Hystricomorpha_a	ANCESTRAL SPECIES	14	ENSGT00940000158408	ENSGT00730000110915.b	ENSGT01100000263570.B	ENSGT00940000159402	ENSGT00940000160493	ENSGT00940000159284	ENSGT00950000183190.a.a.b	ENSGT00940000156349	ENSGT00940000155030	ENSGT00940000161011 #15	ENSGT00390000006096.a.a #16	ENSGT00940000155863 #17	ENSGT00820000127150 #18	ENSGT00940000155444 #19	ENSGT00390000018717.b.a.b #21	ENSGT00940000153724.A.i #22	ENSGT00940000159013 #23	ENSGT00390000013693 #24	ENSGT00940000153859.a #25	ENSGT00940000156336 #26	ENSGT00940000158856 #28	ENSGT00940000157498 #29	ENSGT00940000157300 #30	ENSGT00940000154334.k #31	ENSGT00940000167338 #32	ENSGT00940000164746	ENSGT00940000161722 #33	ENSGT00940000158367 #34	ENSGT01030000234540.E #35	ENSGT00940000155177.b #36	ENSGT00940000154840.b #37
Hystricomorpha_b	ANCESTRAL SPECIES	6	ENSGT00730000110915.b	ENSGT01100000263570.B	ENSGT00940000159402	ENSGT00940000160493	ENSGT00940000159284	ENSGT00950000183190.a.a.b	ENSGT00940000156349	ENSGT00940000155030	ENSGT00940000161011 #15	ENSGT00390000006096.a.a #16	ENSGT00940000155863 #17	ENSGT00820000127150 #18	ENSGT00940000155444.g.a #19	ENSGT00940000155444.h ##19	ENSGT00390000018717.b.a.b #21	ENSGT00940000153724.A.i #22	ENSGT00940000159013 #23	ENSGT00390000013693 #24	ENSGT00940000153859.a #25	ENSGT00940000156336 #26	ENSGT00940000158856 #28	ENSGT00940000157498 #29	ENSGT00940000157300 #30	ENSGT00940000154334.k #31	ENSGT00940000167338 #32	ENSGT00940000161722 #33	ENSGT00940000158367 #34	ENSGT01030000234540.E #35	ENSGT00940000155177.b #36	ENSGT00940000154840.b #37	ENSGT01050000244827.B
Long-tailed chinchilla	MODERN SPECIES	142									REG4 (ENSCLAG00000007386) #15	HMGCS2 (ENSCLAG00000006432) #16	PHGDH (ENSCLAG00000005972) #17	ZNF697 (ENSCLAG00000016771) #18	ENSCLAG00000009086 #19	ENSCLAG00000008815 #20	HAO2 (ENSCLAG00000005779) #21	WARS2 (ENSCLAG00000004926) #22	TBX15 (ENSCLAG00000008292) #23	SPAG17 (ENSCLAG00000006388) #24	WDR3 (ENSCLAG00000010657) #25	GDAP2 (ENSCLAG00000008843) #26	ENSCLAG00000007247 #27	TENT5C (ENSCLAG00000006985) #28	MAN1A2 (ENSCLAG00000008573) #29	VTCN1 (ENSCLAG00000014982) #30	TRIM45 (ENSCLAG00000010898) #31	ENSCLAG00000014230 #32	CD101 (ENSCLAG00000010019) #33	PTGFRN (ENSCLAG00000008229) #34	CD2 (ENSCLAG00000007838) #35	IGSF3 (ENSCLAG00000006923) #36	ATP1A1 (ENSCLAG00000005733) #37
Degu	MODERN SPECIES	298	NOTCH2 (ENSODEG00000000797)	ENSODEG00000000653	ENSODEG00000000642	REG4 (ENSODEG00000000629) #15	HMGCS2 (ENSODEG00000000553) #16	PHGDH (ENSODEG00000001506) #17	ZNF697 (ENSODEG00000001481) #18	ENSODEG00000001464 #19	ENSODEG00000018670	ENSODEG00000001448 ##19	ENSODEG00000001440 ##19	HAO2 (ENSODEG00000001256) #21	ENSODEG00000001240	ENSODEG00000001230	ENSODEG00000018671	WARS2 (ENSODEG00000001212) #22	TBX15 (ENSODEG00000001193) #23
Guinea pig	MODERN SPECIES	2	BCL9 (ENSCPOG00000012202)	ENSCPOG00000022795	CHD1L (ENSCPOG00000009000)	Fmo5 (ENSCPOG00000013868)	PRKAB2 (ENSCPOG00000033400)	ENSCPOG00000007934	SEC22B (ENSCPOG00000031768)	NOTCH2 (ENSCPOG00000015738)	REG4 (ENSCPOG00000025637) #15	HMGCS2 (ENSCPOG00000006339) #16	PHGDH (ENSCPOG00000006732) #17	ZNF697 (ENSCPOG00000033846) #18	ENSCPOG00000008386 #19	ENSCPOG00000033437 #19	ENSCPOG00000001451 #19	WARS2 (ENSCPOG00000000616) #22	TBX15 (ENSCPOG00000000615) #23	SPAG17 (ENSCPOG00000011317) #24	WDR3 (ENSCPOG00000011305) #25	GDAP2 (ENSCPOG00000012599) #26	TENT5C (ENSCPOG00000035573) #28	MAN1A2 (ENSCPOG00000004935) #29	VTCN1 (ENSCPOG00000034001) #30	ENSCPOG00000000605	CD101 (ENSCPOG00000015741) #33	PTGFRN (ENSCPOG00000015740) #34	CD2 (ENSCPOG00000036418) #35	IGSF3 (ENSCPOG00000002029) #36	ATP1A1 (ENSCPOG00000000927) #37	MAB21L3 (ENSCPOG00000009511)	SLC22A15 (ENSCPOG00000009506)