Chordata	ANCESTRAL SPECIES																	ENSGT00940000153676.b #22
Vertebrata	ANCESTRAL SPECIES																	ENSGT00940000153676.b #22
Gnathostomata	ANCESTRAL SPECIES	574												ENSGT00950000183202.b #15	ENSGT00940000158925 #17	ENSGT00940000159319 #19	ENSGT01100000263484.C.a #20	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23
Euteleostomi	ANCESTRAL SPECIES	432									ENSGT00950000183202.b #15	ENSGT01100000263536.A.b ##18	ENSGT01040000240444.A.a.a.a.a #16	ENSGT00940000158925 #17	ENSGT01100000263536.B.c.a #18	ENSGT00940000159319 #19	ENSGT01100000263484.C.a #20	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23
Sarcopterygii	ANCESTRAL SPECIES	11	ENSGT00940000160585 #7	ENSGT00940000159528 #8	ENSGT01040000240539	ENSGT00390000011864 #9	ENSGT01050000244937.a.a #10	ENSGT00390000010170.a.b #11	ENSGT00390000003338 #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #14	ENSGT00950000183202.b #15	ENSGT01040000240444.A.a.a.a.a #16	ENSGT00940000158925 #17	ENSGT01100000263536.B.c.a #18	ENSGT00940000159319 #19	ENSGT01100000263484.C.a #20	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #25	ENSGT00950000182865.b.a.b.b.b.a #26	ENSGT00940000155814 #27	ENSGT00940000162731 #28	ENSGT00530000063715.b #29	ENSGT01050000244891.C.c.b #30	ENSGT00390000011048 #31	ENSGT00940000159715 #32	ENSGT00390000011439 #35	ENSGT00940000162114	ENSGT00390000003838	ENSGT00590000083134.a.a #36	ENSGT00940000160941 #37	ENSGT00390000016655.a.a.b
Tetrapoda	ANCESTRAL SPECIES		ENSGT00940000160585 #7	ENSGT00940000159528 #8	ENSGT01040000240539	ENSGT00390000011864 #9	ENSGT01050000244937.a.a #10	ENSGT00390000010170.a.b #11	ENSGT00390000003338 #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #14	ENSGT00950000183202.b #15	ENSGT01040000240444.A.a.a.a.a #16	ENSGT00940000158925 #17	ENSGT01100000263536.B.c.a #18	ENSGT00940000159319 #19	ENSGT01100000263484.C.a #20	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #25	ENSGT00950000182865.b.a.b.b.b.a #26	ENSGT00940000155814 #27	ENSGT00940000162731 #28	ENSGT00530000063715.b #29	ENSGT01050000244891.C.c.b #30	ENSGT00390000011048 #31	ENSGT00940000159715 #32	ENSGT00940000161898	ENSGT00390000011737 #34	ENSGT00390000011439 #35	ENSGT00940000162114	ENSGT00390000003838	ENSGT00590000083134.a.a #36
Amniota	ANCESTRAL SPECIES		ENSGT00940000160585 #7	ENSGT00940000159528 #8	ENSGT01040000240539	ENSGT00390000011864 #9	ENSGT01050000244937.a.a #10	ENSGT00390000010170.a.b #11	ENSGT00390000003338 #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #14	ENSGT00950000183202.b #15	ENSGT01040000240444.A.a.a.a.a #16	ENSGT00940000158925 #17	ENSGT01100000263536.B.c.a #18	ENSGT00940000159319 #19	ENSGT01100000263484.C.a #20	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #25	ENSGT00950000182865.b.a.b.b.b.a #26	ENSGT00940000155814 #27	ENSGT00940000162731 #28	ENSGT00530000063715.b #29	ENSGT01050000244891.C.c.b #30	ENSGT00390000011048 #31	ENSGT00940000159715 #32	ENSGT00940000161898	ENSGT00390000011737 #34	ENSGT00390000011439 #35	ENSGT00940000162114	ENSGT00390000003838	ENSGT00590000083134.a.a #36
Mammalia	ANCESTRAL SPECIES		ENSGT00940000173288	ENSGT00940000160585 #7	ENSGT00940000159528 #8	ENSGT00390000011864 #9	ENSGT01050000244937.a.a #10	ENSGT00390000010170.a.b #11	ENSGT00390000003338 #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #14	ENSGT00950000183202.b #15	ENSGT01040000240444.A.a.a.a.a #16	ENSGT00940000158925 #17	ENSGT01100000263536.B.c.a #18	ENSGT00940000159319 #19	ENSGT01100000263484.C.a #20	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #25	ENSGT00950000182865.b.a.b.b.b.a #26	ENSGT00940000155814 #27	ENSGT00940000162731 #28	ENSGT00530000063715.b #29	ENSGT01050000244891.C.c.b #30	ENSGT00390000011048 #31	ENSGT00940000159715 #32	ENSGT00940000161898	ENSGT00390000011737 #34	ENSGT00390000011439 #35	ENSGT00940000162114	ENSGT00390000003838	ENSGT00590000083134.a.a #36
Theria	ANCESTRAL SPECIES	1	ENSGT00940000173288	ENSGT00940000160585 #7	ENSGT00940000159528 #8	ENSGT00390000011864 #9	ENSGT01050000244937.a.a #10	ENSGT00390000010170.a.b #11	ENSGT00390000003338 #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #14	ENSGT00950000183202.b #15	ENSGT01040000240444.A.a.a.a.a #16	ENSGT00940000158925 #17	ENSGT01100000263536.B.c.a #18	ENSGT00940000159319 #19	ENSGT01100000263484.C.a #20	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #25	ENSGT00950000182865.b.a.b.b.b.a #26	ENSGT00940000155814 #27	ENSGT00940000162731 #28	ENSGT00530000063715.b #29	ENSGT01050000244891.C.c.b #30	ENSGT00390000011048 #31	ENSGT00940000159715 #32	ENSGT00940000161898	ENSGT00390000011737 #34	ENSGT00390000011439 #35	ENSGT00940000162114	ENSGT00390000003838	ENSGT00590000083134.a.a #36
Eutheria	ANCESTRAL SPECIES	17	ENSGT00710000106860	ENSGT00940000160585 #7	ENSGT00940000159528 #8	ENSGT00390000011864 #9	ENSGT01050000244937.a.a #10	ENSGT00390000010170.a.b #11	ENSGT00390000003338 #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #14	ENSGT00950000183202.b #15	ENSGT01040000240444.A.a.a.a.a #16	ENSGT00940000158925 #17	ENSGT01100000263536.B.c.a #18	ENSGT00940000159319 #19	ENSGT01100000263484.C.a #20	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #25	ENSGT00950000182865.b.a.b.b.b.a #26	ENSGT00940000155814 #27	ENSGT00940000162731 #28	ENSGT00530000063715.b #29	ENSGT01050000244891.C.c.b #30	ENSGT00390000011048 #31	ENSGT00940000159715 #32	ENSGT00940000161898	ENSGT00390000011737 #34	ENSGT00390000011439 #35	ENSGT00940000162114	ENSGT00390000003838	ENSGT00590000083134.a.a #36
Boreoeutheria	ANCESTRAL SPECIES	21	ENSGT00710000106860	ENSGT00940000160585 #7	ENSGT00940000159528 #8	ENSGT00390000011864 #9	ENSGT01050000244937.a.a #10	ENSGT00390000010170.a.b #11	ENSGT00390000003338 #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #14	ENSGT00950000183202.b #15	ENSGT01040000240444.A.a.a.a.a #16	ENSGT00940000158925 #17	ENSGT01100000263536.B.c.a #18	ENSGT00940000159319 #19	ENSGT01100000263484.C.a #20	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000169427 #24	ENSGT00940000158209 #25	ENSGT00950000182865.b.a.b.b.b.a #26	ENSGT00940000155814 #27	ENSGT00940000162731 #28	ENSGT00530000063715.b #29	ENSGT01050000244891.C.c.b #30	ENSGT00390000011048 #31	ENSGT00940000159715 #32	ENSGT00940000161898	ENSGT00390000011737 #34	ENSGT00390000011439 #35	ENSGT00940000162114	ENSGT00390000003838
Euarchontoglires	ANCESTRAL SPECIES	21	ENSGT00710000106860	ENSGT00940000160585 #7	ENSGT00940000159528 #8	ENSGT00390000011864 #9	ENSGT01050000244937.a.a #10	ENSGT00390000010170.a.b #11	ENSGT00390000003338 #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #14	ENSGT00950000183202.b #15	ENSGT01040000240444.A.a.a.a.a #16	ENSGT00940000158925 #17	ENSGT01100000263536.B.c.a #18	ENSGT00940000159319 #19	ENSGT01100000263484.C.a #20	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000169427 #24	ENSGT00940000158209 #25	ENSGT00950000182865.b.a.b.b.b.a #26	ENSGT00940000155814 #27	ENSGT00940000162731 #28	ENSGT00530000063715.b #29	ENSGT01050000244891.C.c.b #30	ENSGT00390000011048 #31	ENSGT00940000159715 #32	ENSGT00940000161898	ENSGT00390000011737 #34	ENSGT00390000011439 #35	ENSGT00940000162114	ENSGT00390000003838
Primates	ANCESTRAL SPECIES	26	ENSGT00710000106860	ENSGT00940000160585 #7	ENSGT00940000159528 #8	ENSGT00390000011864 #9	ENSGT01050000244937.a.a #10	ENSGT00390000010170.a.b #11	ENSGT00390000003338 #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #14	ENSGT00950000183202.b #15	ENSGT01040000240444.A.a.a.a.a #16	ENSGT00940000158925 #17	ENSGT01100000263536.B.c.a #18	ENSGT00940000159319 #19	ENSGT01100000263484.C.a #20	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000169427 #24	ENSGT00940000158209 #25	ENSGT00950000182865.b.a.b.b.b.a #26	ENSGT00940000155814 #27	ENSGT00940000162731 #28	ENSGT00530000063715.b #29	ENSGT01050000244891.C.c.b #30	ENSGT00390000011048 #31	ENSGT00940000159715 #32	ENSGT00940000161898	ENSGT00390000011737 #34	ENSGT00390000011439 #35	ENSGT00940000162114	ENSGT00390000003838
Haplorrhini	ANCESTRAL SPECIES	28	ENSGT00710000106860	ENSGT00940000160585 #7	ENSGT00940000159528 #8	ENSGT00390000011864 #9	ENSGT01050000244937.a.a #10	ENSGT00390000010170.a.b #11	ENSGT00390000003338 #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #14	ENSGT00950000183202.b #15	ENSGT01040000240444.A.a.a.a.a #16	ENSGT00940000158925 #17	ENSGT01100000263536.B.c.a #18	ENSGT00940000159319 #19	ENSGT01100000263484.C.a #20	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000169427 #24	ENSGT00940000158209 #25	ENSGT00950000182865.b.a.b.b.b.a #26	ENSGT00940000155814 #27	ENSGT00940000162731 #28	ENSGT00530000063715.b #29	ENSGT01050000244891.C.c.b #30	ENSGT00390000011048 #31	ENSGT00940000159715 #32	ENSGT00940000161898	ENSGT00390000011737 #34	ENSGT00390000011439 #35	ENSGT00940000162114	ENSGT00390000003838
Simiiformes	ANCESTRAL SPECIES	22	ENSGT01050000244937.a.a #10	ENSGT00940000161696.c.b	ENSGT00390000010170.a.b.c #11	ENSGT00390000003338 #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #14	ENSGT00950000183202.b #15	ENSGT00860000135722	ENSGT01040000240444.A.a.a.a.a #16	ENSGT00940000158925 #17	ENSGT00990000203619.B	ENSGT00910000146906	ENSGT01100000263536.B.c.a #18	ENSGT00940000159319 #19	ENSGT01100000263484.C.a #20	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000169427 #24	ENSGT00940000158209 #25	ENSGT00950000182865.b.a.b.b.b.a #26	ENSGT00940000155814 #27	ENSGT00940000162731 #28	ENSGT00530000063715.b #29	ENSGT01050000244891.C.c.b #30	ENSGT00390000011048 #31	ENSGT00940000159715 #32	ENSGT00940000161898	ENSGT00390000007612	ENSGT00390000011737 #34	ENSGT00390000011439.m.b #35	ENSGT00940000162114
Catarrhini	ANCESTRAL SPECIES	21	ENSGT00390000011864 #9	ENSGT01050000244937.a.a #10	ENSGT00940000161696.c.b	ENSGT00390000010170.a.b.c #11	ENSGT00390000003338 #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #14	ENSGT00950000183202.b #15	ENSGT00390000010218.f.a.b.a.a	ENSGT01040000240444.A.a.a.a.a #16	ENSGT00940000158925 #17	ENSGT00910000146906	ENSGT01100000263536.B.c.a #18	ENSGT00940000159319 #19	ENSGT01100000263484.C.a #20	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000169427 #24	ENSGT00940000158209 #25	ENSGT00950000182865.b.a.b.b.b.a #26	ENSGT00940000155814 #27	ENSGT00940000162731 #28	ENSGT00530000063715.b #29	ENSGT01050000244891.C.c.b #30	ENSGT00950000182767.b.b.d.hb.a.a.a.b.b	ENSGT00390000011048 #31	ENSGT00940000159715 #32	ENSGT00940000161898	ENSGT00390000007612	ENSGT00390000011737 #34	ENSGT00390000011439.m.b #35
Cercopithecidae	ANCESTRAL SPECIES	23	ENSGT00940000159528 #8	ENSGT00390000011864.o.a #9	ENSGT01050000244937.a.a #10	ENSGT00940000161696.c.b	ENSGT00390000010170.a.b.c.a #11	ENSGT00390000003338.i.b #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #14	ENSGT01040000240444.A.a.a.a.a #16	ENSGT00950000183202.b #15	ENSGT00940000158925 #17	ENSGT00910000146906	ENSGT01100000263536.B.c.a #18	ENSGT00940000159319 #19	ENSGT01100000263484.C.a #20	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000169427 #24	ENSGT00940000158209 #25	ENSGT00950000182865.b.a.b.b.b.a #26	ENSGT00940000155814 #27	ENSGT00940000162731 #28	ENSGT00530000063715.b #29	ENSGT01050000244891.C.c.b #30	ENSGT00950000182767.b.b.d.hb.a.a.a.b.b	ENSGT00390000011048 #31	ENSGT00940000159715 #32	ENSGT00940000161898	ENSGT00390000007612	ENSGT00390000011737 #34	ENSGT00390000011439.m.b #35
Cercopithecinae	ANCESTRAL SPECIES	20	ENSGT00390000011864.o.a #9	ENSGT01050000244937.a.a #10	ENSGT00940000161696.c.b	ENSGT00390000010170.a.b.c.a #11	ENSGT00390000003338.i.b #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #14	ENSGT00950000183202.b #15	ENSGT00390000010218.f.a.b.a.a	ENSGT01040000240444.A.a.a.a.a #16	ENSGT00940000158925 #17	ENSGT00910000146906	ENSGT01100000263536.B.c.a #18	ENSGT00940000159319 #19	ENSGT01100000263484.C.a #20	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000169427 #24	ENSGT00940000158209 #25	ENSGT00950000182865.b.a.b.b.b.a #26	ENSGT00940000155814 #27	ENSGT00940000162731 #28	ENSGT00530000063715.b #29	ENSGT01050000244891.C.c.b #30	ENSGT00950000182767.b.b.d.hb.a.a.a.b.b	ENSGT00390000011048 #31	ENSGT00940000159715 #32	ENSGT00940000161898	ENSGT00390000007612	ENSGT00390000011737 #34	ENSGT00390000011439.m.b #35
Vervet Monkey	MODERN SPECIES	22	RUBCNL (ENSCSAG00000017755) #7	LRCH1 (ENSCSAG00000017752) #8	ESD (ENSCSAG00000017750) #9	HTR2A (ENSCSAG00000017748) #10	SUCLA2 (ENSCSAG00000017747) #11	NUDT15 (ENSCSAG00000017745) #12	MED4 (ENSCSAG00000017743) #13	ITM2B (ENSCSAG00000017740) #14	RB1 (ENSCSAG00000017738) #15	LPAR6 (ENSCSAG00000018609) #16	RCBTB2 (ENSCSAG00000017736) #17	CYSLTR2 (ENSCSAG00000018610) #18	FNDC3A (ENSCSAG00000017734) #19	MLNR (ENSCSAG00000017724) #20	ENSCSAG00000017722 #21	CDADC1 (ENSCSAG00000017720) #22	CAB39L (ENSCSAG00000017717) #23	ENSCSAG00000017715 #24	SETDB2 (ENSCSAG00000017713) #25	PHF11 (ENSCSAG00000017710) #26	RCBTB1 (ENSCSAG00000017709) #27	ARL11 (ENSCSAG00000018612) #28	EBPL (ENSCSAG00000017708) #29	KPNA3 (ENSCSAG00000017707) #30	SPRYD7 (ENSCSAG00000017704) #31	TRIM13 (ENSCSAG00000018614) #32	ENSCSAG00000017703 #33	DLEU7 (ENSCSAG00000017702) #34	RNASEH2B (ENSCSAG00000017701) #35	FAM124A (ENSCSAG00000017698) #36	SERPINE3 (ENSCSAG00000017696) #37
Cercopithecinae_a	ANCESTRAL SPECIES	19	ENSGT00390000011864.o.a #9	ENSGT01050000244937.a.a #10	ENSGT00940000161696.c.b	ENSGT00390000010170.a.b.c.a #11	ENSGT00390000003338.i.b #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #14	ENSGT00950000183202.b #15	ENSGT00390000010218.f.a.b.a.a	ENSGT01040000240444.A.a.a.a.a #16	ENSGT00940000158925 #17	ENSGT00910000146906	ENSGT01100000263536.B.c.a #18	ENSGT00940000159319 #19	ENSGT01100000263484.C.a #20	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00390000014577.a.k.b	ENSGT00940000158209 #25	ENSGT00950000182865.b.a.b.b.b.a #26	ENSGT00940000155814 #27	ENSGT00940000162731 #28	ENSGT00530000063715.b #29	ENSGT01050000244891.C.c.b #30	ENSGT00950000182767.b.b.d.hb.a.a.a.b.b	ENSGT00390000011048 #31	ENSGT00940000159715 #32	ENSGT00940000161898	ENSGT00390000007612	ENSGT00390000011737 #34	ENSGT00390000011439.m.b #35
Macaca	ANCESTRAL SPECIES	19	ENSGT00940000159528 #8	ENSGT00390000011864.p ##9	ENSGT01050000244937.a.a #10	ENSGT00390000010170.a.b.c.a #11	ENSGT00390000003338.i.b #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #14	ENSGT00950000183202.b #15	ENSGT00390000010218.f.a.b.a.a	ENSGT01040000240444.A.a.a.a.a #16	ENSGT00940000158925 #17	ENSGT00910000146906	ENSGT01100000263536.B.c.a #18	ENSGT00940000159319 #19	ENSGT01030000237919	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00390000014577.a.k.b	ENSGT00940000158209 #25	ENSGT00950000182865.b.a.b.b.b.a #26	ENSGT00940000155814 #27	ENSGT00940000162731 #28	ENSGT00530000063715.b #29	ENSGT01050000244891.C.c.b #30	ENSGT00950000182767.b.b.d.hb.a.a.a.b.b	ENSGT00390000011048 #31	ENSGT00940000159715 #32	ENSGT00940000161898	ENSGT00390000007612	ENSGT00390000011737 #34	ENSGT00390000011439.m.b #35
Pig-tailed macaque	MODERN SPECIES	171	ENSMNEG00000034915 #9	HTR2A (ENSMNEG00000020560) #10	ENSMNEG00000006210 #11	ENSMNEG00000041226 #12	MED4 (ENSMNEG00000040390) #13	ITM2B (ENSMNEG00000036643) #14	RB1 (ENSMNEG00000030265) #15	ENSMNEG00000034410	LPAR6 (ENSMNEG00000000292) #16	RCBTB2 (ENSMNEG00000045246) #17	ENSMNEG00000012494	CYSLTR2 (ENSMNEG00000044194) #18	FNDC3A (ENSMNEG00000038484) #19	ENSMNEG00000029704	MLNR (ENSMNEG00000043576) #20	CDADC1 (ENSMNEG00000018746) #22	CAB39L (ENSMNEG00000045272) #23	ENSMNEG00000041626	SETDB2 (ENSMNEG00000037148) #25	PHF11 (ENSMNEG00000033252) #26	RCBTB1 (ENSMNEG00000031917) #27	EBPL (ENSMNEG00000030512) #29	KPNA3 (ENSMNEG00000040002) #30	ENSMNEG00000040611	SPRYD7 (ENSMNEG00000029382) #31	TRIM13 (ENSMNEG00000035416) #32	KCNRG (ENSMNEG00000029373)	ENSMNEG00000034266	ENSMNEG00000038194	DLEU7 (ENSMNEG00000037049) #34	RNASEH2B (ENSMNEG00000030580) #35
Macaca_a	ANCESTRAL SPECIES	19	ENSGT00450000040303.d	ENSGT00940000160585 #7	ENSGT00940000159528 #8	ENSGT00390000011864.p ##9	ENSGT01050000244937.a.a #10	ENSGT00390000010170.a.b.c.a #11	ENSGT00390000003338.i.b #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #14	ENSGT00950000183202.b #15	ENSGT00940000158925 #17	ENSGT00910000146906	ENSGT01100000263536.B.c.a #18	ENSGT00940000159319 #19	ENSGT01030000237919	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #25	ENSGT00950000182865.b.a.b.b.b.a #26	ENSGT00940000155814 #27	ENSGT00940000162731 #28	ENSGT00530000063715.b #29	ENSGT01050000244891.C.c.b #30	ENSGT00390000011048 #31	ENSGT00940000159715 #32	ENSGT00940000161898	ENSGT00390000007612	ENSGT00390000011737 #34	ENSGT00390000011439.m.b #35	ENSGT00390000003838	ENSGT00590000083134.a.a #36
Crab-eating macaque	MODERN SPECIES	8	SUCLA2 (ENSMFAG00000043471) #11	NUDT15 (ENSMFAG00000042118) #12	MED4 (ENSMFAG00000036744) #13	ITM2B (ENSMFAG00000036817) #14	RB1 (ENSMFAG00000004544) #15	ENSMFAG00000059645	ENSMFAG00000064054	RCBTB2 (ENSMFAG00000042366) #17	ENSMFAG00000059363	CYSLTR2 (ENSMFAG00000055024) #18	FNDC3A (ENSMFAG00000032790) #19	ENSMFAG00000049454	ENSMFAG00000064862	ENSMFAG00000033530	ENSMFAG00000028078	CDADC1 (ENSMFAG00000032976) #22	CAB39L (ENSMFAG00000031142) #23	SETDB2 (ENSMFAG00000032631) #25	PHF11 (ENSMFAG00000044828) #26	RCBTB1 (ENSMFAG00000045129) #27	ARL11 (ENSMFAG00000051612) #28	ENSMFAG00000042629 #29	KPNA3 (ENSMFAG00000043025) #30	SPRYD7 (ENSMFAG00000041859) #31	TRIM13 (ENSMFAG00000042055) #32	KCNRG (ENSMFAG00000042387)	ENSMFAG00000055663	RNASEH2B (ENSMFAG00000038464) #35	C13orf42 (ENSMFAG00000018059)	FAM124A (ENSMFAG00000030099) #36	SERPINE3 (ENSMFAG00000030949) #37
Rhesus	MODERN SPECIES	8	ENSMMUG00000059778	SUCLA2 (ENSMMUG00000007539) #11	NUDT15 (ENSMMUG00000056464) #12	MED4 (ENSMMUG00000017988) #13	ITM2B (ENSMMUG00000007888) #14	RB1 (ENSMMUG00000007891) #15	RCBTB2 (ENSMMUG00000017688) #17	CYSLTR2 (ENSMMUG00000063377) #18	ENSMMUG00000063973	ENSMMUG00000062735	ENSMMUG00000059939	FNDC3A (ENSMMUG00000023756) #19	ENSMMUG00000063566	ENSMMUG00000052690	MLNR (ENSMMUG00000056827) #20	CDADC1 (ENSMMUG00000013470) #22	CAB39L (ENSMMUG00000013472) #23	SETDB2 (ENSMMUG00000013473) #25	PHF11 (ENSMMUG00000013476) #26	RCBTB1 (ENSMMUG00000021029) #27	ARL11 (ENSMMUG00000011766) #28	EBPL (ENSMMUG00000020571) #29	KPNA3 (ENSMMUG00000020572) #30	SPRYD7 (ENSMMUG00000009579) #31	TRIM13 (ENSMMUG00000010898) #32	KCNRG (ENSMMUG00000010899)	ENSMMUG00000055718	ENSMMUG00000058884	DLEU7 (ENSMMUG00000021744) #34	RNASEH2B (ENSMMUG00000021746) #35	C17H13orf42 (ENSMMUG00000054118)
Cercopithecinae_b	ANCESTRAL SPECIES	28	ENSGT00940000159528 #8	ENSGT00390000011864.o.a #9	ENSGT01050000244937.a.a #10	ENSGT00940000161696.c.b	ENSGT00390000010170.a.b.c.a #11	ENSGT00390000003338.i.b #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #14	ENSGT01040000240444.A.a.a.a.a #16	ENSGT00950000183202.b #15	ENSGT00940000158925 #17	ENSGT00910000146906	ENSGT01100000263536.B.c.a #18	ENSGT00940000159319 #19	ENSGT01100000263484.C.a #20	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00390000014577.a.k.b	ENSGT00940000158209 #25	ENSGT00950000182865.b.a.b.b.b.a #26	ENSGT00940000155814 #27	ENSGT00940000162731 #28	ENSGT00530000063715.b #29	ENSGT01050000244891.C.c.b #30	ENSGT00950000182767.b.b.d.hb.a.a.a.b.b	ENSGT00390000011048 #31	ENSGT00940000159715 #32	ENSGT00940000161898	ENSGT00390000007612	ENSGT00390000011737 #34	ENSGT00390000011439.m.b #35
Olive baboon	MODERN SPECIES	6	LRCH1 (ENSPANG00000006286) #8	ENSPANG00000010192 #9	HTR2A (ENSPANG00000022427) #10	ENSPANG00000050620	SUCLA2 (ENSPANG00000002938) #11	NUDT15 (ENSPANG00000018183) #12	MED4 (ENSPANG00000017223) #13	ENSPANG00000050365	ITM2B (ENSPANG00000010611) #14	RB1 (ENSPANG00000007572) #15	LPAR6 (ENSPANG00000010821) #16	RCBTB2 (ENSPANG00000017177) #17	CYSLTR2 (ENSPANG00000010610) #18	FNDC3A (ENSPANG00000006006) #19	MLNR (ENSPANG00000005882) #20	CDADC1 (ENSPANG00000017052) #22	CAB39L (ENSPANG00000046091) #23	SETDB2 (ENSPANG00000017051) #25	PHF11 (ENSPANG00000009973) #26	RCBTB1 (ENSPANG00000013866) #27	ARL11 (ENSPANG00000006280) #28	EBPL (ENSPANG00000016575) #29	KPNA3 (ENSPANG00000012863) #30	ENSPANG00000042729	ENSPANG00000049978	ENSPANG00000012862	SPRYD7 (ENSPANG00000010055) #31	TRIM13 (ENSPANG00000021160) #32	KCNRG (ENSPANG00000029368)	ENSPANG00000006742	ENSPANG00000048080
Cercopithecinae_d	ANCESTRAL SPECIES	54	ENSGT00390000011864.o.a #9	ENSGT01050000244937.a.a #10	ENSGT00940000161696.c.b	ENSGT00390000010170.a.b.c.a #11	ENSGT00390000003338.i.b #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #14	ENSGT01040000240444.A.a.a.a.a #16	ENSGT00950000183202.b #15	ENSGT00940000158925 #17	ENSGT00910000146906	ENSGT01100000263536.B.c.a #18	ENSGT00940000159319 #19	ENSGT00390000002349.f	ENSGT01100000263484.C.a #20	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00390000014577.a.k.b	ENSGT00940000158209 #25	ENSGT00950000182865.b.a.b.b.b.a #26	ENSGT00940000155814 #27	ENSGT00940000162731 #28	ENSGT00530000063715.b #29	ENSGT01050000244891.C.c.b #30	ENSGT00950000182767.b.b.d.hb.a.a.a.b.b	ENSGT00390000011048 #31	ENSGT00940000159715 #32	ENSGT00940000161898	ENSGT00390000007612	ENSGT00390000011737 #34	ENSGT00390000011439.m.b #35
Drill	MODERN SPECIES	989																CDADC1 (ENSMLEG00000002766) #22	CAB39L (ENSMLEG00000031934) #23	ENSMLEG00000037352	SETDB2 (ENSMLEG00000043613) #25	PHF11 (ENSMLEG00000034470) #26	RCBTB1 (ENSMLEG00000030558) #27	ARL11 (ENSMLEG00000013105) #28	EBPL (ENSMLEG00000034869) #29	KPNA3 (ENSMLEG00000032271) #30	ENSMLEG00000039733	SPRYD7 (ENSMLEG00000035414) #31	TRIM13 (ENSMLEG00000015458) #32	KCNRG (ENSMLEG00000028084)	ENSMLEG00000035068	DLEU7 (ENSMLEG00000042275) #34	RNASEH2B (ENSMLEG00000043911) #35
Sooty mangabey	MODERN SPECIES	125	ENSCATG00000040583 #9	HTR2A (ENSCATG00000037177) #10	ENSCATG00000044105	ENSCATG00000040280 #11	ENSCATG00000009200 #12	MED4 (ENSCATG00000040995) #13	ITM2B (ENSCATG00000030426) #14	LPAR6 (ENSCATG00000014982) #16	RB1 (ENSCATG00000018582) #15	ENSCATG00000006797	RCBTB2 (ENSCATG00000033627) #17	CYSLTR2 (ENSCATG00000008094) #18	FNDC3A (ENSCATG00000044050) #19	ENSCATG00000007919	MLNR (ENSCATG00000007804) #20	CDADC1 (ENSCATG00000033587) #22	ENSCATG00000029394	CAB39L (ENSCATG00000040811) #23	SETDB2 (ENSCATG00000002055) #25	PHF11 (ENSCATG00000035264) #26	RCBTB1 (ENSCATG00000042520) #27	ARL11 (ENSCATG00000011750) #28	ENSCATG00000033973	KPNA3 (ENSCATG00000035335) #30	ENSCATG00000017588	SPRYD7 (ENSCATG00000039787) #31	TRIM13 (ENSCATG00000038413) #32	KCNRG (ENSCATG00000035411)	ENSCATG00000029303	DLEU7 (ENSCATG00000033900) #34	RNASEH2B (ENSCATG00000031336) #35
Rhinopithecus	ANCESTRAL SPECIES	165			ENSGT00940000161696.c.b	ENSGT00390000010170.a.b.c.a #11	ENSGT00390000003338.i.b #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #14	ENSGT00390000010218.f.a.b.a.a	ENSGT01040000240444.A.a.a.a.a #16	ENSGT00950000183202.b #15	ENSGT00940000158925 #17	ENSGT01100000263536.B.c.a #18	ENSGT00940000159319 #19	ENSGT01100000263484.C.a #20	ENSGT00390000008978.q.a.b	ENSGT00940000153676.b #22	ENSGT00390000014577.a.k.b	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #25	ENSGT00950000182865.b.a.b.b.b.a #26	ENSGT00940000155814 #27	ENSGT00940000162731 #28	ENSGT00530000063715.b #29	ENSGT01050000244891.C.c.b #30	ENSGT00950000182767.b.b.d.hb.a.a.a.b.b.a	ENSGT00390000011048 #31	ENSGT00940000159715 #32	ENSGT00940000161898	ENSGT00390000007612	ENSGT00390000011737 #34	ENSGT00390000011439.m.b #35
Black snub-nosed monkey	MODERN SPECIES	464				ENSRBIG00000036056	SUCLA2 (ENSRBIG00000033328) #11	ENSRBIG00000030175 #12	MED4 (ENSRBIG00000037170) #13	ITM2B (ENSRBIG00000030686) #14	ENSRBIG00000029549	LPAR6 (ENSRBIG00000029799) #16	RB1 (ENSRBIG00000033901) #15	RCBTB2 (ENSRBIG00000028201) #17	FNDC3A (ENSRBIG00000034032) #19	MLNR (ENSRBIG00000043617) #20	ENSRBIG00000033894	CDADC1 (ENSRBIG00000004767) #22	ENSRBIG00000004387	CAB39L (ENSRBIG00000031272) #23	SETDB2 (ENSRBIG00000006562) #25	PHF11 (ENSRBIG00000028151) #26	RCBTB1 (ENSRBIG00000034157) #27	ARL11 (ENSRBIG00000024949) #28	EBPL (ENSRBIG00000043563) #29	KPNA3 (ENSRBIG00000043478) #30	ENSRBIG00000023911	SPRYD7 (ENSRBIG00000028326) #31	TRIM13 (ENSRBIG00000035646) #32	KCNRG (ENSRBIG00000044018)	ENSRBIG00000032886	DLEU7 (ENSRBIG00000041915) #34	RNASEH2B (ENSRBIG00000028928) #35
Golden snub-nosed monkey	MODERN SPECIES	1111				ENSRROG00000017591 #11	ENSRROG00000003860 #12	MED4 (ENSRROG00000024064) #13	ITM2B (ENSRROG00000044024) #14	ENSRROG00000039915	LPAR6 (ENSRROG00000014042) #16	RB1 (ENSRROG00000035485) #15	RCBTB2 (ENSRROG00000035536) #17	CYSLTR2 (ENSRROG00000031421) #18	FNDC3A (ENSRROG00000035387) #19	MLNR (ENSRROG00000044972) #20	ENSRROG00000032981	CDADC1 (ENSRROG00000032374) #22	ENSRROG00000037477	CAB39L (ENSRROG00000012193) #23	SETDB2 (ENSRROG00000032499) #25	PHF11 (ENSRROG00000039790) #26	RCBTB1 (ENSRROG00000037694) #27	ARL11 (ENSRROG00000000591) #28	EBPL (ENSRROG00000045110) #29	KPNA3 (ENSRROG00000040985) #30	ENSRROG00000035429	SPRYD7 (ENSRROG00000045600) #31	TRIM13 (ENSRROG00000034403) #32	KCNRG (ENSRROG00000036212)	ENSRROG00000044631	ENSRROG00000043139	DLEU7 (ENSRROG00000035248) #34
Hominoidea	ANCESTRAL SPECIES	21	ENSGT00940000159528 #8	ENSGT00390000011864 #9	ENSGT01050000244937.a.a #10	ENSGT00390000010170.a.b.c #11	ENSGT00390000003338 #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #14	ENSGT00950000183202.b #15	ENSGT00390000010218.f.a.b.a.a	ENSGT01040000240444.A.a.a.a.a #16	ENSGT00940000158925 #17	ENSGT00910000146906	ENSGT01100000263536.B.c.a #18	ENSGT00940000159319 #19	ENSGT01100000263484.C.a #20	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #25	ENSGT00950000182865.b.a.b.b.b.a #26	ENSGT00940000155814 #27	ENSGT00940000162731 #28	ENSGT00530000063715.b #29	ENSGT01050000244891.C.c.b #30	ENSGT00950000182767.b.b.d.hb.a.a.a.b.b.f	ENSGT00390000011048 #31	ENSGT00940000159715 #32	ENSGT00940000161898	ENSGT00390000007612	ENSGT00390000011737 #34	ENSGT00390000011439.m.b #35	ENSGT00940000162114
Hominidae	ANCESTRAL SPECIES	23	ENSGT00940000159528 #8	ENSGT00390000011864 #9	ENSGT01050000244937.a.a #10	ENSGT00390000010170.a.b.c #11	ENSGT00390000003338 #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #14	ENSGT00950000183202.b #15	ENSGT00390000010218.f.a.b.a.a	ENSGT01040000240444.A.a.a.a.a #16	ENSGT00940000158925 #17	ENSGT00910000146906	ENSGT01100000263536.B.c.a #18	ENSGT00940000159319 #19	ENSGT01100000263484.C.a #20	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #25	ENSGT00950000182865.b.a.b.b.b.a #26	ENSGT00940000155814 #27	ENSGT00940000162731 #28	ENSGT00530000063715.b #29	ENSGT01050000244891.C.c.b #30	ENSGT00950000182767.b.b.d.hb.a.a.a.b.b.f	ENSGT00390000011048 #31	ENSGT00940000159715 #32	ENSGT00940000161898	ENSGT00390000007612	ENSGT00390000011737 #34	ENSGT00390000011439.m.b #35	ENSGT00940000162114
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	23	ENSGT00390000011864 #9	ENSGT01050000244937.a.a #10	ENSGT00390000010170.a.b.c.c #11	ENSGT00390000003338 #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #14	ENSGT00950000183202.b #15	ENSGT00390000010218.f.a.b.a.a	ENSGT01040000240444.A.a.a.a.a #16	ENSGT00940000158925 #17	ENSGT00910000146906	ENSGT01100000263536.B.c.a #18	ENSGT00940000159319 #19	ENSGT00390000018086.n.a.b.b	ENSGT01100000263484.C.a #20	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #25	ENSGT00950000182865.b.a.b.b.b.a #26	ENSGT00940000155814 #27	ENSGT00940000162731 #28	ENSGT00530000063715.b.a.a #29	ENSGT01050000244891.C.c.b #30	ENSGT00950000182767.b.b.d.hb.a.a.a.b.b.e	ENSGT00390000011048 #31	ENSGT00940000159715 #32	ENSGT00940000161898	ENSGT00390000007612	ENSGT00390000001347.vb.a.b.b.a.b	ENSGT00390000011737 #34	ENSGT00390000011439.m.b #35
Homo/Pan group	ANCESTRAL SPECIES	22	ENSGT00390000011864 #9	ENSGT01050000244937.a.a #10	ENSGT00390000010170.a.b.c.c #11	ENSGT00390000003338 #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #14	ENSGT00950000183202.b #15	ENSGT00390000010218.f.a.b.a.a	ENSGT01040000240444.A.a.a.a.a #16	ENSGT00940000158925 #17	ENSGT00910000146906	ENSGT01100000263536.B.c.a #18	ENSGT00940000159319 #19	ENSGT00390000018086.n.a.b.b	ENSGT01100000263484.C.a #20	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #25	ENSGT00950000182865.b.a.b.b.b.a #26	ENSGT00940000155814 #27	ENSGT00940000162731 #28	ENSGT00530000063715.b.a.a #29	ENSGT01050000244891.C.c.b #30	ENSGT00390000011048 #31	ENSGT00940000159715 #32	ENSGT00940000161898	ENSGT00390000007612	ENSGT00390000001347.vb.a.b.b.a.b	ENSGT00390000011737 #34	ENSGT00390000011439.m.b #35	ENSGT00940000162114
Pan	ANCESTRAL SPECIES	22	ENSGT00940000161696.c.b	ENSGT00940000154415.x.b	ENSGT00390000010170.a.b.c.c #11	ENSGT00390000003338 #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #14	ENSGT00950000183202.b #15	ENSGT00390000010218.f.a.b.a.a	ENSGT01040000240444.A.a.a.a.a #16	ENSGT00940000158925 #17	ENSGT00910000146906	ENSGT01100000263536.B.c.a #18	ENSGT00940000159319 #19	ENSGT00390000018086.n.a.b.b	ENSGT01100000263484.C.a #20	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #25	ENSGT00950000182865.b.a.b.b.b.a #26	ENSGT00940000155814 #27	ENSGT00940000162731 #28	ENSGT00530000063715.b.a.a #29	ENSGT01050000244891.C.c.b #30	ENSGT00950000182767.b.b.d.hb.a.a.a.b.a.d	ENSGT00390000011048 #31	ENSGT00940000159715 #32	ENSGT00940000161898	ENSGT00390000007612	ENSGT00390000001347.vb.a.b.b.a.b	ENSGT00390000011737 #34	ENSGT00390000011439.m.b #35
Chimpanzee	MODERN SPECIES	4	HTR2A (ENSPTRG00000005858) #10	ENSPTRG00000044084	ENSPTRG00000040949	SUCLA2 (ENSPTRG00000005859) #11	ENSPTRG00000042329 #12	MED4 (ENSPTRG00000005861) #13	ITM2B (ENSPTRG00000005863) #14	RB1 (ENSPTRG00000005864) #15	LPAR6 (ENSPTRG00000005865) #16	RCBTB2 (ENSPTRG00000005866) #17	ENSPTRG00000045034	CYSLTR2 (ENSPTRG00000045872) #18	FNDC3A (ENSPTRG00000023284) #19	ENSPTRG00000051644	MLNR (ENSPTRG00000045556) #20	CDADC1 (ENSPTRG00000005871) #22	CAB39L (ENSPTRG00000005872) #23	SETDB2 (ENSPTRG00000005873) #25	PHF11 (ENSPTRG00000005874) #26	RCBTB1 (ENSPTRG00000005875) #27	ARL11 (ENSPTRG00000005876) #28	EBPL (ENSPTRG00000005877) #29	KPNA3 (ENSPTRG00000005878) #30	ENSPTRG00000051804	SPRYD7 (ENSPTRG00000005879) #31	TRIM13 (ENSPTRG00000031189) #32	KCNRG (ENSPTRG00000005881)	ENSPTRG00000045142	ENSPTRG00000045923	DLEU7 (ENSPTRG00000005885) #34	RNASEH2B (ENSPTRG00000005886) #35
Bonobo	MODERN SPECIES	4	ENSPPAG00000035492	ENSPPAG00000039901	SUCLA2 (ENSPPAG00000037438) #11	NUDT15 (ENSPPAG00000037539) #12	MED4 (ENSPPAG00000038697) #13	ENSPPAG00000040476 #14	RB1 (ENSPPAG00000002165) #15	ENSPPAG00000030030	LPAR6 (ENSPPAG00000006621) #16	RCBTB2 (ENSPPAG00000038976) #17	ENSPPAG00000029505	CYSLTR2 (ENSPPAG00000003898) #18	FNDC3A (ENSPPAG00000032461) #19	ENSPPAG00000032803	MLNR (ENSPPAG00000027956) #20	CDADC1 (ENSPPAG00000028450) #22	CAB39L (ENSPPAG00000029104) #23	SETDB2 (ENSPPAG00000039854) #25	PHF11 (ENSPPAG00000030056) #26	RCBTB1 (ENSPPAG00000032068) #27	ARL11 (ENSPPAG00000033238) #28	ENSPPAG00000042659 #29	KPNA3 (ENSPPAG00000033827) #30	ENSPPAG00000039069	SPRYD7 (ENSPPAG00000039609) #31	TRIM13 (ENSPPAG00000039706) #32	KCNRG (ENSPPAG00000006776)	ENSPPAG00000025890	ENSPPAG00000028472	DLEU7 (ENSPPAG00000019375) #34	RNASEH2B (ENSPPAG00000026374) #35
Human	MODERN SPECIES	4	LRRC63 (ENSG00000173988)	RUBCNL (ENSG00000102445) #7	LRCH1 (ENSG00000136141) #8	ESD (ENSG00000139684) #9	HTR2A (ENSG00000102468) #10	SUCLA2 (ENSG00000136143) #11	NUDT15 (ENSG00000136159) #12	MED4 (ENSG00000136146) #13	ITM2B (ENSG00000136156) #14	RB1 (ENSG00000139687) #15	LPAR6 (ENSG00000139679) #16	RCBTB2 (ENSG00000136161) #17	CYSLTR2 (ENSG00000152207) #18	FNDC3A (ENSG00000102531) #19	MLNR (ENSG00000102539) #20	CDADC1 (ENSG00000102543) #22	CAB39L (ENSG00000102547) #23	SETDB2 (ENSG00000136169) #25	PHF11 (ENSG00000136147) #26	RCBTB1 (ENSG00000136144) #27	ARL11 (ENSG00000152213) #28	EBPL (ENSG00000123179) #29	KPNA3 (ENSG00000102753) #30	SPRYD7 (ENSG00000123178) #31	TRIM13 (ENSG00000204977) #32	KCNRG (ENSG00000198553)	DLEU7 (ENSG00000186047) #34	RNASEH2B (ENSG00000136104) #35	C13orf42 (ENSG00000226792)	FAM124A (ENSG00000150510) #36	SERPINE3 (ENSG00000253309) #37
Gorilla	MODERN SPECIES	4	HTR2A (ENSGGOG00000038568) #10	ENSGGOG00000040252	SUCLA2 (ENSGGOG00000008224) #11	NUDT15 (ENSGGOG00000008232) #12	MED4 (ENSGGOG00000014132) #13	ITM2B (ENSGGOG00000006744) #14	RB1 (ENSGGOG00000016440) #15	ENSGGOG00000025744	LPAR6 (ENSGGOG00000015398) #16	RCBTB2 (ENSGGOG00000004291) #17	ENSGGOG00000043311	CYSLTR2 (ENSGGOG00000040254) #18	FNDC3A (ENSGGOG00000005701) #19	ENSGGOG00000042037	MLNR (ENSGGOG00000003817) #20	CDADC1 (ENSGGOG00000005192) #22	CAB39L (ENSGGOG00000000576) #23	SETDB2 (ENSGGOG00000016016) #25	PHF11 (ENSGGOG00000014624) #26	RCBTB1 (ENSGGOG00000007787) #27	ARL11 (ENSGGOG00000004442) #28	EBPL (ENSGGOG00000023967) #29	KPNA3 (ENSGGOG00000037674) #30	ENSGGOG00000038396	SPRYD7 (ENSGGOG00000005611) #31	TRIM13 (ENSGGOG00000001619) #32	KCNRG (ENSGGOG00000001621)	ENSGGOG00000025724	ENSGGOG00000043357	DLEU7 (ENSGGOG00000005664) #34	RNASEH2B (ENSGGOG00000001044) #35
Orangutan	MODERN SPECIES	4	RUBCNL (ENSPPYG00000005348) #7	ENSPPYG00000035548	LRCH1 (ENSPPYG00000005349) #8	ESD (ENSPPYG00000029594) #9	HTR2A (ENSPPYG00000005351) #10	SUCLA2 (ENSPPYG00000005352) #11	MED4 (ENSPPYG00000005354) #13	NUDT15 (ENSPPYG00000005353) #12	ITM2B (ENSPPYG00000005356) #14	RB1 (ENSPPYG00000005357) #15	RCBTB2 (ENSPPYG00000005361) #17	CYSLTR2 (ENSPPYG00000005362) #18	FNDC3A (ENSPPYG00000005363) #19	ENSPPYG00000037999	MLNR (ENSPPYG00000005364) #20	CDADC1 (ENSPPYG00000005365) #22	CAB39L (ENSPPYG00000005366) #23	SETDB2 (ENSPPYG00000005368) #25	PHF11 (ENSPPYG00000005369) #26	RCBTB1 (ENSPPYG00000005370) #27	ARL11 (ENSPPYG00000031330) #28	EBPL (ENSPPYG00000032916) #29	KPNA3 (ENSPPYG00000005372) #30	ENSPPYG00000039366	ENSPPYG00000031527	SPRYD7 (ENSPPYG00000032002) #31	TRIM13 (ENSPPYG00000036477) #32	ENSPPYG00000005375	ENSPPYG00000032765	DLEU7 (ENSPPYG00000005377) #34	RNASEH2B (ENSPPYG00000005378) ##35
Gibbon	MODERN SPECIES	20	LRCH1 (ENSNLEG00000002812) #8	ESD (ENSNLEG00000002862) #9	HTR2A (ENSNLEG00000002930) #10	ENSNLEG00000034996	SUCLA2 (ENSNLEG00000002948) #11	NUDT15 (ENSNLEG00000031040) #12	MED4 (ENSNLEG00000002961) #13	ITM2B (ENSNLEG00000032591) #14	RB1 (ENSNLEG00000003150) #15	ENSNLEG00000029413	LPAR6 (ENSNLEG00000032872) #16	RCBTB2 (ENSNLEG00000003314) #17	FNDC3A (ENSNLEG00000003383) #19	ENSNLEG00000033908	MLNR (ENSNLEG00000003571) #20	CDADC1 (ENSNLEG00000003574) #22	CAB39L (ENSNLEG00000003584) #23	SETDB2 (ENSNLEG00000003613) #25	PHF11 (ENSNLEG00000003639) #26	RCBTB1 (ENSNLEG00000003661) #27	ARL11 (ENSNLEG00000031734) #28	EBPL (ENSNLEG00000030148) #29	KPNA3 (ENSNLEG00000003711) #30	SPRYD7 (ENSNLEG00000003774) #31	TRIM13 (ENSNLEG00000033521) #32	ENSNLEG00000003786	ENSNLEG00000031661	DLEU7 (ENSNLEG00000003803) #34	RNASEH2B (ENSNLEG00000003804) #35	ENSNLEG00000003855	C13orf42 (ENSNLEG00000031949)
Platyrrhini	ANCESTRAL SPECIES	23	ENSGT01050000244937.a.a #10	ENSGT00940000161696.c.b	ENSGT00390000010170.a.b.c.e #11	ENSGT00390000003338.m #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #14	ENSGT00950000183202.b #15	ENSGT00860000135722	ENSGT01040000240444.A.a.a.a.a #16	ENSGT00940000158925 #17	ENSGT00990000203619.B	ENSGT00910000146906	ENSGT01100000263536.B.c.a #18	ENSGT00940000159319 #19	ENSGT01100000263484.C.a #20	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #25	ENSGT00950000182865.b.a.b.b.b.a #26	ENSGT00940000155814 #27	ENSGT00940000162731 #28	ENSGT00530000063715.b #29	ENSGT01050000244891.C.c.b #30	ENSGT00390000011048 #31	ENSGT00940000159715 #32	ENSGT00940000161898	ENSGT00390000007612	ENSGT00390000011737 #34	ENSGT00390000011439.m.b #35	ENSGT00940000162114	ENSGT00390000003838
Cebidae	ANCESTRAL SPECIES	26	ENSGT01050000244937.a.a #10	ENSGT00940000161696.c.b	ENSGT00390000010170.a.b.c.e #11	ENSGT00390000003338.m #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #14	ENSGT00950000183202.b #15	ENSGT00860000135722	ENSGT01040000240444.A.a.a.a.a #16	ENSGT00940000158925 #17	ENSGT00990000203619.B	ENSGT00910000146906	ENSGT01100000263536.B.c.a #18	ENSGT00940000159319 #19	ENSGT01100000263484.C.a #20	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #25	ENSGT00950000182865.b.a.b.b.b.a #26	ENSGT00940000155814 #27	ENSGT00940000162731 #28	ENSGT00530000063715.b #29	ENSGT01050000244891.C.c.b #30	ENSGT00390000011048 #31	ENSGT00940000159715 #32	ENSGT00940000161898	ENSGT00390000011737 #34	ENSGT00390000011439.m.b #35	ENSGT00390000011439.m.a.a ##35	ENSGT00940000162114	ENSGT00390000003838
Cebidae_a	ANCESTRAL SPECIES	28	ENSGT00390000011864.m.a #9	ENSGT01050000244937.a.a #10	ENSGT00940000161696.c.b	ENSGT00390000010170.a.b.c.e #11	ENSGT00390000003338.m #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #14	ENSGT00950000183202.b #15	ENSGT00860000135722	ENSGT01040000240444.A.a.a.a.a #16	ENSGT00940000158925 #17	ENSGT00910000146906	ENSGT01100000263536.B.c.a #18	ENSGT00940000159319 #19	ENSGT01100000263484.C.a #20	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #25	ENSGT00950000182865.b.a.b.b.b.a #26	ENSGT00940000155814 #27	ENSGT00530000063715.b #29	ENSGT01050000244891.C.c.b #30	ENSGT00390000011048 #31	ENSGT00940000159715 #32	ENSGT00940000161898	ENSGT00390000011737 #34	ENSGT00390000011439.m.b #35	ENSGT00390000003838	ENSGT00590000083134.a.a #36	ENSGT00940000160941 #37	ENSGT00390000016655.a.a.b
Capuchin	MODERN SPECIES	94	LRRC63 (ENSCCAG00000024800)	RUBCNL (ENSCCAG00000023570) #7	LRCH1 (ENSCCAG00000036225) #8	ENSCCAG00000025918 #9	HTR2A (ENSCCAG00000020537) #10	ENSCCAG00000027774	SUCLA2 (ENSCCAG00000036078) #11	NUDT15 (ENSCCAG00000034630) #12	MED4 (ENSCCAG00000037625) #13	ITM2B (ENSCCAG00000025031) #14	LPAR6 (ENSCCAG00000014413) #16	RB1 (ENSCCAG00000019226) #15	RCBTB2 (ENSCCAG00000029598) #17	FNDC3A (ENSCCAG00000022083) #19	MLNR (ENSCCAG00000012939) #20	CDADC1 (ENSCCAG00000037595) #22	CAB39L (ENSCCAG00000027201) #23	SETDB2 (ENSCCAG00000031604) #25	PHF11 (ENSCCAG00000020321) #26	RCBTB1 (ENSCCAG00000024661) #27	ENSCCAG00000034833	EBPL (ENSCCAG00000028820) #29	KPNA3 (ENSCCAG00000034651) #30	SPRYD7 (ENSCCAG00000035704) #31	TRIM13 (ENSCCAG00000021391) #32	KCNRG (ENSCCAG00000033873)	DLEU7 (ENSCCAG00000033394) #34	RNASEH2B (ENSCCAG00000026979) #35	C13orf42 (ENSCCAG00000017028)
Bolivian squirrel monkey	MODERN SPECIES	198	ENSSBOG00000033017	ENSSBOG00000026010	ENSSBOG00000030465	ENSSBOG00000029965 #11	NUDT15 (ENSSBOG00000020573) #12	MED4 (ENSSBOG00000024066) #13	ITM2B (ENSSBOG00000018913) #14	RB1 (ENSSBOG00000027893) #15	ENSSBOG00000026221	LPAR6 (ENSSBOG00000036320) #16	RCBTB2 (ENSSBOG00000026825) #17	ENSSBOG00000019051	CYSLTR2 (ENSSBOG00000025475) #18	FNDC3A (ENSSBOG00000026737) #19	MLNR (ENSSBOG00000035313) #20	CDADC1 (ENSSBOG00000025762) #22	CAB39L (ENSSBOG00000027469) #23	SETDB2 (ENSSBOG00000023249) #25	PHF11 (ENSSBOG00000034363) #26	RCBTB1 (ENSSBOG00000017490) #27	EBPL (ENSSBOG00000028545) #29	KPNA3 (ENSSBOG00000030689) #30	ENSSBOG00000030646	SPRYD7 (ENSSBOG00000031956) #31	TRIM13 (ENSSBOG00000020064) #32	KCNRG (ENSSBOG00000023070)	ENSSBOG00000025039
Marmoset	MODERN SPECIES		ENSCJAG00000077810	HTR2A (ENSCJAG00000060527) #10	ENSCJAG00000009278 #11	NUDT15 (ENSCJAG00000043795) #12	ENSCJAG00000040641	ENSCJAG00000009256 #13	ITM2B (ENSCJAG00000073561) #14	ENSCJAG00000074787	LPAR6 (ENSCJAG00000060429) #16	RB1 (ENSCJAG00000009076) #15	RCBTB2 (ENSCJAG00000009006) #17	ENSCJAG00000075551	ENSCJAG00000059197	FNDC3A (ENSCJAG00000008978) #19	MLNR (ENSCJAG00000071397) #20	CDADC1 (ENSCJAG00000008925) #22	CAB39L (ENSCJAG00000047061) #23	ENSCJAG00000080953	SETDB2 (ENSCJAG00000008864) #25	RCBTB1 (ENSCJAG00000008772) #27	ARL11 (ENSCJAG00000022614) #28	EBPL (ENSCJAG00000008764) #29	ENSCJAG00000044787 #30	SPRYD7 (ENSCJAG00000007818) #31	ENSCJAG00000073191	ENSCJAG00000076737	ENSCJAG00000040188	ENSCJAG00000077070	ENSCJAG00000052202	ENSCJAG00000087100	TRIM13 (ENSCJAG00000008633) #32
Mas night monkey	MODERN SPECIES	902	ENSANAG00000028654	ENSANAG00000025311 #11	NUDT15 (ENSANAG00000023666) #12	ENSANAG00000027167	ENSANAG00000026714 #13	ITM2B (ENSANAG00000029180) #14	ENSANAG00000011241	LPAR6 (ENSANAG00000016578) #16	RB1 (ENSANAG00000022056) #15	ENSANAG00000031593	RCBTB2 (ENSANAG00000023045) #17	ENSANAG00000013536	CYSLTR2 (ENSANAG00000024658) #18	FNDC3A (ENSANAG00000029046) #19	MLNR (ENSANAG00000037292) #20	CDADC1 (ENSANAG00000024556) #22	CAB39L (ENSANAG00000024473) #23
Tarsier	MODERN SPECIES	2864																CDADC1 (ENSTSYG00000004957) #22	CAB39L (ENSTSYG00000000990) #23	SETDB2 (ENSTSYG00000014051) #25	PHF11 (ENSTSYG00000010105) #26	RCBTB1 (ENSTSYG00000010141) #27
Strepsirrhini	ANCESTRAL SPECIES	27	ENSGT00710000106860	ENSGT00940000160585 #7	ENSGT00940000159528 #8	ENSGT00390000011864 #9	ENSGT01050000244937.a.a #10	ENSGT00390000010170.a.b #11	ENSGT00390000003338 #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #14	ENSGT00950000183202.b #15	ENSGT01040000240444.A.a.a.a.a #16	ENSGT00940000158925 #17	ENSGT00990000203619.B	ENSGT00940000159319 #19	ENSGT01100000263484.C.a #20	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #25	ENSGT00950000182865.b.a.b.b.b.a #26	ENSGT00940000155814 #27	ENSGT00940000162731 #28	ENSGT00530000063715.b #29	ENSGT01050000244891.C.c.b #30	ENSGT00390000011048 #31	ENSGT00940000159715 #32	ENSGT00940000161898	ENSGT00390000011737 #34	ENSGT00390000011439 #35	ENSGT00940000162114	ENSGT00390000003838	ENSGT00590000083134.a.a #36
Lemuriformes	ANCESTRAL SPECIES	18	ENSGT00490000043976	ENSGT00940000161558	ENSGT00390000010017	ENSGT00730000110966	ENSGT01050000244937.a.a #10	ENSGT00390000010170.a.b #11	ENSGT00390000003338 #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #14	ENSGT00950000183202.b #15	ENSGT01040000240444.A.a.a.a.a #16	ENSGT00940000158925 #17	ENSGT00990000203619.B	ENSGT00940000159319 #19	ENSGT01100000263484.C.a #20	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #25	ENSGT00950000182865.b.a.b.b.b.a #26	ENSGT00940000155814 #27	ENSGT00940000162731 #28	ENSGT00530000063715.b #29	ENSGT01050000244891.C.c.b #30	ENSGT00390000011048 #31	ENSGT00940000159715 #32	ENSGT00940000161898	ENSGT00390000011737 #34	ENSGT00390000011439 #35	ENSGT00940000162114	ENSGT00390000003838	ENSGT00590000083134.a.a #36
Lemuriformes_a	ANCESTRAL SPECIES	41	ENSGT00490000043976	ENSGT00940000161558	ENSGT00390000010017	ENSGT00730000110966	ENSGT01050000244937.a.a #10	ENSGT00390000010170.a.b #11	ENSGT00390000003338 #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #14	ENSGT00950000183202.b #15	ENSGT01040000240444.A.a.a.a.a #16	ENSGT00940000158925 #17	ENSGT00990000203619.B	ENSGT00940000159319 #19	ENSGT01100000263484.C.a #20	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #25	ENSGT00950000182865.b.a.b.b.b.a #26	ENSGT00940000155814 #27	ENSGT00940000162731 #28	ENSGT00530000063715.b #29	ENSGT01050000244891.C.c.b #30	ENSGT00390000011048 #31	ENSGT00940000159715 #32	ENSGT00940000161898	ENSGT00390000011737 #34	ENSGT00390000011439 #35	ENSGT00940000162114	ENSGT00390000003838	ENSGT00590000083134.a.a #36
Coquerels sifaka	MODERN SPECIES	87									SUCLA2 (ENSPCOG00000018242) #11	NUDT15 (ENSPCOG00000014340) #12	ITM2B (ENSPCOG00000018351) #14	RB1 (ENSPCOG00000017056) #15	RCBTB2 (ENSPCOG00000021825) #17	FNDC3A (ENSPCOG00000016565) #19	MLNR (ENSPCOG00000024564) #20	CDADC1 (ENSPCOG00000010000) #22	CAB39L (ENSPCOG00000022177) #23	SETDB2 (ENSPCOG00000017644) #25	PHF11 (ENSPCOG00000025902) #26	RCBTB1 (ENSPCOG00000023593) #27	EBPL (ENSPCOG00000017361) #29	KPNA3 (ENSPCOG00000018104) #30	SPRYD7 (ENSPCOG00000014473) #31	KCNRG (ENSPCOG00000018995)	DLEU7 (ENSPCOG00000026956) #34	RNASEH2B (ENSPCOG00000026623) #35	ENSPCOG00000027037	C13orf42 (ENSPCOG00000021956)	FAM124A (ENSPCOG00000017096) #36	SERPINE3 (ENSPCOG00000024487) #37	INTS6 (ENSPCOG00000018512)
Greater bamboo lemur	MODERN SPECIES	716	ENSPSMG00000017359	FOXO1 (ENSPSMG00000017352)	MRPS31 (ENSPSMG00000017347)	SLC25A15 (ENSPSMG00000017332)	HTR2A (ENSPSMG00000017318) #10	SUCLA2 (ENSPSMG00000017268) #11	NUDT15 (ENSPSMG00000017202) #12	MED4 (ENSPSMG00000017195) #13	ITM2B (ENSPSMG00000017177) #14	LPAR6 (ENSPSMG00000017152) #16	RB1 (ENSPSMG00000017129) #15	RCBTB2 (ENSPSMG00000017070) #17	ENSPSMG00000017007	FNDC3A (ENSPSMG00000016962) #19	MLNR (ENSPSMG00000016738) #20	CDADC1 (ENSPSMG00000016735) #22	ENSPSMG00000016725	CAB39L (ENSPSMG00000016717) #23	SETDB2 (ENSPSMG00000016698) #25	PHF11 (ENSPSMG00000016617) #26	RCBTB1 (ENSPSMG00000016600) #27	ARL11 (ENSPSMG00000016576) #28	EBPL (ENSPSMG00000016569) #29	KPNA3 (ENSPSMG00000016546) #30	SPRYD7 (ENSPSMG00000016482) #31	TRIM13 (ENSPSMG00000016458) #32	KCNRG (ENSPSMG00000016450)	ENSPSMG00000016440	ENSPSMG00000016385	DLEU7 (ENSPSMG00000016383) #34	RNASEH2B (ENSPSMG00000016318) #35
Mouse lemur	MODERN SPECIES	4	NHLRC3 (ENSMICG00000010249)	LHFPL6 (ENSMICG00000001594)	COG6 (ENSMICG00000001598)	FOXO1 (ENSMICG00000028457)	MRPS31 (ENSMICG00000006449)	SLC25A15 (ENSMICG00000007218)	HTR2A (ENSMICG00000043800) #10	SUCLA2 (ENSMICG00000009577) #11	NUDT15 (ENSMICG00000042635) #12	MED4 (ENSMICG00000009590) #13	ITM2B (ENSMICG00000001759) #14	RB1 (ENSMICG00000001747) #15	RCBTB2 (ENSMICG00000001761) #17	FNDC3A (ENSMICG00000009814) #19	MLNR (ENSMICG00000045079) #20	CDADC1 (ENSMICG00000017527) #22	CAB39L (ENSMICG00000017528) #23	SETDB2 (ENSMICG00000012641) #25	PHF11 (ENSMICG00000006622) #26	RCBTB1 (ENSMICG00000006630) #27	ARL11 (ENSMICG00000006637) #28	EBPL (ENSMICG00000006640) #29	KPNA3 (ENSMICG00000006647) #30	SPRYD7 (ENSMICG00000012835) #31	KCNRG (ENSMICG00000042205)	DLEU7 (ENSMICG00000031262) #34	RNASEH2B (ENSMICG00000000528) #35	ENSMICG00000008092	C13orf42 (ENSMICG00000047001)	FAM124A (ENSMICG00000008100) #36	SERPINE3 (ENSMICG00000029125) #37
Bushbaby	MODERN SPECIES	336													ENSOGAG00000013320	FNDC3A (ENSOGAG00000009258) #19	MLNR (ENSOGAG00000027872) #20	CDADC1 (ENSOGAG00000016751) #22	CAB39L (ENSOGAG00000016755) #23	SETDB2 (ENSOGAG00000005339) #25	PHF11 (ENSOGAG00000005342) #26	RCBTB1 (ENSOGAG00000005344) #27	ARL11 (ENSOGAG00000005346) #28	EBPL (ENSOGAG00000005348) #29	ENSOGAG00000031231	THSD1 (ENSOGAG00000012110)	VPS36 (ENSOGAG00000011312)	CKAP2 (ENSOGAG00000008428)	NEK3 (ENSOGAG00000008424)	ENSOGAG00000032365	ALG11 (ENSOGAG00000028195)	ATP7B (ENSOGAG00000006683)	CCDC70 (ENSOGAG00000028299)
Euarchontoglires_A	ANCESTRAL SPECIES	21	ENSGT00710000106860	ENSGT00940000160585 #7	ENSGT00940000159528 #8	ENSGT00390000011864 #9	ENSGT01050000244937.a.a #10	ENSGT00390000010170.a.b #11	ENSGT00390000003338 #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #14	ENSGT00950000183202.b #15	ENSGT01040000240444.A.a.a.a.a #16	ENSGT00940000158925 #17	ENSGT01100000263536.B.c.a #18	ENSGT00940000159319 #19	ENSGT01100000263484.C.a #20	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #25	ENSGT00950000182865.b.a.b.b.b.a #26	ENSGT00940000155814 #27	ENSGT00940000162731 #28	ENSGT00530000063715.b #29	ENSGT01050000244891.C.c.b #30	ENSGT00390000011048 #31	ENSGT00940000159715 #32	ENSGT00940000161898	ENSGT00390000011737 #34	ENSGT00390000011439 #35	ENSGT00940000162114	ENSGT00390000003838	ENSGT00590000083134.a.a #36
Tree shrew	MODERN SPECIES	6089																CDADC1 (ENSTBEG00000009906) #22	CAB39L (ENSTBEG00000009981) #23
Glires	ANCESTRAL SPECIES	22	ENSGT00710000106860	ENSGT00940000160585 #7	ENSGT00940000159528 #8	ENSGT00390000011864 #9	ENSGT01050000244937.a.a #10	ENSGT00390000010170.a.b #11	ENSGT00390000003338 #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #14	ENSGT00950000183202.b #15	ENSGT01040000240444.A.a.a.a.a #16	ENSGT00940000158925 #17	ENSGT01100000263536.B.c.a #18	ENSGT00940000159319 #19	ENSGT01100000263484.C.a #20	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #25	ENSGT00950000182865.b.a.b.b.b.a #26	ENSGT00940000155814 #27	ENSGT00940000162731 #28	ENSGT00530000063715.b #29	ENSGT01050000244891.C.c.b #30	ENSGT00390000011048 #31	ENSGT00940000159715 #32	ENSGT00940000161898	ENSGT00390000011737 #34	ENSGT00390000011439 #35	ENSGT00940000162114	ENSGT00390000003838	ENSGT00590000083134.a.a #36
Lagomorpha	ANCESTRAL SPECIES	100			ENSGT00940000159528 #8	ENSGT00390000011864 #9	ENSGT01050000244937.a.a #10	ENSGT00390000010170.a.b #11	ENSGT00390000003338 #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #14	ENSGT00950000183202.b #15	ENSGT01040000240444.A.a.a.a.a #16	ENSGT00940000158925 #17	ENSGT01100000263536.B.c.a #18	ENSGT00940000159319 #19	ENSGT01100000263484.C.a #20	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #25	ENSGT00950000182865.b.a.b.b.b.a #26	ENSGT00940000155814 #27	ENSGT00940000162731 #28	ENSGT00530000063715.b #29	ENSGT01050000244891.C.c.b #30	ENSGT00390000011048 #31	ENSGT00940000159715 #32	ENSGT00940000161898	ENSGT00390000011737 #34	ENSGT00390000011439 #35	ENSGT00390000003838	ENSGT00590000083134.a.a #36	ENSGT00940000160941 #37
Rabbit	MODERN SPECIES	438	SUCLA2 (ENSOCUG00000025889) #11	NUDT15 (ENSOCUG00000007439) #12	MED4 (ENSOCUG00000012327) #13	ITM2B (ENSOCUG00000025116) #14	RB1 (ENSOCUG00000016404) #15	LPAR6 (ENSOCUG00000002383) #16	RCBTB2 (ENSOCUG00000016428) #17	ENSOCUG00000033452	ENSOCUG00000024145	ENSOCUG00000036809	ENSOCUG00000039273	ENSOCUG00000023872	ENSOCUG00000027072	FNDC3A (ENSOCUG00000014679) #19	MLNR (ENSOCUG00000014737) #20	CDADC1 (ENSOCUG00000014743) #22	CAB39L (ENSOCUG00000008239) #23	ENSOCUG00000009013	SETDB2 (ENSOCUG00000003755) #25	RCBTB1 (ENSOCUG00000003767) #27	PHF11 (ENSOCUG00000003761) #26	ENSOCUG00000006778 #29	ARL11 (ENSOCUG00000003013) #28	KPNA3 (ENSOCUG00000006781) #30	SPRYD7 (ENSOCUG00000027577) #31	TRIM13 (ENSOCUG00000003083) #32	KCNRG (ENSOCUG00000003085)	ENSOCUG00000002718	DLEU7 (ENSOCUG00000003938) #34	RNASEH2B (ENSOCUG00000008904) #35	ENSOCUG00000033915
Rodentia	ANCESTRAL SPECIES	22	ENSGT00710000106860	ENSGT00940000160585 #7	ENSGT00940000159528 #8	ENSGT00390000011864 #9	ENSGT01050000244937.a.a #10	ENSGT00390000010170.a.b #11	ENSGT00390000003338 #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #14	ENSGT00950000183202.b #15	ENSGT01040000240444.A.a.a.a.a #16	ENSGT00940000158925 #17	ENSGT01100000263536.B.c.a #18	ENSGT00940000159319 #19	ENSGT01100000263484.C.a #20	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #25	ENSGT00950000182865.b.a.b.b.b.a #26	ENSGT00940000155814 #27	ENSGT00940000162731 #28	ENSGT00530000063715.b #29	ENSGT01050000244891.C.c.b #30	ENSGT00390000011048 #31	ENSGT00940000159715 #32	ENSGT00940000161898	ENSGT00390000011737 #34	ENSGT00390000011439 #35	ENSGT00940000162114	ENSGT00390000003838	ENSGT00590000083134.a.a #36
Rodentia_B	ANCESTRAL SPECIES	25	ENSGT00710000106860	ENSGT00940000160585 #7	ENSGT00940000159528 #8	ENSGT00390000011864 #9	ENSGT01050000244937.a.a #10	ENSGT00390000010170.a.b #11	ENSGT00390000003338 #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #14	ENSGT01040000240444.A.a.a.a.a #16	ENSGT00950000183202.b #15	ENSGT00940000158925 #17	ENSGT01100000263536.B.c.a #18	ENSGT00940000159319 #19	ENSGT01100000263484.C.a #20	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #25	ENSGT00950000182865.b.a.b.b.b.a #26	ENSGT00940000155814 #27	ENSGT00940000162731 #28	ENSGT00530000063715.b #29	ENSGT01050000244891.C.c.b #30	ENSGT00390000011048 #31	ENSGT00940000159715 #32	ENSGT00940000161898	ENSGT00390000011737 #34	ENSGT00390000011439 #35	ENSGT00940000162114	ENSGT00390000003838	ENSGT00590000083134.a.a #36
Kangaroo rat	MODERN SPECIES	320	ENSDORG00000024657	Lrch1 (ENSDORG00000013992) #8	Esd (ENSDORG00000013997) #9	Htr2a (ENSDORG00000029019) #10	Sucla2 (ENSDORG00000010319) #11	Nudt15 (ENSDORG00000003751) #12	Med4 (ENSDORG00000024480) #13	Itm2b (ENSDORG00000025543) #14	Rb1 (ENSDORG00000013995) #15	Lpar6 (ENSDORG00000013998) #16	Rcbtb2 (ENSDORG00000013999) #17	ENSDORG00000016215 #18	ENSDORG00000029762	Fndc3a (ENSDORG00000000383) #19	ENSDORG00000023605 #20	Cdadc1 (ENSDORG00000000386) #22	Ift88 (ENSDORG00000001573)	Cryl1 (ENSDORG00000011355)	ENSDORG00000030047	Gjb6 (ENSDORG00000015151)	Gjb2 (ENSDORG00000023482)	Gja3 (ENSDORG00000012415)	Zmym2 (ENSDORG00000014720)	ENSDORG00000024933	Pspc1 (ENSDORG00000016050)	ENSDORG00000023318	Parp4 (ENSDORG00000029090)	ENSDORG00000025901	Cenpj (ENSDORG00000016674)	Atp12a (ENSDORG00000001519)	ENSDORG00000027898
Myomorpha	ANCESTRAL SPECIES	46																ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #25	ENSGT00950000182865.b.a.b.b.b.a #26	ENSGT00940000155814 #27	ENSGT00940000162731 #28	ENSGT00530000063715.b #29	ENSGT01050000244891.C.c.b #30	ENSGT00390000011048 #31	ENSGT00940000159715 #32	ENSGT00940000161898	ENSGT00390000011737 #34	ENSGT00390000011439 #35	ENSGT00940000162114	ENSGT00390000003838	ENSGT00590000083134.a.a #36
Lesser Egyptian jerboa	MODERN SPECIES	73																Cdadc1 (ENSJJAG00000015627) #22	Cab39l (ENSJJAG00000014207) #23	Setdb2 (ENSJJAG00000011079) #25	ENSJJAG00000017145 #26	Rcbtb1 (ENSJJAG00000016110) #27	ENSJJAG00000013107	Arl11 (ENSJJAG00000001803) #28	Ebpl (ENSJJAG00000014825) #29	Kpna3 (ENSJJAG00000017828) #30	ENSJJAG00000018077 #31	Trim13 (ENSJJAG00000012858) #32	Dleu7 (ENSJJAG00000015749) #34	Rnaseh2b (ENSJJAG00000013335) #35	Gm4131 (ENSJJAG00000020940)	Fam124a (ENSJJAG00000017056) #36	Serpine3 (ENSJJAG00000018445) #37
Muroidea	ANCESTRAL SPECIES	25	ENSGT00940000160956	ENSGT00840000130852	ENSGT00940000159187	ENSGT00390000016695	ENSGT00940000153259.a.a.b	ENSGT00950000183171.B	ENSGT00730000111659	ENSGT00940000154936.qb	ENSGT00940000154103.a	ENSGT00940000166713	ENSGT00530000063529.A	ENSGT00940000158055	ENSGT00730000111111	ENSGT00940000157332	ENSGT00940000157443	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #25	ENSGT00950000182865.b.a.b.b.b.a #26	ENSGT00940000155814 #27	ENSGT00940000162731 #28	ENSGT00530000063715.b #29	ENSGT01050000244891.C.c.b #30	ENSGT00390000011048 #31	ENSGT00940000159715 #32	ENSGT00940000161898	ENSGT00390000011737 #34	ENSGT00390000011439 #35	ENSGT00940000162114	ENSGT00390000003838	ENSGT00590000083134.a.a #36
Upper Galilee mountains blind mole rat	MODERN SPECIES	1877	ENSNGAG00000020670	Sgcg (ENSNGAG00000014500)	Sacs (ENSNGAG00000018196)	Tnfrsf19 (ENSNGAG00000001020)	Mipep (ENSNGAG00000018168)	ENSNGAG00000002512	C1qtnf9 (ENSNGAG00000019211)	ENSNGAG00000013640	ENSNGAG00000019843	Amer2 (ENSNGAG00000018129)	Mtmr6 (ENSNGAG00000010192)	Gm49336 (ENSNGAG00000014286)	ENSNGAG00000015895	ENSNGAG00000013901	Shisa2 (ENSNGAG00000011290)	Cdadc1 (ENSNGAG00000002869) #22	Cab39l (ENSNGAG00000000478) #23	Setdb2 (ENSNGAG00000013911) #25	Rcbtb1 (ENSNGAG00000014551) #27	Arl11 (ENSNGAG00000004637) #28	Ebpl (ENSNGAG00000006650) #29	Kpna3 (ENSNGAG00000017215) #30	Spryd7 (ENSNGAG00000016929) #31	Trim13 (ENSNGAG00000012202) #32	Kcnrg (ENSNGAG00000012047)	Dleu7 (ENSNGAG00000000600) #34	ENSNGAG00000000615 #35	Gucy1b2 (ENSNGAG00000005460)	Gm4131 (ENSNGAG00000018345)	Fam124a (ENSNGAG00000017750) #36	Serpine3 (ENSNGAG00000001093) #37
Muroidea_A	ANCESTRAL SPECIES	10	ENSGT01050000244891.C.c.b #30	ENSGT00530000063715.b #29	ENSGT00940000162731 #28	ENSGT00940000159187	ENSGT00390000016695	ENSGT00940000153259.a.a.b	ENSGT00950000183171.B	ENSGT00730000111659	ENSGT00940000154936.qb	ENSGT00940000154103.a	ENSGT00530000063529.A	ENSGT00940000158055	ENSGT00730000111111	ENSGT00940000157332	ENSGT00940000157443	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #25	ENSGT00950000182865.b.a.b.b.b.a #26	ENSGT00940000155814 #27	ENSGT00840000130852.b	ENSGT01050000247125	ENSGT00840000130852.a.a	ENSGT00940000160956	ENSGT00950000183079.A.b.c.b	ENSGT00940000153716.A	ENSGT00390000008171	ENSGT00500000045005	ENSGT00390000003152.j	ENSGT00940000159161	ENSGT00940000153139.A
Cricetidae	ANCESTRAL SPECIES	15	ENSGT01050000244891.C.c.b #30	ENSGT00530000063715.b #29	ENSGT00940000162731 #28	ENSGT00940000159187	ENSGT00390000016695	ENSGT00940000153259.a.a.b	ENSGT00950000183171.B	ENSGT00730000111659	ENSGT00940000154936.qb	ENSGT00940000154103.a	ENSGT00530000063529.A	ENSGT00940000158055	ENSGT00730000111111	ENSGT00940000157332	ENSGT00940000157443	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #25	ENSGT00950000182865.b.a.b.b.b.a #26	ENSGT00940000155814 #27	ENSGT00840000130852.b	ENSGT01050000247125	ENSGT00840000130852.a.a	ENSGT00940000160956	ENSGT00950000183079.A.b.c.b	ENSGT00940000153716.A	ENSGT00390000008171	ENSGT00500000045005	ENSGT00390000003152.j	ENSGT00940000159161	ENSGT00940000153139.A
Cricetidae_B	ANCESTRAL SPECIES	11	ENSGT01050000244891.C.c.b #30	ENSGT00530000063715.b #29	ENSGT00940000162731 #28	ENSGT00940000159187	ENSGT00390000016695	ENSGT00940000153259.a.a.b	ENSGT00950000183171.B	ENSGT00730000111659	ENSGT00940000154936.qb	ENSGT00940000154103.a	ENSGT00530000063529.A	ENSGT00940000158055	ENSGT00730000111111	ENSGT00940000157332	ENSGT00940000157443	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #25	ENSGT00950000182865.b.a.b.b.b.a #26	ENSGT00940000155814 #27	ENSGT00840000130852.b	ENSGT00840000130852.a.a	ENSGT00940000160956	ENSGT00950000183079.A.b.c.b	ENSGT00940000153716.A	ENSGT00390000008171	ENSGT00500000045005	ENSGT00390000003152.j	ENSGT00940000159161	ENSGT00940000153139.A	ENSGT00390000016366
Northern American deer mouse	MODERN SPECIES	22	ENSPEMG00000030665	Sgcg (ENSPEMG00000019438)	Sacs (ENSPEMG00000000064)	ENSPEMG00000024354	Tnfrsf19 (ENSPEMG00000008508)	Mipep (ENSPEMG00000020216)	ENSPEMG00000027608	C1qtnf9 (ENSPEMG00000019616)	Spata13 (ENSPEMG00000020262)	Amer2 (ENSPEMG00000025065)	Mtmr6 (ENSPEMG00000019883)	Gm49336 (ENSPEMG00000019398)	ENSPEMG00000025963	Atp8a2 (ENSPEMG00000019433)	Shisa2 (ENSPEMG00000030541)	Cdadc1 (ENSPEMG00000020295) #22	Cab39l (ENSPEMG00000012244) #23	Setdb2 (ENSPEMG00000020697) #25	ENSPEMG00000020517 #26	Rcbtb1 (ENSPEMG00000012943) #27	ENSPEMG00000015984	Fgf9 (ENSPEMG00000028908)	Micu2 (ENSPEMG00000013668)	Zdhhc20 (ENSPEMG00000020348)	Mrpl57 (ENSPEMG00000003727)	Ska3 (ENSPEMG00000020939)	ENSPEMG00000030110	Lats2 (ENSPEMG00000000178)	Xpo4 (ENSPEMG00000017255)	Eef1akmt1 (ENSPEMG00000031126)	Il17d (ENSPEMG00000022121)
Prairie vole	MODERN SPECIES	4	Arl11 (ENSMOCG00000006454) #28	Sgcg (ENSMOCG00000021418)	Sacs (ENSMOCG00000006049)	Tnfrsf19 (ENSMOCG00000018683)	Mipep (ENSMOCG00000020940)	C1qtnf9 (ENSMOCG00000000316)	ENSMOCG00000000624	Spata13 (ENSMOCG00000001538)	Amer2 (ENSMOCG00000019134)	Mtmr6 (ENSMOCG00000022575)	Gm49336 (ENSMOCG00000003936)	ENSMOCG00000014830	ENSMOCG00000019987	Atp8a2 (ENSMOCG00000015692)	Shisa2 (ENSMOCG00000020664)	Cdadc1 (ENSMOCG00000002433) #22	Cab39l (ENSMOCG00000016772) #23	Setdb2 (ENSMOCG00000021987) #25	ENSMOCG00000008534 #26	ENSMOCG00000006162	Rcbtb1 (ENSMOCG00000015644) #27	ENSMOCG00000021827	ENSMOCG00000022640	Fgf9 (ENSMOCG00000023005)	Micu2 (ENSMOCG00000007162)	ENSMOCG00000016347	Zdhhc20 (ENSMOCG00000020906)	Mrpl57 (ENSMOCG00000014838)	Ska3 (ENSMOCG00000017435)	ENSMOCG00000018977	ENSMOCG00000019590
Cricetinae	ANCESTRAL SPECIES	18	ENSGT01050000244891.C.c.b #30	ENSGT00530000063715.b #29	ENSGT00940000162731 #28	ENSGT00940000159187	ENSGT00390000016695	ENSGT00940000153259.a.a.b	ENSGT00950000183171.B	ENSGT00730000111659	ENSGT00940000154936.qb	ENSGT00940000154103.a	ENSGT00530000063529.A	ENSGT00940000158055	ENSGT00730000111111	ENSGT00940000157332	ENSGT00940000157443	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #25	ENSGT00950000182865.b.a.b.b.b.a #26	ENSGT00940000155814 #27	ENSGT00840000130852.b	ENSGT01050000247125	ENSGT00940000160956	ENSGT00950000183079.A.b.c.b	ENSGT00940000153716.A	ENSGT00390000008171	ENSGT00500000045005	ENSGT00390000003152.j	ENSGT00940000159161	ENSGT00940000153139.A	ENSGT00390000016366
Golden Hamster	MODERN SPECIES	670	Rnaseh2b (ENSMAUG00000016520) #35	ENSMAUG00000009681	Trim13 (ENSMAUG00000003724) #32	Spryd7 (ENSMAUG00000017680) #31	Kpna3 (ENSMAUG00000020387) #30	Sgcg (ENSMAUG00000019618)	Sacs (ENSMAUG00000006270)	Tnfrsf19 (ENSMAUG00000019786)	Mipep (ENSMAUG00000003876)	C1qtnf9 (ENSMAUG00000006985)	Amer2 (ENSMAUG00000007607)	Mtmr6 (ENSMAUG00000015618)	ENSMAUG00000010191	ENSMAUG00000016296	Shisa2 (ENSMAUG00000018919)	Cdadc1 (ENSMAUG00000016628) #22	Cab39l (ENSMAUG00000021570) #23	Setdb2 (ENSMAUG00000012871) #25	ENSMAUG00000010572 #26	Rcbtb1 (ENSMAUG00000019433) #27	Fgf9 (ENSMAUG00000019224)	Micu2 (ENSMAUG00000012604)	Zdhhc20 (ENSMAUG00000001184)	Mrpl57 (ENSMAUG00000012206)	Lats2 (ENSMAUG00000020573)	ENSMAUG00000004111	Eef1akmt1 (ENSMAUG00000000714)	Ift88 (ENSMAUG00000013897)	Cryl1 (ENSMAUG00000008825)	Gjb6 (ENSMAUG00000010441)	Gjb2 (ENSMAUG00000021056)
Chinese hamster chok1gshd	MODERN SPECIES	3	Ebpl (ENSCGRG00001001118) #29	Arl11 (ENSCGRG00001010023) #28	Sgcg (ENSCGRG00001017405)	Sacs (ENSCGRG00001022048)	Tnfrsf19 (ENSCGRG00001001233)	Mipep (ENSCGRG00001017795)	ENSCGRG00001024481	C1qtnf9 (ENSCGRG00001022548)	Spata13 (ENSCGRG00001006938)	Amer2 (ENSCGRG00001007624)	Mtmr6 (ENSCGRG00001014238)	Gm49336 (ENSCGRG00001015740)	ENSCGRG00001018603	Atp8a2 (ENSCGRG00001009592)	Shisa2 (ENSCGRG00001022075)	Cdadc1 (ENSCGRG00001023418) #22	Cab39l (ENSCGRG00001018025) #23	Setdb2 (ENSCGRG00001011194) #25	ENSCGRG00001017420 #26	ENSCGRG00001017298 #27	ENSCGRG00001016056	ENSCGRG00001000235	Fgf9 (ENSCGRG00001000618)	Micu2 (ENSCGRG00001019591)	Zdhhc20 (ENSCGRG00001016155)	Mrpl57 (ENSCGRG00001003685)	Ska3 (ENSCGRG00001020376)	ENSCGRG00001017316	Lats2 (ENSCGRG00001020388)	Xpo4 (ENSCGRG00001004627)	Eef1akmt1 (ENSCGRG00001016674)
Murinae	ANCESTRAL SPECIES	16	ENSGT01050000244891.C.c.b #30	ENSGT00530000063715.b #29	ENSGT00940000162731 #28	ENSGT00940000159187	ENSGT00390000016695	ENSGT00940000153259.a.a.b	ENSGT00950000183171.B	ENSGT00730000111659	ENSGT00940000154936.qb	ENSGT00940000154103.a	ENSGT00530000063529.A	ENSGT00940000158055	ENSGT00730000111111	ENSGT00940000157332	ENSGT00940000157443	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #25	ENSGT00950000182865.b.a.b.b.b.a.e #26	ENSGT00950000182865.b.a.b.b.b.a.f #26	ENSGT00940000155814 #27	ENSGT00840000130852.b	ENSGT01050000247125	ENSGT00840000130852.a.a	ENSGT00940000160956	ENSGT00950000183079.A.b.c.b	ENSGT00940000153716.A	ENSGT00390000008171	ENSGT00500000045005	ENSGT00390000003152.j	ENSGT00940000159161
Mus	ANCESTRAL SPECIES	8	ENSGT00530000063715.b #29	ENSGT00940000162731 #28	ENSGT00940000159187	ENSGT00390000016695	ENSGT00940000153259.a.a.b	ENSGT00950000183171.B	ENSGT00940000154936.qb	ENSGT00730000111659	ENSGT00940000154103.a	ENSGT00530000063529.A	ENSGT00940000158055	ENSGT00730000111111	ENSGT00860000136284	ENSGT00940000157332	ENSGT00940000157443	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #25	ENSGT00950000182865.b.a.b.b.b.a.e.a #26	ENSGT00950000182865.b.a.b.b.b.a.f #26	ENSGT00940000155814 #27	ENSGT00840000130852.b	ENSGT00840000130852.a.a	ENSGT00940000160956	ENSGT00950000183079.A.b.c.b	ENSGT00940000153716.A	ENSGT00390000008171	ENSGT00500000045005	ENSGT00390000003152.j	ENSGT00940000159161	ENSGT00940000153139.A
Mus_A	ANCESTRAL SPECIES	12	ENSGT00530000063715.b #29	ENSGT00940000162731 #28	ENSGT00940000159187	ENSGT00390000016695	ENSGT00940000153259.a.a.b	ENSGT00950000183171.B	ENSGT00940000154936.qb	ENSGT00730000111659	ENSGT00940000154103.a	ENSGT00530000063529.A	ENSGT00940000158055	ENSGT00730000111111	ENSGT00860000136284	ENSGT00940000157332	ENSGT00940000157443	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #25	ENSGT00950000182865.b.a.b.b.b.a.e.a #26	ENSGT00950000182865.b.a.b.b.b.a.f.b #26	ENSGT00940000155814 #27	ENSGT00840000130852.b	ENSGT00840000130852.a.a	ENSGT00940000160956	ENSGT00950000183079.A.b.c.b	ENSGT00940000153716.A	ENSGT00390000008171	ENSGT00500000045005	ENSGT00390000003152.j	ENSGT00940000159161	ENSGT00940000153139.A
Mus_B	ANCESTRAL SPECIES	11	ENSGT00530000063715.b #29	ENSGT00940000162731 #28	ENSGT00940000159187	ENSGT00390000016695	ENSGT00940000153259.a.a.b	ENSGT00950000183171.B	ENSGT00940000154936.qb	ENSGT00730000111659	ENSGT00940000154103.a	ENSGT00530000063529.A	ENSGT00940000158055	ENSGT00730000111111	ENSGT00860000136284	ENSGT00940000157332	ENSGT00940000157443	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #25	ENSGT00950000182865.b.a.b.b.b.a.e.a #26	ENSGT00950000182865.b.a.b.b.b.a.f.b #26	ENSGT00940000155814 #27	ENSGT00840000130852.b	ENSGT00840000130852.a.a	ENSGT00940000160956	ENSGT00950000183079.A.b.c.b	ENSGT00940000153716.A	ENSGT00390000008171	ENSGT00500000045005	ENSGT00390000003152.j	ENSGT00940000159161	ENSGT00940000153139.A
Mus_C	ANCESTRAL SPECIES	20	ENSGT00530000063715.b #29	ENSGT00940000162731 #28	ENSGT00940000159187	ENSGT00390000016695	ENSGT00940000153259.a.a.b	ENSGT00950000183171.B	ENSGT00940000154936.qb	ENSGT00730000111659	ENSGT00940000154103.a	ENSGT00530000063529.A	ENSGT00940000158055	ENSGT00730000111111	ENSGT00860000136284	ENSGT00940000157332	ENSGT00940000157443	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #25	ENSGT00950000182865.b.a.b.b.b.a.e.a #26	ENSGT00950000182865.b.a.b.b.b.a.f.b #26	ENSGT00940000155814 #27	ENSGT00840000130852.b	ENSGT00840000130852.a.a	ENSGT00940000160956	ENSGT00950000183079.A.b.c.b	ENSGT00940000153716.A	ENSGT00390000008171	ENSGT00500000045005	ENSGT00390000003152.j	ENSGT00940000159161	ENSGT00940000153139.A
Steppe mouse	MODERN SPECIES	3236	Sacs (ENSMSIG00000024830)	ENSMSIG00000024904	ENSMSIG00000024911	Tnfrsf19 (ENSMSIG00000024914)	Mipep (ENSMSIG00000024958)	C1qtnf9 (ENSMSIG00000024999)	ENSMSIG00000025002	Spata13 (ENSMSIG00000025007)	ENSMSIG00000025098	Mtmr6 (ENSMSIG00000025110)	Gm49336 (ENSMSIG00000025212)	Atp8a2 (ENSMSIG00000025342)	ENSMSIG00000025497	ENSMSIG00000025501	Shisa2 (ENSMSIG00000025508)	Cdadc1 (ENSMSIG00000025526) #22	Cab39l (ENSMSIG00000026112) #23	ENSMSIG00000026181 #25	ENSMSIG00000026348
spretus	MODERN SPECIES	5	Kpna3 (MGP_SPRETEiJ_G0020276) #30	Ebpl (MGP_SPRETEiJ_G0020275) #29	Arl11 (MGP_SPRETEiJ_G0020274) #28	Sgcg (MGP_SPRETEiJ_G0020273)	Sacs (MGP_SPRETEiJ_G0020272)	Tnfrsf19 (MGP_SPRETEiJ_G0020271)	Mipep (MGP_SPRETEiJ_G0020270)	C1qtnf9 (MGP_SPRETEiJ_G0020269)	Spata13 (MGP_SPRETEiJ_G0020268)	Amer2 (MGP_SPRETEiJ_G0020267)	Mtmr6 (MGP_SPRETEiJ_G0020266)	Gm49336 (MGP_SPRETEiJ_G0020265)	MGP_SPRETEiJ_G0020264	Atp8a2 (MGP_SPRETEiJ_G0020263)	Shisa2 (MGP_SPRETEiJ_G0020262)	Cdadc1 (MGP_SPRETEiJ_G0020261) #22	Cab39l (MGP_SPRETEiJ_G0020260) #23	Setdb2 (MGP_SPRETEiJ_G0020259) #25	MGP_SPRETEiJ_G0020258 #26	MGP_SPRETEiJ_G0020257 #26	MGP_SPRETEiJ_G0020256 #27	MGP_SPRETEiJ_G0020255	1700129C05Rik (MGP_SPRETEiJ_G0020254)	Fgf9 (MGP_SPRETEiJ_G0020253)	Micu2 (MGP_SPRETEiJ_G0020252)	Zdhhc20 (MGP_SPRETEiJ_G0020251)	Mrpl57 (MGP_SPRETEiJ_G0020250)	Ska3 (MGP_SPRETEiJ_G0020249)	MGP_SPRETEiJ_G0020248	Lats2 (MGP_SPRETEiJ_G0020247)	Xpo4 (MGP_SPRETEiJ_G0020246)
Mouse	MODERN SPECIES	5	Spryd7 (ENSMUSG00000021930) #31	Kpna3 (ENSMUSG00000021929) #30	Ebpl (ENSMUSG00000021928) #29	Arl11 (ENSMUSG00000043157) #28	Sgcg (ENSMUSG00000035296)	Sacs (ENSMUSG00000048279)	Tnfrsf19 (ENSMUSG00000060548)	Mipep (ENSMUSG00000021993)	C1qtnf9 (ENSMUSG00000071347)	Spata13 (ENSMUSG00000021990)	Amer2 (ENSMUSG00000021986)	Mtmr6 (ENSMUSG00000021987)	Gm49336 (ENSMUSG00000114797)	Atp8a2 (ENSMUSG00000021983)	Shisa2 (ENSMUSG00000044461)	Cdadc1 (ENSMUSG00000021982) #22	Cab39l (ENSMUSG00000021981) #23	Setdb2 (ENSMUSG00000071350) #25	Phf11c (ENSMUSG00000091144) #26	Phf11d (ENSMUSG00000068245) #26	Phf11b (ENSMUSG00000091649) #26	Phf11a (ENSMUSG00000044703) #26	Rcbtb1 (ENSMUSG00000035469) #27	1700129C05Rik (ENSMUSG00000021977)	Fgf9 (ENSMUSG00000021974)	Micu2 (ENSMUSG00000021973)	Zdhhc20 (ENSMUSG00000021969)	Mrpl57 (ENSMUSG00000021967)	Ska3 (ENSMUSG00000021965)	Sap18 (ENSMUSG00000021963)	Lats2 (ENSMUSG00000021959)
Ryukyu mouse	MODERN SPECIES	5	Kpna3 (MGP_CAROLIEiJ_G0019384) #30	Ebpl (MGP_CAROLIEiJ_G0019383) #29	Arl11 (MGP_CAROLIEiJ_G0019382) #28	Sgcg (MGP_CAROLIEiJ_G0019381)	Sacs (MGP_CAROLIEiJ_G0019380)	Tnfrsf19 (MGP_CAROLIEiJ_G0019379)	Mipep (MGP_CAROLIEiJ_G0019378)	C1qtnf9 (MGP_CAROLIEiJ_G0019377)	Spata13 (MGP_CAROLIEiJ_G0019376)	Amer2 (MGP_CAROLIEiJ_G0019375)	Mtmr6 (MGP_CAROLIEiJ_G0019374)	Gm49336 (MGP_CAROLIEiJ_G0019373)	MGP_CAROLIEiJ_G0019372	Atp8a2 (MGP_CAROLIEiJ_G0019371)	Shisa2 (MGP_CAROLIEiJ_G0019370)	Cdadc1 (MGP_CAROLIEiJ_G0019369) #22	Cab39l (MGP_CAROLIEiJ_G0019368) #23	Setdb2 (MGP_CAROLIEiJ_G0019367) #25	MGP_CAROLIEiJ_G0019366 #26	MGP_CAROLIEiJ_G0019362 ##26	MGP_CAROLIEiJ_G0019365 #26	MGP_CAROLIEiJ_G0019363 #26	MGP_CAROLIEiJ_G0019364 #26	MGP_CAROLIEiJ_G0019361 #27	MGP_CAROLIEiJ_G0019360	1700129C05Rik (MGP_CAROLIEiJ_G0019359)	Fgf9 (MGP_CAROLIEiJ_G0019358)	Micu2 (MGP_CAROLIEiJ_G0019357)	Zdhhc20 (MGP_CAROLIEiJ_G0019356)	Ska3 (MGP_CAROLIEiJ_G0019355)	MGP_CAROLIEiJ_G0019354
Shrew mouse	MODERN SPECIES	21	Kpna3 (MGP_PahariEiJ_G0030402) #30	Ebpl (MGP_PahariEiJ_G0030401) #29	Arl11 (MGP_PahariEiJ_G0030400) #28	Sgcg (MGP_PahariEiJ_G0030399)	Sacs (MGP_PahariEiJ_G0030398)	Tnfrsf19 (MGP_PahariEiJ_G0030397)	Mipep (MGP_PahariEiJ_G0030396)	C1qtnf9 (MGP_PahariEiJ_G0030395)	Spata13 (MGP_PahariEiJ_G0030394)	Amer2 (MGP_PahariEiJ_G0030393)	Mtmr6 (MGP_PahariEiJ_G0030392)	Gm49336 (MGP_PahariEiJ_G0030391)	MGP_PahariEiJ_G0030390	Atp8a2 (MGP_PahariEiJ_G0030389)	Shisa2 (MGP_PahariEiJ_G0030388)	Cdadc1 (MGP_PahariEiJ_G0030387) #22	Cab39l (MGP_PahariEiJ_G0030386) #23	Setdb2 (MGP_PahariEiJ_G0030385) #25	MGP_PahariEiJ_G0030384 #26	MGP_PahariEiJ_G0030383 #26	MGP_PahariEiJ_G0030382 #26	MGP_PahariEiJ_G0030381 #26	Rcbtb1 (MGP_PahariEiJ_G0030380) #27	MGP_PahariEiJ_G0030379	1700129C05Rik (MGP_PahariEiJ_G0030378)	Fgf9 (MGP_PahariEiJ_G0030377)	Micu2 (MGP_PahariEiJ_G0030376)	Zdhhc20 (MGP_PahariEiJ_G0030375)	Mrpl57 (MGP_PahariEiJ_G0030374)	Ska3 (MGP_PahariEiJ_G0030373)	MGP_PahariEiJ_G0030372
Rat	MODERN SPECIES	6	Arl11 (ENSRNOG00000014653) #28	LOC103693662 (ENSRNOG00000063996)	Sgcg (ENSRNOG00000014603)	AABR07018124.1 (ENSRNOG00000042281)	Sacs (ENSRNOG00000014509)	Tnfrsf19 (ENSRNOG00000014265)	Mipep (ENSRNOG00000013876)	ENSRNOG00000068540	C1qtnf9 (ENSRNOG00000013793)	Spata13 (ENSRNOG00000013707)	Amer2 (ENSRNOG00000013623)	Mtmr6 (ENSRNOG00000012918)	Nup58 (ENSRNOG00000012644)	Atp8a2 (ENSRNOG00000008053)	Shisa2 (ENSRNOG00000012521)	Cdadc1 (ENSRNOG00000012209) #22	Cab39l (ENSRNOG00000011603) #23	LOC108348241 (ENSRNOG00000069746) #26	Setdb2 (ENSRNOG00000021680) #25	ENSRNOG00000065100 #26	Phf11 (ENSRNOG00000053891) #26	Phf11b (ENSRNOG00000064184) #26	ENSRNOG00000067681	Rcbtb1 (ENSRNOG00000021712) #27	RGD1563302 (ENSRNOG00000038917)	ENSRNOG00000064315	LOC691850 (ENSRNOG00000053522)	Fgf9 (ENSRNOG00000011471)	Micu2 (ENSRNOG00000011168)	Zdhhc20 (ENSRNOG00000011024)	Mrpl57 (ENSRNOG00000062588)
Rodentia_A	ANCESTRAL SPECIES	22	ENSGT00710000106860	ENSGT00940000160585 #7	ENSGT00940000159528 #8	ENSGT00390000011864 #9	ENSGT01050000244937.a.a #10	ENSGT00390000010170.a.b #11	ENSGT00390000003338 #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #14	ENSGT00950000183202.b #15	ENSGT01040000240444.A.a.a.a.a #16	ENSGT00940000158925 #17	ENSGT01100000263536.B.c.a #18	ENSGT00940000159319 #19	ENSGT01100000263484.C.a #20	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #25	ENSGT00950000182865.b.a.b.b.b.a #26	ENSGT00940000155814 #27	ENSGT00940000162731 #28	ENSGT00530000063715.b #29	ENSGT01050000244891.C.c.b #30	ENSGT00390000011048 #31	ENSGT00940000159715 #32	ENSGT00940000161898	ENSGT00390000011737 #34	ENSGT00390000011439 #35	ENSGT00940000162114	ENSGT00390000003838	ENSGT00590000083134.a.a #36
Hystricomorpha	ANCESTRAL SPECIES	25	ENSGT00710000106860	ENSGT00940000160585 #7	ENSGT00940000159528 #8	ENSGT00390000011864.y #9	ENSGT01050000244937.a.a #10	ENSGT00390000010170.a.b #11	ENSGT00390000003338 #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #14	ENSGT00950000183202.b #15	ENSGT01040000240444.A.a.a.a.a #16	ENSGT00940000158925 #17	ENSGT01100000263536.B.c.a #18	ENSGT00940000159319 #19	ENSGT01100000263484.C.a #20	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #25	ENSGT00950000182865.b.a.b.b.b.a #26	ENSGT00940000155814 #27	ENSGT00940000162731 #28	ENSGT00530000063715.b #29	ENSGT01050000244891.C.c.b #30	ENSGT00390000011048 #31	ENSGT00940000159715 #32	ENSGT00390000011737 #34	ENSGT00390000011439 #35	ENSGT00940000162114	ENSGT00390000003838	ENSGT00590000083134.a.a #36	ENSGT00940000160941 #37
Hystricomorpha_a	ANCESTRAL SPECIES	21	ENSGT00710000106860	ENSGT00940000160585 #7	ENSGT00940000159528 #8	ENSGT00390000011864.y #9	ENSGT01050000244937.a.a #10	ENSGT00390000010170.a.b #11	ENSGT00390000003338 #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #14	ENSGT00950000183202.b #15	ENSGT01040000240444.A.a.a.a.a #16	ENSGT00940000158925 #17	ENSGT01100000263536.B.c.a #18	ENSGT00940000159319 #19	ENSGT01100000263484.C.a #20	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #25	ENSGT00950000182865.b.a.b.b.b.a #26	ENSGT00940000155814 #27	ENSGT00940000162731 #28	ENSGT00530000063715.b #29	ENSGT01050000244891.C.c.b #30	ENSGT00390000011048 #31	ENSGT00940000159715 #32	ENSGT00390000011737 #34	ENSGT00390000011439 #35	ENSGT00940000162114	ENSGT00390000003838	ENSGT00590000083134.a.a #36	ENSGT00940000160941 #37
Guinea pig	MODERN SPECIES	6	LCP1 (ENSCPOG00000001937)	RUBCNL (ENSCPOG00000008458) #7	LRCH1 (ENSCPOG00000011077) #8	ESD (ENSCPOG00000011089) #9	HTR2A (ENSCPOG00000038918) #10	SUCLA2 (ENSCPOG00000014961) #11	ENSCPOG00000038770 #12	ENSCPOG00000015058 #12	MED4 (ENSCPOG00000039834) #13	ITM2B (ENSCPOG00000039088) #14	RB1 (ENSCPOG00000008683) #15	LPAR6 (ENSCPOG00000036002) #16	RCBTB2 (ENSCPOG00000008702) #17	CYSLTR2 (ENSCPOG00000001597) #18	FNDC3A (ENSCPOG00000003704) #19	CDADC1 (ENSCPOG00000003715) #22	CAB39L (ENSCPOG00000003721) #23	SETDB2 (ENSCPOG00000002194) #25	PHF11 (ENSCPOG00000002197) #26	RCBTB1 (ENSCPOG00000002199) #27	ARL11 (ENSCPOG00000040608) #28	EBPL (ENSCPOG00000038144) #29	KPNA3 (ENSCPOG00000004628) #30	SPRYD7 (ENSCPOG00000032352) #31	TRIM13 (ENSCPOG00000001929) #32	DLEU7 (ENSCPOG00000030950) #34	RNASEH2B (ENSCPOG00000032527) #35	ENSCPOG00000009047	C13orf42 (ENSCPOG00000034338)
Hystricomorpha_b	ANCESTRAL SPECIES	48		ENSGT00940000160585 #7	ENSGT00940000159528 #8	ENSGT00390000011864.y #9	ENSGT01050000244937.a.a #10	ENSGT00390000010170.a.b #11	ENSGT00390000003338 #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #14	ENSGT00950000183202.b #15	ENSGT01040000240444.A.a.a.a.a #16	ENSGT00940000158925 #17	ENSGT01100000263536.B.c.a #18	ENSGT00940000159319 #19	ENSGT01100000263484.C.a #20	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #25	ENSGT00950000182865.b.a.b.b.b.a #26	ENSGT00940000155814 #27	ENSGT00940000162731 #28	ENSGT00530000063715.b #29	ENSGT01050000244891.C.c.b #30	ENSGT00390000011048 #31	ENSGT00940000159715 #32	ENSGT00390000011737 #34	ENSGT00390000011439 #35	ENSGT00940000162114	ENSGT00390000003838	ENSGT00590000083134.a.a #36	ENSGT00940000160941 #37
Long-tailed chinchilla	MODERN SPECIES	138	RUBCNL (ENSCLAG00000003683) #7	LRCH1 (ENSCLAG00000004349) #8	ESD (ENSCLAG00000005889) #9	HTR2A (ENSCLAG00000006315) #10	ENSCLAG00000010853	SUCLA2 (ENSCLAG00000007422) #11	NUDT15 (ENSCLAG00000008172) #12	MED4 (ENSCLAG00000008512) #13	ITM2B (ENSCLAG00000006439) #14	RB1 (ENSCLAG00000006971) #15	LPAR6 (ENSCLAG00000017673) #16	RCBTB2 (ENSCLAG00000008746) #17	CYSLTR2 (ENSCLAG00000004826) #18	FNDC3A (ENSCLAG00000004945) #19	MLNR (ENSCLAG00000005338) #20	CDADC1 (ENSCLAG00000003253) #22	CAB39L (ENSCLAG00000006518) #23	SETDB2 (ENSCLAG00000007348) #25	ENSCLAG00000009026	PHF11 (ENSCLAG00000003316) #26	RCBTB1 (ENSCLAG00000004132) #27	ARL11 (ENSCLAG00000005195) #28	EBPL (ENSCLAG00000003551) #29	KPNA3 (ENSCLAG00000003858) #30	SPRYD7 (ENSCLAG00000005061) #31	TRIM13 (ENSCLAG00000005696) #32	DLEU7 (ENSCLAG00000005848) #34	RNASEH2B (ENSCLAG00000003517) #35	C13orf42 (ENSCLAG00000003677)	FAM124A (ENSCLAG00000003727) #36	SERPINE3 (ENSCLAG00000003869) #37
Degu	MODERN SPECIES	92	ENSODEG00000005873 #11	ENSODEG00000006404	NUDT15 (ENSODEG00000006598) #12	ENSODEG00000006829 #13	ENSODEG00000005765 #14	RB1 (ENSODEG00000007075) #15	LPAR6 (ENSODEG00000019536) #16	RCBTB2 (ENSODEG00000007840) #17	ENSODEG00000006804	ENSODEG00000019363	CYSLTR2 (ENSODEG00000005345) #18	ENSODEG00000005498	FNDC3A (ENSODEG00000005882) #19	ENSODEG00000019344	MLNR (ENSODEG00000005947) #20	CDADC1 (ENSODEG00000005355) #22	CAB39L (ENSODEG00000005405) #23	SETDB2 (ENSODEG00000005653) #25	RCBTB1 (ENSODEG00000009239) #27	EBPL (ENSODEG00000006022) #29	ENSODEG00000006427 #30	ENSODEG00000005796	ENSODEG00000006101 #31	TRIM13 (ENSODEG00000005624) #32	ENSODEG00000019247	ENSODEG00000006325	ENSODEG00000006650	DLEU7 (ENSODEG00000006775) #34	ENSODEG00000006793 #35	ENSODEG00000007411	C13orf42 (ENSODEG00000005880)
Naked mole-rat female	MODERN SPECIES	2	ENSHGLG00000019880	ENSHGLG00000006924	ENSHGLG00000006869 #11	NUDT15 (ENSHGLG00000037073) #12	MED4 (ENSHGLG00000013271) #13	ENSHGLG00000013614 #14	ENSHGLG00000012986	RB1 (ENSHGLG00000003581) #15	ENSHGLG00000037766	RCBTB2 (ENSHGLG00000003102) #17	ENSHGLG00000043759	ENSHGLG00000034874	ENSHGLG00000011200	FNDC3A (ENSHGLG00000007427) #19	MLNR (ENSHGLG00000006363) #20	CDADC1 (ENSHGLG00000007415) #22	CAB39L (ENSHGLG00000005677) #23	SETDB2 (ENSHGLG00000003820) #25	PHF11 (ENSHGLG00000003303) #26	RCBTB1 (ENSHGLG00000003006) #27	ARL11 (ENSHGLG00000031866) #28	EBPL (ENSHGLG00000005678) #29	KPNA3 (ENSHGLG00000004176) #30	ENSHGLG00000047604	SPRYD7 (ENSHGLG00000003741) #31	TRIM13 (ENSHGLG00000037520) #32	ENSHGLG00000020485	DLEU7 (ENSHGLG00000046292) #34	RNASEH2B (ENSHGLG00000007730) #35	ENSHGLG00000004840	C13orf42 (ENSHGLG00000004742)
Sciuridae	ANCESTRAL SPECIES	34	ENSGT00710000106860	ENSGT00940000160585 #7	ENSGT00940000159528 #8	ENSGT00390000011864 #9	ENSGT01050000244937.a.a #10	ENSGT00390000010170.a.b #11	ENSGT00390000003338 #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #14	ENSGT00950000183202.b #15	ENSGT01040000240444.A.a.a.a.a #16	ENSGT00940000158925 #17	ENSGT01100000263536.B.c.a #18	ENSGT00940000159319 #19	ENSGT01100000263484.C.a #20	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #25	ENSGT00950000182865.b.a.b.b.b.a #26	ENSGT00940000155814 #27	ENSGT00940000162731 #28	ENSGT00530000063715.b #29	ENSGT01050000244891.C.c.b #30	ENSGT00390000011048 #31	ENSGT00940000159715 #32	ENSGT00940000161898	ENSGT00390000011737 #34	ENSGT00390000011439 #35	ENSGT00940000162114	ENSGT00390000003838	ENSGT00590000083134.a.a #36
Eurasian red squirrel	MODERN SPECIES	13	LRCH1 (ENSSVLG00005001766) #8	ENSSVLG00005001827 #9	ENSSVLG00005001859 #10	SUCLA2 (ENSSVLG00005001944) #11	ENSSVLG00005001974 #12	MED4 (ENSSVLG00005001989) #13	ITM2B (ENSSVLG00005002020) #14	ENSSVLG00005002047	RB1 (ENSSVLG00005002082) #15	LPAR6 (ENSSVLG00005002170) #16	RCBTB2 (ENSSVLG00005002211) #17	ENSSVLG00005002284	ENSSVLG00005002299 #19	ENSSVLG00005002325 #19	MLNR (ENSSVLG00005002363) #20	CDADC1 (ENSSVLG00005002377) #22	ENSSVLG00005002409	CAB39L (ENSSVLG00005002440) #23	SETDB2 (ENSSVLG00005002488) #25	ENSSVLG00005002542 #26	RCBTB1 (ENSSVLG00005002559) #27	ARL11 (ENSSVLG00005002576) #28	EBPL (ENSSVLG00005002591) #29	KPNA3 (ENSSVLG00005002614) #30	SPRYD7 (ENSSVLG00005002639) #31	ENSSVLG00005002671	ENSSVLG00005002704	TRIM13 (ENSSVLG00005002735) #32	ENSSVLG00005002745	ENSSVLG00005002766	ENSSVLG00005002781
Marmotini	ANCESTRAL SPECIES	29	ENSGT00710000106860	ENSGT00940000160585 #7	ENSGT00940000159528 #8	ENSGT00390000011864 #9	ENSGT01050000244937.a.a #10	ENSGT00390000010170.a.b #11	ENSGT00390000003338 #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #14	ENSGT01040000240444.A.a.a.a.a #16	ENSGT00950000183202.b #15	ENSGT00940000158925 #17	ENSGT01100000263536.B.c.a #18	ENSGT00940000159319 #19	ENSGT01100000263484.C.a #20	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #25	ENSGT00950000182865.b.a.b.b.b.a #26	ENSGT00940000155814 #27	ENSGT00940000162731 #28	ENSGT00530000063715.b #29	ENSGT01050000244891.C.c.b #30	ENSGT00390000011048 #31	ENSGT00940000159715 #32	ENSGT00940000161898	ENSGT00390000011737 #34	ENSGT00390000011439 #35	ENSGT00940000162114	ENSGT00390000003838	ENSGT00590000083134.a.a #36
Marmotini_b	ANCESTRAL SPECIES	110		ENSGT00940000160585 #7	ENSGT00940000159528 #8	ENSGT00390000011864 #9	ENSGT01050000244937.a.a #10	ENSGT00390000010170.a.b #11	ENSGT00390000003338 #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #14	ENSGT00950000183202.b #15	ENSGT01040000240444.A.a.a.a.a #16	ENSGT00940000158925 #17	ENSGT01100000263536.B.c.a #18	ENSGT00940000159319 #19	ENSGT01100000263484.C.a #20	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #25	ENSGT00950000182865.b.a.b.b.b.a #26	ENSGT00940000155814 #27	ENSGT00940000162731 #28	ENSGT00530000063715.b #29	ENSGT01050000244891.C.c.b #30	ENSGT00390000011048 #31	ENSGT00940000159715 #32	ENSGT00940000161898	ENSGT00390000011737 #34	ENSGT00390000011439 #35	ENSGT00940000162114	ENSGT00390000003838	ENSGT00590000083134.a.a #36
Arctic ground squirrel	MODERN SPECIES	124		ENSUPAG00010004625 #7	LRCH1 (ENSUPAG00010004570) #8	ESD (ENSUPAG00010004501) #9	HTR2A (ENSUPAG00010004485) #10	SUCLA2 (ENSUPAG00010004459) #11	NUDT15 (ENSUPAG00010004450) #12	MED4 (ENSUPAG00010004439) #13	ITM2B (ENSUPAG00010004431) #14	LPAR6 (ENSUPAG00010004428) #16	RB1 (ENSUPAG00010004366) #15	RCBTB2 (ENSUPAG00010004306) #17	CYSLTR2 (ENSUPAG00010004301) #18	FNDC3A (ENSUPAG00010004258) #19	MLNR (ENSUPAG00010004242) #20	CDADC1 (ENSUPAG00010004175) #22	CAB39L (ENSUPAG00010004156) #23	SETDB2 (ENSUPAG00010004135) #25	PHF11 (ENSUPAG00010004112) #26	RCBTB1 (ENSUPAG00010004083) #27	ARL11 (ENSUPAG00010004075) #28	EBPL (ENSUPAG00010004067) #29	KPNA3 (ENSUPAG00010004046) #30	SPRYD7 (ENSUPAG00010004032) #31	TRIM13 (ENSUPAG00010004025) #32	KCNRG (ENSUPAG00010004022)	DLEU7 (ENSUPAG00010003981) #34	RNASEH2B (ENSUPAG00010003959) #35	ENSUPAG00010003902	C13orf42 (ENSUPAG00010003886)	FAM124A (ENSUPAG00010003875) #36
Squirrel	MODERN SPECIES	165				LRCH1 (ENSSTOG00000002840) #8	ESD (ENSSTOG00000002854) #9	HTR2A (ENSSTOG00000002863) #10	SUCLA2 (ENSSTOG00000003010) #11	NUDT15 (ENSSTOG00000001335) #12	MED4 (ENSSTOG00000001343) #13	ITM2B (ENSSTOG00000007270) #14	RB1 (ENSSTOG00000000927) #15	LPAR6 (ENSSTOG00000026961) #16	RCBTB2 (ENSSTOG00000014863) #17	FNDC3A (ENSSTOG00000011923) #19	MLNR (ENSSTOG00000011965) #20	CDADC1 (ENSSTOG00000011972) #22	ENSSTOG00000021927	CAB39L (ENSSTOG00000002967) #23	SETDB2 (ENSSTOG00000002985) #25	PHF11 (ENSSTOG00000023483) #26	RCBTB1 (ENSSTOG00000028110) #27	EBPL (ENSSTOG00000002999) #29	KPNA3 (ENSSTOG00000003006) #30	SPRYD7 (ENSSTOG00000029895) #31	TRIM13 (ENSSTOG00000024506) #32	KCNRG (ENSSTOG00000001023)	DLEU7 (ENSSTOG00000022745) #34	RNASEH2B (ENSSTOG00000015126) #35	ENSSTOG00000007324	C13orf42 (ENSSTOG00000033767)	FAM124A (ENSSTOG00000026616) #36
Alpin marmot	DUPLICATION
Alpin marmot	MODERN SPECIES	13	RUBCNL (ENSMMMG00000023314) #7	LRCH1 (ENSMMMG00000023214) #8	ESD (ENSMMMG00000023189) #9	HTR2A (ENSMMMG00000023175) #10	SUCLA2 (ENSMMMG00000023163) #11	NUDT15 (ENSMMMG00000023158) #12	MED4 (ENSMMMG00000023156) #13	ITM2B (ENSMMMG00000023154) #14	LPAR6 (ENSMMMG00000023147) #16	RB1 (ENSMMMG00000023141) #15	RCBTB2 (ENSMMMG00000023136) #17	CYSLTR2 (ENSMMMG00000023126) #18	FNDC3A (ENSMMMG00000023109) #19	ENSMMMG00000023108	ENSMMMG00000023106	CDADC1 (ENSMMMG00000023083) #22	ENSMMMG00000023071 #23	SETDB2 (ENSMMMG00000023069) #25	PHF11 (ENSMMMG00000023063) #26	RCBTB1 (ENSMMMG00000023061) #27	ARL11 (ENSMMMG00000023058) #28	EBPL (ENSMMMG00000023057) #29	KPNA3 (ENSMMMG00000023052) #30	SPRYD7 (ENSMMMG00000023040) #31	TRIM13 (ENSMMMG00000023039) #32	KCNRG (ENSMMMG00000023037)	DLEU7 (ENSMMMG00000022997) #34	RNASEH2B (ENSMMMG00000022994) #35	ENSMMMG00000022990	C13orf42 (ENSMMMG00000022978)	FAM124A (ENSMMMG00000022976) #36
Alpin marmot	MODERN SPECIES	39	NEURL1 (ENSMMMG00000000158)	SH3PXD2A (ENSMMMG00000000203)	STN1 (ENSMMMG00000000299)	SLK (ENSMMMG00000000361)	COL17A1 (ENSMMMG00000000492)	SFR1 (ENSMMMG00000000727)	CFAP43 (ENSMMMG00000000749)	ENSMMMG00000001103	GSTO1 (ENSMMMG00000001145)	GSTO2 (ENSMMMG00000001167)	ITPRIP (ENSMMMG00000001191)	CFAP58 (ENSMMMG00000001204)	SORCS3 (ENSMMMG00000001241)	SORCS1 (ENSMMMG00000001325)	ENSMMMG00000001588	ENSMMMG00000001594 #22	XPNPEP1 (ENSMMMG00000001605)	ENSMMMG00000001684	ADD3 (ENSMMMG00000001707)	MXI1 (ENSMMMG00000001946)	ENSMMMG00000001959	SMNDC1 (ENSMMMG00000001963)	ENSMMMG00000001972	DUSP5 (ENSMMMG00000001986)	SMC3 (ENSMMMG00000002004)	RBM20 (ENSMMMG00000002043)	ENSMMMG00000002115	PDCD4 (ENSMMMG00000002133)	ENSMMMG00000002162	ENSMMMG00000002171	ADRA2A (ENSMMMG00000002204)
Laurasiatheria	ANCESTRAL SPECIES	20	ENSGT00710000106860	ENSGT00940000160585 #7	ENSGT00940000159528 #8	ENSGT00390000011864 #9	ENSGT01050000244937.a.a #10	ENSGT00390000010170.a.b #11	ENSGT00390000003338 #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #14	ENSGT00950000183202.b #15	ENSGT01040000240444.A.a.a.a.a #16	ENSGT00940000158925 #17	ENSGT01100000263536.B.c.a #18	ENSGT00940000159319 #19	ENSGT01100000263484.C.a #20	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000169427 #24	ENSGT00940000158209 #25	ENSGT00950000182865.b.a.b.b.b.a #26	ENSGT00940000155814 #27	ENSGT00940000162731 #28	ENSGT00530000063715.b #29	ENSGT01050000244891.C.c.b #30	ENSGT00390000011048 #31	ENSGT00940000159715 #32	ENSGT00940000161898	ENSGT00390000011737 #34	ENSGT00390000011439 #35	ENSGT00940000162114	ENSGT00390000003838
Eulipotyphla	ANCESTRAL SPECIES	2295															ENSGT01100000263484.C.a #20	ENSGT00940000153676.b #22
Common shrew	MODERN SPECIES	10590															MLNR (ENSSARG00000010555) #20	CDADC1 (ENSSARG00000010558) #22
Hedgehog	MODERN SPECIES	632																CDADC1 (ENSEEUG00000000532) #22
Laurasiatheria_a	ANCESTRAL SPECIES	21	ENSGT00710000106860	ENSGT00940000160585 #7	ENSGT00940000159528 #8	ENSGT00390000011864 #9	ENSGT01050000244937.a.a #10	ENSGT00390000010170.a.b #11	ENSGT00390000003338 #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #14	ENSGT00950000183202.b #15	ENSGT01040000240444.A.a.a.a.a #16	ENSGT00940000158925 #17	ENSGT01100000263536.B.c.a #18	ENSGT00940000159319 #19	ENSGT01100000263484.C.a #20	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000169427 #24	ENSGT00940000158209 #25	ENSGT00950000182865.b.a.b.b.b.a #26	ENSGT00940000155814 #27	ENSGT00940000162731 #28	ENSGT00530000063715.b #29	ENSGT01050000244891.C.c.b #30	ENSGT00390000011048.f #31	ENSGT00940000159715 #32	ENSGT00940000161898	ENSGT00390000011737 #34	ENSGT00390000011439 #35	ENSGT00940000162114	ENSGT00390000003838
Artiodactyla	ANCESTRAL SPECIES	21	ENSGT00940000160585 #7	ENSGT00940000159528 #8	ENSGT00390000011864 #9	ENSGT01050000244937.a.a #10	ENSGT00390000010170.a.b #11	ENSGT00390000003338 #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #14	ENSGT00950000183202.b #15	ENSGT01040000240444.A.a.a.a.a #16	ENSGT00940000158925 #17	ENSGT00990000203619.B	ENSGT01100000263536.B.c.a #18	ENSGT00940000159319 #19	ENSGT01100000263484.C.a #20	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000169427 #24	ENSGT00940000158209 #25	ENSGT00950000182865.b.a.b.b.b.a #26	ENSGT00940000155814 #27	ENSGT00940000162731 #28	ENSGT00530000063715.b #29	ENSGT01050000244891.C.c.b #30	ENSGT00390000011048.f #31	ENSGT00940000159715 #32	ENSGT00940000161898	ENSGT00390000011737 #34	ENSGT00390000011439 #35	ENSGT00940000162114	ENSGT00390000003838
Suina	ANCESTRAL SPECIES	29	ENSGT00940000160585 #7	ENSGT00940000159528 #8	ENSGT00390000011864 #9	ENSGT01050000244937.a.a #10	ENSGT00390000010170.a.b #11	ENSGT00390000003338 #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #14	ENSGT00950000183202.b #15	ENSGT01040000240444.A.a.a.a.a #16	ENSGT00940000158925 #17	ENSGT00990000203619.B	ENSGT01050000247867	ENSGT00940000159319 #19	ENSGT01100000263484.C.a #20	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #25	ENSGT00950000182865.b.a.b.b.b.a #26	ENSGT00940000155814 #27	ENSGT00940000162731 #28	ENSGT00530000063715.b #29	ENSGT01050000244891.C.c.b #30	ENSGT00390000011048.f #31	ENSGT00940000159715 #32	ENSGT00940000161898	ENSGT00390000011737 #34	ENSGT00390000011439 #35	ENSGT00940000162114	ENSGT00390000003838	ENSGT00590000083134.a.a #36
Pig	MODERN SPECIES	2	ESD (ENSSSCG00000009407) #9	HTR2A (ENSSSCG00000037452) #10	SUCLA2 (ENSSSCG00000009405) #11	NUDT15 (ENSSSCG00000027551) #12	MED4 (ENSSSCG00000035098) #13	ITM2B (ENSSSCG00000009403) #14	LPAR6 (ENSSSCG00000061460) #16	RB1 (ENSSSCG00000009401) #15	RCBTB2 (ENSSSCG00000009400) #17	CYSLTR2 (ENSSSCG00000009399)	ENSSSCG00000039832	ENSSSCG00000048866	ENSSSCG00000052494	FNDC3A (ENSSSCG00000022159) #19	MLNR (ENSSSCG00000022064) #20	CDADC1 (ENSSSCG00000031598) #22	CAB39L (ENSSSCG00000009397) #23	SETDB2 (ENSSSCG00000009395) #25	PHF11 (ENSSSCG00000009396) #26	RCBTB1 (ENSSSCG00000021060) #27	ARL11 (ENSSSCG00000053768) #28	EBPL (ENSSSCG00000009393) #29	KPNA3 (ENSSSCG00000024125) #30	SPRYD7 (ENSSSCG00000009390) #31	TRIM13 (ENSSSCG00000009389) #32	KCNRG (ENSSSCG00000009388)	ENSSSCG00000047786	ENSSSCG00000049891	DLEU7 (ENSSSCG00000009387) #34	RNASEH2B (ENSSSCG00000024385) #35	ENSSSCG00000024765
Chacoan peccary	MODERN SPECIES	216	RUBCNL (ENSCWAG00000001665) #7	LRCH1 (ENSCWAG00000001714) #8	ESD (ENSCWAG00000001743) #9	HTR2A (ENSCWAG00000001769) #10	SUCLA2 (ENSCWAG00000001786) #11	NUDT15 (ENSCWAG00000001809) #12	MED4 (ENSCWAG00000001822) #13	ITM2B (ENSCWAG00000001848) #14	RB1 (ENSCWAG00000001887) #15	LPAR6 (ENSCWAG00000001900) #16	RCBTB2 (ENSCWAG00000001915) #17	ENSCWAG00000001961	ENSCWAG00000001972	FNDC3A (ENSCWAG00000002000) #19	MLNR (ENSCWAG00000002068) #20	CDADC1 (ENSCWAG00000002080) #22	CAB39L (ENSCWAG00000002108) #23	SETDB2 (ENSCWAG00000002141) #25	PHF11 (ENSCWAG00000002166) #26	RCBTB1 (ENSCWAG00000002188) #27	ARL11 (ENSCWAG00000002209) #28	EBPL (ENSCWAG00000002227) #29	KPNA3 (ENSCWAG00000002256) #30	SPRYD7 (ENSCWAG00000002290) #31	TRIM13 (ENSCWAG00000002306) #32	KCNRG (ENSCWAG00000002315)	DLEU7 (ENSCWAG00000002340) #34	RNASEH2B (ENSCWAG00000002368) #35	ENSCWAG00000002466	ENSCWAG00000002483	C13orf42 (ENSCWAG00000002508)
Artiodactyla_a	ANCESTRAL SPECIES	22	ENSGT00940000160585 #7	ENSGT00940000159528 #8	ENSGT00390000011864 #9	ENSGT01050000244937.a.a #10	ENSGT00390000010170.a.b #11	ENSGT00390000003338 #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #14	ENSGT00950000183202.b #15	ENSGT01040000240444.A.a.a.a.a #16	ENSGT00940000158925 #17	ENSGT00990000203619.B	ENSGT01100000263536.B.c.a #18	ENSGT00940000159319 #19	ENSGT01100000263484.C.a #20	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000169427 #24	ENSGT00940000158209 #25	ENSGT00950000182865.b.a.b.b.b.a #26	ENSGT00940000155814 #27	ENSGT00940000162731 #28	ENSGT00530000063715.b #29	ENSGT01050000244891.C.c.b #30	ENSGT00390000011048.f #31	ENSGT00940000159715 #32	ENSGT00940000161898	ENSGT00390000011737 #34	ENSGT00390000011439 #35	ENSGT00940000162114	ENSGT00390000003838
Artiodactyla_b	ANCESTRAL SPECIES	22	ENSGT00940000160585 #7	ENSGT00940000159528 #8	ENSGT00390000011864 #9	ENSGT01050000244937.a.a #10	ENSGT00390000010170.a.b #11	ENSGT00390000003338 #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #14	ENSGT00950000183202.b #15	ENSGT01040000240444.A.a.a.a.a #16	ENSGT00940000158925 #17	ENSGT00990000203619.B	ENSGT01100000263536.B.c.a #18	ENSGT00940000159319 #19	ENSGT01100000263484.C.a #20	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #25	ENSGT00950000182865.b.a.b.b.b.a #26	ENSGT00940000155814 #27	ENSGT00940000162731 #28	ENSGT00530000063715.b #29	ENSGT01050000244891.C.c.b #30	ENSGT00390000011048.f #31	ENSGT00940000159715 #32	ENSGT00940000161898	ENSGT00390000011737 #34	ENSGT00390000011439 #35	ENSGT00940000162114	ENSGT00390000003838	ENSGT00590000083134.a.a #36
Cetacea	ANCESTRAL SPECIES	20	ENSGT00940000159528 #8	ENSGT00390000011864 #9	ENSGT01050000244937.a.a #10	ENSGT00390000010170.a.b #11	ENSGT00390000003338.s.a #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #14	ENSGT01040000240444.A.a.a.a.a #16	ENSGT00950000183202.b #15	ENSGT00940000158925 #17	ENSGT00990000203619.B	ENSGT00940000159853.k	ENSGT01100000263536.B.c.a #18	ENSGT00940000159319 #19	ENSGT01100000263484.C.a #20	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #25	ENSGT00950000182865.b.a.b.b.b.a #26	ENSGT00940000155814 #27	ENSGT00940000162731 #28	ENSGT00530000063715.b #29	ENSGT01050000244891.C.c.b #30	ENSGT00390000011048.f #31	ENSGT00940000159715 #32	ENSGT00940000161898	ENSGT00390000011737 #34	ENSGT00390000011439 #35	ENSGT00940000162114	ENSGT00390000003838	ENSGT00590000083134.a.a #36
Odontoceti	ANCESTRAL SPECIES	21	ENSGT00940000159528 #8	ENSGT00390000011864 #9	ENSGT01050000244937.a.a #10	ENSGT00390000010170.a.b #11	ENSGT00390000003338.s.a #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #14	ENSGT00950000183202.b #15	ENSGT01040000240444.A.a.a.a.a #16	ENSGT00940000158925 #17	ENSGT00990000203619.B	ENSGT00940000159853.k	ENSGT01100000263536.B.c.a #18	ENSGT00940000159319 #19	ENSGT01100000263484.C.a #20	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #25	ENSGT00950000182865.b.a.b.b.b.a #26	ENSGT00940000155814 #27	ENSGT00940000162731 #28	ENSGT00530000063715.b #29	ENSGT01050000244891.C.c.b #30	ENSGT00390000011048.f #31	ENSGT00940000159715 #32	ENSGT00940000161898	ENSGT00390000011737 #34	ENSGT00390000011439 #35	ENSGT00940000162114	ENSGT00390000003838	ENSGT00590000083134.a.a #36
Odontoceti_a	ANCESTRAL SPECIES	24	ENSGT00940000160585 #7	ENSGT00940000159528 #8	ENSGT00390000011864 #9	ENSGT01050000244937.a.a #10	ENSGT00390000010170.a.b #11	ENSGT00390000003338.s.a #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #14	ENSGT00950000183202.b #15	ENSGT01040000240444.A.a.a.a.a #16	ENSGT00940000158925 #17	ENSGT00990000203619.B	ENSGT00940000159853.k	ENSGT00940000159319 #19	ENSGT01100000263484.C.a #20	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #25	ENSGT00950000182865.b.a.b.b.b.a #26	ENSGT00940000155814 #27	ENSGT00940000162731 #28	ENSGT00530000063715.b #29	ENSGT01050000244891.C.c.b #30	ENSGT00390000011048.f #31	ENSGT00940000159715 #32	ENSGT00940000161898	ENSGT00390000011737 #34	ENSGT00390000011439 #35	ENSGT00940000162114	ENSGT00390000003838	ENSGT00590000083134.a.a #36
Odontoceti_b	ANCESTRAL SPECIES	21	ENSGT00940000160585 #7	ENSGT00940000159528 #8	ENSGT00390000011864 #9	ENSGT01050000244937.a.a #10	ENSGT00390000010170.a.b #11	ENSGT00390000003338.s.a #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #14	ENSGT01040000240444.A.a.a.a.a #16	ENSGT00950000183202.b #15	ENSGT00940000158925 #17	ENSGT00990000203619.B	ENSGT00940000159853.k	ENSGT00940000159319 #19	ENSGT01100000263484.C.a #20	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #25	ENSGT00950000182865.b.a.b.b.b.a #26	ENSGT00940000155814 #27	ENSGT00940000162731 #28	ENSGT00530000063715.b #29	ENSGT01050000244891.C.c.b #30	ENSGT00390000011048.f #31	ENSGT00940000159715 #32	ENSGT00940000161898	ENSGT00390000011737 #34	ENSGT00390000011439 #35	ENSGT00390000003838	ENSGT00590000083134.a.a #36	ENSGT00940000160941 #37
Monodontidae	ANCESTRAL SPECIES	15	ENSGT00940000160585 #7	ENSGT00940000159528 #8	ENSGT00390000011864 #9	ENSGT01050000244937.a.a #10	ENSGT00390000010170.a.b #11	ENSGT00390000003338.s.a #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #14	ENSGT00950000183202.b #15	ENSGT01040000240444.A.a.a.a.a #16	ENSGT00940000158925 #17	ENSGT00990000203619.B	ENSGT00940000159853.k	ENSGT00940000159319 #19	ENSGT01100000263484.C.a #20	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #25	ENSGT00950000182865.b.a.b.b.b.a #26	ENSGT00940000155814 #27	ENSGT00940000162731 #28	ENSGT00530000063715.b #29	ENSGT01050000244891.C.c.b #30	ENSGT00390000011048.f #31	ENSGT00940000159715 #32	ENSGT00940000161898	ENSGT00390000011737 #34	ENSGT00390000011439 #35	ENSGT00390000003838	ENSGT00590000083134.a.a #36	ENSGT00940000160941 #37
Beluga whale	MODERN SPECIES	29	LRRC63 (ENSDLEG00000006661)	RUBCNL (ENSDLEG00000006651) #7	LRCH1 (ENSDLEG00000006642) #8	ESD (ENSDLEG00000006636) #9	HTR2A (ENSDLEG00000006633) #10	ENSDLEG00000006628	ENSDLEG00000006598 #11	NUDT15 (ENSDLEG00000006593) #12	MED4 (ENSDLEG00000018152) #13	ITM2B (ENSDLEG00000018145) #14	LPAR6 (ENSDLEG00000018142) #16	RB1 (ENSDLEG00000017962) #15	RCBTB2 (ENSDLEG00000017915) #17	CYSLTR2 (ENSDLEG00000017910)	FNDC3A (ENSDLEG00000017835) #19	CDADC1 (ENSDLEG00000017796) #22	CAB39L (ENSDLEG00000017770) #23	ENSDLEG00000017746	SETDB2 (ENSDLEG00000017692) #25	PHF11 (ENSDLEG00000017664) #26	RCBTB1 (ENSDLEG00000017626) #27	ARL11 (ENSDLEG00000017617) #28	EBPL (ENSDLEG00000017604) #29	KPNA3 (ENSDLEG00000017566) #30	SPRYD7 (ENSDLEG00000017540) #31	TRIM13 (ENSDLEG00000017528) #32	KCNRG (ENSDLEG00000017518)	DLEU7 (ENSDLEG00000017502) #34	RNASEH2B (ENSDLEG00000017435) #35	FAM124A (ENSDLEG00000017408) #36	SERPINE3 (ENSDLEG00000017376) #37
Narwhal	MODERN SPECIES	315	RUBCNL (ENSMMNG00015015197) #7	LRCH1 (ENSMMNG00015015247) #8	ESD (ENSMMNG00015015295) #9	HTR2A (ENSMMNG00015015311) #10	SUCLA2 (ENSMMNG00015015328) #11	ENSMMNG00015015349 #12	MED4 (ENSMMNG00015015360) #13	ITM2B (ENSMMNG00015015387) #14	RB1 (ENSMMNG00015015417) #15	LPAR6 (ENSMMNG00015015469) #16	RCBTB2 (ENSMMNG00015015490) #17	ENSMMNG00015015535	ENSMMNG00015015538	FNDC3A (ENSMMNG00015015574) #19	ENSMMNG00015015744 #20	CDADC1 (ENSMMNG00015015774) #22	CAB39L (ENSMMNG00015015818) #23	ENSMMNG00015015869	SETDB2 (ENSMMNG00015015902) #25	PHF11 (ENSMMNG00015015972) #26	RCBTB1 (ENSMMNG00015016038) #27	ARL11 (ENSMMNG00015016072) #28	EBPL (ENSMMNG00015016101) #29	KPNA3 (ENSMMNG00015016147) #30	SPRYD7 (ENSMMNG00015016188) #31	TRIM13 (ENSMMNG00015016231) #32	KCNRG (ENSMMNG00015016246)	DLEU7 (ENSMMNG00015016283) #34	ENSMMNG00015016308	RNASEH2B (ENSMMNG00015016369) #35	C13orf42 (ENSMMNG00015016493)
Vaquita	MODERN SPECIES	9	LRCH1 (ENSPSNG00000011958) #8	ESD (ENSPSNG00000011858) #9	HTR2A (ENSPSNG00000011806) #10	SUCLA2 (ENSPSNG00000011705) #11	ENSPSNG00000011663	ENSPSNG00000011620 #12	MED4 (ENSPSNG00000011552) #13	ITM2B (ENSPSNG00000011455) #14	LPAR6 (ENSPSNG00000011434) #16	RB1 (ENSPSNG00000011372) #15	RCBTB2 (ENSPSNG00000011199) #17	ENSPSNG00000011140	ENSPSNG00000011098	FNDC3A (ENSPSNG00000010915) #19	MLNR (ENSPSNG00000010798) #20	CDADC1 (ENSPSNG00000010730) #22	ENSPSNG00000022529	CAB39L (ENSPSNG00000022525) #23	SETDB2 (ENSPSNG00000022516) #25	PHF11 (ENSPSNG00000022507) #26	RCBTB1 (ENSPSNG00000022496) #27	ARL11 (ENSPSNG00000022492) #28	EBPL (ENSPSNG00000022487) #29	KPNA3 (ENSPSNG00000022470) #30	SPRYD7 (ENSPSNG00000022460) #31	TRIM13 (ENSPSNG00000022451) #32	KCNRG (ENSPSNG00000022442)	ENSPSNG00000022432	DLEU7 (ENSPSNG00000022427) #34	RNASEH2B (ENSPSNG00000022389) #35	C13orf42 (ENSPSNG00000022369)
Dolphin	MODERN SPECIES	3176														FNDC3A (ENSTTRG00000003995) #19	MLNR (ENSTTRG00000004044) #20	CDADC1 (ENSTTRG00000004052) #22	CAB39L (ENSTTRG00000004058) #23
Sperm whale	MODERN SPECIES	4	LRCH1 (ENSPCTG00005018266) #8	ESD (ENSPCTG00005018195) #9	HTR2A (ENSPCTG00005018130) #10	SUCLA2 (ENSPCTG00005018015) #11	ENSPCTG00005017963 #12	ENSPCTG00005017946 #12	MED4 (ENSPCTG00005017893) #13	ITM2B (ENSPCTG00005017804) #14	LPAR6 (ENSPCTG00005017780) #16	RB1 (ENSPCTG00005017710) #15	RCBTB2 (ENSPCTG00005017419) #17	CYSLTR2 (ENSPCTG00005017388) #18	ENSPCTG00005017346	FNDC3A (ENSPCTG00005017222) #19	MLNR (ENSPCTG00005017145) #20	CDADC1 (ENSPCTG00005016983) #22	CAB39L (ENSPCTG00005016916) #23	ENSPCTG00005016839	SETDB2 (ENSPCTG00005016607) #25	PHF11 (ENSPCTG00005016509) #26	RCBTB1 (ENSPCTG00005016419) #27	ARL11 (ENSPCTG00005016384) #28	EBPL (ENSPCTG00005016280) #29	KPNA3 (ENSPCTG00005016192) #30	SPRYD7 (ENSPCTG00005016094) #31	TRIM13 (ENSPCTG00005016076) #32	KCNRG (ENSPCTG00005016035)	ENSPCTG00005016003	DLEU7 (ENSPCTG00005015971) #34	ENSPCTG00005015716 #35	C13H13orf42 (ENSPCTG00005015632)
Blue whale	MODERN SPECIES	9	LRRC63 (ENSBMSG00010016199)	RUBCNL (ENSBMSG00010016070) #7	LRCH1 (ENSBMSG00010015742) #8	ESD (ENSBMSG00010015643) #9	HTR2A (ENSBMSG00010015606) #10	SUCLA2 (ENSBMSG00010015547) #11	ENSBMSG00010015507	MED4 (ENSBMSG00010015472) #13	ITM2B (ENSBMSG00010015413) #14	LPAR6 (ENSBMSG00010015391) #16	RB1 (ENSBMSG00010015354) #15	RCBTB2 (ENSBMSG00010015126) #17	CYSLTR2 (ENSBMSG00010015059) #18	FNDC3A (ENSBMSG00010014911) #19	MLNR (ENSBMSG00010014851) #20	CDADC1 (ENSBMSG00010014838) #22	ENSBMSG00010014815	CAB39L (ENSBMSG00010014720) #23	SETDB2 (ENSBMSG00010014652) #25	PHF11 (ENSBMSG00010014604) #26	RCBTB1 (ENSBMSG00010014563) #27	ARL11 (ENSBMSG00010014541) #28	EBPL (ENSBMSG00010014472) #29	KPNA3 (ENSBMSG00010014406) #30	SPRYD7 (ENSBMSG00010014337) #31	TRIM13 (ENSBMSG00010014316) #32	KCNRG (ENSBMSG00010014299)	DLEU7 (ENSBMSG00010014262) #34	ENSBMSG00010014157 #35	C13orf42 (ENSBMSG00010014066)	ENSBMSG00010014033
Pecora	ANCESTRAL SPECIES	23	ENSGT00940000160585 #7	ENSGT00940000159528 #8	ENSGT00390000011864.f #9	ENSGT01050000244937.a.a #10	ENSGT00390000010170.a.b #11	ENSGT00390000003338 #12	ENSGT00440000033232.c.a.a	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #14	ENSGT00950000183202.b #15	ENSGT01040000240444.A.a.a.a.a #16	ENSGT00940000158925 #17	ENSGT00990000203619.B	ENSGT00940000159319 #19	ENSGT01100000263484.C.a #20	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #25	ENSGT00950000182865.b.a.b.b.b.a #26	ENSGT00940000155814 #27	ENSGT00940000162731 #28	ENSGT00530000063715.b #29	ENSGT01050000244891.C.c.b #30	ENSGT00390000011048.f #31	ENSGT00940000159715 #32	ENSGT00940000161898	ENSGT00390000011737 #34	ENSGT00390000011439 #35	ENSGT00940000162114	ENSGT00390000003838	ENSGT00590000083134.a.a #36
Yarkand deer	MODERN SPECIES	23	HTR2A (ENSCHYG00000024474) #10	ENSCHYG00000024533	ENSCHYG00000024543 #11	NUDT15 (ENSCHYG00000024631) #12	ENSCHYG00000024649	ENSCHYG00000024654 #13	ITM2B (ENSCHYG00000024688) #14	RB1 (ENSCHYG00000024752) #15	LPAR6 (ENSCHYG00000024973) #16	RCBTB2 (ENSCHYG00000024991) #17	ENSCHYG00000025118	ENSCHYG00000025124	ENSCHYG00000012913	FNDC3A (ENSCHYG00000012972) #19	MLNR (ENSCHYG00000013419) #20	CDADC1 (ENSCHYG00000013468) #22	CAB39L (ENSCHYG00000013652) #23	SETDB2 (ENSCHYG00000013870) #25	ENSCHYG00000014219 #26	RCBTB1 (ENSCHYG00000014739) #27	ARL11 (ENSCHYG00000014869) #28	EBPL (ENSCHYG00000014936) #29	KPNA3 (ENSCHYG00000015100) #30	SPRYD7 (ENSCHYG00000015545) #31	TRIM13 (ENSCHYG00000015725) #32	RNASEH2B (ENSCHYG00000016151) #35	ENSCHYG00000016690	C13orf42 (ENSCHYG00000016791)	FAM124A (ENSCHYG00000016845) #36	SERPINE3 (ENSCHYG00000016914) #37	INTS6 (ENSCHYG00000017052)
Percora_a	ANCESTRAL SPECIES	25	ENSGT00940000160585 #7	ENSGT00940000159528 #8	ENSGT00390000011864.f #9	ENSGT01050000244937.a.a #10	ENSGT00390000010170.a.b #11	ENSGT00390000003338 #12	ENSGT00440000033232.c.a.a	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #14	ENSGT00950000183202.b #15	ENSGT01040000240444.A.a.a.a.a #16	ENSGT00940000158925 #17	ENSGT00990000203619.B	ENSGT00940000159319 #19	ENSGT01100000263484.C.a #20	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #25	ENSGT00950000182865.b.a.b.b.b.a #26	ENSGT00940000155814 #27	ENSGT00940000162731 #28	ENSGT00530000063715.b #29	ENSGT01050000244891.C.c.b #30	ENSGT00390000011048.f #31	ENSGT00940000159715 #32	ENSGT00940000161898	ENSGT00390000011737 #34	ENSGT00390000011439.w #35	ENSGT00940000162114	ENSGT00390000003838	ENSGT00590000083134.a.a #36
Bovidae	ANCESTRAL SPECIES	25	ENSGT00940000160585 #7	ENSGT00940000159528 #8	ENSGT00390000011864.f #9	ENSGT01050000244937.a.a #10	ENSGT00390000010170.a.b #11	ENSGT00390000003338 #12	ENSGT00440000033232.c.a.a	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #14	ENSGT00950000183202.b #15	ENSGT01040000240444.A.a.a.a.a #16	ENSGT00940000158925 #17	ENSGT00990000203619.B	ENSGT00940000159319 #19	ENSGT01100000263484.C.a #20	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #25	ENSGT00950000182865.b.a.b.b.b.a #26	ENSGT00940000155814 #27	ENSGT00940000162731 #28	ENSGT00530000063715.b #29	ENSGT01050000244891.C.c.b #30	ENSGT00390000011048.f #31	ENSGT00940000159715 #32	ENSGT00940000161898	ENSGT00390000011737 #34	ENSGT00390000011439.w #35	ENSGT00940000162114	ENSGT00390000003838	ENSGT00590000083134.a.a #36
Caprinae	ANCESTRAL SPECIES	28														ENSGT00940000159319 #19	ENSGT01100000263484.C.a #20	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #25	ENSGT00950000182865.b.a.b.b.b.a #26	ENSGT00940000155814 #27	ENSGT00940000162731 #28	ENSGT00530000063715.b #29	ENSGT01050000244891.C.c.b #30	ENSGT00390000011048.f #31	ENSGT00940000159715 #32	ENSGT00940000161898	ENSGT00390000011439.w #35	ENSGT00390000003838	ENSGT00590000083134.a.a #36	ENSGT00940000160941 #37	ENSGT00390000016655.a.a.b
Rambouillet Sheep	MODERN SPECIES	1	LRCH1 (ENSOARG00020008711) #8	ENSOARG00020009357 #9	HTR2A (ENSOARG00020009408) #10	ENSOARG00020009436 #11	ENSOARG00020009566 #12	MED4 (ENSOARG00020009593) #13	ITM2B (ENSOARG00020009664) #14	RB1 (ENSOARG00020009781) #15	LPAR6 (ENSOARG00020010750) #16	RCBTB2 (ENSOARG00020010807) #17	ENSOARG00020010995	ENSOARG00020011030	ENSOARG00020011095	FNDC3A (ENSOARG00020011142) #19	MLNR (ENSOARG00020012038) #20	CDADC1 (ENSOARG00020012096) #22	CAB39L (ENSOARG00020012226) #23	SETDB2 (ENSOARG00020012377) #25	ENSOARG00020012627 #26	RCBTB1 (ENSOARG00020012716) #27	ARL11 (ENSOARG00020012929) #28	KPNA3 (ENSOARG00020012953) #30	SPRYD7 (ENSOARG00020013110) #31	TRIM13 (ENSOARG00020013273) #32	KCNRG (ENSOARG00020013280)	RNASEH2B (ENSOARG00020013563) #35	C13orf42 (ENSOARG00020013790)	SERPINE3 (ENSOARG00020013893) #37	INTS6 (ENSOARG00020003114)	WDFY2 (ENSOARG00020003184)	DHRS12 (ENSOARG00020003276)
Goat	MODERN SPECIES	3	LRRC63 (ENSCHIG00000019710)	RUBCNL (ENSCHIG00000012197) #7	LRCH1 (ENSCHIG00000012630) #8	ENSCHIG00000021306 #9	HTR2A (ENSCHIG00000016921) #10	SUCLA2 (ENSCHIG00000018699) #11	NUDT15 (ENSCHIG00000024171) #12	ENSCHIG00000017652 #13	ITM2B (ENSCHIG00000012734) #14	LPAR6 (ENSCHIG00000019533) #16	RB1 (ENSCHIG00000004374) #15	RCBTB2 (ENSCHIG00000012624) #17	ENSCHIG00000006431	FNDC3A (ENSCHIG00000016024) #19	MLNR (ENSCHIG00000007989) #20	CDADC1 (ENSCHIG00000024233) #22	CAB39L (ENSCHIG00000020668) #23	SETDB2 (ENSCHIG00000014895) #25	ENSCHIG00000021752 #26	RCBTB1 (ENSCHIG00000013206) #27	ENSCHIG00000009624	ARL11 (ENSCHIG00000004176) #28	EBPL (ENSCHIG00000014488) #29	KPNA3 (ENSCHIG00000020446) #30	SPRYD7 (ENSCHIG00000015127) #31	TRIM13 (ENSCHIG00000010839) #32	KCNRG (ENSCHIG00000009570)	RNASEH2B (ENSCHIG00000018220) #35	ENSCHIG00000014579	ENSCHIG00000009486	FAM124A (ENSCHIG00000017545) #36
Bovinae	ANCESTRAL SPECIES	29													ENSGT01010000228998	ENSGT00940000159319 #19	ENSGT01100000263484.C.a #20	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #25	ENSGT00950000182865.b.a.b.b.b.a #26	ENSGT00940000155814 #27	ENSGT00940000162731 #28	ENSGT00530000063715.b #29	ENSGT01050000244891.C.c.b #30	ENSGT00390000011048.f #31	ENSGT00940000159715 #32	ENSGT00940000161898	ENSGT00390000011737 #34	ENSGT00390000011439.w #35	ENSGT00940000162114	ENSGT00390000003838	ENSGT00590000083134.a.a #36
Bos	ANCESTRAL SPECIES	28													ENSGT01010000228998	ENSGT00940000159319 #19	ENSGT01100000263484.C.a #20	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #25	ENSGT00950000182865.b.a.b.b.b.a #26	ENSGT00940000155814 #27	ENSGT00940000162731 #28	ENSGT00530000063715.b #29	ENSGT01050000244891.C.c.b #30	ENSGT00390000011048.f #31	ENSGT00940000159715 #32	ENSGT00940000161898	ENSGT00390000011737 #34	ENSGT00390000011439.w #35	ENSGT00940000162114	ENSGT00390000003838	ENSGT00590000083134.a.a #36
Bos_a	ANCESTRAL SPECIES	55	ENSGT01050000244937.a.a #10	ENSGT00390000010170.a.b #11	ENSGT00390000003338 #12	ENSGT00440000033232.c.a.a	ENSGT00390000012063 #13	ENSGT00950000183123.g.a.a.a	ENSGT00950000183115.b.a #14	ENSGT00940000153244.B.z.c.b	ENSGT00950000183202.b #15	ENSGT01040000240444.A.a.a.a.a #16	ENSGT00940000158925 #17	ENSGT00990000203619.B	ENSGT01010000228998	ENSGT00940000159319 #19	ENSGT01100000263484.C.a #20	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #25	ENSGT00950000182865.b.a.b.b.b.a #26	ENSGT00940000155814 #27	ENSGT00940000162731 #28	ENSGT00530000063715.b #29	ENSGT01050000244891.C.c.b #30	ENSGT00390000011048.f #31	ENSGT00940000159715 #32	ENSGT00940000161898	ENSGT00390000011737 #34	ENSGT00390000011439.w #35	ENSGT00940000162114	ENSGT00390000003838	ENSGT00590000083134.a.a #36
Wild yak	MODERN SPECIES	1672				ZNF250 (ENSBMUG00000000565)	ZNF16 (ENSBMUG00000001327)	C8orf33 (ENSBMUG00000001339)	ZNF34 (ENSBMUG00000001352)	ENSBMUG00000001373	RB1 (ENSBMUG00000001429) #15	LPAR6 (ENSBMUG00000001452) #16	RCBTB2 (ENSBMUG00000001512) #17	ENSBMUG00000001537	ENSBMUG00000001545	FNDC3A (ENSBMUG00000001611) #19	MLNR (ENSBMUG00000001633) #20	CDADC1 (ENSBMUG00000001665) #22	CAB39L (ENSBMUG00000001694) #23	ENSBMUG00000001712	SETDB2 (ENSBMUG00000001741) #25	PHF11 (ENSBMUG00000001807) #26	ENSBMUG00000001830	RCBTB1 (ENSBMUG00000001872) #27	ARL11 (ENSBMUG00000001893) #28	ENSBMUG00000001911	KPNA3 (ENSBMUG00000001936) #30	SPRYD7 (ENSBMUG00000001977) #31	TRIM13 (ENSBMUG00000001991) #32	KCNRG (ENSBMUG00000002009)	DLEU7 (ENSBMUG00000002147) #34
Domestic yak	MODERN SPECIES	6	SUCLA2 (ENSBGRG00000020790) #11	NUDT15 (ENSBGRG00000020753) #12	ENSBGRG00000020744	MED4 (ENSBGRG00000020636) #13	ENSBGRG00000020600	ITM2B (ENSBGRG00000020531) #14	ENSBGRG00000020504	LPAR6 (ENSBGRG00000020489) #16	RB1 (ENSBGRG00000020100) #15	RCBTB2 (ENSBGRG00000019788) #17	ENSBGRG00000019770	ENSBGRG00000019739	ENSBGRG00000019677	FNDC3A (ENSBGRG00000019368) #19	MLNR (ENSBGRG00000019319) #20	CDADC1 (ENSBGRG00000019174) #22	CAB39L (ENSBGRG00000019026) #23	SETDB2 (ENSBGRG00000018734) #25	ENSBGRG00000018688	ENSBGRG00000018317 #26	ENSBGRG00000018298	RCBTB1 (ENSBGRG00000018215) #27	ARL11 (ENSBGRG00000018165) #28	EBPL (ENSBGRG00000018006) #29	KPNA3 (ENSBGRG00000017654) #30	SPRYD7 (ENSBGRG00000017543) #31	TRIM13 (ENSBGRG00000017523) #32	KCNRG (ENSBGRG00000017474)	RNASEH2B (ENSBGRG00000016654) #35	ENSBGRG00000016362	C13orf42 (ENSBGRG00000016284)
Bos_b	ANCESTRAL SPECIES	33														ENSGT00940000159319 #19	ENSGT01100000263484.C.a #20	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #25	ENSGT00950000182865.b.a.b.b.b.a #26	ENSGT00940000155814 #27	ENSGT00940000162731 #28	ENSGT00530000063715.b #29	ENSGT01050000244891.C.c.b #30	ENSGT00390000011048.f #31	ENSGT00940000159715 #32	ENSGT00940000161898	ENSGT00390000011737 #34	ENSGT00390000011439.w #35	ENSGT00940000162114	ENSGT00390000003838	ENSGT00590000083134.a.a #36
Cow	MODERN SPECIES	3	HTR2A (ENSBTAG00000013498) #10	SUCLA2 (ENSBTAG00000006759) #11	NUDT15 (ENSBTAG00000019501) #12	ENSBTAG00000050479	MED4 (ENSBTAG00000019502) #13	ENSBTAG00000024964	ITM2B (ENSBTAG00000003109) #14	ENSBTAG00000003560	RB1 (ENSBTAG00000006640) #15	LPAR6 (ENSBTAG00000006645) #16	RCBTB2 (ENSBTAG00000006647) #17	CYSLTR2 (ENSBTAG00000017508)	ENSBTAG00000048524	FNDC3A (ENSBTAG00000020681) #19	MLNR (ENSBTAG00000010475) #20	CDADC1 (ENSBTAG00000002271) #22	CAB39L (ENSBTAG00000034222) #23	ENSBTAG00000049254	SETDB2 (ENSBTAG00000007329) #25	PHF11 (ENSBTAG00000013159) #26	RCBTB1 (ENSBTAG00000034269) #27	ARL11 (ENSBTAG00000016998) #28	EBPL (ENSBTAG00000018410) #29	KPNA3 (ENSBTAG00000004850) #30	SPRYD7 (ENSBTAG00000018829) #31	TRIM13 (ENSBTAG00000008173) #32	KCNRG (ENSBTAG00000008176)	DLEU7 (ENSBTAG00000055114) #34	ENSBTAG00000049315	RNASEH2B (ENSBTAG00000020149) #35	ENSBTAG00000007457
Hybrid Bos Indicus	MODERN SPECIES	3	ESD (ENSBIXG00005003676) #9	HTR2A (ENSBIXG00005021735) #10	SUCLA2 (ENSBIXG00005021655) #11	ENSBIXG00005021596	MED4 (ENSBIXG00005000006) #13	ENSBIXG00005021562	ITM2B (ENSBIXG00005021532) #14	RB1 (ENSBIXG00005021439) #15	ENSBIXG00005021411	LPAR6 (ENSBIXG00005021400) #16	RCBTB2 (ENSBIXG00005021378) #17	ENSBIXG00005003584	ENSBIXG00005021203	FNDC3A (ENSBIXG00005021155) #19	MLNR (ENSBIXG00005005745) #20	CDADC1 (ENSBIXG00005020968) #22	CAB39L (ENSBIXG00005020883) #23	SETDB2 (ENSBIXG00005020628) #25	PHF11 (ENSBIXG00005020432) #26	RCBTB1 (ENSBIXG00005003427) #27	ARL11 (ENSBIXG00005020314) #28	EBPL (ENSBIXG00005007836) #29	KPNA3 (ENSBIXG00005020259) #30	ENSBIXG00005020218	SPRYD7 (ENSBIXG00005020199) #31	TRIM13 (ENSBIXG00005003326) #32	DLEU7 (ENSBIXG00005020068) #34	ENSBIXG00005003277 #35	ENSBIXG00005019941	C13orf42 (ENSBIXG00005019922)	ENSBIXG00005019899
American bison	MODERN SPECIES	2985												ENSBBBG00000000897	ENSBBBG00000000886	FNDC3A (ENSBBBG00000003597) #19	MLNR (ENSBBBG00000014952) #20	CDADC1 (ENSBBBG00000003699) #22	CAB39L (ENSBBBG00000015003) #23	ENSBBBG00000015012	SETDB2 (ENSBBBG00000015067) #25	ENSBBBG00000015076	PHF11 (ENSBBBG00000015109) #26	RCBTB1 (ENSBBBG00000015137) #27	ARL11 (ENSBBBG00000015149) #28	EBPL (ENSBBBG00000003757) #29	KPNA3 (ENSBBBG00000003539) #30	SPRYD7 (ENSBBBG00000015182) #31	TRIM13 (ENSBBBG00000003768) #32	KCNRG (ENSBBBG00000003771)	ENSBBBG00000015246	DLEU7 (ENSBBBG00000015254) #34	ENSBBBG00000001356 #35
Siberian musk deer	MODERN SPECIES	18	RUBCNL (ENSMMSG00000013269) #7	LRCH1 (ENSMMSG00000013375) #8	ENSMMSG00000013450 #9	HTR2A (ENSMMSG00000013507) #10	SUCLA2 (ENSMMSG00000013529) #11	ENSMMSG00000013552 #12	MED4 (ENSMMSG00000013569) #13	ITM2B (ENSMMSG00000013606) #14	RB1 (ENSMMSG00000013661) #15	LPAR6 (ENSMMSG00000013747) #16	RCBTB2 (ENSMMSG00000013770) #17	ENSMMSG00000013837	ENSMMSG00000013845	FNDC3A (ENSMMSG00000013859) #19	MLNR (ENSMMSG00000013954) #20	CDADC1 (ENSMMSG00000013980) #22	CAB39L (ENSMMSG00000014014) #23	SETDB2 (ENSMMSG00000014076) #25	ENSMMSG00000014134 #26	RCBTB1 (ENSMMSG00000014208) #27	ARL11 (ENSMMSG00000014242) #28	EBPL (ENSMMSG00000014258) #29	KPNA3 (ENSMMSG00000014287) #30	SPRYD7 (ENSMMSG00000014349) #31	TRIM13 (ENSMMSG00000014380) #32	KCNRG (ENSMMSG00000014388)	RNASEH2B (ENSMMSG00000014495) #35	ENSMMSG00000014954	C13orf42 (ENSMMSG00000015008)	FAM124A (ENSMMSG00000015030) #36	SERPINE3 (ENSMMSG00000015050) #37
Camelidae	ANCESTRAL SPECIES	14	ENSGT00710000106860	ENSGT00940000160585 #7	ENSGT00940000159528 #8	ENSGT00390000011864 #9	ENSGT01050000244937.a.a #10	ENSGT00390000010170.a.b #11	ENSGT00390000003338 #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #14	ENSGT00950000183202.b #15	ENSGT01040000240444.A.a.a.a.a #16	ENSGT00940000158925 #17	ENSGT01100000263536.B.c.a #18	ENSGT00940000159319 #19	ENSGT01100000263484.C.a #20	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000169427 #24	ENSGT00940000158209 #25	ENSGT00950000182865.b.a.b.b.b.a #26	ENSGT00940000155814 #27	ENSGT00940000162731 #28	ENSGT00530000063715.b #29	ENSGT01050000244891.C.c.b #30	ENSGT00390000011048.f #31	ENSGT00940000159715 #32	ENSGT00940000161898	ENSGT00390000011737 #34	ENSGT00390000011439 #35	ENSGT00940000162114	ENSGT00390000003838
Arabian camel	MODERN SPECIES	5	LRRC63 (ENSCDRG00005007325)	RUBCNL (ENSCDRG00005007250) #7	LRCH1 (ENSCDRG00005006972) #8	ESD (ENSCDRG00005006888) #9	HTR2A (ENSCDRG00005006846) #10	SUCLA2 (ENSCDRG00005006774) #11	NUDT15 (ENSCDRG00005006741) #12	MED4 (ENSCDRG00005006678) #13	ITM2B (ENSCDRG00005006517) #14	LPAR6 (ENSCDRG00005006495) #16	RB1 (ENSCDRG00005006166) #15	RCBTB2 (ENSCDRG00005006061) #17	CYSLTR2 (ENSCDRG00005006039) #18	FNDC3A (ENSCDRG00005005830) #19	ENSCDRG00005005809	CDADC1 (ENSCDRG00005005787) #22	CAB39L (ENSCDRG00005005746) #23	SETDB2 (ENSCDRG00005005649) #25	PHF11 (ENSCDRG00005005613) #26	RCBTB1 (ENSCDRG00005005547) #27	ARL11 (ENSCDRG00005005538) #28	EBPL (ENSCDRG00005005531) #29	KPNA3 (ENSCDRG00005005457) #30	SPRYD7 (ENSCDRG00005005409) #31	TRIM13 (ENSCDRG00005005392) #32	KCNRG (ENSCDRG00005021727)	DLEU7 (ENSCDRG00005021724) #34	RNASEH2B (ENSCDRG00005021675) #35	ENSCDRG00005021654	C13orf42 (ENSCDRG00005021652)	ENSCDRG00005021649
Alpaca	MODERN SPECIES	3283														FNDC3A (ENSVPAG00000012009) #19	MLNR (ENSVPAG00000012011) #20	CDADC1 (ENSVPAG00000012012) #22	CAB39L (ENSVPAG00000012014) #23	ENSVPAG00000012017 #24	SETDB2 (ENSVPAG00000012019) #25	PHF11 (ENSVPAG00000012021) #26	RCBTB1 (ENSVPAG00000012022) #27	EBPL (ENSVPAG00000012027) #29
Laurasiatheria_b	ANCESTRAL SPECIES	21	ENSGT00710000106860	ENSGT00940000160585 #7	ENSGT00940000159528 #8	ENSGT00390000011864 #9	ENSGT01050000244937.a.a #10	ENSGT00390000010170.a.b #11	ENSGT00390000003338 #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #14	ENSGT00950000183202.b #15	ENSGT01040000240444.A.a.a.a.a #16	ENSGT00940000158925 #17	ENSGT01100000263536.B.c.a #18	ENSGT00940000159319 #19	ENSGT01100000263484.C.a #20	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #25	ENSGT00950000182865.b.a.b.b.b.a #26	ENSGT00940000155814 #27	ENSGT00940000162731 #28	ENSGT00530000063715.b #29	ENSGT01050000244891.C.c.b #30	ENSGT00390000011048.f #31	ENSGT00940000159715 #32	ENSGT00940000161898	ENSGT00390000011737 #34	ENSGT00390000011439 #35	ENSGT00940000162114	ENSGT00390000003838	ENSGT00590000083134.a.a #36
Laurasiatheria_c	ANCESTRAL SPECIES	22	ENSGT00710000106860	ENSGT00940000160585 #7	ENSGT00940000159528 #8	ENSGT00390000011864 #9	ENSGT01050000244937.a.a #10	ENSGT00390000010170.a.b #11	ENSGT00390000003338 #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #14	ENSGT00950000183202.b #15	ENSGT01040000240444.A.a.a.a.a #16	ENSGT00940000158925 #17	ENSGT01100000263536.B.c.a #18	ENSGT00940000159319 #19	ENSGT01100000263484.C.a #20	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #25	ENSGT00950000182865.b.a.b.b.b.a #26	ENSGT00940000155814 #27	ENSGT00940000162731 #28	ENSGT00530000063715.b #29	ENSGT01050000244891.C.c.b #30	ENSGT00390000011048.f #31	ENSGT00940000159715 #32	ENSGT00940000161898	ENSGT00390000011737 #34	ENSGT00390000011439 #35	ENSGT00940000162114	ENSGT00390000003838	ENSGT00590000083134.a.a #36
Equus	ANCESTRAL SPECIES	26	ENSGT00710000106860	ENSGT00940000160585 #7	ENSGT00940000159528 #8	ENSGT00390000011864.k #9	ENSGT01050000244937.a.a #10	ENSGT00390000010170.a.b #11	ENSGT00390000003338 #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #14	ENSGT00950000183202.b #15	ENSGT01040000240444.A.a.a.a.a #16	ENSGT00940000158925 #17	ENSGT01100000263536.B.c.a #18	ENSGT00940000159319 #19	ENSGT01100000263484.C.a #20	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #25	ENSGT00950000182865.b.a.b.b.b.a #26	ENSGT00940000155814 #27	ENSGT00940000162731 #28	ENSGT00530000063715.b #29	ENSGT01050000244891.C.c.b #30	ENSGT00390000011048.f #31	ENSGT00940000159715 #32	ENSGT01100000263511.a.c.b.a.b	ENSGT00390000011737 #34	ENSGT00390000011439 #35	ENSGT00940000162114	ENSGT00390000003838	ENSGT00590000083134.a.a #36
Donkey	MODERN SPECIES	29									ENSEASG00005017162 #14	RB1 (ENSEASG00005017186) #15	LPAR6 (ENSEASG00005027837) #16	RCBTB2 (ENSEASG00005017255) #17	CYSLTR2 (ENSEASG00005031909) #18	FNDC3A (ENSEASG00005017264) #19	MLNR (ENSEASG00005017269) #20	CDADC1 (ENSEASG00005017272) #22	CAB39L (ENSEASG00005017281) #23	ENSEASG00005017284	SETDB2 (ENSEASG00005017285) #25	PHF11 (ENSEASG00005017288) #26	RCBTB1 (ENSEASG00005017291) #27	ARL11 (ENSEASG00005034787) #28	EBPL (ENSEASG00005017294) #29	KPNA3 (ENSEASG00005017295) #30	SPRYD7 (ENSEASG00005034019) #31	TRIM13 (ENSEASG00005032508) #32	ENSEASG00005026329	DLEU7 (ENSEASG00005017321) #34	RNASEH2B (ENSEASG00005017323) #35	ENSEASG00005017325	C13orf42 (ENSEASG00005029220)
Horse	MODERN SPECIES	8	RUBCNL (ENSECAG00000016721) #7	LRCH1 (ENSECAG00000024376) #8	ESD (ENSECAG00000024350) #9	HTR2A (ENSECAG00000024282) #10	SUCLA2 (ENSECAG00000011122) #11	NUDT15 (ENSECAG00000010019) #12	MED4 (ENSECAG00000024240) #13	ITM2B (ENSECAG00000013050) #14	LPAR6 (ENSECAG00000004913) #16	RB1 (ENSECAG00000014575) #15	RCBTB2 (ENSECAG00000022606) #17	CYSLTR2 (ENSECAG00000004678) #18	ENSECAG00000054403	FNDC3A (ENSECAG00000023697) #19	MLNR (ENSECAG00000035160) #20	CDADC1 (ENSECAG00000020688) #22	ENSECAG00000045480	CAB39L (ENSECAG00000000879) #23	SETDB2 (ENSECAG00000020357) #25	PHF11 (ENSECAG00000014972) #26	RCBTB1 (ENSECAG00000021791) #27	ARL11 (ENSECAG00000004611) #28	EBPL (ENSECAG00000021272) #29	KPNA3 (ENSECAG00000015530) #30	SPRYD7 (ENSECAG00000011472) #31	TRIM13 (ENSECAG00000047808) #32	ENSECAG00000059596	DLEU7 (ENSECAG00000006759) #34	RNASEH2B (ENSECAG00000014262) #35	ENSECAG00000000195	C13orf42 (ENSECAG00000033040)
Chiroptera	ANCESTRAL SPECIES	65	ENSGT00710000106860	ENSGT00940000160585 #7	ENSGT00940000159528 #8	ENSGT00390000011864 #9	ENSGT01050000244937.a.a #10	ENSGT00390000010170.a.b #11	ENSGT00390000003338 #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #14	ENSGT00950000183202.b #15	ENSGT01040000240444.A.a.a.a.a #16	ENSGT00940000158925 #17	ENSGT01100000263536.B.c.a #18	ENSGT00940000159319 #19	ENSGT01100000263484.C.a #20	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #25	ENSGT00950000182865.b.a.b.b.b.a #26	ENSGT00940000155814 #27	ENSGT00940000162731 #28	ENSGT00530000063715.b #29	ENSGT01050000244891.C.c.b #30	ENSGT00390000011048.f #31	ENSGT00940000159715 #32	ENSGT00940000161898	ENSGT00390000011737 #34	ENSGT00390000011439 #35	ENSGT00940000162114	ENSGT00390000003838	ENSGT00590000083134.a.a #36
Microchiroptera	ANCESTRAL SPECIES	58	ENSGT00710000106860	ENSGT00940000160585 #7	ENSGT00940000159528 #8	ENSGT00390000011864 #9	ENSGT01050000244937.a.a #10	ENSGT00390000010170.a.b #11	ENSGT00390000003338 #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #14	ENSGT00950000183202.b #15	ENSGT01040000240444.A.a.a.a.a #16	ENSGT00940000158925 #17	ENSGT01100000263536.B.c.a #18	ENSGT00940000159319 #19	ENSGT01100000263484.C.a #20	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #25	ENSGT00950000182865.b.a.b.b.b.a #26	ENSGT00940000155814 #27	ENSGT00940000162731 #28	ENSGT00530000063715.b #29	ENSGT01050000244891.C.c.b #30	ENSGT00390000011048.f #31	ENSGT00940000159715 #32	ENSGT00940000161898	ENSGT00390000011737 #34	ENSGT00390000011439 #35	ENSGT00390000003838	ENSGT00590000083134.a.a #36	ENSGT00940000160941 #37
Greater horseshoe bat	MODERN SPECIES	22	LRCH1 (ENSRFEG00010001090) #8	ENSRFEG00010001044 #9	HTR2A (ENSRFEG00010001008) #10	SUCLA2 (ENSRFEG00010000964) #11	NUDT15 (ENSRFEG00010000941) #12	MED4 (ENSRFEG00010000908) #13	ENSRFEG00010000895	ITM2B (ENSRFEG00010000875) #14	LPAR6 (ENSRFEG00010000857) #16	RB1 (ENSRFEG00010000766) #15	RCBTB2 (ENSRFEG00010000664) #17	CYSLTR2 (ENSRFEG00010000615) #18	ENSRFEG00010000603	FNDC3A (ENSRFEG00010000465) #19	MLNR (ENSRFEG00010000358) #20	CDADC1 (ENSRFEG00010000313) #22	CAB39L (ENSRFEG00010000253) #23	SETDB2 (ENSRFEG00010020537) #25	PHF11 (ENSRFEG00010020499) #26	RCBTB1 (ENSRFEG00010020444) #27	ARL11 (ENSRFEG00010020430) #28	ENSRFEG00010020394 #29	KPNA3 (ENSRFEG00010020282) #30	SPRYD7 (ENSRFEG00010020230) #31	ENSRFEG00010020217	TRIM13 (ENSRFEG00010020213) #32	KCNRG (ENSRFEG00010020187)	DLEU7 (ENSRFEG00010020159) #34	RNASEH2B (ENSRFEG00010020021) #35	C13orf42 (ENSRFEG00010019956)	FAM124A (ENSRFEG00010019925) #36
Microbat	MODERN SPECIES	944	ENSMLUG00000017709	SLC25A30 (ENSMLUG00000000506)	COG3 (ENSMLUG00000016157)	ENSMLUG00000026302	CBY2 (ENSMLUG00000010896)	SIAH3 (ENSMLUG00000029013)	ENSMLUG00000013512	ITM2B (ENSMLUG00000008317) #14	RB1 (ENSMLUG00000008336) #15	LPAR6 (ENSMLUG00000029722) #16	RCBTB2 (ENSMLUG00000008378) #17	ENSMLUG00000023372	CYSLTR2 (ENSMLUG00000001386) #18	FNDC3A (ENSMLUG00000002625) #19	ENSMLUG00000007659 #20	CDADC1 (ENSMLUG00000003033) #22	CAB39L (ENSMLUG00000002144) #23	SETDB2 (ENSMLUG00000004378) #25	PHF11 (ENSMLUG00000009816) #26	RCBTB1 (ENSMLUG00000003275) #27	ARL11 (ENSMLUG00000029560) #28	KPNA3 (ENSMLUG00000003364) #30	SPRYD7 (ENSMLUG00000011053) #31	TRIM13 (ENSMLUG00000029988) #32	KCNRG (ENSMLUG00000008136)	DLEU7 (ENSMLUG00000028199) #34	ENSMLUG00000016558	FAM124A (ENSMLUG00000000843) #36	ENSMLUG00000029387 #37	INTS6 (ENSMLUG00000000852)	WDFY2 (ENSMLUG00000016015)
Megabat	MODERN SPECIES	3748																CDADC1 (ENSPVAG00000003655) #22	CAB39L (ENSPVAG00000003659) #23
Carnivora	ANCESTRAL SPECIES	23	ENSGT00710000106860	ENSGT00940000160585 #7	ENSGT00940000159528 #8	ENSGT00390000011864 #9	ENSGT01050000244937.a.a #10	ENSGT00390000010170.a.b #11	ENSGT00390000003338 #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #14	ENSGT00950000183202.b #15	ENSGT01040000240444.A.a.a.a.a #16	ENSGT00940000158925 #17	ENSGT01100000263536.B.c.a #18	ENSGT00940000159319 #19	ENSGT01100000263484.C.a #20	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #25	ENSGT00950000182865.b.a.b.b.b.a #26	ENSGT00940000155814 #27	ENSGT00940000162731 #28	ENSGT00530000063715.b #29	ENSGT01050000244891.C.c.b #30	ENSGT00390000011048.f #31	ENSGT00940000159715 #32	ENSGT00940000161898	ENSGT00390000011737 #34	ENSGT00390000011439 #35	ENSGT00940000162114	ENSGT00390000003838	ENSGT00590000083134.a.a #36
Felidae	ANCESTRAL SPECIES	23	ENSGT00710000106860	ENSGT00940000160585 #7	ENSGT00940000159528 #8	ENSGT00390000011864.h #9	ENSGT01050000244937.a.a #10	ENSGT00390000010170.a.b.q #11	ENSGT00390000003338 #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #14	ENSGT00950000183202.b #15	ENSGT01040000240444.A.a.a.a.a #16	ENSGT00940000158925 #17	ENSGT01100000263536.B.c.a #18	ENSGT00940000159319 #19	ENSGT01100000263484.C.a #20	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #25	ENSGT00950000182865.b.a.b.b.b.a #26	ENSGT00940000155814 #27	ENSGT00530000063715.b #29	ENSGT01050000244891.C.c.b #30	ENSGT00390000011048.f #31	ENSGT00940000159715 #32	ENSGT00940000161898	ENSGT00390000011737 #34	ENSGT00390000011439 #35	ENSGT00940000162114	ENSGT00390000003838	ENSGT00590000083134.a.a #36	ENSGT00940000160941 #37
Panthera	ANCESTRAL SPECIES	21	ENSGT00950000183097.a.a.b	ENSGT00710000106860	ENSGT00940000160585 #7	ENSGT00940000159528 #8	ENSGT00390000011864.h #9	ENSGT01050000244937.a.a #10	ENSGT00390000010170.a.b.q #11	ENSGT00390000003338 #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #14	ENSGT00950000183202.b #15	ENSGT01040000240444.A.a.a.a.a #16	ENSGT00940000158925 #17	ENSGT00940000159319 #19	ENSGT01100000263484.C.a #20	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #25	ENSGT00950000182865.b.a.b.b.b.a #26	ENSGT00940000155814 #27	ENSGT00530000063715.b #29	ENSGT01050000244891.C.c.b #30	ENSGT00390000011048.f #31	ENSGT00940000159715 #32	ENSGT00940000161898	ENSGT00390000011737 #34	ENSGT00390000011439 #35	ENSGT00940000162114	ENSGT00390000003838	ENSGT00590000083134.a.a #36	ENSGT00940000160941 #37
Tiger	MODERN SPECIES	575																CDADC1 (ENSPTIG00000009716) #22	CAB39L (ENSPTIG00000008619) #23	SETDB2 (ENSPTIG00000006314) #25	PHF11 (ENSPTIG00000002834) #26	RCBTB1 (ENSPTIG00000019455) #27	EBPL (ENSPTIG00000018009) #29	KPNA3 (ENSPTIG00000016265) #30	SPRYD7 (ENSPTIG00000015830) #31	TRIM13 (ENSPTIG00000002828) #32	KCNRG (ENSPTIG00000014997)	RNASEH2B (ENSPTIG00000013918) #35	ENSPTIG00000012873	C13orf42 (ENSPTIG00000011878)	FAM124A (ENSPTIG00000011118) #36	SERPINE3 (ENSPTIG00000010165) #37	INTS6 (ENSPTIG00000006964)
Panthera_a	ANCESTRAL SPECIES	23	ENSGT00710000106860	ENSGT00940000160585 #7	ENSGT00940000159528 #8	ENSGT00390000011864.h #9	ENSGT01050000244937.a.a #10	ENSGT00390000010170.a.b.q #11	ENSGT00390000003338 #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #14	ENSGT00950000183202.b #15	ENSGT01040000240444.A.a.a.a.a #16	ENSGT00940000158925 #17	ENSGT01100000263536.B.c.a #18	ENSGT00940000159319 #19	ENSGT01100000263484.C.a #20	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #25	ENSGT00950000182865.b.a.b.b.b.a #26	ENSGT00940000155814 #27	ENSGT00530000063715.b #29	ENSGT01050000244891.C.c.b #30	ENSGT00390000011048.f #31	ENSGT00940000159715 #32	ENSGT00940000161898	ENSGT00390000011737 #34	ENSGT00390000011439 #35	ENSGT00940000162114	ENSGT00390000003838	ENSGT00590000083134.a.a #36	ENSGT00940000160941 #37
leopard	MODERN SPECIES	14	LCP1 (ENSPPRG00000003176)	LRRC63 (ENSPPRG00000001903)	RUBCNL (ENSPPRG00000000386) #7	LRCH1 (ENSPPRG00000015849) #8	ENSPPRG00000012285 #9	HTR2A (ENSPPRG00000011866) #10	ENSPPRG00000011431	ENSPPRG00000011389 #11	NUDT15 (ENSPPRG00000010318) #12	MED4 (ENSPPRG00000009988) #13	ITM2B (ENSPPRG00000009808) #14	RB1 (ENSPPRG00000008573) #15	RCBTB2 (ENSPPRG00000005884) #17	FNDC3A (ENSPPRG00000003779) #19	MLNR (ENSPPRG00000002089) #20	CDADC1 (ENSPPRG00000001969) #22	CAB39L (ENSPPRG00000001618) #23	SETDB2 (ENSPPRG00000000069) #25	PHF11 (ENSPPRG00000023438) #26	RCBTB1 (ENSPPRG00000023734) #27	EBPL (ENSPPRG00000020311) #29	KPNA3 (ENSPPRG00000015323) #30	SPRYD7 (ENSPPRG00000014014) #31	TRIM13 (ENSPPRG00000014965) #32	KCNRG (ENSPPRG00000013117)	DLEU7 (ENSPPRG00000012760) #34	RNASEH2B (ENSPPRG00000012450) #35	ENSPPRG00000011237	C13orf42 (ENSPPRG00000010617)	FAM124A (ENSPPRG00000010260) #36	SERPINE3 (ENSPPRG00000009827) #37
lion	MODERN SPECIES	117														FNDC3A (ENSPLOG00000008901) #19	MLNR (ENSPLOG00000008837) #20	CDADC1 (ENSPLOG00000008771) #22
Cat	MODERN SPECIES		RUBCNL (ENSFCAG00000010241) #7	LRCH1 (ENSFCAG00000034620) #8	ESD (ENSFCAG00000026826) #9	HTR2A (ENSFCAG00000036489) #10	ENSFCAG00000026862	SUCLA2 (ENSFCAG00000031559) #11	NUDT15 (ENSFCAG00000035004) #12	MED4 (ENSFCAG00000015321) #13	ITM2B (ENSFCAG00000039896) #14	LPAR6 (ENSFCAG00000006998) #16	RB1 (ENSFCAG00000024529) #15	RCBTB2 (ENSFCAG00000006999) #17	CYSLTR2 (ENSFCAG00000040666) #18	FNDC3A (ENSFCAG00000030680) #19	MLNR (ENSFCAG00000014268) #20	CDADC1 (ENSFCAG00000014269) #22	CAB39L (ENSFCAG00000014270) #23	SETDB2 (ENSFCAG00000012034) #25	PHF11 (ENSFCAG00000013097) #26	RCBTB1 (ENSFCAG00000044002) #27	EBPL (ENSFCAG00000033196) #29	KPNA3 (ENSFCAG00000023386) #30	SPRYD7 (ENSFCAG00000023216) #31	TRIM13 (ENSFCAG00000028107) #32	KCNRG (ENSFCAG00000031784)	RNASEH2B (ENSFCAG00000014257) #35	ENSFCAG00000014259	C13orf42 (ENSFCAG00000040832)	FAM124A (ENSFCAG00000043387) #36	SERPINE3 (ENSFCAG00000018195) #37	INTS6 (ENSFCAG00000030967)
Caniformia	ANCESTRAL SPECIES	24	ENSGT00710000106860	ENSGT00940000160585 #7	ENSGT00940000159528 #8	ENSGT00390000011864 #9	ENSGT01050000244937.a.a #10	ENSGT00390000010170.a.b #11	ENSGT00390000003338 #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #14	ENSGT00950000183202.b #15	ENSGT01040000240444.A.a.a.a.a #16	ENSGT00940000158925 #17	ENSGT01100000263536.B.c.a #18	ENSGT00940000159319 #19	ENSGT01100000263484.C.a #20	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #25	ENSGT00950000182865.b.a.b.b.b.a #26	ENSGT00940000155814 #27	ENSGT00940000162731 #28	ENSGT00530000063715.b #29	ENSGT01050000244891.C.c.b #30	ENSGT00390000011048.f #31	ENSGT00940000159715 #32	ENSGT00940000161898	ENSGT00390000011737 #34	ENSGT00390000011439 #35	ENSGT00940000162114	ENSGT00390000003838	ENSGT00590000083134.a.a #36
Caniformia_b	ANCESTRAL SPECIES	26	ENSGT00710000106860	ENSGT00940000160585 #7	ENSGT00940000159528 #8	ENSGT00390000011864 #9	ENSGT01050000244937.a.a #10	ENSGT00390000010170.a.b #11	ENSGT00390000003338 #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #14	ENSGT00950000183202.b #15	ENSGT01040000240444.A.a.a.a.a #16	ENSGT00940000158925 #17	ENSGT01100000263536.B.c.a #18	ENSGT00940000159319 #19	ENSGT01100000263484.C.a #20	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #25	ENSGT00950000182865.b.a.b.b.b.a #26	ENSGT00940000155814 #27	ENSGT00940000162731 #28	ENSGT00530000063715.b #29	ENSGT01050000244891.C.c.b #30	ENSGT00390000011048.f #31	ENSGT00940000159715 #32	ENSGT00940000161898	ENSGT00390000011737 #34	ENSGT00390000011439 #35	ENSGT00940000162114	ENSGT00390000003838	ENSGT00590000083134.a.a #36
Ursidae	ANCESTRAL SPECIES	27	ENSGT00710000106860	ENSGT00940000160585 #7	ENSGT00940000159528 #8	ENSGT00390000011864 #9	ENSGT01050000244937.a.a #10	ENSGT00390000010170.a.b.t #11	ENSGT00390000003338 #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a.j #14	ENSGT00950000183202.b #15	ENSGT01040000240444.A.a.a.a.a #16	ENSGT00940000158925 #17	ENSGT01100000263536.B.c.a #18	ENSGT00940000159319 #19	ENSGT01100000263484.C.a #20	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #25	ENSGT00950000182865.b.a.b.b.b.a #26	ENSGT00940000155814 #27	ENSGT00940000162731 #28	ENSGT00530000063715.b #29	ENSGT01050000244891.C.c.b #30	ENSGT00390000011048.f #31	ENSGT00940000159715 #32	ENSGT00940000161898	ENSGT00390000011737 #34	ENSGT00390000011439 #35	ENSGT00940000162114	ENSGT00390000003838	ENSGT00590000083134.a.a #36
Ursus	ANCESTRAL SPECIES	62	ENSGT00710000106860	ENSGT00940000160585 #7	ENSGT00940000159528 #8	ENSGT00390000011864 #9	ENSGT01050000244937.a.a #10	ENSGT00390000010170.a.b.t #11	ENSGT00390000003338 #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a.j #14	ENSGT00950000183202.b #15	ENSGT01040000240444.A.a.a.a.a #16	ENSGT00940000158925 #17	ENSGT01100000263536.B.c.a #18	ENSGT00940000159319 #19	ENSGT01100000263484.C.a #20	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #25	ENSGT00950000182865.b.a.b.b.b.a #26	ENSGT00940000155814 #27	ENSGT00940000162731 #28	ENSGT00530000063715.b #29	ENSGT01050000244891.C.c.b #30	ENSGT00390000011048.f #31	ENSGT00940000159715 #32	ENSGT00940000161898	ENSGT00390000011737 #34	ENSGT00390000011439 #35	ENSGT00940000162114	ENSGT00590000083134.a.a #36	ENSGT00940000160941 #37
Polar bear	MODERN SPECIES	297	LCP1 (ENSUMAG00000016365)	LRRC63 (ENSUMAG00000017071)	RUBCNL (ENSUMAG00000017084) #7	LRCH1 (ENSUMAG00000017098) #8	ESD (ENSUMAG00000017188) #9	HTR2A (ENSUMAG00000017217) #10	SUCLA2 (ENSUMAG00000017396) #11	NUDT15 (ENSUMAG00000017950) #12	MED4 (ENSUMAG00000017955) #13	ITM2B (ENSUMAG00000017977) #14	RB1 (ENSUMAG00000018061) #15	LPAR6 (ENSUMAG00000018323) #16	RCBTB2 (ENSUMAG00000018329) #17	CYSLTR2 (ENSUMAG00000018356) #18	FNDC3A (ENSUMAG00000018363) #19	CDADC1 (ENSUMAG00000018372) #22	CAB39L (ENSUMAG00000018400) #23	SETDB2 (ENSUMAG00000018406) #25	PHF11 (ENSUMAG00000018410) #26	RCBTB1 (ENSUMAG00000018418) #27	ARL11 (ENSUMAG00000018435) #28	ENSUMAG00000018437	EBPL (ENSUMAG00000018439) #29	KPNA3 (ENSUMAG00000018450) #30	ENSUMAG00000018458 #31	TRIM13 (ENSUMAG00000018465) #32	KCNRG (ENSUMAG00000018468)	RNASEH2B (ENSUMAG00000018556) #35	ENSUMAG00000018627	FAM124A (ENSUMAG00000018662) #36	SERPINE3 (ENSUMAG00000018670) #37
American black bear	MODERN SPECIES	689														FNDC3A (ENSUAMG00000005934) #19	MLNR (ENSUAMG00000005931) #20	CDADC1 (ENSUAMG00000005913) #22	CAB39L (ENSUAMG00000005909) #23
Giant Panda	MODERN SPECIES	17	LRRC63 (ENSAMEG00000013282)	RUBCNL (ENSAMEG00000013284) #7	LRCH1 (ENSAMEG00000013313) #8	ESD (ENSAMEG00000013377) #9	HTR2A (ENSAMEG00000025689) #10	SUCLA2 (ENSAMEG00000003745) #11	ENSAMEG00000003735 #12	MED4 (ENSAMEG00000003718) #13	ITM2B (ENSAMEG00000003662) #14	LPAR6 (ENSAMEG00000018637) #16	RB1 (ENSAMEG00000003640) #15	RCBTB2 (ENSAMEG00000003585) #17	CYSLTR2 (ENSAMEG00000018628) #18	FNDC3A (ENSAMEG00000003537) #19	MLNR (ENSAMEG00000003522) #20	CDADC1 (ENSAMEG00000003499) #22	CAB39L (ENSAMEG00000003487) #23	SETDB2 (ENSAMEG00000003443) #25	PHF11 (ENSAMEG00000026091) #26	RCBTB1 (ENSAMEG00000002770) #27	ARL11 (ENSAMEG00000002767) #28	EBPL (ENSAMEG00000002764) #29	KPNA3 (ENSAMEG00000004834) #30	SPRYD7 (ENSAMEG00000024680) #31	TRIM13 (ENSAMEG00000019144) #32	KCNRG (ENSAMEG00000029937)	DLEU7 (ENSAMEG00000031072) #34	RNASEH2B (ENSAMEG00000012040) #35	ENSAMEG00000012012	C13orf42 (ENSAMEG00000030295)	FAM124A (ENSAMEG00000012007) #36
Mustelinae	ANCESTRAL SPECIES	71	ENSGT00710000106860	ENSGT00940000160585 #7	ENSGT00940000159528 #8	ENSGT00390000011864 #9	ENSGT01050000244937.a.a #10	ENSGT00390000010170.a.b #11	ENSGT00390000003338 #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #14	ENSGT00950000183202.b #15	ENSGT01040000240444.A.a.a.a.a #16	ENSGT00940000158925 #17	ENSGT01100000263536.B.c.a #18	ENSGT00940000159319 #19	ENSGT01100000263484.C.a #20	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #25	ENSGT00950000182865.b.a.b.b.b.a #26	ENSGT00940000155814 #27	ENSGT00940000162731 #28	ENSGT00530000063715.b #29	ENSGT01050000244891.C.c.b #30	ENSGT00390000011048.f #31	ENSGT00940000159715 #32	ENSGT00940000161898	ENSGT00390000011737 #34	ENSGT00390000011439 #35	ENSGT00940000162114	ENSGT00390000003838	ENSGT00590000083134.a.a #36
Ferret	MODERN SPECIES	371														FNDC3A (ENSMPUG00000018023) #19	MLNR (ENSMPUG00000018022) #20	CDADC1 (ENSMPUG00000018021) #22	CAB39L (ENSMPUG00000018020) #23	SETDB2 (ENSMPUG00000018019) #25	PHF11 (ENSMPUG00000018018) #26	RCBTB1 (ENSMPUG00000018017) #27	ARL11 (ENSMPUG00000018376) #28	EBPL (ENSMPUG00000018016) #29	KPNA3 (ENSMPUG00000018015) #30	SPRYD7 (ENSMPUG00000018014) #31	TRIM13 (ENSMPUG00000018013) #32	ENSMPUG00000018012	DLEU7 (ENSMPUG00000018011) #34	RNASEH2B (ENSMPUG00000018010) #35	ENSMPUG00000018009	FAM124A (ENSMPUG00000018008) #36	ENSMPUG00000018007
American mink	MODERN SPECIES	143						SUCLA2 (ENSNVIG00000011068) #11	NUDT15 (ENSNVIG00000011088) #12	MED4 (ENSNVIG00000011094) #13	ITM2B (ENSNVIG00000011114) #14	RB1 (ENSNVIG00000011152) #15	LPAR6 (ENSNVIG00000011245) #16	RCBTB2 (ENSNVIG00000011257) #17	CYSLTR2 (ENSNVIG00000011311) #18	FNDC3A (ENSNVIG00000011325) #19	MLNR (ENSNVIG00000011471) #20	CDADC1 (ENSNVIG00000011480) #22	CAB39L (ENSNVIG00000011562) #23	SETDB2 (ENSNVIG00000011619) #25	PHF11 (ENSNVIG00000011653) #26	RCBTB1 (ENSNVIG00000011679) #27	ARL11 (ENSNVIG00000011736) #28	ENSNVIG00000011744	KPNA3 (ENSNVIG00000011752) #30	SPRY7 (ENSNVIG00000011792) #31	TRIM13 (ENSNVIG00000011831) #32	KCNRG (ENSNVIG00000011840)	ENSNVIG00000011940	DLEU7 (ENSNVIG00000011945) #34	RNASEH2B (ENSNVIG00000011978) #35	ENSNVIG00000012115	C13orf42 (ENSNVIG00000012138)
Canidae	ANCESTRAL SPECIES	38	ENSGT00710000106860	ENSGT00940000160585 #7	ENSGT00940000159528 #8	ENSGT00390000011864 #9	ENSGT01050000244937.a.a #10	ENSGT00390000010170.a.b #11	ENSGT00390000003338 #12	ENSGT00390000012063.h #13	ENSGT00950000183115.b.a #14	ENSGT01040000240444.A.a.a.a.a #16	ENSGT00950000183202.b #15	ENSGT00940000158925 #17	ENSGT01100000263536.B.c.a #18	ENSGT00940000159319 #19	ENSGT01100000263484.C.a #20	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #25	ENSGT00950000182865.b.a.b.b.b.a #26	ENSGT00940000155814 #27	ENSGT00530000063715.b #29	ENSGT01050000244891.C.c.b #30	ENSGT00390000011048.f #31	ENSGT00940000159715 #32	ENSGT00940000161898	ENSGT00390000011439 #35	ENSGT00940000162114	ENSGT00590000083134.a.a #36	ENSGT00940000160941 #37	ENSGT00390000016655.a.a.b	ENSGT00940000158527
Canis_lupus	ANCESTRAL SPECIES	35	ENSGT00710000106860	ENSGT00940000160585 #7	ENSGT00940000159528 #8	ENSGT00390000011864 #9	ENSGT01050000244937.a.a #10	ENSGT00390000010170.a.b #11	ENSGT00390000003338 #12	ENSGT00390000012063.h #13	ENSGT00950000183115.b.a #14	ENSGT00950000183202.b #15	ENSGT01040000240444.A.a.a.a.a #16	ENSGT00940000158925 #17	ENSGT01100000263536.B.c.a #18	ENSGT00940000159319 #19	ENSGT01100000263484.C.a #20	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #25	ENSGT00950000182865.b.a.b.b.b.a #26	ENSGT00940000155814 #27	ENSGT00530000063715.b #29	ENSGT01050000244891.C.c.b #30	ENSGT00390000011048.f #31	ENSGT00940000159715 #32	ENSGT00940000161898	ENSGT00390000011439 #35	ENSGT00940000162114	ENSGT00590000083134.a.a #36	ENSGT00940000160941 #37	ENSGT00390000016655.a.a.b	ENSGT00940000158527
Dog	MODERN SPECIES	14	HTR2A (ENSCAFG00845007028) #10	ENSCAFG00845006976	ENSCAFG00845006950	ENSCAFG00845006932	SUCLA2 (ENSCAFG00845006827) #11	NUDT15 (ENSCAFG00845006770) #12	MED4 (ENSCAFG00845006629) #13	ITM2B (ENSCAFG00845006529) #14	ENSCAFG00845026714 #16	ENSCAFG00845026699 #16	RB1 (ENSCAFG00845025645) #15	RCBTB2 (ENSCAFG00845025268) #17	CYSLTR2 (ENSCAFG00845025181) #18	FNDC3A (ENSCAFG00845024522) #19	MLNR (ENSCAFG00845024409) #20	CDADC1 (ENSCAFG00845024154) #22	CAB39L (ENSCAFG00845024041) #23	SETDB2 (ENSCAFG00845023636) #25	SETDB2 (ENSCAFG00845023394) #26	RCBTB1 (ENSCAFG00845023241) #27	ENSCAFG00845023177	ENSCAFG00845023073 #29	KPNA3 (ENSCAFG00845022909) #30	SPRYD7 (ENSCAFG00845022814) #31	TRIM13 (ENSCAFG00845022686) #32	RNASEH2B (ENSCAFG00845022142) #35	ENSCAFG00845021910	ENSCAFG00845021832 #36	SERPINE3 (ENSCAFG00845021761) #37	INTS6 (ENSCAFG00845021506)	WDFY2 (ENSCAFG00845021352)
Dingo	MODERN SPECIES	7	ENSCAFG00020019395	ENSCAFG00020019401	ENSCAFG00020019402	ENSCAFG00020019404	ENSCAFG00020019406	SUCLA2 (ENSCAFG00020019425) #11	NUDT15 (ENSCAFG00020019998) #12	ENSCAFG00020020001 #13	ITM2B (ENSCAFG00020020009) #14	RB1 (ENSCAFG00020020016) #15	LPAR6 (ENSCAFG00020020122) #16	RCBTB2 (ENSCAFG00020020123) #17	CYSLTR2 (ENSCAFG00020020126) #18	FNDC3A (ENSCAFG00020020131) #19	MLNR (ENSCAFG00020020252) #20	CDADC1 (ENSCAFG00020020254) #22	CAB39L (ENSCAFG00020020273) #23	SETDB2 (ENSCAFG00020020283) #25	PHF11 (ENSCAFG00020020287) #26	RCBTB1 (ENSCAFG00020020302) #27	EBPL (ENSCAFG00020020382) #29	KPNA3 (ENSCAFG00020020398) #30	SPRYD7 (ENSCAFG00020021570) #31	TRIM13 (ENSCAFG00020021573) #32	KCNRG (ENSCAFG00020021574)	RNASEH2B (ENSCAFG00020000250) #35	ENSCAFG00020000263	SERPINE3 (ENSCAFG00020000330) #37	INTS6 (ENSCAFG00020000372)	WDFY2 (ENSCAFG00020000388)	CCDC70 (ENSCAFG00020000401)
Red fox	MODERN SPECIES	133	ESD (ENSVVUG00000028341) #9	HTR2A (ENSVVUG00000028338) #10	ENSVVUG00000028335	ENSVVUG00000028325	SUCLA2 (ENSVVUG00000028321) #11	NUDT15 (ENSVVUG00000028320) #12	MED4 (ENSVVUG00000028319) #13	ITM2B (ENSVVUG00000028315) #14	LPAR6 (ENSVVUG00000028313) #16	RB1 (ENSVVUG00000028308) #15	RCBTB2 (ENSVVUG00000028249) #17	CYSLTR2 (ENSVVUG00000028233) #18	FNDC3A (ENSVVUG00000028213) #19	MLNR (ENSVVUG00000028204) #20	ENSVVUG00000028200	CDADC1 (ENSVVUG00000028192) #22	CAB39L (ENSVVUG00000028181) #23	SETDB2 (ENSVVUG00000028174) #25	PHF11 (ENSVVUG00000028159) #26	RCBTB1 (ENSVVUG00000028145) #27	ENSVVUG00000028141	KPNA3 (ENSVVUG00000028134) #30	SPRYD7 (ENSVVUG00000028130) #31	ENSVVUG00000028128	TRIM13 (ENSVVUG00000028126) #32
Atlantogenata	ANCESTRAL SPECIES	27	ENSGT00710000106860	ENSGT00940000160585 #7	ENSGT00940000159528 #8	ENSGT00390000011864 #9	ENSGT01050000244937.a.a #10	ENSGT00390000010170.a.b #11	ENSGT00390000003338 #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #14	ENSGT00950000183202.b #15	ENSGT01040000240444.A.a.a.a.a #16	ENSGT00940000158925 #17	ENSGT01100000263536.B.c.a #18	ENSGT00940000159319 #19	ENSGT01100000263484.C.a #20	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #25	ENSGT00950000182865.b.a.b.b.b.a #26	ENSGT00940000155814 #27	ENSGT00940000162731 #28	ENSGT00530000063715.b #29	ENSGT01050000244891.C.c.b #30	ENSGT00390000011048 #31	ENSGT00940000159715 #32	ENSGT00940000161898	ENSGT00390000011439 #35	ENSGT00940000162114	ENSGT00590000083134.a.a #36	ENSGT00940000160941 #37	ENSGT00390000016655.a.a.b
Afrotheria	ANCESTRAL SPECIES	54	ENSGT00710000106860	ENSGT00940000160585 #7	ENSGT00940000159528 #8	ENSGT00390000011864 #9	ENSGT01050000244937.a.a #10	ENSGT00390000010170.a.b #11	ENSGT00390000003338 #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #14	ENSGT00950000183202.b #15	ENSGT01040000240444.A.a.a.a.a #16	ENSGT00940000158925 #17	ENSGT01100000263536.B.c.a #18	ENSGT00940000159319 #19	ENSGT01100000263484.C.a #20	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #25	ENSGT00950000182865.b.a.b.b.b.a #26	ENSGT00940000155814 #27	ENSGT00940000162731 #28	ENSGT00530000063715.b #29	ENSGT01050000244891.C.c.b #30	ENSGT00390000011048 #31	ENSGT00940000159715 #32	ENSGT00940000161898	ENSGT00390000011439 #35	ENSGT00940000162114	ENSGT00590000083134.a.a #36	ENSGT00940000160941 #37	ENSGT00390000016655.a.a.b
Tenrec	MODERN SPECIES	581																CDADC1 (ENSETEG00000007367) #22
Afrotheria_a	ANCESTRAL SPECIES	52	ENSGT00710000106860	ENSGT00940000160585 #7	ENSGT00940000159528 #8	ENSGT00390000011864 #9	ENSGT01050000244937.a.a #10	ENSGT00390000010170.a.b #11	ENSGT00390000003338 #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #14	ENSGT00950000183202.b #15	ENSGT01040000240444.A.a.a.a.a #16	ENSGT00940000158925 #17	ENSGT01100000263536.B.c.a #18	ENSGT00940000159319 #19	ENSGT01100000263484.C.a #20	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #25	ENSGT00950000182865.b.a.b.b.b.a #26	ENSGT00940000155814 #27	ENSGT00940000162731 #28	ENSGT00530000063715.b #29	ENSGT01050000244891.C.c.b #30	ENSGT00390000011048 #31	ENSGT00940000159715 #32	ENSGT00940000161898	ENSGT00390000011439 #35	ENSGT00940000162114	ENSGT00590000083134.a.a #36	ENSGT00940000160941 #37	ENSGT00390000016655.a.a.b
Elephant	MODERN SPECIES	239	RUBCNL (ENSLAFG00000014959) #7	LRCH1 (ENSLAFG00000006893) #8	ESD (ENSLAFG00000006901) #9	HTR2A (ENSLAFG00000015014) #10	SUCLA2 (ENSLAFG00000009678) #11	ENSLAFG00000027647	NUDT15 (ENSLAFG00000017248) #12	MED4 (ENSLAFG00000000347) #13	ITM2B (ENSLAFG00000004943) #14	RB1 (ENSLAFG00000013579) #15	LPAR6 (ENSLAFG00000031818) #16	RCBTB2 (ENSLAFG00000015596) #17	CYSLTR2 (ENSLAFG00000011232) #18	FNDC3A (ENSLAFG00000016935) #19	MLNR (ENSLAFG00000004763) #20	CDADC1 (ENSLAFG00000012861) #22	CAB39L (ENSLAFG00000018080) #23	SETDB2 (ENSLAFG00000012612) #25	PHF11 (ENSLAFG00000014189) #26	RCBTB1 (ENSLAFG00000014193) #27	ARL11 (ENSLAFG00000001838) #28	EBPL (ENSLAFG00000017971) #29	KPNA3 (ENSLAFG00000001298) #30	SPRYD7 (ENSLAFG00000004635) #31	TRIM13 (ENSLAFG00000029759) #32	KCNRG (ENSLAFG00000000702)	RNASEH2B (ENSLAFG00000030158) #35	ENSLAFG00000016562	FAM124A (ENSLAFG00000013090) #36	SERPINE3 (ENSLAFG00000023229) #37	INTS6 (ENSLAFG00000008496)
Hyrax	MODERN SPECIES	424																CDADC1 (ENSPCAG00000005477) #22
Xenarthra	ANCESTRAL SPECIES																	ENSGT00940000153676.b #22
Sloth	MODERN SPECIES	473																CDADC1 (ENSCHOG00000001642) #22
Armadillo	MODERN SPECIES	3810											ENSDNOG00000007441	ENSDNOG00000038087	BRINP2 (ENSDNOG00000036555)	ENSDNOG00000044709	SEC16B (ENSDNOG00000008336)	CDADC1 (ENSDNOG00000006418) #22	ENSDNOG00000047847	RASAL2 (ENSDNOG00000007919)	ENSDNOG00000034274	TEX35 (ENSDNOG00000018108)	RALGPS2 (ENSDNOG00000001836)	ANGPTL1 (ENSDNOG00000031349)	FAM20B (ENSDNOG00000049181)	TOR3A (ENSDNOG00000018172)	ABL2 (ENSDNOG00000037053)	ENSDNOG00000024026	ENSDNOG00000037146
Marsupialia	ANCESTRAL SPECIES	5	ENSGT00940000160585 #7	ENSGT00940000159528 #8	ENSGT00390000011864 #9	ENSGT01050000244937.a.a #10	ENSGT00390000010170.a.b #11	ENSGT00390000003338 #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #14	ENSGT00950000183202.b #15	ENSGT01040000240444.A.a.a.a.a #16	ENSGT00940000158925 #17	ENSGT00990000203619.B	ENSGT00970000197615	ENSGT00940000159319 #19	ENSGT01100000263484.C.a #20	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #25	ENSGT00950000182865.b.a.b.b.b.a #26	ENSGT00940000155814 #27	ENSGT00940000162731 #28	ENSGT00530000063715.b #29	ENSGT01050000244891.C.c.b #30	ENSGT00390000011048 #31	ENSGT00940000159715 #32	ENSGT00940000161898	ENSGT00390000011737 #34	ENSGT00390000011439 #35	ENSGT00940000162114	ENSGT00590000083134.a.a #36	ENSGT00940000160941 #37
Opossum	MODERN SPECIES	3	HTR2A (ENSMODG00000011274) #10	SUCLA2 (ENSMODG00000011236) #11	ENSMODG00000029176	NUDT15 (ENSMODG00000039008) #12	ENSMODG00000011215	MED4 (ENSMODG00000011210) #13	ENSMODG00000051554	ENSMODG00000011189 #14	LPAR6 (ENSMODG00000011179) #16	RB1 (ENSMODG00000011168) #15	RCBTB2 (ENSMODG00000011140) #17	ENSMODG00000024101	ENSMODG00000048969	FNDC3A (ENSMODG00000011079) #19	MLNR (ENSMODG00000011007) #20	CDADC1 (ENSMODG00000010997) #22	CAB39L (ENSMODG00000010950) #23	SETDB2 (ENSMODG00000010929) #25	ENSMODG00000047466	ENSMODG00000027544 #26	RCBTB1 (ENSMODG00000010861) #27	ARL11 (ENSMODG00000024105) #28	EBPL (ENSMODG00000039408) #29	KPNA3 (ENSMODG00000010829) #30	ENSMODG00000010799 #31	TRIM13 (ENSMODG00000024106) #32	DLEU7 (ENSMODG00000010784) #34	RNASEH2B (ENSMODG00000010775) #35	ENSMODG00000010760	FAM124A (ENSMODG00000010734) #36	ENSMODG00000027988 #37
Marsupialia_b	ANCESTRAL SPECIES	20	ENSGT00940000160585 #7	ENSGT00940000159528 #8	ENSGT00390000011864 #9	ENSGT01050000244937.a.a #10	ENSGT00390000010170.a.b #11	ENSGT00390000003338 #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #14	ENSGT00950000183202.b #15	ENSGT01040000240444.A.a.a.a.a #16	ENSGT00940000158925 #17	ENSGT00990000203619.B	ENSGT00970000197615	ENSGT00940000159319 #19	ENSGT01100000263484.C.a #20	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #25	ENSGT00950000182865.b.a.b.b.b.a #26	ENSGT00940000155814 #27	ENSGT00940000162731 #28	ENSGT00530000063715.b #29	ENSGT01050000244891.C.c.b #30	ENSGT00390000011048 #31	ENSGT00940000159715 #32	ENSGT00940000161898	ENSGT00390000011737 #34	ENSGT00390000011439 #35	ENSGT00940000162114	ENSGT00590000083134.a.a #36	ENSGT00940000160941 #37
Tasmanian devil	MODERN SPECIES	2	LRCH1 (ENSSHAG00000009981) #8	ESD (ENSSHAG00000024732) #9	HTR2A (ENSSHAG00000008685) #10	SUCLA2 (ENSSHAG00000006415) #11	NUDT15 (ENSSHAG00000022268) #12	MED4 (ENSSHAG00000005253) #13	ENSSHAG00000005331	ITM2B (ENSSHAG00000014885) #14	RB1 (ENSSHAG00000014024) #15	LPAR6 (ENSSHAG00000027480) #16	RCBTB2 (ENSSHAG00000013842) #17	ENSSHAG00000012802	ENSSHAG00000023617	FNDC3A (ENSSHAG00000010067) #19	ENSSHAG00000030574	CDADC1 (ENSSHAG00000009406) #22	CAB39L (ENSSHAG00000029616) #23	SETDB2 (ENSSHAG00000007281) #25	RCBTB1 (ENSSHAG00000005837) #27	ARL11 (ENSSHAG00000004853) #28	EBPL (ENSSHAG00000026290) #29	KPNA3 (ENSSHAG00000002380) #30	SPRYD7 (ENSSHAG00000032291) #31	TRIM13 (ENSSHAG00000027943) #32	ENSSHAG00000026893 #34	RNASEH2B (ENSSHAG00000016190) #35	ENSSHAG00000015825	ENSSHAG00000025257	FAM124A (ENSSHAG00000030020) #36	SERPINE3 (ENSSHAG00000014618) #37	INTS6 (ENSSHAG00000023547)
Diprotodontia	ANCESTRAL SPECIES	24	ENSGT00940000159528 #8	ENSGT00390000011864 #9	ENSGT01050000244937.a.a #10	ENSGT00390000010170.a.b #11	ENSGT00390000003338 #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #14	ENSGT00950000183202.b #15	ENSGT01040000240444.A.a.a.a.a #16	ENSGT00940000158925 #17	ENSGT01100000263536.B.c.a #18	ENSGT00990000203619.B	ENSGT00970000197615	ENSGT00940000159319 #19	ENSGT01100000263484.C.a #20	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #25	ENSGT00950000182865.b.a.b.b.b.a #26	ENSGT00940000155814 #27	ENSGT00940000162731 #28	ENSGT00530000063715.b #29	ENSGT01050000244891.C.c.b #30	ENSGT00390000011048 #31	ENSGT00940000159715 #32	ENSGT00940000161898	ENSGT00390000011737 #34	ENSGT00390000011439 #35	ENSGT00940000162114	ENSGT00590000083134.a.a #36	ENSGT00940000160941 #37
Diprotodontia_a	ANCESTRAL SPECIES	25	ENSGT00940000159528 #8	ENSGT00390000011864 #9	ENSGT01050000244937.a.a #10	ENSGT00390000010170.a.b #11	ENSGT00390000003338 #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #14	ENSGT00950000183202.b #15	ENSGT01040000240444.A.a.a.a.a #16	ENSGT00940000158925 #17	ENSGT01100000263536.B.c.a #18	ENSGT00990000203619.B	ENSGT00970000197615	ENSGT00940000159319 #19	ENSGT01100000263484.C.a #20	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #25	ENSGT00950000182865.b.a.b.b.b.a #26	ENSGT00940000155814 #27	ENSGT00940000162731 #28	ENSGT00530000063715.b #29	ENSGT01050000244891.C.c.b #30	ENSGT00390000011048 #31	ENSGT00940000159715 #32	ENSGT00940000161898	ENSGT00390000011737 #34	ENSGT00390000011439 #35	ENSGT00940000162114	ENSGT00590000083134.a.a #36	ENSGT00940000160941 #37
koala	MODERN SPECIES	53	HTR2A (ENSPCIG00000006885) #10	SUCLA2 (ENSPCIG00000016781) #11	ZCRB1 (ENSPCIG00000029300)	NUDT15 (ENSPCIG00000029301) #12	MED4 (ENSPCIG00000029302) #13	ENSPCIG00000029305	ITM2B (ENSPCIG00000029306) #14	RB1 (ENSPCIG00000029307) #15	LPAR6 (ENSPCIG00000029308) #16	RCBTB2 (ENSPCIG00000029309) #17	ENSPCIG00000035122 #18	ENSPCIG00000003136	FNDC3A (ENSPCIG00000003084) #19	ENSPCIG00000003125	MLNR (ENSPCIG00000003060) #20	CDADC1 (ENSPCIG00000002986) #22	CAB39L (ENSPCIG00000002962) #23	SETDB2 (ENSPCIG00000002912) #25	ENSPCIG00000002895 #26	RCBTB1 (ENSPCIG00000002866) #27	ARL11 (ENSPCIG00000002831) #28	EBPL (ENSPCIG00000002805) #29	KPNA3 (ENSPCIG00000002788) #30	SPRYD7 (ENSPCIG00000019440) #31	TRIM13 (ENSPCIG00000019431) #32	KCNRG (ENSPCIG00000019428)
Common wonbat	MODERN SPECIES	342	ENSVURG00010023498 #9	HTR2A (ENSVURG00010023492) #10	ENSVURG00010023489	SUCLA2 (ENSVURG00010023483) #11	NUDT15 (ENSVURG00010023481) #12	MED4 (ENSVURG00010023479) #13	ENSVURG00010023475	ITM2B (ENSVURG00010023473) #14	LPAR6 (ENSVURG00010023472) #16	RB1 (ENSVURG00010023466) #15	RCBTB2 (ENSVURG00010023456) #17	ENSVURG00010023449	ENSVURG00010023445	FNDC3A (ENSVURG00010023437) #19	MLNR (ENSVURG00010023433) #20	CDADC1 (ENSVURG00010023432) #22	CAB39L (ENSVURG00010023430) #23	ENSVURG00010023428 #25	ENSVURG00010023427	ENSVURG00010023425 #26	RCBTB1 (ENSVURG00010023423) #27	ARL11 (ENSVURG00010023422) #28	EBPL (ENSVURG00010023420) #29	KPNA3 (ENSVURG00010023417) #30
Platypus	MODERN SPECIES	12	CPB2 (ENSOANG00000015578)	LCP1 (ENSOANG00000015575)	RUBCNL (ENSOANG00000015572) #7	LRCH1 (ENSOANG00000015567) #8	ESD (ENSOANG00000015566) #9	SUCLA2 (ENSOANG00000015563) #11	NUDT15 (ENSOANG00000051200) #12	ITM2B (ENSOANG00000015558) #14	MED4 (ENSOANG00000045146) #13	LPAR6 (ENSOANG00000043938) #16	RB1 (ENSOANG00000015555) #15	RCBTB2 (ENSOANG00000015554) #17	CYSLTR2 (ENSOANG00000015552) #18	FNDC3A (ENSOANG00000015550) #19	MLNR (ENSOANG00000050133) #20	CDADC1 (ENSOANG00000015548) #22	CAB39L (ENSOANG00000022493) #23	SETDB2 (ENSOANG00000015546) #25	RCBTB1 (ENSOANG00000038043) #27	ENSOANG00000045202 #29	KPNA3 (ENSOANG00000015542) #30	SPRYD7 (ENSOANG00000043027) #31	TRIM13 (ENSOANG00000015539) #32	KCNRG (ENSOANG00000015538)	RNASEH2B (ENSOANG00000015537) #35	ENSOANG00000015535	FAM124A (ENSOANG00000015533) #36	INTS6 (ENSOANG00000015531)	WDFY2 (ENSOANG00000015529)	ENSOANG00000040154	CCDC70 (ENSOANG00000015527)
Sauria	ANCESTRAL SPECIES	2	ENSGT00940000160585 #7	ENSGT00940000159528 #8	ENSGT01040000240539	ENSGT00390000011864 #9	ENSGT01050000244937.a.a #10	ENSGT00390000010170.a.b #11	ENSGT00390000003338 #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #14	ENSGT00950000183202.b #15	ENSGT01040000240444.A.a.a.a.a #16	ENSGT00940000158925 #17	ENSGT01100000263536.B.c.a #18	ENSGT00940000159319 #19	ENSGT01100000263484.C.a.l #20	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #25	ENSGT00950000182865.b.a.b.b.b.a #26	ENSGT00940000155814 #27	ENSGT00940000162731 #28	ENSGT00530000063715.b #29	ENSGT01050000244891.C.c.b #30	ENSGT00390000011048 #31	ENSGT00940000159715 #32	ENSGT00940000161898	ENSGT00390000011737 #34	ENSGT00390000011439 #35	ENSGT00940000162114	ENSGT00590000083134.a.a #36	ENSGT00940000160941 #37
Lepidosauria	ANCESTRAL SPECIES	90														ENSGT00940000159319 #19	ENSGT01100000263484.C.a.l #20	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #25	ENSGT00950000182865.b.a.b.b.b.a #26	ENSGT00940000155814 #27	ENSGT00940000162731 #28	ENSGT00530000063715.b #29	ENSGT01050000244891.C.c.b #30	ENSGT00390000011048 #31	ENSGT00940000159715 #32	ENSGT00940000161898	ENSGT00390000011737 #34	ENSGT00390000011439 #35	ENSGT00940000162114	ENSGT00590000083134.a.a #36	ENSGT00940000160941 #37
tuatara	MODERN SPECIES	1823														ENSSPUG00000007114 #19	MLNR (ENSSPUG00000007103) #20	CDADC1 (ENSSPUG00000007083) #22	CAB39L (ENSSPUG00000006967) #23	ENSSPUG00000006943 #25	ENSSPUG00000006894 #25	PHF11 (ENSSPUG00000006884) #26	RCBTB1 (ENSSPUG00000006868) #27	ARL11 (ENSSPUG00000006852) #28	EBPL (ENSSPUG00000006849) #29	KPNA3 (ENSSPUG00000006839) #30	SPRYD7 (ENSSPUG00000006829) #31	TRIM13 (ENSSPUG00000006825) #32	KCNRG (ENSSPUG00000006820)	DLEU7 (ENSSPUG00000006801) #34	ENSSPUG00000006745 #35	ENSSPUG00000006724	SERPINE3 (ENSSPUG00000006691) #37
Archelosauria	ANCESTRAL SPECIES		ENSGT00940000160585 #7	ENSGT00940000159528 #8	ENSGT01040000240539	ENSGT00390000011864 #9	ENSGT01050000244937.a.a #10	ENSGT00390000010170.a.b #11	ENSGT00390000003338 #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #14	ENSGT00950000183202.b #15	ENSGT01040000240444.A.a.a.a.a #16	ENSGT00940000158925 #17	ENSGT01100000263536.B.c.a #18	ENSGT00940000159319 #19	ENSGT01100000263484.C.a.l #20	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #25	ENSGT00950000182865.b.a.b.b.b.a #26	ENSGT00940000155814 #27	ENSGT00940000162731 #28	ENSGT00530000063715.b #29	ENSGT01050000244891.C.c.b #30	ENSGT00390000011048 #31	ENSGT00940000159715 #32	ENSGT00940000161898	ENSGT00390000011737 #34	ENSGT00390000011439 #35	ENSGT00940000162114	ENSGT00590000083134.a.a #36	ENSGT00940000160941 #37
Cryptodira	ANCESTRAL SPECIES		ENSGT00940000159528 #8	ENSGT01040000240539	ENSGT00390000011864 #9	ENSGT01050000244937.a.a #10	ENSGT00390000010170.a.b #11	ENSGT00390000003338 #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #14	ENSGT00950000183202.b #15	ENSGT01040000240444.A.a.a.a.a #16	ENSGT00940000158925 #17	ENSGT00990000203619.B	ENSGT01100000263536.B.c.a #18	ENSGT00940000159319 #19	ENSGT01100000263484.C.a.l #20	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #25	ENSGT00950000182865.b.a.b.b.b.a #26	ENSGT00940000155814 #27	ENSGT00940000162731 #28	ENSGT00530000063715.b #29	ENSGT01050000244891.C.c.b #30	ENSGT00390000011048 #31	ENSGT00940000159715 #32	ENSGT00940000161898	ENSGT00390000011737 #34	ENSGT00390000011439 #35	ENSGT00940000162114	ENSGT00590000083134.a.a #36	ENSGT00940000160941 #37
Chinese turtle	MODERN SPECIES	955														FNDC3A (ENSPSIG00000002179) #19	MLNR (ENSPSIG00000002189) #20	CDADC1 (ENSPSIG00000002192) #22	CAB39L (ENSPSIG00000002194) #23	SETDB2 (ENSPSIG00000002200) #25	PHF11 (ENSPSIG00000002205) #26	RCBTB1 (ENSPSIG00000002211) #27	ARL11 (ENSPSIG00000001265) #28	EBPL (ENSPSIG00000002215) #29	KPNA3 (ENSPSIG00000002217) #30	ENSPSIG00000001296	SPRYD7 (ENSPSIG00000002221) #31	TRIM13 (ENSPSIG00000001307) #32	KCNRG (ENSPSIG00000002223)	ENSPSIG00000002224 #35
Testudinoidea	ANCESTRAL SPECIES	1	ENSGT00950000183097.a.a.b	ENSGT00940000160585 #7	ENSGT00940000159528.a #8	ENSGT00390000011864 #9	ENSGT01050000244937.a.a.c #10	ENSGT00390000010170.a.b #11	ENSGT00390000003338 #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #14	ENSGT00950000183202.b #15	ENSGT01040000240444.A.a.a.a.a #16	ENSGT00940000158925 #17	ENSGT00990000203619.B	ENSGT00940000159319 #19	ENSGT01100000263484.C.a.l #20	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #25	ENSGT00950000182865.b.a.b.b.b.a #26	ENSGT00940000155814 #27	ENSGT00940000162731 #28	ENSGT00530000063715.b #29	ENSGT01050000244891.C.c.b #30	ENSGT00390000011048 #31	ENSGT00940000159715 #32	ENSGT00940000161898	ENSGT00390000011737 #34	ENSGT00390000011439 #35	ENSGT00940000162114	ENSGT00590000083134.a.a #36	ENSGT00940000160941 #37
Emydidae	ANCESTRAL SPECIES	19					ENSGT01050000244937.a.a.d #10	ENSGT00390000010170.a.b #11	ENSGT00390000003338 #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #14	ENSGT00950000183202.b #15	ENSGT01040000240444.A.a.a.a.a #16	ENSGT00940000158925 #17	ENSGT01100000263536.B.c.a #18	ENSGT00940000159319 #19	ENSGT01100000263484.C.a.l #20	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #25	ENSGT00950000182865.b.a.b.b.b.a #26	ENSGT00940000155814 #27	ENSGT00940000162731 #28	ENSGT00530000063715.b #29	ENSGT01050000244891.C.c.b #30	ENSGT00390000011048 #31	ENSGT00940000159715 #32	ENSGT00940000161898	ENSGT00390000011737 #34	ENSGT00390000011439 #35	ENSGT00940000162114	ENSGT00590000083134.a.a #36	ENSGT00940000160941 #37
painted turtle	DUPLICATION
painted turtle	MODERN SPECIES	764	ENSCPBG00000020310	ENSCPBG00000020311	HINT1 (ENSCPBG00000020313)	LYRM7 (ENSCPBG00000020316)	ENSCPBG00000020319	CDC42SE2 (ENSCPBG00000020323)	SPTLC1 (ENSCPBG00000020329)	ROR2 (ENSCPBG00000020338)	ENSCPBG00000020348	NFIL3 (ENSCPBG00000020350)	AUH (ENSCPBG00000020352)	BICD1 (ENSCPBG00000020360)	FGD4 (ENSCPBG00000020371)	DNM1L (ENSCPBG00000020381)	YARS2 (ENSCPBG00000020392)	ENSCPBG00000020395 #22
painted turtle	MODERN SPECIES		LCP1 (ENSCPBG00000008230)	RUBCNL (ENSCPBG00000008254) #7	LRCH1 (ENSCPBG00000008287) #8	ENSCPBG00000008337 #9	ENSCPBG00000008349 #10	SUCLA2 (ENSCPBG00000008358) #11	NUDT15 (ENSCPBG00000008367) #12	MED4 (ENSCPBG00000008373) #13	ITM2B (ENSCPBG00000008384) #14	RB1 (ENSCPBG00000008402) #15	LPAR6 (ENSCPBG00000008431) #16	RCBTB2 (ENSCPBG00000008438) #17	CYSLTR2 (ENSCPBG00000008453) #18	FNDC3A (ENSCPBG00000008461) #19	MLNR (ENSCPBG00000008496) #20	CDADC1 (ENSCPBG00000008499) #22	CAB39L (ENSCPBG00000008505) #23	SETDB2 (ENSCPBG00000008524) #25	PHF11 (ENSCPBG00000008536) #26	RCBTB1 (ENSCPBG00000008550) #27	ARL11 (ENSCPBG00000008579) #28	EBPL (ENSCPBG00000008583) #29	KPNA3 (ENSCPBG00000008596) #30	SPRYD7 (ENSCPBG00000008613) #31	TRIM13 (ENSCPBG00000008621) #32	KCNRG (ENSCPBG00000008627)	ENSCPBG00000008640	DLEU7 (ENSCPBG00000008663) #34	RNASEH2B (ENSCPBG00000008684) #35	ENSCPBG00000008715	FAM124A (ENSCPBG00000008848) #36
Three-toed box turtle	DUPLICATION
Three-toed box turtle	MODERN SPECIES	118	ENSTMTG00000004415	TMTC1 (ENSTMTG00000004248)	IPO8 (ENSTMTG00000004177)	ENSTMTG00000004154	ENSTMTG00000004128	SINHCAF (ENSTMTG00000004092)	DENND5B (ENSTMTG00000004004)	ENSTMTG00000003983	ENSTMTG00000003968	ENSTMTG00000003956	BICD1 (ENSTMTG00000003918)	ENSTMTG00000003899	FGD4 (ENSTMTG00000003532)	DNM1L (ENSTMTG00000003416)	YARS2 (ENSTMTG00000003380)	ENSTMTG00000003339 #22	PKP2 (ENSTMTG00000003317)	SYT10 (ENSTMTG00000003286)	SLC13A4 (ENSTMTG00000003255)	FAM180A (ENSTMTG00000021768)	MTPN (ENSTMTG00000021764)	CHRM2 (ENSTMTG00000021762)	PTN (ENSTMTG00000021755)	DGKI (ENSTMTG00000021578)	CREB3L2 (ENSTMTG00000021553)	SSBP1 (ENSTMTG00000021544)	WEE2 (ENSTMTG00000021535)	DENND11 (ENSTMTG00000021527)	AGK (ENSTMTG00000021483)	TMEM178B (ENSTMTG00000021466)	MRPS33 (ENSTMTG00000021462)
Three-toed box turtle	MODERN SPECIES								ENSTMTG00000000016	NUDT15 (ENSTMTG00000000015) #12	ITM2B (ENSTMTG00000000014) #14	LPAR6 (ENSTMTG00000000012) #16	RB1 (ENSTMTG00000000011) #15	RCBTB2 (ENSTMTG00000000010) #17	ENSTMTG00000000009	FNDC3A (ENSTMTG00000000008) #19	MLNR (ENSTMTG00000000007) #20	CDADC1 (ENSTMTG00000000006) #22	CAB39L (ENSTMTG00000000005) #23	ENSTMTG00000000004 #25	PHF11 (ENSTMTG00000000003) #26	ENSTMTG00000000002 #27
Testudinidae	ANCESTRAL SPECIES		ENSGT00950000183097.a.a.b	ENSGT00940000160585 #7	ENSGT00940000159528.a #8	ENSGT00390000011864 #9	ENSGT01050000244937.a.a.c #10	ENSGT00390000010170.a.b #11	ENSGT00390000003338 #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #14	ENSGT00950000183202.b #15	ENSGT01040000240444.A.a.a.a.a #16	ENSGT00940000158925 #17	ENSGT00990000203619.B	ENSGT00940000159319 #19	ENSGT01100000263484.C.a.l #20	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #25	ENSGT00950000182865.b.a.b.b.b.a #26	ENSGT00940000155814 #27	ENSGT00940000162731 #28	ENSGT00530000063715.b #29	ENSGT01050000244891.C.c.b #30	ENSGT00390000011048 #31	ENSGT00940000159715 #32	ENSGT00940000161898	ENSGT00390000011737 #34	ENSGT00390000011439 #35	ENSGT00940000162114	ENSGT00590000083134.a.a #36	ENSGT00940000160941 #37
Abingdon island giant tortoise	MODERN SPECIES	2507																CDADC1 (ENSCABG00000001490) #22
Goode s thornscrub tortoise	MODERN SPECIES		RUBCNL (ENSGEVG00005006850) #7	LRCH1 (ENSGEVG00005006747) #8	ESD (ENSGEVG00005006649) #9	HTR2A (ENSGEVG00005006629) #10	ENSGEVG00005006611	SUCLA2 (ENSGEVG00005006596) #11	NUDT15 (ENSGEVG00005006585) #12	MED4 (ENSGEVG00005006571) #13	ITM2B (ENSGEVG00005006545) #14	LPAR6 (ENSGEVG00005006519) #16	RB1 (ENSGEVG00005006482) #15	RCBTB2 (ENSGEVG00005006426) #17	ENSGEVG00005006386	FNDC3A (ENSGEVG00005006289) #19	MLNR (ENSGEVG00005006112) #20	CDADC1 (ENSGEVG00005006081) #22	CAB39L (ENSGEVG00005006065) #23	SETDB2 (ENSGEVG00005005991) #25	PHF11 (ENSGEVG00005005934) #26	RCBTB1 (ENSGEVG00005005905) #27	ARL11 (ENSGEVG00005005885) #28	EBPL (ENSGEVG00005005869) #29	KPNA3 (ENSGEVG00005005843) #30	SPRYD7 (ENSGEVG00005005821) #31	TRIM13 (ENSGEVG00005005808) #32	KCNRG (ENSGEVG00005005794)	DLEU7 (ENSGEVG00005005763) #34	RNASEH2B (ENSGEVG00005005742) #35	ENSGEVG00005005488	FAM124A (ENSGEVG00005005404) #36	SERPINE3 (ENSGEVG00005005365) #37
Archosauria	ANCESTRAL SPECIES	2	ENSGT00940000173214	ENSGT00940000160585 #7	ENSGT00940000159528 #8	ENSGT00390000011864 #9	ENSGT01050000244937.a.a #10	ENSGT00390000010170.a.b #11	ENSGT00390000003338 #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #14	ENSGT00950000183202.b #15	ENSGT01040000240444.A.a.a.a.a #16	ENSGT00940000158925 #17	ENSGT01100000263536.B.c.a #18	ENSGT00940000159319 #19	ENSGT01100000263484.C.a.l #20	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #25	ENSGT00950000182865.b.a.b.b.b.a #26	ENSGT00940000155814 #27	ENSGT00940000162731 #28	ENSGT01050000244891.C.c.b #30	ENSGT00390000011048 #31	ENSGT00940000159715 #32	ENSGT00940000161898	ENSGT00390000011737 #34	ENSGT00390000011439 #35	ENSGT00940000162114	ENSGT00590000083134.a.a #36	ENSGT00940000160941 #37	ENSGT00390000016655.a.a.b
Aves	ANCESTRAL SPECIES		ENSGT00940000173214	ENSGT00940000160585 #7	ENSGT00940000159528 #8	ENSGT00390000011864 #9	ENSGT01050000244937.a.a #10	ENSGT00390000010170.a.b #11	ENSGT00390000003338 #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #14	ENSGT00950000183202.b #15	ENSGT01040000240444.A.a.a.a.a #16	ENSGT00940000158925 #17	ENSGT01100000263536.B.c.a #18	ENSGT00940000159319 #19	ENSGT01100000263484.C.a.l #20	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #25	ENSGT00950000182865.b.a.b.b.b.a #26	ENSGT00940000155814 #27	ENSGT00940000162731 #28	ENSGT01050000244891.C.c.b #30	ENSGT00390000011048 #31	ENSGT00940000159715 #32	ENSGT00940000161898	ENSGT00390000011737 #34	ENSGT00390000011439 #35	ENSGT00940000162114	ENSGT00590000083134.a.a #36	ENSGT00940000160941 #37	ENSGT00390000016655.a.a.b
Neognathae	ANCESTRAL SPECIES	1	ENSGT00940000160585 #7	ENSGT00940000159528 #8	ENSGT00390000011864 #9	ENSGT01050000244937.a.a #10	ENSGT00990000211105	ENSGT00390000010170.a.b #11	ENSGT00390000003338 #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #14	ENSGT00950000183202.b #15	ENSGT01040000240444.A.a.a.a.a #16	ENSGT00940000158925 #17	ENSGT01100000263536.B.c.a #18	ENSGT00940000159319 #19	ENSGT01100000263484.C.a.l #20	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #25	ENSGT00950000182865.b.a.b.b.b.a #26	ENSGT00940000155814 #27	ENSGT00940000162731 #28	ENSGT01050000244891.C.c.b #30	ENSGT00390000011048 #31	ENSGT00940000159715 #32	ENSGT00940000161898	ENSGT00390000011737 #34	ENSGT00390000011439 #35	ENSGT00590000083134.a.a #36	ENSGT00940000160941 #37	ENSGT00390000016655.a.a.b	ENSGT00940000158527
Neognathae_b	ANCESTRAL SPECIES		ENSGT00940000160585 #7	ENSGT00940000159528.d #8	ENSGT00390000011864 #9	ENSGT01050000244937.a.a #10	ENSGT00990000211105	ENSGT00390000010170.a.b #11	ENSGT00390000003338 #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #14	ENSGT00950000183202.b #15	ENSGT01040000240444.A.a.a.a.a #16	ENSGT00940000158925 #17	ENSGT01100000263536.B.c.a #18	ENSGT00940000159319 #19	ENSGT01100000263484.C.a.l #20	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #25	ENSGT00950000182865.b.a.b.b.b.a #26	ENSGT00940000155814 #27	ENSGT00940000162731 #28	ENSGT01050000244891.C.c.b #30	ENSGT00390000011048 #31	ENSGT00940000159715 #32	ENSGT00940000161898	ENSGT00390000011439 #35	ENSGT00590000083134.a.a #36	ENSGT00940000160941 #37	ENSGT00390000016655.a.a.b	ENSGT00940000158527	ENSGT00940000163978
Neognathae_c	ANCESTRAL SPECIES	11	ENSGT00950000183097.a.a.b	ENSGT00940000160585 #7	ENSGT00940000159528.d #8	ENSGT00390000011864 #9	ENSGT01050000244937.a.a #10	ENSGT00990000211105	ENSGT00390000010170.a.b #11	ENSGT00390000003338 #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #14	ENSGT00950000183202.b #15	ENSGT01040000240444.A.a.a.a.a #16	ENSGT00940000158925 #17	ENSGT01100000263536.B.c.a #18	ENSGT00940000159319 #19	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #25	ENSGT00950000182865.b.a.b.b.b.a #26	ENSGT00940000155814 #27	ENSGT00940000162731 #28	ENSGT01050000244891.C.c.b #30	ENSGT00390000011048 #31	ENSGT00940000159715 #32	ENSGT00940000161898	ENSGT00390000011439 #35	ENSGT00590000083134.a.a #36	ENSGT00940000160941 #37	ENSGT00390000016655.a.a.b	ENSGT00940000158527	ENSGT00940000163978
Golden eagle	MODERN SPECIES	5	LCP1 (ENSACCG00020011643)	RUBCNL (ENSACCG00020011678) #7	LRCH1 (ENSACCG00020011771) #8	ESD (ENSACCG00020011833) #9	HTR2A (ENSACCG00020011855) #10	ENSACCG00020011887	SUCLA2 (ENSACCG00020011934) #11	NUDT15 (ENSACCG00020011958) #12	MED4 (ENSACCG00020011985) #13	ITM2B (ENSACCG00020012021) #14	RB1 (ENSACCG00020012131) #15	LPAR6 (ENSACCG00020012201) #16	RCBTB2 (ENSACCG00020012227) #17	CYSLTR2 (ENSACCG00020012257) #18	FNDC3A (ENSACCG00020012324) #19	CDADC1 (ENSACCG00020012412) #22	CAB39L (ENSACCG00020012436) #23	SETDB2 (ENSACCG00020012483) #25	PHF11 (ENSACCG00020012535) #26	RCBTB1 (ENSACCG00020012556) #27	ARL11 (ENSACCG00020012574) #28	KPNA3 (ENSACCG00020012597) #30	SPRYD7 (ENSACCG00020012640) #31	TRIM13 (ENSACCG00020012649) #32	KCNRG (ENSACCG00020012660)	RNASEH2B (ENSACCG00020012697) #35	FAM124A (ENSACCG00020012738) #36	SERPINE3 (ENSACCG00020012759) #37	INTS6 (ENSACCG00020012799)	WDFY2 (ENSACCG00020012838)	ENSACCG00020012862
Kakapo	MODERN SPECIES	11	CPB2 (ENSSHBG00005008274)	LCP1 (ENSSHBG00005008297)	RUBCNL (ENSSHBG00005008318) #7	LRCH1 (ENSSHBG00005008351) #8	ESD (ENSSHBG00005008373) #9	HTR2A (ENSSHBG00005008380) #10	SUCLA2 (ENSSHBG00005008387) #11	NUDT15 (ENSSHBG00005008396) #12	MED4 (ENSSHBG00005008402) #13	ITM2B (ENSSHBG00005008421) #14	RB1 (ENSSHBG00005008428) #15	LPAR6 (ENSSHBG00005008437) #16	RCBTB2 (ENSSHBG00005000029) #17	CYSLTR2 (ENSSHBG00005000035) #18	FNDC3A (ENSSHBG00005000045) #19	CDADC1 (ENSSHBG00005001474) #22	CAB39L (ENSSHBG00005001515) #23	SETDB2 (ENSSHBG00005001539) #25	PHF11 (ENSSHBG00005001586) #26	RCBTB1 (ENSSHBG00005001601) #27	ARL11 (ENSSHBG00005001633) #28	KPNA3 (ENSSHBG00005001660) #30	SPRYD7 (ENSSHBG00005001708) #31	TRIM13 (ENSSHBG00005001751) #32	KCNRG (ENSSHBG00005001767)	ENSSHBG00005001793	RNASEH2B (ENSSHBG00005001816) #35	FAM124A (ENSSHBG00005001834) #36	SERPINE3 (ENSSHBG00005001858) #37	INTS6 (ENSSHBG00005001911)	WDFY2 (ENSSHBG00005001959)
Passeriformes	ANCESTRAL SPECIES	1	ENSGT00950000183097.a.a.b	ENSGT00940000160585 #7	ENSGT00940000159528.d #8	ENSGT00390000011864 #9	ENSGT01050000244937.a.a #10	ENSGT00390000010170.a.b #11	ENSGT00390000003338 #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #14	ENSGT00950000183202.b #15	ENSGT01040000240444.A.a.a.a.a #16	ENSGT00940000158925 #17	ENSGT01100000263536.B.c.a #18	ENSGT00940000159319 #19	ENSGT01100000263484.C.a.l #20	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #25	ENSGT00950000182865.b.a.b.b.b.a #26	ENSGT00940000155814 #27	ENSGT00940000162731 #28	ENSGT01050000244891.C.c.b #30	ENSGT00390000011048 #31	ENSGT00940000159715 #32	ENSGT00940000161898	ENSGT00390000011439 #35	ENSGT00590000083134.a.a #36	ENSGT00940000160941 #37	ENSGT00390000016655.a.a.b	ENSGT00940000158527	ENSGT00940000163978
Passeriformes_d	ANCESTRAL SPECIES	1	ENSGT00950000183097.a.a.b	ENSGT00940000160585 #7	ENSGT00940000159528.d #8	ENSGT00390000011864 #9	ENSGT01050000244937.a.a #10	ENSGT00390000010170.a.b #11	ENSGT00390000003338 #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #14	ENSGT00950000183202.b #15	ENSGT01040000240444.A.a.a.a.a #16	ENSGT00940000158925 #17	ENSGT01100000263536.B.c.a #18	ENSGT00940000159319 #19	ENSGT01100000263484.C.a.l #20	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #25	ENSGT00950000182865.b.a.b.b.b.a #26	ENSGT00940000155814 #27	ENSGT00940000162731 #28	ENSGT01050000244891.C.c.b #30	ENSGT00390000011048 #31	ENSGT00940000159715 #32	ENSGT00940000161898	ENSGT00390000011439 #35	ENSGT00590000083134.a.a #36	ENSGT00940000160941 #37	ENSGT00390000016655.a.a.b	ENSGT00940000158527	ENSGT00940000163978
Passeriformes_g	ANCESTRAL SPECIES	2	ENSGT00950000183097.a.a.b	ENSGT00940000160585 #7	ENSGT00940000159528.d #8	ENSGT00390000011864 #9	ENSGT01050000244937.a.a #10	ENSGT00390000010170.a.b #11	ENSGT00390000003338 #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #14	ENSGT00950000183202.b #15	ENSGT01040000240444.A.a.a.a.a #16	ENSGT00940000158925 #17	ENSGT01100000263536.B.c.a #18	ENSGT00940000159319 #19	ENSGT01100000263484.C.a.l #20	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #25	ENSGT00950000182865.b.a.b.b.b.a #26	ENSGT00940000155814 #27	ENSGT00940000162731 #28	ENSGT01050000244891.C.c.b #30	ENSGT00390000011048 #31	ENSGT00940000159715 #32	ENSGT00940000161898	ENSGT00390000011439 #35	ENSGT00590000083134.a.a #36	ENSGT00940000160941 #37	ENSGT00390000016655.a.a.b	ENSGT00940000158527	ENSGT00940000163978
Passeroidea	ANCESTRAL SPECIES	5	ENSGT00950000183097.a.a.b	ENSGT00940000160585 #7	ENSGT00940000159528.d #8	ENSGT00390000011864 #9	ENSGT01050000244937.a.a #10	ENSGT00390000010170.a.b #11	ENSGT00390000003338 #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #14	ENSGT00950000183202.b #15	ENSGT01040000240444.A.a.a.a.a #16	ENSGT00940000158925 #17	ENSGT01100000263536.B.c.a #18	ENSGT00940000159319 #19	ENSGT01100000263484.C.a.l #20	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #25	ENSGT00950000182865.b.a.b.b.b.a #26	ENSGT00940000155814 #27	ENSGT00940000162731 #28	ENSGT01050000244891.C.c.b #30	ENSGT00390000011048 #31	ENSGT00940000159715 #32	ENSGT00940000161898	ENSGT00390000011439 #35	ENSGT00590000083134.a.a #36	ENSGT00940000160941 #37	ENSGT00390000016655.a.a.b	ENSGT00940000158527	ENSGT00940000163978
Common canary	MODERN SPECIES	4	RUBCNL (ENSSCAG00000013235) #7	LRCH1 (ENSSCAG00000013210) #8	ESD (ENSSCAG00000013199) #9	HTR2A (ENSSCAG00000013193) #10	SUCLA2 (ENSSCAG00000013172) #11	NUDT15 (ENSSCAG00000013166) #12	MED4 (ENSSCAG00000013164) #13	ITM2B (ENSSCAG00000013161) #14	ENSSCAG00000013159	LPAR6 (ENSSCAG00000013157) #16	RB1 (ENSSCAG00000013148) #15	RCBTB2 (ENSSCAG00000013140) #17	CYSLTR2 (ENSSCAG00000013136) #18	FNDC3A (ENSSCAG00000013116) #19	MLNR (ENSSCAG00000013112) #20	CDADC1 (ENSSCAG00000013110) #22	CAB39L (ENSSCAG00000013101) #23	SETDB2 (ENSSCAG00000013094) #25	PHF11 (ENSSCAG00000013090) #26	ARL11 (ENSSCAG00000013085) #28	RCBTB1 (ENSSCAG00000013081) #27	KPNA3 (ENSSCAG00000013069) #30	SPRYD7 (ENSSCAG00000013043) #31	TRIM13 (ENSSCAG00000013034) #32	KCNRG (ENSSCAG00000013032)	RNASEH2B (ENSSCAG00000012998) #35	FAM124A (ENSSCAG00000012992) #36	SERPINE3 (ENSSCAG00000012981) #37	INTS6 (ENSSCAG00000012974)	WDFY2 (ENSSCAG00000012968)	ENSSCAG00000012959
Zebra finch	MODERN SPECIES		LCP1 (ENSTGUG00000012284)	RUBCNL (ENSTGUG00000012281) #7	LRCH1 (ENSTGUG00000012267) #8	ESD (ENSTGUG00000012256) #9	HTR2A (ENSTGUG00000012255) #10	SUCLA2 (ENSTGUG00000012239) #11	NUDT15 (ENSTGUG00000012236) #12	MED4 (ENSTGUG00000022889) #13	ITM2B (ENSTGUG00000012223) #14	RB1 (ENSTGUG00000012205) #15	LPAR6 (ENSTGUG00000012222) #16	RCBTB2 (ENSTGUG00000012201) #17	CYSLTR2 (ENSTGUG00000024279) #18	FNDC3A (ENSTGUG00000012174) #19	MLNR (ENSTGUG00000012172) #20	CDADC1 (ENSTGUG00000012166) #22	CAB39L (ENSTGUG00000012160) #23	SETDB2 (ENSTGUG00000012159) #25	PHF11 (ENSTGUG00000012156) #26	RCBTB1 (ENSTGUG00000012146) #27	ARL11 (ENSTGUG00000020855) #28	KPNA3 (ENSTGUG00000012126) #30	SPRYD7 (ENSTGUG00000019704) #31	TRIM13 (ENSTGUG00000012115) #32	RNASEH2B (ENSTGUG00000012104) #35	FAM124A (ENSTGUG00000023086) #36	SERPINE3 (ENSTGUG00000012096) #37	INTS6 (ENSTGUG00000012084)	WDFY2 (ENSTGUG00000012075)	ENSTGUG00000025030	ENSTGUG00000019306
Medium ground finch	MODERN SPECIES	25	LCP1 (ENSGFOG00000011957)	RUBCNL (ENSGFOG00000011968) #7	LRCH1 (ENSGFOG00000011980) #8	ESD (ENSGFOG00000012013) #9	HTR2A (ENSGFOG00000012020) #10	SUCLA2 (ENSGFOG00000012031) #11	NUDT15 (ENSGFOG00000012066) #12	MED4 (ENSGFOG00000012071) #13	ITM2B (ENSGFOG00000012074) #14	RB1 (ENSGFOG00000012079) #15	LPAR6 (ENSGFOG00000012090) #16	RCBTB2 (ENSGFOG00000012093) #17	CYSLTR2 (ENSGFOG00000012100) #18	FNDC3A (ENSGFOG00000012105) #19	MLNR (ENSGFOG00000012122) #20	CDADC1 (ENSGFOG00000012132) #22	CAB39L (ENSGFOG00000012135) #23	SETDB2 (ENSGFOG00000012144) #25	PHF11 (ENSGFOG00000012155) #26	RCBTB1 (ENSGFOG00000012164) #27	ARL11 (ENSGFOG00000012172) #28	KPNA3 (ENSGFOG00000012187) #30	SPRYD7 (ENSGFOG00000012225) #31	TRIM13 (ENSGFOG00000005836) #32	KCNRG (ENSGFOG00000005952)	RNASEH2B (ENSGFOG00000005963) #35	FAM124A (ENSGFOG00000005986) #36	SERPINE3 (ENSGFOG00000005999) #37	INTS6 (ENSGFOG00000006012)	WDFY2 (ENSGFOG00000006027)	ENSGFOG00000006034
Flycatcher	MODERN SPECIES		LCP1 (ENSFALG00000008208)	RUBCNL (ENSFALG00000008218) #7	LRCH1 (ENSFALG00000008234) #8	ESD (ENSFALG00000025468) #9	HTR2A (ENSFALG00000008251) #10	SUCLA2 (ENSFALG00000008254) #11	NUDT15 (ENSFALG00000008258) #12	MED4 (ENSFALG00000008261) #13	ITM2B (ENSFALG00000028667) #14	RB1 (ENSFALG00000008306) #15	LPAR6 (ENSFALG00000029001) #16	RCBTB2 (ENSFALG00000008347) #17	CYSLTR2 (ENSFALG00000014456) #18	FNDC3A (ENSFALG00000008353) #19	MLNR (ENSFALG00000008366) #20	CDADC1 (ENSFALG00000008368) #22	CAB39L (ENSFALG00000008370) #23	SETDB2 (ENSFALG00000008379) #25	PHF11 (ENSFALG00000008388) #26	RCBTB1 (ENSFALG00000008397) #27	ARL11 (ENSFALG00000014468) #28	KPNA3 (ENSFALG00000008405) #30	SPRYD7 (ENSFALG00000008415) #31	KCNRG (ENSFALG00000027268)	RNASEH2B (ENSFALG00000008435) #35	FAM124A (ENSFALG00000008449) #36	SERPINE3 (ENSFALG00000008456) #37	INTS6 (ENSFALG00000008463)	WDFY2 (ENSFALG00000008473)	ENSFALG00000008490	ATP7B (ENSFALG00000008513)
Great tit	MODERN SPECIES		LCP1 (ENSPMJG00000014910)	RUBCNL (ENSPMJG00000014911) #7	LRCH1 (ENSPMJG00000014912) #8	ESD (ENSPMJG00000014913) #9	HTR2A (ENSPMJG00000014914) #10	SUCLA2 (ENSPMJG00000014916) #11	NUDT15 (ENSPMJG00000014917) #12	MED4 (ENSPMJG00000014918) #13	ITM2B (ENSPMJG00000014920) #14	RB1 (ENSPMJG00000014921) #15	LPAR6 (ENSPMJG00000014922) #16	RCBTB2 (ENSPMJG00000014923) #17	CYSLTR2 (ENSPMJG00000014925) #18	FNDC3A (ENSPMJG00000014926) #19	MLNR (ENSPMJG00000014927) #20	CDADC1 (ENSPMJG00000014928) #22	CAB39L (ENSPMJG00000014929) #23	SETDB2 (ENSPMJG00000014930) #25	PHF11 (ENSPMJG00000014931) #26	RCBTB1 (ENSPMJG00000014932) #27	ARL11 (ENSPMJG00000014934) #28	KPNA3 (ENSPMJG00000014935) #30	SPRYD7 (ENSPMJG00000014936) #31	TRIM13 (ENSPMJG00000014937) #32	KCNRG (ENSPMJG00000014938)	RNASEH2B (ENSPMJG00000014950) #35	FAM124A (ENSPMJG00000014951) #36	SERPINE3 (ENSPMJG00000014953) #37	INTS6 (ENSPMJG00000014954)	ENSPMJG00000014957	WDFY2 (ENSPMJG00000014958)
Galloanserae	ANCESTRAL SPECIES	1	ENSGT00940000160585 #7	ENSGT00940000159528 #8	ENSGT00390000011864 #9	ENSGT01050000244937.a.a #10	ENSGT00990000211105	ENSGT00390000010170.a.b #11	ENSGT00390000003338 #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #14	ENSGT00950000183202.b #15	ENSGT01040000240444.A.a.a.a.a #16	ENSGT00940000158925 #17	ENSGT01100000263536.B.c.a #18	ENSGT00940000159319 #19	ENSGT01100000263484.C.a.l #20	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #25	ENSGT00950000182865.b.a.b.b.b.a #26	ENSGT00940000155814 #27	ENSGT00940000162731 #28	ENSGT01050000244891.C.c.b #30	ENSGT00390000011048 #31	ENSGT00940000159715 #32	ENSGT00940000161898	ENSGT00390000011737 #34	ENSGT00390000011439 #35	ENSGT00590000083134.a.a #36	ENSGT00940000160941 #37	ENSGT00390000016655.a.a.b	ENSGT00940000158527
Anatidae	ANCESTRAL SPECIES	16	ENSGT00940000160585 #7	ENSGT00940000159528 #8	ENSGT00390000011864 #9	ENSGT01050000244937.a.a #10	ENSGT00990000211105	ENSGT00390000010170.a.b #11	ENSGT00390000003338 #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #14	ENSGT01040000240444.A.a.a.a.a #16	ENSGT00950000183202.b #15	ENSGT00940000158925 #17	ENSGT01100000263536.B.c.a #18	ENSGT00940000159319 #19	ENSGT01100000263484.C.a.l #20	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #25	ENSGT00950000182865.b.a.b.b.b.a #26	ENSGT00940000155814 #27	ENSGT00940000162731 #28	ENSGT01050000244891.C.c.b #30	ENSGT00390000011048 #31	ENSGT00940000159715 #32	ENSGT00940000161898	ENSGT00390000011737 #34	ENSGT00390000011439 #35	ENSGT00590000083134.a.a #36	ENSGT00940000160941 #37	ENSGT00390000016655.a.a.b	ENSGT00940000158527
Pink-footed goose	MODERN SPECIES	88	LCP1 (ENSABRG00000006152)	RUBCNL (ENSABRG00000006110) #7	LRCH1 (ENSABRG00000006051) #8	ESD (ENSABRG00000006025) #9	HTR2A (ENSABRG00000006015) #10	SUCLA2 (ENSABRG00000005994) #11	NUDT15 (ENSABRG00000005976) #12	MED4 (ENSABRG00000005968) #13	ITM2B (ENSABRG00000005957) #14	LPAR6 (ENSABRG00000005948) #16	RB1 (ENSABRG00000005918) #15	RCBTB2 (ENSABRG00000005909) #17	CYSLTR2 (ENSABRG00000005903) #18	FNDC3A (ENSABRG00000005875) #19	MLNR (ENSABRG00000005864) #20	CDADC1 (ENSABRG00000005856) #22	CAB39L (ENSABRG00000005841) #23	SETDB2 (ENSABRG00000005808) #25	PHF11 (ENSABRG00000005790) #26	RCBTB1 (ENSABRG00000005768) #27	ARL11 (ENSABRG00000005745) #28	KPNA3 (ENSABRG00000005728) #30	SPRYD7 (ENSABRG00000005725) #31	TRIM13 (ENSABRG00000005719) #32	KCNRG (ENSABRG00000005718)	DLEU7 (ENSABRG00000005671) #34	RNASEH2B (ENSABRG00000005646) #35	FAM124A (ENSABRG00000005638) #36	SERPINE3 (ENSABRG00000005632) #37	INTS6 (ENSABRG00000005622)	WDFY2 (ENSABRG00000005602)
Duck	MODERN SPECIES		LRCH1 (ENSAPLG00000014780) #8	ESD (ENSAPLG00000014654) #9	HTR2A (ENSAPLG00000011672) #10	ENSAPLG00000023867	SUCLA2 (ENSAPLG00000008417) #11	NUDT15 (ENSAPLG00000021981) #12	MED4 (ENSAPLG00000008395) #13	ITM2B (ENSAPLG00000008210) #14	LPAR6 (ENSAPLG00000000875) #16	RB1 (ENSAPLG00000007734) #15	RCBTB2 (ENSAPLG00000007415) #17	CYSLTR2 (ENSAPLG00000001160) #18	ENSAPLG00000029898	FNDC3A (ENSAPLG00000009605) #19	MLNR (ENSAPLG00000024039) #20	CDADC1 (ENSAPLG00000009321) #22	CAB39L (ENSAPLG00000009191) #23	SETDB2 (ENSAPLG00000009061) #25	PHF11 (ENSAPLG00000008888) #26	RCBTB1 (ENSAPLG00000008303) #27	ARL11 (ENSAPLG00000008269) #28	KPNA3 (ENSAPLG00000007820) #30	SPRYD7 (ENSAPLG00000007617) #31	TRIM13 (ENSAPLG00000001137) #32	KCNRG (ENSAPLG00000025822)	DLEU7 (ENSAPLG00000008954) #34	RNASEH2B (ENSAPLG00000008955) #35	SERPINE3 (ENSAPLG00000006531) #37	INTS6 (ENSAPLG00000007010)	WDFY2 (ENSAPLG00000007335)	ENSAPLG00000007313
Phasianidae	ANCESTRAL SPECIES		ENSGT00940000173214	ENSGT00940000160585 #7	ENSGT00940000159528 #8	ENSGT00390000011864 #9	ENSGT01050000244937.a.a #10	ENSGT00390000010170.a.b #11	ENSGT00390000003338 #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #14	ENSGT00950000183202.b #15	ENSGT01040000240444.A.a.a.a.a #16	ENSGT00940000158925 #17	ENSGT01100000263536.B.c.a #18	ENSGT00940000159319 #19	ENSGT01100000263484.C.a.l #20	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #25	ENSGT00950000182865.b.a.b.b.b.a #26	ENSGT00940000155814 #27	ENSGT00940000162731 #28	ENSGT01050000244891.C.c.b #30	ENSGT00390000011048 #31	ENSGT00940000159715 #32	ENSGT00940000161898	ENSGT00390000011737 #34	ENSGT00390000011439 #35	ENSGT00590000083134.a.a #36	ENSGT00940000160941 #37	ENSGT00390000016655.a.a.b	ENSGT00940000158527
Phasianidae_b	ANCESTRAL SPECIES		ENSGT00940000173288	ENSGT00940000160585 #7	ENSGT00940000159528 #8	ENSGT00390000011864 #9	ENSGT01050000244937.a.a #10	ENSGT00390000010170.a.b #11	ENSGT00390000003338 #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #14	ENSGT00950000183202.b #15	ENSGT01040000240444.A.a.a.a.a #16	ENSGT00940000158925 #17	ENSGT01100000263536.B.c.a #18	ENSGT00940000159319 #19	ENSGT01100000263484.C.a.l #20	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #25	ENSGT00950000182865.b.a.b.b.b.a #26	ENSGT00940000155814 #27	ENSGT00940000162731 #28	ENSGT01050000244891.C.c.b #30	ENSGT00390000011048 #31	ENSGT00940000159715 #32	ENSGT00940000161898	ENSGT00390000011737 #34	ENSGT00390000011439 #35	ENSGT00590000083134.a.a #36	ENSGT00940000160941 #37	ENSGT00390000016655.a.a.b	ENSGT00940000158527
Turkey	MODERN SPECIES		SERPINE3 (ENSMGAG00000015030) #37	FAM124A (ENSMGAG00000015026) #36	RNASEH2B (ENSMGAG00000015025) #35	DLEU7 (ENSMGAG00000004757) #34	ENSMGAG00000015580 #32	ENSMGAG00000015022	SPRYD7 (ENSMGAG00000017519) #31	ENSMGAG00000015020 #30	SETDB2 (ENSMGAG00000015017) #25	ENSMGAG00000015018 #26	RCBTB1 (ENSMGAG00000015019) #27	ARL11 (ENSMGAG00000017962) #28	ENSMGAG00000017975	ENSMGAG00000018802 #23	ENSMGAG00000015016 #23	ENSMGAG00000015014 #22	ENSMGAG00000015012 #20	ENSMGAG00000015011 #19	ENSMGAG00000015569 #18	ENSMGAG00000020468 #15	RCBTB2 (ENSMGAG00000015010) #17	ENSMGAG00000015008 #15	ENSMGAG00000015009 #16	ENSMGAG00000021179	ITM2B (ENSMGAG00000015007) #14	ENSMGAG00000021154 #12	ENSMGAG00000015006 #13	SUCLA2 (ENSMGAG00000015004) #11	ENSMGAG00000018600 #10	ENSMGAG00000019843	ENSMGAG00000015002 #9
Chicken	MODERN SPECIES		ENSGALG00010003809	RUBCNL (ENSGALG00010003821) #7	LRCH1 (ENSGALG00010003843) #8	ESD (ENSGALG00010003848) #9	HTR2A (ENSGALG00010004769) #10	SUCLA2 (ENSGALG00010003858) #11	NUDT15 (ENSGALG00010003861) #12	MED4 (ENSGALG00010003870) #13	ITM2B (ENSGALG00010003889) #14	RB1 (ENSGALG00010003900) #15	LPAR6 (ENSGALG00010003920) #16	RCBTB2 (ENSGALG00010003929) #17	CYSLTR2 (ENSGALG00010003958) #18	FNDC3A (ENSGALG00010003986) #19	MLNR (ENSGALG00010003995) #20	CDADC1 (ENSGALG00010004002) #22	CAB39L (ENSGALG00010004043) #23	SETDB2 (ENSGALG00010004049) #25	PHF11 (ENSGALG00010004083) #26	ENSGALG00010004781 #27	ENSGALG00010004097 #27	ARL11 (ENSGALG00010004070) #28	KPNA3 (ENSGALG00010004141) #30	SPRYD7 (ENSGALG00010004147) #31	TRIM13 (ENSGALG00010002812) #32	DLEU7 (ENSGALG00010002820) #34	RNASEH2B (ENSGALG00010002864) #35	FAM124A (ENSGALG00010002888) #36	SERPINE3 (ENSGALG00010002897) #37	INTS6 (ENSGALG00010002925)	WDFY2 (ENSGALG00010002953)
Japanese quail	MODERN SPECIES		RUBCNL (ENSCJPG00005019761) #7	LRCH1 (ENSCJPG00005019762) #8	ESD (ENSCJPG00005019763) #9	HTR2A (ENSCJPG00005019764) #10	SUCLA2 (ENSCJPG00005019770) #11	NUDT15 (ENSCJPG00005019771) #12	ENSCJPG00005019772	MED4 (ENSCJPG00005019773) #13	ITM2B (ENSCJPG00005019774) #14	RB1 (ENSCJPG00005019775) #15	LPAR6 (ENSCJPG00005019776) #16	RCBTB2 (ENSCJPG00005019778) #17	CYSLTR2 (ENSCJPG00005019781) #18	FNDC3A (ENSCJPG00005019783) #19	MLNR (ENSCJPG00005019784) #20	CDADC1 (ENSCJPG00005019786) #22	CAB39L (ENSCJPG00005019787) #23	SETDB2 (ENSCJPG00005019788) #25	PHF11 (ENSCJPG00005019789) #26	RCBTB1 (ENSCJPG00005019790) #27	ARL11 (ENSCJPG00005019791) #28	KPNA3 (ENSCJPG00005019792) #30	SPRYD7 (ENSCJPG00005019793) #31	TRIM13 (ENSCJPG00005019794) #32	KCNRG (ENSCJPG00005019795)	DLEU7 (ENSCJPG00005019801) #34	RNASEH2B (ENSCJPG00005019803) #35	FAM124A (ENSCJPG00005019805) #36	SERPINE3 (ENSCJPG00005019806) #37	INTS6 (ENSCJPG00005019807)	WDFY2 (ENSCJPG00005019808)
African ostrich	MODERN SPECIES	755				LRCH1 (ENSSCUG00000010473) #8	ESD (ENSSCUG00000010471) #9	HTR2A (ENSSCUG00000010470) #10	SUCLA2 (ENSSCUG00000010468) #11	ENSSCUG00000010466	MED4 (ENSSCUG00000010465) #13	ITM2B (ENSSCUG00000010463) #14	LPAR6 (ENSSCUG00000010461) #16	RB1 (ENSSCUG00000010428) #15	RCBTB2 (ENSSCUG00000010412) #17	CYSLTR2 (ENSSCUG00000010410) #18	FNDC3A (ENSSCUG00000010406) #19	CDADC1 (ENSSCUG00000010405) #22	CAB39L (ENSSCUG00000010404) #23	SETDB2 (ENSSCUG00000010403) #25	PHF11 (ENSSCUG00000010401) #26	RCBTB1 (ENSSCUG00000010399) #27	KPNA3 (ENSSCUG00000010394) #30	SPRYD7 (ENSSCUG00000010390) #31	TRIM13 (ENSSCUG00000010387) #32	KCNRG (ENSSCUG00000010386)	RNASEH2B (ENSSCUG00000010377) #35	ENSSCUG00000010375	FAM124A (ENSSCUG00000010374) #36	SERPINE3 (ENSSCUG00000010373) #37	INTS6 (ENSSCUG00000010371)	WDFY2 (ENSSCUG00000010369)	ENSSCUG00000010366
Australian saltwater crocodile	DUPLICATION
Australian saltwater crocodile	MODERN SPECIES	49	ENSCPRG00005017523	ENSCPRG00005017526	ENSCPRG00005017527	TMTC1 (ENSCPRG00005017546)	IPO8 (ENSCPRG00005017590)	CAPRIN2 (ENSCPRG00005017615)	SINHCAF (ENSCPRG00005017648)	DENND5B (ENSCPRG00005017659)	ENSCPRG00005017686	AMN1 (ENSCPRG00005017690)	ENSCPRG00005017692	BICD1 (ENSCPRG00005017708)	FGD4 (ENSCPRG00005017740)	DNM1L (ENSCPRG00005017783)	YARS2 (ENSCPRG00005017845)	ENSCPRG00005017850 #22	PKP2 (ENSCPRG00005017861)	ENSCPRG00005017869	ENSCPRG00005017874	SYT10 (ENSCPRG00005017878)	SLC13A4 (ENSCPRG00005017885)	FAM180A (ENSCPRG00005017893)	MTPN (ENSCPRG00005017899)	CHRM2 (ENSCPRG00005017908)	PTN (ENSCPRG00005017909)	DGKI (ENSCPRG00005017914)	CREB3L2 (ENSCPRG00005017921)	SSBP1 (ENSCPRG00005017927)	WEE2 (ENSCPRG00005017929)	DENND11 (ENSCPRG00005017935)	AGK (ENSCPRG00005017939)
Australian saltwater crocodile	MODERN SPECIES	27	LCP1 (ENSCPRG00005001844)	RUBCNL (ENSCPRG00005001889) #7	LRCH1 (ENSCPRG00005001910) #8	ESD (ENSCPRG00005001929) #9	HTR2A (ENSCPRG00005001946) #10	SUCLA2 (ENSCPRG00005002006) #11	NUDT15 (ENSCPRG00005002025) #12	MED4 (ENSCPRG00005002030) #13	ITM2B (ENSCPRG00005002035) #14	RB1 (ENSCPRG00005002044) #15	LPAR6 (ENSCPRG00005002061) #16	RCBTB2 (ENSCPRG00005002083) #17	CYSLTR2 (ENSCPRG00005002091) #18	FNDC3A (ENSCPRG00005002157) #19	MLNR (ENSCPRG00005002169) #20	CDADC1 (ENSCPRG00005002171) #22	CAB39L (ENSCPRG00005002192) #23	SETDB2 (ENSCPRG00005002206) #25	ENSCPRG00005002212	PHF11 (ENSCPRG00005002216) #26	RCBTB1 (ENSCPRG00005002228) #27	KPNA3 (ENSCPRG00005002249) #30	SPRYD7 (ENSCPRG00005002255) #31	TRIM13 (ENSCPRG00005002256) #32	KCNRG (ENSCPRG00005002260)	DLEU7 (ENSCPRG00005002287) #34	RNASEH2B (ENSCPRG00005002315) #35	ENSCPRG00005002336	FAM124A (ENSCPRG00005002446) #36	SERPINE3 (ENSCPRG00005002466) #37	INTS6 (ENSCPRG00005002471)
Anura	ANCESTRAL SPECIES	27														ENSGT00940000159319 #19	ENSGT01100000263484.C.a #20	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #25	ENSGT00940000155814 #27	ENSGT00940000162731 #28	ENSGT00530000063715.b #29	ENSGT01050000244891.C.c.b #30	ENSGT00390000011048 #31	ENSGT00940000159715 #32	ENSGT00940000161898	ENSGT00390000011737 #34	ENSGT00390000011439 #35	ENSGT00940000162114	ENSGT00590000083134.a.a #36	ENSGT00940000160941 #37	ENSGT00390000016655.a.a.b
Frog	MODERN SPECIES	2	bcdin3d (ENSXETG00000040078)	faim2 (ENSXETG00000020393)	ENSXETG00000024581	aqp5 (ENSXETG00000024580)	aqp2 (ENSXETG00000020388)	ENSXETG00000013389	XB5780651 [provisional] (ENSXETG00000013385)	racgap1 (ENSXETG00000013383)	smarcd1 (ENSXETG00000013366)	gpd1 (ENSXETG00000013352)	cers5 (ENSXETG00000013344)	lima1 (ENSXETG00000013342)	fndc3a (ENSXETG00000013335) #19	ENSXETG00000047778	ENSXETG00000013318 #20	cdadc1 (ENSXETG00000013314) #22	cab39l (ENSXETG00000015659) #23	setdb2 (ENSXETG00000015666) #25	ENSXETG00000032387 ##26	ENSXETG00000047192 ##26	rcbtb1 (ENSXETG00000015675) #27	arl11 (ENSXETG00000015673) #28	ebpl (ENSXETG00000015682) #29	pamr1 (ENSXETG00000015677) #30	spryd7 (ENSXETG00000015683) #31	trim13 (ENSXETG00000015691) #32	kcnrg (ENSXETG00000034495)	dleu7 (ENSXETG00000014093) #34	rnaseh2b (ENSXETG00000020720) #35	fam124a (ENSXETG00000027168) #36	serpine3 (ENSXETG00000032417) #37
Leishan spiny toad	MODERN SPECIES	5	FAM124A (ENSLLEG00000002844) #36	ENSLLEG00000002877	ENSLLEG00000002907	RNASEH2B (ENSLLEG00000002974) #35	ENSLLEG00000003021 #34	KCNRG (ENSLLEG00000003028)	ENSLLEG00000003045 #32	EBPL (ENSLLEG00000003054) #29	KPNA3 (ENSLLEG00000003109) #30	SPRYD7 (ENSLLEG00000003208) #31	ARL11 (ENSLLEG00000003227) #28	ENSLLEG00000003241	FNDC3A (ENSLLEG00000003310) #19	ENSLLEG00000003581	ENSLLEG00000003585 #20	CDADC1 (ENSLLEG00000003600) #22	ENSLLEG00000003617	CAB39L (ENSLLEG00000003627) #23	SETDB2 (ENSLLEG00000003660) #25	ENSLLEG00000003754 #27	NUP58 (ENSLLEG00000003896)	SHISA2 (ENSLLEG00000013968)	ATP8A2 (ENSLLEG00000014136)	ENSLLEG00000014656	CDK8 (ENSLLEG00000014701)	ENSLLEG00000015281	WASF3 (ENSLLEG00000015310)	ENSLLEG00000015395	ENSLLEG00000015420	ENSLLEG00000015458	USP12 (ENSLLEG00000015515)
Coelacanth	MODERN SPECIES	843														FNDC3A (ENSLACG00000001668) #19	ENSLACG00000006994 #20	CDADC1 (ENSLACG00000007631) #22	CAB39L (ENSLACG00000008706) #23	SETDB2 (ENSLACG00000009640) #25	RCBTB1 (ENSLACG00000010653) #27	ARL11 (ENSLACG00000011405) #28	EBPL (ENSLACG00000011616) #29	KPNA3 (ENSLACG00000011927) #30	SPRYD7 (ENSLACG00000013011) #31	TRIM13 (ENSLACG00000013356) #32	KCNRG (ENSLACG00000013493)
Actinopterygii	ANCESTRAL SPECIES	98																ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000157874	ENSGT00940000157849	ENSGT00940000157872	ENSGT00940000162479.b	ENSGT00940000155360.B	ENSGT00940000156564	ENSGT01060000249379	ENSGT00940000155075.a.a	ENSGT00940000155401	ENSGT00390000006347.b	ENSGT00390000000917	ENSGT00980000198897	ENSGT00940000161024	ENSGT00940000157234
Neopterygii	ANCESTRAL SPECIES	15	ENSGT00390000004660.C.b	ENSGT00950000182852.A.a.b	ENSGT00390000006574	ENSGT00530000064962	ENSGT01090000260076.b.b	ENSGT00390000015719.d	ENSGT00390000011425.B	ENSGT00940000162114	ENSGT00390000011439 #35	ENSGT00940000171515	ENSGT00940000161898	ENSGT00940000159715 #32	ENSGT00390000011048 #31	ENSGT01050000244891.C.c.b #30	ENSGT00940000166383	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000157874	ENSGT00940000157872	ENSGT00940000157849	ENSGT00940000162479.b	ENSGT00940000155360.B	ENSGT00940000156564	ENSGT00940000155401	ENSGT00390000006347.b	ENSGT00390000000917	ENSGT00940000161024	ENSGT00940000157234	ENSGT00940000157678	ENSGT00940000161407	ENSGT00940000158920
Osteoglossocephalai	ANCESTRAL SPECIES	3	ENSGT01090000260076.b.b	ENSGT00390000015719.d	ENSGT00390000011425.B	ENSGT00940000162114	ENSGT00390000003838	ENSGT00390000011439 #35	ENSGT00940000171515	ENSGT00940000161898	ENSGT00940000159715 #32	ENSGT00390000011048 #31	ENSGT01050000244891.C.c.b #30	ENSGT00530000063715.b #29	ENSGT00940000166383	ENSGT00940000155814 #27	ENSGT00950000182865.b.a.b.b.b.a #26	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000157874.q.a	ENSGT00940000157872	ENSGT00940000157849	ENSGT00940000157874.q.b	ENSGT00940000162479.b	ENSGT00940000155360.B	ENSGT00950000182974.b	ENSGT00940000156374	ENSGT00940000163243	ENSGT00390000008846	ENSGT00940000159205	ENSGT00940000161984	ENSGT00390000015645	ENSGT00940000163829
Osteoglossiformes	ANCESTRAL SPECIES	32	ENSGT00390000008856	ENSGT00940000157308.j	ENSGT00530000063558.A.c.a.b	ENSGT00510000047809.j	ENSGT00390000005596.a	ENSGT00940000154317.b	ENSGT00390000004660.C.b	ENSGT00950000182852.A.a.b.f	ENSGT01090000260076.b.b.d	ENSGT00390000015719.d.f	ENSGT00390000011439 #35	ENSGT00940000159715 #32	ENSGT00390000011048.r #31	ENSGT01050000244891.C.c.b.t #30	ENSGT00940000155814.o.a #27	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b.e #23	ENSGT00940000157874.r	ENSGT00940000157872	ENSGT00940000157849.k	ENSGT00940000162479.b	ENSGT00940000155360.B.j	ENSGT00950000182974.b	ENSGT00940000156374	ENSGT00940000163243	ENSGT00390000010868	ENSGT00390000008846	ENSGT00940000159205	ENSGT00940000163031.b.a.a	ENSGT00390000005914.b	ENSGT00940000159177.m
P. kingsleyae	MODERN SPECIES	127										nr0b1 (ENSPKIG00000013421)	rnaseh2b (ENSPKIG00000013386) #35	trim13 (ENSPKIG00000013357) #32	SPRYD7 (ENSPKIG00000013321) #31	kpna3 (ENSPKIG00000013244) #30	rcbtb1 (ENSPKIG00000013163) #27	cdadc1 (ENSPKIG00000013133) #22	CAB39L (ENSPKIG00000013086) #23	MCF2L (ENSPKIG00000013023)	ENSPKIG00000012982	ATP11A (ENSPKIG00000012753)	ENSPKIG00000012624	ARHGEF7 (ENSPKIG00000012477)	txndc9 (ENSPKIG00000012396)	mrpl30 (ENSPKIG00000012379)	MGAT4A (ENSPKIG00000012322)	coa5 (ENSPKIG00000012293)	si:dkey-4e7.3 (ENSPKIG00000012264)	INPP4A (ENSPKIG00000012052)	slc9a2 (ENSPKIG00000011951)	ENSPKIG00000011935	pou3f3b (ENSPKIG00000011908)
Asian bonytongue	MODERN SPECIES	5	ENSSFOG00015026925	ENSSFOG00015010017	TFG (ENSSFOG00015010050)	jagn1b (ENSSFOG00015010085)	col8a1a (ENSSFOG00015010102)	tmem30c (ENSSFOG00015010122)	FILIP1L (ENSSFOG00015010150)	IL1RAPL1 (ENSSFOG00015010161)	nr0b1 (ENSSFOG00015030959)	rnaseh2b (ENSSFOG00015010190) #35	dleu7 (ENSSFOG00015010221)	trim13 (ENSSFOG00015010232) #32	SPRYD7 (ENSSFOG00015010238) #31	kpna3 (ENSSFOG00015010262) #30	rcbtb1 (ENSSFOG00015030528) #27	cdadc1 (ENSSFOG00015028089) #22	MCF2L (ENSSFOG00015010397)	ATP11A (ENSSFOG00015010486)	ARHGEF7 (ENSSFOG00015010764)	txndc9 (ENSSFOG00015010960)	mrpl30 (ENSSFOG00015027487)	MGAT4A (ENSSFOG00015010985)	coa5 (ENSSFOG00015011032)	si:dkey-4e7.3 (ENSSFOG00015011049)	INPP4A (ENSSFOG00015011105)	pou3f3b (ENSSFOG00015031593)	GPR45 (ENSSFOG00015011211)	tgfbrap1 (ENSSFOG00015011218)	fhl2b (ENSSFOG00015011237)	ENSSFOG00015028132	nck2b (ENSSFOG00015028086)
Clupeocephala	ANCESTRAL SPECIES	79	ENSGT00390000006574	ENSGT00950000182852.A.a.b.d	ENSGT01090000260076.b.b.b	ENSGT00390000015719.d.d	ENSGT00390000011425.B	ENSGT00390000011439 #35	ENSGT00940000159715 #32	ENSGT00390000011048 #31	ENSGT01050000244891.C.c.b #30	ENSGT00530000063715.b #29	ENSGT00940000166383	ENSGT00940000155814 #27	ENSGT00950000182865.b.a.b.b.b.a #26	ENSGT00940000157874.q.b	ENSGT00940000157849.m.a	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000157874.q.a	ENSGT00940000157872	ENSGT00940000157849.n	ENSGT00940000162479.a	ENSGT00940000155360.B.k	ENSGT00940000163243	ENSGT00390000008846	ENSGT00940000159205	ENSGT00940000163031.b.a.a
Otomorpha	ANCESTRAL SPECIES	267	ENSGT01050000244864.C.f.f	ENSGT00510000046499	ENSGT00940000153577.A	ENSGT00390000013113	ENSGT00940000157065	ENSGT00940000158589.b.b	ENSGT00390000003874.a.b	ENSGT00950000182836.b.b.b.a	ENSGT00940000171515	ENSGT00940000161898	ENSGT00390000011048.w #31	ENSGT01050000244891.C.c.b.q #30	ENSGT00530000063715.b #29	ENSGT00940000166383	ENSGT00940000155814 #27	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000157874.q.a	ENSGT00940000157872	ENSGT00940000157849.n	ENSGT00940000162479.a	ENSGT00940000155360.B.k	ENSGT00940000163243	ENSGT00390000008846
Otophysi	ANCESTRAL SPECIES	25	ENSGT00730000110915.b	ENSGT00510000046499	ENSGT00940000153577.A	ENSGT00390000013113	ENSGT00940000157065	ENSGT00940000158589.b.b	ENSGT00390000003874.a.b	ENSGT00950000182836.b.b.b.a	ENSGT00940000171515	ENSGT00940000161898	ENSGT00390000011048.w #31	ENSGT01050000244891.C.c.b.q #30	ENSGT00530000063715.b #29	ENSGT00940000166383	ENSGT00940000155814 #27	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000157874.q.a	ENSGT00940000157872	ENSGT00940000157849.n	ENSGT00940000162479.a	ENSGT00940000155360.B.k	ENSGT00940000163243	ENSGT00390000008846	ENSGT00940000159130	ENSGT00940000158914	ENSGT00940000154990.fb.a	ENSGT00390000009916	ENSGT00940000154382.a.a.l	ENSGT00950000183036.b.e	ENSGT00390000000976
Characiphysae	ANCESTRAL SPECIES	9	ENSGT00730000110915.b	ENSGT00940000179335	ENSGT00940000153577.A	ENSGT00390000013113	ENSGT00940000157065	ENSGT00940000158589.b.b	ENSGT00390000003874.a.b	ENSGT00950000182836.b.b.b.a	ENSGT00940000171515	ENSGT00940000161898	ENSGT00390000011048.w #31	ENSGT01050000244891.C.c.b.q #30	ENSGT00530000063715.b #29	ENSGT00940000166383	ENSGT00940000155814 #27	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000157874.q.a	ENSGT00940000157872	ENSGT00940000157849.n	ENSGT00940000162479.a	ENSGT00940000155360.B.k	ENSGT00940000163243	ENSGT00390000008846	ENSGT00940000156830.b	ENSGT00940000159666.d	ENSGT00390000003582.d	ENSGT00940000159130	ENSGT00940000158914	ENSGT00940000154990.fb.a	ENSGT00390000009916
Channel catfish	MODERN SPECIES	18	setd4 (ENSIPUG00000020120)	cryzl1 (ENSIPUG00000020153)	ITSN1 (ENSIPUG00000020172)	ENSIPUG00000020221	PKNOX1 (ENSIPUG00000020239)	ENSIPUG00000020258	pdxkb (ENSIPUG00000020281)	agpat3 (ENSIPUG00000020311)	dleu7 (ENSIPUG00000020350)	kcnrg (ENSIPUG00000020361)	spryd7 (ENSIPUG00000020366) #31	Kpna3 (ENSIPUG00000020383) #30	ebpl (ENSIPUG00000020403) #29	arl11 (ENSIPUG00000020426)	rcbtb1 (ENSIPUG00000020428) #27	cdadc1 (ENSIPUG00000020446) #22	cab39l (ENSIPUG00000020458) #23	mcf2l (ENSIPUG00000020494)	tubgcp3 (ENSIPUG00000020648)	ENSIPUG00000020693	atp11a (ENSIPUG00000020705)	SOX1 (ENSIPUG00000020846)	arhgef7 (ENSIPUG00000020874)	eif5b (ENSIPUG00000020910)	lipt1 (ENSIPUG00000020941)	ENSIPUG00000020943	PNPLA6 (ENSIPUG00000020961)	map2k7 (ENSIPUG00000021102)	PKN1 (ENSIPUG00000021130)	c26h19orf67 (ENSIPUG00000021206)	ENSIPUG00000021220
Characiphysae_b	ANCESTRAL SPECIES	117	ENSGT01050000244864.C.f.f	ENSGT00730000110915.b	ENSGT00940000179335	ENSGT00940000153577.A	ENSGT00390000013113	ENSGT00940000157065	ENSGT00940000158589.b.b	ENSGT00390000003874.a.b	ENSGT00950000182836.b.b.b.a	ENSGT00940000171515	ENSGT00390000011048.w #31	ENSGT01050000244891.C.c.b.q #30	ENSGT00530000063715.b #29	ENSGT00940000166383	ENSGT00940000155814 #27	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000157874.q.a	ENSGT00940000157872	ENSGT00940000157849.n	ENSGT00940000162479.a	ENSGT00940000155360.B.k	ENSGT00940000163243	ENSGT00390000008846	ENSGT00940000159666.d	ENSGT00390000003582.d	ENSGT00940000159130	ENSGT00940000158914	ENSGT00940000154990.fb.a	ENSGT00390000009916	ENSGT00940000154382.a.a.l
Characoidei	ANCESTRAL SPECIES	147	ENSGT00730000110915.b	ENSGT00940000179335	ENSGT00510000046499	ENSGT00940000153577.A	ENSGT00390000013113	ENSGT00940000157065	ENSGT00940000158589.b.b	ENSGT00390000003874.a.b	ENSGT00950000182836.b.b.b.a	ENSGT00940000171515	ENSGT00390000011048.w #31	ENSGT01050000244891.C.c.b.q #30	ENSGT00530000063715.b #29	ENSGT00940000166383	ENSGT00940000155814 #27	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000157874.q.a	ENSGT00940000157872	ENSGT00940000157849.n	ENSGT00940000162479.a	ENSGT00940000155360.B.k	ENSGT00940000163243	ENSGT00390000008846	ENSGT00940000159666.d	ENSGT00390000003582.d	ENSGT00940000159130	ENSGT00940000158914	ENSGT00940000154990.fb.a	ENSGT00390000009916	ENSGT00940000154382.a.a.l
Red-bellied piranha	MODERN SPECIES	59	cbr1 (ENSPNAG00000029415)	setd4 (ENSPNAG00000029275)	cryzl1 (ENSPNAG00000004544)	ITSN1 (ENSPNAG00000004518)	ENSPNAG00000025611	ENSPNAG00000025605	ENSPNAG00000025569	pdxkb (ENSPNAG00000025536)	agpat3 (ENSPNAG00000004913)	dleu7 (ENSPNAG00000006544)	spryd7a (ENSPNAG00000025399) #31	kpna3 (ENSPNAG00000025361) #30	ebpl (ENSPNAG00000025238) #29	arl11 (ENSPNAG00000025213)	rcbtb1 (ENSPNAG00000025189) #27	cdadc1 (ENSPNAG00000025112) #22	cab39l (ENSPNAG00000025105) #23	MCF2L (ENSPNAG00000025029)	tubgcp3 (ENSPNAG00000024841)	ATP11A (ENSPNAG00000005022)	SOX1 (ENSPNAG00000024384)	arhgef7b (ENSPNAG00000023914)	ENSPNAG00000023852	lipt1 (ENSPNAG00000023826)	ATP5PD (ENSPNAG00000023800)	PNPLA6 (ENSPNAG00000023748)	map2k7 (ENSPNAG00000023527)	PKN1 (ENSPNAG00000023460)	si:ch211-214c7.5 (ENSPNAG00000023282)	ENSPNAG00000023144	mcoln1a (ENSPNAG00000023123)
Mexicana tetra	MODERN SPECIES	3	cryzl1 (ENSAMXG00000037451)	ITSN1 (ENSAMXG00000012436)	ENSAMXG00000012433	ENSAMXG00000012410	ENSAMXG00000012377	pdxkb (ENSAMXG00000012352)	agpat3 (ENSAMXG00000041421)	ENSAMXG00000025823	dleu7 (ENSAMXG00000037461)	spryd7a (ENSAMXG00000040876) #31	ENSAMXG00000041792	kpna3 (ENSAMXG00000012307) #30	ebpl (ENSAMXG00000041654) #29	arl11 (ENSAMXG00000012281)	rcbtb1 (ENSAMXG00000042184) #27	cdadc1 (ENSAMXG00000012223) #22	cab39l (ENSAMXG00000012212) #23	ATP11A (ENSAMXG00000018350)	SOX1 (ENSAMXG00000035402)	ENSAMXG00000030734	ENSAMXG00000039391	arhgef7b (ENSAMXG00000035958)	ENSAMXG00000018383	lipt1 (ENSAMXG00000025104)	ENSAMXG00000040244	PNPLA6 (ENSAMXG00000018423)	map2k7 (ENSAMXG00000018484)	PKN1 (ENSAMXG00000018504)	si:ch211-214c7.5 (ENSAMXG00000018514)	ENSAMXG00000018526	mcoln1a (ENSAMXG00000018550)
Electric eel	MODERN SPECIES	149	cbr1 (ENSEEEG00000023544)	setd4 (ENSEEEG00000023543)	cryzl1 (ENSEEEG00000023542)	ITSN1 (ENSEEEG00000023539)	ENSEEEG00000023531	ENSEEEG00000023530	ENSEEEG00000023529	pdxkb (ENSEEEG00000023528)	agpat3 (ENSEEEG00000023524)	dleu7 (ENSEEEG00000023520)	spryd7a (ENSEEEG00000023517) #31	kpna3 (ENSEEEG00000023036) #30	ebpl (ENSEEEG00000023013) #29	arl11 (ENSEEEG00000023012)	rcbtb1 (ENSEEEG00000023011) #27	cdadc1 (ENSEEEG00000023010) #22	cab39l (ENSEEEG00000023007) #23	MCF2L (ENSEEEG00000023002)	tubgcp3 (ENSEEEG00000023000)	ATP11A (ENSEEEG00000022995)	sox1b (ENSEEEG00000022994)
Cyprinoidei	ANCESTRAL SPECIES	5	ENSGT01050000244864.C.f.f	ENSGT00730000110915.b	ENSGT00510000046499.z.a	ENSGT00940000153577.A	ENSGT00390000013113	ENSGT00940000157065	ENSGT00940000158589.b.b	ENSGT00390000003874.a.b	ENSGT00950000182836.b.b.b.a	ENSGT00940000171515	ENSGT00390000011048.w #31	ENSGT01050000244891.C.c.b.q #30	ENSGT00530000063715.b #29	ENSGT00940000166383	ENSGT00940000155814 #27	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000157874.q.a	ENSGT00940000157872	ENSGT00940000157849.n	ENSGT00940000155360.B.k	ENSGT00940000163243	ENSGT00390000008846	ENSGT00940000159130	ENSGT00940000158914	ENSGT00940000154990.fb.a	ENSGT00390000009916	ENSGT00940000154382.a.a.l	ENSGT00950000183036.b.e	ENSGT00390000000976	ENSGT00530000063960
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	291									ENSGT00950000182836.b.b.b.a.m	ENSGT00940000171515.a	ENSGT00390000011048.w.b #31	ENSGT01050000244891.C.c.b.q.b #30	ENSGT00530000063715.b.f #29	ENSGT00940000166383.b	ENSGT00940000155814.k #27	ENSGT00940000153676.b.i #22	ENSGT00390000004360.a.b.a.a.b.c #23	ENSGT00940000157874.q.a.b	ENSGT00940000157872.g	ENSGT00940000157849.n.a	ENSGT00940000155360.B.k.a	ENSGT00940000163243.b	ENSGT00390000008846.d	ENSGT00940000159130.b	ENSGT00940000158914.c	ENSGT00940000154990.fb.a.b	ENSGT00390000009916	ENSGT00940000154382.a.a.l.b	ENSGT00950000183036.b.e.e	ENSGT00390000000976.f.a	ENSGT00530000063960.c
Cyprininae_a	ANCESTRAL SPECIES	76													ENSGT00530000063715.b.e #29	ENSGT00940000166383.b	ENSGT00940000155814.k #27	ENSGT00940000153676.b.i #22	ENSGT00390000004360.a.b.a.a.b.c #23	ENSGT00940000157874.q.a.b	ENSGT00940000157872.g	ENSGT00940000157849.n.a	ENSGT00940000162479.b.n	ENSGT00940000155360.B.k.a	ENSGT00940000163243.b	ENSGT00390000008846.d	ENSGT00940000159130.b	ENSGT00940000158914.c	ENSGT00940000154990.fb.a.b	ENSGT00390000009916	ENSGT00940000154382.a.a.l.b	ENSGT00950000183036.b.e.e	ENSGT00390000000976.f.a
Golden-line barbel	MODERN SPECIES	748		cbr1 (ENSSGRG00000030544)	setd4 (ENSSGRG00000030545)	cryzl1 (ENSSGRG00000030548)	ITSN1 (ENSSGRG00000030843)	ENSSGRG00000033153	ENSSGRG00000033154	TMPRSS3 (ENSSGRG00000033160)	pdxkb (ENSSGRG00000033163)	agpat3 (ENSSGRG00000033300)	dleu7 (ENSSGRG00000033302)	kpna3 (ENSSGRG00000033321) #30	ebpl (ENSSGRG00000034117) #29	arl11 (ENSSGRG00000034118)	rcbtb1 (ENSSGRG00000034119) #27	cdadc1 (ENSSGRG00000034179) #22	cab39l (ENSSGRG00000034180) #23	MCF2L (ENSSGRG00000034228)
Common carp reference	MODERN SPECIES	27	gja8b (ENSCCRG00000059724)	gja5b (ENSCCRG00000036560)	bcl9 (ENSCCRG00000036555)	cbr1 (ENSCCRG00000016100)	setd4 (ENSCCRG00000016096)	cryzl1 (ENSCCRG00000016091)	ENSCCRG00000023880	ENSCCRG00000029837	ENSCCRG00000024402	pdxkb (ENSCCRG00000015920)	agpat3 (ENSCCRG00000066238)	spryd7a (ENSCCRG00000056049) #31	kpna3 (ENSCCRG00000013681) #30	ebpl (ENSCCRG00000015744) #29	rcbtb1 (ENSCCRG00000015729) #27	cdadc1 (ENSCCRG00000061386) #22	cab39l (ENSCCRG00000058713) #23	ENSCCRG00000013453	tubgcp3 (ENSCCRG00000015786)	ENSCCRG00000015839	sox1b (ENSCCRG00000081551)	arhgef7b (ENSCCRG00000022117)	lipt1 (ENSCCRG00000068783)	ENSCCRG00000029288	ENSCCRG00000022089	map2k7 (ENSCCRG00000034605)	ENSCCRG00000057692	ENSCCRG00000000627	si:ch211-214c7.5 (ENSCCRG00000079126)	mcoln1a (ENSCCRG00000041335)	trappc5 (ENSCCRG00000052406)
Cyprininae	ANCESTRAL SPECIES	38	ENSGT00390000013113.t	ENSGT00940000157065.u	ENSGT00390000008902.kb.l.a.a	ENSGT00940000159505.b	ENSGT00940000158589.b.b.a	ENSGT00390000003874.a.b.f	ENSGT00940000158589.b.b.b	ENSGT00390000003874.a.b.e	ENSGT00950000182836.b.b.b.a.n	ENSGT00940000171515.b	ENSGT00390000011048.w.a #31	ENSGT01050000244891.C.c.b.q.a #30	ENSGT00530000063715.b.e #29	ENSGT00940000166383.a	ENSGT00940000155814.l #27	ENSGT00940000153676.b.j #22	ENSGT00390000004360.a.b.a.a.b.d #23	ENSGT00940000157874.q.a.a	ENSGT00940000157872.h	ENSGT00940000157849.n.b	ENSGT00940000155360.B.k.b	ENSGT00940000163243.a	ENSGT00390000008846.c	ENSGT00940000159130.a	ENSGT00940000158914.d	ENSGT00940000154990.fb.a.a	ENSGT00940000154382.a.a.l.a	ENSGT00950000183036.b.e.f	ENSGT00390000000976.f.b	ENSGT00530000063960.d	ENSGT00940000158004.p
Goldfish	MODERN SPECIES		lrrc58a (ENSCARG00000009666)	fstl1a (ENSCARG00000009617)	gja8b (ENSCARG00000009598)	gja5b (ENSCARG00000009592)	bcl9 (ENSCARG00000009578)	morc3b (ENSCARG00000030064)	cryzl1 (ENSCARG00000029858)	ITSN1 (ENSCARG00000024109)	ENSCARG00000023873	pdxkb (ENSCARG00000023845)	agpat3 (ENSCARG00000023832)	spryd7a (ENSCARG00000023816) #31	kpna3 (ENSCARG00000023539) #30	arl11 (ENSCARG00000023504)	rcbtb1 (ENSCARG00000023134) #27	cdadc1 (ENSCARG00000023111) #22	cab39l (ENSCARG00000023106) #23	MCF2L (ENSCARG00000022778)	tubgcp3 (ENSCARG00000022717)	ENSCARG00000022702	ATP11A (ENSCARG00000022535)	sox1b (ENSCARG00000022507)	arhgef7b (ENSCARG00000020751)	ENSCARG00000020114	lipt1 (ENSCARG00000020094)	PNPLA6 (ENSCARG00000014277)	map2k7 (ENSCARG00000014078)	PKN1 (ENSCARG00000012630)	ENSCARG00000012576	mcoln1a (ENSCARG00000011233)	trappc5 (ENSCARG00000011176)
Cyprininae_a	ANCESTRAL SPECIES	66	ENSGT00390000013113.t	ENSGT00940000157065.u	ENSGT00390000008902.kb.l.a.a	ENSGT00940000159505.b	ENSGT00940000158589.b.b.b	ENSGT00390000003874.a.b.e	ENSGT00950000182836.b.b.b.a.n	ENSGT00940000171515.b	ENSGT00390000011048.w.a #31	ENSGT01050000244891.C.c.b.q.a #30	ENSGT00390000011048.w.b #31	ENSGT01050000244891.C.c.b.q.b #30	ENSGT00530000063715.b.f #29	ENSGT00940000166383.a	ENSGT00940000155814.l #27	ENSGT00940000153676.b.j #22	ENSGT00390000004360.a.b.a.a.b.d #23	ENSGT00940000157874.q.a.a	ENSGT00940000157872.h	ENSGT00940000157849.n.b	ENSGT00940000155360.B.k.b	ENSGT00940000163243.a	ENSGT00390000008846.c	ENSGT00940000159130.a	ENSGT00940000158914.d	ENSGT00940000154990.fb.a.a	ENSGT00940000154382.a.a.l.a	ENSGT00950000183036.b.e.f	ENSGT00390000000976.f.b	ENSGT00530000063960.d	ENSGT00940000158004.p
Common carp reference	MODERN SPECIES	22	ENSCCRG00000060268	ENSCCRG00000081465	cryzl1 (ENSCCRG00000024163)	ENSCCRG00000070675	ENSCCRG00000055587	ENSCCRG00000016032	pdxkb (ENSCCRG00000061747)	dleu7 (ENSCCRG00000019748)	ENSCCRG00000073096	agpat3 (ENSCCRG00000015761)	spryd7a (ENSCCRG00000015462) #31	kpna3 (ENSCCRG00000082723) #30	ebpl (ENSCCRG00000013658) #29	arl11 (ENSCCRG00000015739)	rcbtb1 (ENSCCRG00000013618) #27	cdadc1 (ENSCCRG00000013606) #22	cab39l (ENSCCRG00000074971) #23	ENSCCRG00000015680	tubgcp3 (ENSCCRG00000013430)	ENSCCRG00000057536	ENSCCRG00000026907	arhgef7b (ENSCCRG00000077569)	ENSCCRG00000062970	lipt1 (ENSCCRG00000058177)	ENSCCRG00000039927	map2k7 (ENSCCRG00000067975)	ENSCCRG00000016426	si:ch211-214c7.5 (ENSCCRG00000052425)	ENSCCRG00000062759	mcoln1a (ENSCCRG00000052416)	trappc5 (ENSCCRG00000041302)
Golden-line barbel	MODERN SPECIES	338	setd4 (ENSSGRG00000036078)	cryzl1 (ENSSGRG00000036037)	ITSN1 (ENSSGRG00000035039)	ENSSGRG00000035020	ENSSGRG00000035018	TMPRSS3 (ENSSGRG00000035015)	pdxkb (ENSSGRG00000035005)	agpat3 (ENSSGRG00000035002)	dleu7 (ENSSGRG00000034999)	dleu7 (ENSSGRG00000034998)	kpna3 (ENSSGRG00000033197) #30	ebpl (ENSSGRG00000033176) #29	arl11 (ENSSGRG00000033175)	arl11 (ENSSGRG00000033174)	rcbtb1 (ENSSGRG00000033173) #27	cdadc1 (ENSSGRG00000033171) #22	cab39l (ENSSGRG00000033167) #23	ENSSGRG00000033164	tubgcp3 (ENSSGRG00000032857)	ATP11A (ENSSGRG00000032229)	arhgef7b (ENSSGRG00000030952)	ENSSGRG00000030930	lipt1 (ENSSGRG00000030929)	PNPLA6 (ENSSGRG00000030927)	map2k7 (ENSSGRG00000030917)	PKN1 (ENSSGRG00000028571)	ENSSGRG00000028519	ENSSGRG00000028517	mcoln1a (ENSSGRG00000027966)	trappc5 (ENSSGRG00000027962)	serhl (ENSSGRG00000027961)
Zebrafish	MODERN SPECIES		mhc1zea (ENSDARG00000001470)	setd4 (ENSDARG00000036592)	cryzl1 (ENSDARG00000026902)	ITSN1 (ENSDARG00000000086)	ENSDARG00000089853	PKNOX1 (ENSDARG00000036542)	TMPRSS3 (ENSDARG00000036545)	pdxkb (ENSDARG00000036546)	agpat3 (ENSDARG00000036549)	dleu7 (ENSDARG00000094160)	spryd7a (ENSDARG00000052624) #31	kpna3 (ENSDARG00000052641) #30	ebpl (ENSDARG00000036636) #29	arl11 (ENSDARG00000036637)	rcbtb1 (ENSDARG00000036645) #27	cdadc1 (ENSDARG00000036650) #22	cab39l (ENSDARG00000036658) #23	si:busm1-105l16.2 (ENSDARG00000070858)	MCF2L (ENSDARG00000075859)	tubgcp3 (ENSDARG00000029133)	ATP11A (ENSDARG00000008413)	ENSDARG00000053340	sox1b (ENSDARG00000008131)	ENSDARG00000052677	arhgef7b (ENSDARG00000073848)	ENSDARG00000016548	lipt1 (ENSDARG00000025233)	PNPLA6 (ENSDARG00000010773)	map2k7 (ENSDARG00000008279)	PKN1 (ENSDARG00000060184)	si:ch211-214c7.5 (ENSDARG00000060187)
Clupeiformes	ANCESTRAL SPECIES	123	ENSGT00950000183028.a.a.a.g.b.g.b	ENSGT00530000063596.A.i	ENSGT00390000011204	ENSGT00940000164385.a.a.a.b.d	ENSGT00390000017581.b.b	ENSGT00940000156807.f	ENSGT00940000157360.c	ENSGT00390000018553	ENSGT00940000163031.b.a.a	ENSGT00940000159205	ENSGT00730000111163	ENSGT00940000159160	ENSGT00550000075118	ENSGT00390000009001	ENSGT00940000156552.c.b	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000157874.q.a	ENSGT00940000157872	ENSGT00940000157849.n	ENSGT00940000155360.B.k	ENSGT00940000163243	ENSGT00390000008846	ENSGT00950000183030	ENSGT00940000157128	ENSGT00440000033329.b.a.a	ENSGT00940000155063.c.a.a
Denticle herring	MODERN SPECIES	6	mrps9 (ENSDCDG00000005332)	pou3f3b (ENSDCDG00000005343)	TMEM182 (ENSDCDG00000005344)	inpp4ab (ENSDCDG00000005430)	ENSDCDG00000015334	ENSDCDG00000015335	unc50 (ENSDCDG00000015339)	ENSDCDG00000015342	cpb2 (ENSDCDG00000015354)	alg11 (ENSDCDG00000015384)	spp2 (ENSDCDG00000015395)	raph1b (ENSDCDG00000015420)	rbbp9 (ENSDCDG00000016917)	zmynd10 (ENSDCDG00000016923)	gspt1l (ENSDCDG00000016935)	cdadc1 (ENSDCDG00000016937) #22	cab39l (ENSDCDG00000016942) #23	MCF2L (ENSDCDG00000017005)	tubgcp3 (ENSDCDG00000020521)	ATP11A (ENSDCDG00000020652)	arhgef7b (ENSDCDG00000025684)	ENSDCDG00000028317	lipt1 (ENSDCDG00000028402)	ITLN1 (ENSDCDG00000028405)	rpl31 (ENSDCDG00000028408)	chst10 (ENSDCDG00000028413)	LONRF2 (ENSDCDG00000028414)	ENSDCDG00000028443	ugt1b1 (ENSDCDG00000028733)	ugt1b2 (ENSDCDG00000028735)	ENSDCDG00000028742
Euteleosteomorpha	ANCESTRAL SPECIES	129	ENSGT00940000172034	ENSGT00940000159255	ENSGT01100000263672	ENSGT00940000159602	ENSGT00940000159870	ENSGT01030000234765	ENSGT00940000154840.b.e.a	ENSGT00610000086518	ENSGT01090000260251	ENSGT01030000234540.E	ENSGT00940000158367	ENSGT00940000161679.b	ENSGT00940000153981.A	ENSGT00940000159196	ENSGT00940000155814.m #27	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000157874.q.a	ENSGT00940000157872	ENSGT00940000157849.n.c	ENSGT00940000162479.a	ENSGT00940000155360.B.k	ENSGT00940000163243	ENSGT00390000008846	ENSGT00940000159205	ENSGT00940000163031.b.a.a	ENSGT00390000018553	ENSGT00940000164275.f	ENSGT00940000157360.c	ENSGT00940000156807.f	ENSGT00390000017581.b.b
Protacanthopterygii	ANCESTRAL SPECIES	46	ENSGT00940000154840.b.e.a.c	ENSGT00610000086518	ENSGT01090000260251	ENSGT01030000234540.E	ENSGT00940000158367	ENSGT00940000161679.b	ENSGT00940000153981.A	ENSGT00940000159196	ENSGT00940000154443.e.c	ENSGT00940000155375.n	ENSGT00940000162114	ENSGT01050000244891.C.c.b.p #30	ENSGT00530000063715.b #29	ENSGT00940000166383.c	ENSGT00940000155814.m #27	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000157874.q.a	ENSGT00940000157872	ENSGT00940000157849.n.c	ENSGT00940000155360.B.k	ENSGT00940000163243	ENSGT00390000008846	ENSGT00940000159205	ENSGT00940000163031.b.a.a	ENSGT00390000018553	ENSGT00940000164275.f	ENSGT00940000157360.c	ENSGT00390000017581.b.b	ENSGT00940000164385.a.a.a.b	ENSGT00390000011204
Salmoninae	ANCESTRAL SPECIES	240	ENSGT00610000086518.d.a	ENSGT00970000194096.a	ENSGT00940000158367.g	ENSGT00940000161679.b.c	ENSGT00940000153981.A	ENSGT00940000159196.j.b	ENSGT00970000197763	ENSGT00940000159196.j.a	ENSGT00940000154443.e.c.b.a	ENSGT00940000155375.n	ENSGT00940000162114	ENSGT01050000244891.C.c.b.p.a.b #30	ENSGT00530000063715.b #29	ENSGT00940000166383.c	ENSGT00940000155814.m.c #27	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b.b #23	ENSGT00940000157874.q.a.d	ENSGT00940000157872.j
Salmoninae_a	ANCESTRAL SPECIES	114												ENSGT01050000244891.C.c.b.p.a.b #30	ENSGT00530000063715.b.h #29	ENSGT00940000166383.c.a	ENSGT00940000155814.m.c #27	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b.b #23	ENSGT00940000157874.q.a.d	ENSGT00940000153981.A.e	ENSGT00940000159196.j.a	ENSGT00940000154443.e.c.b.a	ENSGT00940000155375.n	ENSGT00940000162114.e	ENSGT00940000171515.f	ENSGT00940000161898.c	ENSGT01050000244891.C.c.b.p.a.a #30	ENSGT00530000063715.b.g #29	ENSGT00940000166383.c.b	ENSGT00940000155814.m.d #27	ENSGT00390000004360.a.b.a.a.b.a.b #23	ENSGT00940000157874.q.a.c.a
Salmo	DUPLICATION
Salmo	ANCESTRAL SPECIES	72	ENSGT00990000204406	ENSGT00970000194096.a	ENSGT00940000158367.g	ENSGT00940000161679.b.c.a	ENSGT00940000153981.A.e	ENSGT00940000159196.j.a	ENSGT00940000154443.e.c.a	ENSGT00940000155375.n.a	ENSGT00940000162114.f	ENSGT00940000171515.e	ENSGT00940000161898.c.b	ENSGT01050000244891.C.c.b.p.b #30	ENSGT00530000063715.b.g #29	ENSGT00940000166383.c.b	ENSGT00940000155814.m.d #27	ENSGT00940000153676.b.k #22	ENSGT00390000004360.a.b.a.a.b.b.b #23	ENSGT00940000157874.q.a.d.a	ENSGT00940000157872.i	ENSGT00940000157849.n.c.c	ENSGT00990000211402	ENSGT00940000162479.b.i.b.c.a	ENSGT00940000155360.B.k.c.a	ENSGT00940000163243.f	ENSGT00390000008846.a	ENSGT00940000159205.gb.a	ENSGT00940000163031.b.a.a.d	ENSGT00390000018553.e.b	ENSGT00940000164275.f.f	ENSGT00940000157360.c.i.a	ENSGT00390000017581.b.b.d.b
River trout	MODERN SPECIES	36	ENSSTUG00000026036	ENSSTUG00000026001	slc5a3a (ENSSTUG00000025996)	GPR180 (ENSSTUG00000025932)	TGDS (ENSSTUG00000025848)	ddx3xa (ENSSTUG00000025835)	ENSSTUG00000025824	usp9 (ENSSTUG00000025487)	ENSSTUG00000025461	dleu7 (ENSSTUG00000025385)	KCNRG (ENSSTUG00000025357)	kpna3 (ENSSTUG00000025256) #30	ebpl (ENSSTUG00000025250) #29	arl11 (ENSSTUG00000025236)	rcbtb1 (ENSSTUG00000025069) #27	cdadc1 (ENSSTUG00000025022) #22	cab39l (ENSSTUG00000024973) #23	MCF2L (ENSSTUG00000024648)	tubgcp3 (ENSSTUG00000024512)	ATP11A (ENSSTUG00000018974)	sox1b (ENSSTUG00000018630)	arhgef7b (ENSSTUG00000015815)	ENSSTUG00000014720	lipt1 (ENSSTUG00000014646)	tsga10 (ENSSTUG00000014562)	ENSSTUG00000014543	ENSSTUG00000014518	unc50 (ENSSTUG00000014502)	ENSSTUG00000014497	inpp4ab (ENSSTUG00000013043)	ENSSTUG00000012937
Atlantic salmon	MODERN SPECIES	7	ENSSSAG00000091051	ENSSSAG00000079711	ENSSSAG00000079707	slc5a3a (ENSSSAG00000085714)	ENSSSAG00000079697	ENSSSAG00000079694	ENSSSAG00000079779	ENSSSAG00000079297	ENSSSAG00000080764	dleu7 (ENSSSAG00000080791)	ENSSSAG00000094505	kpna3 (ENSSSAG00000077541) #30	ENSSSAG00000089145	arl11 (ENSSSAG00000056018)	rcbtb1 (ENSSSAG00000077678) #27	cdadc1 (ENSSSAG00000101071) #22	cab39l (ENSSSAG00000120036) #23	ENSSSAG00000118166	tubgcp3 (ENSSSAG00000006171)	ENSSSAG00000112221	ENSSSAG00000028853	sox1b (ENSSSAG00000091784)	arhgef7b (ENSSSAG00000039606)	ENSSSAG00000039332	lipt1 (ENSSSAG00000039313)	ENSSSAG00000039034	ENSSSAG00000039005	ENSSSAG00000038673	inpp4ab (ENSSSAG00000031267)	ENSSSAG00000031058	pou3f3b (ENSSSAG00000083901)
Salmo	ANCESTRAL SPECIES	84	ENSGT01030000234540.E	ENSGT00940000158367.h	ENSGT00940000161679.b.c.b	ENSGT00940000153981.A.f	ENSGT00940000159196.j.b	ENSGT00940000154443.e.c.b.a	ENSGT00940000155375.n.b	ENSGT00940000162114.e	ENSGT00940000171515.f	ENSGT00940000161898.c.a	ENSGT01050000244891.C.c.b.p.a.a #30	ENSGT01050000244891.C.c.b.p.a.b #30	ENSGT00530000063715.b.h #29	ENSGT00940000166383.c.a	ENSGT00940000155814.m.c #27	ENSGT00940000153676.b.l #22	ENSGT00390000004360.a.b.a.a.b.b.a #23	ENSGT00940000157874.q.a.d.b	ENSGT00940000157872.j	ENSGT00940000157849.n.c.d	ENSGT00940000162479.b.i.b.c.b	ENSGT00940000155360.B.k.d	ENSGT00940000163243.e
River trout	MODERN SPECIES	32	ENSSTUG00000030697	ENSSTUG00000030707	PTGFRN (ENSSTUG00000030732)	slc5a3a (ENSSTUG00000030745)	GPR180 (ENSSTUG00000030880)	TGDS (ENSSTUG00000030908)	ddx3xa (ENSSTUG00000031022)	usp9 (ENSSTUG00000037972)	ENSSTUG00000044268	dleu7 (ENSSTUG00000044380)	KCNRG (ENSSTUG00000044408)	kpna3 (ENSSTUG00000044425) #30	ebpl (ENSSTUG00000044760) #29	rcbtb1 (ENSSTUG00000044772) #27	arl11 (ENSSTUG00000044979)	cdadc1 (ENSSTUG00000044992) #22	cab39l (ENSSTUG00000045018) #23	ENSSTUG00000045116	tubgcp3 (ENSSTUG00000045146)	ATP11A (ENSSTUG00000045283)	sox1b (ENSSTUG00000046415)	ARHGEF7 (ENSSTUG00000046486)	ENSSTUG00000047795	tsga10 (ENSSTUG00000047918)	ENSSTUG00000047938	ENSSTUG00000047943	unc50 (ENSSTUG00000047952)	ENSSTUG00000047983	inpp4ab (ENSSTUG00000048010)	ENSSTUG00000048288	pou3f3b (ENSSTUG00000048292)
Atlantic salmon	MODERN SPECIES	8	ENSSSAG00000099420	ENSSSAG00000068973	ENSSSAG00000085505	ENSSSAG00000079285	PTGFRN (ENSSSAG00000073103)	slc5a3a (ENSSSAG00000122098)	ENSSSAG00000119794	ENSSSAG00000109921	ENSSSAG00000073268	ENSSSAG00000069234	ENSSSAG00000077498	ENSSSAG00000106472	kpna3 (ENSSSAG00000080845) #30	arl11 (ENSSSAG00000100002)	rcbtb1 (ENSSSAG00000056005) #27	cdadc1 (ENSSSAG00000006006) #22	cab39l (ENSSSAG00000077705) #23	ENSSSAG00000077786	tubgcp3 (ENSSSAG00000078807)	ENSSSAG00000078974	sox1b (ENSSSAG00000028805)	arhgef7b (ENSSSAG00000045555)	ENSSSAG00000053976	LIPB (ENSSSAG00000053997)	ENSSSAG00000113836	ENSSSAG00000083176	ENSSSAG00000054862	ENSSSAG00000054854	inpp4ab (ENSSSAG00000054024)	tm182 (ENSSSAG00000030984)	pou3f3b (ENSSSAG00000101862)
Oncorhynchus	DUPLICATION
Oncorhynchus	ANCESTRAL SPECIES	74	ENSGT00940000153981.A.e	ENSGT00940000159196.j.a.b	ENSGT00940000154443.e.c.b.a	ENSGT00940000155375.n.c	ENSGT00940000162114.f.a	ENSGT00940000171515.e	ENSGT00940000161898.d	ENSGT01050000244891.C.c.b.p.a.b #30	ENSGT00530000063715.b.h #29	ENSGT00940000166383.c.a	ENSGT00940000155814.m.c #27	ENSGT01050000244891.C.c.b.p.a.a #30	ENSGT00530000063715.b.g #29	ENSGT00940000166383.c.b	ENSGT00940000155814.m.d #27	ENSGT00940000153676.b.m #22	ENSGT00390000004360.a.b.a.a.b.a.b #23	ENSGT00940000157874.q.a.c.a.a	ENSGT00940000157872.i	ENSGT00940000157849.n.c.f	ENSGT00940000155360.B.k.d	ENSGT00940000157849.n.c.e	ENSGT00990000211402	ENSGT00940000162479.b.i.b	ENSGT00940000155360.B.k.c	ENSGT00940000163243.f	ENSGT00390000008846.a.d	ENSGT00940000159205.fb.b	ENSGT00390000008846.a.c	ENSGT00940000159205.fb.a.b	ENSGT00940000163031.b.a.a.f
Oncorhynchus_a	ANCESTRAL SPECIES	92	ENSGT00990000204406	ENSGT00970000194096.a.d	ENSGT00940000158367.g	ENSGT00940000161679.b.c.d	ENSGT00940000153981.A.e	ENSGT00940000159196.j.a.a	ENSGT00940000154443.e.c.b.b	ENSGT00940000155375.n.d	ENSGT00940000162114.e	ENSGT00940000171515.f	ENSGT00940000161898.c	ENSGT01050000244891.C.c.b.p.a.a #30	ENSGT00530000063715.b.g #29	ENSGT00940000166383.c.b	ENSGT00940000155814.m.d #27	ENSGT00940000153676.b.m #22	ENSGT00390000004360.a.b.a.a.b.a.b #23	ENSGT00940000157874.q.a.c.a.a	ENSGT00940000162479.b.i.b.a	ENSGT00940000155360.B.k.c	ENSGT00940000157872.i	ENSGT00940000157849.n.c.f	ENSGT00940000155360.B.k.d	ENSGT00940000163243.f	ENSGT00390000008846.a.d	ENSGT00940000159205.fb.b	ENSGT00940000159205.fb.a.a	ENSGT00940000163031.b.a.a.f	ENSGT00390000018553.e.b	ENSGT00940000164275.f.f	ENSGT00940000157360.c.j.b.a
Chinook salmon	MODERN SPECIES	116																cdadc1 (ENSOTSG00005024560) #22	cab39l (ENSOTSG00005024562) #23	MCF2L (ENSOTSG00005024563)	tubgcp3 (ENSOTSG00005024565)	ENSOTSG00005024615	sox1b (ENSOTSG00005024616)	arhgef7b (ENSOTSG00005024624)	ENSOTSG00005029598	lipt1 (ENSOTSG00005029599)	tsga10 (ENSOTSG00005029600)	ENSOTSG00005029602	unc50 (ENSOTSG00005029604)	ENSOTSG00005029609
Coho salmon	MODERN SPECIES	25	ENSOKIG00005008917	ENSOKIG00005014037	ENSOKIG00005014059	ENSOKIG00005014076	slc5a3a (ENSOKIG00005014102)	GPR180 (ENSOKIG00005014115)	TGDS (ENSOKIG00005014267)	ENSOKIG00005014299	ENSOKIG00005014550	ENSOKIG00005014853	KCNRG (ENSOKIG00005014921)	kpna3 (ENSOKIG00005014988) #30	ebpl (ENSOKIG00005016008) #29	arl11 (ENSOKIG00005016014)	rcbtb1 (ENSOKIG00005016063) #27	cdadc1 (ENSOKIG00005016236) #22	cab39l (ENSOKIG00005016247) #23	MCF2L (ENSOKIG00005016350)	tubgcp3 (ENSOKIG00005017748)	ATP11A (ENSOKIG00005017874)	arhgef7b (ENSOKIG00005018087)	ENSOKIG00005018911	lipt1 (ENSOKIG00005019106)	tsga10 (ENSOKIG00005019118)	ENSOKIG00005019152	unc50 (ENSOKIG00005019172)	inpp4ab (ENSOKIG00005019209)	ENSOKIG00005019508	ENSOKIG00005019513	ENSOKIG00005019520	ENSOKIG00005019544
Rainbow trout	MODERN SPECIES	9	ENSOMYG00000009898	ENSOMYG00000009922	slc5a3a (ENSOMYG00000009933)	ENSOMYG00000009973	ENSOMYG00000010050	ENSOMYG00000066791	ENSOMYG00000011039	ENSOMYG00000018232	ENSOMYG00000018572	dleu7 (ENSOMYG00000018629)	ENSOMYG00000018791	kpna3 (ENSOMYG00000018683) #30	ebpl (ENSOMYG00000018854) #29	arl11 (ENSOMYG00000018860)	rcbtb1 (ENSOMYG00000018880) #27	cdadc1 (ENSOMYG00000019003) #22	cab39l (ENSOMYG00000018807) #23	ENSOMYG00000019219	ENSOMYG00000077286	tubgcp3 (ENSOMYG00000019677)	ENSOMYG00000019988	ENSOMYG00000049268	sox1b (ENSOMYG00000021249)	arhgef7b (ENSOMYG00000021518)	ENSOMYG00000022188	lipt1 (ENSOMYG00000022239)	ENSOMYG00000022246	ENSOMYG00000022260	ENSOMYG00000059228	ENSOMYG00000019074	ENSOMYG00000019107
Oncorhynchus	ANCESTRAL SPECIES	313																ENSGT00940000153676.b.n #22	ENSGT00390000004360.a.b.a.a.b.a.a #23	ENSGT00940000157874.q.a.c.b
Oncorhynchus_a	ANCESTRAL SPECIES	193						ENSGT00940000159196.j.a.b	ENSGT00940000154443.e.c.b.a	ENSGT00940000155375.n.c	ENSGT00940000162114.f.a	ENSGT00940000171515.e	ENSGT00940000161898.d	ENSGT01050000244891.C.c.b.p.a.b #30	ENSGT00530000063715.b.h #29	ENSGT00940000166383.c.a	ENSGT00940000155814.m.c #27	ENSGT00940000153676.b.n #22	ENSGT00390000004360.a.b.a.a.b.a.a #23	ENSGT00940000157874.q.a.c.a.b
Chinook salmon	MODERN SPECIES	31	ENSOTSG00005024133	ENSOTSG00005024132	ENSOTSG00005024131	ENSOTSG00005024130	ENSOTSG00005024128	slc5a3a (ENSOTSG00005024008)	ENSOTSG00005023807	ENSOTSG00005023805	ddx3xa (ENSOTSG00005022849)	usp9 (ENSOTSG00005018018)	ENSOTSG00005017976	ENSOTSG00005017975	KCNRG (ENSOTSG00005017968)	kpna3 (ENSOTSG00005017759) #30	rcbtb1 (ENSOTSG00005017729) #27	cdadc1 (ENSOTSG00005017727) #22	cab39l (ENSOTSG00005017677) #23	tubgcp3 (ENSOTSG00005017670)	kdm6al (ENSOTSG00005013700)	ENSOTSG00005013695	ENSOTSG00005013694	ENSOTSG00005013656	ENSOTSG00005007425	ENSOTSG00005003425	ENSOTSG00005003393	ENSOTSG00005003389	ENSOTSG00005003385	cybb (ENSOTSG00005003381)	ENSOTSG00005003376	ENSOTSG00005003370	tspan7b (ENSOTSG00005003367)
Huchen	MODERN SPECIES	1602							slc5a3a (ENSHHUG00000035868)	GPR180 (ENSHHUG00000035874)	TGDS (ENSHHUG00000035880)	ddx3xa (ENSHHUG00000035949)	usp9 (ENSHHUG00000037621)	ENSHHUG00000037697	KCNRG (ENSHHUG00000037706)	kpna3 (ENSHHUG00000037720) #30	rcbtb1 (ENSHHUG00000038000) #27	cdadc1 (ENSHHUG00000038059) #22	cab39l (ENSHHUG00000038064) #23	MCF2L (ENSHHUG00000038132)	tubgcp3 (ENSHHUG00000038435)	ENSHHUG00000038544	ENSHHUG00000038562
Northern pike	MODERN SPECIES	21	ENSELUG00000004230	ENSELUG00000004351	ENSELUG00000004373	ENSELUG00000004437	slc5a3a (ENSELUG00000004466)	GPR180 (ENSELUG00000004484)	TGDS (ENSELUG00000004517)	ddx3xa (ENSELUG00000004613)	usp9 (ENSELUG00000004816)	ENSELUG00000001490	kpna3 (ENSELUG00000004957) #30	ATP1A1 (ENSELUG00000032711)	ebpl (ENSELUG00000005023) #29	arl11 (ENSELUG00000000140)	rcbtb1 (ENSELUG00000005067) #27	cdadc1 (ENSELUG00000005120) #22	cab39l (ENSELUG00000005160) #23	MCF2L (ENSELUG00000005447)	tubgcp3 (ENSELUG00000005567)	sox1b (ENSELUG00000005792)	ATP11A (ENSELUG00000005738)	arhgef7b (ENSELUG00000005907)	ENSELUG00000001132	lipt1 (ENSELUG00000005979)	tsga10 (ENSELUG00000006038)	ENSELUG00000006099	unc50 (ENSELUG00000033269)	inpp4ab (ENSELUG00000006294)	ENSELUG00000006350	pou3f3b (ENSELUG00000006369)	mrps9 (ENSELUG00000006431)
Acanthomorphata	ANCESTRAL SPECIES	367															ENSGT00940000155814.m #27	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000157874.q.a	ENSGT00390000003152
Euacanthomorphacea	ANCESTRAL SPECIES	120						ENSGT00940000153514.b.m.b	ENSGT00390000018553	ENSGT00940000164275.f	ENSGT00940000157269.a.b	ENSGT00940000155360.B.k	ENSGT00940000162479.a	ENSGT00940000157849.n.c	ENSGT00940000157872	ENSGT00940000156984.a.a	ENSGT00940000155814.m #27	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000157874.q.a	ENSGT00390000003152	ENSGT01030000234513.B.b.d	ENSGT01050000244864.B.b.a.a
Percomorphaceae	ANCESTRAL SPECIES	95	ENSGT00390000007055	ENSGT00940000154348.c.b.a.b.b	ENSGT00940000159848	ENSGT00940000166946	ENSGT00940000153514.b.m.b	ENSGT00390000018553	ENSGT00940000164275.f.c	ENSGT00940000164275.f.d	ENSGT00940000157269.a.b	ENSGT00940000155360.B.k	ENSGT00940000162479.a	ENSGT00940000157849.n.c	ENSGT00940000157872	ENSGT00940000156984.a.a	ENSGT00940000155814.m #27	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000157874.q.a
Tiger tail seahorse	MODERN SPECIES	275	atg13 (ENSHCOG00000008662)	creb3l1 (ENSHCOG00000008669)	zgc:110699 (ENSHCOG00000008681)	ndufs1 (ENSHCOG00000008721)	unc50 (ENSHCOG00000008739)	ENSHCOG00000008746	ENSHCOG00000008753	ENSHCOG00000008878	ENSHCOG00000008925	SOX1 (ENSHCOG00000008937)	ATP11A (ENSHCOG00000009108)	tubgcp3 (ENSHCOG00000009182)	ENSHCOG00000009194	ENSHCOG00000009214	rcbtb1 (ENSHCOG00000009243) #27	cdadc1 (ENSHCOG00000009258) #22	cab39l (ENSHCOG00000009280) #23	MCF2L (ENSHCOG00000009356)	ENSHCOG00000009403	ARHGEF7 (ENSHCOG00000009454)	ENSHCOG00000009568	MAP4K4 (ENSHCOG00000009697)	chst10 (ENSHCOG00000009716)	chst10 (ENSHCOG00000009726)	rpl31 (ENSHCOG00000009739)	ENSHCOG00000009742	cpb2 (ENSHCOG00000000303)	alg11 (ENSHCOG00000009773)	raph1b (ENSHCOG00000009809)	ENSHCOG00000009834	ENSHCOG00000009853
Percomorphaceae_B	ANCESTRAL SPECIES	22	ENSGT00390000007055	ENSGT00940000154348.c.b.a.b.b	ENSGT00940000159848	ENSGT00940000166946	ENSGT00940000153514.b.m.b	ENSGT00390000018553	ENSGT00940000164275.f.c	ENSGT00940000164275.f.d	ENSGT00940000157269.a.b	ENSGT00940000155360.B.k	ENSGT00940000162479.a	ENSGT00940000157849.n.c	ENSGT00940000157872	ENSGT00940000156984.a.a	ENSGT00940000155814.m #27	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000157874.q.a	ENSGT01090000260082.d.a.b.o.a	ENSGT00940000155107.b.a	ENSGT00940000155063.a.b	ENSGT00940000157128	ENSGT00950000183030	ENSGT00730000111163	ENSGT00940000165996	ENSGT01030000235083	ENSGT00940000159160	ENSGT00550000075118.k	ENSGT00390000009001	ENSGT00940000156552.c.b	ENSGT00990000203779
Ovalentaria	ANCESTRAL SPECIES	23	ENSGT00940000155502	ENSGT00390000007055	ENSGT00940000154348.c.b.a.b.b	ENSGT00940000159848	ENSGT00940000166946	ENSGT00940000153514.b.m.b	ENSGT00390000018553	ENSGT00940000164275.f.d	ENSGT00940000157269.a.b	ENSGT00940000155360.B.k	ENSGT00940000162479.a	ENSGT00940000157849.n.c	ENSGT00940000157872	ENSGT00940000156984.a.a	ENSGT00940000155814.m #27	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000157874.q.a	ENSGT01090000260082.d.a.b.o.a	ENSGT00940000155107.b.a	ENSGT00940000155063.a.b	ENSGT00940000157128	ENSGT00950000183030	ENSGT00730000111163	ENSGT00940000165996	ENSGT01030000235083	ENSGT00940000159160	ENSGT00550000075118.k	ENSGT00390000009001	ENSGT00940000156552.c.b	ENSGT00990000203779
Atherinomorphae	ANCESTRAL SPECIES	24	ENSGT00940000155502	ENSGT00390000007055	ENSGT00940000154348.c.b.a.b.b	ENSGT00940000159848	ENSGT00940000166946	ENSGT00940000153514.b.m.b	ENSGT00390000018553	ENSGT00940000164275.f.d	ENSGT00940000157269.a.b	ENSGT00940000155360.B.k	ENSGT00940000162479.a	ENSGT00940000157849.n.c	ENSGT00940000157872	ENSGT00940000156984.a.a	ENSGT00940000155814.m #27	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000157874.q.a	ENSGT01090000260082.d.a.b.o.a	ENSGT00940000155107.b.a	ENSGT00940000155063.a.b	ENSGT00940000157128	ENSGT00950000183030	ENSGT00730000111163	ENSGT00940000165996	ENSGT01030000235083	ENSGT00940000159160	ENSGT00550000075118.k	ENSGT00940000156552.c.b	ENSGT00990000203779	ENSGT01030000234607.A.b
Oryzias	ANCESTRAL SPECIES	26	ENSGT00940000155502	ENSGT00390000007055	ENSGT00940000154348.c.b.a.b.b	ENSGT00940000159848	ENSGT00940000166946	ENSGT00940000153514.b.m.b	ENSGT00390000018553	ENSGT00940000164275.f.d	ENSGT00940000157269.a.b	ENSGT00940000155360.B.k	ENSGT00940000162479.a	ENSGT00940000157849.n.c	ENSGT00940000157872	ENSGT00940000156984.a.a	ENSGT00940000155814.m #27	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000157874.q.a	ENSGT01090000260082.d.a.b.o.a	ENSGT00940000156271	ENSGT00940000160594.g.b	ENSGT00950000182897.B.a.b.b.b	ENSGT01030000234567.B.a.a.b.a.b	ENSGT00950000183214.a.b.a.b.f.b.b	ENSGT00940000155270.i.b	ENSGT00940000156160.b.a	ENSGT00390000000862	ENSGT00950000183019.f.b.b.d	ENSGT00940000164110	ENSGT00530000063410.b	ENSGT01030000234607.A.b
Oryzias_b	ANCESTRAL SPECIES	76												ENSGT00940000157849.n.c	ENSGT00940000157872	ENSGT00940000156984.a.a	ENSGT00940000155814.m #27	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000157874.q.a	ENSGT01090000260082.d.a.b.o.a	ENSGT00940000156271	ENSGT00940000160594.g.b	ENSGT00950000182897.B.a.b.b.b	ENSGT01030000234567.B.a.a.b.a.b	ENSGT00950000183214.a.b.a.b.f.b.b	ENSGT00940000155270.i.b	ENSGT00940000156160.b.a	ENSGT00390000000862	ENSGT00950000183019.f.b.b.d	ENSGT00940000164110	ENSGT00530000063410.b	ENSGT01030000234607.A.b
Javanese ricefish	MODERN SPECIES	11	ENSOJAG00000015130	ENSOJAG00000014906	ENSOJAG00000014858	ENSOJAG00000014842	ENSOJAG00000014830	ENSOJAG00000014810	ENSOJAG00000014789	ENSOJAG00000014783	ENSOJAG00000014771	tubgcp3 (ENSOJAG00000011847)	FGF14 (ENSOJAG00000011821)	ENSOJAG00000011800	ENSOJAG00000011745	ENSOJAG00000011730	rcbtb1 (ENSOJAG00000011586) #27	cdadc1 (ENSOJAG00000011573) #22	cab39l (ENSOJAG00000011564) #23	MCF2L (ENSOJAG00000009688)	ENSOJAG00000008325	mrpl39 (ENSOJAG00000008285)	ENSOJAG00000008271	mbnl2 (ENSOJAG00000008159)	ENSOJAG00000008127	ENSOJAG00000008098	ENSOJAG00000008044	ENSOJAG00000008014	nrp2a (ENSOJAG00000005308)	cnppd1 (ENSOJAG00000004998)	ENSOJAG00000004832	retreg2 (ENSOJAG00000004813)	mdh1b (ENSOJAG00000004804)
Indian medaka	MODERN SPECIES	24	ENSOMEG00000000226	ENSOMEG00000000829	WHRN (ENSOMEG00000009151)	stxbp1b (ENSOMEG00000009138)	ABCA2 (ENSOMEG00000009062)	FUT7 (ENSOMEG00000008898)	ENSOMEG00000008890	niban2b (ENSOMEG00000008877)	FHIP2B (ENSOMEG00000008805)	dnm1b (ENSOMEG00000008742)	ENSOMEG00000008681	ATP11A (ENSOMEG00000008640)	tubgcp3 (ENSOMEG00000008513)	FGF14 (ENSOMEG00000008408)	rcbtb1 (ENSOMEG00000008349) #27	cdadc1 (ENSOMEG00000008283) #22	cab39l (ENSOMEG00000008249) #23	MCF2L (ENSOMEG00000008166)	ENSOMEG00000007964	ENSOMEG00000007881	rap2ab (ENSOMEG00000007869)	mbnl2 (ENSOMEG00000007821)	ENSOMEG00000007712	ENSOMEG00000007702	ENSOMEG00000007632	ENSOMEG00000007428	nrp2a (ENSOMEG00000007409)	abcb6a (ENSOMEG00000007360)	cnppd1 (ENSOMEG00000007313)	ENSOMEG00000007283	retreg2 (ENSOMEG00000007242)
Oryzias_a	ANCESTRAL SPECIES	28	ENSGT00530000063970.f.db.a	ENSGT00940000155502	ENSGT00390000007055	ENSGT00940000159848	ENSGT00940000166946	ENSGT00940000153514.b.m.b	ENSGT00390000018553	ENSGT00940000164275.f.d	ENSGT00940000157269.a.b	ENSGT00940000155360.B.k	ENSGT00940000162479.a	ENSGT00940000157849.n.c	ENSGT00940000157872	ENSGT00940000156984.a.a	ENSGT00940000155814.m #27	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000157874.q.a	ENSGT01090000260082.d.a.b.o.a	ENSGT00940000156271	ENSGT00940000160594.g.b	ENSGT00950000182897.B.a.b.b.b	ENSGT01030000234567.B.a.a.b.a.b	ENSGT00950000183214.a.b.a.b.f.b.b	ENSGT00940000155270.i.b	ENSGT00940000156160.b.a	ENSGT00390000000862	ENSGT00950000183019.f.b.b.d	ENSGT00940000164110	ENSGT00530000063410.b	ENSGT01030000234607.A.b
Japanese Medaka HdrR	MODERN SPECIES	11	kpnb3 (ENSORLG00000006133)	atg13 (ENSORLG00000006065)	creb3l1 (ENSORLG00000006015)	zgc:110699 (ENSORLG00000006012)	NDUFS1 (ENSORLG00000006003)	unc50 (ENSORLG00000005956)	ENSORLG00000023138	ENSORLG00000005884	arhgef7b (ENSORLG00000005832)	ENSORLG00000027672	ATP11A (ENSORLG00000005793)	tubgcp3 (ENSORLG00000005732)	ENSORLG00000025057	ENSORLG00000025753	rcbtb1 (ENSORLG00000005672) #27	cdadc1 (ENSORLG00000005666) #22	cab39l (ENSORLG00000005654) #23	ENSORLG00000005630	ENSORLG00000005481	mrpl39 (ENSORLG00000005447)	rap2ab (ENSORLG00000005426)	mbnl2 (ENSORLG00000005419)	ENSORLG00000005414	ENSORLG00000025601	nrp2a (ENSORLG00000005395)	abcb6a (ENSORLG00000005333)	cnppd1 (ENSORLG00000005312)	ENSORLG00000005307	retreg2 (ENSORLG00000005285)	mdh1b (ENSORLG00000005272)	ENSORLG00000005262
Chinese medaka	MODERN SPECIES	23		zgc:172122 (ENSOSIG00000011797)	ENSOSIG00000011803	kpnb3 (ENSOSIG00000011804)	atg13 (ENSOSIG00000011810)	creb3l1 (ENSOSIG00000011813)	ndufs1 (ENSOSIG00000011814)	unc50 (ENSOSIG00000012150)	ENSOSIG00000012151	ENSOSIG00000012152	arhgef7b (ENSOSIG00000012154)	ATP11A (ENSOSIG00000012166)	tubgcp3 (ENSOSIG00000013177)	ENSOSIG00000013183	rcbtb1 (ENSOSIG00000013184) #27	cdadc1 (ENSOSIG00000013188) #22	cab39l (ENSOSIG00000013191) #23	MCF2L (ENSOSIG00000013196)	ENSOSIG00000013224	mrpl39 (ENSOSIG00000013673)	rap2ab (ENSOSIG00000013675)	mbnl2 (ENSOSIG00000013683)	ENSOSIG00000013793	nrp2a (ENSOSIG00000013827)	abcb6a (ENSOSIG00000000003)	cnppd1 (ENSOSIG00000000013)	retreg2 (ENSOSIG00000000032)	ENSOSIG00000000045	ENSOSIG00000000052	raph1b (ENSOSIG00000000169)	alg11 (ENSOSIG00000000590)
Cyprinodontiformes	ANCESTRAL SPECIES	25	ENSGT00940000155502	ENSGT00390000007055	ENSGT00940000154348.c.b.a.b.b	ENSGT00940000159848	ENSGT00940000166946	ENSGT00940000153514.b.m.b	ENSGT00390000018553	ENSGT00940000164275.f.d	ENSGT00940000157269.a.b	ENSGT00940000155360.B.k	ENSGT00940000162479.a	ENSGT00940000157849.n.c	ENSGT00940000157872	ENSGT00940000156984.a.a	ENSGT00940000155814.m #27	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000157874.q.a	ENSGT01090000260082.d.a.b.o.a	ENSGT00940000155107.b.a	ENSGT00940000155063.a.b	ENSGT00940000157128	ENSGT00950000183030	ENSGT00730000111163	ENSGT00940000159160	ENSGT00550000075118.k	ENSGT00940000156552.c.b	ENSGT00990000203779	ENSGT01030000234607.A.b	ENSGT00530000063410.b	ENSGT00940000164110
Aplocheiloidei	ANCESTRAL SPECIES	37	ENSGT00940000156712.a	ENSGT00940000155502	ENSGT00390000007055	ENSGT00940000154348.c.b.a.b.b	ENSGT00940000159848	ENSGT00940000153514.b.m.b	ENSGT00390000018553	ENSGT00940000164275.f.d	ENSGT00940000157269.a.b	ENSGT00940000155360.B.k	ENSGT00940000162479.a	ENSGT00940000157849.n.c	ENSGT00940000157872	ENSGT00940000156984.a.a	ENSGT00940000155814.m #27	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000157874.q.a	ENSGT01090000260082.d.a.b.o.a	ENSGT00940000155107.b.a	ENSGT00940000155063.a.b	ENSGT00940000157128	ENSGT00730000111163	ENSGT00950000183030	ENSGT00940000159160	ENSGT00550000075118.k	ENSGT00940000156552.c.b	ENSGT00990000203779	ENSGT01030000234607.A.b	ENSGT00530000063410.b	ENSGT00940000164110
Mangrove rivulus	MODERN SPECIES	132	ENSKMAG00000010470	ENSKMAG00000010505	cnot9 (ENSKMAG00000010565)	ENSKMAG00000010629	ENSKMAG00000010672	zc3h13 (ENSKMAG00000010701)	ENSKMAG00000010754	ENSKMAG00000010829	arhgef7b (ENSKMAG00000010994)	SOX1 (ENSKMAG00000011088)	ATP11A (ENSKMAG00000011106)	ENSKMAG00000011159	tubgcp3 (ENSKMAG00000011185)	FGF14 (ENSKMAG00000011283)	rcbtb1 (ENSKMAG00000011318) #27	cdadc1 (ENSKMAG00000011381) #22	cab39l (ENSKMAG00000011414) #23	ENSKMAG00000011510	ENSKMAG00000011652	ENSKMAG00000011694	MAP4K4 (ENSKMAG00000011765)	chst10 (ENSKMAG00000011926)	ENSKMAG00000011945	rpl31 (ENSKMAG00000011989)	unc50 (ENSKMAG00000012064)	ndufs1 (ENSKMAG00000012091)	creb3l1 (ENSKMAG00000012148)	HARBI1 (ENSKMAG00000012173)	atg13 (ENSKMAG00000012194)	kpnb3 (ENSKMAG00000012235)	SEMA5B (ENSKMAG00000012302)
Turquoise killifish	MODERN SPECIES	1615	CACNA2D4 (ENSNFUG00015016367)	ENSNFUG00015016482	Nfu_g_1_014069 (ENSNFUG00015016532)	CAT (ENSNFUG00015017059)	BX005076.1 (ENSNFUG00015017214)	HMG20A (ENSNFUG00015017220)	ENSNFUG00015017224	ENSNFUG00015017227	LINGO1A (ENSNFUG00015017235)	Nfu_g_1_008684 (ENSNFUG00015017237)	ATP11A (ENSNFUG00015017359)	tubgcp3 (ENSNFUG00015020355)	Nfu_g_1_008660 (ENSNFUG00015020483)	ENSNFUG00015020497	rcbtb1 (ENSNFUG00015020504) #27	CDADC1 (ENSNFUG00015020521) #22	cab39l (ENSNFUG00015020524) #23	MCF2L (ENSNFUG00015020529)	ENSNFUG00015020539	ENSNFUG00015020544	ZC3H12C (ENSNFUG00015020892)	MAP4K4 (ENSNFUG00015020909)	chst10 (ENSNFUG00015021219)	ZC3H13 (ENSNFUG00015021222)	cpb2 (ENSNFUG00015021229)	ALG11 (ENSNFUG00015021241)	raph1b (ENSNFUG00015021263)	ENSNFUG00015021828	FASTKD2 (ENSNFUG00015021833)	mdh1b (ENSNFUG00015021836)	FAM134A (ENSNFUG00015021837)
Cyprinodontoidei	ANCESTRAL SPECIES	26	ENSGT00940000155502	ENSGT00390000007055	ENSGT00940000154348.c.b.a.b.b	ENSGT00940000159848	ENSGT00940000166946	ENSGT00940000153514.b.m.b	ENSGT00390000018553	ENSGT00940000164275.f.d	ENSGT00940000157269.a.b	ENSGT00940000155360.B.k	ENSGT00940000162479.a	ENSGT00940000157849.n.c	ENSGT00940000157872	ENSGT00940000156984.a.a	ENSGT00940000155814.m #27	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000157874.q.a	ENSGT01090000260082.d.a.b.o.a	ENSGT00940000155107.b.a	ENSGT00940000155063.a.b	ENSGT00940000157128	ENSGT00950000183030	ENSGT00730000111163	ENSGT00940000159160	ENSGT00550000075118.k	ENSGT00940000156552.c.b	ENSGT00990000203779	ENSGT01030000234607.A.b	ENSGT00530000063410.b	ENSGT00940000164110
NAME_4	ANCESTRAL SPECIES	76	ENSGT00940000155502	ENSGT00390000007055	ENSGT00940000154348.c.b.a.b.b	ENSGT00940000159848	ENSGT00940000166946	ENSGT00940000153514.b.m.b	ENSGT00390000018553	ENSGT00940000164275.f.d	ENSGT00940000157269.a.b	ENSGT00940000155360.B.k	ENSGT00940000162479.a	ENSGT00940000157849.n.c	ENSGT00940000157872	ENSGT00940000156984.a.a	ENSGT00940000155814.m #27	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000157874.q.a	ENSGT01090000260082.d.a.b.o.a	ENSGT00940000155107.b.a	ENSGT00940000155063.a.b	ENSGT00940000157128	ENSGT00950000183030	ENSGT00730000111163	ENSGT00940000159160	ENSGT00550000075118.k	ENSGT00940000156552.c.b	ENSGT00990000203779	ENSGT01030000234607.A.b	ENSGT00530000063410.b	ENSGT00940000164110
Mummichog	MODERN SPECIES	980	kpnb3 (ENSFHEG00000023049)	atg13 (ENSFHEG00000022890)	HARBI1 (ENSFHEG00000022776)	creb3l1 (ENSFHEG00000022751)	zgc:110699 (ENSFHEG00000022741)	ndufs1 (ENSFHEG00000022721)	unc50 (ENSFHEG00000022689)	ENSFHEG00000022674	ENSFHEG00000022659	arhgef7b (ENSFHEG00000022472)	SOX1 (ENSFHEG00000022335)	ATP11A (ENSFHEG00000022327)	tubgcp3 (ENSFHEG00000022234)	FGF14 (ENSFHEG00000022154)	rcbtb1 (ENSFHEG00000000545) #27	cdadc1 (ENSFHEG00000022087) #22	cab39l (ENSFHEG00000022080) #23	ENSFHEG00000021973	ENSFHEG00000021320	RDX (ENSFHEG00000021311)	ENSFHEG00000021225	MAP4K4 (ENSFHEG00000021093)	chst10 (ENSFHEG00000020855)	rpl31 (ENSFHEG00000020810)	ENSFHEG00000020795	ENSFHEG00000020784	cpb2 (ENSFHEG00000020769)	alg11 (ENSFHEG00000020747)	raph1b (ENSFHEG00000020732)	ENSFHEG00000020630	ENSFHEG00000020606
Sheepshead minnow	MODERN SPECIES	1142														FGF14 (ENSCVAG00000022572)	rcbtb1 (ENSCVAG00000022601) #27	cdadc1 (ENSCVAG00000000580) #22	cab39l (ENSCVAG00000022626) #23	MCF2L (ENSCVAG00000022857)
Poeciliinae	ANCESTRAL SPECIES	23	ENSGT00940000155502	ENSGT00390000007055	ENSGT00940000154348.c.b.a.b.b	ENSGT00940000159848	ENSGT00940000166946	ENSGT00940000153514.b.m.b	ENSGT00390000018553	ENSGT00940000164275.f.d	ENSGT00940000157269.a.b	ENSGT00940000155360.B.k	ENSGT00940000162479.a	ENSGT00940000157849.n.c	ENSGT00940000157872	ENSGT00940000156984.a.a	ENSGT00940000155814.m #27	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000157874.q.a	ENSGT01090000260082.d.a.b.o.a	ENSGT00940000155107.b.a	ENSGT00940000155063.a.b	ENSGT00940000157128	ENSGT00950000183030	ENSGT00730000111163	ENSGT00940000159160	ENSGT00550000075118.k	ENSGT00940000156552.c.b	ENSGT00990000203779	ENSGT01030000234607.A.b	ENSGT00530000063410.b	ENSGT00940000164110
Poecilia	ANCESTRAL SPECIES	30	ENSGT00940000155502	ENSGT00390000007055	ENSGT00940000154348.c.b.a.b.b	ENSGT00940000159848	ENSGT00940000166946	ENSGT00940000153514.b.m.b	ENSGT00390000018553	ENSGT00940000164275.f.d	ENSGT00940000157269.a.b	ENSGT00940000155360.B.k	ENSGT00940000162479.a	ENSGT00940000157849.n.c	ENSGT00940000157872	ENSGT00940000156984.a.a	ENSGT00940000155814.m #27	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000157874.q.a	ENSGT01090000260082.d.a.b.o.a	ENSGT00940000155107.b.a	ENSGT00940000155063.a.b	ENSGT00940000157128	ENSGT00950000183030	ENSGT00730000111163	ENSGT00940000159160	ENSGT00550000075118.k	ENSGT00940000156552.c.b	ENSGT00990000203779	ENSGT01030000234607.A.b	ENSGT00530000063410.b	ENSGT00940000164110
NAME_6	ANCESTRAL SPECIES	58	ENSGT00940000155502	ENSGT00390000007055	ENSGT00940000154348.c.b.a.b.b	ENSGT00940000159848	ENSGT00940000166946	ENSGT00940000153514.b.m.b	ENSGT00390000018553	ENSGT00940000164275.f.d	ENSGT00940000157269.a.b	ENSGT00940000155360.B.k	ENSGT00940000162479.a	ENSGT00940000157849.n.c	ENSGT00940000157872	ENSGT00940000156984.a.a	ENSGT00940000155814.m #27	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000157874.q.a	ENSGT01090000260082.d.a.b.o.a	ENSGT00940000155107.b.a	ENSGT00940000155063.a.b	ENSGT00940000157128	ENSGT00950000183030	ENSGT00730000111163	ENSGT00940000159160	ENSGT00550000075118.k	ENSGT00940000156552.c.b	ENSGT00990000203779	ENSGT01030000234607.A.b	ENSGT00530000063410.b	ENSGT00940000164110
Amazon molly	MODERN SPECIES	424						ndufs1 (ENSPFOG00000009828)	unc50 (ENSPFOG00000009782)	ENSPFOG00000009665	ENSPFOG00000009145	arhgef7b (ENSPFOG00000008784)	SOX1 (ENSPFOG00000008756)	ATP11A (ENSPFOG00000007727)	tubgcp3 (ENSPFOG00000007253)	ENSPFOG00000007177	rcbtb1 (ENSPFOG00000007065) #27	cdadc1 (ENSPFOG00000006959) #22	cab39l (ENSPFOG00000006848) #23	MCF2L (ENSPFOG00000006017)	RDX (ENSPFOG00000005891)	ENSPFOG00000005817	MAP4K4 (ENSPFOG00000005245)	chst10 (ENSPFOG00000005122)	rpl31 (ENSPFOG00000005045)	zc3h13 (ENSPFOG00000005039)	cpb2 (ENSPFOG00000004589)	alg11 (ENSPFOG00000004511)	raph1b (ENSPFOG00000004388)	ENSPFOG00000004383	ENSPFOG00000004234	mdh1b (ENSPFOG00000004105)	retreg2 (ENSPFOG00000003980)
Sailfin molly	MODERN SPECIES	431															rcbtb1 (ENSPLAG00000009299) #27	cdadc1 (ENSPLAG00000009337) #22	cab39l (ENSPLAG00000009362) #23	MCF2L (ENSPLAG00000009785)	RDX (ENSPLAG00000009857)	ENSPLAG00000009867	MAP4K4 (ENSPLAG00000013930)	rpl31 (ENSPLAG00000000326)	chst10 (ENSPLAG00000014083)	zc3h13 (ENSPLAG00000014095)	cpb2 (ENSPLAG00000014129)	alg11 (ENSPLAG00000014143)	raph1b (ENSPLAG00000014205)	ENSPLAG00000014230	ENSPLAG00000014235	mdh1b (ENSPLAG00000014290)	retreg2 (ENSPLAG00000014309)
Guppy	MODERN SPECIES	450	atg13 (ENSPREG00000011716)	ENSPREG00000011695	creb3l1 (ENSPREG00000011677)	zgc:110699 (ENSPREG00000011654)	ndufs1 (ENSPREG00000011596)	ENSPREG00000011576	unc50 (ENSPREG00000011559)	ENSPREG00000011543	arhgef7b (ENSPREG00000011503)	SOX1 (ENSPREG00000011495)	ATP11A (ENSPREG00000011298)	tubgcp3 (ENSPREG00000011155)	FGF14 (ENSPREG00000011119)	ENSPREG00000011113	rcbtb1 (ENSPREG00000011094) #27	cdadc1 (ENSPREG00000011072) #22	cab39l (ENSPREG00000011055) #23	MCF2L (ENSPREG00000010906)	RDX (ENSPREG00000010856)	ENSPREG00000010838	MAP4K4 (ENSPREG00000010791)	chst10 (ENSPREG00000010751)	rpl31 (ENSPREG00000010564)	zc3h13 (ENSPREG00000010526)	cpb2 (ENSPREG00000010459)	alg11 (ENSPREG00000010439)	raph1b (ENSPREG00000010336)	ENSPREG00000010293	ENSPREG00000010256	mdh1b (ENSPREG00000010234)	retreg2 (ENSPREG00000010208)
Platyfish	MODERN SPECIES	16	creb3l1 (ENSXMAG00000004363)	zgc:110699 (ENSXMAG00000004365)	ndufs1 (ENSXMAG00000004367)	unc50 (ENSXMAG00000023458)	ENSXMAG00000025674	ENSXMAG00000004406	arhgef7b (ENSXMAG00000004492)	SOX1 (ENSXMAG00000019447)	ATP11A (ENSXMAG00000012027)	tubgcp3 (ENSXMAG00000026366)	ENSXMAG00000012158	ENSXMAG00000021122	ENSXMAG00000021861	ENSXMAG00000026344	rcbtb1 (ENSXMAG00000013757) #27	cdadc1 (ENSXMAG00000012166) #22	cab39l (ENSXMAG00000017334) #23	MCF2L (ENSXMAG00000012216)	RDX (ENSXMAG00000012314)	ENSXMAG00000027171	MAP4K4 (ENSXMAG00000012364)	chst10 (ENSXMAG00000028772)	rpl31 (ENSXMAG00000012419)	zc3h13 (ENSXMAG00000012423)	cpb2 (ENSXMAG00000012438)	alg11 (ENSXMAG00000012465)	raph1b (ENSXMAG00000012467)	ENSXMAG00000024149	ENSXMAG00000012482	mdh1b (ENSXMAG00000012494)	retreg2 (ENSXMAG00000025935)
Ovalentaria_B	ANCESTRAL SPECIES	22	ENSGT00390000007055	ENSGT00940000154348.c.b.a.b.b	ENSGT00940000159848	ENSGT00940000166946	ENSGT00940000153514.b.m.b	ENSGT00390000018553	ENSGT00940000164275.f.c	ENSGT00940000164275.f.d	ENSGT00940000157269.a.b	ENSGT00940000155360.B.k	ENSGT00940000162479.a	ENSGT00940000157849.n.c	ENSGT00940000157872	ENSGT00940000156984.a.a	ENSGT00940000155814.m #27	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000157874.q.a	ENSGT01090000260082.d.a.b.o.a	ENSGT00940000155107.b.a	ENSGT00940000155063.a.b	ENSGT00940000157128	ENSGT00950000183030	ENSGT00730000111163	ENSGT00940000159160	ENSGT00550000075118.k	ENSGT00390000009001	ENSGT00940000156552.c.b	ENSGT00990000203779	ENSGT01030000234607.A.b	ENSGT00530000063410.b
Pomacentridae	ANCESTRAL SPECIES	71	ENSGT00940000156712.a	ENSGT00940000155502	ENSGT00390000007055	ENSGT00940000154348.c.b.a.b.b	ENSGT00940000159848	ENSGT00940000166946	ENSGT00940000153514.b.m.b	ENSGT00390000018553	ENSGT00940000157269.a.b	ENSGT00940000155360.B.k	ENSGT00940000162479.a	ENSGT00940000157849.n.c	ENSGT00940000157872	ENSGT00940000156984.a.a	ENSGT00940000155814.m #27	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000157874.q.a	ENSGT01090000260082.d.a.b.o.a.b	ENSGT00940000155107.b.a	ENSGT00940000155063.a.b	ENSGT00940000157128	ENSGT00950000183030	ENSGT00940000155466.e.a	ENSGT00390000016929	ENSGT00940000154342.C.qe	ENSGT00940000154342.C.re	ENSGT00530000063484.b.b.d.b	ENSGT00390000003758	ENSGT00940000153534.A	ENSGT00930000150950.b
Pomacentridae_A	ANCESTRAL SPECIES	101	ENSGT00530000063410.b	ENSGT01030000234607.A.b	ENSGT00990000203779	ENSGT00940000156552.c.b	ENSGT00390000009001	ENSGT00550000075118.k	ENSGT00940000159160	ENSGT00730000111163	ENSGT00940000155360.B.k	ENSGT00940000162479.a	ENSGT00940000157849.n.c	ENSGT00940000157872	ENSGT00940000156984.a.a	ENSGT01090000260059.a.b.b.b.a.c.a.b.d	ENSGT00940000155814.m #27	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000157874.q.a	ENSGT01090000260082.d.a.b.o.a.b	ENSGT00940000155107.b.a
Amphiprion	ANCESTRAL SPECIES	123	ENSGT00530000063410.b	ENSGT01030000234607.A.b	ENSGT00990000203779	ENSGT00940000156552.c.b	ENSGT00390000009001	ENSGT00550000075118.k	ENSGT00940000159160	ENSGT00730000111163	ENSGT00940000155360.B.k	ENSGT00940000162479.a	ENSGT00940000157849.n.c	ENSGT00940000157872	ENSGT00940000156984.a.a	ENSGT01090000260059.a.b.b.b.a.c.a.b.d.b	ENSGT00940000155814.m #27	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000157874.q.a	ENSGT01090000260082.d.a.b.o.a.b	ENSGT00940000155107.b.a
Clown anemonefish	MODERN SPECIES	2639															rcbtb1 (ENSAOCG00000004209) #27	cdadc1 (ENSAOCG00000004184) #22	cab39l (ENSAOCG00000004164) #23	MCF2L (ENSAOCG00000004146)
Orange clownfish	MODERN SPECIES	16	mdh1b (ENSAPEG00000004592)	ENSAPEG00000004691	ENSAPEG00000004708	raph1b (ENSAPEG00000004718)	spp2 (ENSAPEG00000004789)	alg11 (ENSAPEG00000004804)	cpb2 (ENSAPEG00000004843)	zc3h13 (ENSAPEG00000004887)	arhgef7b (ENSAPEG00000004982)	SOX1 (ENSAPEG00000005036)	ATP11A (ENSAPEG00000005069)	tubgcp3 (ENSAPEG00000005196)	ENSAPEG00000005306	ENSAPEG00000005327	rcbtb1 (ENSAPEG00000005344) #27	cdadc1 (ENSAPEG00000005395) #22	cab39l (ENSAPEG00000005485) #23	MCF2L (ENSAPEG00000005516)	ENSAPEG00000005643	ENSAPEG00000005727	abcc4 (ENSAPEG00000005953)	cldn10a (ENSAPEG00000006629)	ENSAPEG00000006701	ENSAPEG00000006755	CLDN10 (ENSAPEG00000006775)	dzip1 (ENSAPEG00000006809)	ENSAPEG00000006827	klhl41b (ENSAPEG00000006845)	ENSAPEG00000006875	atp5f1b (ENSAPEG00000006965)	DHRS9 (ENSAPEG00000007023)
Spiny chromis	MODERN SPECIES	611												tubgcp3 (ENSAPOG00000015810)	FGF14 (ENSAPOG00000015697)	ENSAPOG00000015659	rcbtb1 (ENSAPOG00000015640) #27	cdadc1 (ENSAPOG00000015585) #22	cab39l (ENSAPOG00000015569) #23	MCF2L (ENSAPOG00000015516)	ENSAPOG00000015442	ENSAPOG00000015376	ENSAPOG00000015355
Bicolor damselfish	MODERN SPECIES	456					zgc:110699 (ENSSPAG00000010365)	ENSSPAG00000010352	ndufs1 (ENSSPAG00000010291)	unc50 (ENSSPAG00000010252)	ENSSPAG00000010212	arhgef7b (ENSSPAG00000010140)	SOX1 (ENSSPAG00000010125)	ATP11A (ENSSPAG00000009986)	tubgcp3 (ENSSPAG00000009874)	FGF14 (ENSSPAG00000009847)	rcbtb1 (ENSSPAG00000009819) #27	cdadc1 (ENSSPAG00000009801) #22	cab39l (ENSSPAG00000009771) #23	MCF2L (ENSSPAG00000009584)	RDX (ENSSPAG00000009513)	ENSSPAG00000009485	MAP4K4 (ENSSPAG00000009217)	chst10 (ENSSPAG00000009171)	rpl31 (ENSSPAG00000009164)
Cichlidae	ANCESTRAL SPECIES	30							ENSGT00940000164275.f.d	ENSGT00940000157269.a.b	ENSGT00940000155360.B.k	ENSGT00940000160560.b.f.a.b.a.b	ENSGT00940000162479.a	ENSGT00940000157849.n.c	ENSGT00940000157872	ENSGT00940000156984.a.a	ENSGT00940000155814.m #27	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000157874.q.a	ENSGT01090000260082.d.a.b.o.a	ENSGT00940000155107.b.a	ENSGT00940000155063.a.b	ENSGT00940000157128	ENSGT00950000183030	ENSGT00730000111163	ENSGT00940000159160	ENSGT00550000075118.k	ENSGT00390000009001	ENSGT00940000156552.c.b	ENSGT00990000203779	ENSGT01030000234607.A.b	ENSGT00530000063410.b
Pseudocrenilabrinae	ANCESTRAL SPECIES	25	ENSGT00940000154348.c.b.a.b.b	ENSGT00390000007055	ENSGT00940000155502	ENSGT00940000156712.a	ENSGT00950000182837.b.b.c.b	ENSGT00940000164275.f.d	ENSGT00940000157269.a.b	ENSGT00940000155360.B.k	ENSGT00940000160560.b.f.a.b.a.b.h	ENSGT00940000160560.b.f.a.b.a.b.g.b	ENSGT00940000162479.a	ENSGT00940000157849.n.c	ENSGT00940000157872	ENSGT00940000156984.a.a	ENSGT00940000155814.m #27	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000157874.q.a	ENSGT01090000260082.d.a.b.o.a	ENSGT00940000155107.b.a	ENSGT00940000155063.a.b	ENSGT00940000157128	ENSGT00950000183030	ENSGT00730000111163	ENSGT00940000159160	ENSGT00550000075118.k	ENSGT00390000009001	ENSGT00940000156552.c.b	ENSGT00990000203779	ENSGT01030000234607.A.b	ENSGT00530000063410.b
Nile tilapia	MODERN SPECIES	14	creb3l1 (ENSONIG00000015219)	HARBI1 (ENSONIG00000015216)	atg13 (ENSONIG00000015211)	kpnb3 (ENSONIG00000015196)	SEMA5B (ENSONIG00000015189)	CACNB4 (ENSONIG00000015177)	ENSONIG00000031938	ENSONIG00000015175	arhgef7b (ENSONIG00000015169)	ENSONIG00000013227	SOX1 (ENSONIG00000021020)	ATP11A (ENSONIG00000012309)	tubgcp3 (ENSONIG00000012305)	ENSONIG00000012303	rcbtb1 (ENSONIG00000012298) #27	cdadc1 (ENSONIG00000012296) #22	cab39l (ENSONIG00000012288) #23	MCF2L (ENSONIG00000012277)	ENSONIG00000012273	ENSONIG00000012268	MAP4K4 (ENSONIG00000012256)	chst10 (ENSONIG00000012254)	rpl31 (ENSONIG00000033747)	zc3h13 (ENSONIG00000012236)	cpb2 (ENSONIG00000012227)	alg11 (ENSONIG00000012226)	spp2 (ENSONIG00000039515)	raph1b (ENSONIG00000012220)	ENSONIG00000037064	ENSONIG00000012215	mdh1b (ENSONIG00000012210)
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	29	ENSGT00940000154348.c.b.a.b.b	ENSGT00390000007055	ENSGT00940000155502	ENSGT00940000156712.a	ENSGT00950000182837.b.b.c.b	ENSGT00940000164275.f.d	ENSGT00940000157269.a.b	ENSGT00940000155360.B.k	ENSGT00940000160560.b.f.a.b.a.b.h	ENSGT00940000160560.b.f.a.b.a.b.g.b	ENSGT00940000162479.a	ENSGT00940000157849.n.c	ENSGT00940000157872	ENSGT00940000156984.a.a	ENSGT00940000155814.m #27	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000157874.q.a	ENSGT01090000260082.d.a.b.o.a	ENSGT00940000155107.b.a	ENSGT00940000155063.a.b	ENSGT00940000157128	ENSGT00950000183030	ENSGT00730000111163	ENSGT00940000159160	ENSGT00550000075118.k	ENSGT00390000009001	ENSGT00940000156552.c.b	ENSGT00990000203779	ENSGT01030000234607.A.b	ENSGT00530000063410.b
Haplochromini	ANCESTRAL SPECIES	26	ENSGT00390000007055	ENSGT00940000155502	ENSGT00940000156712.a	ENSGT00950000182837.b.b.c.b	ENSGT00940000164275.f.d.e.b	ENSGT00940000164275.f.d.e.a	ENSGT00940000157269.a.b	ENSGT00940000155360.B.k	ENSGT00940000160560.b.f.a.b.a.b.h	ENSGT00940000160560.b.f.a.b.a.b.g.b	ENSGT00940000162479.a	ENSGT00940000157849.n.c	ENSGT00940000157872	ENSGT00940000156984.a.a	ENSGT00940000155814.m #27	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000157874.q.a	ENSGT01090000260082.d.a.b.o.a	ENSGT00940000155107.b.a	ENSGT00940000155063.a.b	ENSGT00940000157128	ENSGT00950000183030	ENSGT00730000111163	ENSGT00940000159160	ENSGT00550000075118.k	ENSGT00390000009001	ENSGT00940000156552.c.b	ENSGT00990000203779	ENSGT01030000234607.A.b	ENSGT00530000063410.b
Haplochromini_A	ANCESTRAL SPECIES	29	ENSGT00390000007055	ENSGT00940000155502	ENSGT00940000156712.a	ENSGT00950000182837.b.b.c.b	ENSGT00940000164275.f.d.e.b	ENSGT00940000164275.f.d.e.a	ENSGT00940000157269.a.b	ENSGT00940000155360.B.k	ENSGT00940000160560.b.f.a.b.a.b.h	ENSGT00940000160560.b.f.a.b.a.b.g.b	ENSGT00940000162479.a	ENSGT00940000157849.n.c	ENSGT00940000157872	ENSGT00940000156984.a.a	ENSGT00940000155814.m #27	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000157874.q.a	ENSGT01090000260082.d.a.b.o.a	ENSGT00940000155107.b.a	ENSGT00940000155063.a.b	ENSGT00940000157128	ENSGT00950000183030	ENSGT00730000111163	ENSGT00940000159160	ENSGT00550000075118.k	ENSGT00390000009001	ENSGT00940000156552.c.b	ENSGT00990000203779	ENSGT01030000234607.A.b	ENSGT00530000063410.b
Haplochromini_B	ANCESTRAL SPECIES	38	ENSGT00940000159848	ENSGT00940000154348.c.b.a.b.b	ENSGT00390000007055	ENSGT00940000155502	ENSGT00940000156712.a	ENSGT00950000182837.b.b.c.b	ENSGT00940000164275.f.d.e.b	ENSGT00940000164275.f.d.e.a	ENSGT00940000157269.a.b	ENSGT00940000155360.B.k	ENSGT00940000162479.a	ENSGT00940000157849.n.c	ENSGT00940000157872	ENSGT00940000156984.a.a	ENSGT00940000155814.m #27	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000157874.q.a	ENSGT01090000260082.d.a.b.o.a	ENSGT00940000155107.b.a	ENSGT00940000155063.a.b	ENSGT00940000157128	ENSGT00950000183030	ENSGT00730000111163	ENSGT00940000159160.e	ENSGT00550000075118.k	ENSGT00390000009001	ENSGT00940000156552.c.b	ENSGT00990000203779	ENSGT01030000234607.A.b	ENSGT00530000063410.b
Zebra mbuna	MODERN SPECIES	1105	ENSMZEG00005008395	ENSMZEG00005008384	crygs3 (ENSMZEG00005008376)	ENSMZEG00005008361	ENSMZEG00005008344	ENSMZEG00005008329	ENSMZEG00005008301	ENSMZEG00005008283	ENSMZEG00005008263	SOX1 (ENSMZEG00005008255)	ATP11A (ENSMZEG00005008109)	tubgcp3 (ENSMZEG00005008024)	ENSMZEG00005008003	ENSMZEG00005007986	rcbtb1 (ENSMZEG00005007967) #27	cdadc1 (ENSMZEG00005007951) #22	cab39l (ENSMZEG00005007925) #23	MCF2L (ENSMZEG00005007790)	ENSMZEG00005007733	ENSMZEG00005007718	MAP4K4 (ENSMZEG00005007556)	chst10 (ENSMZEG00005007508)	rpl31 (ENSMZEG00005007495)	zc3h13 (ENSMZEG00005007473)	cpb2 (ENSMZEG00005007453)	ENSMZEG00005007444	raph1b (ENSMZEG00005007411)	spp2 (ENSMZEG00005007388)	raph1b (ENSMZEG00005005956)	ENSMZEG00005005871	ENSMZEG00005005856
Eastern happy	MODERN SPECIES	14	unc50 (ENSACLG00000002394)	ndufs1 (ENSACLG00000002346)	zgc:110699 (ENSACLG00000002333)	creb3l1 (ENSACLG00000002322)	HARBI1 (ENSACLG00000002296)	atg13 (ENSACLG00000002212)	kpnb3 (ENSACLG00000002083)	SEMA5B (ENSACLG00000001991)	CACNB4 (ENSACLG00000001924)	ENSACLG00000001848	ENSACLG00000001817	ENSACLG00000001793	arhgef7b (ENSACLG00000001666)	ENSACLG00000001652	ENSACLG00000001609	cdadc1 (ENSACLG00000001587) #22	cab39l (ENSACLG00000001540) #23	MCF2L (ENSACLG00000001155)	ENSACLG00000001047	ENSACLG00000027924	MAP4K4 (ENSACLG00000027913)	chst10 (ENSACLG00000027912)	rpl31 (ENSACLG00000027911)	zc3h13 (ENSACLG00000027909)	cpb2 (ENSACLG00000027901)	alg11 (ENSACLG00000027899)	spp2 (ENSACLG00000027900)	raph1b (ENSACLG00000027897)	ENSACLG00000027896	ENSACLG00000027894	mdh1b (ENSACLG00000027891)
P. nyererei	MODERN SPECIES	335												ATP11A (ENSPNYG00000015407)	tubgcp3 (ENSPNYG00000015478)	ENSPNYG00000015558	rcbtb1 (ENSPNYG00000015578) #27	cdadc1 (ENSPNYG00000015610) #22	cab39l (ENSPNYG00000015625) #23	MCF2L (ENSPNYG00000015707)	ENSPNYG00000015828	ENSPNYG00000015874	MAP4K4 (ENSPNYG00000015893)	chst10 (ENSPNYG00000015962)	rpl31 (ENSPNYG00000015985)	zc3h13 (ENSPNYG00000016000)	cpb2 (ENSPNYG00000016049)	alg11 (ENSPNYG00000016075)	spp2 (ENSPNYG00000016100)	raph1b (ENSPNYG00000016134)	ENSPNYG00000016292	ENSPNYG00000016302	mdh1b (ENSPNYG00000016342)
Burton s mouthbrooder	MODERN SPECIES	303												ATP11A (ENSHBUG00000006502)	tubgcp3 (ENSHBUG00000006619)	ENSHBUG00000006660	rcbtb1 (ENSHBUG00000006708) #27	cdadc1 (ENSHBUG00000006723) #22	cab39l (ENSHBUG00000006743) #23	MCF2L (ENSHBUG00000006771)	ENSHBUG00000006815	ENSHBUG00000006831	MAP4K4 (ENSHBUG00000007019)	chst10 (ENSHBUG00000007072)	rpl31 (ENSHBUG00000007089)	zc3h13 (ENSHBUG00000007100)	cpb2 (ENSHBUG00000007107)	ENSHBUG00000007121	spp2 (ENSHBUG00000007129)	raph1b (ENSHBUG00000007232)	ENSHBUG00000007244	ENSHBUG00000007258	mdh1b (ENSHBUG00000007343)
Lyretail cichlid	MODERN SPECIES	422										ENSNBRG00000006386	ENSNBRG00000006414	ATP11A (ENSNBRG00000006492)	tubgcp3 (ENSNBRG00000006602)	ENSNBRG00000006660	rcbtb1 (ENSNBRG00000006687) #27	cdadc1 (ENSNBRG00000006723) #22	cab39l (ENSNBRG00000006797) #23	MCF2L (ENSNBRG00000006866)	RDX (ENSNBRG00000006927)	ENSNBRG00000006978	ENSNBRG00000006985	ENSNBRG00000007007	chst10 (ENSNBRG00000007049)	rpl31 (ENSNBRG00000007076)	ENSNBRG00000007093	cpb2 (ENSNBRG00000007109)	alg11 (ENSNBRG00000007121)	ENSNBRG00000007138	raph1b (ENSNBRG00000007182)	ENSNBRG00000007222	ENSNBRG00000007232
Midas cichlid	MODERN SPECIES	353																cdadc1 (ENSACIG00000001563) #22	cab39l (ENSACIG00000001525) #23	MCF2L (ENSACIG00000001448)	ENSACIG00000001412	ENSACIG00000001362	MAP4K4 (ENSACIG00000001297)	chst10 (ENSACIG00000001277)	rpl31 (ENSACIG00000001260)	zc3h13 (ENSACIG00000001200)	cpb2 (ENSACIG00000001169)	alg11 (ENSACIG00000001151)	spp2 (ENSACIG00000001105)	raph1b (ENSACIG00000000865)	ENSACIG00000000837	mdh1b (ENSACIG00000000744)	ENSACIG00000000704
Percomorphaceae_C	ANCESTRAL SPECIES	23	ENSGT00390000007055	ENSGT00940000154348.c.b.a.b.b	ENSGT00940000159848	ENSGT00940000166946	ENSGT00940000153514.b.m.b	ENSGT00390000018553	ENSGT00940000164275.f.c	ENSGT00940000164275.f.d	ENSGT00940000157269.a.b	ENSGT00940000155360.B.k	ENSGT00940000162479.a	ENSGT00940000157849.n.c	ENSGT00940000157872	ENSGT00940000156984.a.a	ENSGT00940000155814.m #27	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000157874.q.a	ENSGT01090000260082.d.a.b.o.a	ENSGT00940000155107.b.a	ENSGT00940000155063.a.b	ENSGT00940000157128	ENSGT00950000183030	ENSGT00730000111163	ENSGT00940000165996	ENSGT01030000235083	ENSGT00940000159160	ENSGT00550000075118.k	ENSGT00390000009001	ENSGT00940000156552.c.b	ENSGT00990000203779
Eupercaria	ANCESTRAL SPECIES	23	ENSGT00390000007055	ENSGT00940000154348.c.b.a.b.b	ENSGT00940000159848	ENSGT00940000166946	ENSGT00940000153514.b.m.b	ENSGT00390000018553	ENSGT00940000164275.f.c	ENSGT00940000164275.f.d	ENSGT00940000157269.a.b	ENSGT00940000155360.B.k	ENSGT00940000162479.a	ENSGT00940000157849.n.c	ENSGT00940000157872	ENSGT00940000156984.a.a	ENSGT00940000155814.m #27	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000157874.q.a	ENSGT01090000260082.d.a.b.o.a	ENSGT00940000155107.b.a	ENSGT00940000155063.a.b	ENSGT00940000157128	ENSGT00950000183030	ENSGT00940000165996	ENSGT01030000235083	ENSGT00730000111163	ENSGT00940000159160	ENSGT00550000075118.k	ENSGT00390000009001	ENSGT00940000156552.c.b	ENSGT00990000203779
Tetraodontidae	ANCESTRAL SPECIES	22	ENSGT00940000156984.a.a	ENSGT00940000157872	ENSGT00940000157849.n.c	ENSGT00940000162479.a	ENSGT00940000155360.B.k	ENSGT00940000157269.a.b	ENSGT00940000164275.f.d	ENSGT00940000165242.d	ENSGT00530000063669.b.b	ENSGT00390000002403	ENSGT00950000183302	ENSGT00940000158367	ENSGT00940000161679.b	ENSGT00940000154443.e	ENSGT00940000159196	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000157874.q.a	ENSGT01090000260082.d.a.b.o.a	ENSGT00940000155107.b.a	ENSGT00940000155063.a.b	ENSGT00940000157128	ENSGT00950000183030	ENSGT00730000111163	ENSGT00940000159160	ENSGT00550000075118.k	ENSGT00940000156552.c.b	ENSGT00530000063873.A	ENSGT01030000234607.A.b	ENSGT00530000063410.b	ENSGT00940000164110
Fugu	MODERN SPECIES	20	FGF14 (ENSTRUG00000030093)	tubgcp3 (ENSTRUG00000017326)	atp11a (ENSTRUG00000017330)	SOX1 (ENSTRUG00000021237)	arhgef7b (ENSTRUG00000017333)	ENSTRUG00000017337	ENSTRUG00000028094	ENSTRUG00000017357	ENSTRUG00000017359	fam184aa (ENSTRUG00000017364)	ENSTRUG00000021847	ENSTRUG00000028934	ENSTRUG00000003573	ENSTRUG00000003862	ENSTRUG00000021682	cdadc1 (ENSTRUG00000004808) #22	cab39l (ENSTRUG00000005008) #23	MCF2L (ENSTRUG00000005283)	RDX (ENSTRUG00000005857)	ENSTRUG00000022519	MAP4K4 (ENSTRUG00000006376)	chst10 (ENSTRUG00000007251)	rpl31 (ENSTRUG00000007359)	ENSTRUG00000030462	cpb2 (ENSTRUG00000007671)	alg11 (ENSTRUG00000008200)	raph1b (ENSTRUG00000008306)	cd28 (ENSTRUG00000008513)	ENSTRUG00000019725	mdh1b (ENSTRUG00000008621)	ENSTRUG00000021914
Tetraodon	MODERN SPECIES	18	GPR180 (ENSTNIG00000014502)	ENSTNIG00000014503	ENSTNIG00000014504	tubgcp3 (ENSTNIG00000014505)	ATP11A (ENSTNIG00000014506)	SOX1 (ENSTNIG00000012196)	arhgef7b (ENSTNIG00000014507)	ENSTNIG00000014508	ENSTNIG00000014509	ENSTNIG00000014510	fam184aa (ENSTNIG00000014511)	ENSTNIG00000014512	SLC5A3 (ENSTNIG00000014513)	ENSTNIG00000014514	ENSTNIG00000001981	cdadc1 (ENSTNIG00000014515) #22	cab39l (ENSTNIG00000014516) #23	MCF2L (ENSTNIG00000014517)	RDX (ENSTNIG00000014518)	ENSTNIG00000014519	ENSTNIG00000014520	chst10 (ENSTNIG00000014521)	rpl31 (ENSTNIG00000014522)	zc3h13 (ENSTNIG00000014523)	cpb2 (ENSTNIG00000014524)	alg11 (ENSTNIG00000014525)	raph1b (ENSTNIG00000014526)	ENSTNIG00000014527	mdh1b (ENSTNIG00000000378)	retreg2 (ENSTNIG00000014528)	ENSTNIG00000014529
Eupecaria_A	ANCESTRAL SPECIES	23	ENSGT00390000007055	ENSGT00940000154348.c.b.a.b.b	ENSGT00940000159848	ENSGT00940000166946	ENSGT00940000153514.b.m.b	ENSGT00390000018553	ENSGT00940000164275.f.c	ENSGT00940000164275.f.d	ENSGT00940000157269.a.b	ENSGT00940000155360.B.k	ENSGT00940000162479.a	ENSGT00940000157849.n.c	ENSGT00940000157872	ENSGT00940000156984.a.a	ENSGT00940000155814.m #27	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000157874.q.a	ENSGT01090000260082.d.a.b.o.a	ENSGT00940000155107.b.a	ENSGT00940000155063.a.b	ENSGT00940000157128	ENSGT00950000183030	ENSGT00730000111163	ENSGT00940000165996	ENSGT01030000235083	ENSGT00940000159160	ENSGT00550000075118.k	ENSGT00390000009001	ENSGT00940000156552.c.b	ENSGT00990000203779
Ballan wrasse	MODERN SPECIES	633											SOX1 (ENSLBEG00000020021)	ATP11A (ENSLBEG00000020048)	tubgcp3 (ENSLBEG00000020125)	FGF14 (ENSLBEG00000020198)	rcbtb1 (ENSLBEG00000020250) #27	cdadc1 (ENSLBEG00000020410) #22	cab39l (ENSLBEG00000020443) #23
Eupecaria_B	ANCESTRAL SPECIES	23	ENSGT00390000007055	ENSGT00940000154348.c.b.a.b.b	ENSGT00940000159848	ENSGT00940000166946	ENSGT00940000153514.b.m.b	ENSGT00390000018553	ENSGT00940000164275.f.c	ENSGT00940000164275.f.d	ENSGT00940000157269.a.b	ENSGT00940000155360.B.k	ENSGT00940000162479.a	ENSGT00940000157849.n.c	ENSGT00940000157872	ENSGT00940000156984.a.a	ENSGT00940000155814.m #27	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000157874.q.a	ENSGT01090000260082.d.a.b.o.a	ENSGT00940000155107.b.a	ENSGT00940000155063.a.b	ENSGT00940000157128	ENSGT00950000183030	ENSGT00730000111163	ENSGT00940000165996	ENSGT01030000235083	ENSGT00940000159160	ENSGT00550000075118.k	ENSGT00390000009001	ENSGT00940000156552.c.b	ENSGT00990000203779
Eupecaria_C	ANCESTRAL SPECIES	27	ENSGT00390000007055	ENSGT00940000154348.c.b.a.b.b	ENSGT00940000159848	ENSGT00940000166946	ENSGT00940000153514.b.m.b	ENSGT00390000018553	ENSGT00940000164275.f.c	ENSGT00940000164275.f.d	ENSGT00940000157269.a.b	ENSGT00940000155360.B.k	ENSGT00940000162479.a	ENSGT00940000157849.n.c	ENSGT00940000157872	ENSGT00940000156984.a.a	ENSGT00940000155814.m #27	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000157874.q.a	ENSGT01090000260082.d.a.b.o.a	ENSGT00940000155107.b.a	ENSGT00940000155063.a.b	ENSGT00940000157128	ENSGT00950000183030	ENSGT00730000111163	ENSGT00940000159160	ENSGT00550000075118.k	ENSGT00390000009001	ENSGT00940000156552.c.b	ENSGT00990000203779	ENSGT01030000234607.A.b	ENSGT00530000063410.b
Gilthead seabream	MODERN SPECIES	16	ENSSAUG00010010414	ENSSAUG00010010439	ENSSAUG00010010441	ENSSAUG00010010442	ENSSAUG00010002801	crygm6 (ENSSAUG00010002812)	SATB2 (ENSSAUG00010002841)	ENSSAUG00010002968	ENSSAUG00010005038	arhgef7b (ENSSAUG00010005047)	SOX1 (ENSSAUG00010007362)	ATP11A (ENSSAUG00010007402)	tubgcp3 (ENSSAUG00010010123)	FGF14 (ENSSAUG00010010139)	rcbtb1 (ENSSAUG00010010146) #27	cdadc1 (ENSSAUG00010010438) #22	cab39l (ENSSAUG00010010440) #23	MCF2L (ENSSAUG00010010458)	ENSSAUG00010010686	ENSSAUG00010013896	MAP4K4 (ENSSAUG00010013987)	rpl31 (ENSSAUG00010015646)	zc3h13 (ENSSAUG00010015648)	cpb2 (ENSSAUG00010015649)	alg11 (ENSSAUG00010015656)	spp2 (ENSSAUG00010015659)	raph1b (ENSSAUG00010015668)	ENSSAUG00010015850	ENSSAUG00010015853	mdh1b (ENSSAUG00010015856)	retreg2 (ENSSAUG00010015858)
Perciformes	ANCESTRAL SPECIES	24	ENSGT00390000007055	ENSGT00940000154348.c.b.a.b.b	ENSGT00940000159848	ENSGT00940000166946	ENSGT00940000153514.b.m.b	ENSGT00390000018553	ENSGT00940000164275.f.c	ENSGT00940000164275.f.d	ENSGT00940000157269.a.b	ENSGT00940000155360.B.k	ENSGT00940000162479.a	ENSGT00940000157849.n.c	ENSGT00940000157872	ENSGT00940000156984.a.a	ENSGT00940000155814.m #27	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000157874.q.a	ENSGT01090000260082.d.a.b.o.a	ENSGT00940000155107.b.a	ENSGT00940000155063.a.b	ENSGT00940000157128	ENSGT00950000183030	ENSGT00730000111163	ENSGT00940000165996	ENSGT01030000235083	ENSGT00940000159160	ENSGT00550000075118.k	ENSGT00390000009001	ENSGT00940000156552.c.b	ENSGT00990000203779
Cottioidei	ANCESTRAL SPECIES	24	ENSGT00390000007055	ENSGT00940000154348.c.b.a.b.b	ENSGT00940000159848	ENSGT00940000166946	ENSGT00940000153514.b.m.b	ENSGT00390000018553	ENSGT00940000164275.f.c	ENSGT00940000164275.f.d	ENSGT00940000157269.a.b	ENSGT00940000155360.B.k	ENSGT00940000162479.a	ENSGT00940000157849.n.c	ENSGT00940000157872	ENSGT00940000156984.a.a	ENSGT00940000155814.m #27	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000157874.q.a	ENSGT01090000260082.d.a.b.o.a	ENSGT00940000155107.b.a	ENSGT00940000155063.a.b	ENSGT00940000157128	ENSGT00950000183030	ENSGT00940000165996	ENSGT01030000235083	ENSGT00730000111163	ENSGT00940000159160	ENSGT00550000075118.k	ENSGT00390000009001	ENSGT00940000156552.c.b	ENSGT00990000203779
Lumpfish	MODERN SPECIES	11	mbnl2 (ENSCLMG00005014677)	ENSCLMG00005014689	ENSCLMG00005014691	ENSCLMG00005014693	nrp2a (ENSCLMG00005014713)	abcb6a (ENSCLMG00005015690)	ENSCLMG00005017216	ENSCLMG00005017219	ENSCLMG00005017235	arhgef7b (ENSCLMG00005017440)	SOX1 (ENSCLMG00005019072)	ATP11A (ENSCLMG00005000052)	tubgcp3 (ENSCLMG00005000524)	ENSCLMG00005000536	rcbtb1 (ENSCLMG00005000540) #27	cdadc1 (ENSCLMG00005000549) #22	cab39l (ENSCLMG00005000599) #23	MCF2L (ENSCLMG00005000628)	ENSCLMG00005000777	RDX (ENSCLMG00005000795)	ENSCLMG00005002728	ENSCLMG00005002730	MAP4K4 (ENSCLMG00005002739)	chst10 (ENSCLMG00005004894)	rpl31 (ENSCLMG00005004896)	ENSCLMG00005004902	ENSCLMG00005004904	cpb2 (ENSCLMG00005004907)	alg11 (ENSCLMG00005004939)	spp2 (ENSCLMG00005004942)	raph1b (ENSCLMG00005004947)
Stickleback	MODERN SPECIES		kpnb3 (ENSGACG00000014804)	atg13 (ENSGACG00000014810)	HARBI1 (ENSGACG00000014817)	zgc:110699 (ENSGACG00000014819)	ndufs1 (ENSGACG00000014821)	unc50 (ENSGACG00000014827)	ENSGACG00000014831	ENSGACG00000014833	ENSGACG00000014838	arhgef7b (ENSGACG00000014843)	SOX1 (ENSGACG00000014850)	ATP11A (ENSGACG00000014851)	tubgcp3 (ENSGACG00000014853)	ENSGACG00000014859	rcbtb1 (ENSGACG00000014869) #27	cdadc1 (ENSGACG00000014883) #22	cab39l (ENSGACG00000014886) #23	MCF2L (ENSGACG00000014889)	RDX (ENSGACG00000014895)	ENSGACG00000014898	pspc1 (ENSGACG00000014901)	lypd6 (ENSGACG00000014906)	mmadhca (ENSGACG00000014909)	rnd3a (ENSGACG00000014917)	ENSGACG00000014925	ZRANB3 (ENSGACG00000014926)	ENSGACG00000014931	ccnt2b (ENSGACG00000014932)	TMEM163 (ENSGACG00000014933)	mgat5 (ENSGACG00000014934)	clic5a (ENSGACG00000014937)
Perciformes_a	ANCESTRAL SPECIES	25	ENSGT00390000007055	ENSGT00940000154348.c.b.a.b.b	ENSGT00940000159848	ENSGT00940000166946	ENSGT00940000153514.b.m.b	ENSGT00390000018553	ENSGT00940000164275.f.c	ENSGT00940000164275.f.d	ENSGT00940000157269.a.b	ENSGT00940000155360.B.k	ENSGT00940000162479.a	ENSGT00940000157849.n.c	ENSGT00940000157872	ENSGT00940000156984.a.a	ENSGT00940000155814.m #27	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000157874.q.a	ENSGT01090000260082.d.a.b.o.a	ENSGT00940000155107.b.a	ENSGT00940000155063.a.b	ENSGT00940000157128	ENSGT00950000183030	ENSGT01030000235083	ENSGT00940000159160	ENSGT00550000075118.k	ENSGT00390000009001	ENSGT00940000156552.c.b	ENSGT00990000203779	ENSGT01030000234607.A.b	ENSGT00530000063410.b
Channel bull blenny	MODERN SPECIES	11	zgc:110699 (ENSCGOG00000008944)	ENSCGOG00000008946	ndufs1 (ENSCGOG00000008954)	unc50 (ENSCGOG00000009301)	ENSCGOG00000009315	ENSCGOG00000009326	ENSCGOG00000009342	ENSCGOG00000009350	ENSCGOG00000009396	arhgef7b (ENSCGOG00000009531)	SOX1 (ENSCGOG00000011013)	ATP11A (ENSCGOG00000011033)	tubgcp3 (ENSCGOG00000011368)	FGF14 (ENSCGOG00000011997)	rcbtb1 (ENSCGOG00000012009) #27	cdadc1 (ENSCGOG00000012332) #22	cab39l (ENSCGOG00000012336) #23	MCF2L (ENSCGOG00000012370)	RDX (ENSCGOG00000013573)	ENSCGOG00000017118	ENSCGOG00000017296	chst10 (ENSCGOG00000022724)	rpl31 (ENSCGOG00000022725)	cpb2 (ENSCGOG00000022743)	alg11 (ENSCGOG00000022747)	spp2 (ENSCGOG00000022749)	raph1b (ENSCGOG00000022764)	ENSCGOG00000022937	ENSCGOG00000022938	mdh1b (ENSCGOG00000022940)	retreg2 (ENSCGOG00000022949)
Pike perch	MODERN SPECIES	9	atg13 (ENSSLUG00000018288)	HARBI1 (ENSSLUG00000018331)	zgc:110699 (ENSSLUG00000018339)	ndufs1 (ENSSLUG00000018357)	unc50 (ENSSLUG00000018635)	ENSSLUG00000018647	ENSSLUG00000018666	arhgef7b (ENSSLUG00000018682)	ENSSLUG00000018742	SOX1 (ENSSLUG00000018748)	ENSSLUG00000018752	ATP11A (ENSSLUG00000018831)	tubgcp3 (ENSSLUG00000019071)	ENSSLUG00000019105	rcbtb1 (ENSSLUG00000019117) #27	cdadc1 (ENSSLUG00000019365) #22	cab39l (ENSSLUG00000019371) #23	MCF2L (ENSSLUG00000019427)	ENSSLUG00000020701	ENSSLUG00000021298	MAP4K4 (ENSSLUG00000021448)	chst10 (ENSSLUG00000023251)	rpl31 (ENSSLUG00000023256)	ENSSLUG00000023259	cpb2 (ENSSLUG00000023268)	alg11 (ENSSLUG00000023283)	spp2 (ENSSLUG00000023287)	raph1b (ENSSLUG00000023307)	ENSSLUG00000023414	ENSSLUG00000023416	ENSSLUG00000023420
Percomorphaceae_D	ANCESTRAL SPECIES	23	ENSGT00940000155502	ENSGT00390000007055	ENSGT00940000154348.c.b.a.b.b	ENSGT00940000159848	ENSGT00940000166946	ENSGT00940000153514.b.m.b	ENSGT00390000018553	ENSGT00940000164275.f.d	ENSGT00940000157269.a.b	ENSGT00940000155360.B.k	ENSGT00940000162479.a	ENSGT00940000157849.n.c	ENSGT00940000157872	ENSGT00940000156984.a.a	ENSGT00940000155814.m #27	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000157874.q.a	ENSGT01090000260082.d.a.b.o.a	ENSGT00940000155107.b.a	ENSGT00940000155063.a.b	ENSGT00940000157128	ENSGT00950000183030	ENSGT00940000165996	ENSGT01030000235083	ENSGT00730000111163	ENSGT00940000159160	ENSGT00550000075118.k	ENSGT00390000009001	ENSGT00940000156552.c.b	ENSGT00990000203779
Carangaria	ANCESTRAL SPECIES	23	ENSGT00940000155502	ENSGT00390000007055	ENSGT00940000154348.c.b.a.b.b	ENSGT00940000159848	ENSGT00940000166946	ENSGT00940000153514.b.m.b	ENSGT00390000018553	ENSGT00940000164275.f.d	ENSGT00940000157269.a.b	ENSGT00940000155360.B.k	ENSGT00940000162479.a	ENSGT00940000157849.n.c	ENSGT00940000157872	ENSGT00940000156984.a.a	ENSGT00940000155814.m #27	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000157874.q.a	ENSGT01090000260082.d.a.b.o.a	ENSGT00940000155107.b.a	ENSGT00940000155063.a.b	ENSGT00940000157128	ENSGT00950000183030	ENSGT00940000165996	ENSGT01030000235083	ENSGT00730000111163	ENSGT00940000159160	ENSGT00550000075118.k	ENSGT00390000009001	ENSGT00940000156552.c.b	ENSGT00990000203779
Carangaria_A	ANCESTRAL SPECIES	23	ENSGT00940000155502	ENSGT00390000007055	ENSGT00940000154348.c.b.a.b.b	ENSGT00940000159848	ENSGT00940000166946	ENSGT00940000153514.b.m.b	ENSGT00390000018553	ENSGT00940000164275.f.d	ENSGT00940000157269.a.b	ENSGT00940000155360.B.k	ENSGT00940000162479.a	ENSGT00940000157849.n.c	ENSGT00940000157872	ENSGT00940000156984.a.a	ENSGT00940000155814.m #27	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000157874.q.a	ENSGT01090000260082.d.a.b.o.a	ENSGT00940000155107.b.a	ENSGT00940000155063.a.b	ENSGT00940000157128	ENSGT00950000183030.j	ENSGT00940000165996	ENSGT01030000235083	ENSGT00730000111163	ENSGT00940000159160	ENSGT00550000075118.k	ENSGT00390000009001	ENSGT00940000156552.c.b	ENSGT00990000203779
Seriola	ANCESTRAL SPECIES	44	ENSGT00940000156712.a	ENSGT00940000155502	ENSGT00390000007055	ENSGT00940000159848	ENSGT00940000166946	ENSGT00940000153514.b.m.b	ENSGT00390000018553	ENSGT00940000164275.f.d	ENSGT00940000157269.a.b	ENSGT00940000155360.B.k	ENSGT00940000162479.a	ENSGT00940000157849.n.c	ENSGT00940000157872	ENSGT00940000156984.a.a	ENSGT00940000155814.m #27	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000157874.q.a	ENSGT01090000260082.d.a.b.o.a
Yellowtail amberjack	MODERN SPECIES	3005	SEMA5B (ENSSLDG00000002404)	kpnb3 (ENSSLDG00000002270)	atg13 (ENSSLDG00000002116)	creb3l1 (ENSSLDG00000002002)	zgc:110699 (ENSSLDG00000001933)	ndufs1 (ENSSLDG00000001862)	ENSSLDG00000001831	unc50 (ENSSLDG00000001793)	ENSSLDG00000001651	arhgef7b (ENSSLDG00000001565)	SOX1 (ENSSLDG00000001549)	ATP11A (ENSSLDG00000001419)	tubgcp3 (ENSSLDG00000001312)	ENSSLDG00000001271	rcbtb1 (ENSSLDG00000001219) #27	cdadc1 (ENSSLDG00000001205) #22	cab39l (ENSSLDG00000001167) #23	MCF2L (ENSSLDG00000001032)	ENSSLDG00000000938	ENSSLDG00000000901	sub1b (ENSSLDG00000000852)	ENSSLDG00000000834	zfr (ENSSLDG00000000762)	ENSSLDG00000000729
Greater amberjack	MODERN SPECIES	208											SOX1 (ENSSDUG00000021280)	ATP11A (ENSSDUG00000021251)	tubgcp3 (ENSSDUG00000021196)	ENSSDUG00000021186	rcbtb1 (ENSSDUG00000021158) #27	cdadc1 (ENSSDUG00000021144) #22	cab39l (ENSSDUG00000021125) #23	MCF2L (ENSSDUG00000021081)	RDX (ENSSDUG00000021029)
Barramundi perch	MODERN SPECIES	165	SEMA5B (ENSLCAG00010019680)	kpnb3 (ENSLCAG00010019658)	atg13 (ENSLCAG00010019633)	HARBI1 (ENSLCAG00010019629)	zgc:110699 (ENSLCAG00010019583)	ndufs1 (ENSLCAG00010019461)	unc50 (ENSLCAG00010019438)	ENSLCAG00010019436	ENSLCAG00010019392	arhgef7b (ENSLCAG00010018976)	SOX1 (ENSLCAG00010018822)	ATP11A (ENSLCAG00010017994)	tubgcp3 (ENSLCAG00010017896)	ENSLCAG00010017889	rcbtb1 (ENSLCAG00010017866) #27	cdadc1 (ENSLCAG00010017851) #22	cab39l (ENSLCAG00010017802) #23	MCF2L (ENSLCAG00010017427)	ENSLCAG00010016515	ENSLCAG00010016328
Pleuronectoidei	ANCESTRAL SPECIES	42								ENSGT00940000164275.f.c	ENSGT00940000157269.a.b	ENSGT00940000155360.B.k	ENSGT00940000162479.a	ENSGT00940000157849.n.c	ENSGT00940000157872	ENSGT00940000156984.a.a	ENSGT00940000155814.m #27	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000157874.q.a	ENSGT01090000260082.d.a.b.o.a	ENSGT00940000155107.b.a	ENSGT00940000155063.a.b	ENSGT00940000157128	ENSGT00950000183030	ENSGT00730000111163	ENSGT00940000159160	ENSGT00550000075118.k	ENSGT00390000009001	ENSGT00940000156552.c.b	ENSGT00990000203779	ENSGT01030000234607.A.b	ENSGT00530000063410.b
Turbot	MODERN SPECIES		ENSSMAG00000004009	ENSSMAG00000004036	ENSSMAG00000004253	ENSSMAG00000004263	ENSSMAG00000023417	ENSSMAG00000004288	ENSSMAG00000004291	ENSSMAG00000004318	ENSSMAG00000004428	arhgef7b (ENSSMAG00000004589)	ENSSMAG00000004680	ENSSMAG00000004696	tubgcp3 (ENSSMAG00000004863)	ENSSMAG00000004940	rcbtb1 (ENSSMAG00000004983) #27	cdadc1 (ENSSMAG00000005048) #22	cab39l (ENSSMAG00000005071) #23	ENSSMAG00000005108	ENSSMAG00000005339	ENSSMAG00000031623	ENSSMAG00000007176	ENSSMAG00000025555	ENSSMAG00000007130	zc3h13 (ENSSMAG00000007110)	cpb2 (ENSSMAG00000007082)	alg11 (ENSSMAG00000007070)	spp2 (ENSSMAG00000028508)	raph1b (ENSSMAG00000007021)	ENSSMAG00000006998	ENSSMAG00000006986	mdh1b (ENSSMAG00000006973)
Tongue sole	MODERN SPECIES	5	atg13 (ENSCSEG00000002249)	ENSCSEG00000002255	SLC19A1 (ENSCSEG00000002256)	ENSCSEG00000002258	ENSCSEG00000002262	ATP11A (ENSCSEG00000002286)	tubgcp3 (ENSCSEG00000002300)	fam184aa (ENSCSEG00000002310)	PLN (ENSCSEG00000002332)	ENSCSEG00000002333	ENSCSEG00000003346	SLC5A3 (ENSCSEG00000003349)	ddx3xa (ENSCSEG00000003352)	TGDS (ENSCSEG00000003361)	GPR180 (ENSCSEG00000003364)	cdadc1 (ENSCSEG00000003370) #22	cab39l (ENSCSEG00000003374) #23	MCF2L (ENSCSEG00000003384)	arpc2 (ENSCSEG00000003404)	ENSCSEG00000003406	ENSCSEG00000003409	ENSCSEG00000003414	bzw1a (ENSCSEG00000003418)	ENSCSEG00000003428	ENSCSEG00000003432	KYNU (ENSCSEG00000003441)	OSBPL11 (ENSCSEG00000003461)	ENSCSEG00000003472	LYPD1 (ENSCSEG00000003476)	actr3 (ENSCSEG00000003485)	pou3f3b (ENSCSEG00000003499)
Anabantaria	ANCESTRAL SPECIES	23	ENSGT00940000155502	ENSGT00390000007055	ENSGT00940000154348.c.b.a.b.b	ENSGT00940000159848	ENSGT00940000166946	ENSGT00940000153514.b.m.b	ENSGT00390000018553	ENSGT00940000164275.f.d	ENSGT00940000157269.a.b	ENSGT00940000155360.B.k	ENSGT00940000162479.a	ENSGT00940000157849.n.c	ENSGT00940000157872	ENSGT00940000156984.a.a	ENSGT00940000155814.m #27	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000157874.q.a	ENSGT01090000260082.d.a.b.o.a	ENSGT00940000155107.b.a	ENSGT00940000155063.a.b	ENSGT00940000157128	ENSGT00950000183030	ENSGT00730000111163	ENSGT00940000159160	ENSGT00550000075118.k	ENSGT00390000009001	ENSGT00940000156552.c.b	ENSGT00990000203779	ENSGT01030000234607.A.b	ENSGT00530000063410.b
Zig-zag eel	MODERN SPECIES	11	ENSMAMG00000021533	ENSMAMG00000021575	ENSMAMG00000021593	ENSMAMG00000021607	ENSMAMG00000021611	ENSMAMG00000021618	ENSMAMG00000021632	ENSMAMG00000021635	ENSMAMG00000021642	arhgef7b (ENSMAMG00000021649)	ENSMAMG00000021660	ENSMAMG00000021662	tubgcp3 (ENSMAMG00000021681)	ENSMAMG00000021696	rcbtb1 (ENSMAMG00000021704) #27	cdadc1 (ENSMAMG00000021707) #22	cab39l (ENSMAMG00000021730) #23	ENSMAMG00000021735	ENSMAMG00000021762	ENSMAMG00000021787	ENSMAMG00000021790	ENSMAMG00000021794	ENSMAMG00000021889	ENSMAMG00000021892	ENSMAMG00000021893	ENSMAMG00000021899	ENSMAMG00000021906	ENSMAMG00000021907	ENSMAMG00000021908	ENSMAMG00000021910	ENSMAMG00000021912
Anabantoidei	ANCESTRAL SPECIES	23	ENSGT00940000164538	ENSGT00940000158202	ENSGT00940000155390	ENSGT00940000155041	ENSGT00940000166048.a.b	ENSGT00940000156916	ENSGT00940000154633.id.b	ENSGT00940000157358	ENSGT00940000157269.a.b	ENSGT00940000155360.B.k	ENSGT00940000162479.a	ENSGT00940000157849.n.c	ENSGT00940000157872	ENSGT00940000156984.a.a	ENSGT00940000155814.m #27	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000157874.q.a	ENSGT01090000260082.d.a.b.o.a	ENSGT00940000155107.b.a	ENSGT00940000155063.a.b	ENSGT00940000157128	ENSGT00950000183030	ENSGT00730000111163	ENSGT00940000159160	ENSGT00550000075118.k	ENSGT00390000009001	ENSGT00940000156552.c.b	ENSGT00990000203779	ENSGT01030000234607.A.b	ENSGT00530000063410.b
Climbing perch	MODERN SPECIES	11	ENSATEG00000005457	ENSATEG00000005302	ENSATEG00000005263	ENSATEG00000005051	ENSATEG00000005037	ENSATEG00000005000	ENSATEG00000004989	ENSATEG00000004878	ENSATEG00000004855	arhgef7b (ENSATEG00000004776)	ENSATEG00000004770	ENSATEG00000004602	tubgcp3 (ENSATEG00000004470)	ENSATEG00000004442	rcbtb1 (ENSATEG00000004379) #27	cdadc1 (ENSATEG00000026372) #22	cab39l (ENSATEG00000004327) #23	ENSATEG00000004221	ENSATEG00000004149	ENSATEG00000004134	ENSATEG00000003973	ENSATEG00000029382	ENSATEG00000003942	zc3h13 (ENSATEG00000003937)	cpb2 (ENSATEG00000003852)	alg11 (ENSATEG00000003821)	spp2 (ENSATEG00000003777)	raph1b (ENSATEG00000003709)	ENSATEG00000003664	ENSATEG00000003650	mdh1b (ENSATEG00000003523)
Siamese fighting fish	MODERN SPECIES	10	nudt15 (ENSBSLG00000003533) #12	ENSBSLG00000003532	TRAK2 (ENSBSLG00000003530)	STRADB (ENSBSLG00000003529)	NBEAL1 (ENSBSLG00000003524)	ENSBSLG00000003521	ENSBSLG00000003520	pspc1 (ENSBSLG00000003519)	ENSBSLG00000003518	arhgef7b (ENSBSLG00000003511)	SOX1 (ENSBSLG00000003504)	ENSBSLG00000003490	tubgcp3 (ENSBSLG00000003486)	FGF14 (ENSBSLG00000003484)	rcbtb1 (ENSBSLG00000003483) #27	cdadc1 (ENSBSLG00000003482) #22	cab39l (ENSBSLG00000003481) #23	MCF2L (ENSBSLG00000003479)	ENSBSLG00000003477	ENSBSLG00000003476	RDX (ENSBSLG00000003472)	ENSBSLG00000003461	MAP4K4 (ENSBSLG00000003402)	chst10 (ENSBSLG00000003312)	chst10 (ENSBSLG00000003307)	rpl31 (ENSBSLG00000003300)	zc3h13 (ENSBSLG00000003293)	alg11 (ENSBSLG00000003291)	spp2 (ENSBSLG00000003287)	ENSBSLG00000003260	ENSBSLG00000003247
Cod	MODERN SPECIES	3	med16 (ENSGMOG00000002490)	ENSGMOG00000032570	ENSGMOG00000029662	ENSGMOG00000027619	stil (ENSGMOG00000032232)	serpinc1 (ENSGMOG00000000957)	ENSGMOG00000031880	s1pr1 (ENSGMOG00000020489)	dph5 (ENSGMOG00000013311)	slc30a7 (ENSGMOG00000013296)	CDC14A (ENSGMOG00000013277)	rtca (ENSGMOG00000013264)	dbt (ENSGMOG00000013254)	lrrc39 (ENSGMOG00000013245)	trmt13 (ENSGMOG00000028056)	ENSGMOG00000032607 #22
Spotted gar	MODERN SPECIES	655	cmss1 (ENSLOCG00000009391)	ENSLOCG00000009366	il1rapl1a (ENSLOCG00000009346)	nr0b1 (ENSLOCG00000009335)	TASL (ENSLOCG00000017801)	ENSLOCG00000009310	rnaseh2b (ENSLOCG00000009296) #35	dleu7 (ENSLOCG00000009287)	KCNRG (ENSLOCG00000009277)	trim13 (ENSLOCG00000009265) #32	spryd7b (ENSLOCG00000009258) #31	kpna3 (ENSLOCG00000009241) #30	arl11 (ENSLOCG00000017800)	rcbtb1 (ENSLOCG00000009231) #27	ENSLOCG00000009220 #26	cdadc1 (ENSLOCG00000009213) #22	cab39l (ENSLOCG00000009202) #23	MCF2L (ENSLOCG00000009166)	tubgcp3 (ENSLOCG00000009147)	ATP11A (ENSLOCG00000009109)	sox1b (ENSLOCG00000017799)	arhgef7a (ENSLOCG00000009085)	ankrd10a (ENSLOCG00000009072)	ing1 (ENSLOCG00000009063)	CARS2 (ENSLOCG00000009049)	naxd (ENSLOCG00000009033)	rab20 (ENSLOCG00000009026)	COL4A2 (ENSLOCG00000008986)	COL4A1 (ENSLOCG00000008957)	irs2a (ENSLOCG00000017798)	MYO16 (ENSLOCG00000008929)
Reedfish	MODERN SPECIES	12	COL4A1 (ENSECRG00000005394)	naxd (ENSECRG00000005349)	rab20 (ENSECRG00000005344)	ENSECRG00000005310	ankrd10a (ENSECRG00000005279)	ENSECRG00000005270	ing1 (ENSECRG00000005261)	ENSECRG00000005248	arhgef7a (ENSECRG00000005180)	sox1b (ENSECRG00000005151)	ENSECRG00000005138	tubgcp3 (ENSECRG00000005116)	cab39l (ENSECRG00000005083) #23	MCF2L (ENSECRG00000004950)	ATP11A (ENSECRG00000004882)	cdadc1 (ENSECRG00000004860) #22
Elephant shark	MODERN SPECIES	1505												rb1 (ENSCMIG00000004903) #15	RCBTB2 (ENSCMIG00000005213) #17	FNDC3A (ENSCMIG00000005415) #19	MLNR (ENSCMIG00000005802) #20	cdadc1 (ENSCMIG00000005804) #22	cab39l (ENSCMIG00000005809) #23	ENSCMIG00000005816	TPP2 (ENSCMIG00000005842)	ENSCMIG00000005894	METTL21C (ENSCMIG00000005908)	zgc:172121 (ENSCMIG00000005913)	BIVM (ENSCMIG00000005919)	poglut2 (ENSCMIG00000005924)	ENSCMIG00000005931	ENSCMIG00000005934	slc10a2 (ENSCMIG00000005941)	ENSCMIG00000005955	ENSCMIG00000005973	ENSCMIG00000005975	ENSCMIG00000005984
Cyclostomata	ANCESTRAL SPECIES																	ENSGT00940000153676.b #22
Hagfish	MODERN SPECIES	1396									ENSEBUG00000005552	ENSEBUG00000014650	stambpa (ENSEBUG00000016506)	ENSEBUG00000009920 #25	ENSEBUG00000016266	ENSEBUG00000008777	ENSEBUG00000011891 ##26	ENSEBUG00000004749 #22	shox (ENSEBUG00000004929)	ENSEBUG00000007474