRNOG00000003508)	Atp6v0e1 (ENSRNOG00000003269)	Crebrf (ENSRNOG00000020769)	Bnip1 (ENSRNOG00000020753)	Nkx2-5 (ENSRNOG00000020747)
Rat	MODERN SPECIES	46	ENSRNOG00000067513	RGD1566184 (ENSRNOG00000057692)	Tesl (ENSRNOG00000033628)	ENSRNOG00000063057	Wdr44 (ENSRNOG00000029068)	Klhl13 (ENSRNOG00000014029)	Sec61g-ps4 (ENSRNOG00000061620)	AABR07041140.1 (ENSRNOG00000006459)	Ppp1r2-ps2 (ENSRNOG00000064591)	ENSRNOG00000068085	Slc6a14 (ENSRNOG00000005687)	Agtr2 (ENSRNOG00000050006)	AABR07041109.1 (ENSRNOG00000050465)	ENSRNOG00000067242	Pls3 (ENSRNOG00000027520)	AABR07041089.1 (ENSRNOG00000018923) #22	Luzp4 (ENSRNOG00000069107)	Lrch2 (ENSRNOG00000029582)	Il13ra2 (ENSRNOG00000032973)	Htr2c (ENSRNOG00000030877)	ENSRNOG00000065464	ENSRNOG00000065631	Amot (ENSRNOG00000007345)	Lhfpl1 (ENSRNOG00000027601)	Rtl4 (ENSRNOG00000031638)	Trpc5os (ENSRNOG00000064383)	Trpc5 (ENSRNOG00000027233)	LOC108349244 (ENSRNOG00000005753)	Alg13 (ENSRNOG00000065758)	LOC100361854 (ENSRNOG00000029512)	LOC100361756 (ENSRNOG00000051310)