Euteleostomi	ANCESTRAL SPECIES	49	ENSGT00390000010777	ENSGT00390000014084	ENSGT01030000234578.B.a	ENSGT00390000006747	ENSGT00950000183117.a.a	ENSGT00940000158254	ENSGT00940000155067.b	ENSGT00940000155067.a	ENSGT00940000155118	ENSGT00390000016813	ENSGT00940000155166.A	ENSGT00940000158600	ENSGT00940000159389	ENSGT00940000158037	ENSGT00940000158187	ENSGT00390000018003.b #22	ENSGT00390000008702 #23	ENSGT00390000014557 #24	ENSGT00940000153544.b #27	ENSGT00940000160423 #28	ENSGT00940000158677	ENSGT00940000166645	ENSGT00940000158899	ENSGT00390000005178 #31	ENSGT00940000153962.b	ENSGT00530000063825.A.c	ENSGT00950000183132.A	ENSGT01050000244879.b.a.b.a	ENSGT00390000014700.a	ENSGT00940000165765	ENSGT00390000013899.a.a
Sarcopterygii	ANCESTRAL SPECIES	12																ENSGT00390000018003.b #22	ENSGT00390000008702 #23	ENSGT00390000014557 #24	ENSGT00940000153544.b #27	ENSGT00940000160423 #28	ENSGT00940000158677	ENSGT00940000166645	ENSGT00940000158899	ENSGT00390000005178 #31	ENSGT00940000153962.b	ENSGT00530000063825.A.c	ENSGT00950000183132.A	ENSGT01050000244879.b.a.b.a	ENSGT00390000014700.a	ENSGT00940000165765	ENSGT00390000013899.a.a
Tetrapoda	ANCESTRAL SPECIES	22	ENSGT00940000163137	ENSGT01030000234535.D	ENSGT00390000000212	ENSGT00950000182939.b.a.b	ENSGT00940000156122	ENSGT00390000009532.A.d.a	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00910000144343	ENSGT00950000182839.B.a.a	ENSGT00940000161014	ENSGT00390000007747 #18	ENSGT00940000156039 #19	ENSGT00390000002793 #20	ENSGT00390000018003.b #22	ENSGT00390000008702 #23	ENSGT00390000014557 #24	ENSGT00940000153544.b #27	ENSGT00940000160423 #28	ENSGT00940000158677	ENSGT00940000166645	ENSGT00940000158899	ENSGT00390000005178 #31	ENSGT00940000153962.b	ENSGT00530000063825.A.c	ENSGT00510000047981.c	ENSGT00940000158466	ENSGT00950000182973.a.c.b	ENSGT00940000156720	ENSGT00390000013715
Amniota	ANCESTRAL SPECIES	49	ENSGT00390000000212	ENSGT00950000182939.b.a.b	ENSGT00940000156122	ENSGT00390000009532.A.d.a	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182839.B.a.a	ENSGT00940000161014	ENSGT00390000007747 #18	ENSGT00940000156039 #19	ENSGT00940000167397.b	ENSGT00390000002793 #20	ENSGT00390000018003.b #22	ENSGT00390000008702 #23	ENSGT00390000014557 #24	ENSGT00940000153544.b #27	ENSGT00940000160423 #28	ENSGT00940000169031 #26	ENSGT01050000244951.a.a #30	ENSGT00390000005178 #31
Mammalia	ANCESTRAL SPECIES	70	ENSGT00950000182939.b.a.b	ENSGT00940000156122	ENSGT00390000009532.A.d.a	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182839.B.a.a	ENSGT00940000161014	ENSGT00390000007747 #18	ENSGT00940000156039 #19	ENSGT00940000167397.b	ENSGT00390000002793 #20	ENSGT00970000193562	ENSGT00390000018003.b #22	ENSGT00390000008702 #23	ENSGT00390000014557 #24	ENSGT00940000153544.b #27	ENSGT00940000160423 #28	ENSGT00940000169031 #26	ENSGT01050000244951.a.a #30	ENSGT00390000005178 #31
Theria	ANCESTRAL SPECIES	2	ENSGT00390000000212	ENSGT00950000182939.b.a.b	ENSGT00940000156122	ENSGT00390000009532.A.d.a	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182839.B.a.a	ENSGT00940000161014	ENSGT00390000007747 #18	ENSGT00940000156039 #19	ENSGT00940000167397.b	ENSGT00390000002793 #20	ENSGT00390000018003.b #22	ENSGT00970000193562	ENSGT00390000008702 #23	ENSGT00390000014557 #24	ENSGT00940000153544.b #27	ENSGT00940000160423 #28	ENSGT00940000169031 #26	ENSGT00940000153380.A #29	ENSGT00390000018322 #25	ENSGT01050000244951.a.a #30	ENSGT00390000005178 #31	ENSGT00390000003443 #32	ENSGT00940000153377.C #33	ENSGT00940000160124 #34	ENSGT00390000004933	ENSGT00390000015899
Eutheria	ANCESTRAL SPECIES	1	ENSGT00390000000212	ENSGT00950000182939.b.a.b	ENSGT00940000156122	ENSGT00390000009532.A.d.a	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182839.B.a.a	ENSGT00940000161014	ENSGT00390000007747 #18	ENSGT00940000156039 #19	ENSGT00940000167397.b	ENSGT00390000002793 #20	ENSGT00390000018003.b #22	ENSGT00970000193562	ENSGT00390000008702 #23	ENSGT00390000014557 #24	ENSGT00940000153544.b #27	ENSGT00940000160423 #28	ENSGT00940000153380.A #29	ENSGT00390000018322 #25	ENSGT01050000244951.a.a #30	ENSGT00390000005178 #31	ENSGT00390000003443 #32	ENSGT00940000153377.C #33	ENSGT00940000160124 #34	ENSGT00390000004933	ENSGT00390000015899	ENSGT00390000006367.c
Boreoeutheria	ANCESTRAL SPECIES	6	ENSGT00390000000212	ENSGT00950000182939.b.a.b	ENSGT00940000156122	ENSGT00390000009532.A.d.a	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182839.B.a.a	ENSGT00940000161014	ENSGT00390000007747 #18	ENSGT00940000156039 #19	ENSGT00940000167397.b	ENSGT00390000002793 #20	ENSGT00390000018003.b #22	ENSGT00970000193562	ENSGT00390000008702 #23	ENSGT00390000014557 #24	ENSGT00940000153544.b #27	ENSGT00940000160423 #28	ENSGT00940000153380.A #29	ENSGT00390000018322 #25	ENSGT01050000244951.a.a #30	ENSGT00390000005178 #31	ENSGT00390000003443 #32	ENSGT00940000153377.C #33	ENSGT00940000160124 #34	ENSGT00390000004933	ENSGT00390000015899	ENSGT00390000006367.c
Euarchontoglires	ANCESTRAL SPECIES	6	ENSGT01030000234535.D	ENSGT00390000000212	ENSGT00950000182939.b.a.b	ENSGT00940000156122	ENSGT00390000009532.A.d.a	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182839.B.a.a	ENSGT00940000161014	ENSGT00390000007747 #18	ENSGT00940000156039 #19	ENSGT00390000002793 #20	ENSGT00390000018003.b #22	ENSGT00970000193562	ENSGT00390000008702 #23	ENSGT00390000014557 #24	ENSGT00940000153544.b #27	ENSGT00940000160423 #28	ENSGT00940000153380.A #29	ENSGT00390000018322 #25	ENSGT01050000244951.a.a #30	ENSGT00390000005178 #31	ENSGT00390000003443 #32	ENSGT00940000153377.C #33	ENSGT00940000160124 #34	ENSGT00390000004933	ENSGT00390000015899	ENSGT00390000006367.c
Primates	ANCESTRAL SPECIES	6	ENSGT00390000000212	ENSGT00950000182939.b.a.b	ENSGT00940000156122	ENSGT00390000009532.A.d.a	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182839.B.a.a	ENSGT00940000161014	ENSGT00390000007747 #18	ENSGT00940000156039 #19	ENSGT00390000002793 #20	ENSGT00970000193562	ENSGT00390000018003.b #22	ENSGT00390000008702 #23	ENSGT00390000014557 #24	ENSGT00940000153544.b #27	ENSGT00940000160423 #28	ENSGT00940000153380.A #29	ENSGT00390000018322 #25	ENSGT01050000244951.a.a #30	ENSGT00390000005178 #31	ENSGT00390000003443 #32	ENSGT00940000153377.C #33	ENSGT00940000160124 #34	ENSGT00390000004933	ENSGT00390000015899	ENSGT00390000006367.c	ENSGT00530000063113.A
Haplorrhini	ANCESTRAL SPECIES	3	ENSGT01030000234535.D	ENSGT00390000000212	ENSGT00950000182939.b.a.b	ENSGT00940000156122	ENSGT00390000009532.A.d.a	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182839.B.a.a	ENSGT00940000161014	ENSGT00390000007747 #18	ENSGT00940000156039 #19	ENSGT00390000002793 #20	ENSGT00390000018003.b #22	ENSGT00970000193562	ENSGT00390000008702 #23	ENSGT00390000014557 #24	ENSGT00940000153544.b #27	ENSGT00940000160423 #28	ENSGT00940000153380.A #29	ENSGT00390000018322 #25	ENSGT01050000244951.a.a #30	ENSGT00390000005178 #31	ENSGT00390000003443 #32	ENSGT00940000153377.C #33	ENSGT00940000160124 #34	ENSGT00390000004933	ENSGT00390000015899	ENSGT00390000006367.c
Simiiformes	ANCESTRAL SPECIES	4	ENSGT00390000000212	ENSGT00950000182939.b.a.b	ENSGT00940000156122	ENSGT00390000009532.A.d.a	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182839.B.a.a	ENSGT00940000161014	ENSGT00390000007747 #18	ENSGT00910000147260 #17	ENSGT00940000156039 #19	ENSGT00390000002793 #20	ENSGT00390000018003.b #22	ENSGT00970000193562	ENSGT00390000008702 #23	ENSGT00390000014557 #24	ENSGT00940000153544.b #27	ENSGT00940000160423 #28	ENSGT01100000266953	ENSGT00940000153380.A #29	ENSGT00390000018322 #25	ENSGT01050000244951.a.a #30	ENSGT00390000005178 #31	ENSGT00390000003443 #32	ENSGT00940000153377.C #33	ENSGT00940000160124 #34	ENSGT00390000004933	ENSGT00390000015899
Catarrhini	ANCESTRAL SPECIES	4	ENSGT00500000044955.j.b	ENSGT00390000009532.A.d.a	ENSGT00560000078473	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810.e	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182839.B.a.a	ENSGT00940000161014	ENSGT00390000007747 #18	ENSGT00910000147260 #17	ENSGT00940000156039 #19	ENSGT00390000002793 #20	ENSGT00970000193562	ENSGT00390000018003.b #22	ENSGT00390000008702 #23	ENSGT00390000014557 #24	ENSGT00390000018322 #25	ENSGT00940000153544.b #27	ENSGT00940000160423 #28	ENSGT01100000266953	ENSGT00940000153380.A #29	ENSGT01050000244951.a.a #30	ENSGT00390000005178 #31	ENSGT00390000003443 #32	ENSGT00940000153377.C #33	ENSGT00940000160124 #34	ENSGT00390000004933	ENSGT00390000015899	ENSGT00390000006367.c
Cercopithecidae	DUPLICATION
Cercopithecidae	ANCESTRAL SPECIES	3	ENSGT00940000156122.g	ENSGT00500000044955.j.b	ENSGT00390000009532.A.d.a	ENSGT00560000078473	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810.e	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182839.B.a.a	ENSGT00940000161014	ENSGT00390000007747 #18	ENSGT00910000147260 #17	ENSGT00940000156039 #19	ENSGT00390000002793 #20	ENSGT00390000018003.b.s #22	ENSGT01100000263940 #21	ENSGT00390000008702 #23	ENSGT00390000014557 #24	ENSGT00390000018322 #25	ENSGT00940000153544.b #27	ENSGT00940000160423 #28	ENSGT01100000266953	ENSGT00940000153380.A #29	ENSGT01050000244951.a.a #30	ENSGT00390000005178 #31	ENSGT00390000003443 #32	ENSGT00940000153377.C #33	ENSGT00940000160124 #34	ENSGT00390000004933	ENSGT00390000015899
Cercopithecinae	ANCESTRAL SPECIES	7	ENSGT00940000156122.g	ENSGT00500000044955.j.b	ENSGT00390000009532.A.d.a	ENSGT00560000078473	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810.e	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182839.B.a.a	ENSGT00940000161014	ENSGT00390000007747 #18	ENSGT00910000147260 #17	ENSGT00940000156039 #19	ENSGT00390000002793 #20	ENSGT00390000018003.b.s #22	ENSGT01100000263940 #21	ENSGT00390000008702 #23	ENSGT00390000014557 #24	ENSGT00390000018322 #25	ENSGT00940000153544.b #27	ENSGT00940000160423 #28	ENSGT01100000266953	ENSGT00940000153380.A #29	ENSGT01050000244951.a.a #30	ENSGT00390000005178 #31	ENSGT00390000003443 #32	ENSGT00940000153377.C #33	ENSGT00940000160124 #34	ENSGT00390000004933	ENSGT00390000015899
Cercopithecinae_a	ANCESTRAL SPECIES	7	ENSGT00950000182939.b.a.b	ENSGT00940000156122.g	ENSGT00500000044955.j.b	ENSGT00390000009532.A.d.a	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810.e	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182839.B.a.a	ENSGT00940000161014	ENSGT00390000007747 #18	ENSGT00910000147260 #17	ENSGT00940000156039 #19	ENSGT00390000002793 #20	ENSGT00390000018003.b.s #22	ENSGT01100000263940 #21	ENSGT00390000008702 #23	ENSGT00390000014557 #24	ENSGT00390000018322 #25	ENSGT00940000153544.b #27	ENSGT00940000160423 #28	ENSGT01100000266953	ENSGT00940000153380.A #29	ENSGT01050000244951.a.a #30	ENSGT00390000005178 #31	ENSGT00390000003443 #32	ENSGT00940000153377.C #33	ENSGT00940000160124 #34	ENSGT00390000004933	ENSGT00390000015899
Cercopithecinae_b	ANCESTRAL SPECIES	2	ENSGT00940000156122.g	ENSGT00500000044955.j.b	ENSGT00390000009532.A.d.a	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810.e	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182839.B.a.a	ENSGT00940000161014	ENSGT00390000007747 #18	ENSGT00910000147260 #17	ENSGT00940000156039 #19	ENSGT00390000002793 #20	ENSGT01100000263940 #21	ENSGT00390000018003.b.s #22	ENSGT00390000008702 #23	ENSGT00390000014557 #24	ENSGT00390000018322 #25	ENSGT00940000169031 #26	ENSGT00940000153544.b.h #27	ENSGT00940000160423 #28	ENSGT00940000153380.A #29	ENSGT01050000244951.a.a #30	ENSGT00390000005178 #31	ENSGT00390000003443 #32	ENSGT00940000153377.C #33	ENSGT00940000160124 #34	ENSGT00390000004933	ENSGT00390000015899	ENSGT00390000006367.c
Cercopithecinae_d	ANCESTRAL SPECIES	55	ENSGT00940000156122.g	ENSGT00500000044955.j.b	ENSGT00390000009532.A.d.a	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810.e	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182839.B.a.a	ENSGT00940000161014	ENSGT00390000007747 #18	ENSGT00910000147260 #17	ENSGT00940000156039 #19	ENSGT00390000002793 #20	ENSGT01100000263940 #21	ENSGT00390000018003.b.s #22	ENSGT00390000008702 #23	ENSGT00390000014557 #24	ENSGT00390000018322 #25	ENSGT00940000169031 #26	ENSGT00940000153544.b.h #27	ENSGT00940000160423 #28	ENSGT00940000153380.A #29	ENSGT01050000244951.a.a #30	ENSGT00390000005178 #31	ENSGT00390000003443 #32	ENSGT00940000153377.C #33	ENSGT00940000160124 #34	ENSGT00390000004933	ENSGT00390000015899	ENSGT00550000074784.a.a
Drill	MODERN SPECIES	1416											ENSMLEG00000031591 #17	SSPN (ENSMLEG00000034537) #18	ITPR2 (ENSMLEG00000025719) #19	INTS13 (ENSMLEG00000043300) #20	ENSMLEG00000027774 #21	FGFR1OP2 (ENSMLEG00000036726) #22	TM7SF3 (ENSMLEG00000032625) #23	MED21 (ENSMLEG00000032094) #24	C12orf71 (ENSMLEG00000032840) #25	ENSMLEG00000042321 #26	STK38L (ENSMLEG00000025232) #27	BMAL2 (ENSMLEG00000043623) #28	SMCO2 (ENSMLEG00000025872) #29	PPFIBP1 (ENSMLEG00000037770) #30	REP15 (ENSMLEG00000016380) #31	MRPS35 (ENSMLEG00000014861) #32	MANSC4 (ENSMLEG00000036910) #33	KLHL42 (ENSMLEG00000037264) #34
Sooty mangabey	MODERN SPECIES	102									RASSF8 (ENSCATG00000034380)	BHLHE41 (ENSCATG00000032763)	SSPN (ENSCATG00000030040) #18	ENSCATG00000030803 #17	ENSCATG00000039629	ITPR2 (ENSCATG00000037798) #19	INTS13 (ENSCATG00000034727) #20	FGFR1OP2 (ENSCATG00000044835) #22	ENSCATG00000016400 #21	TM7SF3 (ENSCATG00000035220) #23	MED21 (ENSCATG00000040715) #24	C12orf71 (ENSCATG00000015267) #25	ENSCATG00000032479 #30	STK38L (ENSCATG00000040090) #27	BMAL2 (ENSCATG00000012766) #28	SMCO2 (ENSCATG00000009890) #29	PPFIBP1 (ENSCATG00000032505) #30	REP15 (ENSCATG00000019197) #31	MRPS35 (ENSCATG00000019666) #32	MANSC4 (ENSCATG00000032050) #33	KLHL42 (ENSCATG00000032112) #34	PTHLH (ENSCATG00000035947)	CCDC91 (ENSCATG00000045038)
Olive baboon	MODERN SPECIES	19	ENSPANG00000042970	ENSPANG00000049022	BCAT1 (ENSPANG00000013681)	ENSPANG00000018182	DNAI7 (ENSPANG00000003393)	ETFRF1 (ENSPANG00000044084)	ENSPANG00000013197	ENSPANG00000042041	ENSPANG00000043398	LMNTD1 (ENSPANG00000024425)	RASSF8 (ENSPANG00000012636)	BHLHE41 (ENSPANG00000038795)	SSPN (ENSPANG00000004581) #18	ITPR2 (ENSPANG00000013066) #19	INTS13 (ENSPANG00000001087) #20	FGFR1OP2 (ENSPANG00000001088) #22	TM7SF3 (ENSPANG00000007817) #23	MED21 (ENSPANG00000013655) #24	ENSPANG00000039716 ##27	ENSPANG00000041008 #26	C12orf71 (ENSPANG00000001153) #25	STK38L (ENSPANG00000001154) #27	BMAL2 (ENSPANG00000004474) #28	PPFIBP1 (ENSPANG00000012635) #30	REP15 (ENSPANG00000014187) #31	MRPS35 (ENSPANG00000004580) #32	MANSC4 (ENSPANG00000021216) #33	KLHL42 (ENSPANG00000003392) #34	PTHLH (ENSPANG00000013654)	CCDC91 (ENSPANG00000013785)	ENSPANG00000039812
Macaca	ANCESTRAL SPECIES	6	ENSGT00950000182939.b.a.b	ENSGT00940000156122.g	ENSGT00390000009532.A.d.a	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810.e	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182839.B.a.a	ENSGT00940000161014	ENSGT00390000007747 #18	ENSGT00910000147260 #17	ENSGT00940000155037.z	ENSGT00940000156039 #19	ENSGT00390000002793 #20	ENSGT00390000018003.b.s #22	ENSGT01100000263940 #21	ENSGT00390000008702 #23	ENSGT00390000014557 #24	ENSGT00390000018322 #25	ENSGT00940000153544.b #27	ENSGT00940000160423 #28	ENSGT01100000266953	ENSGT00940000153380.A #29	ENSGT01050000244951.a.a #30	ENSGT00390000005178 #31	ENSGT00390000003443 #32	ENSGT00940000153377.C #33	ENSGT00940000160124 #34	ENSGT00390000004933	ENSGT00390000015899
Pig-tailed macaque	MODERN SPECIES	187	BCAT1 (ENSMNEG00000041910)	ENSMNEG00000028506	ENSMNEG00000041822	DNAI7 (ENSMNEG00000043789)	ETFRF1 (ENSMNEG00000000006)	KRAS (ENSMNEG00000045179)	LMNTD1 (ENSMNEG00000039772)	RASSF8 (ENSMNEG00000031029)	BHLHE41 (ENSMNEG00000037151)	SSPN (ENSMNEG00000029357) #18	ENSMNEG00000030540 #17	ENSMNEG00000038447	ITPR2 (ENSMNEG00000022353) #19	ENSMNEG00000029346	INTS13 (ENSMNEG00000045424) #20	FGFR1OP2 (ENSMNEG00000029096) #22	ENSMNEG00000024553 #21	TM7SF3 (ENSMNEG00000037627) #23	MED21 (ENSMNEG00000039549) #24	C12orf71 (ENSMNEG00000028919) #25	STK38L (ENSMNEG00000031026) #27	BMAL2 (ENSMNEG00000037695) #28	ENSMNEG00000041324	SMCO2 (ENSMNEG00000042236) #29	PPFIBP1 (ENSMNEG00000030950) #30	MRPS35 (ENSMNEG00000043409) #32	MANSC4 (ENSMNEG00000035484) #33	KLHL42 (ENSMNEG00000042886) #34	PTHLH (ENSMNEG00000038925)	CCDC91 (ENSMNEG00000027722)	ENSMNEG00000044668
Macaca_a	ANCESTRAL SPECIES	6	ENSGT00950000182939.b.a.b	ENSGT00940000156122.g	ENSGT00390000009532.A.d.a	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810.e	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182839.B.a.a	ENSGT00940000161014	ENSGT00390000007747 #18	ENSGT00910000147260 #17	ENSGT01100000263493.a.b.a.a.a.b.a.a.b.b.a.a.a.a.b.a	ENSGT00940000156039 #19	ENSGT00390000002793 #20	ENSGT00390000018003.b.s #22	ENSGT00390000008702 #23	ENSGT00390000014557 #24	ENSGT00390000018322 #25	ENSGT00940000153544.b #27	ENSGT00940000160423 #28	ENSGT00940000153380.A #29	ENSGT01050000244951.a.a #30	ENSGT00390000005178 #31	ENSGT00390000003443.k #32	ENSGT00940000153377.C #33	ENSGT00940000160124 #34	ENSGT00390000004933	ENSGT00390000015899	ENSGT00390000006367.c	ENSGT00530000063113.A
Rhesus	MODERN SPECIES	2	BCAT1 (ENSMMUG00000012223)	ENSMMUG00000065144	IRAG2 (ENSMMUG00000015374)	ENSMMUG00000038348	DNAI7 (ENSMMUG00000015377)	ETFRF1 (ENSMMUG00000042111)	KRAS (ENSMMUG00000015381)	ENSMMUG00000059361	LMNTD1 (ENSMMUG00000009601)	RASSF8 (ENSMMUG00000018385)	BHLHE41 (ENSMMUG00000039562)	SSPN (ENSMMUG00000018630) #18	ENSMMUG00000050627	ITPR2 (ENSMMUG00000023128) #19	INTS13 (ENSMMUG00000006466) #20	FGFR1OP2 (ENSMMUG00000006468) #22	TM7SF3 (ENSMMUG00000003217) #23	MED21 (ENSMMUG00000003218) #24	C11H12orf71 (ENSMMUG00000004106) #25	STK38L (ENSMMUG00000023248) #27	ARNTL2 (ENSMMUG00000023249) #28	SMCO2 (ENSMMUG00000021736) #29	PPFIBP1 (ENSMMUG00000021737) #30	REP15 (ENSMMUG00000053271) #31	MRPS35 (ENSMMUG00000063176) #32	KLHL42 (ENSMMUG00000021742) #34	PTHLH (ENSMMUG00000010531)	CCDC91 (ENSMMUG00000011802)	ENSMMUG00000060392	FAR2 (ENSMMUG00000015810)	ERGIC2 (ENSMMUG00000015811)
Crab-eating macaque	MODERN SPECIES	2	BCAT1 (ENSMFAG00000003944)	ENSMFAG00000041885	DNAI7 (ENSMFAG00000032055)	ETFRF1 (ENSMFAG00000041072)	ENSMFAG00000056709	KRAS (ENSMFAG00000047411)	LMNTD1 (ENSMFAG00000030035)	RASSF8 (ENSMFAG00000001620)	BHLHE41 (ENSMFAG00000051510)	SSPN (ENSMFAG00000045387) #18	ENSMFAG00000055781 #17	ENSMFAG00000056007	ITPR2 (ENSMFAG00000035688) #19	ENSMFAG00000049957	INTS13 (ENSMFAG00000041404) #20	FGFR1OP2 (ENSMFAG00000043095) #22	TM7SF3 (ENSMFAG00000041364) #23	MED21 (ENSMFAG00000041759) #24	C12orf71 (ENSMFAG00000039958) #25	STK38L (ENSMFAG00000030945) #27	BMAL2 (ENSMFAG00000002262) #28	SMCO2 (ENSMFAG00000003560) #29	PPFIBP1 (ENSMFAG00000036882) #30	REP15 (ENSMFAG00000062839) #31	ENSMFAG00000030289 #32	MANSC4 (ENSMFAG00000034623) #33	KLHL42 (ENSMFAG00000037607) #34	PTHLH (ENSMFAG00000003152)	CCDC91 (ENSMFAG00000045497)	FAR2 (ENSMFAG00000032325)	ERGIC2 (ENSMFAG00000041736)
Vervet Monkey	MODERN SPECIES	2	SOX5 (ENSCSAG00000007872)	BCAT1 (ENSCSAG00000007862)	ENSCSAG00000019243	ENSCSAG00000007850	IRAG2 (ENSCSAG00000007840)	ENSCSAG00000007824	DNAI7 (ENSCSAG00000007796)	ETFRF1 (ENSCSAG00000007787)	KRAS (ENSCSAG00000007777)	LMNTD1 (ENSCSAG00000007754)	RASSF8 (ENSCSAG00000007736)	BHLHE41 (ENSCSAG00000007728)	SSPN (ENSCSAG00000007717) #18	ITPR2 (ENSCSAG00000007690) #19	INTS13 (ENSCSAG00000007677) #20	FGFR1OP2 (ENSCSAG00000007670) #22	TM7SF3 (ENSCSAG00000007661) #23	MED21 (ENSCSAG00000007653) #24	C12orf71 (ENSCSAG00000007649) #25	STK38L (ENSCSAG00000007644) #27	BMAL2 (ENSCSAG00000007636) #28	SMCO2 (ENSCSAG00000007630) #29	PPFIBP1 (ENSCSAG00000007602) #30	REP15 (ENSCSAG00000019244) #31	MRPS35 (ENSCSAG00000007584) #32	MANSC4 (ENSCSAG00000007579) #33	KLHL42 (ENSCSAG00000007574) #34	PTHLH (ENSCSAG00000007571)	CCDC91 (ENSCSAG00000007565)	FAR2 (ENSCSAG00000007541)	ERGIC2 (ENSCSAG00000007493)
Rhinopithecus	ANCESTRAL SPECIES	65	ENSGT00500000044955.j.b	ENSGT00390000009532.A.d.a	ENSGT00530000063722.a	ENSGT00390000004708.c	ENSGT01030000236698	ENSGT00390000004708.d	ENSGT00390000001810.e	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182839.B.a.a	ENSGT00940000161014	ENSGT00390000007747 #18	ENSGT00910000147260 #17	ENSGT00940000156039 #19	ENSGT00390000002793 #20	ENSGT00390000018003.b.s #22	ENSGT01100000263940 #21	ENSGT00390000008702 #23	ENSGT00390000014557 #24	ENSGT00390000018322 #25	ENSGT00940000153544.b #27	ENSGT00940000160423 #28	ENSGT00940000153380.A #29	ENSGT01050000244951.a.a #30	ENSGT00390000005178 #31	ENSGT00390000003443 #32	ENSGT00940000153377.C #33	ENSGT00940000160124 #34	ENSGT00390000004933	ENSGT00390000015899	ENSGT00390000000924
Golden snub-nosed monkey	MODERN SPECIES	2187							LMNTD1 (ENSRROG00000029522)	ENSRROG00000027147	RASSF8 (ENSRROG00000039653)	BHLHE41 (ENSRROG00000037508)	SSPN (ENSRROG00000023865) #18	ENSRROG00000036680 #17	ITPR2 (ENSRROG00000035439) #19	ENSRROG00000037938	INTS13 (ENSRROG00000043367) #20	FGFR1OP2 (ENSRROG00000031733) #22	ENSRROG00000026425 #21	TM7SF3 (ENSRROG00000029894) #23	MED21 (ENSRROG00000036888) #24	C12orf71 (ENSRROG00000033944) #25	ENSRROG00000036736 #30	STK38L (ENSRROG00000029873) #27	BMAL2 (ENSRROG00000029713) #28	SMCO2 (ENSRROG00000041030) #29	PPFIBP1 (ENSRROG00000042748) #30	REP15 (ENSRROG00000026365) #31	MRPS35 (ENSRROG00000042830) #32	MANSC4 (ENSRROG00000042312) #33	KLHL42 (ENSRROG00000042449) #34	PTHLH (ENSRROG00000035365)	CCDC91 (ENSRROG00000043883)
Black snub-nosed monkey	MODERN SPECIES	2579		BCAT1 (ENSRBIG00000028607)	ENSRBIG00000005977	DNAI7 (ENSRBIG00000035616)	ENSRBIG00000041334	KRAS (ENSRBIG00000037160)	LMNTD1 (ENSRBIG00000044203)	ENSRBIG00000027828	RASSF8 (ENSRBIG00000035003)	BHLHE41 (ENSRBIG00000032629)	SSPN (ENSRBIG00000012155) #18	ENSRBIG00000044357 #17	ENSRBIG00000029333	ITPR2 (ENSRBIG00000035254) #19	INTS13 (ENSRBIG00000038639) #20	FGFR1OP2 (ENSRBIG00000040847) #22	ENSRBIG00000024015 #21	TM7SF3 (ENSRBIG00000027607) #23	MED21 (ENSRBIG00000032391) #24
Cercopithecidae	ANCESTRAL SPECIES																	ENSGT00390000018003.b.t ##22
Cercopithecinae	ANCESTRAL SPECIES																	ENSGT00390000018003.b.t ##22
Cercopithecinae_a	ANCESTRAL SPECIES																	ENSGT00390000018003.b.t ##22
Macaca	ANCESTRAL SPECIES																	ENSGT00390000018003.b.t ##22
Pig-tailed macaque	MODERN SPECIES	196	ARF3 (ENSMNEG00000032173)	WNT10B (ENSMNEG00000022399)	WNT1 (ENSMNEG00000043908)	DDN (ENSMNEG00000036264)	PRKAG1 (ENSMNEG00000032221)	KMT2D (ENSMNEG00000034150)	RHEBL1 (ENSMNEG00000032195)	DHH (ENSMNEG00000033172)	LMBR1L (ENSMNEG00000029874)	TUBA1B (ENSMNEG00000031206)	TUBA1C (ENSMNEG00000000827)	PRPH (ENSMNEG00000033632)	TROAP (ENSMNEG00000039086)	C1QL4 (ENSMNEG00000043324)	DNAJC22 (ENSMNEG00000036498)	ENSMNEG00000037232 ##22	SPATS2 (ENSMNEG00000037739)	KCNH3 (ENSMNEG00000026566)	MCRS1 (ENSMNEG00000040429)	FAM186B (ENSMNEG00000031420)	PRPF40B (ENSMNEG00000033306)	FMNL3 (ENSMNEG00000045499)	ENSMNEG00000044447	ENSMNEG00000040412	NCKAP5L (ENSMNEG00000030526)	BCDIN3D (ENSMNEG00000029191)	ENSMNEG00000031574	FAIM2 (ENSMNEG00000029516)	AQP2 (ENSMNEG00000038948)	AQP5 (ENSMNEG00000032433)	ENSMNEG00000034059
Cercopithecinae_b	ANCESTRAL SPECIES																	ENSGT00390000018003.b.t ##22
Cercopithecinae_d	ANCESTRAL SPECIES	3	ENSGT00940000159521	ENSGT00950000183080.a.a	ENSGT00940000160653	ENSGT00940000160329	ENSGT00390000016495	ENSGT00950000183019.f.b.a	ENSGT00940000156707	ENSGT00940000161665	ENSGT00940000161132	ENSGT00390000007809.a	ENSGT00950000182825.A.a.b.a.b.a.a.a.a.b.m	ENSGT00940000160203	ENSGT00390000012132.d	ENSGT00940000155969	ENSGT00390000012136	ENSGT00390000018003.b.t ##22	ENSGT00390000001138.a	ENSGT00940000161742	ENSGT00390000005536	ENSGT00390000008918.a.a	ENSGT00390000001231.s.b	ENSGT00940000162031	ENSGT00930000150980.b	ENSGT00940000159962	ENSGT00390000005534.b.b.c.b.b.a.b.b	ENSGT01050000244940.a.a.r.a	ENSGT00940000154978.i.a	ENSGT00530000063607.a	ENSGT00940000153993.B	ENSGT00910000146932	ENSGT01050000244890.a.b.b
Drill	MODERN SPECIES	959	WNT10B (ENSMLEG00000023418)	WNT1 (ENSMLEG00000006250)	DDN (ENSMLEG00000042019)	PRKAG1 (ENSMLEG00000040639)	KMT2D (ENSMLEG00000027718)	RHEBL1 (ENSMLEG00000043169)	DHH (ENSMLEG00000029947)	LMBR1L (ENSMLEG00000043801)	ENSMLEG00000026197	ENSMLEG00000031016	TUBA1C (ENSMLEG00000043554)	PRPH (ENSMLEG00000029249)	TROAP (ENSMLEG00000035849)	C1QL4 (ENSMLEG00000032872)	DNAJC22 (ENSMLEG00000021601)	ENSMLEG00000027073 ##22
Sooty mangabey	MODERN SPECIES	571	CCDC65 (ENSCATG00000035262)	ARF3 (ENSCATG00000033929)	WNT1 (ENSCATG00000029984)	WNT10B (ENSCATG00000042594)	DDN (ENSCATG00000041447)	PRKAG1 (ENSCATG00000035196)	KMT2D (ENSCATG00000038964)	RHEBL1 (ENSCATG00000037990)	DHH (ENSCATG00000041798)	LMBR1L (ENSCATG00000012344)	TUBA1B (ENSCATG00000038328)	TUBA1C (ENSCATG00000031924)	PRPH (ENSCATG00000039831)	TROAP (ENSCATG00000043456)	C1QL4 (ENSCATG00000043584)	ENSCATG00000026332 ##22	SPATS2 (ENSCATG00000041816)	KCNH3 (ENSCATG00000031210)	MCRS1 (ENSCATG00000039134)	ENSCATG00000038897	FAM186B (ENSCATG00000031582)	PRPF40B (ENSCATG00000032444)	FMNL3 (ENSCATG00000039154)	ENSCATG00000031091	TMBIM6 (ENSCATG00000044300)	ENSCATG00000038799	NCKAP5L (ENSCATG00000035514)	BCDIN3D (ENSCATG00000044648)	ENSCATG00000044213	FAIM2 (ENSCATG00000035599)	AQP2 (ENSCATG00000035395)
Hominoidea	ANCESTRAL SPECIES	5	ENSGT00500000044955.j.b	ENSGT00390000009532.A.d.a	ENSGT00560000078473	ENSGT01040000242138	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810.e	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182839.B.a.a	ENSGT00940000161014	ENSGT00390000007747 #18	ENSGT00940000156039 #19	ENSGT00390000002793 #20	ENSGT00970000193562	ENSGT00390000018003.b #22	ENSGT00390000008702 #23	ENSGT00390000014557 #24	ENSGT00390000018322 #25	ENSGT00940000153544.b #27	ENSGT00940000160423 #28	ENSGT00940000153380.A #29	ENSGT01050000244951.a.a #30	ENSGT00390000005178 #31	ENSGT00390000003443 #32	ENSGT00940000153377.C #33	ENSGT00940000160124 #34	ENSGT00390000004933	ENSGT00390000015899	ENSGT00390000006367.c	ENSGT00530000063113.A
Hominidae	ANCESTRAL SPECIES	4	ENSGT00500000044955.j.b	ENSGT00390000009532.A.d.a	ENSGT00560000078473	ENSGT01040000242138	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810.e	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182839.B.a.a	ENSGT00940000161014	ENSGT00390000007747 #18	ENSGT00940000156039 #19	ENSGT00390000002793 #20	ENSGT00970000193562	ENSGT00390000018003.b #22	ENSGT00390000008702 #23	ENSGT00390000014557 #24	ENSGT00390000018322 #25	ENSGT00940000153544.b #27	ENSGT00940000160423 #28	ENSGT00940000153380.A #29	ENSGT01050000244951.a.a #30	ENSGT00390000005178 #31	ENSGT00390000003443 #32	ENSGT00940000153377.C #33	ENSGT00940000160124 #34	ENSGT00390000004933	ENSGT00390000015899	ENSGT00390000006367.c	ENSGT00530000063113.A
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	5	ENSGT00500000044955.j.b	ENSGT00390000009532.A.d.a	ENSGT00560000078473	ENSGT01040000242138	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810.e	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182839.B.a.a	ENSGT00940000161014	ENSGT00390000007747 #18	ENSGT00940000156039 #19	ENSGT00390000002793 #20	ENSGT00970000193562	ENSGT00390000018003.b #22	ENSGT00390000008702 #23	ENSGT00390000014557 #24	ENSGT00390000018322 #25	ENSGT00940000153544.b #27	ENSGT00940000160423 #28	ENSGT00940000153380.A #29	ENSGT01050000244951.a.a #30	ENSGT00390000005178 #31	ENSGT00390000003443 #32	ENSGT00940000153377.C #33	ENSGT00940000160124 #34	ENSGT00390000004933	ENSGT00390000015899	ENSGT00390000006367.c	ENSGT00530000063113.A
Homo/Pan group	ANCESTRAL SPECIES	6	ENSGT00390000009532.A.d.a	ENSGT00560000078473	ENSGT01040000242138	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810.e	ENSGT00940000155871	ENSGT00390000014814.a.b.a.a.b	ENSGT00910000144343	ENSGT00950000182839.B.a.a	ENSGT00940000161014	ENSGT00390000007747 #18	ENSGT00940000156039 #19	ENSGT00390000002793 #20	ENSGT01100000263940 #21	ENSGT00390000018003.b #22	ENSGT00390000008702 #23	ENSGT00390000014557 #24	ENSGT00390000018322 #25	ENSGT00940000153544.b #27	ENSGT00940000160423 #28	ENSGT00940000153380.A #29	ENSGT01050000244951.a.a #30	ENSGT00390000005178 #31	ENSGT00390000003443 #32	ENSGT00940000153377.C #33	ENSGT00940000160124 #34	ENSGT00390000004933	ENSGT00390000015899	ENSGT00390000006367.c	ENSGT00530000063113.A
Pan	ANCESTRAL SPECIES	4	ENSGT00560000078473	ENSGT01040000242138	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810.e	ENSGT00940000155871	ENSGT00390000014814.a.b.a.a.b	ENSGT00910000144343	ENSGT00390000000987.b	ENSGT00950000182839.B.a.a	ENSGT00940000161014	ENSGT00390000007747 #18	ENSGT00940000156039 #19	ENSGT00390000002793 #20	ENSGT01100000263940 #21	ENSGT00390000018003.b #22	ENSGT00390000008702 #23	ENSGT00390000014557 #24	ENSGT00390000018322 #25	ENSGT00940000153544.b #27	ENSGT00940000160423 #28	ENSGT00940000153380.A #29	ENSGT01050000244951.a.a #30	ENSGT00390000005178 #31	ENSGT00390000003443 #32	ENSGT00940000153377.C #33	ENSGT00940000160124 #34	ENSGT00390000004933	ENSGT00390000015899	ENSGT00390000006367.c	ENSGT00530000063113.A
Chimpanzee	MODERN SPECIES	3	ENSPTRG00000040566	ENSPTRG00000042522	IRAG2 (ENSPTRG00000004773)	DNAI7 (ENSPTRG00000004774)	ETFRF1 (ENSPTRG00000042785)	KRAS (ENSPTRG00000004775)	ENSPTRG00000048694	LMNTD1 (ENSPTRG00000004776)	ENSPTRG00000042053	RASSF8 (ENSPTRG00000004778)	BHLHE41 (ENSPTRG00000004779)	SSPN (ENSPTRG00000004780) #18	ITPR2 (ENSPTRG00000004781) #19	INTS13 (ENSPTRG00000004782) #20	ENSPTRG00000044155 #21	FGFR1OP2 (ENSPTRG00000004783) #22	TM7SF3 (ENSPTRG00000004784) #23	MED21 (ENSPTRG00000004785) #24	C12H12orf71 (ENSPTRG00000034261) #25	ENSPTRG00000050206 #30	STK38L (ENSPTRG00000004787) #27	ARNTL2 (ENSPTRG00000004788) #28	SMCO2 (ENSPTRG00000004789) #29	PPFIBP1 (ENSPTRG00000004790) #30	REP15 (ENSPTRG00000004791) #31	MRPS35 (ENSPTRG00000004792) #32	MANSC4 (ENSPTRG00000029669) #33	KLHL42 (ENSPTRG00000004793) #34	PTHLH (ENSPTRG00000004794)	CCDC91 (ENSPTRG00000004795)	FAR2 (ENSPTRG00000004796)
Bonobo	MODERN SPECIES	3	ENSPPAG00000031238	BCAT1 (ENSPPAG00000029336)	ENSPPAG00000034604	ENSPPAG00000030103	DNAI7 (ENSPPAG00000029931)	ETFRF1 (ENSPPAG00000039750)	KRAS (ENSPPAG00000038418)	LMNTD1 (ENSPPAG00000019285)	ENSPPAG00000041642	RASSF8 (ENSPPAG00000031944)	ENSPPAG00000035875	SSPN (ENSPPAG00000032921) #18	ITPR2 (ENSPPAG00000027820) #19	INTS13 (ENSPPAG00000012301) #20	ENSPPAG00000007845 #21	FGFR1OP2 (ENSPPAG00000032185) #22	TM7SF3 (ENSPPAG00000033125) #23	MED21 (ENSPPAG00000031067) #24	C12orf71 (ENSPPAG00000039705) #25	ENSPPAG00000030904 #30	STK38L (ENSPPAG00000028856) #27	BMAL2 (ENSPPAG00000040196) #28	SMCO2 (ENSPPAG00000039937) #29	PPFIBP1 (ENSPPAG00000033579) #30	REP15 (ENSPPAG00000022630) #31	ENSPPAG00000008983 #32	ENSPPAG00000024107 #32	MANSC4 (ENSPPAG00000002372) #33	KLHL42 (ENSPPAG00000041574) #34	PTHLH (ENSPPAG00000027940)	CCDC91 (ENSPPAG00000035986)
Human	MODERN SPECIES	3	ST8SIA1 (ENSG00000111728)	C2CD5 (ENSG00000111731)	ETNK1 (ENSG00000139163)	SOX5 (ENSG00000134532)	BCAT1 (ENSG00000060982)	IRAG2 (ENSG00000118308)	DNAI7 (ENSG00000118307)	ETFRF1 (ENSG00000205707)	KRAS (ENSG00000133703)	LMNTD1 (ENSG00000152936)	RASSF8 (ENSG00000123094)	BHLHE41 (ENSG00000123095)	SSPN (ENSG00000123096) #18	ITPR2 (ENSG00000123104) #19	INTS13 (ENSG00000064102) #20	FGFR1OP2 (ENSG00000111790) #22	TM7SF3 (ENSG00000064115) #23	MED21 (ENSG00000152944) #24	C12orf71 (ENSG00000214700) #25	STK38L (ENSG00000211455) #27	BMAL2 (ENSG00000029153) #28	SMCO2 (ENSG00000165935) #29	PPFIBP1 (ENSG00000110841) #30	REP15 (ENSG00000174236) #31	MRPS35 (ENSG00000061794) #32	MANSC4 (ENSG00000205693) #33	KLHL42 (ENSG00000087448) #34	PTHLH (ENSG00000087494)	CCDC91 (ENSG00000123106)	FAR2 (ENSG00000064763)	ERGIC2 (ENSG00000087502)
Gorilla	MODERN SPECIES	3	BCAT1 (ENSGGOG00000009816)	ENSGGOG00000026884	ENSGGOG00000027972	ENSGGOG00000003082	DNAI7 (ENSGGOG00000011368)	ETFRF1 (ENSGGOG00000008571)	KRAS (ENSGGOG00000008043)	ENSGGOG00000036425	LMNTD1 (ENSGGOG00000008836)	ENSGGOG00000026044	BHLHE41 (ENSGGOG00000015498)	SSPN (ENSGGOG00000007092) #18	ITPR2 (ENSGGOG00000008010) #19	INTS13 (ENSGGOG00000011827) #20	ENSGGOG00000043459	FGFR1OP2 (ENSGGOG00000023849) #22	TM7SF3 (ENSGGOG00000016299) #23	MED21 (ENSGGOG00000016313) #24	C12orf71 (ENSGGOG00000013185) #25	STK38L (ENSGGOG00000001820) #27	BMAL2 (ENSGGOG00000007332) #28	ENSGGOG00000013445 #29	PPFIBP1 (ENSGGOG00000013345) #30	REP15 (ENSGGOG00000024389) #31	MRPS35 (ENSGGOG00000003193) #32	MANSC4 (ENSGGOG00000002828) #33	KLHL42 (ENSGGOG00000043294) #34	PTHLH (ENSGGOG00000005291)	CCDC91 (ENSGGOG00000000071)	FAR2 (ENSGGOG00000000571)	ERGIC2 (ENSGGOG00000024865)
Orangutan	MODERN SPECIES	3	ETNK1 (ENSPPYG00000040411)	SOX5 (ENSPPYG00000004363)	BCAT1 (ENSPPYG00000004365)	ENSPPYG00000005175	DNAI7 (ENSPPYG00000038936)	ETFRF1 (ENSPPYG00000004368)	ENSPPYG00000034871	KRAS (ENSPPYG00000041739)	ENSPPYG00000030909	LMNTD1 (ENSPPYG00000004370)	RASSF8 (ENSPPYG00000004371)	BHLHE41 (ENSPPYG00000004372)	SSPN (ENSPPYG00000034586) #18	ITPR2 (ENSPPYG00000004374) #19	INTS13 (ENSPPYG00000029635) #20	FGFR1OP2 (ENSPPYG00000035340) #22	TM7SF3 (ENSPPYG00000004376) #23	MED21 (ENSPPYG00000040114) #24	C12orf71 (ENSPPYG00000004378) #25	STK38L (ENSPPYG00000004379) #27	BMAL2 (ENSPPYG00000004380) #28	SMCO2 (ENSPPYG00000035944) #29	PPFIBP1 (ENSPPYG00000004381) #30	REP15 (ENSPPYG00000037943) #31	MRPS35 (ENSPPYG00000004383) #32	MANSC4 (ENSPPYG00000004384) #33	KLHL42 (ENSPPYG00000033094) #34	PTHLH (ENSPPYG00000004386)	CCDC91 (ENSPPYG00000004387)	FAR2 (ENSPPYG00000004389)	ERGIC2 (ENSPPYG00000004390)
Gibbon	MODERN SPECIES	15	SOX5 (ENSNLEG00000005036)	ENSNLEG00000030792	BCAT1 (ENSNLEG00000005083)	ENSNLEG00000005199	ENSNLEG00000005126	DNAI7 (ENSNLEG00000005202)	ETFRF1 (ENSNLEG00000005260)	KRAS (ENSNLEG00000027684)	LMNTD1 (ENSNLEG00000005275)	RASSF8 (ENSNLEG00000005293)	BHLHE41 (ENSNLEG00000005307)	SSPN (ENSNLEG00000033111) #18	ITPR2 (ENSNLEG00000005317) #19	INTS13 (ENSNLEG00000005368) #20	ENSNLEG00000036090 #21	FGFR1OP2 (ENSNLEG00000005400) #22	TM7SF3 (ENSNLEG00000005416) #23	MED21 (ENSNLEG00000005431) #24	C12orf71 (ENSNLEG00000005438) #25	STK38L (ENSNLEG00000005439) #27	BMAL2 (ENSNLEG00000005463) #28	SMCO2 (ENSNLEG00000005501) #29	PPFIBP1 (ENSNLEG00000005508) #30	REP15 (ENSNLEG00000018530) #31	MRPS35 (ENSNLEG00000036292) #32	MANSC4 (ENSNLEG00000005573) #33	KLHL42 (ENSNLEG00000005575) #34	PTHLH (ENSNLEG00000005581)	CCDC91 (ENSNLEG00000005586)	FAR2 (ENSNLEG00000005604)	ERGIC2 (ENSNLEG00000005620)
Platyrrhini	ANCESTRAL SPECIES	44	ENSGT00390000000212	ENSGT00950000182939.b.a.b	ENSGT00940000156122	ENSGT00390000009532.A.d.a	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182839.B.a.a	ENSGT00940000161014	ENSGT00390000007747 #18	ENSGT00910000147260 #17	ENSGT00940000156039 #19	ENSGT00390000002793 #20	ENSGT00390000018003.b #22	ENSGT00970000193562	ENSGT00390000008702 #23	ENSGT00390000014557 #24	ENSGT00940000153544.b #27	ENSGT00940000160423 #28	ENSGT01100000266953	ENSGT00940000153380.A #29	ENSGT00390000018322 #25	ENSGT01050000244951.a.a #30	ENSGT00390000005178 #31	ENSGT00390000003443 #32	ENSGT00940000153377.C #33	ENSGT00940000160124 #34	ENSGT00390000004933	ENSGT00390000015899
Cebidae	ANCESTRAL SPECIES	2	ENSGT00390000000212	ENSGT00950000182939.b.a.b	ENSGT00940000156122	ENSGT00390000009532.A.d.a	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182839.B.a.a	ENSGT00940000161014	ENSGT00390000007747 #18	ENSGT00910000147260 #17	ENSGT00940000156039 #19	ENSGT00390000002793 #20	ENSGT00390000018003.b #22	ENSGT00970000193562	ENSGT00390000008702 #23	ENSGT00390000014557 #24	ENSGT00940000153544.b #27	ENSGT00940000160423 #28	ENSGT01100000266953	ENSGT00940000153380.A #29	ENSGT00390000018322 #25	ENSGT01050000244951.a.a #30	ENSGT00390000005178 #31	ENSGT00390000003443 #32	ENSGT00940000153377.C #33	ENSGT00940000160124 #34	ENSGT00390000004933	ENSGT00390000015899
Cebidae_a	ANCESTRAL SPECIES	5	ENSGT00390000000212	ENSGT00950000182939.b.a.b	ENSGT00940000156122	ENSGT00390000009532.A.d.a	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182839.B.a.a	ENSGT00940000161014	ENSGT00390000007747 #18	ENSGT00910000147260 #17	ENSGT00940000156039 #19	ENSGT00390000002793 #20	ENSGT00390000018003.b #22	ENSGT00970000193562	ENSGT00390000008702 #23	ENSGT00390000014557 #24	ENSGT00940000153544.b #27	ENSGT00940000160423 #28	ENSGT01100000266953	ENSGT00940000153380.A #29	ENSGT00390000018322 #25	ENSGT01050000244951.a.a #30	ENSGT00390000003443 #32	ENSGT00940000153377.C #33	ENSGT00940000160124 #34	ENSGT00390000004933	ENSGT00390000015899	ENSGT00390000006367.c
Bolivian squirrel monkey	MODERN SPECIES	60	C2CD5 (ENSSBOG00000030915)	ETNK1 (ENSSBOG00000032121)	SOX5 (ENSSBOG00000035936)	BCAT1 (ENSSBOG00000019950)	ENSSBOG00000033246	ENSSBOG00000019545	DNAI7 (ENSSBOG00000028936)	ETFRF1 (ENSSBOG00000025823)	KRAS (ENSSBOG00000022477)	LMNTD1 (ENSSBOG00000026881)	RASSF8 (ENSSBOG00000021926)	BHLHE41 (ENSSBOG00000021412)	SSPN (ENSSBOG00000023830) #18	ITPR2 (ENSSBOG00000027480) #19	INTS13 (ENSSBOG00000020959) #20	FGFR1OP2 (ENSSBOG00000026484) #22	ENSSBOG00000013153	TM7SF3 (ENSSBOG00000027680) #23	MED21 (ENSSBOG00000025603) #24	STK38L (ENSSBOG00000027436) #27	BMAL2 (ENSSBOG00000029898) #28	ENSSBOG00000026212	SMCO2 (ENSSBOG00000028718) #29	PPFIBP1 (ENSSBOG00000019194) #30	C12orf71 (ENSSBOG00000030192) #25	MRPS35 (ENSSBOG00000031588) #32	ENSSBOG00000026098	MANSC4 (ENSSBOG00000020036) #33	KLHL42 (ENSSBOG00000015570) #34	PTHLH (ENSSBOG00000031102)	CCDC91 (ENSSBOG00000021408)
Capuchin	MODERN SPECIES	367									LMNTD1 (ENSCCAG00000022403)	RASSF8 (ENSCCAG00000025704)	BHLHE41 (ENSCCAG00000005712)	SSPN (ENSCCAG00000030479) #18	ENSCCAG00000028411 #17	ITPR2 (ENSCCAG00000034633) #19	INTS13 (ENSCCAG00000024460) #20	FGFR1OP2 (ENSCCAG00000025617) #22	TM7SF3 (ENSCCAG00000031795) #23	MED21 (ENSCCAG00000032523) #24	C12orf71 (ENSCCAG00000026272) #25	RPSA (ENSCCAG00000005344)	STK38L (ENSCCAG00000028613) #27	ARNTL2 (ENSCCAG00000032347) #28	SMCO2 (ENSCCAG00000033880) #29	PPFIBP1 (ENSCCAG00000027863) #30	MRPS35 (ENSCCAG00000026788) #32	MANSC4 (ENSCCAG00000021395) #33	KLHL42 (ENSCCAG00000037388) #34
Marmoset	MODERN SPECIES	21	C2CD5 (ENSCJAG00000047559)	ENSCJAG00000072867	ETNK1 (ENSCJAG00000042185)	SOX5 (ENSCJAG00000044866)	BCAT1 (ENSCJAG00000044064)	ENSCJAG00000047139	DNAI7 (ENSCJAG00000038718)	ETFRF1 (ENSCJAG00000082700)	KRAS (ENSCJAG00000044757)	LMNTD1 (ENSCJAG00000045286)	RASSF8 (ENSCJAG00000038818)	BHLHE41 (ENSCJAG00000045144)	SSPN (ENSCJAG00000041997) #18	ITPR2 (ENSCJAG00000047807) #19	INTS13 (ENSCJAG00000044044) #20	FGFR1OP2 (ENSCJAG00000043357) #22	TM7SF3 (ENSCJAG00000046477) #23	MED21 (ENSCJAG00000083235) #24	C12orf71 (ENSCJAG00000072248) #25	STK38L (ENSCJAG00000041419) #27	BMAL2 (ENSCJAG00000046502) #28	SMCO2 (ENSCJAG00000041251) #29	PPFIBP1 (ENSCJAG00000038353) #30	REP15 (ENSCJAG00000054786) #31	MRPS35 (ENSCJAG00000043200) #32	MANSC4 (ENSCJAG00000042221) #33	KLHL42 (ENSCJAG00000047536) #34	ENSCJAG00000086155	PTHLH (ENSCJAG00000043999)	CCDC91 (ENSCJAG00000040247)	FAR2 (ENSCJAG00000046025)
Mas night monkey	MODERN SPECIES	1110	ENSANAG00000019454	SOX5 (ENSANAG00000035934)	BCAT1 (ENSANAG00000024086)	ENSANAG00000031949	DNAI7 (ENSANAG00000030533)	ENSANAG00000020002	KRAS (ENSANAG00000030296)	ENSANAG00000020670	LMNTD1 (ENSANAG00000015391)	RASSF8 (ENSANAG00000019236)	BHLHE41 (ENSANAG00000035475)	ENSANAG00000031081 #17	SSPN (ENSANAG00000025202) #18	ITPR2 (ENSANAG00000022196) #19	INTS13 (ENSANAG00000022317) #20	FGFR1OP2 (ENSANAG00000035478) #22	TM7SF3 (ENSANAG00000030204) #23	MED21 (ENSANAG00000025951) #24	ENSANAG00000023438	STK38L (ENSANAG00000025609) #27	BMAL2 (ENSANAG00000034090) #28	SMCO2 (ENSANAG00000030042) #29
Tarsier	MODERN SPECIES	4538														ITPR2 (ENSTSYG00000001841) #19	INTS13 (ENSTSYG00000011213) #20	FGFR1OP2 (ENSTSYG00000032425) #22	TM7SF3 (ENSTSYG00000013948) #23	MED21 (ENSTSYG00000013953) #24
Strepsirrhini	ANCESTRAL SPECIES	3	ENSGT00390000000212	ENSGT00950000182939.b.a.b	ENSGT00940000156122	ENSGT00390000009532.A.d.a	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182839.B.a.a	ENSGT00940000161014	ENSGT00390000007747 #18	ENSGT00940000156039 #19	ENSGT00390000002793 #20	ENSGT00970000193562	ENSGT00390000018003.b #22	ENSGT00390000008702 #23	ENSGT00390000014557 #24	ENSGT00940000153544.b #27	ENSGT00940000160423 #28	ENSGT00940000153380.A #29	ENSGT00390000018322 #25	ENSGT01050000244951.a.a #30	ENSGT00390000005178 #31	ENSGT00390000003443 #32	ENSGT00940000153377.C #33	ENSGT00940000160124 #34	ENSGT00390000004933	ENSGT00390000015899	ENSGT00390000006367.c	ENSGT00530000063113.A
Bushbaby	MODERN SPECIES	172	C2CD5 (ENSOGAG00000016517)	ETNK1 (ENSOGAG00000033436)	SOX5 (ENSOGAG00000002524)	BCAT1 (ENSOGAG00000013677)	IRAG2 (ENSOGAG00000014796)	DNAI7 (ENSOGAG00000014801)	ETFRF1 (ENSOGAG00000014810)	KRAS (ENSOGAG00000014812)	ENSOGAG00000011065	ENSOGAG00000026045	RASSF8 (ENSOGAG00000026328)	ENSOGAG00000032001	SSPN (ENSOGAG00000028077) #18	ITPR2 (ENSOGAG00000009785) #19	INTS13 (ENSOGAG00000009801) #20	FGFR1OP2 (ENSOGAG00000003431) #22	MED21 (ENSOGAG00000011215) #24	STK38L (ENSOGAG00000028901) #27	BMAL2 (ENSOGAG00000011668) #28	ENSOGAG00000024687	SMCO2 (ENSOGAG00000005287) #29	ENSOGAG00000032700 #25	PPFIBP1 (ENSOGAG00000010615) #30	MRPS35 (ENSOGAG00000010630) #32	MANSC4 (ENSOGAG00000010634) #33	KLHL42 (ENSOGAG00000010636) #34	ENSOGAG00000028656	PTHLH (ENSOGAG00000010639)	ENSOGAG00000000760	FAR2 (ENSOGAG00000015527)	ERGIC2 (ENSOGAG00000014293)
Lemuriformes	ANCESTRAL SPECIES	1	ENSGT00940000156122	ENSGT00390000009532.A.d.a	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155653.a	ENSGT01030000236698	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182839.B.a.a	ENSGT00940000161014	ENSGT00390000007747 #18	ENSGT00940000156039 #19	ENSGT00390000002793 #20	ENSGT00970000193562	ENSGT00390000018003.b #22	ENSGT00390000008702 #23	ENSGT00390000014557 #24	ENSGT00940000153544.b #27	ENSGT00940000160423 #28	ENSGT00940000153380.A #29	ENSGT00390000018322 #25	ENSGT01050000244951.a.a #30	ENSGT00390000005178 #31	ENSGT00390000003443 #32	ENSGT00940000153377.C #33	ENSGT00940000160124 #34	ENSGT00390000004933	ENSGT00390000015899	ENSGT00390000006367.c	ENSGT00530000063113.A
Lemuriformes_a	ANCESTRAL SPECIES	8	ENSGT00940000156122	ENSGT00390000009532.A.d.a	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155653.a	ENSGT01030000236698	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182839.B.a.a	ENSGT00940000161014	ENSGT00390000007747 #18	ENSGT00940000156039 #19	ENSGT00390000002793 #20	ENSGT00970000193562	ENSGT00390000018003.b #22	ENSGT00390000008702 #23	ENSGT00390000014557 #24	ENSGT00940000153544.b #27	ENSGT00940000160423 #28	ENSGT00940000153380.A #29	ENSGT00390000018322 #25	ENSGT01050000244951.a.a #30	ENSGT00390000005178 #31	ENSGT00390000003443 #32	ENSGT00940000153377.C #33	ENSGT00940000160124 #34	ENSGT00390000004933	ENSGT00390000015899	ENSGT00390000006367.c	ENSGT00530000063113.A
Coquerels sifaka	MODERN SPECIES	213	ETNK1 (ENSPCOG00000018996)	ENSPCOG00000022604	SOX5 (ENSPCOG00000019087)	ENSPCOG00000019414	BCAT1 (ENSPCOG00000018741)	IRAG2 (ENSPCOG00000025021)	DNAI7 (ENSPCOG00000023975)	ETFRF1 (ENSPCOG00000014691)	ENSPCOG00000016197	LMNTD1 (ENSPCOG00000004145)	RASSF8 (ENSPCOG00000017337)	BHLHE41 (ENSPCOG00000013824)	SSPN (ENSPCOG00000009425) #18	ITPR2 (ENSPCOG00000011044) #19	INTS13 (ENSPCOG00000011504) #20	FGFR1OP2 (ENSPCOG00000025820) #22	ENSPCOG00000022092 #23	ENSPCOG00000028642 #24	ENSPCOG00000027070 #24	STK38L (ENSPCOG00000018208) #27	BMAL2 (ENSPCOG00000026401) #28	ENSPCOG00000026042 #29	C12orf71 (ENSPCOG00000025010) #25	PPFIBP1 (ENSPCOG00000024753) #30	ENSPCOG00000015665 #32	MANSC4 (ENSPCOG00000024207) #33	KLHL42 (ENSPCOG00000028752) #34	ENSPCOG00000013305	PTHLH (ENSPCOG00000027440)	ENSPCOG00000020695	ENSPCOG00000023013
Greater bamboo lemur	MODERN SPECIES	261	STAMBP (ENSPSMG00000018623)	ENSPSMG00000018607	ENSPSMG00000018599	DUSP11 (ENSPSMG00000018582)	ENSPSMG00000018579	KRAS (ENSPSMG00000018515)	LMNTD1 (ENSPSMG00000018464)	RASSF8 (ENSPSMG00000018430)	ENSPSMG00000018416	BHLHE41 (ENSPSMG00000018412)	SSPN (ENSPSMG00000018398) #18	ENSPSMG00000018385	ITPR2 (ENSPSMG00000018351) #19	INTS13 (ENSPSMG00000018258) #20	ENSPSMG00000018245	FGFR1OP2 (ENSPSMG00000018233) #22	TM7SF3 (ENSPSMG00000018210) #23	MED21 (ENSPSMG00000018193) #24
Mouse lemur	MODERN SPECIES	29	C2CD5 (ENSMICG00000002294)	ETNK1 (ENSMICG00000009917)	ENSMICG00000041591	ENSMICG00000031363	ENSMICG00000036516	ENSMICG00000004844	IRAG2 (ENSMICG00000030721)	ETFRF1 (ENSMICG00000031339)	DNAI7 (ENSMICG00000001474)	LMNTD1 (ENSMICG00000038042)	RASSF8 (ENSMICG00000006156)	BHLHE41 (ENSMICG00000026785)	SSPN (ENSMICG00000029815) #18	ITPR2 (ENSMICG00000009476) #19	INTS13 (ENSMICG00000037722) #20	FGFR1OP2 (ENSMICG00000035135) #22	SOX5 (ENSMICG00000046531)	ENSMICG00000006940	AMN1 (ENSMICG00000034335)	RESF1 (ENSMICG00000038464)	BICD1 (ENSMICG00000014915)	ENSMICG00000034434	FGD4 (ENSMICG00000017663)	DNM1L (ENSMICG00000017715)	YARS2 (ENSMICG00000033335)	PKP2 (ENSMICG00000001164)	OR6C4 (ENSMICG00000013185)	ENSMICG00000017533	ITGA7 (ENSMICG00000010827)	BLOC1S1 (ENSMICG00000010878)	RDH5 (ENSMICG00000043819)
Euarchontoglires_A	ANCESTRAL SPECIES	5	ENSGT01030000234535.D	ENSGT00390000000212	ENSGT00950000182939.b.a.b	ENSGT00940000156122	ENSGT00390000009532.A.d.a	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182839.B.a.a	ENSGT00940000161014	ENSGT00390000007747 #18	ENSGT00940000156039 #19	ENSGT00390000002793 #20	ENSGT00390000018003.b #22	ENSGT00970000193562	ENSGT00390000008702 #23	ENSGT00390000014557 #24	ENSGT00940000153544.b #27	ENSGT00940000160423 #28	ENSGT00940000153380.A #29	ENSGT00390000018322 #25	ENSGT01050000244951.a.a #30	ENSGT00390000005178 #31	ENSGT00390000003443 #32	ENSGT00940000153377.C #33	ENSGT00940000160124 #34	ENSGT00390000004933	ENSGT00390000015899	ENSGT00390000006367.c
Tree shrew	MODERN SPECIES	5711														ENSTBEG00000011096 #20	ENSTBEG00000011350	FGFR1OP2 (ENSTBEG00000011581) #22	TM7SF3 (ENSTBEG00000011725) #23	MED21 (ENSTBEG00000012031) #24
Glires	ANCESTRAL SPECIES	4	ENSGT01030000234535.D	ENSGT00390000000212	ENSGT00950000182939.b.a.b	ENSGT00940000156122	ENSGT00390000009532.A.d.a	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182839.B.a.a	ENSGT00940000161014	ENSGT00390000007747 #18	ENSGT00940000156039 #19	ENSGT00390000002793 #20	ENSGT00390000018003.b #22	ENSGT00970000193562	ENSGT00390000008702 #23	ENSGT00390000014557 #24	ENSGT00940000153544.b #27	ENSGT00940000160423 #28	ENSGT00940000153380.A #29	ENSGT00390000018322 #25	ENSGT01050000244951.a.a #30	ENSGT00390000005178 #31	ENSGT00390000003443 #32	ENSGT00940000153377.C #33	ENSGT00940000160124 #34	ENSGT00390000004933	ENSGT00390000015899	ENSGT00390000006367.c
Lagomorpha	ANCESTRAL SPECIES	27	ENSGT00390000000212	ENSGT00950000182939.b.a.b	ENSGT00940000156122	ENSGT00390000009532.A.d.a	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182839.B.a.a	ENSGT00940000161014	ENSGT00390000007747 #18	ENSGT00940000156039 #19	ENSGT00390000002793 #20	ENSGT00970000193562	ENSGT00390000018003.b #22	ENSGT00390000008702 #23	ENSGT00390000014557 #24	ENSGT00940000153544.b #27	ENSGT00940000160423 #28	ENSGT00940000153380.A #29	ENSGT00390000018322 #25	ENSGT01050000244951.a.a #30	ENSGT00390000005178 #31	ENSGT00390000003443 #32	ENSGT00940000153377.C #33	ENSGT00940000160124 #34	ENSGT00390000004933	ENSGT00390000015899	ENSGT00390000006367.c	ENSGT00530000063113.A
Rabbit	MODERN SPECIES	19	ENSOCUG00000027097	SOX5 (ENSOCUG00000011479)	BCAT1 (ENSOCUG00000003963)	ENSOCUG00000038101	IRAG2 (ENSOCUG00000015956)	DNAI7 (ENSOCUG00000015984)	ETFRF1 (ENSOCUG00000012099)	KRAS (ENSOCUG00000012106)	LMNTD1 (ENSOCUG00000006725)	RASSF8 (ENSOCUG00000010737)	ENSOCUG00000032502	SSPN (ENSOCUG00000010739) #18	ITPR2 (ENSOCUG00000010741) #19	INTS13 (ENSOCUG00000008328) #20	ENSOCUG00000038072	FGFR1OP2 (ENSOCUG00000008342) #22	TM7SF3 (ENSOCUG00000008344) #23	MED21 (ENSOCUG00000034587) #24	STK38L (ENSOCUG00000022781) #27	BMAL2 (ENSOCUG00000007097) #28	ENSOCUG00000016178 #29	ENSOCUG00000022613 #25	PPFIBP1 (ENSOCUG00000016191) #30	REP15 (ENSOCUG00000016210) #31	MRPS35 (ENSOCUG00000016214) #32	MANSC4 (ENSOCUG00000016228) #33	KLHL42 (ENSOCUG00000016233) #34	ENSOCUG00000021018	PTHLH (ENSOCUG00000013864)	CCDC91 (ENSOCUG00000029161)	ENSOCUG00000032847
Pika	MODERN SPECIES	240																ENSOPRG00000015499 #22
Rodentia	ANCESTRAL SPECIES	5	ENSGT01030000234535.D	ENSGT00390000000212	ENSGT00950000182939.b.a.b	ENSGT00940000156122	ENSGT00390000009532.A.d.a	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182839.B.a.a	ENSGT00940000161014	ENSGT00390000007747 #18	ENSGT00940000156039 #19	ENSGT00390000002793 #20	ENSGT00390000018003.b #22	ENSGT00970000193562	ENSGT00390000008702 #23	ENSGT00390000014557 #24	ENSGT00940000153544.b #27	ENSGT00940000160423 #28	ENSGT00940000153380.A #29	ENSGT00390000018322 #25	ENSGT01050000244951.a.a #30	ENSGT00390000005178 #31	ENSGT00390000003443 #32	ENSGT00940000153377.C #33	ENSGT00940000160124 #34	ENSGT00390000004933	ENSGT00390000015899	ENSGT00390000006367.c
Rodentia_B	ANCESTRAL SPECIES	3	ENSGT01030000234535.D	ENSGT00390000000212	ENSGT00950000182939.b.a.b	ENSGT00940000156122	ENSGT00390000009532.A.d.a	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182839.B.a.a	ENSGT00940000161014	ENSGT00390000007747 #18	ENSGT00940000156039 #19	ENSGT00390000002793 #20	ENSGT00390000018003.b #22	ENSGT00970000193562	ENSGT00390000008702 #23	ENSGT00390000014557 #24	ENSGT00940000153544.b #27	ENSGT00940000160423 #28	ENSGT00940000153380.A #29	ENSGT00390000018322 #25	ENSGT01050000244951.a.a #30	ENSGT00390000005178 #31	ENSGT00390000003443 #32	ENSGT00940000153377.C #33	ENSGT00940000160124 #34	ENSGT00390000004933	ENSGT00390000015899	ENSGT00390000006367.c
Myomorpha	ANCESTRAL SPECIES	15	ENSGT01030000234535.D	ENSGT00390000000212	ENSGT00950000182939.b.a.b	ENSGT00940000156122	ENSGT00390000009532.A.d.a	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182839.B.a.a	ENSGT00940000161014	ENSGT00390000007747 #18	ENSGT00940000156039 #19	ENSGT00390000002793 #20	ENSGT00390000018003.b #22	ENSGT00970000193562	ENSGT00390000008702 #23	ENSGT00390000014557 #24	ENSGT00940000153544.b #27	ENSGT00940000160423 #28	ENSGT00940000153380.A #29	ENSGT00390000018322 #25	ENSGT01050000244951.a.a #30	ENSGT00390000005178 #31	ENSGT00390000003443 #32	ENSGT00940000153377.C #33	ENSGT00940000160124 #34	ENSGT00390000004933	ENSGT00390000015899	ENSGT00390000006367.c
Muroidea	ANCESTRAL SPECIES	24	ENSGT01030000234535.D	ENSGT00390000000212	ENSGT00950000182939.b.a.b	ENSGT00940000156122	ENSGT00390000009532.A.d.a	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182839.B.a.a	ENSGT00940000161014	ENSGT00390000007747 #18	ENSGT00940000156039 #19	ENSGT00390000002793 #20	ENSGT00390000018003.b #22	ENSGT00970000193562	ENSGT00390000008702 #23	ENSGT00390000014557 #24	ENSGT00940000153544.b #27	ENSGT00940000160423 #28	ENSGT00940000153380.A #29	ENSGT00390000018322 #25	ENSGT01050000244951.a.a #30	ENSGT00390000005178 #31	ENSGT00390000003443 #32	ENSGT00940000153377.C #33	ENSGT00940000160124 #34	ENSGT00390000004933	ENSGT00390000015899	ENSGT00390000006367.c
Muroidea_A	ANCESTRAL SPECIES	4	ENSGT00390000000212	ENSGT00950000182939.b.a.b	ENSGT00940000156122	ENSGT00390000009532.A.d.a	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182825.B	ENSGT00950000182839.B.a.a	ENSGT00940000161014	ENSGT00390000007747 #18	ENSGT00940000156039 #19	ENSGT00390000002793 #20	ENSGT00390000018003.b #22	ENSGT00970000193562	ENSGT00390000008702 #23	ENSGT00390000014557 #24	ENSGT00940000153544.b #27	ENSGT00940000160423 #28	ENSGT00940000153380.A #29	ENSGT00390000018322 #25	ENSGT01050000244951.a.a #30	ENSGT00390000005178 #31	ENSGT00390000003443 #32	ENSGT00940000153377.C #33	ENSGT00940000160124 #34	ENSGT00390000004933	ENSGT00390000015899	ENSGT00390000006367.c
Cricetidae	ANCESTRAL SPECIES	3	ENSGT00390000000212	ENSGT00950000182939.b.a.b	ENSGT00940000156122	ENSGT00390000009532.A.d.a	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182825.B	ENSGT00950000182839.B.a.a	ENSGT00940000161014	ENSGT00390000007747.l #18	ENSGT00940000156039 #19	ENSGT00390000002793 #20	ENSGT00390000018003.b #22	ENSGT00970000193562	ENSGT00390000008702 #23	ENSGT00390000014557 #24	ENSGT00940000153544.b #27	ENSGT00940000160423 #28	ENSGT00940000153380.A #29	ENSGT00390000018322 #25	ENSGT01050000244951.a.a #30	ENSGT00390000005178 #31	ENSGT00390000003443 #32	ENSGT00940000153377.C #33	ENSGT00940000160124 #34	ENSGT00390000004933	ENSGT00390000015899	ENSGT00390000006367.c
Cricetidae_B	ANCESTRAL SPECIES	14	ENSGT00390000000212	ENSGT00950000182939.b.a.b	ENSGT00940000156122	ENSGT00390000009532.A.d.a	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182825.B	ENSGT00950000182839.B.a.a	ENSGT00940000161014	ENSGT00390000007747.l #18	ENSGT00940000156039 #19	ENSGT00390000002793 #20	ENSGT00390000018003.b #22	ENSGT00970000193562	ENSGT00390000008702 #23	ENSGT00390000014557 #24	ENSGT00940000153544.b #27	ENSGT00940000160423 #28	ENSGT00940000153380.A #29	ENSGT00390000018322 #25	ENSGT01050000244951.a.a #30	ENSGT00390000005178 #31	ENSGT00390000003443 #32	ENSGT00940000153377.C #33	ENSGT00940000160124 #34	ENSGT00390000004933	ENSGT00390000015899	ENSGT00390000006367.c
Northern American deer mouse	MODERN SPECIES	16	C2cd5 (ENSPEMG00000007233)	Etnk1 (ENSPEMG00000022752)	Sox5 (ENSPEMG00000002152)	Bcat1 (ENSPEMG00000023771)	Irag2 (ENSPEMG00000023409)	Casc1 (ENSPEMG00000008126)	Etfrf1 (ENSPEMG00000023976)	Kras (ENSPEMG00000025855)	Lmntd1 (ENSPEMG00000014844)	ENSPEMG00000028173	Rassf8 (ENSPEMG00000007472)	Bhlhe41 (ENSPEMG00000008096)	Sspn (ENSPEMG00000028151) #18	Itpr2 (ENSPEMG00000015317) #19	Ints13 (ENSPEMG00000005292) #20	Fgfr1op2 (ENSPEMG00000020963) #22	ENSPEMG00000025563	Tm7sf3 (ENSPEMG00000023529) #23	Med21 (ENSPEMG00000008474) #24	Stk38l (ENSPEMG00000021788) #27	Arntl2 (ENSPEMG00000020386) #28	Smco2 (ENSPEMG00000012053) #29	1700034J05Rik (ENSPEMG00000027073) #25	Ppfibp1 (ENSPEMG00000009235) #30	Rep15 (ENSPEMG00000001876) #31	Mrps35 (ENSPEMG00000005515) #32	Mansc4 (ENSPEMG00000020408) #33	Klhl42 (ENSPEMG00000025004) #34	Pthlh (ENSPEMG00000022898)	Ccdc91 (ENSPEMG00000013667)	ENSPEMG00000015054
Prairie vole	MODERN SPECIES	82	C2cd5 (ENSMOCG00000005597)	Etnk1 (ENSMOCG00000015568)	Sox5 (ENSMOCG00000003982)	Bcat1 (ENSMOCG00000018342)	Irag2 (ENSMOCG00000001897)	Casc1 (ENSMOCG00000010336)	Etfrf1 (ENSMOCG00000000926)	Kras (ENSMOCG00000011313)	Lmntd1 (ENSMOCG00000008486)	ENSMOCG00000016727	Rassf8 (ENSMOCG00000017540)	Bhlhe41 (ENSMOCG00000002571)	Sspn (ENSMOCG00000014308) #18	Itpr2 (ENSMOCG00000001208) #19	Ints13 (ENSMOCG00000001190) #20	Fgfr1op2 (ENSMOCG00000009226) #22	Tm7sf3 (ENSMOCG00000018940) #23	Med21 (ENSMOCG00000010866) #24	Stk38l (ENSMOCG00000005424) #27	Arntl2 (ENSMOCG00000019503) #28	Smco2 (ENSMOCG00000012704) #29	1700034J05Rik (ENSMOCG00000009791) #25	ENSMOCG00000014471	ENSMOCG00000010996 ##30	ENSMOCG00000021752 #30	Rep15 (ENSMOCG00000022601) #31	Mrps35 (ENSMOCG00000000925) #32	ENSMOCG00000002568 #33	Klhl42 (ENSMOCG00000007352) #34	Pthlh (ENSMOCG00000022411)	Ccdc91 (ENSMOCG00000019216)
Cricetinae	ANCESTRAL SPECIES	32	ENSGT01030000234535.D	ENSGT00390000000212	ENSGT00950000182939.b.a.b	ENSGT00940000156122	ENSGT00390000009532.A.d.a	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182839.B.a.a	ENSGT00940000161014	ENSGT00390000007747.l #18	ENSGT00940000156039 #19	ENSGT00390000002793 #20	ENSGT00390000018003.b #22	ENSGT00390000008702 #23	ENSGT00390000014557 #24	ENSGT00940000153544.b #27	ENSGT00940000160423 #28	ENSGT00940000153380.A #29	ENSGT00390000018322 #25	ENSGT01050000244951.a.a #30	ENSGT00390000005178 #31	ENSGT00390000003443 #32	ENSGT00940000153377.C #33	ENSGT00940000160124 #34	ENSGT00390000004933	ENSGT00390000015899	ENSGT00390000006367.c	ENSGT00530000063113.A
Golden Hamster	MODERN SPECIES	653	St8sia1 (ENSMAUG00000010851)	C2cd5 (ENSMAUG00000012466)	Etnk1 (ENSMAUG00000002984)	Sox5 (ENSMAUG00000010173)	Bcat1 (ENSMAUG00000011499)	Irag2 (ENSMAUG00000019896)	Casc1 (ENSMAUG00000002903)	Etfrf1 (ENSMAUG00000016742)	Kras (ENSMAUG00000017232)	ENSMAUG00000020897	ENSMAUG00000010609	ENSMAUG00000015512	Itpr2 (ENSMAUG00000012727) #19	ENSMAUG00000018663	Ints13 (ENSMAUG00000002411) #20	Fgfr1op2 (ENSMAUG00000011732) #22	Tm7sf3 (ENSMAUG00000014859) #23	ENSMAUG00000019929 #24	Stk38l (ENSMAUG00000002721) #27	Arntl2 (ENSMAUG00000015279) #28	Smco2 (ENSMAUG00000011476) #29	ENSMAUG00000012620 #30	ENSMAUG00000020104 #30	Pthlh (ENSMAUG00000016105)	Ccdc91 (ENSMAUG00000013545)	Far2 (ENSMAUG00000017825)	Ergic2 (ENSMAUG00000007255)	Tmtc1 (ENSMAUG00000012612)	ENSMAUG00000009532	Ipo8 (ENSMAUG00000011526)	Caprin2 (ENSMAUG00000008195)
Chinese hamster chok1gshd	MODERN SPECIES	225	C2cd5 (ENSCGRG00001021395)	Etnk1 (ENSCGRG00001015598)	Sox5 (ENSCGRG00001014221)	Bcat1 (ENSCGRG00001011881)	Irag2 (ENSCGRG00001010745)	Casc1 (ENSCGRG00001009857)	ENSCGRG00001007087	ENSCGRG00001006529	Lmntd1 (ENSCGRG00001004513)	ENSCGRG00001001500	Rassf8 (ENSCGRG00001000661)	Bhlhe41 (ENSCGRG00001000097)	Sspn (ENSCGRG00001023564) #18	Itpr2 (ENSCGRG00001022595) #19	Ints13 (ENSCGRG00001017512) #20	Fgfr1op2 (ENSCGRG00001017121) #22	Tm7sf3 (ENSCGRG00001016691) #23	Med21 (ENSCGRG00001016121) #24	Stk38l (ENSCGRG00001006809) #27	Arntl2 (ENSCGRG00001003351) #28	Smco2 (ENSCGRG00001000723) #29	1700034J05Rik (ENSCGRG00001000357) #25	Ppfibp1 (ENSCGRG00001020798) #30	Rep15 (ENSCGRG00001015483) #31	Mrps35 (ENSCGRG00001019645) #32	ENSCGRG00001019034 #33	Klhl42 (ENSCGRG00001018708) #34	Pthlh (ENSCGRG00001018338)	Ccdc91 (ENSCGRG00001017789)
Murinae	ANCESTRAL SPECIES	4	ENSGT00390000000212	ENSGT00950000182939.b.a.b	ENSGT00940000156122	ENSGT00390000009532.A.d.a	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182825.B	ENSGT00950000182839.B.a.a	ENSGT00940000161014	ENSGT00390000007747 #18	ENSGT00940000156039 #19	ENSGT00390000002793 #20	ENSGT00390000018003.b #22	ENSGT00390000008702 #23	ENSGT00390000014557 #24	ENSGT00940000153544.b #27	ENSGT00940000160423 #28	ENSGT00940000153380.A #29	ENSGT00390000018322 #25	ENSGT01050000244951.a.a #30	ENSGT00390000005178 #31	ENSGT00390000003443 #32	ENSGT00940000153377.C #33	ENSGT00940000160124 #34	ENSGT00390000004933	ENSGT00390000015899	ENSGT00390000006367.c	ENSGT00530000063113.A
Mus	ANCESTRAL SPECIES	12	ENSGT00390000000212	ENSGT00950000182939.b.a.b	ENSGT00940000156122	ENSGT00390000009532.A.d.a	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182825.B	ENSGT00950000182839.B.a.a	ENSGT00940000161014	ENSGT00390000007747 #18	ENSGT00940000156039 #19	ENSGT00390000002793 #20	ENSGT00390000018003.b #22	ENSGT00390000008702 #23	ENSGT00390000014557 #24	ENSGT00940000153544.b #27	ENSGT00940000160423 #28	ENSGT00940000153380.A #29	ENSGT00390000018322 #25	ENSGT01050000244951.a.a #30	ENSGT00390000005178 #31	ENSGT00390000003443 #32	ENSGT00940000153377.C #33	ENSGT00940000160124 #34	ENSGT00390000004933	ENSGT00390000015899	ENSGT00390000006367.c	ENSGT00530000063113.A
Mus_A	ANCESTRAL SPECIES	7	ENSGT00390000000212	ENSGT00950000182939.b.a.b	ENSGT00940000156122	ENSGT00390000009532.A.d.a	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182825.B	ENSGT00950000182839.B.a.a	ENSGT00940000161014	ENSGT00390000007747 #18	ENSGT00940000156039 #19	ENSGT00390000002793 #20	ENSGT00390000018003.b #22	ENSGT00390000008702 #23	ENSGT00390000014557 #24	ENSGT00940000153544.b #27	ENSGT00940000160423 #28	ENSGT00940000153380.A #29	ENSGT00390000018322 #25	ENSGT01050000244951.a.a #30	ENSGT00390000005178 #31	ENSGT00390000003443 #32	ENSGT00940000153377.C #33	ENSGT00940000160124 #34	ENSGT00390000004933	ENSGT00390000015899	ENSGT00390000006367.c	ENSGT00530000063113.A
Ryukyu mouse	MODERN SPECIES	15	C2cd5 (MGP_CAROLIEiJ_G0029040)	Etnk1 (MGP_CAROLIEiJ_G0029041)	Sox5 (MGP_CAROLIEiJ_G0029042)	Bcat1 (MGP_CAROLIEiJ_G0029043)	Irag2 (MGP_CAROLIEiJ_G0029044)	Casc1 (MGP_CAROLIEiJ_G0029045)	Etfrf1 (MGP_CAROLIEiJ_G0029046)	Kras (MGP_CAROLIEiJ_G0029047)	Lmntd1 (MGP_CAROLIEiJ_G0029048)	MGP_CAROLIEiJ_G0029049	Rassf8 (MGP_CAROLIEiJ_G0029050)	Bhlhe41 (MGP_CAROLIEiJ_G0029051)	Sspn (MGP_CAROLIEiJ_G0029052) #18	Itpr2 (MGP_CAROLIEiJ_G0029053) #19	Ints13 (MGP_CAROLIEiJ_G0029054) #20	Fgfr1op2 (MGP_CAROLIEiJ_G0029055) #22	Tm7sf3 (MGP_CAROLIEiJ_G0029056) #23	Med21 (MGP_CAROLIEiJ_G0029057) #24	Stk38l (MGP_CAROLIEiJ_G0029058) #27	Arntl2 (MGP_CAROLIEiJ_G0029059) #28	Smco2 (MGP_CAROLIEiJ_G0029060) #29	Ppfibp1 (MGP_CAROLIEiJ_G0029061) #30	1700034J05Rik (MGP_CAROLIEiJ_G0029062) #25	Rep15 (MGP_CAROLIEiJ_G0029063) #31	Mrps35 (MGP_CAROLIEiJ_G0029064) #32	Mansc4 (MGP_CAROLIEiJ_G0029065) #33	Klhl42 (MGP_CAROLIEiJ_G0029066) #34	Pthlh (MGP_CAROLIEiJ_G0029067)	Ccdc91 (MGP_CAROLIEiJ_G0029068)	Far2 (MGP_CAROLIEiJ_G0029069)	Ergic2 (MGP_CAROLIEiJ_G0029070)
Mus_B	ANCESTRAL SPECIES	15	ENSGT01030000234535.D	ENSGT00390000000212	ENSGT00950000182939.b.a.b	ENSGT00940000156122	ENSGT00390000009532.A.d.a	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182839.B.a.a	ENSGT00940000161014	ENSGT00390000007747 #18	ENSGT00940000156039 #19	ENSGT00390000002793 #20	ENSGT00390000018003.b #22	ENSGT00390000008702 #23	ENSGT00390000014557 #24	ENSGT00940000153544.b #27	ENSGT00940000160423 #28	ENSGT00940000153380.A #29	ENSGT00390000018322 #25	ENSGT01050000244951.a.a #30	ENSGT00390000005178 #31	ENSGT00390000003443 #32	ENSGT00940000153377.C #33	ENSGT00940000160124 #34	ENSGT00390000004933	ENSGT00390000015899	ENSGT00390000006367.c	ENSGT00530000063113.A
Mus_C	ANCESTRAL SPECIES	29	ENSGT01030000234535.D	ENSGT00390000000212	ENSGT00950000182939.b.a.b	ENSGT00940000156122	ENSGT00390000009532.A.d.a	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182839.B.a.a	ENSGT00940000161014	ENSGT00390000007747 #18	ENSGT00940000156039 #19	ENSGT00390000002793 #20	ENSGT00390000018003.b #22	ENSGT00390000008702 #23	ENSGT00390000014557 #24	ENSGT00940000153544.b #27	ENSGT00940000160423 #28	ENSGT00940000153380.A #29	ENSGT00390000018322 #25	ENSGT01050000244951.a.a #30	ENSGT00390000005178 #31	ENSGT00390000003443 #32	ENSGT00940000153377.C #33	ENSGT00940000160124 #34	ENSGT00390000004933	ENSGT00390000015899	ENSGT00390000006367.c	ENSGT00530000063113.A
spretus	MODERN SPECIES	15	C2cd5 (MGP_SPRETEiJ_G0030095)	Etnk1 (MGP_SPRETEiJ_G0030096)	Sox5 (MGP_SPRETEiJ_G0030097)	Bcat1 (MGP_SPRETEiJ_G0030098)	Irag2 (MGP_SPRETEiJ_G0030099)	Casc1 (MGP_SPRETEiJ_G0030100)	Etfrf1 (MGP_SPRETEiJ_G0030101)	Kras (MGP_SPRETEiJ_G0030102)	Lmntd1 (MGP_SPRETEiJ_G0030103)	MGP_SPRETEiJ_G0030104	Rassf8 (MGP_SPRETEiJ_G0030105)	Bhlhe41 (MGP_SPRETEiJ_G0030106)	Sspn (MGP_SPRETEiJ_G0030107) #18	Itpr2 (MGP_SPRETEiJ_G0030108) #19	Ints13 (MGP_SPRETEiJ_G0030109) #20	Fgfr1op2 (MGP_SPRETEiJ_G0030110) #22	Tm7sf3 (MGP_SPRETEiJ_G0030111) #23	Med21 (MGP_SPRETEiJ_G0030112) #24	Stk38l (MGP_SPRETEiJ_G0030113) #27	MGP_SPRETEiJ_G0030114 #28	MGP_SPRETEiJ_G0030115 #29	Ppfibp1 (MGP_SPRETEiJ_G0030116) #30	1700034J05Rik (MGP_SPRETEiJ_G0030117) #25	Rep15 (MGP_SPRETEiJ_G0030118) #31	Mrps35 (MGP_SPRETEiJ_G0030119) #32	Mansc4 (MGP_SPRETEiJ_G0030120) #33	Klhl42 (MGP_SPRETEiJ_G0030121) #34	Pthlh (MGP_SPRETEiJ_G0030122)	Ccdc91 (MGP_SPRETEiJ_G0030123)	Far2 (MGP_SPRETEiJ_G0030124)	Ergic2 (MGP_SPRETEiJ_G0030125)
Steppe mouse	MODERN SPECIES	3307					Bcat1 (ENSMSIG00000015197)	Irag2 (ENSMSIG00000015111)	Etfrf1 (ENSMSIG00000015086)	Casc1 (ENSMSIG00000014840)	Lmntd1 (ENSMSIG00000014721)	ENSMSIG00000014710	Rassf8 (ENSMSIG00000014654)	Bhlhe41 (ENSMSIG00000014616)	Sspn (ENSMSIG00000014591) #18	Itpr2 (ENSMSIG00000014319) #19	Ints13 (ENSMSIG00000014265) #20	Fgfr1op2 (ENSMSIG00000014213) #22	Tm7sf3 (ENSMSIG00000014187) #23	Med21 (ENSMSIG00000014163) #24	Stk38l (ENSMSIG00000014111) #27	ENSMSIG00000014103	Arntl2 (ENSMSIG00000013962) #28	ENSMSIG00000013947 #29	1700034J05Rik (ENSMSIG00000013928) #25	Ppfibp1 (ENSMSIG00000013677) #30	Rep15 (ENSMSIG00000013652) #31	Mrps35 (ENSMSIG00000013626) #32	Mansc4 (ENSMSIG00000013606) #33	ENSMSIG00000013586 #34	Pthlh (ENSMSIG00000013526)	ENSMSIG00000013505	Ccdc91 (ENSMSIG00000013458)
Mouse	MODERN SPECIES	15	C2cd5 (ENSMUSG00000030279)	Etnk1 (ENSMUSG00000030275)	Sox5 (ENSMUSG00000041540)	Bcat1 (ENSMUSG00000030268)	Irag2 (ENSMUSG00000030263)	Casc1 (ENSMUSG00000043541)	Etfrf1 (ENSMUSG00000040370)	Kras (ENSMUSG00000030265)	Lmntd1 (ENSMUSG00000054966)	Tuba3b (ENSMUSG00000067338)	Rassf8 (ENSMUSG00000030259)	Bhlhe41 (ENSMUSG00000030256)	Sspn (ENSMUSG00000030255) #18	Itpr2 (ENSMUSG00000030287) #19	Ints13 (ENSMUSG00000040250) #20	Fgfr1op2 (ENSMUSG00000040242) #22	Tm7sf3 (ENSMUSG00000040234) #23	Med21 (ENSMUSG00000030291) #24	Stk38l (ENSMUSG00000001630) #27	Arntl2 (ENSMUSG00000040187) #28	Smco2 (ENSMUSG00000030292) #29	Ppfibp1 (ENSMUSG00000016487) #30	1700034J05Rik (ENSMUSG00000040163) #25	Rep15 (ENSMUSG00000040121) #31	Mrps35 (ENSMUSG00000040112) #32	Mansc4 (ENSMUSG00000072662) #33	Klhl42 (ENSMUSG00000040102) #34	Pthlh (ENSMUSG00000048776)	Ccdc91 (ENSMUSG00000030301)	Far2 (ENSMUSG00000030303)	Ergic2 (ENSMUSG00000030304)
Shrew mouse	MODERN SPECIES	11	Etnk1 (MGP_PahariEiJ_G0022802)	Sox5 (MGP_PahariEiJ_G0022803)	Bcat1 (MGP_PahariEiJ_G0022804)	MGP_PahariEiJ_G0022805	Casc1 (MGP_PahariEiJ_G0022806)	Etfrf1 (MGP_PahariEiJ_G0022807)	Kras (MGP_PahariEiJ_G0022808)	Lmntd1 (MGP_PahariEiJ_G0022809)	Tuba3b (MGP_PahariEiJ_G0022810)	MGP_PahariEiJ_G0022811	Rassf8 (MGP_PahariEiJ_G0022812)	Bhlhe41 (MGP_PahariEiJ_G0022813)	Sspn (MGP_PahariEiJ_G0022814) #18	Itpr2 (MGP_PahariEiJ_G0022815) #19	Ints13 (MGP_PahariEiJ_G0022816) #20	MGP_PahariEiJ_G0022817 #22	Tm7sf3 (MGP_PahariEiJ_G0022818) #23	Med21 (MGP_PahariEiJ_G0022819) #24	Stk38l (MGP_PahariEiJ_G0022820) #27	Smco2 (MGP_PahariEiJ_G0022821) #29	Ppfibp1 (MGP_PahariEiJ_G0022822) #30	1700034J05Rik (MGP_PahariEiJ_G0022823) #25	Rep15 (MGP_PahariEiJ_G0022824) #31	MGP_PahariEiJ_G0022825 #32	Mansc4 (MGP_PahariEiJ_G0022826) #33	Klhl42 (MGP_PahariEiJ_G0022827) #34	Pthlh (MGP_PahariEiJ_G0022828)	Ccdc91 (MGP_PahariEiJ_G0022829)	Far2 (MGP_PahariEiJ_G0022830)	Ergic2 (MGP_PahariEiJ_G0022831)	Tmtc1 (MGP_PahariEiJ_G0022832)
Rat	MODERN SPECIES	14	ENSRNOG00000063999	Sox5 (ENSRNOG00000027869)	AABR07062466.1 (ENSRNOG00000033855)	Bcat1 (ENSRNOG00000015514)	Irag2 (ENSRNOG00000029308)	Dnai7 (ENSRNOG00000027630)	Etfrf1 (ENSRNOG00000063524)	ENSRNOG00000069406	Lmntd1 (ENSRNOG00000015910)	Tuba3a (ENSRNOG00000032967)	Rassf8 (ENSRNOG00000015986)	Bhlhe41 (ENSRNOG00000048961)	Sspn (ENSRNOG00000001807) #18	Itpr2 (ENSRNOG00000001804) #19	Ints13 (ENSRNOG00000001808) #20	Fgfr1op2 (ENSRNOG00000001811) #22	Tm7sf3 (ENSRNOG00000001817) #23	Med21 (ENSRNOG00000001820) #24	Stk38l (ENSRNOG00000001828) #27	Bmal2 (ENSRNOG00000001830) #28	Smco2 (ENSRNOG00000026883) #29	Ppfibp1 (ENSRNOG00000031709) #30	C4h12orf71 (ENSRNOG00000026864) #25	Rep15 (ENSRNOG00000001840) #31	Mrps35 (ENSRNOG00000001842) #32	Mansc4 (ENSRNOG00000036925) #33	Klhl42 (ENSRNOG00000001844) #34	AABR07062539.1 (ENSRNOG00000051667)	Pthlh (ENSRNOG00000069267)	Ccdc91 (ENSRNOG00000001847)	ENSRNOG00000064845
Upper Galilee mountains blind mole rat	DUPLICATION
Upper Galilee mountains blind mole rat	MODERN SPECIES	1351				Hpse (ENSNGAG00000018587)	Coq2 (ENSNGAG00000000054)	Plac8 (ENSNGAG00000000532)	Cops4 (ENSNGAG00000005820)	ENSNGAG00000006175	Lin54 (ENSNGAG00000010863)	ENSNGAG00000011892	ENSNGAG00000014734	Tmem150c (ENSNGAG00000014973)	Enoph1 (ENSNGAG00000015500)	Hnrnpdl (ENSNGAG00000015740)	Ints13 (ENSNGAG00000016180) #20	ENSNGAG00000016575 #22	Tm7sf3 (ENSNGAG00000018407) #23	Med21 (ENSNGAG00000000342) #24	Stk38l (ENSNGAG00000010154) #27	Arntl2 (ENSNGAG00000018456) #28	Smco2 (ENSNGAG00000010804) #29	ENSNGAG00000009115	ENSNGAG00000009391 #30	ENSNGAG00000010515 #30	Rep15 (ENSNGAG00000014414) #31	Mrps35 (ENSNGAG00000000169) #32	Mansc4 (ENSNGAG00000000524) #33	Klhl42 (ENSNGAG00000000726) #34	Pthlh (ENSNGAG00000001395)	Ccdc91 (ENSNGAG00000007042)
Upper Galilee mountains blind mole rat	MODERN SPECIES	639															ENSNGAG00000006736	ENSNGAG00000015733 #22
Lesser Egyptian jerboa	DUPLICATION
Lesser Egyptian jerboa	MODERN SPECIES	111	C2cd5 (ENSJJAG00000022968)	Etnk1 (ENSJJAG00000007821)	Sox5 (ENSJJAG00000011054)	Bcat1 (ENSJJAG00000012001)	Irag2 (ENSJJAG00000012617)	Casc1 (ENSJJAG00000013952)	Etfrf1 (ENSJJAG00000015972)	Kras (ENSJJAG00000016513)	Tuba3b (ENSJJAG00000017028)	ENSJJAG00000013495	ENSJJAG00000017775	ENSJJAG00000017871	Sspn (ENSJJAG00000018160) #18	Itpr2 (ENSJJAG00000000125) #19	Ints13 (ENSJJAG00000013125) #20	ENSJJAG00000014242 #22	Tm7sf3 (ENSJJAG00000014434) #23	ENSJJAG00000014822	Smco3 (ENSJJAG00000013764)	Art4 (ENSJJAG00000015150)	Mgp (ENSJJAG00000015199)	Erp27 (ENSJJAG00000015603)	Arhgdib (ENSJJAG00000015854)	Pde6h (ENSJJAG00000016082)	Rerg (ENSJJAG00000016255)	Ptpro (ENSJJAG00000018100)	Eps8 (ENSJJAG00000015869)	Strap (ENSJJAG00000017293)	Dera (ENSJJAG00000017995)	Slc15a5 (ENSJJAG00000018936)	Mgst1 (ENSJJAG00000019123)
Lesser Egyptian jerboa	MODERN SPECIES	49	Mturn (ENSJJAG00000019476)	ENSJJAG00000018369	Nod1 (ENSJJAG00000010878)	Ggct (ENSJJAG00000014364)	Gars (ENSJJAG00000022474)	Crhr2 (ENSJJAG00000023470)	Mindy4 (ENSJJAG00000024172)	Aqp1 (ENSJJAG00000017823)	Ghrhr (ENSJJAG00000007770)	Adcyap1r1 (ENSJJAG00000016559)	Neurod6 (ENSJJAG00000018349)	ENSJJAG00000000900	ENSJJAG00000012458	Ppp1r17 (ENSJJAG00000015397)	Pde1c (ENSJJAG00000023334)	ENSJJAG00000014802 #22	Lsm5 (ENSJJAG00000012145)	ENSJJAG00000020256	Kbtbd2 (ENSJJAG00000017181)	ENSJJAG00000018184	ENSJJAG00000000509	ENSJJAG00000009194	Fkbp9 (ENSJJAG00000010780)	ENSJJAG00000024110	ENSJJAG00000010711	Mustn1 (ENSJJAG00000012139)	Stimate (ENSJJAG00000012243)	Sfmbt1 (ENSJJAG00000017138)	Rft1 (ENSJJAG00000022919)	ENSJJAG00000020100	Prkcd (ENSJJAG00000018835)
Kangaroo rat	DUPLICATION
Kangaroo rat	MODERN SPECIES	488																ENSDORG00000007729 #22	ENSDORG00000014647	ENSDORG00000025328	ENSDORG00000027433	Syt10 (ENSDORG00000000019)	ENSDORG00000009982	Alg10b (ENSDORG00000003470)	Cpne8 (ENSDORG00000012517)	Kif21a (ENSDORG00000002550)	Abcd2 (ENSDORG00000003158)	Slc2a13 (ENSDORG00000027685)
Kangaroo rat	MODERN SPECIES	616															Ints13 (ENSDORG00000012904) #20	ENSDORG00000024769 #22	ENSDORG00000024109
Rodentia_A	ANCESTRAL SPECIES	4	ENSGT01030000234535.D	ENSGT00390000000212	ENSGT00950000182939.b.a.b	ENSGT00940000156122	ENSGT00390000009532.A.d.a	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182839.B.a.a	ENSGT00940000161014	ENSGT00390000007747 #18	ENSGT00940000156039 #19	ENSGT00390000002793 #20	ENSGT00390000018003.b #22	ENSGT00970000193562	ENSGT00390000008702 #23	ENSGT00390000014557 #24	ENSGT00940000153544.b #27	ENSGT00940000160423 #28	ENSGT00940000153380.A #29	ENSGT00390000018322 #25	ENSGT01050000244951.a.a #30	ENSGT00390000005178 #31	ENSGT00390000003443 #32	ENSGT00940000153377.C #33	ENSGT00940000160124 #34	ENSGT00390000004933	ENSGT00390000015899	ENSGT00390000006367.c
Hystricomorpha	ANCESTRAL SPECIES	13	ENSGT00390000000212	ENSGT00950000182939.b.a.b	ENSGT00940000156122	ENSGT00390000009532.A.d.a	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182839.B.a.a	ENSGT00940000161014	ENSGT00390000007747 #18	ENSGT00940000156039 #19	ENSGT00390000002793 #20	ENSGT00970000193562	ENSGT00390000018003.b #22	ENSGT00390000008702 #23	ENSGT00390000014557 #24	ENSGT01030000234599.a.a.a.a.j.a	ENSGT01030000234599.a.a.a.a.i	ENSGT00940000157534	ENSGT01030000234599.a.a.b.k.b.a	ENSGT01030000234599.a.a.b.l	ENSGT00940000155632	ENSGT00530000064086	ENSGT00640000091519	ENSGT00390000002667.w.b	ENSGT01050000244893.c.a.b	ENSGT00870000136549	ENSGT00940000159653	ENSGT00510000048561
Naked mole-rat female	DUPLICATION
Naked mole-rat female	MODERN SPECIES	24	ENSHGLG00000039682	SOX5 (ENSHGLG00000016643)	ENSHGLG00000044797	LRMP (ENSHGLG00000017644)	DNAI7 (ENSHGLG00000017827)	ENSHGLG00000042649	KRAS (ENSHGLG00000008775)	LMNTD1 (ENSHGLG00000005502)	ENSHGLG00000034920	RASSF8 (ENSHGLG00000036200)	BHLHE41 (ENSHGLG00000036794)	SSPN (ENSHGLG00000041411) #18	ITPR2 (ENSHGLG00000018135) #19	INTS13 (ENSHGLG00000010176) #20	ENSHGLG00000041655	ENSHGLG00000044032 #22	ENSHGLG00000013061 #23	ENSHGLG00000013417 #24	ENSHGLG00000017237	ENSHGLG00000016022	ENSHGLG00000015154	RBFOX2 (ENSHGLG00000046566)	ENSHGLG00000037416	ENSHGLG00000016798	ENSHGLG00000037252	ENSHGLG00000040589	ENSHGLG00000032964	TXN2 (ENSHGLG00000016755)	FOXRED2 (ENSHGLG00000012859)	ENSHGLG00000016422	CACNG2 (ENSHGLG00000046431)
Naked mole-rat female	MODERN SPECIES	1	GPT (ENSHGLG00000016310)	MFSD3 (ENSHGLG00000047371)	RECQL4 (ENSHGLG00000015925)	LRRC14 (ENSHGLG00000040950)	LRRC24 (ENSHGLG00000009883)	C8orf82 (ENSHGLG00000009700)	ARHGAP39 (ENSHGLG00000007635)	ENSHGLG00000012998	ENSHGLG00000005532	ENSHGLG00000009858	RPL8 (ENSHGLG00000039508)	ENSHGLG00000014023	ENSHGLG00000038883	ENSHGLG00000016936	ENSHGLG00000043250	ENSHGLG00000048968 #22	ENSHGLG00000046285	ENSHGLG00000038076	ENSHGLG00000015120	ENSHGLG00000016312	ENSHGLG00000017220	ENSHGLG00000010206	FBXL14 (ENSHGLG00000018846)	WNT5B (ENSHGLG00000018867)	ADIPOR2 (ENSHGLG00000018584)	CACNA2D4 (ENSHGLG00000009530)	LRTM2 (ENSHGLG00000015685)	DCP1B (ENSHGLG00000019233)	ENSHGLG00000015597	ENSHGLG00000037716	ENSHGLG00000020936
Hystricomorpha_a	ANCESTRAL SPECIES	6	ENSGT01030000234535.D	ENSGT00390000000212	ENSGT00950000182939.b.a.b	ENSGT00940000156122	ENSGT00390000009532.A.d.a	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182839.B.a.a	ENSGT00940000161014	ENSGT00390000007747 #18	ENSGT00940000156039 #19	ENSGT00390000002793 #20	ENSGT00390000018003.b #22	ENSGT00390000008702 #23	ENSGT00390000014557 #24	ENSGT01030000234599.a.a.a.a.j.a	ENSGT01030000234599.a.a.a.a.i	ENSGT00940000157534	ENSGT01030000234599.a.a.b.k.b.a	ENSGT01030000234599.a.a.b.l	ENSGT00940000155632	ENSGT00530000064086	ENSGT00640000091519	ENSGT00390000002667.w.b	ENSGT01050000244893.c.a.b	ENSGT00870000136549	ENSGT00940000159653	ENSGT00510000048561
Guinea pig	MODERN SPECIES	28	ST8SIA1 (ENSCPOG00000037768)	C2CD5 (ENSCPOG00000002611)	ETNK1 (ENSCPOG00000007574)	SOX5 (ENSCPOG00000015686)	BCAT1 (ENSCPOG00000003203)	IRAG2 (ENSCPOG00000005690)	DNAI7 (ENSCPOG00000005699)	ETFRF1 (ENSCPOG00000010713)	KRAS (ENSCPOG00000030290)	RASSF8 (ENSCPOG00000033532)	ENSCPOG00000025122	SSPN (ENSCPOG00000033259) #18	ITPR2 (ENSCPOG00000012462) #19	ENSCPOG00000021778	INTS13 (ENSCPOG00000014999) #20	FGFR1OP2 (ENSCPOG00000030323) #22	TM7SF3 (ENSCPOG00000015004) #23	MED21 (ENSCPOG00000015007) #24	ENSCPOG00000037222	ENSCPOG00000024603	RBFOX2 (ENSCPOG00000022180)	ENSCPOG00000000348	ENSCPOG00000040055	ENSCPOG00000038184	ENSCPOG00000010115	MYH9 (ENSCPOG00000000346)	TXN2 (ENSCPOG00000035993)	EIF3D (ENSCPOG00000002529)	FOXRED2 (ENSCPOG00000040491)	CACNG2 (ENSCPOG00000002533)	IFT27 (ENSCPOG00000021807)
Hystricomorpha_b	ANCESTRAL SPECIES	2	ENSGT01030000234535.D	ENSGT00390000000212	ENSGT00950000182939.b.a.b	ENSGT00940000156122	ENSGT00390000009532.A.d.a	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182839.B.a.a	ENSGT00940000161014	ENSGT00390000007747 #18	ENSGT00940000156039 #19	ENSGT00390000002793 #20	ENSGT00390000018003.b #22	ENSGT00390000008702 #23	ENSGT00390000014557 #24	ENSGT00940000157534	ENSGT01030000234599.a.a.b.k.b.a	ENSGT01030000234599.a.a.b.k.a	ENSGT01030000234599.a.a.b.l	ENSGT00940000155632	ENSGT00530000064086	ENSGT00640000091519	ENSGT00390000002667.w.b	ENSGT01050000244893.c.a.b	ENSGT00870000136549	ENSGT00940000159653	ENSGT00510000048561	ENSGT00510000048963
Long-tailed chinchilla	MODERN SPECIES	120	ST8SIA1 (ENSCLAG00000016736)	C2CD5 (ENSCLAG00000016952)	ETNK1 (ENSCLAG00000015907)	SOX5 (ENSCLAG00000014641)	BCAT1 (ENSCLAG00000016654)	IRAG2 (ENSCLAG00000015233)	DNAI7 (ENSCLAG00000017034)	ETFRF1 (ENSCLAG00000016238)	KRAS (ENSCLAG00000016519)	RASSF8 (ENSCLAG00000015615)	ENSCLAG00000015603	SSPN (ENSCLAG00000015681) #18	ITPR2 (ENSCLAG00000017155) #19	ENSCLAG00000016175	INTS13 (ENSCLAG00000015765) #20	FGFR1OP2 (ENSCLAG00000016939) #22	TM7SF3 (ENSCLAG00000017039) #23	MED21 (ENSCLAG00000016595) #24	RBFOX2 (ENSCLAG00000017106)	ENSCLAG00000016144	ENSCLAG00000015996	ENSCLAG00000014514	ENSCLAG00000015836	ENSCLAG00000015965	ENSCLAG00000016680	ENSCLAG00000016571	ENSCLAG00000016300	MYH9 (ENSCLAG00000015848)	TXN2 (ENSCLAG00000015616)	FOXRED2 (ENSCLAG00000016617)	EIF3D (ENSCLAG00000016545)
Degu	MODERN SPECIES	105	ETNK1 (ENSODEG00000011182)	SOX5 (ENSODEG00000011773)	ENSODEG00000010044	BCAT1 (ENSODEG00000009501)	IRAG2 (ENSODEG00000010644)	DNAI7 (ENSODEG00000009672)	KRAS (ENSODEG00000010412)	LMNTD1 (ENSODEG00000009925)	RASSF8 (ENSODEG00000010575)	BHLHE41 (ENSODEG00000013113)	SSPN (ENSODEG00000009793) #18	ENSODEG00000010077 #19	ENSODEG00000010321 #19	ENSODEG00000011680	INTS13 (ENSODEG00000010618) #20	FGFR1OP2 (ENSODEG00000010035) #22	TM7SF3 (ENSODEG00000010223) #23	ENSODEG00000010765	RBFOX2 (ENSODEG00000009937)	ENSODEG00000019846	MYH9 (ENSODEG00000011598)	ENSODEG00000011201	FOXRED2 (ENSODEG00000011573)	EIF3D (ENSODEG00000011039)	CACNG2 (ENSODEG00000011717)	IFT27 (ENSODEG00000012005)	PVALB (ENSODEG00000012198)	NCF4 (ENSODEG00000011148)	CSF2RB (ENSODEG00000010752)	TEX33 (ENSODEG00000010459)	TST (ENSODEG00000012577)
Sciuridae	ANCESTRAL SPECIES	15	ENSGT01030000234535.D	ENSGT00390000000212	ENSGT00950000182939.b.a.b.f	ENSGT00940000156122	ENSGT00390000009532.A.d.a	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182839.B.a.a	ENSGT00940000161014	ENSGT00390000007747 #18	ENSGT00940000156039 #19	ENSGT00390000002793 #20	ENSGT00390000018003.b #22	ENSGT00970000193562	ENSGT00390000008702 #23	ENSGT00390000014557 #24	ENSGT00940000153544.b #27	ENSGT00940000160423 #28	ENSGT00940000153380.A #29	ENSGT00390000018322.b #25	ENSGT01050000244951.a.a #30	ENSGT00390000005178 #31	ENSGT00390000003443 #32	ENSGT00940000153377.C #33	ENSGT00940000160124 #34	ENSGT00390000004933	ENSGT00390000015899	ENSGT00390000006367.c
Eurasian red squirrel	MODERN SPECIES	14	ETNK1 (ENSSVLG00005011233)	ENSSVLG00005011366	SOX5 (ENSSVLG00005011483)	BCAT1 (ENSSVLG00005012012)	ENSSVLG00005012187	DNAI7 (ENSSVLG00005012568)	ETFRF1 (ENSSVLG00005013055)	KRAS (ENSSVLG00005013177)	LMNTD1 (ENSSVLG00005013266)	RASSF8 (ENSSVLG00005013368)	ENSSVLG00005013521	BHLHE41 (ENSSVLG00005013568)	SSPN (ENSSVLG00005013638) #18	ITPR2 (ENSSVLG00005014004) #19	INTS13 (ENSSVLG00005014650) #20	FGFR1OP2 (ENSSVLG00005014699) #22	ENSSVLG00005014788	TM7SF3 (ENSSVLG00005014809) #23	MED21 (ENSSVLG00005014838) #24	STK38L (ENSSVLG00005014875) #27	BMAL2 (ENSSVLG00005015014) #28	SMCO2 (ENSSVLG00005015897) #29	ENSSVLG00005016025	ENSSVLG00005016042 #25	PPFIBP1 (ENSSVLG00005016094) #30	REP15 (ENSSVLG00005016211) #31	MRPS35 (ENSSVLG00005016226) #32	MANSC4 (ENSSVLG00005016308) #33	KLHL42 (ENSSVLG00005016344) #34	ENSSVLG00005016361	PTHLH (ENSSVLG00005016398)
Marmotini	ANCESTRAL SPECIES	19	ENSGT01030000234535.D	ENSGT00390000000212	ENSGT00950000182939.b.a.b.f	ENSGT00940000156122	ENSGT00390000009532.A.d.a	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182839.B.a.a	ENSGT00940000161014	ENSGT00390000007747 #18	ENSGT00940000156039 #19	ENSGT00390000002793 #20	ENSGT00390000018003.b #22	ENSGT00970000193562	ENSGT00390000008702 #23	ENSGT00390000014557.o #24	ENSGT00940000153544.b #27	ENSGT00940000160423 #28	ENSGT00940000153380.A #29	ENSGT00950000182907.a.a.j	ENSGT00390000018322.b #25	ENSGT01050000244951.a.a #30	ENSGT00390000005178 #31	ENSGT00390000003443 #32	ENSGT00940000153377.C #33	ENSGT00940000160124 #34	ENSGT00390000004933	ENSGT00390000015899
Alpin marmot	MODERN SPECIES	52	C2CD5 (ENSMMMG00000017591)	ETNK1 (ENSMMMG00000017995)	ENSMMMG00000018020	SOX5 (ENSMMMG00000018035)	BCAT1 (ENSMMMG00000018101)	IRAG2 (ENSMMMG00000018125)	DNAI7 (ENSMMMG00000018140)	ETFRF1 (ENSMMMG00000018182)	KRAS (ENSMMMG00000018194)	LMNTD1 (ENSMMMG00000018217)	ENSMMMG00000018222	ENSMMMG00000018244	SSPN (ENSMMMG00000018260) #18	ITPR2 (ENSMMMG00000018276) #19	INTS13 (ENSMMMG00000018473) #20	FGFR1OP2 (ENSMMMG00000018478) #22	ENSMMMG00000018484	TM7SF3 (ENSMMMG00000018490) #23	MED21 (ENSMMMG00000018499) #24
Marmotini_b	ANCESTRAL SPECIES	57	ENSGT00390000000212	ENSGT00950000182939.b.a.b.f	ENSGT00940000156122	ENSGT00390000009532.A.d.a	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182839.B.a.a	ENSGT00940000161014	ENSGT00390000007747 #18	ENSGT00940000156039 #19	ENSGT00390000002793 #20	ENSGT00970000193562	ENSGT00390000018003.b #22	ENSGT00390000008702 #23	ENSGT00390000014557.o #24	ENSGT00940000153544.b #27	ENSGT00940000160423 #28	ENSGT00940000153380.A #29	ENSGT00390000018322.b #25
Arctic ground squirrel	MODERN SPECIES	100	ENSUPAG00010016617	ETNK1 (ENSUPAG00010016592)	SOX5 (ENSUPAG00010016337)	BCAT1 (ENSUPAG00010016309)	IRAG2 (ENSUPAG00010016042)	DNAI7 (ENSUPAG00010015919)	ETFRF1 (ENSUPAG00010015915)	KRAS (ENSUPAG00010015896)	ENSUPAG00010015875	RASSF8 (ENSUPAG00010015858)	BHLHE41 (ENSUPAG00010015854)	SSPN (ENSUPAG00010015841) #18	ITPR2 (ENSUPAG00010015598) #19	INTS13 (ENSUPAG00010015517) #20	ENSUPAG00010015508	FGFR1OP2 (ENSUPAG00010015479) #22	TM7SF3 (ENSUPAG00010015455) #23	ENSUPAG00010015431 #24	ENSUPAG00010015410 #25	STK38L (ENSUPAG00010015362) #27	BMAL2 (ENSUPAG00010015267) #28	SMCO2 (ENSUPAG00010015239) #29	ENSUPAG00010015232 #25
Squirrel	MODERN SPECIES	148	C2CD5 (ENSSTOG00000004906)	ETNK1 (ENSSTOG00000008379)	SOX5 (ENSSTOG00000000100)	ENSSTOG00000004938	IRAG2 (ENSSTOG00000026727)	DNAI7 (ENSSTOG00000009509)	ETFRF1 (ENSSTOG00000024945)	KRAS (ENSSTOG00000009530)	ENSSTOG00000026226	LMNTD1 (ENSSTOG00000005098)	RASSF8 (ENSSTOG00000022027)	ENSSTOG00000021007	SSPN (ENSSTOG00000021227) #18	ITPR2 (ENSSTOG00000015423) #19	ENSSTOG00000025972 #20	FGFR1OP2 (ENSSTOG00000008628) #22	TM7SF3 (ENSSTOG00000020883) #23	ENSSTOG00000008391 #24	STK38L (ENSSTOG00000001333) #27	BMAL2 (ENSSTOG00000001344) #28	ENSSTOG00000006052 #29	ENSSTOG00000006079
Laurasiatheria	ANCESTRAL SPECIES	6	ENSGT00390000000212	ENSGT00950000182939.b.a.b	ENSGT00940000156122	ENSGT00390000009532.A.d.a	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182839.B.a.a	ENSGT00940000161014	ENSGT00390000007747 #18	ENSGT00940000156039 #19	ENSGT00940000167397.b	ENSGT00390000002793 #20	ENSGT00390000018003.b #22	ENSGT00970000193562	ENSGT00390000008702 #23	ENSGT00390000014557 #24	ENSGT00940000153544.b #27	ENSGT00940000169031 #26	ENSGT01050000244951.a.a #30	ENSGT00940000160423 #28	ENSGT00940000153380.A #29	ENSGT00390000018322 #25	ENSGT00390000005178 #31	ENSGT00390000003443 #32	ENSGT00940000153377.C #33	ENSGT00940000160124 #34	ENSGT00390000004933	ENSGT00390000015899
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00390000018003.b #22
Hedgehog	MODERN SPECIES	1391																FGFR1OP2 (ENSEEUG00000004313) #22
Common shrew	MODERN SPECIES	907																FGFR1OP2 (ENSSARG00000009519) #22
Laurasiatheria_a	ANCESTRAL SPECIES	6	ENSGT00390000000212	ENSGT00950000182939.b.a.b	ENSGT00940000156122	ENSGT00390000009532.A.d.a	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182839.B.a.a	ENSGT00940000161014	ENSGT00390000007747 #18	ENSGT00940000156039 #19	ENSGT00940000167397.b	ENSGT00390000002793 #20	ENSGT00390000018003.b #22	ENSGT00970000193562	ENSGT00390000008702 #23	ENSGT00390000014557 #24	ENSGT00940000153544.b #27	ENSGT00940000160423 #28	ENSGT00940000153380.A #29	ENSGT00390000018322 #25	ENSGT01050000244951.a.a #30	ENSGT00390000005178 #31	ENSGT00390000003443 #32	ENSGT00940000153377.C #33	ENSGT00940000160124 #34	ENSGT00390000004933	ENSGT00390000015899	ENSGT00390000006367.c
Artiodactyla	ANCESTRAL SPECIES	6	ENSGT01030000234535.D	ENSGT00390000000212	ENSGT00950000182939.b.a.b	ENSGT00940000156122	ENSGT00390000009532.A.d.a	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182839.B.a.a	ENSGT00940000161014	ENSGT00390000007747 #18	ENSGT00940000156039 #19	ENSGT00390000002793 #20	ENSGT00390000018003.b #22	ENSGT00970000193562	ENSGT00390000008702 #23	ENSGT00390000014557 #24	ENSGT00940000153544.b #27	ENSGT00940000160423 #28	ENSGT00940000153380.A #29	ENSGT00390000018322 #25	ENSGT01050000244951.a.a #30	ENSGT00390000005178 #31	ENSGT00390000003443 #32	ENSGT00940000153377.C #33	ENSGT00940000160124 #34	ENSGT00390000004933	ENSGT00390000015899	ENSGT00390000006367.c
Suina	ANCESTRAL SPECIES	4	ENSGT01030000234535.D	ENSGT00390000000212	ENSGT00950000182939.b.a.b	ENSGT00940000156122	ENSGT00390000009532.A.d.a	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182839.B.a.a	ENSGT00940000161014	ENSGT00390000007747 #18	ENSGT00940000156039 #19	ENSGT00390000002793 #20	ENSGT00390000018003.b #22	ENSGT00390000008702 #23	ENSGT00390000014557 #24	ENSGT00940000153544.b #27	ENSGT00940000160423 #28	ENSGT00940000153380.A #29	ENSGT00390000018322 #25	ENSGT01050000244951.a.a #30	ENSGT00390000005178 #31	ENSGT00390000003443 #32	ENSGT00940000153377.C #33	ENSGT00940000160124 #34	ENSGT00390000004933	ENSGT00390000015899	ENSGT00390000006367.c	ENSGT00530000063113.A
Pig	MODERN SPECIES	13	C2CD5 (ENSSSCG00000000570)	ETNK1 (ENSSSCG00000039397)	ENSSSCG00000051791	SOX5 (ENSSSCG00000000567)	BCAT1 (ENSSSCG00000029163)	ENSSSCG00000000563	DNAI7 (ENSSSCG00000040550)	ETFRF1 (ENSSSCG00000033843)	KRAS (ENSSSCG00000026969)	LMNTD1 (ENSSSCG00000027144)	RASSF8 (ENSSSCG00000000559)	BHLHE41 (ENSSSCG00000028552)	SSPN (ENSSSCG00000025531) #18	ITPR2 (ENSSSCG00000000555) #19	INTS13 (ENSSSCG00000030443) #20	FGFR1OP2 (ENSSSCG00000000554) #22	ENSSSCG00000036398	TM7SF3 (ENSSSCG00000000553) #23	MED21 (ENSSSCG00000041972) #24	ENSSSCG00000042702	STK38L (ENSSSCG00000022288) #27	BMAL2 (ENSSSCG00000000551) #28	SMCO2 (ENSSSCG00000000550) #29	PPFIBP1 (ENSSSCG00000000549) #30	MRPS35 (ENSSSCG00000000547) #31	MANSC4 (ENSSSCG00000053091) #33	KLHL42 (ENSSSCG00000000545) #34	PTHLH (ENSSSCG00000036893)	ENSSSCG00000045661	CCDC91 (ENSSSCG00000024232)	FAR2 (ENSSSCG00000000541)
Chacoan peccary	MODERN SPECIES	901	ST8SIA1 (ENSCWAG00000019183)	C2CD5 (ENSCWAG00000019218)	ETNK1 (ENSCWAG00000019545)	SOX5 (ENSCWAG00000019638)	BCAT1 (ENSCWAG00000019827)	ENSCWAG00000019994	DNAI7 (ENSCWAG00000020143)	ETFRF1 (ENSCWAG00000020390)	KRAS (ENSCWAG00000020412)	LMNTD1 (ENSCWAG00000020426)	RASSF8 (ENSCWAG00000020442)	BHLHE41 (ENSCWAG00000020451)	SSPN (ENSCWAG00000020468) #18	ITPR2 (ENSCWAG00000020490) #19	INTS13 (ENSCWAG00000020514) #20	FGFR1OP2 (ENSCWAG00000020531) #22	TM7SF3 (ENSCWAG00000020561) #23	MED21 (ENSCWAG00000020588) #24	STK38L (ENSCWAG00000020594) #27	SLC35E3 (ENSCWAG00000020603)	NUP107 (ENSCWAG00000020624)	RAP1B (ENSCWAG00000020716)	MDM1 (ENSCWAG00000020798)	IL22 (ENSCWAG00000020919)	IL26 (ENSCWAG00000020933)	IFNG (ENSCWAG00000020940)	DYRK2 (ENSCWAG00000020949)	CAND1 (ENSCWAG00000020959)	GRIP1 (ENSCWAG00000020998)	HELB (ENSCWAG00000003932)	IRAK3 (ENSCWAG00000004056)
Artiodactyla_a	ANCESTRAL SPECIES	5	ENSGT01030000234535.D	ENSGT00390000000212	ENSGT00950000182939.b.a.b	ENSGT00940000156122	ENSGT00390000009532.A.d.a	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182839.B.a.a	ENSGT00940000161014	ENSGT00390000007747 #18	ENSGT00940000156039 #19	ENSGT00390000002793 #20	ENSGT00390000018003.b #22	ENSGT00970000193562	ENSGT00390000008702 #23	ENSGT00390000014557 #24	ENSGT00940000153544.b #27	ENSGT00940000160423 #28	ENSGT00940000153380.A #29	ENSGT00390000018322 #25	ENSGT01050000244951.a.a #30	ENSGT00390000005178 #31	ENSGT00390000003443 #32	ENSGT00940000153377.C #33	ENSGT00940000160124 #34	ENSGT00390000004933	ENSGT00390000015899	ENSGT00390000006367.c
Camelidae	ANCESTRAL SPECIES	17	ENSGT01030000234535.D	ENSGT00390000000212	ENSGT00950000182939.b.a.b	ENSGT00940000156122	ENSGT00390000009532.A.d.a	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182839.B.a.a	ENSGT00940000161014	ENSGT00390000007747 #18	ENSGT00940000156039 #19	ENSGT00390000002793 #20	ENSGT00390000018003.b #22	ENSGT00390000008702 #23	ENSGT00390000014557 #24	ENSGT00940000153544.b #27	ENSGT00940000160423 #28	ENSGT00940000153380.A #29	ENSGT01050000244951.a.a #30	ENSGT00390000018322 #25	ENSGT00390000005178 #31	ENSGT00390000003443 #32	ENSGT00940000153377.C #33	ENSGT00940000160124 #34	ENSGT00390000004933	ENSGT00390000015899.g	ENSGT00390000006367.c	ENSGT00530000063113.A
Alpaca	MODERN SPECIES	161													SSPN (ENSVPAG00000012153) #18	ITPR2 (ENSVPAG00000012154) #19	INTS13 (ENSVPAG00000012162) #20	FGFR1OP2 (ENSVPAG00000012163) #22	TM7SF3 (ENSVPAG00000012164) #23	MED21 (ENSVPAG00000012165) #24	STK38L (ENSVPAG00000012166) #27	BMAL2 (ENSVPAG00000012169) #28	ENSVPAG00000012170 #29	PPFIBP1 (ENSVPAG00000012171) #30	MRPS35 (ENSVPAG00000012174) #32	KLHL42 (ENSVPAG00000012175) #34	PTHLH (ENSVPAG00000012176)
Arabian camel	MODERN SPECIES	27	C2CD5 (ENSCDRG00005018969)	ETNK1 (ENSCDRG00005019130)	SOX5 (ENSCDRG00005019208)	BCAT1 (ENSCDRG00005019573)	ENSCDRG00005019915	DNAI7 (ENSCDRG00005020024)	ETFRF1 (ENSCDRG00005020089)	KRAS (ENSCDRG00005020107)	LMNTD1 (ENSCDRG00005020127)	RASSF8 (ENSCDRG00005009008)	BHLHE41 (ENSCDRG00005009146)	ENSCDRG00005009191	ENSCDRG00005009209 #18	ITPR2 (ENSCDRG00005009262) #19	INTS13 (ENSCDRG00005010111) #20	FGFR1OP2 (ENSCDRG00005010190) #22	TM7SF3 (ENSCDRG00005010304) #23	MED21 (ENSCDRG00005010403) #24	STK38L (ENSCDRG00005010444) #27	BMAL2 (ENSCDRG00005010535) #28	ENSCDRG00005011128 #29	PPFIBP1 (ENSCDRG00005011235) #30	ENSCDRG00005012014 #25	ENSCDRG00005012048 #25	REP15 (ENSCDRG00005012103) #31	MRPS35 (ENSCDRG00005012120) #32	MANSC4 (ENSCDRG00005012235) #33	ENSCDRG00005012256 #34	PTHLH (ENSCDRG00005012282)	ENSCDRG00005012405	FAR2 (ENSCDRG00005012712)
Artiodactyla_b	ANCESTRAL SPECIES	5	ENSGT01030000234535.D	ENSGT00390000000212	ENSGT00950000182939.b.a.b	ENSGT00940000156122	ENSGT00390000009532.A.d.a	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182839.B.a.a	ENSGT00940000161014	ENSGT00390000007747 #18	ENSGT00940000156039 #19	ENSGT00390000002793 #20	ENSGT00390000018003.b #22	ENSGT00970000193562	ENSGT00390000008702 #23	ENSGT00390000014557 #24	ENSGT00940000153544.b #27	ENSGT00940000160423 #28	ENSGT00940000153380.A #29	ENSGT00390000018322 #25	ENSGT01050000244951.a.a #30	ENSGT00390000005178 #31	ENSGT00390000003443 #32	ENSGT00940000153377.C #33	ENSGT00940000160124 #34	ENSGT00390000004933	ENSGT00390000015899	ENSGT00390000006367.c
Cetacea	ANCESTRAL SPECIES	8	ENSGT01030000234535.D	ENSGT00390000000212	ENSGT00950000182939.b.a.b	ENSGT00940000156122	ENSGT00390000009532.A.d.a	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182839.B.a.a	ENSGT00940000161014	ENSGT00390000007747 #18	ENSGT00940000156039 #19	ENSGT00390000002793 #20	ENSGT00390000018003.b #22	ENSGT00970000193562	ENSGT00390000008702 #23	ENSGT00390000014557 #24	ENSGT00940000153544.b #27	ENSGT00940000160423 #28	ENSGT00940000153380.A #29	ENSGT01050000244951.a.a #30	ENSGT00390000018322 #25	ENSGT00390000005178 #31	ENSGT00390000003443 #32	ENSGT00940000153377.C #33	ENSGT00940000160124 #34	ENSGT00390000004933	ENSGT00390000015899	ENSGT00940000171088
Odontoceti	ANCESTRAL SPECIES	7	ENSGT00950000182939.b.a.b	ENSGT00640000091558.m.a	ENSGT00940000159157.h	ENSGT00940000156122	ENSGT00390000009532.A.d.a	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182839.B.a.a	ENSGT00940000161014	ENSGT00390000007747 #18	ENSGT00940000156039 #19	ENSGT00390000002793 #20	ENSGT00390000018003.b #22	ENSGT00390000008702 #23	ENSGT00390000014557 #24	ENSGT00940000153544.b #27	ENSGT00940000160423 #28	ENSGT00940000153380.A #29	ENSGT00390000018322 #25	ENSGT01050000244951.a.a #30	ENSGT00390000005178 #31	ENSGT00390000003443 #32	ENSGT00940000153377.C #33	ENSGT00940000160124 #34	ENSGT00390000004933	ENSGT00390000015899	ENSGT00940000171088	ENSGT00390000006367.c
Sperm whale	DUPLICATION
Sperm whale	MODERN SPECIES	17	ENSPCTG00005017598	ENSPCTG00005017626	SOX5 (ENSPCTG00005017662)	ENSPCTG00005017984	BCAT1 (ENSPCTG00005018026)	LRMP (ENSPCTG00005018385)	CASC1 (ENSPCTG00005018863)	ETFRF1 (ENSPCTG00005019366)	KRAS (ENSPCTG00005019457)	LMNTD1 (ENSPCTG00005019496)	RASSF8 (ENSPCTG00005019531)	BHLHE41 (ENSPCTG00005019571)	SSPN (ENSPCTG00005019595) #18	ITPR2 (ENSPCTG00005019648) #19	INTS13 (ENSPCTG00005019777) #20	FGFR1OP2 (ENSPCTG00005019821) #22	TM7SF3 (ENSPCTG00005019861) #23	MED21 (ENSPCTG00005019892) #24	STK38L (ENSPCTG00005019961) #27	ARNTL2 (ENSPCTG00005007473) #28	ENSPCTG00005007826 #25	PPFIBP1 (ENSPCTG00005007880) #30	REP15 (ENSPCTG00005008422) #31	MRPS35 (ENSPCTG00005008446) #32	MANSC4 (ENSPCTG00005008487) #33	KLHL42 (ENSPCTG00005008510) #34	PTHLH (ENSPCTG00005008534)	CCDC91 (ENSPCTG00005008591)	ENSPCTG00005008770	FAR2 (ENSPCTG00005008807)	ERGIC2 (ENSPCTG00005008934)
Sperm whale	MODERN SPECIES	2	WDR72 (ENSPCTG00005003691)	UNC13C (ENSPCTG00005003774)	ENSPCTG00005003866	RSL24D1 (ENSPCTG00005003879)	RAB27A (ENSPCTG00005003889)	PIGBOS1 (ENSPCTG00005003898)	PIGB (ENSPCTG00005003912)	CCPG1 (ENSPCTG00005003939)	ENSPCTG00005003967	DNAAF4 (ENSPCTG00005003984)	PYGO1 (ENSPCTG00005004001)	PRTG (ENSPCTG00005004024)	ENSPCTG00005004050	NEDD4 (ENSPCTG00005004131)	RFX7 (ENSPCTG00005004716)	ENSPCTG00005004742 #22	ENSPCTG00005004746	TEX9 (ENSPCTG00005004786)	MNS1 (ENSPCTG00005004828)	ZNF280D (ENSPCTG00005004865)	ENSPCTG00005004946	TCF12 (ENSPCTG00005005020)	CGNL1 (ENSPCTG00005005300)	MYZAP (ENSPCTG00005005348)	POLR2M (ENSPCTG00005005433)	ALDH1A2 (ENSPCTG00005005493)	AQP9 (ENSPCTG00005005660)	LIPC (ENSPCTG00005005721)	ADAM10 (ENSPCTG00005005786)	MINDY2 (ENSPCTG00005006000)	ENSPCTG00005006055
Odontoceti_a	ANCESTRAL SPECIES	6	ENSGT00950000182939.b.a.b	ENSGT00640000091558.m.a	ENSGT00940000159157.h	ENSGT00940000156122	ENSGT00390000009532.A.d.a	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182839.B.a.a	ENSGT00940000161014	ENSGT00390000007747 #18	ENSGT00940000156039 #19	ENSGT00390000002793 #20	ENSGT00390000018003.b #22	ENSGT00390000008702 #23	ENSGT00390000014557 #24	ENSGT00940000153544.b #27	ENSGT00940000160423 #28	ENSGT00940000153380.A #29	ENSGT01050000244951.a.a #30	ENSGT00390000005178 #31	ENSGT00390000003443 #32	ENSGT00940000153377.C #33	ENSGT00940000160124 #34	ENSGT00390000004933	ENSGT00390000015899	ENSGT00940000171088	ENSGT00390000006367.c	ENSGT00530000063113.A
Odontoceti_b	ANCESTRAL SPECIES	7	ENSGT00950000182939.b.a.b	ENSGT00640000091558.m.a	ENSGT00940000159157.h.a	ENSGT00940000156122	ENSGT00390000009532.A.d.a	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182839.B.a.a	ENSGT00940000161014	ENSGT00390000007747 #18	ENSGT00940000156039 #19	ENSGT00390000002793 #20	ENSGT00390000018003.b #22	ENSGT00390000008702 #23	ENSGT00390000014557 #24	ENSGT01040000241025	ENSGT00940000153544.b #27	ENSGT00940000160423 #28	ENSGT00940000169031 #26	ENSGT01050000244951.a.a #30	ENSGT00390000005178 #31	ENSGT00390000003443 #32	ENSGT00940000153377.C #33	ENSGT00940000160124 #34	ENSGT00390000004933	ENSGT00390000015899	ENSGT00940000171088	ENSGT00390000006367.c
Monodontidae	ANCESTRAL SPECIES	6	ENSGT00950000182939.b.a.b	ENSGT00640000091558.m.a	ENSGT00940000159157.h.a	ENSGT00940000156122	ENSGT00390000009532.A.d.a	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182839.B.a.a	ENSGT00940000161014	ENSGT00390000007747 #18	ENSGT00940000156039 #19	ENSGT00390000002793 #20	ENSGT00390000018003.b #22	ENSGT00390000008702 #23	ENSGT00390000014557 #24	ENSGT01040000241025	ENSGT00940000153544.b #27	ENSGT00940000160423 #28	ENSGT01050000244951.a.a #30	ENSGT00390000005178 #31	ENSGT00390000003443 #32	ENSGT00940000153377.C #33	ENSGT00940000160124 #34	ENSGT00390000004933	ENSGT00390000015899	ENSGT00940000171088	ENSGT00390000006367.c	ENSGT00530000063113.A
Beluga whale	MODERN SPECIES	23	ETNK1 (ENSDLEG00000008827)	ENSDLEG00000008898	ENSDLEG00000008908	SOX5 (ENSDLEG00000008971)	BCAT1 (ENSDLEG00000009143)	IRAG2 (ENSDLEG00000009161)	DNAI7 (ENSDLEG00000009247)	ETFRF1 (ENSDLEG00000009294)	ENSDLEG00000009332	LMNTD1 (ENSDLEG00000009367)	RASSF8 (ENSDLEG00000009451)	BHLHE41 (ENSDLEG00000009472)	SSPN (ENSDLEG00000009487) #18	ITPR2 (ENSDLEG00000009955) #19	INTS13 (ENSDLEG00000013042) #20	FGFR1OP2 (ENSDLEG00000013073) #22	TM7SF3 (ENSDLEG00000013098) #23	MED21 (ENSDLEG00000013129) #24	ENSDLEG00000013144	STK38L (ENSDLEG00000013158) #27	BMAL2 (ENSDLEG00000013194) #28	PPFIBP1 (ENSDLEG00000013239) #30	REP15 (ENSDLEG00000013421) #31	MRPS35 (ENSDLEG00000013439) #32	MANSC4 (ENSDLEG00000013624) #33	KLHL42 (ENSDLEG00000013634) #34	PTHLH (ENSDLEG00000013653)	CCDC91 (ENSDLEG00000013680)	ENSDLEG00000013765	IFIT1 (ENSDLEG00000013792)	FAR2 (ENSDLEG00000013825)
Narwhal	MODERN SPECIES	313	ETNK1 (ENSMMNG00015015575)	ENSMMNG00015015589	ENSMMNG00015015600	SOX5 (ENSMMNG00015015755)	BCAT1 (ENSMMNG00015016154)	ENSMMNG00015016354	DNAI7 (ENSMMNG00015016543)	ETFRF1 (ENSMMNG00015016654)	KRAS (ENSMMNG00015016691)	LMNTD1 (ENSMMNG00015016737)	RASSF8 (ENSMMNG00015016768)	BHLHE41 (ENSMMNG00015016813)	SSPN (ENSMMNG00015016833) #18	ITPR2 (ENSMMNG00015016907) #19	INTS13 (ENSMMNG00015017124) #20	FGFR1OP2 (ENSMMNG00015017164) #22	TM7SF3 (ENSMMNG00015017212) #23	MED21 (ENSMMNG00015017243) #24	ENSMMNG00015017258	STK38L (ENSMMNG00015017291) #27	BMAL2 (ENSMMNG00015017460) #28	PPFIBP1 (ENSMMNG00015017936) #30	MRPS35 (ENSMMNG00015018219) #32	MANSC4 (ENSMMNG00015018247) #33	KLHL42 (ENSMMNG00015018263) #34	PTHLH (ENSMMNG00015018274)	CCDC91 (ENSMMNG00015018340)	ENSMMNG00015018436	ENSMMNG00015018454	FAR2 (ENSMMNG00015018470)	ERGIC2 (ENSMMNG00015018496)
Vaquita	MODERN SPECIES	1	ETNK1 (ENSPSNG00000008531)	ENSPSNG00000008505	SH3BGRL2 (ENSPSNG00000008477)	SOX5 (ENSPSNG00000008185)	BCAT1 (ENSPSNG00000008000)	ENSPSNG00000007613	DNAI7 (ENSPSNG00000007486)	ETFRF1 (ENSPSNG00000007433)	KRAS (ENSPSNG00000007396)	LMNTD1 (ENSPSNG00000007273)	RASSF8 (ENSPSNG00000007228)	BHLHE41 (ENSPSNG00000007190)	SSPN (ENSPSNG00000007152) #18	ITPR2 (ENSPSNG00000007090) #19	INTS13 (ENSPSNG00000007021) #20	FGFR1OP2 (ENSPSNG00000006954) #22	TM7SF3 (ENSPSNG00000006912) #23	MED21 (ENSPSNG00000006883) #24	ENSPSNG00000006853	STK38L (ENSPSNG00000006831) #27	BMAL2 (ENSPSNG00000006769) #28	ENSPSNG00000006722 #26	ENSPSNG00000006681 #30	MRPS35 (ENSPSNG00000006622) #32	MANSC4 (ENSPSNG00000006601) #33	KLHL42 (ENSPSNG00000006576) #34	PTHLH (ENSPSNG00000006548)	CCDC91 (ENSPSNG00000006379)	ENSPSNG00000006325	FAR2 (ENSPSNG00000006264)	ERGIC2 (ENSPSNG00000006209)
Dolphin	MODERN SPECIES	923															INTS13 (ENSTTRG00000002720) #20	FGFR1OP2 (ENSTTRG00000002721) #22	TM7SF3 (ENSTTRG00000002722) #23	MED21 (ENSTTRG00000002723) #24
Blue whale	MODERN SPECIES	1	ETNK1 (ENSBMSG00010008756)	ENSBMSG00010008806	SOX5 (ENSBMSG00010008849)	BCAT1 (ENSBMSG00010008970)	ENSBMSG00010011021	DNAI7 (ENSBMSG00010011160)	ETFRF1 (ENSBMSG00010011375)	KRAS (ENSBMSG00010011390)	ENSBMSG00010011471	RASSF8 (ENSBMSG00010011482)	BHLHE41 (ENSBMSG00010011500)	SSPN (ENSBMSG00010011518) #18	ITPR2 (ENSBMSG00010011579) #19	ENSBMSG00010011832	INTS13 (ENSBMSG00010011853) #20	FGFR1OP2 (ENSBMSG00010011865) #22	ENSBMSG00010011878	TM7SF3 (ENSBMSG00010011888) #23	MED21 (ENSBMSG00010011918) #24	STK38L (ENSBMSG00010011935) #27	BMAL2 (ENSBMSG00010011997) #28	SMCO2 (ENSBMSG00010012071) #29	PPFIBP1 (ENSBMSG00010012137) #30	C12orf71 (ENSBMSG00010012172) #25	REP15 (ENSBMSG00010012183) #31	MRPS35 (ENSBMSG00010012193) #32	MANSC4 (ENSBMSG00010012224) #33	KLHL42 (ENSBMSG00010012247) #34	PTHLH (ENSBMSG00010012353)	CCDC91 (ENSBMSG00010012371)	ENSBMSG00010012387
Pecora	ANCESTRAL SPECIES	3	ENSGT01030000234535.D	ENSGT00390000000212	ENSGT00950000182939.b.a.b	ENSGT00940000156122	ENSGT00390000009532.A.d.a	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182839.B.a.a	ENSGT00940000161014	ENSGT00390000007747 #18	ENSGT00940000156039 #19	ENSGT00390000002793 #20	ENSGT00390000018003.b #22	ENSGT00970000193562	ENSGT00390000008702 #23	ENSGT00390000014557 #24	ENSGT00940000153544.b #27	ENSGT00940000160423 #28	ENSGT00940000153380.A #29	ENSGT00390000018322 #25	ENSGT01050000244951.a.a #30	ENSGT00390000005178 #31	ENSGT00390000003443 #32	ENSGT00940000153377.C #33	ENSGT00940000160124 #34	ENSGT00390000004933	ENSGT00390000015899	ENSGT00390000006367.c
Yarkand deer	MODERN SPECIES	14	ENSCHYG00000013698	ENSCHYG00000013570	BCAT1 (ENSCHYG00000013194)	IRAG2 (ENSCHYG00000013072)	DNAI7 (ENSCHYG00000012592)	ENSCHYG00000012493	KRAS (ENSCHYG00000012381)	ENSCHYG00000012342	LMNTD1 (ENSCHYG00000012241)	RASSF8 (ENSCHYG00000012178)	BHLHE41 (ENSCHYG00000012152)	SSPN (ENSCHYG00000012092) #18	ITPR2 (ENSCHYG00000010667) #19	ENSCHYG00000010472	INTS13 (ENSCHYG00000010278) #20	FGFR1OP2 (ENSCHYG00000010083) #22	ENSCHYG00000010010	TM7SF3 (ENSCHYG00000009826) #23	MED21 (ENSCHYG00000009773) #24	STK38L (ENSCHYG00000009684) #27	BMAL2 (ENSCHYG00000009395) #28	SMCO2 (ENSCHYG00000009242) #29	C12orf71 (ENSCHYG00000009176) #25	PPFIBP1 (ENSCHYG00000008480) #30	REP15 (ENSCHYG00000008410) #31	MRPS35 (ENSCHYG00000008368) #32	MANSC4 (ENSCHYG00000008337) #33	KLHL42 (ENSCHYG00000008316) #34	PTHLH (ENSCHYG00000008276)	CCDC91 (ENSCHYG00000008096)	FAR2 (ENSCHYG00000007935)
Percora_a	ANCESTRAL SPECIES	3	ENSGT01030000234535.D	ENSGT00390000000212	ENSGT00950000182939.b.a.b	ENSGT00940000156122	ENSGT00390000009532.A.d.a	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182839.B.a.a	ENSGT00940000161014	ENSGT00390000007747 #18	ENSGT00940000156039 #19	ENSGT00390000002793 #20	ENSGT00390000018003.b #22	ENSGT00970000193562	ENSGT00390000008702 #23	ENSGT00390000014557 #24	ENSGT00940000153544.b #27	ENSGT00940000160423 #28	ENSGT00940000153380.A #29	ENSGT00390000018322 #25	ENSGT01050000244951.a.a #30	ENSGT00390000005178 #31	ENSGT00390000003443 #32	ENSGT00940000153377.C #33	ENSGT00940000160124 #34	ENSGT00390000004933	ENSGT00390000015899	ENSGT00390000006367.c
Siberian musk deer	MODERN SPECIES	1250	ETNK1 (ENSMMSG00000023565)	SOX5 (ENSMMSG00000023587)	ENSMMSG00000023659	BCAT1 (ENSMMSG00000023666)	IRAG2 (ENSMMSG00000023682)	DNAI7 (ENSMMSG00000023707)	ETFRF1 (ENSMMSG00000023803)	KRAS (ENSMMSG00000023808)	ENSMMSG00000023815	LMNTD1 (ENSMMSG00000023821)	RASSF8 (ENSMMSG00000023837)	BHLHE41 (ENSMMSG00000023843)	SSPN (ENSMMSG00000023848) #18	ITPR2 (ENSMMSG00000023857) #19	INTS13 (ENSMMSG00000023873) #20	FGFR1OP2 (ENSMMSG00000023887) #22	ENSMMSG00000023896	TM7SF3 (ENSMMSG00000023901) #23	MED21 (ENSMMSG00000023910) #24	STK38L (ENSMMSG00000023918) #27	BMAL2 (ENSMMSG00000023936) #28	SMCO2 (ENSMMSG00000023956) #29	PPFIBP1 (ENSMMSG00000023976) #30	C12orf71 (ENSMMSG00000024010) #25	REP15 (ENSMMSG00000024013) #31	MRPS35 (ENSMMSG00000024018) #32	ENSMMSG00000024026	MANSC4 (ENSMMSG00000024028) #33	KLHL42 (ENSMMSG00000013526) #34	PTHLH (ENSMMSG00000013538)	CCDC91 (ENSMMSG00000013581)
Bovidae	ANCESTRAL SPECIES	3	ENSGT01030000234535.D	ENSGT00390000000212	ENSGT00950000182939.b.a.b	ENSGT00940000156122	ENSGT00390000009532.A.d.a	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182839.B.a.a	ENSGT00940000161014	ENSGT00390000007747 #18	ENSGT00940000156039 #19	ENSGT00390000002793 #20	ENSGT00390000018003.b #22	ENSGT00970000193562	ENSGT00390000008702 #23	ENSGT00390000014557 #24	ENSGT00940000153544.b #27	ENSGT00940000160423 #28	ENSGT00940000153380.A #29	ENSGT00390000018322 #25	ENSGT01050000244951.a.a #30	ENSGT00390000005178 #31	ENSGT00390000003443 #32	ENSGT00940000153377.C #33	ENSGT00940000160124 #34	ENSGT00390000004933	ENSGT00390000015899	ENSGT00390000006367.c
Bovinae	ANCESTRAL SPECIES	10	ENSGT01030000234535.D	ENSGT00390000000212	ENSGT00950000182939.b.a.b	ENSGT00940000156122	ENSGT00390000009532.A.d.a.o	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182839.B.a.a	ENSGT00940000161014	ENSGT00390000007747 #18	ENSGT00940000156039 #19	ENSGT00390000002793 #20	ENSGT00390000018003.b #22	ENSGT00970000193562	ENSGT00390000008702 #23	ENSGT00390000014557 #24	ENSGT00940000153544.b #27	ENSGT00940000160423 #28	ENSGT00940000153380.A #29	ENSGT00390000018322 #25	ENSGT01050000244951.a.a #30	ENSGT00390000005178 #31	ENSGT00390000003443 #32	ENSGT00940000153377.C #33	ENSGT00940000160124 #34	ENSGT00390000004933	ENSGT00390000015899	ENSGT00390000006367.c
Bos	ANCESTRAL SPECIES	2	ENSGT01030000234535.D	ENSGT00390000000212	ENSGT00950000182939.b.a.b	ENSGT00940000156122	ENSGT00390000009532.A.d.a.o	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182839.B.a.a	ENSGT00940000161014	ENSGT00390000007747 #18	ENSGT00940000156039 #19	ENSGT00390000002793 #20	ENSGT00390000018003.b #22	ENSGT00970000193562	ENSGT00390000008702 #23	ENSGT00390000014557 #24	ENSGT00940000153544.b #27	ENSGT00940000160423 #28	ENSGT00940000153380.A #29	ENSGT00390000018322 #25	ENSGT01050000244951.a.a #30	ENSGT00390000005178 #31	ENSGT00390000003443 #32	ENSGT00940000153377.C #33	ENSGT00940000160124 #34	ENSGT00390000004933	ENSGT00390000015899	ENSGT00390000006367.c
Bos_b	ANCESTRAL SPECIES	22	ENSGT00950000182939.b.a.b	ENSGT00940000154152.d.b.h.a.b	ENSGT00940000156122	ENSGT00390000009532.A.d.a.o	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00530000063539.b.lb.a	ENSGT00910000144343	ENSGT00950000182839.B.a.a	ENSGT00940000161014	ENSGT00390000007747 #18	ENSGT00940000156039 #19	ENSGT00390000002793 #20	ENSGT00390000018003.b #22	ENSGT00970000193562	ENSGT00390000008702 #23	ENSGT00390000014557 #24	ENSGT00940000153544.b #27	ENSGT00940000160423 #28	ENSGT00940000153380.A #29	ENSGT00390000018322 #25	ENSGT01050000244951.a.a #30	ENSGT00390000005178 #31	ENSGT00390000003443 #32	ENSGT00940000153377.C #33	ENSGT00940000160124 #34	ENSGT00390000004933	ENSGT00390000015899	ENSGT00390000006367.c
Cow	MODERN SPECIES	24	ENSBTAG00000004109	SOX5 (ENSBTAG00000022360)	BCAT1 (ENSBTAG00000013825)	IRAG2 (ENSBTAG00000019711)	DNAI7 (ENSBTAG00000002972)	ETFRF1 (ENSBTAG00000026624)	KRAS (ENSBTAG00000009778)	ENSBTAG00000055210	LMNTD1 (ENSBTAG00000000749)	RASSF8 (ENSBTAG00000021980)	BHLHE41 (ENSBTAG00000030575)	SSPN (ENSBTAG00000000393) #18	ITPR2 (ENSBTAG00000002313) #19	INTS13 (ENSBTAG00000013515) #20	ENSBTAG00000052661	FGFR1OP2 (ENSBTAG00000004532) #22	TM7SF3 (ENSBTAG00000006985) #23	MED21 (ENSBTAG00000005082) #24	STK38L (ENSBTAG00000011798) #27	ARNTL2 (ENSBTAG00000011804) #28	C5H12orf71 (ENSBTAG00000002775) #25	PPFIBP1 (ENSBTAG00000004283) #30	REP15 (ENSBTAG00000022083) #31	MRPS35 (ENSBTAG00000006369) #32	MANSC4 (ENSBTAG00000030622) #33	KLHL42 (ENSBTAG00000006372) #34	ENSBTAG00000006530	PTHLH (ENSBTAG00000006538)	CCDC91 (ENSBTAG00000012448)	FAR2 (ENSBTAG00000011095)	ERGIC2 (ENSBTAG00000011096)
Hybrid Bos Indicus	MODERN SPECIES	24	ETNK1 (ENSBIXG00005007986)	SOX5 (ENSBIXG00005007922)	ENSBIXG00005007855	ENSBIXG00005029312	IRAG2 (ENSBIXG00005029377)	DNAI7 (ENSBIXG00005029450)	ETFRF1 (ENSBIXG00005029501)	KRAS (ENSBIXG00005029534)	ENSBIXG00005029548	ENSBIXG00005029563	RASSF8 (ENSBIXG00005029583)	BHLHE41 (ENSBIXG00005029600)	SSPN (ENSBIXG00005029617) #18	ITPR2 (ENSBIXG00005029654) #19	INTS13 (ENSBIXG00005029676) #20	FGFR1OP2 (ENSBIXG00005029694) #22	ENSBIXG00005029705	TM7SF3 (ENSBIXG00005029713) #23	MED21 (ENSBIXG00005029720) #24	STK38L (ENSBIXG00005029742) #27	BMAL2 (ENSBIXG00005029787) #28	SMCO2 (ENSBIXG00005029999) #29	PPFIBP1 (ENSBIXG00005030080) #30	ENSBIXG00005030157	ENSBIXG00005030158	C12orf71 (ENSBIXG00005030164) #25	REP15 (ENSBIXG00005001594) #31	MRPS35 (ENSBIXG00005029219) #32	MANSC4 (ENSBIXG00005029203) #33	KLHL42 (ENSBIXG00005001696) #34	ENSBIXG00005029171
Bos_a	ANCESTRAL SPECIES	3	ENSGT00910000148264	ENSGT00390000000212	ENSGT00950000182939.b.a.b	ENSGT00940000156122	ENSGT00390000009532.A.d.a.o	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182839.B.a.a	ENSGT00940000161014	ENSGT00390000007747 #18	ENSGT00940000156039 #19	ENSGT00390000002793 #20	ENSGT00390000018003.b #22	ENSGT00970000193562	ENSGT00390000008702 #23	ENSGT00390000014557 #24	ENSGT00940000153544.b #27	ENSGT00940000160423 #28	ENSGT00940000153380.A #29	ENSGT00390000018322 #25	ENSGT01050000244951.a.a #30	ENSGT00390000005178 #31	ENSGT00390000003443 #32	ENSGT00940000153377.C #33	ENSGT00940000160124 #34	ENSGT00390000004933	ENSGT00390000015899	ENSGT00390000006367.c
Wild yak	MODERN SPECIES	1417											RASSF8 (ENSBMUG00000022595)	ENSBMUG00000022604	SSPN (ENSBMUG00000022617) #18	ITPR2 (ENSBMUG00000022656) #19	INTS13 (ENSBMUG00000022679) #20	FGFR1OP2 (ENSBMUG00000022693) #22	ENSBMUG00000022702	TM7SF3 (ENSBMUG00000022712) #23	MED21 (ENSBMUG00000022717) #24	STK38L (ENSBMUG00000022723) #27	BMAL2 (ENSBMUG00000022840) #28	SMCO2 (ENSBMUG00000022924) #29	C12orf71 (ENSBMUG00000022953) #25	PPFIBP1 (ENSBMUG00000023024) #30	REP15 (ENSBMUG00000023046) #31	MRPS35 (ENSBMUG00000023070) #32	MANSC4 (ENSBMUG00000023089) #33	KLHL42 (ENSBMUG00000023099) #34	ENSBMUG00000023109
Domestic yak	MODERN SPECIES	24	ENSBGRG00000001086	IRAG2 (ENSBGRG00000001276)	DNAI7 (ENSBGRG00000001323)	ENSBGRG00000001511	KRAS (ENSBGRG00000001524)	LMNTD1 (ENSBGRG00000001546)	RASSF8 (ENSBGRG00000001611)	BHLHE41 (ENSBGRG00000001670)	SSPN (ENSBGRG00000001691) #18	ITPR2 (ENSBGRG00000001728) #19	ENSBGRG00000001831	ENSBGRG00000001852	ENSBGRG00000001863	ENSBGRG00000001877	INTS13 (ENSBGRG00000001890) #20	FGFR1OP2 (ENSBGRG00000001934) #22	ENSBGRG00000001967	TM7SF3 (ENSBGRG00000001991) #23	MED21 (ENSBGRG00000002068) #24	ENSBGRG00000002107	ENSBGRG00000002115	ENSBGRG00000002121	STK38L (ENSBGRG00000002135) #27	BMAL2 (ENSBGRG00000002219) #28	SMCO2 (ENSBGRG00000002549) #29	PPFIBP1 (ENSBGRG00000002623) #30	C12orf71 (ENSBGRG00000002668) #25	REP15 (ENSBGRG00000002676) #31	MRPS35 (ENSBGRG00000002686) #32	MANSC4 (ENSBGRG00000002701) #33	KLHL42 (ENSBGRG00000002712) #34
American bison	MODERN SPECIES	3284	ENSBBBG00000011091	C2CD5 (ENSBBBG00000011064)	ETNK1 (ENSBBBG00000010821)	SOX5 (ENSBBBG00000010795)	ENSBBBG00000010741	IRAG2 (ENSBBBG00000010696)	DNAI7 (ENSBBBG00000001867)	ENSBBBG00000001854	KRAS (ENSBBBG00000010586)	ENSBBBG00000010578	ENSBBBG00000010575	RASSF8 (ENSBBBG00000010565)	SSPN (ENSBBBG00000010548) #18	ITPR2 (ENSBBBG00000010536) #19	INTS13 (ENSBBBG00000010504) #20	FGFR1OP2 (ENSBBBG00000010494) #22	ENSBBBG00000001825	TM7SF3 (ENSBBBG00000007642) #23	MED21 (ENSBBBG00000010435) #24	STK38L (ENSBBBG00000010425) #27	BMAL2 (ENSBBBG00000010408) #28	SMCO2 (ENSBBBG00000010301) #29	ENSBBBG00000010290	C12orf71 (ENSBBBG00000001760) #25	PPFIBP1 (ENSBBBG00000001757) #30	REP15 (ENSBBBG00000025253) #31	MRPS35 (ENSBBBG00000025249) #32	MANSC4 (ENSBBBG00000006682) #33	KLHL42 (ENSBBBG00000025229) #34	PTHLH (ENSBBBG00000007849)	CCDC91 (ENSBBBG00000025175)
Caprinae	ANCESTRAL SPECIES		ENSGT00390000000212	ENSGT00950000182939.b.a.b	ENSGT00940000156122	ENSGT00390000009532.A.d.a	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182839.B.a.a	ENSGT00940000161014	ENSGT00390000007747 #18	ENSGT00940000156039 #19	ENSGT00390000002793 #20	ENSGT00970000193562	ENSGT00390000018003.b #22	ENSGT00390000008702 #23	ENSGT00390000014557 #24	ENSGT00940000153544.b #27	ENSGT00940000160423 #28	ENSGT00940000153380.A #29	ENSGT00390000018322 #25	ENSGT01050000244951.a.a #30	ENSGT00390000005178 #31	ENSGT00390000003443 #32	ENSGT00940000153377.C #33	ENSGT00940000160124 #34	ENSGT00390000004933	ENSGT00390000015899	ENSGT00390000006367.c	ENSGT00530000063113.A
Goat	MODERN SPECIES	24	ENSCHIG00000003098	SOX5 (ENSCHIG00000026249)	BCAT1 (ENSCHIG00000025125)	ENSCHIG00000000786	IRAG2 (ENSCHIG00000006732)	DNAI7 (ENSCHIG00000016268)	ETFRF1 (ENSCHIG00000023135)	KRAS (ENSCHIG00000026575)	ENSCHIG00000011443	LMNTD1 (ENSCHIG00000017319)	RASSF8 (ENSCHIG00000024588)	BHLHE41 (ENSCHIG00000024108)	SSPN (ENSCHIG00000024484) #18	ITPR2 (ENSCHIG00000016600) #19	INTS13 (ENSCHIG00000002599) #20	FGFR1OP2 (ENSCHIG00000020593) #22	ENSCHIG00000001969	TM7SF3 (ENSCHIG00000010359) #23	MED21 (ENSCHIG00000017040) #24	STK38L (ENSCHIG00000015117) #27	BMAL2 (ENSCHIG00000019532) #28	SMCO2 (ENSCHIG00000023398) #29	ENSCHIG00000003027 #25	ENSCHIG00000013535	PPFIBP1 (ENSCHIG00000026121) #30	REP15 (ENSCHIG00000007339) #31	ENSCHIG00000018625	ENSCHIG00000025620 #32	KLHL42 (ENSCHIG00000016441) #34	PTHLH (ENSCHIG00000007526)	ENSCHIG00000026911
Rambouillet Sheep	MODERN SPECIES	19	ENSOARG00020004905	BCAT1 (ENSOARG00020004542)	IRAG2 (ENSOARG00020004466)	CASC1 (ENSOARG00020003767)	ENSOARG00020003693	KRAS (ENSOARG00020003619)	ENSOARG00020003591	ENSOARG00020003559	ENSOARG00020003528	RASSF8 (ENSOARG00020003491)	BHLHE41 (ENSOARG00020003455)	SSPN (ENSOARG00020003422) #18	ITPR2 (ENSOARG00020003133) #19	INTS13 (ENSOARG00020003013) #20	ENSOARG00020002981	FGFR1OP2 (ENSOARG00020002964) #22	TM7SF3 (ENSOARG00020002918) #23	ENSOARG00020002907 #24	STK38L (ENSOARG00020002895) #27	BMAL2 (ENSOARG00020002869) #28	ENSOARG00020002844 #29	ENSOARG00020002836 #25	ENSOARG00020002830 #25	ENSOARG00020002826	PPFIBP1 (ENSOARG00020002786) #30	REP15 (ENSOARG00020002773) #31	MRPS35 (ENSOARG00020002709) #32	MANSC4 (ENSOARG00020002683) #33	KLHL42 (ENSOARG00020002673) #34	PTHLH (ENSOARG00020002659)	CCDC91 (ENSOARG00020002633)
Laurasiatheria_b	ANCESTRAL SPECIES	6	ENSGT00390000000212	ENSGT00950000182939.b.a.b	ENSGT00940000156122	ENSGT00390000009532.A.d.a	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182839.B.a.a	ENSGT00940000161014	ENSGT00390000007747 #18	ENSGT00940000156039 #19	ENSGT00940000167397.b	ENSGT00390000002793 #20	ENSGT00390000018003.b #22	ENSGT00970000193562	ENSGT00390000008702 #23	ENSGT00390000014557 #24	ENSGT00940000153544.b #27	ENSGT00940000160423 #28	ENSGT00940000153380.A #29	ENSGT00390000018322 #25	ENSGT01050000244951.a.a #30	ENSGT00390000005178 #31	ENSGT00390000003443 #32	ENSGT00940000153377.C #33	ENSGT00940000160124 #34	ENSGT00390000004933	ENSGT00390000015899	ENSGT00390000006367.c
Carnivora	ANCESTRAL SPECIES	3	ENSGT00910000148264	ENSGT00390000000212	ENSGT00950000182939.b.a.b	ENSGT00940000156122	ENSGT00390000009532.A.d.a	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182839.B.a.a	ENSGT00940000161014	ENSGT00390000007747 #18	ENSGT00940000156039 #19	ENSGT00390000002793 #20	ENSGT00390000018003.b #22	ENSGT00970000193562	ENSGT00390000008702 #23	ENSGT00390000014557 #24	ENSGT00940000153544.b #27	ENSGT00940000160423 #28	ENSGT00940000153380.A #29	ENSGT00390000018322 #25	ENSGT01050000244951.a.a #30	ENSGT00390000005178 #31	ENSGT00390000003443 #32	ENSGT00940000153377.C #33	ENSGT00940000160124 #34	ENSGT00390000004933	ENSGT00390000015899	ENSGT00390000006367.c
Felidae	ANCESTRAL SPECIES	2	ENSGT01030000234535.D	ENSGT00390000000212	ENSGT00950000182939.b.a.b	ENSGT00940000156122	ENSGT00390000009532.A.d.a	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182839.B.a.a	ENSGT00940000161014	ENSGT00390000007747 #18	ENSGT00940000156039 #19	ENSGT00390000002793 #20	ENSGT00390000018003.b #22	ENSGT00970000193562	ENSGT00390000008702 #23	ENSGT00390000014557 #24	ENSGT00940000153544.b #27	ENSGT00940000160423 #28	ENSGT00940000153380.A #29	ENSGT00390000018322 #25	ENSGT01050000244951.a.a #30	ENSGT00390000005178 #31	ENSGT00390000003443 #32	ENSGT00940000153377.C #33	ENSGT00940000160124 #34	ENSGT00390000004933	ENSGT00390000015899	ENSGT00390000006367.c
Panthera	ANCESTRAL SPECIES		ENSGT00390000000212	ENSGT00950000182939.b.a.b	ENSGT00940000156122	ENSGT00390000009532.A.d.a	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00390000006621.p.b	ENSGT00910000144343	ENSGT00950000182839.B.a.a	ENSGT00940000161014	ENSGT00390000007747 #18	ENSGT00940000156039 #19	ENSGT00390000002793 #20	ENSGT00390000018003.b #22	ENSGT00970000193562	ENSGT00390000008702 #23	ENSGT00390000014557 #24	ENSGT00940000153544.b #27	ENSGT00940000160423 #28	ENSGT00940000153380.A #29	ENSGT00390000018322 #25	ENSGT01050000244951.a.a #30	ENSGT00390000005178 #31	ENSGT00390000003443 #32	ENSGT00940000153377.C #33	ENSGT00940000160124 #34	ENSGT00390000004933	ENSGT00390000015899	ENSGT00390000006367.c
Panthera_a	ANCESTRAL SPECIES	5	ENSGT00390000000212	ENSGT00950000182939.b.a.b	ENSGT00940000156122	ENSGT00390000009532.A.d.a	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00390000006621.p.b	ENSGT00910000144343	ENSGT00950000182839.B.a.a	ENSGT00940000161014	ENSGT00390000007747 #18	ENSGT00940000156039 #19	ENSGT00390000002793 #20	ENSGT00390000018003.b #22	ENSGT00970000193562	ENSGT00390000008702 #23	ENSGT00390000014557 #24	ENSGT00940000153544.b #27	ENSGT00940000160423 #28	ENSGT00940000153380.A #29	ENSGT00390000018322 #25	ENSGT01050000244951.a.a #30	ENSGT00390000005178 #31	ENSGT00390000003443 #32	ENSGT00940000153377.C #33	ENSGT00940000160124 #34	ENSGT00390000004933	ENSGT00390000015899	ENSGT00390000006367.c
lion	MODERN SPECIES	7	ST8SIA1 (ENSPLOG00000011708)	C2CD5 (ENSPLOG00000011822)	ETNK1 (ENSPLOG00000012031)	SOX5 (ENSPLOG00000012174)	BCAT1 (ENSPLOG00000012638)	IRAG2 (ENSPLOG00000012818)	DNAI7 (ENSPLOG00000012922)	ETFRF1 (ENSPLOG00000013319)	KRAS (ENSPLOG00000013375)	LMNTD1 (ENSPLOG00000013503)	RASSF8 (ENSPLOG00000013701)	BHLHE41 (ENSPLOG00000013781)	SSPN (ENSPLOG00000013850) #18	ITPR2 (ENSPLOG00000014010) #19	INTS13 (ENSPLOG00000014549) #20	FGFR1OP2 (ENSPLOG00000014661) #22	TM7SF3 (ENSPLOG00000014731) #23	MED21 (ENSPLOG00000014783) #24	ENSPLOG00000014826	STK38L (ENSPLOG00000014888) #27	BMAL2 (ENSPLOG00000015029) #28	SMCO2 (ENSPLOG00000015964) #29	PPFIBP1 (ENSPLOG00000016104) #30	C12orf71 (ENSPLOG00000016208) #25	REP15 (ENSPLOG00000016244) #31	MRPS35 (ENSPLOG00000016271) #32	MANSC4 (ENSPLOG00000016405) #33	KLHL42 (ENSPLOG00000016454) #34	PTHLH (ENSPLOG00000016491)	CCDC91 (ENSPLOG00000016602)	FAR2 (ENSPLOG00000016727)
leopard	MODERN SPECIES	22	ENSPPRG00000024478	ENSPPRG00000015924	BCAT1 (ENSPPRG00000014007)	IRAG2 (ENSPPRG00000011474)	DNAI7 (ENSPPRG00000009751)	ETFRF1 (ENSPPRG00000008544)	KRAS (ENSPPRG00000007389)	ENSPPRG00000021326	LMNTD1 (ENSPPRG00000005840)	ENSPPRG00000002786	RASSF8 (ENSPPRG00000002732)	BHLHE41 (ENSPPRG00000002206)	SSPN (ENSPPRG00000001270) #18	ITPR2 (ENSPPRG00000000552) #19	INTS13 (ENSPPRG00000023929) #20	FGFR1OP2 (ENSPPRG00000024117) #22	ENSPPRG00000021015	TM7SF3 (ENSPPRG00000024445) #23	MED21 (ENSPPRG00000024523) #24	STK38L (ENSPPRG00000024631) #27	BMAL2 (ENSPPRG00000020278) #28	C12orf71 (ENSPPRG00000006577) #25	PPFIBP1 (ENSPPRG00000006483) #30	REP15 (ENSPPRG00000020751) #31	MRPS35 (ENSPPRG00000022747) #32	MANSC4 (ENSPPRG00000023400) #33	KLHL42 (ENSPPRG00000023573) #34	PTHLH (ENSPPRG00000023622)	CCDC91 (ENSPPRG00000024057)	FAR2 (ENSPPRG00000024441)	ERGIC2 (ENSPPRG00000024764)
Tiger	MODERN SPECIES	60			SOX5 (ENSPTIG00000011175)	BCAT1 (ENSPTIG00000011686)	IRAG2 (ENSPTIG00000011942)	DNAI7 (ENSPTIG00000012206)	ETFRF1 (ENSPTIG00000012518)	KRAS (ENSPTIG00000012574)	ENSPTIG00000009930	LMNTD1 (ENSPTIG00000012835)	RASSF8 (ENSPTIG00000012970)	ENSPTIG00000013141	ENSPTIG00000013161 #18	ITPR2 (ENSPTIG00000013225) #19	INTS13 (ENSPTIG00000013897) #20	FGFR1OP2 (ENSPTIG00000014013) #22	ENSPTIG00000009962	TM7SF3 (ENSPTIG00000014224) #23	MED21 (ENSPTIG00000014470) #24	STK38L (ENSPTIG00000014491) #27	BMAL2 (ENSPTIG00000015319) #28	SMCO2 (ENSPTIG00000015662) #29	C12orf71 (ENSPTIG00000016335) #25	PPFIBP1 (ENSPTIG00000016378) #30	REP15 (ENSPTIG00000009968) #31	MRPS35 (ENSPTIG00000016892) #32	MANSC4 (ENSPTIG00000016906) #33	KLHL42 (ENSPTIG00000016956) #34	PTHLH (ENSPTIG00000016986)	CCDC91 (ENSPTIG00000017222)
Cat	MODERN SPECIES	238	ST8SIA1 (ENSFCAG00000037857)	C2CD5 (ENSFCAG00000025410)	ETNK1 (ENSFCAG00000022622)	SOX5 (ENSFCAG00000002051)	BCAT1 (ENSFCAG00000008611)	IRAG2 (ENSFCAG00000027350)	DNAI7 (ENSFCAG00000030767)	ETFRF1 (ENSFCAG00000036819)	KRAS (ENSFCAG00000026808)	LMNTD1 (ENSFCAG00000027228)	RASSF8 (ENSFCAG00000028575)	BHLHE41 (ENSFCAG00000042690)	SSPN (ENSFCAG00000035306) #18	ITPR2 (ENSFCAG00000004324) #19	INTS13 (ENSFCAG00000004325) #20	FGFR1OP2 (ENSFCAG00000024282) #22	TM7SF3 (ENSFCAG00000025765) #23	MED21 (ENSFCAG00000035227) #24	STK38L (ENSFCAG00000030270) #27	ARNTL2 (ENSFCAG00000000386) #28	SMCO2 (ENSFCAG00000000387) #29	PPFIBP1 (ENSFCAG00000007533) #30	C12orf71 (ENSFCAG00000042244) #25	REP15 (ENSFCAG00000025027) #31	MRPS35 (ENSFCAG00000029524) #32	MANSC4 (ENSFCAG00000045550) #33	KLHL42 (ENSFCAG00000043246) #34	PTHLH (ENSFCAG00000008323)	CCDC91 (ENSFCAG00000029389)	ENSFCAG00000039611	FAR2 (ENSFCAG00000000237)
Caniformia	ANCESTRAL SPECIES	19	ENSGT00910000148264	ENSGT00390000000212	ENSGT00950000182939.b.a.b	ENSGT00940000156122	ENSGT00390000009532.A.d.a	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182839.B.a.a	ENSGT00940000161014	ENSGT00390000007747 #18	ENSGT00940000156039 #19	ENSGT00390000002793 #20	ENSGT00390000018003.b #22	ENSGT00970000193562	ENSGT00390000008702 #23	ENSGT00390000014557 #24	ENSGT00940000153544.b #27	ENSGT00940000160423 #28	ENSGT00940000153380.A #29	ENSGT00390000018322 #25	ENSGT01050000244951.a.a #30	ENSGT00390000005178 #31	ENSGT00390000003443 #32	ENSGT00940000153377.C #33	ENSGT00940000160124 #34	ENSGT00390000004933	ENSGT00390000015899	ENSGT00390000006367.c
Canidae	ANCESTRAL SPECIES	8	ENSGT00390000000212	ENSGT00950000182939.b.a.b	ENSGT00940000156122	ENSGT00390000009532.A.d.a	ENSGT00940000160340.c.c.b.b	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182839.B.a.a	ENSGT00940000161014	ENSGT00390000007747 #18	ENSGT00940000156039 #19	ENSGT00390000002793 #20	ENSGT00390000018003.b #22	ENSGT00390000008702 #23	ENSGT00390000014557 #24	ENSGT00940000153544.b #27	ENSGT00940000160423 #28	ENSGT00940000153380.A #29	ENSGT00390000018322 #25	ENSGT01050000244951.a.a #30	ENSGT00390000005178 #31	ENSGT00390000003443 #32	ENSGT00940000153377.C #33	ENSGT00940000160124 #34	ENSGT00390000004933	ENSGT00390000015899	ENSGT00390000006367.c	ENSGT00530000063113.A
Canis_lupus	ANCESTRAL SPECIES	14	ENSGT00390000009532.A.d.a	ENSGT00940000160340.c.c.b.b	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00910000144343	ENSGT00390000018145.kc.a	ENSGT00390000018085.a.b.a.d	ENSGT00950000182839.B.a.a	ENSGT00940000161014	ENSGT00390000007747 #18	ENSGT00940000156039 #19	ENSGT00940000159076.r	ENSGT00390000002793 #20	ENSGT00390000018003.b #22	ENSGT00390000008702 #23	ENSGT00390000014557 #24	ENSGT00940000153544.b #27	ENSGT00940000160423 #28	ENSGT00940000153380.A #29	ENSGT00390000018322 #25	ENSGT01050000244951.a.a #30	ENSGT00390000005178 #31	ENSGT00390000003443 #32	ENSGT00940000153377.C #33	ENSGT00940000160124 #34	ENSGT00390000004933	ENSGT00390000015899	ENSGT00390000006367.c	ENSGT00530000063113.A
Dingo	MODERN SPECIES	295	BCAT1 (ENSCAFG00020012762)	ENSCAFG00020012764	IRAG2 (ENSCAFG00020012771)	DNAI7 (ENSCAFG00020012784)	ETFRF1 (ENSCAFG00020012787)	KRAS (ENSCAFG00020012793)	LMNTD1 (ENSCAFG00020012824)	ENSCAFG00020012827	ENSCAFG00020012829	RASSF8 (ENSCAFG00020012835)	BHLHE41 (ENSCAFG00020012838)	SSPN (ENSCAFG00020012850) #18	ITPR2 (ENSCAFG00020012877) #19	ENSCAFG00020012958	INTS13 (ENSCAFG00020012960) #20	FGFR1OP2 (ENSCAFG00020012964) #22	TM7SF3 (ENSCAFG00020012969) #23	MED21 (ENSCAFG00020012972) #24	STK38L (ENSCAFG00020012999) #27	BMAL2 (ENSCAFG00020013461) #28	SMCO2 (ENSCAFG00020013467) #29	PPFIBP1 (ENSCAFG00020013476) #30	ENSCAFG00020013505 #25	REP15 (ENSCAFG00020013508) #31	MRPS35 (ENSCAFG00020013510) #32	MANSC4 (ENSCAFG00020013514) #33	KLHL42 (ENSCAFG00020013524) #34	PTHLH (ENSCAFG00020013530)	CCDC91 (ENSCAFG00020013541)	FAR2 (ENSCAFG00020013594)	ERGIC2 (ENSCAFG00020013599)
Dog	MODERN SPECIES	19	BCAT1 (ENSCAFG00845013534)	ENSCAFG00845013478	LRMP (ENSCAFG00845013359)	DNAI7 (ENSCAFG00845013037)	ETFRF1 (ENSCAFG00845012920)	KRAS (ENSCAFG00845026771)	LMNTD1 (ENSCAFG00845026629)	ENSCAFG00845026573	ENSCAFG00845026487	RASSF8 (ENSCAFG00845026362)	BHLHE41 (ENSCAFG00845026188)	SSPN (ENSCAFG00845026060) #18	ITPR2 (ENSCAFG00845025705) #19	ENSCAFG00845025636	INTS13 (ENSCAFG00845025493) #20	FGFR1OP2 (ENSCAFG00845025406) #22	TM7SF3 (ENSCAFG00845025291) #23	MED21 (ENSCAFG00845025211) #24	STK38L (ENSCAFG00845025108) #27	ENSCAFG00845024620 #28	SMCO2 (ENSCAFG00845024385) #29	ENSCAFG00845024323 #25	PPFIBP1 (ENSCAFG00845023504) #30	REP15 (ENSCAFG00845023340) #31	MRPS35 (ENSCAFG00845023197) #32	MANSC4 (ENSCAFG00845023132) #33	KLHL42 (ENSCAFG00845023098) #34	PTHLH (ENSCAFG00845022996)	CCDC91 (ENSCAFG00845022625)	FAR2 (ENSCAFG00845022455)	ERGIC2 (ENSCAFG00845022137)
Red fox	MODERN SPECIES	18	ENSVVUG00000000296	SOX5 (ENSVVUG00000000151)	BCAT1 (ENSVVUG00000030352)	ENSVVUG00000030351	IRAG2 (ENSVVUG00000030348)	DNAI7 (ENSVVUG00000030347)	ETFRF1 (ENSVVUG00000030346)	ENSVVUG00000030345	LMNTD1 (ENSVVUG00000030344)	ENSVVUG00000030343	RASSF8 (ENSVVUG00000030342)	BHLHE41 (ENSVVUG00000030341)	SSPN (ENSVVUG00000030340) #18	ITPR2 (ENSVVUG00000030334) #19	INTS13 (ENSVVUG00000030299) #20	FGFR1OP2 (ENSVVUG00000030294) #22	TM7SF3 (ENSVVUG00000030290) #23	MED21 (ENSVVUG00000030287) #24	STK38L (ENSVVUG00000030277) #27	BMAL2 (ENSVVUG00000030272) #28	SMCO2 (ENSVVUG00000030266) #29	ENSVVUG00000030260 #25	ENSVVUG00000030257	PPFIBP1 (ENSVVUG00000030242) #30	REP15 (ENSVVUG00000030238) #31	MRPS35 (ENSVVUG00000030237) #32	MANSC4 (ENSVVUG00000030234) #33	KLHL42 (ENSVVUG00000030233) #34	PTHLH (ENSVVUG00000030227)	CCDC91 (ENSVVUG00000030214)	FAR2 (ENSVVUG00000030198)
Caniformia_b	ANCESTRAL SPECIES	17	ENSGT01030000234535.D	ENSGT00390000000212	ENSGT00950000182939.b.a.b	ENSGT00940000156122	ENSGT00390000009532.A.d.a	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182839.B.a.a	ENSGT00940000161014	ENSGT00390000007747 #18	ENSGT00940000156039 #19	ENSGT00390000002793 #20	ENSGT00390000018003.b #22	ENSGT00970000193562	ENSGT00390000008702 #23	ENSGT00390000014557 #24	ENSGT00940000153544.b #27	ENSGT00940000160423 #28	ENSGT00940000153380.A #29	ENSGT00390000018322 #25	ENSGT01050000244951.a.a #30	ENSGT00390000005178 #31	ENSGT00390000003443 #32	ENSGT00940000153377.C #33	ENSGT00940000160124 #34	ENSGT00390000004933	ENSGT00390000015899	ENSGT00390000006367.c
Mustelinae	ANCESTRAL SPECIES	93	ENSGT01030000234535.D	ENSGT00390000000212	ENSGT00950000182939.b.a.b	ENSGT00940000156122	ENSGT00390000009532.A.d.a	ENSGT00530000063722.a.b	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182839.B.a.a	ENSGT00940000161014	ENSGT00390000007747 #18	ENSGT00940000156039 #19	ENSGT00390000002793 #20	ENSGT00390000018003.b #22	ENSGT00390000008702 #23	ENSGT00390000014557 #24	ENSGT00940000153544.b #27	ENSGT00940000160423 #28	ENSGT00940000153380.A #29	ENSGT00390000018322 #25	ENSGT01050000244951.a.a #30	ENSGT00390000005178 #31	ENSGT00390000003443.f #32	ENSGT00940000153377.C #33	ENSGT00940000160124 #34	ENSGT00390000004933	ENSGT00390000015899	ENSGT00390000006367.c	ENSGT00530000063113.A
Ferret	MODERN SPECIES	393					ENSMPUG00000010205	IRAG2 (ENSMPUG00000010212)	DNAI7 (ENSMPUG00000010283)	KRAS (ENSMPUG00000010291)	LMNTD1 (ENSMPUG00000010334)	RASSF8 (ENSMPUG00000010343)	ENSMPUG00000010346	SSPN (ENSMPUG00000010350) #18	ENSMPUG00000010363	ITPR2 (ENSMPUG00000010371) #19	INTS13 (ENSMPUG00000010392) #20	FGFR1OP2 (ENSMPUG00000010483) #22	TM7SF3 (ENSMPUG00000010491) #23	MED21 (ENSMPUG00000010498) #24	STK38L (ENSMPUG00000010502) #27	BMAL2 (ENSMPUG00000010512) #28	SMCO2 (ENSMPUG00000010518) #29	ENSMPUG00000010525 #25
American mink	MODERN SPECIES	96	C2CD5 (ENSNVIG00000000073)	ETNK1 (ENSNVIG00000000767)	ENSNVIG00000000776	SOX5 (ENSNVIG00000000784)	Q68DQ7 (ENSNVIG00000000861)	IRAG2 (ENSNVIG00000000935)	DNAI7 (ENSNVIG00000000988)	ETFRF1 (ENSNVIG00000001147)	RASK (ENSNVIG00000001175)	LMNTD1 (ENSNVIG00000001215)	RASSF8 (ENSNVIG00000001234)	ENSNVIG00000001271	SSPN (ENSNVIG00000001285) #18	ITPR2 (ENSNVIG00000001309) #19	INTS13 (ENSNVIG00000001404) #20	ENSNVIG00000001439 #22	TM7SF3 (ENSNVIG00000001450) #23	MED21 (ENSNVIG00000001510) #24	ENSNVIG00000001519	STK38L (ENSNVIG00000001523) #27	BMAL2 (ENSNVIG00000001547) #28	SMCO2 (ENSNVIG00000001750) #29	PPFIBP1 (ENSNVIG00000001780) #30	C12orf71 (ENSNVIG00000001995) #25	REP15 (ENSNVIG00000002007) #31	RT35 (ENSNVIG00000002013) #32	MANSC4 (ENSNVIG00000002046) #33	KLHL42 (ENSNVIG00000002055) #34
Ursidae	ANCESTRAL SPECIES	25	ENSGT01030000234535.D	ENSGT00390000000212	ENSGT00950000182939.b.a.b	ENSGT00940000156122	ENSGT00390000009532.A.d.a	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00950000182839.B.a.a	ENSGT00940000161014	ENSGT00390000007747 #18	ENSGT00940000156039 #19	ENSGT01030000234582.e.a.j	ENSGT00390000002793 #20	ENSGT00390000018003.b #22	ENSGT00970000193562	ENSGT00390000008702 #23	ENSGT00390000014557 #24	ENSGT00940000153544.b #27	ENSGT00940000160423 #28	ENSGT00940000153380.A #29	ENSGT00390000018322 #25	ENSGT01050000244951.a.a #30	ENSGT00390000005178 #31	ENSGT00390000003443 #32	ENSGT00940000153377.C #33	ENSGT00940000160124 #34	ENSGT00390000004933	ENSGT00390000015899	ENSGT00390000006367.c
Giant Panda	MODERN SPECIES	7	ST8SIA1 (ENSAMEG00000007885)	C2CD5 (ENSAMEG00000007770)	ETNK1 (ENSAMEG00000007754)	SOX5 (ENSAMEG00000007732)	BCAT1 (ENSAMEG00000007615)	IRAG2 (ENSAMEG00000007590)	DNAI7 (ENSAMEG00000007559)	ETFRF1 (ENSAMEG00000030820)	ENSAMEG00000007529	RASSF8 (ENSAMEG00000011910)	BHLHE41 (ENSAMEG00000030378)	SSPN (ENSAMEG00000011902) #18	ITPR2 (ENSAMEG00000011767) #19	ENSAMEG00000011761	INTS13 (ENSAMEG00000011715) #20	FGFR1OP2 (ENSAMEG00000011692) #22	TM7SF3 (ENSAMEG00000011677) #23	MED21 (ENSAMEG00000011670) #24	STK38L (ENSAMEG00000011633) #27	BMAL2 (ENSAMEG00000011610) #28	SMCO2 (ENSAMEG00000011608) #29	PPFIBP1 (ENSAMEG00000011565) #30	ENSAMEG00000011606 #25	REP15 (ENSAMEG00000020274) #31	MRPS35 (ENSAMEG00000011553) #32	MANSC4 (ENSAMEG00000011552) #33	ENSAMEG00000026959 #34	PTHLH (ENSAMEG00000011537)	CCDC91 (ENSAMEG00000011532)	FAR2 (ENSAMEG00000005871)	ERGIC2 (ENSAMEG00000005912)
Ursus	ANCESTRAL SPECIES	155	ENSGT00390000000212	ENSGT00950000182939.b.a.b	ENSGT00950000185059	ENSGT00940000156122	ENSGT00390000009532.A.d.a	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00950000182839.B.a.a	ENSGT00940000161014	ENSGT00390000007747 #18	ENSGT00940000156039 #19	ENSGT01030000234582.e.a.j	ENSGT00390000002793 #20	ENSGT00390000018003.b #22	ENSGT00970000193562	ENSGT00390000008702 #23	ENSGT00390000014557 #24	ENSGT00940000153544.b #27	ENSGT00940000160423 #28
Polar bear	MODERN SPECIES	182	ETNK1 (ENSUMAG00000002922)	ENSUMAG00000002938	ENSUMAG00000002956	ENSUMAG00000003043	BCAT1 (ENSUMAG00000003124)	IRAG2 (ENSUMAG00000003170)	DNAI7 (ENSUMAG00000003217)	ETFRF1 (ENSUMAG00000003271)	KRAS (ENSUMAG00000003274)	RASSF8 (ENSUMAG00000003293)	ENSUMAG00000003300	SSPN (ENSUMAG00000003311) #18	ITPR2 (ENSUMAG00000003322) #19	ENSUMAG00000003389	INTS13 (ENSUMAG00000003398) #20	FGFR1OP2 (ENSUMAG00000003427) #22	ENSUMAG00000003437	TM7SF3 (ENSUMAG00000003462) #23	ENSUMAG00000003616 #24	STK38L (ENSUMAG00000003628) #27	BMAL2 (ENSUMAG00000003681) #28
American black bear	DUPLICATION
American black bear	MODERN SPECIES	1610															ENSUAMG00000008867	ENSUAMG00000008871 #22	HADHB (ENSUAMG00000008876)	HADHA (ENSUAMG00000008883)	GAREM2 (ENSUAMG00000008890)	RAB10 (ENSUAMG00000008895)
American black bear	MODERN SPECIES	4673														INTS13 (ENSUAMG00000001980) #20	ENSUAMG00000001969	FGFR1OP2 (ENSUAMG00000001958) #22	TM7SF3 (ENSUAMG00000001945) #23	ENSUAMG00000001943 #24
Laurasiatheria_c	ANCESTRAL SPECIES	5	ENSGT00390000000212	ENSGT00950000182939.b.a.b	ENSGT00940000156122	ENSGT00390000009532.A.d.a	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182839.B.a.a	ENSGT00940000161014	ENSGT00390000007747 #18	ENSGT00940000156039 #19	ENSGT00940000167397.b	ENSGT00390000002793 #20	ENSGT00390000018003.b #22	ENSGT00390000008702 #23	ENSGT00390000014557 #24	ENSGT00940000153544.b #27	ENSGT00940000160423 #28	ENSGT00940000153380.A #29	ENSGT00390000018322 #25	ENSGT01050000244951.a.a #30	ENSGT00390000005178 #31	ENSGT00390000003443 #32	ENSGT00940000153377.C #33	ENSGT00940000160124 #34	ENSGT00390000004933	ENSGT00390000015899	ENSGT00390000006367.c	ENSGT00530000063113.A
Equus	ANCESTRAL SPECIES	16	ENSGT00390000000212	ENSGT00950000182939.b.a.b	ENSGT00940000156122	ENSGT00390000009532.A.d.a	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182839.B.a.a	ENSGT00940000161014	ENSGT00390000007747 #18	ENSGT00940000156039 #19	ENSGT00940000167397.b	ENSGT00390000002793 #20	ENSGT00390000018003.b #22	ENSGT00390000008702 #23	ENSGT00390000014557 #24	ENSGT00940000153544.b #27	ENSGT00940000160423 #28	ENSGT00940000153380.A #29	ENSGT00390000018322 #25	ENSGT01050000244951.a.a #30	ENSGT00390000005178 #31	ENSGT00390000003443 #32	ENSGT00940000153377.C #33	ENSGT00940000160124 #34	ENSGT00390000004933	ENSGT00390000015899	ENSGT00390000006367.c	ENSGT00530000063113.A
Horse	MODERN SPECIES	27	ETNK1 (ENSECAG00000007231)	SOX5 (ENSECAG00000013978)	BCAT1 (ENSECAG00000020973)	IRAG2 (ENSECAG00000009290)	DNAI7 (ENSECAG00000015808)	ETFRF1 (ENSECAG00000028314)	KRAS (ENSECAG00000019522)	LMNTD1 (ENSECAG00000021424)	ENSECAG00000054536	ENSECAG00000044737	RASSF8 (ENSECAG00000022648)	BHLHE41 (ENSECAG00000034955)	SSPN (ENSECAG00000007530) #18	ITPR2 (ENSECAG00000008131) #19	INTS13 (ENSECAG00000009087) #20	FGFR1OP2 (ENSECAG00000016890) #22	TM7SF3 (ENSECAG00000017496) #23	MED21 (ENSECAG00000023171) #24	STK38L (ENSECAG00000023690) #27	ARNTL2 (ENSECAG00000009925) #28	SMCO2 (ENSECAG00000015434) #29	PPFIBP1 (ENSECAG00000016652) #30	C6H12orf71 (ENSECAG00000015511) #25	REP15 (ENSECAG00000010853) #31	MRPS35 (ENSECAG00000010929) #32	MANSC4 (ENSECAG00000013446) #33	KLHL42 (ENSECAG00000036387) #34	ENSECAG00000033589	PTHLH (ENSECAG00000014708)	CCDC91 (ENSECAG00000014912)	FAR2 (ENSECAG00000018016)
Donkey	MODERN SPECIES	28	C2CD5 (ENSEASG00005013950)	ETNK1 (ENSEASG00005013939)	SOX5 (ENSEASG00005013931)	BCAT1 (ENSEASG00005013924)	ENSEASG00005025148	DNAI7 (ENSEASG00005013908)	ETFRF1 (ENSEASG00005033483)	ENSEASG00005013898	LMNTD1 (ENSEASG00005013897)	RASSF8 (ENSEASG00005013894)	BHLHE41 (ENSEASG00005032416)	SSPN (ENSEASG00005013891) #18	ENSEASG00005030774 #19	ENSEASG00005024061	INTS13 (ENSEASG00005006681) #20	FGFR1OP2 (ENSEASG00005006675) #22	TM7SF3 (ENSEASG00005006672) #23	MED21 (ENSEASG00005006670) #24	STK38L (ENSEASG00005006667) #27	BMAL2 (ENSEASG00005006662) #28	SMCO2 (ENSEASG00005006659) #29	PPFIBP1 (ENSEASG00005006651) #30	ENSEASG00005006657 #25	REP15 (ENSEASG00005024342) #31	MRPS35 (ENSEASG00005006645) #32	MANSC4 (ENSEASG00005006644) #33	KLHL42 (ENSEASG00005006642) #34	PTHLH (ENSEASG00005006639)	CCDC91 (ENSEASG00005006637)	FAR2 (ENSEASG00005006636)	ERGIC2 (ENSEASG00005006634)
Chiroptera	ANCESTRAL SPECIES	4	ENSGT01030000234535.D	ENSGT00390000000212	ENSGT00950000182939.b.a.b	ENSGT00940000156122	ENSGT00390000009532.A.d.a	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182839.B.a.a	ENSGT00940000161014	ENSGT00390000007747 #18	ENSGT00940000156039 #19	ENSGT00390000002793 #20	ENSGT00390000018003.b #22	ENSGT00390000008702 #23	ENSGT00390000014557 #24	ENSGT00940000153544.b #27	ENSGT00940000160423 #28	ENSGT00940000153380.A #29	ENSGT00390000018322 #25	ENSGT01050000244951.a.a #30	ENSGT00390000005178 #31	ENSGT00390000003443 #32	ENSGT00940000153377.C #33	ENSGT00940000160124 #34	ENSGT00390000004933	ENSGT00390000015899	ENSGT00390000006367.c	ENSGT00530000063113.A
Megabat	MODERN SPECIES	286														ITPR2 (ENSPVAG00000013345) #19	INTS13 (ENSPVAG00000013350) #20	FGFR1OP2 (ENSPVAG00000013353) #22	TM7SF3 (ENSPVAG00000013355) #23	MED21 (ENSPVAG00000013357) #24
Microchiroptera	ANCESTRAL SPECIES	8	ENSGT01030000234535.D	ENSGT00390000000212	ENSGT00950000182939.b.a.b	ENSGT00940000156122	ENSGT00390000009532.A.d.a	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182839.B.a.a	ENSGT00940000161014	ENSGT00390000007747 #18	ENSGT00940000156039 #19	ENSGT00390000002793 #20	ENSGT00390000018003.b #22	ENSGT00390000008702 #23	ENSGT00390000014557 #24	ENSGT00940000153544.b #27	ENSGT00940000160423 #28	ENSGT00940000153380.A #29	ENSGT00390000018322 #25	ENSGT01050000244951.a.a #30	ENSGT00390000005178 #31	ENSGT00390000003443 #32	ENSGT00940000153377.C #33	ENSGT00940000160124 #34	ENSGT00390000004933	ENSGT00390000015899	ENSGT00390000006367.c	ENSGT00530000063113.A
Microbat	MODERN SPECIES	1387												BHLHE41 (ENSMLUG00000028371)	SSPN (ENSMLUG00000011338) #18	ITPR2 (ENSMLUG00000011355) #19	INTS13 (ENSMLUG00000012374) #20	FGFR1OP2 (ENSMLUG00000007652) #22	TM7SF3 (ENSMLUG00000007662) #23	ENSMLUG00000007678 #24
Greater horseshoe bat	MODERN SPECIES	1	ST8SIA1 (ENSRFEG00010000498)	C2CD5 (ENSRFEG00010000717)	ETNK1 (ENSRFEG00010001194)	ENSRFEG00010001212	ENSRFEG00010001226	SOX5 (ENSRFEG00010001299)	BCAT1 (ENSRFEG00010001433)	ENSRFEG00010001489	DNAI7 (ENSRFEG00010001662)	ETFRF1 (ENSRFEG00010001789)	RASSF8 (ENSRFEG00010001871)	BHLHE41 (ENSRFEG00010001889)	SSPN (ENSRFEG00010001911) #18	ITPR2 (ENSRFEG00010002029) #19	INTS13 (ENSRFEG00010002148) #20	FGFR1OP2 (ENSRFEG00010002209) #22	TM7SF3 (ENSRFEG00010002233) #23	ENSRFEG00010002256 #24	ENSRFEG00010002266	STK38L (ENSRFEG00010002281) #27	BMAL2 (ENSRFEG00010002334) #28	SMCO2 (ENSRFEG00010002436) #29	PPFIBP1 (ENSRFEG00010002571) #30	C12orf71 (ENSRFEG00010002877) #25	REP15 (ENSRFEG00010002894) #31	MRPS35 (ENSRFEG00010002911) #32	MANSC4 (ENSRFEG00010002930) #33	KLHL42 (ENSRFEG00010002946) #34	PTHLH (ENSRFEG00010002971)	CCDC91 (ENSRFEG00010003047)	FAR2 (ENSRFEG00010003120)
Atlantogenata	ANCESTRAL SPECIES	5	ENSGT01030000234535.D	ENSGT00390000000212	ENSGT00950000182939.b.a.b	ENSGT00940000156122	ENSGT00390000009532.A.d.a	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182839.B.a.a	ENSGT00940000161014	ENSGT00390000007747 #18	ENSGT00940000156039 #19	ENSGT00390000002793 #20	ENSGT00390000018003.b #22	ENSGT00390000008702 #23	ENSGT00390000014557 #24	ENSGT00940000153544.b #27	ENSGT00940000160423 #28	ENSGT00940000153380.A #29	ENSGT00390000018322 #25	ENSGT01050000244951.a.a #30	ENSGT00390000005178 #31	ENSGT00390000003443 #32	ENSGT00940000153377.C #33	ENSGT00940000160124 #34	ENSGT00390000004933	ENSGT00390000015899	ENSGT00390000006367.c	ENSGT00530000063113.A
Xenarthra	ANCESTRAL SPECIES	126						ENSGT00940000156122	ENSGT00390000009532.A.d.a	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00950000182839.B.a.a	ENSGT00390000007747 #18	ENSGT00940000156039 #19	ENSGT00390000002793 #20	ENSGT00390000018003.b #22	ENSGT00390000008702 #23	ENSGT00390000014557 #24	ENSGT00940000153544.b #27	ENSGT00940000160423 #28	ENSGT00940000153380.A #29	ENSGT01050000244951.a.a #30	ENSGT00390000003443 #32	ENSGT00940000153377.C #33	ENSGT00940000160124 #34	ENSGT00390000004933	ENSGT00390000015899
Sloth	MODERN SPECIES	11691																FGFR1OP2 (ENSCHOG00000011615) #22
Armadillo	MODERN SPECIES	4066					SOX5 (ENSDNOG00000019346)	BCAT1 (ENSDNOG00000005608)	ENSDNOG00000032383	DNAI7 (ENSDNOG00000000445)	ETFRF1 (ENSDNOG00000018534)	KRAS (ENSDNOG00000046741)	ENSDNOG00000044438	RASSF8 (ENSDNOG00000048366)	SSPN (ENSDNOG00000045508) #18	ITPR2 (ENSDNOG00000005229) #19	INTS13 (ENSDNOG00000012051) #20	FGFR1OP2 (ENSDNOG00000006966) #22	TM7SF3 (ENSDNOG00000010018) #23	MED21 (ENSDNOG00000010041) #24	ENSDNOG00000025573 #27
Afrotheria	ANCESTRAL SPECIES	56	ENSGT01030000234535.D	ENSGT00390000000212	ENSGT00950000182939.b.a.b	ENSGT00940000156122	ENSGT00390000009532.A.d.a	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182839.B.a.a	ENSGT00940000161014	ENSGT00390000007747 #18	ENSGT00940000156039 #19	ENSGT00390000002793 #20	ENSGT00390000018003.b #22	ENSGT00390000008702 #23	ENSGT00390000014557 #24	ENSGT00940000153544.b #27	ENSGT00940000160423 #28	ENSGT00940000153380.A #29	ENSGT00390000018322 #25	ENSGT01050000244951.a.a #30	ENSGT00390000005178 #31	ENSGT00390000003443 #32	ENSGT00940000153377.C #33	ENSGT00940000160124 #34	ENSGT00390000004933	ENSGT00390000006367.c	ENSGT00530000063113.A
Tenrec	MODERN SPECIES	4637															INTS13 (ENSETEG00000020311) #20	ENSETEG00000020312 #22
Afrotheria_a	ANCESTRAL SPECIES	53	ENSGT01030000234535.D	ENSGT00390000000212	ENSGT00950000182939.b.a.b	ENSGT00940000156122	ENSGT00390000009532.A.d.a	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182839.B.a.a	ENSGT00940000161014	ENSGT00390000007747 #18	ENSGT00940000156039 #19	ENSGT00390000002793 #20	ENSGT00390000018003.b #22	ENSGT00390000008702 #23	ENSGT00390000014557 #24	ENSGT00940000153544.b #27	ENSGT00940000160423 #28	ENSGT00940000153380.A #29	ENSGT00390000018322 #25	ENSGT01050000244951.a.a #30	ENSGT00390000005178 #31	ENSGT00390000003443 #32	ENSGT00940000153377.C #33	ENSGT00940000160124 #34	ENSGT00390000004933	ENSGT00390000006367.c	ENSGT00530000063113.A
Elephant	MODERN SPECIES	196	ST8SIA1 (ENSLAFG00000010423)	C2CD5 (ENSLAFG00000022820)	ETNK1 (ENSLAFG00000015898)	SOX5 (ENSLAFG00000014616)	BCAT1 (ENSLAFG00000017969)	IRAG2 (ENSLAFG00000012434)	DNAI7 (ENSLAFG00000012438)	ETFRF1 (ENSLAFG00000008272)	KRAS (ENSLAFG00000029239)	LMNTD1 (ENSLAFG00000004100)	RASSF8 (ENSLAFG00000026594)	ENSLAFG00000030711	SSPN (ENSLAFG00000005676) #18	ENSLAFG00000005681 #19	INTS13 (ENSLAFG00000012475) #20	FGFR1OP2 (ENSLAFG00000012476) #22	TM7SF3 (ENSLAFG00000012482) #23	MED21 (ENSLAFG00000030391) #24	STK38L (ENSLAFG00000020791) #27	BMAL2 (ENSLAFG00000002612) #28	SMCO2 (ENSLAFG00000002614) #29	C12orf71 (ENSLAFG00000027809) #25	PPFIBP1 (ENSLAFG00000010485) #30	MRPS35 (ENSLAFG00000010490) #32	MANSC4 (ENSLAFG00000010493) #33	KLHL42 (ENSLAFG00000027183) #34	PTHLH (ENSLAFG00000016512)	FAR2 (ENSLAFG00000004527)	ERGIC2 (ENSLAFG00000010837)	ENSLAFG00000003057	TMTC1 (ENSLAFG00000003063)
Hyrax	MODERN SPECIES	4122															INTS13 (ENSPCAG00000008225) #20	FGFR1OP2 (ENSPCAG00000008308) #22	TM7SF3 (ENSPCAG00000008341) #23
Marsupialia	ANCESTRAL SPECIES	4	ENSGT00950000182939.b.a.b	ENSGT00390000009210	ENSGT00940000156122	ENSGT00390000009532.A.d.a	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182839.B.a.a	ENSGT00940000161014	ENSGT00390000007747 #18	ENSGT00940000156039 #19	ENSGT00940000155614	ENSGT00390000002793 #20	ENSGT00390000018003.b #22	ENSGT00970000193562	ENSGT00390000008702 #23	ENSGT00390000014557 #24	ENSGT00940000153544.b.m.a #27	ENSGT00790000123099	ENSGT00950000182835.d.b	ENSGT00940000157638	ENSGT00940000158123	ENSGT00940000158317	ENSGT00940000157945	ENSGT00390000005903	ENSGT00390000006837	ENSGT00900000143702	ENSGT00710000106806	ENSGT00940000159247
Opossum	DUPLICATION
Opossum	DUPLICATION
Opossum	DUPLICATION
Opossum	MODERN SPECIES		UBE2G1 (ENSMODG00000024678)	ENSMODG00000051343	ENSMODG00000048716	NR2F2 (ENSMODG00000012819)	ENSMODG00000012810	ENSMODG00000001936	ENSMODG00000045377	ARRDC4 (ENSMODG00000012796)	ENSMODG00000028693	ENSMODG00000012771	IGF1R (ENSMODG00000012761)	ENSMODG00000039789	ENSMODG00000012752	TTC23 (ENSMODG00000012741)	LRRC28 (ENSMODG00000012729)	ENSMODG00000012734 #22	MEF2A (ENSMODG00000012725)	LYSMD4 (ENSMODG00000012716)	ADAMTS17 (ENSMODG00000012713)	CERS3 (ENSMODG00000012165)	LINS1 (ENSMODG00000012160)	ASB7 (ENSMODG00000038455)	ALDH1A3 (ENSMODG00000012141)	LRRK1 (ENSMODG00000012068)	CHSY1 (ENSMODG00000012037)	SELENOS (ENSMODG00000012032)	SNRPA1 (ENSMODG00000012020)	PCSK6 (ENSMODG00000012001)	TM2D3 (ENSMODG00000011956)	TARS3 (ENSMODG00000011941)	TJP1 (ENSMODG00000011885)
Opossum	MODERN SPECIES		ENSMODG00000023081	ENSMODG00000023080	ENSMODG00000045063	ENSMODG00000047520	ENSMODG00000050365	ENSMODG00000007750	ENSMODG00000023079	ENSMODG00000007702	ENSMODG00000045190	ENSMODG00000045854	ENSMODG00000007741	ENSMODG00000023077	ENSMODG00000007896	ENSMODG00000051132	ENSMODG00000037214	ENSMODG00000013714 #22	ENSMODG00000051112	ENSMODG00000007904	ENSMODG00000007910	ENSMODG00000007948	ENSMODG00000041989	ENSMODG00000008031	ENSMODG00000043313	ADAMTS18 (ENSMODG00000008070)	ENSMODG00000008089	ENSMODG00000038893	VAT1L (ENSMODG00000008102)	CLEC3A (ENSMODG00000008109)	ENSMODG00000040703	ENSMODG00000008124	ENSMODG00000047532
Opossum	MODERN SPECIES		CNOT6 (ENSMODG00000003979)	GFPT2 (ENSMODG00000003969)	MAPK9 (ENSMODG00000003946)	ENSMODG00000003922	FLT4 (ENSMODG00000003918)	ENSMODG00000003904	TBC1D9B (ENSMODG00000003882)	SQSTM1 (ENSMODG00000003806)	MGAT4B (ENSMODG00000003778)	LTC4S (ENSMODG00000003733)	MAML1 (ENSMODG00000003725)	ENSMODG00000003708	ENSMODG00000003673	L3MBTL1 (ENSMODG00000003647)	SRSF6 (ENSMODG00000003107)	ENSMODG00000023076 #22	TOX2 (ENSMODG00000003070)	SNTA1 (ENSMODG00000003050)	CBFA2T2 (ENSMODG00000003023)	NECAB3 (ENSMODG00000002977)	ENSMODG00000002993	ENSMODG00000002988	E2F1 (ENSMODG00000002875)	PXMP4 (ENSMODG00000002864)	ZNF341 (ENSMODG00000002856)	CHMP4B (ENSMODG00000002830)	ENSMODG00000002836	RALY (ENSMODG00000002819)	EIF2S2 (ENSMODG00000002805)	ENSMODG00000002765	ASIP (ENSMODG00000002762)
Opossum	MODERN SPECIES	7	ENSMODG00000018535	IRAK4 (ENSMODG00000018536)	ENSMODG00000025457	ABCD2 (ENSMODG00000018538)	ENSMODG00000039233	ENSMODG00000042610	ENSMODG00000018544	SLC2A13 (ENSMODG00000018552)	LRRK2 (ENSMODG00000018556)	RASSF8 (ENSMODG00000016548)	BHLHE41 (ENSMODG00000016551)	ENSMODG00000016554 #18	ITPR2 (ENSMODG00000016591) #19	SMC1A (ENSMODG00000016607)	INTS13 (ENSMODG00000016614) #20	ENSMODG00000016618 #22	ENSMODG00000045064	TM7SF3 (ENSMODG00000016621) #23	MED21 (ENSMODG00000047408) #24	ENSMODG00000039197	ENSMODG00000016636 #27	RBM17 (ENSMODG00000016648)	PFKFB3 (ENSMODG00000016654)	PRKCQ (ENSMODG00000016663)	ENSMODG00000038661	SFMBT2 (ENSMODG00000016677)	ITIH5 (ENSMODG00000016687)	ITIH2 (ENSMODG00000016710)	KIN (ENSMODG00000016717)	ATP5F1C (ENSMODG00000016720)	ENSMODG00000038818
Marsupialia_b	ANCESTRAL SPECIES	12	ENSGT00950000182939.b.a.b	ENSGT00390000009210	ENSGT00940000156122	ENSGT00390000009532.A.d.a	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182839.B.a.a	ENSGT00940000161014	ENSGT00390000007747 #18	ENSGT00940000156039 #19	ENSGT00940000155614	ENSGT00390000002793 #20	ENSGT00390000018003.b #22	ENSGT00970000193562	ENSGT00390000008702 #23	ENSGT00390000014557 #24	ENSGT00940000153544.b.m.a #27	ENSGT00940000160423 #28	ENSGT00790000123099	ENSGT00950000182835.d.b	ENSGT00940000157638	ENSGT00940000158123	ENSGT00940000158317	ENSGT00940000157945	ENSGT00390000005903	ENSGT00390000006837	ENSGT00710000106806	ENSGT00940000159247
Diprotodontia	ANCESTRAL SPECIES	16	ENSGT00950000182939.b.a.b	ENSGT00390000009210	ENSGT00940000156122	ENSGT00390000009532.A.d.a	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182839.B.a.a	ENSGT00940000161014	ENSGT00390000007747 #18	ENSGT00940000156039 #19	ENSGT00390000002793 #20	ENSGT00970000193562	ENSGT00390000018003.b #22	ENSGT00390000008702 #23	ENSGT00390000014557 #24	ENSGT00940000153544.b.m.a #27	ENSGT00940000153544.b.m.b #27	ENSGT00940000160423 #28	ENSGT00790000123099	ENSGT00950000182835.d.b	ENSGT00940000157638	ENSGT00940000158123	ENSGT00940000158317	ENSGT00940000157945	ENSGT00390000005903	ENSGT00390000006837	ENSGT00710000106806	ENSGT00940000159247
Diprotodontia_a	ANCESTRAL SPECIES	18	ENSGT00390000009210	ENSGT00940000156122	ENSGT00390000009532.A.d.a	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182839.B.a.a	ENSGT00940000161014	ENSGT00390000007747 #18	ENSGT00940000155614	ENSGT00940000156039 #19	ENSGT00390000002793 #20	ENSGT00970000193562	ENSGT00390000018003.b #22	ENSGT00390000008702 #23	ENSGT00390000014557 #24	ENSGT00940000153544.b.m.a.a #27	ENSGT00940000160423 #28	ENSGT00950000182835.d.b	ENSGT00940000157638	ENSGT00940000158123	ENSGT00940000158317	ENSGT00940000157945	ENSGT00390000005903	ENSGT00390000006837	ENSGT00710000106806	ENSGT00940000159247	ENSGT00940000164454.g	ENSGT00940000155461.E
Common wonbat	DUPLICATION
Common wonbat	MODERN SPECIES	1064	ST8SIA1 (ENSVURG00010016229)	C2CD5 (ENSVURG00010016161)	ETNK1 (ENSVURG00010016127)	ENSVURG00010016116	SOX5 (ENSVURG00010016055)	BCAT1 (ENSVURG00010015554)	DNAI7 (ENSVURG00010015507)	ETFRF1 (ENSVURG00010015499)	KRAS (ENSVURG00010015490)	RASSF8 (ENSVURG00010015473)	BHLHE41 (ENSVURG00010015466)	ENSVURG00010015454 #18	SMC1A (ENSVURG00010015442)	ITPR2 (ENSVURG00010015309) #19	INTS13 (ENSVURG00010015245) #20	ENSVURG00010015223 #22	TM7SF3 (ENSVURG00010015203) #23	MED21 (ENSVURG00010015164) #24	STK38L (ENSVURG00010015140) #27	BMAL2 (ENSVURG00010015116) #28	ENSVURG00010015086	PRKCQ (ENSVURG00010014603)	ENSVURG00010014550	ITIH5 (ENSVURG00010014526)	ITIH2 (ENSVURG00010014510)	KIN (ENSVURG00010014473)	ENSVURG00010014444	TAF3 (ENSVURG00010014417)	GATA3 (ENSVURG00010014394)	ENSVURG00010014377	ENSVURG00010014355
Common wonbat	MODERN SPECIES	740	PROSER1 (ENSVURG00010017274)	STOML3 (ENSVURG00010017258)	FREM2 (ENSVURG00010017236)	UFM1 (ENSVURG00010017221)	ENSVURG00010017206	TRPC4 (ENSVURG00010017160)	POSTN (ENSVURG00010016998)	ENSVURG00010016975	SUPT20H (ENSVURG00010016704)	ENSVURG00010016647	ALG5 (ENSVURG00010016628)	ENSVURG00010016609	SERTM1 (ENSVURG00010016595)	CCNA1 (ENSVURG00010016560)	ENSVURG00010016548	ENSVURG00010016542 #22
koala	MODERN SPECIES	157			BCAT1 (ENSPCIG00000028646)	IRAG2 (ENSPCIG00000014217)	DNAI7 (ENSPCIG00000014221)	ENSPCIG00000032167	KRAS (ENSPCIG00000014229)	ENSPCIG00000028658	RASSF8 (ENSPCIG00000028660)	BHLHE41 (ENSPCIG00000028661)	SSPN (ENSPCIG00000002872) #18	SMC1A (ENSPCIG00000013481)	ITPR2 (ENSPCIG00000013497) #19	INTS13 (ENSPCIG00000019233) #20	ENSPCIG00000019238	FGFR1OP2 (ENSPCIG00000019236) #22	TM7SF3 (ENSPCIG00000019239) #23	MED21 (ENSPCIG00000019241) #24	ENSPCIG00000035681	ENSPCIG00000019245 #27	ENSPCIG00000032191 #27	BMAL2 (ENSPCIG00000019259) #28	ENSPCIG00000019260	PFKFB3 (ENSPCIG00000019262)	PRKCQ (ENSPCIG00000018916)	SFMBT2 (ENSPCIG00000017345)	ITIH5 (ENSPCIG00000017342)	ITIH2 (ENSPCIG00000017340)	ENSPCIG00000017339	KIN (ENSPCIG00000017338)	ATP5F1C (ENSPCIG00000017337)
Wallaby	MODERN SPECIES	2044																ENSMEUG00000004570 #22
Tasmanian devil	MODERN SPECIES	4	C2CD5 (ENSSHAG00000026240)	ETNK1 (ENSSHAG00000024329)	ENSSHAG00000028766	SOX5 (ENSSHAG00000032245)	BCAT1 (ENSSHAG00000002407)	IRAG2 (ENSSHAG00000004469)	DNAI7 (ENSSHAG00000005318)	KRAS (ENSSHAG00000006631)	ENSSHAG00000009195	RASSF8 (ENSSHAG00000012373)	BHLHE41 (ENSSHAG00000028369)	SSPN (ENSSHAG00000028577) #18	ITPR2 (ENSSHAG00000002089) #19	ENSSHAG00000006912	INTS13 (ENSSHAG00000009510) #20	FGFR1OP2 (ENSSHAG00000009822) #22	ENSSHAG00000022761	TM7SF3 (ENSSHAG00000010020) #23	MED21 (ENSSHAG00000029070) #24	STK38L (ENSSHAG00000011764) #27	ENSSHAG00000025940 #28	ENSSHAG00000012480	ENSSHAG00000013183	PRKCQ (ENSSHAG00000014158)	SFMBT2 (ENSSHAG00000016894)	ITIH5 (ENSSHAG00000017819)	ITIH2 (ENSSHAG00000017960)	KIN (ENSSHAG00000018030)	ATP5F1C (ENSSHAG00000018089)	TAF3 (ENSSHAG00000025039)	GATA3 (ENSSHAG00000018350)
Platypus	MODERN SPECIES	11	C2CD5 (ENSOANG00000031241)	ETNK1 (ENSOANG00000041921)	SOX5 (ENSOANG00000042173)	BCAT1 (ENSOANG00000013411)	ENSOANG00000038600	ENSOANG00000045289	ETFRF1 (ENSOANG00000012351)	KRAS (ENSOANG00000037990)	ENSOANG00000043766	RASSF8 (ENSOANG00000046756)	ENSOANG00000040055	SSPN (ENSOANG00000045085) #18	ITPR2 (ENSOANG00000047995) #19	INTS13 (ENSOANG00000020224) #20	ENSOANG00000049521	FGFR1OP2 (ENSOANG00000047307) #22	TM7SF3 (ENSOANG00000044283) #23	MED21 (ENSOANG00000040060) #24	STK38L (ENSOANG00000030510) #27	PPFIBP1 (ENSOANG00000006286) #30	RPL18A (ENSOANG00000009129)	KICS2 (ENSOANG00000043854)	SRGAP1 (ENSOANG00000047717)	RXYLT1 (ENSOANG00000008734)	AVPR1A (ENSOANG00000002085)	PPM1H (ENSOANG00000014788)	MON2 (ENSOANG00000010807)	USP15 (ENSOANG00000010808)	TAFA2 (ENSOANG00000014659)	SLC16A7 (ENSOANG00000009924)	LRIG3 (ENSOANG00000007758)
Sauria	ANCESTRAL SPECIES	4	ENSGT00940000153525	ENSGT00540000073481	ENSGT00390000018612.a.b	ENSGT00390000012501	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182839.B.a.a	ENSGT00940000161014	ENSGT00390000007747 #18	ENSGT00940000156039 #19	ENSGT00940000167397.b	ENSGT00390000002793 #20	ENSGT00390000018003.b #22	ENSGT00390000008702 #23	ENSGT00390000014557 #24	ENSGT00940000162660.a	ENSGT00940000153544.b #27	ENSGT00940000160423 #28	ENSGT00940000169031 #26	ENSGT01050000244951.a.a #30	ENSGT00390000005178 #31	ENSGT00940000153962.b	ENSGT00530000063825.A.c	ENSGT00510000047981.c	ENSGT00940000158466	ENSGT00950000182973.a.c.b	ENSGT00940000156720	ENSGT01030000235072
Archelosauria	ANCESTRAL SPECIES	3	ENSGT00990000203615.a.a.b	ENSGT00940000153525	ENSGT00540000073481	ENSGT00390000018612.a.b	ENSGT00390000012501	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182839.B.a.a	ENSGT00940000161014	ENSGT00390000007747 #18	ENSGT00940000156039 #19	ENSGT00390000002793 #20	ENSGT00390000018003.b #22	ENSGT00390000008702 #23	ENSGT00390000014557 #24	ENSGT00940000162660.a	ENSGT00940000153544.b #27	ENSGT00940000160423 #28	ENSGT01050000244951.a.a #30	ENSGT00390000005178 #31	ENSGT00940000153962.b	ENSGT00530000063825.A.c	ENSGT00510000047981.c	ENSGT00940000158466	ENSGT00950000182973.a.c.b	ENSGT00940000156720	ENSGT01030000235072	ENSGT00390000013715
Archosauria	ANCESTRAL SPECIES	4	ENSGT00940000156680.b.b	ENSGT00990000203615.a.a.b	ENSGT00940000153525	ENSGT00390000018612.a.b	ENSGT00390000012501	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182839.B.a.a	ENSGT00940000161014	ENSGT00390000007747 #18	ENSGT00940000156039 #19	ENSGT00390000002793 #20	ENSGT00390000018003.b #22	ENSGT00390000008702 #23	ENSGT00390000014557 #24	ENSGT00940000153544.b #27	ENSGT00940000160423 #28	ENSGT01050000244951.a.a #30	ENSGT00390000005178 #31	ENSGT00940000153962.b	ENSGT00530000063825.A.c	ENSGT00510000047981.c	ENSGT00940000158466	ENSGT00950000182973.a.c.b	ENSGT00940000156720	ENSGT01030000235072	ENSGT00390000013715	ENSGT00390000012980.a
Aves	ANCESTRAL SPECIES	1	ENSGT00940000156680.b.b	ENSGT00990000203615.a.a.b	ENSGT00940000153525	ENSGT00390000018612.a.b	ENSGT00390000012501	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182839.B.a.a	ENSGT00940000161014	ENSGT00390000007747 #18	ENSGT00940000156039 #19	ENSGT00390000002793 #20	ENSGT00390000018003.b #22	ENSGT00390000008702 #23	ENSGT00390000014557 #24	ENSGT00940000153544.b #27	ENSGT00940000160423 #28	ENSGT01050000244951.a.a #30	ENSGT00390000005178 #31	ENSGT00940000153962.b	ENSGT00530000063825.A.c	ENSGT00510000047981.c	ENSGT00940000158466	ENSGT00950000182973.a.c.b	ENSGT00940000156720	ENSGT01030000235072	ENSGT00390000013715	ENSGT00390000012980.a
Neognathae	ANCESTRAL SPECIES	3	ENSGT00940000156680.b.b	ENSGT00990000203615.a.a.b	ENSGT00940000153525	ENSGT00390000018612.a.b	ENSGT00390000012501	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182839.B.a.a	ENSGT00940000161014	ENSGT00390000007747 #18	ENSGT00940000156039 #19	ENSGT00390000002793 #20	ENSGT00390000018003.b #22	ENSGT00390000008702 #23	ENSGT00390000014557 #24	ENSGT00940000153544.b #27	ENSGT00940000160423 #28	ENSGT01050000244951.a.a #30	ENSGT00390000005178 #31	ENSGT00940000153962.b	ENSGT00530000063825.A.c	ENSGT00510000047981.c	ENSGT00940000158466	ENSGT00950000182973.a.c.b	ENSGT00940000156720	ENSGT01030000235072	ENSGT00390000013715	ENSGT00390000012980.a
Galloanserae	ANCESTRAL SPECIES	3	ENSGT00940000156680.b.b	ENSGT00990000203615.a.a.b	ENSGT00940000153525	ENSGT00390000018612.a.b	ENSGT00390000012501	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00990000206817	ENSGT00950000182839.B.a.a	ENSGT00940000161014	ENSGT00390000007747 #18	ENSGT00940000156039 #19	ENSGT00390000002793 #20	ENSGT00390000018003.b #22	ENSGT00390000008702 #23	ENSGT00390000014557 #24	ENSGT00940000153544.b #27	ENSGT00940000160423 #28	ENSGT01050000244951.a.a #30	ENSGT00390000005178 #31	ENSGT00940000153962.b	ENSGT00510000047981.c	ENSGT00940000158466	ENSGT00950000182973.a.c.b	ENSGT00940000156720	ENSGT01030000235072	ENSGT00390000013715	ENSGT00390000012980.a	ENSGT00390000006760
Anatidae	ANCESTRAL SPECIES	8	ENSGT00940000156680.b.b	ENSGT00990000203615.a.a.b	ENSGT00940000153525	ENSGT00390000018612.a.b	ENSGT00390000012501	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00990000206817	ENSGT00950000182839.B.a.a	ENSGT00940000161014	ENSGT00390000007747 #18	ENSGT00940000156039 #19	ENSGT00390000002793 #20	ENSGT00390000018003.b #22	ENSGT00390000008702 #23	ENSGT00390000014557 #24	ENSGT00940000153544.b #27	ENSGT00940000160423 #28	ENSGT01050000244951.a.a #30	ENSGT00390000005178 #31	ENSGT00940000153962.b	ENSGT00510000047981.c	ENSGT00940000158466	ENSGT00950000182973.a.c.b	ENSGT00940000156720	ENSGT01030000235072	ENSGT00390000013715	ENSGT00390000012980.a	ENSGT00390000006760
Duck	MODERN SPECIES		KCNJ8 (ENSAPLG00000016438)	LDHB (ENSAPLG00000016403)	ENSAPLG00000026669	GYS2 (ENSAPLG00000016252)	SPX (ENSAPLG00000016220)	IRAG2 (ENSAPLG00000016181)	DNAI7 (ENSAPLG00000015977)	ETFRF1 (ENSAPLG00000015974)	KRAS (ENSAPLG00000015953)	ENSAPLG00000028893	RASSF8 (ENSAPLG00000024358)	BHLHE41 (ENSAPLG00000023232)	SSPN (ENSAPLG00000022486) #18	ITPR2 (ENSAPLG00000014956) #19	INTS13 (ENSAPLG00000007349) #20	FGFR1OP2 (ENSAPLG00000007905) #22	TM7SF3 (ENSAPLG00000008163) #23	ENSAPLG00000028939	MED21 (ENSAPLG00000017333) #24	STK38L (ENSAPLG00000008495) #27	BMAL2 (ENSAPLG00000008758) #28	ENSAPLG00000025790 #30	ENSAPLG00000009279 #30	REP15 (ENSAPLG00000001232) #31	CYB5R3 (ENSAPLG00000009751)	ENSAPLG00000021401	A4GALT (ENSAPLG00000001237)	ENSAPLG00000014423	ENSAPLG00000023088	ENSAPLG00000023309	PACSIN2 (ENSAPLG00000009134)
Pink-footed goose	MODERN SPECIES	235																FGFR1OP2 (ENSABRG00000003521) #22	TM7SF3 (ENSABRG00000003535) #23	MED21 (ENSABRG00000003551) #24	STK38L (ENSABRG00000003649) #27	BMAL2 (ENSABRG00000004330) #28	PPFIBP1 (ENSABRG00000004742) #30	REP15 (ENSABRG00000008500) #31	CYB5R3 (ENSABRG00000008517)	A4GALT (ENSABRG00000008681)	ARFGAP3 (ENSABRG00000008695)	PACSIN2 (ENSABRG00000008709)	TTLL1 (ENSABRG00000008733)	ENSABRG00000008742	MCAT (ENSABRG00000008755)	TSPO (ENSABRG00000008814)	TTLL12 (ENSABRG00000008846)
Phasianidae	ANCESTRAL SPECIES		ENSGT00390000004237	ENSGT00940000156680.b.b	ENSGT00990000203615.a.a.b	ENSGT00940000153525	ENSGT00390000018612.a.b	ENSGT00390000012501	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00950000182839.B.a.a	ENSGT00940000161014	ENSGT00390000007747 #18	ENSGT00940000156039 #19	ENSGT00390000002793 #20	ENSGT00390000018003.b #22	ENSGT00390000008702 #23	ENSGT00390000014557 #24	ENSGT00940000153544.b #27	ENSGT00940000160423 #28	ENSGT01050000244951.a.a #30	ENSGT00940000153962.b	ENSGT00510000047981.c	ENSGT00940000158466	ENSGT00950000182973.a.c.b	ENSGT00940000156720	ENSGT01030000235072	ENSGT00390000013715	ENSGT00390000012980.a	ENSGT00390000006760	ENSGT00940000153185.a.a.a
Phasianidae_b	ANCESTRAL SPECIES		ENSGT00390000004237	ENSGT00940000156680.b.b	ENSGT00990000203615.a.a.b	ENSGT00940000153525	ENSGT00390000018612.a.b	ENSGT00390000012501	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00950000182839.B.a.a	ENSGT00940000161014	ENSGT00390000007747 #18	ENSGT00940000156039 #19	ENSGT00390000002793 #20	ENSGT00390000018003.b #22	ENSGT00390000008702 #23	ENSGT00390000014557 #24	ENSGT00940000153544.b #27	ENSGT00940000160423 #28	ENSGT01050000244951.a.a #30	ENSGT00940000153962.b	ENSGT00530000063825.A.c	ENSGT00940000157452.s.a.c.b	ENSGT00510000047981.c	ENSGT00940000158466	ENSGT00950000182973.a.c.b	ENSGT00940000156720	ENSGT01030000235072	ENSGT00390000013715	ENSGT00390000012980.a
Chicken	MODERN SPECIES		ABCC9 (ENSGALG00010013156)	KCNJ8 (ENSGALG00010013173)	LDHB (ENSGALG00010013184)	GYS2 (ENSGALG00010013201)	SPX (ENSGALG00010013963)	IRAG2 (ENSGALG00010014019)	DNAI7 (ENSGALG00010014154)	ETFRF1 (ENSGALG00010014213)	KRAS (ENSGALG00010014246)	RASSF8 (ENSGALG00010014328)	BHLHE41 (ENSGALG00010014338)	SSPN (ENSGALG00010014361) #18	ITPR2 (ENSGALG00010014477) #19	ENSGALG00010014697	INTS13 (ENSGALG00010014728) #20	FGFR1OP2 (ENSGALG00010014748) #22	TM7SF3 (ENSGALG00010014839) #23	MED21 (ENSGALG00010014861) #24	STK38L (ENSGALG00010012896) #27	ARNTL2 (ENSGALG00010012985) #28	PPFIBP1 (ENSGALG00010013123) #30	A4GALT (ENSGALG00010012867)	ENSGALG00010013167	ENSGALG00010013176	ARFGAP3 (ENSGALG00010012147)	PACSIN2 (ENSGALG00010012175)	TTLL1 (ENSGALG00010012193)	BIK (ENSGALG00010011907)	MCAT (ENSGALG00010011916)	TSPO (ENSGALG00010011930)	TTLL12 (ENSGALG00010011943)
Turkey	MODERN SPECIES		ABCC9 (ENSMGAG00000013655)	KCNJ8 (ENSMGAG00000013654)	LDHB (ENSMGAG00000013702)	GYS2 (ENSMGAG00000013698)	ENSMGAG00000018603	SPX (ENSMGAG00000013697)	IRAG2 (ENSMGAG00000013692)	DNAI7 (ENSMGAG00000013688)	ETFRF1 (ENSMGAG00000022020)	KRAS (ENSMGAG00000013673)	ENSMGAG00000020387	ENSMGAG00000013685	SSPN (ENSMGAG00000013734) #18	ITPR2 (ENSMGAG00000013722) #19	INTS13 (ENSMGAG00000013714) #20	FGFR1OP2 (ENSMGAG00000013712) #22	TM7SF3 (ENSMGAG00000013710) #23	MED21 (ENSMGAG00000013707) #24	STK38L (ENSMGAG00000013742) #27	BMAL2 (ENSMGAG00000013735) #28	PPFIBP1 (ENSMGAG00000013758) #30	ENSMGAG00000013756	ENSMGAG00000013754	ENSMGAG00000013753	A4GALT (ENSMGAG00000015995)	ENSMGAG00000013745	PACSIN2 (ENSMGAG00000013743)	ENSMGAG00000013804	ENSMGAG00000013805	ENSMGAG00000013806	ENSMGAG00000013808
Japanese quail	MODERN SPECIES		ABCC9 (ENSCJPG00005003226)	KCNJ8 (ENSCJPG00005003236)	LDHB (ENSCJPG00005003238)	GYS2 (ENSCJPG00005003244)	SPX (ENSCJPG00005003246)	ENSCJPG00005003254	DNAI7 (ENSCJPG00005003259)	ETFRF1 (ENSCJPG00005003264)	KRAS (ENSCJPG00005003266)	RASSF8 (ENSCJPG00005003275)	BHLHE41 (ENSCJPG00005003277)	SSPN (ENSCJPG00005003282) #18	ITPR2 (ENSCJPG00005003455) #19	ENSCJPG00005014196	INTS13 (ENSCJPG00005014197) #20	FGFR1OP2 (ENSCJPG00005014198) #22	TM7SF3 (ENSCJPG00005014199) #23	MED21 (ENSCJPG00005014200) #24	STK38L (ENSCJPG00005014203) #27	BMAL2 (ENSCJPG00005014204) #28	PPFIBP1 (ENSCJPG00005014207) #30	CYB5R3 (ENSCJPG00005015559)	A4GALT (ENSCJPG00005015560)	ENSCJPG00005015561	ENSCJPG00005015562	PACSIN2 (ENSCJPG00005015563)	TTLL1 (ENSCJPG00005015596)	ENSCJPG00005015597	MCAT (ENSCJPG00005015598)	TSPO (ENSCJPG00005015614)	TTLL12 (ENSCJPG00005015615)
Neognathae_b	ANCESTRAL SPECIES	2	ENSGT00940000156680.b.b	ENSGT00990000203615.a.a.b	ENSGT00940000153525	ENSGT00390000018612.a.b	ENSGT00390000012501	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182839.B.a.a	ENSGT00940000161014	ENSGT00390000007747 #18	ENSGT00940000156039 #19	ENSGT00390000002793 #20	ENSGT00390000018003.b #22	ENSGT00390000008702 #23	ENSGT00390000014557 #24	ENSGT00940000153544.b #27	ENSGT00940000160423 #28	ENSGT01050000244951.a.a #30	ENSGT00390000005178 #31	ENSGT00940000153962.b	ENSGT00530000063825.A.c	ENSGT00510000047981.c	ENSGT00940000158466	ENSGT00950000182973.a.c.b	ENSGT00940000156720	ENSGT01030000235072	ENSGT00390000013715	ENSGT00390000012980.a
Neognathae_c	ANCESTRAL SPECIES		ENSGT00940000156680.b.b	ENSGT00990000203615.a.a.b	ENSGT00940000153525	ENSGT00390000018612.a.b	ENSGT00390000012501	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182839.B.a.a	ENSGT00940000161014	ENSGT00390000007747 #18	ENSGT00940000156039 #19	ENSGT00390000002793 #20	ENSGT00390000018003.b #22	ENSGT00390000008702 #23	ENSGT00390000014557 #24	ENSGT00940000153544.b #27	ENSGT00940000160423 #28	ENSGT01050000244951.a.a #30	ENSGT00390000005178 #31	ENSGT00940000153962.b	ENSGT00530000063825.A.c	ENSGT00510000047981.c	ENSGT00940000158466	ENSGT00950000182973.a.c.b	ENSGT00940000156720	ENSGT01030000235072	ENSGT00390000013715	ENSGT00390000012980.a
Golden eagle	MODERN SPECIES	8	ENSACCG00020007731	ENSACCG00020007791	KCNJ8 (ENSACCG00020007883)	LDHB (ENSACCG00020007895)	GYS2 (ENSACCG00020007913)	SPX (ENSACCG00020007933)	IRAG2 (ENSACCG00020007953)	DNAI7 (ENSACCG00020007983)	ETFRF1 (ENSACCG00020008012)	KRAS (ENSACCG00020008023)	RASSF8 (ENSACCG00020008036)	BHLHE41 (ENSACCG00020008046)	SSPN (ENSACCG00020008052) #18	ITPR2 (ENSACCG00020014160) #19	INTS13 (ENSACCG00020016853) #20	FGFR1OP2 (ENSACCG00020016860) #22	PRMT8 (ENSACCG00020016863)	CRACR2A (ENSACCG00020016865)	PARP11 (ENSACCG00020016868)	TSPAN9 (ENSACCG00020016871)	TEAD4 (ENSACCG00020016876)	TULP3 (ENSACCG00020016877)	RHNO1 (ENSACCG00020016878)	FOXM1 (ENSACCG00020016881)	ENSACCG00020016883	ITFG2 (ENSACCG00020016885)	FKBP4 (ENSACCG00020016887)	ENSACCG00020016890	ENSACCG00020016892	ENSACCG00020016894	NECAP1 (ENSACCG00020016896)
Kakapo	MODERN SPECIES	20	ABCC9 (ENSSHBG00005015154)	KCNJ8 (ENSSHBG00005014701)	LDHB (ENSSHBG00005014687)	GYS2 (ENSSHBG00005014671)	SPX (ENSSHBG00005014662)	IRAG2 (ENSSHBG00005014648)	DNAI7 (ENSSHBG00005014618)	ETFRF1 (ENSSHBG00005014601)	KRAS (ENSSHBG00005014594)	ENSSHBG00005014584	RASSF8 (ENSSHBG00005014578)	BHLHE41 (ENSSHBG00005014564)	SSPN (ENSSHBG00005014543) #18	ITPR2 (ENSSHBG00005013963) #19	INTS13 (ENSSHBG00005013819) #20	FGFR1OP2 (ENSSHBG00005013801) #22	TM7SF3 (ENSSHBG00005013789) #23	MED21 (ENSSHBG00005013777) #24	STK38L (ENSSHBG00005013754) #27	BMAL2 (ENSSHBG00005013707) #28	ENSSHBG00005013692	PPFIBP1 (ENSSHBG00005013672) #30	CYB5R3 (ENSSHBG00005013634)	ENSSHBG00005013622	ENSSHBG00005013616	ENSSHBG00005013609	ARFGAP3 (ENSSHBG00005013602)	PACSIN2 (ENSSHBG00005013557)	TTLL1 (ENSSHBG00005013540)	ENSSHBG00005013522	MCAT (ENSSHBG00005013512)
Passeriformes	ANCESTRAL SPECIES	3	ENSGT00940000159401	ENSGT00960000189377	ENSGT00940000155319.h.c.b	ENSGT00960000188407	ENSGT00940000161161.b	ENSGT00940000158466	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00950000182839.B.a.a	ENSGT00940000161014	ENSGT00390000007747 #18	ENSGT00960000189646	ENSGT00940000156039 #19	ENSGT00390000002793 #20	ENSGT00390000018003.b #22	ENSGT00390000008702 #23	ENSGT00390000014557 #24	ENSGT00940000153544.b #27	ENSGT00940000160423 #28	ENSGT01050000244951.a.a #30	ENSGT00390000005178 #31	ENSGT00940000153962.b	ENSGT00530000063825.A.c	ENSGT00510000047981.c	ENSGT00530000063722.a	ENSGT00390000012501	ENSGT00390000018612.a.b	ENSGT00940000153525	ENSGT00990000203615.a.a.b	ENSGT00940000156680.b.b
Great tit	MODERN SPECIES	10	ENSPMJG00000009240	ENSPMJG00000009239	ENSPMJG00000009238	ARFGAP3 (ENSPMJG00000009234)	ENSPMJG00000009233	DNAI7 (ENSPMJG00000009232)	ETFRF1 (ENSPMJG00000009230)	KRAS (ENSPMJG00000009229)	RASSF8 (ENSPMJG00000009195)	BHLHE41 (ENSPMJG00000009191)	SSPN (ENSPMJG00000009189) #18	ENSPMJG00000009186	ENSPMJG00000009182	ITPR2 (ENSPMJG00000009161) #19	INTS13 (ENSPMJG00000009129) #20	FGFR1OP2 (ENSPMJG00000009128) #22	TM7SF3 (ENSPMJG00000009126) #23	MED21 (ENSPMJG00000009125) #24	STK38L (ENSPMJG00000009106) #27	BMAL2 (ENSPMJG00000009089) #28	REP15 (ENSPMJG00000009088) #31	PPFIBP1 (ENSPMJG00000009077) #30	CYB5R3 (ENSPMJG00000009034)	ENSPMJG00000009033	ENSPMJG00000009032	AGK (ENSPMJG00000009029)	DENND11 (ENSPMJG00000009027)	WEE2 (ENSPMJG00000009025)	SSBP1 (ENSPMJG00000009024)	CREB3L2 (ENSPMJG00000009020)	DGKI (ENSPMJG00000009012)
Passeriformes_d	ANCESTRAL SPECIES	3	ENSGT00960000189377.a	ENSGT00960000189377.b	ENSGT00940000155319.h.c.b	ENSGT00960000188407	ENSGT00940000161161.b	ENSGT00940000158466	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00950000182839.B.a.a	ENSGT00940000161014	ENSGT00390000007747 #18	ENSGT00960000189646	ENSGT00940000156039 #19	ENSGT00390000002793 #20	ENSGT00390000018003.b #22	ENSGT00390000008702 #23	ENSGT00390000014557 #24	ENSGT00940000153544.b #27	ENSGT00940000160423 #28	ENSGT01050000244951.a.a #30	ENSGT00390000005178 #31	ENSGT00940000153962.b	ENSGT00530000063825.A.c	ENSGT00510000047981.c	ENSGT00530000063722.a	ENSGT00390000012501	ENSGT00390000018612.a.b	ENSGT00940000153525	ENSGT00990000203615.a.a.b	ENSGT00940000156680.b.b
Passeriformes_g	ANCESTRAL SPECIES	4	ENSGT00960000189377.a	ENSGT00960000189377.b	ENSGT00940000155319.h.c.b	ENSGT00960000188407	ENSGT00940000161161.b	ENSGT00940000158466	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00950000182839.B.a.a	ENSGT00940000161014	ENSGT00390000007747 #18	ENSGT00960000189646	ENSGT00940000156039 #19	ENSGT00390000002793 #20	ENSGT00390000018003.b #22	ENSGT00390000008702 #23	ENSGT00390000014557 #24	ENSGT00940000153544.b #27	ENSGT00940000160423 #28	ENSGT01050000244951.a.a #30	ENSGT00390000005178 #31	ENSGT00940000153962.b	ENSGT00530000063825.A.c	ENSGT00510000047981.c	ENSGT00530000063722.a	ENSGT00390000012501	ENSGT00390000018612.a.b	ENSGT00940000153525	ENSGT00990000203615.a.a.b	ENSGT00940000156680.b.b
Passeroidea	ANCESTRAL SPECIES	3	ENSGT00940000159401	ENSGT00960000189377.a	ENSGT00960000189377.b	ENSGT00940000155319.h.c.b	ENSGT00940000161161.b	ENSGT00940000158466	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00950000182839.B.a.a	ENSGT00940000161014	ENSGT00390000007747 #18	ENSGT00960000189646	ENSGT00940000156039 #19	ENSGT00390000002793 #20	ENSGT00390000018003.b #22	ENSGT00390000008702 #23	ENSGT00390000014557 #24	ENSGT00940000153544.b #27	ENSGT00940000160423 #28	ENSGT01050000244951.a.a #30	ENSGT00390000005178 #31	ENSGT00940000153962.b	ENSGT00530000063825.A.c	ENSGT00510000047981.c	ENSGT00530000063722.a	ENSGT00390000012501	ENSGT00390000018612.a.b	ENSGT00940000153525	ENSGT00990000203615.a.a.b	ENSGT00940000156680.b.b
Zebra finch	MODERN SPECIES	11	ENSTGUG00000012248	ENSTGUG00000021234	ENSTGUG00000025430	ENSTGUG00000023292	ARFGAP3 (ENSTGUG00000012247)	DNAI7 (ENSTGUG00000012243)	KRAS (ENSTGUG00000012235)	ENSTGUG00000027429	RASSF8 (ENSTGUG00000012234)	BHLHE41 (ENSTGUG00000012230)	SSPN (ENSTGUG00000025597) #18	ENSTGUG00000023761	ITPR2 (ENSTGUG00000012196) #19	ENSTGUG00000012195	INTS13 (ENSTGUG00000012188) #20	FGFR1OP2 (ENSTGUG00000012184) #22	TM7SF3 (ENSTGUG00000012183) #23	MED21 (ENSTGUG00000024373) #24	STK38L (ENSTGUG00000012169) #27	BMAL2 (ENSTGUG00000012163) #28	REP15 (ENSTGUG00000012162) #31	ENSTGUG00000021374	PPFIBP1 (ENSTGUG00000012151) #30	CYB5R3 (ENSTGUG00000012143)	ENSTGUG00000012140	ENSTGUG00000020648	ENSTGUG00000026261	IRAG2 (ENSTGUG00000012124)	SPX (ENSTGUG00000012121)	GYS2 (ENSTGUG00000012106)	LDHB (ENSTGUG00000025396)
Common canary	MODERN SPECIES	26	C12orf4 (ENSSCAG00000009518)	RAD51AP1 (ENSSCAG00000009505)	ENSSCAG00000009496	ENSSCAG00000009486	ENSSCAG00000009484	ENSSCAG00000009483	ARFGAP3 (ENSSCAG00000009470)	ENSSCAG00000009466	ETFRF1 (ENSSCAG00000009461)	KRAS (ENSSCAG00000009455)	RASSF8 (ENSSCAG00000009415)	SSPN (ENSSCAG00000009410) #18	ENSSCAG00000009405	ITPR2 (ENSSCAG00000009371) #19	INTS13 (ENSSCAG00000009349) #20	FGFR1OP2 (ENSSCAG00000009342) #22	TM7SF3 (ENSSCAG00000009337) #23	MED21 (ENSSCAG00000009334) #24	STK38L (ENSSCAG00000009318) #27	BMAL2 (ENSSCAG00000009281) #28	PPFIBP1 (ENSSCAG00000009235) #30	REP15 (ENSSCAG00000009208) #31	CYB5R3 (ENSSCAG00000009199)	ENSSCAG00000009188	A4GALT (ENSSCAG00000009175)	IRAG2 (ENSSCAG00000009163)	SPX (ENSSCAG00000009153)	GYS2 (ENSSCAG00000008867)	LDHB (ENSSCAG00000008831)	KCNJ8 (ENSSCAG00000008826)	ABCC9 (ENSSCAG00000008765)
Medium ground finch	MODERN SPECIES	117	DYRK4 (ENSGFOG00000003048)	ENSGFOG00000003173	ENSGFOG00000003186	ENSGFOG00000003210	ENSGFOG00000003224	ARFGAP3 (ENSGFOG00000003249)	ENSGFOG00000003283	ETFRF1 (ENSGFOG00000003308)	KRAS (ENSGFOG00000003324)	ENSGFOG00000003342	RASSF8 (ENSGFOG00000003381)	SSPN (ENSGFOG00000003396) #18	ITPR2 (ENSGFOG00000004602) #19	ENSGFOG00000014762	INTS13 (ENSGFOG00000014765) #20	FGFR1OP2 (ENSGFOG00000014771) #22	TM7SF3 (ENSGFOG00000014772) #23	MED21 (ENSGFOG00000014773) #24	STK38L (ENSGFOG00000014774) #27	BMAL2 (ENSGFOG00000014776) #28
Flycatcher	MODERN SPECIES	10	ENSFALG00000027592	CCND2 (ENSFALG00000025684)	ENSFALG00000027101	ENSFALG00000026061	ENSFALG00000023011	ARFGAP3 (ENSFALG00000023723)	DNAI7 (ENSFALG00000025986)	ETFRF1 (ENSFALG00000003861)	KRAS (ENSFALG00000003867)	RASSF8 (ENSFALG00000003874)	ENSFALG00000028108	SSPN (ENSFALG00000026325) #18	ENSFALG00000026688	ITPR2 (ENSFALG00000003887) #19	INTS13 (ENSFALG00000003909) #20	FGFR1OP2 (ENSFALG00000028430) #22	TM7SF3 (ENSFALG00000003926) #23	MED21 (ENSFALG00000003930) #24	STK38L (ENSFALG00000003933) #27	BMAL2 (ENSFALG00000003942) #28	ENSFALG00000015072 #31	ENSFALG00000003955 #30	ENSFALG00000023994	ENSFALG00000003959	ENSFALG00000025784	ENSFALG00000003966	ENSFALG00000015090	ENSFALG00000025294	SPX (ENSFALG00000003552)	GYS2 (ENSFALG00000003557)	LDHB (ENSFALG00000024585)
African ostrich	MODERN SPECIES	759								NOL9 (ENSSCUG00000011327)	ZBTB48 (ENSSCUG00000011324)	KLHL21 (ENSSCUG00000011323)	PHF13 (ENSSCUG00000011321)	DNAJC11 (ENSSCUG00000011318)	ENSSCUG00000011316	ENSSCUG00000011313	INTS13 (ENSSCUG00000011306) #20	FGFR1OP2 (ENSSCUG00000011301) #22	TM7SF3 (ENSSCUG00000011298) #23	MED21 (ENSSCUG00000011297) #24	STK38L (ENSSCUG00000011291) #27	BMAL2 (ENSSCUG00000011279) #28	PPFIBP1 (ENSSCUG00000011251) #30	ENSSCUG00000011215	CYB5R3 (ENSSCUG00000011214)	ENSSCUG00000011212	A4GALT (ENSSCUG00000011210)	ARFGAP3 (ENSSCUG00000011207)	PACSIN2 (ENSSCUG00000011205)	TTLL1 (ENSSCUG00000011203)	ENSSCUG00000011201	MCAT (ENSSCUG00000011199)	TSPO (ENSSCUG00000011198)
Australian saltwater crocodile	MODERN SPECIES	49	ABCC9 (ENSCPRG00005011566)	KCNJ8 (ENSCPRG00005011543)	ENSCPRG00005011538	LDHB (ENSCPRG00005011537)	GYS2 (ENSCPRG00005011527)	SPX (ENSCPRG00005011505)	IRAG2 (ENSCPRG00005011495)	ETFRF1 (ENSCPRG00005011491)	DNAI7 (ENSCPRG00005011487)	KRAS (ENSCPRG00005011484)	ENSCPRG00005011471	RASSF8 (ENSCPRG00005011432)	SSPN (ENSCPRG00005011416) #18	ITPR2 (ENSCPRG00005005714) #19	INTS13 (ENSCPRG00005004880) #20	FGFR1OP2 (ENSCPRG00005004865) #22	TM7SF3 (ENSCPRG00005004854) #23	MED21 (ENSCPRG00005004841) #24	STK38L (ENSCPRG00005004814) #27	PPFIBP1 (ENSCPRG00005003349) #30	CYB5R3 (ENSCPRG00005003173)	A4GALT (ENSCPRG00005003168)	ARFGAP3 (ENSCPRG00005003154)	PACSIN2 (ENSCPRG00005003149)	TTLL1 (ENSCPRG00005003144)	ENSCPRG00005003115	MCAT (ENSCPRG00005003081)	TSPO (ENSCPRG00005003074)	TTLL12 (ENSCPRG00005003056)	ENSCPRG00005003040	SCUBE1 (ENSCPRG00005003018)
Cryptodira	ANCESTRAL SPECIES	10	ENSGT00990000203615.a.a.b	ENSGT00940000153525	ENSGT00540000073481	ENSGT00390000018612.a.b	ENSGT00390000012501	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00910000144343	ENSGT00950000182839.B.a.a	ENSGT00940000161014	ENSGT00390000007747 #18	ENSGT00940000156039 #19	ENSGT00390000002793 #20	ENSGT00390000018003.b #22	ENSGT00390000008702 #23	ENSGT00390000014557 #24	ENSGT00940000162660.a	ENSGT00940000153544.b #27	ENSGT00940000160423 #28	ENSGT01050000244951.a.a #30	ENSGT00390000005178 #31	ENSGT00940000153962.b	ENSGT00530000063825.A.c	ENSGT00510000047981.c	ENSGT00940000158466	ENSGT00950000182973.a.c.b	ENSGT00940000156720	ENSGT01030000235072	ENSGT00390000013715
Testudinoidea	ANCESTRAL SPECIES	4	ENSGT00940000156680.b.b	ENSGT00990000203615.a.a.b	ENSGT00940000153525	ENSGT00540000073481	ENSGT00390000018612.a.b	ENSGT00390000012501	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00950000182839.B.a.a	ENSGT00940000161014	ENSGT00390000007747 #18	ENSGT00940000156039 #19	ENSGT00390000002793 #20	ENSGT00390000018003.b #22	ENSGT00390000008702 #23	ENSGT00390000014557 #24	ENSGT00940000162660.a	ENSGT00940000153544.b #27	ENSGT00940000160423 #28	ENSGT01050000244951.a.a #30	ENSGT00390000005178 #31	ENSGT00940000153962.b	ENSGT00530000063825.A.c	ENSGT00510000047981.c	ENSGT00940000158466	ENSGT00950000182973.a.c.b	ENSGT00940000156720	ENSGT01030000235072	ENSGT00390000013715
Testudinidae	ANCESTRAL SPECIES	14	ENSGT00940000156680.b.b	ENSGT00990000203615.a.a.b	ENSGT00940000153525	ENSGT00540000073481	ENSGT00390000018612.a.b	ENSGT00390000012501	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00950000182839.B.a.a	ENSGT00940000161014	ENSGT00390000007747 #18	ENSGT00940000156039 #19	ENSGT00390000002793 #20	ENSGT00390000018003.b #22	ENSGT00390000008702 #23	ENSGT00390000014557 #24	ENSGT00940000162660.a	ENSGT00940000153544.b #27	ENSGT00940000160423 #28	ENSGT01050000244951.a.a #30	ENSGT00390000005178 #31	ENSGT00940000153962.b	ENSGT00530000063825.A.c	ENSGT00510000047981.c	ENSGT00940000158466	ENSGT00950000182973.a.c.b	ENSGT00940000156720	ENSGT01030000235072.b	ENSGT00390000013715
Abingdon island giant tortoise	MODERN SPECIES	2598											RASSF8 (ENSCABG00000019586)	BHLHE41 (ENSCABG00000019588)	SSPN (ENSCABG00000019593) #18	ITPR2 (ENSCABG00000019607) #19	INTS13 (ENSCABG00000019626) #20	FGFR1OP2 (ENSCABG00000019632) #22	TM7SF3 (ENSCABG00000019640) #23	MED21 (ENSCABG00000019646) #24	ENSCABG00000019648	ENSCABG00000019650	STK38L (ENSCABG00000019651) #27
Goode s thornscrub tortoise	MODERN SPECIES		ABCC9 (ENSGEVG00005003614)	KCNJ8 (ENSGEVG00005003588)	LDHB (ENSGEVG00005003582)	ENSGEVG00005003576	GYS2 (ENSGEVG00005003564)	SPX (ENSGEVG00005003557)	IRAG2 (ENSGEVG00005003531)	DNAI7 (ENSGEVG00005003509)	ETFRF1 (ENSGEVG00005003501)	KRAS (ENSGEVG00005003488)	RASSF8 (ENSGEVG00005003481)	BHLHE41 (ENSGEVG00005003472)	SSPN (ENSGEVG00005003444) #18	ITPR2 (ENSGEVG00005002806) #19	INTS13 (ENSGEVG00005002456) #20	FGFR1OP2 (ENSGEVG00005002446) #22	TM7SF3 (ENSGEVG00005002419) #23	MED21 (ENSGEVG00005002409) #24	ENSGEVG00005002399	STK38L (ENSGEVG00005002381) #27	BMAL2 (ENSGEVG00005002351) #28	PPFIBP1 (ENSGEVG00005002317) #30	REP15 (ENSGEVG00005002300) #31	CYB5R3 (ENSGEVG00005002279)	ENSGEVG00005002257	A4GALT (ENSGEVG00005002241)	ARFGAP3 (ENSGEVG00005002157)	PACSIN2 (ENSGEVG00005002129)	TTLL1 (ENSGEVG00005002106)	ENSGEVG00005002092	MCAT (ENSGEVG00005002033)
Emydidae	ANCESTRAL SPECIES	5	ENSGT00940000156680.b.b	ENSGT00990000203615.a.a.b	ENSGT00940000153525	ENSGT00540000073481	ENSGT00390000018612.a.b	ENSGT00390000012501	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00940000155871	ENSGT00950000182839.B.a.a	ENSGT00940000161014	ENSGT00390000007747 #18	ENSGT00940000156039 #19	ENSGT00390000002793 #20	ENSGT00390000018003.b #22	ENSGT00390000008702 #23	ENSGT00390000014557 #24	ENSGT00940000162660.a	ENSGT00940000153544.b #27	ENSGT00940000160423 #28	ENSGT01050000244951.a.a #30	ENSGT00390000005178 #31	ENSGT00940000153962.b	ENSGT00530000063825.A.c	ENSGT00510000047981.c	ENSGT00940000158466	ENSGT00950000182973.a.c.b	ENSGT00940000156720	ENSGT01030000235072	ENSGT00390000013715
painted turtle	MODERN SPECIES	15	ENSCPBG00000009269	GYS2 (ENSCPBG00000009271)	SPX (ENSCPBG00000009274)	IRAG2 (ENSCPBG00000009279)	DNAI7 (ENSCPBG00000009284)	ETFRF1 (ENSCPBG00000009287)	KRAS (ENSCPBG00000009289)	ENSCPBG00000009291	ENSCPBG00000009295	RASSF8 (ENSCPBG00000009305)	BHLHE41 (ENSCPBG00000009309)	SSPN (ENSCPBG00000009310) #18	ITPR2 (ENSCPBG00000009996) #19	ENSCPBG00000023088	INTS13 (ENSCPBG00000023095) #20	FGFR1OP2 (ENSCPBG00000023106) #22	TM7SF3 (ENSCPBG00000023111) #23	MED21 (ENSCPBG00000023117) #24	STK38L (ENSCPBG00000023125) #27	BMAL2 (ENSCPBG00000023135) #28	PPFIBP1 (ENSCPBG00000023210) #30	REP15 (ENSCPBG00000025166) #31	CYB5R3 (ENSCPBG00000025168)	ENSCPBG00000025169	A4GALT (ENSCPBG00000025172)	ENSCPBG00000025174	ARFGAP3 (ENSCPBG00000025177)	PACSIN2 (ENSCPBG00000025185)	ENSCPBG00000025187	ENSCPBG00000025195	ENSCPBG00000025197
Three-toed box turtle	MODERN SPECIES	49	KCNJ8 (ENSTMTG00000014419)	LDHB (ENSTMTG00000014427)	ENSTMTG00000014437	GYS2 (ENSTMTG00000014457)	SPX (ENSTMTG00000014479)	IRAG2 (ENSTMTG00000014503)	DNAI7 (ENSTMTG00000014548)	ETFRF1 (ENSTMTG00000014627)	KRAS (ENSTMTG00000014635)	RASSF8 (ENSTMTG00000014655)	ENSTMTG00000014670	SSPN (ENSTMTG00000014686) #18	ITPR2 (ENSTMTG00000015648) #19	INTS13 (ENSTMTG00000022606) #20	ENSTMTG00000022613	FGFR1OP2 (ENSTMTG00000022615) #22	TM7SF3 (ENSTMTG00000022618) #23	MED21 (ENSTMTG00000022622) #24	ENSTMTG00000022623	STK38L (ENSTMTG00000022628) #27	BMAL2 (ENSTMTG00000022632) #28	PPFIBP1 (ENSTMTG00000022636) #30	REP15 (ENSTMTG00000022647) #31	CYB5R3 (ENSTMTG00000022651)	A4GALT (ENSTMTG00000022655)	ARFGAP3 (ENSTMTG00000022658)	PACSIN2 (ENSTMTG00000022661)	TTLL1 (ENSTMTG00000022665)	ENSTMTG00000022668	MCAT (ENSTMTG00000022671)	TSPO (ENSTMTG00000022673)
Chinese turtle	MODERN SPECIES	1391	GYS2 (ENSPSIG00000009942)	SPX (ENSPSIG00000014186)	ENSPSIG00000014270	DNAI7 (ENSPSIG00000014365)	ETFRF1 (ENSPSIG00000015062)	KRAS (ENSPSIG00000015077)	ENSPSIG00000016355	RASSF8 (ENSPSIG00000016483)	BHLHE41 (ENSPSIG00000016504)	SSPN (ENSPSIG00000016959) #18	ENSPSIG00000017390	ENSPSIG00000017522 #19	ENSPSIG00000017639 #19	ENSPSIG00000017808	INTS13 (ENSPSIG00000017830) #20	FGFR1OP2 (ENSPSIG00000006855) #22	TM7SF3 (ENSPSIG00000007228) #23	MED21 (ENSPSIG00000008148) #24	ENSPSIG00000008183	STK38L (ENSPSIG00000008466) #27	BMAL2 (ENSPSIG00000009416) #28	PPFIBP1 (ENSPSIG00000010149) #30	REP15 (ENSPSIG00000001321) #31	CYB5R3 (ENSPSIG00000010316)	ENSPSIG00000001327	ENSPSIG00000010457	ENSPSIG00000011949	A4GALT (ENSPSIG00000001335)	ARFGAP3 (ENSPSIG00000011954)	PACSIN2 (ENSPSIG00000012828)	ENSPSIG00000013125
Lepidosauria	ANCESTRAL SPECIES	67	ENSGT00530000063808.b	ENSGT00390000014429.b	ENSGT00940000156776	ENSGT00390000003057	ENSGT00940000154045.a	ENSGT00390000003721.d.b	ENSGT00950000183125.a	ENSGT00530000064318	ENSGT00910000144343	ENSGT00950000182839.B.a.a	ENSGT00940000161014	ENSGT00390000007747 #18	ENSGT00940000156039 #19	ENSGT00940000167397.b	ENSGT00390000002793 #20	ENSGT00390000018003.b #22	ENSGT00390000008702 #23	ENSGT00390000014557 #24	ENSGT00940000162660.a	ENSGT00940000153544.b #27	ENSGT00940000160423 #28	ENSGT00940000169031 #26	ENSGT01050000244951.a.a #30	ENSGT00390000005178 #31	ENSGT00940000153962.b	ENSGT00530000063825.A.c
Episquamata	ANCESTRAL SPECIES	3	ENSGT00390000007134	ENSGT00530000063808.b	ENSGT00390000014429.b	ENSGT00940000156776	ENSGT00390000003057	ENSGT00940000154045.a	ENSGT00390000003721.d.b	ENSGT00950000183125.a	ENSGT00530000064318	ENSGT00910000144343	ENSGT00950000182839.B.a.a	ENSGT00940000161014	ENSGT00390000007747 #18	ENSGT00940000156039 #19	ENSGT00390000002793 #20	ENSGT00390000018003.b #22	ENSGT00390000008702 #23	ENSGT00390000014557 #24	ENSGT00940000162660.a	ENSGT00940000153544.b #27	ENSGT00940000160423 #28	ENSGT00940000169031 #26	ENSGT01050000244951.a.a #30	ENSGT00390000005178 #31	ENSGT00940000153962.b	ENSGT00940000155209	ENSGT00940000156019	ENSGT00940000163878	ENSGT00940000159379	ENSGT00940000153372.A.f	ENSGT00940000161422
Toxicofera	ANCESTRAL SPECIES	7	ENSGT00530000063808.b	ENSGT00390000014429.b	ENSGT00940000156776	ENSGT00390000003057	ENSGT00940000154045.a	ENSGT00390000003721.d.b	ENSGT00950000183125.a	ENSGT00530000064318	ENSGT00910000144343	ENSGT00950000182839.B.a.a	ENSGT00940000153118.eb.o.a	ENSGT00940000161014	ENSGT00390000007747 #18	ENSGT00940000156039 #19	ENSGT00390000002793 #20	ENSGT00390000018003.b #22	ENSGT00390000008702 #23	ENSGT00390000014557 #24	ENSGT00940000162660.a	ENSGT00940000153544.b #27	ENSGT00940000160423 #28	ENSGT00940000169031 #26	ENSGT01050000244951.a.a #30	ENSGT00390000005178 #31	ENSGT00940000153962.b	ENSGT00940000155209	ENSGT00940000156019	ENSGT00940000159379	ENSGT00940000153372.A.f	ENSGT00940000161422	ENSGT00940000153567.b.a.b
Elapidae	ANCESTRAL SPECIES	6	ENSGT00390000001775.B	ENSGT00390000007134	ENSGT00530000063808.b	ENSGT00390000014429.b	ENSGT00940000156776	ENSGT00390000003057	ENSGT00940000154045.a	ENSGT00390000003721.d.b	ENSGT00950000183125.a	ENSGT00530000064318.g	ENSGT00950000182839.B.a.a	ENSGT00940000161014	ENSGT00390000007747 #18	ENSGT00940000156039 #19	ENSGT00390000002793 #20	ENSGT00390000018003.b #22	ENSGT00390000008702 #23	ENSGT00390000014557 #24	ENSGT00940000162660.a	ENSGT00940000153544.b #27	ENSGT00940000160423 #28	ENSGT00940000169031 #26	ENSGT01050000244951.a.a #30	ENSGT00940000153962.b	ENSGT00940000155209.w	ENSGT00940000156019.g	ENSGT00940000159379	ENSGT00940000153372.A.f.o.b	ENSGT00940000153372.A.f.o.a	ENSGT00940000161422	ENSGT00940000153567.b.a.b
Elapidae_a	ANCESTRAL SPECIES	1	ENSGT00810000125439.B	ENSGT00390000013052	ENSGT00530000063868.b	ENSGT00940000158792	ENSGT00940000156776	ENSGT00390000003057	ENSGT00940000154045.a	ENSGT00390000003721.d.b	ENSGT00950000183125.a	ENSGT00530000064318.g	ENSGT00950000182839.B.a.a	ENSGT00940000161014	ENSGT00390000007747.i #18	ENSGT00940000156039 #19	ENSGT00390000002793 #20	ENSGT00390000018003.b #22	ENSGT00390000008702 #23	ENSGT00390000014557 #24	ENSGT00940000162660.a	ENSGT00940000153544.b #27	ENSGT00940000160423 #28	ENSGT01050000244951.a.a #30	ENSGT00940000153962.b	ENSGT00940000155209.w	ENSGT00940000156019.g	ENSGT00940000159379	ENSGT00940000153372.A.f.o.b	ENSGT00940000153372.A.f.o.a	ENSGT00940000161422	ENSGT00940000153567.b.a.b	ENSGT00940000155057
Acanthophiinae	ANCESTRAL SPECIES		ENSGT00390000013052	ENSGT00530000063868.b	ENSGT00940000158792	ENSGT00940000156776	ENSGT00390000003057	ENSGT00940000154045.a	ENSGT00390000003721.d.b	ENSGT00950000183125.a	ENSGT00530000064318.g	ENSGT00940000153118.eb.o.a	ENSGT00950000182839.B.a.a	ENSGT00940000161014	ENSGT00390000007747.i #18	ENSGT00940000156039 #19	ENSGT00390000002793 #20	ENSGT00390000018003.b #22	ENSGT00390000008702 #23	ENSGT00390000014557 #24	ENSGT00940000162660.a	ENSGT00940000153544.b #27	ENSGT00940000160423 #28	ENSGT01050000244951.a.a #30	ENSGT00940000153962.b	ENSGT00940000155209.w	ENSGT00940000156019.g	ENSGT00940000159379	ENSGT00940000153372.A.f.o.b	ENSGT00940000153372.A.f.o.a	ENSGT00940000161422	ENSGT00940000153567.b.a.b	ENSGT00940000155057
Mainland tiger snake	MODERN SPECIES	20	IRAK4 (ENSNSUG00000006981)	CAMK1D (ENSNSUG00000006982)	CDC123 (ENSNSUG00000006986)	NUDT5 (ENSNSUG00000007005)	ENSNSUG00000007006	SEC61A2 (ENSNSUG00000007009)	DHTKD1 (ENSNSUG00000007533)	ENSNSUG00000008081	ENSNSUG00000008082	ENSNSUG00000008083	RASSF8 (ENSNSUG00000008084)	ENSNSUG00000008085	ENSNSUG00000008086 #18	ITPR2 (ENSNSUG00000008088) #19	INTS13 (ENSNSUG00000012613) #20	FGFR1OP2 (ENSNSUG00000012678) #22	TM7SF3 (ENSNSUG00000012679) #23	MED21 (ENSNSUG00000012804) #24	ENSNSUG00000012805	STK38L (ENSNSUG00000012807) #27	BMAL2 (ENSNSUG00000013032) #28	CYB5R3 (ENSNSUG00000013035)	CACNA2D1 (ENSNSUG00000013074)	ENSNSUG00000013076
Eastern brown snake	MODERN SPECIES		NELL2 (ENSPTXG00000001276)	TMEM117 (ENSPTXG00000001295)	TWF1 (ENSPTXG00000001296)	IRAK4 (ENSPTXG00000001301)	CDC123 (ENSPTXG00000001304)	NUDT5 (ENSPTXG00000001307)	SEC61A2 (ENSPTXG00000001313)	DHTKD1 (ENSPTXG00000001318)	UPF2 (ENSPTXG00000001320)	ENSPTXG00000001330	RASSF8 (ENSPTXG00000001331)	BHLHE41 (ENSPTXG00000001334)	SSPN (ENSPTXG00000001336) #18	ITPR2 (ENSPTXG00000001483) #19	INTS13 (ENSPTXG00000003311) #20	FGFR1OP2 (ENSPTXG00000003315) #22	TM7SF3 (ENSPTXG00000003320) #23	MED21 (ENSPTXG00000003352) #24	ENSPTXG00000003354	STK38L (ENSPTXG00000003358) #27	BMAL2 (ENSPTXG00000003362) #28	PPFIBP1 (ENSPTXG00000003384) #30	CYB5R3 (ENSPTXG00000005034)	CACNA2D1 (ENSPTXG00000005051)	HGF (ENSPTXG00000007546)	SEMA3C (ENSPTXG00000007552)	ENSPTXG00000007556	ENSPTXG00000007567	ENSPTXG00000007568	GNAT3 (ENSPTXG00000007569)	GNAI1 (ENSPTXG00000007570)
Blue-lipped sea krait	MODERN SPECIES	107														ENSLLTG00000000182	INTS13 (ENSLLTG00000000212) #20	FGFR1OP2 (ENSLLTG00000000347) #22	TM7SF3 (ENSLLTG00000000365) #23
Indian cobra	MODERN SPECIES	10	OPTN (ENSNNAG00000012838)	CCDC3 (ENSNNAG00000012861)	CAMK1D (ENSNNAG00000012877)	CDC123 (ENSNNAG00000012909)	NUDT5 (ENSNNAG00000012942)	ENSNNAG00000012965	ENSNNAG00000012980	DHTKD1 (ENSNNAG00000013083)	UPF2 (ENSNNAG00000013165)	ENSNNAG00000013323	ENSNNAG00000013330	BHLHE41 (ENSNNAG00000013363)	SSPN (ENSNNAG00000013414) #18	ITPR2 (ENSNNAG00000013481) #19	INTS13 (ENSNNAG00000014593) #20	FGFR1OP2 (ENSNNAG00000014662) #22	TM7SF3 (ENSNNAG00000014680) #23	MED21 (ENSNNAG00000014770) #24	ENSNNAG00000014780	STK38L (ENSNNAG00000014806) #27	BMAL2 (ENSNNAG00000014829) #28	ENSNNAG00000014891 #26	PPFIBP1 (ENSNNAG00000014912) #30	CYB5R3 (ENSNNAG00000015118)	CACNA2D1 (ENSNNAG00000015141)	HGF (ENSNNAG00000015231)	SEMA3C (ENSNNAG00000015432)	ENSNNAG00000015483	ENSNNAG00000015687	GNAT3 (ENSNNAG00000015712)	GNAI1 (ENSNNAG00000015735)
Lizard	MODERN SPECIES	4	GRM3 (ENSACAG00000016442)	ELAPOR2 (ENSACAG00000016478)	OPTN (ENSACAG00000001364)	MCM10 (ENSACAG00000001208)	UCMA (ENSACAG00000001195)	PHYH (ENSACAG00000001099)	SEPHS1 (ENSACAG00000000959)	BEND7 (ENSACAG00000000900)	PRPF18 (ENSACAG00000000818)	ENSACAG00000036814	FRMD4A (ENSACAG00000000600)	ENSACAG00000044270	ENSACAG00000011674 #18	ITPR2 (ENSACAG00000011690) #19	INTS13 (ENSACAG00000012201) #20	FGFR1OP2 (ENSACAG00000012244) #22	TM7SF3 (ENSACAG00000012262) #23	MED21 (ENSACAG00000012314) #24	ENSACAG00000036873	ENSACAG00000036638	ENSACAG00000012318	ENSACAG00000012323	ENSACAG00000042067	STK38L (ENSACAG00000012343) #27	BMAL2 (ENSACAG00000012446) #28	PPFIBP1 (ENSACAG00000012507) #30	REP15 (ENSACAG00000012559) #31	CYB5R3 (ENSACAG00000038147)	ENSACAG00000039959	CACNA2D1 (ENSACAG00000012663)	HGF (ENSACAG00000013177)
Laterata	ANCESTRAL SPECIES	6	ENSGT00390000011492	ENSGT00390000007134	ENSGT00530000063808.b	ENSGT00390000014429.b	ENSGT00940000156776	ENSGT00390000003057	ENSGT00940000154045.a	ENSGT00390000003721.d.b	ENSGT00950000183125.a	ENSGT00530000064318	ENSGT00950000182839.B.a.a	ENSGT00940000161014	ENSGT00390000007747 #18	ENSGT00940000156039 #19	ENSGT00390000002793 #20	ENSGT00390000018003.b #22	ENSGT00390000008702 #23	ENSGT00390000014557 #24	ENSGT00940000153544.b #27	ENSGT00940000160423 #28	ENSGT01050000244951.a.a.t.b #30	ENSGT00390000005178 #31	ENSGT00940000153962.b	ENSGT00940000155209	ENSGT00940000156019	ENSGT00940000163878	ENSGT00940000159379	ENSGT00940000153372.A.f	ENSGT00940000161422	ENSGT00940000153567.b.a.b	ENSGT00940000155057
Argentine black and white tegu	MODERN SPECIES	33	MCM10 (ENSSMRG00000011915)	OPTN (ENSSMRG00000011916)	CCDC3 (ENSSMRG00000011920)	CAMK1D (ENSSMRG00000011958)	CDC123 (ENSSMRG00000011960)	NUDT5 (ENSSMRG00000011972)	SEC61A2 (ENSSMRG00000011978)	DHTKD1 (ENSSMRG00000012052)	UPF2 (ENSSMRG00000012056)	RASSF8 (ENSSMRG00000012140)	ENSSMRG00000012141	BHLHE41 (ENSSMRG00000012142)	SSPN (ENSSMRG00000012143) #18	ITPR2 (ENSSMRG00000012153) #19	INTS13 (ENSSMRG00000012157) #20	FGFR1OP2 (ENSSMRG00000012161) #22	TM7SF3 (ENSSMRG00000012162) #23	MED21 (ENSSMRG00000012165) #24	STK38L (ENSSMRG00000012167) #27	BMAL2 (ENSSMRG00000012171) #28	PPFIBP1 (ENSSMRG00000012209) #30	REP15 (ENSSMRG00000012218) #31	CYB5R3 (ENSSMRG00000012219)	ENSSMRG00000012220	CACNA2D1 (ENSSMRG00000012289)	HGF (ENSSMRG00000012323)	SEMA3C (ENSSMRG00000012361)	CD36 (ENSSMRG00000012365)	GNAT3 (ENSSMRG00000012367)	GNAI1 (ENSSMRG00000012371)	MAGI2 (ENSSMRG00000012386)
Common wall lizard	MODERN SPECIES	1	PHYH (ENSPMRG00000011461)	SEPHS1 (ENSPMRG00000011470)	BEND7 (ENSPMRG00000011477)	ENSPMRG00000011482	PRPF18 (ENSPMRG00000011486)	FRMD4A (ENSPMRG00000011508)	CDNF (ENSPMRG00000011566)	HSPA14 (ENSPMRG00000011576)	DCLRE1C (ENSPMRG00000011604)	MEIG1 (ENSPMRG00000011618)	ENSPMRG00000011625	DMTF1 (ENSPMRG00000011634)	ELAPOR2 (ENSPMRG00000011664)	GRM3 (ENSPMRG00000011689)	INTS13 (ENSPMRG00000011697) #20	FGFR1OP2 (ENSPMRG00000011709) #22	TM7SF3 (ENSPMRG00000011714) #23	MED21 (ENSPMRG00000011721) #24	STK38L (ENSPMRG00000011725) #27	ENSPMRG00000011736	ENSPMRG00000011746 #30	ENSPMRG00000011756	ENSPMRG00000011761 #30	CYB5R3 (ENSPMRG00000011773)	ENSPMRG00000011776	CACNA2D1 (ENSPMRG00000011795)	HGF (ENSPMRG00000011849)	ENSPMRG00000011862	ENSPMRG00000011864	SEMA3C (ENSPMRG00000011868)	CD36 (ENSPMRG00000011888)
tuatara	MODERN SPECIES	913								SSPN (ENSSPUG00000015511) #18	ENSSPUG00000015535 #19	ENSSPUG00000015584 #19	ENSSPUG00000015594	ENSSPUG00000015599	ENSSPUG00000015608 #19	ENSSPUG00000015615	INTS13 (ENSSPUG00000015622) #20	FGFR1OP2 (ENSSPUG00000015640) #22	TM7SF3 (ENSSPUG00000015652) #23	MED21 (ENSSPUG00000015658) #24	STK38L (ENSSPUG00000015664) #27	BMAL2 (ENSSPUG00000015684) #28	PPFIBP1 (ENSSPUG00000015727) #30	REP15 (ENSSPUG00000015779) #31	CYB5R3 (ENSSPUG00000015784)	ENSSPUG00000015809
Anura	ANCESTRAL SPECIES	84	ENSGT00940000163137	ENSGT01030000234535.D	ENSGT00390000000212	ENSGT00950000182939.b.a.b	ENSGT00940000156122	ENSGT00390000009532.A.d.a	ENSGT00530000063722.a	ENSGT00390000004708	ENSGT00390000001810	ENSGT00910000144343	ENSGT00950000182839.B.a.a	ENSGT00940000161014	ENSGT00390000007747 #18	ENSGT00940000156039 #19	ENSGT00390000002793 #20	ENSGT00390000018003.b #22	ENSGT00390000008702 #23
Frog	MODERN SPECIES	3	dnai7 (ENSXETG00000048107)	etfrf1 (ENSXETG00000046152)	krasl (ENSXETG00000043145)	ENSXETG00000038333	ENSXETG00000045065	nrip3 (ENSXETG00000041020)	ENSXETG00000046920	cecr5 (ENSXETG00000048547)	rab43 (ENSXETG00000049287)	ENSXETG00000046325	RASSF8 (ENSXETG00000037861)	bhlhe41 (ENSXETG00000045299)	SSPN (ENSXETG00000046931) #18	itpr2 (ENSXETG00000016448) #19	ints13 (ENSXETG00000047046) #20	fgfr1op2 (ENSXETG00000016502) #22	endoul (ENSXETG00000016505)	ppfibp1 (ENSXETG00000016522) ##30	cyb5r3 (ENSXETG00000016513)	rep15 (ENSXETG00000044538) #31	syt10 (ENSXETG00000048414)	XB5856770 [provisional] (ENSXETG00000031355)	pkp2 (ENSXETG00000042467)	arntl2 (ENSXETG00000046520) #28	stk38l (ENSXETG00000044165) #27	has1 (ENSXETG00000020515)	med21 (ENSXETG00000003233) #24	asb14 (ENSXETG00000003053)	kiaa0930 (ENSXETG00000045686)	smc1b (ENSXETG00000003064)	ribc2 (ENSXETG00000041766)
Leishan spiny toad	MODERN SPECIES	983															INTS13 (ENSLLEG00000011687) #20	FGFR1OP2 (ENSLLEG00000011918) #22	TM7SF3 (ENSLLEG00000012023) #23
Coelacanth	MODERN SPECIES	1187											si:ch211-245j22.3 (ENSLACG00000007673)	ENSLACG00000008628	BMAL2 (ENSLACG00000009646) #28	stk38l (ENSLACG00000010768) #27	MED21 (ENSLACG00000011828) #24	FGFR1OP2 (ENSLACG00000011948) #22	TM7SF3 (ENSLACG00000012234) #23	ENSLACG00000012806
Actinopterygii	ANCESTRAL SPECIES	44	ENSGT00390000010777	ENSGT00390000014084	ENSGT01030000234578.B.a	ENSGT00390000006747	ENSGT00950000183117.a.a	ENSGT00940000158254	ENSGT00940000155067.b.a	ENSGT00940000155067.a	ENSGT00940000155118	ENSGT00390000016813	ENSGT00940000155166.A	ENSGT00940000158600	ENSGT00940000159389	ENSGT00940000158037	ENSGT00940000158187	ENSGT00390000018003.b #22	ENSGT00390000008702 #23	ENSGT00390000014557 #24	ENSGT00940000153544.b #27	ENSGT00940000160423 #28	ENSGT00940000158677	ENSGT00940000166645	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b ##30	ENSGT00390000005178.a #31	ENSGT00940000153962.b	ENSGT00530000063825.A.c	ENSGT00950000183132.A	ENSGT01050000244879.b.a.b.a	ENSGT00390000014700.a	ENSGT00940000165765
Neopterygii	ANCESTRAL SPECIES	58	ENSGT00390000010777	ENSGT00390000014084	ENSGT01030000234578.B.a	ENSGT00390000006747	ENSGT00950000183117.a.a	ENSGT00940000158254	ENSGT00940000155067.b.a	ENSGT00940000155067.a	ENSGT00940000155118	ENSGT00390000016813	ENSGT00940000155166.A	ENSGT00940000158600	ENSGT00940000159389	ENSGT00940000158037	ENSGT00940000158187	ENSGT00390000018003.b #22	ENSGT00390000008702 #23	ENSGT00390000014557 #24	ENSGT00940000153544.b #27	ENSGT00940000160423 #28	ENSGT00940000158677	ENSGT00940000166645	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b ##30	ENSGT00390000005178.a #31	ENSGT00940000153962.b	ENSGT00530000063825.A.c.e	ENSGT00530000063825.A.c.f	ENSGT00950000183132.A	ENSGT01050000244879.b.a.b.a	ENSGT00390000014700.a
Osteoglossocephalai	ANCESTRAL SPECIES	226																ENSGT00390000018003.b #22	ENSGT00390000008702 #23	ENSGT00390000014557 #24	ENSGT00940000153544.b #27	ENSGT00940000160423 #28	ENSGT00940000158677	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b ##30	ENSGT00940000153962.b	ENSGT00530000063825.A.c.e	ENSGT00530000063825.A.c.f	ENSGT00950000183132.A	ENSGT01050000244879.b.a.b.a	ENSGT00390000014700.a	ENSGT00940000165765	ENSGT00390000013899.a.a
Osteoglossiformes	ANCESTRAL SPECIES																	ENSGT00390000018003.b #22
Asian bonytongue	MODERN SPECIES	20	AVPR1A (ENSSFOG00015025619)	rxylt1 (ENSSFOG00015003030)	SRGAP1 (ENSSFOG00015003082)	parp12a (ENSSFOG00015003427)	tbxas1 (ENSSFOG00015003485)	hipk2 (ENSSFOG00015003537)	ENSSFOG00015003591	mical3a (ENSSFOG00015003690)	ttc38 (ENSSFOG00015003861)	tspan33b (ENSSFOG00015003911)	tspan9b (ENSSFOG00015003925)	PRMT8 (ENSSFOG00015032480)	CRACR2A (ENSSFOG00015004037)	TMTC2 (ENSSFOG00015004053)	nr1h4 (ENSSFOG00015004131)	fgfr1op2 (ENSSFOG00015004186) #22	prkcq (ENSSFOG00015004223)	pfkfb3 (ENSSFOG00015004295)	ENSSFOG00015030181	ENSSFOG00015028143	ENSSFOG00015025232	ENSSFOG00015030178	ENSSFOG00015024922	rbm17 (ENSSFOG00015009892)	chchd3a (ENSSFOG00015009965)	copg2 (ENSSFOG00015010009)	dcn (ENSSFOG00015010107)	LUM (ENSSFOG00015010156)	EPYC (ENSSFOG00015010251)	HGF (ENSSFOG00015022587)	CACNA2D1 (ENSSFOG00015022561)
P. kingsleyae	MODERN SPECIES	399							ENSPKIG00000005565	pdlim1 (ENSPKIG00000005554)	ENSPKIG00000005538	ENSPKIG00000005306	ALDH18A1 (ENSPKIG00000005180)	ENSPKIG00000005129	MGMT (ENSPKIG00000005102)	rbm17 (ENSPKIG00000005048)	prkcq (ENSPKIG00000004934)	fgfr1op2 (ENSPKIG00000004879) #22	ENSPKIG00000004862
Clupeocephala	ANCESTRAL SPECIES	352									ENSGT00940000158600	ENSGT00950000183146.a.a	ENSGT00940000158917	ENSGT00940000155486	ENSGT00950000183205.b.a.b.a.b	ENSGT00390000016138	ENSGT00940000159389	ENSGT00390000018003.b #22	ENSGT00390000008702 #23	ENSGT00390000014557 #24	ENSGT00940000153544.b #27	ENSGT00940000160423.b #28	ENSGT00940000158677
Otomorpha	ANCESTRAL SPECIES	335									ENSGT00940000158600	ENSGT00950000183146.a.a	ENSGT00940000158917	ENSGT00940000155486	ENSGT00950000183205.b.a.b.a.b	ENSGT00390000016138	ENSGT00940000159389	ENSGT00390000018003.b #22	ENSGT00390000008702 #23	ENSGT00390000014557 #24	ENSGT00940000153544.b #27	ENSGT00940000160423.b #28	ENSGT00940000158677	ENSGT00940000155210.a.b	ENSGT00540000070023.d.k.a	ENSGT00940000165713	ENSGT00940000167467	ENSGT00390000017324	ENSGT00940000158969	ENSGT00390000002793 #20
Clupeiformes	ANCESTRAL SPECIES	211								ENSGT00390000016138	ENSGT00950000183205.b.a.b.a.b	ENSGT00940000155486	ENSGT00940000158917	ENSGT00950000183146.a.a	ENSGT00940000158600	ENSGT00390000004697	ENSGT00940000159389	ENSGT00390000018003.b #22	ENSGT00390000008702 #23	ENSGT00390000014557 #24	ENSGT00940000153544.b #27	ENSGT00940000160423.b #28	ENSGT00940000158677	ENSGT00950000182839.B.a.a.k	ENSGT00940000155210.a.b	ENSGT00540000070023.c.b	ENSGT00940000165713	ENSGT00940000167467	ENSGT00390000017324	ENSGT00940000158969	ENSGT00390000002793 #20	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b ##30
Atlantic herring	MODERN SPECIES	7	UBE2H (ENSCHAG00000017331)	zc3hc1 (ENSCHAG00000017303)	klhdc10 (ENSCHAG00000017062)	slc38a2 (ENSCHAG00000013945)	ENSCHAG00000013895	ENSCHAG00000013872	ENSCHAG00000013845	arid2 (ENSCHAG00000013809)	slc38a4 (ENSCHAG00000013550)	ENSCHAG00000013518	ANO4 (ENSCHAG00000012846)	ENSCHAG00000012800	ENSCHAG00000012780	ENSCHAG00000012755	gas2l3 (ENSCHAG00000012747)	fgfr1op2 (ENSCHAG00000012718) #22	ENSCHAG00000012655	TM7SF3 (ENSCHAG00000012355) #23	med21 (ENSCHAG00000012305) #24	stk38l (ENSCHAG00000011858) #27	BMAL2 (ENSCHAG00000011743) #28	pkp2 (ENSCHAG00000011682)	ENSCHAG00000011665	rassf8b (ENSCHAG00000011650)	nudt4b (ENSCHAG00000011637)	ENSCHAG00000011608	mrpl42 (ENSCHAG00000011586)	ENSCHAG00000011567	pwp1 (ENSCHAG00000010547)	ANO6 (ENSCHAG00000007784)	ints13 (ENSCHAG00000006399) #20
Denticle herring	MODERN SPECIES	6	TMTC1 (ENSDCDG00000032381)	ovch1 (ENSDCDG00000032340)	lmf2b (ENSDCDG00000032334)	ttll12 (ENSDCDG00000032313)	pnpla3 (ENSDCDG00000032299)	sult4a1 (ENSDCDG00000032298)	MPPED1 (ENSDCDG00000032297)	scube1 (ENSDCDG00000031849)	ALDH1L2 (ENSDCDG00000031759)	nopchap1 (ENSDCDG00000031742)	SLC41A2 (ENSDCDG00000031649)	chst11 (ENSDCDG00000031635)	ANO4 (ENSDCDG00000031407)	ENSDCDG00000031355	gas2l3 (ENSDCDG00000031352)	fgfr1op2 (ENSDCDG00000031347) #22	TM7SF3 (ENSDCDG00000031165) #23	med21 (ENSDCDG00000031154) #24	stk38l (ENSDCDG00000031147) #27	BMAL2 (ENSDCDG00000031141) #28	pkp2 (ENSDCDG00000031139)	ENSDCDG00000031138	rassf8b (ENSDCDG00000031136)	nudt4b (ENSDCDG00000031134)	UBE2N (ENSDCDG00000031133)	mrpl42 (ENSDCDG00000031132)	pwp1 (ENSDCDG00000031082)	slc38a4 (ENSDCDG00000030114)	slc38a2 (ENSDCDG00000028646)	ENSDCDG00000028573	arid2 (ENSDCDG00000028057)
Otophysi	ANCESTRAL SPECIES	119	ENSGT00390000006670	ENSGT00940000157926	ENSGT01030000235060	ENSGT00530000064318	ENSGT00940000154479.a.a.b	ENSGT00430000031071	ENSGT00940000158940.a	ENSGT00390000007640.a	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00940000158155	ENSGT00940000158917	ENSGT00940000155486	ENSGT00950000183205.b.a.b.a.b	ENSGT00390000016138	ENSGT00940000159389	ENSGT00390000018003.b #22	ENSGT00390000008702 #23	ENSGT00390000014557 #24	ENSGT00940000156608	ENSGT00940000155441	ENSGT00940000155210.a.b	ENSGT00540000070023.d.k.a	ENSGT00940000165713	ENSGT00390000017324	ENSGT00940000158969
Characiphysae	ANCESTRAL SPECIES	63	ENSGT00390000006670	ENSGT00940000157926	ENSGT01030000235060	ENSGT00530000064318	ENSGT00940000154479.a.a.b	ENSGT00430000031071	ENSGT00940000158940.a	ENSGT00390000007640.a	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00940000158155	ENSGT00940000158917	ENSGT00940000155486	ENSGT00950000183205.b.a.b.a.b	ENSGT00390000016138	ENSGT00940000159389	ENSGT00390000018003.b #22	ENSGT00390000008702 #23	ENSGT00390000014557 #24	ENSGT00940000156608	ENSGT00940000155441	ENSGT00940000155210.a.b	ENSGT00940000158677	ENSGT00940000153678.a.a	ENSGT00390000006485.c.sc	ENSGT00940000153438.b	ENSGT00950000182952.C.h	ENSGT00390000005378	ENSGT00950000182999.b.a.a	ENSGT00940000160124 #34	ENSGT00940000156000	ENSGT00390000014084
Channel catfish	MODERN SPECIES	5	fbxo7 (ENSIPUG00000015476)	echdc3 (ENSIPUG00000015491)	proser2 (ENSIPUG00000015501)	UPF2 (ENSIPUG00000015524)	fam180a (ENSIPUG00000015785)	mtpn (ENSIPUG00000015792)	chrm2a (ENSIPUG00000015809)	ptn (ENSIPUG00000015819)	ENSIPUG00000015825	TULP3 (ENSIPUG00000015848)	slc38a4 (ENSIPUG00000015906)	slc38a2 (ENSIPUG00000015924)	scaf11 (ENSIPUG00000015943)	ARID2 (ENSIPUG00000015959)	GAS2L3 (ENSIPUG00000016008)	fgfr1op2 (ENSIPUG00000016036) #22	tm7sf3 (ENSIPUG00000016064) #23	med21 (ENSIPUG00000016119) #24	pmpcb (ENSIPUG00000016136)	dnajc2 (ENSIPUG00000016177)	nudt4b (ENSIPUG00000016210)	pkp2 (ENSIPUG00000016227)	dennd5b (ENSIPUG00000016271)	FAM60A (ENSIPUG00000016490)	caprin2 (ENSIPUG00000016517)	btg1 (ENSIPUG00000016587)	ENSIPUG00000016632	cat (ENSIPUG00000016679)	itfg2 (ENSIPUG00000016788)	nrip2 (ENSIPUG00000016853)	klhl42 (ENSIPUG00000016864) #34
Characiphysae_b	ANCESTRAL SPECIES	31	ENSGT00940000157926	ENSGT01030000235060	ENSGT00530000064318	ENSGT00940000154479.a.a.b	ENSGT00430000031071	ENSGT00940000158940.a	ENSGT00390000007640.a	ENSGT01030000234583.a.a.c.a.b.b.a	ENSGT01030000234583.a.a.c.a.b.b.b	ENSGT00940000158155	ENSGT00940000158917	ENSGT00940000155486	ENSGT00950000183205.b.a.b.a.b	ENSGT00390000016138	ENSGT00940000159389	ENSGT00390000018003.b #22	ENSGT00390000008702 #23	ENSGT00390000014557 #24	ENSGT00940000156608	ENSGT00940000155441	ENSGT00940000155210.a.b	ENSGT00940000158677	ENSGT00940000153678.a.a	ENSGT00390000006485.c.sc	ENSGT00940000153438.b	ENSGT00950000182952.C.h	ENSGT00390000005378	ENSGT00950000182999.b.a.a	ENSGT00940000160124 #34	ENSGT00940000156000	ENSGT00390000014084
Characoidei	ANCESTRAL SPECIES	80								ENSGT01030000234583.a.a.c.a.b.b.a	ENSGT01030000234583.a.a.c.a.b.b.b	ENSGT00940000158155	ENSGT00940000158917	ENSGT00940000155486	ENSGT00950000183205.b.a.b.a.b	ENSGT00390000016138	ENSGT00940000159389	ENSGT00390000018003.b #22	ENSGT00390000008702 #23	ENSGT00390000014557 #24	ENSGT00940000156608	ENSGT00940000155441	ENSGT00940000155210.a.b	ENSGT00940000158677	ENSGT00940000153678.a.a	ENSGT00390000006485.c.sc	ENSGT00940000153438.b	ENSGT00950000182952.C.h	ENSGT00390000005378	ENSGT00950000182999.b.a.a	ENSGT00940000160124 #34	ENSGT00940000156000	ENSGT00390000014084
Red-bellied piranha	MODERN SPECIES	272																fgfr1op2 (ENSPNAG00000017156) #22	TM7SF3 (ENSPNAG00000017172) #23	med21 (ENSPNAG00000017182) #24	pmpcb (ENSPNAG00000017229)	dnajc2 (ENSPNAG00000017305)	nudt4b (ENSPNAG00000017347)	pkp2 (ENSPNAG00000017362)	dennd5b (ENSPNAG00000017640)	sinhcaf (ENSPNAG00000017661)	caprin2 (ENSPNAG00000017781)	btg1 (ENSPNAG00000004956)	itfg2 (ENSPNAG00000017847)	nrip2 (ENSPNAG00000017860)	klhl42 (ENSPNAG00000017881) #34	cwf19l1 (ENSPNAG00000017936)	washc3 (ENSPNAG00000017945)
Mexicana tetra	MODERN SPECIES	22	CACNA2D4 (ENSAMXG00000036880)	LRTM2 (ENSAMXG00000007693)	ENSAMXG00000030766	stk38l (ENSAMXG00000003684) #27	napepld (ENSAMXG00000003675)	rassf8b (ENSAMXG00000010389)	ENSAMXG00000030312	ints13 (ENSAMXG00000003664) #20	ndufa5 (ENSAMXG00000003659)	asb15b (ENSAMXG00000003652)	ENSAMXG00000043926	ENSAMXG00000039591	waslb (ENSAMXG00000041475)	gpr37b (ENSAMXG00000003640)	gas2l3 (ENSAMXG00000030075)	fgfr1op2 (ENSAMXG00000039243) #22	TM7SF3 (ENSAMXG00000042075) #23	med21 (ENSAMXG00000037449) #24	pmpcb (ENSAMXG00000007214)	dnajc2 (ENSAMXG00000007216)	nudt4b (ENSAMXG00000040513)	pkp2 (ENSAMXG00000007234)	dennd5b (ENSAMXG00000007247)	sinhcaf (ENSAMXG00000041503)	caprin2 (ENSAMXG00000007266)	btg1 (ENSAMXG00000042550)	itfg2 (ENSAMXG00000042592)	nrip2 (ENSAMXG00000035836)	klhl42 (ENSAMXG00000040776) #34	cwf19l1 (ENSAMXG00000007302)	washc3 (ENSAMXG00000007318)
Electric eel	MODERN SPECIES	161	H6PD (ENSEEEG00000021187)	epha2a (ENSEEEG00000021190)	rbm19 (ENSEEEG00000021194)	ENSEEEG00000021201	shmt2 (ENSEEEG00000021230)	NXPH4 (ENSEEEG00000021554)	R3HDM2 (ENSEEEG00000021560)	INHBC (ENSEEEG00000021577)	gli1 (ENSEEEG00000021580)	ARHGAP9 (ENSEEEG00000021582)	mars1 (ENSEEEG00000021584)	ddit3 (ENSEEEG00000021651)	ENSEEEG00000021652	FAM20B (ENSEEEG00000021656)	gas2l3 (ENSEEEG00000021663)	fgfr1op2 (ENSEEEG00000021667) #22	TM7SF3 (ENSEEEG00000021670) #23	med21 (ENSEEEG00000021673) #24	pmpcb (ENSEEEG00000021722)	dnajc2 (ENSEEEG00000022102)	nudt4b (ENSEEEG00000022103)	pkp2 (ENSEEEG00000022106)	dennd5b (ENSEEEG00000022108)
Cyprinoidei	ANCESTRAL SPECIES	62	ENSGT00940000156749	ENSGT00940000157926	ENSGT01030000235060	ENSGT00530000064318	ENSGT00940000154479.a.a.b	ENSGT00430000031071	ENSGT00940000158940.a	ENSGT00390000007640.a	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00940000158155	ENSGT00940000158917	ENSGT00940000155486	ENSGT00950000183205.b.a.b.a.b	ENSGT00390000016138.y	ENSGT00940000159389	ENSGT00390000018003.b #22	ENSGT00390000008702 #23	ENSGT00390000014557.fb #24	ENSGT00940000156608.bb	ENSGT00390000014557.gb #24	ENSGT00940000156608.cb	ENSGT00940000155441	ENSGT00940000155210.a.b	ENSGT00540000070023.d.k.a	ENSGT00940000165713	ENSGT00390000017324	ENSGT00940000158969	ENSGT01100000263571.i.a.a.a	ENSGT00390000006367.c	ENSGT00730000110905.b	ENSGT00940000155811
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	409	ENSGT00430000031071.c.b	ENSGT00940000158940.a.a	ENSGT00390000007640.a.h	ENSGT01030000234583.a.a.c.a.b.b.d	ENSGT00430000031071.d	ENSGT00940000158940.a.b	ENSGT00390000007640.a.g.a.a	ENSGT01030000234583.a.a.c.a.b.b.c.a.b	ENSGT01030000234583.a.a.c.a.b.b.c.a.a	ENSGT00940000158155	ENSGT00940000158917.d	ENSGT00940000155486.f	ENSGT00950000183205.b.a.b.a.b.e	ENSGT00390000016138.y.b	ENSGT00940000159389.h	ENSGT00390000018003.b.a #22	ENSGT00390000008702.g #23	ENSGT00390000014557.fb.a #24	ENSGT00940000156608.cb.b	ENSGT00940000156608.cb.a.a	ENSGT00940000155441.ab	ENSGT00940000155210.a.b.b	ENSGT00540000070023.d.l
Cyprininae_a	ANCESTRAL SPECIES	218	ENSGT00390000006670.g	ENSGT00940000157926	ENSGT01030000235060	ENSGT00530000064318	ENSGT00940000154479.a.a.b.h	ENSGT00430000031071.c.b	ENSGT00940000158940.a.a	ENSGT00390000007640.a.h	ENSGT01030000234583.a.a.c.a.b.b.d	ENSGT00940000158155.a	ENSGT00940000158917.c	ENSGT00940000155486.e.b	ENSGT00950000183205.b.a.b.a.b.f	ENSGT00390000016138.y.a	ENSGT00940000159389.g	ENSGT00390000018003.b.a #22	ENSGT00390000008702.h #23	ENSGT00390000014557.fb.b #24	ENSGT00940000156608.cb.a.b	ENSGT00940000155441.`b	ENSGT00390000017324.t	ENSGT00940000158969.c	ENSGT01100000263571.i.a.a.a.a.a.b.b	ENSGT00390000006367.c.l	ENSGT00730000110905.b.p	ENSGT00940000155811.s	ENSGT00940000157033.g.b	ENSGT00940000157371.mb.b	ENSGT00440000034107.b.b	ENSGT00390000010830.z	ENSGT00390000018775.b
Golden-line barbel	MODERN SPECIES	128											slc38a4 (ENSSGRG00000054660)	slc38a2 (ENSSGRG00000054668)	ENSSGRG00000054700	arid2 (ENSSGRG00000054711)	gas2l3 (ENSSGRG00000054755)	fgfr1op2 (ENSSGRG00000054757) #22	TM7SF3 (ENSSGRG00000054760) #23	med21 (ENSSGRG00000054772) #24	PMPCB (ENSSGRG00000054779)	dnajc2 (ENSSGRG00000054806)	mrpl42 (ENSSGRG00000054807)	ANO6 (ENSSGRG00000054809)	ENSSGRG00000054812	si:dkey-97m3.1 (ENSSGRG00000054813)	cpsf6 (ENSSGRG00000054820)	yeats4 (ENSSGRG00000054821)	frs2a (ENSSGRG00000054823)	kcnc2 (ENSSGRG00000054824)	ENSSGRG00000054826	cmah (ENSSGRG00000054828)	krr1 (ENSSGRG00000054834)
Goldfish	MODERN SPECIES	33	ECHDC3 (ENSCARG00000013177)	ENSCARG00000013186	UPF2 (ENSCARG00000013221)	ENSCARG00000013573	mtpn (ENSCARG00000013578)	chrm2a (ENSCARG00000013582)	ptn (ENSCARG00000013586)	ENSCARG00000013593	ENSCARG00000013601	TULP3 (ENSCARG00000013612)	slc38a4 (ENSCARG00000013654)	slc38a2 (ENSCARG00000014369)	ENSCARG00000014479	arid2 (ENSCARG00000014528)	gas2l3 (ENSCARG00000015605)	fgfr1op2 (ENSCARG00000015612) #22	TM7SF3 (ENSCARG00000015625) #23	med21 (ENSCARG00000015864) #24	pmpcb (ENSCARG00000015899)	dnajc2 (ENSCARG00000017038)	nudt4b (ENSCARG00000017128)	UBE2N (ENSCARG00000017146)	pwp1 (ENSCARG00000017185)	ANO6 (ENSCARG00000017324)	ENSCARG00000017669	si:dkey-97m3.1 (ENSCARG00000017699)	arid2 (ENSCARG00000017809)	ENSCARG00000017984	slc38a2 (ENSCARG00000018047)	ENSCARG00000018387	slc38a4 (ENSCARG00000018446)
Cyprininae	ANCESTRAL SPECIES	795											ENSGT00940000158917.c	ENSGT00940000155486.e	ENSGT00950000183205.b.a.b.a.b.f	ENSGT00390000016138.y.a	ENSGT00940000159389.g	ENSGT00390000018003.b.b #22	ENSGT00390000008702.h #23	ENSGT00390000014557.fb.b #24	ENSGT00940000156608.bb
Goldfish	DUPLICATION
Goldfish	MODERN SPECIES	21	plxna4 (ENSCARG00000005733)	nrf1 (ENSCARG00000006064)	ube2h (ENSCARG00000006138)	zc3hc1 (ENSCARG00000006178)	klhdc10 (ENSCARG00000006202)	smo (ENSCARG00000006387)	tspan33a (ENSCARG00000006737)	slc26a5 (ENSCARG00000006792)	psmc2 (ENSCARG00000006828)	prdm4 (ENSCARG00000006867)	akr1b1.2 (ENSCARG00000006920)	akr1b1.1 (ENSCARG00000006965)	shisal1a (ENSCARG00000007597)	arid2 (ENSCARG00000007634)	gas2l3 (ENSCARG00000007732)	fgfr1op2 (ENSCARG00000007760) #22	TM7SF3 (ENSCARG00000007779) #23	med21 (ENSCARG00000007874) #24	pmpcb (ENSCARG00000007920)	dnajc2 (ENSCARG00000008520)	nudt4b (ENSCARG00000008605)	ENSCARG00000008618	mrpl42 (ENSCARG00000008651)	ANO6 (ENSCARG00000008732)	ENSCARG00000009923	zdhhc17 (ENSCARG00000009966)	csrp2 (ENSCARG00000009996)	e2f7 (ENSCARG00000010011)	rergla (ENSCARG00000010032)	ENSCARG00000010044	mkrn1 (ENSCARG00000010065)
Goldfish	MODERN SPECIES	21	ENSCARG00000012698	sobpb (ENSCARG00000012686)	OSBPL8 (ENSCARG00000010045)	nap1l1 (ENSCARG00000009739)	phlda1 (ENSCARG00000009728)	krr1 (ENSCARG00000009535)	cmah (ENSCARG00000009453)	ENSCARG00000009427	kcnc2 (ENSCARG00000009407)	yeats4 (ENSCARG00000009373)	cpsf6 (ENSCARG00000009351)	si:dkey-97m3.1 (ENSCARG00000009329)	ENSCARG00000009319	ENSCARG00000009314	gas2l3 (ENSCARG00000009299)	fgfr1op2 (ENSCARG00000009294) #22	TM7SF3 (ENSCARG00000009250) #23	MED21 (ENSCARG00000009238) #24	pmpcb (ENSCARG00000008354)	dnajc2 (ENSCARG00000007950)	TMEM60 (ENSCARG00000007938)	ENSCARG00000007063	ENSCARG00000006986	RSBN1L (ENSCARG00000006972)	ENSCARG00000006958	tmem63a (ENSCARG00000006835)	rsph9 (ENSCARG00000006809)	mrps18a (ENSCARG00000006798)	vegfab (ENSCARG00000006785)	si:dkey-14d8.6 (ENSCARG00000006773)	mapk12b (ENSCARG00000006370)
Cyprininae_a	ANCESTRAL SPECIES	522											ENSGT00940000158917.d	ENSGT00940000155486.e.a	ENSGT00950000183205.b.a.b.a.b.e	ENSGT00390000016138.y.b	ENSGT00940000159389.h	ENSGT00390000018003.b.b #22	ENSGT00390000008702.g #23	ENSGT00390000014557.fb.a #24	ENSGT00940000156608.cb.b	ENSGT00940000156608.cb.a.a	ENSGT00940000155441.ab	ENSGT00940000155210.a.b.b	ENSGT00540000070023.d.l
Common carp reference	DUPLICATION
Common carp reference	MODERN SPECIES	8	ENSCCRG00000073065	ENSCCRG00000076368	ENSCCRG00000014266	ENSCCRG00000013067	mtpn (ENSCCRG00000070281)	chrm2a (ENSCCRG00000079628)	ptn (ENSCCRG00000061849)	ENSCCRG00000059442	ENSCCRG00000049663	ENSCCRG00000073804	slc38a4 (ENSCCRG00000014057)	slc38a2 (ENSCCRG00000057192)	ENSCCRG00000046715	arid2 (ENSCCRG00000041045)	gas2l3 (ENSCCRG00000041032)	fgfr1op2 (ENSCCRG00000076652) #22	ENSCCRG00000040047 #23	pmpcb (ENSCCRG00000077712)	dnajc2 (ENSCCRG00000053543)	nudt4b (ENSCCRG00000002580)	ENSCCRG00000056223	mrpl42 (ENSCCRG00000003146)	pwp1 (ENSCCRG00000003190)	ENSCCRG00000005991	ENSCCRG00000008409	si:dkey-97m3.1 (ENSCCRG00000005286)	cpsf6 (ENSCCRG00000055889)	yeats4 (ENSCCRG00000074729)	frs2a (ENSCCRG00000013888)	kcnc2 (ENSCCRG00000043410)	ENSCCRG00000064073
Common carp reference	MODERN SPECIES	36	ENSCCRG00000023542	ENSCCRG00000068503	ENSCCRG00000064327	ENSCCRG00000057668	mtpn (ENSCCRG00000053526)	ENSCCRG00000043781	chrm2a (ENSCCRG00000060046)	ptn (ENSCCRG00000054561)	ENSCCRG00000065942	ENSCCRG00000014132	slc38a4 (ENSCCRG00000003361)	slc38a2 (ENSCCRG00000046753)	ENSCCRG00000022024	arid2 (ENSCCRG00000046811)	gas2l3 (ENSCCRG00000081074)	fgfr1op2 (ENSCCRG00000037959) #22	med21 (ENSCCRG00000040014) #24	ENSCCRG00000037980 #23	pmpcb (ENSCCRG00000002987)	dnajc2 (ENSCCRG00000003070)	nudt4b (ENSCCRG00000041003)	ENSCCRG00000040904	ENSCCRG00000040892	ENSCCRG00000039643	ENSCCRG00000076895	ENSCCRG00000077545	ENSCCRG00000079720	ENSCCRG00000043792	ENSCCRG00000043796	si:dkey-97m3.1 (ENSCCRG00000000430)	ENSCCRG00000000395
Golden-line barbel	MODERN SPECIES	547											slc38a4 (ENSSGRG00000005357)	slc38a2 (ENSSGRG00000004139)	ENSSGRG00000004088	arid2 (ENSSGRG00000002360)	gas2l3 (ENSSGRG00000002327)	fgfr1op2 (ENSSGRG00000002326) #22	TM7SF3 (ENSSGRG00000002324) #23	med21 (ENSSGRG00000002314) #24	pmpcb (ENSSGRG00000002210)	ENSSGRG00000002208	dnajc2 (ENSSGRG00000001321)	nudt4b (ENSSGRG00000051175)	ENSSGRG00000051174	pwp1 (ENSSGRG00000051173)	ANO6 (ENSSGRG00000051171)	ENSSGRG00000051166	si:dkey-97m3.1 (ENSSGRG00000051132)	cpsf6 (ENSSGRG00000051109)	yeats4 (ENSSGRG00000051091)	frs2a (ENSSGRG00000051090)	kcnc2 (ENSSGRG00000051088)
Zebrafish	MODERN SPECIES	19	rpap3 (ENSDARG00000087962)	naga (ENSDARG00000099313)	ENSDARG00000103102	mtpn (ENSDARG00000104018)	ENSDARG00000102157	chrm2a (ENSDARG00000098612)	ptn (ENSDARG00000102340)	ENSDARG00000111388	ENSDARG00000025601	ENSDARG00000063672	slc38a4 (ENSDARG00000018149)	slc38a2 (ENSDARG00000045886)	ENSDARG00000045885	arid2 (ENSDARG00000007413)	gas2l3 (ENSDARG00000045880)	fgfr1op2 (ENSDARG00000009657) #22	TM7SF3 (ENSDARG00000093658) #23	med21 (ENSDARG00000026839) #24	pmpcb (ENSDARG00000016979)	dnajc2 (ENSDARG00000070477)	nudt4b (ENSDARG00000045878)	ube2nb (ENSDARG00000045877)	mrpl42 (ENSDARG00000079391)	pwp1 (ENSDARG00000015921)	ANO6 (ENSDARG00000061544)	ENSDARG00000020812	FAR2 (ENSDARG00000009262)	cpsf6 (ENSDARG00000018618)	yeats4 (ENSDARG00000045874)	kcnc2 (ENSDARG00000057468)	frs2a (ENSDARG00000045873)
Euteleosteomorpha	ANCESTRAL SPECIES	392																ENSGT00390000018003.b #22	ENSGT00390000008702 #23	ENSGT00390000014557 #24	ENSGT00940000153544.b #27	ENSGT00940000160423.b #28
Acanthomorphata	ANCESTRAL SPECIES	254													ENSGT00940000160423.b #28	ENSGT00940000153544.b #27	ENSGT00390000014557 #24	ENSGT00390000018003.b #22	ENSGT00390000008702 #23	ENSGT00940000159389	ENSGT00390000016138	ENSGT00950000183205.b.a.b.a.b	ENSGT01010000230272	ENSGT00940000155486	ENSGT00940000158917	ENSGT00950000183146.a.a	ENSGT00940000158600
Euacanthomorphacea	ANCESTRAL SPECIES	18	ENSGT00390000011669	ENSGT00790000123099	ENSGT00950000182835.d.b	ENSGT00390000007725.A.a	ENSGT00940000179100	ENSGT00940000155840.B	ENSGT00940000156858	ENSGT00390000011239.j	ENSGT00940000155529.B	ENSGT00390000004094	ENSGT01030000234550.a.a.d.a.b	ENSGT00940000166253	ENSGT00940000160423.b #28	ENSGT00940000153544.b #27	ENSGT00390000014557 #24	ENSGT00390000018003.b #22	ENSGT00390000008702 #23	ENSGT00940000159389	ENSGT00390000016138	ENSGT00950000183205.b.a.b.a.b	ENSGT00940000155486	ENSGT00940000158917	ENSGT00950000183146.a.a	ENSGT00940000158600	ENSGT01100000263519.A.b.b.a.a.c	ENSGT00530000063540.b	ENSGT00940000153744.B	ENSGT00390000009992	ENSGT01100000263519.D	ENSGT01060000248677	ENSGT00940000158014
Percomorphaceae	ANCESTRAL SPECIES	19	ENSGT01030000234868	ENSGT00790000123099	ENSGT00950000182835.d.b	ENSGT00390000007725.A.a	ENSGT00940000179100	ENSGT00940000155840.B	ENSGT00940000156858	ENSGT00390000011239.j	ENSGT00940000155529.B	ENSGT00390000004094	ENSGT01030000234550.a.a.d.a.b	ENSGT00940000166253	ENSGT00940000160423.b #28	ENSGT00940000153544.b #27	ENSGT00390000014557 #24	ENSGT00390000018003.b #22	ENSGT00390000008702 #23	ENSGT00940000159389	ENSGT00390000016138	ENSGT00950000183205.b.a.b.a.b	ENSGT00940000155486	ENSGT00940000158917	ENSGT00950000183146.a.a	ENSGT00940000158600	ENSGT01100000263519.A.b.b.a.a.c	ENSGT00530000063540.b	ENSGT00940000153744.B	ENSGT00390000009992	ENSGT01100000263519.D	ENSGT01060000248677	ENSGT00940000158014
Percomorphaceae_B	ANCESTRAL SPECIES	21	ENSGT01030000234868	ENSGT00790000123099	ENSGT00950000182835.d.b	ENSGT00390000007725.A.a	ENSGT00940000179100	ENSGT00940000155840.B	ENSGT00940000156858	ENSGT00390000011239.j	ENSGT00940000155529.B	ENSGT00390000004094	ENSGT01030000234550.a.a.d.a.b	ENSGT00940000166253	ENSGT00940000160423.b #28	ENSGT00940000153544.b #27	ENSGT00390000014557 #24	ENSGT00390000018003.b #22	ENSGT00390000008702 #23	ENSGT00940000159389	ENSGT00390000016138	ENSGT00950000183205.b.a.b.a.b	ENSGT00940000155486	ENSGT00940000158917	ENSGT00950000183146.a.a	ENSGT00940000158600	ENSGT00950000182866.D.d.a.c.b.a.a	ENSGT00940000164836	ENSGT01070000253760.b.b.a.a.c.b	ENSGT00940000178511	ENSGT00390000005508.a.b	ENSGT01100000263533.b.b.b.a.b.a.b	ENSGT00940000153582.a.n
Ovalentaria	ANCESTRAL SPECIES	22	ENSGT00390000011669	ENSGT01030000234868	ENSGT00790000123099	ENSGT00950000182835.d.b	ENSGT00390000007725.A.a	ENSGT00940000155840.B	ENSGT00940000156858	ENSGT00390000011239.j	ENSGT00940000155529.B	ENSGT00390000004094	ENSGT01030000234550.a.a.d.a.b	ENSGT00940000166253	ENSGT00940000160423.b #28	ENSGT00940000153544.b #27	ENSGT00390000014557 #24	ENSGT00390000018003.b #22	ENSGT00390000008702 #23	ENSGT00940000159389	ENSGT00390000016138	ENSGT00950000183205.b.a.b.a.b	ENSGT00940000155486	ENSGT00940000158917	ENSGT00950000183146.a.a	ENSGT00940000158600	ENSGT00950000182866.D.d.a.c.b.a.a	ENSGT00940000164836	ENSGT01070000253760.b.b.a.a.c.b	ENSGT00940000178511	ENSGT00390000005508.a.b	ENSGT01100000263533.b.b.b.a.b.a.b	ENSGT00530000063540.b
Ovalentaria_B	ANCESTRAL SPECIES	29	ENSGT00390000011669	ENSGT01030000234868	ENSGT00790000123099	ENSGT00950000182835.d.b	ENSGT00390000007725.A.a	ENSGT00940000155840.B	ENSGT00940000156858	ENSGT00390000011239.j	ENSGT00940000155529.B	ENSGT00390000004094	ENSGT01030000234550.a.a.d.a.b	ENSGT00940000166253	ENSGT00940000160423.b #28	ENSGT00940000153544.b #27	ENSGT00390000014557 #24	ENSGT00390000018003.b #22	ENSGT00390000008702 #23	ENSGT00940000159389	ENSGT00390000016138	ENSGT00950000183205.b.a.b.a.b	ENSGT00940000155486	ENSGT00940000158917	ENSGT00950000183146.a.a	ENSGT00940000158600	ENSGT00950000182866.D.d.a.c.b.a.a	ENSGT00940000164836	ENSGT01070000253760.b.b.a.a.c.b	ENSGT00940000178511	ENSGT00390000005508.a.b	ENSGT01100000263533.b.b.b.a.b.a.b	ENSGT00530000063540.b
Pomacentridae	ANCESTRAL SPECIES	65	ENSGT00390000011669	ENSGT01030000234868	ENSGT00790000123099	ENSGT00950000182835.d.b	ENSGT00390000007725.A.a	ENSGT00940000155840.B	ENSGT00940000156858	ENSGT00390000011239.j	ENSGT00940000155529.B	ENSGT00390000004094	ENSGT01030000234550.a.a.d.a.b	ENSGT00940000166253	ENSGT00940000160423.b #28	ENSGT00940000153544.b #27	ENSGT00390000014557 #24	ENSGT00390000018003.b #22	ENSGT00390000008702 #23	ENSGT00940000159389	ENSGT00390000016138	ENSGT00950000183205.b.a.b.a.b	ENSGT00940000155486	ENSGT00940000158917.f	ENSGT00950000183146.a.a	ENSGT00940000158600	ENSGT00950000182866.D.d.a.c.b.a.a	ENSGT00940000164836	ENSGT01070000253760.b.b.a.a.c.b	ENSGT00940000178511	ENSGT00390000005508.a.b	ENSGT01100000263533.b.b.b.a.b.a.b	ENSGT00530000063540.b
Pomacentridae_A	ANCESTRAL SPECIES	64	ENSGT00390000011669	ENSGT01030000234868	ENSGT00790000123099	ENSGT00950000182835.d.b	ENSGT00390000007725.A.a	ENSGT00940000155840.B	ENSGT00940000156858	ENSGT00390000011239.j	ENSGT00940000155529.B	ENSGT00390000004094	ENSGT01030000234550.a.a.d.a.b	ENSGT00940000166253	ENSGT00940000160423.b #28	ENSGT00940000153544.b #27	ENSGT00390000014557 #24	ENSGT00390000018003.b #22	ENSGT00390000008702 #23	ENSGT00940000159389	ENSGT00390000016138	ENSGT00950000183205.b.a.b.a.b	ENSGT00940000155486	ENSGT00940000158917.f	ENSGT00950000183146.a.a	ENSGT00940000158600	ENSGT00950000182866.D.d.a.c.b.a.a.c	ENSGT00940000164836	ENSGT01070000253760.b.b.a.a.c.b	ENSGT00940000178511	ENSGT00390000005508.a.b	ENSGT01100000263533.b.b.b.a.b.a.b	ENSGT00530000063540.b
Amphiprion	ANCESTRAL SPECIES	63	ENSGT00390000011669	ENSGT01030000234868	ENSGT00790000123099	ENSGT00950000182835.d.b	ENSGT00390000007725.A.a	ENSGT00940000155840.B	ENSGT00940000156858	ENSGT00390000011239.j	ENSGT00940000155529.B	ENSGT00390000004094	ENSGT01030000234550.a.a.d.a.b	ENSGT00940000166253	ENSGT00940000160423.b #28	ENSGT00940000153544.b #27	ENSGT00390000014557 #24	ENSGT00390000018003.b #22	ENSGT00390000008702 #23	ENSGT00940000159389	ENSGT00390000016138	ENSGT00950000183205.b.a.b.a.b	ENSGT00940000155486	ENSGT00940000158917.f	ENSGT00950000183146.a.a	ENSGT00940000158600	ENSGT00950000182866.D.d.a.c.b.a.a.c.a.a.a.a	ENSGT00950000182866.D.d.a.c.b.a.a.c.b	ENSGT00940000164836.p	ENSGT00950000182866.D.d.a.c.b.a.a.c.a.a.b	ENSGT00940000164836.o	ENSGT01070000253760.b.b.a.a.c.b	ENSGT01100000263533.b.b.b.a.b.a.b
Clown anemonefish	MODERN SPECIES	1735						ENSAOCG00000019825	ENSAOCG00000001448	pik3cg (ENSAOCG00000002034)	HBP1 (ENSAOCG00000001429)	ENSAOCG00000019646	coa6 (ENSAOCG00000019622)	slc13a4 (ENSAOCG00000019580)	zgc:162331 (ENSAOCG00000019534)	BMAL2 (ENSAOCG00000019488) #28	stk38l (ENSAOCG00000019403) #27	fgfr1op2 (ENSAOCG00000019332) #22	med21 (ENSAOCG00000001391) #24	TM7SF3 (ENSAOCG00000001384) #23
Orange clownfish	MODERN SPECIES	13	ENSAPEG00000022708	ntf3 (ENSAPEG00000022692)	ano2b (ENSAPEG00000022673)	ENSAPEG00000022656	pik3cg (ENSAPEG00000022612)	HBP1 (ENSAPEG00000022589)	ENSAPEG00000022572	ENSAPEG00000022554	ENSAPEG00000022435	coa6 (ENSAPEG00000022355)	slc13a4 (ENSAPEG00000022271)	zgc:162331 (ENSAPEG00000022255)	BMAL2 (ENSAPEG00000022204) #28	stk38l (ENSAPEG00000022175) #27	med21 (ENSAPEG00000022165) #24	fgfr1op2 (ENSAPEG00000022152) #22	TM7SF3 (ENSAPEG00000022137) #23	ENSAPEG00000022114	gas2l3 (ENSAPEG00000022059)	arid2 (ENSAPEG00000021970)	ENSAPEG00000021938	slc38a2 (ENSAPEG00000021879)	slc38a4 (ENSAPEG00000021848)	ENSAPEG00000021839	ENSAPEG00000021805	ANO4 (ENSAPEG00000021738)	ENSAPEG00000021715	NXPE3 (ENSAPEG00000021701)	ENSAPEG00000021673	ENSAPEG00000021639	NXPE3 (ENSAPEG00000021624)
Spiny chromis	MODERN SPECIES	1376													BMAL2 (ENSAPOG00000006715) #28	stk38l (ENSAPOG00000001084) #27	med21 (ENSAPOG00000006813) #24	fgfr1op2 (ENSAPOG00000006839) #22	TM7SF3 (ENSAPOG00000006849) #23	ENSAPOG00000006899	gas2l3 (ENSAPOG00000006912)
Bicolor damselfish	MODERN SPECIES	582												zgc:162331 (ENSSPAG00000007088)	BMAL2 (ENSSPAG00000007058) #28	stk38l (ENSSPAG00000007023) #27	med21 (ENSSPAG00000007009) #24	fgfr1op2 (ENSSPAG00000006983) #22	TM7SF3 (ENSSPAG00000006937) #23	gas2l3 (ENSSPAG00000006910)	arid2 (ENSSPAG00000006874)	ENSSPAG00000006835	slc38a2 (ENSSPAG00000006802)	slc38a4 (ENSSPAG00000006746)	ENSSPAG00000006724	ANO4 (ENSSPAG00000006679)
Cichlidae	ANCESTRAL SPECIES	61	ENSGT00390000011669	ENSGT01030000234868	ENSGT00790000123099	ENSGT00950000182835.d.b	ENSGT00390000007725.A.a	ENSGT00940000155840.B	ENSGT00940000156858	ENSGT00390000011239.j	ENSGT00940000155529.B	ENSGT00390000004094	ENSGT01030000234550.a.a.d.a.b	ENSGT00940000166253	ENSGT00940000160423.b #28	ENSGT00940000153544.b #27	ENSGT00390000014557 #24	ENSGT00390000018003.b #22	ENSGT00390000008702 #23	ENSGT00940000159389	ENSGT00390000016138	ENSGT00950000183205.b.a.b.a.b	ENSGT00940000155486	ENSGT00940000158917	ENSGT00950000183146.a.a	ENSGT00940000158600	ENSGT00950000182866.D.d.a.c.b.a.a.b.a
Pseudocrenilabrinae	ANCESTRAL SPECIES	23	ENSGT00390000011669	ENSGT01030000234868	ENSGT00790000123099	ENSGT00950000182835.d.b	ENSGT00390000007725.A.a	ENSGT00940000155840.B	ENSGT00940000156858	ENSGT00390000011239.j	ENSGT00940000155529.B	ENSGT00390000004094	ENSGT01030000234550.a.a.d.a.b	ENSGT00940000166253	ENSGT00940000160423.b #28	ENSGT00940000153544.b #27	ENSGT00390000014557 #24	ENSGT00390000018003.b #22	ENSGT00390000008702 #23	ENSGT00940000159389	ENSGT00390000016138	ENSGT00950000183205.b.a.b.a.b	ENSGT00940000155486	ENSGT00940000158917	ENSGT00950000183146.a.a	ENSGT00940000158600	ENSGT00950000182866.D.d.a.c.b.a.a.b.a	ENSGT00940000163701.b.a.a.a.b.d	ENSGT00390000007658	ENSGT00530000063790.a.a	ENSGT00730000111209	ENSGT00940000158755	ENSGT00940000154568
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	10	ENSGT00390000011669	ENSGT01030000234868	ENSGT00790000123099	ENSGT00950000182835.d.b	ENSGT00390000007725.A.a	ENSGT00940000155840.B	ENSGT00940000156858	ENSGT00390000011239.j	ENSGT00940000155529.B	ENSGT00390000004094	ENSGT01030000234550.a.a.d.a.b	ENSGT00940000166253	ENSGT00940000160423.b #28	ENSGT00940000153544.b #27	ENSGT00390000014557 #24	ENSGT00390000018003.b #22	ENSGT00390000008702 #23	ENSGT00940000159389	ENSGT00390000016138	ENSGT00950000183205.b.a.b.a.b	ENSGT00940000155486	ENSGT00940000158917	ENSGT00950000183146.a.a	ENSGT00940000158600	ENSGT00950000182866.D.d.a.c.b.a.a.b.a	ENSGT00940000177278.b	ENSGT00940000163701.b.a.a.a.b.d	ENSGT00390000007658	ENSGT00530000063790.a.a	ENSGT00730000111209	ENSGT00940000158755
Haplochromini	ANCESTRAL SPECIES	9	ENSGT00390000011669	ENSGT01030000234868	ENSGT00790000123099	ENSGT00950000182835.d.b	ENSGT00390000007725.A.a	ENSGT00940000155840.B	ENSGT00940000156858	ENSGT00390000011239.j	ENSGT00940000155529.B	ENSGT00390000004094	ENSGT01030000234550.a.a.d.a.b	ENSGT00940000166253	ENSGT00940000160423.b #28	ENSGT00940000153544.b #27	ENSGT00390000014557 #24	ENSGT00390000018003.b #22	ENSGT00390000008702 #23	ENSGT00940000159389	ENSGT00390000016138	ENSGT00950000183205.b.a.b.a.b	ENSGT00940000155486	ENSGT00940000158917	ENSGT00950000183146.a.a	ENSGT00940000158600	ENSGT00950000182866.D.d.a.c.b.a.a.b.a	ENSGT00940000177278.b	ENSGT00940000163701.b.a.a.a.b.d	ENSGT00390000007658	ENSGT00530000063790.a.a	ENSGT00730000111209	ENSGT00940000158755
Burton s mouthbrooder	MODERN SPECIES	627										coa6 (ENSHBUG00000011393)	slc13a4 (ENSHBUG00000011465)	zgc:162331 (ENSHBUG00000011481)	BMAL2 (ENSHBUG00000011501) #28	stk38l (ENSHBUG00000011539) #27	med21 (ENSHBUG00000011560) #24	fgfr1op2 (ENSHBUG00000011584) #22	TM7SF3 (ENSHBUG00000011594) #23	gas2l3 (ENSHBUG00000011600)	arid2 (ENSHBUG00000011615)	ENSHBUG00000011628	slc38a2 (ENSHBUG00000011731)	slc38a4 (ENSHBUG00000011860)	ENSHBUG00000011884	ANO4 (ENSHBUG00000000330)	NXPE3 (ENSHBUG00000011938)
Haplochromini_A	ANCESTRAL SPECIES	9	ENSGT01030000234868	ENSGT00790000123099	ENSGT00950000182835.d.b	ENSGT00390000007725.A.a	ENSGT00940000180345	ENSGT00940000155840.B	ENSGT00940000156858	ENSGT00390000011239.j	ENSGT00940000155529.B	ENSGT00390000004094	ENSGT01030000234550.a.a.d.a.b	ENSGT00940000166253	ENSGT00940000160423.b #28	ENSGT00940000153544.b #27	ENSGT00390000014557 #24	ENSGT00390000018003.b #22	ENSGT00390000008702 #23	ENSGT00940000159389	ENSGT00390000016138	ENSGT00950000183205.b.a.b.a.b	ENSGT00940000155486	ENSGT00940000158917	ENSGT00950000183146.a.a	ENSGT00940000158600	ENSGT00950000182866.D.d.a.c.b.a.a.b.a	ENSGT00900000141362.a.b.c.b	ENSGT00940000177278.b	ENSGT00940000163701.b.a.a.a.b.d	ENSGT00390000007658	ENSGT00530000063790.a.a	ENSGT00730000111209
Haplochromini_B	ANCESTRAL SPECIES	32	ENSGT01030000234868	ENSGT00790000123099	ENSGT00950000182835.d.b	ENSGT00390000007725.A.a	ENSGT00940000180345	ENSGT00940000155840.B	ENSGT00940000156858	ENSGT00390000011239.j	ENSGT00940000155529.B	ENSGT00390000004094	ENSGT01030000234550.a.a.d.a.b	ENSGT00940000166253	ENSGT00940000160423.b #28	ENSGT00940000153544.b #27	ENSGT00390000014557 #24	ENSGT00390000018003.b #22	ENSGT00390000008702 #23	ENSGT00940000159389	ENSGT00390000016138	ENSGT00950000183205.b.a.b.a.b	ENSGT00940000155486	ENSGT00940000158917	ENSGT00950000183146.a.a	ENSGT00940000158600	ENSGT00950000182866.D.d.a.c.b.a.a.b.a	ENSGT00900000141362.a.b.c.b	ENSGT00940000177278.b	ENSGT00940000163701.b.a.a.a.b.d	ENSGT00390000007658	ENSGT00530000063790.a.a	ENSGT00730000111209
Eastern happy	DUPLICATION
Eastern happy	MODERN SPECIES	94												ENSACLG00000016266	BMAL2 (ENSACLG00000016219) #28	stk38l (ENSACLG00000016152) #27	med21 (ENSACLG00000016034) #24	fgfr1op2 (ENSACLG00000016006) #22	TM7SF3 (ENSACLG00000015981) #23
Eastern happy	MODERN SPECIES	8	pfkfb3 (ENSACLG00000003821)	ntf3 (ENSACLG00000003808)	ENSACLG00000003807	ENSACLG00000003789	ano2b (ENSACLG00000003747)	pik3cg (ENSACLG00000003623)	HBP1 (ENSACLG00000003606)	ENSACLG00000003598	ENSACLG00000003402	coa6 (ENSACLG00000003382)	slc13a4 (ENSACLG00000003198)	ENSACLG00000003159	BMAL2 (ENSACLG00000003135) #28	stk38l (ENSACLG00000003108) #27	med21 (ENSACLG00000003091) #24	fgfr1op2 (ENSACLG00000003074) #22	TM7SF3 (ENSACLG00000003053) #23	gas2l3 (ENSACLG00000003042)	arid2 (ENSACLG00000002996)	ENSACLG00000002985	slc38a2 (ENSACLG00000002877)	slc38a4 (ENSACLG00000002621)	ENSACLG00000002578	ANO4 (ENSACLG00000002503)	NXPE3 (ENSACLG00000002491)	ENSACLG00000002484	ccl25b (ENSACLG00000002474)	ENSACLG00000002469	ENSACLG00000002468	ccl25b (ENSACLG00000002259)	ENSACLG00000002234
Zebra mbuna	MODERN SPECIES	1099	ENSMZEG00005015191	rbm17 (ENSMZEG00005015179)	pfkfb3 (ENSMZEG00005015156)	ntf3 (ENSMZEG00005015143)	ENSMZEG00005015136	ano2b (ENSMZEG00005015108)	pik3cg (ENSMZEG00005015075)	HBP1 (ENSMZEG00005015065)	ENSMZEG00005015037	coa6 (ENSMZEG00005015021)	slc13a4 (ENSMZEG00005015009)	zgc:162331 (ENSMZEG00005015004)	BMAL2 (ENSMZEG00005014994) #28	stk38l (ENSMZEG00005014981) #27	med21 (ENSMZEG00005014971) #24	fgfr1op2 (ENSMZEG00005014955) #22	TM7SF3 (ENSMZEG00005014944) #23	gas2l3 (ENSMZEG00005014932)	arid2 (ENSMZEG00005014910)	ENSMZEG00005014878	slc38a2 (ENSMZEG00005014826)	slc38a4 (ENSMZEG00005014625)	AMIGO2 (ENSMZEG00005014613)	ANO4 (ENSMZEG00005014601)	NXPE3 (ENSMZEG00005014593)	ccl25b (ENSMZEG00005014587)	ENSMZEG00005014582	ENSMZEG00005014576	ENSMZEG00005014574	ENSMZEG00005014569	ENSMZEG00005014562
P. nyererei	MODERN SPECIES	425	rbm17 (ENSPNYG00000015274)	pfkfb3 (ENSPNYG00000015242)	ntf3 (ENSPNYG00000015225)	ENSPNYG00000015213	ano2b (ENSPNYG00000015160)	pik3cg (ENSPNYG00000015089)	HBP1 (ENSPNYG00000015063)	ENSPNYG00000015039	ENSPNYG00000015005	coa6 (ENSPNYG00000014994)	slc13a4 (ENSPNYG00000014890)	zgc:162331 (ENSPNYG00000014841)	BMAL2 (ENSPNYG00000014760) #28	stk38l (ENSPNYG00000014721) #27	med21 (ENSPNYG00000014699) #24	fgfr1op2 (ENSPNYG00000014678) #22	TM7SF3 (ENSPNYG00000014644) #23	gas2l3 (ENSPNYG00000014617)	arid2 (ENSPNYG00000014572)	ENSPNYG00000014553	slc38a2 (ENSPNYG00000014524)	slc38a4 (ENSPNYG00000014426)	AMIGO2 (ENSPNYG00000014386)	ANO4 (ENSPNYG00000014338)	NXPE3 (ENSPNYG00000014322)	ccl25b (ENSPNYG00000014303)	TTC22 (ENSPNYG00000014284)	lurap1 (ENSPNYG00000014267)	lepr (ENSPNYG00000014229)	DNAJC6 (ENSPNYG00000014192)	ak4 (ENSPNYG00000014169)
Lyretail cichlid	MODERN SPECIES	452	rbm17 (ENSNBRG00000018148)	pfkfb3 (ENSNBRG00000018116)	ntf3 (ENSNBRG00000018088)	ENSNBRG00000018062	ano2b (ENSNBRG00000018025)	pik3cg (ENSNBRG00000017863)	HBP1 (ENSNBRG00000017820)	ENSNBRG00000017799	ENSNBRG00000017771	coa6 (ENSNBRG00000017744)	ENSNBRG00000017727	zgc:162331 (ENSNBRG00000017703)	BMAL2 (ENSNBRG00000017680) #28	stk38l (ENSNBRG00000017648) #27	med21 (ENSNBRG00000017627) #24	fgfr1op2 (ENSNBRG00000017612) #22	TM7SF3 (ENSNBRG00000017579) #23	gas2l3 (ENSNBRG00000017561)	arid2 (ENSNBRG00000017384)	ENSNBRG00000017361	slc38a2 (ENSNBRG00000017344)	slc38a4 (ENSNBRG00000017301)	ENSNBRG00000017277	ANO4 (ENSNBRG00000017237)	NXPE3 (ENSNBRG00000017221)
Nile tilapia	MODERN SPECIES	8	rbm17 (ENSONIG00000011838)	pfkfb3 (ENSONIG00000011845)	ENSONIG00000035778	ntf3 (ENSONIG00000029615)	ano2b (ENSONIG00000011849)	pik3cg (ENSONIG00000011855)	ENSONIG00000036033	HBP1 (ENSONIG00000011868)	ENSONIG00000011873	coa6 (ENSONIG00000041513)	slc13a4 (ENSONIG00000011885)	zgc:162331 (ENSONIG00000011886)	BMAL2 (ENSONIG00000011887) #28	stk38l (ENSONIG00000011890) #27	med21 (ENSONIG00000035522) #24	fgfr1op2 (ENSONIG00000011894) #22	TM7SF3 (ENSONIG00000011896) #23	gas2l3 (ENSONIG00000011899)	arid2 (ENSONIG00000011901)	ENSONIG00000011907	slc38a4 (ENSONIG00000011911)	AMIGO2 (ENSONIG00000037740)	ANO4 (ENSONIG00000011913)	NXPE3 (ENSONIG00000014091)	ENSONIG00000031592	ENSONIG00000009979	ccl25b (ENSONIG00000040787)	ENSONIG00000009981	ENSONIG00000011921	ENSONIG00000011923	lurap1 (ENSONIG00000037764)
Midas cichlid	MODERN SPECIES	1220								HBP1 (ENSACIG00000019093)	ENSACIG00000019112	coa6 (ENSACIG00000019148)	slc13a4 (ENSACIG00000019181)	zgc:162331 (ENSACIG00000019255)	BMAL2 (ENSACIG00000019264) #28	stk38l (ENSACIG00000019280) #27	med21 (ENSACIG00000019296) #24	fgfr1op2 (ENSACIG00000019298) #22	TM7SF3 (ENSACIG00000019307) #23	gas2l3 (ENSACIG00000019340)	arid2 (ENSACIG00000019419)	ENSACIG00000019737	slc38a2 (ENSACIG00000019848)	slc38a4 (ENSACIG00000019882)
Atherinomorphae	ANCESTRAL SPECIES	21	ENSGT00390000011669	ENSGT01030000234868	ENSGT00790000123099	ENSGT00950000182835.d.b	ENSGT00390000007725.A.a	ENSGT00940000155840.B	ENSGT00940000156858	ENSGT00390000011239.j	ENSGT00940000155529.B	ENSGT00390000004094	ENSGT01030000234550.a.a.d.a.b	ENSGT00940000166253	ENSGT00940000160423.b #28	ENSGT00940000153544.b #27	ENSGT00390000014557 #24	ENSGT00390000018003.b #22	ENSGT00390000008702 #23	ENSGT00940000159389	ENSGT00390000016138	ENSGT00950000183205.b.a.b.a.b	ENSGT00940000155486	ENSGT00940000158917	ENSGT00950000183146.a.a	ENSGT00940000158600	ENSGT00950000182866.D.d.a.c.b.a.a	ENSGT00940000164836.l	ENSGT00940000164836.k	ENSGT01070000253760.b.b.a.a.c.b	ENSGT00390000005508.a.b	ENSGT01100000263533.b.b.b.a.b.a.b	ENSGT00530000063540.b
Cyprinodontiformes	ANCESTRAL SPECIES	19	ENSGT00390000011669	ENSGT00970000193629	ENSGT00790000123099	ENSGT00950000182835.d.b	ENSGT00390000007725.A.a	ENSGT00940000155840.B	ENSGT00940000156858	ENSGT00390000011239.j	ENSGT00940000155529.B	ENSGT00390000004094	ENSGT01030000234550.a.a.d.a.b	ENSGT00940000166253	ENSGT00940000160423.b #28	ENSGT00940000153544.b #27	ENSGT00390000014557 #24	ENSGT00390000018003.b #22	ENSGT00390000008702 #23	ENSGT00940000159389	ENSGT00390000016138	ENSGT00950000183205.b.a.b.a.b	ENSGT00940000155486	ENSGT00940000158917	ENSGT00950000183146.a.a	ENSGT00940000158600	ENSGT00950000182866.D.d.a.c.b.a.a	ENSGT00940000164836.l	ENSGT00940000164836.k	ENSGT01070000253760.b.b.a.a.c.b	ENSGT00390000005508.a.b	ENSGT01100000263533.b.b.b.a.b.a.b	ENSGT00530000063540.b
Aplocheiloidei	ANCESTRAL SPECIES	14	ENSGT00390000011669	ENSGT00970000193629	ENSGT00790000123099	ENSGT00950000182835.d.b	ENSGT00390000007725.A.a	ENSGT00940000155840.B	ENSGT00940000156858	ENSGT00390000011239.j	ENSGT00940000155529.B	ENSGT00390000004094	ENSGT01030000234550.a.a.d.a.b	ENSGT00940000166253	ENSGT00940000160423.b #28	ENSGT00940000153544.b #27	ENSGT00390000014557 #24	ENSGT00390000018003.b #22	ENSGT00390000008702 #23	ENSGT00940000159389	ENSGT00390000016138	ENSGT00950000183205.b.a.b.a.b	ENSGT00940000155486	ENSGT00940000158917	ENSGT00950000183146.a.a	ENSGT00940000158600	ENSGT00950000182866.D.d.a.c.b.a.a	ENSGT00940000164836.l	ENSGT00940000164836.k
Turquoise killifish	MODERN SPECIES	1610	pfkfb3 (ENSNFUG00015021060)	ENSNFUG00015021192	ntf3 (ENSNFUG00015021195)	ENSNFUG00015021198	ano2b (ENSNFUG00015021223)	ENSNFUG00015021608	PIK3CG (ENSNFUG00015021624)	HBP1 (ENSNFUG00015021659)	PTPRZ1B (ENSNFUG00015021707)	ENSNFUG00015022448	coa6 (ENSNFUG00015022449)	SLC13A4 (ENSNFUG00015022456)	Nfu_g_1_011670 (ENSNFUG00015022467)	BMAL2 (ENSNFUG00015022471) #28	stk38l (ENSNFUG00015022481) #27	FGFR1OP2 (ENSNFUG00015000049) #22	TM7SF3 (ENSNFUG00015000050) #23	GAS2L3 (ENSNFUG00015000052)	ARID2 (ENSNFUG00015000054)	ENSNFUG00015000058	ENSNFUG00015000063	slc38a2 (ENSNFUG00015000127)	slc38a4 (ENSNFUG00015000352)	AMIGO2 (ENSNFUG00015000544)	ANO4 (ENSNFUG00015000600)	NXPE3 (ENSNFUG00015000758)	ENSNFUG00015000763	ENSNFUG00015000786	SLC26A5 (ENSNFUG00015000843)	psmc2 (ENSNFUG00015001194)	dnajc2 (ENSNFUG00015001233)
Mangrove rivulus	MODERN SPECIES	156												zgc:162331 (ENSKMAG00000000342)	ENSKMAG00000000295 #28	stk38l (ENSKMAG00000000273) #27	med21 (ENSKMAG00000000237) #24	fgfr1op2 (ENSKMAG00000000190) #22	TM7SF3 (ENSKMAG00000000173) #23	arid2 (ENSKMAG00000021375)	ENSKMAG00000021359	slc38a2 (ENSKMAG00000021340)	slc38a4 (ENSKMAG00000021317)	ENSKMAG00000021299	osgep (ENSKMAG00000021284)	ANO4 (ENSKMAG00000021213)	ENSKMAG00000021187	ENSKMAG00000021180	apex1 (ENSKMAG00000021171)	osgep (ENSKMAG00000021157)	si:ch211-214j24.10 (ENSKMAG00000021149)	ENSKMAG00000021134	ENSKMAG00000021124
Cyprinodontoidei	ANCESTRAL SPECIES	59	ENSGT00940000154045.a	ENSGT00970000193629.a	ENSGT00790000123099	ENSGT00950000182835.d.b	ENSGT00390000007725.A.a	ENSGT00940000155840.B	ENSGT00940000156858	ENSGT00390000011239.j	ENSGT00940000155529.B	ENSGT00390000004094	ENSGT01030000234550.a.a.d.a.b	ENSGT00940000166253	ENSGT00940000160423.b #28	ENSGT00940000153544.b #27	ENSGT00390000014557 #24	ENSGT00390000018003.b #22	ENSGT00390000008702 #23	ENSGT00940000159389	ENSGT00390000016138	ENSGT00950000183205.b.a.b.a.b	ENSGT00940000155486	ENSGT00940000158917	ENSGT00950000183146.a.a	ENSGT00940000158600	ENSGT00950000182866.D.d.a.c.b.a.a.e.b
NAME_4	ANCESTRAL SPECIES	224					ENSGT00390000007725.A.a	ENSGT00940000155840.B	ENSGT00940000156858	ENSGT00390000011239.j	ENSGT00940000155529.B	ENSGT00390000004094	ENSGT01030000234550.a.a.d.a.b	ENSGT00940000166253	ENSGT00940000160423.b #28	ENSGT00940000153544.b #27	ENSGT00390000014557 #24	ENSGT00390000018003.b #22	ENSGT00390000008702 #23	ENSGT00940000159389	ENSGT00390000016138	ENSGT00950000183205.b.a.b.a.b	ENSGT00940000155486	ENSGT00940000158917	ENSGT00950000183146.a.a	ENSGT00940000158600	ENSGT00950000182866.D.d.a.c.b.a.a.e.b
Mummichog	MODERN SPECIES	446												BMAL2 (ENSFHEG00000014324) #28	stk38l (ENSFHEG00000014359) #27	ENSFHEG00000014389	med21 (ENSFHEG00000014409) #24	fgfr1op2 (ENSFHEG00000014424) #22	TM7SF3 (ENSFHEG00000014434) #23	gas2l3 (ENSFHEG00000014448)	arid2 (ENSFHEG00000014576)	ENSFHEG00000014599	ENSFHEG00000014657	ENSFHEG00000014671	slc38a2 (ENSFHEG00000014685)	slc38a4 (ENSFHEG00000014709)
Sheepshead minnow	MODERN SPECIES	284			ntf3 (ENSCVAG00000008650)	ENSCVAG00000008646	ENSCVAG00000008627	pik3cg (ENSCVAG00000008593)	HBP1 (ENSCVAG00000008501)	ENSCVAG00000008489	ENSCVAG00000008464	coa6 (ENSCVAG00000008426)	slc13a4 (ENSCVAG00000008415)	zgc:162331 (ENSCVAG00000008299)	BMAL2 (ENSCVAG00000008294) #28	stk38l (ENSCVAG00000008285) #27	med21 (ENSCVAG00000008236) #24	fgfr1op2 (ENSCVAG00000008216) #22	TM7SF3 (ENSCVAG00000008189) #23	gas2l3 (ENSCVAG00000008174)	ENSCVAG00000008161	phlda1 (ENSCVAG00000008139)	nap1l1 (ENSCVAG00000008122)	ENSCVAG00000008088	OSBPL8 (ENSCVAG00000008079)	zdhhc17 (ENSCVAG00000008052)	csrp2 (ENSCVAG00000008039)	e2f7 (ENSCVAG00000008019)	ENSCVAG00000007982	ENSCVAG00000007199	ENSCVAG00000007181	ENSCVAG00000007163	ENSCVAG00000000638
Poeciliinae	ANCESTRAL SPECIES	19	ENSGT00940000154045.a	ENSGT00970000193629.a	ENSGT00790000123099	ENSGT00950000182835.d.b	ENSGT00390000007725.A.a	ENSGT00940000155840.B	ENSGT00940000156858	ENSGT00390000011239.j	ENSGT00940000155529.B	ENSGT00390000004094	ENSGT01030000234550.a.a.d.a.b	ENSGT00940000166253	ENSGT00940000160423.b #28	ENSGT00940000153544.b #27	ENSGT00390000014557 #24	ENSGT00390000018003.b #22	ENSGT00390000008702 #23	ENSGT00940000159389	ENSGT00390000016138	ENSGT00950000183205.b.a.b.a.b	ENSGT00940000155486.l.a.b	ENSGT00940000155486.l.b.b	ENSGT00940000155486.l.b.a	ENSGT00940000158917	ENSGT00950000183146.a.a	ENSGT00940000158600	ENSGT00950000182866.D.d.a.c.b.a.a.e.b	ENSGT00950000182866.D.d.a.c.b.a.a.f	ENSGT00940000164836.l.a	ENSGT00940000164836.l.b	ENSGT00940000164836.k
Poecilia	ANCESTRAL SPECIES	47	ENSGT00940000154045.a	ENSGT00970000193629.a	ENSGT00790000123099	ENSGT00950000182835.d.b	ENSGT00390000007725.A.a	ENSGT00940000155840.B	ENSGT00940000156858	ENSGT00390000011239.j	ENSGT00940000155529.B	ENSGT00390000004094	ENSGT01030000234550.a.a.d.a.b	ENSGT00940000166253	ENSGT00940000160423.b #28	ENSGT00940000153544.b #27	ENSGT00390000014557 #24	ENSGT00390000018003.b #22	ENSGT00390000008702 #23	ENSGT00940000159389	ENSGT00390000016138	ENSGT00950000183205.b.a.b.a.b	ENSGT00940000155486.l.a.b	ENSGT00940000155486.l.b.b	ENSGT00940000155486.l.b.a	ENSGT00940000158917	ENSGT00950000183146.a.a	ENSGT00940000158600	ENSGT00950000182866.D.d.a.c.b.a.a.e.b	ENSGT00950000182866.D.d.a.c.b.a.a.e.a.b.a.a	ENSGT00950000182866.D.d.a.c.b.a.a.e.a.b.b.b	ENSGT00950000182866.D.d.a.c.b.a.a.e.a.a.a	ENSGT00950000182866.D.d.a.c.b.a.a.e.a.b.b.a
NAME_6	ANCESTRAL SPECIES	84	ENSGT00940000154045.a	ENSGT00970000193629.a	ENSGT00790000123099	ENSGT00950000182835.d.b	ENSGT00390000007725.A.a	ENSGT00940000155840.B	ENSGT00940000156858	ENSGT00390000011239.j	ENSGT00940000155529.B	ENSGT00390000004094	ENSGT01030000234550.a.a.d.a.b	ENSGT00940000166253	ENSGT00940000160423.b #28	ENSGT00940000153544.b #27	ENSGT00390000014557 #24	ENSGT00390000018003.b #22	ENSGT00390000008702 #23	ENSGT00940000159389	ENSGT00390000016138	ENSGT00950000183205.b.a.b.a.b	ENSGT00940000155486.l.a.a	ENSGT00940000155486.l.b.a.b	ENSGT00940000155486.l.b.b	ENSGT00940000155486.l.b.a.a.a	ENSGT00940000158917	ENSGT00950000183146.a.a	ENSGT00940000158600	ENSGT00950000182866.D.d.a.c.b.a.a.e.b	ENSGT00950000182866.D.d.a.c.b.a.a.e.a.b.a.a.c	ENSGT00950000182866.D.d.a.c.b.a.a.e.a.b.b.b	ENSGT00950000182866.D.d.a.c.b.a.a.e.a.b.a.a.d
Amazon molly	MODERN SPECIES	534	rbm17 (ENSPFOG00000013271)	pfkfb3 (ENSPFOG00000013115)	ENSPFOG00000023053	ntf3 (ENSPFOG00000013104)	ano2b (ENSPFOG00000012602)	pik3cg (ENSPFOG00000012367)	HBP1 (ENSPFOG00000012271)	ENSPFOG00000012104	coa6 (ENSPFOG00000012095)	slc13a4 (ENSPFOG00000012014)	zgc:162331 (ENSPFOG00000012000)	ENSPFOG00000024504	BMAL2 (ENSPFOG00000011809) #28	stk38l (ENSPFOG00000011622) #27	med21 (ENSPFOG00000011604) #24	fgfr1op2 (ENSPFOG00000011571) #22	TM7SF3 (ENSPFOG00000011451) #23	gas2l3 (ENSPFOG00000011399)	arid2 (ENSPFOG00000011270)	ENSPFOG00000011245	slc38a2 (ENSPFOG00000023397)	slc38a2 (ENSPFOG00000022365)	slc38a2 (ENSPFOG00000024186)	slc38a2 (ENSPFOG00000010783)
Sailfin molly	MODERN SPECIES	186				ntf3 (ENSPLAG00000012505)	ano2b (ENSPLAG00000012561)	pik3cg (ENSPLAG00000012648)	ENSPLAG00000012669	ENSPLAG00000012681	ENSPLAG00000012709	coa6 (ENSPLAG00000012723)	slc13a4 (ENSPLAG00000012732)	zgc:162331 (ENSPLAG00000012742)	BMAL2 (ENSPLAG00000013345) #28	stk38l (ENSPLAG00000013404) #27	med21 (ENSPLAG00000013420) #24	fgfr1op2 (ENSPLAG00000013432) #22	TM7SF3 (ENSPLAG00000013443) #23	gas2l3 (ENSPLAG00000013455)	arid2 (ENSPLAG00000013482)	ENSPLAG00000013570	ENSPLAG00000013588	slc38a2 (ENSPLAG00000013621)
Guppy	MODERN SPECIES	454	ENSPREG00000015622	rbm17 (ENSPREG00000015589)	pfkfb3 (ENSPREG00000015508)	ENSPREG00000015466	ntf3 (ENSPREG00000015457)	ano2b (ENSPREG00000015361)	pik3cg (ENSPREG00000015272)	HBP1 (ENSPREG00000015242)	ENSPREG00000015185	coa6 (ENSPREG00000015160)	slc13a4 (ENSPREG00000015134)	zgc:162331 (ENSPREG00000015122)	BMAL2 (ENSPREG00000015103) #28	stk38l (ENSPREG00000015077) #27	med21 (ENSPREG00000015064) #24	fgfr1op2 (ENSPREG00000015055) #22	TM7SF3 (ENSPREG00000015032) #23	gas2l3 (ENSPREG00000015012)	arid2 (ENSPREG00000014960)	ENSPREG00000014901	slc38a2 (ENSPREG00000014855)	slc38a2 (ENSPREG00000014808)	slc38a2 (ENSPREG00000014787)	slc38a4 (ENSPREG00000014746)	ENSPREG00000014739	ANO4 (ENSPREG00000014703)	ENSPREG00000014687	NXPE3 (ENSPREG00000014669)	ENSPREG00000014641	NXPE3 (ENSPREG00000014596)	NXPE3 (ENSPREG00000014579)
Platyfish	MODERN SPECIES	8	ENSXMAG00000024638	rbm17 (ENSXMAG00000008674)	pfkfb3 (ENSXMAG00000008689)	ENSXMAG00000026616	ntf3 (ENSXMAG00000028585)	ano2b (ENSXMAG00000008729)	pik3cg (ENSXMAG00000008792)	HBP1 (ENSXMAG00000007586)	ENSXMAG00000008823	coa6 (ENSXMAG00000008857)	slc13a4 (ENSXMAG00000008858)	zgc:162331 (ENSXMAG00000024273)	BMAL2 (ENSXMAG00000008892) #28	stk38l (ENSXMAG00000025251) #27	med21 (ENSXMAG00000027464) #24	fgfr1op2 (ENSXMAG00000008947) #22	TM7SF3 (ENSXMAG00000008953) #23	gas2l3 (ENSXMAG00000008963)	arid2 (ENSXMAG00000006636)	ENSXMAG00000021822	ENSXMAG00000027633	slc38a2 (ENSXMAG00000026557)	slc38a2 (ENSXMAG00000020966)	ENSXMAG00000024232	slc38a2 (ENSXMAG00000024283)	slc38a2 (ENSXMAG00000024689)	slc38a2 (ENSXMAG00000027686)	slc38a2 (ENSXMAG00000000485)	slc38a2 (ENSXMAG00000028934)	slc38a4 (ENSXMAG00000006133)	ENSXMAG00000028370
Oryzias	ANCESTRAL SPECIES	20	ENSGT00390000011669	ENSGT01030000234868	ENSGT00790000123099	ENSGT00950000182835.d.b	ENSGT00390000007725.A.a	ENSGT00940000155840.B	ENSGT00940000156858	ENSGT00390000011239.j	ENSGT00940000155529.B	ENSGT00390000004094	ENSGT01030000234550.a.a.d.a.b	ENSGT00940000166253	ENSGT00940000160423.b #28	ENSGT00940000153544.b #27	ENSGT00390000014557 #24	ENSGT00390000018003.b #22	ENSGT00390000008702 #23	ENSGT00940000159389	ENSGT00390000016138.w	ENSGT00950000183205.b.a.b.a.b	ENSGT00940000155486	ENSGT00940000158917	ENSGT00950000183146.a.a	ENSGT00940000158600	ENSGT00950000182866.D.d.a.c.b.a.a	ENSGT00390000011401	ENSGT00940000156154	ENSGT00940000158497	ENSGT00940000154471.a.b.a.b.u.b	ENSGT00940000155197	ENSGT00940000154098.a.f
Oryzias_a	ANCESTRAL SPECIES	53	ENSGT00390000011669	ENSGT01030000234868	ENSGT00790000123099	ENSGT00950000182835.d.b	ENSGT00390000007725.A.a	ENSGT00940000155840.B	ENSGT00940000156858	ENSGT00390000011239.j	ENSGT00940000155529.B	ENSGT00390000004094	ENSGT01030000234550.a.a.d.a.b	ENSGT00940000166253	ENSGT00940000160423.b #28	ENSGT00940000153544.b #27	ENSGT00390000014557 #24	ENSGT00390000018003.b #22	ENSGT00390000008702 #23	ENSGT00940000159389	ENSGT00390000016138.w	ENSGT00950000183205.b.a.b.a.b	ENSGT00940000155486	ENSGT00940000158917	ENSGT00950000183146.a.a	ENSGT00940000158600	ENSGT00950000182866.D.d.a.c.b.a.a	ENSGT00390000011401	ENSGT00940000156154	ENSGT00940000158497	ENSGT00940000154471.a.b.a.b.u.b	ENSGT00940000155197	ENSGT00940000154098.a.f
Chinese medaka	MODERN SPECIES	227							pik3cg (ENSOSIG00000000525)	HBP1 (ENSOSIG00000000517)	ENSOSIG00000000274	coa6 (ENSOSIG00000000248)	slc13a4 (ENSOSIG00000000197)	zgc:162331 (ENSOSIG00000000155)	BMAL2 (ENSOSIG00000000131) #28	stk38l (ENSOSIG00000000101) #27	med21 (ENSOSIG00000000072) #24	fgfr1op2 (ENSOSIG00000000060) #22	TM7SF3 (ENSOSIG00000023499) #23	gas2l3 (ENSOSIG00000023493)	arid2 (ENSOSIG00000023484)	ENSOSIG00000023472	slc38a2 (ENSOSIG00000023465)	slc38a4 (ENSOSIG00000023436)	ENSOSIG00000023425	ANO4 (ENSOSIG00000023423)
Japanese Medaka HdrR	MODERN SPECIES	15	ENSORLG00000009367	rbm17 (ENSORLG00000028798)	pfkfb3 (ENSORLG00000009391)	ntf3 (ENSORLG00000023241)	ENSORLG00000009412	pik3cg (ENSORLG00000009458)	ENSORLG00000009474	ENSORLG00000024640	ENSORLG00000009516	coa6 (ENSORLG00000026792)	slc13a4 (ENSORLG00000025248)	zgc:162331 (ENSORLG00000029239)	BMAL2 (ENSORLG00000009536) #28	stk38l (ENSORLG00000009571) #27	med21 (ENSORLG00000009581) #24	fgfr1op2 (ENSORLG00000009602) #22	TM7SF3 (ENSORLG00000009613) #23	gas2l3 (ENSORLG00000009624)	arid2 (ENSORLG00000009649)	ENSORLG00000028222	slc38a2 (ENSORLG00000009787)	slc38a4 (ENSORLG00000028149)	ANO4 (ENSORLG00000022167)	ENSORLG00000009808	ENSORLG00000027436	ENSORLG00000009799	ENSORLG00000028212	mrps33 (ENSORLG00000023919)	braf (ENSORLG00000009843)	large1 (ENSORLG00000009895)	ENSORLG00000009922
Oryzias_b	ANCESTRAL SPECIES	99												ENSGT00940000166253	ENSGT00940000160423.b #28	ENSGT00940000153544.b #27	ENSGT00390000014557 #24	ENSGT00390000018003.b #22	ENSGT00390000008702 #23	ENSGT00940000159389	ENSGT00390000016138.w	ENSGT00950000183205.b.a.b.a.b	ENSGT00940000155486	ENSGT00940000158917	ENSGT00950000183146.a.a	ENSGT00940000158600	ENSGT00950000182866.D.d.a.c.b.a.a	ENSGT00390000011401	ENSGT00940000156154
Indian medaka	MODERN SPECIES	25	si:ch73-252i11.1 (ENSOMEG00000023360)	ENSOMEG00000023346	ENSOMEG00000023334	cdk17 (ENSOMEG00000023314)	ELK3 (ENSOMEG00000023277)	hcfc2 (ENSOMEG00000023260)	ENSOMEG00000023248	ENSOMEG00000023232	ENSOMEG00000023219	ENSOMEG00000023201	ENSOMEG00000023168	zgc:162331 (ENSOMEG00000023156)	BMAL2 (ENSOMEG00000023136) #28	stk38l (ENSOMEG00000023118) #27	med21 (ENSOMEG00000023088) #24	fgfr1op2 (ENSOMEG00000023082) #22	TM7SF3 (ENSOMEG00000023072) #23	gas2l3 (ENSOMEG00000023057)	arid2 (ENSOMEG00000023033)	ENSOMEG00000023006	ENSOMEG00000022988	slc38a2 (ENSOMEG00000022979)	slc38a4 (ENSOMEG00000022958)
Javanese ricefish	MODERN SPECIES	15	hspa14 (ENSOJAG00000022136)	ENSOJAG00000022131	ENSOJAG00000022124	ENSOJAG00000022117	ano2b (ENSOJAG00000021524)	ENSOJAG00000021494	ENSOJAG00000021481	fbxo18 (ENSOJAG00000021440)	ENSOJAG00000021432	rbm17 (ENSOJAG00000021422)	pfkfb3 (ENSOJAG00000020626)	ntf3 (ENSOJAG00000020584)	BMAL2 (ENSOJAG00000020544) #28	stk38l (ENSOJAG00000020521) #27	med21 (ENSOJAG00000020502) #24	fgfr1op2 (ENSOJAG00000020488) #22	TM7SF3 (ENSOJAG00000020446) #23	gas2l3 (ENSOJAG00000020349)	arid2 (ENSOJAG00000020285)	ENSOJAG00000020219	slc38a4 (ENSOJAG00000019017)	ENSOJAG00000018905	ANO4 (ENSOJAG00000018236)	NXPE3 (ENSOJAG00000018163)	NXPE3 (ENSOJAG00000018142)	mrps33 (ENSOJAG00000018112)	braf (ENSOJAG00000017950)	ENSOJAG00000017939	ENSOJAG00000017931	ssuh2rs1 (ENSOJAG00000017866)	ssuh2rs1 (ENSOJAG00000017839)
Percomorphaceae_C	ANCESTRAL SPECIES	22	ENSGT01030000234868	ENSGT00790000123099	ENSGT00950000182835.d.b	ENSGT00390000007725.A.a	ENSGT00940000179100	ENSGT00940000155840.B	ENSGT00940000156858	ENSGT00390000011239.j	ENSGT00940000155529.B	ENSGT00390000004094	ENSGT01030000234550.a.a.d.a.b	ENSGT00940000166253	ENSGT00940000160423.b #28	ENSGT00940000153544.b #27	ENSGT00390000014557 #24	ENSGT00390000018003.b #22	ENSGT00390000008702 #23	ENSGT00940000159389	ENSGT00390000016138	ENSGT00980000203435	ENSGT00950000183205.b.a.b.a.b	ENSGT00940000155486	ENSGT00940000158917	ENSGT00950000183146.a.a	ENSGT00940000158600	ENSGT00950000182866.D.d.a.c.b.a.a	ENSGT00940000164836	ENSGT01070000253760.b.b.a.a.c.b	ENSGT00940000178511	ENSGT00390000005508.a.b	ENSGT01100000263533.b.b.b.a.b.a.b
Percomorphaceae_D	ANCESTRAL SPECIES	22	ENSGT00390000011669	ENSGT01030000234868	ENSGT00790000123099	ENSGT00950000182835.d.b	ENSGT00390000007725.A.a	ENSGT00940000155840.B	ENSGT00940000156858	ENSGT00390000011239.j	ENSGT00940000155529.B	ENSGT00390000004094	ENSGT01030000234550.a.a.d.a.b	ENSGT00940000166253	ENSGT00940000160423.b #28	ENSGT00940000153544.b #27	ENSGT00390000014557 #24	ENSGT00390000018003.b #22	ENSGT00390000008702 #23	ENSGT00940000159389	ENSGT00390000016138	ENSGT00980000203435	ENSGT00950000183205.b.a.b.a.b	ENSGT00940000155486	ENSGT00940000158917	ENSGT00950000183146.a.a	ENSGT00940000158600	ENSGT00950000182866.D.d.a.c.b.a.a	ENSGT00940000164836	ENSGT01070000253760.b.b.a.a.c.b	ENSGT00940000178511	ENSGT00390000005508.a.b	ENSGT01100000263533.b.b.b.a.b.a.b
Anabantaria	ANCESTRAL SPECIES	21	ENSGT00390000011669	ENSGT01030000234868	ENSGT00790000123099	ENSGT00950000182835.d.b	ENSGT00390000007725.A.a	ENSGT00940000155840.B	ENSGT00940000156858	ENSGT00390000011239.j	ENSGT00940000155529.B	ENSGT00390000004094	ENSGT01030000234550.a.a.d.a.b	ENSGT00940000166253	ENSGT00940000160423.b #28	ENSGT00940000153544.b #27	ENSGT00390000014557 #24	ENSGT00390000018003.b #22	ENSGT00390000008702 #23	ENSGT00940000159389	ENSGT00390000016138	ENSGT00980000203435	ENSGT00950000183205.b.a.b.a.b	ENSGT00940000155486	ENSGT00940000158917	ENSGT00950000183146.a.a	ENSGT00940000158600	ENSGT00950000182866.D.d.a.c.b.a.a	ENSGT00940000164836	ENSGT01070000253760.b.b.a.a.c.b	ENSGT00940000162179.e.b.a.a.b	ENSGT00530000063540.b	ENSGT00940000153744.B
Zig-zag eel	MODERN SPECIES	15	ENSMAMG00000026224	ENSMAMG00000000387	PFKFB3 (ENSMAMG00000000339)	ENSMAMG00000000333	ENSMAMG00000023595	ENSMAMG00000023590	ENSMAMG00000023588	ENSMAMG00000023583	coa6 (ENSMAMG00000024671)	slc13a4 (ENSMAMG00000023580)	ENSMAMG00000023577	zgc:162331 (ENSMAMG00000023574)	BMAL2 (ENSMAMG00000023570) #28	STK38L (ENSMAMG00000023567) #27	MED21 (ENSMAMG00000027572) #24	ENSMAMG00000023565 #22	TM7SF3 (ENSMAMG00000023564) #23	ENSMAMG00000023562	ENSMAMG00000023558	ENSMAMG00000023556	ENSMAMG00000023548	ENSMAMG00000025115	ENSMAMG00000023541	ENSMAMG00000023537	ENSMAMG00000023532	ENSMAMG00000023528	ENSMAMG00000024929	ENSMAMG00000028093	ENSMAMG00000023524	apex1 (ENSMAMG00000025566)	OSGEP (ENSMAMG00000023520)
Anabantoidei	ANCESTRAL SPECIES	26	ENSGT00390000011669	ENSGT01030000234868	ENSGT00790000123099	ENSGT00950000182835.d.b	ENSGT00390000007725.A.a	ENSGT00940000155840.B	ENSGT00940000156858	ENSGT00390000011239.j	ENSGT00940000155529.B	ENSGT00390000004094	ENSGT01030000234550.a.a.d.a.b	ENSGT00940000166253	ENSGT00940000160423.b #28	ENSGT00940000153544.b #27	ENSGT00390000014557 #24	ENSGT00390000018003.b #22	ENSGT00390000008702 #23	ENSGT00940000159389	ENSGT00390000016138	ENSGT00980000203435	ENSGT00950000183205.b.a.b.a.b	ENSGT00940000155486	ENSGT00940000158917	ENSGT00950000183146.a.a	ENSGT00940000158600	ENSGT00950000182866.D.d.a.c.b.a.a	ENSGT00940000164836	ENSGT00390000005508.a.b	ENSGT00530000063540.b	ENSGT00940000153744.B	ENSGT00390000009992
Siamese fighting fish	MODERN SPECIES	20	cdk17 (ENSBSLG00000021327)	ELK3 (ENSBSLG00000021272)	hcfc2 (ENSBSLG00000021223)	CEP83 (ENSBSLG00000021131)	ENSBSLG00000020980	ano2b (ENSBSLG00000020333)	pik3cg (ENSBSLG00000020102)	ENSBSLG00000020031	ENSBSLG00000017252	coa6 (ENSBSLG00000017054)	slc13a4 (ENSBSLG00000016752)	zgc:162331 (ENSBSLG00000016579)	BMAL2 (ENSBSLG00000015567) #28	stk38l (ENSBSLG00000015530) #27	med21 (ENSBSLG00000015513) #24	fgfr1op2 (ENSBSLG00000015501) #22	TM7SF3 (ENSBSLG00000015299) #23	gas2l3 (ENSBSLG00000015240)	arid2 (ENSBSLG00000014732)	ENSBSLG00000014681	ENSBSLG00000014649	slc38a2 (ENSBSLG00000012707)	slc38a4 (ENSBSLG00000012424)	AMIGO2 (ENSBSLG00000012407)	ANO4 (ENSBSLG00000011771)	NXPE3 (ENSBSLG00000011349)	ENSBSLG00000011346	NXPE3 (ENSBSLG00000011330)	ENSBSLG00000011318	ENSBSLG00000011314	ENSBSLG00000011305
Climbing perch	MODERN SPECIES	14	FBH1 (ENSATEG00000004547)	ENSATEG00000004469	ENSATEG00000004406	PFKFB3 (ENSATEG00000004339)	ENSATEG00000004319	ENSATEG00000004091	ENSATEG00000003954	ENSATEG00000003902	ENSATEG00000003764	coa6 (ENSATEG00000029903)	slc13a4 (ENSATEG00000003643)	zgc:162331 (ENSATEG00000029048)	BMAL2 (ENSATEG00000003606) #28	STK38L (ENSATEG00000003551) #27	MED21 (ENSATEG00000003529) #24	ENSATEG00000003500 #22	TM7SF3 (ENSATEG00000003403) #23	ENSATEG00000027440	ENSATEG00000003354	ENSATEG00000025384	ENSATEG00000003341	SLC38A2 (ENSATEG00000003326)	ENSATEG00000027439	ENSATEG00000027246	ENSATEG00000003129	ENSATEG00000003044	ENSATEG00000027900	ENSATEG00000002897	ENSATEG00000029410	apex1 (ENSATEG00000028063)	ENSATEG00000002767
Carangaria	ANCESTRAL SPECIES	22	ENSGT00390000011669	ENSGT01030000234868	ENSGT00790000123099	ENSGT00950000182835.d.b	ENSGT00390000007725.A.a	ENSGT00940000155840.B	ENSGT00940000156858	ENSGT00390000011239.j	ENSGT00940000155529.B	ENSGT00390000004094	ENSGT01030000234550.a.a.d.a.b	ENSGT00940000166253	ENSGT00940000160423.b #28	ENSGT00940000153544.b #27	ENSGT00390000014557 #24	ENSGT00390000018003.b #22	ENSGT00390000008702 #23	ENSGT00940000159389	ENSGT00390000016138	ENSGT00950000183205.b.a.b.a.b	ENSGT00940000155486	ENSGT00940000158917	ENSGT00950000183146.a.a	ENSGT00940000158600	ENSGT00950000182866.D.d.a.c.b.a.a	ENSGT00940000164836	ENSGT01070000253760.b.b.a.a.c.b	ENSGT00940000178511	ENSGT00390000005508.a.b	ENSGT01100000263533.b.b.b.a.b.a.b	ENSGT00530000063540.b
Pleuronectoidei	ANCESTRAL SPECIES	37	ENSGT00390000011669	ENSGT01030000234868	ENSGT00790000123099	ENSGT00950000182835.d.b	ENSGT00390000007725.A.a	ENSGT00940000155840.B	ENSGT00940000156858	ENSGT00390000011239.j	ENSGT00940000155529.B	ENSGT00390000004094	ENSGT01030000234550.a.a.d.a.b	ENSGT00940000166253	ENSGT00940000160423.b #28	ENSGT00940000153544.b #27	ENSGT00390000014557 #24	ENSGT00390000018003.b #22	ENSGT00390000008702 #23	ENSGT00940000159389	ENSGT00390000016138	ENSGT00950000183205.b.a.b.a.b	ENSGT00940000155486	ENSGT00940000158917	ENSGT00950000183146.a.a	ENSGT00940000158600	ENSGT00940000164836	ENSGT01070000253760.b.b.a.a.c.b	ENSGT00940000178511	ENSGT00390000005508.a.b	ENSGT01100000263519.A.b.b.a.a.c	ENSGT00530000063540.b	ENSGT00940000153744.B
Tongue sole	MODERN SPECIES	18	ENSCSEG00000017603	ENSCSEG00000017564	ENSCSEG00000017547	ENSCSEG00000017539	si:ch211-214j24.10 (ENSCSEG00000017523)	osgep (ENSCSEG00000017510)	apex1 (ENSCSEG00000017499)	ENSCSEG00000017488	ANO4 (ENSCSEG00000017464)	coa6 (ENSCSEG00000017454)	slc13a4 (ENSCSEG00000017438)	zgc:162331 (ENSCSEG00000017428)	BMAL2 (ENSCSEG00000017417) #28	stk38l (ENSCSEG00000017396) #27	med21 (ENSCSEG00000017391) #24	fgfr1op2 (ENSCSEG00000017375) #22	TM7SF3 (ENSCSEG00000017360) #23	gas2l3 (ENSCSEG00000017311)	arid2 (ENSCSEG00000017204)	ENSCSEG00000017186	slc38a2 (ENSCSEG00000017164)	slc38a4 (ENSCSEG00000017134)	ENSCSEG00000017128	kcnc2 (ENSCSEG00000017121)	ENSCSEG00000017085	e2f7 (ENSCSEG00000017069)	csrp2 (ENSCSEG00000017059)	zdhhc17 (ENSCSEG00000017045)	ENSCSEG00000017039	OSBPL8 (ENSCSEG00000016987)	nap1l1 (ENSCSEG00000016887)
Turbot	MODERN SPECIES	11	FBH1 (ENSSMAG00000012330)	ENSSMAG00000012356	ENSSMAG00000012368	PFKFB3 (ENSSMAG00000012459)	ntf3 (ENSSMAG00000012507)	ENSSMAG00000012521	ENSSMAG00000012573	ENSSMAG00000012631	ENSSMAG00000012658	coa6 (ENSSMAG00000037204)	slc13a4 (ENSSMAG00000012703)	zgc:162331 (ENSSMAG00000030448)	BMAL2 (ENSSMAG00000012779) #28	STK38L (ENSSMAG00000012841) #27	MED21 (ENSSMAG00000033563) #24	ENSSMAG00000012917 #22	TM7SF3 (ENSSMAG00000012937) #23	ENSSMAG00000012954	arid2 (ENSSMAG00000012985)	ENSSMAG00000013031	slc38a2 (ENSSMAG00000013064)	ENSSMAG00000013118	ENSSMAG00000013169	ENSSMAG00000013173	ENSSMAG00000013233	ENSSMAG00000013267	ENSSMAG00000013277	ENSSMAG00000013281	ENSSMAG00000013291	apex1 (ENSSMAG00000028423)	ENSSMAG00000013365
Carangaria_A	ANCESTRAL SPECIES	33	ENSGT00390000011669	ENSGT01030000234868	ENSGT00790000123099	ENSGT00950000182835.d.b	ENSGT00390000007725.A.a	ENSGT00940000155840.B	ENSGT00940000156858	ENSGT00390000011239.j	ENSGT00940000155529.B	ENSGT00390000004094	ENSGT01030000234550.a.a.d.a.b	ENSGT00940000166253	ENSGT00940000160423.b #28	ENSGT00940000153544.b #27	ENSGT00390000014557 #24	ENSGT00390000018003.b #22	ENSGT00390000008702 #23	ENSGT00940000159389	ENSGT00390000016138	ENSGT00950000183205.b.a.b.a.b	ENSGT00940000155486	ENSGT00940000158917	ENSGT00950000183146.a.a	ENSGT00940000158600	ENSGT00950000182866.D.d.a.c.b.a.a	ENSGT00940000164836	ENSGT01070000253760.b.b.a.a.c.b	ENSGT00940000178511	ENSGT00390000005508.a.b	ENSGT01100000263533.b.b.b.a.b.a.b	ENSGT00530000063540.b
Seriola	ANCESTRAL SPECIES	9	ENSGT00390000011669	ENSGT01030000234868	ENSGT00790000123099	ENSGT00950000182835.d.b	ENSGT00390000007725.A.a	ENSGT00940000155840.B	ENSGT00940000156858	ENSGT00390000011239.j	ENSGT00940000155529.B	ENSGT00390000004094	ENSGT01030000234550.a.a.d.a.b	ENSGT00940000166253	ENSGT00940000160423.b #28	ENSGT00940000153544.b #27	ENSGT00390000014557 #24	ENSGT00390000018003.b #22	ENSGT00390000008702 #23	ENSGT00940000159389	ENSGT00390000016138	ENSGT00950000183205.b.a.b.a.b	ENSGT00940000155486	ENSGT00940000158917	ENSGT00950000183146.a.a	ENSGT00940000158600	ENSGT00950000182866.D.d.a.c.b.a.a	ENSGT00940000164836.q	ENSGT01070000253760.b.b.a.a.c.b	ENSGT00390000005508.a.b	ENSGT01100000263533.b.b.b.a.b.a.b	ENSGT00530000063540.b	ENSGT00940000153744.B
Yellowtail amberjack	MODERN SPECIES	2836					ntf3 (ENSSLDG00000017062)	ano2b (ENSSLDG00000017103)	pik3cg (ENSSLDG00000017243)	ENSSLDG00000017324	PTPRZ1 (ENSSLDG00000017401)	coa6 (ENSSLDG00000017456)	slc13a4 (ENSSLDG00000017527)	zgc:162331 (ENSSLDG00000017615)	BMAL2 (ENSSLDG00000017650) #28	stk38l (ENSSLDG00000017690) #27	med21 (ENSSLDG00000017720) #24	fgfr1op2 (ENSSLDG00000017737) #22	TM7SF3 (ENSSLDG00000017755) #23	gas2l3 (ENSSLDG00000017788)	arid2 (ENSSLDG00000017839)	ENSSLDG00000017905	slc38a2 (ENSSLDG00000017924)
Greater amberjack	MODERN SPECIES	60	ENSSDUG00000014987	rbm17 (ENSSDUG00000015015)	pfkfb3 (ENSSDUG00000015089)	ntf3 (ENSSDUG00000015145)	ano2b (ENSSDUG00000015165)	pik3cg (ENSSDUG00000015284)	HBP1 (ENSSDUG00000015387)	ENSSDUG00000015429	coa6 (ENSSDUG00000015577)	slc13a4 (ENSSDUG00000015590)	zgc:162331 (ENSSDUG00000015616)	ENSSDUG00000015633	BMAL2 (ENSSDUG00000015650) #28	stk38l (ENSSDUG00000015698) #27	med21 (ENSSDUG00000015731) #24	fgfr1op2 (ENSSDUG00000015749) #22	TM7SF3 (ENSSDUG00000015776) #23	gas2l3 (ENSSDUG00000015828)	arid2 (ENSSDUG00000015858)	ENSSDUG00000015890	slc38a2 (ENSSDUG00000015919)	slc38a4 (ENSSDUG00000015970)	ENSSDUG00000016008	ANO4 (ENSSDUG00000016036)	NXPE3 (ENSSDUG00000016189)	ENSSDUG00000016229	ENSSDUG00000016250	ENSSDUG00000016267	ENSSDUG00000016291	selenoo2 (ENSSDUG00000016311)	ENSSDUG00000016330
Barramundi perch	MODERN SPECIES	256					ntf3 (ENSLCAG00010026027)	ano2b (ENSLCAG00010026061)	pik3cg (ENSLCAG00010026154)	HBP1 (ENSLCAG00010026163)	ENSLCAG00010026205	coa6 (ENSLCAG00010026261)	slc13a4 (ENSLCAG00010026263)	zgc:162331 (ENSLCAG00010026266)	BMAL2 (ENSLCAG00010026267) #28	stk38l (ENSLCAG00010026271) #27	med21 (ENSLCAG00010026284) #24	fgfr1op2 (ENSLCAG00010026289) #22	TM7SF3 (ENSLCAG00010026297) #23	gas2l3 (ENSLCAG00010026307)	arid2 (ENSLCAG00010026317)	ENSLCAG00010026333	slc38a2 (ENSLCAG00010026358)	slc38a4 (ENSLCAG00010026398)	AMIGO2 (ENSLCAG00010026426)	ANO4 (ENSLCAG00010026429)	NXPE3 (ENSLCAG00010026438)	NXPE3 (ENSLCAG00010026444)	ENSLCAG00010026447	ENSLCAG00010026448	ENSLCAG00010026449	SELENOO (ENSLCAG00010026451)	ENSLCAG00010026455
Eupercaria	ANCESTRAL SPECIES	21	ENSGT01030000234868	ENSGT00790000123099	ENSGT00950000182835.d.b	ENSGT00390000007725.A.a	ENSGT00940000179100	ENSGT00940000155840.B	ENSGT00940000156858	ENSGT00390000011239.j	ENSGT00940000155529.B	ENSGT00390000004094	ENSGT01030000234550.a.a.d.a.b	ENSGT00940000166253	ENSGT00940000160423.b #28	ENSGT00940000153544.b #27	ENSGT00390000014557 #24	ENSGT00390000018003.b #22	ENSGT00390000008702 #23	ENSGT00940000159389	ENSGT00390000016138	ENSGT00980000203435	ENSGT00950000183205.b.a.b.a.b	ENSGT00940000155486	ENSGT00940000158917	ENSGT00950000183146.a.a	ENSGT00940000158600	ENSGT00950000182866.D.d.a.c.b.a.a	ENSGT00940000164836	ENSGT01070000253760.b.b.a.a.c.b	ENSGT00390000005508.a.b	ENSGT01100000263533.b.b.b.a.b.a.b	ENSGT00940000162179.e.b.a.a.b
Tetraodontidae	ANCESTRAL SPECIES	17	ENSGT00390000011669	ENSGT01030000234868	ENSGT00790000123099	ENSGT00950000182835.d.b	ENSGT00390000007725.A.a	ENSGT00940000155840.B	ENSGT00940000156858	ENSGT00390000011239.j	ENSGT00940000155529.B	ENSGT00390000004094	ENSGT01030000234550.a.a.d.a.b	ENSGT00940000166253	ENSGT00940000160423.b #28	ENSGT00940000153544.b #27	ENSGT00390000014557 #24	ENSGT00390000018003.b #22	ENSGT00390000008702 #23	ENSGT00940000159389	ENSGT00390000016138	ENSGT00950000183205.b.a.b.a.b	ENSGT00940000155486	ENSGT00940000158917	ENSGT00950000183146.a.a	ENSGT00400000024636	ENSGT00950000182866.D.d.a.c.b.a.a	ENSGT00940000164836	ENSGT00940000156207.b.c.a.b	ENSGT00530000063540.b	ENSGT00940000153744.B	ENSGT00390000009992	ENSGT01060000248862
Fugu	MODERN SPECIES	9	nudt5 (ENSTRUG00000028442)	il15ra (ENSTRUG00000021139)	rbm17 (ENSTRUG00000010698)	pfkfb3 (ENSTRUG00000010861)	ntf3 (ENSTRUG00000011136)	ano2b (ENSTRUG00000011161)	pik3cg (ENSTRUG00000011555)	HBP1 (ENSTRUG00000011881)	ENSTRUG00000012030	coa6 (ENSTRUG00000023593)	slc13a4 (ENSTRUG00000028099)	zgc:162331 (ENSTRUG00000002933)	BMAL2 (ENSTRUG00000002984) #28	stk38l (ENSTRUG00000030601) #27	med21 (ENSTRUG00000028175) #24	fgfr1op2 (ENSTRUG00000004485) #22	TM7SF3 (ENSTRUG00000004685) #23	ENSTRUG00000033083	gas2l3 (ENSTRUG00000021510)	arid2 (ENSTRUG00000004073)	ENSTRUG00000002600	AMIGO2 (ENSTRUG00000003339)	ENSTRUG00000033473	BEST3 (ENSTRUG00000002954)	ENSTRUG00000022109	cct2 (ENSTRUG00000001566)	MYRFL (ENSTRUG00000001490)	ENSTRUG00000031123	rab21 (ENSTRUG00000029495)	ENSTRUG00000025948	KCNMB4 (ENSTRUG00000002261)
Tetraodon	MODERN SPECIES	26	ENSTNIG00000001016	ENSTNIG00000005106	ENSTNIG00000001085	ENSTNIG00000000474	maneal (ENSTNIG00000009801)	lin28ab (ENSTNIG00000009802)	pdik1l (ENSTNIG00000009803)	ENSTNIG00000000675	foxo6b (ENSTNIG00000009804)	cited4a (ENSTNIG00000009805)	ctps1a (ENSTNIG00000009806)	rab42a (ENSTNIG00000009807)	ZDHHC18 (ENSTNIG00000009808)	TMEM222 (ENSTNIG00000009809)	tpbga (ENSTNIG00000009810)	fgfr1op2 (ENSTNIG00000009811) #22	ENSTNIG00000009812 #23	SLITRK4 (ENSTNIG00000010114)	acsl1b (ENSTNIG00000010115)	ENSTNIG00000000345	st3gal5 (ENSTNIG00000001056)	POLR1A (ENSTNIG00000010116)	ptcd3 (ENSTNIG00000010117)	CNGA2 (ENSTNIG00000010118)	snx25 (ENSTNIG00000010119)	FGF4 (ENSTNIG00000010120)	fmr1 (ENSTNIG00000010121)	rab33a (ENSTNIG00000010122)	HDAC3 (ENSTNIG00000010123)	ENSTNIG00000010124	zgc:113425 (ENSTNIG00000000099)
Eupecaria_A	ANCESTRAL SPECIES	21	ENSGT01030000234868	ENSGT00790000123099	ENSGT00950000182835.d.b	ENSGT00390000007725.A.a	ENSGT00940000179100	ENSGT00940000155840.B	ENSGT00940000156858	ENSGT00390000011239.j	ENSGT00940000155529.B	ENSGT00390000004094	ENSGT01030000234550.a.a.d.a.b	ENSGT00940000166253	ENSGT00940000160423.b #28	ENSGT00940000153544.b #27	ENSGT00390000014557 #24	ENSGT00390000018003.b #22	ENSGT00390000008702 #23	ENSGT00940000159389	ENSGT00390000016138	ENSGT00980000203435	ENSGT00950000183205.b.a.b.a.b	ENSGT00940000155486	ENSGT00940000158917	ENSGT00950000183146.a.a	ENSGT00940000158600	ENSGT00950000182866.D.d.a.c.b.a.a	ENSGT00940000164836	ENSGT01070000253760.b.b.a.a.c.b	ENSGT00390000005508.a.b	ENSGT01100000263533.b.b.b.a.b.a.b	ENSGT00940000162179.e.b.a.a.b
Ballan wrasse	MODERN SPECIES	409												zgc:162331 (ENSLBEG00000025326)	BMAL2 (ENSLBEG00000025301) #28	stk38l (ENSLBEG00000025255) #27	med21 (ENSLBEG00000025229) #24	fgfr1op2 (ENSLBEG00000025213) #22	TM7SF3 (ENSLBEG00000025190) #23	gas2l3 (ENSLBEG00000025164)	arid2 (ENSLBEG00000025089)	ENSLBEG00000025033	slc38a2 (ENSLBEG00000025003)	slc38a4 (ENSLBEG00000024951)	ENSLBEG00000024919	ANO4 (ENSLBEG00000024864)	ENSLBEG00000024830
Eupecaria_B	ANCESTRAL SPECIES	21	ENSGT01030000234868	ENSGT00790000123099	ENSGT00950000182835.d.b	ENSGT00390000007725.A.a	ENSGT00940000179100	ENSGT00940000155840.B	ENSGT00940000156858	ENSGT00390000011239.j	ENSGT00940000155529.B	ENSGT00390000004094	ENSGT01030000234550.a.a.d.a.b	ENSGT00940000166253	ENSGT00940000160423.b #28	ENSGT00940000153544.b #27	ENSGT00390000014557 #24	ENSGT00390000018003.b #22	ENSGT00390000008702 #23	ENSGT00940000159389	ENSGT00390000016138	ENSGT00980000203435	ENSGT00950000183205.b.a.b.a.b	ENSGT00940000155486	ENSGT00940000158917	ENSGT00950000183146.a.a	ENSGT00940000158600	ENSGT00950000182866.D.d.a.c.b.a.a	ENSGT00940000164836	ENSGT01070000253760.b.b.a.a.c.b	ENSGT00390000005508.a.b	ENSGT00940000162179.e.b.a.a.b	ENSGT00530000063540.b
Perciformes	ANCESTRAL SPECIES	18	ENSGT01030000234868	ENSGT00790000123099	ENSGT00950000182835.d.b	ENSGT00390000007725.A.a	ENSGT00940000179100	ENSGT00940000155840.B	ENSGT00940000156858	ENSGT00390000011239.j	ENSGT00940000155529.B	ENSGT00390000004094	ENSGT01030000234550.a.a.d.a.b	ENSGT00940000166253	ENSGT00940000160423.b #28	ENSGT00940000153544.b #27	ENSGT00390000014557 #24	ENSGT00390000018003.b #22	ENSGT00390000008702 #23	ENSGT00940000159389	ENSGT00390000016138	ENSGT00980000203435	ENSGT00950000183205.b.a.b.a.b	ENSGT00940000155486	ENSGT00940000158917	ENSGT00950000183146.a.a	ENSGT00940000158600	ENSGT00530000063540.b	ENSGT00940000153744.B	ENSGT00390000009992	ENSGT00940000179382	ENSGT01100000263519.D	ENSGT01060000248677
Cottioidei	ANCESTRAL SPECIES	19	ENSGT00390000011669	ENSGT01030000234868	ENSGT00790000123099	ENSGT00950000182835.d.b	ENSGT00390000007725.A.a	ENSGT00940000155840.B	ENSGT00940000156858	ENSGT00390000011239.j	ENSGT00940000155529.B	ENSGT00390000004094	ENSGT01030000234550.a.a.d.a.b	ENSGT00940000166253	ENSGT00940000160423.b #28	ENSGT00940000153544.b #27	ENSGT00390000014557 #24	ENSGT00390000018003.b #22	ENSGT00390000008702 #23	ENSGT00940000159389	ENSGT00390000016138	ENSGT00950000183205.b.a.b.a.b	ENSGT00940000155486	ENSGT00940000158917	ENSGT00950000183146.a.a	ENSGT00940000158600	ENSGT00950000182866.D.d.a.c.b.a.a.v	ENSGT00400000024636	ENSGT00950000182866.D.d.a.c.b.a.a.u	ENSGT00530000063540.b	ENSGT00940000153744.B	ENSGT00390000009992	ENSGT00940000179382
Stickleback	MODERN SPECIES	3	csnk1a1 (ENSGACG00000019578)	FBXO38 (ENSGACG00000019572)	magt1 (ENSGACG00000019568)	igbp1 (ENSGACG00000019563)	abhd18 (ENSGACG00000019560)	rnf103 (ENSGACG00000019558)	tmem129 (ENSGACG00000019555)	atoh8 (ENSGACG00000019554)	SLITRK2 (ENSGACG00000019553)	hspa9 (ENSGACG00000019542)	rab33ba (ENSGACG00000019540)	zgc:113425 (ENSGACG00000019538)	setd7 (ENSGACG00000019534)	stk38l (ENSGACG00000019532) #27	med21 (ENSGACG00000019530) #24	fgfr1op2 (ENSGACG00000019527) #22	TM7SF3 (ENSGACG00000019525) #23	ENSGACG00000019524	arid2 (ENSGACG00000019522)	ENSGACG00000019521	slc38a2 (ENSGACG00000019520)	slc38a4 (ENSGACG00000019519)	ENSGACG00000019518	ENSGACG00000019517	NXPE3 (ENSGACG00000019515)	NXPE3 (ENSGACG00000019512)	ANO4 (ENSGACG00000019509)	NXPE3 (ENSGACG00000019508)	NXPE3 (ENSGACG00000019506)	ENSGACG00000019505	ENSGACG00000019504
Lumpfish	MODERN SPECIES	15	ENSCLMG00005022926	ENSCLMG00005022928	e2f7 (ENSCLMG00005022931)	nav3 (ENSCLMG00005022936)	ENSCLMG00005022938	ENSCLMG00005022940	ENSCLMG00005022942	si:ch211-214j24.10 (ENSCLMG00005022945)	osgep (ENSCLMG00005022950)	apex1 (ENSCLMG00005010397)	ENSCLMG00005010398	ENSCLMG00005010401	BMAL2 (ENSCLMG00005010402) #28	stk38l (ENSCLMG00005010403) #27	med21 (ENSCLMG00005010429) #24	fgfr1op2 (ENSCLMG00005010431) #22	TM7SF3 (ENSCLMG00005010433) #23	gas2l3 (ENSCLMG00005010441)	arid2 (ENSCLMG00005010467)	ENSCLMG00005012141	slc38a2 (ENSCLMG00005012143)	slc38a4 (ENSCLMG00005012155)	ENSCLMG00005014298	ANO4 (ENSCLMG00005014300)	NXPE3 (ENSCLMG00005014303)	mcm10 (ENSCLMG00005014306)	NXPE3 (ENSCLMG00005014362)	zgc:162331 (ENSCLMG00005014364)	slc13a4 (ENSCLMG00005014366)	coa6 (ENSCLMG00005014369)	ENSCLMG00005014370
Perciformes_a	ANCESTRAL SPECIES	19	ENSGT01030000234868	ENSGT00790000123099	ENSGT00950000182835.d.b	ENSGT00390000007725.A.a	ENSGT00940000179100	ENSGT00940000155840.B	ENSGT00940000156858	ENSGT00390000011239.j	ENSGT00940000155529.B	ENSGT00390000004094	ENSGT01030000234550.a.a.d.a.b	ENSGT00940000166253	ENSGT00940000160423.b #28	ENSGT00940000153544.b #27	ENSGT00390000014557 #24	ENSGT00390000018003.b #22	ENSGT00390000008702 #23	ENSGT00940000159389	ENSGT00390000016138	ENSGT00980000203435	ENSGT00950000183205.b.a.b.a.b	ENSGT00940000155486	ENSGT00940000158917	ENSGT00950000183146.a.a	ENSGT00940000158600	ENSGT00950000182866.D.d.a.c.b.a.a	ENSGT00940000164836	ENSGT01070000253760.b.b.a.a.c.b	ENSGT00390000005508.a.b	ENSGT00530000063540.b	ENSGT00940000153744.B
Pike perch	MODERN SPECIES	20	fbxo18 (ENSSLUG00000018015)	ENSSLUG00000018041	rbm17 (ENSSLUG00000018053)	pfkfb3 (ENSSLUG00000018257)	ntf3 (ENSSLUG00000021677)	ano2b (ENSSLUG00000021706)	pik3cg (ENSSLUG00000021836)	HBP1 (ENSSLUG00000022978)	PTPRZ1 (ENSSLUG00000022989)	coa6 (ENSSLUG00000023018)	slc13a4 (ENSSLUG00000023024)	zgc:162331 (ENSSLUG00000023033)	BMAL2 (ENSSLUG00000023039) #28	stk38l (ENSSLUG00000023045) #27	med21 (ENSSLUG00000023056) #24	fgfr1op2 (ENSSLUG00000023060) #22	TM7SF3 (ENSSLUG00000023063) #23	gas2l3 (ENSSLUG00000023083)	arid2 (ENSSLUG00000023098)	ENSSLUG00000023128	slc38a2 (ENSSLUG00000023182)	slc38a4 (ENSSLUG00000023732)	ENSSLUG00000023944	ANO4 (ENSSLUG00000005306)	NXPE3 (ENSSLUG00000005940)	ENSSLUG00000005949	NXPE3 (ENSSLUG00000005962)	ENSSLUG00000005973	selenoo2 (ENSSLUG00000005988)	NXPE3 (ENSSLUG00000006057)	NXPE3 (ENSSLUG00000006065)
Channel bull blenny	MODERN SPECIES	15	ENSCGOG00000019076	ENSCGOG00000019078	ENSCGOG00000019080	ntf3 (ENSCGOG00000019082)	ENSCGOG00000019083	ano2b (ENSCGOG00000019086)	ENSCGOG00000019089	ENSCGOG00000019101	ENSCGOG00000019107	slc13a4 (ENSCGOG00000019511)	coa6 (ENSCGOG00000019554)	zgc:162331 (ENSCGOG00000019555)	BMAL2 (ENSCGOG00000019558) #28	stk38l (ENSCGOG00000019571) #27	med21 (ENSCGOG00000020119) #24	fgfr1op2 (ENSCGOG00000020151) #22	TM7SF3 (ENSCGOG00000020161) #23	gas2l3 (ENSCGOG00000020180)	arid2 (ENSCGOG00000020260)	ENSCGOG00000020508	ENSCGOG00000020512	slc38a2 (ENSCGOG00000020534)	slc38a4 (ENSCGOG00000020984)	AMIGO2 (ENSCGOG00000022027)	ANO4 (ENSCGOG00000022036)	ENSCGOG00000022087	ENSCGOG00000022091	ENSCGOG00000022094	apex1 (ENSCGOG00000022098)	si:ch211-214j24.10 (ENSCGOG00000022099)	osgep (ENSCGOG00000022102)
Eupecaria_C	ANCESTRAL SPECIES	18	ENSGT00390000011669	ENSGT01030000234868	ENSGT00790000123099	ENSGT00950000182835.d.b	ENSGT00390000007725.A.a	ENSGT00940000155840.B	ENSGT00940000156858	ENSGT00390000011239.j	ENSGT00940000155529.B	ENSGT00390000004094	ENSGT01030000234550.a.a.d.a.b	ENSGT00940000166253	ENSGT00940000160423.b #28	ENSGT00940000153544.b #27	ENSGT00390000014557 #24	ENSGT00390000018003.b #22	ENSGT00390000008702 #23	ENSGT00940000159389	ENSGT00390000016138	ENSGT00950000183205.b.a.b.a.b	ENSGT00940000155486	ENSGT00940000158917	ENSGT00950000183146.a.a	ENSGT00940000158600	ENSGT00950000182866.D.d.a.c.b.a.a	ENSGT00940000164836	ENSGT01070000253760.b.b.a.a.c.b	ENSGT00390000005508.a.b	ENSGT00940000162179.e.b.a.a.b	ENSGT00530000063540.b	ENSGT00940000153744.B
Gilthead seabream	MODERN SPECIES	5	fbxo18 (ENSSAUG00010020562)	ENSSAUG00010020559	rbm17 (ENSSAUG00010020556)	pfkfb3 (ENSSAUG00010019660)	ntf3 (ENSSAUG00010019651)	ano2b (ENSSAUG00010016231)	pik3cg (ENSSAUG00010014438)	HBP1 (ENSSAUG00010014418)	ENSSAUG00010013763	COA6 (ENSSAUG00010013759)	slc13a4 (ENSSAUG00010013597)	zgc:162331 (ENSSAUG00010013595)	BMAL2 (ENSSAUG00010013586) #28	stk38l (ENSSAUG00010013202) #27	med21 (ENSSAUG00010013197) #24	fgfr1op2 (ENSSAUG00010013196) #22	TM7SF3 (ENSSAUG00010012970) #23	gas2l3 (ENSSAUG00010012954)	arid2 (ENSSAUG00010012924)	ENSSAUG00010012922	slc38a4 (ENSSAUG00010011653)	ENSSAUG00010011641	ANO4 (ENSSAUG00010011593)	NXPE3 (ENSSAUG00010011577)	NXPE3 (ENSSAUG00010011572)	NXPE3 (ENSSAUG00010011570)	ENSSAUG00010011569	ENSSAUG00010011568	selenoo2 (ENSSAUG00010011550)	ENSSAUG00010011546	apex1 (ENSSAUG00010011545)
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	34	ENSGT00390000011669	ENSGT01030000234868	ENSGT00790000123099	ENSGT00950000182835.d.b	ENSGT00390000007725.A.a	ENSGT00940000155840.B	ENSGT00940000156858	ENSGT00390000011239.j	ENSGT00940000155529.B	ENSGT00390000004094	ENSGT01030000234550.a.a.d.a.b	ENSGT00940000166253	ENSGT00940000160423.b #28	ENSGT00940000153544.b #27	ENSGT00390000014557 #24	ENSGT00390000018003.b #22	ENSGT00390000008702 #23	ENSGT00940000159389	ENSGT00390000016138	ENSGT00950000183205.b.a.b.a.b	ENSGT00940000155486	ENSGT00940000158917	ENSGT00950000183146.a.a	ENSGT00940000158600	ENSGT00950000182866.D.d.a.c.b.a.a	ENSGT00940000164836	ENSGT01070000253760.b.b.a.a.c.b	ENSGT00390000005508.a.b	ENSGT00940000162179.e.b.a.a.b	ENSGT00530000063540.b	ENSGT00940000153744.B
Large yellow croaker	MODERN SPECIES	50												zgc:162331 (ENSLCRG00005018041)	BMAL2 (ENSLCRG00005018038) #28	stk38l (ENSLCRG00005018032) #27	med21 (ENSLCRG00005018031) #24	fgfr1op2 (ENSLCRG00005018029) #22	TM7SF3 (ENSLCRG00005017918) #23	gas2l3 (ENSLCRG00005017915)	arid2 (ENSLCRG00005017914)	ENSLCRG00005017911	slc38a2 (ENSLCRG00005017315)	slc38a4 (ENSLCRG00005017236)	ENSLCRG00005017220	ANO4 (ENSLCRG00005017191)	ENSLCRG00005017189	ENSLCRG00005017188	selenoo2 (ENSLCRG00005017186)	ENSLCRG00005017185	apex1 (ENSLCRG00005017183)	osgep (ENSLCRG00005017173)	si:ch211-214j24.10 (ENSLCRG00005017171)
Tiger tail seahorse	MODERN SPECIES	407	rbm17 (ENSHCOG00000010865)	pfkfb3 (ENSHCOG00000010850)	ntf3 (ENSHCOG00000010833)	ano2b (ENSHCOG00000010810)	ENSHCOG00000010781	ENSHCOG00000010763	HBP1 (ENSHCOG00000010740)	ENSHCOG00000010728	ENSHCOG00000010717	coa6 (ENSHCOG00000010698)	slc13a4 (ENSHCOG00000010660)	zgc:162331 (ENSHCOG00000000331)	BMAL2 (ENSHCOG00000010607) #28	stk38l (ENSHCOG00000010564) #27	med21 (ENSHCOG00000010515) #24	fgfr1op2 (ENSHCOG00000010497) #22	TM7SF3 (ENSHCOG00000010491) #23	gas2l3 (ENSHCOG00000010427)	arid2 (ENSHCOG00000010380)	ENSHCOG00000010029	slc38a2 (ENSHCOG00000010019)	slc38a4 (ENSHCOG00000010009)	ENSHCOG00000009989	ENSHCOG00000009970	apex1 (ENSHCOG00000009961)	osgep (ENSHCOG00000009941)	si:ch211-214j24.10 (ENSHCOG00000009918)	ENSHCOG00000009911	ENSHCOG00000009892	hcfc2 (ENSHCOG00000009807)	nav3 (ENSHCOG00000009786)
Pinecone sodierfish	MODERN SPECIES	15	ENSMMDG00005024092	ENSMMDG00005024086	ENSMMDG00005024083	atp23 (ENSMMDG00005024080)	rpap3 (ENSMMDG00005024074)	mapk12b (ENSMMDG00005024069)	mapk11 (ENSMMDG00005024064)	slc13a4 (ENSMMDG00005024059)	zgc:162331 (ENSMMDG00005024056)	ENSMMDG00005024053	ENSMMDG00005024050	ENSMMDG00005024048	BMAL2 (ENSMMDG00005024042) #28	stk38l (ENSMMDG00005024036) #27	med21 (ENSMMDG00005024030) #24	fgfr1op2 (ENSMMDG00005024027) #22	TM7SF3 (ENSMMDG00005024025) #23	ENSMMDG00005024022	gas2l3 (ENSMMDG00005024020)	arid2 (ENSMMDG00005023798)	ENSMMDG00005023787	slc38a2 (ENSMMDG00005023780)	slc38a4 (ENSMMDG00005023776)	ENSMMDG00005023774	ANO4 (ENSMMDG00005023770)	NXPE3 (ENSMMDG00005023767)	ENSMMDG00005023765	ENSMMDG00005023764	NXPE3 (ENSMMDG00005023761)	NXPE3 (ENSMMDG00005023756)	NXPE3 (ENSMMDG00005023753)
Cod	MODERN SPECIES	17	ENSGMOG00000031287	ENSGMOG00000030658	RECQL (ENSGMOG00000010504)	golt1ba (ENSGMOG00000003486)	spx (ENSGMOG00000024578)	GYS2 (ENSGMOG00000003448)	ENSGMOG00000003433	LDHB (ENSGMOG00000016498)	slc25a3a (ENSGMOG00000001907)	ENSGMOG00000035545	ENSGMOG00000034185	ENSGMOG00000023651	ENSGMOG00000012993	STK38L (ENSGMOG00000014317) #27	MED21 (ENSGMOG00000019053) #24	ENSGMOG00000019412 #22	TM7SF3 (ENSGMOG00000019040) #23	ENSGMOG00000035994	ENSGMOG00000031567	ENSGMOG00000031018	ENSGMOG00000016013	ENSGMOG00000016007	ENSGMOG00000026292	ENSGMOG00000034412	ENSGMOG00000003625	ENSGMOG00000036179	ENSGMOG00000018688	ENSGMOG00000027333	ENSGMOG00000036980	ENSGMOG00000015862	ENSGMOG00000015883
Protacanthopterygii	ANCESTRAL SPECIES	23	ENSGT00940000159379	ENSGT00940000154479.a.a.b	ENSGT00430000031071	ENSGT00940000158940.a	ENSGT00390000007640.a	ENSGT00970000193390.c.b.b.a.l.b	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00940000158155	ENSGT00730000112347	ENSGT00940000158804	ENSGT00940000166093	ENSGT00510000049725	ENSGT00940000160423.b #28	ENSGT00940000153544.b #27	ENSGT00390000014557 #24	ENSGT00390000018003.b #22	ENSGT00390000008702 #23	ENSGT00940000159389	ENSGT00390000016138	ENSGT00950000183205.b.a.b.a.b	ENSGT00940000155486	ENSGT00940000158917	ENSGT00950000183146.a.a	ENSGT00940000158600	ENSGT00390000009277	ENSGT01100000263556.a.a.p.b.b.b.b	ENSGT00950000182839.B.a.a.k	ENSGT00910000144343	ENSGT00940000158677	ENSGT00940000155210.a.b	ENSGT00540000070023.c.b.h
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	165	ENSGT00430000031071.a	ENSGT00940000158940.a	ENSGT00390000007640.a	ENSGT00970000193390.c.b.b.a.l.b.a	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00940000155368.g.a.b	ENSGT00940000158155.f	ENSGT00730000112347.a.b	ENSGT00940000158804	ENSGT00940000166093	ENSGT00510000049725.h	ENSGT01030000234982.j.a	ENSGT00940000160423.b.b #28	ENSGT00940000153544.b.d #27	ENSGT00390000014557.hb #24	ENSGT00390000018003.b.e #22	ENSGT00390000008702 #23	ENSGT00940000159389.i	ENSGT00390000016138.u	ENSGT00950000183205.b.a.b.a.b.g	ENSGT00940000159389.j	ENSGT00390000016138.v	ENSGT00950000183205.b.a.b.a.b.h	ENSGT00940000155486	ENSGT00940000158917	ENSGT00950000183146.a.a.b	ENSGT00940000158600.n	ENSGT00390000009277.i.a.a	ENSGT00950000183146.a.a.a	ENSGT00940000158600.o	ENSGT00390000009277.i.a.b
Salmoninae_a	ANCESTRAL SPECIES	98	ENSGT00940000154479.a.a.b.c	ENSGT00430000031071.a	ENSGT00940000158940.a.g	ENSGT00390000007640.a.j	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00940000155368.g.a.b	ENSGT00940000158155.f	ENSGT00730000112347.a.b	ENSGT00940000158804.h	ENSGT00940000166093.e.b	ENSGT00510000049725.h	ENSGT01030000234982.j.a	ENSGT00940000160423.b.b #28	ENSGT00940000153544.b.d #27	ENSGT00390000014557.hb #24	ENSGT00390000018003.b.e #22	ENSGT00390000008702 #23	ENSGT00940000159389.i	ENSGT00390000016138.u	ENSGT00950000183205.b.a.b.a.b.g	ENSGT00940000159389.j	ENSGT00390000016138.v	ENSGT00950000183205.b.a.b.a.b.h	ENSGT00940000155486	ENSGT00940000158917	ENSGT00950000183146.a.a.b	ENSGT00940000158600.n	ENSGT00390000009277.i.b	ENSGT00950000183146.a.a.a	ENSGT00940000158600.o	ENSGT00390000009277.i.a.b
Salmo	ANCESTRAL SPECIES	25	ENSGT00940000158940.a.g	ENSGT00390000007640.a.i.a	ENSGT00970000193390.c.b.b.a.l.b.b	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00940000155368.g.a.b	ENSGT00940000158155.f	ENSGT00730000112347.a.b	ENSGT00940000158804.h	ENSGT00940000166093.e.b	ENSGT00510000049725.h	ENSGT01030000234982.j.a	ENSGT00940000154649.A.q	ENSGT00940000160423.b.b #28	ENSGT00940000153544.b.d #27	ENSGT00390000014557.hb #24	ENSGT00390000018003.b.e #22	ENSGT00390000008702.p #23	ENSGT00940000159389.j	ENSGT00390000016138.v	ENSGT00950000183205.b.a.b.a.b.h	ENSGT00940000155486	ENSGT00940000158917.l	ENSGT00940000158600.o	ENSGT00390000009277.i.a.b	ENSGT00390000009277.j.a	ENSGT01100000263556.a.a.p.b.b.b.b	ENSGT00950000182839.B.a.a.k.c	ENSGT01090000260059.b.c	ENSGT00940000158677.e	ENSGT00940000155210.a.b.d.b	ENSGT00540000070023.c.b.h.a
Atlantic salmon	MODERN SPECIES	26	cd36 (ENSSSAG00000005358)	ENSSSAG00000108697	mtpn (ENSSSAG00000009664)	chrm2a (ENSSSAG00000101781)	ptn (ENSSSAG00000009681)	ENSSSAG00000009694	ENSSSAG00000009697	ENSSSAG00000009705	ENSSSAG00000009733	ENSSSAG00000008362	ENSSSAG00000009815	ENSSSAG00000009898	ENSSSAG00000009909	BMAL2 (ENSSSAG00000009920) #28	ENSSSAG00000008457 #27	ENSSSAG00000010001 #22	MED21 (ENSSSAG00000009983) #24	ENSSSAG00000010011 #23	ENSSSAG00000010105	ENSSSAG00000010188	ENSSSAG00000015784	slc38a2 (ENSSSAG00000015905)	slc38a4 (ENSSSAG00000096362)	ENSSSAG00000027979	ENSSSAG00000083621	ENSSSAG00000109306	ENSSSAG00000089985	ENSSSAG00000085670	ENSSSAG00000029748	ENSSSAG00000083027	ENSSSAG00000030379
River trout	MODERN SPECIES	38	chrm2a (ENSSTUG00000037389)	ptn (ENSSTUG00000037413)	ENSSTUG00000037439	ENSSTUG00000037449	ENSSTUG00000037454	TULP3 (ENSSTUG00000037473)	rhno1 (ENSSTUG00000037534)	foxm1 (ENSSTUG00000037546)	ENSSTUG00000037560	pex26 (ENSSTUG00000037623)	ENSSTUG00000037632	ENSSTUG00000037639	BMAL2 (ENSSTUG00000037660) #28	stk38l (ENSSTUG00000037696) #27	med21 (ENSSTUG00000037721) #24	fgfr1op2 (ENSSTUG00000037750) #22	TM7SF3 (ENSSTUG00000037770) #23	gas2l3 (ENSSTUG00000037927)	arid2 (ENSSTUG00000037995)	ENSSTUG00000039684	slc38a4 (ENSSTUG00000039743)	ANO4 (ENSSTUG00000040843)	ENSSTUG00000042060	ENSSTUG00000042145	rassf8b (ENSSTUG00000042416)	ENSSTUG00000042463	pkp2 (ENSSTUG00000042487)	nudt4b (ENSSTUG00000042509)	ube2nb (ENSSTUG00000042550)	mrpl42 (ENSSTUG00000042602)	ENSSTUG00000042627
Oncorhynchus	ANCESTRAL SPECIES	9	ENSGT00940000154479.a.a.b.c.a	ENSGT00430000031071.a	ENSGT00940000158940.a.g	ENSGT00390000007640.a.j	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00940000155368.g.a.b	ENSGT00940000158155.f	ENSGT00730000112347.a.b	ENSGT00940000158804.h	ENSGT00940000166093.e.b	ENSGT00510000049725.h	ENSGT00940000154649.A.r.a.c.a	ENSGT00940000160423.b.b #28	ENSGT00940000153544.b.c.a #27	ENSGT00390000014557.hb #24	ENSGT00390000018003.b.e #22	ENSGT00390000008702.n #23	ENSGT00940000159389.j	ENSGT00390000016138.v	ENSGT00950000183205.b.a.b.a.b.h	ENSGT00940000155486	ENSGT00940000158917.i	ENSGT00950000183146.a.a.a	ENSGT00940000158600.o.b	ENSGT00990000210244	ENSGT00940000154308.A.b.a.a.a.b	ENSGT00950000182839.B.a.a.k.d	ENSGT00910000144343	ENSGT01090000260059.b.c	ENSGT00390000009277.j.b	ENSGT01100000263556.a.a.p.b.b.b.b
Rainbow trout	MODERN SPECIES	13	ENSOMYG00000016238	ENSOMYG00000064794	mtpn (ENSOMYG00000016220)	chrm2a (ENSOMYG00000016204)	ptn (ENSOMYG00000016183)	ENSOMYG00000016173	ENSOMYG00000016139	rhno1 (ENSOMYG00000016132)	ENSOMYG00000016124	ENSOMYG00000016050	ENSOMYG00000016032	ENSOMYG00000016023	BMAL2 (ENSOMYG00000015998) #28	ENSOMYG00000015894 #27	med21 (ENSOMYG00000015875) #24	ENSOMYG00000015853 #22	ENSOMYG00000015238 #23	ENSOMYG00000015145	ENSOMYG00000013411	ENSOMYG00000013113	ENSOMYG00000009878	ENSOMYG00000013108	slc38a2 (ENSOMYG00000012869)	slc38a4 (ENSOMYG00000067871)	ENSOMYG00000072297	ENSOMYG00000011696	nmes1 (ENSOMYG00000011602)	ENSOMYG00000049116	ENSOMYG00000011550	ENSOMYG00000011537	ENSOMYG00000070218
Oncorhynchus_a	ANCESTRAL SPECIES	64	ENSGT00940000154479.a.a.b.c.a	ENSGT00430000031071.a	ENSGT00940000158940.a.g	ENSGT00390000007640.a.j	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00940000155368.g.a.b	ENSGT00940000158155.f	ENSGT00730000112347.a.b	ENSGT00940000158804.h	ENSGT00940000166093.e.b	ENSGT00510000049725.h	ENSGT00940000154649.A.r.a.c.a	ENSGT00940000160423.b.b #28	ENSGT00940000153544.b.c.a #27	ENSGT00390000014557.hb #24	ENSGT00390000018003.b.e #22	ENSGT00390000008702.n #23	ENSGT00940000159389.j	ENSGT00390000016138.v	ENSGT00950000183205.b.a.b.a.b.h	ENSGT00940000155486	ENSGT00940000158917.i	ENSGT00950000183146.a.a.a	ENSGT00940000158600.o.a	ENSGT00940000158600.o.b	ENSGT00950000182839.B.a.a.k.c	ENSGT01090000260059.b.c.a	ENSGT00940000158677.e	ENSGT00940000155210.a.b.d.a	ENSGT00940000155210.a.b.d.b	ENSGT00540000070023.c.b.h.a
Coho salmon	MODERN SPECIES	29	ENSOKIG00005004412	ENSOKIG00005004176	mtpn (ENSOKIG00005004169)	chrm2a (ENSOKIG00005004159)	ptn (ENSOKIG00005004141)	ENSOKIG00005004126	ENSOKIG00005004100	rhno1 (ENSOKIG00005004085)	FOXM1 (ENSOKIG00005004071)	ENSOKIG00005004048	pex26 (ENSOKIG00005004017)	ENSOKIG00005004007	BMAL2 (ENSOKIG00005003985) #28	STK38L (ENSOKIG00005003926) #27	med21 (ENSOKIG00005003909) #24	FGFR1OP2 (ENSOKIG00005003901) #22	TM7SF3 (ENSOKIG00005003867) #23	gas2l3 (ENSOKIG00005003841)	ARID2 (ENSOKIG00005003489)	ENSOKIG00005003394	slc38a2 (ENSOKIG00005003285)	ENSOKIG00005003255	ANO4 (ENSOKIG00005002801)	ENSOKIG00005002711	ENSOKIG00005002705	ENSOKIG00005002698	RASSF8 (ENSOKIG00005002686)	pkp2 (ENSOKIG00005002644)	nudt4b (ENSOKIG00005002619)	ube2nb (ENSOKIG00005002603)	mrpl42 (ENSOKIG00005002596)
Chinook salmon	DUPLICATION
Chinook salmon	MODERN SPECIES	4	SEMA3C (ENSOTSG00005033114)	ENSOTSG00005033106	mtpn (ENSOTSG00005033104)	ptn (ENSOTSG00005033101)	ENSOTSG00005033075	ENSOTSG00005033074	ENSOTSG00005040084	rhno1 (ENSOTSG00005040082)	foxm1 (ENSOTSG00005040081)	ENSOTSG00005040080	ENSOTSG00005040078	ENSOTSG00005040077	BMAL2 (ENSOTSG00005040071) #28	stk38l (ENSOTSG00005039773) #27	med21 (ENSOTSG00005039771) #24	fgfr1op2 (ENSOTSG00005039769) #22	TM7SF3 (ENSOTSG00005039764) #23	gas2l3 (ENSOTSG00005039762)	arid2 (ENSOTSG00005039481)	ENSOTSG00005039475	ENSOTSG00005039432	slc38a4 (ENSOTSG00005037788)	ENSOTSG00005037773	ANO4 (ENSOTSG00005037751)	ENSOTSG00005037749	rassf8b (ENSOTSG00005037747)	ENSOTSG00005037745	pkp2 (ENSOTSG00005037743)	nudt4b (ENSOTSG00005037740)	ube2nb (ENSOTSG00005037603)	ENSOTSG00005037591
Chinook salmon	MODERN SPECIES	3	SEMA3C (ENSOTSG00005047119)	ENSOTSG00005047110	mtpn (ENSOTSG00005047109)	ptn (ENSOTSG00005047108)	ENSOTSG00005047106	ENSOTSG00005047105	ENSOTSG00005047102	rhno1 (ENSOTSG00005047100)	foxm1 (ENSOTSG00005047099)	ENSOTSG00005047097	ENSOTSG00005047094	ENSOTSG00005047093	BMAL2 (ENSOTSG00005047092) #28	stk38l (ENSOTSG00005047091) #27	med21 (ENSOTSG00005047090) #24	fgfr1op2 (ENSOTSG00005047089) #22	TM7SF3 (ENSOTSG00005047088) #23	gas2l3 (ENSOTSG00005047087)	arid2 (ENSOTSG00005047073)	ENSOTSG00005047070	slc38a4 (ENSOTSG00005047047)	ENSOTSG00005047046	ANO4 (ENSOTSG00005047045)	ENSOTSG00005047043	ENSOTSG00005047042	rassf8b (ENSOTSG00005047040)	ENSOTSG00005047038	pkp2 (ENSOTSG00005047037)	nudt4b (ENSOTSG00005047036)	ube2nb (ENSOTSG00005047035)	mrpl42 (ENSOTSG00005047034)
Huchen	MODERN SPECIES	1230					ENSHHUG00000009362	ENSHHUG00000009376	ENSHHUG00000009388	rhno1 (ENSHHUG00000009406)	foxm1 (ENSHHUG00000009414)	ENSHHUG00000009459	pex26 (ENSHHUG00000009668)	ENSHHUG00000009681	BMAL2 (ENSHHUG00000009687) #28	stk38l (ENSHHUG00000009713) #27	med21 (ENSHHUG00000009800) #24	fgfr1op2 (ENSHHUG00000009830) #22	TM7SF3 (ENSHHUG00000009888) #23	ENSHHUG00000009906	arid2 (ENSHHUG00000009925)	ENSHHUG00000009977	slc38a2 (ENSHHUG00000010009)	ENSHHUG00000010055
Salmoninae	ANCESTRAL SPECIES	847									ENSGT00940000155368.g.a.a	ENSGT00940000158155.e	ENSGT00730000112347.a.a	ENSGT00510000049725.g	ENSGT00940000160423.b.a #28	ENSGT00940000153544.b.c #27	ENSGT00390000014557.ib #24	ENSGT00390000018003.b.f #22
Huchen	MODERN SPECIES	38	chrm2a (ENSHHUG00000023531)	ENSHHUG00000023529	ptn (ENSHHUG00000023511)	ENSHHUG00000023508	ENSHHUG00000023494	ENSHHUG00000023485	ENSHHUG00000023477	TULP3 (ENSHHUG00000023463)	rhno1 (ENSHHUG00000023461)	foxm1 (ENSHHUG00000023453)	ENSHHUG00000023353	ENSHHUG00000023330	BMAL2 (ENSHHUG00000023304) #28	stk38l (ENSHHUG00000023293) #27	med21 (ENSHHUG00000023202) #24	fgfr1op2 (ENSHHUG00000023192) #22	TM7SF3 (ENSHHUG00000023180) #23	gas2l3 (ENSHHUG00000023177)	arid2 (ENSHHUG00000023120)	ENSHHUG00000023109	slc38a2 (ENSHHUG00000023065)	slc38a4 (ENSHHUG00000023033)	AMIGO2 (ENSHHUG00000023023)	ANO4 (ENSHHUG00000022832)	zgc:153317 (ENSHHUG00000022829)	rassf8b (ENSHHUG00000022824)	ENSHHUG00000022822	ENSHHUG00000022819	ENSHHUG00000022809	pkp2 (ENSHHUG00000022794)	nudt4b (ENSHHUG00000022791)
Salmoninae_a	ANCESTRAL SPECIES	189						ENSGT00940000155368.g.a.a	ENSGT00940000158155.e	ENSGT00730000112347.a.a	ENSGT00940000158804.g	ENSGT00940000166093.e.a	ENSGT00940000166093.f	ENSGT00510000049725.g	ENSGT00940000160423.b.a #28	ENSGT00940000153544.b.c #27	ENSGT00390000014557.ib #24	ENSGT00390000018003.b.f #22
Salmo	ANCESTRAL SPECIES	81	ENSGT00940000159379.b	ENSGT00940000154479.a.a.b.d.a	ENSGT00430000031071.b	ENSGT00940000158940.a.h	ENSGT00390000007640.a.i.b	ENSGT00970000193390.c.b.b.a.l.b.a	ENSGT00940000155368.g.a.a	ENSGT00940000158155.e	ENSGT00730000112347.a.a	ENSGT00940000158804.g	ENSGT00940000166093.e.a	ENSGT00510000049725.g	ENSGT00940000160423.b.a #28	ENSGT00940000153544.b.c #27	ENSGT00390000014557.ib #24	ENSGT00390000018003.b.f #22	ENSGT00390000008702.o #23	ENSGT00940000159389.i	ENSGT00390000016138.u	ENSGT00950000183205.b.a.b.a.b.g	ENSGT00940000158917.k	ENSGT00950000183146.a.a.b	ENSGT00940000158600.n	ENSGT00390000009277.i.a.a	ENSGT00990000210244	ENSGT00940000154308.A.b.a.a.a.b	ENSGT00950000182839.B.a.a.k.d	ENSGT00910000144343	ENSGT01090000260059.b.d	ENSGT00940000158677.f	ENSGT00940000155210.a.b.c
River trout	MODERN SPECIES	34	ENSSTUG00000022553	mtpn (ENSSTUG00000022545)	chrm2a (ENSSTUG00000022540)	ptn (ENSSTUG00000022530)	ENSSTUG00000022523	ENSSTUG00000022514	ENSSTUG00000022502	ENSSTUG00000022470	rhno1 (ENSSTUG00000022461)	foxm1 (ENSSTUG00000022450)	ENSSTUG00000022446	pex26 (ENSSTUG00000022434)	BMAL2 (ENSSTUG00000022406) #28	stk38l (ENSSTUG00000022372) #27	med21 (ENSSTUG00000022340) #24	fgfr1op2 (ENSSTUG00000022314) #22	TM7SF3 (ENSSTUG00000022048) #23	gas2l3 (ENSSTUG00000022015)	arid2 (ENSSTUG00000021087)	ENSSTUG00000045696	slc38a4 (ENSSTUG00000045280)	ENSSTUG00000045257	ANO4 (ENSSTUG00000044666)	ENSSTUG00000044623	ENSSTUG00000044610	ENSSTUG00000044583	rassf8b (ENSSTUG00000044575)	ENSSTUG00000044563	ENSSTUG00000044550	pkp2 (ENSSTUG00000044505)	nudt4b (ENSSTUG00000044503)
Atlantic salmon	MODERN SPECIES	8	mtpn (ENSSSAG00000113526)	chrm2a (ENSSSAG00000104247)	ptn (ENSSSAG00000008321)	ENSSSAG00000095747	ENSSSAG00000008335	ENSSSAG00000008343	ENSSSAG00000108077	ENSSSAG00000009795	rhno1 (ENSSSAG00000008356)	ENSSSAG00000008368	ENSSSAG00000008386	ENSSSAG00000113536	ENSSSAG00000118383	BMAL2 (ENSSSAG00000008440) #28	ENSSSAG00000009958 #27	ENSSSAG00000008575 #22	MED21 (ENSSSAG00000008564) #24	ENSSSAG00000008590 #23	ENSSSAG00000008608	ENSSSAG00000008725	ENSSSAG00000121844	slc38a2 (ENSSSAG00000015864)	ENSSSAG00000117611	AMIGO2 (ENSSSAG00000017232)	ENSSSAG00000017632	ENSSSAG00000030104	ENSSSAG00000106297	ENSSSAG00000111050	ENSSSAG00000113200	ENSSSAG00000030354	ENSSSAG00000030631
Oncorhynchus	ANCESTRAL SPECIES	109	ENSGT00430000031071.b	ENSGT00940000158940.a.h	ENSGT00390000007640.a.i	ENSGT00970000193390.c.b.b.a.l.b.a	ENSGT00970000193390.c.b.b.b.a.v	ENSGT00940000155368.g.a.a	ENSGT00940000158155.e	ENSGT00730000112347.b	ENSGT00940000158804.g	ENSGT00940000166093.e.a	ENSGT01000000220187	ENSGT00940000154649.A.q	ENSGT00940000160423.b.a #28	ENSGT00940000153544.b.c.b #27	ENSGT00390000014557.ib #24	ENSGT00390000018003.b.f #22	ENSGT00390000008702.m #23	ENSGT00940000159389.i	ENSGT00390000016138.u	ENSGT00950000183205.b.a.b.a.b.g	ENSGT00940000158917.j	ENSGT00950000183146.a.a.b	ENSGT00940000158600.n	ENSGT00390000009277.i.b
Oncorhynchus_a	ANCESTRAL SPECIES	110								ENSGT00940000159379.a.a	ENSGT00940000154479.a.a.b.c.b	ENSGT00430000031071.b	ENSGT00940000158940.a.h	ENSGT00390000007640.a.i	ENSGT00940000160423.b.a #28	ENSGT00940000153544.b.c.b #27	ENSGT00390000014557.ib #24	ENSGT00390000018003.b.f #22	ENSGT00390000008702.m #23	ENSGT00940000159389.i	ENSGT00390000016138.u	ENSGT00950000183205.b.a.b.a.b.g	ENSGT00940000158917.j	ENSGT00950000183146.a.a.b	ENSGT00940000158600.n	ENSGT00390000009277.i.b	ENSGT00390000009277.j.b	ENSGT01100000263556.a.a.p.b.b.b.b	ENSGT00950000182839.B.a.a.k.d	ENSGT00910000144343	ENSGT01090000260059.b.c.b	ENSGT00940000158677.f	ENSGT00940000155210.a.b.c
Chinook salmon	DUPLICATION
Chinook salmon	MODERN SPECIES	8	mtpn (ENSOTSG00005034171)	chrm2a (ENSOTSG00005034173)	ptn (ENSOTSG00005034174)	ENSOTSG00005034178	ENSOTSG00005034179	ENSOTSG00005034181	ENSOTSG00005034182	rhno1 (ENSOTSG00005034183)	foxm1 (ENSOTSG00005034185)	ENSOTSG00005034187	ENSOTSG00005034304	ENSOTSG00005034305	BMAL2 (ENSOTSG00005034307) #28	stk38l (ENSOTSG00005034308) #27	med21 (ENSOTSG00005034309) #24	fgfr1op2 (ENSOTSG00005034310) #22	ENSOTSG00005034311	TM7SF3 (ENSOTSG00005034312) #23	gas2l3 (ENSOTSG00005034313)	arid2 (ENSOTSG00005034314)	ENSOTSG00005034470	slc38a2 (ENSOTSG00005034477)	slc38a4 (ENSOTSG00005034750)	ENSOTSG00005034914	ANO4 (ENSOTSG00005034935)	ENSOTSG00005037040	ENSOTSG00005037041	ENSOTSG00005037043	rassf8b (ENSOTSG00005037044)	pkp2 (ENSOTSG00005037045)	nudt4b (ENSOTSG00005037046)
Chinook salmon	MODERN SPECIES	62				ENSOTSG00005041378	ENSOTSG00005041380	ENSOTSG00005041383	ENSOTSG00005041389	rhno1 (ENSOTSG00005041392)	foxm1 (ENSOTSG00005041393)	ENSOTSG00005041396	ENSOTSG00005041457	ENSOTSG00005008578	BMAL2 (ENSOTSG00005008581) #28	stk38l (ENSOTSG00005008584) #27	med21 (ENSOTSG00005008587) #24	fgfr1op2 (ENSOTSG00005008588) #22	ENSOTSG00005008589	TM7SF3 (ENSOTSG00005008590) #23	gas2l3 (ENSOTSG00005008592)	arid2 (ENSOTSG00005008596)	ENSOTSG00005008617	slc38a4 (ENSOTSG00005008619)	ENSOTSG00005008838	ANO4 (ENSOTSG00005008849)	ENSOTSG00005011565	ENSOTSG00005011566	ENSOTSG00005011568	rassf8b (ENSOTSG00005011572)	ENSOTSG00005011573	ENSOTSG00005011574	pkp2 (ENSOTSG00005011575)
Coho salmon	MODERN SPECIES	10	SEMA3C (ENSOKIG00005034916)	ENSOKIG00005034801	mtpn (ENSOKIG00005011833)	chrm2a (ENSOKIG00005011822)	ptn (ENSOKIG00005011794)	ENSOKIG00005011776	ENSOKIG00005011771	ENSOKIG00005011760	TULP3 (ENSOKIG00005011733)	ENSOKIG00005011718	foxm1 (ENSOKIG00005011707)	ENSOKIG00005011588	BMAL2 (ENSOKIG00005011496) #28	stk38l (ENSOKIG00005011464) #27	MED21 (ENSOKIG00005011449) #24	fgfr1op2 (ENSOKIG00005011436) #22	TM7SF3 (ENSOKIG00005011357) #23	ENSOKIG00005011342	arid2 (ENSOKIG00005011292)	ENSOKIG00005011265	slc38a4 (ENSOKIG00005010945)	ENSOKIG00005010903	ANO4 (ENSOKIG00005009523)	ENSOKIG00005009444	ENSOKIG00005009438	ENSOKIG00005009424	rassf8b (ENSOKIG00005009414)	ENSOKIG00005009394	ENSOKIG00005009383	ENSOKIG00005009310	nudt4b (ENSOKIG00005009290)
Rainbow trout	MODERN SPECIES	6	ptn (ENSOMYG00000014382)	ENSOMYG00000022649	ENSOMYG00000014421	ENSOMYG00000014429	ENSOMYG00000014432	ENSOMYG00000014455	ENSOMYG00000014489	ENSOMYG00000014499	ENSOMYG00000014517	ENSOMYG00000014662	ENSOMYG00000075769	ENSOMYG00000059406	BMAL2 (ENSOMYG00000014718) #28	ENSOMYG00000014751 #27	MED21 (ENSOMYG00000014773) #24	ENSOMYG00000014785 #22	ENSOMYG00000014820 #23	gas2l3 (ENSOMYG00000064984)	ENSOMYG00000014886	ENSOMYG00000014930	SLC38A4 (ENSOMYG00000015017)	ENSOMYG00000015403	ENSOMYG00000015598	ENSOMYG00000016819	ENSOMYG00000063506	ENSOMYG00000055320	ENSOMYG00000072594	ENSOMYG00000032306	ENSOMYG00000032322	ENSOMYG00000032345	ENSOMYG00000032372
Northern pike	MODERN SPECIES	22	ENSELUG00000001038	cd36 (ENSELUG00000002160)	SEMA3C (ENSELUG00000002145)	fam180a (ENSELUG00000002136)	chrm2a (ENSELUG00000002126)	ptn (ENSELUG00000002124)	ENSELUG00000002119	TULP3 (ENSELUG00000002115)	rhno1 (ENSELUG00000002106)	foxm1 (ENSELUG00000002105)	ENSELUG00000002102	pex26 (ENSELUG00000002098)	BMAL2 (ENSELUG00000002091) #28	stk38l (ENSELUG00000002081) #27	med21 (ENSELUG00000031515) #24	fgfr1op2 (ENSELUG00000002072) #22	TM7SF3 (ENSELUG00000002067) #23	gas2l3 (ENSELUG00000002063)	arid2 (ENSELUG00000002052)	ENSELUG00000002038	slc38a4 (ENSELUG00000002032)	ENSELUG00000002017	ANO4 (ENSELUG00000002013)	zgc:153317 (ENSELUG00000001998)	ENSELUG00000001991	rassf8b (ENSELUG00000001993)	pkp2 (ENSELUG00000001987)	nudt4b (ENSELUG00000024988)	ube2nb (ENSELUG00000025006)	mrpl42 (ENSELUG00000001973)	ENSELUG00000001969
Spotted gar	MODERN SPECIES	674	pmch (ENSLOCG00000015178)	igf1 (ENSLOCG00000015180)	dram1 (ENSLOCG00000015183)	gnptab (ENSLOCG00000015184)	chpt1 (ENSLOCG00000015186)	mybpc1 (ENSLOCG00000015188)	ENSLOCG00000017893	spic (ENSLOCG00000015193)	arl1 (ENSLOCG00000015195)	UTP20 (ENSLOCG00000015197)	SLC5A8 (ENSLOCG00000015201)	ANO4 (ENSLOCG00000015202)	GAS2L3 (ENSLOCG00000015204)	nr1h4 (ENSLOCG00000015206)	slc17a8 (ENSLOCG00000015210)	fgfr1op2 (ENSLOCG00000015212) #22	TM7SF3 (ENSLOCG00000015214) #23	ENSLOCG00000015216	stk38l (ENSLOCG00000015219) #27	arntl2 (ENSLOCG00000015224) #28	ENSLOCG00000015230	si:ch211-245j22.3 (ENSLOCG00000015234)	syt10 (ENSLOCG00000015235)	ppfibp1b (ENSLOCG00000015237) ##30	REP15 (ENSLOCG00000017894) #31	cyb5r3 (ENSLOCG00000015246)	si:dkey-222f8.3 (ENSLOCG00000015248)	POLR3B (ENSLOCG00000015249)	rfx4 (ENSLOCG00000015258)	ric8b (ENSLOCG00000015262)	ENSLOCG00000015265
Reedfish	MODERN SPECIES		washc3 (ENSECRG00000005692)	dram1 (ENSECRG00000005683)	gnptab (ENSECRG00000005649)	chpt1 (ENSECRG00000005630)	mybpc1 (ENSECRG00000005173)	spic (ENSECRG00000005061)	arl1 (ENSECRG00000005016)	UTP20 (ENSECRG00000004980)	ENSECRG00000004958	SLC5A8 (ENSECRG00000004938)	ANO4 (ENSECRG00000004910)	ENSECRG00000004896	GAS2L3 (ENSECRG00000004881)	nr1h4 (ENSECRG00000004858)	slc17a8 (ENSECRG00000004827)	fgfr1op2 (ENSECRG00000006300) #22	TM7SF3 (ENSECRG00000006285) #23	ENSECRG00000006270	med21 (ENSECRG00000006263) #24	stk38l (ENSECRG00000006253) #27	ENSECRG00000006236	si:ch211-245j22.3 (ENSECRG00000006217)	syt10 (ENSECRG00000006205)	ENSECRG00000006194	ppfibp1b (ENSECRG00000006162) ##30	REP15 (ENSECRG00000006151) #31	cyb5r3 (ENSECRG00000006143)	endouc (ENSECRG00000006132)	POLR3B (ENSECRG00000006087)	rfx4 (ENSECRG00000006058)	ric8b (ENSECRG00000006043)