Chordata	DUPLICATION
Chordata	ANCESTRAL SPECIES																	ENSGT00390000018003.b #22
Vertebrata	ANCESTRAL SPECIES																	ENSGT00390000018003.b #22
Gnathostomata	ANCESTRAL SPECIES	363											ENSGT00390000016813	ENSGT00940000158600	ENSGT00940000159389	ENSGT00940000158037	ENSGT00940000158187	ENSGT00390000018003.b #22	ENSGT00390000008702 #24	ENSGT00390000014557 #25	ENSGT00940000153544.b #28
Euteleostomi	ANCESTRAL SPECIES	49	ENSGT00390000010777	ENSGT00390000014084	ENSGT01030000234578.B.a	ENSGT00390000006747	ENSGT00950000183117.a.a	ENSGT00940000158254	ENSGT00940000155067.b	ENSGT00940000155067.a	ENSGT00940000155118	ENSGT00390000016813	ENSGT00940000155166.A	ENSGT00940000158600	ENSGT00940000159389	ENSGT00940000158037	ENSGT00940000158187	ENSGT00390000018003.b #22	ENSGT00390000008702 #24	ENSGT00390000014557 #25	ENSGT00940000153544.b #28	ENSGT00940000160423 #29	ENSGT00940000158677	ENSGT00940000166645	ENSGT00940000158899	ENSGT00390000005178 #32	ENSGT00940000153962.b	ENSGT00530000063825.A.c	ENSGT00950000183132.A	ENSGT01050000244879.b.a.b.a	ENSGT00390000014700.a	ENSGT00940000165765	ENSGT00390000013899.a.a
Sarcopterygii	ANCESTRAL SPECIES	12																ENSGT00390000018003.b #22	ENSGT00390000008702 #24	ENSGT00390000014557 #25	ENSGT00940000153544.b #28	ENSGT00940000160423 #29	ENSGT00940000158677	ENSGT00940000166645	ENSGT00940000158899	ENSGT00390000005178 #32	ENSGT00940000153962.b	ENSGT00530000063825.A.c	ENSGT00950000183132.A	ENSGT01050000244879.b.a.b.a	ENSGT00390000014700.a	ENSGT00940000165765	ENSGT00390000013899.a.a
Tetrapoda	ANCESTRAL SPECIES	22	ENSGT00940000163137	ENSGT01030000234535.D	ENSGT00390000000212	ENSGT00950000182939.b.a.b	ENSGT00940000156122	ENSGT00390000009532.A.d.a	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00910000144343	ENSGT00950000182839.B.a.a #15	ENSGT00940000161014 #16	ENSGT00390000007747 #17	ENSGT00940000156039 #20	ENSGT00390000002793 #21	ENSGT00390000018003.b #22	ENSGT00390000008702 #24	ENSGT00390000014557 #25	ENSGT00940000153544.b #28	ENSGT00940000160423 #29	ENSGT00940000158677	ENSGT00940000166645	ENSGT00940000158899	ENSGT00390000005178 #32	ENSGT00940000153962.b	ENSGT00530000063825.A.c	ENSGT00510000047981.c	ENSGT00940000158466	ENSGT00950000182973.a.c.b	ENSGT00940000156720	ENSGT00390000013715
Amniota	ANCESTRAL SPECIES	49	ENSGT00390000000212	ENSGT00950000182939.b.a.b	ENSGT00940000156122	ENSGT00390000009532.A.d.a	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182839.B.a.a #15	ENSGT00940000161014 #16	ENSGT00390000007747 #17	ENSGT00940000156039 #20	ENSGT00940000167397.b	ENSGT00390000002793 #21	ENSGT00390000018003.b #22	ENSGT00390000008702 #24	ENSGT00390000014557 #25	ENSGT00940000153544.b #28	ENSGT00940000160423 #29	ENSGT00940000169031	ENSGT01050000244951.a.a #31	ENSGT00390000005178 #32
Mammalia	ANCESTRAL SPECIES	70	ENSGT00950000182939.b.a.b	ENSGT00940000156122	ENSGT00390000009532.A.d.a	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182839.B.a.a #15	ENSGT00940000161014 #16	ENSGT00390000007747 #17	ENSGT00940000156039 #20	ENSGT00940000167397.b	ENSGT00390000002793 #21	ENSGT00970000193562	ENSGT00390000018003.b #22	ENSGT00390000008702 #24	ENSGT00390000014557 #25	ENSGT00940000153544.b #28	ENSGT00940000160423 #29	ENSGT00940000169031	ENSGT01050000244951.a.a #31	ENSGT00390000005178 #32
Theria	ANCESTRAL SPECIES	2	ENSGT00390000000212	ENSGT00950000182939.b.a.b	ENSGT00940000156122	ENSGT00390000009532.A.d.a	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182839.B.a.a #15	ENSGT00940000161014 #16	ENSGT00390000007747 #17	ENSGT00940000156039 #20	ENSGT00940000167397.b	ENSGT00390000002793 #21	ENSGT00390000018003.b #22	ENSGT00970000193562	ENSGT00390000008702 #24	ENSGT00390000014557 #25	ENSGT00940000153544.b #28	ENSGT00940000160423 #29	ENSGT00940000169031	ENSGT00940000153380.A #30	ENSGT00390000018322 #26	ENSGT01050000244951.a.a #31	ENSGT00390000005178 #32	ENSGT00390000003443 #33	ENSGT00940000153377.C #34	ENSGT00940000160124 #35	ENSGT00390000004933 #36	ENSGT00390000015899 #37
Eutheria	ANCESTRAL SPECIES	1	ENSGT00390000000212	ENSGT00950000182939.b.a.b	ENSGT00940000156122	ENSGT00390000009532.A.d.a	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182839.B.a.a #15	ENSGT00940000161014 #16	ENSGT00390000007747 #17	ENSGT00940000156039 #20	ENSGT00940000167397.b	ENSGT00390000002793 #21	ENSGT00390000018003.b #22	ENSGT00970000193562	ENSGT00390000008702 #24	ENSGT00390000014557 #25	ENSGT00940000153544.b #28	ENSGT00940000160423 #29	ENSGT00940000153380.A #30	ENSGT00390000018322 #26	ENSGT01050000244951.a.a #31	ENSGT00390000005178 #32	ENSGT00390000003443 #33	ENSGT00940000153377.C #34	ENSGT00940000160124 #35	ENSGT00390000004933 #36	ENSGT00390000015899 #37	ENSGT00390000006367.c
Boreoeutheria	ANCESTRAL SPECIES	6	ENSGT00390000000212	ENSGT00950000182939.b.a.b	ENSGT00940000156122	ENSGT00390000009532.A.d.a	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182839.B.a.a #15	ENSGT00940000161014 #16	ENSGT00390000007747 #17	ENSGT00940000156039 #20	ENSGT00940000167397.b	ENSGT00390000002793 #21	ENSGT00390000018003.b #22	ENSGT00970000193562	ENSGT00390000008702 #24	ENSGT00390000014557 #25	ENSGT00940000153544.b #28	ENSGT00940000160423 #29	ENSGT00940000153380.A #30	ENSGT00390000018322 #26	ENSGT01050000244951.a.a #31	ENSGT00390000005178 #32	ENSGT00390000003443 #33	ENSGT00940000153377.C #34	ENSGT00940000160124 #35	ENSGT00390000004933 #36	ENSGT00390000015899 #37	ENSGT00390000006367.c
Euarchontoglires	ANCESTRAL SPECIES	6	ENSGT01030000234535.D	ENSGT00390000000212	ENSGT00950000182939.b.a.b	ENSGT00940000156122	ENSGT00390000009532.A.d.a	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182839.B.a.a #15	ENSGT00940000161014 #16	ENSGT00390000007747 #17	ENSGT00940000156039 #20	ENSGT00390000002793 #21	ENSGT00390000018003.b #22	ENSGT00970000193562	ENSGT00390000008702 #24	ENSGT00390000014557 #25	ENSGT00940000153544.b #28	ENSGT00940000160423 #29	ENSGT00940000153380.A #30	ENSGT00390000018322 #26	ENSGT01050000244951.a.a #31	ENSGT00390000005178 #32	ENSGT00390000003443 #33	ENSGT00940000153377.C #34	ENSGT00940000160124 #35	ENSGT00390000004933 #36	ENSGT00390000015899 #37	ENSGT00390000006367.c
Primates	ANCESTRAL SPECIES	6	ENSGT00390000000212	ENSGT00950000182939.b.a.b	ENSGT00940000156122	ENSGT00390000009532.A.d.a	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182839.B.a.a #15	ENSGT00940000161014 #16	ENSGT00390000007747 #17	ENSGT00940000156039 #20	ENSGT00390000002793 #21	ENSGT00970000193562	ENSGT00390000018003.b #22	ENSGT00390000008702 #24	ENSGT00390000014557 #25	ENSGT00940000153544.b #28	ENSGT00940000160423 #29	ENSGT00940000153380.A #30	ENSGT00390000018322 #26	ENSGT01050000244951.a.a #31	ENSGT00390000005178 #32	ENSGT00390000003443 #33	ENSGT00940000153377.C #34	ENSGT00940000160124 #35	ENSGT00390000004933 #36	ENSGT00390000015899 #37	ENSGT00390000006367.c	ENSGT00530000063113.A
Haplorrhini	ANCESTRAL SPECIES	3	ENSGT01030000234535.D	ENSGT00390000000212	ENSGT00950000182939.b.a.b	ENSGT00940000156122	ENSGT00390000009532.A.d.a	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182839.B.a.a #15	ENSGT00940000161014 #16	ENSGT00390000007747 #17	ENSGT00940000156039 #20	ENSGT00390000002793 #21	ENSGT00390000018003.b #22	ENSGT00970000193562	ENSGT00390000008702 #24	ENSGT00390000014557 #25	ENSGT00940000153544.b #28	ENSGT00940000160423 #29	ENSGT00940000153380.A #30	ENSGT00390000018322 #26	ENSGT01050000244951.a.a #31	ENSGT00390000005178 #32	ENSGT00390000003443 #33	ENSGT00940000153377.C #34	ENSGT00940000160124 #35	ENSGT00390000004933 #36	ENSGT00390000015899 #37	ENSGT00390000006367.c
Simiiformes	ANCESTRAL SPECIES	4	ENSGT00390000000212	ENSGT00950000182939.b.a.b	ENSGT00940000156122	ENSGT00390000009532.A.d.a	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182839.B.a.a #15	ENSGT00940000161014 #16	ENSGT00390000007747 #17	ENSGT00910000147260 #18	ENSGT00940000156039 #20	ENSGT00390000002793 #21	ENSGT00390000018003.b #22	ENSGT00970000193562	ENSGT00390000008702 #24	ENSGT00390000014557 #25	ENSGT00940000153544.b #28	ENSGT00940000160423 #29	ENSGT01100000266953	ENSGT00940000153380.A #30	ENSGT00390000018322 #26	ENSGT01050000244951.a.a #31	ENSGT00390000005178 #32	ENSGT00390000003443 #33	ENSGT00940000153377.C #34	ENSGT00940000160124 #35	ENSGT00390000004933 #36	ENSGT00390000015899 #37
Catarrhini	ANCESTRAL SPECIES	4	ENSGT00500000044955.j.b	ENSGT00390000009532.A.d.a	ENSGT00560000078473	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810.e	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182839.B.a.a #15	ENSGT00940000161014 #16	ENSGT00390000007747 #17	ENSGT00910000147260 #18	ENSGT00940000156039 #20	ENSGT00390000002793 #21	ENSGT00970000193562	ENSGT00390000018003.b #22	ENSGT00390000008702 #24	ENSGT00390000014557 #25	ENSGT00390000018322 #26	ENSGT00940000153544.b #28	ENSGT00940000160423 #29	ENSGT01100000266953	ENSGT00940000153380.A #30	ENSGT01050000244951.a.a #31	ENSGT00390000005178 #32	ENSGT00390000003443 #33	ENSGT00940000153377.C #34	ENSGT00940000160124 #35	ENSGT00390000004933 #36	ENSGT00390000015899 #37	ENSGT00390000006367.c
Cercopithecidae	DUPLICATION
Cercopithecidae	ANCESTRAL SPECIES	3	ENSGT00940000156122.g	ENSGT00500000044955.j.b	ENSGT00390000009532.A.d.a	ENSGT00560000078473	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810.e	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182839.B.a.a #15	ENSGT00940000161014 #16	ENSGT00390000007747 #17	ENSGT00910000147260 #18	ENSGT00940000156039 #20	ENSGT00390000002793 #21	ENSGT00390000018003.b.s #22	ENSGT01100000263940 #23	ENSGT00390000008702 #24	ENSGT00390000014557 #25	ENSGT00390000018322 #26	ENSGT00940000153544.b #28	ENSGT00940000160423 #29	ENSGT01100000266953	ENSGT00940000153380.A #30	ENSGT01050000244951.a.a #31	ENSGT00390000005178 #32	ENSGT00390000003443 #33	ENSGT00940000153377.C #34	ENSGT00940000160124 #35	ENSGT00390000004933 #36	ENSGT00390000015899 #37
Cercopithecinae	ANCESTRAL SPECIES	7	ENSGT00940000156122.g	ENSGT00500000044955.j.b	ENSGT00390000009532.A.d.a	ENSGT00560000078473	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810.e	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182839.B.a.a #15	ENSGT00940000161014 #16	ENSGT00390000007747 #17	ENSGT00910000147260 #18	ENSGT00940000156039 #20	ENSGT00390000002793 #21	ENSGT00390000018003.b.s #22	ENSGT01100000263940 #23	ENSGT00390000008702 #24	ENSGT00390000014557 #25	ENSGT00390000018322 #26	ENSGT00940000153544.b #28	ENSGT00940000160423 #29	ENSGT01100000266953	ENSGT00940000153380.A #30	ENSGT01050000244951.a.a #31	ENSGT00390000005178 #32	ENSGT00390000003443 #33	ENSGT00940000153377.C #34	ENSGT00940000160124 #35	ENSGT00390000004933 #36	ENSGT00390000015899 #37
Cercopithecinae_a	ANCESTRAL SPECIES	7	ENSGT00950000182939.b.a.b	ENSGT00940000156122.g	ENSGT00500000044955.j.b	ENSGT00390000009532.A.d.a	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810.e	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182839.B.a.a #15	ENSGT00940000161014 #16	ENSGT00390000007747 #17	ENSGT00910000147260 #18	ENSGT00940000156039 #20	ENSGT00390000002793 #21	ENSGT00390000018003.b.s #22	ENSGT01100000263940 #23	ENSGT00390000008702 #24	ENSGT00390000014557 #25	ENSGT00390000018322 #26	ENSGT00940000153544.b #28	ENSGT00940000160423 #29	ENSGT01100000266953	ENSGT00940000153380.A #30	ENSGT01050000244951.a.a #31	ENSGT00390000005178 #32	ENSGT00390000003443 #33	ENSGT00940000153377.C #34	ENSGT00940000160124 #35	ENSGT00390000004933 #36	ENSGT00390000015899 #37
Cercopithecinae_b	ANCESTRAL SPECIES	2	ENSGT00940000156122.g	ENSGT00500000044955.j.b	ENSGT00390000009532.A.d.a	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810.e	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182839.B.a.a #15	ENSGT00940000161014 #16	ENSGT00390000007747 #17	ENSGT00910000147260 #18	ENSGT00940000156039 #20	ENSGT00390000002793 #21	ENSGT01100000263940 #23	ENSGT00390000018003.b.s #22	ENSGT00390000008702 #24	ENSGT00390000014557 #25	ENSGT00390000018322 #26	ENSGT00940000169031	ENSGT00940000153544.b.h #28	ENSGT00940000160423 #29	ENSGT00940000153380.A #30	ENSGT01050000244951.a.a #31	ENSGT00390000005178 #32	ENSGT00390000003443 #33	ENSGT00940000153377.C #34	ENSGT00940000160124 #35	ENSGT00390000004933 #36	ENSGT00390000015899 #37	ENSGT00390000006367.c
Cercopithecinae_d	ANCESTRAL SPECIES	55	ENSGT00940000156122.g	ENSGT00500000044955.j.b	ENSGT00390000009532.A.d.a	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810.e	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182839.B.a.a #15	ENSGT00940000161014 #16	ENSGT00390000007747 #17	ENSGT00910000147260 #18	ENSGT00940000156039 #20	ENSGT00390000002793 #21	ENSGT01100000263940 #23	ENSGT00390000018003.b.s #22	ENSGT00390000008702 #24	ENSGT00390000014557 #25	ENSGT00390000018322 #26	ENSGT00940000169031	ENSGT00940000153544.b.h #28	ENSGT00940000160423 #29	ENSGT00940000153380.A #30	ENSGT01050000244951.a.a #31	ENSGT00390000005178 #32	ENSGT00390000003443 #33	ENSGT00940000153377.C #34	ENSGT00940000160124 #35	ENSGT00390000004933 #36	ENSGT00390000015899 #37	ENSGT00550000074784.a.a
Sooty mangabey	MODERN SPECIES	102									RASSF8 (ENSCATG00000034380) #15	BHLHE41 (ENSCATG00000032763) #16	SSPN (ENSCATG00000030040) #17	ENSCATG00000030803 #18	ENSCATG00000039629 #19	ITPR2 (ENSCATG00000037798) #20	INTS13 (ENSCATG00000034727) #21	FGFR1OP2 (ENSCATG00000044835) #22	ENSCATG00000016400 #23	TM7SF3 (ENSCATG00000035220) #24	MED21 (ENSCATG00000040715) #25	C12orf71 (ENSCATG00000015267) #26	ENSCATG00000032479 #27	STK38L (ENSCATG00000040090) #28	BMAL2 (ENSCATG00000012766) #29	SMCO2 (ENSCATG00000009890) #30	PPFIBP1 (ENSCATG00000032505) #31	REP15 (ENSCATG00000019197) #32	MRPS35 (ENSCATG00000019666) #33	MANSC4 (ENSCATG00000032050) #34	KLHL42 (ENSCATG00000032112) #35	PTHLH (ENSCATG00000035947) #36	CCDC91 (ENSCATG00000045038) #37
Drill	MODERN SPECIES	1416											ENSMLEG00000031591 #18	SSPN (ENSMLEG00000034537) #17	ITPR2 (ENSMLEG00000025719) #20	INTS13 (ENSMLEG00000043300) #21	ENSMLEG00000027774 #23	FGFR1OP2 (ENSMLEG00000036726) #22	TM7SF3 (ENSMLEG00000032625) #24	MED21 (ENSMLEG00000032094) #25	C12orf71 (ENSMLEG00000032840) #26	ENSMLEG00000042321	STK38L (ENSMLEG00000025232) #28	BMAL2 (ENSMLEG00000043623) #29	SMCO2 (ENSMLEG00000025872) #30	PPFIBP1 (ENSMLEG00000037770) #31	REP15 (ENSMLEG00000016380) #32	MRPS35 (ENSMLEG00000014861) #33	MANSC4 (ENSMLEG00000036910) #34	KLHL42 (ENSMLEG00000037264) #35
Olive baboon	MODERN SPECIES	19	ENSPANG00000042970	ENSPANG00000049022	BCAT1 (ENSPANG00000013681)	ENSPANG00000018182	DNAI7 (ENSPANG00000003393)	ETFRF1 (ENSPANG00000044084)	ENSPANG00000013197	ENSPANG00000042041	ENSPANG00000043398	LMNTD1 (ENSPANG00000024425)	RASSF8 (ENSPANG00000012636) #15	BHLHE41 (ENSPANG00000038795) #16	SSPN (ENSPANG00000004581) #17	ITPR2 (ENSPANG00000013066) #20	INTS13 (ENSPANG00000001087) #21	FGFR1OP2 (ENSPANG00000001088) #22	TM7SF3 (ENSPANG00000007817) #24	MED21 (ENSPANG00000013655) #25	ENSPANG00000039716 ##28	ENSPANG00000041008	C12orf71 (ENSPANG00000001153) #26	STK38L (ENSPANG00000001154) #28	BMAL2 (ENSPANG00000004474) #29	PPFIBP1 (ENSPANG00000012635) #31	REP15 (ENSPANG00000014187) #32	MRPS35 (ENSPANG00000004580) #33	MANSC4 (ENSPANG00000021216) #34	KLHL42 (ENSPANG00000003392) #35	PTHLH (ENSPANG00000013654) #36	CCDC91 (ENSPANG00000013785) #37	ENSPANG00000039812
Macaca	ANCESTRAL SPECIES	6	ENSGT00950000182939.b.a.b	ENSGT00940000156122.g	ENSGT00390000009532.A.d.a	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810.e	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182839.B.a.a #15	ENSGT00940000161014 #16	ENSGT00390000007747 #17	ENSGT00910000147260 #18	ENSGT00940000155037.z #19	ENSGT00940000156039 #20	ENSGT00390000002793 #21	ENSGT00390000018003.b.s #22	ENSGT01100000263940 #23	ENSGT00390000008702 #24	ENSGT00390000014557 #25	ENSGT00390000018322 #26	ENSGT00940000153544.b #28	ENSGT00940000160423 #29	ENSGT01100000266953	ENSGT00940000153380.A #30	ENSGT01050000244951.a.a #31	ENSGT00390000005178 #32	ENSGT00390000003443 #33	ENSGT00940000153377.C #34	ENSGT00940000160124 #35	ENSGT00390000004933 #36	ENSGT00390000015899 #37
Pig-tailed macaque	MODERN SPECIES	187	BCAT1 (ENSMNEG00000041910)	ENSMNEG00000028506	ENSMNEG00000041822	DNAI7 (ENSMNEG00000043789)	ETFRF1 (ENSMNEG00000000006)	KRAS (ENSMNEG00000045179)	LMNTD1 (ENSMNEG00000039772)	RASSF8 (ENSMNEG00000031029) #15	BHLHE41 (ENSMNEG00000037151) #16	SSPN (ENSMNEG00000029357) #17	ENSMNEG00000030540 #18	ENSMNEG00000038447 #19	ITPR2 (ENSMNEG00000022353) #20	ENSMNEG00000029346	INTS13 (ENSMNEG00000045424) #21	FGFR1OP2 (ENSMNEG00000029096) #22	ENSMNEG00000024553 #23	TM7SF3 (ENSMNEG00000037627) #24	MED21 (ENSMNEG00000039549) #25	C12orf71 (ENSMNEG00000028919) #26	STK38L (ENSMNEG00000031026) #28	BMAL2 (ENSMNEG00000037695) #29	ENSMNEG00000041324	SMCO2 (ENSMNEG00000042236) #30	PPFIBP1 (ENSMNEG00000030950) #31	MRPS35 (ENSMNEG00000043409) #33	MANSC4 (ENSMNEG00000035484) #34	KLHL42 (ENSMNEG00000042886) #35	PTHLH (ENSMNEG00000038925) #36	CCDC91 (ENSMNEG00000027722) #37	ENSMNEG00000044668
Macaca_a	ANCESTRAL SPECIES	6	ENSGT00950000182939.b.a.b	ENSGT00940000156122.g	ENSGT00390000009532.A.d.a	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810.e	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182839.B.a.a #15	ENSGT00940000161014 #16	ENSGT00390000007747 #17	ENSGT00910000147260 #18	ENSGT01100000263493.a.b.a.a.a.b.a.a.b.b.a.a.a.a.b.a	ENSGT00940000156039 #20	ENSGT00390000002793 #21	ENSGT00390000018003.b.s #22	ENSGT00390000008702 #24	ENSGT00390000014557 #25	ENSGT00390000018322 #26	ENSGT00940000153544.b #28	ENSGT00940000160423 #29	ENSGT00940000153380.A #30	ENSGT01050000244951.a.a #31	ENSGT00390000005178 #32	ENSGT00390000003443.k #33	ENSGT00940000153377.C #34	ENSGT00940000160124 #35	ENSGT00390000004933 #36	ENSGT00390000015899 #37	ENSGT00390000006367.c	ENSGT00530000063113.A
Rhesus	MODERN SPECIES	2	BCAT1 (ENSMMUG00000012223)	ENSMMUG00000065144	IRAG2 (ENSMMUG00000015374)	ENSMMUG00000038348	DNAI7 (ENSMMUG00000015377)	ETFRF1 (ENSMMUG00000042111)	KRAS (ENSMMUG00000015381)	ENSMMUG00000059361	LMNTD1 (ENSMMUG00000009601)	RASSF8 (ENSMMUG00000018385) #15	BHLHE41 (ENSMMUG00000039562) #16	SSPN (ENSMMUG00000018630) #17	ENSMMUG00000050627	ITPR2 (ENSMMUG00000023128) #20	INTS13 (ENSMMUG00000006466) #21	FGFR1OP2 (ENSMMUG00000006468) #22	TM7SF3 (ENSMMUG00000003217) #24	MED21 (ENSMMUG00000003218) #25	C11H12orf71 (ENSMMUG00000004106) #26	STK38L (ENSMMUG00000023248) #28	ARNTL2 (ENSMMUG00000023249) #29	SMCO2 (ENSMMUG00000021736) #30	PPFIBP1 (ENSMMUG00000021737) #31	REP15 (ENSMMUG00000053271) #32	MRPS35 (ENSMMUG00000063176) #33	KLHL42 (ENSMMUG00000021742) #35	PTHLH (ENSMMUG00000010531) #36	CCDC91 (ENSMMUG00000011802) #37	ENSMMUG00000060392	FAR2 (ENSMMUG00000015810)	ERGIC2 (ENSMMUG00000015811)
Crab-eating macaque	MODERN SPECIES	2	BCAT1 (ENSMFAG00000003944)	ENSMFAG00000041885	DNAI7 (ENSMFAG00000032055)	ETFRF1 (ENSMFAG00000041072)	ENSMFAG00000056709	KRAS (ENSMFAG00000047411)	LMNTD1 (ENSMFAG00000030035)	RASSF8 (ENSMFAG00000001620) #15	BHLHE41 (ENSMFAG00000051510) #16	SSPN (ENSMFAG00000045387) #17	ENSMFAG00000055781 #18	ENSMFAG00000056007	ITPR2 (ENSMFAG00000035688) #20	ENSMFAG00000049957	INTS13 (ENSMFAG00000041404) #21	FGFR1OP2 (ENSMFAG00000043095) #22	TM7SF3 (ENSMFAG00000041364) #24	MED21 (ENSMFAG00000041759) #25	C12orf71 (ENSMFAG00000039958) #26	STK38L (ENSMFAG00000030945) #28	BMAL2 (ENSMFAG00000002262) #29	SMCO2 (ENSMFAG00000003560) #30	PPFIBP1 (ENSMFAG00000036882) #31	REP15 (ENSMFAG00000062839) #32	ENSMFAG00000030289 #33	MANSC4 (ENSMFAG00000034623) #34	KLHL42 (ENSMFAG00000037607) #35	PTHLH (ENSMFAG00000003152) #36	CCDC91 (ENSMFAG00000045497) #37	FAR2 (ENSMFAG00000032325)	ERGIC2 (ENSMFAG00000041736)
Vervet Monkey	MODERN SPECIES	2	SOX5 (ENSCSAG00000007872)	BCAT1 (ENSCSAG00000007862)	ENSCSAG00000019243	ENSCSAG00000007850	IRAG2 (ENSCSAG00000007840)	ENSCSAG00000007824	DNAI7 (ENSCSAG00000007796)	ETFRF1 (ENSCSAG00000007787)	KRAS (ENSCSAG00000007777)	LMNTD1 (ENSCSAG00000007754)	RASSF8 (ENSCSAG00000007736) #15	BHLHE41 (ENSCSAG00000007728) #16	SSPN (ENSCSAG00000007717) #17	ITPR2 (ENSCSAG00000007690) #20	INTS13 (ENSCSAG00000007677) #21	FGFR1OP2 (ENSCSAG00000007670) #22	TM7SF3 (ENSCSAG00000007661) #24	MED21 (ENSCSAG00000007653) #25	C12orf71 (ENSCSAG00000007649) #26	STK38L (ENSCSAG00000007644) #28	BMAL2 (ENSCSAG00000007636) #29	SMCO2 (ENSCSAG00000007630) #30	PPFIBP1 (ENSCSAG00000007602) #31	REP15 (ENSCSAG00000019244) #32	MRPS35 (ENSCSAG00000007584) #33	MANSC4 (ENSCSAG00000007579) #34	KLHL42 (ENSCSAG00000007574) #35	PTHLH (ENSCSAG00000007571) #36	CCDC91 (ENSCSAG00000007565) #37	FAR2 (ENSCSAG00000007541)	ERGIC2 (ENSCSAG00000007493)
Rhinopithecus	ANCESTRAL SPECIES	65	ENSGT00500000044955.j.b	ENSGT00390000009532.A.d.a	ENSGT00530000063722.a	ENSGT00390000004708.c	ENSGT01030000236698	ENSGT00390000004708.d	ENSGT00390000001810.e	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182839.B.a.a #15	ENSGT00940000161014 #16	ENSGT00390000007747 #17	ENSGT00910000147260 #18	ENSGT00940000156039 #20	ENSGT00390000002793 #21	ENSGT00390000018003.b.s #22	ENSGT01100000263940 #23	ENSGT00390000008702 #24	ENSGT00390000014557 #25	ENSGT00390000018322 #26	ENSGT00940000153544.b #28	ENSGT00940000160423 #29	ENSGT00940000153380.A #30	ENSGT01050000244951.a.a #31	ENSGT00390000005178 #32	ENSGT00390000003443 #33	ENSGT00940000153377.C #34	ENSGT00940000160124 #35	ENSGT00390000004933 #36	ENSGT00390000015899 #37	ENSGT00390000000924
Golden snub-nosed monkey	MODERN SPECIES	2187							LMNTD1 (ENSRROG00000029522)	ENSRROG00000027147	RASSF8 (ENSRROG00000039653) #15	BHLHE41 (ENSRROG00000037508) #16	SSPN (ENSRROG00000023865) #17	ENSRROG00000036680 #18	ITPR2 (ENSRROG00000035439) #20	ENSRROG00000037938	INTS13 (ENSRROG00000043367) #21	FGFR1OP2 (ENSRROG00000031733) #22	ENSRROG00000026425 #23	TM7SF3 (ENSRROG00000029894) #24	MED21 (ENSRROG00000036888) #25	C12orf71 (ENSRROG00000033944) #26	ENSRROG00000036736 #31	STK38L (ENSRROG00000029873) #28	BMAL2 (ENSRROG00000029713) #29	SMCO2 (ENSRROG00000041030) #30	PPFIBP1 (ENSRROG00000042748) #31	REP15 (ENSRROG00000026365) #32	MRPS35 (ENSRROG00000042830) #33	MANSC4 (ENSRROG00000042312) #34	KLHL42 (ENSRROG00000042449) #35	PTHLH (ENSRROG00000035365) #36	CCDC91 (ENSRROG00000043883) #37
Black snub-nosed monkey	MODERN SPECIES	2579		BCAT1 (ENSRBIG00000028607)	ENSRBIG00000005977	DNAI7 (ENSRBIG00000035616)	ENSRBIG00000041334	KRAS (ENSRBIG00000037160)	LMNTD1 (ENSRBIG00000044203)	ENSRBIG00000027828	RASSF8 (ENSRBIG00000035003) #15	BHLHE41 (ENSRBIG00000032629) #16	SSPN (ENSRBIG00000012155) #17	ENSRBIG00000044357 #18	ENSRBIG00000029333	ITPR2 (ENSRBIG00000035254) #20	INTS13 (ENSRBIG00000038639) #21	FGFR1OP2 (ENSRBIG00000040847) #22	ENSRBIG00000024015 #23	TM7SF3 (ENSRBIG00000027607) #24	MED21 (ENSRBIG00000032391) #25
Cercopithecidae	ANCESTRAL SPECIES																	ENSGT00390000018003.b.t ##22
Cercopithecinae	ANCESTRAL SPECIES																	ENSGT00390000018003.b.t ##22
Cercopithecinae_a	ANCESTRAL SPECIES																	ENSGT00390000018003.b.t ##22
Macaca	ANCESTRAL SPECIES																	ENSGT00390000018003.b.t ##22
Pig-tailed macaque	MODERN SPECIES	196	ARF3 (ENSMNEG00000032173)	WNT10B (ENSMNEG00000022399)	WNT1 (ENSMNEG00000043908)	DDN (ENSMNEG00000036264)	PRKAG1 (ENSMNEG00000032221)	KMT2D (ENSMNEG00000034150)	RHEBL1 (ENSMNEG00000032195)	DHH (ENSMNEG00000033172)	LMBR1L (ENSMNEG00000029874)	TUBA1B (ENSMNEG00000031206)	TUBA1C (ENSMNEG00000000827)	PRPH (ENSMNEG00000033632)	TROAP (ENSMNEG00000039086)	C1QL4 (ENSMNEG00000043324)	DNAJC22 (ENSMNEG00000036498)	ENSMNEG00000037232 ##22	SPATS2 (ENSMNEG00000037739)	KCNH3 (ENSMNEG00000026566)	MCRS1 (ENSMNEG00000040429)	FAM186B (ENSMNEG00000031420)	PRPF40B (ENSMNEG00000033306)	FMNL3 (ENSMNEG00000045499)	ENSMNEG00000044447	ENSMNEG00000040412	NCKAP5L (ENSMNEG00000030526)	BCDIN3D (ENSMNEG00000029191)	ENSMNEG00000031574	FAIM2 (ENSMNEG00000029516)	AQP2 (ENSMNEG00000038948)	AQP5 (ENSMNEG00000032433)	ENSMNEG00000034059
Cercopithecinae_b	ANCESTRAL SPECIES																	ENSGT00390000018003.b.t ##22
Cercopithecinae_d	ANCESTRAL SPECIES	3	ENSGT00940000159521	ENSGT00950000183080.a.a	ENSGT00940000160653	ENSGT00940000160329	ENSGT00390000016495	ENSGT00950000183019.f.b.a	ENSGT00940000156707	ENSGT00940000161665	ENSGT00940000161132	ENSGT00390000007809.a	ENSGT00950000182825.A.a.b.a.b.a.a.a.a.b.m	ENSGT00940000160203	ENSGT00390000012132.d	ENSGT00940000155969	ENSGT00390000012136	ENSGT00390000018003.b.t ##22	ENSGT00390000001138.a	ENSGT00940000161742	ENSGT00390000005536	ENSGT00390000008918.a.a	ENSGT00390000001231.s.b	ENSGT00940000162031	ENSGT00930000150980.b	ENSGT00940000159962	ENSGT00390000005534.b.b.c.b.b.a.b.b	ENSGT01050000244940.a.a.r.a	ENSGT00940000154978.i.a	ENSGT00530000063607.a	ENSGT00940000153993.B	ENSGT00910000146932	ENSGT01050000244890.a.b.b
Drill	MODERN SPECIES	959	WNT10B (ENSMLEG00000023418)	WNT1 (ENSMLEG00000006250)	DDN (ENSMLEG00000042019)	PRKAG1 (ENSMLEG00000040639)	KMT2D (ENSMLEG00000027718)	RHEBL1 (ENSMLEG00000043169)	DHH (ENSMLEG00000029947)	LMBR1L (ENSMLEG00000043801)	ENSMLEG00000026197	ENSMLEG00000031016	TUBA1C (ENSMLEG00000043554)	PRPH (ENSMLEG00000029249)	TROAP (ENSMLEG00000035849)	C1QL4 (ENSMLEG00000032872)	DNAJC22 (ENSMLEG00000021601)	ENSMLEG00000027073 ##22
Sooty mangabey	MODERN SPECIES	571	CCDC65 (ENSCATG00000035262)	ARF3 (ENSCATG00000033929)	WNT1 (ENSCATG00000029984)	WNT10B (ENSCATG00000042594)	DDN (ENSCATG00000041447)	PRKAG1 (ENSCATG00000035196)	KMT2D (ENSCATG00000038964)	RHEBL1 (ENSCATG00000037990)	DHH (ENSCATG00000041798)	LMBR1L (ENSCATG00000012344)	TUBA1B (ENSCATG00000038328)	TUBA1C (ENSCATG00000031924)	PRPH (ENSCATG00000039831)	TROAP (ENSCATG00000043456)	C1QL4 (ENSCATG00000043584)	ENSCATG00000026332 ##22	SPATS2 (ENSCATG00000041816)	KCNH3 (ENSCATG00000031210)	MCRS1 (ENSCATG00000039134)	ENSCATG00000038897	FAM186B (ENSCATG00000031582)	PRPF40B (ENSCATG00000032444)	FMNL3 (ENSCATG00000039154)	ENSCATG00000031091	TMBIM6 (ENSCATG00000044300)	ENSCATG00000038799	NCKAP5L (ENSCATG00000035514)	BCDIN3D (ENSCATG00000044648)	ENSCATG00000044213	FAIM2 (ENSCATG00000035599)	AQP2 (ENSCATG00000035395)
Hominoidea	ANCESTRAL SPECIES	5	ENSGT00500000044955.j.b	ENSGT00390000009532.A.d.a	ENSGT00560000078473	ENSGT01040000242138	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810.e	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182839.B.a.a #15	ENSGT00940000161014 #16	ENSGT00390000007747 #17	ENSGT00940000156039 #20	ENSGT00390000002793 #21	ENSGT00970000193562	ENSGT00390000018003.b #22	ENSGT00390000008702 #24	ENSGT00390000014557 #25	ENSGT00390000018322 #26	ENSGT00940000153544.b #28	ENSGT00940000160423 #29	ENSGT00940000153380.A #30	ENSGT01050000244951.a.a #31	ENSGT00390000005178 #32	ENSGT00390000003443 #33	ENSGT00940000153377.C #34	ENSGT00940000160124 #35	ENSGT00390000004933 #36	ENSGT00390000015899 #37	ENSGT00390000006367.c	ENSGT00530000063113.A
Hominidae	ANCESTRAL SPECIES	4	ENSGT00500000044955.j.b	ENSGT00390000009532.A.d.a	ENSGT00560000078473	ENSGT01040000242138	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810.e	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182839.B.a.a #15	ENSGT00940000161014 #16	ENSGT00390000007747 #17	ENSGT00940000156039 #20	ENSGT00390000002793 #21	ENSGT00970000193562	ENSGT00390000018003.b #22	ENSGT00390000008702 #24	ENSGT00390000014557 #25	ENSGT00390000018322 #26	ENSGT00940000153544.b #28	ENSGT00940000160423 #29	ENSGT00940000153380.A #30	ENSGT01050000244951.a.a #31	ENSGT00390000005178 #32	ENSGT00390000003443 #33	ENSGT00940000153377.C #34	ENSGT00940000160124 #35	ENSGT00390000004933 #36	ENSGT00390000015899 #37	ENSGT00390000006367.c	ENSGT00530000063113.A
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	5	ENSGT00500000044955.j.b	ENSGT00390000009532.A.d.a	ENSGT00560000078473	ENSGT01040000242138	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810.e	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182839.B.a.a #15	ENSGT00940000161014 #16	ENSGT00390000007747 #17	ENSGT00940000156039 #20	ENSGT00390000002793 #21	ENSGT00970000193562	ENSGT00390000018003.b #22	ENSGT00390000008702 #24	ENSGT00390000014557 #25	ENSGT00390000018322 #26	ENSGT00940000153544.b #28	ENSGT00940000160423 #29	ENSGT00940000153380.A #30	ENSGT01050000244951.a.a #31	ENSGT00390000005178 #32	ENSGT00390000003443 #33	ENSGT00940000153377.C #34	ENSGT00940000160124 #35	ENSGT00390000004933 #36	ENSGT00390000015899 #37	ENSGT00390000006367.c	ENSGT00530000063113.A
Homo/Pan group	ANCESTRAL SPECIES	6	ENSGT00390000009532.A.d.a	ENSGT00560000078473	ENSGT01040000242138	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810.e	ENSGT00940000155871	ENSGT00390000014814.a.b.a.a.b	ENSGT00910000144343	ENSGT00950000182839.B.a.a #15	ENSGT00940000161014 #16	ENSGT00390000007747 #17	ENSGT00940000156039 #20	ENSGT00390000002793 #21	ENSGT01100000263940 #23	ENSGT00390000018003.b #22	ENSGT00390000008702 #24	ENSGT00390000014557 #25	ENSGT00390000018322 #26	ENSGT00940000153544.b #28	ENSGT00940000160423 #29	ENSGT00940000153380.A #30	ENSGT01050000244951.a.a #31	ENSGT00390000005178 #32	ENSGT00390000003443 #33	ENSGT00940000153377.C #34	ENSGT00940000160124 #35	ENSGT00390000004933 #36	ENSGT00390000015899 #37	ENSGT00390000006367.c	ENSGT00530000063113.A
Pan	ANCESTRAL SPECIES	4	ENSGT00560000078473	ENSGT01040000242138	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810.e	ENSGT00940000155871	ENSGT00390000014814.a.b.a.a.b	ENSGT00910000144343	ENSGT00390000000987.b	ENSGT00950000182839.B.a.a #15	ENSGT00940000161014 #16	ENSGT00390000007747 #17	ENSGT00940000156039 #20	ENSGT00390000002793 #21	ENSGT01100000263940 #23	ENSGT00390000018003.b #22	ENSGT00390000008702 #24	ENSGT00390000014557 #25	ENSGT00390000018322 #26	ENSGT00940000153544.b #28	ENSGT00940000160423 #29	ENSGT00940000153380.A #30	ENSGT01050000244951.a.a #31	ENSGT00390000005178 #32	ENSGT00390000003443 #33	ENSGT00940000153377.C #34	ENSGT00940000160124 #35	ENSGT00390000004933 #36	ENSGT00390000015899 #37	ENSGT00390000006367.c	ENSGT00530000063113.A
Chimpanzee	MODERN SPECIES	3	ENSPTRG00000040566	ENSPTRG00000042522	IRAG2 (ENSPTRG00000004773)	DNAI7 (ENSPTRG00000004774)	ETFRF1 (ENSPTRG00000042785)	KRAS (ENSPTRG00000004775)	ENSPTRG00000048694	LMNTD1 (ENSPTRG00000004776)	ENSPTRG00000042053	RASSF8 (ENSPTRG00000004778) #15	BHLHE41 (ENSPTRG00000004779) #16	SSPN (ENSPTRG00000004780) #17	ITPR2 (ENSPTRG00000004781) #20	INTS13 (ENSPTRG00000004782) #21	ENSPTRG00000044155 #23	FGFR1OP2 (ENSPTRG00000004783) #22	TM7SF3 (ENSPTRG00000004784) #24	MED21 (ENSPTRG00000004785) #25	C12H12orf71 (ENSPTRG00000034261) #26	ENSPTRG00000050206 #31	STK38L (ENSPTRG00000004787) #28	ARNTL2 (ENSPTRG00000004788) #29	SMCO2 (ENSPTRG00000004789) #30	PPFIBP1 (ENSPTRG00000004790) #31	REP15 (ENSPTRG00000004791) #32	MRPS35 (ENSPTRG00000004792) #33	MANSC4 (ENSPTRG00000029669) #34	KLHL42 (ENSPTRG00000004793) #35	PTHLH (ENSPTRG00000004794) #36	CCDC91 (ENSPTRG00000004795) #37	FAR2 (ENSPTRG00000004796)
Bonobo	MODERN SPECIES	3	ENSPPAG00000031238	BCAT1 (ENSPPAG00000029336)	ENSPPAG00000034604	ENSPPAG00000030103	DNAI7 (ENSPPAG00000029931)	ETFRF1 (ENSPPAG00000039750)	KRAS (ENSPPAG00000038418)	LMNTD1 (ENSPPAG00000019285)	ENSPPAG00000041642	RASSF8 (ENSPPAG00000031944) #15	ENSPPAG00000035875 #16	SSPN (ENSPPAG00000032921) #17	ITPR2 (ENSPPAG00000027820) #20	INTS13 (ENSPPAG00000012301) #21	ENSPPAG00000007845 #23	FGFR1OP2 (ENSPPAG00000032185) #22	TM7SF3 (ENSPPAG00000033125) #24	MED21 (ENSPPAG00000031067) #25	C12orf71 (ENSPPAG00000039705) #26	ENSPPAG00000030904 #31	STK38L (ENSPPAG00000028856) #28	BMAL2 (ENSPPAG00000040196) #29	SMCO2 (ENSPPAG00000039937) #30	PPFIBP1 (ENSPPAG00000033579) #31	REP15 (ENSPPAG00000022630) #32	ENSPPAG00000008983 #33	ENSPPAG00000024107 #33	MANSC4 (ENSPPAG00000002372) #34	KLHL42 (ENSPPAG00000041574) #35	PTHLH (ENSPPAG00000027940) #36	CCDC91 (ENSPPAG00000035986) #37
Human	MODERN SPECIES	3	ST8SIA1 (ENSG00000111728)	C2CD5 (ENSG00000111731)	ETNK1 (ENSG00000139163)	SOX5 (ENSG00000134532)	BCAT1 (ENSG00000060982)	IRAG2 (ENSG00000118308)	DNAI7 (ENSG00000118307)	ETFRF1 (ENSG00000205707)	KRAS (ENSG00000133703)	LMNTD1 (ENSG00000152936)	RASSF8 (ENSG00000123094) #15	BHLHE41 (ENSG00000123095) #16	SSPN (ENSG00000123096) #17	ITPR2 (ENSG00000123104) #20	INTS13 (ENSG00000064102) #21	FGFR1OP2 (ENSG00000111790) #22	TM7SF3 (ENSG00000064115) #24	MED21 (ENSG00000152944) #25	C12orf71 (ENSG00000214700) #26	STK38L (ENSG00000211455) #28	BMAL2 (ENSG00000029153) #29	SMCO2 (ENSG00000165935) #30	PPFIBP1 (ENSG00000110841) #31	REP15 (ENSG00000174236) #32	MRPS35 (ENSG00000061794) #33	MANSC4 (ENSG00000205693) #34	KLHL42 (ENSG00000087448) #35	PTHLH (ENSG00000087494) #36	CCDC91 (ENSG00000123106) #37	FAR2 (ENSG00000064763)	ERGIC2 (ENSG00000087502)
Gorilla	MODERN SPECIES	3	BCAT1 (ENSGGOG00000009816)	ENSGGOG00000026884	ENSGGOG00000027972	ENSGGOG00000003082	DNAI7 (ENSGGOG00000011368)	ETFRF1 (ENSGGOG00000008571)	KRAS (ENSGGOG00000008043)	ENSGGOG00000036425	LMNTD1 (ENSGGOG00000008836)	ENSGGOG00000026044	BHLHE41 (ENSGGOG00000015498) #16	SSPN (ENSGGOG00000007092) #17	ITPR2 (ENSGGOG00000008010) #20	INTS13 (ENSGGOG00000011827) #21	ENSGGOG00000043459	FGFR1OP2 (ENSGGOG00000023849) #22	TM7SF3 (ENSGGOG00000016299) #24	MED21 (ENSGGOG00000016313) #25	C12orf71 (ENSGGOG00000013185) #26	STK38L (ENSGGOG00000001820) #28	BMAL2 (ENSGGOG00000007332) #29	ENSGGOG00000013445 #30	PPFIBP1 (ENSGGOG00000013345) #31	REP15 (ENSGGOG00000024389) #32	MRPS35 (ENSGGOG00000003193) #33	MANSC4 (ENSGGOG00000002828) #34	KLHL42 (ENSGGOG00000043294) #35	PTHLH (ENSGGOG00000005291) #36	CCDC91 (ENSGGOG00000000071) #37	FAR2 (ENSGGOG00000000571)	ERGIC2 (ENSGGOG00000024865)
Orangutan	MODERN SPECIES	3	ETNK1 (ENSPPYG00000040411)	SOX5 (ENSPPYG00000004363)	BCAT1 (ENSPPYG00000004365)	ENSPPYG00000005175	DNAI7 (ENSPPYG00000038936)	ETFRF1 (ENSPPYG00000004368)	ENSPPYG00000034871	KRAS (ENSPPYG00000041739)	ENSPPYG00000030909	LMNTD1 (ENSPPYG00000004370)	RASSF8 (ENSPPYG00000004371) #15	BHLHE41 (ENSPPYG00000004372) #16	SSPN (ENSPPYG00000034586) #17	ITPR2 (ENSPPYG00000004374) #20	INTS13 (ENSPPYG00000029635) #21	FGFR1OP2 (ENSPPYG00000035340) #22	TM7SF3 (ENSPPYG00000004376) #24	MED21 (ENSPPYG00000040114) #25	C12orf71 (ENSPPYG00000004378) #26	STK38L (ENSPPYG00000004379) #28	BMAL2 (ENSPPYG00000004380) #29	SMCO2 (ENSPPYG00000035944) #30	PPFIBP1 (ENSPPYG00000004381) #31	REP15 (ENSPPYG00000037943) #32	MRPS35 (ENSPPYG00000004383) #33	MANSC4 (ENSPPYG00000004384) #34	KLHL42 (ENSPPYG00000033094) #35	PTHLH (ENSPPYG00000004386) #36	CCDC91 (ENSPPYG00000004387) #37	FAR2 (ENSPPYG00000004389)	ERGIC2 (ENSPPYG00000004390)
Gibbon	MODERN SPECIES	15	SOX5 (ENSNLEG00000005036)	ENSNLEG00000030792	BCAT1 (ENSNLEG00000005083)	ENSNLEG00000005199	ENSNLEG00000005126	DNAI7 (ENSNLEG00000005202)	ETFRF1 (ENSNLEG00000005260)	KRAS (ENSNLEG00000027684)	LMNTD1 (ENSNLEG00000005275)	RASSF8 (ENSNLEG00000005293) #15	BHLHE41 (ENSNLEG00000005307) #16	SSPN (ENSNLEG00000033111) #17	ITPR2 (ENSNLEG00000005317) #20	INTS13 (ENSNLEG00000005368) #21	ENSNLEG00000036090 #23	FGFR1OP2 (ENSNLEG00000005400) #22	TM7SF3 (ENSNLEG00000005416) #24	MED21 (ENSNLEG00000005431) #25	C12orf71 (ENSNLEG00000005438) #26	STK38L (ENSNLEG00000005439) #28	BMAL2 (ENSNLEG00000005463) #29	SMCO2 (ENSNLEG00000005501) #30	PPFIBP1 (ENSNLEG00000005508) #31	REP15 (ENSNLEG00000018530) #32	MRPS35 (ENSNLEG00000036292) #33	MANSC4 (ENSNLEG00000005573) #34	KLHL42 (ENSNLEG00000005575) #35	PTHLH (ENSNLEG00000005581) #36	CCDC91 (ENSNLEG00000005586) #37	FAR2 (ENSNLEG00000005604)	ERGIC2 (ENSNLEG00000005620)
Platyrrhini	ANCESTRAL SPECIES	44	ENSGT00390000000212	ENSGT00950000182939.b.a.b	ENSGT00940000156122	ENSGT00390000009532.A.d.a	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182839.B.a.a #15	ENSGT00940000161014 #16	ENSGT00390000007747 #17	ENSGT00910000147260 #18	ENSGT00940000156039 #20	ENSGT00390000002793 #21	ENSGT00390000018003.b #22	ENSGT00970000193562	ENSGT00390000008702 #24	ENSGT00390000014557 #25	ENSGT00940000153544.b #28	ENSGT00940000160423 #29	ENSGT01100000266953	ENSGT00940000153380.A #30	ENSGT00390000018322 #26	ENSGT01050000244951.a.a #31	ENSGT00390000005178 #32	ENSGT00390000003443 #33	ENSGT00940000153377.C #34	ENSGT00940000160124 #35	ENSGT00390000004933 #36	ENSGT00390000015899 #37
Cebidae	ANCESTRAL SPECIES	2	ENSGT00390000000212	ENSGT00950000182939.b.a.b	ENSGT00940000156122	ENSGT00390000009532.A.d.a	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182839.B.a.a #15	ENSGT00940000161014 #16	ENSGT00390000007747 #17	ENSGT00910000147260 #18	ENSGT00940000156039 #20	ENSGT00390000002793 #21	ENSGT00390000018003.b #22	ENSGT00970000193562	ENSGT00390000008702 #24	ENSGT00390000014557 #25	ENSGT00940000153544.b #28	ENSGT00940000160423 #29	ENSGT01100000266953	ENSGT00940000153380.A #30	ENSGT00390000018322 #26	ENSGT01050000244951.a.a #31	ENSGT00390000005178 #32	ENSGT00390000003443 #33	ENSGT00940000153377.C #34	ENSGT00940000160124 #35	ENSGT00390000004933 #36	ENSGT00390000015899 #37
Cebidae_a	ANCESTRAL SPECIES	5	ENSGT00390000000212	ENSGT00950000182939.b.a.b	ENSGT00940000156122	ENSGT00390000009532.A.d.a	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182839.B.a.a #15	ENSGT00940000161014 #16	ENSGT00390000007747 #17	ENSGT00910000147260 #18	ENSGT00940000156039 #20	ENSGT00390000002793 #21	ENSGT00390000018003.b #22	ENSGT00970000193562	ENSGT00390000008702 #24	ENSGT00390000014557 #25	ENSGT00940000153544.b #28	ENSGT00940000160423 #29	ENSGT01100000266953	ENSGT00940000153380.A #30	ENSGT00390000018322 #26	ENSGT01050000244951.a.a #31	ENSGT00390000003443 #33	ENSGT00940000153377.C #34	ENSGT00940000160124 #35	ENSGT00390000004933 #36	ENSGT00390000015899 #37	ENSGT00390000006367.c
Bolivian squirrel monkey	MODERN SPECIES	60	C2CD5 (ENSSBOG00000030915)	ETNK1 (ENSSBOG00000032121)	SOX5 (ENSSBOG00000035936)	BCAT1 (ENSSBOG00000019950)	ENSSBOG00000033246	ENSSBOG00000019545	DNAI7 (ENSSBOG00000028936)	ETFRF1 (ENSSBOG00000025823)	KRAS (ENSSBOG00000022477)	LMNTD1 (ENSSBOG00000026881)	RASSF8 (ENSSBOG00000021926) #15	BHLHE41 (ENSSBOG00000021412) #16	SSPN (ENSSBOG00000023830) #17	ITPR2 (ENSSBOG00000027480) #20	INTS13 (ENSSBOG00000020959) #21	FGFR1OP2 (ENSSBOG00000026484) #22	ENSSBOG00000013153	TM7SF3 (ENSSBOG00000027680) #24	MED21 (ENSSBOG00000025603) #25	STK38L (ENSSBOG00000027436) #28	BMAL2 (ENSSBOG00000029898) #29	ENSSBOG00000026212	SMCO2 (ENSSBOG00000028718) #30	PPFIBP1 (ENSSBOG00000019194) #31	C12orf71 (ENSSBOG00000030192) #26	MRPS35 (ENSSBOG00000031588) #33	ENSSBOG00000026098	MANSC4 (ENSSBOG00000020036) #34	KLHL42 (ENSSBOG00000015570) #35	PTHLH (ENSSBOG00000031102) #36	CCDC91 (ENSSBOG00000021408) #37
Capuchin	MODERN SPECIES	367									LMNTD1 (ENSCCAG00000022403)	RASSF8 (ENSCCAG00000025704) #15	BHLHE41 (ENSCCAG00000005712) #16	SSPN (ENSCCAG00000030479) #17	ENSCCAG00000028411 #18	ITPR2 (ENSCCAG00000034633) #20	INTS13 (ENSCCAG00000024460) #21	FGFR1OP2 (ENSCCAG00000025617) #22	TM7SF3 (ENSCCAG00000031795) #24	MED21 (ENSCCAG00000032523) #25	C12orf71 (ENSCCAG00000026272) #26	RPSA (ENSCCAG00000005344)	STK38L (ENSCCAG00000028613) #28	ARNTL2 (ENSCCAG00000032347) #29	SMCO2 (ENSCCAG00000033880) #30	PPFIBP1 (ENSCCAG00000027863) #31	MRPS35 (ENSCCAG00000026788) #33	MANSC4 (ENSCCAG00000021395) #34	KLHL42 (ENSCCAG00000037388) #35
Marmoset	MODERN SPECIES	21	C2CD5 (ENSCJAG00000047559)	ENSCJAG00000072867	ETNK1 (ENSCJAG00000042185)	SOX5 (ENSCJAG00000044866)	BCAT1 (ENSCJAG00000044064)	ENSCJAG00000047139	DNAI7 (ENSCJAG00000038718)	ETFRF1 (ENSCJAG00000082700)	KRAS (ENSCJAG00000044757)	LMNTD1 (ENSCJAG00000045286)	RASSF8 (ENSCJAG00000038818) #15	BHLHE41 (ENSCJAG00000045144) #16	SSPN (ENSCJAG00000041997) #17	ITPR2 (ENSCJAG00000047807) #20	INTS13 (ENSCJAG00000044044) #21	FGFR1OP2 (ENSCJAG00000043357) #22	TM7SF3 (ENSCJAG00000046477) #24	MED21 (ENSCJAG00000083235) #25	C12orf71 (ENSCJAG00000072248) #26	STK38L (ENSCJAG00000041419) #28	BMAL2 (ENSCJAG00000046502) #29	SMCO2 (ENSCJAG00000041251) #30	PPFIBP1 (ENSCJAG00000038353) #31	REP15 (ENSCJAG00000054786) #32	MRPS35 (ENSCJAG00000043200) #33	MANSC4 (ENSCJAG00000042221) #34	KLHL42 (ENSCJAG00000047536) #35	ENSCJAG00000086155	PTHLH (ENSCJAG00000043999) #36	CCDC91 (ENSCJAG00000040247) #37	FAR2 (ENSCJAG00000046025)
Mas night monkey	MODERN SPECIES	1110	ENSANAG00000019454	SOX5 (ENSANAG00000035934)	BCAT1 (ENSANAG00000024086)	ENSANAG00000031949	DNAI7 (ENSANAG00000030533)	ENSANAG00000020002	KRAS (ENSANAG00000030296)	ENSANAG00000020670	LMNTD1 (ENSANAG00000015391)	RASSF8 (ENSANAG00000019236) #15	BHLHE41 (ENSANAG00000035475) #16	ENSANAG00000031081 #18	SSPN (ENSANAG00000025202) #17	ITPR2 (ENSANAG00000022196) #20	INTS13 (ENSANAG00000022317) #21	FGFR1OP2 (ENSANAG00000035478) #22	TM7SF3 (ENSANAG00000030204) #24	MED21 (ENSANAG00000025951) #25	ENSANAG00000023438	STK38L (ENSANAG00000025609) #28	BMAL2 (ENSANAG00000034090) #29	SMCO2 (ENSANAG00000030042) #30
Tarsier	MODERN SPECIES	4538														ITPR2 (ENSTSYG00000001841) #20	INTS13 (ENSTSYG00000011213) #21	FGFR1OP2 (ENSTSYG00000032425) #22	TM7SF3 (ENSTSYG00000013948) #24	MED21 (ENSTSYG00000013953) #25
Strepsirrhini	ANCESTRAL SPECIES	3	ENSGT00390000000212	ENSGT00950000182939.b.a.b	ENSGT00940000156122	ENSGT00390000009532.A.d.a	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182839.B.a.a #15	ENSGT00940000161014 #16	ENSGT00390000007747 #17	ENSGT00940000156039 #20	ENSGT00390000002793 #21	ENSGT00970000193562	ENSGT00390000018003.b #22	ENSGT00390000008702 #24	ENSGT00390000014557 #25	ENSGT00940000153544.b #28	ENSGT00940000160423 #29	ENSGT00940000153380.A #30	ENSGT00390000018322 #26	ENSGT01050000244951.a.a #31	ENSGT00390000005178 #32	ENSGT00390000003443 #33	ENSGT00940000153377.C #34	ENSGT00940000160124 #35	ENSGT00390000004933 #36	ENSGT00390000015899 #37	ENSGT00390000006367.c	ENSGT00530000063113.A
Bushbaby	MODERN SPECIES	172	C2CD5 (ENSOGAG00000016517)	ETNK1 (ENSOGAG00000033436)	SOX5 (ENSOGAG00000002524)	BCAT1 (ENSOGAG00000013677)	IRAG2 (ENSOGAG00000014796)	DNAI7 (ENSOGAG00000014801)	ETFRF1 (ENSOGAG00000014810)	KRAS (ENSOGAG00000014812)	ENSOGAG00000011065	ENSOGAG00000026045	RASSF8 (ENSOGAG00000026328) #15	ENSOGAG00000032001 #16	SSPN (ENSOGAG00000028077) #17	ITPR2 (ENSOGAG00000009785) #20	INTS13 (ENSOGAG00000009801) #21	FGFR1OP2 (ENSOGAG00000003431) #22	MED21 (ENSOGAG00000011215) #25	STK38L (ENSOGAG00000028901) #28	BMAL2 (ENSOGAG00000011668) #29	ENSOGAG00000024687	SMCO2 (ENSOGAG00000005287) #30	ENSOGAG00000032700 #26	PPFIBP1 (ENSOGAG00000010615) #31	MRPS35 (ENSOGAG00000010630) #33	MANSC4 (ENSOGAG00000010634) #34	KLHL42 (ENSOGAG00000010636) #35	ENSOGAG00000028656	PTHLH (ENSOGAG00000010639) #36	ENSOGAG00000000760 #37	FAR2 (ENSOGAG00000015527)	ERGIC2 (ENSOGAG00000014293)
Lemuriformes	ANCESTRAL SPECIES	1	ENSGT00940000156122	ENSGT00390000009532.A.d.a	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155653.a	ENSGT01030000236698	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182839.B.a.a #15	ENSGT00940000161014 #16	ENSGT00390000007747 #17	ENSGT00940000156039 #20	ENSGT00390000002793 #21	ENSGT00970000193562	ENSGT00390000018003.b #22	ENSGT00390000008702 #24	ENSGT00390000014557 #25	ENSGT00940000153544.b #28	ENSGT00940000160423 #29	ENSGT00940000153380.A #30	ENSGT00390000018322 #26	ENSGT01050000244951.a.a #31	ENSGT00390000005178 #32	ENSGT00390000003443 #33	ENSGT00940000153377.C #34	ENSGT00940000160124 #35	ENSGT00390000004933 #36	ENSGT00390000015899 #37	ENSGT00390000006367.c	ENSGT00530000063113.A
Lemuriformes_a	ANCESTRAL SPECIES	8	ENSGT00940000156122	ENSGT00390000009532.A.d.a	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155653.a	ENSGT01030000236698	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182839.B.a.a #15	ENSGT00940000161014 #16	ENSGT00390000007747 #17	ENSGT00940000156039 #20	ENSGT00390000002793 #21	ENSGT00970000193562	ENSGT00390000018003.b #22	ENSGT00390000008702 #24	ENSGT00390000014557 #25	ENSGT00940000153544.b #28	ENSGT00940000160423 #29	ENSGT00940000153380.A #30	ENSGT00390000018322 #26	ENSGT01050000244951.a.a #31	ENSGT00390000005178 #32	ENSGT00390000003443 #33	ENSGT00940000153377.C #34	ENSGT00940000160124 #35	ENSGT00390000004933 #36	ENSGT00390000015899 #37	ENSGT00390000006367.c	ENSGT00530000063113.A
Coquerels sifaka	MODERN SPECIES	213	ETNK1 (ENSPCOG00000018996)	ENSPCOG00000022604	SOX5 (ENSPCOG00000019087)	ENSPCOG00000019414	BCAT1 (ENSPCOG00000018741)	IRAG2 (ENSPCOG00000025021)	DNAI7 (ENSPCOG00000023975)	ETFRF1 (ENSPCOG00000014691)	ENSPCOG00000016197	LMNTD1 (ENSPCOG00000004145)	RASSF8 (ENSPCOG00000017337) #15	BHLHE41 (ENSPCOG00000013824) #16	SSPN (ENSPCOG00000009425) #17	ITPR2 (ENSPCOG00000011044) #20	INTS13 (ENSPCOG00000011504) #21	FGFR1OP2 (ENSPCOG00000025820) #22	ENSPCOG00000022092 #24	ENSPCOG00000028642 #25	ENSPCOG00000027070 #25	STK38L (ENSPCOG00000018208) #28	BMAL2 (ENSPCOG00000026401) #29	ENSPCOG00000026042 #30	C12orf71 (ENSPCOG00000025010) #26	PPFIBP1 (ENSPCOG00000024753) #31	ENSPCOG00000015665 #33	MANSC4 (ENSPCOG00000024207) #34	KLHL42 (ENSPCOG00000028752) #35	ENSPCOG00000013305	PTHLH (ENSPCOG00000027440) #36	ENSPCOG00000020695	ENSPCOG00000023013
Greater bamboo lemur	MODERN SPECIES	261	STAMBP (ENSPSMG00000018623)	ENSPSMG00000018607	ENSPSMG00000018599	DUSP11 (ENSPSMG00000018582)	ENSPSMG00000018579	KRAS (ENSPSMG00000018515)	LMNTD1 (ENSPSMG00000018464)	RASSF8 (ENSPSMG00000018430) #15	ENSPSMG00000018416	BHLHE41 (ENSPSMG00000018412) #16	SSPN (ENSPSMG00000018398) #17	ENSPSMG00000018385	ITPR2 (ENSPSMG00000018351) #20	INTS13 (ENSPSMG00000018258) #21	ENSPSMG00000018245	FGFR1OP2 (ENSPSMG00000018233) #22	TM7SF3 (ENSPSMG00000018210) #24	MED21 (ENSPSMG00000018193) #25
Mouse lemur	MODERN SPECIES	29	C2CD5 (ENSMICG00000002294)	ETNK1 (ENSMICG00000009917)	ENSMICG00000041591	ENSMICG00000031363	ENSMICG00000036516	ENSMICG00000004844	IRAG2 (ENSMICG00000030721)	ETFRF1 (ENSMICG00000031339)	DNAI7 (ENSMICG00000001474)	LMNTD1 (ENSMICG00000038042)	RASSF8 (ENSMICG00000006156) #15	BHLHE41 (ENSMICG00000026785) #16	SSPN (ENSMICG00000029815) #17	ITPR2 (ENSMICG00000009476) #20	INTS13 (ENSMICG00000037722) #21	FGFR1OP2 (ENSMICG00000035135) #22	SOX5 (ENSMICG00000046531)	ENSMICG00000006940	AMN1 (ENSMICG00000034335)	RESF1 (ENSMICG00000038464)	BICD1 (ENSMICG00000014915)	ENSMICG00000034434	FGD4 (ENSMICG00000017663)	DNM1L (ENSMICG00000017715)	YARS2 (ENSMICG00000033335)	PKP2 (ENSMICG00000001164)	OR6C4 (ENSMICG00000013185)	ENSMICG00000017533	ITGA7 (ENSMICG00000010827)	BLOC1S1 (ENSMICG00000010878)	RDH5 (ENSMICG00000043819)
Euarchontoglires_A	ANCESTRAL SPECIES	5	ENSGT01030000234535.D	ENSGT00390000000212	ENSGT00950000182939.b.a.b	ENSGT00940000156122	ENSGT00390000009532.A.d.a	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182839.B.a.a #15	ENSGT00940000161014 #16	ENSGT00390000007747 #17	ENSGT00940000156039 #20	ENSGT00390000002793 #21	ENSGT00390000018003.b #22	ENSGT00970000193562	ENSGT00390000008702 #24	ENSGT00390000014557 #25	ENSGT00940000153544.b #28	ENSGT00940000160423 #29	ENSGT00940000153380.A #30	ENSGT00390000018322 #26	ENSGT01050000244951.a.a #31	ENSGT00390000005178 #32	ENSGT00390000003443 #33	ENSGT00940000153377.C #34	ENSGT00940000160124 #35	ENSGT00390000004933 #36	ENSGT00390000015899 #37	ENSGT00390000006367.c
Tree shrew	MODERN SPECIES	5711														ENSTBEG00000011096 #21	ENSTBEG00000011350	FGFR1OP2 (ENSTBEG00000011581) #22	TM7SF3 (ENSTBEG00000011725) #24	MED21 (ENSTBEG00000012031) #25
Glires	ANCESTRAL SPECIES	4	ENSGT01030000234535.D	ENSGT00390000000212	ENSGT00950000182939.b.a.b	ENSGT00940000156122	ENSGT00390000009532.A.d.a	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182839.B.a.a #15	ENSGT00940000161014 #16	ENSGT00390000007747 #17	ENSGT00940000156039 #20	ENSGT00390000002793 #21	ENSGT00390000018003.b #22	ENSGT00970000193562	ENSGT00390000008702 #24	ENSGT00390000014557 #25	ENSGT00940000153544.b #28	ENSGT00940000160423 #29	ENSGT00940000153380.A #30	ENSGT00390000018322 #26	ENSGT01050000244951.a.a #31	ENSGT00390000005178 #32	ENSGT00390000003443 #33	ENSGT00940000153377.C #34	ENSGT00940000160124 #35	ENSGT00390000004933 #36	ENSGT00390000015899 #37	ENSGT00390000006367.c
Lagomorpha	ANCESTRAL SPECIES	27	ENSGT00390000000212	ENSGT00950000182939.b.a.b	ENSGT00940000156122	ENSGT00390000009532.A.d.a	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182839.B.a.a #15	ENSGT00940000161014 #16	ENSGT00390000007747 #17	ENSGT00940000156039 #20	ENSGT00390000002793 #21	ENSGT00970000193562	ENSGT00390000018003.b #22	ENSGT00390000008702 #24	ENSGT00390000014557 #25	ENSGT00940000153544.b #28	ENSGT00940000160423 #29	ENSGT00940000153380.A #30	ENSGT00390000018322 #26	ENSGT01050000244951.a.a #31	ENSGT00390000005178 #32	ENSGT00390000003443 #33	ENSGT00940000153377.C #34	ENSGT00940000160124 #35	ENSGT00390000004933 #36	ENSGT00390000015899 #37	ENSGT00390000006367.c	ENSGT00530000063113.A
Rabbit	MODERN SPECIES	19	ENSOCUG00000027097	SOX5 (ENSOCUG00000011479)	BCAT1 (ENSOCUG00000003963)	ENSOCUG00000038101	IRAG2 (ENSOCUG00000015956)	DNAI7 (ENSOCUG00000015984)	ETFRF1 (ENSOCUG00000012099)	KRAS (ENSOCUG00000012106)	LMNTD1 (ENSOCUG00000006725)	RASSF8 (ENSOCUG00000010737) #15	ENSOCUG00000032502 #16	SSPN (ENSOCUG00000010739) #17	ITPR2 (ENSOCUG00000010741) #20	INTS13 (ENSOCUG00000008328) #21	ENSOCUG00000038072	FGFR1OP2 (ENSOCUG00000008342) #22	TM7SF3 (ENSOCUG00000008344) #24	MED21 (ENSOCUG00000034587) #25	STK38L (ENSOCUG00000022781) #28	BMAL2 (ENSOCUG00000007097) #29	ENSOCUG00000016178 #30	ENSOCUG00000022613 #26	PPFIBP1 (ENSOCUG00000016191) #31	REP15 (ENSOCUG00000016210) #32	MRPS35 (ENSOCUG00000016214) #33	MANSC4 (ENSOCUG00000016228) #34	KLHL42 (ENSOCUG00000016233) #35	ENSOCUG00000021018	PTHLH (ENSOCUG00000013864) #36	CCDC91 (ENSOCUG00000029161) #37	ENSOCUG00000032847
Pika	MODERN SPECIES	240																ENSOPRG00000015499 #22
Rodentia	ANCESTRAL SPECIES	5	ENSGT01030000234535.D	ENSGT00390000000212	ENSGT00950000182939.b.a.b	ENSGT00940000156122	ENSGT00390000009532.A.d.a	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182839.B.a.a #15	ENSGT00940000161014 #16	ENSGT00390000007747 #17	ENSGT00940000156039 #20	ENSGT00390000002793 #21	ENSGT00390000018003.b #22	ENSGT00970000193562	ENSGT00390000008702 #24	ENSGT00390000014557 #25	ENSGT00940000153544.b #28	ENSGT00940000160423 #29	ENSGT00940000153380.A #30	ENSGT00390000018322 #26	ENSGT01050000244951.a.a #31	ENSGT00390000005178 #32	ENSGT00390000003443 #33	ENSGT00940000153377.C #34	ENSGT00940000160124 #35	ENSGT00390000004933 #36	ENSGT00390000015899 #37	ENSGT00390000006367.c
Rodentia_B	ANCESTRAL SPECIES	3	ENSGT01030000234535.D	ENSGT00390000000212	ENSGT00950000182939.b.a.b	ENSGT00940000156122	ENSGT00390000009532.A.d.a	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182839.B.a.a #15	ENSGT00940000161014 #16	ENSGT00390000007747 #17	ENSGT00940000156039 #20	ENSGT00390000002793 #21	ENSGT00390000018003.b #22	ENSGT00970000193562	ENSGT00390000008702 #24	ENSGT00390000014557 #25	ENSGT00940000153544.b #28	ENSGT00940000160423 #29	ENSGT00940000153380.A #30	ENSGT00390000018322 #26	ENSGT01050000244951.a.a #31	ENSGT00390000005178 #32	ENSGT00390000003443 #33	ENSGT00940000153377.C #34	ENSGT00940000160124 #35	ENSGT00390000004933 #36	ENSGT00390000015899 #37	ENSGT00390000006367.c
Myomorpha	ANCESTRAL SPECIES	15	ENSGT01030000234535.D	ENSGT00390000000212	ENSGT00950000182939.b.a.b	ENSGT00940000156122	ENSGT00390000009532.A.d.a	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182839.B.a.a #15	ENSGT00940000161014 #16	ENSGT00390000007747 #17	ENSGT00940000156039 #20	ENSGT00390000002793 #21	ENSGT00390000018003.b #22	ENSGT00970000193562	ENSGT00390000008702 #24	ENSGT00390000014557 #25	ENSGT00940000153544.b #28	ENSGT00940000160423 #29	ENSGT00940000153380.A #30	ENSGT00390000018322 #26	ENSGT01050000244951.a.a #31	ENSGT00390000005178 #32	ENSGT00390000003443 #33	ENSGT00940000153377.C #34	ENSGT00940000160124 #35	ENSGT00390000004933 #36	ENSGT00390000015899 #37	ENSGT00390000006367.c
Muroidea	ANCESTRAL SPECIES	24	ENSGT01030000234535.D	ENSGT00390000000212	ENSGT00950000182939.b.a.b	ENSGT00940000156122	ENSGT00390000009532.A.d.a	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182839.B.a.a #15	ENSGT00940000161014 #16	ENSGT00390000007747 #17	ENSGT00940000156039 #20	ENSGT00390000002793 #21	ENSGT00390000018003.b #22	ENSGT00970000193562	ENSGT00390000008702 #24	ENSGT00390000014557 #25	ENSGT00940000153544.b #28	ENSGT00940000160423 #29	ENSGT00940000153380.A #30	ENSGT00390000018322 #26	ENSGT01050000244951.a.a #31	ENSGT00390000005178 #32	ENSGT00390000003443 #33	ENSGT00940000153377.C #34	ENSGT00940000160124 #35	ENSGT00390000004933 #36	ENSGT00390000015899 #37	ENSGT00390000006367.c
Muroidea_A	ANCESTRAL SPECIES	4	ENSGT00390000000212	ENSGT00950000182939.b.a.b	ENSGT00940000156122	ENSGT00390000009532.A.d.a	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182825.B	ENSGT00950000182839.B.a.a #15	ENSGT00940000161014 #16	ENSGT00390000007747 #17	ENSGT00940000156039 #20	ENSGT00390000002793 #21	ENSGT00390000018003.b #22	ENSGT00970000193562	ENSGT00390000008702 #24	ENSGT00390000014557 #25	ENSGT00940000153544.b #28	ENSGT00940000160423 #29	ENSGT00940000153380.A #30	ENSGT00390000018322 #26	ENSGT01050000244951.a.a #31	ENSGT00390000005178 #32	ENSGT00390000003443 #33	ENSGT00940000153377.C #34	ENSGT00940000160124 #35	ENSGT00390000004933 #36	ENSGT00390000015899 #37	ENSGT00390000006367.c
Cricetidae	ANCESTRAL SPECIES	3	ENSGT00390000000212	ENSGT00950000182939.b.a.b	ENSGT00940000156122	ENSGT00390000009532.A.d.a	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182825.B	ENSGT00950000182839.B.a.a #15	ENSGT00940000161014 #16	ENSGT00390000007747.l #17	ENSGT00940000156039 #20	ENSGT00390000002793 #21	ENSGT00390000018003.b #22	ENSGT00970000193562	ENSGT00390000008702 #24	ENSGT00390000014557 #25	ENSGT00940000153544.b #28	ENSGT00940000160423 #29	ENSGT00940000153380.A #30	ENSGT00390000018322 #26	ENSGT01050000244951.a.a #31	ENSGT00390000005178 #32	ENSGT00390000003443 #33	ENSGT00940000153377.C #34	ENSGT00940000160124 #35	ENSGT00390000004933 #36	ENSGT00390000015899 #37	ENSGT00390000006367.c
Cricetidae_B	ANCESTRAL SPECIES	14	ENSGT00390000000212	ENSGT00950000182939.b.a.b	ENSGT00940000156122	ENSGT00390000009532.A.d.a	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182825.B	ENSGT00950000182839.B.a.a #15	ENSGT00940000161014 #16	ENSGT00390000007747.l #17	ENSGT00940000156039 #20	ENSGT00390000002793 #21	ENSGT00390000018003.b #22	ENSGT00970000193562	ENSGT00390000008702 #24	ENSGT00390000014557 #25	ENSGT00940000153544.b #28	ENSGT00940000160423 #29	ENSGT00940000153380.A #30	ENSGT00390000018322 #26	ENSGT01050000244951.a.a #31	ENSGT00390000005178 #32	ENSGT00390000003443 #33	ENSGT00940000153377.C #34	ENSGT00940000160124 #35	ENSGT00390000004933 #36	ENSGT00390000015899 #37	ENSGT00390000006367.c
Northern American deer mouse	MODERN SPECIES	16	C2cd5 (ENSPEMG00000007233)	Etnk1 (ENSPEMG00000022752)	Sox5 (ENSPEMG00000002152)	Bcat1 (ENSPEMG00000023771)	Irag2 (ENSPEMG00000023409)	Casc1 (ENSPEMG00000008126)	Etfrf1 (ENSPEMG00000023976)	Kras (ENSPEMG00000025855)	Lmntd1 (ENSPEMG00000014844)	ENSPEMG00000028173	Rassf8 (ENSPEMG00000007472) #15	Bhlhe41 (ENSPEMG00000008096) #16	Sspn (ENSPEMG00000028151) #17	Itpr2 (ENSPEMG00000015317) #20	Ints13 (ENSPEMG00000005292) #21	Fgfr1op2 (ENSPEMG00000020963) #22	ENSPEMG00000025563	Tm7sf3 (ENSPEMG00000023529) #24	Med21 (ENSPEMG00000008474) #25	Stk38l (ENSPEMG00000021788) #28	Arntl2 (ENSPEMG00000020386) #29	Smco2 (ENSPEMG00000012053) #30	1700034J05Rik (ENSPEMG00000027073) #26	Ppfibp1 (ENSPEMG00000009235) #31	Rep15 (ENSPEMG00000001876) #32	Mrps35 (ENSPEMG00000005515) #33	Mansc4 (ENSPEMG00000020408) #34	Klhl42 (ENSPEMG00000025004) #35	Pthlh (ENSPEMG00000022898) #36	Ccdc91 (ENSPEMG00000013667) #37	ENSPEMG00000015054
Prairie vole	MODERN SPECIES	82	C2cd5 (ENSMOCG00000005597)	Etnk1 (ENSMOCG00000015568)	Sox5 (ENSMOCG00000003982)	Bcat1 (ENSMOCG00000018342)	Irag2 (ENSMOCG00000001897)	Casc1 (ENSMOCG00000010336)	Etfrf1 (ENSMOCG00000000926)	Kras (ENSMOCG00000011313)	Lmntd1 (ENSMOCG00000008486)	ENSMOCG00000016727	Rassf8 (ENSMOCG00000017540) #15	Bhlhe41 (ENSMOCG00000002571) #16	Sspn (ENSMOCG00000014308) #17	Itpr2 (ENSMOCG00000001208) #20	Ints13 (ENSMOCG00000001190) #21	Fgfr1op2 (ENSMOCG00000009226) #22	Tm7sf3 (ENSMOCG00000018940) #24	Med21 (ENSMOCG00000010866) #25	Stk38l (ENSMOCG00000005424) #28	Arntl2 (ENSMOCG00000019503) #29	Smco2 (ENSMOCG00000012704) #30	1700034J05Rik (ENSMOCG00000009791) #26	ENSMOCG00000014471	ENSMOCG00000010996 ##31	ENSMOCG00000021752 #31	Rep15 (ENSMOCG00000022601) #32	Mrps35 (ENSMOCG00000000925) #33	ENSMOCG00000002568 #34	Klhl42 (ENSMOCG00000007352) #35	Pthlh (ENSMOCG00000022411) #36	Ccdc91 (ENSMOCG00000019216) #37
Cricetinae	ANCESTRAL SPECIES	32	ENSGT01030000234535.D	ENSGT00390000000212	ENSGT00950000182939.b.a.b	ENSGT00940000156122	ENSGT00390000009532.A.d.a	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182839.B.a.a #15	ENSGT00940000161014 #16	ENSGT00390000007747.l #17	ENSGT00940000156039 #20	ENSGT00390000002793 #21	ENSGT00390000018003.b #22	ENSGT00390000008702 #24	ENSGT00390000014557 #25	ENSGT00940000153544.b #28	ENSGT00940000160423 #29	ENSGT00940000153380.A #30	ENSGT00390000018322 #26	ENSGT01050000244951.a.a #31	ENSGT00390000005178 #32	ENSGT00390000003443 #33	ENSGT00940000153377.C #34	ENSGT00940000160124 #35	ENSGT00390000004933 #36	ENSGT00390000015899 #37	ENSGT00390000006367.c	ENSGT00530000063113.A
Golden Hamster	MODERN SPECIES	653	St8sia1 (ENSMAUG00000010851)	C2cd5 (ENSMAUG00000012466)	Etnk1 (ENSMAUG00000002984)	Sox5 (ENSMAUG00000010173)	Bcat1 (ENSMAUG00000011499)	Irag2 (ENSMAUG00000019896)	Casc1 (ENSMAUG00000002903)	Etfrf1 (ENSMAUG00000016742)	Kras (ENSMAUG00000017232)	ENSMAUG00000020897	ENSMAUG00000010609 #15	ENSMAUG00000015512 #16	Itpr2 (ENSMAUG00000012727) #20	ENSMAUG00000018663	Ints13 (ENSMAUG00000002411) #21	Fgfr1op2 (ENSMAUG00000011732) #22	Tm7sf3 (ENSMAUG00000014859) #24	ENSMAUG00000019929 #25	Stk38l (ENSMAUG00000002721) #28	Arntl2 (ENSMAUG00000015279) #29	Smco2 (ENSMAUG00000011476) #30	ENSMAUG00000012620 #31	ENSMAUG00000020104 #31	Pthlh (ENSMAUG00000016105) #36	Ccdc91 (ENSMAUG00000013545) #37	Far2 (ENSMAUG00000017825)	Ergic2 (ENSMAUG00000007255)	Tmtc1 (ENSMAUG00000012612)	ENSMAUG00000009532	Ipo8 (ENSMAUG00000011526)	Caprin2 (ENSMAUG00000008195)
Chinese hamster chok1gshd	MODERN SPECIES	225	C2cd5 (ENSCGRG00001021395)	Etnk1 (ENSCGRG00001015598)	Sox5 (ENSCGRG00001014221)	Bcat1 (ENSCGRG00001011881)	Irag2 (ENSCGRG00001010745)	Casc1 (ENSCGRG00001009857)	ENSCGRG00001007087	ENSCGRG00001006529	Lmntd1 (ENSCGRG00001004513)	ENSCGRG00001001500	Rassf8 (ENSCGRG00001000661) #15	Bhlhe41 (ENSCGRG00001000097) #16	Sspn (ENSCGRG00001023564) #17	Itpr2 (ENSCGRG00001022595) #20	Ints13 (ENSCGRG00001017512) #21	Fgfr1op2 (ENSCGRG00001017121) #22	Tm7sf3 (ENSCGRG00001016691) #24	Med21 (ENSCGRG00001016121) #25	Stk38l (ENSCGRG00001006809) #28	Arntl2 (ENSCGRG00001003351) #29	Smco2 (ENSCGRG00001000723) #30	1700034J05Rik (ENSCGRG00001000357) #26	Ppfibp1 (ENSCGRG00001020798) #31	Rep15 (ENSCGRG00001015483) #32	Mrps35 (ENSCGRG00001019645) #33	ENSCGRG00001019034 #34	Klhl42 (ENSCGRG00001018708) #35	Pthlh (ENSCGRG00001018338) #36	Ccdc91 (ENSCGRG00001017789) #37
Murinae	ANCESTRAL SPECIES	4	ENSGT00390000000212	ENSGT00950000182939.b.a.b	ENSGT00940000156122	ENSGT00390000009532.A.d.a	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182825.B	ENSGT00950000182839.B.a.a #15	ENSGT00940000161014 #16	ENSGT00390000007747 #17	ENSGT00940000156039 #20	ENSGT00390000002793 #21	ENSGT00390000018003.b #22	ENSGT00390000008702 #24	ENSGT00390000014557 #25	ENSGT00940000153544.b #28	ENSGT00940000160423 #29	ENSGT00940000153380.A #30	ENSGT00390000018322 #26	ENSGT01050000244951.a.a #31	ENSGT00390000005178 #32	ENSGT00390000003443 #33	ENSGT00940000153377.C #34	ENSGT00940000160124 #35	ENSGT00390000004933 #36	ENSGT00390000015899 #37	ENSGT00390000006367.c	ENSGT00530000063113.A
Mus	ANCESTRAL SPECIES	12	ENSGT00390000000212	ENSGT00950000182939.b.a.b	ENSGT00940000156122	ENSGT00390000009532.A.d.a	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182825.B	ENSGT00950000182839.B.a.a #15	ENSGT00940000161014 #16	ENSGT00390000007747 #17	ENSGT00940000156039 #20	ENSGT00390000002793 #21	ENSGT00390000018003.b #22	ENSGT00390000008702 #24	ENSGT00390000014557 #25	ENSGT00940000153544.b #28	ENSGT00940000160423 #29	ENSGT00940000153380.A #30	ENSGT00390000018322 #26	ENSGT01050000244951.a.a #31	ENSGT00390000005178 #32	ENSGT00390000003443 #33	ENSGT00940000153377.C #34	ENSGT00940000160124 #35	ENSGT00390000004933 #36	ENSGT00390000015899 #37	ENSGT00390000006367.c	ENSGT00530000063113.A
Mus_A	ANCESTRAL SPECIES	7	ENSGT00390000000212	ENSGT00950000182939.b.a.b	ENSGT00940000156122	ENSGT00390000009532.A.d.a	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182825.B	ENSGT00950000182839.B.a.a #15	ENSGT00940000161014 #16	ENSGT00390000007747 #17	ENSGT00940000156039 #20	ENSGT00390000002793 #21	ENSGT00390000018003.b #22	ENSGT00390000008702 #24	ENSGT00390000014557 #25	ENSGT00940000153544.b #28	ENSGT00940000160423 #29	ENSGT00940000153380.A #30	ENSGT00390000018322 #26	ENSGT01050000244951.a.a #31	ENSGT00390000005178 #32	ENSGT00390000003443 #33	ENSGT00940000153377.C #34	ENSGT00940000160124 #35	ENSGT00390000004933 #36	ENSGT00390000015899 #37	ENSGT00390000006367.c	ENSGT00530000063113.A
Ryukyu mouse	MODERN SPECIES	15	C2cd5 (MGP_CAROLIEiJ_G0029040)	Etnk1 (MGP_CAROLIEiJ_G0029041)	Sox5 (MGP_CAROLIEiJ_G0029042)	Bcat1 (MGP_CAROLIEiJ_G0029043)	Irag2 (MGP_CAROLIEiJ_G0029044)	Casc1 (MGP_CAROLIEiJ_G0029045)	Etfrf1 (MGP_CAROLIEiJ_G0029046)	Kras (MGP_CAROLIEiJ_G0029047)	Lmntd1 (MGP_CAROLIEiJ_G0029048)	MGP_CAROLIEiJ_G0029049	Rassf8 (MGP_CAROLIEiJ_G0029050) #15	Bhlhe41 (MGP_CAROLIEiJ_G0029051) #16	Sspn (MGP_CAROLIEiJ_G0029052) #17	Itpr2 (MGP_CAROLIEiJ_G0029053) #20	Ints13 (MGP_CAROLIEiJ_G0029054) #21	Fgfr1op2 (MGP_CAROLIEiJ_G0029055) #22	Tm7sf3 (MGP_CAROLIEiJ_G0029056) #24	Med21 (MGP_CAROLIEiJ_G0029057) #25	Stk38l (MGP_CAROLIEiJ_G0029058) #28	Arntl2 (MGP_CAROLIEiJ_G0029059) #29	Smco2 (MGP_CAROLIEiJ_G0029060) #30	Ppfibp1 (MGP_CAROLIEiJ_G0029061) #31	1700034J05Rik (MGP_CAROLIEiJ_G0029062) #26	Rep15 (MGP_CAROLIEiJ_G0029063) #32	Mrps35 (MGP_CAROLIEiJ_G0029064) #33	Mansc4 (MGP_CAROLIEiJ_G0029065) #34	Klhl42 (MGP_CAROLIEiJ_G0029066) #35	Pthlh (MGP_CAROLIEiJ_G0029067) #36	Ccdc91 (MGP_CAROLIEiJ_G0029068) #37	Far2 (MGP_CAROLIEiJ_G0029069)	Ergic2 (MGP_CAROLIEiJ_G0029070)
Mus_B	ANCESTRAL SPECIES	15	ENSGT01030000234535.D	ENSGT00390000000212	ENSGT00950000182939.b.a.b	ENSGT00940000156122	ENSGT00390000009532.A.d.a	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182839.B.a.a #15	ENSGT00940000161014 #16	ENSGT00390000007747 #17	ENSGT00940000156039 #20	ENSGT00390000002793 #21	ENSGT00390000018003.b #22	ENSGT00390000008702 #24	ENSGT00390000014557 #25	ENSGT00940000153544.b #28	ENSGT00940000160423 #29	ENSGT00940000153380.A #30	ENSGT00390000018322 #26	ENSGT01050000244951.a.a #31	ENSGT00390000005178 #32	ENSGT00390000003443 #33	ENSGT00940000153377.C #34	ENSGT00940000160124 #35	ENSGT00390000004933 #36	ENSGT00390000015899 #37	ENSGT00390000006367.c	ENSGT00530000063113.A
Mus_C	ANCESTRAL SPECIES	29	ENSGT01030000234535.D	ENSGT00390000000212	ENSGT00950000182939.b.a.b	ENSGT00940000156122	ENSGT00390000009532.A.d.a	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182839.B.a.a #15	ENSGT00940000161014 #16	ENSGT00390000007747 #17	ENSGT00940000156039 #20	ENSGT00390000002793 #21	ENSGT00390000018003.b #22	ENSGT00390000008702 #24	ENSGT00390000014557 #25	ENSGT00940000153544.b #28	ENSGT00940000160423 #29	ENSGT00940000153380.A #30	ENSGT00390000018322 #26	ENSGT01050000244951.a.a #31	ENSGT00390000005178 #32	ENSGT00390000003443 #33	ENSGT00940000153377.C #34	ENSGT00940000160124 #35	ENSGT00390000004933 #36	ENSGT00390000015899 #37	ENSGT00390000006367.c	ENSGT00530000063113.A
spretus	MODERN SPECIES	15	C2cd5 (MGP_SPRETEiJ_G0030095)	Etnk1 (MGP_SPRETEiJ_G0030096)	Sox5 (MGP_SPRETEiJ_G0030097)	Bcat1 (MGP_SPRETEiJ_G0030098)	Irag2 (MGP_SPRETEiJ_G0030099)	Casc1 (MGP_SPRETEiJ_G0030100)	Etfrf1 (MGP_SPRETEiJ_G0030101)	Kras (MGP_SPRETEiJ_G0030102)	Lmntd1 (MGP_SPRETEiJ_G0030103)	MGP_SPRETEiJ_G0030104	Rassf8 (MGP_SPRETEiJ_G0030105) #15	Bhlhe41 (MGP_SPRETEiJ_G0030106) #16	Sspn (MGP_SPRETEiJ_G0030107) #17	Itpr2 (MGP_SPRETEiJ_G0030108) #20	Ints13 (MGP_SPRETEiJ_G0030109) #21	Fgfr1op2 (MGP_SPRETEiJ_G0030110) #22	Tm7sf3 (MGP_SPRETEiJ_G0030111) #24	Med21 (MGP_SPRETEiJ_G0030112) #25	Stk38l (MGP_SPRETEiJ_G0030113) #28	MGP_SPRETEiJ_G0030114 #29	MGP_SPRETEiJ_G0030115 #30	Ppfibp1 (MGP_SPRETEiJ_G0030116) #31	1700034J05Rik (MGP_SPRETEiJ_G0030117) #26	Rep15 (MGP_SPRETEiJ_G0030118) #32	Mrps35 (MGP_SPRETEiJ_G0030119) #33	Mansc4 (MGP_SPRETEiJ_G0030120) #34	Klhl42 (MGP_SPRETEiJ_G0030121) #35	Pthlh (MGP_SPRETEiJ_G0030122) #36	Ccdc91 (MGP_SPRETEiJ_G0030123) #37	Far2 (MGP_SPRETEiJ_G0030124)	Ergic2 (MGP_SPRETEiJ_G0030125)
Steppe mouse	MODERN SPECIES	3307					Bcat1 (ENSMSIG00000015197)	Irag2 (ENSMSIG00000015111)	Etfrf1 (ENSMSIG00000015086)	Casc1 (ENSMSIG00000014840)	Lmntd1 (ENSMSIG00000014721)	ENSMSIG00000014710	Rassf8 (ENSMSIG00000014654) #15	Bhlhe41 (ENSMSIG00000014616) #16	Sspn (ENSMSIG00000014591) #17	Itpr2 (ENSMSIG00000014319) #20	Ints13 (ENSMSIG00000014265) #21	Fgfr1op2 (ENSMSIG00000014213) #22	Tm7sf3 (ENSMSIG00000014187) #24	Med21 (ENSMSIG00000014163) #25	Stk38l (ENSMSIG00000014111) #28	ENSMSIG00000014103	Arntl2 (ENSMSIG00000013962) #29	ENSMSIG00000013947 #30	1700034J05Rik (ENSMSIG00000013928) #26	Ppfibp1 (ENSMSIG00000013677) #31	Rep15 (ENSMSIG00000013652) #32	Mrps35 (ENSMSIG00000013626) #33	Mansc4 (ENSMSIG00000013606) #34	ENSMSIG00000013586 #35	Pthlh (ENSMSIG00000013526) #36	ENSMSIG00000013505	Ccdc91 (ENSMSIG00000013458) #37
Mouse	MODERN SPECIES	15	C2cd5 (ENSMUSG00000030279)	Etnk1 (ENSMUSG00000030275)	Sox5 (ENSMUSG00000041540)	Bcat1 (ENSMUSG00000030268)	Irag2 (ENSMUSG00000030263)	Casc1 (ENSMUSG00000043541)	Etfrf1 (ENSMUSG00000040370)	Kras (ENSMUSG00000030265)	Lmntd1 (ENSMUSG00000054966)	Tuba3b (ENSMUSG00000067338)	Rassf8 (ENSMUSG00000030259) #15	Bhlhe41 (ENSMUSG00000030256) #16	Sspn (ENSMUSG00000030255) #17	Itpr2 (ENSMUSG00000030287) #20	Ints13 (ENSMUSG00000040250) #21	Fgfr1op2 (ENSMUSG00000040242) #22	Tm7sf3 (ENSMUSG00000040234) #24	Med21 (ENSMUSG00000030291) #25	Stk38l (ENSMUSG00000001630) #28	Arntl2 (ENSMUSG00000040187) #29	Smco2 (ENSMUSG00000030292) #30	Ppfibp1 (ENSMUSG00000016487) #31	1700034J05Rik (ENSMUSG00000040163) #26	Rep15 (ENSMUSG00000040121) #32	Mrps35 (ENSMUSG00000040112) #33	Mansc4 (ENSMUSG00000072662) #34	Klhl42 (ENSMUSG00000040102) #35	Pthlh (ENSMUSG00000048776) #36	Ccdc91 (ENSMUSG00000030301) #37	Far2 (ENSMUSG00000030303)	Ergic2 (ENSMUSG00000030304)
Shrew mouse	MODERN SPECIES	11	Etnk1 (MGP_PahariEiJ_G0022802)	Sox5 (MGP_PahariEiJ_G0022803)	Bcat1 (MGP_PahariEiJ_G0022804)	MGP_PahariEiJ_G0022805	Casc1 (MGP_PahariEiJ_G0022806)	Etfrf1 (MGP_PahariEiJ_G0022807)	Kras (MGP_PahariEiJ_G0022808)	Lmntd1 (MGP_PahariEiJ_G0022809)	Tuba3b (MGP_PahariEiJ_G0022810)	MGP_PahariEiJ_G0022811	Rassf8 (MGP_PahariEiJ_G0022812) #15	Bhlhe41 (MGP_PahariEiJ_G0022813) #16	Sspn (MGP_PahariEiJ_G0022814) #17	Itpr2 (MGP_PahariEiJ_G0022815) #20	Ints13 (MGP_PahariEiJ_G0022816) #21	MGP_PahariEiJ_G0022817 #22	Tm7sf3 (MGP_PahariEiJ_G0022818) #24	Med21 (MGP_PahariEiJ_G0022819) #25	Stk38l (MGP_PahariEiJ_G0022820) #28	Smco2 (MGP_PahariEiJ_G0022821) #30	Ppfibp1 (MGP_PahariEiJ_G0022822) #31	1700034J05Rik (MGP_PahariEiJ_G0022823) #26	Rep15 (MGP_PahariEiJ_G0022824) #32	MGP_PahariEiJ_G0022825 #33	Mansc4 (MGP_PahariEiJ_G0022826) #34	Klhl42 (MGP_PahariEiJ_G0022827) #35	Pthlh (MGP_PahariEiJ_G0022828) #36	Ccdc91 (MGP_PahariEiJ_G0022829) #37	Far2 (MGP_PahariEiJ_G0022830)	Ergic2 (MGP_PahariEiJ_G0022831)	Tmtc1 (MGP_PahariEiJ_G0022832)
Rat	MODERN SPECIES	14	ENSRNOG00000063999	Sox5 (ENSRNOG00000027869)	AABR07062466.1 (ENSRNOG00000033855)	Bcat1 (ENSRNOG00000015514)	Irag2 (ENSRNOG00000029308)	Dnai7 (ENSRNOG00000027630)	Etfrf1 (ENSRNOG00000063524)	ENSRNOG00000069406	Lmntd1 (ENSRNOG00000015910)	Tuba3a (ENSRNOG00000032967)	Rassf8 (ENSRNOG00000015986) #15	Bhlhe41 (ENSRNOG00000048961) #16	Sspn (ENSRNOG00000001807) #17	Itpr2 (ENSRNOG00000001804) #20	Ints13 (ENSRNOG00000001808) #21	Fgfr1op2 (ENSRNOG00000001811) #22	Tm7sf3 (ENSRNOG00000001817) #24	Med21 (ENSRNOG00000001820) #25	Stk38l (ENSRNOG00000001828) #28	Bmal2 (ENSRNOG00000001830) #29	Smco2 (ENSRNOG00000026883) #30	Ppfibp1 (ENSRNOG00000031709) #31	C4h12orf71 (ENSRNOG00000026864) #26	Rep15 (ENSRNOG00000001840) #32	Mrps35 (ENSRNOG00000001842) #33	Mansc4 (ENSRNOG00000036925) #34	Klhl42 (ENSRNOG00000001844) #35	AABR07062539.1 (ENSRNOG00000051667)	Pthlh (ENSRNOG00000069267) #36	Ccdc91 (ENSRNOG00000001847) #37	ENSRNOG00000064845
Upper Galilee mountains blind mole rat	DUPLICATION
Upper Galilee mountains blind mole rat	MODERN SPECIES	1351				Hpse (ENSNGAG00000018587)	Coq2 (ENSNGAG00000000054)	Plac8 (ENSNGAG00000000532)	Cops4 (ENSNGAG00000005820)	ENSNGAG00000006175	Lin54 (ENSNGAG00000010863)	ENSNGAG00000011892	ENSNGAG00000014734	Tmem150c (ENSNGAG00000014973)	Enoph1 (ENSNGAG00000015500)	Hnrnpdl (ENSNGAG00000015740)	Ints13 (ENSNGAG00000016180) #21	ENSNGAG00000016575 #22	Tm7sf3 (ENSNGAG00000018407) #24	Med21 (ENSNGAG00000000342) #25	Stk38l (ENSNGAG00000010154) #28	Arntl2 (ENSNGAG00000018456) #29	Smco2 (ENSNGAG00000010804) #30	ENSNGAG00000009115	ENSNGAG00000009391 #31	ENSNGAG00000010515 #31	Rep15 (ENSNGAG00000014414) #32	Mrps35 (ENSNGAG00000000169) #33	Mansc4 (ENSNGAG00000000524) #34	Klhl42 (ENSNGAG00000000726) #35	Pthlh (ENSNGAG00000001395) #36	Ccdc91 (ENSNGAG00000007042) #37
Upper Galilee mountains blind mole rat	MODERN SPECIES	639															ENSNGAG00000006736	ENSNGAG00000015733 #22
Lesser Egyptian jerboa	DUPLICATION
Lesser Egyptian jerboa	MODERN SPECIES	111	C2cd5 (ENSJJAG00000022968)	Etnk1 (ENSJJAG00000007821)	Sox5 (ENSJJAG00000011054)	Bcat1 (ENSJJAG00000012001)	Irag2 (ENSJJAG00000012617)	Casc1 (ENSJJAG00000013952)	Etfrf1 (ENSJJAG00000015972)	Kras (ENSJJAG00000016513)	Tuba3b (ENSJJAG00000017028)	ENSJJAG00000013495	ENSJJAG00000017775 #15	ENSJJAG00000017871 #16	Sspn (ENSJJAG00000018160) #17	Itpr2 (ENSJJAG00000000125) #20	Ints13 (ENSJJAG00000013125) #21	ENSJJAG00000014242 #22	Tm7sf3 (ENSJJAG00000014434) #24	ENSJJAG00000014822	Smco3 (ENSJJAG00000013764)	Art4 (ENSJJAG00000015150)	Mgp (ENSJJAG00000015199)	Erp27 (ENSJJAG00000015603)	Arhgdib (ENSJJAG00000015854)	Pde6h (ENSJJAG00000016082)	Rerg (ENSJJAG00000016255)	Ptpro (ENSJJAG00000018100)	Eps8 (ENSJJAG00000015869)	Strap (ENSJJAG00000017293)	Dera (ENSJJAG00000017995)	Slc15a5 (ENSJJAG00000018936)	Mgst1 (ENSJJAG00000019123)
Lesser Egyptian jerboa	MODERN SPECIES	49	Mturn (ENSJJAG00000019476)	ENSJJAG00000018369	Nod1 (ENSJJAG00000010878)	Ggct (ENSJJAG00000014364)	Gars (ENSJJAG00000022474)	Crhr2 (ENSJJAG00000023470)	Mindy4 (ENSJJAG00000024172)	Aqp1 (ENSJJAG00000017823)	Ghrhr (ENSJJAG00000007770)	Adcyap1r1 (ENSJJAG00000016559)	Neurod6 (ENSJJAG00000018349)	ENSJJAG00000000900	ENSJJAG00000012458	Ppp1r17 (ENSJJAG00000015397)	Pde1c (ENSJJAG00000023334)	ENSJJAG00000014802 #22	Lsm5 (ENSJJAG00000012145)	ENSJJAG00000020256	Kbtbd2 (ENSJJAG00000017181)	ENSJJAG00000018184	ENSJJAG00000000509	ENSJJAG00000009194	Fkbp9 (ENSJJAG00000010780)	ENSJJAG00000024110	ENSJJAG00000010711	Mustn1 (ENSJJAG00000012139)	Stimate (ENSJJAG00000012243)	Sfmbt1 (ENSJJAG00000017138)	Rft1 (ENSJJAG00000022919)	ENSJJAG00000020100	Prkcd (ENSJJAG00000018835)
Kangaroo rat	DUPLICATION
Kangaroo rat	MODERN SPECIES	488																ENSDORG00000007729 #22	ENSDORG00000014647	ENSDORG00000025328	ENSDORG00000027433	Syt10 (ENSDORG00000000019)	ENSDORG00000009982	Alg10b (ENSDORG00000003470)	Cpne8 (ENSDORG00000012517)	Kif21a (ENSDORG00000002550)	Abcd2 (ENSDORG00000003158)	Slc2a13 (ENSDORG00000027685)
Kangaroo rat	MODERN SPECIES	616															Ints13 (ENSDORG00000012904) #21	ENSDORG00000024769 #22	ENSDORG00000024109
Rodentia_A	ANCESTRAL SPECIES	4	ENSGT01030000234535.D	ENSGT00390000000212	ENSGT00950000182939.b.a.b	ENSGT00940000156122	ENSGT00390000009532.A.d.a	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182839.B.a.a #15	ENSGT00940000161014 #16	ENSGT00390000007747 #17	ENSGT00940000156039 #20	ENSGT00390000002793 #21	ENSGT00390000018003.b #22	ENSGT00970000193562	ENSGT00390000008702 #24	ENSGT00390000014557 #25	ENSGT00940000153544.b #28	ENSGT00940000160423 #29	ENSGT00940000153380.A #30	ENSGT00390000018322 #26	ENSGT01050000244951.a.a #31	ENSGT00390000005178 #32	ENSGT00390000003443 #33	ENSGT00940000153377.C #34	ENSGT00940000160124 #35	ENSGT00390000004933 #36	ENSGT00390000015899 #37	ENSGT00390000006367.c
Hystricomorpha	ANCESTRAL SPECIES	13	ENSGT00390000000212	ENSGT00950000182939.b.a.b	ENSGT00940000156122	ENSGT00390000009532.A.d.a	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182839.B.a.a #15	ENSGT00940000161014 #16	ENSGT00390000007747 #17	ENSGT00940000156039 #20	ENSGT00390000002793 #21	ENSGT00970000193562	ENSGT00390000018003.b #22	ENSGT00390000008702 #24	ENSGT00390000014557 #25	ENSGT01030000234599.a.a.a.a.j.a	ENSGT01030000234599.a.a.a.a.i	ENSGT00940000157534	ENSGT01030000234599.a.a.b.k.b.a	ENSGT01030000234599.a.a.b.l	ENSGT00940000155632	ENSGT00530000064086	ENSGT00640000091519	ENSGT00390000002667.w.b	ENSGT01050000244893.c.a.b	ENSGT00870000136549	ENSGT00940000159653	ENSGT00510000048561
Naked mole-rat female	DUPLICATION
Naked mole-rat female	MODERN SPECIES	24	ENSHGLG00000039682	SOX5 (ENSHGLG00000016643)	ENSHGLG00000044797	LRMP (ENSHGLG00000017644)	DNAI7 (ENSHGLG00000017827)	ENSHGLG00000042649	KRAS (ENSHGLG00000008775)	LMNTD1 (ENSHGLG00000005502)	ENSHGLG00000034920	RASSF8 (ENSHGLG00000036200) #15	BHLHE41 (ENSHGLG00000036794) #16	SSPN (ENSHGLG00000041411) #17	ITPR2 (ENSHGLG00000018135) #20	INTS13 (ENSHGLG00000010176) #21	ENSHGLG00000041655	ENSHGLG00000044032 #22	ENSHGLG00000013061 #24	ENSHGLG00000013417 #25	ENSHGLG00000017237	ENSHGLG00000016022	ENSHGLG00000015154	RBFOX2 (ENSHGLG00000046566)	ENSHGLG00000037416	ENSHGLG00000016798	ENSHGLG00000037252	ENSHGLG00000040589	ENSHGLG00000032964	TXN2 (ENSHGLG00000016755)	FOXRED2 (ENSHGLG00000012859)	ENSHGLG00000016422	CACNG2 (ENSHGLG00000046431)
Naked mole-rat female	MODERN SPECIES	1	GPT (ENSHGLG00000016310)	MFSD3 (ENSHGLG00000047371)	RECQL4 (ENSHGLG00000015925)	LRRC14 (ENSHGLG00000040950)	LRRC24 (ENSHGLG00000009883)	C8orf82 (ENSHGLG00000009700)	ARHGAP39 (ENSHGLG00000007635)	ENSHGLG00000012998	ENSHGLG00000005532	ENSHGLG00000009858	RPL8 (ENSHGLG00000039508)	ENSHGLG00000014023	ENSHGLG00000038883	ENSHGLG00000016936	ENSHGLG00000043250	ENSHGLG00000048968 #22	ENSHGLG00000046285	ENSHGLG00000038076	ENSHGLG00000015120	ENSHGLG00000016312	ENSHGLG00000017220	ENSHGLG00000010206	FBXL14 (ENSHGLG00000018846)	WNT5B (ENSHGLG00000018867)	ADIPOR2 (ENSHGLG00000018584)	CACNA2D4 (ENSHGLG00000009530)	LRTM2 (ENSHGLG00000015685)	DCP1B (ENSHGLG00000019233)	ENSHGLG00000015597	ENSHGLG00000037716	ENSHGLG00000020936
Hystricomorpha_a	ANCESTRAL SPECIES	6	ENSGT01030000234535.D	ENSGT00390000000212	ENSGT00950000182939.b.a.b	ENSGT00940000156122	ENSGT00390000009532.A.d.a	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182839.B.a.a #15	ENSGT00940000161014 #16	ENSGT00390000007747 #17	ENSGT00940000156039 #20	ENSGT00390000002793 #21	ENSGT00390000018003.b #22	ENSGT00390000008702 #24	ENSGT00390000014557 #25	ENSGT01030000234599.a.a.a.a.j.a	ENSGT01030000234599.a.a.a.a.i	ENSGT00940000157534	ENSGT01030000234599.a.a.b.k.b.a	ENSGT01030000234599.a.a.b.l	ENSGT00940000155632	ENSGT00530000064086	ENSGT00640000091519	ENSGT00390000002667.w.b	ENSGT01050000244893.c.a.b	ENSGT00870000136549	ENSGT00940000159653	ENSGT00510000048561
Guinea pig	MODERN SPECIES	28	ST8SIA1 (ENSCPOG00000037768)	C2CD5 (ENSCPOG00000002611)	ETNK1 (ENSCPOG00000007574)	SOX5 (ENSCPOG00000015686)	BCAT1 (ENSCPOG00000003203)	IRAG2 (ENSCPOG00000005690)	DNAI7 (ENSCPOG00000005699)	ETFRF1 (ENSCPOG00000010713)	KRAS (ENSCPOG00000030290)	RASSF8 (ENSCPOG00000033532) #15	ENSCPOG00000025122 #16	SSPN (ENSCPOG00000033259) #17	ITPR2 (ENSCPOG00000012462) #20	ENSCPOG00000021778	INTS13 (ENSCPOG00000014999) #21	FGFR1OP2 (ENSCPOG00000030323) #22	TM7SF3 (ENSCPOG00000015004) #24	MED21 (ENSCPOG00000015007) #25	ENSCPOG00000037222	ENSCPOG00000024603	RBFOX2 (ENSCPOG00000022180)	ENSCPOG00000000348	ENSCPOG00000040055	ENSCPOG00000038184	ENSCPOG00000010115	MYH9 (ENSCPOG00000000346)	TXN2 (ENSCPOG00000035993)	EIF3D (ENSCPOG00000002529)	FOXRED2 (ENSCPOG00000040491)	CACNG2 (ENSCPOG00000002533)	IFT27 (ENSCPOG00000021807)
Hystricomorpha_b	ANCESTRAL SPECIES	2	ENSGT01030000234535.D	ENSGT00390000000212	ENSGT00950000182939.b.a.b	ENSGT00940000156122	ENSGT00390000009532.A.d.a	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182839.B.a.a #15	ENSGT00940000161014 #16	ENSGT00390000007747 #17	ENSGT00940000156039 #20	ENSGT00390000002793 #21	ENSGT00390000018003.b #22	ENSGT00390000008702 #24	ENSGT00390000014557 #25	ENSGT00940000157534	ENSGT01030000234599.a.a.b.k.b.a	ENSGT01030000234599.a.a.b.k.a	ENSGT01030000234599.a.a.b.l	ENSGT00940000155632	ENSGT00530000064086	ENSGT00640000091519	ENSGT00390000002667.w.b	ENSGT01050000244893.c.a.b	ENSGT00870000136549	ENSGT00940000159653	ENSGT00510000048561	ENSGT00510000048963
Long-tailed chinchilla	MODERN SPECIES	120	ST8SIA1 (ENSCLAG00000016736)	C2CD5 (ENSCLAG00000016952)	ETNK1 (ENSCLAG00000015907)	SOX5 (ENSCLAG00000014641)	BCAT1 (ENSCLAG00000016654)	IRAG2 (ENSCLAG00000015233)	DNAI7 (ENSCLAG00000017034)	ETFRF1 (ENSCLAG00000016238)	KRAS (ENSCLAG00000016519)	RASSF8 (ENSCLAG00000015615) #15	ENSCLAG00000015603 #16	SSPN (ENSCLAG00000015681) #17	ITPR2 (ENSCLAG00000017155) #20	ENSCLAG00000016175	INTS13 (ENSCLAG00000015765) #21	FGFR1OP2 (ENSCLAG00000016939) #22	TM7SF3 (ENSCLAG00000017039) #24	MED21 (ENSCLAG00000016595) #25	RBFOX2 (ENSCLAG00000017106)	ENSCLAG00000016144	ENSCLAG00000015996	ENSCLAG00000014514	ENSCLAG00000015836	ENSCLAG00000015965	ENSCLAG00000016680	ENSCLAG00000016571	ENSCLAG00000016300	MYH9 (ENSCLAG00000015848)	TXN2 (ENSCLAG00000015616)	FOXRED2 (ENSCLAG00000016617)	EIF3D (ENSCLAG00000016545)
Degu	MODERN SPECIES	105	ETNK1 (ENSODEG00000011182)	SOX5 (ENSODEG00000011773)	ENSODEG00000010044	BCAT1 (ENSODEG00000009501)	IRAG2 (ENSODEG00000010644)	DNAI7 (ENSODEG00000009672)	KRAS (ENSODEG00000010412)	LMNTD1 (ENSODEG00000009925)	RASSF8 (ENSODEG00000010575) #15	BHLHE41 (ENSODEG00000013113) #16	SSPN (ENSODEG00000009793) #17	ENSODEG00000010077 #20	ENSODEG00000010321 #20	ENSODEG00000011680	INTS13 (ENSODEG00000010618) #21	FGFR1OP2 (ENSODEG00000010035) #22	TM7SF3 (ENSODEG00000010223) #24	ENSODEG00000010765	RBFOX2 (ENSODEG00000009937)	ENSODEG00000019846	MYH9 (ENSODEG00000011598)	ENSODEG00000011201	FOXRED2 (ENSODEG00000011573)	EIF3D (ENSODEG00000011039)	CACNG2 (ENSODEG00000011717)	IFT27 (ENSODEG00000012005)	PVALB (ENSODEG00000012198)	NCF4 (ENSODEG00000011148)	CSF2RB (ENSODEG00000010752)	TEX33 (ENSODEG00000010459)	TST (ENSODEG00000012577)
Sciuridae	ANCESTRAL SPECIES	15	ENSGT01030000234535.D	ENSGT00390000000212	ENSGT00950000182939.b.a.b.f	ENSGT00940000156122	ENSGT00390000009532.A.d.a	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182839.B.a.a #15	ENSGT00940000161014 #16	ENSGT00390000007747 #17	ENSGT00940000156039 #20	ENSGT00390000002793 #21	ENSGT00390000018003.b #22	ENSGT00970000193562	ENSGT00390000008702 #24	ENSGT00390000014557 #25	ENSGT00940000153544.b #28	ENSGT00940000160423 #29	ENSGT00940000153380.A #30	ENSGT00390000018322.b #26	ENSGT01050000244951.a.a #31	ENSGT00390000005178 #32	ENSGT00390000003443 #33	ENSGT00940000153377.C #34	ENSGT00940000160124 #35	ENSGT00390000004933 #36	ENSGT00390000015899 #37	ENSGT00390000006367.c
Eurasian red squirrel	MODERN SPECIES	14	ETNK1 (ENSSVLG00005011233)	ENSSVLG00005011366	SOX5 (ENSSVLG00005011483)	BCAT1 (ENSSVLG00005012012)	ENSSVLG00005012187	DNAI7 (ENSSVLG00005012568)	ETFRF1 (ENSSVLG00005013055)	KRAS (ENSSVLG00005013177)	LMNTD1 (ENSSVLG00005013266)	RASSF8 (ENSSVLG00005013368) #15	ENSSVLG00005013521	BHLHE41 (ENSSVLG00005013568) #16	SSPN (ENSSVLG00005013638) #17	ITPR2 (ENSSVLG00005014004) #20	INTS13 (ENSSVLG00005014650) #21	FGFR1OP2 (ENSSVLG00005014699) #22	ENSSVLG00005014788	TM7SF3 (ENSSVLG00005014809) #24	MED21 (ENSSVLG00005014838) #25	STK38L (ENSSVLG00005014875) #28	BMAL2 (ENSSVLG00005015014) #29	SMCO2 (ENSSVLG00005015897) #30	ENSSVLG00005016025	ENSSVLG00005016042 #26	PPFIBP1 (ENSSVLG00005016094) #31	REP15 (ENSSVLG00005016211) #32	MRPS35 (ENSSVLG00005016226) #33	MANSC4 (ENSSVLG00005016308) #34	KLHL42 (ENSSVLG00005016344) #35	ENSSVLG00005016361	PTHLH (ENSSVLG00005016398) #36
Marmotini	ANCESTRAL SPECIES	19	ENSGT01030000234535.D	ENSGT00390000000212	ENSGT00950000182939.b.a.b.f	ENSGT00940000156122	ENSGT00390000009532.A.d.a	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182839.B.a.a #15	ENSGT00940000161014 #16	ENSGT00390000007747 #17	ENSGT00940000156039 #20	ENSGT00390000002793 #21	ENSGT00390000018003.b #22	ENSGT00970000193562	ENSGT00390000008702 #24	ENSGT00390000014557.o #25	ENSGT00940000153544.b #28	ENSGT00940000160423 #29	ENSGT00940000153380.A #30	ENSGT00950000182907.a.a.j	ENSGT00390000018322.b #26	ENSGT01050000244951.a.a #31	ENSGT00390000005178 #32	ENSGT00390000003443 #33	ENSGT00940000153377.C #34	ENSGT00940000160124 #35	ENSGT00390000004933 #36	ENSGT00390000015899 #37
Alpin marmot	MODERN SPECIES	52	C2CD5 (ENSMMMG00000017591)	ETNK1 (ENSMMMG00000017995)	ENSMMMG00000018020	SOX5 (ENSMMMG00000018035)	BCAT1 (ENSMMMG00000018101)	IRAG2 (ENSMMMG00000018125)	DNAI7 (ENSMMMG00000018140)	ETFRF1 (ENSMMMG00000018182)	KRAS (ENSMMMG00000018194)	LMNTD1 (ENSMMMG00000018217)	ENSMMMG00000018222	ENSMMMG00000018244 #15	SSPN (ENSMMMG00000018260) #17	ITPR2 (ENSMMMG00000018276) #20	INTS13 (ENSMMMG00000018473) #21	FGFR1OP2 (ENSMMMG00000018478) #22	ENSMMMG00000018484	TM7SF3 (ENSMMMG00000018490) #24	MED21 (ENSMMMG00000018499) #25
Marmotini_b	ANCESTRAL SPECIES	57	ENSGT00390000000212	ENSGT00950000182939.b.a.b.f	ENSGT00940000156122	ENSGT00390000009532.A.d.a	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182839.B.a.a #15	ENSGT00940000161014 #16	ENSGT00390000007747 #17	ENSGT00940000156039 #20	ENSGT00390000002793 #21	ENSGT00970000193562	ENSGT00390000018003.b #22	ENSGT00390000008702 #24	ENSGT00390000014557.o #25	ENSGT00940000153544.b #28	ENSGT00940000160423 #29	ENSGT00940000153380.A #30	ENSGT00390000018322.b #26
Arctic ground squirrel	MODERN SPECIES	100	ENSUPAG00010016617	ETNK1 (ENSUPAG00010016592)	SOX5 (ENSUPAG00010016337)	BCAT1 (ENSUPAG00010016309)	IRAG2 (ENSUPAG00010016042)	DNAI7 (ENSUPAG00010015919)	ETFRF1 (ENSUPAG00010015915)	KRAS (ENSUPAG00010015896)	ENSUPAG00010015875	RASSF8 (ENSUPAG00010015858) #15	BHLHE41 (ENSUPAG00010015854) #16	SSPN (ENSUPAG00010015841) #17	ITPR2 (ENSUPAG00010015598) #20	INTS13 (ENSUPAG00010015517) #21	ENSUPAG00010015508	FGFR1OP2 (ENSUPAG00010015479) #22	TM7SF3 (ENSUPAG00010015455) #24	ENSUPAG00010015431 #25	ENSUPAG00010015410 #26	STK38L (ENSUPAG00010015362) #28	BMAL2 (ENSUPAG00010015267) #29	SMCO2 (ENSUPAG00010015239) #30	ENSUPAG00010015232 #26
Squirrel	MODERN SPECIES	148	C2CD5 (ENSSTOG00000004906)	ETNK1 (ENSSTOG00000008379)	SOX5 (ENSSTOG00000000100)	ENSSTOG00000004938	IRAG2 (ENSSTOG00000026727)	DNAI7 (ENSSTOG00000009509)	ETFRF1 (ENSSTOG00000024945)	KRAS (ENSSTOG00000009530)	ENSSTOG00000026226	LMNTD1 (ENSSTOG00000005098)	RASSF8 (ENSSTOG00000022027) #15	ENSSTOG00000021007 #16	SSPN (ENSSTOG00000021227) #17	ITPR2 (ENSSTOG00000015423) #20	ENSSTOG00000025972 #21	FGFR1OP2 (ENSSTOG00000008628) #22	TM7SF3 (ENSSTOG00000020883) #24	ENSSTOG00000008391 #25	STK38L (ENSSTOG00000001333) #28	BMAL2 (ENSSTOG00000001344) #29	ENSSTOG00000006052 #30	ENSSTOG00000006079
Laurasiatheria	ANCESTRAL SPECIES	6	ENSGT00390000000212	ENSGT00950000182939.b.a.b	ENSGT00940000156122	ENSGT00390000009532.A.d.a	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182839.B.a.a #15	ENSGT00940000161014 #16	ENSGT00390000007747 #17	ENSGT00940000156039 #20	ENSGT00940000167397.b	ENSGT00390000002793 #21	ENSGT00390000018003.b #22	ENSGT00970000193562	ENSGT00390000008702 #24	ENSGT00390000014557 #25	ENSGT00940000153544.b #28	ENSGT00940000169031	ENSGT01050000244951.a.a #31	ENSGT00940000160423 #29	ENSGT00940000153380.A #30	ENSGT00390000018322 #26	ENSGT00390000005178 #32	ENSGT00390000003443 #33	ENSGT00940000153377.C #34	ENSGT00940000160124 #35	ENSGT00390000004933 #36	ENSGT00390000015899 #37
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00390000018003.b #22
Hedgehog	MODERN SPECIES	1391																FGFR1OP2 (ENSEEUG00000004313) #22
Common shrew	MODERN SPECIES	907																FGFR1OP2 (ENSSARG00000009519) #22
Laurasiatheria_a	ANCESTRAL SPECIES	6	ENSGT00390000000212	ENSGT00950000182939.b.a.b	ENSGT00940000156122	ENSGT00390000009532.A.d.a	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182839.B.a.a #15	ENSGT00940000161014 #16	ENSGT00390000007747 #17	ENSGT00940000156039 #20	ENSGT00940000167397.b	ENSGT00390000002793 #21	ENSGT00390000018003.b #22	ENSGT00970000193562	ENSGT00390000008702 #24	ENSGT00390000014557 #25	ENSGT00940000153544.b #28	ENSGT00940000160423 #29	ENSGT00940000153380.A #30	ENSGT00390000018322 #26	ENSGT01050000244951.a.a #31	ENSGT00390000005178 #32	ENSGT00390000003443 #33	ENSGT00940000153377.C #34	ENSGT00940000160124 #35	ENSGT00390000004933 #36	ENSGT00390000015899 #37	ENSGT00390000006367.c
Artiodactyla	ANCESTRAL SPECIES	6	ENSGT01030000234535.D	ENSGT00390000000212	ENSGT00950000182939.b.a.b	ENSGT00940000156122	ENSGT00390000009532.A.d.a	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182839.B.a.a #15	ENSGT00940000161014 #16	ENSGT00390000007747 #17	ENSGT00940000156039 #20	ENSGT00390000002793 #21	ENSGT00390000018003.b #22	ENSGT00970000193562	ENSGT00390000008702 #24	ENSGT00390000014557 #25	ENSGT00940000153544.b #28	ENSGT00940000160423 #29	ENSGT00940000153380.A #30	ENSGT00390000018322 #26	ENSGT01050000244951.a.a #31	ENSGT00390000005178 #32	ENSGT00390000003443 #33	ENSGT00940000153377.C #34	ENSGT00940000160124 #35	ENSGT00390000004933 #36	ENSGT00390000015899 #37	ENSGT00390000006367.c
Suina	ANCESTRAL SPECIES	4	ENSGT01030000234535.D	ENSGT00390000000212	ENSGT00950000182939.b.a.b	ENSGT00940000156122	ENSGT00390000009532.A.d.a	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182839.B.a.a #15	ENSGT00940000161014 #16	ENSGT00390000007747 #17	ENSGT00940000156039 #20	ENSGT00390000002793 #21	ENSGT00390000018003.b #22	ENSGT00390000008702 #24	ENSGT00390000014557 #25	ENSGT00940000153544.b #28	ENSGT00940000160423 #29	ENSGT00940000153380.A #30	ENSGT00390000018322 #26	ENSGT01050000244951.a.a #31	ENSGT00390000005178 #32	ENSGT00390000003443 #33	ENSGT00940000153377.C #34	ENSGT00940000160124 #35	ENSGT00390000004933 #36	ENSGT00390000015899 #37	ENSGT00390000006367.c	ENSGT00530000063113.A
Pig	MODERN SPECIES	13	C2CD5 (ENSSSCG00000000570)	ETNK1 (ENSSSCG00000039397)	ENSSSCG00000051791	SOX5 (ENSSSCG00000000567)	BCAT1 (ENSSSCG00000029163)	ENSSSCG00000000563	DNAI7 (ENSSSCG00000040550)	ETFRF1 (ENSSSCG00000033843)	KRAS (ENSSSCG00000026969)	LMNTD1 (ENSSSCG00000027144)	RASSF8 (ENSSSCG00000000559) #15	BHLHE41 (ENSSSCG00000028552) #16	SSPN (ENSSSCG00000025531) #17	ITPR2 (ENSSSCG00000000555) #20	INTS13 (ENSSSCG00000030443) #21	FGFR1OP2 (ENSSSCG00000000554) #22	ENSSSCG00000036398	TM7SF3 (ENSSSCG00000000553) #24	MED21 (ENSSSCG00000041972) #25	ENSSSCG00000042702	STK38L (ENSSSCG00000022288) #28	BMAL2 (ENSSSCG00000000551) #29	SMCO2 (ENSSSCG00000000550) #30	PPFIBP1 (ENSSSCG00000000549) #31	MRPS35 (ENSSSCG00000000547) #32	MANSC4 (ENSSSCG00000053091) #34	KLHL42 (ENSSSCG00000000545) #35	PTHLH (ENSSSCG00000036893) #36	ENSSSCG00000045661	CCDC91 (ENSSSCG00000024232) #37	FAR2 (ENSSSCG00000000541)
Chacoan peccary	MODERN SPECIES	901	ST8SIA1 (ENSCWAG00000019183)	C2CD5 (ENSCWAG00000019218)	ETNK1 (ENSCWAG00000019545)	SOX5 (ENSCWAG00000019638)	BCAT1 (ENSCWAG00000019827)	ENSCWAG00000019994	DNAI7 (ENSCWAG00000020143)	ETFRF1 (ENSCWAG00000020390)	KRAS (ENSCWAG00000020412)	LMNTD1 (ENSCWAG00000020426)	RASSF8 (ENSCWAG00000020442) #15	BHLHE41 (ENSCWAG00000020451) #16	SSPN (ENSCWAG00000020468) #17	ITPR2 (ENSCWAG00000020490) #20	INTS13 (ENSCWAG00000020514) #21	FGFR1OP2 (ENSCWAG00000020531) #22	TM7SF3 (ENSCWAG00000020561) #24	MED21 (ENSCWAG00000020588) #25	STK38L (ENSCWAG00000020594) #28	SLC35E3 (ENSCWAG00000020603)	NUP107 (ENSCWAG00000020624)	RAP1B (ENSCWAG00000020716)	MDM1 (ENSCWAG00000020798)	IL22 (ENSCWAG00000020919)	IL26 (ENSCWAG00000020933)	IFNG (ENSCWAG00000020940)	DYRK2 (ENSCWAG00000020949)	CAND1 (ENSCWAG00000020959)	GRIP1 (ENSCWAG00000020998)	HELB (ENSCWAG00000003932)	IRAK3 (ENSCWAG00000004056)
Artiodactyla_a	ANCESTRAL SPECIES	5	ENSGT01030000234535.D	ENSGT00390000000212	ENSGT00950000182939.b.a.b	ENSGT00940000156122	ENSGT00390000009532.A.d.a	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182839.B.a.a #15	ENSGT00940000161014 #16	ENSGT00390000007747 #17	ENSGT00940000156039 #20	ENSGT00390000002793 #21	ENSGT00390000018003.b #22	ENSGT00970000193562	ENSGT00390000008702 #24	ENSGT00390000014557 #25	ENSGT00940000153544.b #28	ENSGT00940000160423 #29	ENSGT00940000153380.A #30	ENSGT00390000018322 #26	ENSGT01050000244951.a.a #31	ENSGT00390000005178 #32	ENSGT00390000003443 #33	ENSGT00940000153377.C #34	ENSGT00940000160124 #35	ENSGT00390000004933 #36	ENSGT00390000015899 #37	ENSGT00390000006367.c
Camelidae	ANCESTRAL SPECIES	17	ENSGT01030000234535.D	ENSGT00390000000212	ENSGT00950000182939.b.a.b	ENSGT00940000156122	ENSGT00390000009532.A.d.a	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182839.B.a.a #15	ENSGT00940000161014 #16	ENSGT00390000007747 #17	ENSGT00940000156039 #20	ENSGT00390000002793 #21	ENSGT00390000018003.b #22	ENSGT00390000008702 #24	ENSGT00390000014557 #25	ENSGT00940000153544.b #28	ENSGT00940000160423 #29	ENSGT00940000153380.A #30	ENSGT01050000244951.a.a #31	ENSGT00390000018322 #26	ENSGT00390000005178 #32	ENSGT00390000003443 #33	ENSGT00940000153377.C #34	ENSGT00940000160124 #35	ENSGT00390000004933 #36	ENSGT00390000015899.g #37	ENSGT00390000006367.c	ENSGT00530000063113.A
Alpaca	MODERN SPECIES	161													SSPN (ENSVPAG00000012153) #17	ITPR2 (ENSVPAG00000012154) #20	INTS13 (ENSVPAG00000012162) #21	FGFR1OP2 (ENSVPAG00000012163) #22	TM7SF3 (ENSVPAG00000012164) #24	MED21 (ENSVPAG00000012165) #25	STK38L (ENSVPAG00000012166) #28	BMAL2 (ENSVPAG00000012169) #29	ENSVPAG00000012170 #30	PPFIBP1 (ENSVPAG00000012171) #31	MRPS35 (ENSVPAG00000012174) #33	KLHL42 (ENSVPAG00000012175) #35	PTHLH (ENSVPAG00000012176) #36
Arabian camel	MODERN SPECIES	27	C2CD5 (ENSCDRG00005018969)	ETNK1 (ENSCDRG00005019130)	SOX5 (ENSCDRG00005019208)	BCAT1 (ENSCDRG00005019573)	ENSCDRG00005019915	DNAI7 (ENSCDRG00005020024)	ETFRF1 (ENSCDRG00005020089)	KRAS (ENSCDRG00005020107)	LMNTD1 (ENSCDRG00005020127)	RASSF8 (ENSCDRG00005009008) #15	BHLHE41 (ENSCDRG00005009146) #16	ENSCDRG00005009191	ENSCDRG00005009209 #17	ITPR2 (ENSCDRG00005009262) #20	INTS13 (ENSCDRG00005010111) #21	FGFR1OP2 (ENSCDRG00005010190) #22	TM7SF3 (ENSCDRG00005010304) #24	MED21 (ENSCDRG00005010403) #25	STK38L (ENSCDRG00005010444) #28	BMAL2 (ENSCDRG00005010535) #29	ENSCDRG00005011128 #30	PPFIBP1 (ENSCDRG00005011235) #31	ENSCDRG00005012014 #26	ENSCDRG00005012048 #26	REP15 (ENSCDRG00005012103) #32	MRPS35 (ENSCDRG00005012120) #33	MANSC4 (ENSCDRG00005012235) #34	ENSCDRG00005012256 #35	PTHLH (ENSCDRG00005012282) #36	ENSCDRG00005012405 #37	FAR2 (ENSCDRG00005012712)
Artiodactyla_b	ANCESTRAL SPECIES	5	ENSGT01030000234535.D	ENSGT00390000000212	ENSGT00950000182939.b.a.b	ENSGT00940000156122	ENSGT00390000009532.A.d.a	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182839.B.a.a #15	ENSGT00940000161014 #16	ENSGT00390000007747 #17	ENSGT00940000156039 #20	ENSGT00390000002793 #21	ENSGT00390000018003.b #22	ENSGT00970000193562	ENSGT00390000008702 #24	ENSGT00390000014557 #25	ENSGT00940000153544.b #28	ENSGT00940000160423 #29	ENSGT00940000153380.A #30	ENSGT00390000018322 #26	ENSGT01050000244951.a.a #31	ENSGT00390000005178 #32	ENSGT00390000003443 #33	ENSGT00940000153377.C #34	ENSGT00940000160124 #35	ENSGT00390000004933 #36	ENSGT00390000015899 #37	ENSGT00390000006367.c
Cetacea	ANCESTRAL SPECIES	8	ENSGT01030000234535.D	ENSGT00390000000212	ENSGT00950000182939.b.a.b	ENSGT00940000156122	ENSGT00390000009532.A.d.a	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182839.B.a.a #15	ENSGT00940000161014 #16	ENSGT00390000007747 #17	ENSGT00940000156039 #20	ENSGT00390000002793 #21	ENSGT00390000018003.b #22	ENSGT00970000193562	ENSGT00390000008702 #24	ENSGT00390000014557 #25	ENSGT00940000153544.b #28	ENSGT00940000160423 #29	ENSGT00940000153380.A #30	ENSGT01050000244951.a.a #31	ENSGT00390000018322 #26	ENSGT00390000005178 #32	ENSGT00390000003443 #33	ENSGT00940000153377.C #34	ENSGT00940000160124 #35	ENSGT00390000004933 #36	ENSGT00390000015899 #37	ENSGT00940000171088
Odontoceti	ANCESTRAL SPECIES	7	ENSGT00950000182939.b.a.b	ENSGT00640000091558.m.a	ENSGT00940000159157.h	ENSGT00940000156122	ENSGT00390000009532.A.d.a	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182839.B.a.a #15	ENSGT00940000161014 #16	ENSGT00390000007747 #17	ENSGT00940000156039 #20	ENSGT00390000002793 #21	ENSGT00390000018003.b #22	ENSGT00390000008702 #24	ENSGT00390000014557 #25	ENSGT00940000153544.b #28	ENSGT00940000160423 #29	ENSGT00940000153380.A #30	ENSGT00390000018322 #26	ENSGT01050000244951.a.a #31	ENSGT00390000005178 #32	ENSGT00390000003443 #33	ENSGT00940000153377.C #34	ENSGT00940000160124 #35	ENSGT00390000004933 #36	ENSGT00390000015899 #37	ENSGT00940000171088	ENSGT00390000006367.c
Sperm whale	DUPLICATION
Sperm whale	MODERN SPECIES	17	ENSPCTG00005017598	ENSPCTG00005017626	SOX5 (ENSPCTG00005017662)	ENSPCTG00005017984	BCAT1 (ENSPCTG00005018026)	LRMP (ENSPCTG00005018385)	CASC1 (ENSPCTG00005018863)	ETFRF1 (ENSPCTG00005019366)	KRAS (ENSPCTG00005019457)	LMNTD1 (ENSPCTG00005019496)	RASSF8 (ENSPCTG00005019531) #15	BHLHE41 (ENSPCTG00005019571) #16	SSPN (ENSPCTG00005019595) #17	ITPR2 (ENSPCTG00005019648) #20	INTS13 (ENSPCTG00005019777) #21	FGFR1OP2 (ENSPCTG00005019821) #22	TM7SF3 (ENSPCTG00005019861) #24	MED21 (ENSPCTG00005019892) #25	STK38L (ENSPCTG00005019961) #28	ARNTL2 (ENSPCTG00005007473) #29	ENSPCTG00005007826 #26	PPFIBP1 (ENSPCTG00005007880) #31	REP15 (ENSPCTG00005008422) #32	MRPS35 (ENSPCTG00005008446) #33	MANSC4 (ENSPCTG00005008487) #34	KLHL42 (ENSPCTG00005008510) #35	PTHLH (ENSPCTG00005008534) #36	CCDC91 (ENSPCTG00005008591) #37	ENSPCTG00005008770	FAR2 (ENSPCTG00005008807)	ERGIC2 (ENSPCTG00005008934)
Sperm whale	MODERN SPECIES	2	WDR72 (ENSPCTG00005003691)	UNC13C (ENSPCTG00005003774)	ENSPCTG00005003866	RSL24D1 (ENSPCTG00005003879)	RAB27A (ENSPCTG00005003889)	PIGBOS1 (ENSPCTG00005003898)	PIGB (ENSPCTG00005003912)	CCPG1 (ENSPCTG00005003939)	ENSPCTG00005003967	DNAAF4 (ENSPCTG00005003984)	PYGO1 (ENSPCTG00005004001)	PRTG (ENSPCTG00005004024)	ENSPCTG00005004050	NEDD4 (ENSPCTG00005004131)	RFX7 (ENSPCTG00005004716)	ENSPCTG00005004742 #22	ENSPCTG00005004746	TEX9 (ENSPCTG00005004786)	MNS1 (ENSPCTG00005004828)	ZNF280D (ENSPCTG00005004865)	ENSPCTG00005004946	TCF12 (ENSPCTG00005005020)	CGNL1 (ENSPCTG00005005300)	MYZAP (ENSPCTG00005005348)	POLR2M (ENSPCTG00005005433)	ALDH1A2 (ENSPCTG00005005493)	AQP9 (ENSPCTG00005005660)	LIPC (ENSPCTG00005005721)	ADAM10 (ENSPCTG00005005786)	MINDY2 (ENSPCTG00005006000)	ENSPCTG00005006055
Odontoceti_a	ANCESTRAL SPECIES	6	ENSGT00950000182939.b.a.b	ENSGT00640000091558.m.a	ENSGT00940000159157.h	ENSGT00940000156122	ENSGT00390000009532.A.d.a	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182839.B.a.a #15	ENSGT00940000161014 #16	ENSGT00390000007747 #17	ENSGT00940000156039 #20	ENSGT00390000002793 #21	ENSGT00390000018003.b #22	ENSGT00390000008702 #24	ENSGT00390000014557 #25	ENSGT00940000153544.b #28	ENSGT00940000160423 #29	ENSGT00940000153380.A #30	ENSGT01050000244951.a.a #31	ENSGT00390000005178 #32	ENSGT00390000003443 #33	ENSGT00940000153377.C #34	ENSGT00940000160124 #35	ENSGT00390000004933 #36	ENSGT00390000015899 #37	ENSGT00940000171088	ENSGT00390000006367.c	ENSGT00530000063113.A
Odontoceti_b	ANCESTRAL SPECIES	7	ENSGT00950000182939.b.a.b	ENSGT00640000091558.m.a	ENSGT00940000159157.h.a	ENSGT00940000156122	ENSGT00390000009532.A.d.a	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182839.B.a.a #15	ENSGT00940000161014 #16	ENSGT00390000007747 #17	ENSGT00940000156039 #20	ENSGT00390000002793 #21	ENSGT00390000018003.b #22	ENSGT00390000008702 #24	ENSGT00390000014557 #25	ENSGT01040000241025	ENSGT00940000153544.b #28	ENSGT00940000160423 #29	ENSGT00940000169031	ENSGT01050000244951.a.a #31	ENSGT00390000005178 #32	ENSGT00390000003443 #33	ENSGT00940000153377.C #34	ENSGT00940000160124 #35	ENSGT00390000004933 #36	ENSGT00390000015899 #37	ENSGT00940000171088	ENSGT00390000006367.c
Monodontidae	ANCESTRAL SPECIES	6	ENSGT00950000182939.b.a.b	ENSGT00640000091558.m.a	ENSGT00940000159157.h.a	ENSGT00940000156122	ENSGT00390000009532.A.d.a	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182839.B.a.a #15	ENSGT00940000161014 #16	ENSGT00390000007747 #17	ENSGT00940000156039 #20	ENSGT00390000002793 #21	ENSGT00390000018003.b #22	ENSGT00390000008702 #24	ENSGT00390000014557 #25	ENSGT01040000241025	ENSGT00940000153544.b #28	ENSGT00940000160423 #29	ENSGT01050000244951.a.a #31	ENSGT00390000005178 #32	ENSGT00390000003443 #33	ENSGT00940000153377.C #34	ENSGT00940000160124 #35	ENSGT00390000004933 #36	ENSGT00390000015899 #37	ENSGT00940000171088	ENSGT00390000006367.c	ENSGT00530000063113.A
Beluga whale	MODERN SPECIES	23	ETNK1 (ENSDLEG00000008827)	ENSDLEG00000008898	ENSDLEG00000008908	SOX5 (ENSDLEG00000008971)	BCAT1 (ENSDLEG00000009143)	IRAG2 (ENSDLEG00000009161)	DNAI7 (ENSDLEG00000009247)	ETFRF1 (ENSDLEG00000009294)	ENSDLEG00000009332	LMNTD1 (ENSDLEG00000009367)	RASSF8 (ENSDLEG00000009451) #15	BHLHE41 (ENSDLEG00000009472) #16	SSPN (ENSDLEG00000009487) #17	ITPR2 (ENSDLEG00000009955) #20	INTS13 (ENSDLEG00000013042) #21	FGFR1OP2 (ENSDLEG00000013073) #22	TM7SF3 (ENSDLEG00000013098) #24	MED21 (ENSDLEG00000013129) #25	ENSDLEG00000013144	STK38L (ENSDLEG00000013158) #28	BMAL2 (ENSDLEG00000013194) #29	PPFIBP1 (ENSDLEG00000013239) #31	REP15 (ENSDLEG00000013421) #32	MRPS35 (ENSDLEG00000013439) #33	MANSC4 (ENSDLEG00000013624) #34	KLHL42 (ENSDLEG00000013634) #35	PTHLH (ENSDLEG00000013653) #36	CCDC91 (ENSDLEG00000013680) #37	ENSDLEG00000013765	IFIT1 (ENSDLEG00000013792)	FAR2 (ENSDLEG00000013825)
Narwhal	MODERN SPECIES	313	ETNK1 (ENSMMNG00015015575)	ENSMMNG00015015589	ENSMMNG00015015600	SOX5 (ENSMMNG00015015755)	BCAT1 (ENSMMNG00015016154)	ENSMMNG00015016354	DNAI7 (ENSMMNG00015016543)	ETFRF1 (ENSMMNG00015016654)	KRAS (ENSMMNG00015016691)	LMNTD1 (ENSMMNG00015016737)	RASSF8 (ENSMMNG00015016768) #15	BHLHE41 (ENSMMNG00015016813) #16	SSPN (ENSMMNG00015016833) #17	ITPR2 (ENSMMNG00015016907) #20	INTS13 (ENSMMNG00015017124) #21	FGFR1OP2 (ENSMMNG00015017164) #22	TM7SF3 (ENSMMNG00015017212) #24	MED21 (ENSMMNG00015017243) #25	ENSMMNG00015017258	STK38L (ENSMMNG00015017291) #28	BMAL2 (ENSMMNG00015017460) #29	PPFIBP1 (ENSMMNG00015017936) #31	MRPS35 (ENSMMNG00015018219) #33	MANSC4 (ENSMMNG00015018247) #34	KLHL42 (ENSMMNG00015018263) #35	PTHLH (ENSMMNG00015018274) #36	CCDC91 (ENSMMNG00015018340) #37	ENSMMNG00015018436	ENSMMNG00015018454	FAR2 (ENSMMNG00015018470)	ERGIC2 (ENSMMNG00015018496)
Vaquita	MODERN SPECIES	1	ETNK1 (ENSPSNG00000008531)	ENSPSNG00000008505	SH3BGRL2 (ENSPSNG00000008477)	SOX5 (ENSPSNG00000008185)	BCAT1 (ENSPSNG00000008000)	ENSPSNG00000007613	DNAI7 (ENSPSNG00000007486)	ETFRF1 (ENSPSNG00000007433)	KRAS (ENSPSNG00000007396)	LMNTD1 (ENSPSNG00000007273)	RASSF8 (ENSPSNG00000007228) #15	BHLHE41 (ENSPSNG00000007190) #16	SSPN (ENSPSNG00000007152) #17	ITPR2 (ENSPSNG00000007090) #20	INTS13 (ENSPSNG00000007021) #21	FGFR1OP2 (ENSPSNG00000006954) #22	TM7SF3 (ENSPSNG00000006912) #24	MED21 (ENSPSNG00000006883) #25	ENSPSNG00000006853	STK38L (ENSPSNG00000006831) #28	BMAL2 (ENSPSNG00000006769) #29	ENSPSNG00000006722	ENSPSNG00000006681 #31	MRPS35 (ENSPSNG00000006622) #33	MANSC4 (ENSPSNG00000006601) #34	KLHL42 (ENSPSNG00000006576) #35	PTHLH (ENSPSNG00000006548) #36	CCDC91 (ENSPSNG00000006379) #37	ENSPSNG00000006325	FAR2 (ENSPSNG00000006264)	ERGIC2 (ENSPSNG00000006209)
Dolphin	MODERN SPECIES	923															INTS13 (ENSTTRG00000002720) #21	FGFR1OP2 (ENSTTRG00000002721) #22	TM7SF3 (ENSTTRG00000002722) #24	MED21 (ENSTTRG00000002723) #25
Blue whale	MODERN SPECIES	1	ETNK1 (ENSBMSG00010008756)	ENSBMSG00010008806	SOX5 (ENSBMSG00010008849)	BCAT1 (ENSBMSG00010008970)	ENSBMSG00010011021	DNAI7 (ENSBMSG00010011160)	ETFRF1 (ENSBMSG00010011375)	KRAS (ENSBMSG00010011390)	ENSBMSG00010011471	RASSF8 (ENSBMSG00010011482) #15	BHLHE41 (ENSBMSG00010011500) #16	SSPN (ENSBMSG00010011518) #17	ITPR2 (ENSBMSG00010011579) #20	ENSBMSG00010011832	INTS13 (ENSBMSG00010011853) #21	FGFR1OP2 (ENSBMSG00010011865) #22	ENSBMSG00010011878	TM7SF3 (ENSBMSG00010011888) #24	MED21 (ENSBMSG00010011918) #25	STK38L (ENSBMSG00010011935) #28	BMAL2 (ENSBMSG00010011997) #29	SMCO2 (ENSBMSG00010012071) #30	PPFIBP1 (ENSBMSG00010012137) #31	C12orf71 (ENSBMSG00010012172) #26	REP15 (ENSBMSG00010012183) #32	MRPS35 (ENSBMSG00010012193) #33	MANSC4 (ENSBMSG00010012224) #34	KLHL42 (ENSBMSG00010012247) #35	PTHLH (ENSBMSG00010012353) #36	CCDC91 (ENSBMSG00010012371) #37	ENSBMSG00010012387
Pecora	ANCESTRAL SPECIES	3	ENSGT01030000234535.D	ENSGT00390000000212	ENSGT00950000182939.b.a.b	ENSGT00940000156122	ENSGT00390000009532.A.d.a	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182839.B.a.a #15	ENSGT00940000161014 #16	ENSGT00390000007747 #17	ENSGT00940000156039 #20	ENSGT00390000002793 #21	ENSGT00390000018003.b #22	ENSGT00970000193562	ENSGT00390000008702 #24	ENSGT00390000014557 #25	ENSGT00940000153544.b #28	ENSGT00940000160423 #29	ENSGT00940000153380.A #30	ENSGT00390000018322 #26	ENSGT01050000244951.a.a #31	ENSGT00390000005178 #32	ENSGT00390000003443 #33	ENSGT00940000153377.C #34	ENSGT00940000160124 #35	ENSGT00390000004933 #36	ENSGT00390000015899 #37	ENSGT00390000006367.c
Yarkand deer	MODERN SPECIES	14	ENSCHYG00000013698	ENSCHYG00000013570	BCAT1 (ENSCHYG00000013194)	IRAG2 (ENSCHYG00000013072)	DNAI7 (ENSCHYG00000012592)	ENSCHYG00000012493	KRAS (ENSCHYG00000012381)	ENSCHYG00000012342	LMNTD1 (ENSCHYG00000012241)	RASSF8 (ENSCHYG00000012178) #15	BHLHE41 (ENSCHYG00000012152) #16	SSPN (ENSCHYG00000012092) #17	ITPR2 (ENSCHYG00000010667) #20	ENSCHYG00000010472	INTS13 (ENSCHYG00000010278) #21	FGFR1OP2 (ENSCHYG00000010083) #22	ENSCHYG00000010010	TM7SF3 (ENSCHYG00000009826) #24	MED21 (ENSCHYG00000009773) #25	STK38L (ENSCHYG00000009684) #28	BMAL2 (ENSCHYG00000009395) #29	SMCO2 (ENSCHYG00000009242) #30	C12orf71 (ENSCHYG00000009176) #26	PPFIBP1 (ENSCHYG00000008480) #31	REP15 (ENSCHYG00000008410) #32	MRPS35 (ENSCHYG00000008368) #33	MANSC4 (ENSCHYG00000008337) #34	KLHL42 (ENSCHYG00000008316) #35	PTHLH (ENSCHYG00000008276) #36	CCDC91 (ENSCHYG00000008096) #37	FAR2 (ENSCHYG00000007935)
Percora_a	ANCESTRAL SPECIES	3	ENSGT01030000234535.D	ENSGT00390000000212	ENSGT00950000182939.b.a.b	ENSGT00940000156122	ENSGT00390000009532.A.d.a	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182839.B.a.a #15	ENSGT00940000161014 #16	ENSGT00390000007747 #17	ENSGT00940000156039 #20	ENSGT00390000002793 #21	ENSGT00390000018003.b #22	ENSGT00970000193562	ENSGT00390000008702 #24	ENSGT00390000014557 #25	ENSGT00940000153544.b #28	ENSGT00940000160423 #29	ENSGT00940000153380.A #30	ENSGT00390000018322 #26	ENSGT01050000244951.a.a #31	ENSGT00390000005178 #32	ENSGT00390000003443 #33	ENSGT00940000153377.C #34	ENSGT00940000160124 #35	ENSGT00390000004933 #36	ENSGT00390000015899 #37	ENSGT00390000006367.c
Siberian musk deer	MODERN SPECIES	1250	ETNK1 (ENSMMSG00000023565)	SOX5 (ENSMMSG00000023587)	ENSMMSG00000023659	BCAT1 (ENSMMSG00000023666)	IRAG2 (ENSMMSG00000023682)	DNAI7 (ENSMMSG00000023707)	ETFRF1 (ENSMMSG00000023803)	KRAS (ENSMMSG00000023808)	ENSMMSG00000023815	LMNTD1 (ENSMMSG00000023821)	RASSF8 (ENSMMSG00000023837) #15	BHLHE41 (ENSMMSG00000023843) #16	SSPN (ENSMMSG00000023848) #17	ITPR2 (ENSMMSG00000023857) #20	INTS13 (ENSMMSG00000023873) #21	FGFR1OP2 (ENSMMSG00000023887) #22	ENSMMSG00000023896	TM7SF3 (ENSMMSG00000023901) #24	MED21 (ENSMMSG00000023910) #25	STK38L (ENSMMSG00000023918) #28	BMAL2 (ENSMMSG00000023936) #29	SMCO2 (ENSMMSG00000023956) #30	PPFIBP1 (ENSMMSG00000023976) #31	C12orf71 (ENSMMSG00000024010) #26	REP15 (ENSMMSG00000024013) #32	MRPS35 (ENSMMSG00000024018) #33	ENSMMSG00000024026	MANSC4 (ENSMMSG00000024028) #34	KLHL42 (ENSMMSG00000013526) #35	PTHLH (ENSMMSG00000013538) #36	CCDC91 (ENSMMSG00000013581) #37
Bovidae	ANCESTRAL SPECIES	3	ENSGT01030000234535.D	ENSGT00390000000212	ENSGT00950000182939.b.a.b	ENSGT00940000156122	ENSGT00390000009532.A.d.a	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182839.B.a.a #15	ENSGT00940000161014 #16	ENSGT00390000007747 #17	ENSGT00940000156039 #20	ENSGT00390000002793 #21	ENSGT00390000018003.b #22	ENSGT00970000193562	ENSGT00390000008702 #24	ENSGT00390000014557 #25	ENSGT00940000153544.b #28	ENSGT00940000160423 #29	ENSGT00940000153380.A #30	ENSGT00390000018322 #26	ENSGT01050000244951.a.a #31	ENSGT00390000005178 #32	ENSGT00390000003443 #33	ENSGT00940000153377.C #34	ENSGT00940000160124 #35	ENSGT00390000004933 #36	ENSGT00390000015899 #37	ENSGT00390000006367.c
Bovinae	ANCESTRAL SPECIES	10	ENSGT01030000234535.D	ENSGT00390000000212	ENSGT00950000182939.b.a.b	ENSGT00940000156122	ENSGT00390000009532.A.d.a.o	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182839.B.a.a #15	ENSGT00940000161014 #16	ENSGT00390000007747 #17	ENSGT00940000156039 #20	ENSGT00390000002793 #21	ENSGT00390000018003.b #22	ENSGT00970000193562	ENSGT00390000008702 #24	ENSGT00390000014557 #25	ENSGT00940000153544.b #28	ENSGT00940000160423 #29	ENSGT00940000153380.A #30	ENSGT00390000018322 #26	ENSGT01050000244951.a.a #31	ENSGT00390000005178 #32	ENSGT00390000003443 #33	ENSGT00940000153377.C #34	ENSGT00940000160124 #35	ENSGT00390000004933 #36	ENSGT00390000015899 #37	ENSGT00390000006367.c
Bos	ANCESTRAL SPECIES	2	ENSGT01030000234535.D	ENSGT00390000000212	ENSGT00950000182939.b.a.b	ENSGT00940000156122	ENSGT00390000009532.A.d.a.o	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182839.B.a.a #15	ENSGT00940000161014 #16	ENSGT00390000007747 #17	ENSGT00940000156039 #20	ENSGT00390000002793 #21	ENSGT00390000018003.b #22	ENSGT00970000193562	ENSGT00390000008702 #24	ENSGT00390000014557 #25	ENSGT00940000153544.b #28	ENSGT00940000160423 #29	ENSGT00940000153380.A #30	ENSGT00390000018322 #26	ENSGT01050000244951.a.a #31	ENSGT00390000005178 #32	ENSGT00390000003443 #33	ENSGT00940000153377.C #34	ENSGT00940000160124 #35	ENSGT00390000004933 #36	ENSGT00390000015899 #37	ENSGT00390000006367.c
Bos_b	ANCESTRAL SPECIES	22	ENSGT00950000182939.b.a.b	ENSGT00940000154152.d.b.h.a.b	ENSGT00940000156122	ENSGT00390000009532.A.d.a.o	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00530000063539.b.lb.a	ENSGT00910000144343	ENSGT00950000182839.B.a.a #15	ENSGT00940000161014 #16	ENSGT00390000007747 #17	ENSGT00940000156039 #20	ENSGT00390000002793 #21	ENSGT00390000018003.b #22	ENSGT00970000193562	ENSGT00390000008702 #24	ENSGT00390000014557 #25	ENSGT00940000153544.b #28	ENSGT00940000160423 #29	ENSGT00940000153380.A #30	ENSGT00390000018322 #26	ENSGT01050000244951.a.a #31	ENSGT00390000005178 #32	ENSGT00390000003443 #33	ENSGT00940000153377.C #34	ENSGT00940000160124 #35	ENSGT00390000004933 #36	ENSGT00390000015899 #37	ENSGT00390000006367.c
Cow	MODERN SPECIES	24	ENSBTAG00000004109	SOX5 (ENSBTAG00000022360)	BCAT1 (ENSBTAG00000013825)	IRAG2 (ENSBTAG00000019711)	DNAI7 (ENSBTAG00000002972)	ETFRF1 (ENSBTAG00000026624)	KRAS (ENSBTAG00000009778)	ENSBTAG00000055210	LMNTD1 (ENSBTAG00000000749)	RASSF8 (ENSBTAG00000021980) #15	BHLHE41 (ENSBTAG00000030575) #16	SSPN (ENSBTAG00000000393) #17	ITPR2 (ENSBTAG00000002313) #20	INTS13 (ENSBTAG00000013515) #21	ENSBTAG00000052661	FGFR1OP2 (ENSBTAG00000004532) #22	TM7SF3 (ENSBTAG00000006985) #24	MED21 (ENSBTAG00000005082) #25	STK38L (ENSBTAG00000011798) #28	ARNTL2 (ENSBTAG00000011804) #29	C5H12orf71 (ENSBTAG00000002775) #26	PPFIBP1 (ENSBTAG00000004283) #31	REP15 (ENSBTAG00000022083) #32	MRPS35 (ENSBTAG00000006369) #33	MANSC4 (ENSBTAG00000030622) #34	KLHL42 (ENSBTAG00000006372) #35	ENSBTAG00000006530	PTHLH (ENSBTAG00000006538) #36	CCDC91 (ENSBTAG00000012448) #37	FAR2 (ENSBTAG00000011095)	ERGIC2 (ENSBTAG00000011096)
Hybrid Bos Indicus	MODERN SPECIES	24	ETNK1 (ENSBIXG00005007986)	SOX5 (ENSBIXG00005007922)	ENSBIXG00005007855	ENSBIXG00005029312	IRAG2 (ENSBIXG00005029377)	DNAI7 (ENSBIXG00005029450)	ETFRF1 (ENSBIXG00005029501)	KRAS (ENSBIXG00005029534)	ENSBIXG00005029548	ENSBIXG00005029563	RASSF8 (ENSBIXG00005029583) #15	BHLHE41 (ENSBIXG00005029600) #16	SSPN (ENSBIXG00005029617) #17	ITPR2 (ENSBIXG00005029654) #20	INTS13 (ENSBIXG00005029676) #21	FGFR1OP2 (ENSBIXG00005029694) #22	ENSBIXG00005029705	TM7SF3 (ENSBIXG00005029713) #24	MED21 (ENSBIXG00005029720) #25	STK38L (ENSBIXG00005029742) #28	BMAL2 (ENSBIXG00005029787) #29	SMCO2 (ENSBIXG00005029999) #30	PPFIBP1 (ENSBIXG00005030080) #31	ENSBIXG00005030157	ENSBIXG00005030158	C12orf71 (ENSBIXG00005030164) #26	REP15 (ENSBIXG00005001594) #32	MRPS35 (ENSBIXG00005029219) #33	MANSC4 (ENSBIXG00005029203) #34	KLHL42 (ENSBIXG00005001696) #35	ENSBIXG00005029171
Bos_a	ANCESTRAL SPECIES	3	ENSGT00910000148264	ENSGT00390000000212	ENSGT00950000182939.b.a.b	ENSGT00940000156122	ENSGT00390000009532.A.d.a.o	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182839.B.a.a #15	ENSGT00940000161014 #16	ENSGT00390000007747 #17	ENSGT00940000156039 #20	ENSGT00390000002793 #21	ENSGT00390000018003.b #22	ENSGT00970000193562	ENSGT00390000008702 #24	ENSGT00390000014557 #25	ENSGT00940000153544.b #28	ENSGT00940000160423 #29	ENSGT00940000153380.A #30	ENSGT00390000018322 #26	ENSGT01050000244951.a.a #31	ENSGT00390000005178 #32	ENSGT00390000003443 #33	ENSGT00940000153377.C #34	ENSGT00940000160124 #35	ENSGT00390000004933 #36	ENSGT00390000015899 #37	ENSGT00390000006367.c
Wild yak	MODERN SPECIES	1417											RASSF8 (ENSBMUG00000022595) #15	ENSBMUG00000022604 #16	SSPN (ENSBMUG00000022617) #17	ITPR2 (ENSBMUG00000022656) #20	INTS13 (ENSBMUG00000022679) #21	FGFR1OP2 (ENSBMUG00000022693) #22	ENSBMUG00000022702	TM7SF3 (ENSBMUG00000022712) #24	MED21 (ENSBMUG00000022717) #25	STK38L (ENSBMUG00000022723) #28	BMAL2 (ENSBMUG00000022840) #29	SMCO2 (ENSBMUG00000022924) #30	C12orf71 (ENSBMUG00000022953) #26	PPFIBP1 (ENSBMUG00000023024) #31	REP15 (ENSBMUG00000023046) #32	MRPS35 (ENSBMUG00000023070) #33	MANSC4 (ENSBMUG00000023089) #34	KLHL42 (ENSBMUG00000023099) #35	ENSBMUG00000023109
Domestic yak	MODERN SPECIES	24	ENSBGRG00000001086	IRAG2 (ENSBGRG00000001276)	DNAI7 (ENSBGRG00000001323)	ENSBGRG00000001511	KRAS (ENSBGRG00000001524)	LMNTD1 (ENSBGRG00000001546)	RASSF8 (ENSBGRG00000001611) #15	BHLHE41 (ENSBGRG00000001670) #16	SSPN (ENSBGRG00000001691) #17	ITPR2 (ENSBGRG00000001728) #20	ENSBGRG00000001831	ENSBGRG00000001852	ENSBGRG00000001863	ENSBGRG00000001877	INTS13 (ENSBGRG00000001890) #21	FGFR1OP2 (ENSBGRG00000001934) #22	ENSBGRG00000001967	TM7SF3 (ENSBGRG00000001991) #24	MED21 (ENSBGRG00000002068) #25	ENSBGRG00000002107	ENSBGRG00000002115	ENSBGRG00000002121	STK38L (ENSBGRG00000002135) #28	BMAL2 (ENSBGRG00000002219) #29	SMCO2 (ENSBGRG00000002549) #30	PPFIBP1 (ENSBGRG00000002623) #31	C12orf71 (ENSBGRG00000002668) #26	REP15 (ENSBGRG00000002676) #32	MRPS35 (ENSBGRG00000002686) #33	MANSC4 (ENSBGRG00000002701) #34	KLHL42 (ENSBGRG00000002712) #35
American bison	MODERN SPECIES	3284	ENSBBBG00000011091	C2CD5 (ENSBBBG00000011064)	ETNK1 (ENSBBBG00000010821)	SOX5 (ENSBBBG00000010795)	ENSBBBG00000010741	IRAG2 (ENSBBBG00000010696)	DNAI7 (ENSBBBG00000001867)	ENSBBBG00000001854	KRAS (ENSBBBG00000010586)	ENSBBBG00000010578	ENSBBBG00000010575	RASSF8 (ENSBBBG00000010565) #15	SSPN (ENSBBBG00000010548) #17	ITPR2 (ENSBBBG00000010536) #20	INTS13 (ENSBBBG00000010504) #21	FGFR1OP2 (ENSBBBG00000010494) #22	ENSBBBG00000001825	TM7SF3 (ENSBBBG00000007642) #24	MED21 (ENSBBBG00000010435) #25	STK38L (ENSBBBG00000010425) #28	BMAL2 (ENSBBBG00000010408) #29	SMCO2 (ENSBBBG00000010301) #30	ENSBBBG00000010290	C12orf71 (ENSBBBG00000001760) #26	PPFIBP1 (ENSBBBG00000001757) #31	REP15 (ENSBBBG00000025253) #32	MRPS35 (ENSBBBG00000025249) #33	MANSC4 (ENSBBBG00000006682) #34	KLHL42 (ENSBBBG00000025229) #35	PTHLH (ENSBBBG00000007849) #36	CCDC91 (ENSBBBG00000025175) #37
Caprinae	ANCESTRAL SPECIES		ENSGT00390000000212	ENSGT00950000182939.b.a.b	ENSGT00940000156122	ENSGT00390000009532.A.d.a	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182839.B.a.a #15	ENSGT00940000161014 #16	ENSGT00390000007747 #17	ENSGT00940000156039 #20	ENSGT00390000002793 #21	ENSGT00970000193562	ENSGT00390000018003.b #22	ENSGT00390000008702 #24	ENSGT00390000014557 #25	ENSGT00940000153544.b #28	ENSGT00940000160423 #29	ENSGT00940000153380.A #30	ENSGT00390000018322 #26	ENSGT01050000244951.a.a #31	ENSGT00390000005178 #32	ENSGT00390000003443 #33	ENSGT00940000153377.C #34	ENSGT00940000160124 #35	ENSGT00390000004933 #36	ENSGT00390000015899 #37	ENSGT00390000006367.c	ENSGT00530000063113.A
Goat	MODERN SPECIES	24	ENSCHIG00000003098	SOX5 (ENSCHIG00000026249)	BCAT1 (ENSCHIG00000025125)	ENSCHIG00000000786	IRAG2 (ENSCHIG00000006732)	DNAI7 (ENSCHIG00000016268)	ETFRF1 (ENSCHIG00000023135)	KRAS (ENSCHIG00000026575)	ENSCHIG00000011443	LMNTD1 (ENSCHIG00000017319)	RASSF8 (ENSCHIG00000024588) #15	BHLHE41 (ENSCHIG00000024108) #16	SSPN (ENSCHIG00000024484) #17	ITPR2 (ENSCHIG00000016600) #20	INTS13 (ENSCHIG00000002599) #21	FGFR1OP2 (ENSCHIG00000020593) #22	ENSCHIG00000001969	TM7SF3 (ENSCHIG00000010359) #24	MED21 (ENSCHIG00000017040) #25	STK38L (ENSCHIG00000015117) #28	BMAL2 (ENSCHIG00000019532) #29	SMCO2 (ENSCHIG00000023398) #30	ENSCHIG00000003027 #26	ENSCHIG00000013535	PPFIBP1 (ENSCHIG00000026121) #31	REP15 (ENSCHIG00000007339) #32	ENSCHIG00000018625	ENSCHIG00000025620 #33	KLHL42 (ENSCHIG00000016441) #35	PTHLH (ENSCHIG00000007526) #36	ENSCHIG00000026911
Rambouillet Sheep	MODERN SPECIES	19	ENSOARG00020004905	BCAT1 (ENSOARG00020004542)	IRAG2 (ENSOARG00020004466)	CASC1 (ENSOARG00020003767)	ENSOARG00020003693	KRAS (ENSOARG00020003619)	ENSOARG00020003591	ENSOARG00020003559	ENSOARG00020003528	RASSF8 (ENSOARG00020003491) #15	BHLHE41 (ENSOARG00020003455) #16	SSPN (ENSOARG00020003422) #17	ITPR2 (ENSOARG00020003133) #20	INTS13 (ENSOARG00020003013) #21	ENSOARG00020002981	FGFR1OP2 (ENSOARG00020002964) #22	TM7SF3 (ENSOARG00020002918) #24	ENSOARG00020002907 #25	STK38L (ENSOARG00020002895) #28	BMAL2 (ENSOARG00020002869) #29	ENSOARG00020002844 #30	ENSOARG00020002836 #26	ENSOARG00020002830 #26	ENSOARG00020002826	PPFIBP1 (ENSOARG00020002786) #31	REP15 (ENSOARG00020002773) #32	MRPS35 (ENSOARG00020002709) #33	MANSC4 (ENSOARG00020002683) #34	KLHL42 (ENSOARG00020002673) #35	PTHLH (ENSOARG00020002659) #36	CCDC91 (ENSOARG00020002633) #37
Laurasiatheria_b	ANCESTRAL SPECIES	6	ENSGT00390000000212	ENSGT00950000182939.b.a.b	ENSGT00940000156122	ENSGT00390000009532.A.d.a	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182839.B.a.a #15	ENSGT00940000161014 #16	ENSGT00390000007747 #17	ENSGT00940000156039 #20	ENSGT00940000167397.b	ENSGT00390000002793 #21	ENSGT00390000018003.b #22	ENSGT00970000193562	ENSGT00390000008702 #24	ENSGT00390000014557 #25	ENSGT00940000153544.b #28	ENSGT00940000160423 #29	ENSGT00940000153380.A #30	ENSGT00390000018322 #26	ENSGT01050000244951.a.a #31	ENSGT00390000005178 #32	ENSGT00390000003443 #33	ENSGT00940000153377.C #34	ENSGT00940000160124 #35	ENSGT00390000004933 #36	ENSGT00390000015899 #37	ENSGT00390000006367.c
Carnivora	ANCESTRAL SPECIES	3	ENSGT00910000148264	ENSGT00390000000212	ENSGT00950000182939.b.a.b	ENSGT00940000156122	ENSGT00390000009532.A.d.a	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182839.B.a.a #15	ENSGT00940000161014 #16	ENSGT00390000007747 #17	ENSGT00940000156039 #20	ENSGT00390000002793 #21	ENSGT00390000018003.b #22	ENSGT00970000193562	ENSGT00390000008702 #24	ENSGT00390000014557 #25	ENSGT00940000153544.b #28	ENSGT00940000160423 #29	ENSGT00940000153380.A #30	ENSGT00390000018322 #26	ENSGT01050000244951.a.a #31	ENSGT00390000005178 #32	ENSGT00390000003443 #33	ENSGT00940000153377.C #34	ENSGT00940000160124 #35	ENSGT00390000004933 #36	ENSGT00390000015899 #37	ENSGT00390000006367.c
Felidae	ANCESTRAL SPECIES	2	ENSGT01030000234535.D	ENSGT00390000000212	ENSGT00950000182939.b.a.b	ENSGT00940000156122	ENSGT00390000009532.A.d.a	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182839.B.a.a #15	ENSGT00940000161014 #16	ENSGT00390000007747 #17	ENSGT00940000156039 #20	ENSGT00390000002793 #21	ENSGT00390000018003.b #22	ENSGT00970000193562	ENSGT00390000008702 #24	ENSGT00390000014557 #25	ENSGT00940000153544.b #28	ENSGT00940000160423 #29	ENSGT00940000153380.A #30	ENSGT00390000018322 #26	ENSGT01050000244951.a.a #31	ENSGT00390000005178 #32	ENSGT00390000003443 #33	ENSGT00940000153377.C #34	ENSGT00940000160124 #35	ENSGT00390000004933 #36	ENSGT00390000015899 #37	ENSGT00390000006367.c
Panthera	ANCESTRAL SPECIES		ENSGT00390000000212	ENSGT00950000182939.b.a.b	ENSGT00940000156122	ENSGT00390000009532.A.d.a	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00390000006621.p.b	ENSGT00910000144343	ENSGT00950000182839.B.a.a #15	ENSGT00940000161014 #16	ENSGT00390000007747 #17	ENSGT00940000156039 #20	ENSGT00390000002793 #21	ENSGT00390000018003.b #22	ENSGT00970000193562	ENSGT00390000008702 #24	ENSGT00390000014557 #25	ENSGT00940000153544.b #28	ENSGT00940000160423 #29	ENSGT00940000153380.A #30	ENSGT00390000018322 #26	ENSGT01050000244951.a.a #31	ENSGT00390000005178 #32	ENSGT00390000003443 #33	ENSGT00940000153377.C #34	ENSGT00940000160124 #35	ENSGT00390000004933 #36	ENSGT00390000015899 #37	ENSGT00390000006367.c
Panthera_a	ANCESTRAL SPECIES	5	ENSGT00390000000212	ENSGT00950000182939.b.a.b	ENSGT00940000156122	ENSGT00390000009532.A.d.a	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00390000006621.p.b	ENSGT00910000144343	ENSGT00950000182839.B.a.a #15	ENSGT00940000161014 #16	ENSGT00390000007747 #17	ENSGT00940000156039 #20	ENSGT00390000002793 #21	ENSGT00390000018003.b #22	ENSGT00970000193562	ENSGT00390000008702 #24	ENSGT00390000014557 #25	ENSGT00940000153544.b #28	ENSGT00940000160423 #29	ENSGT00940000153380.A #30	ENSGT00390000018322 #26	ENSGT01050000244951.a.a #31	ENSGT00390000005178 #32	ENSGT00390000003443 #33	ENSGT00940000153377.C #34	ENSGT00940000160124 #35	ENSGT00390000004933 #36	ENSGT00390000015899 #37	ENSGT00390000006367.c
lion	MODERN SPECIES	7	ST8SIA1 (ENSPLOG00000011708)	C2CD5 (ENSPLOG00000011822)	ETNK1 (ENSPLOG00000012031)	SOX5 (ENSPLOG00000012174)	BCAT1 (ENSPLOG00000012638)	IRAG2 (ENSPLOG00000012818)	DNAI7 (ENSPLOG00000012922)	ETFRF1 (ENSPLOG00000013319)	KRAS (ENSPLOG00000013375)	LMNTD1 (ENSPLOG00000013503)	RASSF8 (ENSPLOG00000013701) #15	BHLHE41 (ENSPLOG00000013781) #16	SSPN (ENSPLOG00000013850) #17	ITPR2 (ENSPLOG00000014010) #20	INTS13 (ENSPLOG00000014549) #21	FGFR1OP2 (ENSPLOG00000014661) #22	TM7SF3 (ENSPLOG00000014731) #24	MED21 (ENSPLOG00000014783) #25	ENSPLOG00000014826	STK38L (ENSPLOG00000014888) #28	BMAL2 (ENSPLOG00000015029) #29	SMCO2 (ENSPLOG00000015964) #30	PPFIBP1 (ENSPLOG00000016104) #31	C12orf71 (ENSPLOG00000016208) #26	REP15 (ENSPLOG00000016244) #32	MRPS35 (ENSPLOG00000016271) #33	MANSC4 (ENSPLOG00000016405) #34	KLHL42 (ENSPLOG00000016454) #35	PTHLH (ENSPLOG00000016491) #36	CCDC91 (ENSPLOG00000016602) #37	FAR2 (ENSPLOG00000016727)
leopard	MODERN SPECIES	22	ENSPPRG00000024478	ENSPPRG00000015924	BCAT1 (ENSPPRG00000014007)	IRAG2 (ENSPPRG00000011474)	DNAI7 (ENSPPRG00000009751)	ETFRF1 (ENSPPRG00000008544)	KRAS (ENSPPRG00000007389)	ENSPPRG00000021326	LMNTD1 (ENSPPRG00000005840)	ENSPPRG00000002786	RASSF8 (ENSPPRG00000002732) #15	BHLHE41 (ENSPPRG00000002206) #16	SSPN (ENSPPRG00000001270) #17	ITPR2 (ENSPPRG00000000552) #20	INTS13 (ENSPPRG00000023929) #21	FGFR1OP2 (ENSPPRG00000024117) #22	ENSPPRG00000021015	TM7SF3 (ENSPPRG00000024445) #24	MED21 (ENSPPRG00000024523) #25	STK38L (ENSPPRG00000024631) #28	BMAL2 (ENSPPRG00000020278) #29	C12orf71 (ENSPPRG00000006577) #26	PPFIBP1 (ENSPPRG00000006483) #31	REP15 (ENSPPRG00000020751) #32	MRPS35 (ENSPPRG00000022747) #33	MANSC4 (ENSPPRG00000023400) #34	KLHL42 (ENSPPRG00000023573) #35	PTHLH (ENSPPRG00000023622) #36	CCDC91 (ENSPPRG00000024057) #37	FAR2 (ENSPPRG00000024441)	ERGIC2 (ENSPPRG00000024764)
Tiger	MODERN SPECIES	60			SOX5 (ENSPTIG00000011175)	BCAT1 (ENSPTIG00000011686)	IRAG2 (ENSPTIG00000011942)	DNAI7 (ENSPTIG00000012206)	ETFRF1 (ENSPTIG00000012518)	KRAS (ENSPTIG00000012574)	ENSPTIG00000009930	LMNTD1 (ENSPTIG00000012835)	RASSF8 (ENSPTIG00000012970) #15	ENSPTIG00000013141 #16	ENSPTIG00000013161 #17	ITPR2 (ENSPTIG00000013225) #20	INTS13 (ENSPTIG00000013897) #21	FGFR1OP2 (ENSPTIG00000014013) #22	ENSPTIG00000009962	TM7SF3 (ENSPTIG00000014224) #24	MED21 (ENSPTIG00000014470) #25	STK38L (ENSPTIG00000014491) #28	BMAL2 (ENSPTIG00000015319) #29	SMCO2 (ENSPTIG00000015662) #30	C12orf71 (ENSPTIG00000016335) #26	PPFIBP1 (ENSPTIG00000016378) #31	REP15 (ENSPTIG00000009968) #32	MRPS35 (ENSPTIG00000016892) #33	MANSC4 (ENSPTIG00000016906) #34	KLHL42 (ENSPTIG00000016956) #35	PTHLH (ENSPTIG00000016986) #36	CCDC91 (ENSPTIG00000017222) #37
Cat	MODERN SPECIES	238	ST8SIA1 (ENSFCAG00000037857)	C2CD5 (ENSFCAG00000025410)	ETNK1 (ENSFCAG00000022622)	SOX5 (ENSFCAG00000002051)	BCAT1 (ENSFCAG00000008611)	IRAG2 (ENSFCAG00000027350)	DNAI7 (ENSFCAG00000030767)	ETFRF1 (ENSFCAG00000036819)	KRAS (ENSFCAG00000026808)	LMNTD1 (ENSFCAG00000027228)	RASSF8 (ENSFCAG00000028575) #15	BHLHE41 (ENSFCAG00000042690) #16	SSPN (ENSFCAG00000035306) #17	ITPR2 (ENSFCAG00000004324) #20	INTS13 (ENSFCAG00000004325) #21	FGFR1OP2 (ENSFCAG00000024282) #22	TM7SF3 (ENSFCAG00000025765) #24	MED21 (ENSFCAG00000035227) #25	STK38L (ENSFCAG00000030270) #28	ARNTL2 (ENSFCAG00000000386) #29	SMCO2 (ENSFCAG00000000387) #30	PPFIBP1 (ENSFCAG00000007533) #31	C12orf71 (ENSFCAG00000042244) #26	REP15 (ENSFCAG00000025027) #32	MRPS35 (ENSFCAG00000029524) #33	MANSC4 (ENSFCAG00000045550) #34	KLHL42 (ENSFCAG00000043246) #35	PTHLH (ENSFCAG00000008323) #36	CCDC91 (ENSFCAG00000029389) #37	ENSFCAG00000039611	FAR2 (ENSFCAG00000000237)
Caniformia	ANCESTRAL SPECIES	19	ENSGT00910000148264	ENSGT00390000000212	ENSGT00950000182939.b.a.b	ENSGT00940000156122	ENSGT00390000009532.A.d.a	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182839.B.a.a #15	ENSGT00940000161014 #16	ENSGT00390000007747 #17	ENSGT00940000156039 #20	ENSGT00390000002793 #21	ENSGT00390000018003.b #22	ENSGT00970000193562	ENSGT00390000008702 #24	ENSGT00390000014557 #25	ENSGT00940000153544.b #28	ENSGT00940000160423 #29	ENSGT00940000153380.A #30	ENSGT00390000018322 #26	ENSGT01050000244951.a.a #31	ENSGT00390000005178 #32	ENSGT00390000003443 #33	ENSGT00940000153377.C #34	ENSGT00940000160124 #35	ENSGT00390000004933 #36	ENSGT00390000015899 #37	ENSGT00390000006367.c
Canidae	ANCESTRAL SPECIES	8	ENSGT00390000000212	ENSGT00950000182939.b.a.b	ENSGT00940000156122	ENSGT00390000009532.A.d.a	ENSGT00940000160340.c.c.b.b	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182839.B.a.a #15	ENSGT00940000161014 #16	ENSGT00390000007747 #17	ENSGT00940000156039 #20	ENSGT00390000002793 #21	ENSGT00390000018003.b #22	ENSGT00390000008702 #24	ENSGT00390000014557 #25	ENSGT00940000153544.b #28	ENSGT00940000160423 #29	ENSGT00940000153380.A #30	ENSGT00390000018322 #26	ENSGT01050000244951.a.a #31	ENSGT00390000005178 #32	ENSGT00390000003443 #33	ENSGT00940000153377.C #34	ENSGT00940000160124 #35	ENSGT00390000004933 #36	ENSGT00390000015899 #37	ENSGT00390000006367.c	ENSGT00530000063113.A
Canis_lupus	ANCESTRAL SPECIES	14	ENSGT00390000009532.A.d.a	ENSGT00940000160340.c.c.b.b	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00910000144343	ENSGT00390000018145.kc.a	ENSGT00390000018085.a.b.a.d	ENSGT00950000182839.B.a.a #15	ENSGT00940000161014 #16	ENSGT00390000007747 #17	ENSGT00940000156039 #20	ENSGT00940000159076.r	ENSGT00390000002793 #21	ENSGT00390000018003.b #22	ENSGT00390000008702 #24	ENSGT00390000014557 #25	ENSGT00940000153544.b #28	ENSGT00940000160423 #29	ENSGT00940000153380.A #30	ENSGT00390000018322 #26	ENSGT01050000244951.a.a #31	ENSGT00390000005178 #32	ENSGT00390000003443 #33	ENSGT00940000153377.C #34	ENSGT00940000160124 #35	ENSGT00390000004933 #36	ENSGT00390000015899 #37	ENSGT00390000006367.c	ENSGT00530000063113.A
Dingo	MODERN SPECIES	295	BCAT1 (ENSCAFG00020012762)	ENSCAFG00020012764	IRAG2 (ENSCAFG00020012771)	DNAI7 (ENSCAFG00020012784)	ETFRF1 (ENSCAFG00020012787)	KRAS (ENSCAFG00020012793)	LMNTD1 (ENSCAFG00020012824)	ENSCAFG00020012827	ENSCAFG00020012829	RASSF8 (ENSCAFG00020012835) #15	BHLHE41 (ENSCAFG00020012838) #16	SSPN (ENSCAFG00020012850) #17	ITPR2 (ENSCAFG00020012877) #20	ENSCAFG00020012958	INTS13 (ENSCAFG00020012960) #21	FGFR1OP2 (ENSCAFG00020012964) #22	TM7SF3 (ENSCAFG00020012969) #24	MED21 (ENSCAFG00020012972) #25	STK38L (ENSCAFG00020012999) #28	BMAL2 (ENSCAFG00020013461) #29	SMCO2 (ENSCAFG00020013467) #30	PPFIBP1 (ENSCAFG00020013476) #31	ENSCAFG00020013505 #26	REP15 (ENSCAFG00020013508) #32	MRPS35 (ENSCAFG00020013510) #33	MANSC4 (ENSCAFG00020013514) #34	KLHL42 (ENSCAFG00020013524) #35	PTHLH (ENSCAFG00020013530) #36	CCDC91 (ENSCAFG00020013541) #37	FAR2 (ENSCAFG00020013594)	ERGIC2 (ENSCAFG00020013599)
Dog	MODERN SPECIES	19	BCAT1 (ENSCAFG00845013534)	ENSCAFG00845013478	LRMP (ENSCAFG00845013359)	DNAI7 (ENSCAFG00845013037)	ETFRF1 (ENSCAFG00845012920)	KRAS (ENSCAFG00845026771)	LMNTD1 (ENSCAFG00845026629)	ENSCAFG00845026573	ENSCAFG00845026487	RASSF8 (ENSCAFG00845026362) #15	BHLHE41 (ENSCAFG00845026188) #16	SSPN (ENSCAFG00845026060) #17	ITPR2 (ENSCAFG00845025705) #20	ENSCAFG00845025636	INTS13 (ENSCAFG00845025493) #21	FGFR1OP2 (ENSCAFG00845025406) #22	TM7SF3 (ENSCAFG00845025291) #24	MED21 (ENSCAFG00845025211) #25	STK38L (ENSCAFG00845025108) #28	ENSCAFG00845024620 #29	SMCO2 (ENSCAFG00845024385) #30	ENSCAFG00845024323 #26	PPFIBP1 (ENSCAFG00845023504) #31	REP15 (ENSCAFG00845023340) #32	MRPS35 (ENSCAFG00845023197) #33	MANSC4 (ENSCAFG00845023132) #34	KLHL42 (ENSCAFG00845023098) #35	PTHLH (ENSCAFG00845022996) #36	CCDC91 (ENSCAFG00845022625) #37	FAR2 (ENSCAFG00845022455)	ERGIC2 (ENSCAFG00845022137)
Red fox	MODERN SPECIES	18	ENSVVUG00000000296	SOX5 (ENSVVUG00000000151)	BCAT1 (ENSVVUG00000030352)	ENSVVUG00000030351	IRAG2 (ENSVVUG00000030348)	DNAI7 (ENSVVUG00000030347)	ETFRF1 (ENSVVUG00000030346)	ENSVVUG00000030345	LMNTD1 (ENSVVUG00000030344)	ENSVVUG00000030343	RASSF8 (ENSVVUG00000030342) #15	BHLHE41 (ENSVVUG00000030341) #16	SSPN (ENSVVUG00000030340) #17	ITPR2 (ENSVVUG00000030334) #20	INTS13 (ENSVVUG00000030299) #21	FGFR1OP2 (ENSVVUG00000030294) #22	TM7SF3 (ENSVVUG00000030290) #24	MED21 (ENSVVUG00000030287) #25	STK38L (ENSVVUG00000030277) #28	BMAL2 (ENSVVUG00000030272) #29	SMCO2 (ENSVVUG00000030266) #30	ENSVVUG00000030260 #26	ENSVVUG00000030257	PPFIBP1 (ENSVVUG00000030242) #31	REP15 (ENSVVUG00000030238) #32	MRPS35 (ENSVVUG00000030237) #33	MANSC4 (ENSVVUG00000030234) #34	KLHL42 (ENSVVUG00000030233) #35	PTHLH (ENSVVUG00000030227) #36	CCDC91 (ENSVVUG00000030214) #37	FAR2 (ENSVVUG00000030198)
Caniformia_b	ANCESTRAL SPECIES	17	ENSGT01030000234535.D	ENSGT00390000000212	ENSGT00950000182939.b.a.b	ENSGT00940000156122	ENSGT00390000009532.A.d.a	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182839.B.a.a #15	ENSGT00940000161014 #16	ENSGT00390000007747 #17	ENSGT00940000156039 #20	ENSGT00390000002793 #21	ENSGT00390000018003.b #22	ENSGT00970000193562	ENSGT00390000008702 #24	ENSGT00390000014557 #25	ENSGT00940000153544.b #28	ENSGT00940000160423 #29	ENSGT00940000153380.A #30	ENSGT00390000018322 #26	ENSGT01050000244951.a.a #31	ENSGT00390000005178 #32	ENSGT00390000003443 #33	ENSGT00940000153377.C #34	ENSGT00940000160124 #35	ENSGT00390000004933 #36	ENSGT00390000015899 #37	ENSGT00390000006367.c
Mustelinae	ANCESTRAL SPECIES	93	ENSGT01030000234535.D	ENSGT00390000000212	ENSGT00950000182939.b.a.b	ENSGT00940000156122	ENSGT00390000009532.A.d.a	ENSGT00530000063722.a.b	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182839.B.a.a #15	ENSGT00940000161014 #16	ENSGT00390000007747 #17	ENSGT00940000156039 #20	ENSGT00390000002793 #21	ENSGT00390000018003.b #22	ENSGT00390000008702 #24	ENSGT00390000014557 #25	ENSGT00940000153544.b #28	ENSGT00940000160423 #29	ENSGT00940000153380.A #30	ENSGT00390000018322 #26	ENSGT01050000244951.a.a #31	ENSGT00390000005178 #32	ENSGT00390000003443.f #33	ENSGT00940000153377.C #34	ENSGT00940000160124 #35	ENSGT00390000004933 #36	ENSGT00390000015899 #37	ENSGT00390000006367.c	ENSGT00530000063113.A
Ferret	MODERN SPECIES	393					ENSMPUG00000010205	IRAG2 (ENSMPUG00000010212)	DNAI7 (ENSMPUG00000010283)	KRAS (ENSMPUG00000010291)	LMNTD1 (ENSMPUG00000010334)	RASSF8 (ENSMPUG00000010343) #15	ENSMPUG00000010346 #16	SSPN (ENSMPUG00000010350) #17	ENSMPUG00000010363	ITPR2 (ENSMPUG00000010371) #20	INTS13 (ENSMPUG00000010392) #21	FGFR1OP2 (ENSMPUG00000010483) #22	TM7SF3 (ENSMPUG00000010491) #24	MED21 (ENSMPUG00000010498) #25	STK38L (ENSMPUG00000010502) #28	BMAL2 (ENSMPUG00000010512) #29	SMCO2 (ENSMPUG00000010518) #30	ENSMPUG00000010525 #26
American mink	MODERN SPECIES	96	C2CD5 (ENSNVIG00000000073)	ETNK1 (ENSNVIG00000000767)	ENSNVIG00000000776	SOX5 (ENSNVIG00000000784)	Q68DQ7 (ENSNVIG00000000861)	IRAG2 (ENSNVIG00000000935)	DNAI7 (ENSNVIG00000000988)	ETFRF1 (ENSNVIG00000001147)	RASK (ENSNVIG00000001175)	LMNTD1 (ENSNVIG00000001215)	RASSF8 (ENSNVIG00000001234) #15	ENSNVIG00000001271 #16	SSPN (ENSNVIG00000001285) #17	ITPR2 (ENSNVIG00000001309) #20	INTS13 (ENSNVIG00000001404) #21	ENSNVIG00000001439 #22	TM7SF3 (ENSNVIG00000001450) #24	MED21 (ENSNVIG00000001510) #25	ENSNVIG00000001519	STK38L (ENSNVIG00000001523) #28	BMAL2 (ENSNVIG00000001547) #29	SMCO2 (ENSNVIG00000001750) #30	PPFIBP1 (ENSNVIG00000001780) #31	C12orf71 (ENSNVIG00000001995) #26	REP15 (ENSNVIG00000002007) #32	RT35 (ENSNVIG00000002013) #33	MANSC4 (ENSNVIG00000002046) #34	KLHL42 (ENSNVIG00000002055) #35
Ursidae	ANCESTRAL SPECIES	25	ENSGT01030000234535.D	ENSGT00390000000212	ENSGT00950000182939.b.a.b	ENSGT00940000156122	ENSGT00390000009532.A.d.a	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00950000182839.B.a.a #15	ENSGT00940000161014 #16	ENSGT00390000007747 #17	ENSGT00940000156039 #20	ENSGT01030000234582.e.a.j	ENSGT00390000002793 #21	ENSGT00390000018003.b #22	ENSGT00970000193562	ENSGT00390000008702 #24	ENSGT00390000014557 #25	ENSGT00940000153544.b #28	ENSGT00940000160423 #29	ENSGT00940000153380.A #30	ENSGT00390000018322 #26	ENSGT01050000244951.a.a #31	ENSGT00390000005178 #32	ENSGT00390000003443 #33	ENSGT00940000153377.C #34	ENSGT00940000160124 #35	ENSGT00390000004933 #36	ENSGT00390000015899 #37	ENSGT00390000006367.c
Giant Panda	MODERN SPECIES	7	ST8SIA1 (ENSAMEG00000007885)	C2CD5 (ENSAMEG00000007770)	ETNK1 (ENSAMEG00000007754)	SOX5 (ENSAMEG00000007732)	BCAT1 (ENSAMEG00000007615)	IRAG2 (ENSAMEG00000007590)	DNAI7 (ENSAMEG00000007559)	ETFRF1 (ENSAMEG00000030820)	ENSAMEG00000007529	RASSF8 (ENSAMEG00000011910) #15	BHLHE41 (ENSAMEG00000030378) #16	SSPN (ENSAMEG00000011902) #17	ITPR2 (ENSAMEG00000011767) #20	ENSAMEG00000011761	INTS13 (ENSAMEG00000011715) #21	FGFR1OP2 (ENSAMEG00000011692) #22	TM7SF3 (ENSAMEG00000011677) #24	MED21 (ENSAMEG00000011670) #25	STK38L (ENSAMEG00000011633) #28	BMAL2 (ENSAMEG00000011610) #29	SMCO2 (ENSAMEG00000011608) #30	PPFIBP1 (ENSAMEG00000011565) #31	ENSAMEG00000011606 #26	REP15 (ENSAMEG00000020274) #32	MRPS35 (ENSAMEG00000011553) #33	MANSC4 (ENSAMEG00000011552) #34	ENSAMEG00000026959 #35	PTHLH (ENSAMEG00000011537) #36	CCDC91 (ENSAMEG00000011532) #37	FAR2 (ENSAMEG00000005871)	ERGIC2 (ENSAMEG00000005912)
Ursus	ANCESTRAL SPECIES	155	ENSGT00390000000212	ENSGT00950000182939.b.a.b	ENSGT00950000185059	ENSGT00940000156122	ENSGT00390000009532.A.d.a	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00950000182839.B.a.a #15	ENSGT00940000161014 #16	ENSGT00390000007747 #17	ENSGT00940000156039 #20	ENSGT01030000234582.e.a.j	ENSGT00390000002793 #21	ENSGT00390000018003.b #22	ENSGT00970000193562	ENSGT00390000008702 #24	ENSGT00390000014557 #25	ENSGT00940000153544.b #28	ENSGT00940000160423 #29
Polar bear	MODERN SPECIES	182	ETNK1 (ENSUMAG00000002922)	ENSUMAG00000002938	ENSUMAG00000002956	ENSUMAG00000003043	BCAT1 (ENSUMAG00000003124)	IRAG2 (ENSUMAG00000003170)	DNAI7 (ENSUMAG00000003217)	ETFRF1 (ENSUMAG00000003271)	KRAS (ENSUMAG00000003274)	RASSF8 (ENSUMAG00000003293) #15	ENSUMAG00000003300 #16	SSPN (ENSUMAG00000003311) #17	ITPR2 (ENSUMAG00000003322) #20	ENSUMAG00000003389	INTS13 (ENSUMAG00000003398) #21	FGFR1OP2 (ENSUMAG00000003427) #22	ENSUMAG00000003437	TM7SF3 (ENSUMAG00000003462) #24	ENSUMAG00000003616 #25	STK38L (ENSUMAG00000003628) #28	BMAL2 (ENSUMAG00000003681) #29
American black bear	DUPLICATION
American black bear	MODERN SPECIES	1610															ENSUAMG00000008867	ENSUAMG00000008871 #22	HADHB (ENSUAMG00000008876)	HADHA (ENSUAMG00000008883)	GAREM2 (ENSUAMG00000008890)	RAB10 (ENSUAMG00000008895)
American black bear	MODERN SPECIES	4673														INTS13 (ENSUAMG00000001980) #21	ENSUAMG00000001969	FGFR1OP2 (ENSUAMG00000001958) #22	TM7SF3 (ENSUAMG00000001945) #24	ENSUAMG00000001943 #25
Laurasiatheria_c	ANCESTRAL SPECIES	5	ENSGT00390000000212	ENSGT00950000182939.b.a.b	ENSGT00940000156122	ENSGT00390000009532.A.d.a	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182839.B.a.a #15	ENSGT00940000161014 #16	ENSGT00390000007747 #17	ENSGT00940000156039 #20	ENSGT00940000167397.b	ENSGT00390000002793 #21	ENSGT00390000018003.b #22	ENSGT00390000008702 #24	ENSGT00390000014557 #25	ENSGT00940000153544.b #28	ENSGT00940000160423 #29	ENSGT00940000153380.A #30	ENSGT00390000018322 #26	ENSGT01050000244951.a.a #31	ENSGT00390000005178 #32	ENSGT00390000003443 #33	ENSGT00940000153377.C #34	ENSGT00940000160124 #35	ENSGT00390000004933 #36	ENSGT00390000015899 #37	ENSGT00390000006367.c	ENSGT00530000063113.A
Equus	ANCESTRAL SPECIES	16	ENSGT00390000000212	ENSGT00950000182939.b.a.b	ENSGT00940000156122	ENSGT00390000009532.A.d.a	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182839.B.a.a #15	ENSGT00940000161014 #16	ENSGT00390000007747 #17	ENSGT00940000156039 #20	ENSGT00940000167397.b	ENSGT00390000002793 #21	ENSGT00390000018003.b #22	ENSGT00390000008702 #24	ENSGT00390000014557 #25	ENSGT00940000153544.b #28	ENSGT00940000160423 #29	ENSGT00940000153380.A #30	ENSGT00390000018322 #26	ENSGT01050000244951.a.a #31	ENSGT00390000005178 #32	ENSGT00390000003443 #33	ENSGT00940000153377.C #34	ENSGT00940000160124 #35	ENSGT00390000004933 #36	ENSGT00390000015899 #37	ENSGT00390000006367.c	ENSGT00530000063113.A
Horse	MODERN SPECIES	27	ETNK1 (ENSECAG00000007231)	SOX5 (ENSECAG00000013978)	BCAT1 (ENSECAG00000020973)	IRAG2 (ENSECAG00000009290)	DNAI7 (ENSECAG00000015808)	ETFRF1 (ENSECAG00000028314)	KRAS (ENSECAG00000019522)	LMNTD1 (ENSECAG00000021424)	ENSECAG00000054536	ENSECAG00000044737	RASSF8 (ENSECAG00000022648) #15	BHLHE41 (ENSECAG00000034955) #16	SSPN (ENSECAG00000007530) #17	ITPR2 (ENSECAG00000008131) #20	INTS13 (ENSECAG00000009087) #21	FGFR1OP2 (ENSECAG00000016890) #22	TM7SF3 (ENSECAG00000017496) #24	MED21 (ENSECAG00000023171) #25	STK38L (ENSECAG00000023690) #28	ARNTL2 (ENSECAG00000009925) #29	SMCO2 (ENSECAG00000015434) #30	PPFIBP1 (ENSECAG00000016652) #31	C6H12orf71 (ENSECAG00000015511) #26	REP15 (ENSECAG00000010853) #32	MRPS35 (ENSECAG00000010929) #33	MANSC4 (ENSECAG00000013446) #34	KLHL42 (ENSECAG00000036387) #35	ENSECAG00000033589	PTHLH (ENSECAG00000014708) #36	CCDC91 (ENSECAG00000014912) #37	FAR2 (ENSECAG00000018016)
Donkey	MODERN SPECIES	28	C2CD5 (ENSEASG00005013950)	ETNK1 (ENSEASG00005013939)	SOX5 (ENSEASG00005013931)	BCAT1 (ENSEASG00005013924)	ENSEASG00005025148	DNAI7 (ENSEASG00005013908)	ETFRF1 (ENSEASG00005033483)	ENSEASG00005013898	LMNTD1 (ENSEASG00005013897)	RASSF8 (ENSEASG00005013894) #15	BHLHE41 (ENSEASG00005032416) #16	SSPN (ENSEASG00005013891) #17	ENSEASG00005030774 #20	ENSEASG00005024061	INTS13 (ENSEASG00005006681) #21	FGFR1OP2 (ENSEASG00005006675) #22	TM7SF3 (ENSEASG00005006672) #24	MED21 (ENSEASG00005006670) #25	STK38L (ENSEASG00005006667) #28	BMAL2 (ENSEASG00005006662) #29	SMCO2 (ENSEASG00005006659) #30	PPFIBP1 (ENSEASG00005006651) #31	ENSEASG00005006657 #26	REP15 (ENSEASG00005024342) #32	MRPS35 (ENSEASG00005006645) #33	MANSC4 (ENSEASG00005006644) #34	KLHL42 (ENSEASG00005006642) #35	PTHLH (ENSEASG00005006639) #36	CCDC91 (ENSEASG00005006637) #37	FAR2 (ENSEASG00005006636)	ERGIC2 (ENSEASG00005006634)
Chiroptera	ANCESTRAL SPECIES	4	ENSGT01030000234535.D	ENSGT00390000000212	ENSGT00950000182939.b.a.b	ENSGT00940000156122	ENSGT00390000009532.A.d.a	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182839.B.a.a #15	ENSGT00940000161014 #16	ENSGT00390000007747 #17	ENSGT00940000156039 #20	ENSGT00390000002793 #21	ENSGT00390000018003.b #22	ENSGT00390000008702 #24	ENSGT00390000014557 #25	ENSGT00940000153544.b #28	ENSGT00940000160423 #29	ENSGT00940000153380.A #30	ENSGT00390000018322 #26	ENSGT01050000244951.a.a #31	ENSGT00390000005178 #32	ENSGT00390000003443 #33	ENSGT00940000153377.C #34	ENSGT00940000160124 #35	ENSGT00390000004933 #36	ENSGT00390000015899 #37	ENSGT00390000006367.c	ENSGT00530000063113.A
Megabat	MODERN SPECIES	286														ITPR2 (ENSPVAG00000013345) #20	INTS13 (ENSPVAG00000013350) #21	FGFR1OP2 (ENSPVAG00000013353) #22	TM7SF3 (ENSPVAG00000013355) #24	MED21 (ENSPVAG00000013357) #25
Microchiroptera	ANCESTRAL SPECIES	8	ENSGT01030000234535.D	ENSGT00390000000212	ENSGT00950000182939.b.a.b	ENSGT00940000156122	ENSGT00390000009532.A.d.a	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182839.B.a.a #15	ENSGT00940000161014 #16	ENSGT00390000007747 #17	ENSGT00940000156039 #20	ENSGT00390000002793 #21	ENSGT00390000018003.b #22	ENSGT00390000008702 #24	ENSGT00390000014557 #25	ENSGT00940000153544.b #28	ENSGT00940000160423 #29	ENSGT00940000153380.A #30	ENSGT00390000018322 #26	ENSGT01050000244951.a.a #31	ENSGT00390000005178 #32	ENSGT00390000003443 #33	ENSGT00940000153377.C #34	ENSGT00940000160124 #35	ENSGT00390000004933 #36	ENSGT00390000015899 #37	ENSGT00390000006367.c	ENSGT00530000063113.A
Microbat	MODERN SPECIES	1387												BHLHE41 (ENSMLUG00000028371) #16	SSPN (ENSMLUG00000011338) #17	ITPR2 (ENSMLUG00000011355) #20	INTS13 (ENSMLUG00000012374) #21	FGFR1OP2 (ENSMLUG00000007652) #22	TM7SF3 (ENSMLUG00000007662) #24	ENSMLUG00000007678 #25
Greater horseshoe bat	MODERN SPECIES	1	ST8SIA1 (ENSRFEG00010000498)	C2CD5 (ENSRFEG00010000717)	ETNK1 (ENSRFEG00010001194)	ENSRFEG00010001212	ENSRFEG00010001226	SOX5 (ENSRFEG00010001299)	BCAT1 (ENSRFEG00010001433)	ENSRFEG00010001489	DNAI7 (ENSRFEG00010001662)	ETFRF1 (ENSRFEG00010001789)	RASSF8 (ENSRFEG00010001871) #15	BHLHE41 (ENSRFEG00010001889) #16	SSPN (ENSRFEG00010001911) #17	ITPR2 (ENSRFEG00010002029) #20	INTS13 (ENSRFEG00010002148) #21	FGFR1OP2 (ENSRFEG00010002209) #22	TM7SF3 (ENSRFEG00010002233) #24	ENSRFEG00010002256 #25	ENSRFEG00010002266	STK38L (ENSRFEG00010002281) #28	BMAL2 (ENSRFEG00010002334) #29	SMCO2 (ENSRFEG00010002436) #30	PPFIBP1 (ENSRFEG00010002571) #31	C12orf71 (ENSRFEG00010002877) #26	REP15 (ENSRFEG00010002894) #32	MRPS35 (ENSRFEG00010002911) #33	MANSC4 (ENSRFEG00010002930) #34	KLHL42 (ENSRFEG00010002946) #35	PTHLH (ENSRFEG00010002971) #36	CCDC91 (ENSRFEG00010003047) #37	FAR2 (ENSRFEG00010003120)
Atlantogenata	ANCESTRAL SPECIES	5	ENSGT01030000234535.D	ENSGT00390000000212	ENSGT00950000182939.b.a.b	ENSGT00940000156122	ENSGT00390000009532.A.d.a	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182839.B.a.a #15	ENSGT00940000161014 #16	ENSGT00390000007747 #17	ENSGT00940000156039 #20	ENSGT00390000002793 #21	ENSGT00390000018003.b #22	ENSGT00390000008702 #24	ENSGT00390000014557 #25	ENSGT00940000153544.b #28	ENSGT00940000160423 #29	ENSGT00940000153380.A #30	ENSGT00390000018322 #26	ENSGT01050000244951.a.a #31	ENSGT00390000005178 #32	ENSGT00390000003443 #33	ENSGT00940000153377.C #34	ENSGT00940000160124 #35	ENSGT00390000004933 #36	ENSGT00390000015899 #37	ENSGT00390000006367.c	ENSGT00530000063113.A
Xenarthra	ANCESTRAL SPECIES	126						ENSGT00940000156122	ENSGT00390000009532.A.d.a	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00950000182839.B.a.a #15	ENSGT00390000007747 #17	ENSGT00940000156039 #20	ENSGT00390000002793 #21	ENSGT00390000018003.b #22	ENSGT00390000008702 #24	ENSGT00390000014557 #25	ENSGT00940000153544.b #28	ENSGT00940000160423 #29	ENSGT00940000153380.A #30	ENSGT01050000244951.a.a #31	ENSGT00390000003443 #33	ENSGT00940000153377.C #34	ENSGT00940000160124 #35	ENSGT00390000004933 #36	ENSGT00390000015899 #37
Sloth	MODERN SPECIES	11691																FGFR1OP2 (ENSCHOG00000011615) #22
Armadillo	MODERN SPECIES	4066					SOX5 (ENSDNOG00000019346)	BCAT1 (ENSDNOG00000005608)	ENSDNOG00000032383	DNAI7 (ENSDNOG00000000445)	ETFRF1 (ENSDNOG00000018534)	KRAS (ENSDNOG00000046741)	ENSDNOG00000044438	RASSF8 (ENSDNOG00000048366) #15	SSPN (ENSDNOG00000045508) #17	ITPR2 (ENSDNOG00000005229) #20	INTS13 (ENSDNOG00000012051) #21	FGFR1OP2 (ENSDNOG00000006966) #22	TM7SF3 (ENSDNOG00000010018) #24	MED21 (ENSDNOG00000010041) #25	ENSDNOG00000025573 #28
Afrotheria	ANCESTRAL SPECIES	56	ENSGT01030000234535.D	ENSGT00390000000212	ENSGT00950000182939.b.a.b	ENSGT00940000156122	ENSGT00390000009532.A.d.a	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182839.B.a.a #15	ENSGT00940000161014 #16	ENSGT00390000007747 #17	ENSGT00940000156039 #20	ENSGT00390000002793 #21	ENSGT00390000018003.b #22	ENSGT00390000008702 #24	ENSGT00390000014557 #25	ENSGT00940000153544.b #28	ENSGT00940000160423 #29	ENSGT00940000153380.A #30	ENSGT00390000018322 #26	ENSGT01050000244951.a.a #31	ENSGT00390000005178 #32	ENSGT00390000003443 #33	ENSGT00940000153377.C #34	ENSGT00940000160124 #35	ENSGT00390000004933 #36	ENSGT00390000006367.c	ENSGT00530000063113.A
Tenrec	MODERN SPECIES	4637															INTS13 (ENSETEG00000020311) #21	ENSETEG00000020312 #22
Afrotheria_a	ANCESTRAL SPECIES	53	ENSGT01030000234535.D	ENSGT00390000000212	ENSGT00950000182939.b.a.b	ENSGT00940000156122	ENSGT00390000009532.A.d.a	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182839.B.a.a #15	ENSGT00940000161014 #16	ENSGT00390000007747 #17	ENSGT00940000156039 #20	ENSGT00390000002793 #21	ENSGT00390000018003.b #22	ENSGT00390000008702 #24	ENSGT00390000014557 #25	ENSGT00940000153544.b #28	ENSGT00940000160423 #29	ENSGT00940000153380.A #30	ENSGT00390000018322 #26	ENSGT01050000244951.a.a #31	ENSGT00390000005178 #32	ENSGT00390000003443 #33	ENSGT00940000153377.C #34	ENSGT00940000160124 #35	ENSGT00390000004933 #36	ENSGT00390000006367.c	ENSGT00530000063113.A
Elephant	MODERN SPECIES	196	ST8SIA1 (ENSLAFG00000010423)	C2CD5 (ENSLAFG00000022820)	ETNK1 (ENSLAFG00000015898)	SOX5 (ENSLAFG00000014616)	BCAT1 (ENSLAFG00000017969)	IRAG2 (ENSLAFG00000012434)	DNAI7 (ENSLAFG00000012438)	ETFRF1 (ENSLAFG00000008272)	KRAS (ENSLAFG00000029239)	LMNTD1 (ENSLAFG00000004100)	RASSF8 (ENSLAFG00000026594) #15	ENSLAFG00000030711 #16	SSPN (ENSLAFG00000005676) #17	ENSLAFG00000005681 #20	INTS13 (ENSLAFG00000012475) #21	FGFR1OP2 (ENSLAFG00000012476) #22	TM7SF3 (ENSLAFG00000012482) #24	MED21 (ENSLAFG00000030391) #25	STK38L (ENSLAFG00000020791) #28	BMAL2 (ENSLAFG00000002612) #29	SMCO2 (ENSLAFG00000002614) #30	C12orf71 (ENSLAFG00000027809) #26	PPFIBP1 (ENSLAFG00000010485) #31	MRPS35 (ENSLAFG00000010490) #33	MANSC4 (ENSLAFG00000010493) #34	KLHL42 (ENSLAFG00000027183) #35	PTHLH (ENSLAFG00000016512) #36	FAR2 (ENSLAFG00000004527)	ERGIC2 (ENSLAFG00000010837)	ENSLAFG00000003057	TMTC1 (ENSLAFG00000003063)
Hyrax	MODERN SPECIES	4122															INTS13 (ENSPCAG00000008225) #21	FGFR1OP2 (ENSPCAG00000008308) #22	TM7SF3 (ENSPCAG00000008341) #24
Marsupialia	ANCESTRAL SPECIES	4	ENSGT00950000182939.b.a.b	ENSGT00390000009210	ENSGT00940000156122	ENSGT00390000009532.A.d.a	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182839.B.a.a #15	ENSGT00940000161014 #16	ENSGT00390000007747 #17	ENSGT00940000156039 #20	ENSGT00940000155614	ENSGT00390000002793 #21	ENSGT00390000018003.b #22	ENSGT00970000193562	ENSGT00390000008702 #24	ENSGT00390000014557 #25	ENSGT00940000153544.b.m.a #28	ENSGT00790000123099	ENSGT00950000182835.d.b	ENSGT00940000157638	ENSGT00940000158123	ENSGT00940000158317	ENSGT00940000157945	ENSGT00390000005903	ENSGT00390000006837	ENSGT00900000143702	ENSGT00710000106806	ENSGT00940000159247
Opossum	DUPLICATION
Opossum	DUPLICATION
Opossum	DUPLICATION
Opossum	MODERN SPECIES		UBE2G1 (ENSMODG00000024678)	ENSMODG00000051343	ENSMODG00000048716	NR2F2 (ENSMODG00000012819)	ENSMODG00000012810	ENSMODG00000001936	ENSMODG00000045377	ARRDC4 (ENSMODG00000012796)	ENSMODG00000028693	ENSMODG00000012771	IGF1R (ENSMODG00000012761)	ENSMODG00000039789	ENSMODG00000012752	TTC23 (ENSMODG00000012741)	LRRC28 (ENSMODG00000012729)	ENSMODG00000012734 #22	MEF2A (ENSMODG00000012725)	LYSMD4 (ENSMODG00000012716)	ADAMTS17 (ENSMODG00000012713)	CERS3 (ENSMODG00000012165)	LINS1 (ENSMODG00000012160)	ASB7 (ENSMODG00000038455)	ALDH1A3 (ENSMODG00000012141)	LRRK1 (ENSMODG00000012068)	CHSY1 (ENSMODG00000012037)	SELENOS (ENSMODG00000012032)	SNRPA1 (ENSMODG00000012020)	PCSK6 (ENSMODG00000012001)	TM2D3 (ENSMODG00000011956)	TARS3 (ENSMODG00000011941)	TJP1 (ENSMODG00000011885)
Opossum	MODERN SPECIES		ENSMODG00000023081	ENSMODG00000023080	ENSMODG00000045063	ENSMODG00000047520	ENSMODG00000050365	ENSMODG00000007750	ENSMODG00000023079	ENSMODG00000007702	ENSMODG00000045190	ENSMODG00000045854	ENSMODG00000007741	ENSMODG00000023077	ENSMODG00000007896	ENSMODG00000051132	ENSMODG00000037214	ENSMODG00000013714 #22	ENSMODG00000051112	ENSMODG00000007904	ENSMODG00000007910	ENSMODG00000007948	ENSMODG00000041989	ENSMODG00000008031	ENSMODG00000043313	ADAMTS18 (ENSMODG00000008070)	ENSMODG00000008089	ENSMODG00000038893	VAT1L (ENSMODG00000008102)	CLEC3A (ENSMODG00000008109)	ENSMODG00000040703	ENSMODG00000008124	ENSMODG00000047532
Opossum	MODERN SPECIES		CNOT6 (ENSMODG00000003979)	GFPT2 (ENSMODG00000003969)	MAPK9 (ENSMODG00000003946)	ENSMODG00000003922	FLT4 (ENSMODG00000003918)	ENSMODG00000003904	TBC1D9B (ENSMODG00000003882)	SQSTM1 (ENSMODG00000003806)	MGAT4B (ENSMODG00000003778)	LTC4S (ENSMODG00000003733)	MAML1 (ENSMODG00000003725)	ENSMODG00000003708	ENSMODG00000003673	L3MBTL1 (ENSMODG00000003647)	SRSF6 (ENSMODG00000003107)	ENSMODG00000023076 #22	TOX2 (ENSMODG00000003070)	SNTA1 (ENSMODG00000003050)	CBFA2T2 (ENSMODG00000003023)	NECAB3 (ENSMODG00000002977)	ENSMODG00000002993	ENSMODG00000002988	E2F1 (ENSMODG00000002875)	PXMP4 (ENSMODG00000002864)	ZNF341 (ENSMODG00000002856)	CHMP4B (ENSMODG00000002830)	ENSMODG00000002836	RALY (ENSMODG00000002819)	EIF2S2 (ENSMODG00000002805)	ENSMODG00000002765	ASIP (ENSMODG00000002762)
Opossum	MODERN SPECIES	7	ENSMODG00000018535	IRAK4 (ENSMODG00000018536)	ENSMODG00000025457	ABCD2 (ENSMODG00000018538)	ENSMODG00000039233	ENSMODG00000042610	ENSMODG00000018544	SLC2A13 (ENSMODG00000018552)	LRRK2 (ENSMODG00000018556)	RASSF8 (ENSMODG00000016548) #15	BHLHE41 (ENSMODG00000016551) #16	ENSMODG00000016554 #17	ITPR2 (ENSMODG00000016591) #20	SMC1A (ENSMODG00000016607)	INTS13 (ENSMODG00000016614) #21	ENSMODG00000016618 #22	ENSMODG00000045064	TM7SF3 (ENSMODG00000016621) #24	MED21 (ENSMODG00000047408) #25	ENSMODG00000039197	ENSMODG00000016636 #28	RBM17 (ENSMODG00000016648)	PFKFB3 (ENSMODG00000016654)	PRKCQ (ENSMODG00000016663)	ENSMODG00000038661	SFMBT2 (ENSMODG00000016677)	ITIH5 (ENSMODG00000016687)	ITIH2 (ENSMODG00000016710)	KIN (ENSMODG00000016717)	ATP5F1C (ENSMODG00000016720)	ENSMODG00000038818
Marsupialia_b	ANCESTRAL SPECIES	12	ENSGT00950000182939.b.a.b	ENSGT00390000009210	ENSGT00940000156122	ENSGT00390000009532.A.d.a	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182839.B.a.a #15	ENSGT00940000161014 #16	ENSGT00390000007747 #17	ENSGT00940000156039 #20	ENSGT00940000155614	ENSGT00390000002793 #21	ENSGT00390000018003.b #22	ENSGT00970000193562	ENSGT00390000008702 #24	ENSGT00390000014557 #25	ENSGT00940000153544.b.m.a #28	ENSGT00940000160423 #29	ENSGT00790000123099	ENSGT00950000182835.d.b	ENSGT00940000157638	ENSGT00940000158123	ENSGT00940000158317	ENSGT00940000157945	ENSGT00390000005903	ENSGT00390000006837	ENSGT00710000106806	ENSGT00940000159247
Diprotodontia	ANCESTRAL SPECIES	16	ENSGT00950000182939.b.a.b	ENSGT00390000009210	ENSGT00940000156122	ENSGT00390000009532.A.d.a	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182839.B.a.a #15	ENSGT00940000161014 #16	ENSGT00390000007747 #17	ENSGT00940000156039 #20	ENSGT00390000002793 #21	ENSGT00970000193562	ENSGT00390000018003.b #22	ENSGT00390000008702 #24	ENSGT00390000014557 #25	ENSGT00940000153544.b.m.a #28	ENSGT00940000153544.b.m.b #28	ENSGT00940000160423 #29	ENSGT00790000123099	ENSGT00950000182835.d.b	ENSGT00940000157638	ENSGT00940000158123	ENSGT00940000158317	ENSGT00940000157945	ENSGT00390000005903	ENSGT00390000006837	ENSGT00710000106806	ENSGT00940000159247
Diprotodontia_a	ANCESTRAL SPECIES	18	ENSGT00390000009210	ENSGT00940000156122	ENSGT00390000009532.A.d.a	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182839.B.a.a #15	ENSGT00940000161014 #16	ENSGT00390000007747 #17	ENSGT00940000155614	ENSGT00940000156039 #20	ENSGT00390000002793 #21	ENSGT00970000193562	ENSGT00390000018003.b #22	ENSGT00390000008702 #24	ENSGT00390000014557 #25	ENSGT00940000153544.b.m.a.a #28	ENSGT00940000160423 #29	ENSGT00950000182835.d.b	ENSGT00940000157638	ENSGT00940000158123	ENSGT00940000158317	ENSGT00940000157945	ENSGT00390000005903	ENSGT00390000006837	ENSGT00710000106806	ENSGT00940000159247	ENSGT00940000164454.g	ENSGT00940000155461.E
Common wonbat	DUPLICATION
Common wonbat	MODERN SPECIES	1064	ST8SIA1 (ENSVURG00010016229)	C2CD5 (ENSVURG00010016161)	ETNK1 (ENSVURG00010016127)	ENSVURG00010016116	SOX5 (ENSVURG00010016055)	BCAT1 (ENSVURG00010015554)	DNAI7 (ENSVURG00010015507)	ETFRF1 (ENSVURG00010015499)	KRAS (ENSVURG00010015490)	RASSF8 (ENSVURG00010015473) #15	BHLHE41 (ENSVURG00010015466) #16	ENSVURG00010015454 #17	SMC1A (ENSVURG00010015442)	ITPR2 (ENSVURG00010015309) #20	INTS13 (ENSVURG00010015245) #21	ENSVURG00010015223 #22	TM7SF3 (ENSVURG00010015203) #24	MED21 (ENSVURG00010015164) #25	STK38L (ENSVURG00010015140) #28	BMAL2 (ENSVURG00010015116) #29	ENSVURG00010015086	PRKCQ (ENSVURG00010014603)	ENSVURG00010014550	ITIH5 (ENSVURG00010014526)	ITIH2 (ENSVURG00010014510)	KIN (ENSVURG00010014473)	ENSVURG00010014444	TAF3 (ENSVURG00010014417)	GATA3 (ENSVURG00010014394)	ENSVURG00010014377	ENSVURG00010014355
Common wonbat	MODERN SPECIES	740	PROSER1 (ENSVURG00010017274)	STOML3 (ENSVURG00010017258)	FREM2 (ENSVURG00010017236)	UFM1 (ENSVURG00010017221)	ENSVURG00010017206	TRPC4 (ENSVURG00010017160)	POSTN (ENSVURG00010016998)	ENSVURG00010016975	SUPT20H (ENSVURG00010016704)	ENSVURG00010016647	ALG5 (ENSVURG00010016628)	ENSVURG00010016609	SERTM1 (ENSVURG00010016595)	CCNA1 (ENSVURG00010016560)	ENSVURG00010016548	ENSVURG00010016542 #22
koala	MODERN SPECIES	157			BCAT1 (ENSPCIG00000028646)	IRAG2 (ENSPCIG00000014217)	DNAI7 (ENSPCIG00000014221)	ENSPCIG00000032167	KRAS (ENSPCIG00000014229)	ENSPCIG00000028658	RASSF8 (ENSPCIG00000028660) #15	BHLHE41 (ENSPCIG00000028661) #16	SSPN (ENSPCIG00000002872) #17	SMC1A (ENSPCIG00000013481)	ITPR2 (ENSPCIG00000013497) #20	INTS13 (ENSPCIG00000019233) #21	ENSPCIG00000019238	FGFR1OP2 (ENSPCIG00000019236) #22	TM7SF3 (ENSPCIG00000019239) #24	MED21 (ENSPCIG00000019241) #25	ENSPCIG00000035681	ENSPCIG00000019245 #28	ENSPCIG00000032191 #28	BMAL2 (ENSPCIG00000019259) #29	ENSPCIG00000019260	PFKFB3 (ENSPCIG00000019262)	PRKCQ (ENSPCIG00000018916)	SFMBT2 (ENSPCIG00000017345)	ITIH5 (ENSPCIG00000017342)	ITIH2 (ENSPCIG00000017340)	ENSPCIG00000017339	KIN (ENSPCIG00000017338)	ATP5F1C (ENSPCIG00000017337)
Wallaby	MODERN SPECIES	2044																ENSMEUG00000004570 #22
Tasmanian devil	MODERN SPECIES	4	C2CD5 (ENSSHAG00000026240)	ETNK1 (ENSSHAG00000024329)	ENSSHAG00000028766	SOX5 (ENSSHAG00000032245)	BCAT1 (ENSSHAG00000002407)	IRAG2 (ENSSHAG00000004469)	DNAI7 (ENSSHAG00000005318)	KRAS (ENSSHAG00000006631)	ENSSHAG00000009195	RASSF8 (ENSSHAG00000012373) #15	BHLHE41 (ENSSHAG00000028369) #16	SSPN (ENSSHAG00000028577) #17	ITPR2 (ENSSHAG00000002089) #20	ENSSHAG00000006912	INTS13 (ENSSHAG00000009510) #21	FGFR1OP2 (ENSSHAG00000009822) #22	ENSSHAG00000022761	TM7SF3 (ENSSHAG00000010020) #24	MED21 (ENSSHAG00000029070) #25	STK38L (ENSSHAG00000011764) #28	ENSSHAG00000025940 #29	ENSSHAG00000012480	ENSSHAG00000013183	PRKCQ (ENSSHAG00000014158)	SFMBT2 (ENSSHAG00000016894)	ITIH5 (ENSSHAG00000017819)	ITIH2 (ENSSHAG00000017960)	KIN (ENSSHAG00000018030)	ATP5F1C (ENSSHAG00000018089)	TAF3 (ENSSHAG00000025039)	GATA3 (ENSSHAG00000018350)
Platypus	MODERN SPECIES	11	C2CD5 (ENSOANG00000031241)	ETNK1 (ENSOANG00000041921)	SOX5 (ENSOANG00000042173)	BCAT1 (ENSOANG00000013411)	ENSOANG00000038600	ENSOANG00000045289	ETFRF1 (ENSOANG00000012351)	KRAS (ENSOANG00000037990)	ENSOANG00000043766	RASSF8 (ENSOANG00000046756) #15	ENSOANG00000040055 #16	SSPN (ENSOANG00000045085) #17	ITPR2 (ENSOANG00000047995) #20	INTS13 (ENSOANG00000020224) #21	ENSOANG00000049521	FGFR1OP2 (ENSOANG00000047307) #22	TM7SF3 (ENSOANG00000044283) #24	MED21 (ENSOANG00000040060) #25	STK38L (ENSOANG00000030510) #28	PPFIBP1 (ENSOANG00000006286) #31	RPL18A (ENSOANG00000009129)	KICS2 (ENSOANG00000043854)	SRGAP1 (ENSOANG00000047717)	RXYLT1 (ENSOANG00000008734)	AVPR1A (ENSOANG00000002085)	PPM1H (ENSOANG00000014788)	MON2 (ENSOANG00000010807)	USP15 (ENSOANG00000010808)	TAFA2 (ENSOANG00000014659)	SLC16A7 (ENSOANG00000009924)	LRIG3 (ENSOANG00000007758)
Sauria	ANCESTRAL SPECIES	4	ENSGT00940000153525	ENSGT00540000073481	ENSGT00390000018612.a.b	ENSGT00390000012501	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182839.B.a.a #15	ENSGT00940000161014 #16	ENSGT00390000007747 #17	ENSGT00940000156039 #20	ENSGT00940000167397.b	ENSGT00390000002793 #21	ENSGT00390000018003.b #22	ENSGT00390000008702 #24	ENSGT00390000014557 #25	ENSGT00940000162660.a	ENSGT00940000153544.b #28	ENSGT00940000160423 #29	ENSGT00940000169031	ENSGT01050000244951.a.a #31	ENSGT00390000005178 #32	ENSGT00940000153962.b	ENSGT00530000063825.A.c	ENSGT00510000047981.c	ENSGT00940000158466	ENSGT00950000182973.a.c.b	ENSGT00940000156720	ENSGT01030000235072
Archelosauria	ANCESTRAL SPECIES	3	ENSGT00990000203615.a.a.b	ENSGT00940000153525	ENSGT00540000073481	ENSGT00390000018612.a.b	ENSGT00390000012501	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182839.B.a.a #15	ENSGT00940000161014 #16	ENSGT00390000007747 #17	ENSGT00940000156039 #20	ENSGT00390000002793 #21	ENSGT00390000018003.b #22	ENSGT00390000008702 #24	ENSGT00390000014557 #25	ENSGT00940000162660.a	ENSGT00940000153544.b #28	ENSGT00940000160423 #29	ENSGT01050000244951.a.a #31	ENSGT00390000005178 #32	ENSGT00940000153962.b	ENSGT00530000063825.A.c	ENSGT00510000047981.c	ENSGT00940000158466	ENSGT00950000182973.a.c.b	ENSGT00940000156720	ENSGT01030000235072	ENSGT00390000013715
Archosauria	ANCESTRAL SPECIES	4	ENSGT00940000156680.b.b	ENSGT00990000203615.a.a.b	ENSGT00940000153525	ENSGT00390000018612.a.b	ENSGT00390000012501	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182839.B.a.a #15	ENSGT00940000161014 #16	ENSGT00390000007747 #17	ENSGT00940000156039 #20	ENSGT00390000002793 #21	ENSGT00390000018003.b #22	ENSGT00390000008702 #24	ENSGT00390000014557 #25	ENSGT00940000153544.b #28	ENSGT00940000160423 #29	ENSGT01050000244951.a.a #31	ENSGT00390000005178 #32	ENSGT00940000153962.b	ENSGT00530000063825.A.c	ENSGT00510000047981.c	ENSGT00940000158466	ENSGT00950000182973.a.c.b	ENSGT00940000156720	ENSGT01030000235072	ENSGT00390000013715	ENSGT00390000012980.a
Aves	ANCESTRAL SPECIES	1	ENSGT00940000156680.b.b	ENSGT00990000203615.a.a.b	ENSGT00940000153525	ENSGT00390000018612.a.b	ENSGT00390000012501	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182839.B.a.a #15	ENSGT00940000161014 #16	ENSGT00390000007747 #17	ENSGT00940000156039 #20	ENSGT00390000002793 #21	ENSGT00390000018003.b #22	ENSGT00390000008702 #24	ENSGT00390000014557 #25	ENSGT00940000153544.b #28	ENSGT00940000160423 #29	ENSGT01050000244951.a.a #31	ENSGT00390000005178 #32	ENSGT00940000153962.b	ENSGT00530000063825.A.c	ENSGT00510000047981.c	ENSGT00940000158466	ENSGT00950000182973.a.c.b	ENSGT00940000156720	ENSGT01030000235072	ENSGT00390000013715	ENSGT00390000012980.a
Neognathae	ANCESTRAL SPECIES	3	ENSGT00940000156680.b.b	ENSGT00990000203615.a.a.b	ENSGT00940000153525	ENSGT00390000018612.a.b	ENSGT00390000012501	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182839.B.a.a #15	ENSGT00940000161014 #16	ENSGT00390000007747 #17	ENSGT00940000156039 #20	ENSGT00390000002793 #21	ENSGT00390000018003.b #22	ENSGT00390000008702 #24	ENSGT00390000014557 #25	ENSGT00940000153544.b #28	ENSGT00940000160423 #29	ENSGT01050000244951.a.a #31	ENSGT00390000005178 #32	ENSGT00940000153962.b	ENSGT00530000063825.A.c	ENSGT00510000047981.c	ENSGT00940000158466	ENSGT00950000182973.a.c.b	ENSGT00940000156720	ENSGT01030000235072	ENSGT00390000013715	ENSGT00390000012980.a
Galloanserae	ANCESTRAL SPECIES	3	ENSGT00940000156680.b.b	ENSGT00990000203615.a.a.b	ENSGT00940000153525	ENSGT00390000018612.a.b	ENSGT00390000012501	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00990000206817	ENSGT00950000182839.B.a.a #15	ENSGT00940000161014 #16	ENSGT00390000007747 #17	ENSGT00940000156039 #20	ENSGT00390000002793 #21	ENSGT00390000018003.b #22	ENSGT00390000008702 #24	ENSGT00390000014557 #25	ENSGT00940000153544.b #28	ENSGT00940000160423 #29	ENSGT01050000244951.a.a #31	ENSGT00390000005178 #32	ENSGT00940000153962.b	ENSGT00510000047981.c	ENSGT00940000158466	ENSGT00950000182973.a.c.b	ENSGT00940000156720	ENSGT01030000235072	ENSGT00390000013715	ENSGT00390000012980.a	ENSGT00390000006760
Anatidae	ANCESTRAL SPECIES	8	ENSGT00940000156680.b.b	ENSGT00990000203615.a.a.b	ENSGT00940000153525	ENSGT00390000018612.a.b	ENSGT00390000012501	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00990000206817	ENSGT00950000182839.B.a.a #15	ENSGT00940000161014 #16	ENSGT00390000007747 #17	ENSGT00940000156039 #20	ENSGT00390000002793 #21	ENSGT00390000018003.b #22	ENSGT00390000008702 #24	ENSGT00390000014557 #25	ENSGT00940000153544.b #28	ENSGT00940000160423 #29	ENSGT01050000244951.a.a #31	ENSGT00390000005178 #32	ENSGT00940000153962.b	ENSGT00510000047981.c	ENSGT00940000158466	ENSGT00950000182973.a.c.b	ENSGT00940000156720	ENSGT01030000235072	ENSGT00390000013715	ENSGT00390000012980.a	ENSGT00390000006760
Duck	MODERN SPECIES		KCNJ8 (ENSAPLG00000016438)	LDHB (ENSAPLG00000016403)	ENSAPLG00000026669	GYS2 (ENSAPLG00000016252)	SPX (ENSAPLG00000016220)	IRAG2 (ENSAPLG00000016181)	DNAI7 (ENSAPLG00000015977)	ETFRF1 (ENSAPLG00000015974)	KRAS (ENSAPLG00000015953)	ENSAPLG00000028893	RASSF8 (ENSAPLG00000024358) #15	BHLHE41 (ENSAPLG00000023232) #16	SSPN (ENSAPLG00000022486) #17	ITPR2 (ENSAPLG00000014956) #20	INTS13 (ENSAPLG00000007349) #21	FGFR1OP2 (ENSAPLG00000007905) #22	TM7SF3 (ENSAPLG00000008163) #24	ENSAPLG00000028939	MED21 (ENSAPLG00000017333) #25	STK38L (ENSAPLG00000008495) #28	BMAL2 (ENSAPLG00000008758) #29	ENSAPLG00000025790 #31	ENSAPLG00000009279 #31	REP15 (ENSAPLG00000001232) #32	CYB5R3 (ENSAPLG00000009751)	ENSAPLG00000021401	A4GALT (ENSAPLG00000001237)	ENSAPLG00000014423	ENSAPLG00000023088	ENSAPLG00000023309	PACSIN2 (ENSAPLG00000009134)
Pink-footed goose	MODERN SPECIES	235																FGFR1OP2 (ENSABRG00000003521) #22	TM7SF3 (ENSABRG00000003535) #24	MED21 (ENSABRG00000003551) #25	STK38L (ENSABRG00000003649) #28	BMAL2 (ENSABRG00000004330) #29	PPFIBP1 (ENSABRG00000004742) #31	REP15 (ENSABRG00000008500) #32	CYB5R3 (ENSABRG00000008517)	A4GALT (ENSABRG00000008681)	ARFGAP3 (ENSABRG00000008695)	PACSIN2 (ENSABRG00000008709)	TTLL1 (ENSABRG00000008733)	ENSABRG00000008742	MCAT (ENSABRG00000008755)	TSPO (ENSABRG00000008814)	TTLL12 (ENSABRG00000008846)
Phasianidae	ANCESTRAL SPECIES		ENSGT00390000004237	ENSGT00940000156680.b.b	ENSGT00990000203615.a.a.b	ENSGT00940000153525	ENSGT00390000018612.a.b	ENSGT00390000012501	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00950000182839.B.a.a #15	ENSGT00940000161014 #16	ENSGT00390000007747 #17	ENSGT00940000156039 #20	ENSGT00390000002793 #21	ENSGT00390000018003.b #22	ENSGT00390000008702 #24	ENSGT00390000014557 #25	ENSGT00940000153544.b #28	ENSGT00940000160423 #29	ENSGT01050000244951.a.a #31	ENSGT00940000153962.b	ENSGT00510000047981.c	ENSGT00940000158466	ENSGT00950000182973.a.c.b	ENSGT00940000156720	ENSGT01030000235072	ENSGT00390000013715	ENSGT00390000012980.a	ENSGT00390000006760	ENSGT00940000153185.a.a.a
Phasianidae_b	ANCESTRAL SPECIES		ENSGT00390000004237	ENSGT00940000156680.b.b	ENSGT00990000203615.a.a.b	ENSGT00940000153525	ENSGT00390000018612.a.b	ENSGT00390000012501	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00950000182839.B.a.a #15	ENSGT00940000161014 #16	ENSGT00390000007747 #17	ENSGT00940000156039 #20	ENSGT00390000002793 #21	ENSGT00390000018003.b #22	ENSGT00390000008702 #24	ENSGT00390000014557 #25	ENSGT00940000153544.b #28	ENSGT00940000160423 #29	ENSGT01050000244951.a.a #31	ENSGT00940000153962.b	ENSGT00530000063825.A.c	ENSGT00940000157452.s.a.c.b	ENSGT00510000047981.c	ENSGT00940000158466	ENSGT00950000182973.a.c.b	ENSGT00940000156720	ENSGT01030000235072	ENSGT00390000013715	ENSGT00390000012980.a
Chicken	MODERN SPECIES		ABCC9 (ENSGALG00010013156)	KCNJ8 (ENSGALG00010013173)	LDHB (ENSGALG00010013184)	GYS2 (ENSGALG00010013201)	SPX (ENSGALG00010013963)	IRAG2 (ENSGALG00010014019)	DNAI7 (ENSGALG00010014154)	ETFRF1 (ENSGALG00010014213)	KRAS (ENSGALG00010014246)	RASSF8 (ENSGALG00010014328) #15	BHLHE41 (ENSGALG00010014338) #16	SSPN (ENSGALG00010014361) #17	ITPR2 (ENSGALG00010014477) #20	ENSGALG00010014697	INTS13 (ENSGALG00010014728) #21	FGFR1OP2 (ENSGALG00010014748) #22	TM7SF3 (ENSGALG00010014839) #24	MED21 (ENSGALG00010014861) #25	STK38L (ENSGALG00010012896) #28	ARNTL2 (ENSGALG00010012985) #29	PPFIBP1 (ENSGALG00010013123) #31	A4GALT (ENSGALG00010012867)	ENSGALG00010013167	ENSGALG00010013176	ARFGAP3 (ENSGALG00010012147)	PACSIN2 (ENSGALG00010012175)	TTLL1 (ENSGALG00010012193)	BIK (ENSGALG00010011907)	MCAT (ENSGALG00010011916)	TSPO (ENSGALG00010011930)	TTLL12 (ENSGALG00010011943)
Turkey	MODERN SPECIES		ABCC9 (ENSMGAG00000013655)	KCNJ8 (ENSMGAG00000013654)	LDHB (ENSMGAG00000013702)	GYS2 (ENSMGAG00000013698)	ENSMGAG00000018603	SPX (ENSMGAG00000013697)	IRAG2 (ENSMGAG00000013692)	DNAI7 (ENSMGAG00000013688)	ETFRF1 (ENSMGAG00000022020)	KRAS (ENSMGAG00000013673)	ENSMGAG00000020387	ENSMGAG00000013685 #15	SSPN (ENSMGAG00000013734) #17	ITPR2 (ENSMGAG00000013722) #20	INTS13 (ENSMGAG00000013714) #21	FGFR1OP2 (ENSMGAG00000013712) #22	TM7SF3 (ENSMGAG00000013710) #24	MED21 (ENSMGAG00000013707) #25	STK38L (ENSMGAG00000013742) #28	BMAL2 (ENSMGAG00000013735) #29	PPFIBP1 (ENSMGAG00000013758) #31	ENSMGAG00000013756	ENSMGAG00000013754	ENSMGAG00000013753	A4GALT (ENSMGAG00000015995)	ENSMGAG00000013745	PACSIN2 (ENSMGAG00000013743)	ENSMGAG00000013804	ENSMGAG00000013805	ENSMGAG00000013806	ENSMGAG00000013808
Japanese quail	MODERN SPECIES		ABCC9 (ENSCJPG00005003226)	KCNJ8 (ENSCJPG00005003236)	LDHB (ENSCJPG00005003238)	GYS2 (ENSCJPG00005003244)	SPX (ENSCJPG00005003246)	ENSCJPG00005003254	DNAI7 (ENSCJPG00005003259)	ETFRF1 (ENSCJPG00005003264)	KRAS (ENSCJPG00005003266)	RASSF8 (ENSCJPG00005003275) #15	BHLHE41 (ENSCJPG00005003277) #16	SSPN (ENSCJPG00005003282) #17	ITPR2 (ENSCJPG00005003455) #20	ENSCJPG00005014196	INTS13 (ENSCJPG00005014197) #21	FGFR1OP2 (ENSCJPG00005014198) #22	TM7SF3 (ENSCJPG00005014199) #24	MED21 (ENSCJPG00005014200) #25	STK38L (ENSCJPG00005014203) #28	BMAL2 (ENSCJPG00005014204) #29	PPFIBP1 (ENSCJPG00005014207) #31	CYB5R3 (ENSCJPG00005015559)	A4GALT (ENSCJPG00005015560)	ENSCJPG00005015561	ENSCJPG00005015562	PACSIN2 (ENSCJPG00005015563)	TTLL1 (ENSCJPG00005015596)	ENSCJPG00005015597	MCAT (ENSCJPG00005015598)	TSPO (ENSCJPG00005015614)	TTLL12 (ENSCJPG00005015615)
Neognathae_b	ANCESTRAL SPECIES	2	ENSGT00940000156680.b.b	ENSGT00990000203615.a.a.b	ENSGT00940000153525	ENSGT00390000018612.a.b	ENSGT00390000012501	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182839.B.a.a #15	ENSGT00940000161014 #16	ENSGT00390000007747 #17	ENSGT00940000156039 #20	ENSGT00390000002793 #21	ENSGT00390000018003.b #22	ENSGT00390000008702 #24	ENSGT00390000014557 #25	ENSGT00940000153544.b #28	ENSGT00940000160423 #29	ENSGT01050000244951.a.a #31	ENSGT00390000005178 #32	ENSGT00940000153962.b	ENSGT00530000063825.A.c	ENSGT00510000047981.c	ENSGT00940000158466	ENSGT00950000182973.a.c.b	ENSGT00940000156720	ENSGT01030000235072	ENSGT00390000013715	ENSGT00390000012980.a
Neognathae_c	ANCESTRAL SPECIES		ENSGT00940000156680.b.b	ENSGT00990000203615.a.a.b	ENSGT00940000153525	ENSGT00390000018612.a.b	ENSGT00390000012501	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182839.B.a.a #15	ENSGT00940000161014 #16	ENSGT00390000007747 #17	ENSGT00940000156039 #20	ENSGT00390000002793 #21	ENSGT00390000018003.b #22	ENSGT00390000008702 #24	ENSGT00390000014557 #25	ENSGT00940000153544.b #28	ENSGT00940000160423 #29	ENSGT01050000244951.a.a #31	ENSGT00390000005178 #32	ENSGT00940000153962.b	ENSGT00530000063825.A.c	ENSGT00510000047981.c	ENSGT00940000158466	ENSGT00950000182973.a.c.b	ENSGT00940000156720	ENSGT01030000235072	ENSGT00390000013715	ENSGT00390000012980.a
Golden eagle	MODERN SPECIES	8	ENSACCG00020007731	ENSACCG00020007791	KCNJ8 (ENSACCG00020007883)	LDHB (ENSACCG00020007895)	GYS2 (ENSACCG00020007913)	SPX (ENSACCG00020007933)	IRAG2 (ENSACCG00020007953)	DNAI7 (ENSACCG00020007983)	ETFRF1 (ENSACCG00020008012)	KRAS (ENSACCG00020008023)	RASSF8 (ENSACCG00020008036) #15	BHLHE41 (ENSACCG00020008046) #16	SSPN (ENSACCG00020008052) #17	ITPR2 (ENSACCG00020014160) #20	INTS13 (ENSACCG00020016853) #21	FGFR1OP2 (ENSACCG00020016860) #22	PRMT8 (ENSACCG00020016863)	CRACR2A (ENSACCG00020016865)	PARP11 (ENSACCG00020016868)	TSPAN9 (ENSACCG00020016871)	TEAD4 (ENSACCG00020016876)	TULP3 (ENSACCG00020016877)	RHNO1 (ENSACCG00020016878)	FOXM1 (ENSACCG00020016881)	ENSACCG00020016883	ITFG2 (ENSACCG00020016885)	FKBP4 (ENSACCG00020016887)	ENSACCG00020016890	ENSACCG00020016892	ENSACCG00020016894	NECAP1 (ENSACCG00020016896)
Kakapo	MODERN SPECIES	20	ABCC9 (ENSSHBG00005015154)	KCNJ8 (ENSSHBG00005014701)	LDHB (ENSSHBG00005014687)	GYS2 (ENSSHBG00005014671)	SPX (ENSSHBG00005014662)	IRAG2 (ENSSHBG00005014648)	DNAI7 (ENSSHBG00005014618)	ETFRF1 (ENSSHBG00005014601)	KRAS (ENSSHBG00005014594)	ENSSHBG00005014584	RASSF8 (ENSSHBG00005014578) #15	BHLHE41 (ENSSHBG00005014564) #16	SSPN (ENSSHBG00005014543) #17	ITPR2 (ENSSHBG00005013963) #20	INTS13 (ENSSHBG00005013819) #21	FGFR1OP2 (ENSSHBG00005013801) #22	TM7SF3 (ENSSHBG00005013789) #24	MED21 (ENSSHBG00005013777) #25	STK38L (ENSSHBG00005013754) #28	BMAL2 (ENSSHBG00005013707) #29	ENSSHBG00005013692	PPFIBP1 (ENSSHBG00005013672) #31	CYB5R3 (ENSSHBG00005013634)	ENSSHBG00005013622	ENSSHBG00005013616	ENSSHBG00005013609	ARFGAP3 (ENSSHBG00005013602)	PACSIN2 (ENSSHBG00005013557)	TTLL1 (ENSSHBG00005013540)	ENSSHBG00005013522	MCAT (ENSSHBG00005013512)
Passeriformes	ANCESTRAL SPECIES	3	ENSGT00940000159401	ENSGT00960000189377	ENSGT00940000155319.h.c.b	ENSGT00960000188407	ENSGT00940000161161.b	ENSGT00940000158466	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00950000182839.B.a.a #15	ENSGT00940000161014 #16	ENSGT00390000007747 #17	ENSGT00960000189646	ENSGT00940000156039 #20	ENSGT00390000002793 #21	ENSGT00390000018003.b #22	ENSGT00390000008702 #24	ENSGT00390000014557 #25	ENSGT00940000153544.b #28	ENSGT00940000160423 #29	ENSGT01050000244951.a.a #31	ENSGT00390000005178 #32	ENSGT00940000153962.b	ENSGT00530000063825.A.c	ENSGT00510000047981.c	ENSGT00530000063722.a	ENSGT00390000012501	ENSGT00390000018612.a.b	ENSGT00940000153525	ENSGT00990000203615.a.a.b	ENSGT00940000156680.b.b
Great tit	MODERN SPECIES	10	ENSPMJG00000009240	ENSPMJG00000009239	ENSPMJG00000009238	ARFGAP3 (ENSPMJG00000009234)	ENSPMJG00000009233	DNAI7 (ENSPMJG00000009232)	ETFRF1 (ENSPMJG00000009230)	KRAS (ENSPMJG00000009229)	RASSF8 (ENSPMJG00000009195) #15	BHLHE41 (ENSPMJG00000009191) #16	SSPN (ENSPMJG00000009189) #17	ENSPMJG00000009186	ENSPMJG00000009182	ITPR2 (ENSPMJG00000009161) #20	INTS13 (ENSPMJG00000009129) #21	FGFR1OP2 (ENSPMJG00000009128) #22	TM7SF3 (ENSPMJG00000009126) #24	MED21 (ENSPMJG00000009125) #25	STK38L (ENSPMJG00000009106) #28	BMAL2 (ENSPMJG00000009089) #29	REP15 (ENSPMJG00000009088) #32	PPFIBP1 (ENSPMJG00000009077) #31	CYB5R3 (ENSPMJG00000009034)	ENSPMJG00000009033	ENSPMJG00000009032	AGK (ENSPMJG00000009029)	DENND11 (ENSPMJG00000009027)	WEE2 (ENSPMJG00000009025)	SSBP1 (ENSPMJG00000009024)	CREB3L2 (ENSPMJG00000009020)	DGKI (ENSPMJG00000009012)
Passeriformes_d	ANCESTRAL SPECIES	3	ENSGT00960000189377.a	ENSGT00960000189377.b	ENSGT00940000155319.h.c.b	ENSGT00960000188407	ENSGT00940000161161.b	ENSGT00940000158466	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00950000182839.B.a.a #15	ENSGT00940000161014 #16	ENSGT00390000007747 #17	ENSGT00960000189646	ENSGT00940000156039 #20	ENSGT00390000002793 #21	ENSGT00390000018003.b #22	ENSGT00390000008702 #24	ENSGT00390000014557 #25	ENSGT00940000153544.b #28	ENSGT00940000160423 #29	ENSGT01050000244951.a.a #31	ENSGT00390000005178 #32	ENSGT00940000153962.b	ENSGT00530000063825.A.c	ENSGT00510000047981.c	ENSGT00530000063722.a	ENSGT00390000012501	ENSGT00390000018612.a.b	ENSGT00940000153525	ENSGT00990000203615.a.a.b	ENSGT00940000156680.b.b
Passeriformes_g	ANCESTRAL SPECIES	4	ENSGT00960000189377.a	ENSGT00960000189377.b	ENSGT00940000155319.h.c.b	ENSGT00960000188407	ENSGT00940000161161.b	ENSGT00940000158466	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00950000182839.B.a.a #15	ENSGT00940000161014 #16	ENSGT00390000007747 #17	ENSGT00960000189646	ENSGT00940000156039 #20	ENSGT00390000002793 #21	ENSGT00390000018003.b #22	ENSGT00390000008702 #24	ENSGT00390000014557 #25	ENSGT00940000153544.b #28	ENSGT00940000160423 #29	ENSGT01050000244951.a.a #31	ENSGT00390000005178 #32	ENSGT00940000153962.b	ENSGT00530000063825.A.c	ENSGT00510000047981.c	ENSGT00530000063722.a	ENSGT00390000012501	ENSGT00390000018612.a.b	ENSGT00940000153525	ENSGT00990000203615.a.a.b	ENSGT00940000156680.b.b
Passeroidea	ANCESTRAL SPECIES	3	ENSGT00940000159401	ENSGT00960000189377.a	ENSGT00960000189377.b	ENSGT00940000155319.h.c.b	ENSGT00940000161161.b	ENSGT00940000158466	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00950000182839.B.a.a #15	ENSGT00940000161014 #16	ENSGT00390000007747 #17	ENSGT00960000189646	ENSGT00940000156039 #20	ENSGT00390000002793 #21	ENSGT00390000018003.b #22	ENSGT00390000008702 #24	ENSGT00390000014557 #25	ENSGT00940000153544.b #28	ENSGT00940000160423 #29	ENSGT01050000244951.a.a #31	ENSGT00390000005178 #32	ENSGT00940000153962.b	ENSGT00530000063825.A.c	ENSGT00510000047981.c	ENSGT00530000063722.a	ENSGT00390000012501	ENSGT00390000018612.a.b	ENSGT00940000153525	ENSGT00990000203615.a.a.b	ENSGT00940000156680.b.b
Zebra finch	MODERN SPECIES	11	ENSTGUG00000012248	ENSTGUG00000021234	ENSTGUG00000025430	ENSTGUG00000023292	ARFGAP3 (ENSTGUG00000012247)	DNAI7 (ENSTGUG00000012243)	KRAS (ENSTGUG00000012235)	ENSTGUG00000027429	RASSF8 (ENSTGUG00000012234) #15	BHLHE41 (ENSTGUG00000012230) #16	SSPN (ENSTGUG00000025597) #17	ENSTGUG00000023761	ITPR2 (ENSTGUG00000012196) #20	ENSTGUG00000012195	INTS13 (ENSTGUG00000012188) #21	FGFR1OP2 (ENSTGUG00000012184) #22	TM7SF3 (ENSTGUG00000012183) #24	MED21 (ENSTGUG00000024373) #25	STK38L (ENSTGUG00000012169) #28	BMAL2 (ENSTGUG00000012163) #29	REP15 (ENSTGUG00000012162) #32	ENSTGUG00000021374	PPFIBP1 (ENSTGUG00000012151) #31	CYB5R3 (ENSTGUG00000012143)	ENSTGUG00000012140	ENSTGUG00000020648	ENSTGUG00000026261	IRAG2 (ENSTGUG00000012124)	SPX (ENSTGUG00000012121)	GYS2 (ENSTGUG00000012106)	LDHB (ENSTGUG00000025396)
Common canary	MODERN SPECIES	26	C12orf4 (ENSSCAG00000009518)	RAD51AP1 (ENSSCAG00000009505)	ENSSCAG00000009496	ENSSCAG00000009486	ENSSCAG00000009484	ENSSCAG00000009483	ARFGAP3 (ENSSCAG00000009470)	ENSSCAG00000009466	ETFRF1 (ENSSCAG00000009461)	KRAS (ENSSCAG00000009455)	RASSF8 (ENSSCAG00000009415) #15	SSPN (ENSSCAG00000009410) #17	ENSSCAG00000009405	ITPR2 (ENSSCAG00000009371) #20	INTS13 (ENSSCAG00000009349) #21	FGFR1OP2 (ENSSCAG00000009342) #22	TM7SF3 (ENSSCAG00000009337) #24	MED21 (ENSSCAG00000009334) #25	STK38L (ENSSCAG00000009318) #28	BMAL2 (ENSSCAG00000009281) #29	PPFIBP1 (ENSSCAG00000009235) #31	REP15 (ENSSCAG00000009208) #32	CYB5R3 (ENSSCAG00000009199)	ENSSCAG00000009188	A4GALT (ENSSCAG00000009175)	IRAG2 (ENSSCAG00000009163)	SPX (ENSSCAG00000009153)	GYS2 (ENSSCAG00000008867)	LDHB (ENSSCAG00000008831)	KCNJ8 (ENSSCAG00000008826)	ABCC9 (ENSSCAG00000008765)
Medium ground finch	MODERN SPECIES	117	DYRK4 (ENSGFOG00000003048)	ENSGFOG00000003173	ENSGFOG00000003186	ENSGFOG00000003210	ENSGFOG00000003224	ARFGAP3 (ENSGFOG00000003249)	ENSGFOG00000003283	ETFRF1 (ENSGFOG00000003308)	KRAS (ENSGFOG00000003324)	ENSGFOG00000003342	RASSF8 (ENSGFOG00000003381) #15	SSPN (ENSGFOG00000003396) #17	ITPR2 (ENSGFOG00000004602) #20	ENSGFOG00000014762	INTS13 (ENSGFOG00000014765) #21	FGFR1OP2 (ENSGFOG00000014771) #22	TM7SF3 (ENSGFOG00000014772) #24	MED21 (ENSGFOG00000014773) #25	STK38L (ENSGFOG00000014774) #28	BMAL2 (ENSGFOG00000014776) #29
Flycatcher	MODERN SPECIES	10	ENSFALG00000027592	CCND2 (ENSFALG00000025684)	ENSFALG00000027101	ENSFALG00000026061	ENSFALG00000023011	ARFGAP3 (ENSFALG00000023723)	DNAI7 (ENSFALG00000025986)	ETFRF1 (ENSFALG00000003861)	KRAS (ENSFALG00000003867)	RASSF8 (ENSFALG00000003874) #15	ENSFALG00000028108 #16	SSPN (ENSFALG00000026325) #17	ENSFALG00000026688	ITPR2 (ENSFALG00000003887) #20	INTS13 (ENSFALG00000003909) #21	FGFR1OP2 (ENSFALG00000028430) #22	TM7SF3 (ENSFALG00000003926) #24	MED21 (ENSFALG00000003930) #25	STK38L (ENSFALG00000003933) #28	BMAL2 (ENSFALG00000003942) #29	ENSFALG00000015072 #32	ENSFALG00000003955 #31	ENSFALG00000023994	ENSFALG00000003959	ENSFALG00000025784	ENSFALG00000003966	ENSFALG00000015090	ENSFALG00000025294	SPX (ENSFALG00000003552)	GYS2 (ENSFALG00000003557)	LDHB (ENSFALG00000024585)
African ostrich	MODERN SPECIES	759								NOL9 (ENSSCUG00000011327)	ZBTB48 (ENSSCUG00000011324)	KLHL21 (ENSSCUG00000011323)	PHF13 (ENSSCUG00000011321)	DNAJC11 (ENSSCUG00000011318)	ENSSCUG00000011316	ENSSCUG00000011313	INTS13 (ENSSCUG00000011306) #21	FGFR1OP2 (ENSSCUG00000011301) #22	TM7SF3 (ENSSCUG00000011298) #24	MED21 (ENSSCUG00000011297) #25	STK38L (ENSSCUG00000011291) #28	BMAL2 (ENSSCUG00000011279) #29	PPFIBP1 (ENSSCUG00000011251) #31	ENSSCUG00000011215	CYB5R3 (ENSSCUG00000011214)	ENSSCUG00000011212	A4GALT (ENSSCUG00000011210)	ARFGAP3 (ENSSCUG00000011207)	PACSIN2 (ENSSCUG00000011205)	TTLL1 (ENSSCUG00000011203)	ENSSCUG00000011201	MCAT (ENSSCUG00000011199)	TSPO (ENSSCUG00000011198)
Australian saltwater crocodile	MODERN SPECIES	49	ABCC9 (ENSCPRG00005011566)	KCNJ8 (ENSCPRG00005011543)	ENSCPRG00005011538	LDHB (ENSCPRG00005011537)	GYS2 (ENSCPRG00005011527)	SPX (ENSCPRG00005011505)	IRAG2 (ENSCPRG00005011495)	ETFRF1 (ENSCPRG00005011491)	DNAI7 (ENSCPRG00005011487)	KRAS (ENSCPRG00005011484)	ENSCPRG00005011471	RASSF8 (ENSCPRG00005011432) #15	SSPN (ENSCPRG00005011416) #17	ITPR2 (ENSCPRG00005005714) #20	INTS13 (ENSCPRG00005004880) #21	FGFR1OP2 (ENSCPRG00005004865) #22	TM7SF3 (ENSCPRG00005004854) #24	MED21 (ENSCPRG00005004841) #25	STK38L (ENSCPRG00005004814) #28	PPFIBP1 (ENSCPRG00005003349) #31	CYB5R3 (ENSCPRG00005003173)	A4GALT (ENSCPRG00005003168)	ARFGAP3 (ENSCPRG00005003154)	PACSIN2 (ENSCPRG00005003149)	TTLL1 (ENSCPRG00005003144)	ENSCPRG00005003115	MCAT (ENSCPRG00005003081)	TSPO (ENSCPRG00005003074)	TTLL12 (ENSCPRG00005003056)	ENSCPRG00005003040	SCUBE1 (ENSCPRG00005003018)
Cryptodira	ANCESTRAL SPECIES	10	ENSGT00990000203615.a.a.b	ENSGT00940000153525	ENSGT00540000073481	ENSGT00390000018612.a.b	ENSGT00390000012501	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182839.B.a.a #15	ENSGT00940000161014 #16	ENSGT00390000007747 #17	ENSGT00940000156039 #20	ENSGT00390000002793 #21	ENSGT00390000018003.b #22	ENSGT00390000008702 #24	ENSGT00390000014557 #25	ENSGT00940000162660.a	ENSGT00940000153544.b #28	ENSGT00940000160423 #29	ENSGT01050000244951.a.a #31	ENSGT00390000005178 #32	ENSGT00940000153962.b	ENSGT00530000063825.A.c	ENSGT00510000047981.c	ENSGT00940000158466	ENSGT00950000182973.a.c.b	ENSGT00940000156720	ENSGT01030000235072	ENSGT00390000013715
Testudinoidea	ANCESTRAL SPECIES	4	ENSGT00940000156680.b.b	ENSGT00990000203615.a.a.b	ENSGT00940000153525	ENSGT00540000073481	ENSGT00390000018612.a.b	ENSGT00390000012501	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00950000182839.B.a.a #15	ENSGT00940000161014 #16	ENSGT00390000007747 #17	ENSGT00940000156039 #20	ENSGT00390000002793 #21	ENSGT00390000018003.b #22	ENSGT00390000008702 #24	ENSGT00390000014557 #25	ENSGT00940000162660.a	ENSGT00940000153544.b #28	ENSGT00940000160423 #29	ENSGT01050000244951.a.a #31	ENSGT00390000005178 #32	ENSGT00940000153962.b	ENSGT00530000063825.A.c	ENSGT00510000047981.c	ENSGT00940000158466	ENSGT00950000182973.a.c.b	ENSGT00940000156720	ENSGT01030000235072	ENSGT00390000013715
Testudinidae	ANCESTRAL SPECIES	14	ENSGT00940000156680.b.b	ENSGT00990000203615.a.a.b	ENSGT00940000153525	ENSGT00540000073481	ENSGT00390000018612.a.b	ENSGT00390000012501	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00950000182839.B.a.a #15	ENSGT00940000161014 #16	ENSGT00390000007747 #17	ENSGT00940000156039 #20	ENSGT00390000002793 #21	ENSGT00390000018003.b #22	ENSGT00390000008702 #24	ENSGT00390000014557 #25	ENSGT00940000162660.a	ENSGT00940000153544.b #28	ENSGT00940000160423 #29	ENSGT01050000244951.a.a #31	ENSGT00390000005178 #32	ENSGT00940000153962.b	ENSGT00530000063825.A.c	ENSGT00510000047981.c	ENSGT00940000158466	ENSGT00950000182973.a.c.b	ENSGT00940000156720	ENSGT01030000235072.b	ENSGT00390000013715
Abingdon island giant tortoise	MODERN SPECIES	2598											RASSF8 (ENSCABG00000019586) #15	BHLHE41 (ENSCABG00000019588) #16	SSPN (ENSCABG00000019593) #17	ITPR2 (ENSCABG00000019607) #20	INTS13 (ENSCABG00000019626) #21	FGFR1OP2 (ENSCABG00000019632) #22	TM7SF3 (ENSCABG00000019640) #24	MED21 (ENSCABG00000019646) #25	ENSCABG00000019648	ENSCABG00000019650	STK38L (ENSCABG00000019651) #28
Goode s thornscrub tortoise	MODERN SPECIES		ABCC9 (ENSGEVG00005003614)	KCNJ8 (ENSGEVG00005003588)	LDHB (ENSGEVG00005003582)	ENSGEVG00005003576	GYS2 (ENSGEVG00005003564)	SPX (ENSGEVG00005003557)	IRAG2 (ENSGEVG00005003531)	DNAI7 (ENSGEVG00005003509)	ETFRF1 (ENSGEVG00005003501)	KRAS (ENSGEVG00005003488)	RASSF8 (ENSGEVG00005003481) #15	BHLHE41 (ENSGEVG00005003472) #16	SSPN (ENSGEVG00005003444) #17	ITPR2 (ENSGEVG00005002806) #20	INTS13 (ENSGEVG00005002456) #21	FGFR1OP2 (ENSGEVG00005002446) #22	TM7SF3 (ENSGEVG00005002419) #24	MED21 (ENSGEVG00005002409) #25	ENSGEVG00005002399	STK38L (ENSGEVG00005002381) #28	BMAL2 (ENSGEVG00005002351) #29	PPFIBP1 (ENSGEVG00005002317) #31	REP15 (ENSGEVG00005002300) #32	CYB5R3 (ENSGEVG00005002279)	ENSGEVG00005002257	A4GALT (ENSGEVG00005002241)	ARFGAP3 (ENSGEVG00005002157)	PACSIN2 (ENSGEVG00005002129)	TTLL1 (ENSGEVG00005002106)	ENSGEVG00005002092	MCAT (ENSGEVG00005002033)
Emydidae	ANCESTRAL SPECIES	5	ENSGT00940000156680.b.b	ENSGT00990000203615.a.a.b	ENSGT00940000153525	ENSGT00540000073481	ENSGT00390000018612.a.b	ENSGT00390000012501	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00950000182839.B.a.a #15	ENSGT00940000161014 #16	ENSGT00390000007747 #17	ENSGT00940000156039 #20	ENSGT00390000002793 #21	ENSGT00390000018003.b #22	ENSGT00390000008702 #24	ENSGT00390000014557 #25	ENSGT00940000162660.a	ENSGT00940000153544.b #28	ENSGT00940000160423 #29	ENSGT01050000244951.a.a #31	ENSGT00390000005178 #32	ENSGT00940000153962.b	ENSGT00530000063825.A.c	ENSGT00510000047981.c	ENSGT00940000158466	ENSGT00950000182973.a.c.b	ENSGT00940000156720	ENSGT01030000235072	ENSGT00390000013715
painted turtle	MODERN SPECIES	15	ENSCPBG00000009269	GYS2 (ENSCPBG00000009271)	SPX (ENSCPBG00000009274)	IRAG2 (ENSCPBG00000009279)	DNAI7 (ENSCPBG00000009284)	ETFRF1 (ENSCPBG00000009287)	KRAS (ENSCPBG00000009289)	ENSCPBG00000009291	ENSCPBG00000009295	RASSF8 (ENSCPBG00000009305) #15	BHLHE41 (ENSCPBG00000009309) #16	SSPN (ENSCPBG00000009310) #17	ITPR2 (ENSCPBG00000009996) #20	ENSCPBG00000023088	INTS13 (ENSCPBG00000023095) #21	FGFR1OP2 (ENSCPBG00000023106) #22	TM7SF3 (ENSCPBG00000023111) #24	MED21 (ENSCPBG00000023117) #25	STK38L (ENSCPBG00000023125) #28	BMAL2 (ENSCPBG00000023135) #29	PPFIBP1 (ENSCPBG00000023210) #31	REP15 (ENSCPBG00000025166) #32	CYB5R3 (ENSCPBG00000025168)	ENSCPBG00000025169	A4GALT (ENSCPBG00000025172)	ENSCPBG00000025174	ARFGAP3 (ENSCPBG00000025177)	PACSIN2 (ENSCPBG00000025185)	ENSCPBG00000025187	ENSCPBG00000025195	ENSCPBG00000025197
Three-toed box turtle	MODERN SPECIES	49	KCNJ8 (ENSTMTG00000014419)	LDHB (ENSTMTG00000014427)	ENSTMTG00000014437	GYS2 (ENSTMTG00000014457)	SPX (ENSTMTG00000014479)	IRAG2 (ENSTMTG00000014503)	DNAI7 (ENSTMTG00000014548)	ETFRF1 (ENSTMTG00000014627)	KRAS (ENSTMTG00000014635)	RASSF8 (ENSTMTG00000014655) #15	ENSTMTG00000014670 #16	SSPN (ENSTMTG00000014686) #17	ITPR2 (ENSTMTG00000015648) #20	INTS13 (ENSTMTG00000022606) #21	ENSTMTG00000022613	FGFR1OP2 (ENSTMTG00000022615) #22	TM7SF3 (ENSTMTG00000022618) #24	MED21 (ENSTMTG00000022622) #25	ENSTMTG00000022623	STK38L (ENSTMTG00000022628) #28	BMAL2 (ENSTMTG00000022632) #29	PPFIBP1 (ENSTMTG00000022636) #31	REP15 (ENSTMTG00000022647) #32	CYB5R3 (ENSTMTG00000022651)	A4GALT (ENSTMTG00000022655)	ARFGAP3 (ENSTMTG00000022658)	PACSIN2 (ENSTMTG00000022661)	TTLL1 (ENSTMTG00000022665)	ENSTMTG00000022668	MCAT (ENSTMTG00000022671)	TSPO (ENSTMTG00000022673)
Chinese turtle	MODERN SPECIES	1391	GYS2 (ENSPSIG00000009942)	SPX (ENSPSIG00000014186)	ENSPSIG00000014270	DNAI7 (ENSPSIG00000014365)	ETFRF1 (ENSPSIG00000015062)	KRAS (ENSPSIG00000015077)	ENSPSIG00000016355	RASSF8 (ENSPSIG00000016483) #15	BHLHE41 (ENSPSIG00000016504) #16	SSPN (ENSPSIG00000016959) #17	ENSPSIG00000017390	ENSPSIG00000017522 #20	ENSPSIG00000017639 #20	ENSPSIG00000017808	INTS13 (ENSPSIG00000017830) #21	FGFR1OP2 (ENSPSIG00000006855) #22	TM7SF3 (ENSPSIG00000007228) #24	MED21 (ENSPSIG00000008148) #25	ENSPSIG00000008183	STK38L (ENSPSIG00000008466) #28	BMAL2 (ENSPSIG00000009416) #29	PPFIBP1 (ENSPSIG00000010149) #31	REP15 (ENSPSIG00000001321) #32	CYB5R3 (ENSPSIG00000010316)	ENSPSIG00000001327	ENSPSIG00000010457	ENSPSIG00000011949	A4GALT (ENSPSIG00000001335)	ARFGAP3 (ENSPSIG00000011954)	PACSIN2 (ENSPSIG00000012828)	ENSPSIG00000013125
Lepidosauria	ANCESTRAL SPECIES	67	ENSGT00530000063808.b	ENSGT00390000014429.b	ENSGT00940000156776	ENSGT00390000003057	ENSGT00940000154045.a	ENSGT00390000003721.d.b	ENSGT00950000183125.a	ENSGT00530000064318	ENSGT00910000144343	ENSGT00950000182839.B.a.a #15	ENSGT00940000161014 #16	ENSGT00390000007747 #17	ENSGT00940000156039 #20	ENSGT00940000167397.b	ENSGT00390000002793 #21	ENSGT00390000018003.b #22	ENSGT00390000008702 #24	ENSGT00390000014557 #25	ENSGT00940000162660.a	ENSGT00940000153544.b #28	ENSGT00940000160423 #29	ENSGT00940000169031	ENSGT01050000244951.a.a #31	ENSGT00390000005178 #32	ENSGT00940000153962.b	ENSGT00530000063825.A.c
Episquamata	ANCESTRAL SPECIES	3	ENSGT00390000007134	ENSGT00530000063808.b	ENSGT00390000014429.b	ENSGT00940000156776	ENSGT00390000003057	ENSGT00940000154045.a	ENSGT00390000003721.d.b	ENSGT00950000183125.a	ENSGT00530000064318	ENSGT00910000144343	ENSGT00950000182839.B.a.a #15	ENSGT00940000161014 #16	ENSGT00390000007747 #17	ENSGT00940000156039 #20	ENSGT00390000002793 #21	ENSGT00390000018003.b #22	ENSGT00390000008702 #24	ENSGT00390000014557 #25	ENSGT00940000162660.a	ENSGT00940000153544.b #28	ENSGT00940000160423 #29	ENSGT00940000169031	ENSGT01050000244951.a.a #31	ENSGT00390000005178 #32	ENSGT00940000153962.b	ENSGT00940000155209	ENSGT00940000156019	ENSGT00940000163878	ENSGT00940000159379	ENSGT00940000153372.A.f	ENSGT00940000161422
Toxicofera	ANCESTRAL SPECIES	7	ENSGT00530000063808.b	ENSGT00390000014429.b	ENSGT00940000156776	ENSGT00390000003057	ENSGT00940000154045.a	ENSGT00390000003721.d.b	ENSGT00950000183125.a	ENSGT00530000064318	ENSGT00910000144343	ENSGT00950000182839.B.a.a #15	ENSGT00940000153118.eb.o.a	ENSGT00940000161014 #16	ENSGT00390000007747 #17	ENSGT00940000156039 #20	ENSGT00390000002793 #21	ENSGT00390000018003.b #22	ENSGT00390000008702 #24	ENSGT00390000014557 #25	ENSGT00940000162660.a	ENSGT00940000153544.b #28	ENSGT00940000160423 #29	ENSGT00940000169031	ENSGT01050000244951.a.a #31	ENSGT00390000005178 #32	ENSGT00940000153962.b	ENSGT00940000155209	ENSGT00940000156019	ENSGT00940000159379	ENSGT00940000153372.A.f	ENSGT00940000161422	ENSGT00940000153567.b.a.b
Elapidae	ANCESTRAL SPECIES	6	ENSGT00390000001775.B	ENSGT00390000007134	ENSGT00530000063808.b	ENSGT00390000014429.b	ENSGT00940000156776	ENSGT00390000003057	ENSGT00940000154045.a	ENSGT00390000003721.d.b	ENSGT00950000183125.a	ENSGT00530000064318.g	ENSGT00950000182839.B.a.a #15	ENSGT00940000161014 #16	ENSGT00390000007747 #17	ENSGT00940000156039 #20	ENSGT00390000002793 #21	ENSGT00390000018003.b #22	ENSGT00390000008702 #24	ENSGT00390000014557 #25	ENSGT00940000162660.a	ENSGT00940000153544.b #28	ENSGT00940000160423 #29	ENSGT00940000169031	ENSGT01050000244951.a.a #31	ENSGT00940000153962.b	ENSGT00940000155209.w	ENSGT00940000156019.g	ENSGT00940000159379	ENSGT00940000153372.A.f.o.b	ENSGT00940000153372.A.f.o.a	ENSGT00940000161422	ENSGT00940000153567.b.a.b
Elapidae_a	ANCESTRAL SPECIES	1	ENSGT00810000125439.B	ENSGT00390000013052	ENSGT00530000063868.b	ENSGT00940000158792	ENSGT00940000156776	ENSGT00390000003057	ENSGT00940000154045.a	ENSGT00390000003721.d.b	ENSGT00950000183125.a	ENSGT00530000064318.g	ENSGT00950000182839.B.a.a #15	ENSGT00940000161014 #16	ENSGT00390000007747.i #17	ENSGT00940000156039 #20	ENSGT00390000002793 #21	ENSGT00390000018003.b #22	ENSGT00390000008702 #24	ENSGT00390000014557 #25	ENSGT00940000162660.a	ENSGT00940000153544.b #28	ENSGT00940000160423 #29	ENSGT01050000244951.a.a #31	ENSGT00940000153962.b	ENSGT00940000155209.w	ENSGT00940000156019.g	ENSGT00940000159379	ENSGT00940000153372.A.f.o.b	ENSGT00940000153372.A.f.o.a	ENSGT00940000161422	ENSGT00940000153567.b.a.b	ENSGT00940000155057
Acanthophiinae	ANCESTRAL SPECIES		ENSGT00390000013052	ENSGT00530000063868.b	ENSGT00940000158792	ENSGT00940000156776	ENSGT00390000003057	ENSGT00940000154045.a	ENSGT00390000003721.d.b	ENSGT00950000183125.a	ENSGT00530000064318.g	ENSGT00940000153118.eb.o.a	ENSGT00950000182839.B.a.a #15	ENSGT00940000161014 #16	ENSGT00390000007747.i #17	ENSGT00940000156039 #20	ENSGT00390000002793 #21	ENSGT00390000018003.b #22	ENSGT00390000008702 #24	ENSGT00390000014557 #25	ENSGT00940000162660.a	ENSGT00940000153544.b #28	ENSGT00940000160423 #29	ENSGT01050000244951.a.a #31	ENSGT00940000153962.b	ENSGT00940000155209.w	ENSGT00940000156019.g	ENSGT00940000159379	ENSGT00940000153372.A.f.o.b	ENSGT00940000153372.A.f.o.a	ENSGT00940000161422	ENSGT00940000153567.b.a.b	ENSGT00940000155057
Mainland tiger snake	MODERN SPECIES	20	IRAK4 (ENSNSUG00000006981)	CAMK1D (ENSNSUG00000006982)	CDC123 (ENSNSUG00000006986)	NUDT5 (ENSNSUG00000007005)	ENSNSUG00000007006	SEC61A2 (ENSNSUG00000007009)	DHTKD1 (ENSNSUG00000007533)	ENSNSUG00000008081	ENSNSUG00000008082	ENSNSUG00000008083	RASSF8 (ENSNSUG00000008084) #15	ENSNSUG00000008085	ENSNSUG00000008086 #17	ITPR2 (ENSNSUG00000008088) #20	INTS13 (ENSNSUG00000012613) #21	FGFR1OP2 (ENSNSUG00000012678) #22	TM7SF3 (ENSNSUG00000012679) #24	MED21 (ENSNSUG00000012804) #25	ENSNSUG00000012805	STK38L (ENSNSUG00000012807) #28	BMAL2 (ENSNSUG00000013032) #29	CYB5R3 (ENSNSUG00000013035)	CACNA2D1 (ENSNSUG00000013074)	ENSNSUG00000013076
Eastern brown snake	MODERN SPECIES		NELL2 (ENSPTXG00000001276)	TMEM117 (ENSPTXG00000001295)	TWF1 (ENSPTXG00000001296)	IRAK4 (ENSPTXG00000001301)	CDC123 (ENSPTXG00000001304)	NUDT5 (ENSPTXG00000001307)	SEC61A2 (ENSPTXG00000001313)	DHTKD1 (ENSPTXG00000001318)	UPF2 (ENSPTXG00000001320)	ENSPTXG00000001330	RASSF8 (ENSPTXG00000001331) #15	BHLHE41 (ENSPTXG00000001334) #16	SSPN (ENSPTXG00000001336) #17	ITPR2 (ENSPTXG00000001483) #20	INTS13 (ENSPTXG00000003311) #21	FGFR1OP2 (ENSPTXG00000003315) #22	TM7SF3 (ENSPTXG00000003320) #24	MED21 (ENSPTXG00000003352) #25	ENSPTXG00000003354	STK38L (ENSPTXG00000003358) #28	BMAL2 (ENSPTXG00000003362) #29	PPFIBP1 (ENSPTXG00000003384) #31	CYB5R3 (ENSPTXG00000005034)	CACNA2D1 (ENSPTXG00000005051)	HGF (ENSPTXG00000007546)	SEMA3C (ENSPTXG00000007552)	ENSPTXG00000007556	ENSPTXG00000007567	ENSPTXG00000007568	GNAT3 (ENSPTXG00000007569)	GNAI1 (ENSPTXG00000007570)
Blue-lipped sea krait	MODERN SPECIES	107														ENSLLTG00000000182	INTS13 (ENSLLTG00000000212) #21	FGFR1OP2 (ENSLLTG00000000347) #22	TM7SF3 (ENSLLTG00000000365) #24
Indian cobra	MODERN SPECIES	10	OPTN (ENSNNAG00000012838)	CCDC3 (ENSNNAG00000012861)	CAMK1D (ENSNNAG00000012877)	CDC123 (ENSNNAG00000012909)	NUDT5 (ENSNNAG00000012942)	ENSNNAG00000012965	ENSNNAG00000012980	DHTKD1 (ENSNNAG00000013083)	UPF2 (ENSNNAG00000013165)	ENSNNAG00000013323 #15	ENSNNAG00000013330 #15	BHLHE41 (ENSNNAG00000013363) #16	SSPN (ENSNNAG00000013414) #17	ITPR2 (ENSNNAG00000013481) #20	INTS13 (ENSNNAG00000014593) #21	FGFR1OP2 (ENSNNAG00000014662) #22	TM7SF3 (ENSNNAG00000014680) #24	MED21 (ENSNNAG00000014770) #25	ENSNNAG00000014780	STK38L (ENSNNAG00000014806) #28	BMAL2 (ENSNNAG00000014829) #29	ENSNNAG00000014891	PPFIBP1 (ENSNNAG00000014912) #31	CYB5R3 (ENSNNAG00000015118)	CACNA2D1 (ENSNNAG00000015141)	HGF (ENSNNAG00000015231)	SEMA3C (ENSNNAG00000015432)	ENSNNAG00000015483	ENSNNAG00000015687	GNAT3 (ENSNNAG00000015712)	GNAI1 (ENSNNAG00000015735)
Lizard	MODERN SPECIES	4	GRM3 (ENSACAG00000016442)	ELAPOR2 (ENSACAG00000016478)	OPTN (ENSACAG00000001364)	MCM10 (ENSACAG00000001208)	UCMA (ENSACAG00000001195)	PHYH (ENSACAG00000001099)	SEPHS1 (ENSACAG00000000959)	BEND7 (ENSACAG00000000900)	PRPF18 (ENSACAG00000000818)	ENSACAG00000036814	FRMD4A (ENSACAG00000000600)	ENSACAG00000044270	ENSACAG00000011674 #17	ITPR2 (ENSACAG00000011690) #20	INTS13 (ENSACAG00000012201) #21	FGFR1OP2 (ENSACAG00000012244) #22	TM7SF3 (ENSACAG00000012262) #24	MED21 (ENSACAG00000012314) #25	ENSACAG00000036873	ENSACAG00000036638	ENSACAG00000012318	ENSACAG00000012323	ENSACAG00000042067	STK38L (ENSACAG00000012343) #28	BMAL2 (ENSACAG00000012446) #29	PPFIBP1 (ENSACAG00000012507) #31	REP15 (ENSACAG00000012559) #32	CYB5R3 (ENSACAG00000038147)	ENSACAG00000039959	CACNA2D1 (ENSACAG00000012663)	HGF (ENSACAG00000013177)
Laterata	ANCESTRAL SPECIES	6	ENSGT00390000011492	ENSGT00390000007134	ENSGT00530000063808.b	ENSGT00390000014429.b	ENSGT00940000156776	ENSGT00390000003057	ENSGT00940000154045.a	ENSGT00390000003721.d.b	ENSGT00950000183125.a	ENSGT00530000064318	ENSGT00950000182839.B.a.a #15	ENSGT00940000161014 #16	ENSGT00390000007747 #17	ENSGT00940000156039 #20	ENSGT00390000002793 #21	ENSGT00390000018003.b #22	ENSGT00390000008702 #24	ENSGT00390000014557 #25	ENSGT00940000153544.b #28	ENSGT00940000160423 #29	ENSGT01050000244951.a.a.t.b #31	ENSGT00390000005178 #32	ENSGT00940000153962.b	ENSGT00940000155209	ENSGT00940000156019	ENSGT00940000163878	ENSGT00940000159379	ENSGT00940000153372.A.f	ENSGT00940000161422	ENSGT00940000153567.b.a.b	ENSGT00940000155057
Argentine black and white tegu	MODERN SPECIES	33	MCM10 (ENSSMRG00000011915)	OPTN (ENSSMRG00000011916)	CCDC3 (ENSSMRG00000011920)	CAMK1D (ENSSMRG00000011958)	CDC123 (ENSSMRG00000011960)	NUDT5 (ENSSMRG00000011972)	SEC61A2 (ENSSMRG00000011978)	DHTKD1 (ENSSMRG00000012052)	UPF2 (ENSSMRG00000012056)	RASSF8 (ENSSMRG00000012140) #15	ENSSMRG00000012141	BHLHE41 (ENSSMRG00000012142) #16	SSPN (ENSSMRG00000012143) #17	ITPR2 (ENSSMRG00000012153) #20	INTS13 (ENSSMRG00000012157) #21	FGFR1OP2 (ENSSMRG00000012161) #22	TM7SF3 (ENSSMRG00000012162) #24	MED21 (ENSSMRG00000012165) #25	STK38L (ENSSMRG00000012167) #28	BMAL2 (ENSSMRG00000012171) #29	PPFIBP1 (ENSSMRG00000012209) #31	REP15 (ENSSMRG00000012218) #32	CYB5R3 (ENSSMRG00000012219)	ENSSMRG00000012220	CACNA2D1 (ENSSMRG00000012289)	HGF (ENSSMRG00000012323)	SEMA3C (ENSSMRG00000012361)	CD36 (ENSSMRG00000012365)	GNAT3 (ENSSMRG00000012367)	GNAI1 (ENSSMRG00000012371)	MAGI2 (ENSSMRG00000012386)
Common wall lizard	MODERN SPECIES	1	PHYH (ENSPMRG00000011461)	SEPHS1 (ENSPMRG00000011470)	BEND7 (ENSPMRG00000011477)	ENSPMRG00000011482	PRPF18 (ENSPMRG00000011486)	FRMD4A (ENSPMRG00000011508)	CDNF (ENSPMRG00000011566)	HSPA14 (ENSPMRG00000011576)	DCLRE1C (ENSPMRG00000011604)	MEIG1 (ENSPMRG00000011618)	ENSPMRG00000011625	DMTF1 (ENSPMRG00000011634)	ELAPOR2 (ENSPMRG00000011664)	GRM3 (ENSPMRG00000011689)	INTS13 (ENSPMRG00000011697) #21	FGFR1OP2 (ENSPMRG00000011709) #22	TM7SF3 (ENSPMRG00000011714) #24	MED21 (ENSPMRG00000011721) #25	STK38L (ENSPMRG00000011725) #28	ENSPMRG00000011736	ENSPMRG00000011746 #31	ENSPMRG00000011756	ENSPMRG00000011761 #31	CYB5R3 (ENSPMRG00000011773)	ENSPMRG00000011776	CACNA2D1 (ENSPMRG00000011795)	HGF (ENSPMRG00000011849)	ENSPMRG00000011862	ENSPMRG00000011864	SEMA3C (ENSPMRG00000011868)	CD36 (ENSPMRG00000011888)
tuatara	MODERN SPECIES	913								SSPN (ENSSPUG00000015511) #17	ENSSPUG00000015535 #20	ENSSPUG00000015584 #20	ENSSPUG00000015594	ENSSPUG00000015599	ENSSPUG00000015608 #20	ENSSPUG00000015615	INTS13 (ENSSPUG00000015622) #21	FGFR1OP2 (ENSSPUG00000015640) #22	TM7SF3 (ENSSPUG00000015652) #24	MED21 (ENSSPUG00000015658) #25	STK38L (ENSSPUG00000015664) #28	BMAL2 (ENSSPUG00000015684) #29	PPFIBP1 (ENSSPUG00000015727) #31	REP15 (ENSSPUG00000015779) #32	CYB5R3 (ENSSPUG00000015784)	ENSSPUG00000015809
Anura	ANCESTRAL SPECIES	84	ENSGT00940000163137	ENSGT01030000234535.D	ENSGT00390000000212	ENSGT00950000182939.b.a.b	ENSGT00940000156122	ENSGT00390000009532.A.d.a	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00910000144343	ENSGT00950000182839.B.a.a #15	ENSGT00940000161014 #16	ENSGT00390000007747 #17	ENSGT00940000156039 #20	ENSGT00390000002793 #21	ENSGT00390000018003.b #22	ENSGT00390000008702 #24
Frog	MODERN SPECIES	3	dnai7 (ENSXETG00000048107)	etfrf1 (ENSXETG00000046152)	krasl (ENSXETG00000043145)	ENSXETG00000038333	ENSXETG00000045065	nrip3 (ENSXETG00000041020)	ENSXETG00000046920	cecr5 (ENSXETG00000048547)	rab43 (ENSXETG00000049287)	ENSXETG00000046325	RASSF8 (ENSXETG00000037861) #15	bhlhe41 (ENSXETG00000045299) #16	SSPN (ENSXETG00000046931) #17	itpr2 (ENSXETG00000016448) #20	ints13 (ENSXETG00000047046) #21	fgfr1op2 (ENSXETG00000016502) #22	endoul (ENSXETG00000016505)	ppfibp1 (ENSXETG00000016522) ##31	cyb5r3 (ENSXETG00000016513)	rep15 (ENSXETG00000044538) #32	syt10 (ENSXETG00000048414)	XB5856770 [provisional] (ENSXETG00000031355)	pkp2 (ENSXETG00000042467)	arntl2 (ENSXETG00000046520) #29	stk38l (ENSXETG00000044165) #28	has1 (ENSXETG00000020515)	med21 (ENSXETG00000003233) #25	asb14 (ENSXETG00000003053)	kiaa0930 (ENSXETG00000045686)	smc1b (ENSXETG00000003064)	ribc2 (ENSXETG00000041766)
Leishan spiny toad	MODERN SPECIES	983															INTS13 (ENSLLEG00000011687) #21	FGFR1OP2 (ENSLLEG00000011918) #22	TM7SF3 (ENSLLEG00000012023) #24
Coelacanth	MODERN SPECIES	1187											si:ch211-245j22.3 (ENSLACG00000007673)	ENSLACG00000008628	BMAL2 (ENSLACG00000009646) #29	stk38l (ENSLACG00000010768) #28	MED21 (ENSLACG00000011828) #25	FGFR1OP2 (ENSLACG00000011948) #22	TM7SF3 (ENSLACG00000012234) #24	ENSLACG00000012806
Actinopterygii	ANCESTRAL SPECIES	44	ENSGT00390000010777	ENSGT00390000014084	ENSGT01030000234578.B.a	ENSGT00390000006747	ENSGT00950000183117.a.a	ENSGT00940000158254	ENSGT00940000155067.b.a	ENSGT00940000155067.a	ENSGT00940000155118	ENSGT00390000016813	ENSGT00940000155166.A	ENSGT00940000158600	ENSGT00940000159389	ENSGT00940000158037	ENSGT00940000158187	ENSGT00390000018003.b #22	ENSGT00390000008702 #24	ENSGT00390000014557 #25	ENSGT00940000153544.b #28	ENSGT00940000160423 #29	ENSGT00940000158677	ENSGT00940000166645	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b ##31	ENSGT00390000005178.a #32	ENSGT00940000153962.b	ENSGT00530000063825.A.c	ENSGT00950000183132.A	ENSGT01050000244879.b.a.b.a	ENSGT00390000014700.a	ENSGT00940000165765
Neopterygii	ANCESTRAL SPECIES	58	ENSGT00390000010777	ENSGT00390000014084	ENSGT01030000234578.B.a	ENSGT00390000006747	ENSGT00950000183117.a.a	ENSGT00940000158254	ENSGT00940000155067.b.a	ENSGT00940000155067.a	ENSGT00940000155118	ENSGT00390000016813	ENSGT00940000155166.A	ENSGT00940000158600	ENSGT00940000159389	ENSGT00940000158037	ENSGT00940000158187	ENSGT00390000018003.b #22	ENSGT00390000008702 #24	ENSGT00390000014557 #25	ENSGT00940000153544.b #28	ENSGT00940000160423 #29	ENSGT00940000158677	ENSGT00940000166645	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b ##31	ENSGT00390000005178.a #32	ENSGT00940000153962.b	ENSGT00530000063825.A.c.e	ENSGT00530000063825.A.c.f	ENSGT00950000183132.A	ENSGT01050000244879.b.a.b.a	ENSGT00390000014700.a
Osteoglossocephalai	ANCESTRAL SPECIES	226																ENSGT00390000018003.b #22	ENSGT00390000008702 #24	ENSGT00390000014557 #25	ENSGT00940000153544.b #28	ENSGT00940000160423 #29	ENSGT00940000158677	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b ##31	ENSGT00940000153962.b	ENSGT00530000063825.A.c.e	ENSGT00530000063825.A.c.f	ENSGT00950000183132.A	ENSGT01050000244879.b.a.b.a	ENSGT00390000014700.a	ENSGT00940000165765	ENSGT00390000013899.a.a
Osteoglossiformes	ANCESTRAL SPECIES																	ENSGT00390000018003.b #22
Asian bonytongue	MODERN SPECIES	20	AVPR1A (ENSSFOG00015025619)	rxylt1 (ENSSFOG00015003030)	SRGAP1 (ENSSFOG00015003082)	parp12a (ENSSFOG00015003427)	tbxas1 (ENSSFOG00015003485)	hipk2 (ENSSFOG00015003537)	ENSSFOG00015003591	mical3a (ENSSFOG00015003690)	ttc38 (ENSSFOG00015003861)	tspan33b (ENSSFOG00015003911)	tspan9b (ENSSFOG00015003925)	PRMT8 (ENSSFOG00015032480)	CRACR2A (ENSSFOG00015004037)	TMTC2 (ENSSFOG00015004053)	nr1h4 (ENSSFOG00015004131)	fgfr1op2 (ENSSFOG00015004186) #22	prkcq (ENSSFOG00015004223)	pfkfb3 (ENSSFOG00015004295)	ENSSFOG00015030181	ENSSFOG00015028143	ENSSFOG00015025232	ENSSFOG00015030178	ENSSFOG00015024922	rbm17 (ENSSFOG00015009892)	chchd3a (ENSSFOG00015009965)	copg2 (ENSSFOG00015010009)	dcn (ENSSFOG00015010107)	LUM (ENSSFOG00015010156)	EPYC (ENSSFOG00015010251)	HGF (ENSSFOG00015022587)	CACNA2D1 (ENSSFOG00015022561)
P. kingsleyae	MODERN SPECIES	399							ENSPKIG00000005565	pdlim1 (ENSPKIG00000005554)	ENSPKIG00000005538	ENSPKIG00000005306	ALDH18A1 (ENSPKIG00000005180)	ENSPKIG00000005129	MGMT (ENSPKIG00000005102)	rbm17 (ENSPKIG00000005048)	prkcq (ENSPKIG00000004934)	fgfr1op2 (ENSPKIG00000004879) #22	ENSPKIG00000004862
Clupeocephala	ANCESTRAL SPECIES	352									ENSGT00940000158600	ENSGT00950000183146.a.a	ENSGT00940000158917	ENSGT00940000155486	ENSGT00950000183205.b.a.b.a.b	ENSGT00390000016138	ENSGT00940000159389	ENSGT00390000018003.b #22	ENSGT00390000008702 #24	ENSGT00390000014557 #25	ENSGT00940000153544.b #28	ENSGT00940000160423.b #29	ENSGT00940000158677
Otomorpha	ANCESTRAL SPECIES	335									ENSGT00940000158600	ENSGT00950000183146.a.a	ENSGT00940000158917	ENSGT00940000155486	ENSGT00950000183205.b.a.b.a.b	ENSGT00390000016138	ENSGT00940000159389	ENSGT00390000018003.b #22	ENSGT00390000008702 #24	ENSGT00390000014557 #25	ENSGT00940000153544.b #28	ENSGT00940000160423.b #29	ENSGT00940000158677	ENSGT00940000155210.a.b	ENSGT00540000070023.d.k.a	ENSGT00940000165713	ENSGT00940000167467	ENSGT00390000017324	ENSGT00940000158969	ENSGT00390000002793 #21
Clupeiformes	ANCESTRAL SPECIES	211								ENSGT00390000016138	ENSGT00950000183205.b.a.b.a.b	ENSGT00940000155486	ENSGT00940000158917	ENSGT00950000183146.a.a	ENSGT00940000158600	ENSGT00390000004697	ENSGT00940000159389	ENSGT00390000018003.b #22	ENSGT00390000008702 #24	ENSGT00390000014557 #25	ENSGT00940000153544.b #28	ENSGT00940000160423.b #29	ENSGT00940000158677	ENSGT00950000182839.B.a.a.k #15	ENSGT00940000155210.a.b	ENSGT00540000070023.c.b	ENSGT00940000165713	ENSGT00940000167467	ENSGT00390000017324	ENSGT00940000158969	ENSGT00390000002793 #21	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b ##31
Atlantic herring	MODERN SPECIES	7	UBE2H (ENSCHAG00000017331)	zc3hc1 (ENSCHAG00000017303)	klhdc10 (ENSCHAG00000017062)	slc38a2 (ENSCHAG00000013945)	ENSCHAG00000013895	ENSCHAG00000013872	ENSCHAG00000013845	arid2 (ENSCHAG00000013809)	slc38a4 (ENSCHAG00000013550)	ENSCHAG00000013518	ANO4 (ENSCHAG00000012846)	ENSCHAG00000012800	ENSCHAG00000012780	ENSCHAG00000012755	gas2l3 (ENSCHAG00000012747)	fgfr1op2 (ENSCHAG00000012718) #22	ENSCHAG00000012655	TM7SF3 (ENSCHAG00000012355) #24	med21 (ENSCHAG00000012305) #25	stk38l (ENSCHAG00000011858) #28	BMAL2 (ENSCHAG00000011743) #29	pkp2 (ENSCHAG00000011682)	ENSCHAG00000011665	rassf8b (ENSCHAG00000011650) #15	nudt4b (ENSCHAG00000011637)	ENSCHAG00000011608	mrpl42 (ENSCHAG00000011586)	ENSCHAG00000011567	pwp1 (ENSCHAG00000010547)	ANO6 (ENSCHAG00000007784)	ints13 (ENSCHAG00000006399) #21
Denticle herring	MODERN SPECIES	6	TMTC1 (ENSDCDG00000032381)	ovch1 (ENSDCDG00000032340)	lmf2b (ENSDCDG00000032334)	ttll12 (ENSDCDG00000032313)	pnpla3 (ENSDCDG00000032299)	sult4a1 (ENSDCDG00000032298)	MPPED1 (ENSDCDG00000032297)	scube1 (ENSDCDG00000031849)	ALDH1L2 (ENSDCDG00000031759)	nopchap1 (ENSDCDG00000031742)	SLC41A2 (ENSDCDG00000031649)	chst11 (ENSDCDG00000031635)	ANO4 (ENSDCDG00000031407)	ENSDCDG00000031355	gas2l3 (ENSDCDG00000031352)	fgfr1op2 (ENSDCDG00000031347) #22	TM7SF3 (ENSDCDG00000031165) #24	med21 (ENSDCDG00000031154) #25	stk38l (ENSDCDG00000031147) #28	BMAL2 (ENSDCDG00000031141) #29	pkp2 (ENSDCDG00000031139)	ENSDCDG00000031138	rassf8b (ENSDCDG00000031136) #15	nudt4b (ENSDCDG00000031134)	UBE2N (ENSDCDG00000031133)	mrpl42 (ENSDCDG00000031132)	pwp1 (ENSDCDG00000031082)	slc38a4 (ENSDCDG00000030114)	slc38a2 (ENSDCDG00000028646)	ENSDCDG00000028573	arid2 (ENSDCDG00000028057)
Otophysi	ANCESTRAL SPECIES	119	ENSGT00390000006670	ENSGT00940000157926	ENSGT01030000235060	ENSGT00530000064318	ENSGT00940000154479.a.a.b	ENSGT00430000031071	ENSGT00940000158940.a	ENSGT00390000007640.a	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00940000158155	ENSGT00940000158917	ENSGT00940000155486	ENSGT00950000183205.b.a.b.a.b	ENSGT00390000016138	ENSGT00940000159389	ENSGT00390000018003.b #22	ENSGT00390000008702 #24	ENSGT00390000014557 #25	ENSGT00940000156608	ENSGT00940000155441	ENSGT00940000155210.a.b	ENSGT00540000070023.d.k.a	ENSGT00940000165713	ENSGT00390000017324	ENSGT00940000158969
Characiphysae	ANCESTRAL SPECIES	63	ENSGT00390000006670	ENSGT00940000157926	ENSGT01030000235060	ENSGT00530000064318	ENSGT00940000154479.a.a.b	ENSGT00430000031071	ENSGT00940000158940.a	ENSGT00390000007640.a	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00940000158155	ENSGT00940000158917	ENSGT00940000155486	ENSGT00950000183205.b.a.b.a.b	ENSGT00390000016138	ENSGT00940000159389	ENSGT00390000018003.b #22	ENSGT00390000008702 #24	ENSGT00390000014557 #25	ENSGT00940000156608	ENSGT00940000155441	ENSGT00940000155210.a.b	ENSGT00940000158677	ENSGT00940000153678.a.a	ENSGT00390000006485.c.sc	ENSGT00940000153438.b	ENSGT00950000182952.C.h	ENSGT00390000005378	ENSGT00950000182999.b.a.a	ENSGT00940000160124 #35	ENSGT00940000156000	ENSGT00390000014084
Channel catfish	MODERN SPECIES	5	fbxo7 (ENSIPUG00000015476)	echdc3 (ENSIPUG00000015491)	proser2 (ENSIPUG00000015501)	UPF2 (ENSIPUG00000015524)	fam180a (ENSIPUG00000015785)	mtpn (ENSIPUG00000015792)	chrm2a (ENSIPUG00000015809)	ptn (ENSIPUG00000015819)	ENSIPUG00000015825	TULP3 (ENSIPUG00000015848)	slc38a4 (ENSIPUG00000015906)	slc38a2 (ENSIPUG00000015924)	scaf11 (ENSIPUG00000015943)	ARID2 (ENSIPUG00000015959)	GAS2L3 (ENSIPUG00000016008)	fgfr1op2 (ENSIPUG00000016036) #22	tm7sf3 (ENSIPUG00000016064) #24	med21 (ENSIPUG00000016119) #25	pmpcb (ENSIPUG00000016136)	dnajc2 (ENSIPUG00000016177)	nudt4b (ENSIPUG00000016210)	pkp2 (ENSIPUG00000016227)	dennd5b (ENSIPUG00000016271)	FAM60A (ENSIPUG00000016490)	caprin2 (ENSIPUG00000016517)	btg1 (ENSIPUG00000016587)	ENSIPUG00000016632	cat (ENSIPUG00000016679)	itfg2 (ENSIPUG00000016788)	nrip2 (ENSIPUG00000016853)	klhl42 (ENSIPUG00000016864) #35
Characiphysae_b	ANCESTRAL SPECIES	31	ENSGT00940000157926	ENSGT01030000235060	ENSGT00530000064318	ENSGT00940000154479.a.a.b	ENSGT00430000031071	ENSGT00940000158940.a	ENSGT00390000007640.a	ENSGT01030000234583.a.a.c.a.b.b.a	ENSGT01030000234583.a.a.c.a.b.b.b	ENSGT00940000158155	ENSGT00940000158917	ENSGT00940000155486	ENSGT00950000183205.b.a.b.a.b	ENSGT00390000016138	ENSGT00940000159389	ENSGT00390000018003.b #22	ENSGT00390000008702 #24	ENSGT00390000014557 #25	ENSGT00940000156608	ENSGT00940000155441	ENSGT00940000155210.a.b	ENSGT00940000158677	ENSGT00940000153678.a.a	ENSGT00390000006485.c.sc	ENSGT00940000153438.b	ENSGT00950000182952.C.h	ENSGT00390000005378	ENSGT00950000182999.b.a.a	ENSGT00940000160124 #35	ENSGT00940000156000	ENSGT00390000014084
Characoidei	ANCESTRAL SPECIES	80								ENSGT01030000234583.a.a.c.a.b.b.a	ENSGT01030000234583.a.a.c.a.b.b.b	ENSGT00940000158155	ENSGT00940000158917	ENSGT00940000155486	ENSGT00950000183205.b.a.b.a.b	ENSGT00390000016138	ENSGT00940000159389	ENSGT00390000018003.b #22	ENSGT00390000008702 #24	ENSGT00390000014557 #25	ENSGT00940000156608	ENSGT00940000155441	ENSGT00940000155210.a.b	ENSGT00940000158677	ENSGT00940000153678.a.a	ENSGT00390000006485.c.sc	ENSGT00940000153438.b	ENSGT00950000182952.C.h	ENSGT00390000005378	ENSGT00950000182999.b.a.a	ENSGT00940000160124 #35	ENSGT00940000156000	ENSGT00390000014084
Red-bellied piranha	MODERN SPECIES	272																fgfr1op2 (ENSPNAG00000017156) #22	TM7SF3 (ENSPNAG00000017172) #24	med21 (ENSPNAG00000017182) #25	pmpcb (ENSPNAG00000017229)	dnajc2 (ENSPNAG00000017305)	nudt4b (ENSPNAG00000017347)	pkp2 (ENSPNAG00000017362)	dennd5b (ENSPNAG00000017640)	sinhcaf (ENSPNAG00000017661)	caprin2 (ENSPNAG00000017781)	btg1 (ENSPNAG00000004956)	itfg2 (ENSPNAG00000017847)	nrip2 (ENSPNAG00000017860)	klhl42 (ENSPNAG00000017881) #35	cwf19l1 (ENSPNAG00000017936)	washc3 (ENSPNAG00000017945)
Mexicana tetra	MODERN SPECIES	22	CACNA2D4 (ENSAMXG00000036880)	LRTM2 (ENSAMXG00000007693)	ENSAMXG00000030766	stk38l (ENSAMXG00000003684) #28	napepld (ENSAMXG00000003675)	rassf8b (ENSAMXG00000010389) #15	ENSAMXG00000030312	ints13 (ENSAMXG00000003664) #21	ndufa5 (ENSAMXG00000003659)	asb15b (ENSAMXG00000003652)	ENSAMXG00000043926	ENSAMXG00000039591	waslb (ENSAMXG00000041475)	gpr37b (ENSAMXG00000003640)	gas2l3 (ENSAMXG00000030075)	fgfr1op2 (ENSAMXG00000039243) #22	TM7SF3 (ENSAMXG00000042075) #24	med21 (ENSAMXG00000037449) #25	pmpcb (ENSAMXG00000007214)	dnajc2 (ENSAMXG00000007216)	nudt4b (ENSAMXG00000040513)	pkp2 (ENSAMXG00000007234)	dennd5b (ENSAMXG00000007247)	sinhcaf (ENSAMXG00000041503)	caprin2 (ENSAMXG00000007266)	btg1 (ENSAMXG00000042550)	itfg2 (ENSAMXG00000042592)	nrip2 (ENSAMXG00000035836)	klhl42 (ENSAMXG00000040776) #35	cwf19l1 (ENSAMXG00000007302)	washc3 (ENSAMXG00000007318)
Electric eel	MODERN SPECIES	161	H6PD (ENSEEEG00000021187)	epha2a (ENSEEEG00000021190)	rbm19 (ENSEEEG00000021194)	ENSEEEG00000021201	shmt2 (ENSEEEG00000021230)	NXPH4 (ENSEEEG00000021554)	R3HDM2 (ENSEEEG00000021560)	INHBC (ENSEEEG00000021577)	gli1 (ENSEEEG00000021580)	ARHGAP9 (ENSEEEG00000021582)	mars1 (ENSEEEG00000021584)	ddit3 (ENSEEEG00000021651)	ENSEEEG00000021652	FAM20B (ENSEEEG00000021656)	gas2l3 (ENSEEEG00000021663)	fgfr1op2 (ENSEEEG00000021667) #22	TM7SF3 (ENSEEEG00000021670) #24	med21 (ENSEEEG00000021673) #25	pmpcb (ENSEEEG00000021722)	dnajc2 (ENSEEEG00000022102)	nudt4b (ENSEEEG00000022103)	pkp2 (ENSEEEG00000022106)	dennd5b (ENSEEEG00000022108)
Cyprinoidei	ANCESTRAL SPECIES	62	ENSGT00940000156749	ENSGT00940000157926	ENSGT01030000235060	ENSGT00530000064318	ENSGT00940000154479.a.a.b	ENSGT00430000031071	ENSGT00940000158940.a	ENSGT00390000007640.a	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00940000158155	ENSGT00940000158917	ENSGT00940000155486	ENSGT00950000183205.b.a.b.a.b	ENSGT00390000016138.y	ENSGT00940000159389	ENSGT00390000018003.b #22	ENSGT00390000008702 #24	ENSGT00390000014557.fb #25	ENSGT00940000156608.bb	ENSGT00390000014557.gb #25	ENSGT00940000156608.cb	ENSGT00940000155441	ENSGT00940000155210.a.b	ENSGT00540000070023.d.k.a	ENSGT00940000165713	ENSGT00390000017324	ENSGT00940000158969	ENSGT01100000263571.i.a.a.a	ENSGT00390000006367.c	ENSGT00730000110905.b	ENSGT00940000155811
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	409	ENSGT00430000031071.c.b	ENSGT00940000158940.a.a	ENSGT00390000007640.a.h	ENSGT01030000234583.a.a.c.a.b.b.d	ENSGT00430000031071.d	ENSGT00940000158940.a.b	ENSGT00390000007640.a.g.a.a	ENSGT01030000234583.a.a.c.a.b.b.c.a.b	ENSGT01030000234583.a.a.c.a.b.b.c.a.a	ENSGT00940000158155	ENSGT00940000158917.d	ENSGT00940000155486.f	ENSGT00950000183205.b.a.b.a.b.e	ENSGT00390000016138.y.b	ENSGT00940000159389.h	ENSGT00390000018003.b.a #22	ENSGT00390000008702.g #24	ENSGT00390000014557.fb.a #25	ENSGT00940000156608.cb.b	ENSGT00940000156608.cb.a.a	ENSGT00940000155441.ab	ENSGT00940000155210.a.b.b	ENSGT00540000070023.d.l
Cyprininae_a	ANCESTRAL SPECIES	218	ENSGT00390000006670.g	ENSGT00940000157926	ENSGT01030000235060	ENSGT00530000064318	ENSGT00940000154479.a.a.b.h	ENSGT00430000031071.c.b	ENSGT00940000158940.a.a	ENSGT00390000007640.a.h	ENSGT01030000234583.a.a.c.a.b.b.d	ENSGT00940000158155.a	ENSGT00940000158917.c	ENSGT00940000155486.e.b	ENSGT00950000183205.b.a.b.a.b.f	ENSGT00390000016138.y.a	ENSGT00940000159389.g	ENSGT00390000018003.b.a #22	ENSGT00390000008702.h #24	ENSGT00390000014557.fb.b #25	ENSGT00940000156608.cb.a.b	ENSGT00940000155441.`b	ENSGT00390000017324.t	ENSGT00940000158969.c	ENSGT01100000263571.i.a.a.a.a.a.b.b	ENSGT00390000006367.c.l	ENSGT00730000110905.b.p	ENSGT00940000155811.s	ENSGT00940000157033.g.b	ENSGT00940000157371.mb.b	ENSGT00440000034107.b.b	ENSGT00390000010830.z	ENSGT00390000018775.b
Golden-line barbel	MODERN SPECIES	128											slc38a4 (ENSSGRG00000054660)	slc38a2 (ENSSGRG00000054668)	ENSSGRG00000054700	arid2 (ENSSGRG00000054711)	gas2l3 (ENSSGRG00000054755)	fgfr1op2 (ENSSGRG00000054757) #22	TM7SF3 (ENSSGRG00000054760) #24	med21 (ENSSGRG00000054772) #25	PMPCB (ENSSGRG00000054779)	dnajc2 (ENSSGRG00000054806)	mrpl42 (ENSSGRG00000054807)	ANO6 (ENSSGRG00000054809)	ENSSGRG00000054812	si:dkey-97m3.1 (ENSSGRG00000054813)	cpsf6 (ENSSGRG00000054820)	yeats4 (ENSSGRG00000054821)	frs2a (ENSSGRG00000054823)	kcnc2 (ENSSGRG00000054824)	ENSSGRG00000054826	cmah (ENSSGRG00000054828)	krr1 (ENSSGRG00000054834)
Goldfish	MODERN SPECIES	33	ECHDC3 (ENSCARG00000013177)	ENSCARG00000013186	UPF2 (ENSCARG00000013221)	ENSCARG00000013573	mtpn (ENSCARG00000013578)	chrm2a (ENSCARG00000013582)	ptn (ENSCARG00000013586)	ENSCARG00000013593	ENSCARG00000013601	TULP3 (ENSCARG00000013612)	slc38a4 (ENSCARG00000013654)	slc38a2 (ENSCARG00000014369)	ENSCARG00000014479	arid2 (ENSCARG00000014528)	gas2l3 (ENSCARG00000015605)	fgfr1op2 (ENSCARG00000015612) #22	TM7SF3 (ENSCARG00000015625) #24	med21 (ENSCARG00000015864) #25	pmpcb (ENSCARG00000015899)	dnajc2 (ENSCARG00000017038)	nudt4b (ENSCARG00000017128)	UBE2N (ENSCARG00000017146)	pwp1 (ENSCARG00000017185)	ANO6 (ENSCARG00000017324)	ENSCARG00000017669	si:dkey-97m3.1 (ENSCARG00000017699)	arid2 (ENSCARG00000017809)	ENSCARG00000017984	slc38a2 (ENSCARG00000018047)	ENSCARG00000018387	slc38a4 (ENSCARG00000018446)
Cyprininae	ANCESTRAL SPECIES	795											ENSGT00940000158917.c	ENSGT00940000155486.e	ENSGT00950000183205.b.a.b.a.b.f	ENSGT00390000016138.y.a	ENSGT00940000159389.g	ENSGT00390000018003.b.b #22	ENSGT00390000008702.h #24	ENSGT00390000014557.fb.b #25	ENSGT00940000156608.bb
Goldfish	DUPLICATION
Goldfish	MODERN SPECIES	21	plxna4 (ENSCARG00000005733)	nrf1 (ENSCARG00000006064)	ube2h (ENSCARG00000006138)	zc3hc1 (ENSCARG00000006178)	klhdc10 (ENSCARG00000006202)	smo (ENSCARG00000006387)	tspan33a (ENSCARG00000006737)	slc26a5 (ENSCARG00000006792)	psmc2 (ENSCARG00000006828)	prdm4 (ENSCARG00000006867)	akr1b1.2 (ENSCARG00000006920)	akr1b1.1 (ENSCARG00000006965)	shisal1a (ENSCARG00000007597)	arid2 (ENSCARG00000007634)	gas2l3 (ENSCARG00000007732)	fgfr1op2 (ENSCARG00000007760) #22	TM7SF3 (ENSCARG00000007779) #24	med21 (ENSCARG00000007874) #25	pmpcb (ENSCARG00000007920)	dnajc2 (ENSCARG00000008520)	nudt4b (ENSCARG00000008605)	ENSCARG00000008618	mrpl42 (ENSCARG00000008651)	ANO6 (ENSCARG00000008732)	ENSCARG00000009923	zdhhc17 (ENSCARG00000009966)	csrp2 (ENSCARG00000009996)	e2f7 (ENSCARG00000010011)	rergla (ENSCARG00000010032)	ENSCARG00000010044	mkrn1 (ENSCARG00000010065)
Goldfish	MODERN SPECIES	21	ENSCARG00000012698	sobpb (ENSCARG00000012686)	OSBPL8 (ENSCARG00000010045)	nap1l1 (ENSCARG00000009739)	phlda1 (ENSCARG00000009728)	krr1 (ENSCARG00000009535)	cmah (ENSCARG00000009453)	ENSCARG00000009427	kcnc2 (ENSCARG00000009407)	yeats4 (ENSCARG00000009373)	cpsf6 (ENSCARG00000009351)	si:dkey-97m3.1 (ENSCARG00000009329)	ENSCARG00000009319	ENSCARG00000009314	gas2l3 (ENSCARG00000009299)	fgfr1op2 (ENSCARG00000009294) #22	TM7SF3 (ENSCARG00000009250) #24	MED21 (ENSCARG00000009238) #25	pmpcb (ENSCARG00000008354)	dnajc2 (ENSCARG00000007950)	TMEM60 (ENSCARG00000007938)	ENSCARG00000007063	ENSCARG00000006986	RSBN1L (ENSCARG00000006972)	ENSCARG00000006958	tmem63a (ENSCARG00000006835)	rsph9 (ENSCARG00000006809)	mrps18a (ENSCARG00000006798)	vegfab (ENSCARG00000006785)	si:dkey-14d8.6 (ENSCARG00000006773)	mapk12b (ENSCARG00000006370)
Cyprininae_a	ANCESTRAL SPECIES	522											ENSGT00940000158917.d	ENSGT00940000155486.e.a	ENSGT00950000183205.b.a.b.a.b.e	ENSGT00390000016138.y.b	ENSGT00940000159389.h	ENSGT00390000018003.b.b #22	ENSGT00390000008702.g #24	ENSGT00390000014557.fb.a #25	ENSGT00940000156608.cb.b	ENSGT00940000156608.cb.a.a	ENSGT00940000155441.ab	ENSGT00940000155210.a.b.b	ENSGT00540000070023.d.l
Common carp reference	DUPLICATION
Common carp reference	MODERN SPECIES	8	ENSCCRG00000073065	ENSCCRG00000076368	ENSCCRG00000014266	ENSCCRG00000013067	mtpn (ENSCCRG00000070281)	chrm2a (ENSCCRG00000079628)	ptn (ENSCCRG00000061849)	ENSCCRG00000059442	ENSCCRG00000049663	ENSCCRG00000073804	slc38a4 (ENSCCRG00000014057)	slc38a2 (ENSCCRG00000057192)	ENSCCRG00000046715	arid2 (ENSCCRG00000041045)	gas2l3 (ENSCCRG00000041032)	fgfr1op2 (ENSCCRG00000076652) #22	ENSCCRG00000040047 #24	pmpcb (ENSCCRG00000077712)	dnajc2 (ENSCCRG00000053543)	nudt4b (ENSCCRG00000002580)	ENSCCRG00000056223	mrpl42 (ENSCCRG00000003146)	pwp1 (ENSCCRG00000003190)	ENSCCRG00000005991	ENSCCRG00000008409	si:dkey-97m3.1 (ENSCCRG00000005286)	cpsf6 (ENSCCRG00000055889)	yeats4 (ENSCCRG00000074729)	frs2a (ENSCCRG00000013888)	kcnc2 (ENSCCRG00000043410)	ENSCCRG00000064073
Common carp reference	MODERN SPECIES	36	ENSCCRG00000023542	ENSCCRG00000068503	ENSCCRG00000064327	ENSCCRG00000057668	mtpn (ENSCCRG00000053526)	ENSCCRG00000043781	chrm2a (ENSCCRG00000060046)	ptn (ENSCCRG00000054561)	ENSCCRG00000065942	ENSCCRG00000014132	slc38a4 (ENSCCRG00000003361)	slc38a2 (ENSCCRG00000046753)	ENSCCRG00000022024	arid2 (ENSCCRG00000046811)	gas2l3 (ENSCCRG00000081074)	fgfr1op2 (ENSCCRG00000037959) #22	med21 (ENSCCRG00000040014) #25	ENSCCRG00000037980 #24	pmpcb (ENSCCRG00000002987)	dnajc2 (ENSCCRG00000003070)	nudt4b (ENSCCRG00000041003)	ENSCCRG00000040904	ENSCCRG00000040892	ENSCCRG00000039643	ENSCCRG00000076895	ENSCCRG00000077545	ENSCCRG00000079720	ENSCCRG00000043792	ENSCCRG00000043796	si:dkey-97m3.1 (ENSCCRG00000000430)	ENSCCRG00000000395
Golden-line barbel	MODERN SPECIES	547											slc38a4 (ENSSGRG00000005357)	slc38a2 (ENSSGRG00000004139)	ENSSGRG00000004088	arid2 (ENSSGRG00000002360)	gas2l3 (ENSSGRG00000002327)	fgfr1op2 (ENSSGRG00000002326) #22	TM7SF3 (ENSSGRG00000002324) #24	med21 (ENSSGRG00000002314) #25	pmpcb (ENSSGRG00000002210)	ENSSGRG00000002208	dnajc2 (ENSSGRG00000001321)	nudt4b (ENSSGRG00000051175)	ENSSGRG00000051174	pwp1 (ENSSGRG00000051173)	ANO6 (ENSSGRG00000051171)	ENSSGRG00000051166	si:dkey-97m3.1 (ENSSGRG00000051132)	cpsf6 (ENSSGRG00000051109)	yeats4 (ENSSGRG00000051091)	frs2a (ENSSGRG00000051090)	kcnc2 (ENSSGRG00000051088)
Zebrafish	MODERN SPECIES	19	rpap3 (ENSDARG00000087962)	naga (ENSDARG00000099313)	ENSDARG00000103102	mtpn (ENSDARG00000104018)	ENSDARG00000102157	chrm2a (ENSDARG00000098612)	ptn (ENSDARG00000102340)	ENSDARG00000111388	ENSDARG00000025601	ENSDARG00000063672	slc38a4 (ENSDARG00000018149)	slc38a2 (ENSDARG00000045886)	ENSDARG00000045885	arid2 (ENSDARG00000007413)	gas2l3 (ENSDARG00000045880)	fgfr1op2 (ENSDARG00000009657) #22	TM7SF3 (ENSDARG00000093658) #24	med21 (ENSDARG00000026839) #25	pmpcb (ENSDARG00000016979)	dnajc2 (ENSDARG00000070477)	nudt4b (ENSDARG00000045878)	ube2nb (ENSDARG00000045877)	mrpl42 (ENSDARG00000079391)	pwp1 (ENSDARG00000015921)	ANO6 (ENSDARG00000061544)	ENSDARG00000020812	FAR2 (ENSDARG00000009262)	cpsf6 (ENSDARG00000018618)	yeats4 (ENSDARG00000045874)	kcnc2 (ENSDARG00000057468)	frs2a (ENSDARG00000045873)
Euteleosteomorpha	ANCESTRAL SPECIES	392																ENSGT00390000018003.b #22	ENSGT00390000008702 #24	ENSGT00390000014557 #25	ENSGT00940000153544.b #28	ENSGT00940000160423.b #29
Acanthomorphata	ANCESTRAL SPECIES	254													ENSGT00940000160423.b #29	ENSGT00940000153544.b #28	ENSGT00390000014557 #25	ENSGT00390000018003.b #22	ENSGT00390000008702 #24	ENSGT00940000159389	ENSGT00390000016138	ENSGT00950000183205.b.a.b.a.b	ENSGT01010000230272	ENSGT00940000155486	ENSGT00940000158917	ENSGT00950000183146.a.a	ENSGT00940000158600
Euacanthomorphacea	ANCESTRAL SPECIES	18	ENSGT00390000011669	ENSGT00790000123099	ENSGT00950000182835.d.b	ENSGT00390000007725.A.a	ENSGT00940000179100	ENSGT00940000155840.B	ENSGT00940000156858	ENSGT00390000011239.j	ENSGT00940000155529.B	ENSGT00390000004094	ENSGT01030000234550.a.a.d.a.b	ENSGT00940000166253	ENSGT00940000160423.b #29	ENSGT00940000153544.b #28	ENSGT00390000014557 #25	ENSGT00390000018003.b #22	ENSGT00390000008702 #24	ENSGT00940000159389	ENSGT00390000016138	ENSGT00950000183205.b.a.b.a.b	ENSGT00940000155486	ENSGT00940000158917	ENSGT00950000183146.a.a	ENSGT00940000158600	ENSGT01100000263519.A.b.b.a.a.c	ENSGT00530000063540.b	ENSGT00940000153744.B	ENSGT00390000009992	ENSGT01100000263519.D	ENSGT01060000248677	ENSGT00940000158014
Percomorphaceae	ANCESTRAL SPECIES	19	ENSGT01030000234868	ENSGT00790000123099	ENSGT00950000182835.d.b	ENSGT00390000007725.A.a	ENSGT00940000179100	ENSGT00940000155840.B	ENSGT00940000156858	ENSGT00390000011239.j	ENSGT00940000155529.B	ENSGT00390000004094	ENSGT01030000234550.a.a.d.a.b	ENSGT00940000166253	ENSGT00940000160423.b #29	ENSGT00940000153544.b #28	ENSGT00390000014557 #25	ENSGT00390000018003.b #22	ENSGT00390000008702 #24	ENSGT00940000159389	ENSGT00390000016138	ENSGT00950000183205.b.a.b.a.b	ENSGT00940000155486	ENSGT00940000158917	ENSGT00950000183146.a.a	ENSGT00940000158600	ENSGT01100000263519.A.b.b.a.a.c	ENSGT00530000063540.b	ENSGT00940000153744.B	ENSGT00390000009992	ENSGT01100000263519.D	ENSGT01060000248677	ENSGT00940000158014
Percomorphaceae_B	ANCESTRAL SPECIES	21	ENSGT01030000234868	ENSGT00790000123099	ENSGT00950000182835.d.b	ENSGT00390000007725.A.a	ENSGT00940000179100	ENSGT00940000155840.B	ENSGT00940000156858	ENSGT00390000011239.j	ENSGT00940000155529.B	ENSGT00390000004094	ENSGT01030000234550.a.a.d.a.b	ENSGT00940000166253	ENSGT00940000160423.b #29	ENSGT00940000153544.b #28	ENSGT00390000014557 #25	ENSGT00390000018003.b #22	ENSGT00390000008702 #24	ENSGT00940000159389	ENSGT00390000016138	ENSGT00950000183205.b.a.b.a.b	ENSGT00940000155486	ENSGT00940000158917	ENSGT00950000183146.a.a	ENSGT00940000158600	ENSGT00950000182866.D.d.a.c.b.a.a	ENSGT00940000164836	ENSGT01070000253760.b.b.a.a.c.b	ENSGT00940000178511	ENSGT00390000005508.a.b	ENSGT01100000263533.b.b.b.a.b.a.b	ENSGT00940000153582.a.n
Ovalentaria	ANCESTRAL SPECIES	22	ENSGT00390000011669	ENSGT01030000234868	ENSGT00790000123099	ENSGT00950000182835.d.b	ENSGT00390000007725.A.a	ENSGT00940000155840.B	ENSGT00940000156858	ENSGT00390000011239.j	ENSGT00940000155529.B	ENSGT00390000004094	ENSGT01030000234550.a.a.d.a.b	ENSGT00940000166253	ENSGT00940000160423.b #29	ENSGT00940000153544.b #28	ENSGT00390000014557 #25	ENSGT00390000018003.b #22	ENSGT00390000008702 #24	ENSGT00940000159389	ENSGT00390000016138	ENSGT00950000183205.b.a.b.a.b	ENSGT00940000155486	ENSGT00940000158917	ENSGT00950000183146.a.a	ENSGT00940000158600	ENSGT00950000182866.D.d.a.c.b.a.a	ENSGT00940000164836	ENSGT01070000253760.b.b.a.a.c.b	ENSGT00940000178511	ENSGT00390000005508.a.b	ENSGT01100000263533.b.b.b.a.b.a.b	ENSGT00530000063540.b
Ovalentaria_B	ANCESTRAL SPECIES	29	ENSGT00390000011669	ENSGT01030000234868	ENSGT00790000123099	ENSGT00950000182835.d.b	ENSGT00390000007725.A.a	ENSGT00940000155840.B	ENSGT00940000156858	ENSGT00390000011239.j	ENSGT00940000155529.B	ENSGT00390000004094	ENSGT01030000234550.a.a.d.a.b	ENSGT00940000166253	ENSGT00940000160423.b #29	ENSGT00940000153544.b #28	ENSGT00390000014557 #25	ENSGT00390000018003.b #22	ENSGT00390000008702 #24	ENSGT00940000159389	ENSGT00390000016138	ENSGT00950000183205.b.a.b.a.b	ENSGT00940000155486	ENSGT00940000158917	ENSGT00950000183146.a.a	ENSGT00940000158600	ENSGT00950000182866.D.d.a.c.b.a.a	ENSGT00940000164836	ENSGT01070000253760.b.b.a.a.c.b	ENSGT00940000178511	ENSGT00390000005508.a.b	ENSGT01100000263533.b.b.b.a.b.a.b	ENSGT00530000063540.b
Pomacentridae	ANCESTRAL SPECIES	65	ENSGT00390000011669	ENSGT01030000234868	ENSGT00790000123099	ENSGT00950000182835.d.b	ENSGT00390000007725.A.a	ENSGT00940000155840.B	ENSGT00940000156858	ENSGT00390000011239.j	ENSGT00940000155529.B	ENSGT00390000004094	ENSGT01030000234550.a.a.d.a.b	ENSGT00940000166253	ENSGT00940000160423.b #29	ENSGT00940000153544.b #28	ENSGT00390000014557 #25	ENSGT00390000018003.b #22	ENSGT00390000008702 #24	ENSGT00940000159389	ENSGT00390000016138	ENSGT00950000183205.b.a.b.a.b	ENSGT00940000155486	ENSGT00940000158917.f	ENSGT00950000183146.a.a	ENSGT00940000158600	ENSGT00950000182866.D.d.a.c.b.a.a	ENSGT00940000164836	ENSGT01070000253760.b.b.a.a.c.b	ENSGT00940000178511	ENSGT00390000005508.a.b	ENSGT01100000263533.b.b.b.a.b.a.b	ENSGT00530000063540.b
Pomacentridae_A	ANCESTRAL SPECIES	64	ENSGT00390000011669	ENSGT01030000234868	ENSGT00790000123099	ENSGT00950000182835.d.b	ENSGT00390000007725.A.a	ENSGT00940000155840.B	ENSGT00940000156858	ENSGT00390000011239.j	ENSGT00940000155529.B	ENSGT00390000004094	ENSGT01030000234550.a.a.d.a.b	ENSGT00940000166253	ENSGT00940000160423.b #29	ENSGT00940000153544.b #28	ENSGT00390000014557 #25	ENSGT00390000018003.b #22	ENSGT00390000008702 #24	ENSGT00940000159389	ENSGT00390000016138	ENSGT00950000183205.b.a.b.a.b	ENSGT00940000155486	ENSGT00940000158917.f	ENSGT00950000183146.a.a	ENSGT00940000158600	ENSGT00950000182866.D.d.a.c.b.a.a.c	ENSGT00940000164836	ENSGT01070000253760.b.b.a.a.c.b	ENSGT00940000178511	ENSGT00390000005508.a.b	ENSGT01100000263533.b.b.b.a.b.a.b	ENSGT00530000063540.b
Amphiprion	ANCESTRAL SPECIES	63	ENSGT00390000011669	ENSGT01030000234868	ENSGT00790000123099	ENSGT00950000182835.d.b	ENSGT00390000007725.A.a	ENSGT00940000155840.B	ENSGT00940000156858	ENSGT00390000011239.j	ENSGT00940000155529.B	ENSGT00390000004094	ENSGT01030000234550.a.a.d.a.b	ENSGT00940000166253	ENSGT00940000160423.b #29	ENSGT00940000153544.b #28	ENSGT00390000014557 #25	ENSGT00390000018003.b #22	ENSGT00390000008702 #24	ENSGT00940000159389	ENSGT00390000016138	ENSGT00950000183205.b.a.b.a.b	ENSGT00940000155486	ENSGT00940000158917.f	ENSGT00950000183146.a.a	ENSGT00940000158600	ENSGT00950000182866.D.d.a.c.b.a.a.c.a.a.a.a	ENSGT00950000182866.D.d.a.c.b.a.a.c.b	ENSGT00940000164836.p	ENSGT00950000182866.D.d.a.c.b.a.a.c.a.a.b	ENSGT00940000164836.o	ENSGT01070000253760.b.b.a.a.c.b	ENSGT01100000263533.b.b.b.a.b.a.b
Clown anemonefish	MODERN SPECIES	1735						ENSAOCG00000019825	ENSAOCG00000001448	pik3cg (ENSAOCG00000002034)	HBP1 (ENSAOCG00000001429)	ENSAOCG00000019646	coa6 (ENSAOCG00000019622)	slc13a4 (ENSAOCG00000019580)	zgc:162331 (ENSAOCG00000019534)	BMAL2 (ENSAOCG00000019488) #29	stk38l (ENSAOCG00000019403) #28	fgfr1op2 (ENSAOCG00000019332) #22	med21 (ENSAOCG00000001391) #25	TM7SF3 (ENSAOCG00000001384) #24
Orange clownfish	MODERN SPECIES	13	ENSAPEG00000022708	ntf3 (ENSAPEG00000022692)	ano2b (ENSAPEG00000022673)	ENSAPEG00000022656	pik3cg (ENSAPEG00000022612)	HBP1 (ENSAPEG00000022589)	ENSAPEG00000022572	ENSAPEG00000022554	ENSAPEG00000022435	coa6 (ENSAPEG00000022355)	slc13a4 (ENSAPEG00000022271)	zgc:162331 (ENSAPEG00000022255)	BMAL2 (ENSAPEG00000022204) #29	stk38l (ENSAPEG00000022175) #28	med21 (ENSAPEG00000022165) #25	fgfr1op2 (ENSAPEG00000022152) #22	TM7SF3 (ENSAPEG00000022137) #24	ENSAPEG00000022114	gas2l3 (ENSAPEG00000022059)	arid2 (ENSAPEG00000021970)	ENSAPEG00000021938	slc38a2 (ENSAPEG00000021879)	slc38a4 (ENSAPEG00000021848)	ENSAPEG00000021839	ENSAPEG00000021805	ANO4 (ENSAPEG00000021738)	ENSAPEG00000021715	NXPE3 (ENSAPEG00000021701)	ENSAPEG00000021673	ENSAPEG00000021639	NXPE3 (ENSAPEG00000021624)
Spiny chromis	MODERN SPECIES	1376													BMAL2 (ENSAPOG00000006715) #29	stk38l (ENSAPOG00000001084) #28	med21 (ENSAPOG00000006813) #25	fgfr1op2 (ENSAPOG00000006839) #22	TM7SF3 (ENSAPOG00000006849) #24	ENSAPOG00000006899	gas2l3 (ENSAPOG00000006912)
Bicolor damselfish	MODERN SPECIES	582												zgc:162331 (ENSSPAG00000007088)	BMAL2 (ENSSPAG00000007058) #29	stk38l (ENSSPAG00000007023) #28	med21 (ENSSPAG00000007009) #25	fgfr1op2 (ENSSPAG00000006983) #22	TM7SF3 (ENSSPAG00000006937) #24	gas2l3 (ENSSPAG00000006910)	arid2 (ENSSPAG00000006874)	ENSSPAG00000006835	slc38a2 (ENSSPAG00000006802)	slc38a4 (ENSSPAG00000006746)	ENSSPAG00000006724	ANO4 (ENSSPAG00000006679)
Cichlidae	ANCESTRAL SPECIES	61	ENSGT00390000011669	ENSGT01030000234868	ENSGT00790000123099	ENSGT00950000182835.d.b	ENSGT00390000007725.A.a	ENSGT00940000155840.B	ENSGT00940000156858	ENSGT00390000011239.j	ENSGT00940000155529.B	ENSGT00390000004094	ENSGT01030000234550.a.a.d.a.b	ENSGT00940000166253	ENSGT00940000160423.b #29	ENSGT00940000153544.b #28	ENSGT00390000014557 #25	ENSGT00390000018003.b #22	ENSGT00390000008702 #24	ENSGT00940000159389	ENSGT00390000016138	ENSGT00950000183205.b.a.b.a.b	ENSGT00940000155486	ENSGT00940000158917	ENSGT00950000183146.a.a	ENSGT00940000158600	ENSGT00950000182866.D.d.a.c.b.a.a.b.a
Pseudocrenilabrinae	ANCESTRAL SPECIES	23	ENSGT00390000011669	ENSGT01030000234868	ENSGT00790000123099	ENSGT00950000182835.d.b	ENSGT00390000007725.A.a	ENSGT00940000155840.B	ENSGT00940000156858	ENSGT00390000011239.j	ENSGT00940000155529.B	ENSGT00390000004094	ENSGT01030000234550.a.a.d.a.b	ENSGT00940000166253	ENSGT00940000160423.b #29	ENSGT00940000153544.b #28	ENSGT00390000014557 #25	ENSGT00390000018003.b #22	ENSGT00390000008702 #24	ENSGT00940000159389	ENSGT00390000016138	ENSGT00950000183205.b.a.b.a.b	ENSGT00940000155486	ENSGT00940000158917	ENSGT00950000183146.a.a	ENSGT00940000158600	ENSGT00950000182866.D.d.a.c.b.a.a.b.a	ENSGT00940000163701.b.a.a.a.b.d	ENSGT00390000007658	ENSGT00530000063790.a.a	ENSGT00730000111209	ENSGT00940000158755	ENSGT00940000154568
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	10	ENSGT00390000011669	ENSGT01030000234868	ENSGT00790000123099	ENSGT00950000182835.d.b	ENSGT00390000007725.A.a	ENSGT00940000155840.B	ENSGT00940000156858	ENSGT00390000011239.j	ENSGT00940000155529.B	ENSGT00390000004094	ENSGT01030000234550.a.a.d.a.b	ENSGT00940000166253	ENSGT00940000160423.b #29	ENSGT00940000153544.b #28	ENSGT00390000014557 #25	ENSGT00390000018003.b #22	ENSGT00390000008702 #24	ENSGT00940000159389	ENSGT00390000016138	ENSGT00950000183205.b.a.b.a.b	ENSGT00940000155486	ENSGT00940000158917	ENSGT00950000183146.a.a	ENSGT00940000158600	ENSGT00950000182866.D.d.a.c.b.a.a.b.a	ENSGT00940000177278.b	ENSGT00940000163701.b.a.a.a.b.d	ENSGT00390000007658	ENSGT00530000063790.a.a	ENSGT00730000111209	ENSGT00940000158755
Haplochromini	ANCESTRAL SPECIES	9	ENSGT00390000011669	ENSGT01030000234868	ENSGT00790000123099	ENSGT00950000182835.d.b	ENSGT00390000007725.A.a	ENSGT00940000155840.B	ENSGT00940000156858	ENSGT00390000011239.j	ENSGT00940000155529.B	ENSGT00390000004094	ENSGT01030000234550.a.a.d.a.b	ENSGT00940000166253	ENSGT00940000160423.b #29	ENSGT00940000153544.b #28	ENSGT00390000014557 #25	ENSGT00390000018003.b #22	ENSGT00390000008702 #24	ENSGT00940000159389	ENSGT00390000016138	ENSGT00950000183205.b.a.b.a.b	ENSGT00940000155486	ENSGT00940000158917	ENSGT00950000183146.a.a	ENSGT00940000158600	ENSGT00950000182866.D.d.a.c.b.a.a.b.a	ENSGT00940000177278.b	ENSGT00940000163701.b.a.a.a.b.d	ENSGT00390000007658	ENSGT00530000063790.a.a	ENSGT00730000111209	ENSGT00940000158755
Burton s mouthbrooder	MODERN SPECIES	627										coa6 (ENSHBUG00000011393)	slc13a4 (ENSHBUG00000011465)	zgc:162331 (ENSHBUG00000011481)	BMAL2 (ENSHBUG00000011501) #29	stk38l (ENSHBUG00000011539) #28	med21 (ENSHBUG00000011560) #25	fgfr1op2 (ENSHBUG00000011584) #22	TM7SF3 (ENSHBUG00000011594) #24	gas2l3 (ENSHBUG00000011600)	arid2 (ENSHBUG00000011615)	ENSHBUG00000011628	slc38a2 (ENSHBUG00000011731)	slc38a4 (ENSHBUG00000011860)	ENSHBUG00000011884	ANO4 (ENSHBUG00000000330)	NXPE3 (ENSHBUG00000011938)
Haplochromini_A	ANCESTRAL SPECIES	9	ENSGT01030000234868	ENSGT00790000123099	ENSGT00950000182835.d.b	ENSGT00390000007725.A.a	ENSGT00940000180345	ENSGT00940000155840.B	ENSGT00940000156858	ENSGT00390000011239.j	ENSGT00940000155529.B	ENSGT00390000004094	ENSGT01030000234550.a.a.d.a.b	ENSGT00940000166253	ENSGT00940000160423.b #29	ENSGT00940000153544.b #28	ENSGT00390000014557 #25	ENSGT00390000018003.b #22	ENSGT00390000008702 #24	ENSGT00940000159389	ENSGT00390000016138	ENSGT00950000183205.b.a.b.a.b	ENSGT00940000155486	ENSGT00940000158917	ENSGT00950000183146.a.a	ENSGT00940000158600	ENSGT00950000182866.D.d.a.c.b.a.a.b.a	ENSGT00900000141362.a.b.c.b	ENSGT00940000177278.b	ENSGT00940000163701.b.a.a.a.b.d	ENSGT00390000007658	ENSGT00530000063790.a.a	ENSGT00730000111209
Haplochromini_B	ANCESTRAL SPECIES	32	ENSGT01030000234868	ENSGT00790000123099	ENSGT00950000182835.d.b	ENSGT00390000007725.A.a	ENSGT00940000180345	ENSGT00940000155840.B	ENSGT00940000156858	ENSGT00390000011239.j	ENSGT00940000155529.B	ENSGT00390000004094	ENSGT01030000234550.a.a.d.a.b	ENSGT00940000166253	ENSGT00940000160423.b #29	ENSGT00940000153544.b #28	ENSGT00390000014557 #25	ENSGT00390000018003.b #22	ENSGT00390000008702 #24	ENSGT00940000159389	ENSGT00390000016138	ENSGT00950000183205.b.a.b.a.b	ENSGT00940000155486	ENSGT00940000158917	ENSGT00950000183146.a.a	ENSGT00940000158600	ENSGT00950000182866.D.d.a.c.b.a.a.b.a	ENSGT00900000141362.a.b.c.b	ENSGT00940000177278.b	ENSGT00940000163701.b.a.a.a.b.d	ENSGT00390000007658	ENSGT00530000063790.a.a	ENSGT00730000111209
Eastern happy	DUPLICATION
Eastern happy	MODERN SPECIES	94												ENSACLG00000016266	BMAL2 (ENSACLG00000016219) #29	stk38l (ENSACLG00000016152) #28	med21 (ENSACLG00000016034) #25	fgfr1op2 (ENSACLG00000016006) #22	TM7SF3 (ENSACLG00000015981) #24
Eastern happy	MODERN SPECIES	8	pfkfb3 (ENSACLG00000003821)	ntf3 (ENSACLG00000003808)	ENSACLG00000003807	ENSACLG00000003789	ano2b (ENSACLG00000003747)	pik3cg (ENSACLG00000003623)	HBP1 (ENSACLG00000003606)	ENSACLG00000003598	ENSACLG00000003402	coa6 (ENSACLG00000003382)	slc13a4 (ENSACLG00000003198)	ENSACLG00000003159	BMAL2 (ENSACLG00000003135) #29	stk38l (ENSACLG00000003108) #28	med21 (ENSACLG00000003091) #25	fgfr1op2 (ENSACLG00000003074) #22	TM7SF3 (ENSACLG00000003053) #24	gas2l3 (ENSACLG00000003042)	arid2 (ENSACLG00000002996)	ENSACLG00000002985	slc38a2 (ENSACLG00000002877)	slc38a4 (ENSACLG00000002621)	ENSACLG00000002578	ANO4 (ENSACLG00000002503)	NXPE3 (ENSACLG00000002491)	ENSACLG00000002484	ccl25b (ENSACLG00000002474)	ENSACLG00000002469	ENSACLG00000002468	ccl25b (ENSACLG00000002259)	ENSACLG00000002234
Zebra mbuna	MODERN SPECIES	1099	ENSMZEG00005015191	rbm17 (ENSMZEG00005015179)	pfkfb3 (ENSMZEG00005015156)	ntf3 (ENSMZEG00005015143)	ENSMZEG00005015136	ano2b (ENSMZEG00005015108)	pik3cg (ENSMZEG00005015075)	HBP1 (ENSMZEG00005015065)	ENSMZEG00005015037	coa6 (ENSMZEG00005015021)	slc13a4 (ENSMZEG00005015009)	zgc:162331 (ENSMZEG00005015004)	BMAL2 (ENSMZEG00005014994) #29	stk38l (ENSMZEG00005014981) #28	med21 (ENSMZEG00005014971) #25	fgfr1op2 (ENSMZEG00005014955) #22	TM7SF3 (ENSMZEG00005014944) #24	gas2l3 (ENSMZEG00005014932)	arid2 (ENSMZEG00005014910)	ENSMZEG00005014878	slc38a2 (ENSMZEG00005014826)	slc38a4 (ENSMZEG00005014625)	AMIGO2 (ENSMZEG00005014613)	ANO4 (ENSMZEG00005014601)	NXPE3 (ENSMZEG00005014593)	ccl25b (ENSMZEG00005014587)	ENSMZEG00005014582	ENSMZEG00005014576	ENSMZEG00005014574	ENSMZEG00005014569	ENSMZEG00005014562
P. nyererei	MODERN SPECIES	425	rbm17 (ENSPNYG00000015274)	pfkfb3 (ENSPNYG00000015242)	ntf3 (ENSPNYG00000015225)	ENSPNYG00000015213	ano2b (ENSPNYG00000015160)	pik3cg (ENSPNYG00000015089)	HBP1 (ENSPNYG00000015063)	ENSPNYG00000015039	ENSPNYG00000015005	coa6 (ENSPNYG00000014994)	slc13a4 (ENSPNYG00000014890)	zgc:162331 (ENSPNYG00000014841)	BMAL2 (ENSPNYG00000014760) #29	stk38l (ENSPNYG00000014721) #28	med21 (ENSPNYG00000014699) #25	fgfr1op2 (ENSPNYG00000014678) #22	TM7SF3 (ENSPNYG00000014644) #24	gas2l3 (ENSPNYG00000014617)	arid2 (ENSPNYG00000014572)	ENSPNYG00000014553	slc38a2 (ENSPNYG00000014524)	slc38a4 (ENSPNYG00000014426)	AMIGO2 (ENSPNYG00000014386)	ANO4 (ENSPNYG00000014338)	NXPE3 (ENSPNYG00000014322)	ccl25b (ENSPNYG00000014303)	TTC22 (ENSPNYG00000014284)	lurap1 (ENSPNYG00000014267)	lepr (ENSPNYG00000014229)	DNAJC6 (ENSPNYG00000014192)	ak4 (ENSPNYG00000014169)
Lyretail cichlid	MODERN SPECIES	452	rbm17 (ENSNBRG00000018148)	pfkfb3 (ENSNBRG00000018116)	ntf3 (ENSNBRG00000018088)	ENSNBRG00000018062	ano2b (ENSNBRG00000018025)	pik3cg (ENSNBRG00000017863)	HBP1 (ENSNBRG00000017820)	ENSNBRG00000017799	ENSNBRG00000017771	coa6 (ENSNBRG00000017744)	ENSNBRG00000017727	zgc:162331 (ENSNBRG00000017703)	BMAL2 (ENSNBRG00000017680) #29	stk38l (ENSNBRG00000017648) #28	med21 (ENSNBRG00000017627) #25	fgfr1op2 (ENSNBRG00000017612) #22	TM7SF3 (ENSNBRG00000017579) #24	gas2l3 (ENSNBRG00000017561)	arid2 (ENSNBRG00000017384)	ENSNBRG00000017361	slc38a2 (ENSNBRG00000017344)	slc38a4 (ENSNBRG00000017301)	ENSNBRG00000017277	ANO4 (ENSNBRG00000017237)	NXPE3 (ENSNBRG00000017221)
Nile tilapia	MODERN SPECIES	8	rbm17 (ENSONIG00000011838)	pfkfb3 (ENSONIG00000011845)	ENSONIG00000035778	ntf3 (ENSONIG00000029615)	ano2b (ENSONIG00000011849)	pik3cg (ENSONIG00000011855)	ENSONIG00000036033	HBP1 (ENSONIG00000011868)	ENSONIG00000011873	coa6 (ENSONIG00000041513)	slc13a4 (ENSONIG00000011885)	zgc:162331 (ENSONIG00000011886)	BMAL2 (ENSONIG00000011887) #29	stk38l (ENSONIG00000011890) #28	med21 (ENSONIG00000035522) #25	fgfr1op2 (ENSONIG00000011894) #22	TM7SF3 (ENSONIG00000011896) #24	gas2l3 (ENSONIG00000011899)	arid2 (ENSONIG00000011901)	ENSONIG00000011907	slc38a4 (ENSONIG00000011911)	AMIGO2 (ENSONIG00000037740)	ANO4 (ENSONIG00000011913)	NXPE3 (ENSONIG00000014091)	ENSONIG00000031592	ENSONIG00000009979	ccl25b (ENSONIG00000040787)	ENSONIG00000009981	ENSONIG00000011921	ENSONIG00000011923	lurap1 (ENSONIG00000037764)
Midas cichlid	MODERN SPECIES	1220								HBP1 (ENSACIG00000019093)	ENSACIG00000019112	coa6 (ENSACIG00000019148)	slc13a4 (ENSACIG00000019181)	zgc:162331 (ENSACIG00000019255)	BMAL2 (ENSACIG00000019264) #29	stk38l (ENSACIG00000019280) #28	med21 (ENSACIG00000019296) #25	fgfr1op2 (ENSACIG00000019298) #22	TM7SF3 (ENSACIG00000019307) #24	gas2l3 (ENSACIG00000019340)	arid2 (ENSACIG00000019419)	ENSACIG00000019737	slc38a2 (ENSACIG00000019848)	slc38a4 (ENSACIG00000019882)
Atherinomorphae	ANCESTRAL SPECIES	21	ENSGT00390000011669	ENSGT01030000234868	ENSGT00790000123099	ENSGT00950000182835.d.b	ENSGT00390000007725.A.a	ENSGT00940000155840.B	ENSGT00940000156858	ENSGT00390000011239.j	ENSGT00940000155529.B	ENSGT00390000004094	ENSGT01030000234550.a.a.d.a.b	ENSGT00940000166253	ENSGT00940000160423.b #29	ENSGT00940000153544.b #28	ENSGT00390000014557 #25	ENSGT00390000018003.b #22	ENSGT00390000008702 #24	ENSGT00940000159389	ENSGT00390000016138	ENSGT00950000183205.b.a.b.a.b	ENSGT00940000155486	ENSGT00940000158917	ENSGT00950000183146.a.a	ENSGT00940000158600	ENSGT00950000182866.D.d.a.c.b.a.a	ENSGT00940000164836.l	ENSGT00940000164836.k	ENSGT01070000253760.b.b.a.a.c.b	ENSGT00390000005508.a.b	ENSGT01100000263533.b.b.b.a.b.a.b	ENSGT00530000063540.b
Cyprinodontiformes	ANCESTRAL SPECIES	19	ENSGT00390000011669	ENSGT00970000193629	ENSGT00790000123099	ENSGT00950000182835.d.b	ENSGT00390000007725.A.a	ENSGT00940000155840.B	ENSGT00940000156858	ENSGT00390000011239.j	ENSGT00940000155529.B	ENSGT00390000004094	ENSGT01030000234550.a.a.d.a.b	ENSGT00940000166253	ENSGT00940000160423.b #29	ENSGT00940000153544.b #28	ENSGT00390000014557 #25	ENSGT00390000018003.b #22	ENSGT00390000008702 #24	ENSGT00940000159389	ENSGT00390000016138	ENSGT00950000183205.b.a.b.a.b	ENSGT00940000155486	ENSGT00940000158917	ENSGT00950000183146.a.a	ENSGT00940000158600	ENSGT00950000182866.D.d.a.c.b.a.a	ENSGT00940000164836.l	ENSGT00940000164836.k	ENSGT01070000253760.b.b.a.a.c.b	ENSGT00390000005508.a.b	ENSGT01100000263533.b.b.b.a.b.a.b	ENSGT00530000063540.b
Aplocheiloidei	ANCESTRAL SPECIES	14	ENSGT00390000011669	ENSGT00970000193629	ENSGT00790000123099	ENSGT00950000182835.d.b	ENSGT00390000007725.A.a	ENSGT00940000155840.B	ENSGT00940000156858	ENSGT00390000011239.j	ENSGT00940000155529.B	ENSGT00390000004094	ENSGT01030000234550.a.a.d.a.b	ENSGT00940000166253	ENSGT00940000160423.b #29	ENSGT00940000153544.b #28	ENSGT00390000014557 #25	ENSGT00390000018003.b #22	ENSGT00390000008702 #24	ENSGT00940000159389	ENSGT00390000016138	ENSGT00950000183205.b.a.b.a.b	ENSGT00940000155486	ENSGT00940000158917	ENSGT00950000183146.a.a	ENSGT00940000158600	ENSGT00950000182866.D.d.a.c.b.a.a	ENSGT00940000164836.l	ENSGT00940000164836.k
Turquoise killifish	MODERN SPECIES	1610	pfkfb3 (ENSNFUG00015021060)	ENSNFUG00015021192	ntf3 (ENSNFUG00015021195)	ENSNFUG00015021198	ano2b (ENSNFUG00015021223)	ENSNFUG00015021608	PIK3CG (ENSNFUG00015021624)	HBP1 (ENSNFUG00015021659)	PTPRZ1B (ENSNFUG00015021707)	ENSNFUG00015022448	coa6 (ENSNFUG00015022449)	SLC13A4 (ENSNFUG00015022456)	Nfu_g_1_011670 (ENSNFUG00015022467)	BMAL2 (ENSNFUG00015022471) #29	stk38l (ENSNFUG00015022481) #28	FGFR1OP2 (ENSNFUG00015000049) #22	TM7SF3 (ENSNFUG00015000050) #24	GAS2L3 (ENSNFUG00015000052)	ARID2 (ENSNFUG00015000054)	ENSNFUG00015000058	ENSNFUG00015000063	slc38a2 (ENSNFUG00015000127)	slc38a4 (ENSNFUG00015000352)	AMIGO2 (ENSNFUG00015000544)	ANO4 (ENSNFUG00015000600)	NXPE3 (ENSNFUG00015000758)	ENSNFUG00015000763	ENSNFUG00015000786	SLC26A5 (ENSNFUG00015000843)	psmc2 (ENSNFUG00015001194)	dnajc2 (ENSNFUG00015001233)
Mangrove rivulus	MODERN SPECIES	156												zgc:162331 (ENSKMAG00000000342)	ENSKMAG00000000295 #29	stk38l (ENSKMAG00000000273) #28	med21 (ENSKMAG00000000237) #25	fgfr1op2 (ENSKMAG00000000190) #22	TM7SF3 (ENSKMAG00000000173) #24	arid2 (ENSKMAG00000021375)	ENSKMAG00000021359	slc38a2 (ENSKMAG00000021340)	slc38a4 (ENSKMAG00000021317)	ENSKMAG00000021299	osgep (ENSKMAG00000021284)	ANO4 (ENSKMAG00000021213)	ENSKMAG00000021187	ENSKMAG00000021180	apex1 (ENSKMAG00000021171)	osgep (ENSKMAG00000021157)	si:ch211-214j24.10 (ENSKMAG00000021149)	ENSKMAG00000021134	ENSKMAG00000021124
Cyprinodontoidei	ANCESTRAL SPECIES	59	ENSGT00940000154045.a	ENSGT00970000193629.a	ENSGT00790000123099	ENSGT00950000182835.d.b	ENSGT00390000007725.A.a	ENSGT00940000155840.B	ENSGT00940000156858	ENSGT00390000011239.j	ENSGT00940000155529.B	ENSGT00390000004094	ENSGT01030000234550.a.a.d.a.b	ENSGT00940000166253	ENSGT00940000160423.b #29	ENSGT00940000153544.b #28	ENSGT00390000014557 #25	ENSGT00390000018003.b #22	ENSGT00390000008702 #24	ENSGT00940000159389	ENSGT00390000016138	ENSGT00950000183205.b.a.b.a.b	ENSGT00940000155486	ENSGT00940000158917	ENSGT00950000183146.a.a	ENSGT00940000158600	ENSGT00950000182866.D.d.a.c.b.a.a.e.b
NAME_4	ANCESTRAL SPECIES	224					ENSGT00390000007725.A.a	ENSGT00940000155840.B	ENSGT00940000156858	ENSGT00390000011239.j	ENSGT00940000155529.B	ENSGT00390000004094	ENSGT01030000234550.a.a.d.a.b	ENSGT00940000166253	ENSGT00940000160423.b #29	ENSGT00940000153544.b #28	ENSGT00390000014557 #25	ENSGT00390000018003.b #22	ENSGT00390000008702 #24	ENSGT00940000159389	ENSGT00390000016138	ENSGT00950000183205.b.a.b.a.b	ENSGT00940000155486	ENSGT00940000158917	ENSGT00950000183146.a.a	ENSGT00940000158600	ENSGT00950000182866.D.d.a.c.b.a.a.e.b
Mummichog	MODERN SPECIES	446												BMAL2 (ENSFHEG00000014324) #29	stk38l (ENSFHEG00000014359) #28	ENSFHEG00000014389	med21 (ENSFHEG00000014409) #25	fgfr1op2 (ENSFHEG00000014424) #22	TM7SF3 (ENSFHEG00000014434) #24	gas2l3 (ENSFHEG00000014448)	arid2 (ENSFHEG00000014576)	ENSFHEG00000014599	ENSFHEG00000014657	ENSFHEG00000014671	slc38a2 (ENSFHEG00000014685)	slc38a4 (ENSFHEG00000014709)
Sheepshead minnow	MODERN SPECIES	284			ntf3 (ENSCVAG00000008650)	ENSCVAG00000008646	ENSCVAG00000008627	pik3cg (ENSCVAG00000008593)	HBP1 (ENSCVAG00000008501)	ENSCVAG00000008489	ENSCVAG00000008464	coa6 (ENSCVAG00000008426)	slc13a4 (ENSCVAG00000008415)	zgc:162331 (ENSCVAG00000008299)	BMAL2 (ENSCVAG00000008294) #29	stk38l (ENSCVAG00000008285) #28	med21 (ENSCVAG00000008236) #25	fgfr1op2 (ENSCVAG00000008216) #22	TM7SF3 (ENSCVAG00000008189) #24	gas2l3 (ENSCVAG00000008174)	ENSCVAG00000008161	phlda1 (ENSCVAG00000008139)	nap1l1 (ENSCVAG00000008122)	ENSCVAG00000008088	OSBPL8 (ENSCVAG00000008079)	zdhhc17 (ENSCVAG00000008052)	csrp2 (ENSCVAG00000008039)	e2f7 (ENSCVAG00000008019)	ENSCVAG00000007982	ENSCVAG00000007199	ENSCVAG00000007181	ENSCVAG00000007163	ENSCVAG00000000638
Poeciliinae	ANCESTRAL SPECIES	19	ENSGT00940000154045.a	ENSGT00970000193629.a	ENSGT00790000123099	ENSGT00950000182835.d.b	ENSGT00390000007725.A.a	ENSGT00940000155840.B	ENSGT00940000156858	ENSGT00390000011239.j	ENSGT00940000155529.B	ENSGT00390000004094	ENSGT01030000234550.a.a.d.a.b	ENSGT00940000166253	ENSGT00940000160423.b #29	ENSGT00940000153544.b #28	ENSGT00390000014557 #25	ENSGT00390000018003.b #22	ENSGT00390000008702 #24	ENSGT00940000159389	ENSGT00390000016138	ENSGT00950000183205.b.a.b.a.b	ENSGT00940000155486.l.a.b	ENSGT00940000155486.l.b.b	ENSGT00940000155486.l.b.a	ENSGT00940000158917	ENSGT00950000183146.a.a	ENSGT00940000158600	ENSGT00950000182866.D.d.a.c.b.a.a.e.b	ENSGT00950000182866.D.d.a.c.b.a.a.f	ENSGT00940000164836.l.a	ENSGT00940000164836.l.b	ENSGT00940000164836.k
Poecilia	ANCESTRAL SPECIES	47	ENSGT00940000154045.a	ENSGT00970000193629.a	ENSGT00790000123099	ENSGT00950000182835.d.b	ENSGT00390000007725.A.a	ENSGT00940000155840.B	ENSGT00940000156858	ENSGT00390000011239.j	ENSGT00940000155529.B	ENSGT00390000004094	ENSGT01030000234550.a.a.d.a.b	ENSGT00940000166253	ENSGT00940000160423.b #29	ENSGT00940000153544.b #28	ENSGT00390000014557 #25	ENSGT00390000018003.b #22	ENSGT00390000008702 #24	ENSGT00940000159389	ENSGT00390000016138	ENSGT00950000183205.b.a.b.a.b	ENSGT00940000155486.l.a.b	ENSGT00940000155486.l.b.b	ENSGT00940000155486.l.b.a	ENSGT00940000158917	ENSGT00950000183146.a.a	ENSGT00940000158600	ENSGT00950000182866.D.d.a.c.b.a.a.e.b	ENSGT00950000182866.D.d.a.c.b.a.a.e.a.b.a.a	ENSGT00950000182866.D.d.a.c.b.a.a.e.a.b.b.b	ENSGT00950000182866.D.d.a.c.b.a.a.e.a.a.a	ENSGT00950000182866.D.d.a.c.b.a.a.e.a.b.b.a
NAME_6	ANCESTRAL SPECIES	84	ENSGT00940000154045.a	ENSGT00970000193629.a	ENSGT00790000123099	ENSGT00950000182835.d.b	ENSGT00390000007725.A.a	ENSGT00940000155840.B	ENSGT00940000156858	ENSGT00390000011239.j	ENSGT00940000155529.B	ENSGT00390000004094	ENSGT01030000234550.a.a.d.a.b	ENSGT00940000166253	ENSGT00940000160423.b #29	ENSGT00940000153544.b #28	ENSGT00390000014557 #25	ENSGT00390000018003.b #22	ENSGT00390000008702 #24	ENSGT00940000159389	ENSGT00390000016138	ENSGT00950000183205.b.a.b.a.b	ENSGT00940000155486.l.a.a	ENSGT00940000155486.l.b.a.b	ENSGT00940000155486.l.b.b	ENSGT00940000155486.l.b.a.a.a	ENSGT00940000158917	ENSGT00950000183146.a.a	ENSGT00940000158600	ENSGT00950000182866.D.d.a.c.b.a.a.e.b	ENSGT00950000182866.D.d.a.c.b.a.a.e.a.b.a.a.c	ENSGT00950000182866.D.d.a.c.b.a.a.e.a.b.b.b	ENSGT00950000182866.D.d.a.c.b.a.a.e.a.b.a.a.d
Amazon molly	MODERN SPECIES	534	rbm17 (ENSPFOG00000013271)	pfkfb3 (ENSPFOG00000013115)	ENSPFOG00000023053	ntf3 (ENSPFOG00000013104)	ano2b (ENSPFOG00000012602)	pik3cg (ENSPFOG00000012367)	HBP1 (ENSPFOG00000012271)	ENSPFOG00000012104	coa6 (ENSPFOG00000012095)	slc13a4 (ENSPFOG00000012014)	zgc:162331 (ENSPFOG00000012000)	ENSPFOG00000024504	BMAL2 (ENSPFOG00000011809) #29	stk38l (ENSPFOG00000011622) #28	med21 (ENSPFOG00000011604) #25	fgfr1op2 (ENSPFOG00000011571) #22	TM7SF3 (ENSPFOG00000011451) #24	gas2l3 (ENSPFOG00000011399)	arid2 (ENSPFOG00000011270)	ENSPFOG00000011245	slc38a2 (ENSPFOG00000023397)	slc38a2 (ENSPFOG00000022365)	slc38a2 (ENSPFOG00000024186)	slc38a2 (ENSPFOG00000010783)
Sailfin molly	MODERN SPECIES	186				ntf3 (ENSPLAG00000012505)	ano2b (ENSPLAG00000012561)	pik3cg (ENSPLAG00000012648)	ENSPLAG00000012669	ENSPLAG00000012681	ENSPLAG00000012709	coa6 (ENSPLAG00000012723)	slc13a4 (ENSPLAG00000012732)	zgc:162331 (ENSPLAG00000012742)	BMAL2 (ENSPLAG00000013345) #29	stk38l (ENSPLAG00000013404) #28	med21 (ENSPLAG00000013420) #25	fgfr1op2 (ENSPLAG00000013432) #22	TM7SF3 (ENSPLAG00000013443) #24	gas2l3 (ENSPLAG00000013455)	arid2 (ENSPLAG00000013482)	ENSPLAG00000013570	ENSPLAG00000013588	slc38a2 (ENSPLAG00000013621)
Guppy	MODERN SPECIES	454	ENSPREG00000015622	rbm17 (ENSPREG00000015589)	pfkfb3 (ENSPREG00000015508)	ENSPREG00000015466	ntf3 (ENSPREG00000015457)	ano2b (ENSPREG00000015361)	pik3cg (ENSPREG00000015272)	HBP1 (ENSPREG00000015242)	ENSPREG00000015185	coa6 (ENSPREG00000015160)	slc13a4 (ENSPREG00000015134)	zgc:162331 (ENSPREG00000015122)	BMAL2 (ENSPREG00000015103) #29	stk38l (ENSPREG00000015077) #28	med21 (ENSPREG00000015064) #25	fgfr1op2 (ENSPREG00000015055) #22	TM7SF3 (ENSPREG00000015032) #24	gas2l3 (ENSPREG00000015012)	arid2 (ENSPREG00000014960)	ENSPREG00000014901	slc38a2 (ENSPREG00000014855)	slc38a2 (ENSPREG00000014808)	slc38a2 (ENSPREG00000014787)	slc38a4 (ENSPREG00000014746)	ENSPREG00000014739	ANO4 (ENSPREG00000014703)	ENSPREG00000014687	NXPE3 (ENSPREG00000014669)	ENSPREG00000014641	NXPE3 (ENSPREG00000014596)	NXPE3 (ENSPREG00000014579)
Platyfish	MODERN SPECIES	8	ENSXMAG00000024638	rbm17 (ENSXMAG00000008674)	pfkfb3 (ENSXMAG00000008689)	ENSXMAG00000026616	ntf3 (ENSXMAG00000028585)	ano2b (ENSXMAG00000008729)	pik3cg (ENSXMAG00000008792)	HBP1 (ENSXMAG00000007586)	ENSXMAG00000008823	coa6 (ENSXMAG00000008857)	slc13a4 (ENSXMAG00000008858)	zgc:162331 (ENSXMAG00000024273)	BMAL2 (ENSXMAG00000008892) #29	stk38l (ENSXMAG00000025251) #28	med21 (ENSXMAG00000027464) #25	fgfr1op2 (ENSXMAG00000008947) #22	TM7SF3 (ENSXMAG00000008953) #24	gas2l3 (ENSXMAG00000008963)	arid2 (ENSXMAG00000006636)	ENSXMAG00000021822	ENSXMAG00000027633	slc38a2 (ENSXMAG00000026557)	slc38a2 (ENSXMAG00000020966)	ENSXMAG00000024232	slc38a2 (ENSXMAG00000024283)	slc38a2 (ENSXMAG00000024689)	slc38a2 (ENSXMAG00000027686)	slc38a2 (ENSXMAG00000000485)	slc38a2 (ENSXMAG00000028934)	slc38a4 (ENSXMAG00000006133)	ENSXMAG00000028370
Oryzias	ANCESTRAL SPECIES	20	ENSGT00390000011669	ENSGT01030000234868	ENSGT00790000123099	ENSGT00950000182835.d.b	ENSGT00390000007725.A.a	ENSGT00940000155840.B	ENSGT00940000156858	ENSGT00390000011239.j	ENSGT00940000155529.B	ENSGT00390000004094	ENSGT01030000234550.a.a.d.a.b	ENSGT00940000166253	ENSGT00940000160423.b #29	ENSGT00940000153544.b #28	ENSGT00390000014557 #25	ENSGT00390000018003.b #22	ENSGT00390000008702 #24	ENSGT00940000159389	ENSGT00390000016138.w	ENSGT00950000183205.b.a.b.a.b	ENSGT00940000155486	ENSGT00940000158917	ENSGT00950000183146.a.a	ENSGT00940000158600	ENSGT00950000182866.D.d.a.c.b.a.a	ENSGT00390000011401	ENSGT00940000156154	ENSGT00940000158497	ENSGT00940000154471.a.b.a.b.u.b	ENSGT00940000155197	ENSGT00940000154098.a.f
Oryzias_a	ANCESTRAL SPECIES	53	ENSGT00390000011669	ENSGT01030000234868	ENSGT00790000123099	ENSGT00950000182835.d.b	ENSGT00390000007725.A.a	ENSGT00940000155840.B	ENSGT00940000156858	ENSGT00390000011239.j	ENSGT00940000155529.B	ENSGT00390000004094	ENSGT01030000234550.a.a.d.a.b	ENSGT00940000166253	ENSGT00940000160423.b #29	ENSGT00940000153544.b #28	ENSGT00390000014557 #25	ENSGT00390000018003.b #22	ENSGT00390000008702 #24	ENSGT00940000159389	ENSGT00390000016138.w	ENSGT00950000183205.b.a.b.a.b	ENSGT00940000155486	ENSGT00940000158917	ENSGT00950000183146.a.a	ENSGT00940000158600	ENSGT00950000182866.D.d.a.c.b.a.a	ENSGT00390000011401	ENSGT00940000156154	ENSGT00940000158497	ENSGT00940000154471.a.b.a.b.u.b	ENSGT00940000155197	ENSGT00940000154098.a.f
Chinese medaka	MODERN SPECIES	227							pik3cg (ENSOSIG00000000525)	HBP1 (ENSOSIG00000000517)	ENSOSIG00000000274	coa6 (ENSOSIG00000000248)	slc13a4 (ENSOSIG00000000197)	zgc:162331 (ENSOSIG00000000155)	BMAL2 (ENSOSIG00000000131) #29	stk38l (ENSOSIG00000000101) #28	med21 (ENSOSIG00000000072) #25	fgfr1op2 (ENSOSIG00000000060) #22	TM7SF3 (ENSOSIG00000023499) #24	gas2l3 (ENSOSIG00000023493)	arid2 (ENSOSIG00000023484)	ENSOSIG00000023472	slc38a2 (ENSOSIG00000023465)	slc38a4 (ENSOSIG00000023436)	ENSOSIG00000023425	ANO4 (ENSOSIG00000023423)
Japanese Medaka HdrR	MODERN SPECIES	15	ENSORLG00000009367	rbm17 (ENSORLG00000028798)	pfkfb3 (ENSORLG00000009391)	ntf3 (ENSORLG00000023241)	ENSORLG00000009412	pik3cg (ENSORLG00000009458)	ENSORLG00000009474	ENSORLG00000024640	ENSORLG00000009516	coa6 (ENSORLG00000026792)	slc13a4 (ENSORLG00000025248)	zgc:162331 (ENSORLG00000029239)	BMAL2 (ENSORLG00000009536) #29	stk38l (ENSORLG00000009571) #28	med21 (ENSORLG00000009581) #25	fgfr1op2 (ENSORLG00000009602) #22	TM7SF3 (ENSORLG00000009613) #24	gas2l3 (ENSORLG00000009624)	arid2 (ENSORLG00000009649)	ENSORLG00000028222	slc38a2 (ENSORLG00000009787)	slc38a4 (ENSORLG00000028149)	ANO4 (ENSORLG00000022167)	ENSORLG00000009808	ENSORLG00000027436	ENSORLG00000009799	ENSORLG00000028212	mrps33 (ENSORLG00000023919)	braf (ENSORLG00000009843)	large1 (ENSORLG00000009895)	ENSORLG00000009922
Oryzias_b	ANCESTRAL SPECIES	99												ENSGT00940000166253	ENSGT00940000160423.b #29	ENSGT00940000153544.b #28	ENSGT00390000014557 #25	ENSGT00390000018003.b #22	ENSGT00390000008702 #24	ENSGT00940000159389	ENSGT00390000016138.w	ENSGT00950000183205.b.a.b.a.b	ENSGT00940000155486	ENSGT00940000158917	ENSGT00950000183146.a.a	ENSGT00940000158600	ENSGT00950000182866.D.d.a.c.b.a.a	ENSGT00390000011401	ENSGT00940000156154
Indian medaka	MODERN SPECIES	25	si:ch73-252i11.1 (ENSOMEG00000023360)	ENSOMEG00000023346	ENSOMEG00000023334	cdk17 (ENSOMEG00000023314)	ELK3 (ENSOMEG00000023277)	hcfc2 (ENSOMEG00000023260)	ENSOMEG00000023248	ENSOMEG00000023232	ENSOMEG00000023219	ENSOMEG00000023201	ENSOMEG00000023168	zgc:162331 (ENSOMEG00000023156)	BMAL2 (ENSOMEG00000023136) #29	stk38l (ENSOMEG00000023118) #28	med21 (ENSOMEG00000023088) #25	fgfr1op2 (ENSOMEG00000023082) #22	TM7SF3 (ENSOMEG00000023072) #24	gas2l3 (ENSOMEG00000023057)	arid2 (ENSOMEG00000023033)	ENSOMEG00000023006	ENSOMEG00000022988	slc38a2 (ENSOMEG00000022979)	slc38a4 (ENSOMEG00000022958)
Javanese ricefish	MODERN SPECIES	15	hspa14 (ENSOJAG00000022136)	ENSOJAG00000022131	ENSOJAG00000022124	ENSOJAG00000022117	ano2b (ENSOJAG00000021524)	ENSOJAG00000021494	ENSOJAG00000021481	fbxo18 (ENSOJAG00000021440)	ENSOJAG00000021432	rbm17 (ENSOJAG00000021422)	pfkfb3 (ENSOJAG00000020626)	ntf3 (ENSOJAG00000020584)	BMAL2 (ENSOJAG00000020544) #29	stk38l (ENSOJAG00000020521) #28	med21 (ENSOJAG00000020502) #25	fgfr1op2 (ENSOJAG00000020488) #22	TM7SF3 (ENSOJAG00000020446) #24	gas2l3 (ENSOJAG00000020349)	arid2 (ENSOJAG00000020285)	ENSOJAG00000020219	slc38a4 (ENSOJAG00000019017)	ENSOJAG00000018905	ANO4 (ENSOJAG00000018236)	NXPE3 (ENSOJAG00000018163)	NXPE3 (ENSOJAG00000018142)	mrps33 (ENSOJAG00000018112)	braf (ENSOJAG00000017950)	ENSOJAG00000017939	ENSOJAG00000017931	ssuh2rs1 (ENSOJAG00000017866)	ssuh2rs1 (ENSOJAG00000017839)
Percomorphaceae_C	ANCESTRAL SPECIES	22	ENSGT01030000234868	ENSGT00790000123099	ENSGT00950000182835.d.b	ENSGT00390000007725.A.a	ENSGT00940000179100	ENSGT00940000155840.B	ENSGT00940000156858	ENSGT00390000011239.j	ENSGT00940000155529.B	ENSGT00390000004094	ENSGT01030000234550.a.a.d.a.b	ENSGT00940000166253	ENSGT00940000160423.b #29	ENSGT00940000153544.b #28	ENSGT00390000014557 #25	ENSGT00390000018003.b #22	ENSGT00390000008702 #24	ENSGT00940000159389	ENSGT00390000016138	ENSGT00980000203435	ENSGT00950000183205.b.a.b.a.b	ENSGT00940000155486	ENSGT00940000158917	ENSGT00950000183146.a.a	ENSGT00940000158600	ENSGT00950000182866.D.d.a.c.b.a.a	ENSGT00940000164836	ENSGT01070000253760.b.b.a.a.c.b	ENSGT00940000178511	ENSGT00390000005508.a.b	ENSGT01100000263533.b.b.b.a.b.a.b
Percomorphaceae_D	ANCESTRAL SPECIES	22	ENSGT00390000011669	ENSGT01030000234868	ENSGT00790000123099	ENSGT00950000182835.d.b	ENSGT00390000007725.A.a	ENSGT00940000155840.B	ENSGT00940000156858	ENSGT00390000011239.j	ENSGT00940000155529.B	ENSGT00390000004094	ENSGT01030000234550.a.a.d.a.b	ENSGT00940000166253	ENSGT00940000160423.b #29	ENSGT00940000153544.b #28	ENSGT00390000014557 #25	ENSGT00390000018003.b #22	ENSGT00390000008702 #24	ENSGT00940000159389	ENSGT00390000016138	ENSGT00980000203435	ENSGT00950000183205.b.a.b.a.b	ENSGT00940000155486	ENSGT00940000158917	ENSGT00950000183146.a.a	ENSGT00940000158600	ENSGT00950000182866.D.d.a.c.b.a.a	ENSGT00940000164836	ENSGT01070000253760.b.b.a.a.c.b	ENSGT00940000178511	ENSGT00390000005508.a.b	ENSGT01100000263533.b.b.b.a.b.a.b
Anabantaria	ANCESTRAL SPECIES	21	ENSGT00390000011669	ENSGT01030000234868	ENSGT00790000123099	ENSGT00950000182835.d.b	ENSGT00390000007725.A.a	ENSGT00940000155840.B	ENSGT00940000156858	ENSGT00390000011239.j	ENSGT00940000155529.B	ENSGT00390000004094	ENSGT01030000234550.a.a.d.a.b	ENSGT00940000166253	ENSGT00940000160423.b #29	ENSGT00940000153544.b #28	ENSGT00390000014557 #25	ENSGT00390000018003.b #22	ENSGT00390000008702 #24	ENSGT00940000159389	ENSGT00390000016138	ENSGT00980000203435	ENSGT00950000183205.b.a.b.a.b	ENSGT00940000155486	ENSGT00940000158917	ENSGT00950000183146.a.a	ENSGT00940000158600	ENSGT00950000182866.D.d.a.c.b.a.a	ENSGT00940000164836	ENSGT01070000253760.b.b.a.a.c.b	ENSGT00940000162179.e.b.a.a.b	ENSGT00530000063540.b	ENSGT00940000153744.B
Zig-zag eel	MODERN SPECIES	15	ENSMAMG00000026224	ENSMAMG00000000387	PFKFB3 (ENSMAMG00000000339)	ENSMAMG00000000333	ENSMAMG00000023595	ENSMAMG00000023590	ENSMAMG00000023588	ENSMAMG00000023583	coa6 (ENSMAMG00000024671)	slc13a4 (ENSMAMG00000023580)	ENSMAMG00000023577	zgc:162331 (ENSMAMG00000023574)	BMAL2 (ENSMAMG00000023570) #29	STK38L (ENSMAMG00000023567) #28	MED21 (ENSMAMG00000027572) #25	ENSMAMG00000023565 #22	TM7SF3 (ENSMAMG00000023564) #24	ENSMAMG00000023562	ENSMAMG00000023558	ENSMAMG00000023556	ENSMAMG00000023548	ENSMAMG00000025115	ENSMAMG00000023541	ENSMAMG00000023537	ENSMAMG00000023532	ENSMAMG00000023528	ENSMAMG00000024929	ENSMAMG00000028093	ENSMAMG00000023524	apex1 (ENSMAMG00000025566)	OSGEP (ENSMAMG00000023520)
Anabantoidei	ANCESTRAL SPECIES	26	ENSGT00390000011669	ENSGT01030000234868	ENSGT00790000123099	ENSGT00950000182835.d.b	ENSGT00390000007725.A.a	ENSGT00940000155840.B	ENSGT00940000156858	ENSGT00390000011239.j	ENSGT00940000155529.B	ENSGT00390000004094	ENSGT01030000234550.a.a.d.a.b	ENSGT00940000166253	ENSGT00940000160423.b #29	ENSGT00940000153544.b #28	ENSGT00390000014557 #25	ENSGT00390000018003.b #22	ENSGT00390000008702 #24	ENSGT00940000159389	ENSGT00390000016138	ENSGT00980000203435	ENSGT00950000183205.b.a.b.a.b	ENSGT00940000155486	ENSGT00940000158917	ENSGT00950000183146.a.a	ENSGT00940000158600	ENSGT00950000182866.D.d.a.c.b.a.a	ENSGT00940000164836	ENSGT00390000005508.a.b	ENSGT00530000063540.b	ENSGT00940000153744.B	ENSGT00390000009992
Siamese fighting fish	MODERN SPECIES	20	cdk17 (ENSBSLG00000021327)	ELK3 (ENSBSLG00000021272)	hcfc2 (ENSBSLG00000021223)	CEP83 (ENSBSLG00000021131)	ENSBSLG00000020980	ano2b (ENSBSLG00000020333)	pik3cg (ENSBSLG00000020102)	ENSBSLG00000020031	ENSBSLG00000017252	coa6 (ENSBSLG00000017054)	slc13a4 (ENSBSLG00000016752)	zgc:162331 (ENSBSLG00000016579)	BMAL2 (ENSBSLG00000015567) #29	stk38l (ENSBSLG00000015530) #28	med21 (ENSBSLG00000015513) #25	fgfr1op2 (ENSBSLG00000015501) #22	TM7SF3 (ENSBSLG00000015299) #24	gas2l3 (ENSBSLG00000015240)	arid2 (ENSBSLG00000014732)	ENSBSLG00000014681	ENSBSLG00000014649	slc38a2 (ENSBSLG00000012707)	slc38a4 (ENSBSLG00000012424)	AMIGO2 (ENSBSLG00000012407)	ANO4 (ENSBSLG00000011771)	NXPE3 (ENSBSLG00000011349)	ENSBSLG00000011346	NXPE3 (ENSBSLG00000011330)	ENSBSLG00000011318	ENSBSLG00000011314	ENSBSLG00000011305
Climbing perch	MODERN SPECIES	14	FBH1 (ENSATEG00000004547)	ENSATEG00000004469	ENSATEG00000004406	PFKFB3 (ENSATEG00000004339)	ENSATEG00000004319	ENSATEG00000004091	ENSATEG00000003954	ENSATEG00000003902	ENSATEG00000003764	coa6 (ENSATEG00000029903)	slc13a4 (ENSATEG00000003643)	zgc:162331 (ENSATEG00000029048)	BMAL2 (ENSATEG00000003606) #29	STK38L (ENSATEG00000003551) #28	MED21 (ENSATEG00000003529) #25	ENSATEG00000003500 #22	TM7SF3 (ENSATEG00000003403) #24	ENSATEG00000027440	ENSATEG00000003354	ENSATEG00000025384	ENSATEG00000003341	SLC38A2 (ENSATEG00000003326)	ENSATEG00000027439	ENSATEG00000027246	ENSATEG00000003129	ENSATEG00000003044	ENSATEG00000027900	ENSATEG00000002897	ENSATEG00000029410	apex1 (ENSATEG00000028063)	ENSATEG00000002767
Carangaria	ANCESTRAL SPECIES	22	ENSGT00390000011669	ENSGT01030000234868	ENSGT00790000123099	ENSGT00950000182835.d.b	ENSGT00390000007725.A.a	ENSGT00940000155840.B	ENSGT00940000156858	ENSGT00390000011239.j	ENSGT00940000155529.B	ENSGT00390000004094	ENSGT01030000234550.a.a.d.a.b	ENSGT00940000166253	ENSGT00940000160423.b #29	ENSGT00940000153544.b #28	ENSGT00390000014557 #25	ENSGT00390000018003.b #22	ENSGT00390000008702 #24	ENSGT00940000159389	ENSGT00390000016138	ENSGT00950000183205.b.a.b.a.b	ENSGT00940000155486	ENSGT00940000158917	ENSGT00950000183146.a.a	ENSGT00940000158600	ENSGT00950000182866.D.d.a.c.b.a.a	ENSGT00940000164836	ENSGT01070000253760.b.b.a.a.c.b	ENSGT00940000178511	ENSGT00390000005508.a.b	ENSGT01100000263533.b.b.b.a.b.a.b	ENSGT00530000063540.b
Pleuronectoidei	ANCESTRAL SPECIES	37	ENSGT00390000011669	ENSGT01030000234868	ENSGT00790000123099	ENSGT00950000182835.d.b	ENSGT00390000007725.A.a	ENSGT00940000155840.B	ENSGT00940000156858	ENSGT00390000011239.j	ENSGT00940000155529.B	ENSGT00390000004094	ENSGT01030000234550.a.a.d.a.b	ENSGT00940000166253	ENSGT00940000160423.b #29	ENSGT00940000153544.b #28	ENSGT00390000014557 #25	ENSGT00390000018003.b #22	ENSGT00390000008702 #24	ENSGT00940000159389	ENSGT00390000016138	ENSGT00950000183205.b.a.b.a.b	ENSGT00940000155486	ENSGT00940000158917	ENSGT00950000183146.a.a	ENSGT00940000158600	ENSGT00940000164836	ENSGT01070000253760.b.b.a.a.c.b	ENSGT00940000178511	ENSGT00390000005508.a.b	ENSGT01100000263519.A.b.b.a.a.c	ENSGT00530000063540.b	ENSGT00940000153744.B
Tongue sole	MODERN SPECIES	18	ENSCSEG00000017603	ENSCSEG00000017564	ENSCSEG00000017547	ENSCSEG00000017539	si:ch211-214j24.10 (ENSCSEG00000017523)	osgep (ENSCSEG00000017510)	apex1 (ENSCSEG00000017499)	ENSCSEG00000017488	ANO4 (ENSCSEG00000017464)	coa6 (ENSCSEG00000017454)	slc13a4 (ENSCSEG00000017438)	zgc:162331 (ENSCSEG00000017428)	BMAL2 (ENSCSEG00000017417) #29	stk38l (ENSCSEG00000017396) #28	med21 (ENSCSEG00000017391) #25	fgfr1op2 (ENSCSEG00000017375) #22	TM7SF3 (ENSCSEG00000017360) #24	gas2l3 (ENSCSEG00000017311)	arid2 (ENSCSEG00000017204)	ENSCSEG00000017186	slc38a2 (ENSCSEG00000017164)	slc38a4 (ENSCSEG00000017134)	ENSCSEG00000017128	kcnc2 (ENSCSEG00000017121)	ENSCSEG00000017085	e2f7 (ENSCSEG00000017069)	csrp2 (ENSCSEG00000017059)	zdhhc17 (ENSCSEG00000017045)	ENSCSEG00000017039	OSBPL8 (ENSCSEG00000016987)	nap1l1 (ENSCSEG00000016887)
Turbot	MODERN SPECIES	11	FBH1 (ENSSMAG00000012330)	ENSSMAG00000012356	ENSSMAG00000012368	PFKFB3 (ENSSMAG00000012459)	ntf3 (ENSSMAG00000012507)	ENSSMAG00000012521	ENSSMAG00000012573	ENSSMAG00000012631	ENSSMAG00000012658	coa6 (ENSSMAG00000037204)	slc13a4 (ENSSMAG00000012703)	zgc:162331 (ENSSMAG00000030448)	BMAL2 (ENSSMAG00000012779) #29	STK38L (ENSSMAG00000012841) #28	MED21 (ENSSMAG00000033563) #25	ENSSMAG00000012917 #22	TM7SF3 (ENSSMAG00000012937) #24	ENSSMAG00000012954	arid2 (ENSSMAG00000012985)	ENSSMAG00000013031	slc38a2 (ENSSMAG00000013064)	ENSSMAG00000013118	ENSSMAG00000013169	ENSSMAG00000013173	ENSSMAG00000013233	ENSSMAG00000013267	ENSSMAG00000013277	ENSSMAG00000013281	ENSSMAG00000013291	apex1 (ENSSMAG00000028423)	ENSSMAG00000013365
Carangaria_A	ANCESTRAL SPECIES	33	ENSGT00390000011669	ENSGT01030000234868	ENSGT00790000123099	ENSGT00950000182835.d.b	ENSGT00390000007725.A.a	ENSGT00940000155840.B	ENSGT00940000156858	ENSGT00390000011239.j	ENSGT00940000155529.B	ENSGT00390000004094	ENSGT01030000234550.a.a.d.a.b	ENSGT00940000166253	ENSGT00940000160423.b #29	ENSGT00940000153544.b #28	ENSGT00390000014557 #25	ENSGT00390000018003.b #22	ENSGT00390000008702 #24	ENSGT00940000159389	ENSGT00390000016138	ENSGT00950000183205.b.a.b.a.b	ENSGT00940000155486	ENSGT00940000158917	ENSGT00950000183146.a.a	ENSGT00940000158600	ENSGT00950000182866.D.d.a.c.b.a.a	ENSGT00940000164836	ENSGT01070000253760.b.b.a.a.c.b	ENSGT00940000178511	ENSGT00390000005508.a.b	ENSGT01100000263533.b.b.b.a.b.a.b	ENSGT00530000063540.b
Seriola	ANCESTRAL SPECIES	9	ENSGT00390000011669	ENSGT01030000234868	ENSGT00790000123099	ENSGT00950000182835.d.b	ENSGT00390000007725.A.a	ENSGT00940000155840.B	ENSGT00940000156858	ENSGT00390000011239.j	ENSGT00940000155529.B	ENSGT00390000004094	ENSGT01030000234550.a.a.d.a.b	ENSGT00940000166253	ENSGT00940000160423.b #29	ENSGT00940000153544.b #28	ENSGT00390000014557 #25	ENSGT00390000018003.b #22	ENSGT00390000008702 #24	ENSGT00940000159389	ENSGT00390000016138	ENSGT00950000183205.b.a.b.a.b	ENSGT00940000155486	ENSGT00940000158917	ENSGT00950000183146.a.a	ENSGT00940000158600	ENSGT00950000182866.D.d.a.c.b.a.a	ENSGT00940000164836.q	ENSGT01070000253760.b.b.a.a.c.b	ENSGT00390000005508.a.b	ENSGT01100000263533.b.b.b.a.b.a.b	ENSGT00530000063540.b	ENSGT00940000153744.B
Yellowtail amberjack	MODERN SPECIES	2836					ntf3 (ENSSLDG00000017062)	ano2b (ENSSLDG00000017103)	pik3cg (ENSSLDG00000017243)	ENSSLDG00000017324	PTPRZ1 (ENSSLDG00000017401)	coa6 (ENSSLDG00000017456)	slc13a4 (ENSSLDG00000017527)	zgc:162331 (ENSSLDG00000017615)	BMAL2 (ENSSLDG00000017650) #29	stk38l (ENSSLDG00000017690) #28	med21 (ENSSLDG00000017720) #25	fgfr1op2 (ENSSLDG00000017737) #22	TM7SF3 (ENSSLDG00000017755) #24	gas2l3 (ENSSLDG00000017788)	arid2 (ENSSLDG00000017839)	ENSSLDG00000017905	slc38a2 (ENSSLDG00000017924)
Greater amberjack	MODERN SPECIES	60	ENSSDUG00000014987	rbm17 (ENSSDUG00000015015)	pfkfb3 (ENSSDUG00000015089)	ntf3 (ENSSDUG00000015145)	ano2b (ENSSDUG00000015165)	pik3cg (ENSSDUG00000015284)	HBP1 (ENSSDUG00000015387)	ENSSDUG00000015429	coa6 (ENSSDUG00000015577)	slc13a4 (ENSSDUG00000015590)	zgc:162331 (ENSSDUG00000015616)	ENSSDUG00000015633	BMAL2 (ENSSDUG00000015650) #29	stk38l (ENSSDUG00000015698) #28	med21 (ENSSDUG00000015731) #25	fgfr1op2 (ENSSDUG00000015749) #22	TM7SF3 (ENSSDUG00000015776) #24	gas2l3 (ENSSDUG00000015828)	arid2 (ENSSDUG00000015858)	ENSSDUG00000015890	slc38a2 (ENSSDUG00000015919)	slc38a4 (ENSSDUG00000015970)	ENSSDUG00000016008	ANO4 (ENSSDUG00000016036)	NXPE3 (ENSSDUG00000016189)	ENSSDUG00000016229	ENSSDUG00000016250	ENSSDUG00000016267	ENSSDUG00000016291	selenoo2 (ENSSDUG00000016311)	ENSSDUG00000016330
Barramundi perch	MODERN SPECIES	256					ntf3 (ENSLCAG00010026027)	ano2b (ENSLCAG00010026061)	pik3cg (ENSLCAG00010026154)	HBP1 (ENSLCAG00010026163)	ENSLCAG00010026205	coa6 (ENSLCAG00010026261)	slc13a4 (ENSLCAG00010026263)	zgc:162331 (ENSLCAG00010026266)	BMAL2 (ENSLCAG00010026267) #29	stk38l (ENSLCAG00010026271) #28	med21 (ENSLCAG00010026284) #25	fgfr1op2 (ENSLCAG00010026289) #22	TM7SF3 (ENSLCAG00010026297) #24	gas2l3 (ENSLCAG00010026307)	arid2 (ENSLCAG00010026317)	ENSLCAG00010026333	slc38a2 (ENSLCAG00010026358)	slc38a4 (ENSLCAG00010026398)	AMIGO2 (ENSLCAG00010026426)	ANO4 (ENSLCAG00010026429)	NXPE3 (ENSLCAG00010026438)	NXPE3 (ENSLCAG00010026444)	ENSLCAG00010026447	ENSLCAG00010026448	ENSLCAG00010026449	SELENOO (ENSLCAG00010026451)	ENSLCAG00010026455
Eupercaria	ANCESTRAL SPECIES	21	ENSGT01030000234868	ENSGT00790000123099	ENSGT00950000182835.d.b	ENSGT00390000007725.A.a	ENSGT00940000179100	ENSGT00940000155840.B	ENSGT00940000156858	ENSGT00390000011239.j	ENSGT00940000155529.B	ENSGT00390000004094	ENSGT01030000234550.a.a.d.a.b	ENSGT00940000166253	ENSGT00940000160423.b #29	ENSGT00940000153544.b #28	ENSGT00390000014557 #25	ENSGT00390000018003.b #22	ENSGT00390000008702 #24	ENSGT00940000159389	ENSGT00390000016138	ENSGT00980000203435	ENSGT00950000183205.b.a.b.a.b	ENSGT00940000155486	ENSGT00940000158917	ENSGT00950000183146.a.a	ENSGT00940000158600	ENSGT00950000182866.D.d.a.c.b.a.a	ENSGT00940000164836	ENSGT01070000253760.b.b.a.a.c.b	ENSGT00390000005508.a.b	ENSGT01100000263533.b.b.b.a.b.a.b	ENSGT00940000162179.e.b.a.a.b
Tetraodontidae	ANCESTRAL SPECIES	17	ENSGT00390000011669	ENSGT01030000234868	ENSGT00790000123099	ENSGT00950000182835.d.b	ENSGT00390000007725.A.a	ENSGT00940000155840.B	ENSGT00940000156858	ENSGT00390000011239.j	ENSGT00940000155529.B	ENSGT00390000004094	ENSGT01030000234550.a.a.d.a.b	ENSGT00940000166253	ENSGT00940000160423.b #29	ENSGT00940000153544.b #28	ENSGT00390000014557 #25	ENSGT00390000018003.b #22	ENSGT00390000008702 #24	ENSGT00940000159389	ENSGT00390000016138	ENSGT00950000183205.b.a.b.a.b	ENSGT00940000155486	ENSGT00940000158917	ENSGT00950000183146.a.a	ENSGT00400000024636	ENSGT00950000182866.D.d.a.c.b.a.a	ENSGT00940000164836	ENSGT00940000156207.b.c.a.b	ENSGT00530000063540.b	ENSGT00940000153744.B	ENSGT00390000009992	ENSGT01060000248862
Fugu	MODERN SPECIES	9	nudt5 (ENSTRUG00000028442)	il15ra (ENSTRUG00000021139)	rbm17 (ENSTRUG00000010698)	pfkfb3 (ENSTRUG00000010861)	ntf3 (ENSTRUG00000011136)	ano2b (ENSTRUG00000011161)	pik3cg (ENSTRUG00000011555)	HBP1 (ENSTRUG00000011881)	ENSTRUG00000012030	coa6 (ENSTRUG00000023593)	slc13a4 (ENSTRUG00000028099)	zgc:162331 (ENSTRUG00000002933)	BMAL2 (ENSTRUG00000002984) #29	stk38l (ENSTRUG00000030601) #28	med21 (ENSTRUG00000028175) #25	fgfr1op2 (ENSTRUG00000004485) #22	TM7SF3 (ENSTRUG00000004685) #24	ENSTRUG00000033083	gas2l3 (ENSTRUG00000021510)	arid2 (ENSTRUG00000004073)	ENSTRUG00000002600	AMIGO2 (ENSTRUG00000003339)	ENSTRUG00000033473	BEST3 (ENSTRUG00000002954)	ENSTRUG00000022109	cct2 (ENSTRUG00000001566)	MYRFL (ENSTRUG00000001490)	ENSTRUG00000031123	rab21 (ENSTRUG00000029495)	ENSTRUG00000025948	KCNMB4 (ENSTRUG00000002261)
Tetraodon	MODERN SPECIES	26	ENSTNIG00000001016	ENSTNIG00000005106	ENSTNIG00000001085	ENSTNIG00000000474	maneal (ENSTNIG00000009801)	lin28ab (ENSTNIG00000009802)	pdik1l (ENSTNIG00000009803)	ENSTNIG00000000675	foxo6b (ENSTNIG00000009804)	cited4a (ENSTNIG00000009805)	ctps1a (ENSTNIG00000009806)	rab42a (ENSTNIG00000009807)	ZDHHC18 (ENSTNIG00000009808)	TMEM222 (ENSTNIG00000009809)	tpbga (ENSTNIG00000009810)	fgfr1op2 (ENSTNIG00000009811) #22	ENSTNIG00000009812 #24	SLITRK4 (ENSTNIG00000010114)	acsl1b (ENSTNIG00000010115)	ENSTNIG00000000345	st3gal5 (ENSTNIG00000001056)	POLR1A (ENSTNIG00000010116)	ptcd3 (ENSTNIG00000010117)	CNGA2 (ENSTNIG00000010118)	snx25 (ENSTNIG00000010119)	FGF4 (ENSTNIG00000010120)	fmr1 (ENSTNIG00000010121)	rab33a (ENSTNIG00000010122)	HDAC3 (ENSTNIG00000010123)	ENSTNIG00000010124	zgc:113425 (ENSTNIG00000000099)
Eupecaria_A	ANCESTRAL SPECIES	21	ENSGT01030000234868	ENSGT00790000123099	ENSGT00950000182835.d.b	ENSGT00390000007725.A.a	ENSGT00940000179100	ENSGT00940000155840.B	ENSGT00940000156858	ENSGT00390000011239.j	ENSGT00940000155529.B	ENSGT00390000004094	ENSGT01030000234550.a.a.d.a.b	ENSGT00940000166253	ENSGT00940000160423.b #29	ENSGT00940000153544.b #28	ENSGT00390000014557 #25	ENSGT00390000018003.b #22	ENSGT00390000008702 #24	ENSGT00940000159389	ENSGT00390000016138	ENSGT00980000203435	ENSGT00950000183205.b.a.b.a.b	ENSGT00940000155486	ENSGT00940000158917	ENSGT00950000183146.a.a	ENSGT00940000158600	ENSGT00950000182866.D.d.a.c.b.a.a	ENSGT00940000164836	ENSGT01070000253760.b.b.a.a.c.b	ENSGT00390000005508.a.b	ENSGT01100000263533.b.b.b.a.b.a.b	ENSGT00940000162179.e.b.a.a.b
Ballan wrasse	MODERN SPECIES	409												zgc:162331 (ENSLBEG00000025326)	BMAL2 (ENSLBEG00000025301) #29	stk38l (ENSLBEG00000025255) #28	med21 (ENSLBEG00000025229) #25	fgfr1op2 (ENSLBEG00000025213) #22	TM7SF3 (ENSLBEG00000025190) #24	gas2l3 (ENSLBEG00000025164)	arid2 (ENSLBEG00000025089)	ENSLBEG00000025033	slc38a2 (ENSLBEG00000025003)	slc38a4 (ENSLBEG00000024951)	ENSLBEG00000024919	ANO4 (ENSLBEG00000024864)	ENSLBEG00000024830
Eupecaria_B	ANCESTRAL SPECIES	21	ENSGT01030000234868	ENSGT00790000123099	ENSGT00950000182835.d.b	ENSGT00390000007725.A.a	ENSGT00940000179100	ENSGT00940000155840.B	ENSGT00940000156858	ENSGT00390000011239.j	ENSGT00940000155529.B	ENSGT00390000004094	ENSGT01030000234550.a.a.d.a.b	ENSGT00940000166253	ENSGT00940000160423.b #29	ENSGT00940000153544.b #28	ENSGT00390000014557 #25	ENSGT00390000018003.b #22	ENSGT00390000008702 #24	ENSGT00940000159389	ENSGT00390000016138	ENSGT00980000203435	ENSGT00950000183205.b.a.b.a.b	ENSGT00940000155486	ENSGT00940000158917	ENSGT00950000183146.a.a	ENSGT00940000158600	ENSGT00950000182866.D.d.a.c.b.a.a	ENSGT00940000164836	ENSGT01070000253760.b.b.a.a.c.b	ENSGT00390000005508.a.b	ENSGT00940000162179.e.b.a.a.b	ENSGT00530000063540.b
Perciformes	ANCESTRAL SPECIES	18	ENSGT01030000234868	ENSGT00790000123099	ENSGT00950000182835.d.b	ENSGT00390000007725.A.a	ENSGT00940000179100	ENSGT00940000155840.B	ENSGT00940000156858	ENSGT00390000011239.j	ENSGT00940000155529.B	ENSGT00390000004094	ENSGT01030000234550.a.a.d.a.b	ENSGT00940000166253	ENSGT00940000160423.b #29	ENSGT00940000153544.b #28	ENSGT00390000014557 #25	ENSGT00390000018003.b #22	ENSGT00390000008702 #24	ENSGT00940000159389	ENSGT00390000016138	ENSGT00980000203435	ENSGT00950000183205.b.a.b.a.b	ENSGT00940000155486	ENSGT00940000158917	ENSGT00950000183146.a.a	ENSGT00940000158600	ENSGT00530000063540.b	ENSGT00940000153744.B	ENSGT00390000009992	ENSGT00940000179382	ENSGT01100000263519.D	ENSGT01060000248677
Cottioidei	ANCESTRAL SPECIES	19	ENSGT00390000011669	ENSGT01030000234868	ENSGT00790000123099	ENSGT00950000182835.d.b	ENSGT00390000007725.A.a	ENSGT00940000155840.B	ENSGT00940000156858	ENSGT00390000011239.j	ENSGT00940000155529.B	ENSGT00390000004094	ENSGT01030000234550.a.a.d.a.b	ENSGT00940000166253	ENSGT00940000160423.b #29	ENSGT00940000153544.b #28	ENSGT00390000014557 #25	ENSGT00390000018003.b #22	ENSGT00390000008702 #24	ENSGT00940000159389	ENSGT00390000016138	ENSGT00950000183205.b.a.b.a.b	ENSGT00940000155486	ENSGT00940000158917	ENSGT00950000183146.a.a	ENSGT00940000158600	ENSGT00950000182866.D.d.a.c.b.a.a.v	ENSGT00400000024636	ENSGT00950000182866.D.d.a.c.b.a.a.u	ENSGT00530000063540.b	ENSGT00940000153744.B	ENSGT00390000009992	ENSGT00940000179382
Stickleback	MODERN SPECIES	3	csnk1a1 (ENSGACG00000019578)	FBXO38 (ENSGACG00000019572)	magt1 (ENSGACG00000019568)	igbp1 (ENSGACG00000019563)	abhd18 (ENSGACG00000019560)	rnf103 (ENSGACG00000019558)	tmem129 (ENSGACG00000019555)	atoh8 (ENSGACG00000019554)	SLITRK2 (ENSGACG00000019553)	hspa9 (ENSGACG00000019542)	rab33ba (ENSGACG00000019540)	zgc:113425 (ENSGACG00000019538)	setd7 (ENSGACG00000019534)	stk38l (ENSGACG00000019532) #28	med21 (ENSGACG00000019530) #25	fgfr1op2 (ENSGACG00000019527) #22	TM7SF3 (ENSGACG00000019525) #24	ENSGACG00000019524	arid2 (ENSGACG00000019522)	ENSGACG00000019521	slc38a2 (ENSGACG00000019520)	slc38a4 (ENSGACG00000019519)	ENSGACG00000019518	ENSGACG00000019517	NXPE3 (ENSGACG00000019515)	NXPE3 (ENSGACG00000019512)	ANO4 (ENSGACG00000019509)	NXPE3 (ENSGACG00000019508)	NXPE3 (ENSGACG00000019506)	ENSGACG00000019505	ENSGACG00000019504
Lumpfish	MODERN SPECIES	15	ENSCLMG00005022926	ENSCLMG00005022928	e2f7 (ENSCLMG00005022931)	nav3 (ENSCLMG00005022936)	ENSCLMG00005022938	ENSCLMG00005022940	ENSCLMG00005022942	si:ch211-214j24.10 (ENSCLMG00005022945)	osgep (ENSCLMG00005022950)	apex1 (ENSCLMG00005010397)	ENSCLMG00005010398	ENSCLMG00005010401	BMAL2 (ENSCLMG00005010402) #29	stk38l (ENSCLMG00005010403) #28	med21 (ENSCLMG00005010429) #25	fgfr1op2 (ENSCLMG00005010431) #22	TM7SF3 (ENSCLMG00005010433) #24	gas2l3 (ENSCLMG00005010441)	arid2 (ENSCLMG00005010467)	ENSCLMG00005012141	slc38a2 (ENSCLMG00005012143)	slc38a4 (ENSCLMG00005012155)	ENSCLMG00005014298	ANO4 (ENSCLMG00005014300)	NXPE3 (ENSCLMG00005014303)	mcm10 (ENSCLMG00005014306)	NXPE3 (ENSCLMG00005014362)	zgc:162331 (ENSCLMG00005014364)	slc13a4 (ENSCLMG00005014366)	coa6 (ENSCLMG00005014369)	ENSCLMG00005014370
Perciformes_a	ANCESTRAL SPECIES	19	ENSGT01030000234868	ENSGT00790000123099	ENSGT00950000182835.d.b	ENSGT00390000007725.A.a	ENSGT00940000179100	ENSGT00940000155840.B	ENSGT00940000156858	ENSGT00390000011239.j	ENSGT00940000155529.B	ENSGT00390000004094	ENSGT01030000234550.a.a.d.a.b	ENSGT00940000166253	ENSGT00940000160423.b #29	ENSGT00940000153544.b #28	ENSGT00390000014557 #25	ENSGT00390000018003.b #22	ENSGT00390000008702 #24	ENSGT00940000159389	ENSGT00390000016138	ENSGT00980000203435	ENSGT00950000183205.b.a.b.a.b	ENSGT00940000155486	ENSGT00940000158917	ENSGT00950000183146.a.a	ENSGT00940000158600	ENSGT00950000182866.D.d.a.c.b.a.a	ENSGT00940000164836	ENSGT01070000253760.b.b.a.a.c.b	ENSGT00390000005508.a.b	ENSGT00530000063540.b	ENSGT00940000153744.B
Pike perch	MODERN SPECIES	20	fbxo18 (ENSSLUG00000018015)	ENSSLUG00000018041	rbm17 (ENSSLUG00000018053)	pfkfb3 (ENSSLUG00000018257)	ntf3 (ENSSLUG00000021677)	ano2b (ENSSLUG00000021706)	pik3cg (ENSSLUG00000021836)	HBP1 (ENSSLUG00000022978)	PTPRZ1 (ENSSLUG00000022989)	coa6 (ENSSLUG00000023018)	slc13a4 (ENSSLUG00000023024)	zgc:162331 (ENSSLUG00000023033)	BMAL2 (ENSSLUG00000023039) #29	stk38l (ENSSLUG00000023045) #28	med21 (ENSSLUG00000023056) #25	fgfr1op2 (ENSSLUG00000023060) #22	TM7SF3 (ENSSLUG00000023063) #24	gas2l3 (ENSSLUG00000023083)	arid2 (ENSSLUG00000023098)	ENSSLUG00000023128	slc38a2 (ENSSLUG00000023182)	slc38a4 (ENSSLUG00000023732)	ENSSLUG00000023944	ANO4 (ENSSLUG00000005306)	NXPE3 (ENSSLUG00000005940)	ENSSLUG00000005949	NXPE3 (ENSSLUG00000005962)	ENSSLUG00000005973	selenoo2 (ENSSLUG00000005988)	NXPE3 (ENSSLUG00000006057)	NXPE3 (ENSSLUG00000006065)
Channel bull blenny	MODERN SPECIES	15	ENSCGOG00000019076	ENSCGOG00000019078	ENSCGOG00000019080	ntf3 (ENSCGOG00000019082)	ENSCGOG00000019083	ano2b (ENSCGOG00000019086)	ENSCGOG00000019089	ENSCGOG00000019101	ENSCGOG00000019107	slc13a4 (ENSCGOG00000019511)	coa6 (ENSCGOG00000019554)	zgc:162331 (ENSCGOG00000019555)	BMAL2 (ENSCGOG00000019558) #29	stk38l (ENSCGOG00000019571) #28	med21 (ENSCGOG00000020119) #25	fgfr1op2 (ENSCGOG00000020151) #22	TM7SF3 (ENSCGOG00000020161) #24	gas2l3 (ENSCGOG00000020180)	arid2 (ENSCGOG00000020260)	ENSCGOG00000020508	ENSCGOG00000020512	slc38a2 (ENSCGOG00000020534)	slc38a4 (ENSCGOG00000020984)	AMIGO2 (ENSCGOG00000022027)	ANO4 (ENSCGOG00000022036)	ENSCGOG00000022087	ENSCGOG00000022091	ENSCGOG00000022094	apex1 (ENSCGOG00000022098)	si:ch211-214j24.10 (ENSCGOG00000022099)	osgep (ENSCGOG00000022102)
Eupecaria_C	ANCESTRAL SPECIES	18	ENSGT00390000011669	ENSGT01030000234868	ENSGT00790000123099	ENSGT00950000182835.d.b	ENSGT00390000007725.A.a	ENSGT00940000155840.B	ENSGT00940000156858	ENSGT00390000011239.j	ENSGT00940000155529.B	ENSGT00390000004094	ENSGT01030000234550.a.a.d.a.b	ENSGT00940000166253	ENSGT00940000160423.b #29	ENSGT00940000153544.b #28	ENSGT00390000014557 #25	ENSGT00390000018003.b #22	ENSGT00390000008702 #24	ENSGT00940000159389	ENSGT00390000016138	ENSGT00950000183205.b.a.b.a.b	ENSGT00940000155486	ENSGT00940000158917	ENSGT00950000183146.a.a	ENSGT00940000158600	ENSGT00950000182866.D.d.a.c.b.a.a	ENSGT00940000164836	ENSGT01070000253760.b.b.a.a.c.b	ENSGT00390000005508.a.b	ENSGT00940000162179.e.b.a.a.b	ENSGT00530000063540.b	ENSGT00940000153744.B
Gilthead seabream	MODERN SPECIES	5	fbxo18 (ENSSAUG00010020562)	ENSSAUG00010020559	rbm17 (ENSSAUG00010020556)	pfkfb3 (ENSSAUG00010019660)	ntf3 (ENSSAUG00010019651)	ano2b (ENSSAUG00010016231)	pik3cg (ENSSAUG00010014438)	HBP1 (ENSSAUG00010014418)	ENSSAUG00010013763	COA6 (ENSSAUG00010013759)	slc13a4 (ENSSAUG00010013597)	zgc:162331 (ENSSAUG00010013595)	BMAL2 (ENSSAUG00010013586) #29	stk38l (ENSSAUG00010013202) #28	med21 (ENSSAUG00010013197) #25	fgfr1op2 (ENSSAUG00010013196) #22	TM7SF3 (ENSSAUG00010012970) #24	gas2l3 (ENSSAUG00010012954)	arid2 (ENSSAUG00010012924)	ENSSAUG00010012922	slc38a4 (ENSSAUG00010011653)	ENSSAUG00010011641	ANO4 (ENSSAUG00010011593)	NXPE3 (ENSSAUG00010011577)	NXPE3 (ENSSAUG00010011572)	NXPE3 (ENSSAUG00010011570)	ENSSAUG00010011569	ENSSAUG00010011568	selenoo2 (ENSSAUG00010011550)	ENSSAUG00010011546	apex1 (ENSSAUG00010011545)
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	34	ENSGT00390000011669	ENSGT01030000234868	ENSGT00790000123099	ENSGT00950000182835.d.b	ENSGT00390000007725.A.a	ENSGT00940000155840.B	ENSGT00940000156858	ENSGT00390000011239.j	ENSGT00940000155529.B	ENSGT00390000004094	ENSGT01030000234550.a.a.d.a.b	ENSGT00940000166253	ENSGT00940000160423.b #29	ENSGT00940000153544.b #28	ENSGT00390000014557 #25	ENSGT00390000018003.b #22	ENSGT00390000008702 #24	ENSGT00940000159389	ENSGT00390000016138	ENSGT00950000183205.b.a.b.a.b	ENSGT00940000155486	ENSGT00940000158917	ENSGT00950000183146.a.a	ENSGT00940000158600	ENSGT00950000182866.D.d.a.c.b.a.a	ENSGT00940000164836	ENSGT01070000253760.b.b.a.a.c.b	ENSGT00390000005508.a.b	ENSGT00940000162179.e.b.a.a.b	ENSGT00530000063540.b	ENSGT00940000153744.B
Large yellow croaker	MODERN SPECIES	50												zgc:162331 (ENSLCRG00005018041)	BMAL2 (ENSLCRG00005018038) #29	stk38l (ENSLCRG00005018032) #28	med21 (ENSLCRG00005018031) #25	fgfr1op2 (ENSLCRG00005018029) #22	TM7SF3 (ENSLCRG00005017918) #24	gas2l3 (ENSLCRG00005017915)	arid2 (ENSLCRG00005017914)	ENSLCRG00005017911	slc38a2 (ENSLCRG00005017315)	slc38a4 (ENSLCRG00005017236)	ENSLCRG00005017220	ANO4 (ENSLCRG00005017191)	ENSLCRG00005017189	ENSLCRG00005017188	selenoo2 (ENSLCRG00005017186)	ENSLCRG00005017185	apex1 (ENSLCRG00005017183)	osgep (ENSLCRG00005017173)	si:ch211-214j24.10 (ENSLCRG00005017171)
Tiger tail seahorse	MODERN SPECIES	407	rbm17 (ENSHCOG00000010865)	pfkfb3 (ENSHCOG00000010850)	ntf3 (ENSHCOG00000010833)	ano2b (ENSHCOG00000010810)	ENSHCOG00000010781	ENSHCOG00000010763	HBP1 (ENSHCOG00000010740)	ENSHCOG00000010728	ENSHCOG00000010717	coa6 (ENSHCOG00000010698)	slc13a4 (ENSHCOG00000010660)	zgc:162331 (ENSHCOG00000000331)	BMAL2 (ENSHCOG00000010607) #29	stk38l (ENSHCOG00000010564) #28	med21 (ENSHCOG00000010515) #25	fgfr1op2 (ENSHCOG00000010497) #22	TM7SF3 (ENSHCOG00000010491) #24	gas2l3 (ENSHCOG00000010427)	arid2 (ENSHCOG00000010380)	ENSHCOG00000010029	slc38a2 (ENSHCOG00000010019)	slc38a4 (ENSHCOG00000010009)	ENSHCOG00000009989	ENSHCOG00000009970	apex1 (ENSHCOG00000009961)	osgep (ENSHCOG00000009941)	si:ch211-214j24.10 (ENSHCOG00000009918)	ENSHCOG00000009911	ENSHCOG00000009892	hcfc2 (ENSHCOG00000009807)	nav3 (ENSHCOG00000009786)
Pinecone sodierfish	MODERN SPECIES	15	ENSMMDG00005024092	ENSMMDG00005024086	ENSMMDG00005024083	atp23 (ENSMMDG00005024080)	rpap3 (ENSMMDG00005024074)	mapk12b (ENSMMDG00005024069)	mapk11 (ENSMMDG00005024064)	slc13a4 (ENSMMDG00005024059)	zgc:162331 (ENSMMDG00005024056)	ENSMMDG00005024053	ENSMMDG00005024050	ENSMMDG00005024048	BMAL2 (ENSMMDG00005024042) #29	stk38l (ENSMMDG00005024036) #28	med21 (ENSMMDG00005024030) #25	fgfr1op2 (ENSMMDG00005024027) #22	TM7SF3 (ENSMMDG00005024025) #24	ENSMMDG00005024022	gas2l3 (ENSMMDG00005024020)	arid2 (ENSMMDG00005023798)	ENSMMDG00005023787	slc38a2 (ENSMMDG00005023780)	slc38a4 (ENSMMDG00005023776)	ENSMMDG00005023774	ANO4 (ENSMMDG00005023770)	NXPE3 (ENSMMDG00005023767)	ENSMMDG00005023765	ENSMMDG00005023764	NXPE3 (ENSMMDG00005023761)	NXPE3 (ENSMMDG00005023756)	NXPE3 (ENSMMDG00005023753)
Cod	MODERN SPECIES	17	ENSGMOG00000031287	ENSGMOG00000030658	RECQL (ENSGMOG00000010504)	golt1ba (ENSGMOG00000003486)	spx (ENSGMOG00000024578)	GYS2 (ENSGMOG00000003448)	ENSGMOG00000003433	LDHB (ENSGMOG00000016498)	slc25a3a (ENSGMOG00000001907)	ENSGMOG00000035545	ENSGMOG00000034185	ENSGMOG00000023651	ENSGMOG00000012993	STK38L (ENSGMOG00000014317) #28	MED21 (ENSGMOG00000019053) #25	ENSGMOG00000019412 #22	TM7SF3 (ENSGMOG00000019040) #24	ENSGMOG00000035994	ENSGMOG00000031567	ENSGMOG00000031018	ENSGMOG00000016013	ENSGMOG00000016007	ENSGMOG00000026292	ENSGMOG00000034412	ENSGMOG00000003625	ENSGMOG00000036179	ENSGMOG00000018688	ENSGMOG00000027333	ENSGMOG00000036980	ENSGMOG00000015862	ENSGMOG00000015883
Protacanthopterygii	ANCESTRAL SPECIES	23	ENSGT00940000159379	ENSGT00940000154479.a.a.b	ENSGT00430000031071	ENSGT00940000158940.a	ENSGT00390000007640.a	ENSGT00970000193390.c.b.b.a.l.b	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00940000158155	ENSGT00730000112347	ENSGT00940000158804	ENSGT00940000166093	ENSGT00510000049725	ENSGT00940000160423.b #29	ENSGT00940000153544.b #28	ENSGT00390000014557 #25	ENSGT00390000018003.b #22	ENSGT00390000008702 #24	ENSGT00940000159389	ENSGT00390000016138	ENSGT00950000183205.b.a.b.a.b	ENSGT00940000155486	ENSGT00940000158917	ENSGT00950000183146.a.a	ENSGT00940000158600	ENSGT00390000009277	ENSGT01100000263556.a.a.p.b.b.b.b	ENSGT00950000182839.B.a.a.k #15	ENSGT00910000144343	ENSGT00940000158677	ENSGT00940000155210.a.b	ENSGT00540000070023.c.b.h
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	165	ENSGT00430000031071.a	ENSGT00940000158940.a	ENSGT00390000007640.a	ENSGT00970000193390.c.b.b.a.l.b.a	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00940000155368.g.a.b	ENSGT00940000158155.f	ENSGT00730000112347.a.b	ENSGT00940000158804	ENSGT00940000166093	ENSGT00510000049725.h	ENSGT01030000234982.j.a	ENSGT00940000160423.b.b #29	ENSGT00940000153544.b.d #28	ENSGT00390000014557.hb #25	ENSGT00390000018003.b.e #22	ENSGT00390000008702 #24	ENSGT00940000159389.i	ENSGT00390000016138.u	ENSGT00950000183205.b.a.b.a.b.g	ENSGT00940000159389.j	ENSGT00390000016138.v	ENSGT00950000183205.b.a.b.a.b.h	ENSGT00940000155486	ENSGT00940000158917	ENSGT00950000183146.a.a.b	ENSGT00940000158600.n	ENSGT00390000009277.i.a.a	ENSGT00950000183146.a.a.a	ENSGT00940000158600.o	ENSGT00390000009277.i.a.b
Salmoninae_a	ANCESTRAL SPECIES	98	ENSGT00940000154479.a.a.b.c	ENSGT00430000031071.a	ENSGT00940000158940.a.g	ENSGT00390000007640.a.j	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00940000155368.g.a.b	ENSGT00940000158155.f	ENSGT00730000112347.a.b	ENSGT00940000158804.h	ENSGT00940000166093.e.b	ENSGT00510000049725.h	ENSGT01030000234982.j.a	ENSGT00940000160423.b.b #29	ENSGT00940000153544.b.d #28	ENSGT00390000014557.hb #25	ENSGT00390000018003.b.e #22	ENSGT00390000008702 #24	ENSGT00940000159389.i	ENSGT00390000016138.u	ENSGT00950000183205.b.a.b.a.b.g	ENSGT00940000159389.j	ENSGT00390000016138.v	ENSGT00950000183205.b.a.b.a.b.h	ENSGT00940000155486	ENSGT00940000158917	ENSGT00950000183146.a.a.b	ENSGT00940000158600.n	ENSGT00390000009277.i.b	ENSGT00950000183146.a.a.a	ENSGT00940000158600.o	ENSGT00390000009277.i.a.b
Salmo	ANCESTRAL SPECIES	25	ENSGT00940000158940.a.g	ENSGT00390000007640.a.i.a	ENSGT00970000193390.c.b.b.a.l.b.b	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00940000155368.g.a.b	ENSGT00940000158155.f	ENSGT00730000112347.a.b	ENSGT00940000158804.h	ENSGT00940000166093.e.b	ENSGT00510000049725.h	ENSGT01030000234982.j.a	ENSGT00940000154649.A.q	ENSGT00940000160423.b.b #29	ENSGT00940000153544.b.d #28	ENSGT00390000014557.hb #25	ENSGT00390000018003.b.e #22	ENSGT00390000008702.p #24	ENSGT00940000159389.j	ENSGT00390000016138.v	ENSGT00950000183205.b.a.b.a.b.h	ENSGT00940000155486	ENSGT00940000158917.l	ENSGT00940000158600.o	ENSGT00390000009277.i.a.b	ENSGT00390000009277.j.a	ENSGT01100000263556.a.a.p.b.b.b.b	ENSGT00950000182839.B.a.a.k.c #15	ENSGT01090000260059.b.c	ENSGT00940000158677.e	ENSGT00940000155210.a.b.d.b	ENSGT00540000070023.c.b.h.a
Atlantic salmon	MODERN SPECIES	26	cd36 (ENSSSAG00000005358)	ENSSSAG00000108697	mtpn (ENSSSAG00000009664)	chrm2a (ENSSSAG00000101781)	ptn (ENSSSAG00000009681)	ENSSSAG00000009694	ENSSSAG00000009697	ENSSSAG00000009705	ENSSSAG00000009733	ENSSSAG00000008362	ENSSSAG00000009815	ENSSSAG00000009898	ENSSSAG00000009909	BMAL2 (ENSSSAG00000009920) #29	ENSSSAG00000008457 #28	ENSSSAG00000010001 #22	MED21 (ENSSSAG00000009983) #25	ENSSSAG00000010011 #24	ENSSSAG00000010105	ENSSSAG00000010188	ENSSSAG00000015784	slc38a2 (ENSSSAG00000015905)	slc38a4 (ENSSSAG00000096362)	ENSSSAG00000027979	ENSSSAG00000083621	ENSSSAG00000109306	ENSSSAG00000089985	ENSSSAG00000085670 #15	ENSSSAG00000029748	ENSSSAG00000083027	ENSSSAG00000030379
River trout	MODERN SPECIES	38	chrm2a (ENSSTUG00000037389)	ptn (ENSSTUG00000037413)	ENSSTUG00000037439	ENSSTUG00000037449	ENSSTUG00000037454	TULP3 (ENSSTUG00000037473)	rhno1 (ENSSTUG00000037534)	foxm1 (ENSSTUG00000037546)	ENSSTUG00000037560	pex26 (ENSSTUG00000037623)	ENSSTUG00000037632	ENSSTUG00000037639	BMAL2 (ENSSTUG00000037660) #29	stk38l (ENSSTUG00000037696) #28	med21 (ENSSTUG00000037721) #25	fgfr1op2 (ENSSTUG00000037750) #22	TM7SF3 (ENSSTUG00000037770) #24	gas2l3 (ENSSTUG00000037927)	arid2 (ENSSTUG00000037995)	ENSSTUG00000039684	slc38a4 (ENSSTUG00000039743)	ANO4 (ENSSTUG00000040843)	ENSSTUG00000042060	ENSSTUG00000042145	rassf8b (ENSSTUG00000042416) #15	ENSSTUG00000042463	pkp2 (ENSSTUG00000042487)	nudt4b (ENSSTUG00000042509)	ube2nb (ENSSTUG00000042550)	mrpl42 (ENSSTUG00000042602)	ENSSTUG00000042627
Oncorhynchus	ANCESTRAL SPECIES	9	ENSGT00940000154479.a.a.b.c.a	ENSGT00430000031071.a	ENSGT00940000158940.a.g	ENSGT00390000007640.a.j	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00940000155368.g.a.b	ENSGT00940000158155.f	ENSGT00730000112347.a.b	ENSGT00940000158804.h	ENSGT00940000166093.e.b	ENSGT00510000049725.h	ENSGT00940000154649.A.r.a.c.a	ENSGT00940000160423.b.b #29	ENSGT00940000153544.b.c.a #28	ENSGT00390000014557.hb #25	ENSGT00390000018003.b.e #22	ENSGT00390000008702.n #24	ENSGT00940000159389.j	ENSGT00390000016138.v	ENSGT00950000183205.b.a.b.a.b.h	ENSGT00940000155486	ENSGT00940000158917.i	ENSGT00950000183146.a.a.a	ENSGT00940000158600.o.b	ENSGT00990000210244	ENSGT00940000154308.A.b.a.a.a.b	ENSGT00950000182839.B.a.a.k.d #15	ENSGT00910000144343	ENSGT01090000260059.b.c	ENSGT00390000009277.j.b	ENSGT01100000263556.a.a.p.b.b.b.b
Rainbow trout	MODERN SPECIES	13	ENSOMYG00000016238	ENSOMYG00000064794	mtpn (ENSOMYG00000016220)	chrm2a (ENSOMYG00000016204)	ptn (ENSOMYG00000016183)	ENSOMYG00000016173	ENSOMYG00000016139	rhno1 (ENSOMYG00000016132)	ENSOMYG00000016124	ENSOMYG00000016050	ENSOMYG00000016032	ENSOMYG00000016023	BMAL2 (ENSOMYG00000015998) #29	ENSOMYG00000015894 #28	med21 (ENSOMYG00000015875) #25	ENSOMYG00000015853 #22	ENSOMYG00000015238 #24	ENSOMYG00000015145	ENSOMYG00000013411	ENSOMYG00000013113	ENSOMYG00000009878	ENSOMYG00000013108	slc38a2 (ENSOMYG00000012869)	slc38a4 (ENSOMYG00000067871)	ENSOMYG00000072297	ENSOMYG00000011696	nmes1 (ENSOMYG00000011602)	ENSOMYG00000049116	ENSOMYG00000011550	ENSOMYG00000011537 #15	ENSOMYG00000070218
Oncorhynchus_a	ANCESTRAL SPECIES	64	ENSGT00940000154479.a.a.b.c.a	ENSGT00430000031071.a	ENSGT00940000158940.a.g	ENSGT00390000007640.a.j	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00940000155368.g.a.b	ENSGT00940000158155.f	ENSGT00730000112347.a.b	ENSGT00940000158804.h	ENSGT00940000166093.e.b	ENSGT00510000049725.h	ENSGT00940000154649.A.r.a.c.a	ENSGT00940000160423.b.b #29	ENSGT00940000153544.b.c.a #28	ENSGT00390000014557.hb #25	ENSGT00390000018003.b.e #22	ENSGT00390000008702.n #24	ENSGT00940000159389.j	ENSGT00390000016138.v	ENSGT00950000183205.b.a.b.a.b.h	ENSGT00940000155486	ENSGT00940000158917.i	ENSGT00950000183146.a.a.a	ENSGT00940000158600.o.a	ENSGT00940000158600.o.b	ENSGT00950000182839.B.a.a.k.c #15	ENSGT01090000260059.b.c.a	ENSGT00940000158677.e	ENSGT00940000155210.a.b.d.a	ENSGT00940000155210.a.b.d.b	ENSGT00540000070023.c.b.h.a
Coho salmon	MODERN SPECIES	29	ENSOKIG00005004412	ENSOKIG00005004176	mtpn (ENSOKIG00005004169)	chrm2a (ENSOKIG00005004159)	ptn (ENSOKIG00005004141)	ENSOKIG00005004126	ENSOKIG00005004100	rhno1 (ENSOKIG00005004085)	FOXM1 (ENSOKIG00005004071)	ENSOKIG00005004048	pex26 (ENSOKIG00005004017)	ENSOKIG00005004007	BMAL2 (ENSOKIG00005003985) #29	STK38L (ENSOKIG00005003926) #28	med21 (ENSOKIG00005003909) #25	FGFR1OP2 (ENSOKIG00005003901) #22	TM7SF3 (ENSOKIG00005003867) #24	gas2l3 (ENSOKIG00005003841)	ARID2 (ENSOKIG00005003489)	ENSOKIG00005003394	slc38a2 (ENSOKIG00005003285)	ENSOKIG00005003255	ANO4 (ENSOKIG00005002801)	ENSOKIG00005002711	ENSOKIG00005002705	ENSOKIG00005002698	RASSF8 (ENSOKIG00005002686) #15	pkp2 (ENSOKIG00005002644)	nudt4b (ENSOKIG00005002619)	ube2nb (ENSOKIG00005002603)	mrpl42 (ENSOKIG00005002596)
Chinook salmon	DUPLICATION
Chinook salmon	MODERN SPECIES	4	SEMA3C (ENSOTSG00005033114)	ENSOTSG00005033106	mtpn (ENSOTSG00005033104)	ptn (ENSOTSG00005033101)	ENSOTSG00005033075	ENSOTSG00005033074	ENSOTSG00005040084	rhno1 (ENSOTSG00005040082)	foxm1 (ENSOTSG00005040081)	ENSOTSG00005040080	ENSOTSG00005040078	ENSOTSG00005040077	BMAL2 (ENSOTSG00005040071) #29	stk38l (ENSOTSG00005039773) #28	med21 (ENSOTSG00005039771) #25	fgfr1op2 (ENSOTSG00005039769) #22	TM7SF3 (ENSOTSG00005039764) #24	gas2l3 (ENSOTSG00005039762)	arid2 (ENSOTSG00005039481)	ENSOTSG00005039475	ENSOTSG00005039432	slc38a4 (ENSOTSG00005037788)	ENSOTSG00005037773	ANO4 (ENSOTSG00005037751)	ENSOTSG00005037749	rassf8b (ENSOTSG00005037747) #15	ENSOTSG00005037745	pkp2 (ENSOTSG00005037743)	nudt4b (ENSOTSG00005037740)	ube2nb (ENSOTSG00005037603)	ENSOTSG00005037591
Chinook salmon	MODERN SPECIES	3	SEMA3C (ENSOTSG00005047119)	ENSOTSG00005047110	mtpn (ENSOTSG00005047109)	ptn (ENSOTSG00005047108)	ENSOTSG00005047106	ENSOTSG00005047105	ENSOTSG00005047102	rhno1 (ENSOTSG00005047100)	foxm1 (ENSOTSG00005047099)	ENSOTSG00005047097	ENSOTSG00005047094	ENSOTSG00005047093	BMAL2 (ENSOTSG00005047092) #29	stk38l (ENSOTSG00005047091) #28	med21 (ENSOTSG00005047090) #25	fgfr1op2 (ENSOTSG00005047089) #22	TM7SF3 (ENSOTSG00005047088) #24	gas2l3 (ENSOTSG00005047087)	arid2 (ENSOTSG00005047073)	ENSOTSG00005047070	slc38a4 (ENSOTSG00005047047)	ENSOTSG00005047046	ANO4 (ENSOTSG00005047045)	ENSOTSG00005047043	ENSOTSG00005047042	rassf8b (ENSOTSG00005047040) #15	ENSOTSG00005047038	pkp2 (ENSOTSG00005047037)	nudt4b (ENSOTSG00005047036)	ube2nb (ENSOTSG00005047035)	mrpl42 (ENSOTSG00005047034)
Huchen	MODERN SPECIES	1230					ENSHHUG00000009362	ENSHHUG00000009376	ENSHHUG00000009388	rhno1 (ENSHHUG00000009406)	foxm1 (ENSHHUG00000009414)	ENSHHUG00000009459	pex26 (ENSHHUG00000009668)	ENSHHUG00000009681	BMAL2 (ENSHHUG00000009687) #29	stk38l (ENSHHUG00000009713) #28	med21 (ENSHHUG00000009800) #25	fgfr1op2 (ENSHHUG00000009830) #22	TM7SF3 (ENSHHUG00000009888) #24	ENSHHUG00000009906	arid2 (ENSHHUG00000009925)	ENSHHUG00000009977	slc38a2 (ENSHHUG00000010009)	ENSHHUG00000010055
Salmoninae	ANCESTRAL SPECIES	847									ENSGT00940000155368.g.a.a	ENSGT00940000158155.e	ENSGT00730000112347.a.a	ENSGT00510000049725.g	ENSGT00940000160423.b.a #29	ENSGT00940000153544.b.c #28	ENSGT00390000014557.ib #25	ENSGT00390000018003.b.f #22
Huchen	MODERN SPECIES	38	chrm2a (ENSHHUG00000023531)	ENSHHUG00000023529	ptn (ENSHHUG00000023511)	ENSHHUG00000023508	ENSHHUG00000023494	ENSHHUG00000023485	ENSHHUG00000023477	TULP3 (ENSHHUG00000023463)	rhno1 (ENSHHUG00000023461)	foxm1 (ENSHHUG00000023453)	ENSHHUG00000023353	ENSHHUG00000023330	BMAL2 (ENSHHUG00000023304) #29	stk38l (ENSHHUG00000023293) #28	med21 (ENSHHUG00000023202) #25	fgfr1op2 (ENSHHUG00000023192) #22	TM7SF3 (ENSHHUG00000023180) #24	gas2l3 (ENSHHUG00000023177)	arid2 (ENSHHUG00000023120)	ENSHHUG00000023109	slc38a2 (ENSHHUG00000023065)	slc38a4 (ENSHHUG00000023033)	AMIGO2 (ENSHHUG00000023023)	ANO4 (ENSHHUG00000022832)	zgc:153317 (ENSHHUG00000022829)	rassf8b (ENSHHUG00000022824) #15	ENSHHUG00000022822	ENSHHUG00000022819	ENSHHUG00000022809	pkp2 (ENSHHUG00000022794)	nudt4b (ENSHHUG00000022791)
Salmoninae_a	ANCESTRAL SPECIES	189						ENSGT00940000155368.g.a.a	ENSGT00940000158155.e	ENSGT00730000112347.a.a	ENSGT00940000158804.g	ENSGT00940000166093.e.a	ENSGT00940000166093.f	ENSGT00510000049725.g	ENSGT00940000160423.b.a #29	ENSGT00940000153544.b.c #28	ENSGT00390000014557.ib #25	ENSGT00390000018003.b.f #22
Salmo	ANCESTRAL SPECIES	81	ENSGT00940000159379.b	ENSGT00940000154479.a.a.b.d.a	ENSGT00430000031071.b	ENSGT00940000158940.a.h	ENSGT00390000007640.a.i.b	ENSGT00970000193390.c.b.b.a.l.b.a	ENSGT00940000155368.g.a.a	ENSGT00940000158155.e	ENSGT00730000112347.a.a	ENSGT00940000158804.g	ENSGT00940000166093.e.a	ENSGT00510000049725.g	ENSGT00940000160423.b.a #29	ENSGT00940000153544.b.c #28	ENSGT00390000014557.ib #25	ENSGT00390000018003.b.f #22	ENSGT00390000008702.o #24	ENSGT00940000159389.i	ENSGT00390000016138.u	ENSGT00950000183205.b.a.b.a.b.g	ENSGT00940000158917.k	ENSGT00950000183146.a.a.b	ENSGT00940000158600.n	ENSGT00390000009277.i.a.a	ENSGT00990000210244	ENSGT00940000154308.A.b.a.a.a.b	ENSGT00950000182839.B.a.a.k.d #15	ENSGT00910000144343	ENSGT01090000260059.b.d	ENSGT00940000158677.f	ENSGT00940000155210.a.b.c
River trout	MODERN SPECIES	34	ENSSTUG00000022553	mtpn (ENSSTUG00000022545)	chrm2a (ENSSTUG00000022540)	ptn (ENSSTUG00000022530)	ENSSTUG00000022523	ENSSTUG00000022514	ENSSTUG00000022502	ENSSTUG00000022470	rhno1 (ENSSTUG00000022461)	foxm1 (ENSSTUG00000022450)	ENSSTUG00000022446	pex26 (ENSSTUG00000022434)	BMAL2 (ENSSTUG00000022406) #29	stk38l (ENSSTUG00000022372) #28	med21 (ENSSTUG00000022340) #25	fgfr1op2 (ENSSTUG00000022314) #22	TM7SF3 (ENSSTUG00000022048) #24	gas2l3 (ENSSTUG00000022015)	arid2 (ENSSTUG00000021087)	ENSSTUG00000045696	slc38a4 (ENSSTUG00000045280)	ENSSTUG00000045257	ANO4 (ENSSTUG00000044666)	ENSSTUG00000044623	ENSSTUG00000044610	ENSSTUG00000044583	rassf8b (ENSSTUG00000044575) #15	ENSSTUG00000044563	ENSSTUG00000044550	pkp2 (ENSSTUG00000044505)	nudt4b (ENSSTUG00000044503)
Atlantic salmon	MODERN SPECIES	8	mtpn (ENSSSAG00000113526)	chrm2a (ENSSSAG00000104247)	ptn (ENSSSAG00000008321)	ENSSSAG00000095747	ENSSSAG00000008335	ENSSSAG00000008343	ENSSSAG00000108077	ENSSSAG00000009795	rhno1 (ENSSSAG00000008356)	ENSSSAG00000008368	ENSSSAG00000008386	ENSSSAG00000113536	ENSSSAG00000118383	BMAL2 (ENSSSAG00000008440) #29	ENSSSAG00000009958 #28	ENSSSAG00000008575 #22	MED21 (ENSSSAG00000008564) #25	ENSSSAG00000008590 #24	ENSSSAG00000008608	ENSSSAG00000008725	ENSSSAG00000121844	slc38a2 (ENSSSAG00000015864)	ENSSSAG00000117611	AMIGO2 (ENSSSAG00000017232)	ENSSSAG00000017632	ENSSSAG00000030104	ENSSSAG00000106297	ENSSSAG00000111050	ENSSSAG00000113200 #15	ENSSSAG00000030354	ENSSSAG00000030631
Oncorhynchus	ANCESTRAL SPECIES	109	ENSGT00430000031071.b	ENSGT00940000158940.a.h	ENSGT00390000007640.a.i	ENSGT00970000193390.c.b.b.a.l.b.a	ENSGT00970000193390.c.b.b.b.a.v	ENSGT00940000155368.g.a.a	ENSGT00940000158155.e	ENSGT00730000112347.b	ENSGT00940000158804.g	ENSGT00940000166093.e.a	ENSGT01000000220187	ENSGT00940000154649.A.q	ENSGT00940000160423.b.a #29	ENSGT00940000153544.b.c.b #28	ENSGT00390000014557.ib #25	ENSGT00390000018003.b.f #22	ENSGT00390000008702.m #24	ENSGT00940000159389.i	ENSGT00390000016138.u	ENSGT00950000183205.b.a.b.a.b.g	ENSGT00940000158917.j	ENSGT00950000183146.a.a.b	ENSGT00940000158600.n	ENSGT00390000009277.i.b
Oncorhynchus_a	ANCESTRAL SPECIES	110								ENSGT00940000159379.a.a	ENSGT00940000154479.a.a.b.c.b	ENSGT00430000031071.b	ENSGT00940000158940.a.h	ENSGT00390000007640.a.i	ENSGT00940000160423.b.a #29	ENSGT00940000153544.b.c.b #28	ENSGT00390000014557.ib #25	ENSGT00390000018003.b.f #22	ENSGT00390000008702.m #24	ENSGT00940000159389.i	ENSGT00390000016138.u	ENSGT00950000183205.b.a.b.a.b.g	ENSGT00940000158917.j	ENSGT00950000183146.a.a.b	ENSGT00940000158600.n	ENSGT00390000009277.i.b	ENSGT00390000009277.j.b	ENSGT01100000263556.a.a.p.b.b.b.b	ENSGT00950000182839.B.a.a.k.d #15	ENSGT00910000144343	ENSGT01090000260059.b.c.b	ENSGT00940000158677.f	ENSGT00940000155210.a.b.c
Chinook salmon	DUPLICATION
Chinook salmon	MODERN SPECIES	8	mtpn (ENSOTSG00005034171)	chrm2a (ENSOTSG00005034173)	ptn (ENSOTSG00005034174)	ENSOTSG00005034178	ENSOTSG00005034179	ENSOTSG00005034181	ENSOTSG00005034182	rhno1 (ENSOTSG00005034183)	foxm1 (ENSOTSG00005034185)	ENSOTSG00005034187	ENSOTSG00005034304	ENSOTSG00005034305	BMAL2 (ENSOTSG00005034307) #29	stk38l (ENSOTSG00005034308) #28	med21 (ENSOTSG00005034309) #25	fgfr1op2 (ENSOTSG00005034310) #22	ENSOTSG00005034311	TM7SF3 (ENSOTSG00005034312) #24	gas2l3 (ENSOTSG00005034313)	arid2 (ENSOTSG00005034314)	ENSOTSG00005034470	slc38a2 (ENSOTSG00005034477)	slc38a4 (ENSOTSG00005034750)	ENSOTSG00005034914	ANO4 (ENSOTSG00005034935)	ENSOTSG00005037040	ENSOTSG00005037041	ENSOTSG00005037043	rassf8b (ENSOTSG00005037044) #15	pkp2 (ENSOTSG00005037045)	nudt4b (ENSOTSG00005037046)
Chinook salmon	MODERN SPECIES	62				ENSOTSG00005041378	ENSOTSG00005041380	ENSOTSG00005041383	ENSOTSG00005041389	rhno1 (ENSOTSG00005041392)	foxm1 (ENSOTSG00005041393)	ENSOTSG00005041396	ENSOTSG00005041457	ENSOTSG00005008578	BMAL2 (ENSOTSG00005008581) #29	stk38l (ENSOTSG00005008584) #28	med21 (ENSOTSG00005008587) #25	fgfr1op2 (ENSOTSG00005008588) #22	ENSOTSG00005008589	TM7SF3 (ENSOTSG00005008590) #24	gas2l3 (ENSOTSG00005008592)	arid2 (ENSOTSG00005008596)	ENSOTSG00005008617	slc38a4 (ENSOTSG00005008619)	ENSOTSG00005008838	ANO4 (ENSOTSG00005008849)	ENSOTSG00005011565	ENSOTSG00005011566	ENSOTSG00005011568	rassf8b (ENSOTSG00005011572) #15	ENSOTSG00005011573	ENSOTSG00005011574	pkp2 (ENSOTSG00005011575)
Coho salmon	MODERN SPECIES	10	SEMA3C (ENSOKIG00005034916)	ENSOKIG00005034801	mtpn (ENSOKIG00005011833)	chrm2a (ENSOKIG00005011822)	ptn (ENSOKIG00005011794)	ENSOKIG00005011776	ENSOKIG00005011771	ENSOKIG00005011760	TULP3 (ENSOKIG00005011733)	ENSOKIG00005011718	foxm1 (ENSOKIG00005011707)	ENSOKIG00005011588	BMAL2 (ENSOKIG00005011496) #29	stk38l (ENSOKIG00005011464) #28	MED21 (ENSOKIG00005011449) #25	fgfr1op2 (ENSOKIG00005011436) #22	TM7SF3 (ENSOKIG00005011357) #24	ENSOKIG00005011342	arid2 (ENSOKIG00005011292)	ENSOKIG00005011265	slc38a4 (ENSOKIG00005010945)	ENSOKIG00005010903	ANO4 (ENSOKIG00005009523)	ENSOKIG00005009444	ENSOKIG00005009438	ENSOKIG00005009424	rassf8b (ENSOKIG00005009414) #15	ENSOKIG00005009394	ENSOKIG00005009383	ENSOKIG00005009310	nudt4b (ENSOKIG00005009290)
Rainbow trout	MODERN SPECIES	6	ptn (ENSOMYG00000014382)	ENSOMYG00000022649	ENSOMYG00000014421	ENSOMYG00000014429	ENSOMYG00000014432	ENSOMYG00000014455	ENSOMYG00000014489	ENSOMYG00000014499	ENSOMYG00000014517	ENSOMYG00000014662	ENSOMYG00000075769	ENSOMYG00000059406	BMAL2 (ENSOMYG00000014718) #29	ENSOMYG00000014751 #28	MED21 (ENSOMYG00000014773) #25	ENSOMYG00000014785 #22	ENSOMYG00000014820 #24	gas2l3 (ENSOMYG00000064984)	ENSOMYG00000014886	ENSOMYG00000014930	SLC38A4 (ENSOMYG00000015017)	ENSOMYG00000015403	ENSOMYG00000015598	ENSOMYG00000016819	ENSOMYG00000063506	ENSOMYG00000055320	ENSOMYG00000072594	ENSOMYG00000032306	ENSOMYG00000032322 #15	ENSOMYG00000032345	ENSOMYG00000032372
Northern pike	MODERN SPECIES	22	ENSELUG00000001038	cd36 (ENSELUG00000002160)	SEMA3C (ENSELUG00000002145)	fam180a (ENSELUG00000002136)	chrm2a (ENSELUG00000002126)	ptn (ENSELUG00000002124)	ENSELUG00000002119	TULP3 (ENSELUG00000002115)	rhno1 (ENSELUG00000002106)	foxm1 (ENSELUG00000002105)	ENSELUG00000002102	pex26 (ENSELUG00000002098)	BMAL2 (ENSELUG00000002091) #29	stk38l (ENSELUG00000002081) #28	med21 (ENSELUG00000031515) #25	fgfr1op2 (ENSELUG00000002072) #22	TM7SF3 (ENSELUG00000002067) #24	gas2l3 (ENSELUG00000002063)	arid2 (ENSELUG00000002052)	ENSELUG00000002038	slc38a4 (ENSELUG00000002032)	ENSELUG00000002017	ANO4 (ENSELUG00000002013)	zgc:153317 (ENSELUG00000001998)	ENSELUG00000001991	rassf8b (ENSELUG00000001993) #15	pkp2 (ENSELUG00000001987)	nudt4b (ENSELUG00000024988)	ube2nb (ENSELUG00000025006)	mrpl42 (ENSELUG00000001973)	ENSELUG00000001969
Spotted gar	MODERN SPECIES	674	pmch (ENSLOCG00000015178)	igf1 (ENSLOCG00000015180)	dram1 (ENSLOCG00000015183)	gnptab (ENSLOCG00000015184)	chpt1 (ENSLOCG00000015186)	mybpc1 (ENSLOCG00000015188)	ENSLOCG00000017893	spic (ENSLOCG00000015193)	arl1 (ENSLOCG00000015195)	UTP20 (ENSLOCG00000015197)	SLC5A8 (ENSLOCG00000015201)	ANO4 (ENSLOCG00000015202)	GAS2L3 (ENSLOCG00000015204)	nr1h4 (ENSLOCG00000015206)	slc17a8 (ENSLOCG00000015210)	fgfr1op2 (ENSLOCG00000015212) #22	TM7SF3 (ENSLOCG00000015214) #24	ENSLOCG00000015216	stk38l (ENSLOCG00000015219) #28	arntl2 (ENSLOCG00000015224) #29	ENSLOCG00000015230	si:ch211-245j22.3 (ENSLOCG00000015234)	syt10 (ENSLOCG00000015235)	ppfibp1b (ENSLOCG00000015237) ##31	REP15 (ENSLOCG00000017894) #32	cyb5r3 (ENSLOCG00000015246)	si:dkey-222f8.3 (ENSLOCG00000015248)	POLR3B (ENSLOCG00000015249)	rfx4 (ENSLOCG00000015258)	ric8b (ENSLOCG00000015262)	ENSLOCG00000015265
Reedfish	MODERN SPECIES		washc3 (ENSECRG00000005692)	dram1 (ENSECRG00000005683)	gnptab (ENSECRG00000005649)	chpt1 (ENSECRG00000005630)	mybpc1 (ENSECRG00000005173)	spic (ENSECRG00000005061)	arl1 (ENSECRG00000005016)	UTP20 (ENSECRG00000004980)	ENSECRG00000004958	SLC5A8 (ENSECRG00000004938)	ANO4 (ENSECRG00000004910)	ENSECRG00000004896	GAS2L3 (ENSECRG00000004881)	nr1h4 (ENSECRG00000004858)	slc17a8 (ENSECRG00000004827)	fgfr1op2 (ENSECRG00000006300) #22	TM7SF3 (ENSECRG00000006285) #24	ENSECRG00000006270	med21 (ENSECRG00000006263) #25	stk38l (ENSECRG00000006253) #28	ENSECRG00000006236	si:ch211-245j22.3 (ENSECRG00000006217)	syt10 (ENSECRG00000006205)	ENSECRG00000006194	ppfibp1b (ENSECRG00000006162) ##31	REP15 (ENSECRG00000006151) #32	cyb5r3 (ENSECRG00000006143)	endouc (ENSECRG00000006132)	POLR3B (ENSECRG00000006087)	rfx4 (ENSECRG00000006058)	ric8b (ENSECRG00000006043)
Elephant shark	MODERN SPECIES	1524	POLR3B (ENSCMIG00000013840)	endouc (ENSCMIG00000013822)	cyb5r3 (ENSCMIG00000013728)	REP15 (ENSCMIG00000013710) #32	ENSCMIG00000013026 ##31	ENSCMIG00000012816	ENSCMIG00000012811	ENSCMIG00000012808	TSHB (ENSCMIG00000012805)	UTP20 (ENSCMIG00000012734)	SLC5A8 (ENSCMIG00000012624)	ANO4 (ENSCMIG00000012538)	GAS2L3 (ENSCMIG00000012498)	nr1h4 (ENSCMIG00000012444)	slc17a8 (ENSCMIG00000012395)	fgfr1op2 (ENSCMIG00000012385) #22	TM7SF3 (ENSCMIG00000012366) #24	med21 (ENSCMIG00000012361) #25	stk38l (ENSCMIG00000012330) #28	ENSCMIG00000012322	arl1 (ENSCMIG00000012315)	ENSCMIG00000012307	mybpc1 (ENSCMIG00000011645)	CHPT1 (ENSCMIG00000011518)	gnptab (ENSCMIG00000011481)	DRAM1 (ENSCMIG00000011465)	washc3 (ENSCMIG00000011463)	nup37 (ENSCMIG00000011451)	parpbp (ENSCMIG00000011442)	IGF1 (ENSCMIG00000011437)	th2 (ENSCMIG00000011400)
Ciona	ANCESTRAL SPECIES	96													ENSGT00390000005708	ENSGT00950000183202.a	ENSGT01050000244894.a.a.b	ENSGT00390000018003.b #22	ENSGT00550000074856	ENSGT00950000183100.C	ENSGT00940000167329.b
Ciona savignyi	MODERN SPECIES	56													ENSCSAVG00000003888	ENSCSAVG00000003893	ENSCSAVG00000004027	ENSCSAVG00000004161 #22	ENSCSAVG00000004224	ENSCSAVG00000004362	ENSCSAVG00000004368	ENSCSAVG00000004609	ENSCSAVG00000004619	ENSCSAVG00000004687	ENSCSAVG00000004898	ENSCSAVG00000004932	ENSCSAVG00000004933	ENSCSAVG00000004936	ENSCSAVG00000004940	ENSCSAVG00000004942	ENSCSAVG00000004956	ENSCSAVG00000004959	ENSCSAVG00000005081
Ciona intestinalis	MODERN SPECIES	13	ENSCING00000001827	ENSCING00000017896	ENSCING00000023944	ENSCING00000014236	ENSCING00000010130	ENSCING00000004639	ENSCING00000004637	ENSCING00000004612	ENSCING00000004611	ENSCING00000004609	ENSCING00000015798	ENSCING00000004605	ENSCING00000021468	ENSCING00000004590	ENSCING00000004588	ENSCING00000004586 #22	ENSCING00000018568	ENSCING00000014250	ENSCING00000004581	ENSCING00000020928	ENSCING00000004570	ENSCING00000004565	ENSCING00000004554	ENSCING00000014255	ENSCING00000021271	ENSCING00000020362	ENSCING00000020200	ENSCING00000021977	ENSCING00000014256	ENSCING00000004543	ENSCING00000024472
Chordata	ANCESTRAL SPECIES																	ENSGT00390000018003.a ##22
Vertebrata	ANCESTRAL SPECIES																	ENSGT00390000018003.a ##22
Gnathostomata	ANCESTRAL SPECIES	612												ENSGT00940000158152	ENSGT00970000193609	ENSGT00390000003368	ENSGT00940000163318	ENSGT00390000018003.a ##22	ENSGT00390000016950
Elephant shark	MODERN SPECIES	1574	ENSCMIG00000009984	ENSCMIG00000009986	ENSCMIG00000009990	ENSCMIG00000009992	cd53 (ENSCMIG00000009993)	ENSCMIG00000009996	ENSCMIG00000009998	KLHL12 (ENSCMIG00000010000)	adipor1a (ENSCMIG00000010006)	mrpl16 (ENSCMIG00000010011)	tshb (ENSCMIG00000010012)	ENSCMIG00000010020	ENSCMIG00000010024	ENSCMIG00000010029	ENSCMIG00000010040	ENSCMIG00000010042 ##22	csde1 (ENSCMIG00000010075)	ENSCMIG00000010187	ENSCMIG00000010189	ENSCMIG00000010191	ENSCMIG00000010192	tmem9 (ENSCMIG00000010193)	ENSCMIG00000010198	ENSCMIG00000010201	ENSCMIG00000010234	mib1 (ENSCMIG00000010323)	ENSCMIG00000010342	RBBP8 (ENSCMIG00000010347)	ebag9 (ENSCMIG00000010348)	SYBU (ENSCMIG00000010350)	KCNV1 (ENSCMIG00000010352)
Euteleostomi	ANCESTRAL SPECIES	246										ENSGT00940000158152	ENSGT00940000157504	ENSGT00390000007725.A.b	ENSGT00940000165906	ENSGT00390000003368	ENSGT00940000163318	ENSGT00390000018003.a ##22	ENSGT00390000016950	ENSGT00950000182839.B.a.b ##15	ENSGT00940000158947	ENSGT00950000183011.c.a.a	ENSGT00950000182931.B.a.b	ENSGT00390000014494	ENSGT00940000156361.B	ENSGT00940000157665	ENSGT00940000158083
Sarcopterygii	ANCESTRAL SPECIES	233									ENSGT00390000007725.A.b	ENSGT00940000157504	ENSGT00940000164224	ENSGT00940000158152	ENSGT00940000165906	ENSGT00390000003368	ENSGT00940000163318	ENSGT00390000018003.a ##22	ENSGT00390000016950	ENSGT00950000182839.B.a.b ##15	ENSGT00940000158947	ENSGT00950000183011.c.a.a	ENSGT00950000182931.B.a.b	ENSGT00390000014494	ENSGT00940000156361.B	ENSGT00940000157665	ENSGT00940000158083
Tetrapoda	ANCESTRAL SPECIES	33										ENSGT00390000007725.A.b	ENSGT00940000157504	ENSGT00940000158152	ENSGT00970000193609	ENSGT00390000003368	ENSGT00940000163318	ENSGT00390000018003.a ##22	ENSGT00390000016950	ENSGT00940000158947	ENSGT00950000183011.c.a.a	ENSGT00950000182931.B.a.b	ENSGT00390000014494	ENSGT00940000156361.B	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b	ENSGT00940000156496
Amniota	ANCESTRAL SPECIES	26											ENSGT00390000007725.A.b	ENSGT00940000157504	ENSGT00940000158152	ENSGT00390000003368	ENSGT00940000163318	ENSGT00390000018003.a ##22	ENSGT00390000016950	ENSGT00940000158947	ENSGT00950000183011.c.a.a	ENSGT00950000182931.B.a.b	ENSGT00390000014494	ENSGT00940000156361.B	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b
Sauria	ANCESTRAL SPECIES	24											ENSGT00390000007725.A.b	ENSGT00940000157504	ENSGT00940000158152	ENSGT00390000003368	ENSGT00940000163318	ENSGT00390000018003.a ##22	ENSGT00390000016950	ENSGT00940000158947	ENSGT00950000183011.c.a.a	ENSGT00950000182931.B.a.b	ENSGT00390000014494	ENSGT00940000156361.B	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00950000182977.A.h	ENSGT00940000160958	ENSGT00390000001969.a
Archelosauria	ANCESTRAL SPECIES	22										ENSGT00390000007725.A.b	ENSGT00940000157504	ENSGT00940000158152	ENSGT00390000003368	ENSGT00960000189360	ENSGT00940000163318	ENSGT00390000018003.a ##22	ENSGT00390000016950	ENSGT00940000158947	ENSGT00950000183011.c.a.a	ENSGT00950000182931.B.a.b	ENSGT00390000014494	ENSGT00940000156361.B	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00950000182977.A.h	ENSGT00940000160958	ENSGT00390000001969.a
Cryptodira	ANCESTRAL SPECIES	27										ENSGT00390000007725.A.b	ENSGT00940000157504	ENSGT00940000158152	ENSGT00390000003368	ENSGT00960000189360	ENSGT00940000163318	ENSGT00390000018003.a ##22	ENSGT00390000016950	ENSGT00940000158947	ENSGT00950000183011.c.a.a	ENSGT00950000182931.B.a.b	ENSGT00390000014494	ENSGT00940000156361.B	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00950000182977.A.h	ENSGT01000000218223	ENSGT00940000160958
Testudinoidea	ANCESTRAL SPECIES	33	ENSGT00940000154184.B	ENSGT01030000234639.A.b.c.a.a.a.b	ENSGT01050000244888.b.b.a.a	ENSGT00940000161412	ENSGT01100000263572.b	ENSGT01100000263572.a.a.a.b	ENSGT01100000263494.a.a.b	ENSGT01100000263572.a.b.b	ENSGT00390000007725.A.b	ENSGT00940000157504	ENSGT00940000164224	ENSGT00940000158152	ENSGT00390000003368	ENSGT00960000189360	ENSGT00940000163318	ENSGT00390000018003.a ##22	ENSGT00390000016950	ENSGT00940000158947	ENSGT00950000183011.c.a.a	ENSGT00950000182931.B.a.b	ENSGT00390000014494	ENSGT00940000156361.B	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00950000182977.A.h	ENSGT00940000160958	ENSGT00390000001969.a
Emydidae	ANCESTRAL SPECIES	25	ENSGT00940000154184.B	ENSGT01030000234639.A.b.c.a.a.a.b	ENSGT01050000244888.b.b.a.a	ENSGT00940000161412	ENSGT01100000263572.b	ENSGT01100000263499.a.b	ENSGT01100000263572.a.a.a.b	ENSGT01100000263494.a.a.b	ENSGT01100000263572.a.b.b	ENSGT00390000007725.A.b	ENSGT00940000157504	ENSGT00940000158152	ENSGT00390000003368	ENSGT00960000189360	ENSGT00940000163318	ENSGT00390000018003.a ##22	ENSGT00390000016950	ENSGT00940000158947	ENSGT00950000183011.c.a.a	ENSGT00950000182931.B.a.b	ENSGT00390000014494	ENSGT00940000156361.B	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00950000182977.A.h	ENSGT00940000160958	ENSGT00390000001969.a
painted turtle	MODERN SPECIES	774	LRRC55 (ENSCPBG00000016802)	ENSCPBG00000016799	ENSCPBG00000016798	ENSCPBG00000016797	ENSCPBG00000016788	ENSCPBG00000016787	NGF (ENSCPBG00000016785)	ENSCPBG00000016782	TSPAN2 (ENSCPBG00000016778)	ENSCPBG00000016776	TSHB (ENSCPBG00000016773)	ENSCPBG00000016770	ENSCPBG00000016767	ENSCPBG00000016759	ENSCPBG00000016569	SIKE1 (ENSCPBG00000016558) ##22	CSDE1 (ENSCPBG00000016547)	NRAS (ENSCPBG00000016544)	AMPD1 (ENSCPBG00000016467)	DENND2C (ENSCPBG00000016454)	BCAS2 (ENSCPBG00000016450)	TRIM33 (ENSCPBG00000015502)	SYT6 (ENSCPBG00000015463)	OLFML3 (ENSCPBG00000015461)	HIPK1 (ENSCPBG00000015455)	DCLRE1B (ENSCPBG00000015450)	AP4B1 (ENSCPBG00000015447)	BCL2L15 (ENSCPBG00000015446)	ENSCPBG00000015444	PTPN22 (ENSCPBG00000015443)	RSBN1 (ENSCPBG00000015442)
Three-toed box turtle	MODERN SPECIES	404	ENSTMTG00000021989	SSRP1 (ENSTMTG00000021869)	ENSTMTG00000021838	APLNR (ENSTMTG00000021833)	LRRC55 (ENSTMTG00000021831)	ENSTMTG00000021824	ENSTMTG00000021819	ENSTMTG00000021817	OR5AP2 (ENSTMTG00000021812)	NGF (ENSTMTG00000021809)	ENSTMTG00000021805	TSHB (ENSTMTG00000021802)	ENSTMTG00000021796	ENSTMTG00000021789	ENSTMTG00000021785	SIKE1 (ENSTMTG00000021782) ##22	CSDE1 (ENSTMTG00000021766)	NRAS (ENSTMTG00000021757)	AMPD1 (ENSTMTG00000021700)	DENND2C (ENSTMTG00000021563)	BCAS2 (ENSTMTG00000021536)	TRIM33 (ENSTMTG00000021183)	SYT6 (ENSTMTG00000021122)	OLFML3 (ENSTMTG00000021117)	HIPK1 (ENSTMTG00000021108)	DCLRE1B (ENSTMTG00000021091)	AP4B1 (ENSTMTG00000021079)	BCL2L15 (ENSTMTG00000021065)	ENSTMTG00000021060	ENSTMTG00000021052	RSBN1 (ENSTMTG00000021045)
Testudinidae	ANCESTRAL SPECIES	42	ENSGT00940000154184.B	ENSGT01030000234639.A.b.c.a.a.a.b	ENSGT01050000244888.b.b.a.a	ENSGT00940000161412	ENSGT01100000263572.b	ENSGT01100000263572.a.a.a.b	ENSGT01100000263494.a.a.b	ENSGT01100000263572.a.b.b	ENSGT00940000163951.d.b	ENSGT00390000007725.A.b	ENSGT00940000157504	ENSGT00940000164224	ENSGT00940000158152	ENSGT00390000003368	ENSGT00940000163318	ENSGT00390000018003.a ##22	ENSGT00390000016950	ENSGT00940000158947	ENSGT00950000183011.c.a.a	ENSGT00950000182931.B.a.b	ENSGT00390000014494	ENSGT00940000156361.B	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00950000182977.A.h	ENSGT00940000160958	ENSGT00390000001969.a
Goode s thornscrub tortoise	MODERN SPECIES	18	TNKS1BP1 (ENSGEVG00005007598)	ENSGEVG00005007563	APLNR (ENSGEVG00005007549)	LRRC55 (ENSGEVG00005007530)	ENSGEVG00005007504	ENSGEVG00005007436	ENSGEVG00005007412	ENSGEVG00005007357	ENSGEVG00005007339	NGF (ENSGEVG00005007328)	TSPAN2 (ENSGEVG00005007314)	ENSGEVG00005007289	TSHB (ENSGEVG00005007270)	ENSGEVG00005007251	ENSGEVG00005007104	SIKE1 (ENSGEVG00005007054) ##22	CSDE1 (ENSGEVG00005006984)	NRAS (ENSGEVG00005006933)	AMPD1 (ENSGEVG00005005560)	DENND2C (ENSGEVG00005005008)	BCAS2 (ENSGEVG00005004966)	TRIM33 (ENSGEVG00005004119)	SYT6 (ENSGEVG00005003867)	OLFML3 (ENSGEVG00005003830)	HIPK1 (ENSGEVG00005003814)	DCLRE1B (ENSGEVG00005003798)	AP4B1 (ENSGEVG00005003783)	BCL2L15 (ENSGEVG00005003775)	PTPN22 (ENSGEVG00005003735)	RSBN1 (ENSGEVG00005003706)	PHTF1 (ENSGEVG00005003592)
Abingdon island giant tortoise	MODERN SPECIES	2566														ENSCABG00000002953	ENSCABG00000002957	SIKE1 (ENSCABG00000003018) ##22	CSDE1 (ENSCABG00000003064)	NRAS (ENSCABG00000003846)	AMPD1 (ENSCABG00000003868)	DENND2C (ENSCABG00000004302)	BCAS2 (ENSCABG00000004308)	TRIM33 (ENSCABG00000004346)	SYT6 (ENSCABG00000005657)	OLFML3 (ENSCABG00000005659)	HIPK1 (ENSCABG00000005660)	DCLRE1B (ENSCABG00000005661)	AP4B1 (ENSCABG00000005663)	BCL2L15 (ENSCABG00000005665)	ENSCABG00000005667	PTPN22 (ENSCABG00000005668)	RSBN1 (ENSCABG00000005670)
Archosauria	ANCESTRAL SPECIES	23										ENSGT00390000007725.A.b	ENSGT00940000157504	ENSGT00940000158152	ENSGT00390000003368	ENSGT00960000189360	ENSGT00940000163318	ENSGT00390000018003.a ##22	ENSGT00390000016950	ENSGT00940000158947	ENSGT00950000183011.c.a.a	ENSGT00950000182931.B.a.b	ENSGT00390000014494	ENSGT00940000156361.B	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT01000000218223	ENSGT00940000160958	ENSGT00390000001969.a
Aves	ANCESTRAL SPECIES	25										ENSGT00390000007725.A.b	ENSGT00940000157504	ENSGT00940000158152	ENSGT00390000003368	ENSGT00960000189360	ENSGT00940000163318	ENSGT00390000018003.a ##22	ENSGT00390000016950	ENSGT00940000158947	ENSGT00950000183011.c.a.a	ENSGT00950000182931.B.a.b	ENSGT00390000014494	ENSGT00940000156361.B	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b
Neognathae	ANCESTRAL SPECIES	24										ENSGT00390000007725.A.b	ENSGT00940000157504	ENSGT00940000158152	ENSGT00390000003368	ENSGT00960000189360	ENSGT00940000163318	ENSGT00390000018003.a ##22	ENSGT00390000016950	ENSGT00940000158947	ENSGT00950000183011.c.a.a	ENSGT00950000182931.B.a.b	ENSGT00390000014494	ENSGT00940000156361.B	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b
Neognathae_b	ANCESTRAL SPECIES	24											ENSGT00390000007725.A.b	ENSGT00940000157504	ENSGT00940000158152	ENSGT00390000003368	ENSGT00940000163318	ENSGT00390000018003.a ##22	ENSGT00390000016950	ENSGT00940000158947	ENSGT00950000183011.c.a.a	ENSGT00950000182931.B.a.b	ENSGT00390000014494	ENSGT00940000156361.B	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00990000204522	ENSGT00390000001969.a
Neognathae_c	ANCESTRAL SPECIES	27											ENSGT00390000007725.A.b	ENSGT00940000157504	ENSGT00940000158152	ENSGT00390000003368	ENSGT00940000163318	ENSGT00390000018003.a ##22	ENSGT00390000016950	ENSGT00940000158947	ENSGT00950000183011.c.a.a	ENSGT00950000182931.B.a.b	ENSGT00390000014494	ENSGT00940000156361.B	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00990000204522	ENSGT00390000001969.a
Golden eagle	MODERN SPECIES	16										NGF (ENSACCG00020010075)	TSPAN2 (ENSACCG00020010084)	TSHB (ENSACCG00020010093)	ENSACCG00020010102	ENSACCG00020010117	ENSACCG00020010130	SIKE1 (ENSACCG00020010139) ##22	CSDE1 (ENSACCG00020010163)	NRAS (ENSACCG00020010180)	AMPD1 (ENSACCG00020010348)	DENND2C (ENSACCG00020010480)	BCAS2 (ENSACCG00020010526)	TRIM33 (ENSACCG00020010602)	SYT6 (ENSACCG00020010651)	OLFML3 (ENSACCG00020010659)	HIPK1 (ENSACCG00020010684)	DCLRE1B (ENSACCG00020010713)	AP4B1 (ENSACCG00020010726)	BCL2L15 (ENSACCG00020010737)	ENSACCG00020010753	ENSACCG00020010773	RSBN1 (ENSACCG00020010821)
Kakapo	MODERN SPECIES	30											NGF (ENSSHBG00005016603)	TSPAN2 (ENSSHBG00005016607)	TSHB (ENSSHBG00005016613)	ENSSHBG00005016615	ENSSHBG00005016633	SIKE1 (ENSSHBG00005016838) ##22	CSDE1 (ENSSHBG00005016848)	NRAS (ENSSHBG00005016877)	AMPD1 (ENSSHBG00005016888)	DENND2C (ENSSHBG00005016926)	BCAS2 (ENSSHBG00005016969)	TRIM33 (ENSSHBG00005016976)	SYT6 (ENSSHBG00005016996)	PPP1R15B (ENSSHBG00005017000)	PIK3C2B (ENSSHBG00005017093)	ENSSHBG00005018459	ENSSHBG00005018462	LRRN2 (ENSSHBG00005018464)	NFASC (ENSSHBG00005018471)	CNTN2 (ENSSHBG00005018482)	TMEM81 (ENSSHBG00005018486)
Passeriformes	ANCESTRAL SPECIES	21	ENSGT00940000153544.a ##28	ENSGT00970000193695	ENSGT00910000144115.a	ENSGT00940000159918.a.b	ENSGT00940000160379	ENSGT00390000014270	ENSGT00940000163908.f	ENSGT00940000163908.e.b	ENSGT00390000000020.a	ENSGT00940000161251	ENSGT00940000153394.c.a.g.a.b	ENSGT00390000007725.A.b	ENSGT00940000157504	ENSGT00940000158152	ENSGT00940000163318	ENSGT00390000018003.a ##22	ENSGT00390000016950	ENSGT00940000158947	ENSGT00950000183011.c.a.a	ENSGT00950000182931.B.a.b	ENSGT00390000014494	ENSGT00940000156361.B	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00940000160958	ENSGT00990000204522	ENSGT00390000001969.a	ENSGT00390000011648.b
Great tit	MODERN SPECIES	19	KCTD20 (ENSPMJG00000011962)	STK38 (ENSPMJG00000011963) ##28	ENSPMJG00000011964	SRSF3 (ENSPMJG00000011965)	ENSPMJG00000011967	ENSPMJG00000011968	C6orf89 (ENSPMJG00000011969)	ENSPMJG00000011970	MTCH1 (ENSPMJG00000011973)	FGD2 (ENSPMJG00000011974)	ENSPMJG00000011975	NGF (ENSPMJG00000011976)	TSPAN2 (ENSPMJG00000011978)	TSHB (ENSPMJG00000011979)	ENSPMJG00000011980	SIKE1 (ENSPMJG00000011981) ##22	CSDE1 (ENSPMJG00000011982)	ENSPMJG00000011983	ENSPMJG00000011984	AMPD1 (ENSPMJG00000011985)	DENND2C (ENSPMJG00000011986)	BCAS2 (ENSPMJG00000011987)	TRIM33 (ENSPMJG00000011988)	SYT6 (ENSPMJG00000011989)	OLFML3 (ENSPMJG00000011990)	HIPK1 (ENSPMJG00000011991)	DCLRE1B (ENSPMJG00000011992)	AP4B1 (ENSPMJG00000011993)	PTPN22 (ENSPMJG00000011994)	RSBN1 (ENSPMJG00000011995)	PHTF1 (ENSPMJG00000011996)
Passeriformes_d	ANCESTRAL SPECIES	21	ENSGT00390000007975.b	ENSGT00940000153544.a ##28	ENSGT00970000193695	ENSGT00910000144115.a	ENSGT00940000159918.a.b	ENSGT00940000160379	ENSGT00390000014270	ENSGT00940000163908.f	ENSGT00390000000020.a	ENSGT00940000161251	ENSGT00940000153394.c.a.g.a.b	ENSGT00390000007725.A.b	ENSGT00940000157504	ENSGT00940000158152	ENSGT00940000163318	ENSGT00390000018003.a ##22	ENSGT00390000016950	ENSGT00940000158947	ENSGT00950000183011.c.a.a	ENSGT00950000182931.B.a.b	ENSGT00390000014494	ENSGT00940000156361.B	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00940000160958	ENSGT00990000204522	ENSGT00390000001969.a	ENSGT00390000011648.b
Passeriformes_g	ANCESTRAL SPECIES	24	ENSGT00940000162211	ENSGT00390000007975.b	ENSGT00940000153544.a ##28	ENSGT00910000144115.a	ENSGT00940000159918.a.b	ENSGT00940000160379	ENSGT00390000014270	ENSGT00940000163908.f	ENSGT00390000000020.a	ENSGT00940000161251	ENSGT00940000153394.c.a.g.a.b	ENSGT00390000007725.A.b	ENSGT00940000157504	ENSGT00940000158152	ENSGT00940000163318	ENSGT00390000018003.a ##22	ENSGT00390000016950	ENSGT00940000158947	ENSGT00950000183011.c.a.a	ENSGT00950000182931.B.a.b	ENSGT00390000014494	ENSGT00940000156361.B	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000164219.a.b.a	ENSGT00950000182835.d.a	ENSGT00390000009989	ENSGT00390000017874	ENSGT00950000182977.A.g.a	ENSGT00960000189564	ENSGT00940000161667
Passeroidea	ANCESTRAL SPECIES	24	ENSGT00940000162211	ENSGT00390000007975.b	ENSGT00940000153544.a ##28	ENSGT00970000193695	ENSGT00940000160379	ENSGT00390000014270	ENSGT00940000163908.e.a	ENSGT00940000163908.e.b	ENSGT00390000000020.a	ENSGT00940000161251	ENSGT00940000153394.c.a.g.a.b	ENSGT00390000007725.A.b	ENSGT00940000157504	ENSGT00940000158152	ENSGT00940000163318	ENSGT00390000018003.a ##22	ENSGT00390000016950	ENSGT00940000158947	ENSGT00950000183011.c.a.a	ENSGT00950000182931.B.a.b	ENSGT00390000014494	ENSGT00940000156361.B	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000164219.a.b.a	ENSGT00950000182835.d.a	ENSGT00390000009989	ENSGT00390000017874	ENSGT00950000182977.A.g.a	ENSGT00960000189564	ENSGT00940000161667
Zebra finch	MODERN SPECIES	19	STK38 (ENSTGUG00000000925) ##28	ENSTGUG00000026443	SRSF3 (ENSTGUG00000000928)	ENSTGUG00000026382	C6orf89 (ENSTGUG00000000933)	ENSTGUG00000000936	ENSTGUG00000027197	ENSTGUG00000000937	MTCH1 (ENSTGUG00000000939)	FGD2 (ENSTGUG00000000944)	ENSTGUG00000000954	NGF (ENSTGUG00000000958)	TSPAN2 (ENSTGUG00000018819)	TSHB (ENSTGUG00000000962)	ENSTGUG00000000964	SIKE1 (ENSTGUG00000000967) ##22	CSDE1 (ENSTGUG00000000972)	NRAS (ENSTGUG00000000988)	AMPD1 (ENSTGUG00000000993)	DENND2C (ENSTGUG00000001005)	BCAS2 (ENSTGUG00000001012)	TRIM33 (ENSTGUG00000001017)	SYT6 (ENSTGUG00000001034)	OLFML3 (ENSTGUG00000023277)	ENSTGUG00000001052	YOD1 (ENSTGUG00000001071)	ENSTGUG00000025461	C1orf116 (ENSTGUG00000027989)	ENSTGUG00000023027	ENSTGUG00000027431	PIGR (ENSTGUG00000001073)
Flycatcher	MODERN SPECIES	18	STK38 (ENSFALG00000003210) ##28	ENSFALG00000003220	SRSF3 (ENSFALG00000003234)	CDKN1A (ENSFALG00000003246)	ENSFALG00000003264	C6orf89 (ENSFALG00000003285)	ENSFALG00000023248	MTCH1 (ENSFALG00000028215)	FGD2 (ENSFALG00000003341)	ENSFALG00000003367	ENSFALG00000023060	NGF (ENSFALG00000025177)	TSPAN2 (ENSFALG00000026812)	TSHB (ENSFALG00000003387)	ENSFALG00000003389	SIKE1 (ENSFALG00000023219) ##22	CSDE1 (ENSFALG00000003407)	NRAS (ENSFALG00000003415)	AMPD1 (ENSFALG00000003420)	DENND2C (ENSFALG00000003425)	BCAS2 (ENSFALG00000003431)	TRIM33 (ENSFALG00000003445)	SYT6 (ENSFALG00000003461)	OLFML3 (ENSFALG00000028315)	HIPK1 (ENSFALG00000003475)	AP4B1 (ENSFALG00000003489)	RSBN1 (ENSFALG00000003503)	PHTF1 (ENSFALG00000003510)	ENSFALG00000003517	BRPF3 (ENSFALG00000003524)	MAPK13 (ENSFALG00000003537)
Galloanserae	ANCESTRAL SPECIES	35										ENSGT00390000007725.A.b	ENSGT00940000157504	ENSGT00940000158152	ENSGT00390000003368	ENSGT00960000189360	ENSGT00940000163318	ENSGT00390000018003.a ##22	ENSGT00390000016950	ENSGT00940000158947	ENSGT00950000183011.c.a.a	ENSGT00950000182931.B.a.b	ENSGT00390000014494	ENSGT00940000156361.B	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b
Phasianidae	ANCESTRAL SPECIES	22	ENSGT00390000013228	ENSGT00940000155806	ENSGT00940000160792	ENSGT00940000153185.a.a.b	ENSGT00390000008767.d	ENSGT00940000160911	ENSGT00950000183017.b.b.a.b	ENSGT00940000156676	ENSGT00950000183077.b	ENSGT00390000000705	ENSGT00390000007725.A.b	ENSGT00940000157504	ENSGT00940000158152	ENSGT00390000003368	ENSGT00940000163318	ENSGT00390000018003.a ##22	ENSGT00390000016950.a	ENSGT00940000158947	ENSGT00950000183011.c.a.a	ENSGT00950000182931.B.a.b	ENSGT00390000014494	ENSGT00940000156361.B	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b
Phasianidae_b	ANCESTRAL SPECIES	22	ENSGT00390000013228	ENSGT00940000155806	ENSGT00940000160792.d	ENSGT00940000153185.a.a.b	ENSGT00390000008767.d	ENSGT00940000160911	ENSGT00950000183017.b.b.a.b	ENSGT00940000156676	ENSGT00950000183077.b	ENSGT00390000000705	ENSGT00390000007725.A.b	ENSGT00940000157504	ENSGT00940000158152	ENSGT00390000003368	ENSGT00940000163318	ENSGT00390000018003.a ##22	ENSGT00390000016950.a	ENSGT00940000158947	ENSGT00950000183011.c.a.a	ENSGT00950000182931.B.a.b	ENSGT00390000014494	ENSGT00940000156361.B	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b
Chicken	MODERN SPECIES	18	TAF11 (ENSGALG00010026051)	ANKS1A (ENSGALG00010026001)	ENSGALG00010025941	SCUBE3 (ENSGALG00010025917)	RPL10A (ENSGALG00010025904)	ZNF76 (ENSGALG00010025887)	DEF6 (ENSGALG00010025847)	PPARD (ENSGALG00010027545)	ENSGALG00010027527	FANCE (ENSGALG00010027520)	NGF (ENSGALG00010025423)	TSPAN2 (ENSGALG00010025398)	TSHB (ENSGALG00010025394)	SYCP1 (ENSGALG00010025384)	ENSGALG00010025369	SIKE1 (ENSGALG00010025365) ##22	CSDE1 (ENSGALG00010025544)	NRAS (ENSGALG00010025512)	AMPD1 (ENSGALG00010025504)	DENND2C (ENSGALG00010025485)	BCAS2 (ENSGALG00010025458)	TRIM33 (ENSGALG00010025452)	SYT6 (ENSGALG00010025434)	OLFML3 (ENSGALG00010025357)	HIPK1 (ENSGALG00010025348)	DCLRE1B (ENSGALG00010027405)	AP4B1 (ENSGALG00010027402)	BCL2L15 (ENSGALG00010027395)	PTPN22 (ENSGALG00010027911)	RSBN1 (ENSGALG00010027894)	PHTF1 (ENSGALG00010027256)
Japanese quail	MODERN SPECIES	18	SPDEF (ENSCJPG00005017897)	ILRUN (ENSCJPG00005017896)	BLTP3A (ENSCJPG00005017862)	ENSCJPG00005017861	ANKS1A (ENSCJPG00005017800)	SCUBE3 (ENSCJPG00005017799)	RPL10A (ENSCJPG00005017798)	ENSCJPG00005017797	DEF6 (ENSCJPG00005017796)	PPARD (ENSCJPG00005017795)	FANCE (ENSCJPG00005017794)	NGF (ENSCJPG00005017793)	TSPAN2 (ENSCJPG00005017792)	TSHB (ENSCJPG00005017791)	ENSCJPG00005017774	SIKE1 (ENSCJPG00005017773) ##22	CSDE1 (ENSCJPG00005017511)	NRAS (ENSCJPG00005017510)	AMPD1 (ENSCJPG00005017458)	DENND2C (ENSCJPG00005017456)	BCAS2 (ENSCJPG00005017455)	TRIM33 (ENSCJPG00005017361)	SYT6 (ENSCJPG00005017360)	OLFML3 (ENSCJPG00005017359)	HIPK1 (ENSCJPG00005017327)	DCLRE1B (ENSCJPG00005017326)	AP4B1 (ENSCJPG00005017325)	BCL2L15 (ENSCJPG00005017324)	ENSCJPG00005017323	RSBN1 (ENSCJPG00005017322)	PHTF1 (ENSCJPG00005016848)
Anatidae	ANCESTRAL SPECIES	42										ENSGT00390000007725.A.b	ENSGT00940000157504	ENSGT00940000158152	ENSGT00390000003368	ENSGT00960000189360	ENSGT00940000163318	ENSGT00390000018003.a ##22	ENSGT00390000016950	ENSGT00940000158947	ENSGT00950000183011.c.a.a	ENSGT00950000182931.B.a.b	ENSGT00390000014494	ENSGT00940000156361.B	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b
Pink-footed goose	MODERN SPECIES	294									ENSABRG00000011611	ENSABRG00000011613	NGF (ENSABRG00000011615)	TSPAN2 (ENSABRG00000011617)	TSHB (ENSABRG00000011624)	ENSABRG00000011629	ENSABRG00000011645	SIKE1 (ENSABRG00000011649) ##22	CSDE1 (ENSABRG00000011674)	NRAS (ENSABRG00000011713)	AMPD1 (ENSABRG00000011787)	DENND2C (ENSABRG00000012690)	BCAS2 (ENSABRG00000012706)	TRIM33 (ENSABRG00000012717)	SYT6 (ENSABRG00000012751)	OLFML3 (ENSABRG00000012758)	HIPK1 (ENSABRG00000012762)	DCLRE1B (ENSABRG00000012788)	ENSABRG00000012793	ENSABRG00000012795	BCL2L15 (ENSABRG00000012799)	PTPN22 (ENSABRG00000012804)	PHTF1 (ENSABRG00000012821)
Australian saltwater crocodile	MODERN SPECIES	53	ENSCPRG00005014319	ZNF76 (ENSCPRG00005014331)	DEF6 (ENSCPRG00005014336)	PPARD (ENSCPRG00005014343)	ENSCPRG00005014350	FANCE (ENSCPRG00005014369)	ENSCPRG00005014386	MICAL1 (ENSCPRG00005014392)	ENSCPRG00005014400	NGF (ENSCPRG00005014402)	TSPAN2 (ENSCPRG00005014404)	ENSCPRG00005014408	TSHB (ENSCPRG00005014414)	ENSCPRG00005014420	ENSCPRG00005014428	SIKE1 (ENSCPRG00005014439) ##22	CSDE1 (ENSCPRG00005014495)	NRAS (ENSCPRG00005014778)	AMPD1 (ENSCPRG00005014786)	DENND2C (ENSCPRG00005014788)	TRIM33 (ENSCPRG00005014810)	SYT6 (ENSCPRG00005014983)	OLFML3 (ENSCPRG00005014989)	HIPK1 (ENSCPRG00005014993)	DCLRE1B (ENSCPRG00005015002)	AP4B1 (ENSCPRG00005015006)	BCL2L15 (ENSCPRG00005015013)	ENSCPRG00005015015	ENSCPRG00005015020	ENSCPRG00005015024	RSBN1 (ENSCPRG00005015033)
Lepidosauria	ANCESTRAL SPECIES	6	ENSGT00940000157067	ENSGT00940000156777	ENSGT00440000039564.a.a	ENSGT01030000234588.b.a	ENSGT00390000005256	ENSGT00940000154709.a.a	ENSGT00940000156735	ENSGT00940000162073	ENSGT00390000000819.b	ENSGT00390000007725.A.b	ENSGT00940000157504	ENSGT00940000158152	ENSGT00970000193609	ENSGT00390000003368	ENSGT00940000163318	ENSGT00390000018003.a ##22	ENSGT00390000016950	ENSGT00940000158947	ENSGT00950000183011.c.a.a	ENSGT00950000182931.B.a.b	ENSGT00390000014494	ENSGT00940000156361.B	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00950000182977.A.h	ENSGT00940000160958	ENSGT00390000001969.a
Episquamata	ANCESTRAL SPECIES	1	ENSGT00940000157067	ENSGT00940000156777	ENSGT00440000039564.a.a	ENSGT01030000234588.b.a	ENSGT00390000005256	ENSGT00940000154709.a.a	ENSGT00940000156735	ENSGT00940000162073	ENSGT00390000000819.b	ENSGT00390000007725.A.b	ENSGT00940000157504	ENSGT00940000158152	ENSGT00970000193609	ENSGT00390000003368	ENSGT00940000163318	ENSGT00390000018003.a ##22	ENSGT00390000016950	ENSGT00940000158947	ENSGT00950000183011.c.a.a	ENSGT00950000182931.B.a.b	ENSGT00390000014494	ENSGT00940000156361.B	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00950000182977.A.h	ENSGT00940000160958	ENSGT00390000001969.a
Laterata	ANCESTRAL SPECIES	3	ENSGT00940000156777	ENSGT00440000039564.a.a	ENSGT01030000234588.b.a	ENSGT00390000005256	ENSGT00940000154709.a.a	ENSGT00940000156735	ENSGT00940000162073	ENSGT00390000000819.b	ENSGT00390000007725.A.b	ENSGT00940000157504	ENSGT00940000158152	ENSGT00970000193609	ENSGT00390000003368	ENSGT00960000191930	ENSGT00940000163318	ENSGT00390000018003.a ##22	ENSGT00390000016950	ENSGT00940000158947	ENSGT00950000183011.c.a.a	ENSGT00950000182931.B.a.b	ENSGT00390000014494	ENSGT00940000156361.B	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00950000182977.A.h	ENSGT00940000160958	ENSGT00390000001969.a
Common wall lizard	MODERN SPECIES	14	PHLDA3 (ENSPMRG00000003529)	TNNI1 (ENSPMRG00000003517)	LAD1 (ENSPMRG00000003512)	TNNT2 (ENSPMRG00000003502)	PKP1 (ENSPMRG00000003493)	ENSPMRG00000003482	TMEM9 (ENSPMRG00000003466)	NGF (ENSPMRG00000003457)	TSPAN2 (ENSPMRG00000003453)	TSHB (ENSPMRG00000003447)	ENSPMRG00000003438	ENSPMRG00000003434	ENSPMRG00000003428	ENSPMRG00000003424	ENSPMRG00000003399	SIKE1 (ENSPMRG00000003391) ##22	CSDE1 (ENSPMRG00000003356)	NRAS (ENSPMRG00000003341)	AMPD1 (ENSPMRG00000003326)	DENND2C (ENSPMRG00000003300)	BCAS2 (ENSPMRG00000003279)	TRIM33 (ENSPMRG00000003206)	SYT6 (ENSPMRG00000003176)	OLFML3 (ENSPMRG00000003164)	HIPK1 (ENSPMRG00000003141)	ENSPMRG00000003128	DCLRE1B (ENSPMRG00000003115)	AP4B1 (ENSPMRG00000003095)	BCL2L15 (ENSPMRG00000003076)	ENSPMRG00000003060	PTPN22 (ENSPMRG00000003036)
Argentine black and white tegu	MODERN SPECIES	28	ENSSMRG00000003921	TNNI1 (ENSSMRG00000003922)	LAD1 (ENSSMRG00000003929)	TNNT2 (ENSSMRG00000003935)	PKP1 (ENSSMRG00000003987)	ENSSMRG00000004001	TMEM9 (ENSSMRG00000004014)	NGF (ENSSMRG00000004028)	TSPAN2 (ENSSMRG00000004037)	ENSSMRG00000004046	TSHB (ENSSMRG00000004051)	ADCY10 (ENSSMRG00000004063)	ENSSMRG00000004081	ENSSMRG00000004088	ENSSMRG00000004090	SIKE1 (ENSSMRG00000004095) ##22	CSDE1 (ENSSMRG00000004102)	NRAS (ENSSMRG00000004105)	AMPD1 (ENSSMRG00000004108)	DENND2C (ENSSMRG00000004114)	BCAS2 (ENSSMRG00000004124)	TRIM33 (ENSSMRG00000004126)	SYT6 (ENSSMRG00000004132)	OLFML3 (ENSSMRG00000004139)	HIPK1 (ENSSMRG00000004142)	DCLRE1B (ENSSMRG00000004153)	AP4B1 (ENSSMRG00000004155)	ENSSMRG00000004163	ENSSMRG00000004164	PTPN22 (ENSSMRG00000004169)	RSBN1 (ENSSMRG00000004191)
Toxicofera	ANCESTRAL SPECIES	1	ENSGT00940000166065	ENSGT00940000157067	ENSGT00940000156777	ENSGT00440000039564.a.a	ENSGT01030000234588.b.a	ENSGT00390000005256	ENSGT00940000154709.a.a	ENSGT00940000156735	ENSGT00940000169516	ENSGT00390000000819.b	ENSGT00390000007725.A.b	ENSGT00940000157504	ENSGT00940000158152	ENSGT00390000003368	ENSGT00940000163318	ENSGT00390000018003.a ##22	ENSGT00390000016950	ENSGT00940000158947	ENSGT00950000183011.c.a.a	ENSGT00950000182931.B.a.b	ENSGT00390000014494	ENSGT00940000156361.B	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b
Elapidae	ANCESTRAL SPECIES	1	ENSGT00940000166065	ENSGT00940000157067	ENSGT00940000156777	ENSGT00440000039564.a.a	ENSGT01030000234588.b.a	ENSGT00390000005256	ENSGT00940000154709.a.a	ENSGT00940000156735	ENSGT00940000169516	ENSGT00390000000819.b	ENSGT00390000007725.A.b.b	ENSGT00940000157504	ENSGT00940000158152	ENSGT00390000003368	ENSGT00940000163318	ENSGT00390000018003.a ##22	ENSGT00390000016950	ENSGT00940000158947	ENSGT00950000183011.c.a.a	ENSGT00950000182931.B.a.b	ENSGT00390000014494	ENSGT00940000156361.B	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b
Elapidae_a	ANCESTRAL SPECIES	3	ENSGT00940000157067	ENSGT00940000156777	ENSGT00440000039564.a.a	ENSGT01030000234588.b.a	ENSGT00390000005256	ENSGT00940000154709.a.a	ENSGT00940000156735	ENSGT00940000169516	ENSGT00390000000819.b.o	ENSGT00390000000819.b.p	ENSGT00390000007725.A.b.b	ENSGT00940000157504	ENSGT00940000158152	ENSGT00390000003368	ENSGT00940000163318	ENSGT00390000018003.a ##22	ENSGT00390000016950	ENSGT00940000158947	ENSGT00950000183011.c.a.a	ENSGT00950000182931.B.a.b	ENSGT00390000014494	ENSGT00940000156361.B	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00960000192735	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b
Acanthophiinae	ANCESTRAL SPECIES	2	ENSGT00940000157067	ENSGT00940000156777	ENSGT00440000039564.a.a	ENSGT01030000234588.b.a	ENSGT00390000005256	ENSGT00940000154709.a.a	ENSGT00940000156735	ENSGT00940000169516	ENSGT00390000000819.b.o	ENSGT00390000000819.b.p	ENSGT00390000007725.A.b.b	ENSGT00940000157504	ENSGT00940000158152	ENSGT00390000003368	ENSGT00940000163318	ENSGT00390000018003.a ##22	ENSGT00390000016950	ENSGT00940000158947	ENSGT00950000183011.c.a.a	ENSGT00950000182931.B.a.b	ENSGT00390000014494	ENSGT00940000156361.B	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00960000192735	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b
Eastern brown snake	MODERN SPECIES	57	CSRP1 (ENSPTXG00000007698)	PHLDA3 (ENSPTXG00000007697)	TNNI1 (ENSPTXG00000007695)	LAD1 (ENSPTXG00000007693)	TNNT2 (ENSPTXG00000007691)	PKP1 (ENSPTXG00000007688)	ENSPTXG00000007683	ENSPTXG00000007682	ENSPTXG00000007681	ENSPTXG00000007680	TSPAN2 (ENSPTXG00000007679)	ENSPTXG00000007678	TSHB (ENSPTXG00000007677)	ENSPTXG00000007676	ENSPTXG00000007675	SIKE1 (ENSPTXG00000007673) ##22	CSDE1 (ENSPTXG00000007667)	NRAS (ENSPTXG00000007664)	AMPD1 (ENSPTXG00000007663)	DENND2C (ENSPTXG00000007651)	BCAS2 (ENSPTXG00000007646)	TRIM33 (ENSPTXG00000007644)	SYT6 (ENSPTXG00000007641)	OLFML3 (ENSPTXG00000007638)	HIPK1 (ENSPTXG00000007635)	DCLRE1B (ENSPTXG00000007632)	AP4B1 (ENSPTXG00000007627)	ENSPTXG00000007625	RSBN1 (ENSPTXG00000007621)	PHTF1 (ENSPTXG00000007617)	MAGI3 (ENSPTXG00000007612)
Mainland tiger snake	MODERN SPECIES	69										TSPAN2 (ENSNSUG00000013602)	ENSNSUG00000013603	TSHB (ENSNSUG00000013605)	ENSNSUG00000013615	ENSNSUG00000013617	ENSNSUG00000013620	SIKE1 (ENSNSUG00000013624) ##22	CSDE1 (ENSNSUG00000013629)	NRAS (ENSNSUG00000013637)	AMPD1 (ENSNSUG00000013666)	DENND2C (ENSNSUG00000013700)	BCAS2 (ENSNSUG00000013702)	ENSNSUG00000013704	ENSNSUG00000013706	SYT6 (ENSNSUG00000013707)	OLFML3 (ENSNSUG00000013709)	HIPK1 (ENSNSUG00000013710)	DCLRE1B (ENSNSUG00000013711)	AP4B1 (ENSNSUG00000013722)	ENSNSUG00000013724	ENSNSUG00000013726	RSBN1 (ENSNSUG00000013728)
Blue-lipped sea krait	MODERN SPECIES	8081																SIKE1 (ENSLLTG00000004902) ##22	CSDE1 (ENSLLTG00000004300)
Indian cobra	MODERN SPECIES	2	PPP1R12B (ENSNNAG00000017552)	CSRP1 (ENSNNAG00000017598)	PHLDA3 (ENSNNAG00000017603)	TNNI1 (ENSNNAG00000017605)	LAD1 (ENSNNAG00000017615)	TNNT2 (ENSNNAG00000017619)	PKP1 (ENSNNAG00000017633)	ENSNNAG00000017642	TMEM9 (ENSNNAG00000004791)	NGF (ENSNNAG00000004800)	TSPAN2 (ENSNNAG00000004813)	ENSNNAG00000004824	TSHB (ENSNNAG00000004836)	ENSNNAG00000004842	ENSNNAG00000004854	SIKE1 (ENSNNAG00000004872) ##22	CSDE1 (ENSNNAG00000004895)	NRAS (ENSNNAG00000005069)	AMPD1 (ENSNNAG00000005107)	DENND2C (ENSNNAG00000005192)	BCAS2 (ENSNNAG00000005273)	TRIM33 (ENSNNAG00000005363)	SYT6 (ENSNNAG00000006099)	OLFML3 (ENSNNAG00000006122)	HIPK1 (ENSNNAG00000006138)	DCLRE1B (ENSNNAG00000006167)	AP4B1 (ENSNNAG00000006177)	BCL2L15 (ENSNNAG00000006208)	PTPN22 (ENSNNAG00000006216)	RSBN1 (ENSNNAG00000006255)	PHTF1 (ENSNNAG00000006285)
Lizard	MODERN SPECIES	3	TNNI1 (ENSACAG00000003672)	LAD1 (ENSACAG00000028869)	TNNT2 (ENSACAG00000003593)	PKP1 (ENSACAG00000003509)	ENSACAG00000003494	TMEM9 (ENSACAG00000003471)	NGF (ENSACAG00000003464)	ENSACAG00000041146	TSPAN2 (ENSACAG00000003435)	ENSACAG00000003406	TSHB (ENSACAG00000039387)	ENSACAG00000032973	ENSACAG00000043536	ENSACAG00000038160	ENSACAG00000003336	SIKE1 (ENSACAG00000003294) ##22	ENSACAG00000036675	CSDE1 (ENSACAG00000003120)	NRAS (ENSACAG00000003090)	AMPD1 (ENSACAG00000002927)	ENSACAG00000039775	DENND2C (ENSACAG00000002773)	BCAS2 (ENSACAG00000043298)	TRIM33 (ENSACAG00000002617)	ENSACAG00000037879	SYT6 (ENSACAG00000002524)	ENSACAG00000036998	OLFML3 (ENSACAG00000045151)	HIPK1 (ENSACAG00000002309)	DCLRE1B (ENSACAG00000044026)	AP4B1 (ENSACAG00000002204)
tuatara	MODERN SPECIES	567	ENSSPUG00000008259	ENSSPUG00000008264	ENSSPUG00000008269	CSRP1 (ENSSPUG00000008280)	PHLDA3 (ENSSPUG00000008286)	TNNI1 (ENSSPUG00000008293)	TNNT2 (ENSSPUG00000008315)	PKP1 (ENSSPUG00000008330)	TMEM9 (ENSSPUG00000008350)	NGF (ENSSPUG00000008362)	TSPAN2 (ENSSPUG00000008367)	ENSSPUG00000008374	TSHB (ENSSPUG00000008387)	ENSSPUG00000008400	ENSSPUG00000008449	SIKE1 (ENSSPUG00000008647) ##22	CSDE1 (ENSSPUG00000008714)	NRAS (ENSSPUG00000008958)
Mammalia	ANCESTRAL SPECIES	80											ENSGT00390000007725.A.b	ENSGT00940000157504	ENSGT00940000158152	ENSGT00390000003368	ENSGT00940000163318	ENSGT00390000018003.a ##22	ENSGT00390000016950	ENSGT00940000158947	ENSGT00950000183011.c.a.a	ENSGT00950000182931.B.a.b	ENSGT00390000014494	ENSGT00940000156361.B	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b
Platypus	MODERN SPECIES	18	ENSOANG00000003576	ENSOANG00000036941	NYAP2 (ENSOANG00000011214)	IRS1 (ENSOANG00000041838)	RHBDD1 (ENSOANG00000011213)	COL4A4 (ENSOANG00000011208)	COL4A3 (ENSOANG00000011207)	MFF (ENSOANG00000005205)	TM4SF20 (ENSOANG00000002732)	AGFG1 (ENSOANG00000004524)	ENSOANG00000044311	TSPAN2 (ENSOANG00000004522)	TSHB (ENSOANG00000004521)	ENSOANG00000004520	ENSOANG00000004519	SIKE1 (ENSOANG00000014599) ##22	CSDE1 (ENSOANG00000003346)	NRAS (ENSOANG00000041833)	AMPD1 (ENSOANG00000004517)	DENND2C (ENSOANG00000004516)	ENSOANG00000004515	TRIM33 (ENSOANG00000004514)	SYT6 (ENSOANG00000041111)	OLFML3 (ENSOANG00000045486)	HIPK1 (ENSOANG00000050845)	AP4B1 (ENSOANG00000002999)	PTPN22 (ENSOANG00000002998)	RSBN1 (ENSOANG00000002642)	MAGI3 (ENSOANG00000002645)	LRIG2 (ENSOANG00000002648)	SLC16A1 (ENSOANG00000036530)
Theria	ANCESTRAL SPECIES	3	ENSGT01030000234540.E	ENSGT00960000186961	ENSGT00940000155177.b	ENSGT00510000049596	ENSGT00940000154840.b	ENSGT01050000244827.B	ENSGT00940000160364	ENSGT00940000162602	ENSGT00390000019377.b	ENSGT00390000012496.a	ENSGT00390000007725.A.b	ENSGT00940000157504	ENSGT00940000158152	ENSGT00390000003368	ENSGT00940000163318	ENSGT00390000018003.a ##22	ENSGT00390000016950	ENSGT00940000158947	ENSGT00950000183011.c.a.a	ENSGT00950000182931.B.a.b	ENSGT00390000014494	ENSGT00940000156361.B	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b
Marsupialia	ANCESTRAL SPECIES	2	ENSGT00940000158367	ENSGT00960000186961	ENSGT00940000155177.b	ENSGT00510000049596	ENSGT00940000154840.b	ENSGT01050000244827.B	ENSGT00940000160364	ENSGT00940000162602	ENSGT00390000019377.b	ENSGT00390000012496.a	ENSGT00390000007725.A.b	ENSGT00940000157504	ENSGT00940000158152	ENSGT00390000003368	ENSGT00940000163318	ENSGT00390000018003.a ##22	ENSGT00390000016950	ENSGT00940000158947.x	ENSGT00950000183011.c.a.a	ENSGT00950000182931.B.a.b	ENSGT00390000014494	ENSGT00940000156361.B	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b
Opossum	MODERN SPECIES	1	ENSMODG00000005074	IGSF3 (ENSMODG00000005063)	ENSMODG00000039584	ATP1A1 (ENSMODG00000005035)	MAB21L3 (ENSMODG00000004947)	SLC22A15 (ENSMODG00000004931)	NHLH2 (ENSMODG00000023228)	CASQ2 (ENSMODG00000004914)	ENSMODG00000023229	NGF (ENSMODG00000004863)	ENSMODG00000004846	TSPAN2 (ENSMODG00000004828)	TSHB (ENSMODG00000004806)	SYCP1 (ENSMODG00000004800)	ENSMODG00000004721	SIKE1 (ENSMODG00000004700) ##22	CSDE1 (ENSMODG00000004685)	NRAS (ENSMODG00000004590)	AMPD1 (ENSMODG00000004578)	DENND2C (ENSMODG00000000348)	BCAS2 (ENSMODG00000000367)	TRIM33 (ENSMODG00000000443)	SYT6 (ENSMODG00000000628)	HIPK1 (ENSMODG00000000665)	DCLRE1B (ENSMODG00000000672)	AP4B1 (ENSMODG00000000699)	BCL2L15 (ENSMODG00000000706)	ENSMODG00000000719	RSBN1 (ENSMODG00000000742)	PHTF1 (ENSMODG00000000803)	MAGI3 (ENSMODG00000000874)
Marsupialia_b	ANCESTRAL SPECIES	1	ENSGT00940000158367	ENSGT00960000186961	ENSGT00940000155177.b	ENSGT00510000049596	ENSGT00940000154840.b	ENSGT01050000244827.B	ENSGT00940000160364	ENSGT00940000162602	ENSGT00390000019377.b	ENSGT00390000012496.a	ENSGT00390000007725.A.b	ENSGT00940000157504	ENSGT00940000158152	ENSGT00390000003368	ENSGT00940000163318	ENSGT00390000018003.a ##22	ENSGT00390000016950	ENSGT00940000158947.x	ENSGT00950000183011.c.a.a	ENSGT00950000182931.B.a.b	ENSGT00390000014494	ENSGT00940000156361.B	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b.e
Tasmanian devil	MODERN SPECIES	3	IGSF3 (ENSSHAG00000027689)	ENSSHAG00000017292	ATP1A1 (ENSSHAG00000016979)	MAB21L3 (ENSSHAG00000022094)	SLC22A15 (ENSSHAG00000015912)	ENSSHAG00000026266	NHLH2 (ENSSHAG00000015472)	CASQ2 (ENSSHAG00000014881)	VANGL1 (ENSSHAG00000014752)	NGF (ENSSHAG00000013026)	ENSSHAG00000011855	TSPAN2 (ENSSHAG00000032135)	TSHB (ENSSHAG00000011393)	SYCP1 (ENSSHAG00000010670)	ENSSHAG00000010518	SIKE1 (ENSSHAG00000026566) ##22	AMPD1 (ENSSHAG00000009444)	CSDE1 (ENSSHAG00000009831)	ENSSHAG00000008467	DENND2C (ENSSHAG00000008636)	TRIM33 (ENSSHAG00000005991)	SYT6 (ENSSHAG00000014204)	OLFML3 (ENSSHAG00000031891)	HIPK1 (ENSSHAG00000013450)	DCLRE1B (ENSSHAG00000013211)	AP4B1 (ENSSHAG00000013155)	BCL2L15 (ENSSHAG00000013069)	PTPN22 (ENSSHAG00000026786)	RSBN1 (ENSSHAG00000030446)	PHTF1 (ENSSHAG00000011937)	MAGI3 (ENSSHAG00000010442)
Diprotodontia	ANCESTRAL SPECIES	5	ENSGT00940000158367	ENSGT00960000186961	ENSGT00940000155177.b	ENSGT00510000049596	ENSGT00940000154840.b	ENSGT01050000244827.B	ENSGT00940000160364	ENSGT00940000162602	ENSGT00390000019377.b	ENSGT00390000012496.a	ENSGT00390000007725.A.b	ENSGT00940000157504	ENSGT00940000158152	ENSGT00390000003368	ENSGT00940000163318	ENSGT00390000018003.a ##22	ENSGT00390000016950	ENSGT00940000158947.x	ENSGT00950000183011.c.a.a	ENSGT00950000182931.B.a.b	ENSGT00390000014494	ENSGT00940000156361.B	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b.e
Wallaby	MODERN SPECIES	9773															SPTAN1 (ENSMEUG00000008987)	SIKE1 (ENSMEUG00000009060) ##22	DYNC2I2 (ENSMEUG00000009073)
Diprotodontia_a	ANCESTRAL SPECIES	6	ENSGT00940000158367	ENSGT00960000186961	ENSGT00940000155177.b	ENSGT00510000049596	ENSGT00940000154840.b	ENSGT01050000244827.B	ENSGT00940000160364	ENSGT00940000162602	ENSGT00390000019377.b	ENSGT00390000012496.a	ENSGT00390000007725.A.b	ENSGT00940000157504	ENSGT00940000158152	ENSGT00390000003368	ENSGT00940000163318	ENSGT00390000018003.a ##22	ENSGT00390000016950	ENSGT00940000158947.x	ENSGT00950000183011.c.a.a	ENSGT00950000182931.B.a.b	ENSGT00390000014494	ENSGT00940000156361.B	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b.e
Common wonbat	MODERN SPECIES	1021	ENSVURG00010008439	ATP1A1 (ENSVURG00010008458)	ENSVURG00010008506	MAB21L3 (ENSVURG00010008509)	SLC22A15 (ENSVURG00010008519)	NHLH2 (ENSVURG00010008530)	CASQ2 (ENSVURG00010008538)	VANGL1 (ENSVURG00010008571)	ENSVURG00010008585	NGF (ENSVURG00010008601)	ENSVURG00010008604	TSPAN2 (ENSVURG00010008617)	TSHB (ENSVURG00010008697)	ENSVURG00010008707	ENSVURG00010008750	SIKE1 (ENSVURG00010009209) ##22	CSDE1 (ENSVURG00010009236)	NRAS (ENSVURG00010009675)	AMPD1 (ENSVURG00010009682)	DENND2C (ENSVURG00010009700)	BCAS2 (ENSVURG00010009712)
koala	MODERN SPECIES	4	ENSPCIG00000031241	IGSF3 (ENSPCIG00000005858)	ENSPCIG00000005860	ATP1A1 (ENSPCIG00000004151)	MAB21L3 (ENSPCIG00000010827)	SLC22A15 (ENSPCIG00000033801)	NHLH2 (ENSPCIG00000031517)	CASQ2 (ENSPCIG00000001270)	VANGL1 (ENSPCIG00000001310)	NGF (ENSPCIG00000028939)	ENSPCIG00000022566	TSPAN2 (ENSPCIG00000022568)	TSHB (ENSPCIG00000022570)	SYCP1 (ENSPCIG00000022572)	ENSPCIG00000022577	SIKE1 (ENSPCIG00000022581) ##22	CSDE1 (ENSPCIG00000022587)	NRAS (ENSPCIG00000022594)	AMPD1 (ENSPCIG00000022674)	DENND2C (ENSPCIG00000025107)	BCAS2 (ENSPCIG00000025108)	TRIM33 (ENSPCIG00000003619)	SYT6 (ENSPCIG00000013436)	OLFML3 (ENSPCIG00000014301)	HIPK1 (ENSPCIG00000022995)	DCLRE1B (ENSPCIG00000031622)	AP4B1 (ENSPCIG00000020805)	BCL2L15 (ENSPCIG00000035032)	ENSPCIG00000032515	RSBN1 (ENSPCIG00000030831)	PHTF1 (ENSPCIG00000002828)
Eutheria	ANCESTRAL SPECIES		ENSGT00940000158367	ENSGT01030000234540.E	ENSGT00940000155177.b	ENSGT00510000049596	ENSGT00940000154840.b	ENSGT01050000244827.B	ENSGT00940000160364	ENSGT00940000162602	ENSGT00390000019377.b	ENSGT00390000012496.a	ENSGT00390000007725.A.b	ENSGT00940000157504	ENSGT00940000158152	ENSGT00390000003368	ENSGT00940000163318	ENSGT00390000018003.a ##22	ENSGT00390000016950	ENSGT00940000158947	ENSGT00950000183011.c.a.a	ENSGT00950000182931.B.a.b	ENSGT00390000014494	ENSGT00940000156361.B	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b
Boreoeutheria	ANCESTRAL SPECIES		ENSGT00940000158367	ENSGT01030000234540.E	ENSGT00940000155177.b	ENSGT00510000049596	ENSGT00940000154840.b	ENSGT01050000244827.B	ENSGT00940000160364	ENSGT00940000162602	ENSGT00390000019377.b	ENSGT00390000012496.a	ENSGT00390000007725.A.b	ENSGT00940000157504	ENSGT00940000158152	ENSGT00390000003368	ENSGT00940000163318	ENSGT00390000018003.a ##22	ENSGT00390000016950	ENSGT00940000158947	ENSGT00950000183011.c.a.a	ENSGT00950000182931.B.a.b	ENSGT00390000014494	ENSGT00940000156361.B	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b
Euarchontoglires	ANCESTRAL SPECIES		ENSGT00940000158367	ENSGT01030000234540.E	ENSGT00940000155177.b	ENSGT00510000049596	ENSGT00940000154840.b	ENSGT01050000244827.B	ENSGT00940000160364	ENSGT00940000162602	ENSGT00390000019377.b	ENSGT00390000012496.a	ENSGT00390000007725.A.b	ENSGT00940000157504	ENSGT00940000158152	ENSGT00390000003368	ENSGT00940000163318	ENSGT00390000018003.a ##22	ENSGT00390000016950	ENSGT00940000158947	ENSGT00950000183011.c.a.a	ENSGT00950000182931.B.a.b	ENSGT00390000014494	ENSGT00940000156361.B	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b
Euarchontoglires_A	ANCESTRAL SPECIES		ENSGT00940000161722	ENSGT00940000158367	ENSGT01030000234540.E	ENSGT00940000155177.b	ENSGT00940000154840.b	ENSGT01050000244827.B	ENSGT00940000160364	ENSGT00940000162602	ENSGT00390000019377.b	ENSGT00390000012496.a	ENSGT00390000007725.A.b	ENSGT00940000157504	ENSGT00940000158152	ENSGT00390000003368	ENSGT00940000163318	ENSGT00390000018003.a ##22	ENSGT00390000016950	ENSGT00940000158947	ENSGT00950000183011.c.a.a	ENSGT00950000182931.B.a.b	ENSGT00390000014494	ENSGT00940000156361.B	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b
Tree shrew	MODERN SPECIES	1568																SIKE1 (ENSTBEG00000007772) ##22
Glires	ANCESTRAL SPECIES		ENSGT00940000161722	ENSGT00940000158367	ENSGT01030000234540.E	ENSGT00940000155177.b	ENSGT00940000154840.b	ENSGT01050000244827.B	ENSGT00940000160364	ENSGT00940000162602	ENSGT00390000019377.b	ENSGT00390000012496.a	ENSGT00390000007725.A.b	ENSGT00940000157504	ENSGT00940000158152	ENSGT00390000003368.d	ENSGT00940000163318	ENSGT00390000018003.a ##22	ENSGT00390000016950	ENSGT00940000158947	ENSGT00950000183011.c.a.a	ENSGT00950000182931.B.a.b	ENSGT00390000014494	ENSGT00940000156361.B	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b
Rodentia	ANCESTRAL SPECIES		ENSGT00940000161722	ENSGT00940000158367	ENSGT01030000234540.E	ENSGT00940000155177.b	ENSGT00940000154840.b	ENSGT01050000244827.B	ENSGT00940000160364	ENSGT00940000162602	ENSGT00390000019377.b	ENSGT00390000012496.a	ENSGT00390000007725.A.b	ENSGT00940000157504	ENSGT00940000158152	ENSGT00390000003368.d	ENSGT00940000163318	ENSGT00390000018003.a ##22	ENSGT00390000016950	ENSGT00940000158947	ENSGT00950000183011.c.a.a	ENSGT00950000182931.B.a.b	ENSGT00390000014494	ENSGT00940000156361.B	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b
Rodentia_B	ANCESTRAL SPECIES		ENSGT00940000161722	ENSGT00940000158367	ENSGT01030000234540.E	ENSGT00940000155177.b	ENSGT00940000154840.b	ENSGT01050000244827.B	ENSGT00940000160364	ENSGT00940000162602	ENSGT00390000019377.b	ENSGT00390000012496.a	ENSGT00390000007725.A.b	ENSGT00940000157504	ENSGT00940000158152	ENSGT00390000003368.d	ENSGT00940000163318	ENSGT00390000018003.a ##22	ENSGT00390000016950	ENSGT00940000158947	ENSGT00950000183011.c.a.a	ENSGT00950000182931.B.a.b	ENSGT00390000014494	ENSGT00940000156361.B	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b
Kangaroo rat	MODERN SPECIES	397	Vtcn1 (ENSDORG00000013786)	Ttf2 (ENSDORG00000013781)	Cd101 (ENSDORG00000013779)	Ptgfrn (ENSDORG00000013777)	Igsf3 (ENSDORG00000010085)	Atp1a1 (ENSDORG00000028959)	Mab21l3 (ENSDORG00000010259)	ENSDORG00000028402	ENSDORG00000010026	Casq2 (ENSDORG00000013122)	Vangl1 (ENSDORG00000013118)	Ngf (ENSDORG00000025001)	Tspan2 (ENSDORG00000003239)	Tshb (ENSDORG00000003238)	ENSDORG00000027896	Sike1 (ENSDORG00000005162) ##22	Csde1 (ENSDORG00000011609)	Nras (ENSDORG00000025267)	Ampd1 (ENSDORG00000005377)	Dennd2c (ENSDORG00000014222)	Bcas2 (ENSDORG00000014220)	Trim33 (ENSDORG00000005438)	Syt6 (ENSDORG00000012083)	Olfml3 (ENSDORG00000010313)	Hipk1 (ENSDORG00000010311)	ENSDORG00000014015	Ap4b1 (ENSDORG00000002983)	ENSDORG00000008804	ENSDORG00000030194	Rsbn1 (ENSDORG00000014322)	Phtf1 (ENSDORG00000007042)
Myomorpha	ANCESTRAL SPECIES	12	ENSGT00940000161722	ENSGT00940000158367	ENSGT01030000234540.E	ENSGT00940000155177.b	ENSGT00940000154840.b	ENSGT01050000244827.B	ENSGT00940000160364	ENSGT00940000162602	ENSGT00390000019377.b	ENSGT00390000012496.a	ENSGT00390000007725.A.b	ENSGT00940000157504	ENSGT00940000158152	ENSGT00390000003368.d	ENSGT00940000163318	ENSGT00390000018003.a ##22	ENSGT00390000016950	ENSGT00940000158947	ENSGT00950000183011.c.a.a	ENSGT00950000182931.B.a.b	ENSGT00390000014494	ENSGT00940000156361.B	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b
Muroidea	ANCESTRAL SPECIES	6	ENSGT00940000161722	ENSGT00940000158367	ENSGT01030000234540.E	ENSGT00940000155177.b	ENSGT00940000154840.b	ENSGT01050000244827.B	ENSGT00940000160364	ENSGT00940000162602	ENSGT00390000019377.b	ENSGT00390000012496.a	ENSGT00390000007725.A.b	ENSGT00940000157504	ENSGT00940000158152	ENSGT00390000003368.d	ENSGT00940000163318	ENSGT00390000018003.a ##22	ENSGT00390000016950	ENSGT00940000158947	ENSGT00950000183011.c.a.a	ENSGT00950000182931.B.a.b	ENSGT00390000014494	ENSGT00940000156361.B	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b
Muroidea_A	ANCESTRAL SPECIES	5	ENSGT00940000161722	ENSGT00940000158367	ENSGT01030000234540.E	ENSGT00940000155177.b	ENSGT00940000154840.b	ENSGT01050000244827.B	ENSGT00940000160364	ENSGT00940000162602	ENSGT00390000019377.b	ENSGT00390000012496.a	ENSGT00390000007725.A.b	ENSGT00940000157504	ENSGT00940000158152	ENSGT00390000003368.d	ENSGT00940000163318	ENSGT00390000018003.a ##22	ENSGT00390000016950	ENSGT00940000158947	ENSGT00950000183011.c.a.a	ENSGT00950000182931.B.a.b	ENSGT00390000014494	ENSGT00940000156361.B	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b
Cricetidae	ANCESTRAL SPECIES	6	ENSGT00940000161722	ENSGT00940000158367	ENSGT01030000234540.E	ENSGT00940000155177.b	ENSGT00940000154840.b	ENSGT01050000244827.B	ENSGT00940000160364	ENSGT00940000162602	ENSGT00390000019377.b	ENSGT00390000012496.a	ENSGT00390000007725.A.b	ENSGT00940000157504	ENSGT00940000158152	ENSGT00390000003368.d	ENSGT00940000163318	ENSGT00390000018003.a ##22	ENSGT00390000016950	ENSGT00940000158947	ENSGT00950000183011.c.a.a	ENSGT00950000182931.B.a.b	ENSGT00390000014494	ENSGT00940000156361.B	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b
Cricetinae	ANCESTRAL SPECIES	12	ENSGT00940000161722	ENSGT00940000158367	ENSGT01030000234540.E	ENSGT00940000155177.b	ENSGT00940000154840.b	ENSGT01050000244827.B	ENSGT00940000160364	ENSGT00940000162602	ENSGT00390000019377.b	ENSGT00390000012496.a	ENSGT00390000007725.A.b	ENSGT00940000157504	ENSGT00940000158152	ENSGT00390000003368.d	ENSGT00940000163318	ENSGT00390000018003.a ##22	ENSGT00390000016950	ENSGT00940000158947	ENSGT00950000183011.c.a.a	ENSGT00950000182931.B.a.b	ENSGT00390000014494	ENSGT00940000156361.B	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175.i	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b
Chinese hamster chok1gshd	MODERN SPECIES	66	Ptgfrn (ENSCGRG00001022148)	Cd2 (ENSCGRG00001019348)	Igsf3 (ENSCGRG00001017829)	Atp1a1 (ENSCGRG00001024330)	Mab21l3 (ENSCGRG00001018373)	Slc22a15 (ENSCGRG00001018525)	Nhlh2 (ENSCGRG00001009328)	Casq2 (ENSCGRG00001013746)	Vangl1 (ENSCGRG00001022127)	Ngf (ENSCGRG00001000250)	Tspan2 (ENSCGRG00001014655)	Tshb (ENSCGRG00001012202)	ENSCGRG00001006375	Sycp1 (ENSCGRG00001010102)	Nr1h5 (ENSCGRG00001022882)	Sike1 (ENSCGRG00001023509) ##22	ENSCGRG00001011859	ENSCGRG00001016833	Nras (ENSCGRG00001020093)	Ampd1 (ENSCGRG00001014246)	Dennd2c (ENSCGRG00001009814)	Bcas2 (ENSCGRG00001021315)	Trim33 (ENSCGRG00001014166)	Syt6 (ENSCGRG00001021814)	Olfml3 (ENSCGRG00001021257)	Hipk1 (ENSCGRG00001014954)	Dclre1b (ENSCGRG00001007757)	Ap4b1 (ENSCGRG00001011109)	Bcl2l15 (ENSCGRG00001020305)	Ptpn22 (ENSCGRG00001010081)	Rsbn1 (ENSCGRG00001018807)
Golden Hamster	MODERN SPECIES	681	Cd2 (ENSMAUG00000012774)	Igsf3 (ENSMAUG00000013987)	ENSMAUG00000017849	Atp1a1 (ENSMAUG00000017136)	ENSMAUG00000008452	Mab21l3 (ENSMAUG00000009568)	Slc22a15 (ENSMAUG00000010758)	Nhlh2 (ENSMAUG00000016936)	Casq2 (ENSMAUG00000000284)	Vangl1 (ENSMAUG00000009480)	ENSMAUG00000002276	Tspan2 (ENSMAUG00000004539)	Tshb (ENSMAUG00000005156)	Sycp1 (ENSMAUG00000000328)	Nr1h5 (ENSMAUG00000010803)	Sike1 (ENSMAUG00000012482) ##22	Csde1 (ENSMAUG00000014031)	Nras (ENSMAUG00000019927)	Ampd1 (ENSMAUG00000001096)	Dennd2c (ENSMAUG00000013289)	Bcas2 (ENSMAUG00000013855)	Trim33 (ENSMAUG00000014592)	Syt6 (ENSMAUG00000017513)	Olfml3 (ENSMAUG00000000373)	Hipk1 (ENSMAUG00000004979)	ENSMAUG00000003242	Ap4b1 (ENSMAUG00000009537)	Bcl2l15 (ENSMAUG00000012761)	ENSMAUG00000013405	Rsbn1 (ENSMAUG00000014143)	Phtf1 (ENSMAUG00000007035)
Cricetidae_B	ANCESTRAL SPECIES	3	ENSGT00940000161722	ENSGT00940000158367	ENSGT01030000234540.E	ENSGT00940000155177.b	ENSGT00940000154840.b	ENSGT01050000244827.B	ENSGT00940000160364	ENSGT00940000162602	ENSGT00390000019377.b	ENSGT00390000012496.a	ENSGT00390000007725.A.b	ENSGT00940000157504	ENSGT00940000158152	ENSGT00390000003368.d	ENSGT00940000163318	ENSGT00390000018003.a ##22	ENSGT00390000016950	ENSGT00940000158947	ENSGT00950000183011.c.a.a	ENSGT00950000182931.B.a.b	ENSGT00390000014494	ENSGT00940000156361.B	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b
Northern American deer mouse	MODERN SPECIES	19	Cd101 (ENSPEMG00000008402)	Ptgfrn (ENSPEMG00000009682)	Cd2 (ENSPEMG00000018550)	Igsf3 (ENSPEMG00000011916)	Atp1a1 (ENSPEMG00000010999)	Mab21l3 (ENSPEMG00000023035)	Slc22a15 (ENSPEMG00000023603)	Nhlh2 (ENSPEMG00000025983)	Casq2 (ENSPEMG00000012959)	Vangl1 (ENSPEMG00000026640)	Ngf (ENSPEMG00000001587)	Tspan2 (ENSPEMG00000023387)	Tshb (ENSPEMG00000024182)	Sycp1 (ENSPEMG00000023338)	Nr1h5 (ENSPEMG00000021165)	Sike1 (ENSPEMG00000020550) ##22	Csde1 (ENSPEMG00000020357)	Nras (ENSPEMG00000029639)	Ampd1 (ENSPEMG00000017567)	Dennd2c (ENSPEMG00000002658)	Bcas2 (ENSPEMG00000023530)	Trim33 (ENSPEMG00000011885)	Syt6 (ENSPEMG00000013637)	Olfml3 (ENSPEMG00000010380)	Hipk1 (ENSPEMG00000020639)	Dclre1b (ENSPEMG00000025394)	Ap4b1 (ENSPEMG00000021858)	ENSPEMG00000031377	Bcl2l15 (ENSPEMG00000022471)	Ptpn22 (ENSPEMG00000026650)	Rsbn1 (ENSPEMG00000020974)
Prairie vole	MODERN SPECIES	8	Trim45 (ENSMOCG00000000422)	Ttf2 (ENSMOCG00000008415)	Ptgfrn (ENSMOCG00000020768)	Igsf3 (ENSMOCG00000005813)	Atp1a1 (ENSMOCG00000006963)	Mab21l3 (ENSMOCG00000016617)	ENSMOCG00000020465	Nhlh2 (ENSMOCG00000007572)	Casq2 (ENSMOCG00000014851)	Vangl1 (ENSMOCG00000018281)	Ngf (ENSMOCG00000021179)	Tspan2 (ENSMOCG00000003591)	Tshb (ENSMOCG00000006126)	Sycp1 (ENSMOCG00000009622)	Nr1h5 (ENSMOCG00000012316)	Sike1 (ENSMOCG00000000516) ##22	ENSMOCG00000009367	Csde1 (ENSMOCG00000018960)	Nras (ENSMOCG00000022441)	Ampd1 (ENSMOCG00000010785)	Dennd2c (ENSMOCG00000009830)	Bcas2 (ENSMOCG00000013157)	Trim33 (ENSMOCG00000013853)	Syt6 (ENSMOCG00000017004)	Olfml3 (ENSMOCG00000001104)	Hipk1 (ENSMOCG00000009217)	Dclre1b (ENSMOCG00000014786)	Ap4b1 (ENSMOCG00000002528)	Chil6 (ENSMOCG00000000792)	Dennd2d (ENSMOCG00000020692)	Cept1 (ENSMOCG00000014223)
Murinae	ANCESTRAL SPECIES	5	ENSGT00940000161722	ENSGT00940000158367	ENSGT01030000234540.E	ENSGT00940000155177.b	ENSGT00940000154840.b	ENSGT01050000244827.B	ENSGT00940000160364	ENSGT00940000162602	ENSGT00390000019377.b	ENSGT00390000012496.a	ENSGT00390000007725.A.b	ENSGT00940000157504	ENSGT00940000158152	ENSGT00390000003368.d	ENSGT00940000163318	ENSGT00390000018003.a ##22	ENSGT00390000016950	ENSGT00940000158947	ENSGT00950000183011.c.a.a	ENSGT00950000182931.B.a.b	ENSGT00390000014494	ENSGT00940000156361.B	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b
Mus	ANCESTRAL SPECIES	7	ENSGT00940000161722	ENSGT00940000158367	ENSGT01030000234540.E	ENSGT00940000155177.b	ENSGT00940000154840.b	ENSGT01050000244827.B	ENSGT00940000160364	ENSGT00940000162602	ENSGT00390000019377.b	ENSGT00390000012496.a	ENSGT00390000007725.A.b	ENSGT00940000157504	ENSGT00940000158152	ENSGT00390000003368.d	ENSGT00940000163318	ENSGT00390000018003.a ##22	ENSGT00390000016950	ENSGT00940000158947	ENSGT00950000183011.c.a.a	ENSGT00950000182931.B.a.b	ENSGT00390000014494	ENSGT00940000156361.B	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b
Mus_A	ANCESTRAL SPECIES	9	ENSGT00940000161722	ENSGT00940000158367	ENSGT01030000234540.E	ENSGT00940000155177.b	ENSGT00940000154840.b	ENSGT01050000244827.B	ENSGT00940000160364	ENSGT00940000162602	ENSGT00390000019377.b	ENSGT00390000012496.a	ENSGT00390000007725.A.b	ENSGT00940000157504	ENSGT00940000158152	ENSGT00390000003368.d	ENSGT00940000163318	ENSGT00390000018003.a ##22	ENSGT00390000016950	ENSGT00940000158947	ENSGT00950000183011.c.a.a	ENSGT00950000182931.B.a.b	ENSGT00390000014494	ENSGT00940000156361.B	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b
Mus_B	ANCESTRAL SPECIES	8	ENSGT00940000161722	ENSGT00940000158367	ENSGT01030000234540.E	ENSGT00940000155177.b	ENSGT00940000154840.b	ENSGT01050000244827.B	ENSGT00940000160364	ENSGT00940000162602	ENSGT00390000019377.b	ENSGT00390000012496.a	ENSGT00390000007725.A.b	ENSGT00940000157504	ENSGT00940000158152	ENSGT00390000003368.d	ENSGT00940000163318	ENSGT00390000018003.a ##22	ENSGT00390000016950	ENSGT00940000158947	ENSGT00950000183011.c.a.a	ENSGT00950000182931.B.a.b	ENSGT00390000014494	ENSGT00940000156361.B	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b
Mouse	MODERN SPECIES	12	Cd101 (ENSMUSG00000086564)	Ptgfrn (ENSMUSG00000027864)	Cd2 (ENSMUSG00000027863)	Igsf3 (ENSMUSG00000042035)	Atp1a1 (ENSMUSG00000033161)	Mab21l3 (ENSMUSG00000044313)	Slc22a15 (ENSMUSG00000033147)	Nhlh2 (ENSMUSG00000048540)	Casq2 (ENSMUSG00000027861)	Vangl1 (ENSMUSG00000027860)	Ngf (ENSMUSG00000027859)	Tspan2 (ENSMUSG00000027858)	Tshb (ENSMUSG00000027857)	Sycp1 (ENSMUSG00000027855)	Nr1h5 (ENSMUSG00000048938)	Sike1 (ENSMUSG00000027854) ##22	Csde1 (ENSMUSG00000068823)	Nras (ENSMUSG00000027852)	Ampd1 (ENSMUSG00000070385)	Dennd2c (ENSMUSG00000007379)	Bcas2 (ENSMUSG00000005687)	Trim33 (ENSMUSG00000033014)	Syt6 (ENSMUSG00000027849)	Atg4a-ps (ENSMUSG00000087119)	Olfml3 (ENSMUSG00000027848)	Hipk1 (ENSMUSG00000008730)	Dclre1b (ENSMUSG00000027845)	Ap4b1 (ENSMUSG00000032952)	Bcl2l15 (ENSMUSG00000044165)	Ptpn22 (ENSMUSG00000027843)	Rsbn1 (ENSMUSG00000044098)
Mus_C	ANCESTRAL SPECIES	6	ENSGT00940000161722	ENSGT00940000158367	ENSGT01030000234540.E	ENSGT00940000155177.b	ENSGT00940000154840.b	ENSGT01050000244827.B	ENSGT00940000160364	ENSGT00940000162602	ENSGT00390000019377.b	ENSGT00390000012496.a	ENSGT00390000007725.A.b	ENSGT00940000157504	ENSGT00940000158152	ENSGT00390000003368.d	ENSGT00940000163318	ENSGT00390000018003.a ##22	ENSGT00390000016950	ENSGT00940000158947	ENSGT00950000183011.c.a.a	ENSGT00950000182931.B.a.b	ENSGT00390000014494	ENSGT00940000156361.B	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b
Steppe mouse	MODERN SPECIES	3244										ENSMSIG00000013032	ENSMSIG00000013003	Tspan2 (ENSMSIG00000012946)	Tshb (ENSMSIG00000012914)	Sycp1 (ENSMSIG00000012782)	Nr1h5 (ENSMSIG00000012716)	Sike1 (ENSMSIG00000012694) ##22	Csde1 (ENSMSIG00000011996)	ENSMSIG00000011973	Ampd1 (ENSMSIG00000011920)	Dennd2c (ENSMSIG00000011890)	ENSMSIG00000011886	Trim33 (ENSMSIG00000011742)	Syt6 (ENSMSIG00000011663)	ENSMSIG00000011650	Olfml3 (ENSMSIG00000011637)	Hipk1 (ENSMSIG00000011445)	Dclre1b (ENSMSIG00000011393)	Ap4b1 (ENSMSIG00000011131)	Bcl2l15 (ENSMSIG00000011102)	Ptpn22 (ENSMSIG00000011040)	Rsbn1 (ENSMSIG00000011020)
spretus	MODERN SPECIES	12	Cd101 (MGP_SPRETEiJ_G0026378)	Ptgfrn (MGP_SPRETEiJ_G0026379)	Cd2 (MGP_SPRETEiJ_G0026380)	Igsf3 (MGP_SPRETEiJ_G0026381)	Atp1a1 (MGP_SPRETEiJ_G0026382)	Mab21l3 (MGP_SPRETEiJ_G0026383)	Slc22a15 (MGP_SPRETEiJ_G0026384)	Nhlh2 (MGP_SPRETEiJ_G0026385)	Casq2 (MGP_SPRETEiJ_G0026386)	Vangl1 (MGP_SPRETEiJ_G0026387)	Ngf (MGP_SPRETEiJ_G0026388)	Tspan2 (MGP_SPRETEiJ_G0026389)	Tshb (MGP_SPRETEiJ_G0026390)	Sycp1 (MGP_SPRETEiJ_G0026391)	Nr1h5 (MGP_SPRETEiJ_G0026392)	Sike1 (MGP_SPRETEiJ_G0026393) ##22	Csde1 (MGP_SPRETEiJ_G0026394)	Nras (MGP_SPRETEiJ_G0026395)	Ampd1 (MGP_SPRETEiJ_G0026396)	Dennd2c (MGP_SPRETEiJ_G0026397)	Bcas2 (MGP_SPRETEiJ_G0026398)	Trim33 (MGP_SPRETEiJ_G0026399)	Syt6 (MGP_SPRETEiJ_G0026400)	Olfml3 (MGP_SPRETEiJ_G0026401)	Hipk1 (MGP_SPRETEiJ_G0026402)	Dclre1b (MGP_SPRETEiJ_G0026403)	MGP_SPRETEiJ_G0026404	MGP_SPRETEiJ_G0026405	Bcl2l15 (MGP_SPRETEiJ_G0026406)	Ptpn22 (MGP_SPRETEiJ_G0026407)	Rsbn1 (MGP_SPRETEiJ_G0026408)
Ryukyu mouse	MODERN SPECIES	12	Cd101 (MGP_CAROLIEiJ_G0025428)	Ptgfrn (MGP_CAROLIEiJ_G0025429)	Cd2 (MGP_CAROLIEiJ_G0025430)	Igsf3 (MGP_CAROLIEiJ_G0025431)	Atp1a1 (MGP_CAROLIEiJ_G0025432)	Mab21l3 (MGP_CAROLIEiJ_G0025433)	Slc22a15 (MGP_CAROLIEiJ_G0025434)	Nhlh2 (MGP_CAROLIEiJ_G0025435)	Casq2 (MGP_CAROLIEiJ_G0025436)	Vangl1 (MGP_CAROLIEiJ_G0025437)	Ngf (MGP_CAROLIEiJ_G0025438)	Tspan2 (MGP_CAROLIEiJ_G0025439)	Tshb (MGP_CAROLIEiJ_G0025440)	MGP_CAROLIEiJ_G0025441	Nr1h5 (MGP_CAROLIEiJ_G0025442)	Sike1 (MGP_CAROLIEiJ_G0025443) ##22	Csde1 (MGP_CAROLIEiJ_G0025444)	Nras (MGP_CAROLIEiJ_G0025445)	Ampd1 (MGP_CAROLIEiJ_G0025446)	Dennd2c (MGP_CAROLIEiJ_G0025447)	Bcas2 (MGP_CAROLIEiJ_G0025448)	Trim33 (MGP_CAROLIEiJ_G0025449)	Syt6 (MGP_CAROLIEiJ_G0025450)	Olfml3 (MGP_CAROLIEiJ_G0025451)	MGP_CAROLIEiJ_G0025452	Hipk1 (MGP_CAROLIEiJ_G0025453)	Dclre1b (MGP_CAROLIEiJ_G0025454)	MGP_CAROLIEiJ_G0025455	MGP_CAROLIEiJ_G0025456	Bcl2l15 (MGP_CAROLIEiJ_G0025457)	Ptpn22 (MGP_CAROLIEiJ_G0025458)
Shrew mouse	MODERN SPECIES	17	Cd101 (MGP_PahariEiJ_G0026872)	Ptgfrn (MGP_PahariEiJ_G0026873)	Cd2 (MGP_PahariEiJ_G0026874)	Igsf3 (MGP_PahariEiJ_G0026875)	Atp1a1 (MGP_PahariEiJ_G0026876)	Mab21l3 (MGP_PahariEiJ_G0026877)	Slc22a15 (MGP_PahariEiJ_G0026878)	Nhlh2 (MGP_PahariEiJ_G0026879)	Casq2 (MGP_PahariEiJ_G0026880)	Vangl1 (MGP_PahariEiJ_G0026881)	Ngf (MGP_PahariEiJ_G0026882)	Tspan2 (MGP_PahariEiJ_G0026883)	Tshb (MGP_PahariEiJ_G0026884)	Sycp1 (MGP_PahariEiJ_G0026885)	Nr1h5 (MGP_PahariEiJ_G0026886)	Sike1 (MGP_PahariEiJ_G0026887) ##22	Csde1 (MGP_PahariEiJ_G0026888)	Nras (MGP_PahariEiJ_G0026889)	Ampd1 (MGP_PahariEiJ_G0026890)	Dennd2c (MGP_PahariEiJ_G0026891)	Bcas2 (MGP_PahariEiJ_G0026892)	Trim33 (MGP_PahariEiJ_G0026893)	Syt6 (MGP_PahariEiJ_G0026894)	Olfml3 (MGP_PahariEiJ_G0026895)	MGP_PahariEiJ_G0026896	Hipk1 (MGP_PahariEiJ_G0026897)	Dclre1b (MGP_PahariEiJ_G0026898)	MGP_PahariEiJ_G0026899	MGP_PahariEiJ_G0026900	Bcl2l15 (MGP_PahariEiJ_G0026901)	Ptpn22 (MGP_PahariEiJ_G0026902)
Rat	MODERN SPECIES	11	Ptgfrn (ENSRNOG00000015655)	ENSRNOG00000069649	Cd2 (ENSRNOG00000015821)	Igsf3 (ENSRNOG00000023851)	Atp1a1 (ENSRNOG00000030019)	Mab21l3 (ENSRNOG00000016044)	Slc22a15 (ENSRNOG00000033051)	Nhlh2 (ENSRNOG00000054375)	Casq2 (ENSRNOG00000016243)	Vangl1 (ENSRNOG00000016477)	Ngf (ENSRNOG00000016571)	Tspan2 (ENSRNOG00000023338)	Tshb (ENSRNOG00000016793)	Sycp1 (ENSRNOG00000016835)	Nr1h5 (ENSRNOG00000023073)	Sike1 (ENSRNOG00000017502) ##22	Csde1 (ENSRNOG00000061058)	Nras (ENSRNOG00000023079)	Ampd1 (ENSRNOG00000018656)	Dennd2c (ENSRNOG00000018716)	Bcas2 (ENSRNOG00000018783)	ENSRNOG00000067127	Trim33 (ENSRNOG00000018946)	Rbis (ENSRNOG00000038902)	Syt6 (ENSRNOG00000019163)	Olfml3 (ENSRNOG00000019211)	Hipk1 (ENSRNOG00000019333)	Dclre1b (ENSRNOG00000019367)	Ap4b1 (ENSRNOG00000019455)	Bcl2l15 (ENSRNOG00000037149)	Ptpn22 (ENSRNOG00000019614)
Upper Galilee mountains blind mole rat	MODERN SPECIES	868			Cd2 (ENSNGAG00000015298)	Igsf3 (ENSNGAG00000024078)	Atp1a1 (ENSNGAG00000022692)	Mab21l3 (ENSNGAG00000013724)	ENSNGAG00000017546	Nhlh2 (ENSNGAG00000022644)	Casq2 (ENSNGAG00000012360)	Vangl1 (ENSNGAG00000021078)	Ngf (ENSNGAG00000018398)	Tspan2 (ENSNGAG00000014905)	Tshb (ENSNGAG00000001574)	Sycp1 (ENSNGAG00000012549)	Nr1h5 (ENSNGAG00000010800)	Sike1 (ENSNGAG00000016770) ##22	ENSNGAG00000021929	Nras (ENSNGAG00000007289)	Ampd1 (ENSNGAG00000023553)	Dennd2c (ENSNGAG00000023499)	Bcas2 (ENSNGAG00000011988)	Trim33 (ENSNGAG00000021291)	Syt6 (ENSNGAG00000021329)	Olfml3 (ENSNGAG00000017564)	ENSNGAG00000012040	ENSNGAG00000022816	Hipk1 (ENSNGAG00000022219)	Ap4b1 (ENSNGAG00000003659)	Bcl2l15 (ENSNGAG00000023256)	ENSNGAG00000017059	Rsbn1 (ENSNGAG00000019425)
Lesser Egyptian jerboa	MODERN SPECIES	144	Ptgfrn (ENSJJAG00000019616)	Cd2 (ENSJJAG00000019842)	Igsf3 (ENSJJAG00000017489)	Atp1a1 (ENSJJAG00000020791)	Mab21l3 (ENSJJAG00000022482)	Slc22a15 (ENSJJAG00000000255)	Nhlh2 (ENSJJAG00000019983)	Casq2 (ENSJJAG00000020862)	Vangl1 (ENSJJAG00000021462)	ENSJJAG00000021722	Ngf (ENSJJAG00000022901)	Tspan2 (ENSJJAG00000000832)	Tshb (ENSJJAG00000001329)	ENSJJAG00000018067	Nr1h5 (ENSJJAG00000018578)	ENSJJAG00000019089 ##22	Csde1 (ENSJJAG00000019571)	ENSJJAG00000020941	Ampd1 (ENSJJAG00000021675)	Dennd2c (ENSJJAG00000009709)	ENSJJAG00000007313	Trim33 (ENSJJAG00000012942)	Syt6 (ENSJJAG00000020309)	Olfml3 (ENSJJAG00000021371)	Hipk1 (ENSJJAG00000023146)	Ap4b1 (ENSJJAG00000020222)	ENSJJAG00000021243	ENSJJAG00000022263	ENSJJAG00000013556	Rsbn1 (ENSJJAG00000014361)	Phtf1 (ENSJJAG00000019052)
Rodentia_A	ANCESTRAL SPECIES		ENSGT00940000161722	ENSGT00940000158367	ENSGT01030000234540.E	ENSGT00940000155177.b	ENSGT00940000154840.b	ENSGT01050000244827.B	ENSGT00940000160364	ENSGT00940000162602	ENSGT00390000019377.b	ENSGT00390000012496.a	ENSGT00390000007725.A.b	ENSGT00940000157504	ENSGT00940000158152	ENSGT00390000003368.d	ENSGT00940000163318	ENSGT00390000018003.a ##22	ENSGT00390000016950	ENSGT00940000158947	ENSGT00950000183011.c.a.a	ENSGT00950000182931.B.a.b	ENSGT00390000014494	ENSGT00940000156361.B	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b
Sciuridae	ANCESTRAL SPECIES		ENSGT00940000161722	ENSGT00940000158367	ENSGT01030000234540.E	ENSGT00940000155177.b	ENSGT00940000154840.b	ENSGT01050000244827.B	ENSGT00940000160364	ENSGT00940000162602	ENSGT00390000019377.b	ENSGT00390000012496.a	ENSGT00390000007725.A.b	ENSGT00940000157504	ENSGT00940000158152	ENSGT00390000003368.d	ENSGT00940000163318	ENSGT00390000018003.a ##22	ENSGT00390000016950	ENSGT00940000158947	ENSGT00950000183011.c.a.a	ENSGT00950000182931.B.a.b	ENSGT00390000014494	ENSGT00940000156361.B	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b
Marmotini	ANCESTRAL SPECIES	62	ENSGT00940000161722	ENSGT00940000158367	ENSGT01030000234540.E	ENSGT00940000155177.b	ENSGT00940000154840.b	ENSGT01050000244827.B	ENSGT00940000160364	ENSGT00940000162602	ENSGT00390000019377.b	ENSGT00390000012496.a	ENSGT00390000007725.A.b	ENSGT00940000157504	ENSGT00940000158152	ENSGT00390000003368.d	ENSGT00940000163318	ENSGT00390000018003.a ##22	ENSGT00390000016950	ENSGT00940000158947	ENSGT00950000183011.c.a.a	ENSGT00950000182931.B.a.b	ENSGT00390000014494	ENSGT00940000156361.B	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b
Alpin marmot	MODERN SPECIES	79	CD2 (ENSMMMG00000015127)	IGSF3 (ENSMMMG00000015107)	ATP1A1 (ENSMMMG00000015066)	MAB21L3 (ENSMMMG00000015051)	SLC22A15 (ENSMMMG00000015020)	NHLH2 (ENSMMMG00000015011)	CASQ2 (ENSMMMG00000014991)	VANGL1 (ENSMMMG00000014977)	NGF (ENSMMMG00000014973)	TSPAN2 (ENSMMMG00000014968)	TSHB (ENSMMMG00000014957)	ENSMMMG00000014952	SYCP1 (ENSMMMG00000014892)	ENSMMMG00000014879	ENSMMMG00000014870	SIKE1 (ENSMMMG00000014866) ##22	CSDE1 (ENSMMMG00000014448)	NRAS (ENSMMMG00000014434)	AMPD1 (ENSMMMG00000014396)	DENND2C (ENSMMMG00000014354)	ENSMMMG00000014345	BCAS2 (ENSMMMG00000014333)	TRIM33 (ENSMMMG00000013428)	ENSMMMG00000013419	SYT6 (ENSMMMG00000013385)	OLFML3 (ENSMMMG00000013370)	ENSMMMG00000013352	DCLRE1B (ENSMMMG00000013332)	AP4B1 (ENSMMMG00000013063)	BCL2L15 (ENSMMMG00000013046)	PTPN22 (ENSMMMG00000013024)
Marmotini_b	ANCESTRAL SPECIES	74	ENSGT00940000161722	ENSGT00940000158367	ENSGT01030000234540.E	ENSGT00940000155177.b	ENSGT00940000154840.b	ENSGT01050000244827.B	ENSGT00940000160364	ENSGT00940000162602	ENSGT00390000019377.b	ENSGT00390000012496.a	ENSGT00390000007725.A.b	ENSGT00940000157504	ENSGT00940000158152	ENSGT00390000003368.d	ENSGT00940000163318	ENSGT00390000018003.a ##22	ENSGT00390000016950	ENSGT00940000158947	ENSGT00950000183011.c.a.a	ENSGT00950000182931.B.a.b	ENSGT00390000014494	ENSGT00940000156361.B	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b
Squirrel	MODERN SPECIES	227	CD101 (ENSSTOG00000010919)	PTGFRN (ENSSTOG00000010916)	CD2 (ENSSTOG00000004188)	IGSF3 (ENSSTOG00000022906)	ATP1A1 (ENSSTOG00000016127)	MAB21L3 (ENSSTOG00000026516)	SLC22A15 (ENSSTOG00000016141)	NHLH2 (ENSSTOG00000019698)	CASQ2 (ENSSTOG00000015738)	VANGL1 (ENSSTOG00000015734)	NGF (ENSSTOG00000005518)	TSPAN2 (ENSSTOG00000020353)	TSHB (ENSSTOG00000022113)	ENSSTOG00000010304	ENSSTOG00000027072	SIKE1 (ENSSTOG00000001684) ##22	ENSSTOG00000032722	NRAS (ENSSTOG00000023151)	AMPD1 (ENSSTOG00000015082)
Arctic ground squirrel	MODERN SPECIES	134					ATP1A1 (ENSUPAG00010022544)	MAB21L3 (ENSUPAG00010022542)	SLC22A15 (ENSUPAG00010022536)	NHLH2 (ENSUPAG00010022533)	CASQ2 (ENSUPAG00010022531)	VANGL1 (ENSUPAG00010022525)	NGF (ENSUPAG00010022522)	TSPAN2 (ENSUPAG00010022515)	TSHB (ENSUPAG00010022509)	SYCP1 (ENSUPAG00010022501)	ENSUPAG00010022495	SIKE1 (ENSUPAG00010022488) ##22	CSDE1 (ENSUPAG00010022340)	NRAS (ENSUPAG00010022339)	AMPD1 (ENSUPAG00010022337)	DENND2C (ENSUPAG00010022334)	BCAS2 (ENSUPAG00010022333)	TRIM33 (ENSUPAG00010022324)	ENSUPAG00010022323	SYT6 (ENSUPAG00010022321)	OLFML3 (ENSUPAG00010022319)	HIPK1 (ENSUPAG00010022316)	DCLRE1B (ENSUPAG00010022313)	AP4B1 (ENSUPAG00010022296)	RSBN1 (ENSUPAG00010022293)	PHTF1 (ENSUPAG00010022262)	MAGI3 (ENSUPAG00010022248)
Eurasian red squirrel	MODERN SPECIES		CD2 (ENSSVLG00005001265)	IGSF3 (ENSSVLG00005001236)	ENSSVLG00005001215	ATP1A1 (ENSSVLG00005001182)	MAB21L3 (ENSSVLG00005001135)	SLC22A15 (ENSSVLG00005001098)	NHLH2 (ENSSVLG00005001085)	CASQ2 (ENSSVLG00005001056)	VANGL1 (ENSSVLG00005001032)	ENSSVLG00005001021	NGF (ENSSVLG00005001008)	TSPAN2 (ENSSVLG00005000967)	TSHB (ENSSVLG00005000935)	SYCP1 (ENSSVLG00005000819)	ENSSVLG00005000743	SIKE1 (ENSSVLG00005000707) ##22	CSDE1 (ENSSVLG00005000559)	ENSSVLG00005000492	AMPD1 (ENSSVLG00005000465)	DENND2C (ENSSVLG00005000379)	BCAS2 (ENSSVLG00005000302)	ENSSVLG00005000121	ENSSVLG00005000093	ENSSVLG00005022108	TRIM33 (ENSSVLG00005021999)	SYT6 (ENSSVLG00005021841)	HIPK1 (ENSSVLG00005021676)	DCLRE1B (ENSSVLG00005021579)	AP4B1 (ENSSVLG00005021467)	BCL2L15 (ENSSVLG00005021402)	PTPN22 (ENSSVLG00005020484)
Hystricomorpha	ANCESTRAL SPECIES	23	ENSGT00940000161722	ENSGT00940000158367	ENSGT01030000234540.E	ENSGT00940000155177.b	ENSGT00940000154840.b	ENSGT01050000244827.B	ENSGT00940000160364	ENSGT00940000162602	ENSGT00390000019377.b	ENSGT00390000012496.a	ENSGT00390000007725.A.b	ENSGT00940000157504	ENSGT00940000158152	ENSGT00390000003368.d	ENSGT00940000163318	ENSGT00390000018003.a ##22	ENSGT00390000016950	ENSGT00940000158947	ENSGT00950000183011.c.a.a	ENSGT00950000182931.B.a.b	ENSGT00390000014494	ENSGT00940000156361.B	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b
Hystricomorpha_a	ANCESTRAL SPECIES	14	ENSGT00940000161722	ENSGT00940000158367	ENSGT01030000234540.E	ENSGT00940000155177.b	ENSGT00940000154840.b	ENSGT01050000244827.B	ENSGT00940000160364	ENSGT00940000162602	ENSGT00390000019377.b	ENSGT00390000012496.a	ENSGT00390000007725.A.b	ENSGT00940000157504	ENSGT00940000158152	ENSGT00390000003368.d	ENSGT00940000163318	ENSGT00390000018003.a ##22	ENSGT00390000016950	ENSGT00940000158947	ENSGT00950000183011.c.a.a	ENSGT00950000182931.B.a.b	ENSGT00390000014494	ENSGT00940000156361.B	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b
Hystricomorpha_b	ANCESTRAL SPECIES	6	ENSGT00940000161722	ENSGT00940000158367	ENSGT01030000234540.E	ENSGT00940000155177.b	ENSGT00940000154840.b	ENSGT01050000244827.B	ENSGT00940000160364	ENSGT00940000162602	ENSGT00390000019377.b	ENSGT00390000012496.a	ENSGT00390000007725.A.b	ENSGT00940000157504	ENSGT00940000158152	ENSGT00390000003368.d	ENSGT00940000163318	ENSGT00390000018003.a ##22	ENSGT00390000016950	ENSGT00940000158947	ENSGT00950000183011.c.a.a	ENSGT00950000182931.B.a.b	ENSGT00390000014494	ENSGT00940000156361.B	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b
Long-tailed chinchilla	MODERN SPECIES	142	PTGFRN (ENSCLAG00000008229)	CD2 (ENSCLAG00000007838)	IGSF3 (ENSCLAG00000006923)	ATP1A1 (ENSCLAG00000005733)	MAB21L3 (ENSCLAG00000004428)	SLC22A15 (ENSCLAG00000006619)	NHLH2 (ENSCLAG00000005691)	CASQ2 (ENSCLAG00000007972)	VANGL1 (ENSCLAG00000006270)	NGF (ENSCLAG00000004815)	TSPAN2 (ENSCLAG00000007865)	TSHB (ENSCLAG00000011105)	ENSCLAG00000004900	ENSCLAG00000013132	ENSCLAG00000006997	SIKE1 (ENSCLAG00000005344) ##22	CSDE1 (ENSCLAG00000006618)	NRAS (ENSCLAG00000005888)	AMPD1 (ENSCLAG00000006645)	DENND2C (ENSCLAG00000006608)	BCAS2 (ENSCLAG00000004979)	TRIM33 (ENSCLAG00000017369)	SYT6 (ENSCLAG00000011901)	OLFML3 (ENSCLAG00000007544)	ENSCLAG00000006859	HIPK1 (ENSCLAG00000004892)	AP4B1 (ENSCLAG00000006193)	BCL2L15 (ENSCLAG00000013554)	ENSCLAG00000009628	RSBN1 (ENSCLAG00000008858)	PHTF1 (ENSCLAG00000010050)
Degu	MODERN SPECIES	181	ENSODEG00000006132	ATP1A1 (ENSODEG00000006810)	MAB21L3 (ENSODEG00000005924)	SLC22A15 (ENSODEG00000007565)	NHLH2 (ENSODEG00000008157)	CASQ2 (ENSODEG00000009014)	VANGL1 (ENSODEG00000010599)	ENSODEG00000008559	ENSODEG00000008957	ENSODEG00000006379	NGF (ENSODEG00000006538)	TSPAN2 (ENSODEG00000007319)	TSHB (ENSODEG00000009005)	SYCP1 (ENSODEG00000006927)	ENSODEG00000010107	SIKE1 (ENSODEG00000007343) ##22	ENSODEG00000007383	NRAS (ENSODEG00000007937)	AMPD1 (ENSODEG00000009830)	DENND2C (ENSODEG00000006463)	BCAS2 (ENSODEG00000006983)	ENSODEG00000008694	TRIM33 (ENSODEG00000006822)	ENSODEG00000006967	SYT6 (ENSODEG00000007291)	OLFML3 (ENSODEG00000006727)	HIPK1 (ENSODEG00000007245)	ENSODEG00000007048	AP4B1 (ENSODEG00000008168)	BCL2L15 (ENSODEG00000008721)	ENSODEG00000007130
Guinea pig	MODERN SPECIES	2	CD101 (ENSCPOG00000015741)	PTGFRN (ENSCPOG00000015740)	CD2 (ENSCPOG00000036418)	IGSF3 (ENSCPOG00000002029)	ATP1A1 (ENSCPOG00000000927)	MAB21L3 (ENSCPOG00000009511)	SLC22A15 (ENSCPOG00000009506)	NHLH2 (ENSCPOG00000026593)	CASQ2 (ENSCPOG00000001703)	VANGL1 (ENSCPOG00000001701)	NGF (ENSCPOG00000024033)	TSPAN2 (ENSCPOG00000008376)	TSHB (ENSCPOG00000030694)	SYCP1 (ENSCPOG00000012690)	ENSCPOG00000009115	SIKE1 (ENSCPOG00000007406) ##22	CSDE1 (ENSCPOG00000040388)	NRAS (ENSCPOG00000021833)	AMPD1 (ENSCPOG00000002591)	DENND2C (ENSCPOG00000012944)	BCAS2 (ENSCPOG00000020532)	TRIM33 (ENSCPOG00000010140)	SYT6 (ENSCPOG00000011032)	OLFML3 (ENSCPOG00000001291)	HIPK1 (ENSCPOG00000001289)	ENSCPOG00000032000	AP4B1 (ENSCPOG00000001286)	ENSCPOG00000037879	RSBN1 (ENSCPOG00000006990)	PHTF1 (ENSCPOG00000006981)	MAGI3 (ENSCPOG00000006971)
Naked mole-rat female	DUPLICATION
Naked mole-rat female	MODERN SPECIES	10	IGSF3 (ENSHGLG00000018539)	ATP1A1 (ENSHGLG00000009304)	MAB21L3 (ENSHGLG00000009205)	SLC22A15 (ENSHGLG00000011061)	NHLH2 (ENSHGLG00000046588)	CASQ2 (ENSHGLG00000038257)	VANGL1 (ENSHGLG00000016399)	ENSHGLG00000032979	NGF (ENSHGLG00000044577)	TSPAN2 (ENSHGLG00000010786)	TSHB (ENSHGLG00000014600)	ENSHGLG00000006103	ENSHGLG00000047308	ENSHGLG00000004974	ENSHGLG00000032648	SIKE1 (ENSHGLG00000015408) ##22	CSDE1 (ENSHGLG00000009620)	ENSHGLG00000009388	AMPD1 (ENSHGLG00000016007)	ENSHGLG00000015587	BCAS2 (ENSHGLG00000013708)	TRIM33 (ENSHGLG00000015394)	ENSHGLG00000050970	SYT6 (ENSHGLG00000013174)	ENSHGLG00000033308	ENSHGLG00000020883	OLFML3 (ENSHGLG00000009717)	HIPK1 (ENSHGLG00000008264)	DCLRE1B (ENSHGLG00000042662)	AP4B1 (ENSHGLG00000005105)	PTPN22 (ENSHGLG00000010840)
Naked mole-rat female	MODERN SPECIES	24	GRM5 (ENSHGLG00000001307)	TYR (ENSHGLG00000001054)	ENSHGLG00000000730	ENSHGLG00000047307	FOLH1 (ENSHGLG00000005991)	ENSHGLG00000020460	UBTFL1 (ENSHGLG00000034220)	ENSHGLG00000003627	ENSHGLG00000002890	ENSHGLG00000007922	ENSHGLG00000006607	ENSHGLG00000050821	FAT3 (ENSHGLG00000010388)	ENSHGLG00000044735	SLC36A4 (ENSHGLG00000044885)	ENSHGLG00000020910 ##22	ENSHGLG00000014481	C11orf54 (ENSHGLG00000012597)	TAF1D (ENSHGLG00000008795)	MED17 (ENSHGLG00000006191)	VSTM5 (ENSHGLG00000007424)	ENSHGLG00000048701	ENSHGLG00000049421	HEPHL1 (ENSHGLG00000005416)	PANX1 (ENSHGLG00000007682)	ENSHGLG00000050118	IZUMO1R (ENSHGLG00000008985)	ENSHGLG00000019637	GPR83 (ENSHGLG00000018711)	MRE11A (ENSHGLG00000015754)	ANKRD49 (ENSHGLG00000014039)
Lagomorpha	ANCESTRAL SPECIES	1	ENSGT00940000161722	ENSGT00940000158367	ENSGT01030000234540.E	ENSGT00940000155177.b	ENSGT00940000154840.b	ENSGT01050000244827.B	ENSGT00940000160364	ENSGT00940000162602	ENSGT00390000019377.b	ENSGT00390000012496.a	ENSGT00390000007725.A.b	ENSGT00940000157504	ENSGT00940000158152	ENSGT00390000003368.c.b	ENSGT00940000163318	ENSGT00390000018003.a ##22	ENSGT00390000016950	ENSGT00940000158947	ENSGT00950000183011.c.a.a	ENSGT00950000182931.B.a.b	ENSGT00390000014494	ENSGT00940000156361.B	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b
Rabbit	MODERN SPECIES	4	CD101 (ENSOCUG00000000612)	PTGFRN (ENSOCUG00000000608)	CD2 (ENSOCUG00000008474)	IGSF3 (ENSOCUG00000005284)	ATP1A1 (ENSOCUG00000001324)	MAB21L3 (ENSOCUG00000015382)	SLC22A15 (ENSOCUG00000015370)	CASQ2 (ENSOCUG00000010594)	VANGL1 (ENSOCUG00000016240)	NGF (ENSOCUG00000000659)	TSPAN2 (ENSOCUG00000001279)	Tshb (ENSOCUG00000023876)	ENSOCUG00000016463	ENSOCUG00000022499	ENSOCUG00000023188	SIKE1 (ENSOCUG00000016457) ##22	CSDE1 (ENSOCUG00000016438)	NRAS (ENSOCUG00000022455)	AMPD1 (ENSOCUG00000016424)	DENND2C (ENSOCUG00000016789)	BCAS2 (ENSOCUG00000016784)	TRIM33 (ENSOCUG00000016427)	ENSOCUG00000024533	SYT6 (ENSOCUG00000003523)	HIPK1 (ENSOCUG00000003785)	ENSOCUG00000025002	DCLRE1B (ENSOCUG00000003782)	AP4B1 (ENSOCUG00000003778)	BCL2L15 (ENSOCUG00000003775)	PTPN22 (ENSOCUG00000003763)	RSBN1 (ENSOCUG00000003759)
Pika	MODERN SPECIES	1124																ENSOPRG00000008166 ##22
Primates	ANCESTRAL SPECIES	4	ENSGT00940000161722	ENSGT00940000158367	ENSGT01030000234540.E	ENSGT00940000155177.b	ENSGT00510000049596	ENSGT00940000154840.b	ENSGT01050000244827.B	ENSGT00940000160364	ENSGT00940000162602	ENSGT00390000019377.b	ENSGT00390000012496.a	ENSGT00390000007725.A.b	ENSGT00940000157504	ENSGT00940000158152	ENSGT00390000003368	ENSGT00390000018003.a ##22	ENSGT00390000016950	ENSGT00940000158947	ENSGT00950000183011.c.a.a	ENSGT00950000182931.B.a.b	ENSGT00390000014494	ENSGT00940000156361.B	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b
Strepsirrhini	ANCESTRAL SPECIES		ENSGT00940000158367	ENSGT01030000234540.E	ENSGT00940000155177.b	ENSGT00510000049596	ENSGT00940000154840.b	ENSGT01050000244827.B	ENSGT00940000160364	ENSGT00940000162602	ENSGT00390000019377.b	ENSGT00390000012496.a	ENSGT00390000007725.A.b	ENSGT00940000157504	ENSGT00940000158152	ENSGT00390000003368	ENSGT00940000163318	ENSGT00390000018003.a ##22	ENSGT00390000016950	ENSGT00940000158947	ENSGT00950000183011.c.a.a	ENSGT00950000182931.B.a.b	ENSGT00390000014494	ENSGT00940000156361.B	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b
Bushbaby	MODERN SPECIES	188	CD2 (ENSOGAG00000031305)	IGSF3 (ENSOGAG00000017055)	ENSOGAG00000002250	ATP1A1 (ENSOGAG00000000187)	MAB21L3 (ENSOGAG00000002896)	SLC22A15 (ENSOGAG00000002894)	NHLH2 (ENSOGAG00000034540)	CASQ2 (ENSOGAG00000014407)	VANGL1 (ENSOGAG00000014403)	NGF (ENSOGAG00000026573)	TSPAN2 (ENSOGAG00000011521)	TSHB (ENSOGAG00000001448)	SYCP1 (ENSOGAG00000000392)	ENSOGAG00000030317	ENSOGAG00000026550	SIKE1 (ENSOGAG00000005952) ##22	CSDE1 (ENSOGAG00000012127)	NRAS (ENSOGAG00000028680)	AMPD1 (ENSOGAG00000012124)	DENND2C (ENSOGAG00000007545)	BCAS2 (ENSOGAG00000007544)	ENSOGAG00000026611	TRIM33 (ENSOGAG00000009419)	ENSOGAG00000026228	SYT6 (ENSOGAG00000013925)	ENSOGAG00000028247	OLFML3 (ENSOGAG00000013922)	HIPK1 (ENSOGAG00000013919)	DCLRE1B (ENSOGAG00000013917)	AP4B1 (ENSOGAG00000026777)	BCL2L15 (ENSOGAG00000013916)
Lemuriformes	ANCESTRAL SPECIES		ENSGT00940000161722	ENSGT00940000158367	ENSGT01030000234540.E	ENSGT00940000155177.b	ENSGT00510000049596	ENSGT00940000154840.b	ENSGT01050000244827.B	ENSGT00940000160364	ENSGT00940000162602	ENSGT00390000019377.b	ENSGT00390000012496.a	ENSGT00390000007725.A.b	ENSGT00940000157504	ENSGT00940000158152	ENSGT00390000003368	ENSGT00390000018003.a ##22	ENSGT00390000016950	ENSGT00940000158947	ENSGT00950000183011.c.a.a	ENSGT00950000182931.B.a.b	ENSGT00390000014494	ENSGT00940000156361.B	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b
Mouse lemur	MODERN SPECIES	11	MSN (ENSMICG00000042978)	LAS1L (ENSMICG00000010703)	ZC3H12B (ENSMICG00000010697)	ZC4H2 (ENSMICG00000031226)	ENSMICG00000031335	MTMR8 (ENSMICG00000001717)	ASB12 (ENSMICG00000044958)	AMER1 (ENSMICG00000000956)	ENSMICG00000044091	ENSMICG00000033292	ENSMICG00000017900	TSPAN2 (ENSMICG00000002161)	TSHB (ENSMICG00000035229)	ENSMICG00000047834	SYCP1 (ENSMICG00000012072)	SIKE1 (ENSMICG00000030154) ##22	CSDE1 (ENSMICG00000002050)	ENSMICG00000043439	ENSMICG00000032043	AMPD1 (ENSMICG00000002041)	DENND2C (ENSMICG00000013738)	ENSMICG00000029551	BCAS2 (ENSMICG00000042087)	ENSMICG00000033138	ENSMICG00000033709	TRIM33 (ENSMICG00000006297)	ENSMICG00000029438	SYT6 (ENSMICG00000001415)	OLFML3 (ENSMICG00000001412)	HIPK1 (ENSMICG00000001399)	DCLRE1B (ENSMICG00000001396)
Lemuriformes_a	ANCESTRAL SPECIES	31	ENSGT00940000161722	ENSGT00940000158367	ENSGT01030000234540.E	ENSGT00940000155177.b	ENSGT00510000049596	ENSGT00940000154840.b	ENSGT01050000244827.B	ENSGT00940000160364	ENSGT00940000162602	ENSGT00390000019377.b	ENSGT00390000012496.a	ENSGT00390000007725.A.b	ENSGT00940000157504	ENSGT00940000158152	ENSGT00390000003368	ENSGT00390000018003.a ##22	ENSGT00390000016950	ENSGT00940000158947	ENSGT00950000183011.c.a.a	ENSGT00950000182931.B.a.b	ENSGT00390000014494	ENSGT00940000156361.B	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b
Greater bamboo lemur	MODERN SPECIES	511	CD101 (ENSPSMG00000015090)	PTGFRN (ENSPSMG00000015068)	CD2 (ENSPSMG00000015045)	IGSF3 (ENSPSMG00000015029)	CD58 (ENSPSMG00000015016)	ATP1A1 (ENSPSMG00000015000)	MAB21L3 (ENSPSMG00000014900)	SLC22A15 (ENSPSMG00000014868)	NHLH2 (ENSPSMG00000014821)	CASQ2 (ENSPSMG00000014811)	VANGL1 (ENSPSMG00000014794)	NGF (ENSPSMG00000014770)	TSPAN2 (ENSPSMG00000014758)	TSHB (ENSPSMG00000014734)	SYCP1 (ENSPSMG00000014676)	SIKE1 (ENSPSMG00000014489) ##22	CSDE1 (ENSPSMG00000014304)	NRAS (ENSPSMG00000014097)	AMPD1 (ENSPSMG00000014033)	DENND2C (ENSPSMG00000013999)	BCAS2 (ENSPSMG00000013954)	ENSPSMG00000013946	TRIM33 (ENSPSMG00000013846)	SYT6 (ENSPSMG00000013735)	OLFML3 (ENSPSMG00000013692)	HIPK1 (ENSPSMG00000013546)	DCLRE1B (ENSPSMG00000013464)	AP4B1 (ENSPSMG00000013419)	ENSPSMG00000013364	ENSPSMG00000013355	PTPN22 (ENSPSMG00000013259)
Coquerels sifaka	MODERN SPECIES	480																SIKE1 (ENSPCOG00000015882) ##22
Haplorrhini	ANCESTRAL SPECIES	1	ENSGT00940000161722	ENSGT00940000158367	ENSGT01030000234540.E	ENSGT00940000155177.b	ENSGT00510000049596	ENSGT00940000154840.b	ENSGT01050000244827.B	ENSGT00940000160364	ENSGT00940000162602	ENSGT00390000019377.b	ENSGT00390000012496.a	ENSGT00390000007725.A.b	ENSGT00940000157504	ENSGT00940000158152	ENSGT00390000003368	ENSGT00390000018003.a ##22	ENSGT00390000016950	ENSGT00940000158947	ENSGT00950000183011.c.a.a	ENSGT00950000182931.B.a.b	ENSGT00390000014494	ENSGT00940000156361.B	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b
Tarsier	MODERN SPECIES	4154												NGF (ENSTSYG00000030057)	TSPAN2 (ENSTSYG00000012989)	TSHB (ENSTSYG00000002360)	SYCP1 (ENSTSYG00000003008)	SIKE1 (ENSTSYG00000004177) ##22	CSDE1 (ENSTSYG00000003747)	NRAS (ENSTSYG00000027718)	AMPD1 (ENSTSYG00000014776)
Simiiformes	ANCESTRAL SPECIES	3	ENSGT00940000158367	ENSGT01030000234540.E	ENSGT00940000155177.b	ENSGT00940000153362.b.g	ENSGT00510000049596	ENSGT00940000154840.b	ENSGT01050000244827.B	ENSGT00940000160364	ENSGT00940000162602	ENSGT00390000019377.b	ENSGT00390000012496.a	ENSGT00390000007725.A.b	ENSGT00940000157504	ENSGT00940000158152	ENSGT00390000003368	ENSGT00390000018003.a ##22	ENSGT00390000016950	ENSGT00940000158947	ENSGT00950000183011.c.a.a	ENSGT00950000182931.B.a.b	ENSGT00390000014494	ENSGT00940000156361.B	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b
Catarrhini	ANCESTRAL SPECIES	3	ENSGT00940000158367	ENSGT01030000234540.E	ENSGT00940000155177.b	ENSGT00510000049596	ENSGT00940000153362.b.g	ENSGT00940000154840.b	ENSGT01050000244827.B	ENSGT00940000160364	ENSGT00940000162602	ENSGT00390000019377.b	ENSGT00390000012496.a	ENSGT00390000007725.A.b	ENSGT00940000157504	ENSGT00940000158152	ENSGT00390000003368	ENSGT00390000018003.a ##22	ENSGT00390000016950	ENSGT00940000158947	ENSGT00950000183011.c.a.a	ENSGT00950000182931.B.a.b	ENSGT00390000014494	ENSGT00390000008859.b.d.k.a.a	ENSGT00940000156361.B	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a
Hominoidea	ANCESTRAL SPECIES	3	ENSGT01030000234540.E	ENSGT00940000155177.b	ENSGT00510000049596	ENSGT00940000153362.b.g	ENSGT00940000154840.b	ENSGT01050000244827.B	ENSGT00940000160364	ENSGT00940000162602	ENSGT00390000019377.b	ENSGT00390000012496.a	ENSGT00390000000080.a.a.j	ENSGT00390000007725.A.b	ENSGT00940000157504	ENSGT00940000158152	ENSGT00390000003368	ENSGT00390000018003.a ##22	ENSGT00390000016950	ENSGT00940000158947	ENSGT00950000183011.c.a.a	ENSGT00950000182931.B.a.b	ENSGT00390000014494	ENSGT00390000008859.b.d.k.a.a	ENSGT00940000156361.B	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a
Hominidae	ANCESTRAL SPECIES	3	ENSGT01030000234540.E	ENSGT00940000155177.b	ENSGT00510000049596	ENSGT00940000153362.b.g	ENSGT00940000154840.b	ENSGT01050000244827.B	ENSGT00940000160364	ENSGT00940000162602	ENSGT00390000019377.b	ENSGT00390000012496.a	ENSGT00390000000080.a.a.j	ENSGT00390000007725.A.b	ENSGT00940000157504	ENSGT00940000158152	ENSGT00390000003368	ENSGT00390000018003.a ##22	ENSGT00390000016950	ENSGT00940000158947	ENSGT00950000183011.c.a.a	ENSGT00950000182931.B.a.b	ENSGT00390000014494	ENSGT00390000008859.b.d.k.a.a	ENSGT00940000156361.B	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	3	ENSGT01030000234540.E	ENSGT00940000155177.b	ENSGT00510000049596	ENSGT00940000153362.b.g	ENSGT00940000154840.b	ENSGT01050000244827.B	ENSGT00940000160364	ENSGT00940000162602	ENSGT00390000019377.b	ENSGT00390000012496.a	ENSGT00390000000080.a.a.j	ENSGT00390000007725.A.b	ENSGT00940000157504	ENSGT00940000158152	ENSGT00390000003368	ENSGT00390000018003.a ##22	ENSGT00390000016950	ENSGT00940000158947	ENSGT00950000183011.c.a.a	ENSGT00950000182931.B.a.b	ENSGT00390000014494	ENSGT00390000008859.b.d.k.a.a	ENSGT00940000156361.B	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a
Homo/Pan group	ANCESTRAL SPECIES	4	ENSGT01030000234540.E	ENSGT00940000155177.b	ENSGT00510000049596	ENSGT00940000153362.b.g	ENSGT00940000154840.b	ENSGT01050000244827.B	ENSGT00940000160364	ENSGT00940000162602	ENSGT00390000019377.b	ENSGT00390000012496.a	ENSGT00390000000080.a.a.j	ENSGT00390000007725.A.b	ENSGT00940000157504	ENSGT00940000158152	ENSGT00390000003368	ENSGT00390000018003.a ##22	ENSGT00390000016950	ENSGT00940000158947	ENSGT00950000183011.c.a.a	ENSGT00950000182931.B.a.b	ENSGT00390000014494	ENSGT00390000008859.b.d.k.a.a	ENSGT00940000156361.B	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a
Pan	ANCESTRAL SPECIES		ENSGT01030000234540.E	ENSGT00940000155177.b	ENSGT00510000049596	ENSGT00940000153362.b.g	ENSGT00940000154840.b	ENSGT01050000244827.B	ENSGT00940000160364	ENSGT00940000162602	ENSGT00390000019377.b	ENSGT00390000012496.a	ENSGT00390000000080.a.a.j	ENSGT00390000007725.A.b	ENSGT00940000157504	ENSGT00940000158152	ENSGT00390000003368	ENSGT00390000018003.a ##22	ENSGT00390000016950	ENSGT00940000158947	ENSGT00950000183011.c.a.a	ENSGT00950000182931.B.a.b	ENSGT00390000014494	ENSGT00390000008859.b.d.k.a.a	ENSGT00940000156361.B	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a
Chimpanzee	MODERN SPECIES		CD2 (ENSPTRG00000001157)	IGSF3 (ENSPTRG00000001154)	CD58 (ENSPTRG00000001153)	ENSPTRG00000050070	ATP1A1 (ENSPTRG00000001152)	MAB21L3 (ENSPTRG00000001151)	SLC22A15 (ENSPTRG00000001150)	NHLH2 (ENSPTRG00000044281)	CASQ2 (ENSPTRG00000001148)	VANGL1 (ENSPTRG00000001147)	ENSPTRG00000042869	ENSPTRG00000050090	TSPAN2 (ENSPTRG00000001145)	TSHB (ENSPTRG00000001144)	SYCP1 (ENSPTRG00000001143)	SIKE1 (ENSPTRG00000001142) ##22	CSDE1 (ENSPTRG00000033721)	NRAS (ENSPTRG00000001140)	AMPD1 (ENSPTRG00000001139)	DENND2C (ENSPTRG00000001137)	BCAS2 (ENSPTRG00000001136)	ENSPTRG00000045834	TRIM33 (ENSPTRG00000001133)	SYT6 (ENSPTRG00000001132)	OLFML3 (ENSPTRG00000001131)	HIPK1 (ENSPTRG00000001130)	DCLRE1B (ENSPTRG00000001128)	AP4B1 (ENSPTRG00000001127)	BCL2L15 (ENSPTRG00000044863)	PTPN22 (ENSPTRG00000001125)	RSBN1 (ENSPTRG00000001124)
Bonobo	MODERN SPECIES		CD101 (ENSPPAG00000032745)	PTGFRN (ENSPPAG00000043179)	CD2 (ENSPPAG00000030761)	CD58 (ENSPPAG00000036763)	ATP1A1 (ENSPPAG00000039938)	MAB21L3 (ENSPPAG00000037392)	SLC22A15 (ENSPPAG00000033451)	NHLH2 (ENSPPAG00000022478)	CASQ2 (ENSPPAG00000028248)	VANGL1 (ENSPPAG00000037996)	ENSPPAG00000040918	ENSPPAG00000039894	TSPAN2 (ENSPPAG00000028377)	TSHB (ENSPPAG00000031428)	SYCP1 (ENSPPAG00000031200)	SIKE1 (ENSPPAG00000030969) ##22	CSDE1 (ENSPPAG00000025861)	NRAS (ENSPPAG00000037915)	AMPD1 (ENSPPAG00000036239)	DENND2C (ENSPPAG00000033748)	BCAS2 (ENSPPAG00000030780)	ENSPPAG00000028319	TRIM33 (ENSPPAG00000036094)	SYT6 (ENSPPAG00000033807)	OLFML3 (ENSPPAG00000038025)	HIPK1 (ENSPPAG00000036666)	DCLRE1B (ENSPPAG00000031279)	AP4B1 (ENSPPAG00000038448)	BCL2L15 (ENSPPAG00000039569)	PTPN22 (ENSPPAG00000036012)	RSBN1 (ENSPPAG00000028704)
Human	MODERN SPECIES		CD101 (ENSG00000134256)	PTGFRN (ENSG00000134247)	CD2 (ENSG00000116824)	IGSF3 (ENSG00000143061)	CD58 (ENSG00000116815)	ATP1A1 (ENSG00000163399)	MAB21L3 (ENSG00000173212)	SLC22A15 (ENSG00000163393)	NHLH2 (ENSG00000177551)	CASQ2 (ENSG00000118729)	VANGL1 (ENSG00000173218)	NGF (ENSG00000134259)	TSPAN2 (ENSG00000134198)	TSHB (ENSG00000134200)	SYCP1 (ENSG00000198765)	SIKE1 (ENSG00000052723) ##22	CSDE1 (ENSG00000009307)	NRAS (ENSG00000213281)	AMPD1 (ENSG00000116748)	DENND2C (ENSG00000175984)	BCAS2 (ENSG00000116752)	TRIM33 (ENSG00000197323)	SYT6 (ENSG00000134207)	OLFML3 (ENSG00000116774)	HIPK1 (ENSG00000163349)	DCLRE1B (ENSG00000118655)	AP4B1 (ENSG00000134262)	BCL2L15 (ENSG00000188761)	PTPN22 (ENSG00000134242)	RSBN1 (ENSG00000081019)	PHTF1 (ENSG00000116793)
Gorilla	MODERN SPECIES		CD2 (ENSGGOG00000005260)	ENSGGOG00000022319	ENSGGOG00000027658	CD58 (ENSGGOG00000012864)	ATP1A1 (ENSGGOG00000006738)	MAB21L3 (ENSGGOG00000002308)	SLC22A15 (ENSGGOG00000014585)	NHLH2 (ENSGGOG00000043451)	CASQ2 (ENSGGOG00000017029)	ENSGGOG00000026844	ENSGGOG00000037681	ENSGGOG00000040025	TSPAN2 (ENSGGOG00000010083)	TSHB (ENSGGOG00000010389)	SYCP1 (ENSGGOG00000015556)	SIKE1 (ENSGGOG00000015643) ##22	CSDE1 (ENSGGOG00000002164)	NRAS (ENSGGOG00000043922)	AMPD1 (ENSGGOG00000013805)	DENND2C (ENSGGOG00000008502)	ENSGGOG00000041218	ENSGGOG00000038664	TRIM33 (ENSGGOG00000016429)	SYT6 (ENSGGOG00000014743)	OLFML3 (ENSGGOG00000012453)	HIPK1 (ENSGGOG00000012442)	DCLRE1B (ENSGGOG00000011403)	AP4B1 (ENSGGOG00000011396)	BCL2L15 (ENSGGOG00000041016)	PTPN22 (ENSGGOG00000003849)	RSBN1 (ENSGGOG00000003843)
Orangutan	MODERN SPECIES		PTGFRN (ENSPPYG00000000978)	CD2 (ENSPPYG00000000979)	IGSF3 (ENSPPYG00000000981)	CD58 (ENSPPYG00000000982)	ENSPPYG00000000983	ATP1A1 (ENSPPYG00000000985)	MAB21L3 (ENSPPYG00000000986)	SLC22A15 (ENSPPYG00000000987)	NHLH2 (ENSPPYG00000000988)	CASQ2 (ENSPPYG00000000989)	VANGL1 (ENSPPYG00000000990)	NGF (ENSPPYG00000000991)	TSPAN2 (ENSPPYG00000000992)	ENSPPYG00000000993	SYCP1 (ENSPPYG00000000994)	SIKE1 (ENSPPYG00000037081) ##22	CSDE1 (ENSPPYG00000000996)	NRAS (ENSPPYG00000000997)	AMPD1 (ENSPPYG00000000998)	DENND2C (ENSPPYG00000000999)	BCAS2 (ENSPPYG00000001000)	ENSPPYG00000038637	TRIM33 (ENSPPYG00000001001)	SYT6 (ENSPPYG00000001002)	OLFML3 (ENSPPYG00000001003)	HIPK1 (ENSPPYG00000001004)	DCLRE1B (ENSPPYG00000001005)	AP4B1 (ENSPPYG00000001006)	BCL2L15 (ENSPPYG00000001007)	PTPN22 (ENSPPYG00000001008)	RSBN1 (ENSPPYG00000001009)
Gibbon	MODERN SPECIES	2	PTGFRN (ENSNLEG00000005178)	CD2 (ENSNLEG00000005167)	IGSF3 (ENSNLEG00000005162)	CD58 (ENSNLEG00000032597)	ATP1A1 (ENSNLEG00000005047)	MAB21L3 (ENSNLEG00000005038)	SLC22A15 (ENSNLEG00000005012)	NHLH2 (ENSNLEG00000027793)	CASQ2 (ENSNLEG00000004999)	VANGL1 (ENSNLEG00000004984)	ENSNLEG00000030925	ENSNLEG00000035282	TSPAN2 (ENSNLEG00000004961)	TSHB (ENSNLEG00000004959)	SYCP1 (ENSNLEG00000004923)	SIKE1 (ENSNLEG00000004921) ##22	CSDE1 (ENSNLEG00000004842)	NRAS (ENSNLEG00000034325)	AMPD1 (ENSNLEG00000004786)	DENND2C (ENSNLEG00000004759)	BCAS2 (ENSNLEG00000004737)	ENSNLEG00000027666	TRIM33 (ENSNLEG00000004699)	SYT6 (ENSNLEG00000004694)	OLFML3 (ENSNLEG00000004677)	HIPK1 (ENSNLEG00000004610)	DCLRE1B (ENSNLEG00000035337)	AP4B1 (ENSNLEG00000004580)	BCL2L15 (ENSNLEG00000027711)	PTPN22 (ENSNLEG00000004445)	RSBN1 (ENSNLEG00000004426)
Cercopithecidae	ANCESTRAL SPECIES	2	ENSGT00940000158367	ENSGT01030000234540.E	ENSGT00940000155177.b	ENSGT00510000049596	ENSGT00940000153362.b.g	ENSGT00940000154840.b	ENSGT01050000244827.B	ENSGT00940000160364	ENSGT00940000162602	ENSGT00390000019377.b	ENSGT00390000012496.a	ENSGT00390000007725.A.b	ENSGT00940000157504	ENSGT00940000158152	ENSGT00390000003368	ENSGT00390000018003.a ##22	ENSGT00390000016950	ENSGT00940000158947	ENSGT00950000183011.c.a.a	ENSGT00950000182931.B.a.b	ENSGT00390000014494	ENSGT00390000008859.b.d.k.a.a	ENSGT00940000156361.B	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a
Cercopithecinae	ANCESTRAL SPECIES		ENSGT00940000158367	ENSGT01030000234540.E	ENSGT00940000155177.b	ENSGT00510000049596	ENSGT00940000153362.b.g	ENSGT00940000154840.b	ENSGT01050000244827.B	ENSGT00940000160364	ENSGT00940000162602	ENSGT00390000019377.b	ENSGT00390000012496.a	ENSGT00390000007725.A.b	ENSGT00940000157504	ENSGT00940000158152	ENSGT00390000003368	ENSGT00390000018003.a ##22	ENSGT00390000016950	ENSGT00940000158947	ENSGT00950000183011.c.a.a	ENSGT00950000182931.B.a.b	ENSGT00390000014494	ENSGT00390000008859.b.d.k.a.a	ENSGT00940000156361.B	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a
Cercopithecinae_a	ANCESTRAL SPECIES		ENSGT00940000158367	ENSGT01030000234540.E	ENSGT00940000155177.b	ENSGT00510000049596	ENSGT00940000153362.b.g	ENSGT00940000154840.b	ENSGT01050000244827.B	ENSGT00940000160364	ENSGT00940000162602	ENSGT00390000019377.b	ENSGT00390000012496.a	ENSGT00390000007725.A.b	ENSGT00940000157504	ENSGT00940000158152	ENSGT00390000003368	ENSGT00390000018003.a ##22	ENSGT00390000016950	ENSGT00940000158947	ENSGT00950000183011.c.a.a	ENSGT00950000182931.B.a.b	ENSGT00390000014494	ENSGT00390000008859.b.d.k.a.a	ENSGT00940000156361.B	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a
Macaca	ANCESTRAL SPECIES		ENSGT00940000158367	ENSGT01030000234540.E	ENSGT00940000155177.b	ENSGT00510000049596	ENSGT00940000153362.b.g	ENSGT00940000154840.b	ENSGT01050000244827.B	ENSGT00940000160364	ENSGT00940000162602	ENSGT00390000019377.b	ENSGT00390000012496.a	ENSGT00390000007725.A.b	ENSGT00940000157504	ENSGT00940000158152	ENSGT00390000003368	ENSGT00390000018003.a ##22	ENSGT00390000016950	ENSGT00940000158947	ENSGT00950000183011.c.a.a	ENSGT00950000182931.B.a.b	ENSGT00390000014494	ENSGT00390000008859.b.d.k.a.a	ENSGT00940000156361.B	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a
Macaca_a	ANCESTRAL SPECIES		ENSGT00940000155177.b	ENSGT00510000049596	ENSGT00940000153362.b.g	ENSGT00940000154840.b	ENSGT00390000003682.ib.a.b.f.a.a.b.a.b.a.b.a.b	ENSGT01050000244827.B	ENSGT00940000160364	ENSGT01100000263539.b.b.b.b.b.a.b.a.a.b.b.a.a	ENSGT00940000162602	ENSGT00390000019377.b	ENSGT00390000012496.a	ENSGT00390000007725.A.b	ENSGT00940000157504	ENSGT00940000158152	ENSGT00390000003368	ENSGT00390000018003.a ##22	ENSGT00390000016950	ENSGT00940000158947	ENSGT00950000183011.c.a.a	ENSGT00950000182931.B.a.b	ENSGT00390000014494	ENSGT00390000008859.b.d.k.a.a	ENSGT00940000156361.B	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a
Rhesus	MODERN SPECIES		CD2 (ENSMMUG00000052649)	IGSF3 (ENSMMUG00000008157)	CD58 (ENSMMUG00000008156)	ATP1A1 (ENSMMUG00000008151)	ENSMMUG00000041725	MAB21L3 (ENSMMUG00000000431)	SLC22A15 (ENSMMUG00000011860)	ENSMMUG00000063202	NHLH2 (ENSMMUG00000053366)	CASQ2 (ENSMMUG00000008970)	VANGL1 (ENSMMUG00000008967)	NGF (ENSMMUG00000062180)	TSPAN2 (ENSMMUG00000017421)	TSHB (ENSMMUG00000058261)	SYCP1 (ENSMMUG00000017674)	SIKE1 (ENSMMUG00000001973) ##22	CSDE1 (ENSMMUG00000001974)	NRAS (ENSMMUG00000049105)	AMPD1 (ENSMMUG00000001978)	DENND2C (ENSMMUG00000014497)	BCAS2 (ENSMMUG00000043063)	TRIM33 (ENSMMUG00000014620)	SYT6 (ENSMMUG00000009781)	HIPK1 (ENSMMUG00000021535)	AP4B1 (ENSMMUG00000019528)	DCLRE1B (ENSMMUG00000019527)	BCL2L15 (ENSMMUG00000006787)	PTPN22 (ENSMMUG00000006786)	RSBN1 (ENSMMUG00000017823)	PHTF1 (ENSMMUG00000017819)	MAGI3 (ENSMMUG00000017817)
Crab-eating macaque	MODERN SPECIES		IGSF3 (ENSMFAG00000000910)	CD58 (ENSMFAG00000042899)	ENSMFAG00000000314	ATP1A1 (ENSMFAG00000034219)	ENSMFAG00000041093	MAB21L3 (ENSMFAG00000042466)	SLC22A15 (ENSMFAG00000042672)	ENSMFAG00000057817	ENSMFAG00000057471	CASQ2 (ENSMFAG00000042482)	VANGL1 (ENSMFAG00000000860)	NGF (ENSMFAG00000060447)	TSPAN2 (ENSMFAG00000039698)	TSHB (ENSMFAG00000000330)	SYCP1 (ENSMFAG00000043913)	SIKE1 (ENSMFAG00000059908) ##22	CSDE1 (ENSMFAG00000003674)	NRAS (ENSMFAG00000036827)	AMPD1 (ENSMFAG00000038085)	DENND2C (ENSMFAG00000035727)	BCAS2 (ENSMFAG00000043933)	ENSMFAG00000040070	TRIM33 (ENSMFAG00000041350)	ENSMFAG00000057971	SYT6 (ENSMFAG00000041208)	OLFML3 (ENSMFAG00000041763)	HIPK1 (ENSMFAG00000001201)	ENSMFAG00000052991	AP4B1 (ENSMFAG00000020154)	DCLRE1B (ENSMFAG00000042532)	BCL2L15 (ENSMFAG00000035381)
Pig-tailed macaque	MODERN SPECIES	556	CD101 (ENSMNEG00000039661)	PTGFRN (ENSMNEG00000040097)	CD2 (ENSMNEG00000038892)	IGSF3 (ENSMNEG00000040709)	CD58 (ENSMNEG00000030019)	ATP1A1 (ENSMNEG00000034326)	MAB21L3 (ENSMNEG00000044981)	SLC22A15 (ENSMNEG00000036847)	NHLH2 (ENSMNEG00000006709)	CASQ2 (ENSMNEG00000028623)	VANGL1 (ENSMNEG00000030336)	NGF (ENSMNEG00000037107)	TSPAN2 (ENSMNEG00000043519)	TSHB (ENSMNEG00000041678)	SYCP1 (ENSMNEG00000036344)	SIKE1 (ENSMNEG00000013363) ##22	CSDE1 (ENSMNEG00000045247)	NRAS (ENSMNEG00000044823)	AMPD1 (ENSMNEG00000040685)	DENND2C (ENSMNEG00000035993)	BCAS2 (ENSMNEG00000029335)	ENSMNEG00000031644	TRIM33 (ENSMNEG00000036143)	SYT6 (ENSMNEG00000034665)	OLFML3 (ENSMNEG00000028120)	HIPK1 (ENSMNEG00000040836)	DCLRE1B (ENSMNEG00000038418)	AP4B1 (ENSMNEG00000041483)	BCL2L15 (ENSMNEG00000003291)	PTPN22 (ENSMNEG00000030260)	RSBN1 (ENSMNEG00000038008)
Cercopithecinae_b	ANCESTRAL SPECIES	1	ENSGT00940000158367	ENSGT01030000234540.E	ENSGT00940000155177.b	ENSGT00510000049596	ENSGT00940000153362.b.g	ENSGT00940000154840.b	ENSGT01050000244827.B	ENSGT00940000160364	ENSGT00940000162602	ENSGT00390000019377.b	ENSGT00390000012496.a	ENSGT00390000007725.A.b	ENSGT00940000157504	ENSGT00940000158152	ENSGT00390000003368	ENSGT00390000018003.a ##22	ENSGT00390000016950	ENSGT00940000158947	ENSGT00950000183011.c.a.a	ENSGT00950000182931.B.a.b	ENSGT00390000014494	ENSGT00390000008859.b.d.k.a.a	ENSGT00940000156361.B	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a
Olive baboon	MODERN SPECIES		CD2 (ENSPANG00000015878)	IGSF3 (ENSPANG00000000305)	CD58 (ENSPANG00000044886)	ATP1A1 (ENSPANG00000001212)	ENSPANG00000039208	ENSPANG00000037734	MAB21L3 (ENSPANG00000014173)	SLC22A15 (ENSPANG00000003118)	NHLH2 (ENSPANG00000001481)	CASQ2 (ENSPANG00000004482)	VANGL1 (ENSPANG00000000935)	ENSPANG00000038005	NGF (ENSPANG00000048544)	TSPAN2 (ENSPANG00000008556)	SYCP1 (ENSPANG00000012296)	SIKE1 (ENSPANG00000015792) ##22	CSDE1 (ENSPANG00000018873)	NRAS (ENSPANG00000008181)	AMPD1 (ENSPANG00000012433)	DENND2C (ENSPANG00000024010)	BCAS2 (ENSPANG00000019089)	TRIM33 (ENSPANG00000016076)	SYT6 (ENSPANG00000005601)	OLFML3 (ENSPANG00000015794)	HIPK1 (ENSPANG00000003119)	DCLRE1B (ENSPANG00000029371)	AP4B1 (ENSPANG00000010749)	BCL2L15 (ENSPANG00000018739)	PTPN22 (ENSPANG00000004483)	RSBN1 (ENSPANG00000019090)	PHTF1 (ENSPANG00000019967)
Cercopithecinae_d	ANCESTRAL SPECIES	49	ENSGT00940000158367	ENSGT01030000234540.E	ENSGT00940000155177.b	ENSGT00510000049596	ENSGT00940000153362.b.g	ENSGT00940000154840.b	ENSGT01050000244827.B	ENSGT00940000160364	ENSGT00940000162602	ENSGT00390000019377.b	ENSGT00390000012496.a	ENSGT00390000007725.A.b	ENSGT00940000157504	ENSGT00940000158152	ENSGT00390000003368	ENSGT00390000018003.a ##22	ENSGT00390000016950	ENSGT00940000158947	ENSGT00950000183011.c.a.a	ENSGT00950000182931.B.a.b	ENSGT00390000014494	ENSGT00390000008859.b.d.k.a.a	ENSGT00940000156361.B	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a
Sooty mangabey	MODERN SPECIES	246	CD2 (ENSCATG00000038663)	IGSF3 (ENSCATG00000038248)	CD58 (ENSCATG00000032372)	ENSCATG00000032280	ATP1A1 (ENSCATG00000032036)	MAB21L3 (ENSCATG00000034482)	SLC22A15 (ENSCATG00000031862)	NHLH2 (ENSCATG00000020039)	CASQ2 (ENSCATG00000004694)	VANGL1 (ENSCATG00000009145)	NGF (ENSCATG00000017585)	TSPAN2 (ENSCATG00000034149)	TSHB (ENSCATG00000039665)	SYCP1 (ENSCATG00000039270)	ENSCATG00000039685	SIKE1 (ENSCATG00000005298) ##22	CSDE1 (ENSCATG00000036962)	NRAS (ENSCATG00000040984)	AMPD1 (ENSCATG00000036481)	DENND2C (ENSCATG00000008808)	BCAS2 (ENSCATG00000033204)	ENSCATG00000018546	TRIM33 (ENSCATG00000011671)	SYT6 (ENSCATG00000040499)	OLFML3 (ENSCATG00000041714)	HIPK1 (ENSCATG00000014200)	AP4B1 (ENSCATG00000021570)	DCLRE1B (ENSCATG00000015222)	BCL2L15 (ENSCATG00000021796)	PTPN22 (ENSCATG00000039152)	RSBN1 (ENSCATG00000009799)
Drill	MODERN SPECIES	1360	PTGFRN (ENSMLEG00000033407)	CD2 (ENSMLEG00000036866)	IGSF3 (ENSMLEG00000000562)	ENSMLEG00000044327	CD58 (ENSMLEG00000033488)	ATP1A1 (ENSMLEG00000030629)	MAB21L3 (ENSMLEG00000006311)	SLC22A15 (ENSMLEG00000030172)	NHLH2 (ENSMLEG00000026800)	CASQ2 (ENSMLEG00000038887)	VANGL1 (ENSMLEG00000039246)	NGF (ENSMLEG00000042620)	TSPAN2 (ENSMLEG00000036280)	TSHB (ENSMLEG00000040982)	SYCP1 (ENSMLEG00000027871)	SIKE1 (ENSMLEG00000034245) ##22	CSDE1 (ENSMLEG00000038673)	NRAS (ENSMLEG00000039333)	AMPD1 (ENSMLEG00000032457)	DENND2C (ENSMLEG00000001523)	BCAS2 (ENSMLEG00000036312)	ENSMLEG00000031821	TRIM33 (ENSMLEG00000027858)	SYT6 (ENSMLEG00000032781)	OLFML3 (ENSMLEG00000026231)	HIPK1 (ENSMLEG00000041059)	DCLRE1B (ENSMLEG00000035677)	AP4B1 (ENSMLEG00000020377)	BCL2L15 (ENSMLEG00000042056)	PTPN22 (ENSMLEG00000035739)	RSBN1 (ENSMLEG00000044249)
Vervet Monkey	MODERN SPECIES	12	CD2 (ENSCSAG00000001696)	IGSF3 (ENSCSAG00000001695)	CD58 (ENSCSAG00000001694)	ENSCSAG00000001692	ATP1A1 (ENSCSAG00000001691)	ENSCSAG00000001690	MAB21L3 (ENSCSAG00000001688)	SLC22A15 (ENSCSAG00000001686)	NHLH2 (ENSCSAG00000000172)	CASQ2 (ENSCSAG00000001685)	VANGL1 (ENSCSAG00000001684)	NGF (ENSCSAG00000000171)	TSPAN2 (ENSCSAG00000001681)	TSHB (ENSCSAG00000001678)	SYCP1 (ENSCSAG00000001672)	SIKE1 (ENSCSAG00000001660) ##22	CSDE1 (ENSCSAG00000001658)	NRAS (ENSCSAG00000001656)	AMPD1 (ENSCSAG00000001655)	DENND2C (ENSCSAG00000001653)	BCAS2 (ENSCSAG00000001652)	TRIM33 (ENSCSAG00000001649)	SYT6 (ENSCSAG00000001648)	OLFML3 (ENSCSAG00000001647)	HIPK1 (ENSCSAG00000001645)	DCLRE1B (ENSCSAG00000001642)	AP4B1 (ENSCSAG00000001639)	BCL2L15 (ENSCSAG00000001637)	PTPN22 (ENSCSAG00000001636)	RSBN1 (ENSCSAG00000001635)	MAGI3 (ENSCSAG00000001630)
Rhinopithecus	ANCESTRAL SPECIES	10	ENSGT00940000158367	ENSGT01030000234540.E	ENSGT00940000155177.b	ENSGT00510000049596	ENSGT00940000153362.b.g	ENSGT00940000154840.b	ENSGT01050000244827.B	ENSGT00940000160364	ENSGT00940000162602	ENSGT00390000019377.b	ENSGT00390000012496.a	ENSGT00390000007725.A.b	ENSGT00940000157504	ENSGT00940000158152	ENSGT00390000003368	ENSGT00390000018003.a ##22	ENSGT00390000016950.m	ENSGT00940000158947	ENSGT00950000183011.c.a.a	ENSGT00950000182931.B.a.b	ENSGT00390000008859.b.d.k.a.a	ENSGT00940000156361.B	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00940000169252	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b
Golden snub-nosed monkey	MODERN SPECIES	1631												NGF (ENSRROG00000008861)	TSPAN2 (ENSRROG00000033153)	TSHB (ENSRROG00000039614)	SYCP1 (ENSRROG00000045618)	SIKE1 (ENSRROG00000044235) ##22	CSDE1 (ENSRROG00000043101)	NRAS (ENSRROG00000033256)	AMPD1 (ENSRROG00000037975)	DENND2C (ENSRROG00000039971)	ENSRROG00000044367	ENSRROG00000037515	TRIM33 (ENSRROG00000027892)	SYT6 (ENSRROG00000030113)	OLFML3 (ENSRROG00000039788)	HIPK1 (ENSRROG00000009739)	DCLRE1B (ENSRROG00000039018)	AP4B1 (ENSRROG00000030262)	ENSRROG00000029137	PTPN22 (ENSRROG00000030360)	RSBN1 (ENSRROG00000012330)
Black snub-nosed monkey	MODERN SPECIES	299	PTGFRN (ENSRBIG00000044418)	CD2 (ENSRBIG00000042753)	IGSF3 (ENSRBIG00000038679)	ENSRBIG00000035126	CD58 (ENSRBIG00000044416)	ATP1A1 (ENSRBIG00000015454)	MAB21L3 (ENSRBIG00000028983)	SLC22A15 (ENSRBIG00000008924)	NHLH2 (ENSRBIG00000021541)	CASQ2 (ENSRBIG00000044022)	VANGL1 (ENSRBIG00000040389)	NGF (ENSRBIG00000043863)	TSPAN2 (ENSRBIG00000040980)	TSHB (ENSRBIG00000030494)	SYCP1 (ENSRBIG00000040488)	SIKE1 (ENSRBIG00000042450) ##22	ENSRBIG00000038966	NRAS (ENSRBIG00000043132)	AMPD1 (ENSRBIG00000042678)	DENND2C (ENSRBIG00000040882)	BCAS2 (ENSRBIG00000036310)	TRIM33 (ENSRBIG00000044424)	SYT6 (ENSRBIG00000033598)	OLFML3 (ENSRBIG00000037707)	HIPK1 (ENSRBIG00000028252)	DCLRE1B (ENSRBIG00000032633)	AP4B1 (ENSRBIG00000041004)	ENSRBIG00000028387	PTPN22 (ENSRBIG00000039476)	RSBN1 (ENSRBIG00000038594)	PHTF1 (ENSRBIG00000033612)
Platyrrhini	ANCESTRAL SPECIES		ENSGT00940000158367	ENSGT01030000234540.E	ENSGT00940000155177.b	ENSGT00940000153362.b.g	ENSGT00510000049596	ENSGT00940000154840.b	ENSGT01050000244827.B	ENSGT00940000160364	ENSGT00940000162602	ENSGT00390000019377.b	ENSGT00390000012496.a	ENSGT00390000007725.A.b	ENSGT00940000157504	ENSGT00940000158152	ENSGT00390000003368	ENSGT00390000018003.a ##22	ENSGT00390000016950.o.a	ENSGT00940000158947.u.a	ENSGT00950000183011.c.a.a	ENSGT00950000182931.B.a.b	ENSGT00390000014494	ENSGT00940000156361.B	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b
Cebidae	ANCESTRAL SPECIES	1	ENSGT00940000158367	ENSGT01030000234540.E	ENSGT00940000155177.b	ENSGT00940000153362.b.g	ENSGT00510000049596	ENSGT00940000154840.b	ENSGT01050000244827.B	ENSGT00940000160364	ENSGT00940000162602	ENSGT00390000019377.b	ENSGT00390000012496.a	ENSGT00390000007725.A.b	ENSGT00940000157504	ENSGT00940000158152	ENSGT00390000003368	ENSGT00390000018003.a ##22	ENSGT00390000016950.o.a	ENSGT00940000158947.u.a	ENSGT00950000183011.c.a.a	ENSGT00950000182931.B.a.b	ENSGT00390000014494	ENSGT00940000156361.B	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b
Marmoset	MODERN SPECIES	19	IGSF3 (ENSCJAG00000006006)	ENSCJAG00000006049	ENSCJAG00000071790	ATP1A1 (ENSCJAG00000006058)	ENSCJAG00000071068	ENSCJAG00000075676	MAB21L3 (ENSCJAG00000006194)	SLC22A15 (ENSCJAG00000012813)	NHLH2 (ENSCJAG00000079748)	CASQ2 (ENSCJAG00000012776)	VANGL1 (ENSCJAG00000012756)	NGF (ENSCJAG00000070914)	TSHB (ENSCJAG00000059226)	TSPAN2 (ENSCJAG00000046657)	SYCP1 (ENSCJAG00000012678)	SIKE1 (ENSCJAG00000012663) ##22	CSDE1 (ENSCJAG00000012565)	NRAS (ENSCJAG00000036517)	AMPD1 (ENSCJAG00000012494)	DENND2C (ENSCJAG00000012467)	BCAS2 (ENSCJAG00000012448)	TRIM33 (ENSCJAG00000012339)	SYT6 (ENSCJAG00000012333)	ENSCJAG00000074095	ENSCJAG00000041494	OLFML3 (ENSCJAG00000075679)	HIPK1 (ENSCJAG00000012221)	DCLRE1B (ENSCJAG00000079501)	AP4B1 (ENSCJAG00000012178)	ENSCJAG00000022770	ENSCJAG00000012160
Cebidae_a	ANCESTRAL SPECIES	41	ENSGT00940000158367	ENSGT01030000234540.E	ENSGT00940000155177.b	ENSGT00940000153362.b.g	ENSGT00510000049596	ENSGT00940000154840.b	ENSGT01050000244827.B	ENSGT00940000160364	ENSGT00940000162602	ENSGT00390000019377.b	ENSGT00390000012496.a	ENSGT00390000007725.A.b	ENSGT00940000157504	ENSGT00940000158152	ENSGT00390000003368	ENSGT00390000018003.a ##22	ENSGT00390000016950.o.a	ENSGT00940000158947.u.a	ENSGT00950000183011.c.a.a	ENSGT00950000182931.B.a.b	ENSGT00390000014494	ENSGT00940000156361.B	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b
Bolivian squirrel monkey	MODERN SPECIES	98	CD2 (ENSSBOG00000022804)	IGSF3 (ENSSBOG00000024073)	ENSSBOG00000022544	CD58 (ENSSBOG00000032505)	ENSSBOG00000015813	ATP1A1 (ENSSBOG00000020417)	MAB21L3 (ENSSBOG00000035896)	SLC22A15 (ENSSBOG00000031792)	NHLH2 (ENSSBOG00000014733)	CASQ2 (ENSSBOG00000003704)	VANGL1 (ENSSBOG00000032697)	NGF (ENSSBOG00000029889)	TSPAN2 (ENSSBOG00000002008)	TSHB (ENSSBOG00000035791)	SYCP1 (ENSSBOG00000024910)	SIKE1 (ENSSBOG00000021497) ##22	CSDE1 (ENSSBOG00000035592)	NRAS (ENSSBOG00000021039)	AMPD1 (ENSSBOG00000028352)	DENND2C (ENSSBOG00000030035)	BCAS2 (ENSSBOG00000027778)	TRIM33 (ENSSBOG00000032566)	SYT6 (ENSSBOG00000035461)	OLFML3 (ENSSBOG00000019004)	HIPK1 (ENSSBOG00000021509)	DCLRE1B (ENSSBOG00000032509)	AP4B1 (ENSSBOG00000032743)	BCL2L15 (ENSSBOG00000035394)	PTPN22 (ENSSBOG00000029176)	RSBN1 (ENSSBOG00000026943)	PHTF1 (ENSSBOG00000031692)
Capuchin	MODERN SPECIES	32	ENSCCAG00000037368	CD2 (ENSCCAG00000036008)	IGSF3 (ENSCCAG00000035554)	CD58 (ENSCCAG00000024820)	ATP1A1 (ENSCCAG00000036026)	MAB21L3 (ENSCCAG00000018744)	SLC22A15 (ENSCCAG00000030828)	NHLH2 (ENSCCAG00000017644)	CASQ2 (ENSCCAG00000012372)	VANGL1 (ENSCCAG00000032113)	NGF (ENSCCAG00000020128)	TSPAN2 (ENSCCAG00000035942)	TSHB (ENSCCAG00000029875)	SYCP1 (ENSCCAG00000034214)	ENSCCAG00000026846	SIKE1 (ENSCCAG00000036846) ##22	ENSCCAG00000036794	NRAS (ENSCCAG00000030765)	AMPD1 (ENSCCAG00000021136)	DENND2C (ENSCCAG00000021424)	ENSCCAG00000021894	TRIM33 (ENSCCAG00000031560)	SYT6 (ENSCCAG00000037943)	OLFML3 (ENSCCAG00000034108)	HIPK1 (ENSCCAG00000024302)	AP4B1 (ENSCCAG00000030000)	DCLRE1B (ENSCCAG00000024647)	BCL2L15 (ENSCCAG00000037914)	PTPN22 (ENSCCAG00000030397)	RSBN1 (ENSCCAG00000002881)	ENSCCAG00000025051
Mas night monkey	MODERN SPECIES	648										ENSANAG00000024878	ENSANAG00000028795	NGF (ENSANAG00000015197)	TSPAN2 (ENSANAG00000021842)	TSHB (ENSANAG00000032032)	SYCP1 (ENSANAG00000034755)	SIKE1 (ENSANAG00000028636) ##22	CSDE1 (ENSANAG00000024665)	ENSANAG00000011222	AMPD1 (ENSANAG00000031957)	DENND2C (ENSANAG00000033146)	BCAS2 (ENSANAG00000031046)	TRIM33 (ENSANAG00000029798)	SYT6 (ENSANAG00000026153)	OLFML3 (ENSANAG00000022699)	HIPK1 (ENSANAG00000024725)	AP4B1 (ENSANAG00000030172)	DCLRE1B (ENSANAG00000036972)	BCL2L15 (ENSANAG00000024457)	PTPN22 (ENSANAG00000019287)	RSBN1 (ENSANAG00000032046)	PHTF1 (ENSANAG00000038095)
Laurasiatheria	ANCESTRAL SPECIES		ENSGT00940000158367	ENSGT01030000234540.E	ENSGT00940000155177.b	ENSGT00510000049596	ENSGT00940000154840.b	ENSGT01050000244827.B	ENSGT00940000160364	ENSGT00940000162602	ENSGT00390000019377.b	ENSGT00390000012496.a	ENSGT00390000007725.A.b	ENSGT00940000157504	ENSGT00940000158152	ENSGT00390000003368	ENSGT00940000163318	ENSGT00390000018003.a ##22	ENSGT00390000016950	ENSGT00940000158947	ENSGT00950000183011.c.a.a	ENSGT00950000182931.B.a.b	ENSGT00390000014494	ENSGT00940000156361.B	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b
Laurasiatheria_a	ANCESTRAL SPECIES		ENSGT00940000158367	ENSGT01030000234540.E	ENSGT00940000155177.b	ENSGT00510000049596	ENSGT00940000154840.b	ENSGT01050000244827.B	ENSGT00940000160364	ENSGT00940000162602	ENSGT00390000019377.b	ENSGT00390000012496.a	ENSGT00390000007725.A.b	ENSGT00940000157504	ENSGT00940000158152	ENSGT00390000003368	ENSGT00940000163318	ENSGT00390000018003.a ##22	ENSGT00390000016950	ENSGT00940000158947	ENSGT00950000183011.c.a.a	ENSGT00950000182931.B.a.b	ENSGT00390000014494	ENSGT00940000156361.B	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b
Artiodactyla	ANCESTRAL SPECIES		ENSGT00940000158367	ENSGT01030000234540.E	ENSGT00940000155177.b	ENSGT00510000049596	ENSGT00940000154840.b	ENSGT01050000244827.B	ENSGT00940000160364	ENSGT00940000162602	ENSGT00390000019377.b	ENSGT00390000012496.a	ENSGT00390000007725.A.b	ENSGT00940000157504	ENSGT00940000158152	ENSGT00390000003368	ENSGT00940000163318	ENSGT00390000018003.a ##22	ENSGT00390000016950	ENSGT00940000158947	ENSGT00950000183011.c.a.a	ENSGT00950000182931.B.a.b	ENSGT00390000014494	ENSGT00940000156361.B	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b
Suina	ANCESTRAL SPECIES	32	ENSGT00940000161722	ENSGT00940000158367	ENSGT01030000234540.E	ENSGT00940000155177.b	ENSGT00510000049596	ENSGT00940000154840.b	ENSGT01050000244827.B	ENSGT00940000160364	ENSGT00940000162602	ENSGT00390000019377.b	ENSGT00390000012496.a	ENSGT00390000007725.A.b	ENSGT00940000157504	ENSGT00940000158152	ENSGT00390000003368	ENSGT00390000018003.a ##22	ENSGT00390000016950	ENSGT00940000158947	ENSGT00950000183011.c.a.a	ENSGT00950000182931.B.a.b	ENSGT00390000014494	ENSGT00940000156361.B	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b
Pig	MODERN SPECIES	12	CD2 (ENSSSCG00000006736)	IGSF3 (ENSSSCG00000006737)	CD58 (ENSSSCG00000006738)	ENSSSCG00000040692	ATP1A1 (ENSSSCG00000006740)	MAB21L3 (ENSSSCG00000006742)	SLC22A15 (ENSSSCG00000006743)	NHLH2 (ENSSSCG00000006744)	CASQ2 (ENSSSCG00000061647)	VANGL1 (ENSSSCG00000006746)	ENSSSCG00000042421	NGF (ENSSSCG00000032417)	TSPAN2 (ENSSSCG00000006748)	TSHB (ENSSSCG00000006749)	SYCP1 (ENSSSCG00000006750)	SIKE1 (ENSSSCG00000006751) ##22	CSDE1 (ENSSSCG00000006752)	NRAS (ENSSSCG00000032477)	AMPD1 (ENSSSCG00000006754)	DENND2C (ENSSSCG00000006755)	BCAS2 (ENSSSCG00000055502)	TRIM33 (ENSSSCG00000006757)	SYT6 (ENSSSCG00000006758)	OLFML3 (ENSSSCG00000045712)	HIPK1 (ENSSSCG00000006760)	DCLRE1B (ENSSSCG00000006761)	AP4B1 (ENSSSCG00000006762)	BCL2L15 (ENSSSCG00000038970)	PTPN22 (ENSSSCG00000006764)	RSBN1 (ENSSSCG00000030154)	PHTF1 (ENSSSCG00000006766)
Chacoan peccary	MODERN SPECIES	215														ENSCWAG00000002288	SYCP1 (ENSCWAG00000002322)	SIKE1 (ENSCWAG00000002435) ##22	CSDE1 (ENSCWAG00000002474)	NRAS (ENSCWAG00000002601)	AMPD1 (ENSCWAG00000002625)	DENND2C (ENSCWAG00000002658)	BCAS2 (ENSCWAG00000002681)	TRIM33 (ENSCWAG00000002700)	SYT6 (ENSCWAG00000002747)	OLFML3 (ENSCWAG00000002787)	HIPK1 (ENSCWAG00000002810)	DCLRE1B (ENSCWAG00000002892)	AP4B1 (ENSCWAG00000002910)	BCL2L15 (ENSCWAG00000002937)	PTPN22 (ENSCWAG00000003032)	RSBN1 (ENSCWAG00000003607)	PHTF1 (ENSCWAG00000003629)
Artiodactyla_a	ANCESTRAL SPECIES		ENSGT00940000158367	ENSGT01030000234540.E	ENSGT00940000155177.b	ENSGT00510000049596	ENSGT00940000154840.b	ENSGT01050000244827.B	ENSGT00940000160364	ENSGT00940000162602	ENSGT00390000019377.b	ENSGT00390000012496.a	ENSGT00390000007725.A.b	ENSGT00940000157504	ENSGT00940000158152	ENSGT00390000003368	ENSGT00940000163318	ENSGT00390000018003.a ##22	ENSGT00390000016950	ENSGT00940000158947	ENSGT00950000183011.c.a.a	ENSGT00950000182931.B.a.b	ENSGT00390000014494	ENSGT00940000156361.B	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b
Camelidae	ANCESTRAL SPECIES	29	ENSGT00940000161722	ENSGT00940000158367	ENSGT01030000234540.E	ENSGT00940000155177.b	ENSGT00510000049596	ENSGT00940000154840.b	ENSGT01050000244827.B	ENSGT00940000160364	ENSGT00390000019377.b	ENSGT00390000012496.a	ENSGT00390000007725.A.b	ENSGT00940000157504	ENSGT00940000158152	ENSGT00390000003368	ENSGT00940000163318	ENSGT00390000018003.a ##22	ENSGT00390000016950	ENSGT00940000158947	ENSGT00950000183011.c.a.a	ENSGT00950000182931.B.a.b	ENSGT00390000014494	ENSGT00940000156361.B	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b
Arabian camel	MODERN SPECIES	35	CD101 (ENSCDRG00005003285)	PTGFRN (ENSCDRG00005003307)	CD2 (ENSCDRG00005003335)	IGSF3 (ENSCDRG00005003359)	ENSCDRG00005003393	ATP1A1 (ENSCDRG00005003442)	MAB21L3 (ENSCDRG00005003501)	SLC22A15 (ENSCDRG00005003542)	CASQ2 (ENSCDRG00005003648)	VANGL1 (ENSCDRG00005003686)	NGF (ENSCDRG00005003718)	TSPAN2 (ENSCDRG00005003772)	TSHB (ENSCDRG00005003878)	SYCP1 (ENSCDRG00005003944)	ENSCDRG00005004390	SIKE1 (ENSCDRG00005004534) ##22	ENSCDRG00005004604	NRAS (ENSCDRG00005004935)	AMPD1 (ENSCDRG00005004958)	DENND2C (ENSCDRG00005005062)	BCAS2 (ENSCDRG00005005135)	TRIM33 (ENSCDRG00005005176)	SYT6 (ENSCDRG00005005375)	OLFML3 (ENSCDRG00005005451)	HIPK1 (ENSCDRG00005005505)	DCLRE1B (ENSCDRG00005005678)	AP4B1 (ENSCDRG00005005713)	ENSCDRG00005005752	PTPN22 (ENSCDRG00005005810)	RSBN1 (ENSCDRG00005005951)	PHTF1 (ENSCDRG00005006008)
Alpaca	MODERN SPECIES	2640													ENSVPAG00000000756	TSHB (ENSVPAG00000000755)	SYCP1 (ENSVPAG00000000754)	SIKE1 (ENSVPAG00000000751) ##22	CSDE1 (ENSVPAG00000000749)	NRAS (ENSVPAG00000000746)	AMPD1 (ENSVPAG00000000742)	DENND2C (ENSVPAG00000000733)	BCAS2 (ENSVPAG00000000732)	TRIM33 (ENSVPAG00000000728)
Artiodactyla_b	ANCESTRAL SPECIES		ENSGT00940000158367	ENSGT01030000234540.E	ENSGT00940000155177.b	ENSGT00510000049596	ENSGT00940000154840.b	ENSGT01050000244827.B	ENSGT00940000160364	ENSGT00940000162602	ENSGT00390000019377.b	ENSGT00390000012496.a	ENSGT00390000007725.A.b	ENSGT00940000157504	ENSGT00940000158152	ENSGT00390000003368	ENSGT00940000163318	ENSGT00390000018003.a ##22	ENSGT00390000016950	ENSGT00940000158947	ENSGT00950000183011.c.a.a	ENSGT00950000182931.B.a.b	ENSGT00390000014494	ENSGT00940000156361.B	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b
Cetacea	ANCESTRAL SPECIES		ENSGT00940000158367	ENSGT01030000234540.E	ENSGT00940000155177.b	ENSGT00510000049596	ENSGT00940000154840.b	ENSGT01050000244827.B	ENSGT00940000160364	ENSGT00940000162602	ENSGT00390000019377.b	ENSGT00390000012496.a	ENSGT00390000007725.A.b	ENSGT00940000157504	ENSGT00940000158152	ENSGT00390000003368	ENSGT00940000163318	ENSGT00390000018003.a ##22	ENSGT00390000016950	ENSGT00940000158947	ENSGT00950000183011.c.a.a	ENSGT00950000182931.B.a.b	ENSGT00390000014494	ENSGT00940000156361.B	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b
Odontoceti	ANCESTRAL SPECIES		ENSGT00940000158367	ENSGT01030000234540.E	ENSGT00940000155177.b	ENSGT00510000049596	ENSGT00940000154840.b	ENSGT01050000244827.B	ENSGT00940000160364	ENSGT00940000162602	ENSGT00390000019377.b	ENSGT00390000012496.a	ENSGT00390000007725.A.b	ENSGT00940000157504	ENSGT00940000158152	ENSGT00390000003368	ENSGT00940000163318	ENSGT00390000018003.a ##22	ENSGT00390000016950	ENSGT00940000158947	ENSGT00950000183011.c.a.a	ENSGT00950000182931.B.a.b	ENSGT00390000014494	ENSGT00940000156361.B	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b
Odontoceti_a	ANCESTRAL SPECIES		ENSGT00940000158367	ENSGT01030000234540.E	ENSGT00940000155177.b	ENSGT00510000049596	ENSGT00940000154840.b	ENSGT01050000244827.B	ENSGT00940000160364	ENSGT00940000162602	ENSGT00390000019377.b	ENSGT00390000012496.a	ENSGT00390000007725.A.b	ENSGT00940000157504	ENSGT00940000158152	ENSGT00390000003368	ENSGT00940000163318	ENSGT00390000018003.a ##22	ENSGT00390000016950	ENSGT00940000158947	ENSGT00950000183011.c.a.a	ENSGT00950000182931.B.a.b	ENSGT00390000014494	ENSGT00940000156361.B	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b
Odontoceti_b	ANCESTRAL SPECIES		ENSGT00940000153503.a.b.w.b	ENSGT01030000234540.E	ENSGT00940000155177.b	ENSGT00510000049596	ENSGT00940000154840.b	ENSGT01050000244827.B	ENSGT00940000160364	ENSGT00940000162602	ENSGT00390000019377.b	ENSGT00390000012496.a	ENSGT00390000007725.A.b	ENSGT00940000157504	ENSGT00940000158152	ENSGT00390000003368	ENSGT00940000163318	ENSGT00390000018003.a ##22	ENSGT00390000016950	ENSGT00940000158947	ENSGT00950000183011.c.a.a	ENSGT00950000182931.B.a.b	ENSGT00390000014494	ENSGT00940000156361.B	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b
Monodontidae	ANCESTRAL SPECIES		ENSGT00940000153503.a.b.w.b	ENSGT01030000234540.E	ENSGT00940000155177.b	ENSGT00510000049596	ENSGT00940000154840.b	ENSGT01050000244827.B	ENSGT00940000160364	ENSGT00940000162602	ENSGT00390000019377.b	ENSGT00390000012496.a	ENSGT00390000007725.A.b	ENSGT00940000157504	ENSGT00940000158152	ENSGT00390000003368	ENSGT00940000163318	ENSGT00390000018003.a ##22	ENSGT00390000016950	ENSGT00940000158947	ENSGT00950000183011.c.a.a	ENSGT00950000182931.B.a.b	ENSGT00390000014494	ENSGT00940000156361.B	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b
Narwhal	MODERN SPECIES	304	ENSMMNG00015003481	CD2 (ENSMMNG00015003495)	IGSF3 (ENSMMNG00015003523)	ENSMMNG00015003565	ATP1A1 (ENSMMNG00015003636)	MAB21L3 (ENSMMNG00015003735)	SLC22A15 (ENSMMNG00015003758)	NHLH2 (ENSMMNG00015003773)	CASQ2 (ENSMMNG00015003803)	VANGL1 (ENSMMNG00015003837)	NGF (ENSMMNG00015003864)	TSPAN2 (ENSMMNG00015003882)	TSHB (ENSMMNG00015003906)	SYCP1 (ENSMMNG00015003966)	ENSMMNG00015004059	SIKE1 (ENSMMNG00015015257) ##22	CSDE1 (ENSMMNG00015015367)	NRAS (ENSMMNG00015015474)	AMPD1 (ENSMMNG00015015503)	DENND2C (ENSMMNG00015015542)	BCAS2 (ENSMMNG00015015561)	TRIM33 (ENSMMNG00015015579)	SYT6 (ENSMMNG00015015657)	OLFML3 (ENSMMNG00015015695)	HIPK1 (ENSMMNG00015015746)	DCLRE1B (ENSMMNG00015015829)	AP4B1 (ENSMMNG00015015879)	BCL2L15 (ENSMMNG00015015979)	PTPN22 (ENSMMNG00015016097)	RSBN1 (ENSMMNG00015016184)	PHTF1 (ENSMMNG00015016285)
Beluga whale	MODERN SPECIES	74	ENSDLEG00000016812	CD2 (ENSDLEG00000016800)	IGSF3 (ENSDLEG00000016776)	CD58 (ENSDLEG00000016764)	ATP1A1 (ENSDLEG00000016719)	MAB21L3 (ENSDLEG00000016704)	SLC22A15 (ENSDLEG00000016683)	NHLH2 (ENSDLEG00000016681)	CASQ2 (ENSDLEG00000016613)	VANGL1 (ENSDLEG00000016587)	NGF (ENSDLEG00000016573)	TSPAN2 (ENSDLEG00000016564)	TSHB (ENSDLEG00000016555)	SYCP1 (ENSDLEG00000016413)	ENSDLEG00000016361	SIKE1 (ENSDLEG00000016348) ##22	CSDE1 (ENSDLEG00000016299)	NRAS (ENSDLEG00000016286)	AMPD1 (ENSDLEG00000016228)	DENND2C (ENSDLEG00000016190)	ENSDLEG00000016183	TRIM33 (ENSDLEG00000015645)	SYT6 (ENSDLEG00000015599)	OLFML3 (ENSDLEG00000015587)	HIPK1 (ENSDLEG00000015570)	DCLRE1B (ENSDLEG00000015558)	AP4B1 (ENSDLEG00000015542)	BCL2L15 (ENSDLEG00000015535)	ENSDLEG00000015527	ENSDLEG00000015519	RSBN1 (ENSDLEG00000015513)
Vaquita	MODERN SPECIES		IGSF3 (ENSPSNG00000003204)	ENSPSNG00000003168	ATP1A1 (ENSPSNG00000003098)	MAB21L3 (ENSPSNG00000003053)	SLC22A15 (ENSPSNG00000003035)	ENSPSNG00000003023	NHLH2 (ENSPSNG00000003008)	CASQ2 (ENSPSNG00000002987)	VANGL1 (ENSPSNG00000002964)	NGF (ENSPSNG00000002934)	ENSPSNG00000002914	TSPAN2 (ENSPSNG00000002875)	TSHB (ENSPSNG00000002854)	SYCP1 (ENSPSNG00000002726)	ENSPSNG00000002610	SIKE1 (ENSPSNG00000002576) ##22	CSDE1 (ENSPSNG00000002494)	NRAS (ENSPSNG00000002442)	AMPD1 (ENSPSNG00000002369)	DENND2C (ENSPSNG00000002295)	BCAS2 (ENSPSNG00000002254)	TRIM33 (ENSPSNG00000002067)	SYT6 (ENSPSNG00000001976)	OLFML3 (ENSPSNG00000001941)	HIPK1 (ENSPSNG00000001880)	DCLRE1B (ENSPSNG00000001829)	AP4B1 (ENSPSNG00000001771)	BCL2L15 (ENSPSNG00000001733)	PTPN22 (ENSPSNG00000001432)	RSBN1 (ENSPSNG00000001187)	PHTF1 (ENSPSNG00000001106)
Dolphin	MODERN SPECIES	3593																SIKE1 (ENSTTRG00000015586) ##22	CSDE1 (ENSTTRG00000015583)	NRAS (ENSTTRG00000015579)	AMPD1 (ENSTTRG00000015567)
Sperm whale	MODERN SPECIES	15	ATP1A1 (ENSPCTG00005018474)	SLC22A15 (ENSPCTG00005018619)	NHLH2 (ENSPCTG00005000232)	CASQ2 (ENSPCTG00005000263)	VANGL1 (ENSPCTG00005000293)	NGF (ENSPCTG00005000314)	TSPAN2 (ENSPCTG00005000352)	TSHB (ENSPCTG00005000377)	ENSPCTG00005000393	ENSPCTG00005000403	SYCP1 (ENSPCTG00005000455)	ENSPCTG00005000610	ENSPCTG00005000620	ENSPCTG00005000637	ENSPCTG00005000647	SIKE1 (ENSPCTG00005000661) ##22	CSDE1 (ENSPCTG00005000733)	ENSPCTG00005001006	ENSPCTG00005001015	AMPD1 (ENSPCTG00005001044)	DENND2C (ENSPCTG00005001128)	BCAS2 (ENSPCTG00005001172)	TRIM33 (ENSPCTG00005001206)	ENSPCTG00005001280	SYT6 (ENSPCTG00005001306)	OLFML3 (ENSPCTG00005001365)	HIPK1 (ENSPCTG00005001411)	DCLRE1B (ENSPCTG00005001534)	AP4B1 (ENSPCTG00005001566)	BCL2L15 (ENSPCTG00005001602)	PTPN22 (ENSPCTG00005001654)
Blue whale	MODERN SPECIES		PTGFRN (ENSBMSG00010000912)	CD2 (ENSBMSG00010000892)	IGSF3 (ENSBMSG00010000848)	CD58 (ENSBMSG00010000750)	ATP1A1 (ENSBMSG00010000656)	MAB21L3 (ENSBMSG00010000624)	SLC22A15 (ENSBMSG00010000600)	NHLH2 (ENSBMSG00010000584)	CASQ2 (ENSBMSG00010000556)	VANGL1 (ENSBMSG00010000530)	NGF (ENSBMSG00010000509)	TSPAN2 (ENSBMSG00010000486)	TSHB (ENSBMSG00010000462)	SYCP1 (ENSBMSG00010000313)	ENSBMSG00010000161	SIKE1 (ENSBMSG00010000128) ##22	CSDE1 (ENSBMSG00010000067)	NRAS (ENSBMSG00010000036)	AMPD1 (ENSBMSG00010009959)	DENND2C (ENSBMSG00010009901)	BCAS2 (ENSBMSG00010009881)	TRIM33 (ENSBMSG00010009825)	SYT6 (ENSBMSG00010009762)	OLFML3 (ENSBMSG00010009742)	HIPK1 (ENSBMSG00010009685)	DCLRE1B (ENSBMSG00010009657)	AP4B1 (ENSBMSG00010009638)	BCL2L15 (ENSBMSG00010009616)	PTPN22 (ENSBMSG00010009461)	ENSBMSG00010009419	PHTF1 (ENSBMSG00010009188)
Pecora	ANCESTRAL SPECIES	2	ENSGT00940000161722	ENSGT00940000158367	ENSGT01030000234540.E	ENSGT00940000155177.b	ENSGT00510000049596	ENSGT00940000154840.b	ENSGT01050000244827.B	ENSGT00940000160364	ENSGT00940000162602	ENSGT00390000019377.b	ENSGT00390000012496.a	ENSGT00390000007725.A.b	ENSGT00940000157504	ENSGT00940000158152	ENSGT00390000003368	ENSGT00390000018003.a ##22	ENSGT00390000016950	ENSGT00940000158947	ENSGT00950000183011.c.a.a	ENSGT00950000182931.B.a.b	ENSGT00390000014494.qb	ENSGT00940000156361.B	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b
Yarkand deer	MODERN SPECIES	12	CD2 (ENSCHYG00000013421)	IGSF3 (ENSCHYG00000013489)	ENSCHYG00000013650	ATP1A1 (ENSCHYG00000013765)	MAB21L3 (ENSCHYG00000014551)	ENSCHYG00000014605	ENSCHYG00000014737	NHLH2 (ENSCHYG00000014773)	CASQ2 (ENSCHYG00000014814)	VANGL1 (ENSCHYG00000014894)	NGF (ENSCHYG00000014981)	TSPAN2 (ENSCHYG00000015066)	TSHB (ENSCHYG00000015320)	SYCP1 (ENSCHYG00000015396)	ENSCHYG00000015651	SIKE1 (ENSCHYG00000015766) ##22	CSDE1 (ENSCHYG00000016050)	NRAS (ENSCHYG00000016503)	AMPD1 (ENSCHYG00000016598)	DENND2C (ENSCHYG00000017309)	ENSCHYG00000017515	ENSCHYG00000017608	TRIM33 (ENSCHYG00000017681)	SYT6 (ENSCHYG00000018604)	OLFML3 (ENSCHYG00000018919)	HIPK1 (ENSCHYG00000019014)	DCLRE1B (ENSCHYG00000019438)	AP4B1 (ENSCHYG00000019495)	BCL2L15 (ENSCHYG00000019696)	PTPN22 (ENSCHYG00000019743)	RSBN1 (ENSCHYG00000019892)
Percora_a	ANCESTRAL SPECIES	1	ENSGT00940000161722	ENSGT00940000158367	ENSGT01030000234540.E	ENSGT00940000155177.b	ENSGT00510000049596	ENSGT00940000154840.b	ENSGT01050000244827.B	ENSGT00940000160364	ENSGT00940000162602	ENSGT00390000019377.b	ENSGT00390000012496.a	ENSGT00390000007725.A.b	ENSGT00940000157504	ENSGT00940000158152	ENSGT00390000003368	ENSGT00390000018003.a ##22	ENSGT00390000016950	ENSGT00940000158947	ENSGT00950000183011.c.a.a	ENSGT00950000182931.B.a.b	ENSGT00390000014494.pb	ENSGT00390000014494.qb	ENSGT00940000156361.B	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a
Bovidae	ANCESTRAL SPECIES	1	ENSGT00940000161722	ENSGT00940000158367	ENSGT01030000234540.E	ENSGT00940000155177.b	ENSGT00510000049596	ENSGT00940000154840.b	ENSGT01050000244827.B	ENSGT00940000160364	ENSGT00940000162602	ENSGT00390000019377.b	ENSGT00390000012496.a	ENSGT00390000007725.A.b	ENSGT00940000157504	ENSGT00940000158152	ENSGT00390000003368	ENSGT00390000018003.a ##22	ENSGT00390000016950	ENSGT00940000158947	ENSGT00950000183011.c.a.a	ENSGT00950000182931.B.a.b	ENSGT00390000014494.pb	ENSGT00390000014494.qb	ENSGT00940000156361.B	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a
Caprinae	ANCESTRAL SPECIES	2	ENSGT00940000158367	ENSGT01030000234540.E	ENSGT00940000155177.b	ENSGT00510000049596	ENSGT00940000154840.b	ENSGT01050000244827.B	ENSGT00940000160364	ENSGT00940000155337.g.a	ENSGT00940000162602	ENSGT00390000019377.b	ENSGT00390000012496.a	ENSGT00390000007725.A.b	ENSGT00940000157504	ENSGT00940000158152	ENSGT00390000003368	ENSGT00390000018003.a ##22	ENSGT00390000016950	ENSGT00940000158947	ENSGT00950000183011.c.a.a	ENSGT00950000182931.B.a.b	ENSGT00940000153311.a.b.a.i.b.b	ENSGT00390000014494.qb	ENSGT00940000156361.B	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00390000008767.a.a.a.b.f.k.b	ENSGT00940000160958
Rambouillet Sheep	MODERN SPECIES		IGSF3 (ENSOARG00020000764)	ENSOARG00020000743	ENSOARG00020000728	ATP1A1 (ENSOARG00020000332)	ENSOARG00020000242	MAB21L3 (ENSOARG00020000215)	SLC22A15 (ENSOARG00020000158)	ENSOARG00020000086	NHLH2 (ENSOARG00020022935)	CASQ2 (ENSOARG00020022877)	VANGL1 (ENSOARG00020022787)	NGF (ENSOARG00020022760)	TSPAN2 (ENSOARG00020022702)	TSHB (ENSOARG00020022677)	SYCP1 (ENSOARG00020022243)	SIKE1 (ENSOARG00020022151) ##22	CSDE1 (ENSOARG00020021728)	NRAS (ENSOARG00020021627)	AMPD1 (ENSOARG00020021414)	DENND2C (ENSOARG00020021315)	ENSOARG00020021275	BCAS2 (ENSOARG00020021185)	TRIM33 (ENSOARG00020020876)	SYT6 (ENSOARG00020020593)	OLFML3 (ENSOARG00020020553)	HIPK1 (ENSOARG00020020282)	DCLRE1B (ENSOARG00020020246)	AP4B1 (ENSOARG00020020107)	BCL2L15 (ENSOARG00020020041)	ENSOARG00020019995	RSBN1 (ENSOARG00020016188)
Goat	MODERN SPECIES	22	IGSF3 (ENSCHIG00000003902)	ENSCHIG00000022779	ATP1A1 (ENSCHIG00000017191)	ENSCHIG00000005925	MAB21L3 (ENSCHIG00000019025)	SLC22A15 (ENSCHIG00000022810)	ENSCHIG00000008508	NHLH2 (ENSCHIG00000007315)	ENSCHIG00000017520	CASQ2 (ENSCHIG00000014376)	VANGL1 (ENSCHIG00000011522)	NGF (ENSCHIG00000007731)	TSPAN2 (ENSCHIG00000007588)	TSHB (ENSCHIG00000007505)	SYCP1 (ENSCHIG00000019909)	SIKE1 (ENSCHIG00000014644) ##22	CSDE1 (ENSCHIG00000017250)	NRAS (ENSCHIG00000023175)	AMPD1 (ENSCHIG00000015980)	DENND2C (ENSCHIG00000022818)	ENSCHIG00000005596	ENSCHIG00000022448	ENSCHIG00000014762	TRIM33 (ENSCHIG00000012017)	ENSCHIG00000013914	SYT6 (ENSCHIG00000009583)	OLFML3 (ENSCHIG00000025685)	HIPK1 (ENSCHIG00000007296)	DCLRE1B (ENSCHIG00000023732)	AP4B1 (ENSCHIG00000022344)	BCL2L15 (ENSCHIG00000012371)
Bovinae	ANCESTRAL SPECIES	1	ENSGT00940000158367	ENSGT01030000234540.E	ENSGT00940000155177.b	ENSGT00510000049596	ENSGT00940000154840.b	ENSGT01050000244827.B	ENSGT00940000160364	ENSGT00940000162602	ENSGT00390000019377.b	ENSGT00390000012496.a	ENSGT00390000007725.A.b	ENSGT00940000157504	ENSGT00940000158152	ENSGT00390000003368	ENSGT00390000009724.l.w.b.c.a	ENSGT00390000018003.a ##22	ENSGT00390000016950.h	ENSGT00390000016950.g	ENSGT00940000158947	ENSGT00950000183011.c.a.a	ENSGT00950000182931.B.a.b	ENSGT00390000014494.pb	ENSGT00940000153311.a.b.a.i.b.b	ENSGT00390000014494.qb	ENSGT00940000156361.B	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096
Bos	ANCESTRAL SPECIES		ENSGT01030000234540.E	ENSGT00940000155177.b	ENSGT00510000049596	ENSGT00940000154840.b	ENSGT01100000263481.n.a.a.a.a.a.a.a.a.a.b.a.a	ENSGT01050000244827.B	ENSGT00940000160364	ENSGT00940000162602	ENSGT00390000019377.b	ENSGT00390000012496.a	ENSGT00390000007725.A.b	ENSGT00940000157504	ENSGT00940000158152	ENSGT00390000003368	ENSGT00390000009724.l.w.b.c.a	ENSGT00390000018003.a ##22	ENSGT00390000016950.h	ENSGT00390000016950.g	ENSGT00940000158947	ENSGT00950000183011.c.a.a	ENSGT00950000182931.B.a.b	ENSGT00390000014494.pb	ENSGT00940000153311.a.b.a.i.b.b	ENSGT00390000014494.qb	ENSGT00940000156361.B	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096
Bos_b	ANCESTRAL SPECIES	1	ENSGT00940000155177.b	ENSGT00510000049596	ENSGT00940000154840.b	ENSGT01100000263481.n.a.a.a.a.a.a.a.a.a.b.a.a	ENSGT01050000244827.B	ENSGT00940000160364	ENSGT00940000154175.i.b.l.b	ENSGT00940000162602	ENSGT00390000019377.b	ENSGT00390000012496.a	ENSGT00390000007725.A.b	ENSGT00940000157504	ENSGT00940000158152	ENSGT00390000003368	ENSGT00390000009724.l.w.b.c.a	ENSGT00390000018003.a ##22	ENSGT00390000016950.g	ENSGT00940000158947	ENSGT00950000183011.c.a.a	ENSGT00950000182931.B.a.b	ENSGT00390000014494.pb	ENSGT00940000153311.a.b.a.i.b.b	ENSGT00940000156361.B	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00390000018741.i.a	ENSGT00940000160958
Hybrid Bos Indicus	MODERN SPECIES	22	ENSBIXG00005003478	ATP1A1 (ENSBIXG00005020549)	ENSBIXG00005020442	MAB21L3 (ENSBIXG00005003444)	SLC22A15 (ENSBIXG00005020361)	ENSBIXG00005020331	NHLH2 (ENSBIXG00005020316)	CASQ2 (ENSBIXG00005020297)	VANGL1 (ENSBIXG00005020258)	ENSBIXG00005005532	NGF (ENSBIXG00005020234)	TSPAN2 (ENSBIXG00005003349)	TSHB (ENSBIXG00005020177)	SYCP1 (ENSBIXG00005003311)	ENSBIXG00005020069	SIKE1 (ENSBIXG00005020065) ##22	CSDE1 (ENSBIXG00005002632)	NRAS (ENSBIXG00005019184)	AMPD1 (ENSBIXG00005019165)	DENND2C (ENSBIXG00005019102)	BCAS2 (ENSBIXG00005002655)	ENSBIXG00005019022	TRIM33 (ENSBIXG00005018947)	SYT6 (ENSBIXG00005018833)	OLFML3 (ENSBIXG00005018706)	HIPK1 (ENSBIXG00005018665)	DCLRE1B (ENSBIXG00005018523)	AP4B1 (ENSBIXG00005002992)	BCL2L15 (ENSBIXG00005018413)	ENSBIXG00005002973	PTPN22 (ENSBIXG00005018325)
Cow	MODERN SPECIES	22	IGSF3 (ENSBTAG00000004849)	CD58 (ENSBTAG00000040131)	ATP1A1 (ENSBTAG00000001246)	ENSBTAG00000050694	MAB21L3 (ENSBTAG00000001406)	SLC22A15 (ENSBTAG00000000664)	ENSBTAG00000051199	NHLH2 (ENSBTAG00000015067)	CASQ2 (ENSBTAG00000011500)	VANGL1 (ENSBTAG00000005788)	NGF (ENSBTAG00000007446)	TSPAN2 (ENSBTAG00000015961)	TSHB (ENSBTAG00000006295)	SYCP1 (ENSBTAG00000032071)	ENSBTAG00000032057	SIKE1 (ENSBTAG00000015977) ##22	CSDE1 (ENSBTAG00000000678)	NRAS (ENSBTAG00000046797)	AMPD1 (ENSBTAG00000011548)	DENND2C (ENSBTAG00000012194)	BCAS2 (ENSBTAG00000016705)	ENSBTAG00000048431	TRIM33 (ENSBTAG00000001499)	SYT6 (ENSBTAG00000018881)	OLFML3 (ENSBTAG00000011327)	HIPK1 (ENSBTAG00000011322)	DCLRE1B (ENSBTAG00000003616)	AP4B1 (ENSBTAG00000003614)	BCL2L15 (ENSBTAG00000012419)	ENSBTAG00000050106	PTPN22 (ENSBTAG00000019617)
Bos_a	ANCESTRAL SPECIES	32	ENSGT00940000158367	ENSGT01030000234540.E	ENSGT00940000155177.b	ENSGT00510000049596	ENSGT00940000154840.b	ENSGT01100000263481.n.a.a.a.a.a.a.a.a.a.b.a.a	ENSGT01050000244827.B	ENSGT00940000160364	ENSGT00940000162602	ENSGT00390000019377.b	ENSGT00390000012496.a	ENSGT00390000007725.A.b	ENSGT00940000157504	ENSGT00940000158152	ENSGT00390000003368	ENSGT00390000018003.a ##22	ENSGT00390000016950.h	ENSGT00940000158947	ENSGT00950000183011.c.a.a	ENSGT00950000182931.B.a.b	ENSGT00940000153311.a.b.a.i.b.b	ENSGT00390000014494.qb	ENSGT00940000156361.B	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00940000156586.j	ENSGT00390000018096	ENSGT00390000018741.i.a
Domestic yak	MODERN SPECIES	22	ATP1A1 (ENSBGRG00000008222)	ENSBGRG00000008185	MAB21L3 (ENSBGRG00000008095)	ENSBGRG00000008009	SLC22A15 (ENSBGRG00000007927)	NHLH2 (ENSBGRG00000007908)	CASQ2 (ENSBGRG00000007757)	VANGL1 (ENSBGRG00000007582)	ENSBGRG00000007514	NGF (ENSBGRG00000007446)	TSPAN2 (ENSBGRG00000007175)	ENSBGRG00000007154	TSHB (ENSBGRG00000007103)	SYCP1 (ENSBGRG00000006966)	ENSBGRG00000006936	SIKE1 (ENSBGRG00000006884) ##22	ENSBGRG00000006823	NRAS (ENSBGRG00000006784)	AMPD1 (ENSBGRG00000006749)	DENND2C (ENSBGRG00000006623)	ENSBGRG00000006605	BCAS2 (ENSBGRG00000006573)	TRIM33 (ENSBGRG00000006076)	SYT6 (ENSBGRG00000005986)	OLFML3 (ENSBGRG00000005963)	HIPK1 (ENSBGRG00000005851)	DCLRE1B (ENSBGRG00000005803)	AP4B1 (ENSBGRG00000005734)	ENSBGRG00000005701	BCL2L15 (ENSBGRG00000005689)	ENSBGRG00000005668
Wild yak	MODERN SPECIES	2896													TSPAN2 (ENSBMUG00000005145)	TSHB (ENSBMUG00000005155)	SYCP1 (ENSBMUG00000005245)	SIKE1 (ENSBMUG00000005322) ##22	CSDE1 (ENSBMUG00000005503)
American bison	MODERN SPECIES	3366	PTGFRN (ENSBBBG00000002392)	CD2 (ENSBBBG00000012471)	IGSF3 (ENSBBBG00000012453)	ENSBBBG00000012393	ATP1A1 (ENSBBBG00000012376)	MAB21L3 (ENSBBBG00000002319)	SLC22A15 (ENSBBBG00000012276)	ENSBBBG00000012213	CASQ2 (ENSBBBG00000012205)	VANGL1 (ENSBBBG00000012189)	NGF (ENSBBBG00000012158)	TSPAN2 (ENSBBBG00000012145)	TSHB (ENSBBBG00000012103)	SYCP1 (ENSBBBG00000012065)	ENSBBBG00000011898	SIKE1 (ENSBBBG00000011890) ##22	ENSBBBG00000011846	NRAS (ENSBBBG00000011637)	AMPD1 (ENSBBBG00000011610)	DENND2C (ENSBBBG00000002113)	ENSBBBG00000007246	ENSBBBG00000002083	TRIM33 (ENSBBBG00000002071)	SYT6 (ENSBBBG00000011215)	OLFML3 (ENSBBBG00000007646)	HIPK1 (ENSBBBG00000011140)	DCLRE1B (ENSBBBG00000001960)	AP4B1 (ENSBBBG00000010957)	BCL2L15 (ENSBBBG00000007163)	ENSBBBG00000010888	PTPN22 (ENSBBBG00000010840)
Siberian musk deer	MODERN SPECIES	98	CD101 (ENSMMSG00000013054)	PTGFRN (ENSMMSG00000013024)	ENSMMSG00000013017	IGSF3 (ENSMMSG00000012976)	ENSMMSG00000012961	ATP1A1 (ENSMMSG00000012825)	MAB21L3 (ENSMMSG00000012783)	SLC22A15 (ENSMMSG00000012704)	NHLH2 (ENSMMSG00000012682)	CASQ2 (ENSMMSG00000012652)	VANGL1 (ENSMMSG00000012598)	NGF (ENSMMSG00000012583)	TSPAN2 (ENSMMSG00000012545)	TSHB (ENSMMSG00000012517)	SYCP1 (ENSMMSG00000012181)	SIKE1 (ENSMMSG00000012115) ##22	CSDE1 (ENSMMSG00000011841)	NRAS (ENSMMSG00000011786)	AMPD1 (ENSMMSG00000011611)	DENND2C (ENSMMSG00000011535)	ENSMMSG00000011497	BCAS2 (ENSMMSG00000011440)	TRIM33 (ENSMMSG00000011404)	SYT6 (ENSMMSG00000011265)	OLFML3 (ENSMMSG00000011221)	HIPK1 (ENSMMSG00000011030)	ENSMMSG00000010993	DCLRE1B (ENSMMSG00000010980)	AP4B1 (ENSMMSG00000010901)	BCL2L15 (ENSMMSG00000010879)	ENSMMSG00000010867
Laurasiatheria_b	ANCESTRAL SPECIES		ENSGT00940000158367	ENSGT01030000234540.E	ENSGT00940000155177.b	ENSGT00510000049596	ENSGT00940000154840.b	ENSGT01050000244827.B	ENSGT00940000160364	ENSGT00940000162602	ENSGT00390000019377.b	ENSGT00390000012496.a	ENSGT00390000007725.A.b	ENSGT00940000157504	ENSGT00940000158152	ENSGT00390000003368	ENSGT00940000163318	ENSGT00390000018003.a ##22	ENSGT00390000016950	ENSGT00940000158947	ENSGT00950000183011.c.a.a	ENSGT00950000182931.B.a.b	ENSGT00390000014494	ENSGT00940000156361.B	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b
Carnivora	ANCESTRAL SPECIES	1	ENSGT01030000234540.E	ENSGT00940000155177.b	ENSGT00510000049596	ENSGT00940000154840.b	ENSGT01050000244827.B	ENSGT00940000160364	ENSGT00940000162602	ENSGT00390000019377.b	ENSGT00390000012496.a	ENSGT00390000007725.A.b	ENSGT00940000157504	ENSGT00940000158152	ENSGT00390000003368	ENSGT00940000163318	ENSGT00940000154158.l.c.a	ENSGT00390000018003.a ##22	ENSGT00390000016950	ENSGT00940000158947	ENSGT00950000183011.c.a.a	ENSGT00950000182931.B.a.b	ENSGT00390000014494	ENSGT00940000156361.B	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b
Felidae	ANCESTRAL SPECIES	10	ENSGT01030000234540.E	ENSGT00940000155177.b	ENSGT00510000049596	ENSGT00940000154840.b	ENSGT01050000244827.B	ENSGT00940000160364	ENSGT00940000162602	ENSGT00390000019377.b	ENSGT00390000012496.a	ENSGT00390000007725.A.b	ENSGT00940000157504	ENSGT00940000158152	ENSGT00390000003368	ENSGT00940000163318	ENSGT00940000154158.l.c.a	ENSGT00390000018003.a ##22	ENSGT00390000016950	ENSGT00940000158947.e	ENSGT00950000183011.c.a.a	ENSGT00950000182931.B.a.b	ENSGT00390000014494	ENSGT00940000156361.B	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b
Panthera	ANCESTRAL SPECIES	4	ENSGT01030000234540.E	ENSGT00940000155177.b	ENSGT00510000049596	ENSGT00940000154840.b	ENSGT01050000244827.B	ENSGT00940000160364	ENSGT00940000162602	ENSGT00390000019377.b	ENSGT00390000012496.a	ENSGT00390000007725.A.b	ENSGT00940000157504	ENSGT00940000158152	ENSGT00390000003368	ENSGT00940000163318	ENSGT00940000154158.l.c.a	ENSGT00390000018003.a ##22	ENSGT00390000016950	ENSGT00940000158947.e	ENSGT00950000183011.c.a.a	ENSGT00950000182931.B.a.b	ENSGT00390000014494	ENSGT00940000156361.B	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b
Panthera_a	ANCESTRAL SPECIES	11	ENSGT00940000155177.b	ENSGT00510000049596	ENSGT00940000154840.b	ENSGT01050000244827.B	ENSGT00940000160364	ENSGT00940000162602	ENSGT00390000019377.b	ENSGT00390000012496.a	ENSGT00390000007725.A.b	ENSGT00950000183010.a.a.a.b.a.a.b.a.b.b.a	ENSGT00940000157504	ENSGT00940000158152	ENSGT00390000003368	ENSGT00940000163318	ENSGT00940000154158.l.c.a	ENSGT00390000018003.a ##22	ENSGT00390000016950	ENSGT00940000158947.e	ENSGT00950000183011.c.a.a	ENSGT00950000182931.B.a.b	ENSGT00390000014494	ENSGT00940000156361.B	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b
lion	MODERN SPECIES	8	IGSF3 (ENSPLOG00000013549)	ENSPLOG00000013611	ATP1A1 (ENSPLOG00000013723)	MAB21L3 (ENSPLOG00000014017)	SLC22A15 (ENSPLOG00000014089)	NHLH2 (ENSPLOG00000014240)	CASQ2 (ENSPLOG00000014262)	VANGL1 (ENSPLOG00000014377)	NGF (ENSPLOG00000014389)	ENSPLOG00000014415	TSPAN2 (ENSPLOG00000014519)	TSHB (ENSPLOG00000014568)	SYCP1 (ENSPLOG00000014657)	ENSPLOG00000015234	ENSPLOG00000015461	SIKE1 (ENSPLOG00000015473) ##22	CSDE1 (ENSPLOG00000015680)	NRAS (ENSPLOG00000016315)	AMPD1 (ENSPLOG00000016449)	DENND2C (ENSPLOG00000016707)	BCAS2 (ENSPLOG00000016764)	ENSPLOG00000016808	TRIM33 (ENSPLOG00000016841)	SYT6 (ENSPLOG00000017004)	OLFML3 (ENSPLOG00000017170)	HIPK1 (ENSPLOG00000017319)	DCLRE1B (ENSPLOG00000017828)	AP4B1 (ENSPLOG00000017914)	BCL2L15 (ENSPLOG00000018045)	PTPN22 (ENSPLOG00000018355)	RSBN1 (ENSPLOG00000019230)
leopard	MODERN SPECIES	31	CD2 (ENSPPRG00000003530)	IGSF3 (ENSPPRG00000004364)	ATP1A1 (ENSPPRG00000008177)	MAB21L3 (ENSPPRG00000008518)	SLC22A15 (ENSPPRG00000008983)	NHLH2 (ENSPPRG00000016591)	CASQ2 (ENSPPRG00000009697)	VANGL1 (ENSPPRG00000010871)	NGF (ENSPPRG00000016689)	ENSPPRG00000016776	TSPAN2 (ENSPPRG00000012267)	TSHB (ENSPPRG00000012835)	SYCP1 (ENSPPRG00000023786)	ENSPPRG00000000888	ENSPPRG00000001280	SIKE1 (ENSPPRG00000001473) ##22	CSDE1 (ENSPPRG00000006747)	ENSPPRG00000007102	AMPD1 (ENSPPRG00000008277)	DENND2C (ENSPPRG00000011320)	BCAS2 (ENSPPRG00000012152)	TRIM33 (ENSPPRG00000012753)	SYT6 (ENSPPRG00000014396)	OLFML3 (ENSPPRG00000017719)	HIPK1 (ENSPPRG00000003595)	DCLRE1B (ENSPPRG00000004410)	AP4B1 (ENSPPRG00000005145)	BCL2L15 (ENSPPRG00000005485)	ENSPPRG00000006556	RSBN1 (ENSPPRG00000008959)	PHTF1 (ENSPPRG00000013575)
Tiger	MODERN SPECIES	81											NGF (ENSPTIG00000007033)	TSPAN2 (ENSPTIG00000009986)	TSHB (ENSPTIG00000011562)	SYCP1 (ENSPTIG00000011859)	ENSPTIG00000007154	SIKE1 (ENSPTIG00000014052) ##22	CSDE1 (ENSPTIG00000015468)	NRAS (ENSPTIG00000018869)	AMPD1 (ENSPTIG00000020378)	DENND2C (ENSPTIG00000021847)	BCAS2 (ENSPTIG00000006396)	TRIM33 (ENSPTIG00000008054)	SYT6 (ENSPTIG00000012950)	OLFML3 (ENSPTIG00000014141)	HIPK1 (ENSPTIG00000015933)	DCLRE1B (ENSPTIG00000007479)	AP4B1 (ENSPTIG00000008022)	BCL2L15 (ENSPTIG00000010775)	ENSPTIG00000011661	RSBN1 (ENSPTIG00000012973)	PHTF1 (ENSPTIG00000013775)
Cat	MODERN SPECIES	239	CD2 (ENSFCAG00000001976)	IGSF3 (ENSFCAG00000011343)	CD58 (ENSFCAG00000025590)	ATP1A1 (ENSFCAG00000013378)	MAB21L3 (ENSFCAG00000031670)	SLC22A15 (ENSFCAG00000022423)	NHLH2 (ENSFCAG00000028313)	CASQ2 (ENSFCAG00000025977)	VANGL1 (ENSFCAG00000010493)	NGF (ENSFCAG00000045820)	TSPAN2 (ENSFCAG00000029385)	TSHB (ENSFCAG00000010405)	SYCP1 (ENSFCAG00000023028)	ENSFCAG00000028538	ENSFCAG00000041311	SIKE1 (ENSFCAG00000031592) ##22	CSDE1 (ENSFCAG00000029266)	NRAS (ENSFCAG00000037994)	AMPD1 (ENSFCAG00000010509)	DENND2C (ENSFCAG00000010508)	BCAS2 (ENSFCAG00000010507)	TRIM33 (ENSFCAG00000038306)	SYT6 (ENSFCAG00000006734)	OLFML3 (ENSFCAG00000009243)	HIPK1 (ENSFCAG00000009242)	DCLRE1B (ENSFCAG00000040507)	AP4B1 (ENSFCAG00000009240)	BCL2L15 (ENSFCAG00000009239)	PTPN22 (ENSFCAG00000009238)	RSBN1 (ENSFCAG00000027733)	PHTF1 (ENSFCAG00000028605)
Caniformia	ANCESTRAL SPECIES	2	ENSGT01030000234540.E	ENSGT00940000155177.b	ENSGT00510000049596	ENSGT00940000154840.b	ENSGT01050000244827.B	ENSGT00940000160364	ENSGT00940000162602	ENSGT00390000019377.b	ENSGT00390000012496.a	ENSGT00390000007725.A.b	ENSGT00940000157504	ENSGT00940000158152	ENSGT00390000003368	ENSGT00940000163318	ENSGT00940000154158.l.c.a	ENSGT00390000018003.a ##22	ENSGT00390000016950	ENSGT00940000158947.g.b	ENSGT00950000183011.c.a.a	ENSGT00950000182931.B.a.b	ENSGT00390000014494	ENSGT00940000156361.B	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b
Caniformia_b	ANCESTRAL SPECIES	1	ENSGT00940000158367	ENSGT01030000234540.E	ENSGT00940000155177.b	ENSGT00510000049596	ENSGT00940000154840.b	ENSGT01050000244827.B	ENSGT00940000160364	ENSGT00940000162602	ENSGT00390000019377.b	ENSGT00390000012496.a	ENSGT00390000007725.A.b	ENSGT00940000157504	ENSGT00940000158152	ENSGT00390000003368	ENSGT00940000163318	ENSGT00390000018003.a ##22	ENSGT00390000016950	ENSGT00940000158947.g.b	ENSGT00950000183011.c.a.a	ENSGT00950000182931.B.a.b	ENSGT00390000014494	ENSGT00940000156361.B	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b
Mustelinae	ANCESTRAL SPECIES	47	ENSGT01030000234540.E	ENSGT00940000155177.b	ENSGT00510000049596	ENSGT00940000154840.b	ENSGT01050000244827.B	ENSGT00940000160364	ENSGT00940000162602	ENSGT00390000019377.b	ENSGT00390000012496.a	ENSGT00390000007725.A.b	ENSGT00940000157504	ENSGT00940000158152	ENSGT00390000003368	ENSGT00940000163318	ENSGT00940000154158.l.c.a	ENSGT00390000018003.a ##22	ENSGT00390000016950	ENSGT00940000158947.g.b	ENSGT00950000183011.c.a.a	ENSGT00950000182931.B.a.b	ENSGT00390000014494	ENSGT00940000156361.B	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b
American mink	DUPLICATION
American mink	MODERN SPECIES	348										NGF (ENSNVIG00000006084)	TSPAN2 (ENSNVIG00000006055)	TSHB (ENSNVIG00000006041)	SYCP1 (ENSNVIG00000005815)	ENSNVIG00000005738	ENSNVIG00000005722	ENSNVIG00000005702 ##22	CSDE1 (ENSNVIG00000005322)	RASN (ENSNVIG00000005289)	AMPD1 (ENSNVIG00000005244)	DENND2C (ENSNVIG00000005147)	BCAS2 (ENSNVIG00000005126)	ENSNVIG00000005101	TRIM33 (ENSNVIG00000005041)	SYT6 (ENSNVIG00000004978)	OLFML3 (ENSNVIG00000004948)	HIPK1 (ENSNVIG00000004780)	DCLRE1B (ENSNVIG00000004756)	AP4B1 (ENSNVIG00000004707)	BCL2L15 (ENSNVIG00000004682)	PTPN22 (ENSNVIG00000004293)	RSBN1 (ENSNVIG00000004248)
American mink	MODERN SPECIES	145										ENSNVIG00000014388	TBC1D4 (ENSNVIG00000014424)	COMMD6 (ENSNVIG00000014639)	UCHL3 (ENSNVIG00000014646)	ENSNVIG00000014672	LMO7 (ENSNVIG00000014707)	ENSNVIG00000014986 ##22	KCTD12 (ENSNVIG00000014999)	ACOD1 (ENSNVIG00000015009)	CLN5 (ENSNVIG00000015035)	FBXL3 (ENSNVIG00000015051)	MYCBP2 (ENSNVIG00000015073)	ENSNVIG00000015322	SLAIN1 (ENSNVIG00000015411)	EDNRB (ENSNVIG00000015496)	POU4F1 (ENSNVIG00000015568)	RN219 (ENSNVIG00000015574)
Ferret	MODERN SPECIES	312													ENSMPUG00000005789	ENSMPUG00000005782	ENSMPUG00000005775	SIKE1 (ENSMPUG00000005771) ##22	CSDE1 (ENSMPUG00000005753)	ENSMPUG00000005744	AMPD1 (ENSMPUG00000005734)	DENND2C (ENSMPUG00000005649)	BCAS2 (ENSMPUG00000005642)	TRIM33 (ENSMPUG00000005413)	SYT6 (ENSMPUG00000005408)	OLFML3 (ENSMPUG00000005367)	HIPK1 (ENSMPUG00000005355)	DCLRE1B (ENSMPUG00000005347)	AP4B1 (ENSMPUG00000005335)	BCL2L15 (ENSMPUG00000005322)	PTPN22 (ENSMPUG00000005305)	RSBN1 (ENSMPUG00000005293)	PHTF1 (ENSMPUG00000005281)
Ursidae	ANCESTRAL SPECIES	32	ENSGT01030000234540.E	ENSGT00940000155177.b	ENSGT00510000049596	ENSGT00940000154840.b	ENSGT01050000244827.B	ENSGT00940000160364	ENSGT00940000162602	ENSGT00390000019377.b	ENSGT00390000012496.a	ENSGT00390000007725.A.b	ENSGT00940000157504	ENSGT00940000158152	ENSGT00390000003368	ENSGT00940000163318	ENSGT00940000154158.l.c.a	ENSGT00390000018003.a ##22	ENSGT00390000016950	ENSGT00940000158947.g.b	ENSGT00950000183011.c.a.a	ENSGT00950000182931.B.a.b	ENSGT00390000014494	ENSGT00950000185728	ENSGT00940000156361.B	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a
Giant Panda	MODERN SPECIES	11	ENSAMEG00000005177	IGSF3 (ENSAMEG00000005171)	ENSAMEG00000005165	ATP1A1 (ENSAMEG00000005071)	MAB21L3 (ENSAMEG00000005068)	SLC22A15 (ENSAMEG00000026074)	NHLH2 (ENSAMEG00000010851)	CASQ2 (ENSAMEG00000029848)	VANGL1 (ENSAMEG00000010898)	NGF (ENSAMEG00000030308)	ENSAMEG00000010910	TSHB (ENSAMEG00000010929)	SYCP1 (ENSAMEG00000017087)	ENSAMEG00000017106	ENSAMEG00000026022	SIKE1 (ENSAMEG00000017123) ##22	CSDE1 (ENSAMEG00000017129)	NRAS (ENSAMEG00000017134)	ENSAMEG00000028734	AMPD1 (ENSAMEG00000017140)	DENND2C (ENSAMEG00000017165)	BCAS2 (ENSAMEG00000017176)	ENSAMEG00000027662	ENSAMEG00000027179	TRIM33 (ENSAMEG00000000663)	SYT6 (ENSAMEG00000000702)	OLFML3 (ENSAMEG00000003210)	HIPK1 (ENSAMEG00000003215)	AP4B1 (ENSAMEG00000003279)	BCL2L15 (ENSAMEG00000003302)	PTPN22 (ENSAMEG00000003307)
Ursus	ANCESTRAL SPECIES	107	ENSGT01030000234540.E	ENSGT00940000155177.b	ENSGT00510000049596	ENSGT00940000154840.b	ENSGT01050000244827.B	ENSGT00940000160364	ENSGT00940000162602	ENSGT00390000019377.b	ENSGT00390000012496.a	ENSGT00390000007725.A.b	ENSGT00940000157504	ENSGT00940000158152	ENSGT00390000003368	ENSGT00940000163318	ENSGT00940000154158.l.c.a	ENSGT00390000018003.a ##22	ENSGT00390000016950.l	ENSGT00390000016950.k.a	ENSGT00940000158947.g.b	ENSGT00950000183011.c.a.a	ENSGT00950000182931.B.a.b	ENSGT00390000014494	ENSGT00940000156361.B	ENSGT00950000185728	ENSGT00940000157665.c	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958
American black bear	MODERN SPECIES	4131														ENSUAMG00000021786	ENSUAMG00000021785	SIKE1 (ENSUAMG00000021783) ##22	ENSUAMG00000021782	ENSUAMG00000021779
Polar bear	MODERN SPECIES	209				ENSUMAG00000011330	ATP1A1 (ENSUMAG00000011338)	MAB21L3 (ENSUMAG00000011357)	SLC22A15 (ENSUMAG00000011378)	CASQ2 (ENSUMAG00000011472)	VANGL1 (ENSUMAG00000011478)	NGF (ENSUMAG00000011483)	TSPAN2 (ENSUMAG00000011490)	TSHB (ENSUMAG00000011510)	SYCP1 (ENSUMAG00000011531)	ENSUMAG00000011659	ENSUMAG00000011697	SIKE1 (ENSUMAG00000011701) ##22	ENSUMAG00000011713	ENSUMAG00000011714	NRAS (ENSUMAG00000011722)	AMPD1 (ENSUMAG00000011730)	DENND2C (ENSUMAG00000011794)	BCAS2 (ENSUMAG00000011929)	ENSUMAG00000011934	TRIM33 (ENSUMAG00000011998)	ENSUMAG00000012773	SYT6 (ENSUMAG00000012787)	OLFML3 (ENSUMAG00000012812)	HIPK1 (ENSUMAG00000012833)	DCLRE1B (ENSUMAG00000012969)	AP4B1 (ENSUMAG00000012985)	BCL2L15 (ENSUMAG00000013000)
Canidae	ANCESTRAL SPECIES	25	ENSGT00940000155177.b	ENSGT00510000049596	ENSGT00940000154840.b	ENSGT00390000013931.a.a.a.a	ENSGT01050000244827.B	ENSGT00940000160364	ENSGT00940000162602	ENSGT00390000019377.b	ENSGT00390000012496.a	ENSGT00390000007725.A.b	ENSGT00940000157504	ENSGT00940000158152	ENSGT00390000003368	ENSGT00940000163318	ENSGT00940000154158.l.c.a	ENSGT00390000018003.a ##22	ENSGT00390000016950	ENSGT00940000158947.g.a	ENSGT00950000183011.c.a.a	ENSGT00950000182931.B.a.b	ENSGT00390000014494	ENSGT00940000156361.B	ENSGT00940000155712.g.b.a	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a
Canis_lupus	ANCESTRAL SPECIES	10	ENSGT00510000049596	ENSGT00940000154840.b	ENSGT00390000013931.a.a.a.a.b	ENSGT01050000244827.B	ENSGT00940000160364	ENSGT00940000162602	ENSGT00390000019377.b	ENSGT00390000012496.a	ENSGT00390000007725.A.b	ENSGT00940000157504	ENSGT00940000158152	ENSGT00390000003368	ENSGT00940000163318	ENSGT00950000182967.a.a.a.a.a.a.c.b.a.a	ENSGT00940000154158.l.c.a	ENSGT00390000018003.a ##22	ENSGT00390000016950	ENSGT00940000158947.g.a	ENSGT00950000183011.c.a.a	ENSGT00950000182931.B.a.b	ENSGT00390000014494	ENSGT00940000156361.B	ENSGT00940000155712.g.b.a	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a
Dingo	MODERN SPECIES	223	ENSCAFG00020020844	ATP1A1 (ENSCAFG00020020858)	MAB21L3 (ENSCAFG00020020870)	SLC22A15 (ENSCAFG00020020878)	NHLH2 (ENSCAFG00020020915)	CASQ2 (ENSCAFG00020020924)	VANGL1 (ENSCAFG00020020963)	NGF (ENSCAFG00020020970)	TSPAN2 (ENSCAFG00020020982)	TSHB (ENSCAFG00020020987)	SYCP1 (ENSCAFG00020020995)	ENSCAFG00020021008	ENSCAFG00020000163	ENSCAFG00020000446	ENSCAFG00020000466	SIKE1 (ENSCAFG00020000472) ##22	CSDE1 (ENSCAFG00020000481)	NRAS (ENSCAFG00020000486)	AMPD1 (ENSCAFG00020000496)	ENSCAFG00020000589	DENND2C (ENSCAFG00020000607)	BCAS2 (ENSCAFG00020000774)	ENSCAFG00020000776	ENSCAFG00020000793	ENSCAFG00020000801	SYT6 (ENSCAFG00020000821)	OLFML3 (ENSCAFG00020000921)	HIPK1 (ENSCAFG00020000962)	DCLRE1B (ENSCAFG00020001384)	AP4B1 (ENSCAFG00020001386)	BCL2L15 (ENSCAFG00020001388)
Dog	MODERN SPECIES	8	ENSCAFG00845028320	MAB21L3 (ENSCAFG00845028265)	SLC22A15 (ENSCAFG00845028198)	ENSCAFG00845028114	CASQ2 (ENSCAFG00845028062)	VANGL1 (ENSCAFG00845027910)	NGF (ENSCAFG00845027859)	ENSCAFG00845027829	TSPAN2 (ENSCAFG00845027766)	TSHB (ENSCAFG00845027709)	ENSCAFG00845027680	ENSCAFG00845027397	ENSCAFG00845027218	ENSCAFG00845027184	ENSCAFG00845027157	SIKE1 (ENSCAFG00845027120) ##22	CSDE1 (ENSCAFG00845026694)	NRAS (ENSCAFG00845026380)	AMPD1 (ENSCAFG00845025118)	DENND2C (ENSCAFG00845024386)	BCAS2 (ENSCAFG00845024283)	TRIM33 (ENSCAFG00845024048)	ENSCAFG00845023874	SYT6 (ENSCAFG00845023804)	OLFML3 (ENSCAFG00845023748)	HIPK1 (ENSCAFG00845023430)	DCLRE1B (ENSCAFG00845023268)	AP4B1 (ENSCAFG00845023163)	BCL2L15 (ENSCAFG00845023051)	PTPN22 (ENSCAFG00845022702)	ENSCAFG00845022567
Red fox	MODERN SPECIES	16	MAB21L3 (ENSVVUG00000010333)	ENSVVUG00000010324	ENSVVUG00000010311	ENSVVUG00000010302	NHLH2 (ENSVVUG00000010299)	CASQ2 (ENSVVUG00000010295)	VANGL1 (ENSVVUG00000010259)	TSPAN2 (ENSVVUG00000010237)	TSHB (ENSVVUG00000010234)	ENSVVUG00000010227	ENSVVUG00000010223	SYCP1 (ENSVVUG00000009950)	ENSVVUG00000009922	ENSVVUG00000009910	ENSVVUG00000009905	SIKE1 (ENSVVUG00000009899) ##22	CSDE1 (ENSVVUG00000009890)	NRAS (ENSVVUG00000009823)	AMPD1 (ENSVVUG00000009582)	ENSVVUG00000009548	DENND2C (ENSVVUG00000009535)	BCAS2 (ENSVVUG00000009511)	TRIM33 (ENSVVUG00000007748)	ENSVVUG00000007664	SYT6 (ENSVVUG00000007613)	OLFML3 (ENSVVUG00000007603)	HIPK1 (ENSVVUG00000007577)	DCLRE1B (ENSVVUG00000007565)	AP4B1 (ENSVVUG00000007559)	BCL2L15 (ENSVVUG00000007555)	PTPN22 (ENSVVUG00000007537)
Laurasiatheria_c	ANCESTRAL SPECIES		ENSGT00940000158367	ENSGT01030000234540.E	ENSGT00940000155177.b	ENSGT00510000049596	ENSGT00940000154840.b	ENSGT01050000244827.B	ENSGT00940000160364	ENSGT00940000162602	ENSGT00390000019377.b	ENSGT00390000012496.a	ENSGT00390000007725.A.b	ENSGT00940000157504	ENSGT00940000158152	ENSGT00390000003368	ENSGT00940000163318	ENSGT00390000018003.a ##22	ENSGT00390000016950	ENSGT00940000158947	ENSGT00950000183011.c.a.a	ENSGT00950000182931.B.a.b	ENSGT00390000014494.ob	ENSGT00940000156361.B	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b
Chiroptera	ANCESTRAL SPECIES	38	ENSGT00940000158367	ENSGT01030000234540.E	ENSGT00940000155177.b	ENSGT00510000049596	ENSGT00940000154840.b	ENSGT01050000244827.B	ENSGT00940000160364	ENSGT00940000162602	ENSGT00390000019377.b	ENSGT00390000012496.a	ENSGT00390000007725.A.b	ENSGT00940000157504	ENSGT00940000158152	ENSGT00390000003368	ENSGT00940000163318	ENSGT00390000018003.a ##22	ENSGT00390000016950	ENSGT00940000158947	ENSGT00950000183011.c.a.a	ENSGT00950000182931.B.a.b	ENSGT00390000014494.ob	ENSGT00940000156361.B	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b
Microchiroptera	ANCESTRAL SPECIES	35	ENSGT00940000158367	ENSGT01030000234540.E	ENSGT00940000155177.b	ENSGT00510000049596	ENSGT00940000154840.b	ENSGT01050000244827.B	ENSGT00940000160364	ENSGT00940000162602	ENSGT00390000019377.b	ENSGT00390000012496.a	ENSGT00390000007725.A.b	ENSGT00940000157504	ENSGT00940000158152	ENSGT00390000003368	ENSGT00940000163318	ENSGT00390000018003.a ##22	ENSGT00390000016950	ENSGT00940000158947	ENSGT00950000183011.c.a.a	ENSGT00950000182931.B.a.b	ENSGT00390000014494.ob	ENSGT00940000156361.B	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b
Greater horseshoe bat	MODERN SPECIES	14	PTGFRN (ENSRFEG00010018081)	CD2 (ENSRFEG00010018050)	IGSF3 (ENSRFEG00010017979)	ENSRFEG00010017926	ATP1A1 (ENSRFEG00010017578)	MAB21L3 (ENSRFEG00010017519)	SLC22A15 (ENSRFEG00010017434)	NHLH2 (ENSRFEG00010017414)	CASQ2 (ENSRFEG00010017384)	VANGL1 (ENSRFEG00010017347)	NGF (ENSRFEG00010017324)	TSPAN2 (ENSRFEG00010017235)	TSHB (ENSRFEG00010017176)	SYCP1 (ENSRFEG00010016297)	ENSRFEG00010016255	SIKE1 (ENSRFEG00010016146) ##22	CSDE1 (ENSRFEG00010016045)	NRAS (ENSRFEG00010015972)	AMPD1 (ENSRFEG00010015922)	DENND2C (ENSRFEG00010015796)	ENSRFEG00010015679	TRIM33 (ENSRFEG00010015569)	SYT6 (ENSRFEG00010015280)	OLFML3 (ENSRFEG00010015201)	HIPK1 (ENSRFEG00010014811)	DCLRE1B (ENSRFEG00010014716)	AP4B1 (ENSRFEG00010014570)	BCL2L15 (ENSRFEG00010014468)	PTPN22 (ENSRFEG00010014261)	RSBN1 (ENSRFEG00010014156)	PHTF1 (ENSRFEG00010013922)
Microbat	MODERN SPECIES	1038										ENSMLUG00000027389	ENSMLUG00000015968	NGF (ENSMLUG00000024754)	TSPAN2 (ENSMLUG00000007100)	TSHB (ENSMLUG00000007094)	SYCP1 (ENSMLUG00000005695)	SIKE1 (ENSMLUG00000005689) ##22	CSDE1 (ENSMLUG00000005681)	NRAS (ENSMLUG00000022354)	AMPD1 (ENSMLUG00000005668)	DENND2C (ENSMLUG00000005656)	ENSMLUG00000005653	TRIM33 (ENSMLUG00000013663)	SYT6 (ENSMLUG00000009931)	ENSMLUG00000022748	OLFML3 (ENSMLUG00000007520)	HIPK1 (ENSMLUG00000007488)	DCLRE1B (ENSMLUG00000007477)	ENSMLUG00000007458	BCL2L15 (ENSMLUG00000007445)	PTPN22 (ENSMLUG00000007430)	RSBN1 (ENSMLUG00000007416)
Megabat	MODERN SPECIES	3168																SIKE1 (ENSPVAG00000008227) ##22	CSDE1 (ENSPVAG00000008225)	NRAS (ENSPVAG00000008224)	AMPD1 (ENSPVAG00000008223)	DENND2C (ENSPVAG00000008221)	BCAS2 (ENSPVAG00000008220)	TRIM33 (ENSPVAG00000008217)	SYT6 (ENSPVAG00000008216)	OLFML3 (ENSPVAG00000008214)	HIPK1 (ENSPVAG00000008209)	DCLRE1B (ENSPVAG00000008205)	AP4B1 (ENSPVAG00000008202)	BCL2L15 (ENSPVAG00000008200)	PTPN22 (ENSPVAG00000008191)	RSBN1 (ENSPVAG00000008188)	PHTF1 (ENSPVAG00000008185)
Equus	ANCESTRAL SPECIES	3	ENSGT00940000158367	ENSGT01030000234540.E	ENSGT00940000155177.b	ENSGT00510000049596	ENSGT00940000154840.b	ENSGT01050000244827.B	ENSGT00940000160364	ENSGT00940000162602	ENSGT00390000019377.b	ENSGT00390000012496.a	ENSGT00390000007725.A.b	ENSGT00940000157504	ENSGT00940000158152	ENSGT00390000003368	ENSGT00940000163318	ENSGT00390000018003.a ##22	ENSGT00390000016950	ENSGT00940000158947	ENSGT00950000183011.c.a.a	ENSGT00950000182931.B.a.b	ENSGT00390000014494.nb.b	ENSGT00940000156361.B	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b
Horse	MODERN SPECIES	26	IGSF3 (ENSECAG00000022378)	CD2 (ENSECAG00000019437)	ENSECAG00000057106	ENSECAG00000056436	ATP1A1 (ENSECAG00000024623)	MAB21L3 (ENSECAG00000019090)	SLC22A15 (ENSECAG00000020117)	NHLH2 (ENSECAG00000030954)	CASQ2 (ENSECAG00000021854)	VANGL1 (ENSECAG00000008137)	NGF (ENSECAG00000010553)	TSPAN2 (ENSECAG00000010966)	TSHB (ENSECAG00000045218)	SYCP1 (ENSECAG00000013010)	ENSECAG00000015617	SIKE1 (ENSECAG00000019395) ##22	CSDE1 (ENSECAG00000020885)	NRAS (ENSECAG00000013942)	AMPD1 (ENSECAG00000014907)	DENND2C (ENSECAG00000019594)	ENSECAG00000037018	TRIM33 (ENSECAG00000021249)	SYT6 (ENSECAG00000010444)	OLFML3 (ENSECAG00000013439)	HIPK1 (ENSECAG00000015193)	DCLRE1B (ENSECAG00000021685)	AP4B1 (ENSECAG00000022112)	ENSECAG00000048631	PTPN22 (ENSECAG00000024298)	RSBN1 (ENSECAG00000008072)	PHTF1 (ENSECAG00000008416)
Donkey	MODERN SPECIES	7	PTGFRN (ENSEASG00005006364)	CD2 (ENSEASG00005006361)	IGSF3 (ENSEASG00005006358)	ENSEASG00005006357	ATP1A1 (ENSEASG00005006353)	MAB21L3 (ENSEASG00005006347)	SLC22A15 (ENSEASG00005006345)	NHLH2 (ENSEASG00005031693)	CASQ2 (ENSEASG00005006338)	VANGL1 (ENSEASG00005006335)	NGF (ENSEASG00005006332)	TSPAN2 (ENSEASG00005006328)	TSHB (ENSEASG00005006325)	SYCP1 (ENSEASG00005006304)	ENSEASG00005006296	SIKE1 (ENSEASG00005034759) ##22	CSDE1 (ENSEASG00005006284)	NRAS (ENSEASG00005006279)	AMPD1 (ENSEASG00005006275)	DENND2C (ENSEASG00005006273)	BCAS2 (ENSEASG00005006268)	ENSEASG00005006265	TRIM33 (ENSEASG00005005657)	SYT6 (ENSEASG00005005575)	OLFML3 (ENSEASG00005005573)	HIPK1 (ENSEASG00005005568)	DCLRE1B (ENSEASG00005029460)	AP4B1 (ENSEASG00005005561)	BCL2L15 (ENSEASG00005029753)	PTPN22 (ENSEASG00005005531)	RSBN1 (ENSEASG00005005523)
Eulipotyphla	ANCESTRAL SPECIES	794																ENSGT00390000018003.a ##22	ENSGT00390000016950	ENSGT00950000183011.c.a.a
Common shrew	MODERN SPECIES	1283																SIKE1 (ENSSARG00000007258) ##22
Hedgehog	MODERN SPECIES	346																SIKE1 (ENSEEUG00000006447) ##22	CSDE1 (ENSEEUG00000006286)
Atlantogenata	ANCESTRAL SPECIES	26	ENSGT00940000161722	ENSGT00940000158367	ENSGT01030000234540.E	ENSGT00940000155177.b	ENSGT00940000154840.b	ENSGT01050000244827.B	ENSGT00940000160364	ENSGT00940000162602	ENSGT00390000019377.b	ENSGT00390000012496.a	ENSGT00390000007725.A.b	ENSGT00940000157504	ENSGT00940000158152	ENSGT00390000003368	ENSGT00940000163318	ENSGT00390000018003.a ##22	ENSGT00390000016950	ENSGT00940000158947	ENSGT00950000183011.c.a.a	ENSGT00950000182931.B.a.b	ENSGT00390000014494	ENSGT00940000156361.B	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b
Xenarthra	ANCESTRAL SPECIES	110								ENSGT00940000162602	ENSGT00390000019377.b	ENSGT00390000012496.a	ENSGT00390000007725.A.b	ENSGT00940000157504	ENSGT00940000158152	ENSGT00390000003368	ENSGT00940000163318	ENSGT00390000018003.a ##22	ENSGT00390000016950.f	ENSGT00950000183011.c.a.a	ENSGT00950000182931.B.a.b	ENSGT00390000014494	ENSGT00940000156361.B	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b
Sloth	DUPLICATION
Sloth	MODERN SPECIES	3300																ENSCHOG00000012958 ##22
Sloth	MODERN SPECIES	12536																ENSCHOG00000011034 ##22
Armadillo	MODERN SPECIES	1989							NHLH2 (ENSDNOG00000008961)	CASQ2 (ENSDNOG00000033147)	VANGL1 (ENSDNOG00000011942)	NGF (ENSDNOG00000002008)	ENSDNOG00000044398	TSPAN2 (ENSDNOG00000045906)	TSHB (ENSDNOG00000003773)	SYCP1 (ENSDNOG00000011716)	ENSDNOG00000034800	SIKE1 (ENSDNOG00000011517) ##22	CSDE1 (ENSDNOG00000010287)	AMPD1 (ENSDNOG00000010259)	DENND2C (ENSDNOG00000045848)	BCAS2 (ENSDNOG00000018484)	TRIM33 (ENSDNOG00000007055)	SYT6 (ENSDNOG00000048919)	OLFML3 (ENSDNOG00000043382)	HIPK1 (ENSDNOG00000015792)	DCLRE1B (ENSDNOG00000038980)	AP4B1 (ENSDNOG00000016380)	BCL2L15 (ENSDNOG00000016378)	PTPN22 (ENSDNOG00000016374)	RSBN1 (ENSDNOG00000034600)	PHTF1 (ENSDNOG00000019757)	ENSDNOG00000043371
Afrotheria	ANCESTRAL SPECIES	31	ENSGT00940000162718	ENSGT00940000161722	ENSGT00940000158367	ENSGT01030000234540.E	ENSGT00940000155177.b	ENSGT00940000154840.b	ENSGT01050000244827.B	ENSGT00940000160364	ENSGT00940000162602	ENSGT00390000019377.b	ENSGT00390000012496.a	ENSGT00390000007725.A.b	ENSGT00940000157504	ENSGT00940000158152	ENSGT00940000163318	ENSGT00390000018003.a ##22	ENSGT00390000016950	ENSGT00940000158947	ENSGT00950000183011.c.a.a	ENSGT00950000182931.B.a.b	ENSGT00390000014494	ENSGT00940000156361.B	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b
Afrotheria_a	ANCESTRAL SPECIES	31	ENSGT00940000162718	ENSGT00940000161722	ENSGT00940000158367	ENSGT01030000234540.E	ENSGT00940000155177.b	ENSGT00940000154840.b	ENSGT01050000244827.B	ENSGT00940000160364	ENSGT00940000162602	ENSGT00390000019377.b	ENSGT00390000012496.a	ENSGT00390000007725.A.b	ENSGT00940000157504	ENSGT00940000158152	ENSGT00940000163318	ENSGT00390000018003.a ##22	ENSGT00390000016950	ENSGT00940000158947	ENSGT00950000183011.c.a.a	ENSGT00950000182931.B.a.b	ENSGT00390000014494	ENSGT00940000156361.B	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00390000018096	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b
Elephant	MODERN SPECIES	26	PTGFRN (ENSLAFG00000005517)	CD2 (ENSLAFG00000014389)	IGSF3 (ENSLAFG00000000958)	ATP1A1 (ENSLAFG00000015690)	MAB21L3 (ENSLAFG00000023352)	SLC22A15 (ENSLAFG00000004144)	NHLH2 (ENSLAFG00000007456)	CASQ2 (ENSLAFG00000003274)	VANGL1 (ENSLAFG00000003272)	ENSLAFG00000022285	NGF (ENSLAFG00000028282)	TSPAN2 (ENSLAFG00000006453)	TSHB (ENSLAFG00000030671)	ENSLAFG00000030508	ENSLAFG00000028744	SIKE1 (ENSLAFG00000010502) ##22	CSDE1 (ENSLAFG00000007150)	NRAS (ENSLAFG00000020706)	AMPD1 (ENSLAFG00000007144)	DENND2C (ENSLAFG00000003184)	BCAS2 (ENSLAFG00000003183)	TRIM33 (ENSLAFG00000001666)	ENSLAFG00000026214	SYT6 (ENSLAFG00000013416)	OLFML3 (ENSLAFG00000008070)	HIPK1 (ENSLAFG00000008067)	DCLRE1B (ENSLAFG00000008062)	AP4B1 (ENSLAFG00000008056)	BCL2L15 (ENSLAFG00000008055)	PTPN22 (ENSLAFG00000008050)	RSBN1 (ENSLAFG00000008049)
Hyrax	MODERN SPECIES	9710																SIKE1 (ENSPCAG00000001607) ##22
Tenrec	MODERN SPECIES	15797																SIKE1 (ENSETEG00000007805) ##22
Anura	ANCESTRAL SPECIES	68														ENSGT00390000003368	ENSGT00940000163318	ENSGT00390000018003.a ##22	ENSGT00390000016950	ENSGT00940000155653.a	ENSGT00950000183011.c.a.a	ENSGT00950000182931.B.a.b	ENSGT00390000014494	ENSGT00940000156361.B	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000158175	ENSGT00940000157025	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b	ENSGT00940000156496
Frog	MODERN SPECIES	2	kcna2 (ENSXETG00000044348)	kcna10 (ENSXETG00000017761)	ngf (ENSXETG00000016618)	ENSXETG00000035060	tspan2 (ENSXETG00000040906)	ENSXETG00000034828	stk38 (ENSXETG00000016625) ##28	XB5809687 [provisional] (ENSXETG00000032692)	cd53 (ENSXETG00000015353)	cry4 (ENSXETG00000015354)	ENSXETG00000041668	tshb (ENSXETG00000041131)	slc25a22l (ENSXETG00000015362)	sycp1 (ENSXETG00000048754)	nr1h5 (ENSXETG00000021443)	sike1 (ENSXETG00000021446) ##22	ENSXETG00000034849	csde1 (ENSXETG00000021448)	ENSXETG00000021449	ampd1 (ENSXETG00000021450)	dennd2c (ENSXETG00000021454)	trim33 (ENSXETG00000021457)	ENSXETG00000042333	syt6 (ENSXETG00000001696)	olfml3 (ENSXETG00000001697)	hipk1 (ENSXETG00000001698)	ENSXETG00000041605	rab44 (ENSXETG00000041440)	cdkn1a (ENSXETG00000024887)	srsf3 (ENSXETG00000001701)	ENSXETG00000041500
Leishan spiny toad	MODERN SPECIES	5	ENSLLEG00000001223	ENSLLEG00000001218	KCNA3 (ENSLLEG00000001209)	ENSLLEG00000001195	ENSLLEG00000001164	ENSLLEG00000001135	ENSLLEG00000001119	STK38 (ENSLLEG00000001040) ##28	ENSLLEG00000001019	ENSLLEG00000001002	ENSLLEG00000000988	ENSLLEG00000000922	ENSLLEG00000000885	ENSLLEG00000000874	ENSLLEG00000000857	SIKE1 (ENSLLEG00000000838) ##22	ENSLLEG00000000829	CSDE1 (ENSLLEG00000000433)	ENSLLEG00000000356	NRAS (ENSLLEG00000000330)	AMPD1 (ENSLLEG00000000308)	DENND2C (ENSLLEG00000000256)	BCAS2 (ENSLLEG00000000214)	TRIM33 (ENSLLEG00000000173)	ENSLLEG00000000151	ENSLLEG00000000148	ENSLLEG00000000140	SYT6 (ENSLLEG00000000117)	OLFML3 (ENSLLEG00000004244)	HIPK1 (ENSLLEG00000004227)	DCLRE1B (ENSLLEG00000004214)
Coelacanth	MODERN SPECIES	248										NGF (ENSLACG00000018594)	TSPAN2 (ENSLACG00000018561)	slc25a55b (ENSLACG00000018554)	slc5a8l (ENSLACG00000018539)	SYCP1 (ENSLACG00000022496)	ENSLACG00000018478	SIKE1 (ENSLACG00000018474) ##22	CSDE1 (ENSLACG00000018452)	ENSLACG00000018442 ##15	NRAS (ENSLACG00000018428)	AMPD1 (ENSLACG00000018419)	DENND2C (ENSLACG00000018383)	BCAS2 (ENSLACG00000018369)	TRIM33 (ENSLACG00000018328)	SYT6 (ENSLACG00000018159)	OLFML3 (ENSLACG00000018099)	TMEM183A (ENSLACG00000018086)	PPIL1 (ENSLACG00000018050)	ENSLACG00000017965	ENSLACG00000017845	KIF21B (ENSLACG00000017760)	CACNA1S (ENSLACG00000017615)
Actinopterygii	ANCESTRAL SPECIES	197					ENSGT00940000156024	ENSGT00950000183119.a	ENSGT00390000000873.a.a	ENSGT00950000182852.B	ENSGT00940000155343.a.b	ENSGT00940000159166	ENSGT00940000155343.a.a	ENSGT00940000158400	ENSGT00530000063849.B	ENSGT00940000165619	ENSGT00940000163318	ENSGT00390000018003.a ##22	ENSGT00390000016950	ENSGT00950000182839.B.a.b ##15	ENSGT00940000158947	ENSGT00950000183011.c.a.a	ENSGT00950000182931.B.a.b	ENSGT00390000014494	ENSGT00940000156361.B	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356
Reedfish	MODERN SPECIES	11	ENSECRG00000005711	rap1aa (ENSECRG00000005733)	ENSECRG00000005755	ipo9 (ENSECRG00000005788)	kdm5ba (ENSECRG00000005836)	ENSECRG00000005859	rabif (ENSECRG00000005871)	KLHL12 (ENSECRG00000005881)	adipor1b (ENSECRG00000005891)	ENSECRG00000005904 #32	CYB5R1 (ENSECRG00000005919)	timm17a (ENSECRG00000005940)	LMOD1 (ENSECRG00000005963)	shisa4 (ENSECRG00000005976)	ENSECRG00000006017	SIKE1 (ENSECRG00000006360) ##22	csde1 (ENSECRG00000006377)	ENSECRG00000006419 ##15	nras (ENSECRG00000006426)	ampd1 (ENSECRG00000006446)	ENSECRG00000006462	ENSECRG00000006470	ENSECRG00000006486	ENSECRG00000006490	ENSECRG00000006501	ENSECRG00000006506	ENSECRG00000006515	ENSECRG00000006530	SAMD9 (ENSECRG00000006570)	ENSECRG00000006575	ENSECRG00000006583
Neopterygii	ANCESTRAL SPECIES	256															ENSGT00940000163318	ENSGT00390000018003.a ##22	ENSGT00390000016950	ENSGT00950000182839.B.a.b ##15	ENSGT00940000158947	ENSGT00950000183011.c.a.a	ENSGT00950000182931.B.a.b	ENSGT00390000014494	ENSGT00940000156361.B	ENSGT00940000157665	ENSGT00940000158083	ENSGT00940000155356	ENSGT00940000155056	ENSGT00940000159584
Spotted gar	MODERN SPECIES	669	slc16a1a (ENSLOCG00000010261)	TAFA3 (ENSLOCG00000010264)	ENSLOCG00000010272	rhoca (ENSLOCG00000010281)	mov10b.2 (ENSLOCG00000010292)	capza1b (ENSLOCG00000010303)	st7l (ENSLOCG00000010322)	wnt2ba (ENSLOCG00000010337)	cttnbp2nlb (ENSLOCG00000010343)	kcnd3 (ENSLOCG00000010353)	ENSLOCG00000010369	ddx20 (ENSLOCG00000010372)	INKA2 (ENSLOCG00000018063)	rap1ab (ENSLOCG00000010384)	ENSLOCG00000010390	SIKE1 (ENSLOCG00000010407) ##22	CSDE1 (ENSLOCG00000010413)	ENSLOCG00000010433 ##15	nras (ENSLOCG00000010440)	ampd1 (ENSLOCG00000010444)	DENND2C (ENSLOCG00000010452)	bcas2 (ENSLOCG00000010471)	trim33 (ENSLOCG00000010479)	SYT6 (ENSLOCG00000010494)	olfml3a (ENSLOCG00000010503)	HIPK1 (ENSLOCG00000010511)	zgc:194242 (ENSLOCG00000010529)	zgc:194242 (ENSLOCG00000010534)	etv7 (ENSLOCG00000010545)	rplp2 (ENSLOCG00000010566)	ENSLOCG00000010576
Osteoglossocephalai	ANCESTRAL SPECIES	218		ENSGT00940000159957	ENSGT00390000010674.b	ENSGT00940000164106	ENSGT00950000183106.b	ENSGT00940000165103	ENSGT00940000157087.a.b	ENSGT00500000045021.d	ENSGT00390000005532.l	ENSGT00940000159714	ENSGT00390000013558.a.b	ENSGT00390000016392	ENSGT00940000160734.d	ENSGT00390000001400	ENSGT01010000222287.A	ENSGT00390000018003.a ##22	ENSGT00390000016950	ENSGT00950000182839.B.a.b ##15	ENSGT00940000158947	ENSGT00950000183011.c.a.a	ENSGT00950000182931.B.a.b	ENSGT00390000014494	ENSGT00940000156361.B	ENSGT00390000003344	ENSGT00940000166498
Osteoglossiformes	ANCESTRAL SPECIES	167	ENSGT00940000164106	ENSGT00950000183106.b	ENSGT00940000165103.d	ENSGT00940000157087.a.b.jb	ENSGT00500000045021.d	ENSGT00440000039706.n	ENSGT00390000005532.l	ENSGT00940000159714.a	ENSGT00390000013558.a.b	ENSGT00400000023987.c.a.a	ENSGT00390000010165.c	ENSGT00390000016392	ENSGT00940000160734.d	ENSGT00390000001400	ENSGT01010000222287.A	ENSGT00390000018003.a ##22	ENSGT00390000016950	ENSGT00950000182839.B.a.b ##15	ENSGT00940000158947	ENSGT00950000183011.c.a.a	ENSGT00950000182931.B.a.b	ENSGT00390000014494	ENSGT00940000156361.B	ENSGT00390000003344	ENSGT00940000166498	ENSGT00940000159584	ENSGT00940000155056
P. kingsleyae	MODERN SPECIES	263	atp13a2 (ENSPKIG00000010292)	TMEM240 (ENSPKIG00000010271)	ssu72 (ENSPKIG00000010240)	adipor1b (ENSPKIG00000010006)	KLHL12 (ENSPKIG00000009824)	tuba5 (ENSPKIG00000009773)	KDM5B (ENSPKIG00000009668)	neurod4 (ENSPKIG00000009635)	ENSPKIG00000009625	ZNF385A (ENSPKIG00000009611)	otud3 (ENSPKIG00000009590)	vwa1 (ENSPKIG00000009575)	TMCO4 (ENSPKIG00000009539)	ENSPKIG00000009517	ENSPKIG00000009507	SIKE1 (ENSPKIG00000009488) ##22	csde1 (ENSPKIG00000009459)	ENSPKIG00000009443 ##15	nras (ENSPKIG00000009416)	ampd1 (ENSPKIG00000009358)	DENND2C (ENSPKIG00000009318)	bcas2 (ENSPKIG00000009296)	trim33 (ENSPKIG00000009222)	slc66a1 (ENSPKIG00000009165)	nr1h5 (ENSPKIG00000009094)	ENSPKIG00000009004	BRPF3 (ENSPKIG00000008910)	zgc:153867 (ENSPKIG00000008811)	C1QL4 (ENSPKIG00000008767)	asb8 (ENSPKIG00000008744)	ENSPKIG00000008729
Asian bonytongue	MODERN SPECIES	17	FBXO42 (ENSSFOG00015032760)	szrd1 (ENSSFOG00015029546)	ENSSFOG00015028285	atp13a2 (ENSSFOG00015007222)	SDHB (ENSSFOG00015007267)	TMEM240 (ENSSFOG00015031152)	ENSSFOG00015030113	otud3 (ENSSFOG00015007303)	vwa1 (ENSSFOG00015007319)	ENSSFOG00015025425	HTR6 (ENSSFOG00015007355)	ENSSFOG00015012405	ENSSFOG00015007378	capzb (ENSSFOG00015007401)	taf13 (ENSSFOG00015007460)	SIKE1 (ENSSFOG00015024912) ##22	csde1 (ENSSFOG00015007498)	ENSSFOG00015007564 ##15	nras (ENSSFOG00015032247)	ampd1 (ENSSFOG00015007635)	DENND2C (ENSSFOG00015007663)	bcas2 (ENSSFOG00015028109)	trim33 (ENSSFOG00015007725)	slc66a1 (ENSSFOG00015007821)	nr1h5 (ENSSFOG00015007836)	MAPK13 (ENSSFOG00015007849)	BRPF3 (ENSSFOG00015007897)	KDM5B (ENSSFOG00015007981)	tuba5 (ENSSFOG00015008228)	KLHL12 (ENSSFOG00015008243)	adipor1b (ENSSFOG00015008277)
Clupeocephala	ANCESTRAL SPECIES	57				ENSGT00940000160682.a	ENSGT00940000159584	ENSGT00940000155056.a	ENSGT00940000166498	ENSGT00390000003344	ENSGT00940000156361.B	ENSGT00390000014494	ENSGT00950000182931.B.a.b	ENSGT00950000183011.c.a.a	ENSGT00940000158947	ENSGT00390000016950	ENSGT00950000182839.B.a.b ##15	ENSGT00390000018003.a ##22	ENSGT00940000168345	ENSGT01010000222287.A	ENSGT00390000001400	ENSGT00940000160734.d	ENSGT00390000016392	ENSGT00400000023987.d	ENSGT00730000111059.b	ENSGT00940000167742	ENSGT00390000013558.a.b	ENSGT00940000159714	ENSGT00390000005532.l	ENSGT00500000045021.d	ENSGT00940000157087.a.b	ENSGT00940000165103.a	ENSGT00950000183106.b
Euteleosteomorpha	ANCESTRAL SPECIES	61	ENSGT00940000158337	ENSGT00760000119531	ENSGT00930000151037	ENSGT00940000157064.a.a	ENSGT00940000160682.a	ENSGT00940000159584	ENSGT00940000155056.a	ENSGT00940000166498	ENSGT00390000003344	ENSGT00940000156361.B	ENSGT00390000014494	ENSGT00950000182931.B.a.b	ENSGT00950000183011.c.a.a	ENSGT00950000182839.B.a.b ##15	ENSGT00390000016950	ENSGT00390000018003.a ##22	ENSGT00940000168345	ENSGT01010000222287.A	ENSGT00390000001400	ENSGT00940000160734.d	ENSGT00390000016392	ENSGT00400000023987.d	ENSGT00730000111059.b	ENSGT00940000167742	ENSGT00390000013558.a.b	ENSGT00940000159714	ENSGT00390000005532.l	ENSGT00500000045021.d	ENSGT00940000157087.a.b	ENSGT00940000165103.a	ENSGT00950000183106.b
Acanthomorphata	ANCESTRAL SPECIES	104												ENSGT00950000182931.B.a.b	ENSGT00950000183011.c.a.a	ENSGT00950000182839.B.a.b ##15	ENSGT00390000016950	ENSGT00390000018003.a ##22	ENSGT00940000168345	ENSGT01010000222287.A	ENSGT00390000001400	ENSGT00940000160734.d	ENSGT00700000104550.a.j.b	ENSGT00940000159925	ENSGT00940000160093.b	ENSGT00940000159329	ENSGT00390000000732	ENSGT00390000009748	ENSGT00940000159381.c	ENSGT00390000006931	ENSGT00940000159472	ENSGT00390000000546	ENSGT00940000157014.e
Euacanthomorphacea	ANCESTRAL SPECIES	2	ENSGT00940000156361.B	ENSGT00390000003344	ENSGT00940000166498	ENSGT00940000155056.a	ENSGT00940000159584	ENSGT00940000160682.a	ENSGT00940000157064.a.a	ENSGT00930000151037	ENSGT00940000158337	ENSGT00940000153876.A	ENSGT00940000163259.b	ENSGT00950000182931.B.a.b	ENSGT00950000183011.c.a.a	ENSGT00950000182839.B.a.b ##15	ENSGT00390000016950	ENSGT00390000018003.a ##22	ENSGT00940000168345	ENSGT01010000222287.A	ENSGT00390000001400	ENSGT00940000160734.d	ENSGT00700000104550.a.j.b	ENSGT00940000159925	ENSGT00940000160093.b	ENSGT00940000159329	ENSGT00390000000732	ENSGT00390000009748	ENSGT00940000159381.c	ENSGT00390000006931	ENSGT01050000244866.D.b.b	ENSGT00940000159472	ENSGT00390000000546
Percomorphaceae	ANCESTRAL SPECIES	25	ENSGT00940000156361.B	ENSGT00390000003344	ENSGT00940000166498	ENSGT00940000155056.a	ENSGT00940000159584	ENSGT00940000160682.a	ENSGT00940000157064.a.a	ENSGT00930000151037	ENSGT00940000158337	ENSGT00940000153876.A	ENSGT00940000163259.b	ENSGT00950000182931.B.a.b	ENSGT00950000183011.c.a.a	ENSGT00950000182839.B.a.b ##15	ENSGT00390000016950	ENSGT00390000018003.a ##22	ENSGT00940000168345	ENSGT01010000222287.A	ENSGT00390000001400	ENSGT00940000160734.d	ENSGT00700000104550.a.j.b	ENSGT00940000159925	ENSGT00940000160093.b	ENSGT00940000159329	ENSGT00390000000732	ENSGT00390000009748	ENSGT00940000159381.c	ENSGT00390000006931	ENSGT01050000244866.D.b.b	ENSGT00940000159472	ENSGT00390000000546
Percomorphaceae_B	ANCESTRAL SPECIES	6	ENSGT00940000156361.B	ENSGT00390000003344	ENSGT00940000166498	ENSGT00940000155056.a	ENSGT00940000159584	ENSGT00940000160682.a	ENSGT00940000157064.a.a	ENSGT00930000151037	ENSGT00940000158337	ENSGT00940000153876.A	ENSGT00940000163259.b	ENSGT00950000182931.B.a.b	ENSGT00950000183011.c.a.a	ENSGT00950000182839.B.a.b ##15	ENSGT00390000016950	ENSGT00390000018003.a ##22	ENSGT00940000168345	ENSGT01010000222287.A	ENSGT00390000001400	ENSGT00940000160734.d	ENSGT00700000104550.a.j.b	ENSGT00940000159925	ENSGT00940000160093.b	ENSGT00940000159329	ENSGT00390000000732	ENSGT00390000009748	ENSGT00940000159381.c	ENSGT00390000006931	ENSGT01050000244866.D.b.b	ENSGT00940000159472	ENSGT00390000000546
Percomorphaceae_C	ANCESTRAL SPECIES	4	ENSGT00940000156361.B	ENSGT00390000003344	ENSGT00940000166498	ENSGT00940000155056.a	ENSGT00940000159584	ENSGT00940000160682.a	ENSGT00940000157064.a.a	ENSGT00930000151037	ENSGT00940000158337	ENSGT00940000153876.A	ENSGT00940000163259.b	ENSGT00950000182931.B.a.b	ENSGT00950000183011.c.a.a	ENSGT00950000182839.B.a.b ##15	ENSGT00390000016950	ENSGT00390000018003.a ##22	ENSGT00940000168345	ENSGT01010000222287.A	ENSGT00390000001400	ENSGT00940000160734.d	ENSGT00700000104550.a.j.b	ENSGT00940000159925	ENSGT00940000160093.b	ENSGT00940000159329	ENSGT00390000000732	ENSGT00390000009748	ENSGT00940000159381.c	ENSGT00390000006931	ENSGT01050000244866.D.b.b	ENSGT00940000159472	ENSGT00390000000546
Eupercaria	ANCESTRAL SPECIES	4	ENSGT00940000156361.B	ENSGT00390000003344	ENSGT00940000166498	ENSGT00940000155056.a	ENSGT00940000159584	ENSGT00940000160682.a	ENSGT00940000157064.a.a	ENSGT00930000151037	ENSGT00940000158337	ENSGT00940000153876.A	ENSGT00940000163259.b	ENSGT00950000182931.B.a.b	ENSGT00950000183011.c.a.a	ENSGT00950000182839.B.a.b ##15	ENSGT00390000016950	ENSGT00390000018003.a ##22	ENSGT00940000168345	ENSGT01010000222287.A	ENSGT00390000001400	ENSGT00940000160734.d	ENSGT00700000104550.a.j.b	ENSGT00940000159925	ENSGT00940000160093.b	ENSGT00940000159329	ENSGT00390000000732	ENSGT00390000009748	ENSGT00940000159381.c	ENSGT00390000006931	ENSGT01050000244866.D.b.b	ENSGT00940000159472	ENSGT00390000000546
Tetraodontidae	ANCESTRAL SPECIES	38	ENSGT00940000156361.B	ENSGT00390000003344	ENSGT00940000166498	ENSGT00940000155056.a	ENSGT00940000159584	ENSGT00940000160682.a	ENSGT00930000151037.j.b	ENSGT00940000157064.a.a	ENSGT00940000158337	ENSGT00940000153876.A	ENSGT00940000163259.b	ENSGT00950000182931.B.a.b	ENSGT00950000183011.c.a.a	ENSGT00950000182839.B.a.b ##15	ENSGT00390000016950	ENSGT00390000018003.a ##22	ENSGT00940000168345	ENSGT01010000222287.A	ENSGT00390000001400	ENSGT00940000160734.d	ENSGT00700000104550.a.j.b	ENSGT00940000159925	ENSGT00940000160093.b	ENSGT00940000159329	ENSGT00390000000732	ENSGT00390000009748	ENSGT00940000159381.c	ENSGT00390000006931	ENSGT01050000244866.D.b.b	ENSGT00940000159472	ENSGT00390000000546
Fugu	MODERN SPECIES	15	slc66a1 (ENSTRUG00000008043)	nr1h5 (ENSTRUG00000008191)	BRPF3 (ENSTRUG00000008374)	MAPK13 (ENSTRUG00000008627)	ENSTRUG00000026485	ENSTRUG00000023464	mtor (ENSTRUG00000009031)	angptl7 (ENSTRUG00000009793)	agrn (ENSTRUG00000006249)	ptpn11b (ENSTRUG00000006764)	RNF223 (ENSTRUG00000020331)	DENND2C (ENSTRUG00000007448)	ampd1 (ENSTRUG00000007552)	ENSTRUG00000031631 ##15	csde1 (ENSTRUG00000007996)	sike1 (ENSTRUG00000030693) ##22	ENSTRUG00000008412	HTR6 (ENSTRUG00000008418)	TMCO4 (ENSTRUG00000008582)	vwa1 (ENSTRUG00000008802)	RALGAPB (ENSTRUG00000008862)	PREX1 (ENSTRUG00000009041)	kcnq2a (ENSTRUG00000009776)	chrna4b (ENSTRUG00000010213)	zgpat (ENSTRUG00000010488)	TTI1 (ENSTRUG00000010598)	VSTM2L (ENSTRUG00000010761)	ctnnbl1 (ENSTRUG00000010777)	ENSTRUG00000011017	E2F1 (ENSTRUG00000021626)	znf341 (ENSTRUG00000011385)
Tetraodon	MODERN SPECIES	26	cdk11b (ENSTNIG00000010892)	szrd1 (ENSTNIG00000010891)	atp13a2 (ENSTNIG00000010890)	SDHB (ENSTNIG00000010889)	ENSTNIG00000010888	ENSTNIG00000010887	mtor (ENSTNIG00000010886)	ENSTNIG00000010885	agrn (ENSTNIG00000010884)	ptpn11b (ENSTNIG00000010883)	ENSTNIG00000010882	DENND2C (ENSTNIG00000010881)	ampd1 (ENSTNIG00000010880)	ENSTNIG00000010879 ##15	csde1 (ENSTNIG00000010878)	SIKE1 (ENSTNIG00000010877) ##22	ENSTNIG00000010876	ENSTNIG00000010875	TMCO4 (ENSTNIG00000010874)	vwa1 (ENSTNIG00000010873)	RALGAPB (ENSTNIG00000010872)	PREX1 (ENSTNIG00000010871)	kcnq2a (ENSTNIG00000010870)	chrna4b (ENSTNIG00000004166)	zgpat (ENSTNIG00000004165)	TTI1 (ENSTNIG00000004164)	VSTM2L (ENSTNIG00000004163)	ctnnbl1 (ENSTNIG00000004162)	ENSTNIG00000005049	E2F1 (ENSTNIG00000005050)	znf341 (ENSTNIG00000005051)
Eupecaria_A	ANCESTRAL SPECIES	4	ENSGT00940000156361.B	ENSGT00390000003344	ENSGT00940000166498	ENSGT00940000155056.a	ENSGT00940000159584	ENSGT00940000160682.a	ENSGT00940000157064.a.a	ENSGT00930000151037	ENSGT00940000158337	ENSGT00940000153876.A	ENSGT00940000163259.b	ENSGT00950000182931.B.a.b	ENSGT00950000183011.c.a.a	ENSGT00950000182839.B.a.b ##15	ENSGT00390000016950	ENSGT00390000018003.a ##22	ENSGT00940000168345	ENSGT01010000222287.A	ENSGT00390000001400	ENSGT00940000160734.d	ENSGT00700000104550.a.j.b	ENSGT00940000159925	ENSGT00940000160093.b	ENSGT00940000159329	ENSGT00390000000732	ENSGT00390000009748	ENSGT00940000159381.c	ENSGT00390000006931	ENSGT01050000244866.D.b.b	ENSGT00940000159472	ENSGT00390000000546
Ballan wrasse	MODERN SPECIES	83	trim33 (ENSLBEG00000013662)	slc66a1 (ENSLBEG00000013762)	nr1h5 (ENSLBEG00000013800)	BRPF3 (ENSLBEG00000013860)	ENSLBEG00000013938	ENSLBEG00000014017	mtor (ENSLBEG00000014115)	angptl7 (ENSLBEG00000014222)	agrn (ENSLBEG00000014305)	ptpn11b (ENSLBEG00000014479)	RNF223 (ENSLBEG00000014526)	DENND2C (ENSLBEG00000014549)	ampd1 (ENSLBEG00000014590)	ENSLBEG00000014652 ##15	csde1 (ENSLBEG00000014770)	SIKE1 (ENSLBEG00000014938) ##22	ENSLBEG00000014975	HTR6 (ENSLBEG00000015013)	TMCO4 (ENSLBEG00000015047)	vwa1 (ENSLBEG00000015080)	RALGAPB (ENSLBEG00000015168)	PREX1 (ENSLBEG00000015502)	kcnq2a (ENSLBEG00000015962)	chrna4b (ENSLBEG00000016241)	zgpat (ENSLBEG00000016259)	TTI1 (ENSLBEG00000016289)	ENSLBEG00000016377	ctnnbl1 (ENSLBEG00000016474)	ENSLBEG00000016593	ENSLBEG00000016633	znf341 (ENSLBEG00000016666)
Eupecaria_B	ANCESTRAL SPECIES	5	ENSGT00940000156361.B	ENSGT00390000003344	ENSGT00940000166498	ENSGT00940000155056.a	ENSGT00940000159584	ENSGT00940000160682.a	ENSGT00940000157064.a.a	ENSGT00930000151037	ENSGT00940000158337	ENSGT00940000153876.A	ENSGT00940000163259.b	ENSGT00950000182931.B.a.b	ENSGT00950000183011.c.a.a	ENSGT00950000182839.B.a.b ##15	ENSGT00390000016950	ENSGT00390000018003.a ##22	ENSGT00940000168345	ENSGT01010000222287.A	ENSGT00390000001400	ENSGT00940000160734.d	ENSGT00700000104550.a.j.b	ENSGT00940000159925	ENSGT00940000160093.b	ENSGT00940000159329	ENSGT00390000000732	ENSGT00390000009748	ENSGT00940000159381.c	ENSGT00390000006931	ENSGT01050000244866.D.b.b	ENSGT00940000159472	ENSGT00390000000546
Perciformes	ANCESTRAL SPECIES	4	ENSGT00940000156361.B	ENSGT00390000003344	ENSGT00940000166498	ENSGT00940000155056.a	ENSGT00940000159584	ENSGT00940000160682.a	ENSGT00940000157064.a.a	ENSGT00930000151037	ENSGT00940000158337	ENSGT00940000153876.A	ENSGT00940000163259.b	ENSGT00950000182931.B.a.b	ENSGT00950000183011.c.a.a	ENSGT00950000182839.B.a.b ##15	ENSGT00390000016950	ENSGT00390000018003.a ##22	ENSGT00940000168345	ENSGT01010000222287.A	ENSGT00390000001400	ENSGT00940000160734.d	ENSGT00700000104550.a.j.b	ENSGT00940000159925	ENSGT00940000160093.b	ENSGT00940000159329	ENSGT00390000000732	ENSGT00390000009748	ENSGT00940000159381.c	ENSGT00390000006931	ENSGT01050000244866.D.b.b	ENSGT00940000159472	ENSGT00390000000546
Cottioidei	ANCESTRAL SPECIES	2	ENSGT00950000183211.a.a.a	ENSGT00940000158950	ENSGT01090000260003.a.b.b.a.a.b.b.a.k	ENSGT00390000002407.c	ENSGT00950000183056.B.a.h	ENSGT00520000055567.a.a.a	ENSGT00940000153311.a.a.b	ENSGT00940000164997	ENSGT00520000055634.b.a	ENSGT01100000263518.A.a.a.a	ENSGT01080000257410.C	ENSGT00950000182931.B.a.b	ENSGT00950000183011.c.a.a	ENSGT00950000182839.B.a.b ##15	ENSGT00390000016950	ENSGT00390000018003.a ##22	ENSGT00940000168345	ENSGT00940000154484.A	ENSGT00390000001400	ENSGT00940000160734.d	ENSGT00700000104550.a.j.b	ENSGT00940000159925	ENSGT00940000160093.b	ENSGT00940000159329	ENSGT00390000000732	ENSGT00390000009748	ENSGT00940000159381.c	ENSGT00390000006931	ENSGT01050000244866.D.b.b	ENSGT00940000159472	ENSGT00390000000546
Lumpfish	MODERN SPECIES	22	ARFGEF2 (ENSCLMG00005012168)	bcl2l1 (ENSCLMG00005016560)	cox4i2 (ENSCLMG00005016561)	FAM110A (ENSCLMG00005016562)	nsfl1c (ENSCLMG00005016563)	fkbp1ab (ENSCLMG00005016564)	sdcbp2 (ENSCLMG00005016566)	SNPH (ENSCLMG00005016568)	NTSR1 (ENSCLMG00005016570)	SLCO4A1 (ENSCLMG00005016572)	ENSCLMG00005016593	DENND2C (ENSCLMG00005016597)	ampd1 (ENSCLMG00005016601)	ENSCLMG00005016694 ##15	csde1 (ENSCLMG00005016725)	SIKE1 (ENSCLMG00005019234) ##22	ENSCLMG00005019235	ENSCLMG00005019236	TMCO4 (ENSCLMG00005019251)	vwa1 (ENSCLMG00005019255)	RALGAPB (ENSCLMG00005019257)	PREX1 (ENSCLMG00005019263)	kcnq2a (ENSCLMG00005019317)	chrna4b (ENSCLMG00005019326)	zgpat (ENSCLMG00005019354)	TTI1 (ENSCLMG00005019357)	VSTM2L (ENSCLMG00005019366)	ctnnbl1 (ENSCLMG00005019378)	ENSCLMG00005020183	ENSCLMG00005020188	znf341 (ENSCLMG00005020191)
Stickleback	MODERN SPECIES	11	pard6b (ENSGACG00000004259)	ARFGEF2 (ENSGACG00000004260)	bcl2l1 (ENSGACG00000004283)	cox4i2 (ENSGACG00000004286)	ENSGACG00000004304	nsfl1c (ENSGACG00000004309)	fkbp1ab (ENSGACG00000004338)	sdcbp2 (ENSGACG00000004361)	SNPH (ENSGACG00000004424)	NTSR1 (ENSGACG00000004431)	SLCO4A1 (ENSGACG00000004451)	DENND2C (ENSGACG00000004454)	ampd1 (ENSGACG00000004467)	ENSGACG00000004542 ##15	csde1 (ENSGACG00000004544)	SIKE1 (ENSGACG00000004553) ##22	ENSGACG00000004575	ENSGACG00000004580	ENSGACG00000004585	vwa1 (ENSGACG00000004594)	RALGAPB (ENSGACG00000004605)	PREX1 (ENSGACG00000004620)	kcnq2a (ENSGACG00000004646)	chrna4b (ENSGACG00000004655)	zgpat (ENSGACG00000004662)	TTI1 (ENSGACG00000004667)	VSTM2L (ENSGACG00000004677)	ctnnbl1 (ENSGACG00000004681)	ENSGACG00000004708	ENSGACG00000004709	E2F1 (ENSGACG00000004732)
Perciformes_a	ANCESTRAL SPECIES	2	ENSGT00940000156361.B	ENSGT00390000003344	ENSGT00940000166498	ENSGT00940000155056.a	ENSGT00940000159584	ENSGT00940000160682.a	ENSGT00940000157064.a.a	ENSGT00930000151037	ENSGT00940000158337	ENSGT00940000153876.A	ENSGT00940000163259.b	ENSGT00950000182931.B.a.b	ENSGT00950000183011.c.a.a	ENSGT00950000182839.B.a.b ##15	ENSGT00390000016950	ENSGT00390000018003.a ##22	ENSGT00940000168345	ENSGT01010000222287.A	ENSGT00390000001400	ENSGT00940000160734.d	ENSGT00700000104550.a.j.b	ENSGT00940000159925	ENSGT00940000160093.b	ENSGT00940000159329	ENSGT00390000000732	ENSGT00390000009748	ENSGT00940000159381.c	ENSGT00390000006931	ENSGT01050000244866.D.b.b	ENSGT00940000159472	ENSGT00390000000546
Pike perch	MODERN SPECIES	7	trim33 (ENSSLUG00000025816)	slc66a1 (ENSSLUG00000025813)	nr1h5 (ENSSLUG00000025811)	BRPF3 (ENSSLUG00000025809)	MAPK13 (ENSSLUG00000025806)	ENSSLUG00000025800	angptl7 (ENSSLUG00000025795)	mtor (ENSSLUG00000025759)	agrn (ENSSLUG00000025665)	ptpn11b (ENSSLUG00000025566)	RNF223 (ENSSLUG00000025560)	DENND2C (ENSSLUG00000025554)	ampd1 (ENSSLUG00000025520)	ENSSLUG00000025478 ##15	csde1 (ENSSLUG00000025415)	SIKE1 (ENSSLUG00000025370) ##22	ENSSLUG00000025369	ENSSLUG00000025368	TMCO4 (ENSSLUG00000025352)	vwa1 (ENSSLUG00000025344)	RALGAPB (ENSSLUG00000025314)	PREX1 (ENSSLUG00000025148)	KCNQ2 (ENSSLUG00000025108)	chrna4b (ENSSLUG00000025095)	zgpat (ENSSLUG00000025089)	TTI1 (ENSSLUG00000025082)	ENSSLUG00000025081	ctnnbl1 (ENSSLUG00000025049)	ENSSLUG00000025033	E2F1 (ENSSLUG00000025028)	znf341 (ENSSLUG00000025014)
Channel bull blenny	MODERN SPECIES	21	trim33 (ENSCGOG00000009637)	slc66a1 (ENSCGOG00000010822)	nr1h5 (ENSCGOG00000010825)	BRPF3 (ENSCGOG00000010830)	MAPK13 (ENSCGOG00000010850)	ENSCGOG00000011077	mtor (ENSCGOG00000011183)	angptl7 (ENSCGOG00000014940)	agrn (ENSCGOG00000014988)	ptpn11b (ENSCGOG00000016909)	RNF223 (ENSCGOG00000017557)	DENND2C (ENSCGOG00000017560)	ampd1 (ENSCGOG00000017617)	ENSCGOG00000018979 ##15	csde1 (ENSCGOG00000019005)	SIKE1 (ENSCGOG00000020182) ##22	ENSCGOG00000020185	HTR6 (ENSCGOG00000020186)	TMCO4 (ENSCGOG00000020191)	vwa1 (ENSCGOG00000020237)	RALGAPB (ENSCGOG00000020326)	PREX1 (ENSCGOG00000021398)	kcnq2a (ENSCGOG00000022335)	chrna4b (ENSCGOG00000022504)	zgpat (ENSCGOG00000022585)	TTI1 (ENSCGOG00000022586)	ENSCGOG00000022588	ctnnbl1 (ENSCGOG00000022594)	ENSCGOG00000022713	ENSCGOG00000022714	znf341 (ENSCGOG00000022717)
Eupecaria_C	ANCESTRAL SPECIES	5	ENSGT00940000156361.B	ENSGT00390000003344	ENSGT00940000166498	ENSGT00940000155056.a	ENSGT00940000159584	ENSGT00940000160682.a	ENSGT00940000157064.a.a	ENSGT00930000151037	ENSGT00940000158337	ENSGT00940000153876.A	ENSGT00940000163259.b	ENSGT00950000182931.B.a.b	ENSGT00950000183011.c.a.a	ENSGT00950000182839.B.a.b ##15	ENSGT00390000016950	ENSGT00390000018003.a ##22	ENSGT00940000168345	ENSGT01010000222287.A	ENSGT00390000001400	ENSGT00940000160734.d	ENSGT00700000104550.a.j.b	ENSGT00940000159925	ENSGT00940000160093.b	ENSGT00940000159329	ENSGT00390000000732	ENSGT00390000009748	ENSGT00940000159381.c	ENSGT00390000006931	ENSGT01050000244866.D.b.b	ENSGT00940000159472	ENSGT00390000000546
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	20	ENSGT00940000156361.B	ENSGT00390000003344	ENSGT00940000166498	ENSGT00940000155056.a	ENSGT00940000159584	ENSGT00940000160682.a	ENSGT00940000157064.a.a	ENSGT00930000151037	ENSGT00940000158337	ENSGT00940000153876.A	ENSGT00940000163259.b	ENSGT00950000182931.B.a.b	ENSGT00950000183011.c.a.a	ENSGT00950000182839.B.a.b ##15	ENSGT00390000016950	ENSGT00390000018003.a ##22	ENSGT00940000168345	ENSGT01010000222287.A	ENSGT00390000001400	ENSGT00940000160734.d	ENSGT00700000104550.a.j.b	ENSGT00940000159925	ENSGT00940000160093.b	ENSGT00940000159329	ENSGT00390000000732	ENSGT00390000009748	ENSGT00940000159381.c	ENSGT00390000006931	ENSGT01050000244866.D.b.b	ENSGT00940000159472	ENSGT00390000000546
European seabass	MODERN SPECIES	14	trim33 (ENSDLAG00005016596)	slc66a1 (ENSDLAG00005016846)	nr1h5 (ENSDLAG00005016862)	ENSDLAG00005016886	ENSDLAG00005016904	ENSDLAG00005017053	ENSDLAG00005034287	ENSDLAG00005019287	ENSDLAG00005019363	ENSDLAG00005022089	ENSDLAG00005034563	DENND2C (ENSDLAG00005032504)	ENSDLAG00005022825	ENSDLAG00005023188 ##15	CSDE1 (ENSDLAG00005023227)	ENSDLAG00005031029 ##22	ENSDLAG00005023929	ENSDLAG00005033304	ENSDLAG00005023937	vwa1 (ENSDLAG00005023969)	ENSDLAG00005024005	ENSDLAG00005024474	ENSDLAG00005024925	ENSDLAG00005025168	ENSDLAG00005025206	TTI1 (ENSDLAG00005025217)	ENSDLAG00005028354	CTNNBL1 (ENSDLAG00005025251)	ENSDLAG00005001254	ENSDLAG00005032604	znf341 (ENSDLAG00005001348)
Large yellow croaker	MODERN SPECIES	487	trim33 (ENSLCRG00005006953)	slc66a1 (ENSLCRG00005006958)	nr1h5 (ENSLCRG00005006959)	BRPF3 (ENSLCRG00005006963)	MAPK13 (ENSLCRG00005006968)	ENSLCRG00005006978	mtor (ENSLCRG00005006997)	angptl7 (ENSLCRG00005007070)	agrn (ENSLCRG00005007112)	ENSLCRG00005010078	RNF223 (ENSLCRG00005011444)	DENND2C (ENSLCRG00005011454)	ampd1 (ENSLCRG00005011483)	ENSLCRG00005012205 ##15	csde1 (ENSLCRG00005012246)	SIKE1 (ENSLCRG00005014547) ##22	ENSLCRG00005014549	HTR6 (ENSLCRG00005014550)	TMCO4 (ENSLCRG00005014551)	vwa1 (ENSLCRG00005014560)	RALGAPB (ENSLCRG00005014563)	PREX1 (ENSLCRG00005014739)	kcnq2a (ENSLCRG00005014845)	chrna4b (ENSLCRG00005015422)	zgpat (ENSLCRG00005015426)	TTI1 (ENSLCRG00005015427)	ENSLCRG00005015429	ctnnbl1 (ENSLCRG00005015445)	ENSLCRG00005016090	E2F1 (ENSLCRG00005016091)	znf341 (ENSLCRG00005016093)
Gilthead seabream	MODERN SPECIES	21	slc66a1 (ENSSAUG00010014109)	nr1h5 (ENSSAUG00010014116)	BRPF3 (ENSSAUG00010014119)	ENSSAUG00010014128	ENSSAUG00010014134	ENSSAUG00010014137	mtor (ENSSAUG00010014229)	angptl7 (ENSSAUG00010017945)	agrn (ENSSAUG00010018051)	ptpn11b (ENSSAUG00010021325)	RNF223 (ENSSAUG00010022415)	DENND2C (ENSSAUG00010022420)	ampd1 (ENSSAUG00010022440)	ENSSAUG00010023348 ##15	csde1 (ENSSAUG00010023384)	SIKE1 (ENSSAUG00010023472) ##22	ENSSAUG00010023475	HTR6 (ENSSAUG00010023478)	TMCO4 (ENSSAUG00010023479)	vwa1 (ENSSAUG00010023514)	RALGAPB (ENSSAUG00010023528)	PREX1 (ENSSAUG00010023706)	kcnq2a (ENSSAUG00010024701)	chrna4b (ENSSAUG00010025269)	zgpat (ENSSAUG00010025272)	TTI1 (ENSSAUG00010025275)	ENSSAUG00010025279	ctnnbl1 (ENSSAUG00010025290)	ENSSAUG00010025604	E2F1 (ENSSAUG00010025606)	znf341 (ENSSAUG00010025608)
Percomorphaceae_D	ANCESTRAL SPECIES	4	ENSGT00940000156361.B	ENSGT00390000003344	ENSGT00940000166498	ENSGT00940000155056.a	ENSGT00940000159584	ENSGT00940000160682.a	ENSGT00930000151037	ENSGT00940000157064.a.a	ENSGT00940000158337	ENSGT00940000153876.A	ENSGT00940000163259.b	ENSGT00950000182931.B.a.b	ENSGT00950000183011.c.a.a	ENSGT00950000182839.B.a.b ##15	ENSGT00390000016950	ENSGT00390000018003.a ##22	ENSGT00940000168345	ENSGT01010000222287.A	ENSGT00390000001400	ENSGT00940000160734.d	ENSGT00700000104550.a.j.b	ENSGT00940000159925	ENSGT00940000160093.b	ENSGT00940000159329	ENSGT00390000000732	ENSGT00390000009748	ENSGT00940000159381.c	ENSGT00390000006931	ENSGT01050000244866.D.b.b	ENSGT00940000159472	ENSGT00390000000546
Anabantaria	ANCESTRAL SPECIES	3	ENSGT00940000156361.B	ENSGT00390000003344	ENSGT00940000166498	ENSGT00940000155056.a	ENSGT00940000159584	ENSGT00940000160682.a	ENSGT00940000157064.a.a	ENSGT00930000151037	ENSGT00940000158337	ENSGT00940000153876.A	ENSGT00940000163259.b	ENSGT00950000182931.B.a.b	ENSGT00950000183011.c.a.a	ENSGT00950000182839.B.a.b ##15	ENSGT00390000016950	ENSGT00390000018003.a ##22	ENSGT00940000168345	ENSGT00940000164988	ENSGT00940000154484.A	ENSGT00390000001400	ENSGT00940000160734.d	ENSGT00700000104550.a.j.b	ENSGT00940000159925	ENSGT00940000160093.b	ENSGT00940000159329	ENSGT00390000000732	ENSGT00390000009748	ENSGT00940000159381.c	ENSGT00390000006931	ENSGT01050000244866.D.b.b	ENSGT00940000159472
Anabantoidei	ANCESTRAL SPECIES	2	ENSGT00940000156361.B	ENSGT00390000003344	ENSGT00940000166498	ENSGT00940000155056.a	ENSGT00940000159584	ENSGT00940000160682.a	ENSGT00940000157064.a.a	ENSGT00930000151037	ENSGT00940000158337	ENSGT00940000153876.A	ENSGT00940000163259.b	ENSGT00950000182931.B.a.b	ENSGT00950000183011.c.a.a	ENSGT00950000182839.B.a.b ##15	ENSGT00390000016950	ENSGT00390000018003.a ##22	ENSGT00940000168345	ENSGT00940000154484.A	ENSGT00390000001400	ENSGT00940000160734.d	ENSGT00700000104550.a.j.b	ENSGT00940000159925	ENSGT00940000160093.b	ENSGT00940000159329	ENSGT00390000000732	ENSGT00390000009748	ENSGT00940000159381.c	ENSGT00390000006931	ENSGT01050000244866.D.b.b	ENSGT00940000159472	ENSGT00390000000546
Climbing perch	MODERN SPECIES	20	trim33 (ENSATEG00000004717)	slc66a1 (ENSATEG00000004697)	nr1h5 (ENSATEG00000004649)	ENSATEG00000004586	ENSATEG00000004520	ENSATEG00000004494	ENSATEG00000004456	ENSATEG00000004175	ENSATEG00000004139	ENSATEG00000004060	ENSATEG00000004040	DENND2C (ENSATEG00000004030)	ENSATEG00000003961	ENSATEG00000029204 ##15	CSDE1 (ENSATEG00000003864)	ENSATEG00000003841 ##22	ENSATEG00000003796	ENSATEG00000026807	ENSATEG00000003731	vwa1 (ENSATEG00000003719)	ENSATEG00000003680	ENSATEG00000003472	ENSATEG00000003394	ENSATEG00000003383	ENSATEG00000003363	ENSATEG00000003346	TTI1 (ENSATEG00000003339)	ENSATEG00000027996	CTNNBL1 (ENSATEG00000003253)	ENSATEG00000003225	ENSATEG00000026074
Siamese fighting fish	MODERN SPECIES	18	slc66a1 (ENSBSLG00000009440)	nr1h5 (ENSBSLG00000009457)	BRPF3 (ENSBSLG00000009470)	MAPK13 (ENSBSLG00000009510)	ENSBSLG00000010242	mtor (ENSBSLG00000010259)	angptl7 (ENSBSLG00000010382)	agrn (ENSBSLG00000010997)	ENSBSLG00000013935	ptpn11b (ENSBSLG00000014153)	RNF223 (ENSBSLG00000014746)	DENND2C (ENSBSLG00000014757)	ampd1 (ENSBSLG00000014875)	ENSBSLG00000016455 ##15	csde1 (ENSBSLG00000016489)	SIKE1 (ENSBSLG00000019070) ##22	ENSBSLG00000019084	ENSBSLG00000019100	TMCO4 (ENSBSLG00000019142)	vwa1 (ENSBSLG00000019304)	RALGAPB (ENSBSLG00000019309)	PREX1 (ENSBSLG00000019588)	kcnq2a (ENSBSLG00000020721)	chrna4b (ENSBSLG00000021098)	zgpat (ENSBSLG00000021208)	TTI1 (ENSBSLG00000021259)	ENSBSLG00000021278	ctnnbl1 (ENSBSLG00000021326)	E2F1 (ENSBSLG00000021619)	znf341 (ENSBSLG00000021630)	itchb (ENSBSLG00000021781)
Zig-zag eel	MODERN SPECIES	21	trim33 (ENSMAMG00000013717)	slc66a1 (ENSMAMG00000013644)	nr1h5 (ENSMAMG00000013617)	ENSMAMG00000013600	ENSMAMG00000013549	ENSMAMG00000026120	ENSMAMG00000013521	ENSMAMG00000013377	ENSMAMG00000013283	ENSMAMG00000013236	ENSMAMG00000013221	DENND2C (ENSMAMG00000013134)	ENSMAMG00000008994	ENSMAMG00000028707 ##15	CSDE1 (ENSMAMG00000008821)	ENSMAMG00000008805 ##22	ENSMAMG00000026350	ENSMAMG00000008762	ENSMAMG00000008710	ENSMAMG00000008686	ENSMAMG00000008647	ENSMAMG00000008393	ENSMAMG00000008331	ENSMAMG00000008298	ENSMAMG00000008266	TTI1 (ENSMAMG00000008219)	ENSMAMG00000008178	CTNNBL1 (ENSMAMG00000008115)	ENSMAMG00000008074	ENSMAMG00000008052	znf341 (ENSMAMG00000008000)
Carangaria	ANCESTRAL SPECIES	2	ENSGT00940000156361.B	ENSGT00390000003344	ENSGT00940000166498	ENSGT00940000155056.a	ENSGT00940000159584	ENSGT00940000160682.a	ENSGT00930000151037	ENSGT00940000157064.a.a	ENSGT00940000158337	ENSGT00940000153876.A	ENSGT00940000163259.b	ENSGT00950000182931.B.a.b	ENSGT00950000183011.c.a.a	ENSGT00950000182839.B.a.b ##15	ENSGT00390000016950	ENSGT00390000018003.a ##22	ENSGT00940000168345	ENSGT01010000222287.A	ENSGT00390000001400	ENSGT00940000160734.d	ENSGT00700000104550.a.j.b	ENSGT00940000159925	ENSGT00940000160093.b	ENSGT00940000159329	ENSGT00390000000732	ENSGT00390000009748	ENSGT00940000159381.c	ENSGT00390000006931	ENSGT01050000244866.D.b.b	ENSGT00940000159472	ENSGT00390000000546
Carangaria_A	ANCESTRAL SPECIES	1	ENSGT00940000156361.B	ENSGT00390000003344	ENSGT00940000166498	ENSGT00940000155056.a	ENSGT00940000159584	ENSGT00940000160682.a	ENSGT00930000151037	ENSGT00940000157064.a.a	ENSGT00940000158337	ENSGT00940000153876.A	ENSGT00940000163259.b	ENSGT00950000182931.B.a.b	ENSGT00950000183011.c.a.a	ENSGT00950000182839.B.a.b ##15	ENSGT00390000016950	ENSGT00390000018003.a ##22	ENSGT00940000168345	ENSGT01010000222287.A	ENSGT00390000001400	ENSGT00940000160734.d	ENSGT00700000104550.a.j.b	ENSGT00940000159925	ENSGT00940000160093.b	ENSGT00940000159329	ENSGT00390000000732	ENSGT00390000009748	ENSGT00940000159381.c	ENSGT00390000006931	ENSGT01050000244866.D.b.b	ENSGT00940000159472	ENSGT00390000000546
Barramundi perch	MODERN SPECIES	62	slc66a1 (ENSLCAG00010002014)	nr1h5 (ENSLCAG00010002039)	BRPF3 (ENSLCAG00010002050)	MAPK13 (ENSLCAG00010002062)	ENSLCAG00010002068	mtor (ENSLCAG00010002119)	angptl7 (ENSLCAG00010002213)	agrn (ENSLCAG00010002519)	ENSLCAG00010003921	RNF223 (ENSLCAG00010004007)	ENSLCAG00010004010	ENSLCAG00010004013	ampd1 (ENSLCAG00010004138)	ENSLCAG00010004648 ##15	csde1 (ENSLCAG00010004839)	SIKE1 (ENSLCAG00010005854) ##22	ENSLCAG00010005858	HTR6 (ENSLCAG00010005863)	TMCO4 (ENSLCAG00010005868)	vwa1 (ENSLCAG00010005881)	RALGAPB (ENSLCAG00010005919)	PREX1 (ENSLCAG00010006060)	kcnq2a (ENSLCAG00010006318)	chrna4b (ENSLCAG00010006389)	zgpat (ENSLCAG00010006396)	ENSLCAG00010006401	TTI1 (ENSLCAG00010006406)	ENSLCAG00010006411	ctnnbl1 (ENSLCAG00010006430)	ENSLCAG00010006494	ENSLCAG00010006507
Seriola	ANCESTRAL SPECIES	120												ENSGT00950000182931.B.a.b	ENSGT00950000183011.c.a.a	ENSGT00950000182839.B.a.b ##15	ENSGT00390000016950	ENSGT00390000018003.a ##22	ENSGT00940000168345	ENSGT01010000222287.A	ENSGT00390000001400	ENSGT00940000160734.d	ENSGT00700000104550.a.j.b	ENSGT00940000159925	ENSGT00940000160093.b	ENSGT00940000159329	ENSGT00390000000732	ENSGT00390000009748	ENSGT00940000159381.c	ENSGT00390000006931	ENSGT01050000244866.D.b.b	ENSGT00940000159472	ENSGT00390000000546
Yellowtail amberjack	MODERN SPECIES	2398												DENND2C (ENSSLDG00000009084)	ampd1 (ENSSLDG00000009009)	ENSSLDG00000008971 ##15	csde1 (ENSSLDG00000008819)	SIKE1 (ENSSLDG00000008751) ##22	ENSSLDG00000008737	HTR6 (ENSSLDG00000008719)	TMCO4 (ENSSLDG00000008691)	vwa1 (ENSSLDG00000008667)	RALGAPB (ENSSLDG00000008622)	PREX1 (ENSSLDG00000008451)
Greater amberjack	MODERN SPECIES	96												DENND2C (ENSSDUG00000015661)	ampd1 (ENSSDUG00000015597)	ENSSDUG00000015578 ##15	csde1 (ENSSDUG00000015380)	SIKE1 (ENSSDUG00000015326) ##22	ENSSDUG00000015298	HTR6 (ENSSDUG00000015285)	TMCO4 (ENSSDUG00000015259)	vwa1 (ENSSDUG00000015233)	RALGAPB (ENSSDUG00000015149)	PREX1 (ENSSDUG00000015028)	kcnq2a (ENSSDUG00000014794)	chrna4b (ENSSDUG00000014704)	zgpat (ENSSDUG00000014684)	TTI1 (ENSSDUG00000014660)	VSTM2L (ENSSDUG00000014651)	ctnnbl1 (ENSSDUG00000014630)	ENSSDUG00000014595	E2F1 (ENSSDUG00000014566)	znf341 (ENSSDUG00000014540)
Pleuronectoidei	ANCESTRAL SPECIES	14	ENSGT00940000156361.B	ENSGT00390000003344	ENSGT00940000166498	ENSGT00940000155056.a	ENSGT00940000159584	ENSGT00940000160682.a	ENSGT00930000151037	ENSGT00940000157064.a.a	ENSGT00940000158337	ENSGT00940000153876.A	ENSGT00940000163259.b	ENSGT00950000182931.B.a.b	ENSGT00950000183011.c.a.a	ENSGT00950000182839.B.a.b ##15	ENSGT00390000016950	ENSGT00390000018003.a ##22	ENSGT00940000168345	ENSGT01010000222287.A	ENSGT00390000001400	ENSGT00940000160734.d	ENSGT00700000104550.a.j.b	ENSGT00940000159925	ENSGT00940000160093.b	ENSGT00940000159329	ENSGT00390000000732	ENSGT00390000009748	ENSGT00940000159381.c	ENSGT00390000006931	ENSGT01050000244866.D.b.b	ENSGT00940000159472	ENSGT00390000000546
Turbot	MODERN SPECIES	2	ENSSMAG00000007890	ENSSMAG00000007774	ENSSMAG00000037374	ENSSMAG00000007696	ENSSMAG00000007646	nr1h5 (ENSSMAG00000007598)	slc66a1 (ENSSMAG00000007573)	trim33 (ENSSMAG00000007543)	ENSSMAG00000036720	ENSSMAG00000007504	ENSSMAG00000007493	ENSSMAG00000007477	atp13a2 (ENSSMAG00000007454)	szrd1 (ENSSMAG00000007430)	ENSSMAG00000007203	ENSSMAG00000007182 ##22	ENSSMAG00000033188	ENSSMAG00000007162	ENSSMAG00000007146	vwa1 (ENSSMAG00000007138)	ENSSMAG00000006970	ENSSMAG00000006763	ENSSMAG00000006690	ENSSMAG00000006668	ENSSMAG00000006646	TTI1 (ENSSMAG00000006607)	ENSSMAG00000006588	CTNNBL1 (ENSSMAG00000006545)	ENSSMAG00000006502	ENSSMAG00000006487	znf341 (ENSSMAG00000006473)
Tongue sole	MODERN SPECIES	1	ENSCSEG00000002882	ENSCSEG00000002872	ENSCSEG00000002830	ENSCSEG00000002819	USP19 (ENSCSEG00000002778)	tlr9 (ENSCSEG00000002760)	ENSCSEG00000002715	ENSCSEG00000002701	ENSCSEG00000002695	ERC2 (ENSCSEG00000002685)	wnt5a (ENSCSEG00000002679)	DENND2C (ENSCSEG00000002671)	ampd1 (ENSCSEG00000002666)	ENSCSEG00000002663 ##15	csde1 (ENSCSEG00000002620)	ENSCSEG00000002607 ##22	ENSCSEG00000002600	HTR6 (ENSCSEG00000002597)	TMCO4 (ENSCSEG00000002586)	vwa1 (ENSCSEG00000002431)	RALGAPB (ENSCSEG00000002363)	PREX1 (ENSCSEG00000002335)	kcnq2a (ENSCSEG00000002322)	chrna4b (ENSCSEG00000002311)	zgpat (ENSCSEG00000002301)	TTI1 (ENSCSEG00000002293)	ENSCSEG00000002288	ENSCSEG00000002282	ENSCSEG00000002275	sars1 (ENSCSEG00000002268)	zgc:77056 (ENSCSEG00000002264)
Ovalentaria	ANCESTRAL SPECIES	6	ENSGT00940000156361.B	ENSGT00390000003344	ENSGT00940000166498	ENSGT00940000155056.a	ENSGT00940000159584	ENSGT00940000160682.a	ENSGT00930000151037	ENSGT00940000157064.a.a	ENSGT00940000158337	ENSGT00940000153876.A	ENSGT00940000163259.b	ENSGT00950000182931.B.a.b	ENSGT00950000183011.c.a.a	ENSGT00950000182839.B.a.b ##15	ENSGT00390000016950	ENSGT00390000018003.a ##22	ENSGT00940000168345	ENSGT01010000222287.A	ENSGT00390000001400	ENSGT00940000160734.d	ENSGT00700000104550.a.j.b	ENSGT00940000159925	ENSGT00940000160093.b	ENSGT00940000159329	ENSGT00390000000732	ENSGT00390000009748	ENSGT00940000159381.c	ENSGT00390000006931	ENSGT01050000244866.D.b.b	ENSGT00940000159472	ENSGT00390000000546
Atherinomorphae	ANCESTRAL SPECIES	3	ENSGT00940000156361.B	ENSGT00390000003344	ENSGT00940000166498	ENSGT00940000155056.a	ENSGT00940000159584	ENSGT00940000160682.a	ENSGT00930000151037	ENSGT00940000157064.a.a	ENSGT00940000158337	ENSGT00940000153876.A	ENSGT00940000163259.b	ENSGT00950000182931.B.a.b	ENSGT00950000183011.c.a.a	ENSGT00950000182839.B.a.b ##15	ENSGT00390000016950	ENSGT00390000018003.a ##22	ENSGT00940000168345	ENSGT01010000222287.A	ENSGT00390000001400	ENSGT00940000160734.d	ENSGT00700000104550.a.j.b	ENSGT00940000159925	ENSGT00940000160093.b	ENSGT00940000159329	ENSGT00390000000732	ENSGT00390000009748	ENSGT00940000159381.c	ENSGT00390000006931	ENSGT01050000244866.D.b.b	ENSGT00940000159472	ENSGT00390000000546
Cyprinodontiformes	ANCESTRAL SPECIES	4	ENSGT00940000156361.B	ENSGT00390000003344	ENSGT00940000166498	ENSGT00940000155056.a	ENSGT00940000159584	ENSGT00940000160682.a	ENSGT00930000151037	ENSGT00940000157064.a.a	ENSGT00940000158337	ENSGT00940000153876.A	ENSGT00940000163259.b	ENSGT00950000182931.B.a.b	ENSGT00950000183011.c.a.a	ENSGT00950000182839.B.a.b ##15	ENSGT00390000016950	ENSGT00390000018003.a ##22	ENSGT00940000168345	ENSGT01010000222287.A	ENSGT00390000001400	ENSGT00940000160734.d	ENSGT00700000104550.a.j.b	ENSGT00940000159925	ENSGT00940000160093.b	ENSGT00940000159329	ENSGT00390000000732	ENSGT00390000009748	ENSGT00940000159381.c	ENSGT00390000006931	ENSGT01050000244866.D.b.b	ENSGT00940000159472	ENSGT00390000000546
Aplocheiloidei	ANCESTRAL SPECIES		ENSGT00940000156361.B	ENSGT00390000003344	ENSGT00940000166498	ENSGT00940000155056.a	ENSGT00940000159584	ENSGT00940000160682.a	ENSGT00940000157064.a.a	ENSGT00930000151037	ENSGT00940000158337	ENSGT00940000153876.A	ENSGT00940000163259.b	ENSGT00950000182931.B.a.b	ENSGT00950000183011.c.a.a	ENSGT00950000182839.B.a.b ##15	ENSGT00390000016950	ENSGT00390000018003.a ##22	ENSGT00940000168345	ENSGT01010000222287.A	ENSGT00390000001400	ENSGT00940000160734.d	ENSGT00700000104550.a.j.b	ENSGT00940000159925	ENSGT00940000160093.b	ENSGT00940000159329	ENSGT00390000000732	ENSGT00390000009748	ENSGT00940000159381.c	ENSGT00390000006931	ENSGT01050000244866.D.b.b	ENSGT00940000159472	ENSGT00390000000546
Mangrove rivulus	MODERN SPECIES	18	trim33 (ENSKMAG00000004948)	slc66a1 (ENSKMAG00000005001)	nr1h5 (ENSKMAG00000005012)	BRPF3 (ENSKMAG00000005040)	ENSKMAG00000005118	ENSKMAG00000005166	mtor (ENSKMAG00000005214)	angptl7 (ENSKMAG00000005393)	agrn (ENSKMAG00000005430)	ptpn11b (ENSKMAG00000005510)	RNF223 (ENSKMAG00000005538)	DENND2C (ENSKMAG00000005555)	ampd1 (ENSKMAG00000005597)	ENSKMAG00000005635 ##15	csde1 (ENSKMAG00000005685)	SIKE1 (ENSKMAG00000005832) ##22	ENSKMAG00000005847	HTR6 (ENSKMAG00000005867)	TMCO4 (ENSKMAG00000005895)	vwa1 (ENSKMAG00000005979)	RALGAPB (ENSKMAG00000006031)	PREX1 (ENSKMAG00000006248)	kcnq2a (ENSKMAG00000006391)	chrna4b (ENSKMAG00000006487)	zgpat (ENSKMAG00000006523)	TTI1 (ENSKMAG00000006550)	ENSKMAG00000006606	ctnnbl1 (ENSKMAG00000006624)	E2F1 (ENSKMAG00000006661)	znf341 (ENSKMAG00000006686)	itchb (ENSKMAG00000006758)
Turquoise killifish	MODERN SPECIES	1624	ptpn1 (ENSNFUG00015015787)	CEBPB (ENSNFUG00015015773)	TMEM189 (ENSNFUG00015015737)	SCRT2 (ENSNFUG00015015725)	ythdf1 (ENSNFUG00015015704)	PQLC2 (ENSNFUG00015015687)	NR1H5 (ENSNFUG00015015639)	BRPF3 (ENSNFUG00015015625)	MAPK13 (ENSNFUG00015015554)	ENSNFUG00015015519	ANGPTL7 (ENSNFUG00015015497)	mtor (ENSNFUG00015015285)	ENSNFUG00015015207	agrn (ENSNFUG00015008539)	csde1 (ENSNFUG00015007295)	SIKE1 (ENSNFUG00015007150) ##22	ENSNFUG00015007145	HTR6 (ENSNFUG00015007141)	TMCO4 (ENSNFUG00015007135)	VWA1 (ENSNFUG00015007123)	RALGAPB (ENSNFUG00015007064)	PREX1 (ENSNFUG00015005878)	kcnq2a (ENSNFUG00015005616)	KLHL10 (ENSNFUG00015005583)	Nfu_g_1_001406 (ENSNFUG00015005581)	SI (ENSNFUG00015005570)	UCKL1 (ENSNFUG00015005436)	SAMD10A (ENSNFUG00015005376)	ENSNFUG00015005366	Nfu_g_1_001530 (ENSNFUG00015005360)	rad21l1 (ENSNFUG00015005349)
Cyprinodontoidei	ANCESTRAL SPECIES	3	ENSGT00940000156361.B	ENSGT00390000003344	ENSGT00940000166498	ENSGT00940000155056.a	ENSGT00940000159584	ENSGT00940000160682.a	ENSGT00930000151037	ENSGT00940000157064.a.a	ENSGT00940000158337	ENSGT00940000153876.A	ENSGT00940000163259.b	ENSGT00950000182931.B.a.b	ENSGT00950000183011.c.a.a	ENSGT00950000182839.B.a.b ##15	ENSGT00390000016950	ENSGT00390000018003.a ##22	ENSGT00940000168345	ENSGT01010000222287.A	ENSGT00390000001400	ENSGT00940000160734.d	ENSGT00700000104550.a.j.b	ENSGT00940000159925	ENSGT00940000160093.b	ENSGT00940000159329	ENSGT00390000000732	ENSGT00390000009748	ENSGT00940000159381.c	ENSGT00390000006931	ENSGT01050000244866.D.b.b	ENSGT00940000159472	ENSGT00390000000546
Poeciliinae	ANCESTRAL SPECIES	2					ENSGT00940000160682.a	ENSGT00930000151037.f	ENSGT00940000157064.a.a	ENSGT00930000151037.e	ENSGT00940000158337	ENSGT00940000153876.A	ENSGT00940000163259.b	ENSGT00950000182931.B.a.b	ENSGT00950000183011.c.a.a	ENSGT00950000182839.B.a.b ##15	ENSGT00390000016950.pb	ENSGT00390000018003.a ##22	ENSGT00940000168345	ENSGT01010000222287.A	ENSGT00390000001400	ENSGT00940000160734.d	ENSGT00700000104550.a.j.b	ENSGT00940000159925	ENSGT00940000160093.b	ENSGT00940000159329	ENSGT00390000000732	ENSGT00390000009748	ENSGT00940000159381.c	ENSGT00390000006931	ENSGT01050000244866.D.b.b	ENSGT00940000159472	ENSGT00390000000546
Poecilia	ANCESTRAL SPECIES	98						ENSGT00930000151037.f	ENSGT00940000157064.a.a	ENSGT00930000151037.e	ENSGT00940000158337	ENSGT00940000153876.A	ENSGT00940000163259.b	ENSGT00950000182931.B.a.b	ENSGT00950000183011.c.a.a	ENSGT00950000182839.B.a.b ##15	ENSGT00390000016950.pb	ENSGT00390000018003.a ##22	ENSGT00940000168345	ENSGT01010000222287.A	ENSGT00390000001400	ENSGT00940000160734.d	ENSGT00700000104550.a.j.b	ENSGT00940000159925	ENSGT00940000160093.b	ENSGT00940000159329.o
NAME_6	ANCESTRAL SPECIES	382													ENSGT00950000183011.c.a.a	ENSGT00950000182839.B.a.b ##15	ENSGT00390000016950.pb	ENSGT00390000018003.a ##22	ENSGT00940000168345	ENSGT01010000222287.A	ENSGT00390000001400	ENSGT00940000160734.d	ENSGT00700000104550.a.j.b
Sailfin molly	MODERN SPECIES	1981																SIKE1 (ENSPLAG00000023576) ##22	ENSPLAG00000023583	HTR6 (ENSPLAG00000023598)	TMCO4 (ENSPLAG00000023608)	vwa1 (ENSPLAG00000023619)
Amazon molly	MODERN SPECIES	818													ampd1 (ENSPFOG00000012771)	ENSPFOG00000012763 ##15	csde1 (ENSPFOG00000012664)	SIKE1 (ENSPFOG00000012605) ##22	ENSPFOG00000012591	ENSPFOG00000012572	TMCO4 (ENSPFOG00000012511)	vwa1 (ENSPFOG00000012483)	RALGAPB (ENSPFOG00000012015)	ENSPFOG00000011992
Guppy	MODERN SPECIES	459	VSTM2L (ENSPREG00000010941)	ctnnbl1 (ENSPREG00000010964)	ENSPREG00000011028	mtor (ENSPREG00000011061)	angptl7 (ENSPREG00000011093)	mtor (ENSPREG00000011138)	ENSPREG00000011169	agrn (ENSPREG00000011222)	ENSPREG00000011386	ptpn11b (ENSPREG00000011404)	ENSPREG00000011437	DENND2C (ENSPREG00000011464)	ampd1 (ENSPREG00000011534)	ENSPREG00000011578 ##15	csde1 (ENSPREG00000011631)	SIKE1 (ENSPREG00000011886) ##22	ENSPREG00000011895	HTR6 (ENSPREG00000011926)	ENSPREG00000011936	vwa1 (ENSPREG00000011949)	RALGAPB (ENSPREG00000012011)	ENSPREG00000012255	PREX1 (ENSPREG00000012299)	ENSPREG00000012441	kcnq2a (ENSPREG00000012457)	chrna4b (ENSPREG00000012536)	ENSPREG00000012563	prkar2aa (ENSPREG00000012594)	mgll (ENSPREG00000012613)	SLC26A6 (ENSPREG00000012628)	wdr6 (ENSPREG00000012649)
Platyfish	MODERN SPECIES			ENSXMAG00000021222	ENSXMAG00000023113	mtor (ENSXMAG00000013339)	ENSXMAG00000024349	angptl7 (ENSXMAG00000001358)	mtor (ENSXMAG00000001373)	agrn (ENSXMAG00000012381)	ENSXMAG00000023604	ptpn11b (ENSXMAG00000012317)	RNF223 (ENSXMAG00000012315)	DENND2C (ENSXMAG00000026573)	ampd1 (ENSXMAG00000009029)	csde1 (ENSXMAG00000009080)	ENSXMAG00000009079 ##15	SIKE1 (ENSXMAG00000000910) ##22	ENSXMAG00000021064	HTR6 (ENSXMAG00000006934)	TMCO4 (ENSXMAG00000006941)	vwa1 (ENSXMAG00000004822)	RALGAPB (ENSXMAG00000004783)	PREX1 (ENSXMAG00000028502)	kcnq2a (ENSXMAG00000001952)	chrna4b (ENSXMAG00000004772)	zgpat (ENSXMAG00000004759)	TTI1 (ENSXMAG00000004725)	VSTM2L (ENSXMAG00000004719)	ctnnbl1 (ENSXMAG00000004678)	ENSXMAG00000026194	E2F1 (ENSXMAG00000004669)	znf341 (ENSXMAG00000014133)
NAME_4	ANCESTRAL SPECIES	41	ENSGT00940000156361.B	ENSGT00390000003344	ENSGT00940000166498	ENSGT00940000155056.a	ENSGT00940000159584	ENSGT00940000160682.a	ENSGT00930000151037	ENSGT00940000157064.a.a	ENSGT00940000158337	ENSGT00940000153876.A	ENSGT00940000163259.b	ENSGT00950000182931.B.a.b	ENSGT00950000183011.c.a.a	ENSGT00950000182839.B.a.b ##15	ENSGT00390000016950	ENSGT00390000018003.a ##22	ENSGT00940000168345	ENSGT01010000222287.A	ENSGT00390000001400	ENSGT00940000160734.d	ENSGT00700000104550.a.j.b	ENSGT00940000159925	ENSGT00940000160093.b	ENSGT00940000159329	ENSGT00390000000732	ENSGT00390000009748	ENSGT00940000159381.c	ENSGT00390000006931	ENSGT01050000244866.D.b.b	ENSGT00940000159472	ENSGT00390000000546
Sheepshead minnow	MODERN SPECIES	271			BRPF3 (ENSCVAG00000001437)	MAPK13 (ENSCVAG00000001424)	ENSCVAG00000001419	mtor (ENSCVAG00000001414)	angptl7 (ENSCVAG00000001398)	agrn (ENSCVAG00000001393)	ENSCVAG00000001384	ptpn11b (ENSCVAG00000001381)	RNF223 (ENSCVAG00000001374)	DENND2C (ENSCVAG00000001371)	ampd1 (ENSCVAG00000001361)	ENSCVAG00000001353 ##15	csde1 (ENSCVAG00000001344)	SIKE1 (ENSCVAG00000001329) ##22	ENSCVAG00000001326	HTR6 (ENSCVAG00000000863)	TMCO4 (ENSCVAG00000001322)	ENSCVAG00000001317	ENSCVAG00000001316
Mummichog	MODERN SPECIES	2191	nr1h5 (ENSFHEG00000012303)	BRPF3 (ENSFHEG00000012223)	ENSFHEG00000012127	ENSFHEG00000012079	mtor (ENSFHEG00000012058)	angptl7 (ENSFHEG00000011903)	agrn (ENSFHEG00000011868)	ptpn11b (ENSFHEG00000011141)	ENSFHEG00000011052	RNF223 (ENSFHEG00000011048)	ENSFHEG00000000734	DENND2C (ENSFHEG00000011013)	ampd1 (ENSFHEG00000010948)	ENSFHEG00000010839 ##15	csde1 (ENSFHEG00000010799)	SIKE1 (ENSFHEG00000010567) ##22	ENSFHEG00000010550	HTR6 (ENSFHEG00000010544)	TMCO4 (ENSFHEG00000010535)	vwa1 (ENSFHEG00000010523)	RALGAPB (ENSFHEG00000010507)	PREX1 (ENSFHEG00000010459)	kcnq2a (ENSFHEG00000010323)	chrna4b (ENSFHEG00000009994)	zgpat (ENSFHEG00000009966)	TTI1 (ENSFHEG00000009939)	ENSFHEG00000009923	ctnnbl1 (ENSFHEG00000009893)	ENSFHEG00000009841	ENSFHEG00000009829	E2F1 (ENSFHEG00000009783)
Oryzias	ANCESTRAL SPECIES	4	ENSGT00390000003344	ENSGT00940000166498	ENSGT00940000155056.a	ENSGT00940000159584	ENSGT00940000160682.a	ENSGT00930000151037.g	ENSGT00940000157064.a.a	ENSGT00930000151037.h	ENSGT00940000158337	ENSGT00940000153876.A	ENSGT00940000163259.b.d	ENSGT00950000182931.B.a.b	ENSGT00950000183011.c.a.a	ENSGT00950000182839.B.a.b ##15	ENSGT00390000016950	ENSGT00390000018003.a ##22	ENSGT00940000168345.d	ENSGT01010000222287.A	ENSGT00390000001400	ENSGT00940000160734.d	ENSGT00700000104550.a.j.b	ENSGT00940000159925	ENSGT00940000160093.b	ENSGT00940000159329	ENSGT00390000000732	ENSGT00390000009748	ENSGT00940000159381.c	ENSGT00390000006931	ENSGT01050000244866.D.b.b	ENSGT00940000159472	ENSGT00390000000546
Oryzias_b	ANCESTRAL SPECIES	2	ENSGT00940000156361.B	ENSGT00390000003344	ENSGT00940000166498	ENSGT00940000155056.a	ENSGT00940000159584	ENSGT00940000160682.a	ENSGT00940000157064.a.a	ENSGT00930000151037.g	ENSGT00940000158337	ENSGT00940000153876.A	ENSGT00940000163259.b.d	ENSGT00950000182931.B.a.b	ENSGT00950000183011.c.a.a	ENSGT00950000182839.B.a.b ##15	ENSGT00390000016950	ENSGT00390000018003.a ##22	ENSGT00940000168345.d	ENSGT00940000164988	ENSGT00390000001400	ENSGT00940000160734.d	ENSGT00700000104550.a.j.b	ENSGT00940000159925	ENSGT00940000160093.b	ENSGT00940000159329	ENSGT00390000000732	ENSGT00390000009748	ENSGT00940000159381.c	ENSGT00390000006931	ENSGT01050000244866.D.b.b	ENSGT00940000159472	ENSGT00390000000546
Javanese ricefish	MODERN SPECIES	21	slc66a1 (ENSOJAG00000018777)	BRPF3 (ENSOJAG00000018841)	ENSOJAG00000018849	MAPK13 (ENSOJAG00000018884)	ENSOJAG00000019125	ENSOJAG00000005701	angptl7 (ENSOJAG00000007580)	agrn (ENSOJAG00000007722)	ptpn11b (ENSOJAG00000009503)	ENSOJAG00000011432	ENSOJAG00000011453	DENND2C (ENSOJAG00000011464)	ampd1 (ENSOJAG00000011541)	ENSOJAG00000013497 ##15	csde1 (ENSOJAG00000013596)	SIKE1 (ENSOJAG00000015009) ##22	ENSOJAG00000015019	ENSOJAG00000015026	TMCO4 (ENSOJAG00000015033)	vwa1 (ENSOJAG00000015048)	RALGAPB (ENSOJAG00000015070)	PREX1 (ENSOJAG00000015194)	kcnq2a (ENSOJAG00000015866)	chrna4b (ENSOJAG00000016034)	zgpat (ENSOJAG00000016037)	TTI1 (ENSOJAG00000016045)	ENSOJAG00000016053	ctnnbl1 (ENSOJAG00000016080)	ENSOJAG00000016730	ENSOJAG00000016806	E2F1 (ENSOJAG00000016833)
Indian medaka	MODERN SPECIES	23	MAPK13 (ENSOMEG00000016551)	ENSOMEG00000016521	ENSOMEG00000016502	angptl7 (ENSOMEG00000016482)	mtor (ENSOMEG00000016453)	agrn (ENSOMEG00000016348)	ENSOMEG00000015993	ptpn11b (ENSOMEG00000015961)	ENSOMEG00000015880	ENSOMEG00000015863	ampd1 (ENSOMEG00000015807)	ENSOMEG00000015735	ENSOMEG00000015717	ENSOMEG00000000993 ##15	csde1 (ENSOMEG00000015656)	SIKE1 (ENSOMEG00000015539) ##22	ENSOMEG00000015509	ENSOMEG00000015489	TMCO4 (ENSOMEG00000015469)	vwa1 (ENSOMEG00000015422)	RALGAPB (ENSOMEG00000015358)	PREX1 (ENSOMEG00000015158)	kcnq2a (ENSOMEG00000014836)	chrna4b (ENSOMEG00000014686)	zgpat (ENSOMEG00000014655)	TTI1 (ENSOMEG00000014623)	ENSOMEG00000014584	ctnnbl1 (ENSOMEG00000014563)	ENSOMEG00000014470	znf341 (ENSOMEG00000014403)	E2F1 (ENSOMEG00000014342)
Oryzias_a	ANCESTRAL SPECIES		ENSGT00390000003344	ENSGT00940000166498	ENSGT00940000155056.a	ENSGT00940000159584	ENSGT00940000160682.a	ENSGT00930000151037.g	ENSGT00940000157064.a.a	ENSGT00930000151037.h	ENSGT00940000158337	ENSGT00940000153876.A	ENSGT00940000163259.b.d	ENSGT00950000182931.B.a.b	ENSGT00950000183011.c.a.a	ENSGT00950000182839.B.a.b ##15	ENSGT00390000016950	ENSGT00390000018003.a ##22	ENSGT00940000168345.d	ENSGT01010000222287.A	ENSGT00390000001400	ENSGT00940000160734.d	ENSGT00700000104550.a.j.b	ENSGT00940000159925	ENSGT00940000160093.b	ENSGT00940000159329	ENSGT00390000000732	ENSGT00390000009748	ENSGT00940000159381.c	ENSGT00390000006931	ENSGT01050000244866.D.b.b	ENSGT00940000159472	ENSGT00390000000546
Chinese medaka	DUPLICATION
Chinese medaka	MODERN SPECIES	446								mtor (ENSOSIG00000010246)	agrn (ENSOSIG00000010284)	ENSOSIG00000012778	ENSOSIG00000012779	DENND2C (ENSOSIG00000012781)	ampd1 (ENSOSIG00000012814)	ENSOSIG00000013981 ##15	csde1 (ENSOSIG00000014072)	SIKE1 (ENSOSIG00000017583) ##22	ENSOSIG00000017588	HTR6 (ENSOSIG00000017589)	vwa1 (ENSOSIG00000017609)	RALGAPB (ENSOSIG00000017630)	PREX1 (ENSOSIG00000017824)	kcnq2a (ENSOSIG00000018673)	chrna4b (ENSOSIG00000018753)	zgpat (ENSOSIG00000018821)	TTI1 (ENSOSIG00000018823)	ENSOSIG00000018825	ctnnbl1 (ENSOSIG00000018845)	E2F1 (ENSOSIG00000018922)	znf341 (ENSOSIG00000018929)	itchb (ENSOSIG00000018967)	ENSOSIG00000019201
Chinese medaka	MODERN SPECIES	4391																SIKE1 (ENSOSIG00000005368) ##22
Japanese Medaka HdrR	MODERN SPECIES	21	ENSORLG00000030631	ENSORLG00000000358	ENSORLG00000000393	ENSORLG00000000403	mtor (ENSORLG00000026268)	angptl7 (ENSORLG00000000502)	mtor (ENSORLG00000000484)	agrn (ENSORLG00000000529)	ptpn11b (ENSORLG00000000613)	ENSORLG00000023532	DENND2C (ENSORLG00000000628)	ENSORLG00000022588	ampd1 (ENSORLG00000000655)	ENSORLG00000027709 ##15	csde1 (ENSORLG00000000707)	SIKE1 (ENSORLG00000000742) ##22	ENSORLG00000024698	HTR6 (ENSORLG00000023384)	TMCO4 (ENSORLG00000000757)	vwa1 (ENSORLG00000000761)	RALGAPB (ENSORLG00000000780)	PREX1 (ENSORLG00000000806)	ENSORLG00000027858	kcnq2a (ENSORLG00000000854)	ENSORLG00000022428	chrna4b (ENSORLG00000000865)	zgpat (ENSORLG00000000880)	TTI1 (ENSORLG00000000898)	ENSORLG00000028351	ENSORLG00000023187	ctnnbl1 (ENSORLG00000000933)
Ovalentaria_B	ANCESTRAL SPECIES	2	ENSGT00940000156361.B	ENSGT00390000003344	ENSGT00940000166498	ENSGT00940000155056.a	ENSGT00940000159584	ENSGT00940000160682.a	ENSGT00940000157064.a.a	ENSGT00930000151037	ENSGT00940000158337	ENSGT00940000153876.A	ENSGT00940000163259.b	ENSGT00950000182931.B.a.b	ENSGT00950000183011.c.a.a	ENSGT00950000182839.B.a.b ##15	ENSGT00390000016950	ENSGT00390000018003.a ##22	ENSGT00940000168345	ENSGT01010000222287.A	ENSGT00390000001400	ENSGT00940000160734.d	ENSGT00700000104550.a.j.b	ENSGT00940000159925	ENSGT00940000160093.b	ENSGT00940000159329	ENSGT00390000000732	ENSGT00390000009748	ENSGT00940000159381.c	ENSGT00390000006931	ENSGT01050000244866.D.b.b	ENSGT00940000159472	ENSGT00390000000546
Pomacentridae	ANCESTRAL SPECIES	55	ENSGT00940000156361.B	ENSGT00390000003344	ENSGT00940000166498	ENSGT00940000155056.a	ENSGT00940000159584	ENSGT00940000160682.a	ENSGT00930000151037	ENSGT00940000157064.a.a	ENSGT00940000158337	ENSGT00940000153876.A	ENSGT00940000163259.b	ENSGT00950000182931.B.a.b	ENSGT00950000183011.c.a.a	ENSGT00950000182839.B.a.b ##15	ENSGT00390000016950	ENSGT00390000018003.a ##22	ENSGT00940000168345	ENSGT01010000222287.A	ENSGT00390000001400	ENSGT00940000160734.d	ENSGT00700000104550.a.j.b	ENSGT00940000159925	ENSGT00940000160093.b	ENSGT00940000159329	ENSGT00390000000732	ENSGT00390000009748	ENSGT00940000159381.c	ENSGT00390000006931	ENSGT00940000159472	ENSGT00390000000546
Pomacentridae_A	ANCESTRAL SPECIES	35	ENSGT00940000156361.B	ENSGT00390000003344	ENSGT00940000166498	ENSGT00940000155056.a	ENSGT00940000159584	ENSGT00940000160682.a	ENSGT00930000151037	ENSGT00940000157064.a.a	ENSGT00940000158337	ENSGT00940000153876.A	ENSGT00940000163259.b	ENSGT00950000182931.B.a.b	ENSGT00950000183011.c.a.a	ENSGT00950000182839.B.a.b ##15	ENSGT00390000016950	ENSGT00390000018003.a ##22	ENSGT00940000168345	ENSGT01010000222287.A	ENSGT00390000001400	ENSGT00940000160734.d	ENSGT00700000104550.a.j.b	ENSGT00940000159925	ENSGT00940000160093.b	ENSGT00940000159329	ENSGT00390000000732	ENSGT00390000009748	ENSGT00940000159381.c	ENSGT00390000006931	ENSGT00940000159472	ENSGT00390000000546	ENSGT00390000000020.a
Amphiprion	ANCESTRAL SPECIES	46	ENSGT00940000156361.B	ENSGT00390000003344	ENSGT00940000166498	ENSGT00940000155056.a	ENSGT00940000159584	ENSGT00940000160682.a	ENSGT00940000157064.a.a	ENSGT00930000151037	ENSGT00940000158337	ENSGT00940000153876.A	ENSGT00940000163259.b	ENSGT00950000182931.B.a.b	ENSGT00950000183011.c.a.a	ENSGT00950000182839.B.a.b ##15	ENSGT00390000016950	ENSGT00390000018003.a ##22	ENSGT00940000168345	ENSGT01010000222287.A	ENSGT00390000001400	ENSGT00940000160734.d	ENSGT00700000104550.a.j.b	ENSGT00940000159925	ENSGT00940000160093.b	ENSGT00940000159329	ENSGT00390000000732	ENSGT00390000009748	ENSGT00940000159381.c	ENSGT00390000006931	ENSGT00940000159472	ENSGT00390000000546	ENSGT00390000000020.a
Clown anemonefish	MODERN SPECIES	3326												DENND2C (ENSAOCG00000011318)	ampd1 (ENSAOCG00000011343)	ENSAOCG00000000711 ##15	csde1 (ENSAOCG00000011510)	SIKE1 (ENSAOCG00000011552) ##22	ENSAOCG00000011561	HTR6 (ENSAOCG00000002286)	TMCO4 (ENSAOCG00000011599)	vwa1 (ENSAOCG00000011612)	RALGAPB (ENSAOCG00000000730)	PREX1 (ENSAOCG00000011977)	kcnq2a (ENSAOCG00000012046)
Orange clownfish	MODERN SPECIES	22	nr1h5 (ENSAPEG00000008738)	BRPF3 (ENSAPEG00000008654)	MAPK13 (ENSAPEG00000008580)	ENSAPEG00000008559	ENSAPEG00000008535	angptl7 (ENSAPEG00000008509)	mtor (ENSAPEG00000008291)	agrn (ENSAPEG00000007762)	ptpn11b (ENSAPEG00000007668)	ENSAPEG00000007645	ptpn11b (ENSAPEG00000007583)	DENND2C (ENSAPEG00000007457)	ampd1 (ENSAPEG00000007395)	ENSAPEG00000007373 ##15	csde1 (ENSAPEG00000007194)	SIKE1 (ENSAPEG00000007134) ##22	ENSAPEG00000007118	ENSAPEG00000007097	TMCO4 (ENSAPEG00000007080)	vwa1 (ENSAPEG00000007069)	RALGAPB (ENSAPEG00000006935)	PREX1 (ENSAPEG00000006771)	kcnq2a (ENSAPEG00000006700)	chrna4b (ENSAPEG00000006594)	zgpat (ENSAPEG00000006555)	TTI1 (ENSAPEG00000006505)	ENSAPEG00000006489	ctnnbl1 (ENSAPEG00000006430)	ENSAPEG00000006415	znf341 (ENSAPEG00000006358)	MTCH1 (ENSAPEG00000006331)
Spiny chromis	MODERN SPECIES	1532														ENSAPOG00000015564 ##15	csde1 (ENSAPOG00000015538)	SIKE1 (ENSAPOG00000015374) ##22	ENSAPOG00000000428	HTR6 (ENSAPOG00000015346)	TMCO4 (ENSAPOG00000015322)	vwa1 (ENSAPOG00000015308)	RALGAPB (ENSAPOG00000015293)
Bicolor damselfish	MODERN SPECIES	976													ampd1 (ENSSPAG00000000873)	ENSSPAG00000000845 ##15	csde1 (ENSSPAG00000000716)	SIKE1 (ENSSPAG00000000699) ##22	ENSSPAG00000000682	HTR6 (ENSSPAG00000000660)	TMCO4 (ENSSPAG00000000559)	vwa1 (ENSSPAG00000000544)	RALGAPB (ENSSPAG00000000395)	ENSSPAG00000000379	PREX1 (ENSSPAG00000000242)	kcnq2a (ENSSPAG00000000195)	chrna4b (ENSSPAG00000022482)	zgpat (ENSSPAG00000022473)	TTI1 (ENSSPAG00000022442)
Cichlidae	ANCESTRAL SPECIES		ENSGT00940000156361.B	ENSGT00390000003344	ENSGT00940000166498	ENSGT00940000155056.a	ENSGT00940000159584	ENSGT00940000160682.a	ENSGT00940000157064.a.a	ENSGT00930000151037	ENSGT00940000158337	ENSGT00940000153876.A	ENSGT00940000163259.b	ENSGT00950000182931.B.a.b	ENSGT00950000183011.c.a.a	ENSGT00950000182839.B.a.b ##15	ENSGT00390000016950	ENSGT00390000018003.a ##22	ENSGT00940000168345	ENSGT01010000222287.A	ENSGT00390000001400	ENSGT00940000160734.d	ENSGT00700000104550.a.j.b	ENSGT00940000159925	ENSGT00940000160093.b	ENSGT00940000159329	ENSGT00390000000732	ENSGT00390000009748	ENSGT00940000159381.c	ENSGT00390000006931	ENSGT01050000244866.D.b.b	ENSGT00940000159472	ENSGT00390000000546
Pseudocrenilabrinae	ANCESTRAL SPECIES	5	ENSGT00940000156361.B	ENSGT00390000003344	ENSGT00940000166498	ENSGT00940000155056.a	ENSGT00940000159584	ENSGT00940000160682.a	ENSGT00940000157064.a.a	ENSGT00930000151037	ENSGT00940000158337	ENSGT00940000153876.A	ENSGT00940000163259.b	ENSGT00950000182931.B.a.b	ENSGT00950000183011.c.a.a	ENSGT00950000182839.B.a.b ##15	ENSGT00390000016950	ENSGT00390000018003.a ##22	ENSGT00940000168345	ENSGT01010000222287.A	ENSGT00390000001400	ENSGT00940000160734.d	ENSGT00700000104550.a.j.b	ENSGT00940000159925	ENSGT00940000160093.b	ENSGT00940000159329	ENSGT00390000000732	ENSGT00390000009748	ENSGT00940000158459	ENSGT00940000161187	ENSGT00390000012439	ENSGT00940000158097	ENSGT00940000160919
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	17	ENSGT00940000156361.B	ENSGT00390000003344	ENSGT00940000166498	ENSGT00940000155056.a	ENSGT00940000159584	ENSGT00940000160682.a	ENSGT00940000157064.a.a	ENSGT00930000151037	ENSGT00940000158337	ENSGT00940000153876.A	ENSGT00940000163259.b	ENSGT00950000182931.B.a.b	ENSGT00950000183011.c.a.a	ENSGT00950000182839.B.a.b ##15	ENSGT00390000016950	ENSGT00390000018003.a ##22	ENSGT00940000168345	ENSGT01010000222287.A	ENSGT00390000001400	ENSGT00940000160734.d	ENSGT00700000104550.a.j.b	ENSGT00940000159925	ENSGT00940000160093.b	ENSGT00940000159329	ENSGT00390000000732	ENSGT00390000009748	ENSGT00940000158459	ENSGT00940000161187	ENSGT00390000012439	ENSGT00940000158097	ENSGT00940000160919
Haplochromini	ANCESTRAL SPECIES	18	ENSGT00940000156361.B	ENSGT00390000003344	ENSGT00940000166498	ENSGT00940000155056.a	ENSGT00940000159584	ENSGT00940000160682.a	ENSGT00940000157064.a.a	ENSGT00930000151037	ENSGT00940000158337	ENSGT00940000153876.A	ENSGT00940000163259.b	ENSGT00950000182931.B.a.b	ENSGT00950000183011.c.a.a	ENSGT00950000182839.B.a.b ##15	ENSGT00390000016950	ENSGT00390000018003.a ##22	ENSGT00940000168345	ENSGT01010000222287.A	ENSGT00390000001400	ENSGT00940000160734.d	ENSGT00700000104550.a.j.b	ENSGT00940000159925	ENSGT00940000160093.b	ENSGT00940000159329	ENSGT00390000000732	ENSGT00390000009748	ENSGT00940000178462	ENSGT00940000158459	ENSGT00940000161187	ENSGT00390000012439	ENSGT00940000158097
Burton s mouthbrooder	MODERN SPECIES	587						ENSHBUG00000019427	angptl7 (ENSHBUG00000019456)	mtor (ENSHBUG00000019711)	agrn (ENSHBUG00000019878)	ENSHBUG00000019927	RNF223 (ENSHBUG00000019945)	DENND2C (ENSHBUG00000019971)	ampd1 (ENSHBUG00000020027)	ENSHBUG00000000596 ##15	csde1 (ENSHBUG00000020315)	SIKE1 (ENSHBUG00000020352) ##22	ENSHBUG00000020375	HTR6 (ENSHBUG00000020391)	TMCO4 (ENSHBUG00000020427)	vwa1 (ENSHBUG00000020443)	RALGAPB (ENSHBUG00000020623)	PREX1 (ENSHBUG00000020659)
Haplochromini_A	ANCESTRAL SPECIES	22	ENSGT00940000156361.B	ENSGT00390000003344	ENSGT00940000166498	ENSGT00940000155056.a	ENSGT00940000159584	ENSGT00940000160682.a.e	ENSGT00940000157064.a.a	ENSGT00930000151037	ENSGT00940000158337	ENSGT00940000153876.A	ENSGT00940000163259.b	ENSGT00950000182931.B.a.b	ENSGT00950000183011.c.a.a	ENSGT00950000182839.B.a.b ##15	ENSGT00390000016950	ENSGT00390000018003.a ##22	ENSGT00940000168345	ENSGT01010000222287.A	ENSGT00390000001400	ENSGT00940000160734.d	ENSGT00700000104550.a.j.b	ENSGT00940000159925	ENSGT00940000160093.b	ENSGT00940000159329	ENSGT00390000000732	ENSGT00390000009748	ENSGT00940000178462	ENSGT00940000158459	ENSGT00940000161187	ENSGT00390000012439	ENSGT00940000158097
P. nyererei	MODERN SPECIES	334	trim33 (ENSPNYG00000014552)	slc66a1 (ENSPNYG00000014512)	nr1h5 (ENSPNYG00000014485)	BRPF3 (ENSPNYG00000014375)	MAPK13 (ENSPNYG00000014304)	ENSPNYG00000014286	angptl7 (ENSPNYG00000014266)	mtor (ENSPNYG00000014120)	agrn (ENSPNYG00000014019)	ptpn11b (ENSPNYG00000013984)	RNF223 (ENSPNYG00000013966)	DENND2C (ENSPNYG00000013944)	ampd1 (ENSPNYG00000013894)	ENSPNYG00000013856 ##15	csde1 (ENSPNYG00000013745)	SIKE1 (ENSPNYG00000013674) ##22	micos10 (ENSPNYG00000013653)	HTR6 (ENSPNYG00000013635)	TMCO4 (ENSPNYG00000013618)	vwa1 (ENSPNYG00000013596)	RALGAPB (ENSPNYG00000013512)	PREX1 (ENSPNYG00000013363)	kcnq2a (ENSPNYG00000013306)	chrna4b (ENSPNYG00000013286)	zgpat (ENSPNYG00000013216)	TTI1 (ENSPNYG00000013179)	ENSPNYG00000013154	ENSPNYG00000013136	MMP23B (ENSPNYG00000013104)	ubiad1 (ENSPNYG00000013083)	mib2 (ENSPNYG00000013047)
Haplochromini_B	ANCESTRAL SPECIES	19						ENSGT00940000160682.a.f	ENSGT00940000157064.a.a	ENSGT00930000151037	ENSGT00940000158337	ENSGT00940000153876.A	ENSGT00940000163259.b	ENSGT00950000182931.B.a.b	ENSGT00950000183011.c.a.a	ENSGT00950000182839.B.a.b ##15	ENSGT00390000016950	ENSGT00390000018003.a ##22	ENSGT00940000168345	ENSGT01010000222287.A	ENSGT00390000001400	ENSGT00940000160734.d	ENSGT00700000104550.a.j.b	ENSGT00940000159925	ENSGT00940000160093.b	ENSGT00940000159329	ENSGT00390000000732	ENSGT00390000009748	ENSGT00940000178462	ENSGT00940000158459	ENSGT00940000161187	ENSGT00390000012439	ENSGT00940000158097
Zebra mbuna	MODERN SPECIES	1103	ctnnbl1 (ENSMZEG00005021823)	ENSMZEG00005021819	ENSMZEG00005021815	szrd1 (ENSMZEG00005021812)	atp13a2 (ENSMZEG00005021792)	SDHB (ENSMZEG00005021787)	TMEM240 (ENSMZEG00005021780)	otud3 (ENSMZEG00005021772)	bcas2 (ENSMZEG00005021757)	ptpn11b (ENSMZEG00005021748)	RNF223 (ENSMZEG00005021743)	ENSMZEG00005021735	ampd1 (ENSMZEG00005021714)	ENSMZEG00005021708 ##15	csde1 (ENSMZEG00005021675)	SIKE1 (ENSMZEG00005021665) ##22	ENSMZEG00005021664	HTR6 (ENSMZEG00005021663)	TMCO4 (ENSMZEG00005021660)	vwa1 (ENSMZEG00005021656)	RALGAPB (ENSMZEG00005021651)	PREX1 (ENSMZEG00005021638)	kcnq2a (ENSMZEG00005021631)	chrna4b (ENSMZEG00005021625)	zgpat (ENSMZEG00005021620)	TTI1 (ENSMZEG00005021616)	ENSMZEG00005021611	cdk11b (ENSMZEG00005021598)	MMP23B (ENSMZEG00005021593)	ubiad1 (ENSMZEG00005021589)	mib2 (ENSMZEG00005021579)
Eastern happy	MODERN SPECIES	12	PLXNA1 (ENSACLG00000012234)	chchd6a (ENSACLG00000012331)	ENSACLG00000012353	ENSACLG00000012364	ENSACLG00000012377	ENSACLG00000012423	mtor (ENSACLG00000012434)	angptl7 (ENSACLG00000012581)	agrn (ENSACLG00000012612)	ptpn11b (ENSACLG00000013241)	RNF223 (ENSACLG00000013260)	DENND2C (ENSACLG00000013264)	ampd1 (ENSACLG00000013276)	ENSACLG00000013290 ##15	csde1 (ENSACLG00000013296)	SIKE1 (ENSACLG00000013315) ##22	ENSACLG00000013318	HTR6 (ENSACLG00000013322)	TMCO4 (ENSACLG00000013327)	vwa1 (ENSACLG00000013358)	RALGAPB (ENSACLG00000013369)	PREX1 (ENSACLG00000013527)	kcnq2a (ENSACLG00000013614)	chrna4b (ENSACLG00000013765)	zgpat (ENSACLG00000013778)	TTI1 (ENSACLG00000013798)	ENSACLG00000013858	ENSACLG00000013935	twist3 (ENSACLG00000013952)	HDAC7 (ENSACLG00000013983)	VDR (ENSACLG00000014083)
Lyretail cichlid	MODERN SPECIES	298	slc66a1 (ENSNBRG00000019982)	nr1h5 (ENSNBRG00000020009)	BRPF3 (ENSNBRG00000020043)	ENSNBRG00000020065	ENSNBRG00000020100	mtor (ENSNBRG00000020145)	angptl7 (ENSNBRG00000020279)	agrn (ENSNBRG00000020301)	ptpn11b (ENSNBRG00000020391)	RNF223 (ENSNBRG00000020697)	ENSNBRG00000020707	ampd1 (ENSNBRG00000020746)	ENSNBRG00000020793 ##15	csde1 (ENSNBRG00000020808)	znhit1 (ENSNBRG00000020846)	SIKE1 (ENSNBRG00000020856) ##22	ENSNBRG00000020862	HTR6 (ENSNBRG00000020872)	TMCO4 (ENSNBRG00000020883)	vwa1 (ENSNBRG00000020935)	RALGAPB (ENSNBRG00000020976)	PREX1 (ENSNBRG00000021211)	kcnq2a (ENSNBRG00000021311)	chrna4b (ENSNBRG00000021495)	zgpat (ENSNBRG00000021521)	TTI1 (ENSNBRG00000021577)	ENSNBRG00000021608	cdk11b (ENSNBRG00000021642)	MMP23B (ENSNBRG00000021726)	ubiad1 (ENSNBRG00000021744)	mib2 (ENSNBRG00000021760)
Nile tilapia	MODERN SPECIES	12	slc66a1 (ENSONIG00000009250)	nr1h5 (ENSONIG00000009252)	BRPF3 (ENSONIG00000032735)	ENSONIG00000009265	ENSONIG00000037033	angptl7 (ENSONIG00000009286)	mtor (ENSONIG00000009275)	agrn (ENSONIG00000009289)	ptpn11b (ENSONIG00000009293)	RNF223 (ENSONIG00000009295)	ENSONIG00000034111	DENND2C (ENSONIG00000009297)	ampd1 (ENSONIG00000009299)	ENSONIG00000041385 ##15	csde1 (ENSONIG00000009309)	SIKE1 (ENSONIG00000009319) ##22	ENSONIG00000035010	ENSONIG00000009321	TMCO4 (ENSONIG00000009323)	vwa1 (ENSONIG00000009327)	RALGAPB (ENSONIG00000009329)	PREX1 (ENSONIG00000009336)	kcnq2a (ENSONIG00000009352)	chrna4b (ENSONIG00000009364)	zgpat (ENSONIG00000009365)	ENSONIG00000035461	ENSONIG00000009367	ENSONIG00000034132	ENSONIG00000017911	las1l (ENSONIG00000031944)	cdk11b (ENSONIG00000006512)
Midas cichlid	MODERN SPECIES	869	slc66a1 (ENSACIG00000014650)	nr1h5 (ENSACIG00000014685)	BRPF3 (ENSACIG00000014721)	MAPK13 (ENSACIG00000014771)	ENSACIG00000014807	mtor (ENSACIG00000014848)	angptl7 (ENSACIG00000014964)	agrn (ENSACIG00000014994)	ptpn11b (ENSACIG00000015071)	RNF223 (ENSACIG00000015101)	ENSACIG00000015103	ampd1 (ENSACIG00000015125)	ENSACIG00000015161 ##15	csde1 (ENSACIG00000015175)	ENSACIG00000015225	SIKE1 (ENSACIG00000015228) ##22	ENSACIG00000015244	HTR6 (ENSACIG00000015275)	TMCO4 (ENSACIG00000015285)	vwa1 (ENSACIG00000015320)	RALGAPB (ENSACIG00000015365)	PREX1 (ENSACIG00000015727)	kcnq2a (ENSACIG00000015825)	chrna4b (ENSACIG00000015916)	zgpat (ENSACIG00000015939)	TTI1 (ENSACIG00000016000)	VSTM2L (ENSACIG00000016084)	ctnnbl1 (ENSACIG00000016096)	ENSACIG00000016134	E2F1 (ENSACIG00000016163)	znf341 (ENSACIG00000016180)
Tiger tail seahorse	MODERN SPECIES	90							angptl7 (ENSHCOG00000003442)	mtor (ENSHCOG00000003681)	agrn (ENSHCOG00000003829)	ptpn11b (ENSHCOG00000003885)	RNF223 (ENSHCOG00000003924)	DENND2C (ENSHCOG00000003932)	ampd1 (ENSHCOG00000003972)	ENSHCOG00000004041 ##15	csde1 (ENSHCOG00000004158)	SIKE1 (ENSHCOG00000004187) ##22	ENSHCOG00000004202	HTR6 (ENSHCOG00000004211)	TMCO4 (ENSHCOG00000004214)	vwa1 (ENSHCOG00000004227)	ENSHCOG00000004319	PREX1 (ENSHCOG00000004400)	kcnq2a (ENSHCOG00000004440)	ENSHCOG00000000840	SLCO4A1 (ENSHCOG00000004468)	gata5 (ENSHCOG00000004480)	ENSHCOG00000004491	HCK (ENSHCOG00000004526)	tm9sf4 (ENSHCOG00000004563)	chrna4b (ENSHCOG00000004588)	zgpat (ENSHCOG00000004674)
Pinecone sodierfish	MODERN SPECIES	21	slc66a1 (ENSMMDG00005023377)	nr1h5 (ENSMMDG00005023371)	BRPF3 (ENSMMDG00005023365)	MAPK13 (ENSMMDG00005023359)	ENSMMDG00005023357	angptl7 (ENSMMDG00005023356)	mtor (ENSMMDG00005022828)	agrn (ENSMMDG00005022344)	ptpn11b (ENSMMDG00005022326)	RNF223 (ENSMMDG00005022323)	ENSMMDG00005022321	DENND2C (ENSMMDG00005022313)	ampd1 (ENSMMDG00005021870)	ENSMMDG00005021853 ##15	csde1 (ENSMMDG00005018036)	SIKE1 (ENSMMDG00005017938) ##22	ENSMMDG00005017936	ENSMMDG00005017934	TMCO4 (ENSMMDG00005017921)	vwa1 (ENSMMDG00005017916)	RALGAPB (ENSMMDG00005017888)	PREX1 (ENSMMDG00005012262)	kcnq2a (ENSMMDG00005012154)	chrna4b (ENSMMDG00005011861)	zgpat (ENSMMDG00005011854)	TTI1 (ENSMMDG00005011850)	ENSMMDG00005011847	ctnnbl1 (ENSMMDG00005010737)	ENSMMDG00005010700	E2F1 (ENSMMDG00005010698)	znf341 (ENSMMDG00005010682)
Cod	MODERN SPECIES		ENSGMOG00000029644	ENSGMOG00000010338	ENSGMOG00000010358	ENSGMOG00000009725	ENSGMOG00000009770	ENSGMOG00000023095	ENSGMOG00000028189	ENSGMOG00000026195	ENSGMOG00000036200	ENSGMOG00000027008	ENSGMOG00000025412	DENND2C (ENSGMOG00000012718)	ENSGMOG00000012722	ENSGMOG00000022869 ##15	CSDE1 (ENSGMOG00000012731)	ENSGMOG00000012741 ##22	ENSGMOG00000012747	ENSGMOG00000037186	ENSGMOG00000012759	vwa1 (ENSGMOG00000006448)	ENSGMOG00000006453	ENSGMOG00000006488	ENSGMOG00000034246	ENSGMOG00000006540	ENSGMOG00000006567	ENSGMOG00000028791	TTI1 (ENSGMOG00000023842)	ENSGMOG00000030056	ENSGMOG00000031111	ENSGMOG00000025881	ENSGMOG00000020231
Protacanthopterygii	ANCESTRAL SPECIES	89	ENSGT00390000016016.B	ENSGT00940000153541.B.k	ENSGT00940000164248.b.a	ENSGT00940000155311.C.d	ENSGT00390000008714.a	ENSGT00940000166720.c	ENSGT00940000165254.c.b	ENSGT00940000166498	ENSGT00390000003344	ENSGT00940000156361.B	ENSGT00390000014494	ENSGT00950000182931.B.a.b	ENSGT00950000183011.c.a.a	ENSGT00950000182839.B.a.b ##15	ENSGT00390000016950	ENSGT00390000018003.a ##22	ENSGT00940000168269	ENSGT00940000157037.a.d	ENSGT00390000001400	ENSGT00940000160734.d	ENSGT00390000016392	ENSGT00400000023987.d	ENSGT00730000111059.b	ENSGT00390000013558.a.b	ENSGT00940000159714	ENSGT00390000005532.l	ENSGT00500000045021.d	ENSGT00940000157087.a.b	ENSGT00940000165103.a	ENSGT00950000183106.b	ENSGT00940000164106
Salmoninae	ANCESTRAL SPECIES	166	ENSGT00390000016016.B	ENSGT00940000153541.B.k	ENSGT00940000164248.b.a.c	ENSGT00940000155311.C.d.c	ENSGT00390000008714.a.y	ENSGT00950000183145.E	ENSGT00950000183145.B.a.a.a.b.b.a.b	ENSGT00940000165254.c.b.c	ENSGT00940000166498.a	ENSGT00390000003344.f	ENSGT00940000156361.B.f	ENSGT00390000014494.xb	ENSGT00950000182931.B.a.b.j	ENSGT00950000183011.c.a.a.f	ENSGT00390000016950.ob	ENSGT00390000018003.a ##22	ENSGT00940000154484.A	ENSGT00390000001400	ENSGT00940000160734.d.d	ENSGT00390000016392.p	ENSGT00400000023987.d.d	ENSGT00730000111059.b	ENSGT00390000013558.a.b.b	ENSGT00390000005532.l	ENSGT00500000045021.d.d	ENSGT00940000157087.a.b.r.b	ENSGT00940000165103.a.f	ENSGT00940000159957.f	ENSGT00390000017294.h	ENSGT00390000015175.h	ENSGT00940000164482
Salmoninae_a	ANCESTRAL SPECIES	14	ENSGT00950000182945.b.a.a.a.b.b.d.a	ENSGT00390000016016.B	ENSGT00940000153541.B.k	ENSGT00940000164248.b.a.c	ENSGT00940000155311.C.d.c	ENSGT00390000008714.a.y	ENSGT00950000183145.B.a.a.a.b.b.a.b	ENSGT00940000165254.c.b.c	ENSGT00940000166498.a	ENSGT00390000003344.f	ENSGT00940000156361.B.f	ENSGT00390000014494.xb	ENSGT00950000182931.B.a.b.j	ENSGT00950000183011.c.a.a.f	ENSGT00390000016950.ob	ENSGT00390000018003.a ##22	ENSGT00940000154484.A	ENSGT00390000001400	ENSGT00940000160734.d.d	ENSGT00390000016392.p	ENSGT00400000023987.d.d	ENSGT00730000111059.b	ENSGT00390000013558.a.b.b	ENSGT00390000005532.l	ENSGT00500000045021.d.d	ENSGT00940000157087.a.b.r.b	ENSGT00940000165103.a.f	ENSGT00390000010674.b.f	ENSGT00940000159957.f	ENSGT00390000017294.h	ENSGT00390000015175.h
Salmo	ANCESTRAL SPECIES	16	ENSGT00950000182945.b.a.a.a.b.b.d.a	ENSGT00390000016016.B	ENSGT00940000153541.B.k	ENSGT00940000164248.b.a.c	ENSGT00940000155311.C.d.c	ENSGT00390000008714.a.y	ENSGT00950000183145.B.a.a.a.b.b.a.b	ENSGT00940000165254.c.b.c	ENSGT00940000166498.a	ENSGT00390000003344.f	ENSGT00940000156361.B.f	ENSGT00390000014494.xb	ENSGT00950000182931.B.a.b.j	ENSGT00950000183011.c.a.a.f	ENSGT00390000016950.ob	ENSGT00390000018003.a ##22	ENSGT00940000154484.A	ENSGT00390000001400	ENSGT00940000160734.d.d	ENSGT00390000016392.p	ENSGT00400000023987.d.d	ENSGT00730000111059.b	ENSGT00390000013558.a.b.b	ENSGT00390000005532.l	ENSGT00500000045021.d.d	ENSGT00940000157087.a.b.r.b	ENSGT00940000165103.a.f	ENSGT00390000010674.b.f	ENSGT00940000159957.f	ENSGT00390000017294.h	ENSGT00390000015175.h
Atlantic salmon	MODERN SPECIES	6	si:dkey-6n6.1 (ENSSSAG00000007349)	ENSSSAG00000097196	bgna (ENSSSAG00000105101)	dedd (ENSSSAG00000007365)	ENSSSAG00000007370	atp2b3a (ENSSSAG00000007463)	ENSSSAG00000085339	nr1h5 (ENSSSAG00000022951)	ENSSSAG00000119583	pqlc2 (ENSSSAG00000023170)	ENSSSAG00000114266	trim33 (ENSSSAG00000025557)	dennd2c (ENSSSAG00000043382)	ampd1 (ENSSSAG00000043594)	CSDE1 (ENSSSAG00000048052)	sike1 (ENSSSAG00000088203) ##22	ENSSSAG00000048754	tmco4 (ENSSSAG00000048800)	vwa1 (ENSSSAG00000049613)	otud3 (ENSSSAG00000049625)	ENSSSAG00000107752	ENSSSAG00000049688	ENSSSAG00000050560	szrd1 (ENSSSAG00000104426)	tmem82 (ENSSSAG00000050585)	ENSSSAG00000050602	ENSSSAG00000050681	HSPB7 (ENSSSAG00000051655)	ENSSSAG00000051670	ENSSSAG00000096954	ddost (ENSSSAG00000052087)
River trout	MODERN SPECIES	20	tpk2 (ENSSTUG00000029915)	tnnc1b (ENSSTUG00000029902)	si:dkey-6n6.1 (ENSSTUG00000029886)	bgna (ENSSTUG00000029875)	dedd (ENSSTUG00000029868)	ENSSTUG00000029864	ENSSTUG00000029849	atp2b3a (ENSSTUG00000029524)	nr1h5 (ENSSTUG00000029484)	slc66a1 (ENSSTUG00000029471)	trim33 (ENSSTUG00000026996)	bcas2 (ENSSTUG00000026929)	DENND2C (ENSSTUG00000026891)	ampd1 (ENSSTUG00000023265)	csde1 (ENSSTUG00000019251)	SIKE1 (ENSSTUG00000019109) ##22	ENSSTUG00000019100	TMCO4 (ENSSTUG00000019031)	vwa1 (ENSSTUG00000019018)	ENSSTUG00000019013	otud3 (ENSSTUG00000018995)	TMEM240 (ENSSTUG00000018984)	ATAD3A (ENSSTUG00000018854)	SDHB (ENSSTUG00000018813)	szrd1 (ENSSTUG00000018801)	ENSSTUG00000018794	tmem82 (ENSSTUG00000018783)	SPEN (ENSSTUG00000018751)	ENSSTUG00000018270	hspb7 (ENSSTUG00000046131)	ZBTB17 (ENSSTUG00000046075)
Oncorhynchus	ANCESTRAL SPECIES	20	ENSGT00390000016016.B	ENSGT00940000153541.B.k	ENSGT00940000164248.b.a.c	ENSGT00940000155311.C.d.c	ENSGT00390000008714.a.y	ENSGT00940000166720.c.b	ENSGT00950000183145.B.a.a.a.b.b.a.b	ENSGT00940000165254.c.b.c	ENSGT00940000166498.a	ENSGT00390000003344.f	ENSGT00940000156361.B.f	ENSGT00390000014494.xb	ENSGT00950000182931.B.a.b.j	ENSGT00950000183011.c.a.a.f	ENSGT00390000016950.ob	ENSGT00390000018003.a ##22	ENSGT00940000164988.f	ENSGT00390000001400	ENSGT00940000160734.d.d	ENSGT00390000016392.p	ENSGT00400000023987.d.d	ENSGT00730000111059.b	ENSGT00390000005532.l	ENSGT00500000045021.d.d	ENSGT00940000157087.a.b.r.b	ENSGT00940000165103.a.f	ENSGT00390000010674.b.f	ENSGT00940000159957.f	ENSGT00390000017294.h	ENSGT00390000015175.h	ENSGT00940000164482
Oncorhynchus_a	ANCESTRAL SPECIES	7	ENSGT00950000182945.b.a.a.a.b.b.d.a	ENSGT00390000016016.B	ENSGT00940000153541.B.k	ENSGT00940000164248.b.a.c	ENSGT00940000155311.C.d.c	ENSGT00390000008714.a.y	ENSGT00950000183145.B.a.a.a.b.b.a.b	ENSGT00940000165254.c.b.c	ENSGT00940000166498.a	ENSGT00390000003344.f	ENSGT00940000156361.B.f	ENSGT00390000014494.xb	ENSGT00950000182931.B.a.b.j	ENSGT00950000183011.c.a.a.f	ENSGT00390000016950.ob	ENSGT00390000018003.a ##22	ENSGT00940000164988.f	ENSGT00390000001400	ENSGT00940000160734.d.d	ENSGT00390000016392.p	ENSGT00400000023987.d.d	ENSGT00730000111059.b	ENSGT00390000005532.l	ENSGT00500000045021.d.d	ENSGT00940000157087.a.b.r.b	ENSGT00940000165103.a.f.a	ENSGT00940000165103.a.f.b	ENSGT00390000010674.b.f	ENSGT00940000159957.f	ENSGT00390000017294.h	ENSGT00390000015175.h
Chinook salmon	DUPLICATION
Chinook salmon	MODERN SPECIES	37	ENSOTSG00005043536	tpk2 (ENSOTSG00005043535)	tnnc1b (ENSOTSG00005043534)	si:dkey-6n6.1 (ENSOTSG00005043532)	bgna (ENSOTSG00005043524)	dedd (ENSOTSG00005043522)	ENSOTSG00005043516	atp2b3a (ENSOTSG00005043249)	nr1h5 (ENSOTSG00005043242)	slc66a1 (ENSOTSG00005043237)	trim33 (ENSOTSG00005042943)	bcas2 (ENSOTSG00005042938)	DENND2C (ENSOTSG00005042936)	ampd1 (ENSOTSG00005038526)	csde1 (ENSOTSG00005031225)	SIKE1 (ENSOTSG00005031191) ##22	ENSOTSG00005031187	TMCO4 (ENSOTSG00005031184)	vwa1 (ENSOTSG00005031181)	otud3 (ENSOTSG00005031179)	TMEM240 (ENSOTSG00005031178)	ATAD3A (ENSOTSG00005031116)	szrd1 (ENSOTSG00005031112)	tmem82 (ENSOTSG00005031109)	SPEN (ENSOTSG00005031106)	ENSOTSG00005029698	hspb7 (ENSOTSG00005029696)	ZBTB17 (ENSOTSG00005029689)	ddost (ENSOTSG00005029686)	plekhm2 (ENSOTSG00005028337)	ENSOTSG00005028216
Chinook salmon	MODERN SPECIES	7	ndufb11 (ENSOTSG00005041868)	ENSOTSG00005041869	tpk2 (ENSOTSG00005041870)	si:dkey-6n6.1 (ENSOTSG00005041871)	bgna (ENSOTSG00005041873)	dedd (ENSOTSG00005041874)	ENSOTSG00005041875	atp2b3a (ENSOTSG00005002099)	nr1h5 (ENSOTSG00005002219)	slc66a1 (ENSOTSG00005002220)	trim33 (ENSOTSG00005002265)	bcas2 (ENSOTSG00005005508)	DENND2C (ENSOTSG00005005510)	ampd1 (ENSOTSG00005005519)	csde1 (ENSOTSG00005008042)	SIKE1 (ENSOTSG00005008048) ##22	ENSOTSG00005008049	TMCO4 (ENSOTSG00005008050)	vwa1 (ENSOTSG00005008051)	otud3 (ENSOTSG00005008052)	TMEM240 (ENSOTSG00005008053)	ATAD3A (ENSOTSG00005008055)	szrd1 (ENSOTSG00005008056)	tmem82 (ENSOTSG00005008058)	SPEN (ENSOTSG00005008062)	ENSOTSG00005008081	ZBTB17 (ENSOTSG00005010255)	ddost (ENSOTSG00005010257)	plekhm2 (ENSOTSG00005010265)	ENSOTSG00005011432	ARHGEF19 (ENSOTSG00005011443)
Coho salmon	MODERN SPECIES	8	ENSOKIG00005023119	ENSOKIG00005023219	tpk2 (ENSOKIG00005023279)	si:dkey-6n6.1 (ENSOKIG00005023298)	bgna (ENSOKIG00005023311)	dedd (ENSOKIG00005023393)	ENSOKIG00005023421	atp2b3a (ENSOKIG00005023460)	nr1h5 (ENSOKIG00005023937)	slc66a1 (ENSOKIG00005023974)	trim33 (ENSOKIG00005024124)	bcas2 (ENSOKIG00005024913)	DENND2C (ENSOKIG00005024971)	ampd1 (ENSOKIG00005025384)	CSDE1 (ENSOKIG00005028925)	SIKE1 (ENSOKIG00005030031) ##22	ENSOKIG00005030049	ENSOKIG00005030087	vwa1 (ENSOKIG00005030211)	otud3 (ENSOKIG00005030224)	TMEM240 (ENSOKIG00005030252)	ATAD3A (ENSOKIG00005030311)	szrd1 (ENSOKIG00005030415)	ENSOKIG00005030430	SPEN (ENSOKIG00005030477)	ENSOKIG00005030709	ZBTB17 (ENSOKIG00005032414)	ddost (ENSOKIG00005032432)	plekhm2 (ENSOKIG00005032618)	ENSOKIG00005034994	ARHGEF19 (ENSOKIG00005035355)
Rainbow trout	MODERN SPECIES	30	tpk2 (ENSOMYG00000031104)	ENSOMYG00000031114	si:dkey-6n6.1 (ENSOMYG00000031124)	bgna (ENSOMYG00000031157)	dedd (ENSOMYG00000031198)	ugt5e1 (ENSOMYG00000064227)	ENSOMYG00000031207	ENSOMYG00000031339	nr1h5 (ENSOMYG00000031711)	slc66a1 (ENSOMYG00000031731)	trim33 (ENSOMYG00000032150)	bcas2 (ENSOMYG00000061830)	DENND2C (ENSOMYG00000039900)	ampd1 (ENSOMYG00000034377)	CSDE1 (ENSOMYG00000040030)	ENSOMYG00000040303 ##22	ENSOMYG00000040314	ENSOMYG00000040370	vwa1 (ENSOMYG00000040473)	otud3 (ENSOMYG00000040481)	ENSOMYG00000040487	ENSOMYG00000040535	szrd1 (ENSOMYG00000060141)	tmem82 (ENSOMYG00000040575)	ENSOMYG00000040642	ENSOMYG00000040821	ENSOMYG00000041732	ddost (ENSOMYG00000041762)	plekhm2 (ENSOMYG00000041848)	ENSOMYG00000042898	ENSOMYG00000042942
Huchen	MODERN SPECIES	37	ENSHHUG00000019020	tpk2 (ENSHHUG00000019213)	ENSHHUG00000019250	bgna (ENSHHUG00000019257)	dedd (ENSHHUG00000019264)	ENSHHUG00000019271	ENSHHUG00000019279	atp2b3a (ENSHHUG00000019305)	nr1h5 (ENSHHUG00000019636)	slc66a1 (ENSHHUG00000019646)	trim33 (ENSHHUG00000019655)	bcas2 (ENSHHUG00000019878)	DENND2C (ENSHHUG00000019892)	ampd1 (ENSHHUG00000019906)	csde1 (ENSHHUG00000020222)	SIKE1 (ENSHHUG00000021017) ##22	ENSHHUG00000021025	TMCO4 (ENSHHUG00000021040)	vwa1 (ENSHHUG00000021071)	otud3 (ENSHHUG00000021079)	TMEM240 (ENSHHUG00000021088)	ATAD3A (ENSHHUG00000021100)	SDHB (ENSHHUG00000021205)	szrd1 (ENSHHUG00000021370)	ENSHHUG00000021470	ENSHHUG00000021466	ENSHHUG00000021471	SPEN (ENSHHUG00000021478)	ENSHHUG00000021496	ZBTB17 (ENSHHUG00000021522)	ddost (ENSHHUG00000021529)
Northern pike	MODERN SPECIES	11	tpk2 (ENSELUG00000014181)	tnnc1b (ENSELUG00000014239)	si:dkey-6n6.1 (ENSELUG00000014312)	bgna (ENSELUG00000014324)	dedd (ENSELUG00000014388)	ugt5e1 (ENSELUG00000000522)	atp2b3a (ENSELUG00000000541)	nr1h5 (ENSELUG00000014805)	slc66a1 (ENSELUG00000014931)	trim33 (ENSELUG00000015119)	bcas2 (ENSELUG00000015179)	DENND2C (ENSELUG00000015207)	ampd1 (ENSELUG00000015271)	ENSELUG00000015283 ##15	csde1 (ENSELUG00000015507)	SIKE1 (ENSELUG00000000578) ##22	micos10 (ENSELUG00000015601)	ENSELUG00000015613	TMCO4 (ENSELUG00000015634)	ENSELUG00000031519	vwa1 (ENSELUG00000015669)	otud3 (ENSELUG00000015694)	TMEM240 (ENSELUG00000015718)	atp13a2 (ENSELUG00000015796)	szrd1 (ENSELUG00000031139)	tmem82 (ENSELUG00000015853)	ENSELUG00000015904	fam131c (ENSELUG00000000599)	clcnk (ENSELUG00000015988)	hspb7 (ENSELUG00000025070)	ZBTB17 (ENSELUG00000016077)
Otomorpha	ANCESTRAL SPECIES	26																ENSGT00390000018003.a ##22	ENSGT00940000168345	ENSGT01010000222287.A	ENSGT00390000001400	ENSGT00940000160734.d	ENSGT00390000016392	ENSGT00400000023987.d	ENSGT00390000013558.a.b	ENSGT00940000159714	ENSGT00390000005532.l	ENSGT00500000045021.d	ENSGT00940000157087.a.b	ENSGT00940000165103.a	ENSGT00950000183106.b	ENSGT00940000164106	ENSGT00390000010674.b
Clupeiformes	ANCESTRAL SPECIES	7	ENSGT00940000165182.c	ENSGT00940000161589	ENSGT00940000155218.A.d	ENSGT00940000157379	ENSGT00940000159853	ENSGT00940000159695	ENSGT00940000156010.db	ENSGT00390000011620.a.a.b.f	ENSGT00940000158073.a	ENSGT00940000167904	ENSGT00940000160902.c.b	ENSGT00390000018730.A.e	ENSGT00940000161930	ENSGT00390000002821	ENSGT00940000155532.`e	ENSGT00390000018003.a ##22	ENSGT00940000158954	ENSGT01030000234629.B	ENSGT00390000012992	ENSGT00940000156846	ENSGT00940000160409	ENSGT00950000182805.a.a.a.a.b	ENSGT00940000153615.a.a.a	ENSGT00940000160830	ENSGT00390000010057	ENSGT00940000157635	ENSGT00940000155360.A	ENSGT01090000260154	ENSGT00940000163056	ENSGT00940000158337	ENSGT00940000153876.A
Denticle herring	MODERN SPECIES	1	hes2.2 (ENSDCDG00000025002)	acot7 (ENSDCDG00000025020)	GPR153 (ENSDCDG00000025132)	her3 (ENSDCDG00000025135)	MTG2 (ENSDCDG00000025136)	SS18L1 (ENSDCDG00000025139)	ENSDCDG00000025143	lsm14b (ENSDCDG00000025151)	TAF4 (ENSDCDG00000025155)	CDH4 (ENSDCDG00000025404)	ENSDCDG00000028998	kcnk15 (ENSDCDG00000028999)	ogfr (ENSDCDG00000029000)	ENSDCDG00000029003	ENSDCDG00000029005	SIKE1 (ENSDCDG00000029006) ##22	slc25a33 (ENSDCDG00000029010)	spsb1 (ENSDCDG00000029014)	gpr157 (ENSDCDG00000029019)	slc2a5 (ENSDCDG00000029022)	CA6 (ENSDCDG00000029025)	eno1a (ENSDCDG00000029037)	RERE (ENSDCDG00000029107)	SAMD11 (ENSDCDG00000029126)	noc2l (ENSDCDG00000003267)	KLHL17 (ENSDCDG00000003896)	ENSDCDG00000003900	ENSDCDG00000003904	her9 (ENSDCDG00000003907)	agrn (ENSDCDG00000003928)	ptpn11b (ENSDCDG00000004093)
Atlantic herring	MODERN SPECIES	20	cbln4 (ENSCHAG00000000300)	ENSCHAG00000000280	ENSCHAG00000000260	irx7 (ENSCHAG00000000248)	ENSCHAG00000000236	PLEKHG5 (ENSCHAG00000000168)	ENSCHAG00000027719	ENSCHAG00000027718	CDH4 (ENSCHAG00000027691)	ENSCHAG00000027678	kcnk15 (ENSCHAG00000027677)	ogfr (ENSCHAG00000027676)	col9a3 (ENSCHAG00000027675)	ENSCHAG00000027674	DIDO1 (ENSCHAG00000027673)	SIKE1 (ENSCHAG00000027672) ##22	slc25a33 (ENSCHAG00000027669)	spsb1 (ENSCHAG00000027667)	gpr157 (ENSCHAG00000027665)	slc2a5 (ENSCHAG00000027663)	CA6 (ENSCHAG00000027660)	eno1a (ENSCHAG00000027659)	RERE (ENSCHAG00000027649)	SAMD11 (ENSCHAG00000027642)	noc2l (ENSCHAG00000027620)	KLHL17 (ENSCHAG00000027610)	ENSCHAG00000027607	ENSCHAG00000027606	her9 (ENSCHAG00000027605)	agrn (ENSCHAG00000027359)	ptpn11b (ENSCHAG00000026900)
Otophysi	ANCESTRAL SPECIES	111																ENSGT00390000018003.a ##22	ENSGT00940000168345	ENSGT01010000222287.A	ENSGT00390000001400	ENSGT00940000160734.d	ENSGT00390000016392	ENSGT00400000023987.d	ENSGT00390000013558.a.b	ENSGT00940000159714	ENSGT00390000005532.l	ENSGT00500000045021.d	ENSGT00940000157087.a.b	ENSGT00940000165103.a	ENSGT00950000183106.b	ENSGT00940000164106	ENSGT00390000010674.b
Characiphysae	ANCESTRAL SPECIES	48	ENSGT00950000182903.b.a.y.b	ENSGT00390000011058.a.c	ENSGT00940000155203.a	ENSGT00940000167132	ENSGT00860000133842.n	ENSGT00940000162344	ENSGT00520000055578.a.a.c	ENSGT00950000183032.A.b.b.b.a.b	ENSGT00940000156364.a.b	ENSGT00940000161936	ENSGT01070000253766.B.f.b	ENSGT00400000022086.b.a.b.d	ENSGT00390000013839.c.b	ENSGT00940000158762.f	ENSGT00950000182982.B.c.b	ENSGT00390000018003.a ##22	ENSGT00940000168269	ENSGT01010000222287.A	ENSGT00390000001400	ENSGT00940000160734.d	ENSGT00390000016392	ENSGT00400000023987.d	ENSGT00940000159714	ENSGT00390000005532.l	ENSGT00500000045021.d	ENSGT00940000157087.a.b	ENSGT00940000165103.a	ENSGT00950000183106.b	ENSGT00940000164106	ENSGT00390000010674.b	ENSGT00940000159957
Channel catfish	MODERN SPECIES	6	ENSIPUG00000022160	uts2a (ENSIPUG00000022143)	CAMTA1 (ENSIPUG00000022062)	dnajc11a (ENSIPUG00000022044)	asxl1 (ENSIPUG00000022022)	pcmtd2a (ENSIPUG00000022007)	MYT1 (ENSIPUG00000021964)	NPBWR1 (ENSIPUG00000021953)	OPRL1 (ENSIPUG00000021946)	xkr7a (ENSIPUG00000021938)	CABLES2 (ENSIPUG00000021909)	ADRM1 (ENSIPUG00000021877)	ENSIPUG00000021872	OSBPL2 (ENSIPUG00000021848)	ENSIPUG00000021841	SIKE1 (ENSIPUG00000021830) ##22	micos10 (ENSIPUG00000021810)	HTR6 (ENSIPUG00000021804)	tmco4 (ENSIPUG00000021789)	vwa1 (ENSIPUG00000021783)	Otud3 (ENSIPUG00000021768)	TMEM240 (ENSIPUG00000021756)	atp13a2 (ENSIPUG00000021712)	szrd1 (ENSIPUG00000021697)	tmem82 (ENSIPUG00000021678)	spen (ENSIPUG00000021668)	epha2 (ENSIPUG00000021606)	fam131c (ENSIPUG00000021595)	clcnka (ENSIPUG00000021581)	hspb7 (ENSIPUG00000021574)	Zbtb17 (ENSIPUG00000021538)
Characiphysae_b	ANCESTRAL SPECIES	35	ENSGT00950000182903.b.a.y.b	ENSGT00390000011058.a.c	ENSGT00940000155203.a	ENSGT00940000167132	ENSGT00860000133842.n	ENSGT00940000162344	ENSGT00520000055578.a.a.c	ENSGT00950000183032.A.b.b.b.a.b	ENSGT00940000156364.a.b	ENSGT00940000161936	ENSGT01070000253766.B.f.b	ENSGT00400000022086.b.a.b.d	ENSGT00390000013839.c.b	ENSGT00940000158762.f	ENSGT00950000182982.B.c.b	ENSGT00390000018003.a ##22	ENSGT00940000168269	ENSGT01010000222287.A	ENSGT00390000001400	ENSGT00940000160734.d	ENSGT00390000016392	ENSGT00400000023987.d	ENSGT00940000159714	ENSGT00390000005532.l	ENSGT00500000045021.d	ENSGT00940000157087.a.b	ENSGT00940000165103.a	ENSGT00950000183106.b	ENSGT00940000164106	ENSGT00390000010674.b	ENSGT00940000159957
Electric eel	MODERN SPECIES	223																SIKE1 (ENSEEEG00000014137) ##22	micos10 (ENSEEEG00000014140)	ENSEEEG00000014144	TMCO4 (ENSEEEG00000014159)	vwa1 (ENSEEEG00000014170)	otud3 (ENSEEEG00000014171)	TMEM240 (ENSEEEG00000014173)	atp13a2 (ENSEEEG00000014187)	szrd1 (ENSEEEG00000014339)	tmem82 (ENSEEEG00000014341)	ENSEEEG00000014342	ENSEEEG00000014346	ENSEEEG00000014350	fam131c (ENSEEEG00000014352)	clcnk (ENSEEEG00000014356)	hspb7 (ENSEEEG00000014360)
Characoidei	ANCESTRAL SPECIES	22	ENSGT00390000012802	ENSGT00390000001509.b	ENSGT00950000182903.b.a.y.b	ENSGT00390000011058.a.c	ENSGT00940000155203.a	ENSGT00940000167132	ENSGT00860000133842.n	ENSGT00520000055578.a.a.c	ENSGT00950000183032.A.b.b.b.a.b	ENSGT00940000156364.a.b	ENSGT00940000161936	ENSGT01070000253766.B.f.b	ENSGT00400000022086.b.a.b.d	ENSGT00940000158762.f	ENSGT00950000182982.B.c.b	ENSGT00390000018003.a ##22	ENSGT00940000168269	ENSGT01010000222287.A	ENSGT00390000001400	ENSGT00940000160734.d	ENSGT00390000016392	ENSGT00400000023987.d	ENSGT00940000159714	ENSGT00390000005532.l	ENSGT00940000157101.r	ENSGT00500000045021.d	ENSGT00940000157087.a.b	ENSGT00940000165103.a	ENSGT00950000183106.b	ENSGT00940000164106	ENSGT00390000010674.b
Red-bellied piranha	MODERN SPECIES	5	ccdc187 (ENSPNAG00000021670)	uts2a (ENSPNAG00000006189)	CAMTA1 (ENSPNAG00000021547)	ENSPNAG00000021486	dnajc11a (ENSPNAG00000021472)	asxl1 (ENSPNAG00000021381)	pcmtd2a (ENSPNAG00000021244)	MYT1 (ENSPNAG00000021217)	ENSPNAG00000007043	OPRL1 (ENSPNAG00000021088)	xkr7a (ENSPNAG00000003665)	CABLES2 (ENSPNAG00000021056)	ENSPNAG00000021035	ENSPNAG00000021012	ENSPNAG00000020987	SIKE1 (ENSPNAG00000020975) ##22	micos10 (ENSPNAG00000020961)	HTR6 (ENSPNAG00000020953)	ENSPNAG00000020930	vwa1 (ENSPNAG00000020919)	otud3 (ENSPNAG00000020911)	TMEM240 (ENSPNAG00000003662)	atp13a2 (ENSPNAG00000020889)	szrd1 (ENSPNAG00000020860)	sult1st5 (ENSPNAG00000020836)	tmem82 (ENSPNAG00000020823)	SPEN (ENSPNAG00000020795)	ENSPNAG00000020750	fam131c (ENSPNAG00000020692)	clcnk (ENSPNAG00000020668)	hspb7 (ENSPNAG00000020622)
Mexicana tetra	MODERN SPECIES	270													ENSAMXG00000012233	ENSAMXG00000012248	ENSAMXG00000031448	SIKE1 (ENSAMXG00000012292) ##22	micos10 (ENSAMXG00000031854)	HTR6 (ENSAMXG00000012315)	TMCO4 (ENSAMXG00000032129)	vwa1 (ENSAMXG00000012368)	otud3 (ENSAMXG00000012385)	TMEM240 (ENSAMXG00000012401)
Cyprinoidei	DUPLICATION
Cyprinoidei	ANCESTRAL SPECIES																	ENSGT00390000018003.a.k ##22	ENSGT00940000168345	ENSGT01010000222287.A	ENSGT00390000001400	ENSGT00940000160734.d	ENSGT00390000016392	ENSGT00390000005294.a	ENSGT00940000156872.c	ENSGT00940000159117	ENSGT00940000158250.d.b	ENSGT00940000159686	ENSGT00940000156230.p	ENSGT00940000159181	ENSGT00940000155384.a	ENSGT00940000156405	ENSGT00950000183051.a.b
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	3	ENSGT00940000159567.a.b.a	ENSGT00390000000358.z.c	ENSGT00950000182982.C.c.b.h	ENSGT01050000244838.D.a.b.e	ENSGT00940000157191.d.d	ENSGT01050000244939.a.a.b.a.b.c.a.a.a.a	ENSGT01050000244939.a.a.b.a.b.c.a.a.a.b.a.a	ENSGT00940000154667.b.a.c	ENSGT00940000159858.d	ENSGT00940000154044.a.a.q.a.a	ENSGT01090000260052.a.b.j.e.a.b	ENSGT01090000260052.a.b.j.e.b.a	ENSGT00950000182941.a.a.a.a.a	ENSGT00950000182985.b.a.l	ENSGT00390000004348.a	ENSGT00390000018003.a.k.a ##22	ENSGT00940000168345.b	ENSGT01010000222287.A.c.a	ENSGT00390000001400.g.a	ENSGT00940000160734.d.a	ENSGT00390000016392.i	ENSGT00390000005294.a.d	ENSGT00940000156872.c.b	ENSGT00940000159117.b	ENSGT00940000158250.d.b.b	ENSGT00940000159686.e	ENSGT00940000156230.p.b	ENSGT00940000159181.j	ENSGT00940000155384.a.b	ENSGT00940000156405.e	ENSGT00950000183051.a.b.c
Goldfish	MODERN SPECIES	15	SOGA3 (ENSCARG00000006021)	elovl4b (ENSCARG00000006010)	tent5ab (ENSCARG00000006001)	ENSCARG00000005889	ENSCARG00000005861	gpsm2l (ENSCARG00000005743)	rnf146 (ENSCARG00000005708)	ENSCARG00000005231	FYCO1 (ENSCARG00000005171)	XCR1 (ENSCARG00000005150)	XCR1 (ENSCARG00000005137)	ENSCARG00000005127	ENSCARG00000005105	ppp1r14c (ENSCARG00000005098)	iyd (ENSCARG00000005077)	SIKE1 (ENSCARG00000005069) ##22	ENSCARG00000005064	HTR6 (ENSCARG00000005058)	TMCO4 (ENSCARG00000004819)	vwa1 (ENSCARG00000004791)	otud3 (ENSCARG00000004779)	g0s2 (ENSCARG00000004775)	camk1gb (ENSCARG00000004753)	mical1 (ENSCARG00000004733)	src (ENSCARG00000004450)	kcng1 (ENSCARG00000004415)	NFATC2 (ENSCARG00000004333)	ATP9A (ENSCARG00000004044)	sall4 (ENSCARG00000003866)	TSHZ2 (ENSCARG00000003859)	znf217 (ENSCARG00000003844)
Cyprininae_a	ANCESTRAL SPECIES	5	ENSGT00390000000358.z.c	ENSGT00950000182982.C.c.b.h	ENSGT01050000244838.D.a.b.e	ENSGT00940000157191.d.d	ENSGT01050000244939.a.a.b.a.b.c.a.a.a.a	ENSGT01050000244939.a.a.b.a.b.c.a.a.a.b.b	ENSGT01050000244939.a.a.b.a.b.c.a.a.a.b.a.a	ENSGT00940000154667.b.a.c	ENSGT00940000159858.d	ENSGT00940000154044.a.a.q.a.a	ENSGT01090000260052.a.b.j.e.a.b	ENSGT01090000260052.a.b.j.e.b.a	ENSGT00950000182941.a.a.a.a.a	ENSGT00950000182985.b.a.l	ENSGT00390000004348.a	ENSGT00390000018003.a.k.a ##22	ENSGT00940000168345.a	ENSGT01010000222287.A.c.b	ENSGT00390000001400.h	ENSGT00940000168345.b	ENSGT00940000154484.A	ENSGT00390000001400.g.a	ENSGT00940000160734.d.a	ENSGT00390000016392.i	ENSGT00390000005294.a.c.a	ENSGT00940000156872.c.b	ENSGT00940000159117.b	ENSGT00940000158250.d.b.b	ENSGT00940000159686.e	ENSGT00940000156230.p.b	ENSGT00940000159181.j
Common carp reference	MODERN SPECIES	49	ENSCCRG00000066825	elovl4b (ENSCCRG00000065736)	tent5ab (ENSCCRG00000023270)	ENSCCRG00000016557	ENSCCRG00000016196	ENSCCRG00000016190	ENSCCRG00000076064	gpsm2l (ENSCCRG00000009614)	ENSCCRG00000041754	ENSCCRG00000002552	ENSCCRG00000071590	ENSCCRG00000080786	ENSCCRG00000055201	ppp1r14c (ENSCCRG00000055575)	iyd (ENSCCRG00000024500)	ENSCCRG00000024495 ##22	ENSCCRG00000078910	ENSCCRG00000048112	vwa1 (ENSCCRG00000019732)	otud3 (ENSCCRG00000048335)	g0s2 (ENSCCRG00000057634)	camk1gb (ENSCCRG00000048331)	mical1 (ENSCCRG00000048326)	src (ENSCCRG00000051450)	kcng1 (ENSCCRG00000057175)	NFATC2 (ENSCCRG00000030626)	ATP9A (ENSCCRG00000014167)	ENSCCRG00000014078	TSHZ2 (ENSCCRG00000075221)	znf217 (ENSCCRG00000017839)	zgc:112994 (ENSCCRG00000068599)
Golden-line barbel	MODERN SPECIES	655	SOGA3 (ENSSGRG00000021279)	ENSSGRG00000021280	elovl4b (ENSSGRG00000021281)	TGM1 (ENSSGRG00000021286)	TGM1 (ENSSGRG00000021294)	ENSSGRG00000021296	gpsm2l (ENSSGRG00000021329)	ENSSGRG00000021343	ENSSGRG00000021344	FYCO1 (ENSSGRG00000021351)	XCR1 (ENSSGRG00000021352)	XCR1 (ENSSGRG00000021354)	ENSSGRG00000021355	ppp1r14c (ENSSGRG00000021360)	ENSSGRG00000021365	SIKE1 (ENSSGRG00000021367) ##22	ENSSGRG00000021369	HTR6 (ENSSGRG00000021371)	ENSSGRG00000021383	vwa1 (ENSSGRG00000021384)	otud3 (ENSSGRG00000021385)	g0s2 (ENSSGRG00000021386)	ENSSGRG00000021388	mical1 (ENSSGRG00000021390)	ENSSGRG00000021523	src (ENSSGRG00000021524)	kcng1 (ENSSGRG00000021544)	NFATC2 (ENSSGRG00000021546)	ATP9A (ENSSGRG00000021650)	sall4 (ENSSGRG00000023837)
Cyprininae	ANCESTRAL SPECIES	427												ENSGT01090000260052.a.b.j.f.a.a	ENSGT00950000182941.a.a.a.a.b	ENSGT00950000182985.b.a.k	ENSGT00390000004348.b	ENSGT00390000018003.a.k.b ##22	ENSGT00940000168345.a	ENSGT01010000222287.A.c.b	ENSGT00390000001400.h	ENSGT00940000160734.d.b	ENSGT00390000016392.j	ENSGT00390000005294.a.c.a	ENSGT00940000156872.c.a	ENSGT01050000244806.b.a.a.b	ENSGT00940000159117.a	ENSGT00940000158250.d.b.a	ENSGT00940000159686.f	ENSGT00940000156230.p.a	ENSGT00940000159181.i	ENSGT00940000155384.a.a	ENSGT00940000156405.f
Cyprininae_a	ANCESTRAL SPECIES	647									ENSGT00940000159858.c	ENSGT00940000154044.a.a.q.a.b	ENSGT01090000260052.a.b.j.e.a.a	ENSGT01090000260052.a.b.j.f.a.a	ENSGT00950000182941.a.a.a.a.b	ENSGT00950000182985.b.a.k	ENSGT00390000004348.b	ENSGT00390000018003.a.k.b ##22
Golden-line barbel	MODERN SPECIES	127								GHRHR (ENSSGRG00000054041)	FYCO1 (ENSSGRG00000054049)	ENSSGRG00000054053	XCR1 (ENSSGRG00000054054)	ENSSGRG00000054055	XCR1 (ENSSGRG00000054056)	ppp1r14c (ENSSGRG00000054061)	iyd (ENSSGRG00000054062)	SIKE1 (ENSSGRG00000054064) ##22	ENSSGRG00000054065	ENSSGRG00000054067	ENSSGRG00000054068	vwa1 (ENSSGRG00000054069)	otud3 (ENSSGRG00000054070)	g0s2 (ENSSGRG00000054071)	g0s2 (ENSSGRG00000054073)	camk1gb (ENSSGRG00000054078)	ENSSGRG00000054113	src (ENSSGRG00000054141)	kcng1 (ENSSGRG00000054566)	NFATC2 (ENSSGRG00000054567)	ATP9A (ENSSGRG00000054577)	sall4 (ENSSGRG00000054582)	TSHZ2 (ENSSGRG00000054584)
Common carp reference	MODERN SPECIES	11	ENSCCRG00000067461	ENSCCRG00000017783	ENSCCRG00000074293	ENSCCRG00000081384	ENSCCRG00000062712	ENSCCRG00000058834	ENSCCRG00000067315	gpsm2l (ENSCCRG00000022665)	ENSCCRG00000020506	ENSCCRG00000020464	ENSCCRG00000080507	ENSCCRG00000020444	ENSCCRG00000082582	ppp1r14c (ENSCCRG00000071204)	iyd (ENSCCRG00000019758)	ENSCCRG00000019752 ##22	ENSCCRG00000068070	ENSCCRG00000019743	ENSCCRG00000019740	vwa1 (ENSCCRG00000057290)	otud3 (ENSCCRG00000078727)	g0s2 (ENSCCRG00000019729)	camk1gb (ENSCCRG00000019719)	ENSCCRG00000073601	mical1 (ENSCCRG00000019713)	src (ENSCCRG00000019707)	kcng1 (ENSCCRG00000058181)	NFATC2 (ENSCCRG00000029533)	ATP9A (ENSCCRG00000041058)	ZFP64 (ENSCCRG00000066753)	TSHZ2 (ENSCCRG00000017842)
Goldfish	DUPLICATION
Goldfish	MODERN SPECIES	42	ENSCARG00000060535	rnf146 (ENSCARG00000060516)	SOGA3 (ENSCARG00000060497)	elovl4b (ENSCARG00000060479)	tent5ab (ENSCARG00000060445)	ENSCARG00000060398	XCR1 (ENSCARG00000060381)	FYCO1 (ENSCARG00000060289)	ENSCARG00000059100	gpsm2l (ENSCARG00000059008)	TGM1 (ENSCARG00000058946)	XCR1 (ENSCARG00000058923)	XCR1 (ENSCARG00000058913)	ENSCARG00000058860	ppp1r14c (ENSCARG00000058829)	SIKE1 (ENSCARG00000058812) ##22	ENSCARG00000058780	HTR6 (ENSCARG00000058760)	vwa1 (ENSCARG00000058717)	otud3 (ENSCARG00000058695)	g0s2 (ENSCARG00000058676)	camk1gb (ENSCARG00000058426)	ENSCARG00000058407	mical1 (ENSCARG00000058346)	src (ENSCARG00000058166)	kcng1 (ENSCARG00000058128)	uts2a (ENSCARG00000058102)	ENSCARG00000058047	tnfrsf9a (ENSCARG00000058025)	DVL1 (ENSCARG00000057998)	mxra8b (ENSCARG00000057921)
Goldfish	MODERN SPECIES	42	ENSCARG00000058860	XCR1 (ENSCARG00000058913)	XCR1 (ENSCARG00000058923)	TGM1 (ENSCARG00000058946)	gpsm2l (ENSCARG00000059008)	ENSCARG00000059100	FYCO1 (ENSCARG00000060289)	XCR1 (ENSCARG00000060381)	ENSCARG00000060398	tent5ab (ENSCARG00000060445)	elovl4b (ENSCARG00000060479)	SOGA3 (ENSCARG00000060497)	rnf146 (ENSCARG00000060516)	ENSCARG00000060535	ppp1r14c (ENSCARG00000060562)	SIKE1 (ENSCARG00000060591) ##22	ENSCARG00000060617	HTR6 (ENSCARG00000060653)	vwa1 (ENSCARG00000060664)	otud3 (ENSCARG00000060689)	g0s2 (ENSCARG00000060694)	camk1gb (ENSCARG00000060710)	ENSCARG00000060756	mical1 (ENSCARG00000060795)	src (ENSCARG00000060896)	ENSCARG00000060949	cbln4 (ENSCARG00000060973)	ENSCARG00000061011	PFDN4 (ENSCARG00000061021)	zgc:112994 (ENSCARG00000061049)	znf217 (ENSCARG00000061062)
Zebrafish	MODERN SPECIES	15	ENSDARG00000075960	rnf146 (ENSDARG00000089981)	SOGA3 (ENSDARG00000075455)	elovl4b (ENSDARG00000027495)	tent5ab (ENSDARG00000054641)	ENSDARG00000112258	ENSDARG00000005913	ENSDARG00000101595	gpsm2l (ENSDARG00000102026)	ENSDARG00000095788	FYCO1 (ENSDARG00000104500)	XCR1 (ENSDARG00000054847)	ENSDARG00000104435	ppp1r14c (ENSDARG00000077341)	iyd (ENSDARG00000076056)	SIKE1 (ENSDARG00000102199) ##22	micos10 (ENSDARG00000101619)	HTR6 (ENSDARG00000016095)	TMCO4 (ENSDARG00000078924)	vwa1 (ENSDARG00000075468)	otud3 (ENSDARG00000022648)	g0s2 (ENSDARG00000078859)	camk1gb (ENSDARG00000008788)	mical1 (ENSDARG00000011809)	src (ENSDARG00000008107)	kcng1 (ENSDARG00000099038)	NFATC2 (ENSDARG00000100927)	ATP9A (ENSDARG00000115869)	sall4 (ENSDARG00000044485)	ZFP64 (ENSDARG00000061147)	TSHZ2 (ENSDARG00000079201)
Cyprinoidei	ANCESTRAL SPECIES																	ENSGT00390000018003.a.l ##22
Cyprininae	ANCESTRAL SPECIES																	ENSGT00390000018003.a.l ##22
Goldfish	MODERN SPECIES	33	ECHDC3 (ENSCARG00000013177)	fbxo7 (ENSCARG00000013170)	xpot (ENSCARG00000013010)	pthlha (ENSCARG00000012983) #36	rpl18a (ENSCARG00000012950)	dusp16 (ENSCARG00000012942)	crebl2 (ENSCARG00000012936)	tbk1 (ENSCARG00000012532)	eps8a (ENSCARG00000011154)	rpap3 (ENSCARG00000011086)	atp23 (ENSCARG00000011063)	lrig3 (ENSCARG00000011000)	ENSCARG00000010513	naga (ENSCARG00000010483)	ENSCARG00000010438	ENSCARG00000010417 ##22	TM7SF3 (ENSCARG00000010311) #24	med21 (ENSCARG00000010280) #25	PMPCB (ENSCARG00000009637)	dnajc2 (ENSCARG00000009510)	nudt4b (ENSCARG00000009484)	ENSCARG00000009461	pwp1 (ENSCARG00000009387)	ANO6 (ENSCARG00000009246)	ENSCARG00000009222	ENSCARG00000009218	GRM8 (ENSCARG00000008373)	znf800b (ENSCARG00000008321)	ENSCARG00000008316	SYPL1 (ENSCARG00000008310)	NAMPT (ENSCARG00000007771)
Cyclostomata	ANCESTRAL SPECIES																	ENSGT00390000018003.a ##22
Lamprey	MODERN SPECIES	733																SIKE1 (ENSPMAG00000007337) ##22	ENSPMAG00000007345	ptrhd1 (ENSPMAG00000007352)	ENSPMAG00000007356	CYTH2 (ENSPMAG00000007357)	rhbdf1a (ENSPMAG00000007395)
Hagfish	MODERN SPECIES	506													c2cd5 (ENSEBUG00000000792)	ENSEBUG00000016947	KCNA4 (ENSEBUG00000009486)	ENSEBUG00000009042 ##22	ENSEBUG00000004692	ENSEBUG00000003735	ENSEBUG00000013968	ENSEBUG00000010251	tspo (ENSEBUG00000001950)	ENSEBUG00000004049	ENSEBUG00000004217	ENSEBUG00000012540	ENSEBUG00000005139	ENSEBUG00000003534	ENSEBUG00000003886	ENSEBUG00000009131	ENSEBUG00000003854	ENSEBUG00000003493	ENSEBUG00000012456