Fungi/Metazoa group	ANCESTRAL SPECIES																	ENSGT00940000153676 #22
Bilateria	DUPLICATION
Bilateria	ANCESTRAL SPECIES																	ENSGT00940000153676.b #22
Chordata	ANCESTRAL SPECIES																	ENSGT00940000153676.b #22
Vertebrata	ANCESTRAL SPECIES																	ENSGT00940000153676.b #22
Gnathostomata	ANCESTRAL SPECIES	574												ENSGT00950000183202.b #16	ENSGT00940000158925 #18	ENSGT00940000159319 #20	ENSGT01100000263484.C.a #21	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23
Euteleostomi	ANCESTRAL SPECIES	432									ENSGT00950000183202.b #16	ENSGT01100000263536.A.b ##19	ENSGT01040000240444.A.a.a.a.a #17	ENSGT00940000158925 #18	ENSGT01100000263536.B.c.a #19	ENSGT00940000159319 #20	ENSGT01100000263484.C.a #21	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23
Sarcopterygii	ANCESTRAL SPECIES	11	ENSGT00940000160585	ENSGT00940000159528 #7	ENSGT01040000240539	ENSGT00390000011864 #8	ENSGT01050000244937.a.a #9	ENSGT00390000010170.a.b #11	ENSGT00390000003338 #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #15	ENSGT00950000183202.b #16	ENSGT01040000240444.A.a.a.a.a #17	ENSGT00940000158925 #18	ENSGT01100000263536.B.c.a #19	ENSGT00940000159319 #20	ENSGT01100000263484.C.a #21	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #24	ENSGT00950000182865.b.a.b.b.b.a #25	ENSGT00940000155814 #26	ENSGT00940000162731 #27	ENSGT00530000063715.b #28	ENSGT01050000244891.C.c.b #29	ENSGT00390000011048 #33	ENSGT00940000159715 #34	ENSGT00390000011439	ENSGT00940000162114	ENSGT00390000003838	ENSGT00590000083134.a.a	ENSGT00940000160941	ENSGT00390000016655.a.a.b
Tetrapoda	ANCESTRAL SPECIES		ENSGT00940000160585	ENSGT00940000159528 #7	ENSGT01040000240539	ENSGT00390000011864 #8	ENSGT01050000244937.a.a #9	ENSGT00390000010170.a.b #11	ENSGT00390000003338 #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #15	ENSGT00950000183202.b #16	ENSGT01040000240444.A.a.a.a.a #17	ENSGT00940000158925 #18	ENSGT01100000263536.B.c.a #19	ENSGT00940000159319 #20	ENSGT01100000263484.C.a #21	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #24	ENSGT00950000182865.b.a.b.b.b.a #25	ENSGT00940000155814 #26	ENSGT00940000162731 #27	ENSGT00530000063715.b #28	ENSGT01050000244891.C.c.b #29	ENSGT00390000011048 #33	ENSGT00940000159715 #34	ENSGT00940000161898 #35	ENSGT00390000011737	ENSGT00390000011439	ENSGT00940000162114	ENSGT00390000003838	ENSGT00590000083134.a.a
Amniota	ANCESTRAL SPECIES		ENSGT00940000160585	ENSGT00940000159528 #7	ENSGT01040000240539	ENSGT00390000011864 #8	ENSGT01050000244937.a.a #9	ENSGT00390000010170.a.b #11	ENSGT00390000003338 #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #15	ENSGT00950000183202.b #16	ENSGT01040000240444.A.a.a.a.a #17	ENSGT00940000158925 #18	ENSGT01100000263536.B.c.a #19	ENSGT00940000159319 #20	ENSGT01100000263484.C.a #21	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #24	ENSGT00950000182865.b.a.b.b.b.a #25	ENSGT00940000155814 #26	ENSGT00940000162731 #27	ENSGT00530000063715.b #28	ENSGT01050000244891.C.c.b #29	ENSGT00390000011048 #33	ENSGT00940000159715 #34	ENSGT00940000161898 #35	ENSGT00390000011737	ENSGT00390000011439	ENSGT00940000162114	ENSGT00390000003838	ENSGT00590000083134.a.a
Mammalia	ANCESTRAL SPECIES		ENSGT00940000173288	ENSGT00940000160585	ENSGT00940000159528 #7	ENSGT00390000011864 #8	ENSGT01050000244937.a.a #9	ENSGT00390000010170.a.b #11	ENSGT00390000003338 #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #15	ENSGT00950000183202.b #16	ENSGT01040000240444.A.a.a.a.a #17	ENSGT00940000158925 #18	ENSGT01100000263536.B.c.a #19	ENSGT00940000159319 #20	ENSGT01100000263484.C.a #21	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #24	ENSGT00950000182865.b.a.b.b.b.a #25	ENSGT00940000155814 #26	ENSGT00940000162731 #27	ENSGT00530000063715.b #28	ENSGT01050000244891.C.c.b #29	ENSGT00390000011048 #33	ENSGT00940000159715 #34	ENSGT00940000161898 #35	ENSGT00390000011737	ENSGT00390000011439	ENSGT00940000162114	ENSGT00390000003838	ENSGT00590000083134.a.a
Theria	ANCESTRAL SPECIES	1	ENSGT00940000173288	ENSGT00940000160585	ENSGT00940000159528 #7	ENSGT00390000011864 #8	ENSGT01050000244937.a.a #9	ENSGT00390000010170.a.b #11	ENSGT00390000003338 #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #15	ENSGT00950000183202.b #16	ENSGT01040000240444.A.a.a.a.a #17	ENSGT00940000158925 #18	ENSGT01100000263536.B.c.a #19	ENSGT00940000159319 #20	ENSGT01100000263484.C.a #21	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #24	ENSGT00950000182865.b.a.b.b.b.a #25	ENSGT00940000155814 #26	ENSGT00940000162731 #27	ENSGT00530000063715.b #28	ENSGT01050000244891.C.c.b #29	ENSGT00390000011048 #33	ENSGT00940000159715 #34	ENSGT00940000161898 #35	ENSGT00390000011737	ENSGT00390000011439	ENSGT00940000162114	ENSGT00390000003838	ENSGT00590000083134.a.a
Eutheria	ANCESTRAL SPECIES	17	ENSGT00710000106860	ENSGT00940000160585	ENSGT00940000159528 #7	ENSGT00390000011864 #8	ENSGT01050000244937.a.a #9	ENSGT00390000010170.a.b #11	ENSGT00390000003338 #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #15	ENSGT00950000183202.b #16	ENSGT01040000240444.A.a.a.a.a #17	ENSGT00940000158925 #18	ENSGT01100000263536.B.c.a #19	ENSGT00940000159319 #20	ENSGT01100000263484.C.a #21	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #24	ENSGT00950000182865.b.a.b.b.b.a #25	ENSGT00940000155814 #26	ENSGT00940000162731 #27	ENSGT00530000063715.b #28	ENSGT01050000244891.C.c.b #29	ENSGT00390000011048 #33	ENSGT00940000159715 #34	ENSGT00940000161898 #35	ENSGT00390000011737	ENSGT00390000011439	ENSGT00940000162114	ENSGT00390000003838	ENSGT00590000083134.a.a
Boreoeutheria	ANCESTRAL SPECIES	21	ENSGT00710000106860	ENSGT00940000160585	ENSGT00940000159528 #7	ENSGT00390000011864 #8	ENSGT01050000244937.a.a #9	ENSGT00390000010170.a.b #11	ENSGT00390000003338 #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #15	ENSGT00950000183202.b #16	ENSGT01040000240444.A.a.a.a.a #17	ENSGT00940000158925 #18	ENSGT01100000263536.B.c.a #19	ENSGT00940000159319 #20	ENSGT01100000263484.C.a #21	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000169427	ENSGT00940000158209 #24	ENSGT00950000182865.b.a.b.b.b.a #25	ENSGT00940000155814 #26	ENSGT00940000162731 #27	ENSGT00530000063715.b #28	ENSGT01050000244891.C.c.b #29	ENSGT00390000011048 #33	ENSGT00940000159715 #34	ENSGT00940000161898 #35	ENSGT00390000011737	ENSGT00390000011439	ENSGT00940000162114	ENSGT00390000003838
Euarchontoglires	ANCESTRAL SPECIES	21	ENSGT00710000106860	ENSGT00940000160585	ENSGT00940000159528 #7	ENSGT00390000011864 #8	ENSGT01050000244937.a.a #9	ENSGT00390000010170.a.b #11	ENSGT00390000003338 #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #15	ENSGT00950000183202.b #16	ENSGT01040000240444.A.a.a.a.a #17	ENSGT00940000158925 #18	ENSGT01100000263536.B.c.a #19	ENSGT00940000159319 #20	ENSGT01100000263484.C.a #21	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000169427	ENSGT00940000158209 #24	ENSGT00950000182865.b.a.b.b.b.a #25	ENSGT00940000155814 #26	ENSGT00940000162731 #27	ENSGT00530000063715.b #28	ENSGT01050000244891.C.c.b #29	ENSGT00390000011048 #33	ENSGT00940000159715 #34	ENSGT00940000161898 #35	ENSGT00390000011737	ENSGT00390000011439	ENSGT00940000162114	ENSGT00390000003838
Primates	ANCESTRAL SPECIES	26	ENSGT00710000106860	ENSGT00940000160585	ENSGT00940000159528 #7	ENSGT00390000011864 #8	ENSGT01050000244937.a.a #9	ENSGT00390000010170.a.b #11	ENSGT00390000003338 #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #15	ENSGT00950000183202.b #16	ENSGT01040000240444.A.a.a.a.a #17	ENSGT00940000158925 #18	ENSGT01100000263536.B.c.a #19	ENSGT00940000159319 #20	ENSGT01100000263484.C.a #21	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000169427	ENSGT00940000158209 #24	ENSGT00950000182865.b.a.b.b.b.a #25	ENSGT00940000155814 #26	ENSGT00940000162731 #27	ENSGT00530000063715.b #28	ENSGT01050000244891.C.c.b #29	ENSGT00390000011048 #33	ENSGT00940000159715 #34	ENSGT00940000161898 #35	ENSGT00390000011737	ENSGT00390000011439	ENSGT00940000162114	ENSGT00390000003838
Haplorrhini	ANCESTRAL SPECIES	28	ENSGT00710000106860	ENSGT00940000160585	ENSGT00940000159528 #7	ENSGT00390000011864 #8	ENSGT01050000244937.a.a #9	ENSGT00390000010170.a.b #11	ENSGT00390000003338 #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #15	ENSGT00950000183202.b #16	ENSGT01040000240444.A.a.a.a.a #17	ENSGT00940000158925 #18	ENSGT01100000263536.B.c.a #19	ENSGT00940000159319 #20	ENSGT01100000263484.C.a #21	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000169427	ENSGT00940000158209 #24	ENSGT00950000182865.b.a.b.b.b.a #25	ENSGT00940000155814 #26	ENSGT00940000162731 #27	ENSGT00530000063715.b #28	ENSGT01050000244891.C.c.b #29	ENSGT00390000011048 #33	ENSGT00940000159715 #34	ENSGT00940000161898 #35	ENSGT00390000011737	ENSGT00390000011439	ENSGT00940000162114	ENSGT00390000003838
Simiiformes	ANCESTRAL SPECIES	22	ENSGT01050000244937.a.a #9	ENSGT00940000161696.c.b	ENSGT00390000010170.a.b.c #11	ENSGT00390000003338 #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #15	ENSGT00950000183202.b #16	ENSGT00860000135722	ENSGT01040000240444.A.a.a.a.a #17	ENSGT00940000158925 #18	ENSGT00990000203619.B	ENSGT00910000146906	ENSGT01100000263536.B.c.a #19	ENSGT00940000159319 #20	ENSGT01100000263484.C.a #21	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000169427	ENSGT00940000158209 #24	ENSGT00950000182865.b.a.b.b.b.a #25	ENSGT00940000155814 #26	ENSGT00940000162731 #27	ENSGT00530000063715.b #28	ENSGT01050000244891.C.c.b #29	ENSGT00390000011048 #33	ENSGT00940000159715 #34	ENSGT00940000161898 #35	ENSGT00390000007612 #36	ENSGT00390000011737	ENSGT00390000011439.m.b	ENSGT00940000162114
Catarrhini	ANCESTRAL SPECIES	21	ENSGT00390000011864 #8	ENSGT01050000244937.a.a #9	ENSGT00940000161696.c.b	ENSGT00390000010170.a.b.c #11	ENSGT00390000003338 #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #15	ENSGT00950000183202.b #16	ENSGT00390000010218.f.a.b.a.a	ENSGT01040000240444.A.a.a.a.a #17	ENSGT00940000158925 #18	ENSGT00910000146906	ENSGT01100000263536.B.c.a #19	ENSGT00940000159319 #20	ENSGT01100000263484.C.a #21	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000169427	ENSGT00940000158209 #24	ENSGT00950000182865.b.a.b.b.b.a #25	ENSGT00940000155814 #26	ENSGT00940000162731 #27	ENSGT00530000063715.b #28	ENSGT01050000244891.C.c.b #29	ENSGT00950000182767.b.b.d.hb.a.a.a.b.b #32	ENSGT00390000011048 #33	ENSGT00940000159715 #34	ENSGT00940000161898 #35	ENSGT00390000007612 #36	ENSGT00390000011737	ENSGT00390000011439.m.b
Cercopithecidae	ANCESTRAL SPECIES	23	ENSGT00940000159528 #7	ENSGT00390000011864.o.a #8	ENSGT01050000244937.a.a #9	ENSGT00940000161696.c.b	ENSGT00390000010170.a.b.c.a #11	ENSGT00390000003338.i.b #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #15	ENSGT01040000240444.A.a.a.a.a #17	ENSGT00950000183202.b #16	ENSGT00940000158925 #18	ENSGT00910000146906	ENSGT01100000263536.B.c.a #19	ENSGT00940000159319 #20	ENSGT01100000263484.C.a #21	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000169427	ENSGT00940000158209 #24	ENSGT00950000182865.b.a.b.b.b.a #25	ENSGT00940000155814 #26	ENSGT00940000162731 #27	ENSGT00530000063715.b #28	ENSGT01050000244891.C.c.b #29	ENSGT00950000182767.b.b.d.hb.a.a.a.b.b #32	ENSGT00390000011048 #33	ENSGT00940000159715 #34	ENSGT00940000161898 #35	ENSGT00390000007612 #36	ENSGT00390000011737	ENSGT00390000011439.m.b
Cercopithecinae	ANCESTRAL SPECIES	20	ENSGT00390000011864.o.a #8	ENSGT01050000244937.a.a #9	ENSGT00940000161696.c.b	ENSGT00390000010170.a.b.c.a #11	ENSGT00390000003338.i.b #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #15	ENSGT00950000183202.b #16	ENSGT00390000010218.f.a.b.a.a	ENSGT01040000240444.A.a.a.a.a #17	ENSGT00940000158925 #18	ENSGT00910000146906	ENSGT01100000263536.B.c.a #19	ENSGT00940000159319 #20	ENSGT01100000263484.C.a #21	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000169427	ENSGT00940000158209 #24	ENSGT00950000182865.b.a.b.b.b.a #25	ENSGT00940000155814 #26	ENSGT00940000162731 #27	ENSGT00530000063715.b #28	ENSGT01050000244891.C.c.b #29	ENSGT00950000182767.b.b.d.hb.a.a.a.b.b #32	ENSGT00390000011048 #33	ENSGT00940000159715 #34	ENSGT00940000161898 #35	ENSGT00390000007612 #36	ENSGT00390000011737	ENSGT00390000011439.m.b
Cercopithecinae_a	ANCESTRAL SPECIES	19	ENSGT00390000011864.o.a #8	ENSGT01050000244937.a.a #9	ENSGT00940000161696.c.b	ENSGT00390000010170.a.b.c.a #11	ENSGT00390000003338.i.b #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #15	ENSGT00950000183202.b #16	ENSGT00390000010218.f.a.b.a.a	ENSGT01040000240444.A.a.a.a.a #17	ENSGT00940000158925 #18	ENSGT00910000146906	ENSGT01100000263536.B.c.a #19	ENSGT00940000159319 #20	ENSGT01100000263484.C.a #21	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00390000014577.a.k.b	ENSGT00940000158209 #24	ENSGT00950000182865.b.a.b.b.b.a #25	ENSGT00940000155814 #26	ENSGT00940000162731 #27	ENSGT00530000063715.b #28	ENSGT01050000244891.C.c.b #29	ENSGT00950000182767.b.b.d.hb.a.a.a.b.b #32	ENSGT00390000011048 #33	ENSGT00940000159715 #34	ENSGT00940000161898 #35	ENSGT00390000007612 #36	ENSGT00390000011737	ENSGT00390000011439.m.b
Cercopithecinae_b	ANCESTRAL SPECIES	28	ENSGT00940000159528 #7	ENSGT00390000011864.o.a #8	ENSGT01050000244937.a.a #9	ENSGT00940000161696.c.b	ENSGT00390000010170.a.b.c.a #11	ENSGT00390000003338.i.b #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #15	ENSGT01040000240444.A.a.a.a.a #17	ENSGT00950000183202.b #16	ENSGT00940000158925 #18	ENSGT00910000146906	ENSGT01100000263536.B.c.a #19	ENSGT00940000159319 #20	ENSGT01100000263484.C.a #21	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00390000014577.a.k.b	ENSGT00940000158209 #24	ENSGT00950000182865.b.a.b.b.b.a #25	ENSGT00940000155814 #26	ENSGT00940000162731 #27	ENSGT00530000063715.b #28	ENSGT01050000244891.C.c.b #29	ENSGT00950000182767.b.b.d.hb.a.a.a.b.b #32	ENSGT00390000011048 #33	ENSGT00940000159715 #34	ENSGT00940000161898 #35	ENSGT00390000007612 #36	ENSGT00390000011737	ENSGT00390000011439.m.b
Olive baboon	MODERN SPECIES	6	LRCH1 (ENSPANG00000006286) #7	ENSPANG00000010192 #8	HTR2A (ENSPANG00000022427) #9	ENSPANG00000050620 #10	SUCLA2 (ENSPANG00000002938) #11	NUDT15 (ENSPANG00000018183) #12	MED4 (ENSPANG00000017223) #13	ENSPANG00000050365 #14	ITM2B (ENSPANG00000010611) #15	RB1 (ENSPANG00000007572) #16	LPAR6 (ENSPANG00000010821) #17	RCBTB2 (ENSPANG00000017177) #18	CYSLTR2 (ENSPANG00000010610) #19	FNDC3A (ENSPANG00000006006) #20	MLNR (ENSPANG00000005882) #21	CDADC1 (ENSPANG00000017052) #22	CAB39L (ENSPANG00000046091) #23	SETDB2 (ENSPANG00000017051) #24	PHF11 (ENSPANG00000009973) #25	RCBTB1 (ENSPANG00000013866) #26	ARL11 (ENSPANG00000006280) #27	EBPL (ENSPANG00000016575) #28	KPNA3 (ENSPANG00000012863) #29	ENSPANG00000042729 #30	ENSPANG00000049978 #31	ENSPANG00000012862 #32	SPRYD7 (ENSPANG00000010055) #33	TRIM13 (ENSPANG00000021160) #34	KCNRG (ENSPANG00000029368) #35	ENSPANG00000006742 #36	ENSPANG00000048080 #37
Cercopithecinae_d	ANCESTRAL SPECIES	54	ENSGT00390000011864.o.a #8	ENSGT01050000244937.a.a #9	ENSGT00940000161696.c.b	ENSGT00390000010170.a.b.c.a #11	ENSGT00390000003338.i.b #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #15	ENSGT01040000240444.A.a.a.a.a #17	ENSGT00950000183202.b #16	ENSGT00940000158925 #18	ENSGT00910000146906	ENSGT01100000263536.B.c.a #19	ENSGT00940000159319 #20	ENSGT00390000002349.f	ENSGT01100000263484.C.a #21	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00390000014577.a.k.b	ENSGT00940000158209 #24	ENSGT00950000182865.b.a.b.b.b.a #25	ENSGT00940000155814 #26	ENSGT00940000162731 #27	ENSGT00530000063715.b #28	ENSGT01050000244891.C.c.b #29	ENSGT00950000182767.b.b.d.hb.a.a.a.b.b #32	ENSGT00390000011048 #33	ENSGT00940000159715 #34	ENSGT00940000161898 #35	ENSGT00390000007612 #36	ENSGT00390000011737	ENSGT00390000011439.m.b
Drill	MODERN SPECIES	989																CDADC1 (ENSMLEG00000002766) #22	CAB39L (ENSMLEG00000031934) #23	ENSMLEG00000037352	SETDB2 (ENSMLEG00000043613) #24	PHF11 (ENSMLEG00000034470) #25	RCBTB1 (ENSMLEG00000030558) #26	ARL11 (ENSMLEG00000013105) #27	EBPL (ENSMLEG00000034869) #28	KPNA3 (ENSMLEG00000032271) #29	ENSMLEG00000039733 ##32	SPRYD7 (ENSMLEG00000035414) #33	TRIM13 (ENSMLEG00000015458) #34	KCNRG (ENSMLEG00000028084) #35	ENSMLEG00000035068 #36	DLEU7 (ENSMLEG00000042275)	RNASEH2B (ENSMLEG00000043911)
Sooty mangabey	MODERN SPECIES	125	ENSCATG00000040583 #8	HTR2A (ENSCATG00000037177) #9	ENSCATG00000044105	ENSCATG00000040280 #11	ENSCATG00000009200 #12	MED4 (ENSCATG00000040995) #13	ITM2B (ENSCATG00000030426) #15	LPAR6 (ENSCATG00000014982) #17	RB1 (ENSCATG00000018582) #16	ENSCATG00000006797	RCBTB2 (ENSCATG00000033627) #18	CYSLTR2 (ENSCATG00000008094) #19	FNDC3A (ENSCATG00000044050) #20	ENSCATG00000007919	MLNR (ENSCATG00000007804) #21	CDADC1 (ENSCATG00000033587) #22	ENSCATG00000029394	CAB39L (ENSCATG00000040811) #23	SETDB2 (ENSCATG00000002055) #24	PHF11 (ENSCATG00000035264) #25	RCBTB1 (ENSCATG00000042520) #26	ARL11 (ENSCATG00000011750) #27	ENSCATG00000033973	KPNA3 (ENSCATG00000035335) #29	ENSCATG00000017588 #32	SPRYD7 (ENSCATG00000039787) #33	TRIM13 (ENSCATG00000038413) #34	KCNRG (ENSCATG00000035411) #35	ENSCATG00000029303 #36	DLEU7 (ENSCATG00000033900)	RNASEH2B (ENSCATG00000031336)
Macaca	ANCESTRAL SPECIES	19	ENSGT00940000159528 #7	ENSGT00390000011864.p ##8	ENSGT01050000244937.a.a #9	ENSGT00390000010170.a.b.c.a #11	ENSGT00390000003338.i.b #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #15	ENSGT00950000183202.b #16	ENSGT00390000010218.f.a.b.a.a	ENSGT01040000240444.A.a.a.a.a #17	ENSGT00940000158925 #18	ENSGT00910000146906	ENSGT01100000263536.B.c.a #19	ENSGT00940000159319 #20	ENSGT01030000237919	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00390000014577.a.k.b	ENSGT00940000158209 #24	ENSGT00950000182865.b.a.b.b.b.a #25	ENSGT00940000155814 #26	ENSGT00940000162731 #27	ENSGT00530000063715.b #28	ENSGT01050000244891.C.c.b #29	ENSGT00950000182767.b.b.d.hb.a.a.a.b.b #32	ENSGT00390000011048 #33	ENSGT00940000159715 #34	ENSGT00940000161898 #35	ENSGT00390000007612 #36	ENSGT00390000011737	ENSGT00390000011439.m.b
Pig-tailed macaque	MODERN SPECIES	171	ENSMNEG00000034915 #8	HTR2A (ENSMNEG00000020560) #9	ENSMNEG00000006210 #11	ENSMNEG00000041226 #12	MED4 (ENSMNEG00000040390) #13	ITM2B (ENSMNEG00000036643) #15	RB1 (ENSMNEG00000030265) #16	ENSMNEG00000034410	LPAR6 (ENSMNEG00000000292) #17	RCBTB2 (ENSMNEG00000045246) #18	ENSMNEG00000012494	CYSLTR2 (ENSMNEG00000044194) #19	FNDC3A (ENSMNEG00000038484) #20	ENSMNEG00000029704	MLNR (ENSMNEG00000043576) #21	CDADC1 (ENSMNEG00000018746) #22	CAB39L (ENSMNEG00000045272) #23	ENSMNEG00000041626	SETDB2 (ENSMNEG00000037148) #24	PHF11 (ENSMNEG00000033252) #25	RCBTB1 (ENSMNEG00000031917) #26	EBPL (ENSMNEG00000030512) #28	KPNA3 (ENSMNEG00000040002) #29	ENSMNEG00000040611 #32	SPRYD7 (ENSMNEG00000029382) #33	TRIM13 (ENSMNEG00000035416) #34	KCNRG (ENSMNEG00000029373) #35	ENSMNEG00000034266 #36	ENSMNEG00000038194	DLEU7 (ENSMNEG00000037049)	RNASEH2B (ENSMNEG00000030580)
Macaca_a	ANCESTRAL SPECIES	19	ENSGT00450000040303.d	ENSGT00940000160585	ENSGT00940000159528 #7	ENSGT00390000011864.p ##8	ENSGT01050000244937.a.a #9	ENSGT00390000010170.a.b.c.a #11	ENSGT00390000003338.i.b #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #15	ENSGT00950000183202.b #16	ENSGT00940000158925 #18	ENSGT00910000146906	ENSGT01100000263536.B.c.a #19	ENSGT00940000159319 #20	ENSGT01030000237919	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #24	ENSGT00950000182865.b.a.b.b.b.a #25	ENSGT00940000155814 #26	ENSGT00940000162731 #27	ENSGT00530000063715.b #28	ENSGT01050000244891.C.c.b #29	ENSGT00390000011048 #33	ENSGT00940000159715 #34	ENSGT00940000161898 #35	ENSGT00390000007612 #36	ENSGT00390000011737	ENSGT00390000011439.m.b	ENSGT00390000003838	ENSGT00590000083134.a.a
Crab-eating macaque	MODERN SPECIES	8	SUCLA2 (ENSMFAG00000043471) #11	NUDT15 (ENSMFAG00000042118) #12	MED4 (ENSMFAG00000036744) #13	ITM2B (ENSMFAG00000036817) #15	RB1 (ENSMFAG00000004544) #16	ENSMFAG00000059645	ENSMFAG00000064054	RCBTB2 (ENSMFAG00000042366) #18	ENSMFAG00000059363	CYSLTR2 (ENSMFAG00000055024) #19	FNDC3A (ENSMFAG00000032790) #20	ENSMFAG00000049454 ##31	ENSMFAG00000064862	ENSMFAG00000033530	ENSMFAG00000028078	CDADC1 (ENSMFAG00000032976) #22	CAB39L (ENSMFAG00000031142) #23	SETDB2 (ENSMFAG00000032631) #24	PHF11 (ENSMFAG00000044828) #25	RCBTB1 (ENSMFAG00000045129) #26	ARL11 (ENSMFAG00000051612) #27	ENSMFAG00000042629 #28	KPNA3 (ENSMFAG00000043025) #29	SPRYD7 (ENSMFAG00000041859) #33	TRIM13 (ENSMFAG00000042055) #34	KCNRG (ENSMFAG00000042387) #35	ENSMFAG00000055663 #36	RNASEH2B (ENSMFAG00000038464)	C13orf42 (ENSMFAG00000018059)	FAM124A (ENSMFAG00000030099)	SERPINE3 (ENSMFAG00000030949)
Rhesus	MODERN SPECIES	8	ENSMMUG00000059778 ##37	SUCLA2 (ENSMMUG00000007539) #11	NUDT15 (ENSMMUG00000056464) #12	MED4 (ENSMMUG00000017988) #13	ITM2B (ENSMMUG00000007888) #15	RB1 (ENSMMUG00000007891) #16	RCBTB2 (ENSMMUG00000017688) #18	CYSLTR2 (ENSMMUG00000063377) #19	ENSMMUG00000063973	ENSMMUG00000062735	ENSMMUG00000059939	FNDC3A (ENSMMUG00000023756) #20	ENSMMUG00000063566	ENSMMUG00000052690	MLNR (ENSMMUG00000056827) #21	CDADC1 (ENSMMUG00000013470) #22	CAB39L (ENSMMUG00000013472) #23	SETDB2 (ENSMMUG00000013473) #24	PHF11 (ENSMMUG00000013476) #25	RCBTB1 (ENSMMUG00000021029) #26	ARL11 (ENSMMUG00000011766) #27	EBPL (ENSMMUG00000020571) #28	KPNA3 (ENSMMUG00000020572) #29	SPRYD7 (ENSMMUG00000009579) #33	TRIM13 (ENSMMUG00000010898) #34	KCNRG (ENSMMUG00000010899) #35	ENSMMUG00000055718 #36	ENSMMUG00000058884	DLEU7 (ENSMMUG00000021744)	RNASEH2B (ENSMMUG00000021746)	C17H13orf42 (ENSMMUG00000054118)
Vervet Monkey	MODERN SPECIES	22	RUBCNL (ENSCSAG00000017755)	LRCH1 (ENSCSAG00000017752) #7	ESD (ENSCSAG00000017750) #8	HTR2A (ENSCSAG00000017748) #9	SUCLA2 (ENSCSAG00000017747) #11	NUDT15 (ENSCSAG00000017745) #12	MED4 (ENSCSAG00000017743) #13	ITM2B (ENSCSAG00000017740) #15	RB1 (ENSCSAG00000017738) #16	LPAR6 (ENSCSAG00000018609) #17	RCBTB2 (ENSCSAG00000017736) #18	CYSLTR2 (ENSCSAG00000018610) #19	FNDC3A (ENSCSAG00000017734) #20	MLNR (ENSCSAG00000017724) #21	ENSCSAG00000017722	CDADC1 (ENSCSAG00000017720) #22	CAB39L (ENSCSAG00000017717) #23	ENSCSAG00000017715	SETDB2 (ENSCSAG00000017713) #24	PHF11 (ENSCSAG00000017710) #25	RCBTB1 (ENSCSAG00000017709) #26	ARL11 (ENSCSAG00000018612) #27	EBPL (ENSCSAG00000017708) #28	KPNA3 (ENSCSAG00000017707) #29	SPRYD7 (ENSCSAG00000017704) #33	TRIM13 (ENSCSAG00000018614) #34	ENSCSAG00000017703	DLEU7 (ENSCSAG00000017702)	RNASEH2B (ENSCSAG00000017701)	FAM124A (ENSCSAG00000017698)	SERPINE3 (ENSCSAG00000017696)
Rhinopithecus	ANCESTRAL SPECIES	165			ENSGT00940000161696.c.b	ENSGT00390000010170.a.b.c.a #11	ENSGT00390000003338.i.b #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #15	ENSGT00390000010218.f.a.b.a.a	ENSGT01040000240444.A.a.a.a.a #17	ENSGT00950000183202.b #16	ENSGT00940000158925 #18	ENSGT01100000263536.B.c.a #19	ENSGT00940000159319 #20	ENSGT01100000263484.C.a #21	ENSGT00390000008978.q.a.b	ENSGT00940000153676.b #22	ENSGT00390000014577.a.k.b	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #24	ENSGT00950000182865.b.a.b.b.b.a #25	ENSGT00940000155814 #26	ENSGT00940000162731 #27	ENSGT00530000063715.b #28	ENSGT01050000244891.C.c.b #29	ENSGT00950000182767.b.b.d.hb.a.a.a.b.b.a #32	ENSGT00390000011048 #33	ENSGT00940000159715 #34	ENSGT00940000161898 #35	ENSGT00390000007612 #36	ENSGT00390000011737	ENSGT00390000011439.m.b
Black snub-nosed monkey	MODERN SPECIES	464				ENSRBIG00000036056	SUCLA2 (ENSRBIG00000033328) #11	ENSRBIG00000030175 #12	MED4 (ENSRBIG00000037170) #13	ITM2B (ENSRBIG00000030686) #15	ENSRBIG00000029549	LPAR6 (ENSRBIG00000029799) #17	RB1 (ENSRBIG00000033901) #16	RCBTB2 (ENSRBIG00000028201) #18	FNDC3A (ENSRBIG00000034032) #20	MLNR (ENSRBIG00000043617) #21	ENSRBIG00000033894	CDADC1 (ENSRBIG00000004767) #22	ENSRBIG00000004387	CAB39L (ENSRBIG00000031272) #23	SETDB2 (ENSRBIG00000006562) #24	PHF11 (ENSRBIG00000028151) #25	RCBTB1 (ENSRBIG00000034157) #26	ARL11 (ENSRBIG00000024949) #27	EBPL (ENSRBIG00000043563) #28	KPNA3 (ENSRBIG00000043478) #29	ENSRBIG00000023911 #32	SPRYD7 (ENSRBIG00000028326) #33	TRIM13 (ENSRBIG00000035646) #34	KCNRG (ENSRBIG00000044018) #35	ENSRBIG00000032886 #36	DLEU7 (ENSRBIG00000041915)	RNASEH2B (ENSRBIG00000028928)
Golden snub-nosed monkey	MODERN SPECIES	1111				ENSRROG00000017591 #11	ENSRROG00000003860 #12	MED4 (ENSRROG00000024064) #13	ITM2B (ENSRROG00000044024) #15	ENSRROG00000039915	LPAR6 (ENSRROG00000014042) #17	RB1 (ENSRROG00000035485) #16	RCBTB2 (ENSRROG00000035536) #18	CYSLTR2 (ENSRROG00000031421) #19	FNDC3A (ENSRROG00000035387) #20	MLNR (ENSRROG00000044972) #21	ENSRROG00000032981	CDADC1 (ENSRROG00000032374) #22	ENSRROG00000037477	CAB39L (ENSRROG00000012193) #23	SETDB2 (ENSRROG00000032499) #24	PHF11 (ENSRROG00000039790) #25	RCBTB1 (ENSRROG00000037694) #26	ARL11 (ENSRROG00000000591) #27	EBPL (ENSRROG00000045110) #28	KPNA3 (ENSRROG00000040985) #29	ENSRROG00000035429 #32	SPRYD7 (ENSRROG00000045600) #33	TRIM13 (ENSRROG00000034403) #34	KCNRG (ENSRROG00000036212) #35	ENSRROG00000044631 #36	ENSRROG00000043139	DLEU7 (ENSRROG00000035248)
Hominoidea	ANCESTRAL SPECIES	21	ENSGT00940000159528 #7	ENSGT00390000011864 #8	ENSGT01050000244937.a.a #9	ENSGT00390000010170.a.b.c #11	ENSGT00390000003338 #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #15	ENSGT00950000183202.b #16	ENSGT00390000010218.f.a.b.a.a	ENSGT01040000240444.A.a.a.a.a #17	ENSGT00940000158925 #18	ENSGT00910000146906	ENSGT01100000263536.B.c.a #19	ENSGT00940000159319 #20	ENSGT01100000263484.C.a #21	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #24	ENSGT00950000182865.b.a.b.b.b.a #25	ENSGT00940000155814 #26	ENSGT00940000162731 #27	ENSGT00530000063715.b #28	ENSGT01050000244891.C.c.b #29	ENSGT00950000182767.b.b.d.hb.a.a.a.b.b.f #32	ENSGT00390000011048 #33	ENSGT00940000159715 #34	ENSGT00940000161898 #35	ENSGT00390000007612 #36	ENSGT00390000011737	ENSGT00390000011439.m.b	ENSGT00940000162114
Hominidae	ANCESTRAL SPECIES	23	ENSGT00940000159528 #7	ENSGT00390000011864 #8	ENSGT01050000244937.a.a #9	ENSGT00390000010170.a.b.c #11	ENSGT00390000003338 #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #15	ENSGT00950000183202.b #16	ENSGT00390000010218.f.a.b.a.a	ENSGT01040000240444.A.a.a.a.a #17	ENSGT00940000158925 #18	ENSGT00910000146906	ENSGT01100000263536.B.c.a #19	ENSGT00940000159319 #20	ENSGT01100000263484.C.a #21	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #24	ENSGT00950000182865.b.a.b.b.b.a #25	ENSGT00940000155814 #26	ENSGT00940000162731 #27	ENSGT00530000063715.b #28	ENSGT01050000244891.C.c.b #29	ENSGT00950000182767.b.b.d.hb.a.a.a.b.b.f #32	ENSGT00390000011048 #33	ENSGT00940000159715 #34	ENSGT00940000161898 #35	ENSGT00390000007612 #36	ENSGT00390000011737	ENSGT00390000011439.m.b	ENSGT00940000162114
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	23	ENSGT00390000011864 #8	ENSGT01050000244937.a.a #9	ENSGT00390000010170.a.b.c.c #11	ENSGT00390000003338 #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #15	ENSGT00950000183202.b #16	ENSGT00390000010218.f.a.b.a.a	ENSGT01040000240444.A.a.a.a.a #17	ENSGT00940000158925 #18	ENSGT00910000146906	ENSGT01100000263536.B.c.a #19	ENSGT00940000159319 #20	ENSGT00390000018086.n.a.b.b	ENSGT01100000263484.C.a #21	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #24	ENSGT00950000182865.b.a.b.b.b.a #25	ENSGT00940000155814 #26	ENSGT00940000162731 #27	ENSGT00530000063715.b.a.a #28	ENSGT01050000244891.C.c.b #29	ENSGT00950000182767.b.b.d.hb.a.a.a.b.b.e #32	ENSGT00390000011048 #33	ENSGT00940000159715 #34	ENSGT00940000161898 #35	ENSGT00390000007612 #36	ENSGT00390000001347.vb.a.b.b.a.b	ENSGT00390000011737	ENSGT00390000011439.m.b
Homo/Pan group	ANCESTRAL SPECIES	22	ENSGT00390000011864 #8	ENSGT01050000244937.a.a #9	ENSGT00390000010170.a.b.c.c #11	ENSGT00390000003338 #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #15	ENSGT00950000183202.b #16	ENSGT00390000010218.f.a.b.a.a	ENSGT01040000240444.A.a.a.a.a #17	ENSGT00940000158925 #18	ENSGT00910000146906	ENSGT01100000263536.B.c.a #19	ENSGT00940000159319 #20	ENSGT00390000018086.n.a.b.b	ENSGT01100000263484.C.a #21	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #24	ENSGT00950000182865.b.a.b.b.b.a #25	ENSGT00940000155814 #26	ENSGT00940000162731 #27	ENSGT00530000063715.b.a.a #28	ENSGT01050000244891.C.c.b #29	ENSGT00390000011048 #33	ENSGT00940000159715 #34	ENSGT00940000161898 #35	ENSGT00390000007612 #36	ENSGT00390000001347.vb.a.b.b.a.b	ENSGT00390000011737	ENSGT00390000011439.m.b	ENSGT00940000162114
Pan	ANCESTRAL SPECIES	22	ENSGT00940000161696.c.b	ENSGT00940000154415.x.b	ENSGT00390000010170.a.b.c.c #11	ENSGT00390000003338 #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #15	ENSGT00950000183202.b #16	ENSGT00390000010218.f.a.b.a.a	ENSGT01040000240444.A.a.a.a.a #17	ENSGT00940000158925 #18	ENSGT00910000146906	ENSGT01100000263536.B.c.a #19	ENSGT00940000159319 #20	ENSGT00390000018086.n.a.b.b	ENSGT01100000263484.C.a #21	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #24	ENSGT00950000182865.b.a.b.b.b.a #25	ENSGT00940000155814 #26	ENSGT00940000162731 #27	ENSGT00530000063715.b.a.a #28	ENSGT01050000244891.C.c.b #29	ENSGT00950000182767.b.b.d.hb.a.a.a.b.a.d ##32	ENSGT00390000011048 #33	ENSGT00940000159715 #34	ENSGT00940000161898 #35	ENSGT00390000007612 #36	ENSGT00390000001347.vb.a.b.b.a.b	ENSGT00390000011737	ENSGT00390000011439.m.b
Chimpanzee	MODERN SPECIES	4	HTR2A (ENSPTRG00000005858) #9	ENSPTRG00000044084	ENSPTRG00000040949	SUCLA2 (ENSPTRG00000005859) #11	ENSPTRG00000042329 #12	MED4 (ENSPTRG00000005861) #13	ITM2B (ENSPTRG00000005863) #15	RB1 (ENSPTRG00000005864) #16	LPAR6 (ENSPTRG00000005865) #17	RCBTB2 (ENSPTRG00000005866) #18	ENSPTRG00000045034	CYSLTR2 (ENSPTRG00000045872) #19	FNDC3A (ENSPTRG00000023284) #20	ENSPTRG00000051644	MLNR (ENSPTRG00000045556) #21	CDADC1 (ENSPTRG00000005871) #22	CAB39L (ENSPTRG00000005872) #23	SETDB2 (ENSPTRG00000005873) #24	PHF11 (ENSPTRG00000005874) #25	RCBTB1 (ENSPTRG00000005875) #26	ARL11 (ENSPTRG00000005876) #27	EBPL (ENSPTRG00000005877) #28	KPNA3 (ENSPTRG00000005878) #29	ENSPTRG00000051804 ##32	SPRYD7 (ENSPTRG00000005879) #33	TRIM13 (ENSPTRG00000031189) #34	KCNRG (ENSPTRG00000005881) #35	ENSPTRG00000045142 #36	ENSPTRG00000045923	DLEU7 (ENSPTRG00000005885)	RNASEH2B (ENSPTRG00000005886)
Bonobo	MODERN SPECIES	4	ENSPPAG00000035492	ENSPPAG00000039901	SUCLA2 (ENSPPAG00000037438) #11	NUDT15 (ENSPPAG00000037539) #12	MED4 (ENSPPAG00000038697) #13	ENSPPAG00000040476 #15	RB1 (ENSPPAG00000002165) #16	ENSPPAG00000030030	LPAR6 (ENSPPAG00000006621) #17	RCBTB2 (ENSPPAG00000038976) #18	ENSPPAG00000029505	CYSLTR2 (ENSPPAG00000003898) #19	FNDC3A (ENSPPAG00000032461) #20	ENSPPAG00000032803	MLNR (ENSPPAG00000027956) #21	CDADC1 (ENSPPAG00000028450) #22	CAB39L (ENSPPAG00000029104) #23	SETDB2 (ENSPPAG00000039854) #24	PHF11 (ENSPPAG00000030056) #25	RCBTB1 (ENSPPAG00000032068) #26	ARL11 (ENSPPAG00000033238) #27	ENSPPAG00000042659 #28	KPNA3 (ENSPPAG00000033827) #29	ENSPPAG00000039069 ##32	SPRYD7 (ENSPPAG00000039609) #33	TRIM13 (ENSPPAG00000039706) #34	KCNRG (ENSPPAG00000006776) #35	ENSPPAG00000025890 #36	ENSPPAG00000028472	DLEU7 (ENSPPAG00000019375)	RNASEH2B (ENSPPAG00000026374)
Human	MODERN SPECIES	4	LRRC63 (ENSG00000173988)	RUBCNL (ENSG00000102445)	LRCH1 (ENSG00000136141) #7	ESD (ENSG00000139684) #8	HTR2A (ENSG00000102468) #9	SUCLA2 (ENSG00000136143) #11	NUDT15 (ENSG00000136159) #12	MED4 (ENSG00000136146) #13	ITM2B (ENSG00000136156) #15	RB1 (ENSG00000139687) #16	LPAR6 (ENSG00000139679) #17	RCBTB2 (ENSG00000136161) #18	CYSLTR2 (ENSG00000152207) #19	FNDC3A (ENSG00000102531) #20	MLNR (ENSG00000102539) #21	CDADC1 (ENSG00000102543) #22	CAB39L (ENSG00000102547) #23	SETDB2 (ENSG00000136169) #24	PHF11 (ENSG00000136147) #25	RCBTB1 (ENSG00000136144) #26	ARL11 (ENSG00000152213) #27	EBPL (ENSG00000123179) #28	KPNA3 (ENSG00000102753) #29	SPRYD7 (ENSG00000123178) #33	TRIM13 (ENSG00000204977) #34	KCNRG (ENSG00000198553) #35	DLEU7 (ENSG00000186047)	RNASEH2B (ENSG00000136104)	C13orf42 (ENSG00000226792)	FAM124A (ENSG00000150510)	SERPINE3 (ENSG00000253309)
Gorilla	MODERN SPECIES	4	HTR2A (ENSGGOG00000038568) #9	ENSGGOG00000040252	SUCLA2 (ENSGGOG00000008224) #11	NUDT15 (ENSGGOG00000008232) #12	MED4 (ENSGGOG00000014132) #13	ITM2B (ENSGGOG00000006744) #15	RB1 (ENSGGOG00000016440) #16	ENSGGOG00000025744	LPAR6 (ENSGGOG00000015398) #17	RCBTB2 (ENSGGOG00000004291) #18	ENSGGOG00000043311	CYSLTR2 (ENSGGOG00000040254) #19	FNDC3A (ENSGGOG00000005701) #20	ENSGGOG00000042037	MLNR (ENSGGOG00000003817) #21	CDADC1 (ENSGGOG00000005192) #22	CAB39L (ENSGGOG00000000576) #23	SETDB2 (ENSGGOG00000016016) #24	PHF11 (ENSGGOG00000014624) #25	RCBTB1 (ENSGGOG00000007787) #26	ARL11 (ENSGGOG00000004442) #27	EBPL (ENSGGOG00000023967) #28	KPNA3 (ENSGGOG00000037674) #29	ENSGGOG00000038396 #32	SPRYD7 (ENSGGOG00000005611) #33	TRIM13 (ENSGGOG00000001619) #34	KCNRG (ENSGGOG00000001621) #35	ENSGGOG00000025724 #36	ENSGGOG00000043357	DLEU7 (ENSGGOG00000005664)	RNASEH2B (ENSGGOG00000001044)
Orangutan	MODERN SPECIES	4	RUBCNL (ENSPPYG00000005348)	ENSPPYG00000035548 ##30	LRCH1 (ENSPPYG00000005349) #7	ESD (ENSPPYG00000029594) #8	HTR2A (ENSPPYG00000005351) #9	SUCLA2 (ENSPPYG00000005352) #11	MED4 (ENSPPYG00000005354) #13	NUDT15 (ENSPPYG00000005353) #12	ITM2B (ENSPPYG00000005356) #15	RB1 (ENSPPYG00000005357) #16	RCBTB2 (ENSPPYG00000005361) #18	CYSLTR2 (ENSPPYG00000005362) #19	FNDC3A (ENSPPYG00000005363) #20	ENSPPYG00000037999	MLNR (ENSPPYG00000005364) #21	CDADC1 (ENSPPYG00000005365) #22	CAB39L (ENSPPYG00000005366) #23	SETDB2 (ENSPPYG00000005368) #24	PHF11 (ENSPPYG00000005369) #25	RCBTB1 (ENSPPYG00000005370) #26	ARL11 (ENSPPYG00000031330) #27	EBPL (ENSPPYG00000032916) #28	KPNA3 (ENSPPYG00000005372) #29	ENSPPYG00000039366 #32	ENSPPYG00000031527 #32	SPRYD7 (ENSPPYG00000032002) #33	TRIM13 (ENSPPYG00000036477) #34	ENSPPYG00000005375 #35	ENSPPYG00000032765 #36	DLEU7 (ENSPPYG00000005377)	RNASEH2B (ENSPPYG00000005378)
Gibbon	MODERN SPECIES	20	LRCH1 (ENSNLEG00000002812) #7	ESD (ENSNLEG00000002862) #8	HTR2A (ENSNLEG00000002930) #9	ENSNLEG00000034996	SUCLA2 (ENSNLEG00000002948) #11	NUDT15 (ENSNLEG00000031040) #12	MED4 (ENSNLEG00000002961) #13	ITM2B (ENSNLEG00000032591) #15	RB1 (ENSNLEG00000003150) #16	ENSNLEG00000029413	LPAR6 (ENSNLEG00000032872) #17	RCBTB2 (ENSNLEG00000003314) #18	FNDC3A (ENSNLEG00000003383) #20	ENSNLEG00000033908	MLNR (ENSNLEG00000003571) #21	CDADC1 (ENSNLEG00000003574) #22	CAB39L (ENSNLEG00000003584) #23	SETDB2 (ENSNLEG00000003613) #24	PHF11 (ENSNLEG00000003639) #25	RCBTB1 (ENSNLEG00000003661) #26	ARL11 (ENSNLEG00000031734) #27	EBPL (ENSNLEG00000030148) #28	KPNA3 (ENSNLEG00000003711) #29	SPRYD7 (ENSNLEG00000003774) #33	TRIM13 (ENSNLEG00000033521) #34	ENSNLEG00000003786 #35	ENSNLEG00000031661 #36	DLEU7 (ENSNLEG00000003803)	RNASEH2B (ENSNLEG00000003804)	ENSNLEG00000003855	C13orf42 (ENSNLEG00000031949)
Platyrrhini	ANCESTRAL SPECIES	23	ENSGT01050000244937.a.a #9	ENSGT00940000161696.c.b	ENSGT00390000010170.a.b.c.e #11	ENSGT00390000003338.m #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #15	ENSGT00950000183202.b #16	ENSGT00860000135722	ENSGT01040000240444.A.a.a.a.a #17	ENSGT00940000158925 #18	ENSGT00990000203619.B	ENSGT00910000146906	ENSGT01100000263536.B.c.a #19	ENSGT00940000159319 #20	ENSGT01100000263484.C.a #21	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #24	ENSGT00950000182865.b.a.b.b.b.a #25	ENSGT00940000155814 #26	ENSGT00940000162731 #27	ENSGT00530000063715.b #28	ENSGT01050000244891.C.c.b #29	ENSGT00390000011048 #33	ENSGT00940000159715 #34	ENSGT00940000161898 #35	ENSGT00390000007612 #36	ENSGT00390000011737	ENSGT00390000011439.m.b	ENSGT00940000162114	ENSGT00390000003838
Cebidae	ANCESTRAL SPECIES	26	ENSGT01050000244937.a.a #9	ENSGT00940000161696.c.b	ENSGT00390000010170.a.b.c.e #11	ENSGT00390000003338.m #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #15	ENSGT00950000183202.b #16	ENSGT00860000135722	ENSGT01040000240444.A.a.a.a.a #17	ENSGT00940000158925 #18	ENSGT00990000203619.B	ENSGT00910000146906	ENSGT01100000263536.B.c.a #19	ENSGT00940000159319 #20	ENSGT01100000263484.C.a #21	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #24	ENSGT00950000182865.b.a.b.b.b.a #25	ENSGT00940000155814 #26	ENSGT00940000162731 #27	ENSGT00530000063715.b #28	ENSGT01050000244891.C.c.b #29	ENSGT00390000011048 #33	ENSGT00940000159715 #34	ENSGT00940000161898 #35	ENSGT00390000011737	ENSGT00390000011439.m.b	ENSGT00390000011439.m.a.a	ENSGT00940000162114	ENSGT00390000003838
Cebidae_a	ANCESTRAL SPECIES	28	ENSGT00390000011864.m.a #8	ENSGT01050000244937.a.a #9	ENSGT00940000161696.c.b	ENSGT00390000010170.a.b.c.e #11	ENSGT00390000003338.m #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #15	ENSGT00950000183202.b #16	ENSGT00860000135722	ENSGT01040000240444.A.a.a.a.a #17	ENSGT00940000158925 #18	ENSGT00910000146906	ENSGT01100000263536.B.c.a #19	ENSGT00940000159319 #20	ENSGT01100000263484.C.a #21	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #24	ENSGT00950000182865.b.a.b.b.b.a #25	ENSGT00940000155814 #26	ENSGT00530000063715.b #28	ENSGT01050000244891.C.c.b #29	ENSGT00390000011048 #33	ENSGT00940000159715 #34	ENSGT00940000161898 #35	ENSGT00390000011737	ENSGT00390000011439.m.b	ENSGT00390000003838	ENSGT00590000083134.a.a	ENSGT00940000160941	ENSGT00390000016655.a.a.b
Capuchin	MODERN SPECIES	94	LRRC63 (ENSCCAG00000024800)	RUBCNL (ENSCCAG00000023570)	LRCH1 (ENSCCAG00000036225) #7	ENSCCAG00000025918 #8	HTR2A (ENSCCAG00000020537) #9	ENSCCAG00000027774	SUCLA2 (ENSCCAG00000036078) #11	NUDT15 (ENSCCAG00000034630) #12	MED4 (ENSCCAG00000037625) #13	ITM2B (ENSCCAG00000025031) #15	LPAR6 (ENSCCAG00000014413) #17	RB1 (ENSCCAG00000019226) #16	RCBTB2 (ENSCCAG00000029598) #18	FNDC3A (ENSCCAG00000022083) #20	MLNR (ENSCCAG00000012939) #21	CDADC1 (ENSCCAG00000037595) #22	CAB39L (ENSCCAG00000027201) #23	SETDB2 (ENSCCAG00000031604) #24	PHF11 (ENSCCAG00000020321) #25	RCBTB1 (ENSCCAG00000024661) #26	ENSCCAG00000034833	EBPL (ENSCCAG00000028820) #28	KPNA3 (ENSCCAG00000034651) #29	SPRYD7 (ENSCCAG00000035704) #33	TRIM13 (ENSCCAG00000021391) #34	KCNRG (ENSCCAG00000033873) #35	DLEU7 (ENSCCAG00000033394)	RNASEH2B (ENSCCAG00000026979)	C13orf42 (ENSCCAG00000017028)
Bolivian squirrel monkey	MODERN SPECIES	198	ENSSBOG00000033017	ENSSBOG00000026010	ENSSBOG00000030465	ENSSBOG00000029965 #11	NUDT15 (ENSSBOG00000020573) #12	MED4 (ENSSBOG00000024066) #13	ITM2B (ENSSBOG00000018913) #15	RB1 (ENSSBOG00000027893) #16	ENSSBOG00000026221	LPAR6 (ENSSBOG00000036320) #17	RCBTB2 (ENSSBOG00000026825) #18	ENSSBOG00000019051	CYSLTR2 (ENSSBOG00000025475) #19	FNDC3A (ENSSBOG00000026737) #20	MLNR (ENSSBOG00000035313) #21	CDADC1 (ENSSBOG00000025762) #22	CAB39L (ENSSBOG00000027469) #23	SETDB2 (ENSSBOG00000023249) #24	PHF11 (ENSSBOG00000034363) #25	RCBTB1 (ENSSBOG00000017490) #26	EBPL (ENSSBOG00000028545) #28	KPNA3 (ENSSBOG00000030689) #29	ENSSBOG00000030646	SPRYD7 (ENSSBOG00000031956) #33	TRIM13 (ENSSBOG00000020064) #34	KCNRG (ENSSBOG00000023070) #35	ENSSBOG00000025039
Marmoset	MODERN SPECIES		ENSCJAG00000077810	HTR2A (ENSCJAG00000060527) #9	ENSCJAG00000009278 #11	NUDT15 (ENSCJAG00000043795) #12	ENSCJAG00000040641	ENSCJAG00000009256 #13	ITM2B (ENSCJAG00000073561) #15	ENSCJAG00000074787	LPAR6 (ENSCJAG00000060429) #17	RB1 (ENSCJAG00000009076) #16	RCBTB2 (ENSCJAG00000009006) #18	ENSCJAG00000075551	ENSCJAG00000059197 ##37	FNDC3A (ENSCJAG00000008978) #20	MLNR (ENSCJAG00000071397) #21	CDADC1 (ENSCJAG00000008925) #22	CAB39L (ENSCJAG00000047061) #23	ENSCJAG00000080953	SETDB2 (ENSCJAG00000008864) #24	RCBTB1 (ENSCJAG00000008772) #26	ARL11 (ENSCJAG00000022614) #27	EBPL (ENSCJAG00000008764) #28	ENSCJAG00000044787 #29	SPRYD7 (ENSCJAG00000007818) #33	ENSCJAG00000073191	ENSCJAG00000076737	ENSCJAG00000040188	ENSCJAG00000077070	ENSCJAG00000052202	ENSCJAG00000087100	TRIM13 (ENSCJAG00000008633) #34
Mas night monkey	MODERN SPECIES	902	ENSANAG00000028654	ENSANAG00000025311 #11	NUDT15 (ENSANAG00000023666) #12	ENSANAG00000027167	ENSANAG00000026714 #13	ITM2B (ENSANAG00000029180) #15	ENSANAG00000011241	LPAR6 (ENSANAG00000016578) #17	RB1 (ENSANAG00000022056) #16	ENSANAG00000031593	RCBTB2 (ENSANAG00000023045) #18	ENSANAG00000013536	CYSLTR2 (ENSANAG00000024658) #19	FNDC3A (ENSANAG00000029046) #20	MLNR (ENSANAG00000037292) #21	CDADC1 (ENSANAG00000024556) #22	CAB39L (ENSANAG00000024473) #23
Tarsier	MODERN SPECIES	2864																CDADC1 (ENSTSYG00000004957) #22	CAB39L (ENSTSYG00000000990) #23	SETDB2 (ENSTSYG00000014051) #24	PHF11 (ENSTSYG00000010105) #25	RCBTB1 (ENSTSYG00000010141) #26
Strepsirrhini	ANCESTRAL SPECIES	27	ENSGT00710000106860	ENSGT00940000160585	ENSGT00940000159528 #7	ENSGT00390000011864 #8	ENSGT01050000244937.a.a #9	ENSGT00390000010170.a.b #11	ENSGT00390000003338 #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #15	ENSGT00950000183202.b #16	ENSGT01040000240444.A.a.a.a.a #17	ENSGT00940000158925 #18	ENSGT00990000203619.B	ENSGT00940000159319 #20	ENSGT01100000263484.C.a #21	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #24	ENSGT00950000182865.b.a.b.b.b.a #25	ENSGT00940000155814 #26	ENSGT00940000162731 #27	ENSGT00530000063715.b #28	ENSGT01050000244891.C.c.b #29	ENSGT00390000011048 #33	ENSGT00940000159715 #34	ENSGT00940000161898 #35	ENSGT00390000011737	ENSGT00390000011439	ENSGT00940000162114	ENSGT00390000003838	ENSGT00590000083134.a.a
Lemuriformes	ANCESTRAL SPECIES	18	ENSGT00490000043976	ENSGT00940000161558	ENSGT00390000010017	ENSGT00730000110966	ENSGT01050000244937.a.a #9	ENSGT00390000010170.a.b #11	ENSGT00390000003338 #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #15	ENSGT00950000183202.b #16	ENSGT01040000240444.A.a.a.a.a #17	ENSGT00940000158925 #18	ENSGT00990000203619.B	ENSGT00940000159319 #20	ENSGT01100000263484.C.a #21	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #24	ENSGT00950000182865.b.a.b.b.b.a #25	ENSGT00940000155814 #26	ENSGT00940000162731 #27	ENSGT00530000063715.b #28	ENSGT01050000244891.C.c.b #29	ENSGT00390000011048 #33	ENSGT00940000159715 #34	ENSGT00940000161898 #35	ENSGT00390000011737	ENSGT00390000011439	ENSGT00940000162114	ENSGT00390000003838	ENSGT00590000083134.a.a
Lemuriformes_a	ANCESTRAL SPECIES	41	ENSGT00490000043976	ENSGT00940000161558	ENSGT00390000010017	ENSGT00730000110966	ENSGT01050000244937.a.a #9	ENSGT00390000010170.a.b #11	ENSGT00390000003338 #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #15	ENSGT00950000183202.b #16	ENSGT01040000240444.A.a.a.a.a #17	ENSGT00940000158925 #18	ENSGT00990000203619.B	ENSGT00940000159319 #20	ENSGT01100000263484.C.a #21	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #24	ENSGT00950000182865.b.a.b.b.b.a #25	ENSGT00940000155814 #26	ENSGT00940000162731 #27	ENSGT00530000063715.b #28	ENSGT01050000244891.C.c.b #29	ENSGT00390000011048 #33	ENSGT00940000159715 #34	ENSGT00940000161898 #35	ENSGT00390000011737	ENSGT00390000011439	ENSGT00940000162114	ENSGT00390000003838	ENSGT00590000083134.a.a
Coquerels sifaka	MODERN SPECIES	87									SUCLA2 (ENSPCOG00000018242) #11	NUDT15 (ENSPCOG00000014340) #12	ITM2B (ENSPCOG00000018351) #15	RB1 (ENSPCOG00000017056) #16	RCBTB2 (ENSPCOG00000021825) #18	FNDC3A (ENSPCOG00000016565) #20	MLNR (ENSPCOG00000024564) #21	CDADC1 (ENSPCOG00000010000) #22	CAB39L (ENSPCOG00000022177) #23	SETDB2 (ENSPCOG00000017644) #24	PHF11 (ENSPCOG00000025902) #25	RCBTB1 (ENSPCOG00000023593) #26	EBPL (ENSPCOG00000017361) #28	KPNA3 (ENSPCOG00000018104) #29	SPRYD7 (ENSPCOG00000014473) #33	KCNRG (ENSPCOG00000018995) #35	DLEU7 (ENSPCOG00000026956)	RNASEH2B (ENSPCOG00000026623)	ENSPCOG00000027037	C13orf42 (ENSPCOG00000021956)	FAM124A (ENSPCOG00000017096)	SERPINE3 (ENSPCOG00000024487)	INTS6 (ENSPCOG00000018512)
Greater bamboo lemur	MODERN SPECIES	716	ENSPSMG00000017359	FOXO1 (ENSPSMG00000017352)	MRPS31 (ENSPSMG00000017347)	SLC25A15 (ENSPSMG00000017332)	HTR2A (ENSPSMG00000017318) #9	SUCLA2 (ENSPSMG00000017268) #11	NUDT15 (ENSPSMG00000017202) #12	MED4 (ENSPSMG00000017195) #13	ITM2B (ENSPSMG00000017177) #15	LPAR6 (ENSPSMG00000017152) #17	RB1 (ENSPSMG00000017129) #16	RCBTB2 (ENSPSMG00000017070) #18	ENSPSMG00000017007	FNDC3A (ENSPSMG00000016962) #20	MLNR (ENSPSMG00000016738) #21	CDADC1 (ENSPSMG00000016735) #22	ENSPSMG00000016725	CAB39L (ENSPSMG00000016717) #23	SETDB2 (ENSPSMG00000016698) #24	PHF11 (ENSPSMG00000016617) #25	RCBTB1 (ENSPSMG00000016600) #26	ARL11 (ENSPSMG00000016576) #27	EBPL (ENSPSMG00000016569) #28	KPNA3 (ENSPSMG00000016546) #29	SPRYD7 (ENSPSMG00000016482) #33	TRIM13 (ENSPSMG00000016458) #34	KCNRG (ENSPSMG00000016450) #35	ENSPSMG00000016440	ENSPSMG00000016385	DLEU7 (ENSPSMG00000016383)	RNASEH2B (ENSPSMG00000016318)
Mouse lemur	MODERN SPECIES	4	NHLRC3 (ENSMICG00000010249)	LHFPL6 (ENSMICG00000001594)	COG6 (ENSMICG00000001598)	FOXO1 (ENSMICG00000028457)	MRPS31 (ENSMICG00000006449)	SLC25A15 (ENSMICG00000007218)	HTR2A (ENSMICG00000043800) #9	SUCLA2 (ENSMICG00000009577) #11	NUDT15 (ENSMICG00000042635) #12	MED4 (ENSMICG00000009590) #13	ITM2B (ENSMICG00000001759) #15	RB1 (ENSMICG00000001747) #16	RCBTB2 (ENSMICG00000001761) #18	FNDC3A (ENSMICG00000009814) #20	MLNR (ENSMICG00000045079) #21	CDADC1 (ENSMICG00000017527) #22	CAB39L (ENSMICG00000017528) #23	SETDB2 (ENSMICG00000012641) #24	PHF11 (ENSMICG00000006622) #25	RCBTB1 (ENSMICG00000006630) #26	ARL11 (ENSMICG00000006637) #27	EBPL (ENSMICG00000006640) #28	KPNA3 (ENSMICG00000006647) #29	SPRYD7 (ENSMICG00000012835) #33	KCNRG (ENSMICG00000042205) #35	DLEU7 (ENSMICG00000031262)	RNASEH2B (ENSMICG00000000528)	ENSMICG00000008092	C13orf42 (ENSMICG00000047001)	FAM124A (ENSMICG00000008100)	SERPINE3 (ENSMICG00000029125)
Bushbaby	MODERN SPECIES	336													ENSOGAG00000013320	FNDC3A (ENSOGAG00000009258) #20	MLNR (ENSOGAG00000027872) #21	CDADC1 (ENSOGAG00000016751) #22	CAB39L (ENSOGAG00000016755) #23	SETDB2 (ENSOGAG00000005339) #24	PHF11 (ENSOGAG00000005342) #25	RCBTB1 (ENSOGAG00000005344) #26	ARL11 (ENSOGAG00000005346) #27	EBPL (ENSOGAG00000005348) #28	ENSOGAG00000031231	THSD1 (ENSOGAG00000012110)	VPS36 (ENSOGAG00000011312)	CKAP2 (ENSOGAG00000008428)	NEK3 (ENSOGAG00000008424)	ENSOGAG00000032365	ALG11 (ENSOGAG00000028195)	ATP7B (ENSOGAG00000006683)	CCDC70 (ENSOGAG00000028299)
Euarchontoglires_A	ANCESTRAL SPECIES	21	ENSGT00710000106860	ENSGT00940000160585	ENSGT00940000159528 #7	ENSGT00390000011864 #8	ENSGT01050000244937.a.a #9	ENSGT00390000010170.a.b #11	ENSGT00390000003338 #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #15	ENSGT00950000183202.b #16	ENSGT01040000240444.A.a.a.a.a #17	ENSGT00940000158925 #18	ENSGT01100000263536.B.c.a #19	ENSGT00940000159319 #20	ENSGT01100000263484.C.a #21	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #24	ENSGT00950000182865.b.a.b.b.b.a #25	ENSGT00940000155814 #26	ENSGT00940000162731 #27	ENSGT00530000063715.b #28	ENSGT01050000244891.C.c.b #29	ENSGT00390000011048 #33	ENSGT00940000159715 #34	ENSGT00940000161898 #35	ENSGT00390000011737	ENSGT00390000011439	ENSGT00940000162114	ENSGT00390000003838	ENSGT00590000083134.a.a
Tree shrew	MODERN SPECIES	6089																CDADC1 (ENSTBEG00000009906) #22	CAB39L (ENSTBEG00000009981) #23
Glires	ANCESTRAL SPECIES	22	ENSGT00710000106860	ENSGT00940000160585	ENSGT00940000159528 #7	ENSGT00390000011864 #8	ENSGT01050000244937.a.a #9	ENSGT00390000010170.a.b #11	ENSGT00390000003338 #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #15	ENSGT00950000183202.b #16	ENSGT01040000240444.A.a.a.a.a #17	ENSGT00940000158925 #18	ENSGT01100000263536.B.c.a #19	ENSGT00940000159319 #20	ENSGT01100000263484.C.a #21	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #24	ENSGT00950000182865.b.a.b.b.b.a #25	ENSGT00940000155814 #26	ENSGT00940000162731 #27	ENSGT00530000063715.b #28	ENSGT01050000244891.C.c.b #29	ENSGT00390000011048 #33	ENSGT00940000159715 #34	ENSGT00940000161898 #35	ENSGT00390000011737	ENSGT00390000011439	ENSGT00940000162114	ENSGT00390000003838	ENSGT00590000083134.a.a
Lagomorpha	ANCESTRAL SPECIES	100			ENSGT00940000159528 #7	ENSGT00390000011864 #8	ENSGT01050000244937.a.a #9	ENSGT00390000010170.a.b #11	ENSGT00390000003338 #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #15	ENSGT00950000183202.b #16	ENSGT01040000240444.A.a.a.a.a #17	ENSGT00940000158925 #18	ENSGT01100000263536.B.c.a #19	ENSGT00940000159319 #20	ENSGT01100000263484.C.a #21	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #24	ENSGT00950000182865.b.a.b.b.b.a #25	ENSGT00940000155814 #26	ENSGT00940000162731 #27	ENSGT00530000063715.b #28	ENSGT01050000244891.C.c.b #29	ENSGT00390000011048 #33	ENSGT00940000159715 #34	ENSGT00940000161898 #35	ENSGT00390000011737	ENSGT00390000011439	ENSGT00390000003838	ENSGT00590000083134.a.a	ENSGT00940000160941
Rabbit	MODERN SPECIES	438	SUCLA2 (ENSOCUG00000025889) #11	NUDT15 (ENSOCUG00000007439) #12	MED4 (ENSOCUG00000012327) #13	ITM2B (ENSOCUG00000025116) #15	RB1 (ENSOCUG00000016404) #16	LPAR6 (ENSOCUG00000002383) #17	RCBTB2 (ENSOCUG00000016428) #18	ENSOCUG00000033452	ENSOCUG00000024145	ENSOCUG00000036809	ENSOCUG00000039273	ENSOCUG00000023872	ENSOCUG00000027072	FNDC3A (ENSOCUG00000014679) #20	MLNR (ENSOCUG00000014737) #21	CDADC1 (ENSOCUG00000014743) #22	CAB39L (ENSOCUG00000008239) #23	ENSOCUG00000009013	SETDB2 (ENSOCUG00000003755) #24	RCBTB1 (ENSOCUG00000003767) #26	PHF11 (ENSOCUG00000003761) #25	ENSOCUG00000006778 #28	ARL11 (ENSOCUG00000003013) #27	KPNA3 (ENSOCUG00000006781) #29	SPRYD7 (ENSOCUG00000027577) #33	TRIM13 (ENSOCUG00000003083) #34	KCNRG (ENSOCUG00000003085) #35	ENSOCUG00000002718	DLEU7 (ENSOCUG00000003938)	RNASEH2B (ENSOCUG00000008904)	ENSOCUG00000033915
Rodentia	ANCESTRAL SPECIES	22	ENSGT00710000106860	ENSGT00940000160585	ENSGT00940000159528 #7	ENSGT00390000011864 #8	ENSGT01050000244937.a.a #9	ENSGT00390000010170.a.b #11	ENSGT00390000003338 #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #15	ENSGT00950000183202.b #16	ENSGT01040000240444.A.a.a.a.a #17	ENSGT00940000158925 #18	ENSGT01100000263536.B.c.a #19	ENSGT00940000159319 #20	ENSGT01100000263484.C.a #21	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #24	ENSGT00950000182865.b.a.b.b.b.a #25	ENSGT00940000155814 #26	ENSGT00940000162731 #27	ENSGT00530000063715.b #28	ENSGT01050000244891.C.c.b #29	ENSGT00390000011048 #33	ENSGT00940000159715 #34	ENSGT00940000161898 #35	ENSGT00390000011737	ENSGT00390000011439	ENSGT00940000162114	ENSGT00390000003838	ENSGT00590000083134.a.a
Rodentia_B	ANCESTRAL SPECIES	25	ENSGT00710000106860	ENSGT00940000160585	ENSGT00940000159528 #7	ENSGT00390000011864 #8	ENSGT01050000244937.a.a #9	ENSGT00390000010170.a.b #11	ENSGT00390000003338 #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #15	ENSGT01040000240444.A.a.a.a.a #17	ENSGT00950000183202.b #16	ENSGT00940000158925 #18	ENSGT01100000263536.B.c.a #19	ENSGT00940000159319 #20	ENSGT01100000263484.C.a #21	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #24	ENSGT00950000182865.b.a.b.b.b.a #25	ENSGT00940000155814 #26	ENSGT00940000162731 #27	ENSGT00530000063715.b #28	ENSGT01050000244891.C.c.b #29	ENSGT00390000011048 #33	ENSGT00940000159715 #34	ENSGT00940000161898 #35	ENSGT00390000011737	ENSGT00390000011439	ENSGT00940000162114	ENSGT00390000003838	ENSGT00590000083134.a.a
Kangaroo rat	MODERN SPECIES	320	ENSDORG00000024657	Lrch1 (ENSDORG00000013992) #7	Esd (ENSDORG00000013997) #8	Htr2a (ENSDORG00000029019) #9	Sucla2 (ENSDORG00000010319) #11	Nudt15 (ENSDORG00000003751) #12	Med4 (ENSDORG00000024480) #13	Itm2b (ENSDORG00000025543) #15	Rb1 (ENSDORG00000013995) #16	Lpar6 (ENSDORG00000013998) #17	Rcbtb2 (ENSDORG00000013999) #18	ENSDORG00000016215 #19	ENSDORG00000029762	Fndc3a (ENSDORG00000000383) #20	ENSDORG00000023605 #21	Cdadc1 (ENSDORG00000000386) #22	Ift88 (ENSDORG00000001573)	Cryl1 (ENSDORG00000011355)	ENSDORG00000030047	Gjb6 (ENSDORG00000015151)	Gjb2 (ENSDORG00000023482)	Gja3 (ENSDORG00000012415)	Zmym2 (ENSDORG00000014720)	ENSDORG00000024933	Pspc1 (ENSDORG00000016050)	ENSDORG00000023318	Parp4 (ENSDORG00000029090)	ENSDORG00000025901	Cenpj (ENSDORG00000016674)	Atp12a (ENSDORG00000001519)	ENSDORG00000027898
Myomorpha	ANCESTRAL SPECIES	46																ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #24	ENSGT00950000182865.b.a.b.b.b.a #25	ENSGT00940000155814 #26	ENSGT00940000162731 #27	ENSGT00530000063715.b #28	ENSGT01050000244891.C.c.b #29	ENSGT00390000011048 #33	ENSGT00940000159715 #34	ENSGT00940000161898 #35	ENSGT00390000011737	ENSGT00390000011439	ENSGT00940000162114	ENSGT00390000003838	ENSGT00590000083134.a.a
Lesser Egyptian jerboa	MODERN SPECIES	73																Cdadc1 (ENSJJAG00000015627) #22	Cab39l (ENSJJAG00000014207) #23	Setdb2 (ENSJJAG00000011079) #24	ENSJJAG00000017145 #25	Rcbtb1 (ENSJJAG00000016110) #26	ENSJJAG00000013107	Arl11 (ENSJJAG00000001803) #27	Ebpl (ENSJJAG00000014825) #28	Kpna3 (ENSJJAG00000017828) #29	ENSJJAG00000018077 #33	Trim13 (ENSJJAG00000012858) #34	Dleu7 (ENSJJAG00000015749)	Rnaseh2b (ENSJJAG00000013335)	Gm4131 (ENSJJAG00000020940)	Fam124a (ENSJJAG00000017056)	Serpine3 (ENSJJAG00000018445)
Muroidea	ANCESTRAL SPECIES	25	ENSGT00940000160956	ENSGT00840000130852	ENSGT00940000159187	ENSGT00390000016695	ENSGT00940000153259.a.a.b	ENSGT00950000183171.B	ENSGT00730000111659	ENSGT00940000154936.qb	ENSGT00940000154103.a	ENSGT00940000166713	ENSGT00530000063529.A	ENSGT00940000158055	ENSGT00730000111111	ENSGT00940000157332	ENSGT00940000157443	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #24	ENSGT00950000182865.b.a.b.b.b.a #25	ENSGT00940000155814 #26	ENSGT00940000162731 #27	ENSGT00530000063715.b #28	ENSGT01050000244891.C.c.b #29	ENSGT00390000011048 #33	ENSGT00940000159715 #34	ENSGT00940000161898 #35	ENSGT00390000011737	ENSGT00390000011439	ENSGT00940000162114	ENSGT00390000003838	ENSGT00590000083134.a.a
Upper Galilee mountains blind mole rat	MODERN SPECIES	1877	ENSNGAG00000020670	Sgcg (ENSNGAG00000014500)	Sacs (ENSNGAG00000018196)	Tnfrsf19 (ENSNGAG00000001020)	Mipep (ENSNGAG00000018168)	ENSNGAG00000002512	C1qtnf9 (ENSNGAG00000019211)	ENSNGAG00000013640	ENSNGAG00000019843	Amer2 (ENSNGAG00000018129)	Mtmr6 (ENSNGAG00000010192)	Gm49336 (ENSNGAG00000014286)	ENSNGAG00000015895	ENSNGAG00000013901	Shisa2 (ENSNGAG00000011290)	Cdadc1 (ENSNGAG00000002869) #22	Cab39l (ENSNGAG00000000478) #23	Setdb2 (ENSNGAG00000013911) #24	Rcbtb1 (ENSNGAG00000014551) #26	Arl11 (ENSNGAG00000004637) #27	Ebpl (ENSNGAG00000006650) #28	Kpna3 (ENSNGAG00000017215) #29	Spryd7 (ENSNGAG00000016929) #33	Trim13 (ENSNGAG00000012202) #34	Kcnrg (ENSNGAG00000012047) #35	Dleu7 (ENSNGAG00000000600)	ENSNGAG00000000615	Gucy1b2 (ENSNGAG00000005460)	Gm4131 (ENSNGAG00000018345)	Fam124a (ENSNGAG00000017750)	Serpine3 (ENSNGAG00000001093)
Muroidea_A	ANCESTRAL SPECIES	10	ENSGT01050000244891.C.c.b #29	ENSGT00530000063715.b #28	ENSGT00940000162731 #27	ENSGT00940000159187	ENSGT00390000016695	ENSGT00940000153259.a.a.b	ENSGT00950000183171.B	ENSGT00730000111659	ENSGT00940000154936.qb	ENSGT00940000154103.a	ENSGT00530000063529.A	ENSGT00940000158055	ENSGT00730000111111	ENSGT00940000157332	ENSGT00940000157443	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #24	ENSGT00950000182865.b.a.b.b.b.a #25	ENSGT00940000155814 #26	ENSGT00840000130852.b	ENSGT01050000247125	ENSGT00840000130852.a.a	ENSGT00940000160956	ENSGT00950000183079.A.b.c.b	ENSGT00940000153716.A	ENSGT00390000008171	ENSGT00500000045005	ENSGT00390000003152.j	ENSGT00940000159161	ENSGT00940000153139.A
Cricetidae	ANCESTRAL SPECIES	15	ENSGT01050000244891.C.c.b #29	ENSGT00530000063715.b #28	ENSGT00940000162731 #27	ENSGT00940000159187	ENSGT00390000016695	ENSGT00940000153259.a.a.b	ENSGT00950000183171.B	ENSGT00730000111659	ENSGT00940000154936.qb	ENSGT00940000154103.a	ENSGT00530000063529.A	ENSGT00940000158055	ENSGT00730000111111	ENSGT00940000157332	ENSGT00940000157443	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #24	ENSGT00950000182865.b.a.b.b.b.a #25	ENSGT00940000155814 #26	ENSGT00840000130852.b	ENSGT01050000247125	ENSGT00840000130852.a.a	ENSGT00940000160956	ENSGT00950000183079.A.b.c.b	ENSGT00940000153716.A	ENSGT00390000008171	ENSGT00500000045005	ENSGT00390000003152.j	ENSGT00940000159161	ENSGT00940000153139.A
Cricetidae_B	ANCESTRAL SPECIES	11	ENSGT01050000244891.C.c.b #29	ENSGT00530000063715.b #28	ENSGT00940000162731 #27	ENSGT00940000159187	ENSGT00390000016695	ENSGT00940000153259.a.a.b	ENSGT00950000183171.B	ENSGT00730000111659	ENSGT00940000154936.qb	ENSGT00940000154103.a	ENSGT00530000063529.A	ENSGT00940000158055	ENSGT00730000111111	ENSGT00940000157332	ENSGT00940000157443	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #24	ENSGT00950000182865.b.a.b.b.b.a #25	ENSGT00940000155814 #26	ENSGT00840000130852.b	ENSGT00840000130852.a.a	ENSGT00940000160956	ENSGT00950000183079.A.b.c.b	ENSGT00940000153716.A	ENSGT00390000008171	ENSGT00500000045005	ENSGT00390000003152.j	ENSGT00940000159161	ENSGT00940000153139.A	ENSGT00390000016366
Northern American deer mouse	MODERN SPECIES	22	ENSPEMG00000030665	Sgcg (ENSPEMG00000019438)	Sacs (ENSPEMG00000000064)	ENSPEMG00000024354	Tnfrsf19 (ENSPEMG00000008508)	Mipep (ENSPEMG00000020216)	ENSPEMG00000027608	C1qtnf9 (ENSPEMG00000019616)	Spata13 (ENSPEMG00000020262)	Amer2 (ENSPEMG00000025065)	Mtmr6 (ENSPEMG00000019883)	Gm49336 (ENSPEMG00000019398)	ENSPEMG00000025963	Atp8a2 (ENSPEMG00000019433)	Shisa2 (ENSPEMG00000030541)	Cdadc1 (ENSPEMG00000020295) #22	Cab39l (ENSPEMG00000012244) #23	Setdb2 (ENSPEMG00000020697) #24	ENSPEMG00000020517 #25	Rcbtb1 (ENSPEMG00000012943) #26	ENSPEMG00000015984	Fgf9 (ENSPEMG00000028908)	Micu2 (ENSPEMG00000013668)	Zdhhc20 (ENSPEMG00000020348)	Mrpl57 (ENSPEMG00000003727)	Ska3 (ENSPEMG00000020939)	ENSPEMG00000030110	Lats2 (ENSPEMG00000000178)	Xpo4 (ENSPEMG00000017255)	Eef1akmt1 (ENSPEMG00000031126)	Il17d (ENSPEMG00000022121)
Prairie vole	MODERN SPECIES	4	Arl11 (ENSMOCG00000006454) #27	Sgcg (ENSMOCG00000021418)	Sacs (ENSMOCG00000006049)	Tnfrsf19 (ENSMOCG00000018683)	Mipep (ENSMOCG00000020940)	C1qtnf9 (ENSMOCG00000000316)	ENSMOCG00000000624	Spata13 (ENSMOCG00000001538)	Amer2 (ENSMOCG00000019134)	Mtmr6 (ENSMOCG00000022575)	Gm49336 (ENSMOCG00000003936)	ENSMOCG00000014830	ENSMOCG00000019987	Atp8a2 (ENSMOCG00000015692)	Shisa2 (ENSMOCG00000020664)	Cdadc1 (ENSMOCG00000002433) #22	Cab39l (ENSMOCG00000016772) #23	Setdb2 (ENSMOCG00000021987) #24	ENSMOCG00000008534 #25	ENSMOCG00000006162	Rcbtb1 (ENSMOCG00000015644) #26	ENSMOCG00000021827	ENSMOCG00000022640	Fgf9 (ENSMOCG00000023005)	Micu2 (ENSMOCG00000007162)	ENSMOCG00000016347	Zdhhc20 (ENSMOCG00000020906)	Mrpl57 (ENSMOCG00000014838)	Ska3 (ENSMOCG00000017435)	ENSMOCG00000018977	ENSMOCG00000019590
Cricetinae	ANCESTRAL SPECIES	18	ENSGT01050000244891.C.c.b #29	ENSGT00530000063715.b #28	ENSGT00940000162731 #27	ENSGT00940000159187	ENSGT00390000016695	ENSGT00940000153259.a.a.b	ENSGT00950000183171.B	ENSGT00730000111659	ENSGT00940000154936.qb	ENSGT00940000154103.a	ENSGT00530000063529.A	ENSGT00940000158055	ENSGT00730000111111	ENSGT00940000157332	ENSGT00940000157443	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #24	ENSGT00950000182865.b.a.b.b.b.a #25	ENSGT00940000155814 #26	ENSGT00840000130852.b	ENSGT01050000247125	ENSGT00940000160956	ENSGT00950000183079.A.b.c.b	ENSGT00940000153716.A	ENSGT00390000008171	ENSGT00500000045005	ENSGT00390000003152.j	ENSGT00940000159161	ENSGT00940000153139.A	ENSGT00390000016366
Golden Hamster	MODERN SPECIES	670	Rnaseh2b (ENSMAUG00000016520)	ENSMAUG00000009681 #35	Trim13 (ENSMAUG00000003724) #34	Spryd7 (ENSMAUG00000017680) #33	Kpna3 (ENSMAUG00000020387) #29	Sgcg (ENSMAUG00000019618)	Sacs (ENSMAUG00000006270)	Tnfrsf19 (ENSMAUG00000019786)	Mipep (ENSMAUG00000003876)	C1qtnf9 (ENSMAUG00000006985)	Amer2 (ENSMAUG00000007607)	Mtmr6 (ENSMAUG00000015618)	ENSMAUG00000010191	ENSMAUG00000016296	Shisa2 (ENSMAUG00000018919)	Cdadc1 (ENSMAUG00000016628) #22	Cab39l (ENSMAUG00000021570) #23	Setdb2 (ENSMAUG00000012871) #24	ENSMAUG00000010572 #25	Rcbtb1 (ENSMAUG00000019433) #26	Fgf9 (ENSMAUG00000019224)	Micu2 (ENSMAUG00000012604)	Zdhhc20 (ENSMAUG00000001184)	Mrpl57 (ENSMAUG00000012206)	Lats2 (ENSMAUG00000020573)	ENSMAUG00000004111	Eef1akmt1 (ENSMAUG00000000714)	Ift88 (ENSMAUG00000013897)	Cryl1 (ENSMAUG00000008825)	Gjb6 (ENSMAUG00000010441)	Gjb2 (ENSMAUG00000021056)
Chinese hamster chok1gshd	MODERN SPECIES	3	Ebpl (ENSCGRG00001001118) #28	Arl11 (ENSCGRG00001010023) #27	Sgcg (ENSCGRG00001017405)	Sacs (ENSCGRG00001022048)	Tnfrsf19 (ENSCGRG00001001233)	Mipep (ENSCGRG00001017795)	ENSCGRG00001024481	C1qtnf9 (ENSCGRG00001022548)	Spata13 (ENSCGRG00001006938)	Amer2 (ENSCGRG00001007624)	Mtmr6 (ENSCGRG00001014238)	Gm49336 (ENSCGRG00001015740)	ENSCGRG00001018603	Atp8a2 (ENSCGRG00001009592)	Shisa2 (ENSCGRG00001022075)	Cdadc1 (ENSCGRG00001023418) #22	Cab39l (ENSCGRG00001018025) #23	Setdb2 (ENSCGRG00001011194) #24	ENSCGRG00001017420 #25	ENSCGRG00001017298 #26	ENSCGRG00001016056	ENSCGRG00001000235	Fgf9 (ENSCGRG00001000618)	Micu2 (ENSCGRG00001019591)	Zdhhc20 (ENSCGRG00001016155)	Mrpl57 (ENSCGRG00001003685)	Ska3 (ENSCGRG00001020376)	ENSCGRG00001017316	Lats2 (ENSCGRG00001020388)	Xpo4 (ENSCGRG00001004627)	Eef1akmt1 (ENSCGRG00001016674)
Murinae	ANCESTRAL SPECIES	16	ENSGT01050000244891.C.c.b #29	ENSGT00530000063715.b #28	ENSGT00940000162731 #27	ENSGT00940000159187	ENSGT00390000016695	ENSGT00940000153259.a.a.b	ENSGT00950000183171.B	ENSGT00730000111659	ENSGT00940000154936.qb	ENSGT00940000154103.a	ENSGT00530000063529.A	ENSGT00940000158055	ENSGT00730000111111	ENSGT00940000157332	ENSGT00940000157443	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #24	ENSGT00950000182865.b.a.b.b.b.a.e #25	ENSGT00950000182865.b.a.b.b.b.a.f #25	ENSGT00940000155814 #26	ENSGT00840000130852.b	ENSGT01050000247125	ENSGT00840000130852.a.a	ENSGT00940000160956	ENSGT00950000183079.A.b.c.b	ENSGT00940000153716.A	ENSGT00390000008171	ENSGT00500000045005	ENSGT00390000003152.j	ENSGT00940000159161
Mus	ANCESTRAL SPECIES	8	ENSGT00530000063715.b #28	ENSGT00940000162731 #27	ENSGT00940000159187	ENSGT00390000016695	ENSGT00940000153259.a.a.b	ENSGT00950000183171.B	ENSGT00940000154936.qb	ENSGT00730000111659	ENSGT00940000154103.a	ENSGT00530000063529.A	ENSGT00940000158055	ENSGT00730000111111	ENSGT00860000136284	ENSGT00940000157332	ENSGT00940000157443	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #24	ENSGT00950000182865.b.a.b.b.b.a.e.a #25	ENSGT00950000182865.b.a.b.b.b.a.f #25	ENSGT00940000155814 #26	ENSGT00840000130852.b	ENSGT00840000130852.a.a	ENSGT00940000160956	ENSGT00950000183079.A.b.c.b	ENSGT00940000153716.A	ENSGT00390000008171	ENSGT00500000045005	ENSGT00390000003152.j	ENSGT00940000159161	ENSGT00940000153139.A
Mus_A	ANCESTRAL SPECIES	12	ENSGT00530000063715.b #28	ENSGT00940000162731 #27	ENSGT00940000159187	ENSGT00390000016695	ENSGT00940000153259.a.a.b	ENSGT00950000183171.B	ENSGT00940000154936.qb	ENSGT00730000111659	ENSGT00940000154103.a	ENSGT00530000063529.A	ENSGT00940000158055	ENSGT00730000111111	ENSGT00860000136284	ENSGT00940000157332	ENSGT00940000157443	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #24	ENSGT00950000182865.b.a.b.b.b.a.e.a #25	ENSGT00950000182865.b.a.b.b.b.a.f.b #25	ENSGT00940000155814 #26	ENSGT00840000130852.b	ENSGT00840000130852.a.a	ENSGT00940000160956	ENSGT00950000183079.A.b.c.b	ENSGT00940000153716.A	ENSGT00390000008171	ENSGT00500000045005	ENSGT00390000003152.j	ENSGT00940000159161	ENSGT00940000153139.A
Mus_B	ANCESTRAL SPECIES	11	ENSGT00530000063715.b #28	ENSGT00940000162731 #27	ENSGT00940000159187	ENSGT00390000016695	ENSGT00940000153259.a.a.b	ENSGT00950000183171.B	ENSGT00940000154936.qb	ENSGT00730000111659	ENSGT00940000154103.a	ENSGT00530000063529.A	ENSGT00940000158055	ENSGT00730000111111	ENSGT00860000136284	ENSGT00940000157332	ENSGT00940000157443	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #24	ENSGT00950000182865.b.a.b.b.b.a.e.a #25	ENSGT00950000182865.b.a.b.b.b.a.f.b #25	ENSGT00940000155814 #26	ENSGT00840000130852.b	ENSGT00840000130852.a.a	ENSGT00940000160956	ENSGT00950000183079.A.b.c.b	ENSGT00940000153716.A	ENSGT00390000008171	ENSGT00500000045005	ENSGT00390000003152.j	ENSGT00940000159161	ENSGT00940000153139.A
Mus_C	ANCESTRAL SPECIES	20	ENSGT00530000063715.b #28	ENSGT00940000162731 #27	ENSGT00940000159187	ENSGT00390000016695	ENSGT00940000153259.a.a.b	ENSGT00950000183171.B	ENSGT00940000154936.qb	ENSGT00730000111659	ENSGT00940000154103.a	ENSGT00530000063529.A	ENSGT00940000158055	ENSGT00730000111111	ENSGT00860000136284	ENSGT00940000157332	ENSGT00940000157443	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #24	ENSGT00950000182865.b.a.b.b.b.a.e.a #25	ENSGT00950000182865.b.a.b.b.b.a.f.b #25	ENSGT00940000155814 #26	ENSGT00840000130852.b	ENSGT00840000130852.a.a	ENSGT00940000160956	ENSGT00950000183079.A.b.c.b	ENSGT00940000153716.A	ENSGT00390000008171	ENSGT00500000045005	ENSGT00390000003152.j	ENSGT00940000159161	ENSGT00940000153139.A
Steppe mouse	MODERN SPECIES	3236	Sacs (ENSMSIG00000024830)	ENSMSIG00000024904	ENSMSIG00000024911	Tnfrsf19 (ENSMSIG00000024914)	Mipep (ENSMSIG00000024958)	C1qtnf9 (ENSMSIG00000024999)	ENSMSIG00000025002	Spata13 (ENSMSIG00000025007)	ENSMSIG00000025098	Mtmr6 (ENSMSIG00000025110)	Gm49336 (ENSMSIG00000025212)	Atp8a2 (ENSMSIG00000025342)	ENSMSIG00000025497	ENSMSIG00000025501	Shisa2 (ENSMSIG00000025508)	Cdadc1 (ENSMSIG00000025526) #22	Cab39l (ENSMSIG00000026112) #23	ENSMSIG00000026181 #24	ENSMSIG00000026348
spretus	MODERN SPECIES	5	Kpna3 (MGP_SPRETEiJ_G0020276) #29	Ebpl (MGP_SPRETEiJ_G0020275) #28	Arl11 (MGP_SPRETEiJ_G0020274) #27	Sgcg (MGP_SPRETEiJ_G0020273)	Sacs (MGP_SPRETEiJ_G0020272)	Tnfrsf19 (MGP_SPRETEiJ_G0020271)	Mipep (MGP_SPRETEiJ_G0020270)	C1qtnf9 (MGP_SPRETEiJ_G0020269)	Spata13 (MGP_SPRETEiJ_G0020268)	Amer2 (MGP_SPRETEiJ_G0020267)	Mtmr6 (MGP_SPRETEiJ_G0020266)	Gm49336 (MGP_SPRETEiJ_G0020265)	MGP_SPRETEiJ_G0020264	Atp8a2 (MGP_SPRETEiJ_G0020263)	Shisa2 (MGP_SPRETEiJ_G0020262)	Cdadc1 (MGP_SPRETEiJ_G0020261) #22	Cab39l (MGP_SPRETEiJ_G0020260) #23	Setdb2 (MGP_SPRETEiJ_G0020259) #24	MGP_SPRETEiJ_G0020258 #25	MGP_SPRETEiJ_G0020257 #25	MGP_SPRETEiJ_G0020256 #26	MGP_SPRETEiJ_G0020255	1700129C05Rik (MGP_SPRETEiJ_G0020254)	Fgf9 (MGP_SPRETEiJ_G0020253)	Micu2 (MGP_SPRETEiJ_G0020252)	Zdhhc20 (MGP_SPRETEiJ_G0020251)	Mrpl57 (MGP_SPRETEiJ_G0020250)	Ska3 (MGP_SPRETEiJ_G0020249)	MGP_SPRETEiJ_G0020248	Lats2 (MGP_SPRETEiJ_G0020247)	Xpo4 (MGP_SPRETEiJ_G0020246)
Mouse	MODERN SPECIES	5	Spryd7 (ENSMUSG00000021930) #33	Kpna3 (ENSMUSG00000021929) #29	Ebpl (ENSMUSG00000021928) #28	Arl11 (ENSMUSG00000043157) #27	Sgcg (ENSMUSG00000035296)	Sacs (ENSMUSG00000048279)	Tnfrsf19 (ENSMUSG00000060548)	Mipep (ENSMUSG00000021993)	C1qtnf9 (ENSMUSG00000071347)	Spata13 (ENSMUSG00000021990)	Amer2 (ENSMUSG00000021986)	Mtmr6 (ENSMUSG00000021987)	Gm49336 (ENSMUSG00000114797)	Atp8a2 (ENSMUSG00000021983)	Shisa2 (ENSMUSG00000044461)	Cdadc1 (ENSMUSG00000021982) #22	Cab39l (ENSMUSG00000021981) #23	Setdb2 (ENSMUSG00000071350) #24	Phf11c (ENSMUSG00000091144) #25	Phf11d (ENSMUSG00000068245) #25	Phf11b (ENSMUSG00000091649) #25	Phf11a (ENSMUSG00000044703) #25	Rcbtb1 (ENSMUSG00000035469) #26	1700129C05Rik (ENSMUSG00000021977)	Fgf9 (ENSMUSG00000021974)	Micu2 (ENSMUSG00000021973)	Zdhhc20 (ENSMUSG00000021969)	Mrpl57 (ENSMUSG00000021967)	Ska3 (ENSMUSG00000021965)	Sap18 (ENSMUSG00000021963)	Lats2 (ENSMUSG00000021959)
Ryukyu mouse	MODERN SPECIES	5	Kpna3 (MGP_CAROLIEiJ_G0019384) #29	Ebpl (MGP_CAROLIEiJ_G0019383) #28	Arl11 (MGP_CAROLIEiJ_G0019382) #27	Sgcg (MGP_CAROLIEiJ_G0019381)	Sacs (MGP_CAROLIEiJ_G0019380)	Tnfrsf19 (MGP_CAROLIEiJ_G0019379)	Mipep (MGP_CAROLIEiJ_G0019378)	C1qtnf9 (MGP_CAROLIEiJ_G0019377)	Spata13 (MGP_CAROLIEiJ_G0019376)	Amer2 (MGP_CAROLIEiJ_G0019375)	Mtmr6 (MGP_CAROLIEiJ_G0019374)	Gm49336 (MGP_CAROLIEiJ_G0019373)	MGP_CAROLIEiJ_G0019372	Atp8a2 (MGP_CAROLIEiJ_G0019371)	Shisa2 (MGP_CAROLIEiJ_G0019370)	Cdadc1 (MGP_CAROLIEiJ_G0019369) #22	Cab39l (MGP_CAROLIEiJ_G0019368) #23	Setdb2 (MGP_CAROLIEiJ_G0019367) #24	MGP_CAROLIEiJ_G0019366 #25	MGP_CAROLIEiJ_G0019362 ##25	MGP_CAROLIEiJ_G0019365 #25	MGP_CAROLIEiJ_G0019363 #25	MGP_CAROLIEiJ_G0019364 #25	MGP_CAROLIEiJ_G0019361 #26	MGP_CAROLIEiJ_G0019360	1700129C05Rik (MGP_CAROLIEiJ_G0019359)	Fgf9 (MGP_CAROLIEiJ_G0019358)	Micu2 (MGP_CAROLIEiJ_G0019357)	Zdhhc20 (MGP_CAROLIEiJ_G0019356)	Ska3 (MGP_CAROLIEiJ_G0019355)	MGP_CAROLIEiJ_G0019354
Shrew mouse	MODERN SPECIES	21	Kpna3 (MGP_PahariEiJ_G0030402) #29	Ebpl (MGP_PahariEiJ_G0030401) #28	Arl11 (MGP_PahariEiJ_G0030400) #27	Sgcg (MGP_PahariEiJ_G0030399)	Sacs (MGP_PahariEiJ_G0030398)	Tnfrsf19 (MGP_PahariEiJ_G0030397)	Mipep (MGP_PahariEiJ_G0030396)	C1qtnf9 (MGP_PahariEiJ_G0030395)	Spata13 (MGP_PahariEiJ_G0030394)	Amer2 (MGP_PahariEiJ_G0030393)	Mtmr6 (MGP_PahariEiJ_G0030392)	Gm49336 (MGP_PahariEiJ_G0030391)	MGP_PahariEiJ_G0030390	Atp8a2 (MGP_PahariEiJ_G0030389)	Shisa2 (MGP_PahariEiJ_G0030388)	Cdadc1 (MGP_PahariEiJ_G0030387) #22	Cab39l (MGP_PahariEiJ_G0030386) #23	Setdb2 (MGP_PahariEiJ_G0030385) #24	MGP_PahariEiJ_G0030384 #25	MGP_PahariEiJ_G0030383 #25	MGP_PahariEiJ_G0030382 #25	MGP_PahariEiJ_G0030381 #25	Rcbtb1 (MGP_PahariEiJ_G0030380) #26	MGP_PahariEiJ_G0030379	1700129C05Rik (MGP_PahariEiJ_G0030378)	Fgf9 (MGP_PahariEiJ_G0030377)	Micu2 (MGP_PahariEiJ_G0030376)	Zdhhc20 (MGP_PahariEiJ_G0030375)	Mrpl57 (MGP_PahariEiJ_G0030374)	Ska3 (MGP_PahariEiJ_G0030373)	MGP_PahariEiJ_G0030372
Rat	MODERN SPECIES	6	Arl11 (ENSRNOG00000014653) #27	LOC103693662 (ENSRNOG00000063996)	Sgcg (ENSRNOG00000014603)	AABR07018124.1 (ENSRNOG00000042281)	Sacs (ENSRNOG00000014509)	Tnfrsf19 (ENSRNOG00000014265)	Mipep (ENSRNOG00000013876)	ENSRNOG00000068540	C1qtnf9 (ENSRNOG00000013793)	Spata13 (ENSRNOG00000013707)	Amer2 (ENSRNOG00000013623)	Mtmr6 (ENSRNOG00000012918)	Nup58 (ENSRNOG00000012644)	Atp8a2 (ENSRNOG00000008053)	Shisa2 (ENSRNOG00000012521)	Cdadc1 (ENSRNOG00000012209) #22	Cab39l (ENSRNOG00000011603) #23	LOC108348241 (ENSRNOG00000069746) #25	Setdb2 (ENSRNOG00000021680) #24	ENSRNOG00000065100 #25	Phf11 (ENSRNOG00000053891) #25	Phf11b (ENSRNOG00000064184) #25	ENSRNOG00000067681	Rcbtb1 (ENSRNOG00000021712) #26	RGD1563302 (ENSRNOG00000038917)	ENSRNOG00000064315	LOC691850 (ENSRNOG00000053522)	Fgf9 (ENSRNOG00000011471)	Micu2 (ENSRNOG00000011168)	Zdhhc20 (ENSRNOG00000011024)	Mrpl57 (ENSRNOG00000062588)
Rodentia_A	ANCESTRAL SPECIES	22	ENSGT00710000106860	ENSGT00940000160585	ENSGT00940000159528 #7	ENSGT00390000011864 #8	ENSGT01050000244937.a.a #9	ENSGT00390000010170.a.b #11	ENSGT00390000003338 #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #15	ENSGT00950000183202.b #16	ENSGT01040000240444.A.a.a.a.a #17	ENSGT00940000158925 #18	ENSGT01100000263536.B.c.a #19	ENSGT00940000159319 #20	ENSGT01100000263484.C.a #21	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #24	ENSGT00950000182865.b.a.b.b.b.a #25	ENSGT00940000155814 #26	ENSGT00940000162731 #27	ENSGT00530000063715.b #28	ENSGT01050000244891.C.c.b #29	ENSGT00390000011048 #33	ENSGT00940000159715 #34	ENSGT00940000161898 #35	ENSGT00390000011737	ENSGT00390000011439	ENSGT00940000162114	ENSGT00390000003838	ENSGT00590000083134.a.a
Hystricomorpha	ANCESTRAL SPECIES	25	ENSGT00710000106860	ENSGT00940000160585	ENSGT00940000159528 #7	ENSGT00390000011864.y #8	ENSGT01050000244937.a.a #9	ENSGT00390000010170.a.b #11	ENSGT00390000003338 #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #15	ENSGT00950000183202.b #16	ENSGT01040000240444.A.a.a.a.a #17	ENSGT00940000158925 #18	ENSGT01100000263536.B.c.a #19	ENSGT00940000159319 #20	ENSGT01100000263484.C.a #21	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #24	ENSGT00950000182865.b.a.b.b.b.a #25	ENSGT00940000155814 #26	ENSGT00940000162731 #27	ENSGT00530000063715.b #28	ENSGT01050000244891.C.c.b #29	ENSGT00390000011048 #33	ENSGT00940000159715 #34	ENSGT00390000011737	ENSGT00390000011439	ENSGT00940000162114	ENSGT00390000003838	ENSGT00590000083134.a.a	ENSGT00940000160941
Hystricomorpha_a	ANCESTRAL SPECIES	21	ENSGT00710000106860	ENSGT00940000160585	ENSGT00940000159528 #7	ENSGT00390000011864.y #8	ENSGT01050000244937.a.a #9	ENSGT00390000010170.a.b #11	ENSGT00390000003338 #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #15	ENSGT00950000183202.b #16	ENSGT01040000240444.A.a.a.a.a #17	ENSGT00940000158925 #18	ENSGT01100000263536.B.c.a #19	ENSGT00940000159319 #20	ENSGT01100000263484.C.a #21	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #24	ENSGT00950000182865.b.a.b.b.b.a #25	ENSGT00940000155814 #26	ENSGT00940000162731 #27	ENSGT00530000063715.b #28	ENSGT01050000244891.C.c.b #29	ENSGT00390000011048 #33	ENSGT00940000159715 #34	ENSGT00390000011737	ENSGT00390000011439	ENSGT00940000162114	ENSGT00390000003838	ENSGT00590000083134.a.a	ENSGT00940000160941
Guinea pig	MODERN SPECIES	6	LCP1 (ENSCPOG00000001937)	RUBCNL (ENSCPOG00000008458)	LRCH1 (ENSCPOG00000011077) #7	ESD (ENSCPOG00000011089) #8	HTR2A (ENSCPOG00000038918) #9	SUCLA2 (ENSCPOG00000014961) #11	ENSCPOG00000038770 #12	ENSCPOG00000015058 #12	MED4 (ENSCPOG00000039834) #13	ITM2B (ENSCPOG00000039088) #15	RB1 (ENSCPOG00000008683) #16	LPAR6 (ENSCPOG00000036002) #17	RCBTB2 (ENSCPOG00000008702) #18	CYSLTR2 (ENSCPOG00000001597) #19	FNDC3A (ENSCPOG00000003704) #20	CDADC1 (ENSCPOG00000003715) #22	CAB39L (ENSCPOG00000003721) #23	SETDB2 (ENSCPOG00000002194) #24	PHF11 (ENSCPOG00000002197) #25	RCBTB1 (ENSCPOG00000002199) #26	ARL11 (ENSCPOG00000040608) #27	EBPL (ENSCPOG00000038144) #28	KPNA3 (ENSCPOG00000004628) #29	SPRYD7 (ENSCPOG00000032352) #33	TRIM13 (ENSCPOG00000001929) #34	DLEU7 (ENSCPOG00000030950)	RNASEH2B (ENSCPOG00000032527)	ENSCPOG00000009047	C13orf42 (ENSCPOG00000034338)
Hystricomorpha_b	ANCESTRAL SPECIES	48		ENSGT00940000160585	ENSGT00940000159528 #7	ENSGT00390000011864.y #8	ENSGT01050000244937.a.a #9	ENSGT00390000010170.a.b #11	ENSGT00390000003338 #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #15	ENSGT00950000183202.b #16	ENSGT01040000240444.A.a.a.a.a #17	ENSGT00940000158925 #18	ENSGT01100000263536.B.c.a #19	ENSGT00940000159319 #20	ENSGT01100000263484.C.a #21	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #24	ENSGT00950000182865.b.a.b.b.b.a #25	ENSGT00940000155814 #26	ENSGT00940000162731 #27	ENSGT00530000063715.b #28	ENSGT01050000244891.C.c.b #29	ENSGT00390000011048 #33	ENSGT00940000159715 #34	ENSGT00390000011737	ENSGT00390000011439	ENSGT00940000162114	ENSGT00390000003838	ENSGT00590000083134.a.a	ENSGT00940000160941
Long-tailed chinchilla	MODERN SPECIES	138	RUBCNL (ENSCLAG00000003683)	LRCH1 (ENSCLAG00000004349) #7	ESD (ENSCLAG00000005889) #8	HTR2A (ENSCLAG00000006315) #9	ENSCLAG00000010853	SUCLA2 (ENSCLAG00000007422) #11	NUDT15 (ENSCLAG00000008172) #12	MED4 (ENSCLAG00000008512) #13	ITM2B (ENSCLAG00000006439) #15	RB1 (ENSCLAG00000006971) #16	LPAR6 (ENSCLAG00000017673) #17	RCBTB2 (ENSCLAG00000008746) #18	CYSLTR2 (ENSCLAG00000004826) #19	FNDC3A (ENSCLAG00000004945) #20	MLNR (ENSCLAG00000005338) #21	CDADC1 (ENSCLAG00000003253) #22	CAB39L (ENSCLAG00000006518) #23	SETDB2 (ENSCLAG00000007348) #24	ENSCLAG00000009026	PHF11 (ENSCLAG00000003316) #25	RCBTB1 (ENSCLAG00000004132) #26	ARL11 (ENSCLAG00000005195) #27	EBPL (ENSCLAG00000003551) #28	KPNA3 (ENSCLAG00000003858) #29	SPRYD7 (ENSCLAG00000005061) #33	TRIM13 (ENSCLAG00000005696) #34	DLEU7 (ENSCLAG00000005848)	RNASEH2B (ENSCLAG00000003517)	C13orf42 (ENSCLAG00000003677)	FAM124A (ENSCLAG00000003727)	SERPINE3 (ENSCLAG00000003869)
Degu	MODERN SPECIES	92	ENSODEG00000005873 #11	ENSODEG00000006404	NUDT15 (ENSODEG00000006598) #12	ENSODEG00000006829 #13	ENSODEG00000005765 #15	RB1 (ENSODEG00000007075) #16	LPAR6 (ENSODEG00000019536) #17	RCBTB2 (ENSODEG00000007840) #18	ENSODEG00000006804	ENSODEG00000019363	CYSLTR2 (ENSODEG00000005345) #19	ENSODEG00000005498	FNDC3A (ENSODEG00000005882) #20	ENSODEG00000019344	MLNR (ENSODEG00000005947) #21	CDADC1 (ENSODEG00000005355) #22	CAB39L (ENSODEG00000005405) #23	SETDB2 (ENSODEG00000005653) #24	RCBTB1 (ENSODEG00000009239) #26	EBPL (ENSODEG00000006022) #28	ENSODEG00000006427 #29	ENSODEG00000005796	ENSODEG00000006101 #33	TRIM13 (ENSODEG00000005624) #34	ENSODEG00000019247	ENSODEG00000006325	ENSODEG00000006650	DLEU7 (ENSODEG00000006775)	ENSODEG00000006793	ENSODEG00000007411	C13orf42 (ENSODEG00000005880)
Naked mole-rat female	MODERN SPECIES	2	ENSHGLG00000019880	ENSHGLG00000006924	ENSHGLG00000006869 #11	NUDT15 (ENSHGLG00000037073) #12	MED4 (ENSHGLG00000013271) #13	ENSHGLG00000013614 #15	ENSHGLG00000012986	RB1 (ENSHGLG00000003581) #16	ENSHGLG00000037766	RCBTB2 (ENSHGLG00000003102) #18	ENSHGLG00000043759	ENSHGLG00000034874	ENSHGLG00000011200	FNDC3A (ENSHGLG00000007427) #20	MLNR (ENSHGLG00000006363) #21	CDADC1 (ENSHGLG00000007415) #22	CAB39L (ENSHGLG00000005677) #23	SETDB2 (ENSHGLG00000003820) #24	PHF11 (ENSHGLG00000003303) #25	RCBTB1 (ENSHGLG00000003006) #26	ARL11 (ENSHGLG00000031866) #27	EBPL (ENSHGLG00000005678) #28	KPNA3 (ENSHGLG00000004176) #29	ENSHGLG00000047604	SPRYD7 (ENSHGLG00000003741) #33	TRIM13 (ENSHGLG00000037520) #34	ENSHGLG00000020485	DLEU7 (ENSHGLG00000046292)	RNASEH2B (ENSHGLG00000007730)	ENSHGLG00000004840	C13orf42 (ENSHGLG00000004742)
Sciuridae	ANCESTRAL SPECIES	34	ENSGT00710000106860	ENSGT00940000160585	ENSGT00940000159528 #7	ENSGT00390000011864 #8	ENSGT01050000244937.a.a #9	ENSGT00390000010170.a.b #11	ENSGT00390000003338 #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #15	ENSGT00950000183202.b #16	ENSGT01040000240444.A.a.a.a.a #17	ENSGT00940000158925 #18	ENSGT01100000263536.B.c.a #19	ENSGT00940000159319 #20	ENSGT01100000263484.C.a #21	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #24	ENSGT00950000182865.b.a.b.b.b.a #25	ENSGT00940000155814 #26	ENSGT00940000162731 #27	ENSGT00530000063715.b #28	ENSGT01050000244891.C.c.b #29	ENSGT00390000011048 #33	ENSGT00940000159715 #34	ENSGT00940000161898 #35	ENSGT00390000011737	ENSGT00390000011439	ENSGT00940000162114	ENSGT00390000003838	ENSGT00590000083134.a.a
Eurasian red squirrel	MODERN SPECIES	13	LRCH1 (ENSSVLG00005001766) #7	ENSSVLG00005001827 #8	ENSSVLG00005001859 #9	SUCLA2 (ENSSVLG00005001944) #11	ENSSVLG00005001974 #12	MED4 (ENSSVLG00005001989) #13	ITM2B (ENSSVLG00005002020) #15	ENSSVLG00005002047	RB1 (ENSSVLG00005002082) #16	LPAR6 (ENSSVLG00005002170) #17	RCBTB2 (ENSSVLG00005002211) #18	ENSSVLG00005002284	ENSSVLG00005002299 #20	ENSSVLG00005002325 #20	MLNR (ENSSVLG00005002363) #21	CDADC1 (ENSSVLG00005002377) #22	ENSSVLG00005002409	CAB39L (ENSSVLG00005002440) #23	SETDB2 (ENSSVLG00005002488) #24	ENSSVLG00005002542 #25	RCBTB1 (ENSSVLG00005002559) #26	ARL11 (ENSSVLG00005002576) #27	EBPL (ENSSVLG00005002591) #28	KPNA3 (ENSSVLG00005002614) #29	SPRYD7 (ENSSVLG00005002639) #33	ENSSVLG00005002671	ENSSVLG00005002704 #35	TRIM13 (ENSSVLG00005002735) #34	ENSSVLG00005002745 #35	ENSSVLG00005002766	ENSSVLG00005002781
Marmotini	ANCESTRAL SPECIES	29	ENSGT00710000106860	ENSGT00940000160585	ENSGT00940000159528 #7	ENSGT00390000011864 #8	ENSGT01050000244937.a.a #9	ENSGT00390000010170.a.b #11	ENSGT00390000003338 #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #15	ENSGT01040000240444.A.a.a.a.a #17	ENSGT00950000183202.b #16	ENSGT00940000158925 #18	ENSGT01100000263536.B.c.a #19	ENSGT00940000159319 #20	ENSGT01100000263484.C.a #21	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #24	ENSGT00950000182865.b.a.b.b.b.a #25	ENSGT00940000155814 #26	ENSGT00940000162731 #27	ENSGT00530000063715.b #28	ENSGT01050000244891.C.c.b #29	ENSGT00390000011048 #33	ENSGT00940000159715 #34	ENSGT00940000161898 #35	ENSGT00390000011737	ENSGT00390000011439	ENSGT00940000162114	ENSGT00390000003838	ENSGT00590000083134.a.a
Marmotini_b	ANCESTRAL SPECIES	110		ENSGT00940000160585	ENSGT00940000159528 #7	ENSGT00390000011864 #8	ENSGT01050000244937.a.a #9	ENSGT00390000010170.a.b #11	ENSGT00390000003338 #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #15	ENSGT00950000183202.b #16	ENSGT01040000240444.A.a.a.a.a #17	ENSGT00940000158925 #18	ENSGT01100000263536.B.c.a #19	ENSGT00940000159319 #20	ENSGT01100000263484.C.a #21	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #24	ENSGT00950000182865.b.a.b.b.b.a #25	ENSGT00940000155814 #26	ENSGT00940000162731 #27	ENSGT00530000063715.b #28	ENSGT01050000244891.C.c.b #29	ENSGT00390000011048 #33	ENSGT00940000159715 #34	ENSGT00940000161898 #35	ENSGT00390000011737	ENSGT00390000011439	ENSGT00940000162114	ENSGT00390000003838	ENSGT00590000083134.a.a
Arctic ground squirrel	MODERN SPECIES	124		ENSUPAG00010004625	LRCH1 (ENSUPAG00010004570) #7	ESD (ENSUPAG00010004501) #8	HTR2A (ENSUPAG00010004485) #9	SUCLA2 (ENSUPAG00010004459) #11	NUDT15 (ENSUPAG00010004450) #12	MED4 (ENSUPAG00010004439) #13	ITM2B (ENSUPAG00010004431) #15	LPAR6 (ENSUPAG00010004428) #17	RB1 (ENSUPAG00010004366) #16	RCBTB2 (ENSUPAG00010004306) #18	CYSLTR2 (ENSUPAG00010004301) #19	FNDC3A (ENSUPAG00010004258) #20	MLNR (ENSUPAG00010004242) #21	CDADC1 (ENSUPAG00010004175) #22	CAB39L (ENSUPAG00010004156) #23	SETDB2 (ENSUPAG00010004135) #24	PHF11 (ENSUPAG00010004112) #25	RCBTB1 (ENSUPAG00010004083) #26	ARL11 (ENSUPAG00010004075) #27	EBPL (ENSUPAG00010004067) #28	KPNA3 (ENSUPAG00010004046) #29	SPRYD7 (ENSUPAG00010004032) #33	TRIM13 (ENSUPAG00010004025) #34	KCNRG (ENSUPAG00010004022) #35	DLEU7 (ENSUPAG00010003981)	RNASEH2B (ENSUPAG00010003959)	ENSUPAG00010003902	C13orf42 (ENSUPAG00010003886)	FAM124A (ENSUPAG00010003875)
Squirrel	MODERN SPECIES	165				LRCH1 (ENSSTOG00000002840) #7	ESD (ENSSTOG00000002854) #8	HTR2A (ENSSTOG00000002863) #9	SUCLA2 (ENSSTOG00000003010) #11	NUDT15 (ENSSTOG00000001335) #12	MED4 (ENSSTOG00000001343) #13	ITM2B (ENSSTOG00000007270) #15	RB1 (ENSSTOG00000000927) #16	LPAR6 (ENSSTOG00000026961) #17	RCBTB2 (ENSSTOG00000014863) #18	FNDC3A (ENSSTOG00000011923) #20	MLNR (ENSSTOG00000011965) #21	CDADC1 (ENSSTOG00000011972) #22	ENSSTOG00000021927	CAB39L (ENSSTOG00000002967) #23	SETDB2 (ENSSTOG00000002985) #24	PHF11 (ENSSTOG00000023483) #25	RCBTB1 (ENSSTOG00000028110) #26	EBPL (ENSSTOG00000002999) #28	KPNA3 (ENSSTOG00000003006) #29	SPRYD7 (ENSSTOG00000029895) #33	TRIM13 (ENSSTOG00000024506) #34	KCNRG (ENSSTOG00000001023) #35	DLEU7 (ENSSTOG00000022745)	RNASEH2B (ENSSTOG00000015126)	ENSSTOG00000007324	C13orf42 (ENSSTOG00000033767)	FAM124A (ENSSTOG00000026616)
Alpin marmot	DUPLICATION
Alpin marmot	MODERN SPECIES	13	RUBCNL (ENSMMMG00000023314)	LRCH1 (ENSMMMG00000023214) #7	ESD (ENSMMMG00000023189) #8	HTR2A (ENSMMMG00000023175) #9	SUCLA2 (ENSMMMG00000023163) #11	NUDT15 (ENSMMMG00000023158) #12	MED4 (ENSMMMG00000023156) #13	ITM2B (ENSMMMG00000023154) #15	LPAR6 (ENSMMMG00000023147) #17	RB1 (ENSMMMG00000023141) #16	RCBTB2 (ENSMMMG00000023136) #18	CYSLTR2 (ENSMMMG00000023126) #19	FNDC3A (ENSMMMG00000023109) #20	ENSMMMG00000023108	ENSMMMG00000023106	CDADC1 (ENSMMMG00000023083) #22	ENSMMMG00000023071 #23	SETDB2 (ENSMMMG00000023069) #24	PHF11 (ENSMMMG00000023063) #25	RCBTB1 (ENSMMMG00000023061) #26	ARL11 (ENSMMMG00000023058) #27	EBPL (ENSMMMG00000023057) #28	KPNA3 (ENSMMMG00000023052) #29	SPRYD7 (ENSMMMG00000023040) #33	TRIM13 (ENSMMMG00000023039) #34	KCNRG (ENSMMMG00000023037) #35	DLEU7 (ENSMMMG00000022997)	RNASEH2B (ENSMMMG00000022994)	ENSMMMG00000022990	C13orf42 (ENSMMMG00000022978)	FAM124A (ENSMMMG00000022976)
Alpin marmot	MODERN SPECIES	39	NEURL1 (ENSMMMG00000000158)	SH3PXD2A (ENSMMMG00000000203)	STN1 (ENSMMMG00000000299)	SLK (ENSMMMG00000000361)	COL17A1 (ENSMMMG00000000492)	SFR1 (ENSMMMG00000000727)	CFAP43 (ENSMMMG00000000749)	ENSMMMG00000001103	GSTO1 (ENSMMMG00000001145)	GSTO2 (ENSMMMG00000001167)	ITPRIP (ENSMMMG00000001191)	CFAP58 (ENSMMMG00000001204)	SORCS3 (ENSMMMG00000001241)	SORCS1 (ENSMMMG00000001325)	ENSMMMG00000001588	ENSMMMG00000001594 #22	XPNPEP1 (ENSMMMG00000001605)	ENSMMMG00000001684	ADD3 (ENSMMMG00000001707)	MXI1 (ENSMMMG00000001946)	ENSMMMG00000001959	SMNDC1 (ENSMMMG00000001963)	ENSMMMG00000001972	DUSP5 (ENSMMMG00000001986)	SMC3 (ENSMMMG00000002004)	RBM20 (ENSMMMG00000002043)	ENSMMMG00000002115	PDCD4 (ENSMMMG00000002133)	ENSMMMG00000002162	ENSMMMG00000002171	ADRA2A (ENSMMMG00000002204)
Laurasiatheria	ANCESTRAL SPECIES	20	ENSGT00710000106860	ENSGT00940000160585	ENSGT00940000159528 #7	ENSGT00390000011864 #8	ENSGT01050000244937.a.a #9	ENSGT00390000010170.a.b #11	ENSGT00390000003338 #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #15	ENSGT00950000183202.b #16	ENSGT01040000240444.A.a.a.a.a #17	ENSGT00940000158925 #18	ENSGT01100000263536.B.c.a #19	ENSGT00940000159319 #20	ENSGT01100000263484.C.a #21	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000169427	ENSGT00940000158209 #24	ENSGT00950000182865.b.a.b.b.b.a #25	ENSGT00940000155814 #26	ENSGT00940000162731 #27	ENSGT00530000063715.b #28	ENSGT01050000244891.C.c.b #29	ENSGT00390000011048 #33	ENSGT00940000159715 #34	ENSGT00940000161898 #35	ENSGT00390000011737	ENSGT00390000011439	ENSGT00940000162114	ENSGT00390000003838
Eulipotyphla	ANCESTRAL SPECIES	2295															ENSGT01100000263484.C.a #21	ENSGT00940000153676.b #22
Common shrew	MODERN SPECIES	10590															MLNR (ENSSARG00000010555) #21	CDADC1 (ENSSARG00000010558) #22
Hedgehog	MODERN SPECIES	632																CDADC1 (ENSEEUG00000000532) #22
Laurasiatheria_a	ANCESTRAL SPECIES	21	ENSGT00710000106860	ENSGT00940000160585	ENSGT00940000159528 #7	ENSGT00390000011864 #8	ENSGT01050000244937.a.a #9	ENSGT00390000010170.a.b #11	ENSGT00390000003338 #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #15	ENSGT00950000183202.b #16	ENSGT01040000240444.A.a.a.a.a #17	ENSGT00940000158925 #18	ENSGT01100000263536.B.c.a #19	ENSGT00940000159319 #20	ENSGT01100000263484.C.a #21	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000169427	ENSGT00940000158209 #24	ENSGT00950000182865.b.a.b.b.b.a #25	ENSGT00940000155814 #26	ENSGT00940000162731 #27	ENSGT00530000063715.b #28	ENSGT01050000244891.C.c.b #29	ENSGT00390000011048.f #33	ENSGT00940000159715 #34	ENSGT00940000161898 #35	ENSGT00390000011737	ENSGT00390000011439	ENSGT00940000162114	ENSGT00390000003838
Artiodactyla	ANCESTRAL SPECIES	21	ENSGT00940000160585	ENSGT00940000159528 #7	ENSGT00390000011864 #8	ENSGT01050000244937.a.a #9	ENSGT00390000010170.a.b #11	ENSGT00390000003338 #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #15	ENSGT00950000183202.b #16	ENSGT01040000240444.A.a.a.a.a #17	ENSGT00940000158925 #18	ENSGT00990000203619.B	ENSGT01100000263536.B.c.a #19	ENSGT00940000159319 #20	ENSGT01100000263484.C.a #21	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000169427	ENSGT00940000158209 #24	ENSGT00950000182865.b.a.b.b.b.a #25	ENSGT00940000155814 #26	ENSGT00940000162731 #27	ENSGT00530000063715.b #28	ENSGT01050000244891.C.c.b #29	ENSGT00390000011048.f #33	ENSGT00940000159715 #34	ENSGT00940000161898 #35	ENSGT00390000011737	ENSGT00390000011439	ENSGT00940000162114	ENSGT00390000003838
Suina	ANCESTRAL SPECIES	29	ENSGT00940000160585	ENSGT00940000159528 #7	ENSGT00390000011864 #8	ENSGT01050000244937.a.a #9	ENSGT00390000010170.a.b #11	ENSGT00390000003338 #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #15	ENSGT00950000183202.b #16	ENSGT01040000240444.A.a.a.a.a #17	ENSGT00940000158925 #18	ENSGT00990000203619.B	ENSGT01050000247867	ENSGT00940000159319 #20	ENSGT01100000263484.C.a #21	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #24	ENSGT00950000182865.b.a.b.b.b.a #25	ENSGT00940000155814 #26	ENSGT00940000162731 #27	ENSGT00530000063715.b #28	ENSGT01050000244891.C.c.b #29	ENSGT00390000011048.f #33	ENSGT00940000159715 #34	ENSGT00940000161898 #35	ENSGT00390000011737	ENSGT00390000011439	ENSGT00940000162114	ENSGT00390000003838	ENSGT00590000083134.a.a
Pig	MODERN SPECIES	2	ESD (ENSSSCG00000009407) #8	HTR2A (ENSSSCG00000037452) #9	SUCLA2 (ENSSSCG00000009405) #11	NUDT15 (ENSSSCG00000027551) #12	MED4 (ENSSSCG00000035098) #13	ITM2B (ENSSSCG00000009403) #15	LPAR6 (ENSSSCG00000061460) #17	RB1 (ENSSSCG00000009401) #16	RCBTB2 (ENSSSCG00000009400) #18	CYSLTR2 (ENSSSCG00000009399)	ENSSSCG00000039832	ENSSSCG00000048866	ENSSSCG00000052494	FNDC3A (ENSSSCG00000022159) #20	MLNR (ENSSSCG00000022064) #21	CDADC1 (ENSSSCG00000031598) #22	CAB39L (ENSSSCG00000009397) #23	SETDB2 (ENSSSCG00000009395) #24	PHF11 (ENSSSCG00000009396) #25	RCBTB1 (ENSSSCG00000021060) #26	ARL11 (ENSSSCG00000053768) #27	EBPL (ENSSSCG00000009393) #28	KPNA3 (ENSSSCG00000024125) #29	SPRYD7 (ENSSSCG00000009390) #33	TRIM13 (ENSSSCG00000009389) #34	KCNRG (ENSSSCG00000009388) #35	ENSSSCG00000047786	ENSSSCG00000049891	DLEU7 (ENSSSCG00000009387)	RNASEH2B (ENSSSCG00000024385)	ENSSSCG00000024765
Chacoan peccary	MODERN SPECIES	216	RUBCNL (ENSCWAG00000001665)	LRCH1 (ENSCWAG00000001714) #7	ESD (ENSCWAG00000001743) #8	HTR2A (ENSCWAG00000001769) #9	SUCLA2 (ENSCWAG00000001786) #11	NUDT15 (ENSCWAG00000001809) #12	MED4 (ENSCWAG00000001822) #13	ITM2B (ENSCWAG00000001848) #15	RB1 (ENSCWAG00000001887) #16	LPAR6 (ENSCWAG00000001900) #17	RCBTB2 (ENSCWAG00000001915) #18	ENSCWAG00000001961	ENSCWAG00000001972	FNDC3A (ENSCWAG00000002000) #20	MLNR (ENSCWAG00000002068) #21	CDADC1 (ENSCWAG00000002080) #22	CAB39L (ENSCWAG00000002108) #23	SETDB2 (ENSCWAG00000002141) #24	PHF11 (ENSCWAG00000002166) #25	RCBTB1 (ENSCWAG00000002188) #26	ARL11 (ENSCWAG00000002209) #27	EBPL (ENSCWAG00000002227) #28	KPNA3 (ENSCWAG00000002256) #29	SPRYD7 (ENSCWAG00000002290) #33	TRIM13 (ENSCWAG00000002306) #34	KCNRG (ENSCWAG00000002315) #35	DLEU7 (ENSCWAG00000002340)	RNASEH2B (ENSCWAG00000002368)	ENSCWAG00000002466	ENSCWAG00000002483	C13orf42 (ENSCWAG00000002508)
Artiodactyla_a	ANCESTRAL SPECIES	22	ENSGT00940000160585	ENSGT00940000159528 #7	ENSGT00390000011864 #8	ENSGT01050000244937.a.a #9	ENSGT00390000010170.a.b #11	ENSGT00390000003338 #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #15	ENSGT00950000183202.b #16	ENSGT01040000240444.A.a.a.a.a #17	ENSGT00940000158925 #18	ENSGT00990000203619.B	ENSGT01100000263536.B.c.a #19	ENSGT00940000159319 #20	ENSGT01100000263484.C.a #21	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000169427	ENSGT00940000158209 #24	ENSGT00950000182865.b.a.b.b.b.a #25	ENSGT00940000155814 #26	ENSGT00940000162731 #27	ENSGT00530000063715.b #28	ENSGT01050000244891.C.c.b #29	ENSGT00390000011048.f #33	ENSGT00940000159715 #34	ENSGT00940000161898 #35	ENSGT00390000011737	ENSGT00390000011439	ENSGT00940000162114	ENSGT00390000003838
Artiodactyla_b	ANCESTRAL SPECIES	22	ENSGT00940000160585	ENSGT00940000159528 #7	ENSGT00390000011864 #8	ENSGT01050000244937.a.a #9	ENSGT00390000010170.a.b #11	ENSGT00390000003338 #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #15	ENSGT00950000183202.b #16	ENSGT01040000240444.A.a.a.a.a #17	ENSGT00940000158925 #18	ENSGT00990000203619.B	ENSGT01100000263536.B.c.a #19	ENSGT00940000159319 #20	ENSGT01100000263484.C.a #21	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #24	ENSGT00950000182865.b.a.b.b.b.a #25	ENSGT00940000155814 #26	ENSGT00940000162731 #27	ENSGT00530000063715.b #28	ENSGT01050000244891.C.c.b #29	ENSGT00390000011048.f #33	ENSGT00940000159715 #34	ENSGT00940000161898 #35	ENSGT00390000011737	ENSGT00390000011439	ENSGT00940000162114	ENSGT00390000003838	ENSGT00590000083134.a.a
Cetacea	ANCESTRAL SPECIES	20	ENSGT00940000159528 #7	ENSGT00390000011864 #8	ENSGT01050000244937.a.a #9	ENSGT00390000010170.a.b #11	ENSGT00390000003338.s.a #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #15	ENSGT01040000240444.A.a.a.a.a #17	ENSGT00950000183202.b #16	ENSGT00940000158925 #18	ENSGT00990000203619.B	ENSGT00940000159853.k	ENSGT01100000263536.B.c.a #19	ENSGT00940000159319 #20	ENSGT01100000263484.C.a #21	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #24	ENSGT00950000182865.b.a.b.b.b.a #25	ENSGT00940000155814 #26	ENSGT00940000162731 #27	ENSGT00530000063715.b #28	ENSGT01050000244891.C.c.b #29	ENSGT00390000011048.f #33	ENSGT00940000159715 #34	ENSGT00940000161898 #35	ENSGT00390000011737	ENSGT00390000011439	ENSGT00940000162114	ENSGT00390000003838	ENSGT00590000083134.a.a
Odontoceti	ANCESTRAL SPECIES	21	ENSGT00940000159528 #7	ENSGT00390000011864 #8	ENSGT01050000244937.a.a #9	ENSGT00390000010170.a.b #11	ENSGT00390000003338.s.a #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #15	ENSGT00950000183202.b #16	ENSGT01040000240444.A.a.a.a.a #17	ENSGT00940000158925 #18	ENSGT00990000203619.B	ENSGT00940000159853.k	ENSGT01100000263536.B.c.a #19	ENSGT00940000159319 #20	ENSGT01100000263484.C.a #21	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #24	ENSGT00950000182865.b.a.b.b.b.a #25	ENSGT00940000155814 #26	ENSGT00940000162731 #27	ENSGT00530000063715.b #28	ENSGT01050000244891.C.c.b #29	ENSGT00390000011048.f #33	ENSGT00940000159715 #34	ENSGT00940000161898 #35	ENSGT00390000011737	ENSGT00390000011439	ENSGT00940000162114	ENSGT00390000003838	ENSGT00590000083134.a.a
Odontoceti_a	ANCESTRAL SPECIES	24	ENSGT00940000160585	ENSGT00940000159528 #7	ENSGT00390000011864 #8	ENSGT01050000244937.a.a #9	ENSGT00390000010170.a.b #11	ENSGT00390000003338.s.a #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #15	ENSGT00950000183202.b #16	ENSGT01040000240444.A.a.a.a.a #17	ENSGT00940000158925 #18	ENSGT00990000203619.B	ENSGT00940000159853.k	ENSGT00940000159319 #20	ENSGT01100000263484.C.a #21	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #24	ENSGT00950000182865.b.a.b.b.b.a #25	ENSGT00940000155814 #26	ENSGT00940000162731 #27	ENSGT00530000063715.b #28	ENSGT01050000244891.C.c.b #29	ENSGT00390000011048.f #33	ENSGT00940000159715 #34	ENSGT00940000161898 #35	ENSGT00390000011737	ENSGT00390000011439	ENSGT00940000162114	ENSGT00390000003838	ENSGT00590000083134.a.a
Odontoceti_b	ANCESTRAL SPECIES	21	ENSGT00940000160585	ENSGT00940000159528 #7	ENSGT00390000011864 #8	ENSGT01050000244937.a.a #9	ENSGT00390000010170.a.b #11	ENSGT00390000003338.s.a #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #15	ENSGT01040000240444.A.a.a.a.a #17	ENSGT00950000183202.b #16	ENSGT00940000158925 #18	ENSGT00990000203619.B	ENSGT00940000159853.k	ENSGT00940000159319 #20	ENSGT01100000263484.C.a #21	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #24	ENSGT00950000182865.b.a.b.b.b.a #25	ENSGT00940000155814 #26	ENSGT00940000162731 #27	ENSGT00530000063715.b #28	ENSGT01050000244891.C.c.b #29	ENSGT00390000011048.f #33	ENSGT00940000159715 #34	ENSGT00940000161898 #35	ENSGT00390000011737	ENSGT00390000011439	ENSGT00390000003838	ENSGT00590000083134.a.a	ENSGT00940000160941
Monodontidae	ANCESTRAL SPECIES	15	ENSGT00940000160585	ENSGT00940000159528 #7	ENSGT00390000011864 #8	ENSGT01050000244937.a.a #9	ENSGT00390000010170.a.b #11	ENSGT00390000003338.s.a #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #15	ENSGT00950000183202.b #16	ENSGT01040000240444.A.a.a.a.a #17	ENSGT00940000158925 #18	ENSGT00990000203619.B	ENSGT00940000159853.k	ENSGT00940000159319 #20	ENSGT01100000263484.C.a #21	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #24	ENSGT00950000182865.b.a.b.b.b.a #25	ENSGT00940000155814 #26	ENSGT00940000162731 #27	ENSGT00530000063715.b #28	ENSGT01050000244891.C.c.b #29	ENSGT00390000011048.f #33	ENSGT00940000159715 #34	ENSGT00940000161898 #35	ENSGT00390000011737	ENSGT00390000011439	ENSGT00390000003838	ENSGT00590000083134.a.a	ENSGT00940000160941
Beluga whale	MODERN SPECIES	29	LRRC63 (ENSDLEG00000006661)	RUBCNL (ENSDLEG00000006651)	LRCH1 (ENSDLEG00000006642) #7	ESD (ENSDLEG00000006636) #8	HTR2A (ENSDLEG00000006633) #9	ENSDLEG00000006628	ENSDLEG00000006598 #11	NUDT15 (ENSDLEG00000006593) #12	MED4 (ENSDLEG00000018152) #13	ITM2B (ENSDLEG00000018145) #15	LPAR6 (ENSDLEG00000018142) #17	RB1 (ENSDLEG00000017962) #16	RCBTB2 (ENSDLEG00000017915) #18	CYSLTR2 (ENSDLEG00000017910)	FNDC3A (ENSDLEG00000017835) #20	CDADC1 (ENSDLEG00000017796) #22	CAB39L (ENSDLEG00000017770) #23	ENSDLEG00000017746	SETDB2 (ENSDLEG00000017692) #24	PHF11 (ENSDLEG00000017664) #25	RCBTB1 (ENSDLEG00000017626) #26	ARL11 (ENSDLEG00000017617) #27	EBPL (ENSDLEG00000017604) #28	KPNA3 (ENSDLEG00000017566) #29	SPRYD7 (ENSDLEG00000017540) #33	TRIM13 (ENSDLEG00000017528) #34	KCNRG (ENSDLEG00000017518) #35	DLEU7 (ENSDLEG00000017502)	RNASEH2B (ENSDLEG00000017435)	FAM124A (ENSDLEG00000017408)	SERPINE3 (ENSDLEG00000017376)
Narwhal	MODERN SPECIES	315	RUBCNL (ENSMMNG00015015197)	LRCH1 (ENSMMNG00015015247) #7	ESD (ENSMMNG00015015295) #8	HTR2A (ENSMMNG00015015311) #9	SUCLA2 (ENSMMNG00015015328) #11	ENSMMNG00015015349 #12	MED4 (ENSMMNG00015015360) #13	ITM2B (ENSMMNG00015015387) #15	RB1 (ENSMMNG00015015417) #16	LPAR6 (ENSMMNG00015015469) #17	RCBTB2 (ENSMMNG00015015490) #18	ENSMMNG00015015535	ENSMMNG00015015538	FNDC3A (ENSMMNG00015015574) #20	ENSMMNG00015015744 #21	CDADC1 (ENSMMNG00015015774) #22	CAB39L (ENSMMNG00015015818) #23	ENSMMNG00015015869	SETDB2 (ENSMMNG00015015902) #24	PHF11 (ENSMMNG00015015972) #25	RCBTB1 (ENSMMNG00015016038) #26	ARL11 (ENSMMNG00015016072) #27	EBPL (ENSMMNG00015016101) #28	KPNA3 (ENSMMNG00015016147) #29	SPRYD7 (ENSMMNG00015016188) #33	TRIM13 (ENSMMNG00015016231) #34	KCNRG (ENSMMNG00015016246) #35	DLEU7 (ENSMMNG00015016283)	ENSMMNG00015016308	RNASEH2B (ENSMMNG00015016369)	C13orf42 (ENSMMNG00015016493)
Vaquita	MODERN SPECIES	9	LRCH1 (ENSPSNG00000011958) #7	ESD (ENSPSNG00000011858) #8	HTR2A (ENSPSNG00000011806) #9	SUCLA2 (ENSPSNG00000011705) #11	ENSPSNG00000011663	ENSPSNG00000011620 #12	MED4 (ENSPSNG00000011552) #13	ITM2B (ENSPSNG00000011455) #15	LPAR6 (ENSPSNG00000011434) #17	RB1 (ENSPSNG00000011372) #16	RCBTB2 (ENSPSNG00000011199) #18	ENSPSNG00000011140	ENSPSNG00000011098	FNDC3A (ENSPSNG00000010915) #20	MLNR (ENSPSNG00000010798) #21	CDADC1 (ENSPSNG00000010730) #22	ENSPSNG00000022529	CAB39L (ENSPSNG00000022525) #23	SETDB2 (ENSPSNG00000022516) #24	PHF11 (ENSPSNG00000022507) #25	RCBTB1 (ENSPSNG00000022496) #26	ARL11 (ENSPSNG00000022492) #27	EBPL (ENSPSNG00000022487) #28	KPNA3 (ENSPSNG00000022470) #29	SPRYD7 (ENSPSNG00000022460) #33	TRIM13 (ENSPSNG00000022451) #34	KCNRG (ENSPSNG00000022442) #35	ENSPSNG00000022432	DLEU7 (ENSPSNG00000022427)	RNASEH2B (ENSPSNG00000022389)	C13orf42 (ENSPSNG00000022369)
Dolphin	MODERN SPECIES	3176														FNDC3A (ENSTTRG00000003995) #20	MLNR (ENSTTRG00000004044) #21	CDADC1 (ENSTTRG00000004052) #22	CAB39L (ENSTTRG00000004058) #23
Sperm whale	MODERN SPECIES	4	LRCH1 (ENSPCTG00005018266) #7	ESD (ENSPCTG00005018195) #8	HTR2A (ENSPCTG00005018130) #9	SUCLA2 (ENSPCTG00005018015) #11	ENSPCTG00005017963 #12	ENSPCTG00005017946 #12	MED4 (ENSPCTG00005017893) #13	ITM2B (ENSPCTG00005017804) #15	LPAR6 (ENSPCTG00005017780) #17	RB1 (ENSPCTG00005017710) #16	RCBTB2 (ENSPCTG00005017419) #18	CYSLTR2 (ENSPCTG00005017388) #19	ENSPCTG00005017346	FNDC3A (ENSPCTG00005017222) #20	MLNR (ENSPCTG00005017145) #21	CDADC1 (ENSPCTG00005016983) #22	CAB39L (ENSPCTG00005016916) #23	ENSPCTG00005016839	SETDB2 (ENSPCTG00005016607) #24	PHF11 (ENSPCTG00005016509) #25	RCBTB1 (ENSPCTG00005016419) #26	ARL11 (ENSPCTG00005016384) #27	EBPL (ENSPCTG00005016280) #28	KPNA3 (ENSPCTG00005016192) #29	SPRYD7 (ENSPCTG00005016094) #33	TRIM13 (ENSPCTG00005016076) #34	KCNRG (ENSPCTG00005016035) #35	ENSPCTG00005016003	DLEU7 (ENSPCTG00005015971)	ENSPCTG00005015716	C13H13orf42 (ENSPCTG00005015632)
Blue whale	MODERN SPECIES	9	LRRC63 (ENSBMSG00010016199)	RUBCNL (ENSBMSG00010016070)	LRCH1 (ENSBMSG00010015742) #7	ESD (ENSBMSG00010015643) #8	HTR2A (ENSBMSG00010015606) #9	SUCLA2 (ENSBMSG00010015547) #11	ENSBMSG00010015507	MED4 (ENSBMSG00010015472) #13	ITM2B (ENSBMSG00010015413) #15	LPAR6 (ENSBMSG00010015391) #17	RB1 (ENSBMSG00010015354) #16	RCBTB2 (ENSBMSG00010015126) #18	CYSLTR2 (ENSBMSG00010015059) #19	FNDC3A (ENSBMSG00010014911) #20	MLNR (ENSBMSG00010014851) #21	CDADC1 (ENSBMSG00010014838) #22	ENSBMSG00010014815	CAB39L (ENSBMSG00010014720) #23	SETDB2 (ENSBMSG00010014652) #24	PHF11 (ENSBMSG00010014604) #25	RCBTB1 (ENSBMSG00010014563) #26	ARL11 (ENSBMSG00010014541) #27	EBPL (ENSBMSG00010014472) #28	KPNA3 (ENSBMSG00010014406) #29	SPRYD7 (ENSBMSG00010014337) #33	TRIM13 (ENSBMSG00010014316) #34	KCNRG (ENSBMSG00010014299) #35	DLEU7 (ENSBMSG00010014262)	ENSBMSG00010014157	C13orf42 (ENSBMSG00010014066)	ENSBMSG00010014033
Pecora	ANCESTRAL SPECIES	23	ENSGT00940000160585	ENSGT00940000159528 #7	ENSGT00390000011864.f #8	ENSGT01050000244937.a.a #9	ENSGT00390000010170.a.b #11	ENSGT00390000003338 #12	ENSGT00440000033232.c.a.a	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #15	ENSGT00950000183202.b #16	ENSGT01040000240444.A.a.a.a.a #17	ENSGT00940000158925 #18	ENSGT00990000203619.B	ENSGT00940000159319 #20	ENSGT01100000263484.C.a #21	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #24	ENSGT00950000182865.b.a.b.b.b.a #25	ENSGT00940000155814 #26	ENSGT00940000162731 #27	ENSGT00530000063715.b #28	ENSGT01050000244891.C.c.b #29	ENSGT00390000011048.f #33	ENSGT00940000159715 #34	ENSGT00940000161898 #35	ENSGT00390000011737	ENSGT00390000011439	ENSGT00940000162114	ENSGT00390000003838	ENSGT00590000083134.a.a
Yarkand deer	MODERN SPECIES	23	HTR2A (ENSCHYG00000024474) #9	ENSCHYG00000024533	ENSCHYG00000024543 #11	NUDT15 (ENSCHYG00000024631) #12	ENSCHYG00000024649	ENSCHYG00000024654 #13	ITM2B (ENSCHYG00000024688) #15	RB1 (ENSCHYG00000024752) #16	LPAR6 (ENSCHYG00000024973) #17	RCBTB2 (ENSCHYG00000024991) #18	ENSCHYG00000025118	ENSCHYG00000025124	ENSCHYG00000012913	FNDC3A (ENSCHYG00000012972) #20	MLNR (ENSCHYG00000013419) #21	CDADC1 (ENSCHYG00000013468) #22	CAB39L (ENSCHYG00000013652) #23	SETDB2 (ENSCHYG00000013870) #24	ENSCHYG00000014219 #25	RCBTB1 (ENSCHYG00000014739) #26	ARL11 (ENSCHYG00000014869) #27	EBPL (ENSCHYG00000014936) #28	KPNA3 (ENSCHYG00000015100) #29	SPRYD7 (ENSCHYG00000015545) #33	TRIM13 (ENSCHYG00000015725) #34	RNASEH2B (ENSCHYG00000016151)	ENSCHYG00000016690	C13orf42 (ENSCHYG00000016791)	FAM124A (ENSCHYG00000016845)	SERPINE3 (ENSCHYG00000016914)	INTS6 (ENSCHYG00000017052)
Percora_a	ANCESTRAL SPECIES	25	ENSGT00940000160585	ENSGT00940000159528 #7	ENSGT00390000011864.f #8	ENSGT01050000244937.a.a #9	ENSGT00390000010170.a.b #11	ENSGT00390000003338 #12	ENSGT00440000033232.c.a.a	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #15	ENSGT00950000183202.b #16	ENSGT01040000240444.A.a.a.a.a #17	ENSGT00940000158925 #18	ENSGT00990000203619.B	ENSGT00940000159319 #20	ENSGT01100000263484.C.a #21	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #24	ENSGT00950000182865.b.a.b.b.b.a #25	ENSGT00940000155814 #26	ENSGT00940000162731 #27	ENSGT00530000063715.b #28	ENSGT01050000244891.C.c.b #29	ENSGT00390000011048.f #33	ENSGT00940000159715 #34	ENSGT00940000161898 #35	ENSGT00390000011737	ENSGT00390000011439.w	ENSGT00940000162114	ENSGT00390000003838	ENSGT00590000083134.a.a
Bovidae	ANCESTRAL SPECIES	25	ENSGT00940000160585	ENSGT00940000159528 #7	ENSGT00390000011864.f #8	ENSGT01050000244937.a.a #9	ENSGT00390000010170.a.b #11	ENSGT00390000003338 #12	ENSGT00440000033232.c.a.a	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #15	ENSGT00950000183202.b #16	ENSGT01040000240444.A.a.a.a.a #17	ENSGT00940000158925 #18	ENSGT00990000203619.B	ENSGT00940000159319 #20	ENSGT01100000263484.C.a #21	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #24	ENSGT00950000182865.b.a.b.b.b.a #25	ENSGT00940000155814 #26	ENSGT00940000162731 #27	ENSGT00530000063715.b #28	ENSGT01050000244891.C.c.b #29	ENSGT00390000011048.f #33	ENSGT00940000159715 #34	ENSGT00940000161898 #35	ENSGT00390000011737	ENSGT00390000011439.w	ENSGT00940000162114	ENSGT00390000003838	ENSGT00590000083134.a.a
Caprinae	ANCESTRAL SPECIES	28														ENSGT00940000159319 #20	ENSGT01100000263484.C.a #21	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #24	ENSGT00950000182865.b.a.b.b.b.a #25	ENSGT00940000155814 #26	ENSGT00940000162731 #27	ENSGT00530000063715.b #28	ENSGT01050000244891.C.c.b #29	ENSGT00390000011048.f #33	ENSGT00940000159715 #34	ENSGT00940000161898 #35	ENSGT00390000011439.w	ENSGT00390000003838	ENSGT00590000083134.a.a	ENSGT00940000160941	ENSGT00390000016655.a.a.b
Rambouillet Sheep	MODERN SPECIES	1	LRCH1 (ENSOARG00020008711) #7	ENSOARG00020009357 #8	HTR2A (ENSOARG00020009408) #9	ENSOARG00020009436 #11	ENSOARG00020009566 #12	MED4 (ENSOARG00020009593) #13	ITM2B (ENSOARG00020009664) #15	RB1 (ENSOARG00020009781) #16	LPAR6 (ENSOARG00020010750) #17	RCBTB2 (ENSOARG00020010807) #18	ENSOARG00020010995	ENSOARG00020011030	ENSOARG00020011095	FNDC3A (ENSOARG00020011142) #20	MLNR (ENSOARG00020012038) #21	CDADC1 (ENSOARG00020012096) #22	CAB39L (ENSOARG00020012226) #23	SETDB2 (ENSOARG00020012377) #24	ENSOARG00020012627 #25	RCBTB1 (ENSOARG00020012716) #26	ARL11 (ENSOARG00020012929) #27	KPNA3 (ENSOARG00020012953) #29	SPRYD7 (ENSOARG00020013110) #33	TRIM13 (ENSOARG00020013273) #34	KCNRG (ENSOARG00020013280) #35	RNASEH2B (ENSOARG00020013563)	C13orf42 (ENSOARG00020013790)	SERPINE3 (ENSOARG00020013893)	INTS6 (ENSOARG00020003114)	WDFY2 (ENSOARG00020003184)	DHRS12 (ENSOARG00020003276)
Goat	MODERN SPECIES	3	LRRC63 (ENSCHIG00000019710)	RUBCNL (ENSCHIG00000012197)	LRCH1 (ENSCHIG00000012630) #7	ENSCHIG00000021306 #8	HTR2A (ENSCHIG00000016921) #9	SUCLA2 (ENSCHIG00000018699) #11	NUDT15 (ENSCHIG00000024171) #12	ENSCHIG00000017652 #13	ITM2B (ENSCHIG00000012734) #15	LPAR6 (ENSCHIG00000019533) #17	RB1 (ENSCHIG00000004374) #16	RCBTB2 (ENSCHIG00000012624) #18	ENSCHIG00000006431	FNDC3A (ENSCHIG00000016024) #20	MLNR (ENSCHIG00000007989) #21	CDADC1 (ENSCHIG00000024233) #22	CAB39L (ENSCHIG00000020668) #23	SETDB2 (ENSCHIG00000014895) #24	ENSCHIG00000021752 #25	RCBTB1 (ENSCHIG00000013206) #26	ENSCHIG00000009624	ARL11 (ENSCHIG00000004176) #27	EBPL (ENSCHIG00000014488) #28	KPNA3 (ENSCHIG00000020446) #29	SPRYD7 (ENSCHIG00000015127) #33	TRIM13 (ENSCHIG00000010839) #34	KCNRG (ENSCHIG00000009570) #35	RNASEH2B (ENSCHIG00000018220)	ENSCHIG00000014579	ENSCHIG00000009486	FAM124A (ENSCHIG00000017545)
Bovinae	ANCESTRAL SPECIES	29													ENSGT01010000228998	ENSGT00940000159319 #20	ENSGT01100000263484.C.a #21	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #24	ENSGT00950000182865.b.a.b.b.b.a #25	ENSGT00940000155814 #26	ENSGT00940000162731 #27	ENSGT00530000063715.b #28	ENSGT01050000244891.C.c.b #29	ENSGT00390000011048.f #33	ENSGT00940000159715 #34	ENSGT00940000161898 #35	ENSGT00390000011737	ENSGT00390000011439.w	ENSGT00940000162114	ENSGT00390000003838	ENSGT00590000083134.a.a
Bos	ANCESTRAL SPECIES	28													ENSGT01010000228998	ENSGT00940000159319 #20	ENSGT01100000263484.C.a #21	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #24	ENSGT00950000182865.b.a.b.b.b.a #25	ENSGT00940000155814 #26	ENSGT00940000162731 #27	ENSGT00530000063715.b #28	ENSGT01050000244891.C.c.b #29	ENSGT00390000011048.f #33	ENSGT00940000159715 #34	ENSGT00940000161898 #35	ENSGT00390000011737	ENSGT00390000011439.w	ENSGT00940000162114	ENSGT00390000003838	ENSGT00590000083134.a.a
Bos_a	ANCESTRAL SPECIES	55	ENSGT01050000244937.a.a #9	ENSGT00390000010170.a.b #11	ENSGT00390000003338 #12	ENSGT00440000033232.c.a.a	ENSGT00390000012063 #13	ENSGT00950000183123.g.a.a.a	ENSGT00950000183115.b.a #15	ENSGT00940000153244.B.z.c.b	ENSGT00950000183202.b #16	ENSGT01040000240444.A.a.a.a.a #17	ENSGT00940000158925 #18	ENSGT00990000203619.B	ENSGT01010000228998	ENSGT00940000159319 #20	ENSGT01100000263484.C.a #21	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #24	ENSGT00950000182865.b.a.b.b.b.a #25	ENSGT00940000155814 #26	ENSGT00940000162731 #27	ENSGT00530000063715.b #28	ENSGT01050000244891.C.c.b #29	ENSGT00390000011048.f #33	ENSGT00940000159715 #34	ENSGT00940000161898 #35	ENSGT00390000011737	ENSGT00390000011439.w	ENSGT00940000162114	ENSGT00390000003838	ENSGT00590000083134.a.a
Wild yak	MODERN SPECIES	1672				ZNF250 (ENSBMUG00000000565)	ZNF16 (ENSBMUG00000001327)	C8orf33 (ENSBMUG00000001339)	ZNF34 (ENSBMUG00000001352)	ENSBMUG00000001373	RB1 (ENSBMUG00000001429) #16	LPAR6 (ENSBMUG00000001452) #17	RCBTB2 (ENSBMUG00000001512) #18	ENSBMUG00000001537	ENSBMUG00000001545	FNDC3A (ENSBMUG00000001611) #20	MLNR (ENSBMUG00000001633) #21	CDADC1 (ENSBMUG00000001665) #22	CAB39L (ENSBMUG00000001694) #23	ENSBMUG00000001712	SETDB2 (ENSBMUG00000001741) #24	PHF11 (ENSBMUG00000001807) #25	ENSBMUG00000001830	RCBTB1 (ENSBMUG00000001872) #26	ARL11 (ENSBMUG00000001893) #27	ENSBMUG00000001911	KPNA3 (ENSBMUG00000001936) #29	SPRYD7 (ENSBMUG00000001977) #33	TRIM13 (ENSBMUG00000001991) #34	KCNRG (ENSBMUG00000002009) #35	DLEU7 (ENSBMUG00000002147)
Domestic yak	MODERN SPECIES	6	SUCLA2 (ENSBGRG00000020790) #11	NUDT15 (ENSBGRG00000020753) #12	ENSBGRG00000020744	MED4 (ENSBGRG00000020636) #13	ENSBGRG00000020600	ITM2B (ENSBGRG00000020531) #15	ENSBGRG00000020504	LPAR6 (ENSBGRG00000020489) #17	RB1 (ENSBGRG00000020100) #16	RCBTB2 (ENSBGRG00000019788) #18	ENSBGRG00000019770	ENSBGRG00000019739	ENSBGRG00000019677	FNDC3A (ENSBGRG00000019368) #20	MLNR (ENSBGRG00000019319) #21	CDADC1 (ENSBGRG00000019174) #22	CAB39L (ENSBGRG00000019026) #23	SETDB2 (ENSBGRG00000018734) #24	ENSBGRG00000018688	ENSBGRG00000018317 #25	ENSBGRG00000018298	RCBTB1 (ENSBGRG00000018215) #26	ARL11 (ENSBGRG00000018165) #27	EBPL (ENSBGRG00000018006) #28	KPNA3 (ENSBGRG00000017654) #29	SPRYD7 (ENSBGRG00000017543) #33	TRIM13 (ENSBGRG00000017523) #34	KCNRG (ENSBGRG00000017474) #35	RNASEH2B (ENSBGRG00000016654)	ENSBGRG00000016362	C13orf42 (ENSBGRG00000016284)
Bos_b	ANCESTRAL SPECIES	33														ENSGT00940000159319 #20	ENSGT01100000263484.C.a #21	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #24	ENSGT00950000182865.b.a.b.b.b.a #25	ENSGT00940000155814 #26	ENSGT00940000162731 #27	ENSGT00530000063715.b #28	ENSGT01050000244891.C.c.b #29	ENSGT00390000011048.f #33	ENSGT00940000159715 #34	ENSGT00940000161898 #35	ENSGT00390000011737	ENSGT00390000011439.w	ENSGT00940000162114	ENSGT00390000003838	ENSGT00590000083134.a.a
Cow	MODERN SPECIES	3	HTR2A (ENSBTAG00000013498) #9	SUCLA2 (ENSBTAG00000006759) #11	NUDT15 (ENSBTAG00000019501) #12	ENSBTAG00000050479	MED4 (ENSBTAG00000019502) #13	ENSBTAG00000024964	ITM2B (ENSBTAG00000003109) #15	ENSBTAG00000003560	RB1 (ENSBTAG00000006640) #16	LPAR6 (ENSBTAG00000006645) #17	RCBTB2 (ENSBTAG00000006647) #18	CYSLTR2 (ENSBTAG00000017508)	ENSBTAG00000048524	FNDC3A (ENSBTAG00000020681) #20	MLNR (ENSBTAG00000010475) #21	CDADC1 (ENSBTAG00000002271) #22	CAB39L (ENSBTAG00000034222) #23	ENSBTAG00000049254	SETDB2 (ENSBTAG00000007329) #24	PHF11 (ENSBTAG00000013159) #25	RCBTB1 (ENSBTAG00000034269) #26	ARL11 (ENSBTAG00000016998) #27	EBPL (ENSBTAG00000018410) #28	KPNA3 (ENSBTAG00000004850) #29	SPRYD7 (ENSBTAG00000018829) #33	TRIM13 (ENSBTAG00000008173) #34	KCNRG (ENSBTAG00000008176) #35	DLEU7 (ENSBTAG00000055114)	ENSBTAG00000049315	RNASEH2B (ENSBTAG00000020149)	ENSBTAG00000007457
Hybrid Bos Indicus	MODERN SPECIES	3	ESD (ENSBIXG00005003676) #8	HTR2A (ENSBIXG00005021735) #9	SUCLA2 (ENSBIXG00005021655) #11	ENSBIXG00005021596	MED4 (ENSBIXG00005000006) #13	ENSBIXG00005021562	ITM2B (ENSBIXG00005021532) #15	RB1 (ENSBIXG00005021439) #16	ENSBIXG00005021411	LPAR6 (ENSBIXG00005021400) #17	RCBTB2 (ENSBIXG00005021378) #18	ENSBIXG00005003584	ENSBIXG00005021203	FNDC3A (ENSBIXG00005021155) #20	MLNR (ENSBIXG00005005745) #21	CDADC1 (ENSBIXG00005020968) #22	CAB39L (ENSBIXG00005020883) #23	SETDB2 (ENSBIXG00005020628) #24	PHF11 (ENSBIXG00005020432) #25	RCBTB1 (ENSBIXG00005003427) #26	ARL11 (ENSBIXG00005020314) #27	EBPL (ENSBIXG00005007836) #28	KPNA3 (ENSBIXG00005020259) #29	ENSBIXG00005020218	SPRYD7 (ENSBIXG00005020199) #33	TRIM13 (ENSBIXG00005003326) #34	DLEU7 (ENSBIXG00005020068)	ENSBIXG00005003277	ENSBIXG00005019941	C13orf42 (ENSBIXG00005019922)	ENSBIXG00005019899
American bison	MODERN SPECIES	2985												ENSBBBG00000000897	ENSBBBG00000000886	FNDC3A (ENSBBBG00000003597) #20	MLNR (ENSBBBG00000014952) #21	CDADC1 (ENSBBBG00000003699) #22	CAB39L (ENSBBBG00000015003) #23	ENSBBBG00000015012	SETDB2 (ENSBBBG00000015067) #24	ENSBBBG00000015076	PHF11 (ENSBBBG00000015109) #25	RCBTB1 (ENSBBBG00000015137) #26	ARL11 (ENSBBBG00000015149) #27	EBPL (ENSBBBG00000003757) #28	KPNA3 (ENSBBBG00000003539) #29	SPRYD7 (ENSBBBG00000015182) #33	TRIM13 (ENSBBBG00000003768) #34	KCNRG (ENSBBBG00000003771) #35	ENSBBBG00000015246	DLEU7 (ENSBBBG00000015254)	ENSBBBG00000001356
Siberian musk deer	MODERN SPECIES	18	RUBCNL (ENSMMSG00000013269)	LRCH1 (ENSMMSG00000013375) #7	ENSMMSG00000013450 #8	HTR2A (ENSMMSG00000013507) #9	SUCLA2 (ENSMMSG00000013529) #11	ENSMMSG00000013552 #12	MED4 (ENSMMSG00000013569) #13	ITM2B (ENSMMSG00000013606) #15	RB1 (ENSMMSG00000013661) #16	LPAR6 (ENSMMSG00000013747) #17	RCBTB2 (ENSMMSG00000013770) #18	ENSMMSG00000013837	ENSMMSG00000013845	FNDC3A (ENSMMSG00000013859) #20	MLNR (ENSMMSG00000013954) #21	CDADC1 (ENSMMSG00000013980) #22	CAB39L (ENSMMSG00000014014) #23	SETDB2 (ENSMMSG00000014076) #24	ENSMMSG00000014134 #25	RCBTB1 (ENSMMSG00000014208) #26	ARL11 (ENSMMSG00000014242) #27	EBPL (ENSMMSG00000014258) #28	KPNA3 (ENSMMSG00000014287) #29	SPRYD7 (ENSMMSG00000014349) #33	TRIM13 (ENSMMSG00000014380) #34	KCNRG (ENSMMSG00000014388) #35	RNASEH2B (ENSMMSG00000014495)	ENSMMSG00000014954	C13orf42 (ENSMMSG00000015008)	FAM124A (ENSMMSG00000015030)	SERPINE3 (ENSMMSG00000015050)
Camelidae	ANCESTRAL SPECIES	14	ENSGT00710000106860	ENSGT00940000160585	ENSGT00940000159528 #7	ENSGT00390000011864 #8	ENSGT01050000244937.a.a #9	ENSGT00390000010170.a.b #11	ENSGT00390000003338 #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #15	ENSGT00950000183202.b #16	ENSGT01040000240444.A.a.a.a.a #17	ENSGT00940000158925 #18	ENSGT01100000263536.B.c.a #19	ENSGT00940000159319 #20	ENSGT01100000263484.C.a #21	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000169427	ENSGT00940000158209 #24	ENSGT00950000182865.b.a.b.b.b.a #25	ENSGT00940000155814 #26	ENSGT00940000162731 #27	ENSGT00530000063715.b #28	ENSGT01050000244891.C.c.b #29	ENSGT00390000011048.f #33	ENSGT00940000159715 #34	ENSGT00940000161898 #35	ENSGT00390000011737	ENSGT00390000011439	ENSGT00940000162114	ENSGT00390000003838
Arabian camel	MODERN SPECIES	5	LRRC63 (ENSCDRG00005007325)	RUBCNL (ENSCDRG00005007250)	LRCH1 (ENSCDRG00005006972) #7	ESD (ENSCDRG00005006888) #8	HTR2A (ENSCDRG00005006846) #9	SUCLA2 (ENSCDRG00005006774) #11	NUDT15 (ENSCDRG00005006741) #12	MED4 (ENSCDRG00005006678) #13	ITM2B (ENSCDRG00005006517) #15	LPAR6 (ENSCDRG00005006495) #17	RB1 (ENSCDRG00005006166) #16	RCBTB2 (ENSCDRG00005006061) #18	CYSLTR2 (ENSCDRG00005006039) #19	FNDC3A (ENSCDRG00005005830) #20	ENSCDRG00005005809	CDADC1 (ENSCDRG00005005787) #22	CAB39L (ENSCDRG00005005746) #23	SETDB2 (ENSCDRG00005005649) #24	PHF11 (ENSCDRG00005005613) #25	RCBTB1 (ENSCDRG00005005547) #26	ARL11 (ENSCDRG00005005538) #27	EBPL (ENSCDRG00005005531) #28	KPNA3 (ENSCDRG00005005457) #29	SPRYD7 (ENSCDRG00005005409) #33	TRIM13 (ENSCDRG00005005392) #34	KCNRG (ENSCDRG00005021727) #35	DLEU7 (ENSCDRG00005021724)	RNASEH2B (ENSCDRG00005021675)	ENSCDRG00005021654	C13orf42 (ENSCDRG00005021652)	ENSCDRG00005021649
Alpaca	MODERN SPECIES	3283														FNDC3A (ENSVPAG00000012009) #20	MLNR (ENSVPAG00000012011) #21	CDADC1 (ENSVPAG00000012012) #22	CAB39L (ENSVPAG00000012014) #23	ENSVPAG00000012017	SETDB2 (ENSVPAG00000012019) #24	PHF11 (ENSVPAG00000012021) #25	RCBTB1 (ENSVPAG00000012022) #26	EBPL (ENSVPAG00000012027) #28
Laurasiatheria_b	ANCESTRAL SPECIES	21	ENSGT00710000106860	ENSGT00940000160585	ENSGT00940000159528 #7	ENSGT00390000011864 #8	ENSGT01050000244937.a.a #9	ENSGT00390000010170.a.b #11	ENSGT00390000003338 #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #15	ENSGT00950000183202.b #16	ENSGT01040000240444.A.a.a.a.a #17	ENSGT00940000158925 #18	ENSGT01100000263536.B.c.a #19	ENSGT00940000159319 #20	ENSGT01100000263484.C.a #21	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #24	ENSGT00950000182865.b.a.b.b.b.a #25	ENSGT00940000155814 #26	ENSGT00940000162731 #27	ENSGT00530000063715.b #28	ENSGT01050000244891.C.c.b #29	ENSGT00390000011048.f #33	ENSGT00940000159715 #34	ENSGT00940000161898 #35	ENSGT00390000011737	ENSGT00390000011439	ENSGT00940000162114	ENSGT00390000003838	ENSGT00590000083134.a.a
Laurasiatheria_c	ANCESTRAL SPECIES	22	ENSGT00710000106860	ENSGT00940000160585	ENSGT00940000159528 #7	ENSGT00390000011864 #8	ENSGT01050000244937.a.a #9	ENSGT00390000010170.a.b #11	ENSGT00390000003338 #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #15	ENSGT00950000183202.b #16	ENSGT01040000240444.A.a.a.a.a #17	ENSGT00940000158925 #18	ENSGT01100000263536.B.c.a #19	ENSGT00940000159319 #20	ENSGT01100000263484.C.a #21	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #24	ENSGT00950000182865.b.a.b.b.b.a #25	ENSGT00940000155814 #26	ENSGT00940000162731 #27	ENSGT00530000063715.b #28	ENSGT01050000244891.C.c.b #29	ENSGT00390000011048.f #33	ENSGT00940000159715 #34	ENSGT00940000161898 #35	ENSGT00390000011737	ENSGT00390000011439	ENSGT00940000162114	ENSGT00390000003838	ENSGT00590000083134.a.a
Equus	ANCESTRAL SPECIES	26	ENSGT00710000106860	ENSGT00940000160585	ENSGT00940000159528 #7	ENSGT00390000011864.k #8	ENSGT01050000244937.a.a #9	ENSGT00390000010170.a.b #11	ENSGT00390000003338 #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #15	ENSGT00950000183202.b #16	ENSGT01040000240444.A.a.a.a.a #17	ENSGT00940000158925 #18	ENSGT01100000263536.B.c.a #19	ENSGT00940000159319 #20	ENSGT01100000263484.C.a #21	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #24	ENSGT00950000182865.b.a.b.b.b.a #25	ENSGT00940000155814 #26	ENSGT00940000162731 #27	ENSGT00530000063715.b #28	ENSGT01050000244891.C.c.b #29	ENSGT00390000011048.f #33	ENSGT00940000159715 #34	ENSGT01100000263511.a.c.b.a.b	ENSGT00390000011737	ENSGT00390000011439	ENSGT00940000162114	ENSGT00390000003838	ENSGT00590000083134.a.a
Donkey	MODERN SPECIES	29									ENSEASG00005017162 #15	RB1 (ENSEASG00005017186) #16	LPAR6 (ENSEASG00005027837) #17	RCBTB2 (ENSEASG00005017255) #18	CYSLTR2 (ENSEASG00005031909) #19	FNDC3A (ENSEASG00005017264) #20	MLNR (ENSEASG00005017269) #21	CDADC1 (ENSEASG00005017272) #22	CAB39L (ENSEASG00005017281) #23	ENSEASG00005017284	SETDB2 (ENSEASG00005017285) #24	PHF11 (ENSEASG00005017288) #25	RCBTB1 (ENSEASG00005017291) #26	ARL11 (ENSEASG00005034787) #27	EBPL (ENSEASG00005017294) #28	KPNA3 (ENSEASG00005017295) #29	SPRYD7 (ENSEASG00005034019) #33	TRIM13 (ENSEASG00005032508) #34	ENSEASG00005026329	DLEU7 (ENSEASG00005017321)	RNASEH2B (ENSEASG00005017323)	ENSEASG00005017325	C13orf42 (ENSEASG00005029220)
Horse	MODERN SPECIES	8	RUBCNL (ENSECAG00000016721)	LRCH1 (ENSECAG00000024376) #7	ESD (ENSECAG00000024350) #8	HTR2A (ENSECAG00000024282) #9	SUCLA2 (ENSECAG00000011122) #11	NUDT15 (ENSECAG00000010019) #12	MED4 (ENSECAG00000024240) #13	ITM2B (ENSECAG00000013050) #15	LPAR6 (ENSECAG00000004913) #17	RB1 (ENSECAG00000014575) #16	RCBTB2 (ENSECAG00000022606) #18	CYSLTR2 (ENSECAG00000004678) #19	ENSECAG00000054403	FNDC3A (ENSECAG00000023697) #20	MLNR (ENSECAG00000035160) #21	CDADC1 (ENSECAG00000020688) #22	ENSECAG00000045480	CAB39L (ENSECAG00000000879) #23	SETDB2 (ENSECAG00000020357) #24	PHF11 (ENSECAG00000014972) #25	RCBTB1 (ENSECAG00000021791) #26	ARL11 (ENSECAG00000004611) #27	EBPL (ENSECAG00000021272) #28	KPNA3 (ENSECAG00000015530) #29	SPRYD7 (ENSECAG00000011472) #33	TRIM13 (ENSECAG00000047808) #34	ENSECAG00000059596	DLEU7 (ENSECAG00000006759)	RNASEH2B (ENSECAG00000014262)	ENSECAG00000000195	C13orf42 (ENSECAG00000033040)
Chiroptera	ANCESTRAL SPECIES	65	ENSGT00710000106860	ENSGT00940000160585	ENSGT00940000159528 #7	ENSGT00390000011864 #8	ENSGT01050000244937.a.a #9	ENSGT00390000010170.a.b #11	ENSGT00390000003338 #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #15	ENSGT00950000183202.b #16	ENSGT01040000240444.A.a.a.a.a #17	ENSGT00940000158925 #18	ENSGT01100000263536.B.c.a #19	ENSGT00940000159319 #20	ENSGT01100000263484.C.a #21	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #24	ENSGT00950000182865.b.a.b.b.b.a #25	ENSGT00940000155814 #26	ENSGT00940000162731 #27	ENSGT00530000063715.b #28	ENSGT01050000244891.C.c.b #29	ENSGT00390000011048.f #33	ENSGT00940000159715 #34	ENSGT00940000161898 #35	ENSGT00390000011737	ENSGT00390000011439	ENSGT00940000162114	ENSGT00390000003838	ENSGT00590000083134.a.a
Microchiroptera	ANCESTRAL SPECIES	58	ENSGT00710000106860	ENSGT00940000160585	ENSGT00940000159528 #7	ENSGT00390000011864 #8	ENSGT01050000244937.a.a #9	ENSGT00390000010170.a.b #11	ENSGT00390000003338 #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #15	ENSGT00950000183202.b #16	ENSGT01040000240444.A.a.a.a.a #17	ENSGT00940000158925 #18	ENSGT01100000263536.B.c.a #19	ENSGT00940000159319 #20	ENSGT01100000263484.C.a #21	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #24	ENSGT00950000182865.b.a.b.b.b.a #25	ENSGT00940000155814 #26	ENSGT00940000162731 #27	ENSGT00530000063715.b #28	ENSGT01050000244891.C.c.b #29	ENSGT00390000011048.f #33	ENSGT00940000159715 #34	ENSGT00940000161898 #35	ENSGT00390000011737	ENSGT00390000011439	ENSGT00390000003838	ENSGT00590000083134.a.a	ENSGT00940000160941
Greater horseshoe bat	MODERN SPECIES	22	LRCH1 (ENSRFEG00010001090) #7	ENSRFEG00010001044 #8	HTR2A (ENSRFEG00010001008) #9	SUCLA2 (ENSRFEG00010000964) #11	NUDT15 (ENSRFEG00010000941) #12	MED4 (ENSRFEG00010000908) #13	ENSRFEG00010000895	ITM2B (ENSRFEG00010000875) #15	LPAR6 (ENSRFEG00010000857) #17	RB1 (ENSRFEG00010000766) #16	RCBTB2 (ENSRFEG00010000664) #18	CYSLTR2 (ENSRFEG00010000615) #19	ENSRFEG00010000603	FNDC3A (ENSRFEG00010000465) #20	MLNR (ENSRFEG00010000358) #21	CDADC1 (ENSRFEG00010000313) #22	CAB39L (ENSRFEG00010000253) #23	SETDB2 (ENSRFEG00010020537) #24	PHF11 (ENSRFEG00010020499) #25	RCBTB1 (ENSRFEG00010020444) #26	ARL11 (ENSRFEG00010020430) #27	ENSRFEG00010020394 #28	KPNA3 (ENSRFEG00010020282) #29	SPRYD7 (ENSRFEG00010020230) #33	ENSRFEG00010020217	TRIM13 (ENSRFEG00010020213) #34	KCNRG (ENSRFEG00010020187) #35	DLEU7 (ENSRFEG00010020159)	RNASEH2B (ENSRFEG00010020021)	C13orf42 (ENSRFEG00010019956)	FAM124A (ENSRFEG00010019925)
Microbat	MODERN SPECIES	944	ENSMLUG00000017709	SLC25A30 (ENSMLUG00000000506)	COG3 (ENSMLUG00000016157)	ENSMLUG00000026302	CBY2 (ENSMLUG00000010896)	SIAH3 (ENSMLUG00000029013)	ENSMLUG00000013512	ITM2B (ENSMLUG00000008317) #15	RB1 (ENSMLUG00000008336) #16	LPAR6 (ENSMLUG00000029722) #17	RCBTB2 (ENSMLUG00000008378) #18	ENSMLUG00000023372	CYSLTR2 (ENSMLUG00000001386) #19	FNDC3A (ENSMLUG00000002625) #20	ENSMLUG00000007659 #21	CDADC1 (ENSMLUG00000003033) #22	CAB39L (ENSMLUG00000002144) #23	SETDB2 (ENSMLUG00000004378) #24	PHF11 (ENSMLUG00000009816) #25	RCBTB1 (ENSMLUG00000003275) #26	ARL11 (ENSMLUG00000029560) #27	KPNA3 (ENSMLUG00000003364) #29	SPRYD7 (ENSMLUG00000011053) #33	TRIM13 (ENSMLUG00000029988) #34	KCNRG (ENSMLUG00000008136) #35	DLEU7 (ENSMLUG00000028199)	ENSMLUG00000016558	FAM124A (ENSMLUG00000000843)	ENSMLUG00000029387	INTS6 (ENSMLUG00000000852)	WDFY2 (ENSMLUG00000016015)
Megabat	MODERN SPECIES	3748																CDADC1 (ENSPVAG00000003655) #22	CAB39L (ENSPVAG00000003659) #23
Carnivora	ANCESTRAL SPECIES	23	ENSGT00710000106860	ENSGT00940000160585	ENSGT00940000159528 #7	ENSGT00390000011864 #8	ENSGT01050000244937.a.a #9	ENSGT00390000010170.a.b #11	ENSGT00390000003338 #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #15	ENSGT00950000183202.b #16	ENSGT01040000240444.A.a.a.a.a #17	ENSGT00940000158925 #18	ENSGT01100000263536.B.c.a #19	ENSGT00940000159319 #20	ENSGT01100000263484.C.a #21	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #24	ENSGT00950000182865.b.a.b.b.b.a #25	ENSGT00940000155814 #26	ENSGT00940000162731 #27	ENSGT00530000063715.b #28	ENSGT01050000244891.C.c.b #29	ENSGT00390000011048.f #33	ENSGT00940000159715 #34	ENSGT00940000161898 #35	ENSGT00390000011737	ENSGT00390000011439	ENSGT00940000162114	ENSGT00390000003838	ENSGT00590000083134.a.a
Felidae	ANCESTRAL SPECIES	23	ENSGT00710000106860	ENSGT00940000160585	ENSGT00940000159528 #7	ENSGT00390000011864.h #8	ENSGT01050000244937.a.a #9	ENSGT00390000010170.a.b.q #11	ENSGT00390000003338 #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #15	ENSGT00950000183202.b #16	ENSGT01040000240444.A.a.a.a.a #17	ENSGT00940000158925 #18	ENSGT01100000263536.B.c.a #19	ENSGT00940000159319 #20	ENSGT01100000263484.C.a #21	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #24	ENSGT00950000182865.b.a.b.b.b.a #25	ENSGT00940000155814 #26	ENSGT00530000063715.b #28	ENSGT01050000244891.C.c.b #29	ENSGT00390000011048.f #33	ENSGT00940000159715 #34	ENSGT00940000161898 #35	ENSGT00390000011737	ENSGT00390000011439	ENSGT00940000162114	ENSGT00390000003838	ENSGT00590000083134.a.a	ENSGT00940000160941
Panthera	ANCESTRAL SPECIES	21	ENSGT00950000183097.a.a.b	ENSGT00710000106860	ENSGT00940000160585	ENSGT00940000159528 #7	ENSGT00390000011864.h #8	ENSGT01050000244937.a.a #9	ENSGT00390000010170.a.b.q #11	ENSGT00390000003338 #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #15	ENSGT00950000183202.b #16	ENSGT01040000240444.A.a.a.a.a #17	ENSGT00940000158925 #18	ENSGT00940000159319 #20	ENSGT01100000263484.C.a #21	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #24	ENSGT00950000182865.b.a.b.b.b.a #25	ENSGT00940000155814 #26	ENSGT00530000063715.b #28	ENSGT01050000244891.C.c.b #29	ENSGT00390000011048.f #33	ENSGT00940000159715 #34	ENSGT00940000161898 #35	ENSGT00390000011737	ENSGT00390000011439	ENSGT00940000162114	ENSGT00390000003838	ENSGT00590000083134.a.a	ENSGT00940000160941
Tiger	MODERN SPECIES	575																CDADC1 (ENSPTIG00000009716) #22	CAB39L (ENSPTIG00000008619) #23	SETDB2 (ENSPTIG00000006314) #24	PHF11 (ENSPTIG00000002834) #25	RCBTB1 (ENSPTIG00000019455) #26	EBPL (ENSPTIG00000018009) #28	KPNA3 (ENSPTIG00000016265) #29	SPRYD7 (ENSPTIG00000015830) #33	TRIM13 (ENSPTIG00000002828) #34	KCNRG (ENSPTIG00000014997) #35	RNASEH2B (ENSPTIG00000013918)	ENSPTIG00000012873	C13orf42 (ENSPTIG00000011878)	FAM124A (ENSPTIG00000011118)	SERPINE3 (ENSPTIG00000010165)	INTS6 (ENSPTIG00000006964)
Panthera_a	ANCESTRAL SPECIES	23	ENSGT00710000106860	ENSGT00940000160585	ENSGT00940000159528 #7	ENSGT00390000011864.h #8	ENSGT01050000244937.a.a #9	ENSGT00390000010170.a.b.q #11	ENSGT00390000003338 #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #15	ENSGT00950000183202.b #16	ENSGT01040000240444.A.a.a.a.a #17	ENSGT00940000158925 #18	ENSGT01100000263536.B.c.a #19	ENSGT00940000159319 #20	ENSGT01100000263484.C.a #21	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #24	ENSGT00950000182865.b.a.b.b.b.a #25	ENSGT00940000155814 #26	ENSGT00530000063715.b #28	ENSGT01050000244891.C.c.b #29	ENSGT00390000011048.f #33	ENSGT00940000159715 #34	ENSGT00940000161898 #35	ENSGT00390000011737	ENSGT00390000011439	ENSGT00940000162114	ENSGT00390000003838	ENSGT00590000083134.a.a	ENSGT00940000160941
leopard	MODERN SPECIES	14	LCP1 (ENSPPRG00000003176)	LRRC63 (ENSPPRG00000001903)	RUBCNL (ENSPPRG00000000386)	LRCH1 (ENSPPRG00000015849) #7	ENSPPRG00000012285 #8	HTR2A (ENSPPRG00000011866) #9	ENSPPRG00000011431	ENSPPRG00000011389 #11	NUDT15 (ENSPPRG00000010318) #12	MED4 (ENSPPRG00000009988) #13	ITM2B (ENSPPRG00000009808) #15	RB1 (ENSPPRG00000008573) #16	RCBTB2 (ENSPPRG00000005884) #18	FNDC3A (ENSPPRG00000003779) #20	MLNR (ENSPPRG00000002089) #21	CDADC1 (ENSPPRG00000001969) #22	CAB39L (ENSPPRG00000001618) #23	SETDB2 (ENSPPRG00000000069) #24	PHF11 (ENSPPRG00000023438) #25	RCBTB1 (ENSPPRG00000023734) #26	EBPL (ENSPPRG00000020311) #28	KPNA3 (ENSPPRG00000015323) #29	SPRYD7 (ENSPPRG00000014014) #33	TRIM13 (ENSPPRG00000014965) #34	KCNRG (ENSPPRG00000013117) #35	DLEU7 (ENSPPRG00000012760)	RNASEH2B (ENSPPRG00000012450)	ENSPPRG00000011237	C13orf42 (ENSPPRG00000010617)	FAM124A (ENSPPRG00000010260)	SERPINE3 (ENSPPRG00000009827)
lion	MODERN SPECIES	117														FNDC3A (ENSPLOG00000008901) #20	MLNR (ENSPLOG00000008837) #21	CDADC1 (ENSPLOG00000008771) #22
Cat	MODERN SPECIES		RUBCNL (ENSFCAG00000010241)	LRCH1 (ENSFCAG00000034620) #7	ESD (ENSFCAG00000026826) #8	HTR2A (ENSFCAG00000036489) #9	ENSFCAG00000026862	SUCLA2 (ENSFCAG00000031559) #11	NUDT15 (ENSFCAG00000035004) #12	MED4 (ENSFCAG00000015321) #13	ITM2B (ENSFCAG00000039896) #15	LPAR6 (ENSFCAG00000006998) #17	RB1 (ENSFCAG00000024529) #16	RCBTB2 (ENSFCAG00000006999) #18	CYSLTR2 (ENSFCAG00000040666) #19	FNDC3A (ENSFCAG00000030680) #20	MLNR (ENSFCAG00000014268) #21	CDADC1 (ENSFCAG00000014269) #22	CAB39L (ENSFCAG00000014270) #23	SETDB2 (ENSFCAG00000012034) #24	PHF11 (ENSFCAG00000013097) #25	RCBTB1 (ENSFCAG00000044002) #26	EBPL (ENSFCAG00000033196) #28	KPNA3 (ENSFCAG00000023386) #29	SPRYD7 (ENSFCAG00000023216) #33	TRIM13 (ENSFCAG00000028107) #34	KCNRG (ENSFCAG00000031784) #35	RNASEH2B (ENSFCAG00000014257)	ENSFCAG00000014259	C13orf42 (ENSFCAG00000040832)	FAM124A (ENSFCAG00000043387)	SERPINE3 (ENSFCAG00000018195)	INTS6 (ENSFCAG00000030967)
Caniformia	ANCESTRAL SPECIES	24	ENSGT00710000106860	ENSGT00940000160585	ENSGT00940000159528 #7	ENSGT00390000011864 #8	ENSGT01050000244937.a.a #9	ENSGT00390000010170.a.b #11	ENSGT00390000003338 #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #15	ENSGT00950000183202.b #16	ENSGT01040000240444.A.a.a.a.a #17	ENSGT00940000158925 #18	ENSGT01100000263536.B.c.a #19	ENSGT00940000159319 #20	ENSGT01100000263484.C.a #21	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #24	ENSGT00950000182865.b.a.b.b.b.a #25	ENSGT00940000155814 #26	ENSGT00940000162731 #27	ENSGT00530000063715.b #28	ENSGT01050000244891.C.c.b #29	ENSGT00390000011048.f #33	ENSGT00940000159715 #34	ENSGT00940000161898 #35	ENSGT00390000011737	ENSGT00390000011439	ENSGT00940000162114	ENSGT00390000003838	ENSGT00590000083134.a.a
Caniformia_b	ANCESTRAL SPECIES	26	ENSGT00710000106860	ENSGT00940000160585	ENSGT00940000159528 #7	ENSGT00390000011864 #8	ENSGT01050000244937.a.a #9	ENSGT00390000010170.a.b #11	ENSGT00390000003338 #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #15	ENSGT00950000183202.b #16	ENSGT01040000240444.A.a.a.a.a #17	ENSGT00940000158925 #18	ENSGT01100000263536.B.c.a #19	ENSGT00940000159319 #20	ENSGT01100000263484.C.a #21	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #24	ENSGT00950000182865.b.a.b.b.b.a #25	ENSGT00940000155814 #26	ENSGT00940000162731 #27	ENSGT00530000063715.b #28	ENSGT01050000244891.C.c.b #29	ENSGT00390000011048.f #33	ENSGT00940000159715 #34	ENSGT00940000161898 #35	ENSGT00390000011737	ENSGT00390000011439	ENSGT00940000162114	ENSGT00390000003838	ENSGT00590000083134.a.a
Ursidae	ANCESTRAL SPECIES	27	ENSGT00710000106860	ENSGT00940000160585	ENSGT00940000159528 #7	ENSGT00390000011864 #8	ENSGT01050000244937.a.a #9	ENSGT00390000010170.a.b.t #11	ENSGT00390000003338 #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a.j #15	ENSGT00950000183202.b #16	ENSGT01040000240444.A.a.a.a.a #17	ENSGT00940000158925 #18	ENSGT01100000263536.B.c.a #19	ENSGT00940000159319 #20	ENSGT01100000263484.C.a #21	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #24	ENSGT00950000182865.b.a.b.b.b.a #25	ENSGT00940000155814 #26	ENSGT00940000162731 #27	ENSGT00530000063715.b #28	ENSGT01050000244891.C.c.b #29	ENSGT00390000011048.f #33	ENSGT00940000159715 #34	ENSGT00940000161898 #35	ENSGT00390000011737	ENSGT00390000011439	ENSGT00940000162114	ENSGT00390000003838	ENSGT00590000083134.a.a
Ursus	ANCESTRAL SPECIES	62	ENSGT00710000106860	ENSGT00940000160585	ENSGT00940000159528 #7	ENSGT00390000011864 #8	ENSGT01050000244937.a.a #9	ENSGT00390000010170.a.b.t #11	ENSGT00390000003338 #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a.j #15	ENSGT00950000183202.b #16	ENSGT01040000240444.A.a.a.a.a #17	ENSGT00940000158925 #18	ENSGT01100000263536.B.c.a #19	ENSGT00940000159319 #20	ENSGT01100000263484.C.a #21	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #24	ENSGT00950000182865.b.a.b.b.b.a #25	ENSGT00940000155814 #26	ENSGT00940000162731 #27	ENSGT00530000063715.b #28	ENSGT01050000244891.C.c.b #29	ENSGT00390000011048.f #33	ENSGT00940000159715 #34	ENSGT00940000161898 #35	ENSGT00390000011737	ENSGT00390000011439	ENSGT00940000162114	ENSGT00590000083134.a.a	ENSGT00940000160941
Polar bear	MODERN SPECIES	297	LCP1 (ENSUMAG00000016365)	LRRC63 (ENSUMAG00000017071)	RUBCNL (ENSUMAG00000017084)	LRCH1 (ENSUMAG00000017098) #7	ESD (ENSUMAG00000017188) #8	HTR2A (ENSUMAG00000017217) #9	SUCLA2 (ENSUMAG00000017396) #11	NUDT15 (ENSUMAG00000017950) #12	MED4 (ENSUMAG00000017955) #13	ITM2B (ENSUMAG00000017977) #15	RB1 (ENSUMAG00000018061) #16	LPAR6 (ENSUMAG00000018323) #17	RCBTB2 (ENSUMAG00000018329) #18	CYSLTR2 (ENSUMAG00000018356) #19	FNDC3A (ENSUMAG00000018363) #20	CDADC1 (ENSUMAG00000018372) #22	CAB39L (ENSUMAG00000018400) #23	SETDB2 (ENSUMAG00000018406) #24	PHF11 (ENSUMAG00000018410) #25	RCBTB1 (ENSUMAG00000018418) #26	ARL11 (ENSUMAG00000018435) #27	ENSUMAG00000018437 ##37	EBPL (ENSUMAG00000018439) #28	KPNA3 (ENSUMAG00000018450) #29	ENSUMAG00000018458 #33	TRIM13 (ENSUMAG00000018465) #34	KCNRG (ENSUMAG00000018468) #35	RNASEH2B (ENSUMAG00000018556)	ENSUMAG00000018627	FAM124A (ENSUMAG00000018662)	SERPINE3 (ENSUMAG00000018670)
American black bear	MODERN SPECIES	689														FNDC3A (ENSUAMG00000005934) #20	MLNR (ENSUAMG00000005931) #21	CDADC1 (ENSUAMG00000005913) #22	CAB39L (ENSUAMG00000005909) #23
Giant Panda	MODERN SPECIES	17	LRRC63 (ENSAMEG00000013282)	RUBCNL (ENSAMEG00000013284)	LRCH1 (ENSAMEG00000013313) #7	ESD (ENSAMEG00000013377) #8	HTR2A (ENSAMEG00000025689) #9	SUCLA2 (ENSAMEG00000003745) #11	ENSAMEG00000003735 #12	MED4 (ENSAMEG00000003718) #13	ITM2B (ENSAMEG00000003662) #15	LPAR6 (ENSAMEG00000018637) #17	RB1 (ENSAMEG00000003640) #16	RCBTB2 (ENSAMEG00000003585) #18	CYSLTR2 (ENSAMEG00000018628) #19	FNDC3A (ENSAMEG00000003537) #20	MLNR (ENSAMEG00000003522) #21	CDADC1 (ENSAMEG00000003499) #22	CAB39L (ENSAMEG00000003487) #23	SETDB2 (ENSAMEG00000003443) #24	PHF11 (ENSAMEG00000026091) #25	RCBTB1 (ENSAMEG00000002770) #26	ARL11 (ENSAMEG00000002767) #27	EBPL (ENSAMEG00000002764) #28	KPNA3 (ENSAMEG00000004834) #29	SPRYD7 (ENSAMEG00000024680) #33	TRIM13 (ENSAMEG00000019144) #34	KCNRG (ENSAMEG00000029937) #35	DLEU7 (ENSAMEG00000031072)	RNASEH2B (ENSAMEG00000012040)	ENSAMEG00000012012	C13orf42 (ENSAMEG00000030295)	FAM124A (ENSAMEG00000012007)
Mustelinae	ANCESTRAL SPECIES	71	ENSGT00710000106860	ENSGT00940000160585	ENSGT00940000159528 #7	ENSGT00390000011864 #8	ENSGT01050000244937.a.a #9	ENSGT00390000010170.a.b #11	ENSGT00390000003338 #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #15	ENSGT00950000183202.b #16	ENSGT01040000240444.A.a.a.a.a #17	ENSGT00940000158925 #18	ENSGT01100000263536.B.c.a #19	ENSGT00940000159319 #20	ENSGT01100000263484.C.a #21	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #24	ENSGT00950000182865.b.a.b.b.b.a #25	ENSGT00940000155814 #26	ENSGT00940000162731 #27	ENSGT00530000063715.b #28	ENSGT01050000244891.C.c.b #29	ENSGT00390000011048.f #33	ENSGT00940000159715 #34	ENSGT00940000161898 #35	ENSGT00390000011737	ENSGT00390000011439	ENSGT00940000162114	ENSGT00390000003838	ENSGT00590000083134.a.a
Ferret	MODERN SPECIES	371														FNDC3A (ENSMPUG00000018023) #20	MLNR (ENSMPUG00000018022) #21	CDADC1 (ENSMPUG00000018021) #22	CAB39L (ENSMPUG00000018020) #23	SETDB2 (ENSMPUG00000018019) #24	PHF11 (ENSMPUG00000018018) #25	RCBTB1 (ENSMPUG00000018017) #26	ARL11 (ENSMPUG00000018376) #27	EBPL (ENSMPUG00000018016) #28	KPNA3 (ENSMPUG00000018015) #29	SPRYD7 (ENSMPUG00000018014) #33	TRIM13 (ENSMPUG00000018013) #34	ENSMPUG00000018012	DLEU7 (ENSMPUG00000018011)	RNASEH2B (ENSMPUG00000018010)	ENSMPUG00000018009	FAM124A (ENSMPUG00000018008)	ENSMPUG00000018007
American mink	MODERN SPECIES	143						SUCLA2 (ENSNVIG00000011068) #11	NUDT15 (ENSNVIG00000011088) #12	MED4 (ENSNVIG00000011094) #13	ITM2B (ENSNVIG00000011114) #15	RB1 (ENSNVIG00000011152) #16	LPAR6 (ENSNVIG00000011245) #17	RCBTB2 (ENSNVIG00000011257) #18	CYSLTR2 (ENSNVIG00000011311) #19	FNDC3A (ENSNVIG00000011325) #20	MLNR (ENSNVIG00000011471) #21	CDADC1 (ENSNVIG00000011480) #22	CAB39L (ENSNVIG00000011562) #23	SETDB2 (ENSNVIG00000011619) #24	PHF11 (ENSNVIG00000011653) #25	RCBTB1 (ENSNVIG00000011679) #26	ARL11 (ENSNVIG00000011736) #27	ENSNVIG00000011744	KPNA3 (ENSNVIG00000011752) #29	SPRY7 (ENSNVIG00000011792) #33	TRIM13 (ENSNVIG00000011831) #34	KCNRG (ENSNVIG00000011840) #35	ENSNVIG00000011940	DLEU7 (ENSNVIG00000011945)	RNASEH2B (ENSNVIG00000011978)	ENSNVIG00000012115	C13orf42 (ENSNVIG00000012138)
Canidae	ANCESTRAL SPECIES	38	ENSGT00710000106860	ENSGT00940000160585	ENSGT00940000159528 #7	ENSGT00390000011864 #8	ENSGT01050000244937.a.a #9	ENSGT00390000010170.a.b #11	ENSGT00390000003338 #12	ENSGT00390000012063.h #13	ENSGT00950000183115.b.a #15	ENSGT01040000240444.A.a.a.a.a #17	ENSGT00950000183202.b #16	ENSGT00940000158925 #18	ENSGT01100000263536.B.c.a #19	ENSGT00940000159319 #20	ENSGT01100000263484.C.a #21	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #24	ENSGT00950000182865.b.a.b.b.b.a #25	ENSGT00940000155814 #26	ENSGT00530000063715.b #28	ENSGT01050000244891.C.c.b #29	ENSGT00390000011048.f #33	ENSGT00940000159715 #34	ENSGT00940000161898 #35	ENSGT00390000011439	ENSGT00940000162114	ENSGT00590000083134.a.a	ENSGT00940000160941	ENSGT00390000016655.a.a.b	ENSGT00940000158527
Canis_lupus	ANCESTRAL SPECIES	35	ENSGT00710000106860	ENSGT00940000160585	ENSGT00940000159528 #7	ENSGT00390000011864 #8	ENSGT01050000244937.a.a #9	ENSGT00390000010170.a.b #11	ENSGT00390000003338 #12	ENSGT00390000012063.h #13	ENSGT00950000183115.b.a #15	ENSGT00950000183202.b #16	ENSGT01040000240444.A.a.a.a.a #17	ENSGT00940000158925 #18	ENSGT01100000263536.B.c.a #19	ENSGT00940000159319 #20	ENSGT01100000263484.C.a #21	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #24	ENSGT00950000182865.b.a.b.b.b.a #25	ENSGT00940000155814 #26	ENSGT00530000063715.b #28	ENSGT01050000244891.C.c.b #29	ENSGT00390000011048.f #33	ENSGT00940000159715 #34	ENSGT00940000161898 #35	ENSGT00390000011439	ENSGT00940000162114	ENSGT00590000083134.a.a	ENSGT00940000160941	ENSGT00390000016655.a.a.b	ENSGT00940000158527
Dog	MODERN SPECIES	14	HTR2A (ENSCAFG00845007028) #9	ENSCAFG00845006976	ENSCAFG00845006950	ENSCAFG00845006932	SUCLA2 (ENSCAFG00845006827) #11	NUDT15 (ENSCAFG00845006770) #12	MED4 (ENSCAFG00845006629) #13	ITM2B (ENSCAFG00845006529) #15	ENSCAFG00845026714 #17	ENSCAFG00845026699 #17	RB1 (ENSCAFG00845025645) #16	RCBTB2 (ENSCAFG00845025268) #18	CYSLTR2 (ENSCAFG00845025181) #19	FNDC3A (ENSCAFG00845024522) #20	MLNR (ENSCAFG00845024409) #21	CDADC1 (ENSCAFG00845024154) #22	CAB39L (ENSCAFG00845024041) #23	SETDB2 (ENSCAFG00845023636) #24	SETDB2 (ENSCAFG00845023394) #25	RCBTB1 (ENSCAFG00845023241) #26	ENSCAFG00845023177	ENSCAFG00845023073 #28	KPNA3 (ENSCAFG00845022909) #29	SPRYD7 (ENSCAFG00845022814) #33	TRIM13 (ENSCAFG00845022686) #34	RNASEH2B (ENSCAFG00845022142)	ENSCAFG00845021910	ENSCAFG00845021832	SERPINE3 (ENSCAFG00845021761)	INTS6 (ENSCAFG00845021506)	WDFY2 (ENSCAFG00845021352)
Dingo	MODERN SPECIES	7	ENSCAFG00020019395	ENSCAFG00020019401	ENSCAFG00020019402	ENSCAFG00020019404	ENSCAFG00020019406	SUCLA2 (ENSCAFG00020019425) #11	NUDT15 (ENSCAFG00020019998) #12	ENSCAFG00020020001 #13	ITM2B (ENSCAFG00020020009) #15	RB1 (ENSCAFG00020020016) #16	LPAR6 (ENSCAFG00020020122) #17	RCBTB2 (ENSCAFG00020020123) #18	CYSLTR2 (ENSCAFG00020020126) #19	FNDC3A (ENSCAFG00020020131) #20	MLNR (ENSCAFG00020020252) #21	CDADC1 (ENSCAFG00020020254) #22	CAB39L (ENSCAFG00020020273) #23	SETDB2 (ENSCAFG00020020283) #24	PHF11 (ENSCAFG00020020287) #25	RCBTB1 (ENSCAFG00020020302) #26	EBPL (ENSCAFG00020020382) #28	KPNA3 (ENSCAFG00020020398) #29	SPRYD7 (ENSCAFG00020021570) #33	TRIM13 (ENSCAFG00020021573) #34	KCNRG (ENSCAFG00020021574) #35	RNASEH2B (ENSCAFG00020000250)	ENSCAFG00020000263	SERPINE3 (ENSCAFG00020000330)	INTS6 (ENSCAFG00020000372)	WDFY2 (ENSCAFG00020000388)	CCDC70 (ENSCAFG00020000401)
Red fox	MODERN SPECIES	133	ESD (ENSVVUG00000028341) #8	HTR2A (ENSVVUG00000028338) #9	ENSVVUG00000028335	ENSVVUG00000028325	SUCLA2 (ENSVVUG00000028321) #11	NUDT15 (ENSVVUG00000028320) #12	MED4 (ENSVVUG00000028319) #13	ITM2B (ENSVVUG00000028315) #15	LPAR6 (ENSVVUG00000028313) #17	RB1 (ENSVVUG00000028308) #16	RCBTB2 (ENSVVUG00000028249) #18	CYSLTR2 (ENSVVUG00000028233) #19	FNDC3A (ENSVVUG00000028213) #20	MLNR (ENSVVUG00000028204) #21	ENSVVUG00000028200	CDADC1 (ENSVVUG00000028192) #22	CAB39L (ENSVVUG00000028181) #23	SETDB2 (ENSVVUG00000028174) #24	PHF11 (ENSVVUG00000028159) #25	RCBTB1 (ENSVVUG00000028145) #26	ENSVVUG00000028141	KPNA3 (ENSVVUG00000028134) #29	SPRYD7 (ENSVVUG00000028130) #33	ENSVVUG00000028128 #35	TRIM13 (ENSVVUG00000028126) #34
Atlantogenata	ANCESTRAL SPECIES	27	ENSGT00710000106860	ENSGT00940000160585	ENSGT00940000159528 #7	ENSGT00390000011864 #8	ENSGT01050000244937.a.a #9	ENSGT00390000010170.a.b #11	ENSGT00390000003338 #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #15	ENSGT00950000183202.b #16	ENSGT01040000240444.A.a.a.a.a #17	ENSGT00940000158925 #18	ENSGT01100000263536.B.c.a #19	ENSGT00940000159319 #20	ENSGT01100000263484.C.a #21	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #24	ENSGT00950000182865.b.a.b.b.b.a #25	ENSGT00940000155814 #26	ENSGT00940000162731 #27	ENSGT00530000063715.b #28	ENSGT01050000244891.C.c.b #29	ENSGT00390000011048 #33	ENSGT00940000159715 #34	ENSGT00940000161898 #35	ENSGT00390000011439	ENSGT00940000162114	ENSGT00590000083134.a.a	ENSGT00940000160941	ENSGT00390000016655.a.a.b
Afrotheria	ANCESTRAL SPECIES	54	ENSGT00710000106860	ENSGT00940000160585	ENSGT00940000159528 #7	ENSGT00390000011864 #8	ENSGT01050000244937.a.a #9	ENSGT00390000010170.a.b #11	ENSGT00390000003338 #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #15	ENSGT00950000183202.b #16	ENSGT01040000240444.A.a.a.a.a #17	ENSGT00940000158925 #18	ENSGT01100000263536.B.c.a #19	ENSGT00940000159319 #20	ENSGT01100000263484.C.a #21	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #24	ENSGT00950000182865.b.a.b.b.b.a #25	ENSGT00940000155814 #26	ENSGT00940000162731 #27	ENSGT00530000063715.b #28	ENSGT01050000244891.C.c.b #29	ENSGT00390000011048 #33	ENSGT00940000159715 #34	ENSGT00940000161898 #35	ENSGT00390000011439	ENSGT00940000162114	ENSGT00590000083134.a.a	ENSGT00940000160941	ENSGT00390000016655.a.a.b
Tenrec	MODERN SPECIES	581																CDADC1 (ENSETEG00000007367) #22
Afrotheria_a	ANCESTRAL SPECIES	52	ENSGT00710000106860	ENSGT00940000160585	ENSGT00940000159528 #7	ENSGT00390000011864 #8	ENSGT01050000244937.a.a #9	ENSGT00390000010170.a.b #11	ENSGT00390000003338 #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #15	ENSGT00950000183202.b #16	ENSGT01040000240444.A.a.a.a.a #17	ENSGT00940000158925 #18	ENSGT01100000263536.B.c.a #19	ENSGT00940000159319 #20	ENSGT01100000263484.C.a #21	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #24	ENSGT00950000182865.b.a.b.b.b.a #25	ENSGT00940000155814 #26	ENSGT00940000162731 #27	ENSGT00530000063715.b #28	ENSGT01050000244891.C.c.b #29	ENSGT00390000011048 #33	ENSGT00940000159715 #34	ENSGT00940000161898 #35	ENSGT00390000011439	ENSGT00940000162114	ENSGT00590000083134.a.a	ENSGT00940000160941	ENSGT00390000016655.a.a.b
Elephant	MODERN SPECIES	239	RUBCNL (ENSLAFG00000014959)	LRCH1 (ENSLAFG00000006893) #7	ESD (ENSLAFG00000006901) #8	HTR2A (ENSLAFG00000015014) #9	SUCLA2 (ENSLAFG00000009678) #11	ENSLAFG00000027647	NUDT15 (ENSLAFG00000017248) #12	MED4 (ENSLAFG00000000347) #13	ITM2B (ENSLAFG00000004943) #15	RB1 (ENSLAFG00000013579) #16	LPAR6 (ENSLAFG00000031818) #17	RCBTB2 (ENSLAFG00000015596) #18	CYSLTR2 (ENSLAFG00000011232) #19	FNDC3A (ENSLAFG00000016935) #20	MLNR (ENSLAFG00000004763) #21	CDADC1 (ENSLAFG00000012861) #22	CAB39L (ENSLAFG00000018080) #23	SETDB2 (ENSLAFG00000012612) #24	PHF11 (ENSLAFG00000014189) #25	RCBTB1 (ENSLAFG00000014193) #26	ARL11 (ENSLAFG00000001838) #27	EBPL (ENSLAFG00000017971) #28	KPNA3 (ENSLAFG00000001298) #29	SPRYD7 (ENSLAFG00000004635) #33	TRIM13 (ENSLAFG00000029759) #34	KCNRG (ENSLAFG00000000702) #35	RNASEH2B (ENSLAFG00000030158)	ENSLAFG00000016562	FAM124A (ENSLAFG00000013090)	SERPINE3 (ENSLAFG00000023229)	INTS6 (ENSLAFG00000008496)
Hyrax	MODERN SPECIES	424																CDADC1 (ENSPCAG00000005477) #22
Xenarthra	ANCESTRAL SPECIES																	ENSGT00940000153676.b #22
Sloth	MODERN SPECIES	473																CDADC1 (ENSCHOG00000001642) #22
Armadillo	MODERN SPECIES	3810											ENSDNOG00000007441	ENSDNOG00000038087	BRINP2 (ENSDNOG00000036555)	ENSDNOG00000044709	SEC16B (ENSDNOG00000008336)	CDADC1 (ENSDNOG00000006418) #22	ENSDNOG00000047847	RASAL2 (ENSDNOG00000007919)	ENSDNOG00000034274	TEX35 (ENSDNOG00000018108)	RALGPS2 (ENSDNOG00000001836)	ANGPTL1 (ENSDNOG00000031349)	FAM20B (ENSDNOG00000049181)	TOR3A (ENSDNOG00000018172)	ABL2 (ENSDNOG00000037053)	ENSDNOG00000024026	ENSDNOG00000037146
Marsupialia	ANCESTRAL SPECIES	5	ENSGT00940000160585	ENSGT00940000159528 #7	ENSGT00390000011864 #8	ENSGT01050000244937.a.a #9	ENSGT00390000010170.a.b #11	ENSGT00390000003338 #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #15	ENSGT00950000183202.b #16	ENSGT01040000240444.A.a.a.a.a #17	ENSGT00940000158925 #18	ENSGT00990000203619.B	ENSGT00970000197615	ENSGT00940000159319 #20	ENSGT01100000263484.C.a #21	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #24	ENSGT00950000182865.b.a.b.b.b.a #25	ENSGT00940000155814 #26	ENSGT00940000162731 #27	ENSGT00530000063715.b #28	ENSGT01050000244891.C.c.b #29	ENSGT00390000011048 #33	ENSGT00940000159715 #34	ENSGT00940000161898 #35	ENSGT00390000011737	ENSGT00390000011439	ENSGT00940000162114	ENSGT00590000083134.a.a	ENSGT00940000160941
Opossum	MODERN SPECIES	3	HTR2A (ENSMODG00000011274) #9	SUCLA2 (ENSMODG00000011236) #11	ENSMODG00000029176	NUDT15 (ENSMODG00000039008) #12	ENSMODG00000011215	MED4 (ENSMODG00000011210) #13	ENSMODG00000051554	ENSMODG00000011189 #15	LPAR6 (ENSMODG00000011179) #17	RB1 (ENSMODG00000011168) #16	RCBTB2 (ENSMODG00000011140) #18	ENSMODG00000024101	ENSMODG00000048969	FNDC3A (ENSMODG00000011079) #20	MLNR (ENSMODG00000011007) #21	CDADC1 (ENSMODG00000010997) #22	CAB39L (ENSMODG00000010950) #23	SETDB2 (ENSMODG00000010929) #24	ENSMODG00000047466	ENSMODG00000027544 #25	RCBTB1 (ENSMODG00000010861) #26	ARL11 (ENSMODG00000024105) #27	EBPL (ENSMODG00000039408) #28	KPNA3 (ENSMODG00000010829) #29	ENSMODG00000010799 #33	TRIM13 (ENSMODG00000024106) #34	DLEU7 (ENSMODG00000010784)	RNASEH2B (ENSMODG00000010775)	ENSMODG00000010760	FAM124A (ENSMODG00000010734)	ENSMODG00000027988
Marsupialia_b	ANCESTRAL SPECIES	20	ENSGT00940000160585	ENSGT00940000159528 #7	ENSGT00390000011864 #8	ENSGT01050000244937.a.a #9	ENSGT00390000010170.a.b #11	ENSGT00390000003338 #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #15	ENSGT00950000183202.b #16	ENSGT01040000240444.A.a.a.a.a #17	ENSGT00940000158925 #18	ENSGT00990000203619.B	ENSGT00970000197615	ENSGT00940000159319 #20	ENSGT01100000263484.C.a #21	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #24	ENSGT00950000182865.b.a.b.b.b.a #25	ENSGT00940000155814 #26	ENSGT00940000162731 #27	ENSGT00530000063715.b #28	ENSGT01050000244891.C.c.b #29	ENSGT00390000011048 #33	ENSGT00940000159715 #34	ENSGT00940000161898 #35	ENSGT00390000011737	ENSGT00390000011439	ENSGT00940000162114	ENSGT00590000083134.a.a	ENSGT00940000160941
Tasmanian devil	MODERN SPECIES	2	LRCH1 (ENSSHAG00000009981) #7	ESD (ENSSHAG00000024732) #8	HTR2A (ENSSHAG00000008685) #9	SUCLA2 (ENSSHAG00000006415) #11	NUDT15 (ENSSHAG00000022268) #12	MED4 (ENSSHAG00000005253) #13	ENSSHAG00000005331	ITM2B (ENSSHAG00000014885) #15	RB1 (ENSSHAG00000014024) #16	LPAR6 (ENSSHAG00000027480) #17	RCBTB2 (ENSSHAG00000013842) #18	ENSSHAG00000012802	ENSSHAG00000023617	FNDC3A (ENSSHAG00000010067) #20	ENSSHAG00000030574	CDADC1 (ENSSHAG00000009406) #22	CAB39L (ENSSHAG00000029616) #23	SETDB2 (ENSSHAG00000007281) #24	RCBTB1 (ENSSHAG00000005837) #26	ARL11 (ENSSHAG00000004853) #27	EBPL (ENSSHAG00000026290) #28	KPNA3 (ENSSHAG00000002380) #29	SPRYD7 (ENSSHAG00000032291) #33	TRIM13 (ENSSHAG00000027943) #34	ENSSHAG00000026893	RNASEH2B (ENSSHAG00000016190)	ENSSHAG00000015825	ENSSHAG00000025257	FAM124A (ENSSHAG00000030020)	SERPINE3 (ENSSHAG00000014618)	INTS6 (ENSSHAG00000023547)
Diprotodontia	ANCESTRAL SPECIES	24	ENSGT00940000159528 #7	ENSGT00390000011864 #8	ENSGT01050000244937.a.a #9	ENSGT00390000010170.a.b #11	ENSGT00390000003338 #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #15	ENSGT00950000183202.b #16	ENSGT01040000240444.A.a.a.a.a #17	ENSGT00940000158925 #18	ENSGT01100000263536.B.c.a #19	ENSGT00990000203619.B	ENSGT00970000197615	ENSGT00940000159319 #20	ENSGT01100000263484.C.a #21	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #24	ENSGT00950000182865.b.a.b.b.b.a #25	ENSGT00940000155814 #26	ENSGT00940000162731 #27	ENSGT00530000063715.b #28	ENSGT01050000244891.C.c.b #29	ENSGT00390000011048 #33	ENSGT00940000159715 #34	ENSGT00940000161898 #35	ENSGT00390000011737	ENSGT00390000011439	ENSGT00940000162114	ENSGT00590000083134.a.a	ENSGT00940000160941
Diprotodontia_a	ANCESTRAL SPECIES	25	ENSGT00940000159528 #7	ENSGT00390000011864 #8	ENSGT01050000244937.a.a #9	ENSGT00390000010170.a.b #11	ENSGT00390000003338 #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #15	ENSGT00950000183202.b #16	ENSGT01040000240444.A.a.a.a.a #17	ENSGT00940000158925 #18	ENSGT01100000263536.B.c.a #19	ENSGT00990000203619.B	ENSGT00970000197615	ENSGT00940000159319 #20	ENSGT01100000263484.C.a #21	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #24	ENSGT00950000182865.b.a.b.b.b.a #25	ENSGT00940000155814 #26	ENSGT00940000162731 #27	ENSGT00530000063715.b #28	ENSGT01050000244891.C.c.b #29	ENSGT00390000011048 #33	ENSGT00940000159715 #34	ENSGT00940000161898 #35	ENSGT00390000011737	ENSGT00390000011439	ENSGT00940000162114	ENSGT00590000083134.a.a	ENSGT00940000160941
koala	MODERN SPECIES	53	HTR2A (ENSPCIG00000006885) #9	SUCLA2 (ENSPCIG00000016781) #11	ZCRB1 (ENSPCIG00000029300)	NUDT15 (ENSPCIG00000029301) #12	MED4 (ENSPCIG00000029302) #13	ENSPCIG00000029305	ITM2B (ENSPCIG00000029306) #15	RB1 (ENSPCIG00000029307) #16	LPAR6 (ENSPCIG00000029308) #17	RCBTB2 (ENSPCIG00000029309) #18	ENSPCIG00000035122 #19	ENSPCIG00000003136	FNDC3A (ENSPCIG00000003084) #20	ENSPCIG00000003125	MLNR (ENSPCIG00000003060) #21	CDADC1 (ENSPCIG00000002986) #22	CAB39L (ENSPCIG00000002962) #23	SETDB2 (ENSPCIG00000002912) #24	ENSPCIG00000002895 #25	RCBTB1 (ENSPCIG00000002866) #26	ARL11 (ENSPCIG00000002831) #27	EBPL (ENSPCIG00000002805) #28	KPNA3 (ENSPCIG00000002788) #29	SPRYD7 (ENSPCIG00000019440) #33	TRIM13 (ENSPCIG00000019431) #34	KCNRG (ENSPCIG00000019428) #35
Common wonbat	MODERN SPECIES	342	ENSVURG00010023498 #8	HTR2A (ENSVURG00010023492) #9	ENSVURG00010023489	SUCLA2 (ENSVURG00010023483) #11	NUDT15 (ENSVURG00010023481) #12	MED4 (ENSVURG00010023479) #13	ENSVURG00010023475	ITM2B (ENSVURG00010023473) #15	LPAR6 (ENSVURG00010023472) #17	RB1 (ENSVURG00010023466) #16	RCBTB2 (ENSVURG00010023456) #18	ENSVURG00010023449	ENSVURG00010023445	FNDC3A (ENSVURG00010023437) #20	MLNR (ENSVURG00010023433) #21	CDADC1 (ENSVURG00010023432) #22	CAB39L (ENSVURG00010023430) #23	ENSVURG00010023428 #24	ENSVURG00010023427	ENSVURG00010023425 #25	RCBTB1 (ENSVURG00010023423) #26	ARL11 (ENSVURG00010023422) #27	EBPL (ENSVURG00010023420) #28	KPNA3 (ENSVURG00010023417) #29
Platypus	MODERN SPECIES	12	CPB2 (ENSOANG00000015578)	LCP1 (ENSOANG00000015575)	RUBCNL (ENSOANG00000015572)	LRCH1 (ENSOANG00000015567) #7	ESD (ENSOANG00000015566) #8	SUCLA2 (ENSOANG00000015563) #11	NUDT15 (ENSOANG00000051200) #12	ITM2B (ENSOANG00000015558) #15	MED4 (ENSOANG00000045146) #13	LPAR6 (ENSOANG00000043938) #17	RB1 (ENSOANG00000015555) #16	RCBTB2 (ENSOANG00000015554) #18	CYSLTR2 (ENSOANG00000015552) #19	FNDC3A (ENSOANG00000015550) #20	MLNR (ENSOANG00000050133) #21	CDADC1 (ENSOANG00000015548) #22	CAB39L (ENSOANG00000022493) #23	SETDB2 (ENSOANG00000015546) #24	RCBTB1 (ENSOANG00000038043) #26	ENSOANG00000045202 #28	KPNA3 (ENSOANG00000015542) #29	SPRYD7 (ENSOANG00000043027) #33	TRIM13 (ENSOANG00000015539) #34	KCNRG (ENSOANG00000015538) #35	RNASEH2B (ENSOANG00000015537)	ENSOANG00000015535	FAM124A (ENSOANG00000015533)	INTS6 (ENSOANG00000015531)	WDFY2 (ENSOANG00000015529)	ENSOANG00000040154	CCDC70 (ENSOANG00000015527)
Sauria	ANCESTRAL SPECIES	2	ENSGT00940000160585	ENSGT00940000159528 #7	ENSGT01040000240539	ENSGT00390000011864 #8	ENSGT01050000244937.a.a #9	ENSGT00390000010170.a.b #11	ENSGT00390000003338 #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #15	ENSGT00950000183202.b #16	ENSGT01040000240444.A.a.a.a.a #17	ENSGT00940000158925 #18	ENSGT01100000263536.B.c.a #19	ENSGT00940000159319 #20	ENSGT01100000263484.C.a.l #21	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #24	ENSGT00950000182865.b.a.b.b.b.a #25	ENSGT00940000155814 #26	ENSGT00940000162731 #27	ENSGT00530000063715.b #28	ENSGT01050000244891.C.c.b #29	ENSGT00390000011048 #33	ENSGT00940000159715 #34	ENSGT00940000161898 #35	ENSGT00390000011737	ENSGT00390000011439	ENSGT00940000162114	ENSGT00590000083134.a.a	ENSGT00940000160941
Lepidosauria	ANCESTRAL SPECIES	90														ENSGT00940000159319 #20	ENSGT01100000263484.C.a.l #21	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #24	ENSGT00950000182865.b.a.b.b.b.a #25	ENSGT00940000155814 #26	ENSGT00940000162731 #27	ENSGT00530000063715.b #28	ENSGT01050000244891.C.c.b #29	ENSGT00390000011048 #33	ENSGT00940000159715 #34	ENSGT00940000161898 #35	ENSGT00390000011737	ENSGT00390000011439	ENSGT00940000162114	ENSGT00590000083134.a.a	ENSGT00940000160941
tuatara	MODERN SPECIES	1823														ENSSPUG00000007114 #20	MLNR (ENSSPUG00000007103) #21	CDADC1 (ENSSPUG00000007083) #22	CAB39L (ENSSPUG00000006967) #23	ENSSPUG00000006943 #24	ENSSPUG00000006894 #24	PHF11 (ENSSPUG00000006884) #25	RCBTB1 (ENSSPUG00000006868) #26	ARL11 (ENSSPUG00000006852) #27	EBPL (ENSSPUG00000006849) #28	KPNA3 (ENSSPUG00000006839) #29	SPRYD7 (ENSSPUG00000006829) #33	TRIM13 (ENSSPUG00000006825) #34	KCNRG (ENSSPUG00000006820) #35	DLEU7 (ENSSPUG00000006801)	ENSSPUG00000006745	ENSSPUG00000006724	SERPINE3 (ENSSPUG00000006691)
Archelosauria	ANCESTRAL SPECIES		ENSGT00940000160585	ENSGT00940000159528 #7	ENSGT01040000240539	ENSGT00390000011864 #8	ENSGT01050000244937.a.a #9	ENSGT00390000010170.a.b #11	ENSGT00390000003338 #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #15	ENSGT00950000183202.b #16	ENSGT01040000240444.A.a.a.a.a #17	ENSGT00940000158925 #18	ENSGT01100000263536.B.c.a #19	ENSGT00940000159319 #20	ENSGT01100000263484.C.a.l #21	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #24	ENSGT00950000182865.b.a.b.b.b.a #25	ENSGT00940000155814 #26	ENSGT00940000162731 #27	ENSGT00530000063715.b #28	ENSGT01050000244891.C.c.b #29	ENSGT00390000011048 #33	ENSGT00940000159715 #34	ENSGT00940000161898 #35	ENSGT00390000011737	ENSGT00390000011439	ENSGT00940000162114	ENSGT00590000083134.a.a	ENSGT00940000160941
Cryptodira	ANCESTRAL SPECIES		ENSGT00940000159528 #7	ENSGT01040000240539	ENSGT00390000011864 #8	ENSGT01050000244937.a.a #9	ENSGT00390000010170.a.b #11	ENSGT00390000003338 #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #15	ENSGT00950000183202.b #16	ENSGT01040000240444.A.a.a.a.a #17	ENSGT00940000158925 #18	ENSGT00990000203619.B	ENSGT01100000263536.B.c.a #19	ENSGT00940000159319 #20	ENSGT01100000263484.C.a.l #21	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #24	ENSGT00950000182865.b.a.b.b.b.a #25	ENSGT00940000155814 #26	ENSGT00940000162731 #27	ENSGT00530000063715.b #28	ENSGT01050000244891.C.c.b #29	ENSGT00390000011048 #33	ENSGT00940000159715 #34	ENSGT00940000161898 #35	ENSGT00390000011737	ENSGT00390000011439	ENSGT00940000162114	ENSGT00590000083134.a.a	ENSGT00940000160941
Chinese turtle	MODERN SPECIES	955														FNDC3A (ENSPSIG00000002179) #20	MLNR (ENSPSIG00000002189) #21	CDADC1 (ENSPSIG00000002192) #22	CAB39L (ENSPSIG00000002194) #23	SETDB2 (ENSPSIG00000002200) #24	PHF11 (ENSPSIG00000002205) #25	RCBTB1 (ENSPSIG00000002211) #26	ARL11 (ENSPSIG00000001265) #27	EBPL (ENSPSIG00000002215) #28	KPNA3 (ENSPSIG00000002217) #29	ENSPSIG00000001296	SPRYD7 (ENSPSIG00000002221) #33	TRIM13 (ENSPSIG00000001307) #34	KCNRG (ENSPSIG00000002223) #35	ENSPSIG00000002224
Testudinoidea	ANCESTRAL SPECIES	1	ENSGT00950000183097.a.a.b	ENSGT00940000160585	ENSGT00940000159528.a #7	ENSGT00390000011864 #8	ENSGT01050000244937.a.a.c #9	ENSGT00390000010170.a.b #11	ENSGT00390000003338 #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #15	ENSGT00950000183202.b #16	ENSGT01040000240444.A.a.a.a.a #17	ENSGT00940000158925 #18	ENSGT00990000203619.B	ENSGT00940000159319 #20	ENSGT01100000263484.C.a.l #21	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #24	ENSGT00950000182865.b.a.b.b.b.a #25	ENSGT00940000155814 #26	ENSGT00940000162731 #27	ENSGT00530000063715.b #28	ENSGT01050000244891.C.c.b #29	ENSGT00390000011048 #33	ENSGT00940000159715 #34	ENSGT00940000161898 #35	ENSGT00390000011737	ENSGT00390000011439	ENSGT00940000162114	ENSGT00590000083134.a.a	ENSGT00940000160941
Emydidae	ANCESTRAL SPECIES	19					ENSGT01050000244937.a.a.d #9	ENSGT00390000010170.a.b #11	ENSGT00390000003338 #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #15	ENSGT00950000183202.b #16	ENSGT01040000240444.A.a.a.a.a #17	ENSGT00940000158925 #18	ENSGT01100000263536.B.c.a #19	ENSGT00940000159319 #20	ENSGT01100000263484.C.a.l #21	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #24	ENSGT00950000182865.b.a.b.b.b.a #25	ENSGT00940000155814 #26	ENSGT00940000162731 #27	ENSGT00530000063715.b #28	ENSGT01050000244891.C.c.b #29	ENSGT00390000011048 #33	ENSGT00940000159715 #34	ENSGT00940000161898 #35	ENSGT00390000011737	ENSGT00390000011439	ENSGT00940000162114	ENSGT00590000083134.a.a	ENSGT00940000160941
painted turtle	DUPLICATION
painted turtle	MODERN SPECIES	764	ENSCPBG00000020310	ENSCPBG00000020311	HINT1 (ENSCPBG00000020313)	LYRM7 (ENSCPBG00000020316)	ENSCPBG00000020319	CDC42SE2 (ENSCPBG00000020323)	SPTLC1 (ENSCPBG00000020329)	ROR2 (ENSCPBG00000020338)	ENSCPBG00000020348	NFIL3 (ENSCPBG00000020350)	AUH (ENSCPBG00000020352)	BICD1 (ENSCPBG00000020360)	FGD4 (ENSCPBG00000020371)	DNM1L (ENSCPBG00000020381)	YARS2 (ENSCPBG00000020392)	ENSCPBG00000020395 #22
painted turtle	MODERN SPECIES		LCP1 (ENSCPBG00000008230)	RUBCNL (ENSCPBG00000008254)	LRCH1 (ENSCPBG00000008287) #7	ENSCPBG00000008337 #8	ENSCPBG00000008349 #9	SUCLA2 (ENSCPBG00000008358) #11	NUDT15 (ENSCPBG00000008367) #12	MED4 (ENSCPBG00000008373) #13	ITM2B (ENSCPBG00000008384) #15	RB1 (ENSCPBG00000008402) #16	LPAR6 (ENSCPBG00000008431) #17	RCBTB2 (ENSCPBG00000008438) #18	CYSLTR2 (ENSCPBG00000008453) #19	FNDC3A (ENSCPBG00000008461) #20	MLNR (ENSCPBG00000008496) #21	CDADC1 (ENSCPBG00000008499) #22	CAB39L (ENSCPBG00000008505) #23	SETDB2 (ENSCPBG00000008524) #24	PHF11 (ENSCPBG00000008536) #25	RCBTB1 (ENSCPBG00000008550) #26	ARL11 (ENSCPBG00000008579) #27	EBPL (ENSCPBG00000008583) #28	KPNA3 (ENSCPBG00000008596) #29	SPRYD7 (ENSCPBG00000008613) #33	TRIM13 (ENSCPBG00000008621) #34	KCNRG (ENSCPBG00000008627) #35	ENSCPBG00000008640	DLEU7 (ENSCPBG00000008663)	RNASEH2B (ENSCPBG00000008684)	ENSCPBG00000008715	FAM124A (ENSCPBG00000008848)
Three-toed box turtle	DUPLICATION
Three-toed box turtle	MODERN SPECIES	118	ENSTMTG00000004415	TMTC1 (ENSTMTG00000004248)	IPO8 (ENSTMTG00000004177)	ENSTMTG00000004154	ENSTMTG00000004128	SINHCAF (ENSTMTG00000004092)	DENND5B (ENSTMTG00000004004)	ENSTMTG00000003983	ENSTMTG00000003968	ENSTMTG00000003956	BICD1 (ENSTMTG00000003918)	ENSTMTG00000003899	FGD4 (ENSTMTG00000003532)	DNM1L (ENSTMTG00000003416)	YARS2 (ENSTMTG00000003380)	ENSTMTG00000003339 #22	PKP2 (ENSTMTG00000003317)	SYT10 (ENSTMTG00000003286)	SLC13A4 (ENSTMTG00000003255)	FAM180A (ENSTMTG00000021768)	MTPN (ENSTMTG00000021764)	CHRM2 (ENSTMTG00000021762)	PTN (ENSTMTG00000021755)	DGKI (ENSTMTG00000021578)	CREB3L2 (ENSTMTG00000021553)	SSBP1 (ENSTMTG00000021544)	WEE2 (ENSTMTG00000021535)	DENND11 (ENSTMTG00000021527)	AGK (ENSTMTG00000021483)	TMEM178B (ENSTMTG00000021466)	MRPS33 (ENSTMTG00000021462)
Three-toed box turtle	MODERN SPECIES								ENSTMTG00000000016	NUDT15 (ENSTMTG00000000015) #12	ITM2B (ENSTMTG00000000014) #15	LPAR6 (ENSTMTG00000000012) #17	RB1 (ENSTMTG00000000011) #16	RCBTB2 (ENSTMTG00000000010) #18	ENSTMTG00000000009	FNDC3A (ENSTMTG00000000008) #20	MLNR (ENSTMTG00000000007) #21	CDADC1 (ENSTMTG00000000006) #22	CAB39L (ENSTMTG00000000005) #23	ENSTMTG00000000004 #24	PHF11 (ENSTMTG00000000003) #25	ENSTMTG00000000002 #26
Testudinidae	ANCESTRAL SPECIES		ENSGT00950000183097.a.a.b	ENSGT00940000160585	ENSGT00940000159528.a #7	ENSGT00390000011864 #8	ENSGT01050000244937.a.a.c #9	ENSGT00390000010170.a.b #11	ENSGT00390000003338 #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #15	ENSGT00950000183202.b #16	ENSGT01040000240444.A.a.a.a.a #17	ENSGT00940000158925 #18	ENSGT00990000203619.B	ENSGT00940000159319 #20	ENSGT01100000263484.C.a.l #21	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #24	ENSGT00950000182865.b.a.b.b.b.a #25	ENSGT00940000155814 #26	ENSGT00940000162731 #27	ENSGT00530000063715.b #28	ENSGT01050000244891.C.c.b #29	ENSGT00390000011048 #33	ENSGT00940000159715 #34	ENSGT00940000161898 #35	ENSGT00390000011737	ENSGT00390000011439	ENSGT00940000162114	ENSGT00590000083134.a.a	ENSGT00940000160941
Abingdon island giant tortoise	MODERN SPECIES	2507																CDADC1 (ENSCABG00000001490) #22
Goode s thornscrub tortoise	MODERN SPECIES		RUBCNL (ENSGEVG00005006850)	LRCH1 (ENSGEVG00005006747) #7	ESD (ENSGEVG00005006649) #8	HTR2A (ENSGEVG00005006629) #9	ENSGEVG00005006611	SUCLA2 (ENSGEVG00005006596) #11	NUDT15 (ENSGEVG00005006585) #12	MED4 (ENSGEVG00005006571) #13	ITM2B (ENSGEVG00005006545) #15	LPAR6 (ENSGEVG00005006519) #17	RB1 (ENSGEVG00005006482) #16	RCBTB2 (ENSGEVG00005006426) #18	ENSGEVG00005006386	FNDC3A (ENSGEVG00005006289) #20	MLNR (ENSGEVG00005006112) #21	CDADC1 (ENSGEVG00005006081) #22	CAB39L (ENSGEVG00005006065) #23	SETDB2 (ENSGEVG00005005991) #24	PHF11 (ENSGEVG00005005934) #25	RCBTB1 (ENSGEVG00005005905) #26	ARL11 (ENSGEVG00005005885) #27	EBPL (ENSGEVG00005005869) #28	KPNA3 (ENSGEVG00005005843) #29	SPRYD7 (ENSGEVG00005005821) #33	TRIM13 (ENSGEVG00005005808) #34	KCNRG (ENSGEVG00005005794) #35	DLEU7 (ENSGEVG00005005763)	RNASEH2B (ENSGEVG00005005742)	ENSGEVG00005005488	FAM124A (ENSGEVG00005005404)	SERPINE3 (ENSGEVG00005005365)
Archosauria	ANCESTRAL SPECIES	2	ENSGT00940000173214	ENSGT00940000160585	ENSGT00940000159528 #7	ENSGT00390000011864 #8	ENSGT01050000244937.a.a #9	ENSGT00390000010170.a.b #11	ENSGT00390000003338 #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #15	ENSGT00950000183202.b #16	ENSGT01040000240444.A.a.a.a.a #17	ENSGT00940000158925 #18	ENSGT01100000263536.B.c.a #19	ENSGT00940000159319 #20	ENSGT01100000263484.C.a.l #21	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #24	ENSGT00950000182865.b.a.b.b.b.a #25	ENSGT00940000155814 #26	ENSGT00940000162731 #27	ENSGT01050000244891.C.c.b #29	ENSGT00390000011048 #33	ENSGT00940000159715 #34	ENSGT00940000161898 #35	ENSGT00390000011737	ENSGT00390000011439	ENSGT00940000162114	ENSGT00590000083134.a.a	ENSGT00940000160941	ENSGT00390000016655.a.a.b
Aves	ANCESTRAL SPECIES		ENSGT00940000173214	ENSGT00940000160585	ENSGT00940000159528 #7	ENSGT00390000011864 #8	ENSGT01050000244937.a.a #9	ENSGT00390000010170.a.b #11	ENSGT00390000003338 #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #15	ENSGT00950000183202.b #16	ENSGT01040000240444.A.a.a.a.a #17	ENSGT00940000158925 #18	ENSGT01100000263536.B.c.a #19	ENSGT00940000159319 #20	ENSGT01100000263484.C.a.l #21	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #24	ENSGT00950000182865.b.a.b.b.b.a #25	ENSGT00940000155814 #26	ENSGT00940000162731 #27	ENSGT01050000244891.C.c.b #29	ENSGT00390000011048 #33	ENSGT00940000159715 #34	ENSGT00940000161898 #35	ENSGT00390000011737	ENSGT00390000011439	ENSGT00940000162114	ENSGT00590000083134.a.a	ENSGT00940000160941	ENSGT00390000016655.a.a.b
Neognathae	ANCESTRAL SPECIES	1	ENSGT00940000160585	ENSGT00940000159528 #7	ENSGT00390000011864 #8	ENSGT01050000244937.a.a #9	ENSGT00990000211105	ENSGT00390000010170.a.b #11	ENSGT00390000003338 #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #15	ENSGT00950000183202.b #16	ENSGT01040000240444.A.a.a.a.a #17	ENSGT00940000158925 #18	ENSGT01100000263536.B.c.a #19	ENSGT00940000159319 #20	ENSGT01100000263484.C.a.l #21	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #24	ENSGT00950000182865.b.a.b.b.b.a #25	ENSGT00940000155814 #26	ENSGT00940000162731 #27	ENSGT01050000244891.C.c.b #29	ENSGT00390000011048 #33	ENSGT00940000159715 #34	ENSGT00940000161898 #35	ENSGT00390000011737	ENSGT00390000011439	ENSGT00590000083134.a.a	ENSGT00940000160941	ENSGT00390000016655.a.a.b	ENSGT00940000158527
Neognathae_b	ANCESTRAL SPECIES		ENSGT00940000160585	ENSGT00940000159528.d #7	ENSGT00390000011864 #8	ENSGT01050000244937.a.a #9	ENSGT00990000211105	ENSGT00390000010170.a.b #11	ENSGT00390000003338 #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #15	ENSGT00950000183202.b #16	ENSGT01040000240444.A.a.a.a.a #17	ENSGT00940000158925 #18	ENSGT01100000263536.B.c.a #19	ENSGT00940000159319 #20	ENSGT01100000263484.C.a.l #21	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #24	ENSGT00950000182865.b.a.b.b.b.a #25	ENSGT00940000155814 #26	ENSGT00940000162731 #27	ENSGT01050000244891.C.c.b #29	ENSGT00390000011048 #33	ENSGT00940000159715 #34	ENSGT00940000161898 #35	ENSGT00390000011439	ENSGT00590000083134.a.a	ENSGT00940000160941	ENSGT00390000016655.a.a.b	ENSGT00940000158527	ENSGT00940000163978
Neognathae_c	ANCESTRAL SPECIES	11	ENSGT00950000183097.a.a.b	ENSGT00940000160585	ENSGT00940000159528.d #7	ENSGT00390000011864 #8	ENSGT01050000244937.a.a #9	ENSGT00990000211105	ENSGT00390000010170.a.b #11	ENSGT00390000003338 #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #15	ENSGT00950000183202.b #16	ENSGT01040000240444.A.a.a.a.a #17	ENSGT00940000158925 #18	ENSGT01100000263536.B.c.a #19	ENSGT00940000159319 #20	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #24	ENSGT00950000182865.b.a.b.b.b.a #25	ENSGT00940000155814 #26	ENSGT00940000162731 #27	ENSGT01050000244891.C.c.b #29	ENSGT00390000011048 #33	ENSGT00940000159715 #34	ENSGT00940000161898 #35	ENSGT00390000011439	ENSGT00590000083134.a.a	ENSGT00940000160941	ENSGT00390000016655.a.a.b	ENSGT00940000158527	ENSGT00940000163978
Golden eagle	MODERN SPECIES	5	LCP1 (ENSACCG00020011643)	RUBCNL (ENSACCG00020011678)	LRCH1 (ENSACCG00020011771) #7	ESD (ENSACCG00020011833) #8	HTR2A (ENSACCG00020011855) #9	ENSACCG00020011887	SUCLA2 (ENSACCG00020011934) #11	NUDT15 (ENSACCG00020011958) #12	MED4 (ENSACCG00020011985) #13	ITM2B (ENSACCG00020012021) #15	RB1 (ENSACCG00020012131) #16	LPAR6 (ENSACCG00020012201) #17	RCBTB2 (ENSACCG00020012227) #18	CYSLTR2 (ENSACCG00020012257) #19	FNDC3A (ENSACCG00020012324) #20	CDADC1 (ENSACCG00020012412) #22	CAB39L (ENSACCG00020012436) #23	SETDB2 (ENSACCG00020012483) #24	PHF11 (ENSACCG00020012535) #25	RCBTB1 (ENSACCG00020012556) #26	ARL11 (ENSACCG00020012574) #27	KPNA3 (ENSACCG00020012597) #29	SPRYD7 (ENSACCG00020012640) #33	TRIM13 (ENSACCG00020012649) #34	KCNRG (ENSACCG00020012660) #35	RNASEH2B (ENSACCG00020012697)	FAM124A (ENSACCG00020012738)	SERPINE3 (ENSACCG00020012759)	INTS6 (ENSACCG00020012799)	WDFY2 (ENSACCG00020012838)	ENSACCG00020012862
Kakapo	MODERN SPECIES	11	CPB2 (ENSSHBG00005008274)	LCP1 (ENSSHBG00005008297)	RUBCNL (ENSSHBG00005008318)	LRCH1 (ENSSHBG00005008351) #7	ESD (ENSSHBG00005008373) #8	HTR2A (ENSSHBG00005008380) #9	SUCLA2 (ENSSHBG00005008387) #11	NUDT15 (ENSSHBG00005008396) #12	MED4 (ENSSHBG00005008402) #13	ITM2B (ENSSHBG00005008421) #15	RB1 (ENSSHBG00005008428) #16	LPAR6 (ENSSHBG00005008437) #17	RCBTB2 (ENSSHBG00005000029) #18	CYSLTR2 (ENSSHBG00005000035) #19	FNDC3A (ENSSHBG00005000045) #20	CDADC1 (ENSSHBG00005001474) #22	CAB39L (ENSSHBG00005001515) #23	SETDB2 (ENSSHBG00005001539) #24	PHF11 (ENSSHBG00005001586) #25	RCBTB1 (ENSSHBG00005001601) #26	ARL11 (ENSSHBG00005001633) #27	KPNA3 (ENSSHBG00005001660) #29	SPRYD7 (ENSSHBG00005001708) #33	TRIM13 (ENSSHBG00005001751) #34	KCNRG (ENSSHBG00005001767) #35	ENSSHBG00005001793	RNASEH2B (ENSSHBG00005001816)	FAM124A (ENSSHBG00005001834)	SERPINE3 (ENSSHBG00005001858)	INTS6 (ENSSHBG00005001911)	WDFY2 (ENSSHBG00005001959)
Passeriformes	ANCESTRAL SPECIES	1	ENSGT00950000183097.a.a.b	ENSGT00940000160585	ENSGT00940000159528.d #7	ENSGT00390000011864 #8	ENSGT01050000244937.a.a #9	ENSGT00390000010170.a.b #11	ENSGT00390000003338 #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #15	ENSGT00950000183202.b #16	ENSGT01040000240444.A.a.a.a.a #17	ENSGT00940000158925 #18	ENSGT01100000263536.B.c.a #19	ENSGT00940000159319 #20	ENSGT01100000263484.C.a.l #21	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #24	ENSGT00950000182865.b.a.b.b.b.a #25	ENSGT00940000155814 #26	ENSGT00940000162731 #27	ENSGT01050000244891.C.c.b #29	ENSGT00390000011048 #33	ENSGT00940000159715 #34	ENSGT00940000161898 #35	ENSGT00390000011439	ENSGT00590000083134.a.a	ENSGT00940000160941	ENSGT00390000016655.a.a.b	ENSGT00940000158527	ENSGT00940000163978
Passeriformes_d	ANCESTRAL SPECIES	1	ENSGT00950000183097.a.a.b	ENSGT00940000160585	ENSGT00940000159528.d #7	ENSGT00390000011864 #8	ENSGT01050000244937.a.a #9	ENSGT00390000010170.a.b #11	ENSGT00390000003338 #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #15	ENSGT00950000183202.b #16	ENSGT01040000240444.A.a.a.a.a #17	ENSGT00940000158925 #18	ENSGT01100000263536.B.c.a #19	ENSGT00940000159319 #20	ENSGT01100000263484.C.a.l #21	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #24	ENSGT00950000182865.b.a.b.b.b.a #25	ENSGT00940000155814 #26	ENSGT00940000162731 #27	ENSGT01050000244891.C.c.b #29	ENSGT00390000011048 #33	ENSGT00940000159715 #34	ENSGT00940000161898 #35	ENSGT00390000011439	ENSGT00590000083134.a.a	ENSGT00940000160941	ENSGT00390000016655.a.a.b	ENSGT00940000158527	ENSGT00940000163978
Passeriformes_g	ANCESTRAL SPECIES	2	ENSGT00950000183097.a.a.b	ENSGT00940000160585	ENSGT00940000159528.d #7	ENSGT00390000011864 #8	ENSGT01050000244937.a.a #9	ENSGT00390000010170.a.b #11	ENSGT00390000003338 #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #15	ENSGT00950000183202.b #16	ENSGT01040000240444.A.a.a.a.a #17	ENSGT00940000158925 #18	ENSGT01100000263536.B.c.a #19	ENSGT00940000159319 #20	ENSGT01100000263484.C.a.l #21	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #24	ENSGT00950000182865.b.a.b.b.b.a #25	ENSGT00940000155814 #26	ENSGT00940000162731 #27	ENSGT01050000244891.C.c.b #29	ENSGT00390000011048 #33	ENSGT00940000159715 #34	ENSGT00940000161898 #35	ENSGT00390000011439	ENSGT00590000083134.a.a	ENSGT00940000160941	ENSGT00390000016655.a.a.b	ENSGT00940000158527	ENSGT00940000163978
Passeroidea	ANCESTRAL SPECIES	5	ENSGT00950000183097.a.a.b	ENSGT00940000160585	ENSGT00940000159528.d #7	ENSGT00390000011864 #8	ENSGT01050000244937.a.a #9	ENSGT00390000010170.a.b #11	ENSGT00390000003338 #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #15	ENSGT00950000183202.b #16	ENSGT01040000240444.A.a.a.a.a #17	ENSGT00940000158925 #18	ENSGT01100000263536.B.c.a #19	ENSGT00940000159319 #20	ENSGT01100000263484.C.a.l #21	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #24	ENSGT00950000182865.b.a.b.b.b.a #25	ENSGT00940000155814 #26	ENSGT00940000162731 #27	ENSGT01050000244891.C.c.b #29	ENSGT00390000011048 #33	ENSGT00940000159715 #34	ENSGT00940000161898 #35	ENSGT00390000011439	ENSGT00590000083134.a.a	ENSGT00940000160941	ENSGT00390000016655.a.a.b	ENSGT00940000158527	ENSGT00940000163978
Common canary	MODERN SPECIES	4	RUBCNL (ENSSCAG00000013235)	LRCH1 (ENSSCAG00000013210) #7	ESD (ENSSCAG00000013199) #8	HTR2A (ENSSCAG00000013193) #9	SUCLA2 (ENSSCAG00000013172) #11	NUDT15 (ENSSCAG00000013166) #12	MED4 (ENSSCAG00000013164) #13	ITM2B (ENSSCAG00000013161) #15	ENSSCAG00000013159	LPAR6 (ENSSCAG00000013157) #17	RB1 (ENSSCAG00000013148) #16	RCBTB2 (ENSSCAG00000013140) #18	CYSLTR2 (ENSSCAG00000013136) #19	FNDC3A (ENSSCAG00000013116) #20	MLNR (ENSSCAG00000013112) #21	CDADC1 (ENSSCAG00000013110) #22	CAB39L (ENSSCAG00000013101) #23	SETDB2 (ENSSCAG00000013094) #24	PHF11 (ENSSCAG00000013090) #25	ARL11 (ENSSCAG00000013085) #27	RCBTB1 (ENSSCAG00000013081) #26	KPNA3 (ENSSCAG00000013069) #29	SPRYD7 (ENSSCAG00000013043) #33	TRIM13 (ENSSCAG00000013034) #34	KCNRG (ENSSCAG00000013032) #35	RNASEH2B (ENSSCAG00000012998)	FAM124A (ENSSCAG00000012992)	SERPINE3 (ENSSCAG00000012981)	INTS6 (ENSSCAG00000012974)	WDFY2 (ENSSCAG00000012968)	ENSSCAG00000012959
Zebra finch	MODERN SPECIES		LCP1 (ENSTGUG00000012284)	RUBCNL (ENSTGUG00000012281)	LRCH1 (ENSTGUG00000012267) #7	ESD (ENSTGUG00000012256) #8	HTR2A (ENSTGUG00000012255) #9	SUCLA2 (ENSTGUG00000012239) #11	NUDT15 (ENSTGUG00000012236) #12	MED4 (ENSTGUG00000022889) #13	ITM2B (ENSTGUG00000012223) #15	RB1 (ENSTGUG00000012205) #16	LPAR6 (ENSTGUG00000012222) #17	RCBTB2 (ENSTGUG00000012201) #18	CYSLTR2 (ENSTGUG00000024279) #19	FNDC3A (ENSTGUG00000012174) #20	MLNR (ENSTGUG00000012172) #21	CDADC1 (ENSTGUG00000012166) #22	CAB39L (ENSTGUG00000012160) #23	SETDB2 (ENSTGUG00000012159) #24	PHF11 (ENSTGUG00000012156) #25	RCBTB1 (ENSTGUG00000012146) #26	ARL11 (ENSTGUG00000020855) #27	KPNA3 (ENSTGUG00000012126) #29	SPRYD7 (ENSTGUG00000019704) #33	TRIM13 (ENSTGUG00000012115) #34	RNASEH2B (ENSTGUG00000012104)	FAM124A (ENSTGUG00000023086)	SERPINE3 (ENSTGUG00000012096)	INTS6 (ENSTGUG00000012084)	WDFY2 (ENSTGUG00000012075)	ENSTGUG00000025030	ENSTGUG00000019306
Medium ground finch	MODERN SPECIES	25	LCP1 (ENSGFOG00000011957)	RUBCNL (ENSGFOG00000011968)	LRCH1 (ENSGFOG00000011980) #7	ESD (ENSGFOG00000012013) #8	HTR2A (ENSGFOG00000012020) #9	SUCLA2 (ENSGFOG00000012031) #11	NUDT15 (ENSGFOG00000012066) #12	MED4 (ENSGFOG00000012071) #13	ITM2B (ENSGFOG00000012074) #15	RB1 (ENSGFOG00000012079) #16	LPAR6 (ENSGFOG00000012090) #17	RCBTB2 (ENSGFOG00000012093) #18	CYSLTR2 (ENSGFOG00000012100) #19	FNDC3A (ENSGFOG00000012105) #20	MLNR (ENSGFOG00000012122) #21	CDADC1 (ENSGFOG00000012132) #22	CAB39L (ENSGFOG00000012135) #23	SETDB2 (ENSGFOG00000012144) #24	PHF11 (ENSGFOG00000012155) #25	RCBTB1 (ENSGFOG00000012164) #26	ARL11 (ENSGFOG00000012172) #27	KPNA3 (ENSGFOG00000012187) #29	SPRYD7 (ENSGFOG00000012225) #33	TRIM13 (ENSGFOG00000005836) #34	KCNRG (ENSGFOG00000005952) #35	RNASEH2B (ENSGFOG00000005963)	FAM124A (ENSGFOG00000005986)	SERPINE3 (ENSGFOG00000005999)	INTS6 (ENSGFOG00000006012)	WDFY2 (ENSGFOG00000006027)	ENSGFOG00000006034
Flycatcher	MODERN SPECIES		LCP1 (ENSFALG00000008208)	RUBCNL (ENSFALG00000008218)	LRCH1 (ENSFALG00000008234) #7	ESD (ENSFALG00000025468) #8	HTR2A (ENSFALG00000008251) #9	SUCLA2 (ENSFALG00000008254) #11	NUDT15 (ENSFALG00000008258) #12	MED4 (ENSFALG00000008261) #13	ITM2B (ENSFALG00000028667) #15	RB1 (ENSFALG00000008306) #16	LPAR6 (ENSFALG00000029001) #17	RCBTB2 (ENSFALG00000008347) #18	CYSLTR2 (ENSFALG00000014456) #19	FNDC3A (ENSFALG00000008353) #20	MLNR (ENSFALG00000008366) #21	CDADC1 (ENSFALG00000008368) #22	CAB39L (ENSFALG00000008370) #23	SETDB2 (ENSFALG00000008379) #24	PHF11 (ENSFALG00000008388) #25	RCBTB1 (ENSFALG00000008397) #26	ARL11 (ENSFALG00000014468) #27	KPNA3 (ENSFALG00000008405) #29	SPRYD7 (ENSFALG00000008415) #33	KCNRG (ENSFALG00000027268) #35	RNASEH2B (ENSFALG00000008435)	FAM124A (ENSFALG00000008449)	SERPINE3 (ENSFALG00000008456)	INTS6 (ENSFALG00000008463)	WDFY2 (ENSFALG00000008473)	ENSFALG00000008490	ATP7B (ENSFALG00000008513)
Great tit	MODERN SPECIES		LCP1 (ENSPMJG00000014910)	RUBCNL (ENSPMJG00000014911)	LRCH1 (ENSPMJG00000014912) #7	ESD (ENSPMJG00000014913) #8	HTR2A (ENSPMJG00000014914) #9	SUCLA2 (ENSPMJG00000014916) #11	NUDT15 (ENSPMJG00000014917) #12	MED4 (ENSPMJG00000014918) #13	ITM2B (ENSPMJG00000014920) #15	RB1 (ENSPMJG00000014921) #16	LPAR6 (ENSPMJG00000014922) #17	RCBTB2 (ENSPMJG00000014923) #18	CYSLTR2 (ENSPMJG00000014925) #19	FNDC3A (ENSPMJG00000014926) #20	MLNR (ENSPMJG00000014927) #21	CDADC1 (ENSPMJG00000014928) #22	CAB39L (ENSPMJG00000014929) #23	SETDB2 (ENSPMJG00000014930) #24	PHF11 (ENSPMJG00000014931) #25	RCBTB1 (ENSPMJG00000014932) #26	ARL11 (ENSPMJG00000014934) #27	KPNA3 (ENSPMJG00000014935) #29	SPRYD7 (ENSPMJG00000014936) #33	TRIM13 (ENSPMJG00000014937) #34	KCNRG (ENSPMJG00000014938) #35	RNASEH2B (ENSPMJG00000014950)	FAM124A (ENSPMJG00000014951)	SERPINE3 (ENSPMJG00000014953)	INTS6 (ENSPMJG00000014954)	ENSPMJG00000014957	WDFY2 (ENSPMJG00000014958)
Galloanserae	ANCESTRAL SPECIES	1	ENSGT00940000160585	ENSGT00940000159528 #7	ENSGT00390000011864 #8	ENSGT01050000244937.a.a #9	ENSGT00990000211105	ENSGT00390000010170.a.b #11	ENSGT00390000003338 #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #15	ENSGT00950000183202.b #16	ENSGT01040000240444.A.a.a.a.a #17	ENSGT00940000158925 #18	ENSGT01100000263536.B.c.a #19	ENSGT00940000159319 #20	ENSGT01100000263484.C.a.l #21	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #24	ENSGT00950000182865.b.a.b.b.b.a #25	ENSGT00940000155814 #26	ENSGT00940000162731 #27	ENSGT01050000244891.C.c.b #29	ENSGT00390000011048 #33	ENSGT00940000159715 #34	ENSGT00940000161898 #35	ENSGT00390000011737	ENSGT00390000011439	ENSGT00590000083134.a.a	ENSGT00940000160941	ENSGT00390000016655.a.a.b	ENSGT00940000158527
Anatidae	ANCESTRAL SPECIES	16	ENSGT00940000160585	ENSGT00940000159528 #7	ENSGT00390000011864 #8	ENSGT01050000244937.a.a #9	ENSGT00990000211105	ENSGT00390000010170.a.b #11	ENSGT00390000003338 #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #15	ENSGT01040000240444.A.a.a.a.a #17	ENSGT00950000183202.b #16	ENSGT00940000158925 #18	ENSGT01100000263536.B.c.a #19	ENSGT00940000159319 #20	ENSGT01100000263484.C.a.l #21	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #24	ENSGT00950000182865.b.a.b.b.b.a #25	ENSGT00940000155814 #26	ENSGT00940000162731 #27	ENSGT01050000244891.C.c.b #29	ENSGT00390000011048 #33	ENSGT00940000159715 #34	ENSGT00940000161898 #35	ENSGT00390000011737	ENSGT00390000011439	ENSGT00590000083134.a.a	ENSGT00940000160941	ENSGT00390000016655.a.a.b	ENSGT00940000158527
Pink-footed goose	MODERN SPECIES	88	LCP1 (ENSABRG00000006152)	RUBCNL (ENSABRG00000006110)	LRCH1 (ENSABRG00000006051) #7	ESD (ENSABRG00000006025) #8	HTR2A (ENSABRG00000006015) #9	SUCLA2 (ENSABRG00000005994) #11	NUDT15 (ENSABRG00000005976) #12	MED4 (ENSABRG00000005968) #13	ITM2B (ENSABRG00000005957) #15	LPAR6 (ENSABRG00000005948) #17	RB1 (ENSABRG00000005918) #16	RCBTB2 (ENSABRG00000005909) #18	CYSLTR2 (ENSABRG00000005903) #19	FNDC3A (ENSABRG00000005875) #20	MLNR (ENSABRG00000005864) #21	CDADC1 (ENSABRG00000005856) #22	CAB39L (ENSABRG00000005841) #23	SETDB2 (ENSABRG00000005808) #24	PHF11 (ENSABRG00000005790) #25	RCBTB1 (ENSABRG00000005768) #26	ARL11 (ENSABRG00000005745) #27	KPNA3 (ENSABRG00000005728) #29	SPRYD7 (ENSABRG00000005725) #33	TRIM13 (ENSABRG00000005719) #34	KCNRG (ENSABRG00000005718) #35	DLEU7 (ENSABRG00000005671)	RNASEH2B (ENSABRG00000005646)	FAM124A (ENSABRG00000005638)	SERPINE3 (ENSABRG00000005632)	INTS6 (ENSABRG00000005622)	WDFY2 (ENSABRG00000005602)
Duck	MODERN SPECIES		LRCH1 (ENSAPLG00000014780) #7	ESD (ENSAPLG00000014654) #8	HTR2A (ENSAPLG00000011672) #9	ENSAPLG00000023867	SUCLA2 (ENSAPLG00000008417) #11	NUDT15 (ENSAPLG00000021981) #12	MED4 (ENSAPLG00000008395) #13	ITM2B (ENSAPLG00000008210) #15	LPAR6 (ENSAPLG00000000875) #17	RB1 (ENSAPLG00000007734) #16	RCBTB2 (ENSAPLG00000007415) #18	CYSLTR2 (ENSAPLG00000001160) #19	ENSAPLG00000029898	FNDC3A (ENSAPLG00000009605) #20	MLNR (ENSAPLG00000024039) #21	CDADC1 (ENSAPLG00000009321) #22	CAB39L (ENSAPLG00000009191) #23	SETDB2 (ENSAPLG00000009061) #24	PHF11 (ENSAPLG00000008888) #25	RCBTB1 (ENSAPLG00000008303) #26	ARL11 (ENSAPLG00000008269) #27	KPNA3 (ENSAPLG00000007820) #29	SPRYD7 (ENSAPLG00000007617) #33	TRIM13 (ENSAPLG00000001137) #34	KCNRG (ENSAPLG00000025822) #35	DLEU7 (ENSAPLG00000008954)	RNASEH2B (ENSAPLG00000008955)	SERPINE3 (ENSAPLG00000006531)	INTS6 (ENSAPLG00000007010)	WDFY2 (ENSAPLG00000007335)	ENSAPLG00000007313
Phasianidae	ANCESTRAL SPECIES		ENSGT00940000173214	ENSGT00940000160585	ENSGT00940000159528 #7	ENSGT00390000011864 #8	ENSGT01050000244937.a.a #9	ENSGT00390000010170.a.b #11	ENSGT00390000003338 #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #15	ENSGT00950000183202.b #16	ENSGT01040000240444.A.a.a.a.a #17	ENSGT00940000158925 #18	ENSGT01100000263536.B.c.a #19	ENSGT00940000159319 #20	ENSGT01100000263484.C.a.l #21	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #24	ENSGT00950000182865.b.a.b.b.b.a #25	ENSGT00940000155814 #26	ENSGT00940000162731 #27	ENSGT01050000244891.C.c.b #29	ENSGT00390000011048 #33	ENSGT00940000159715 #34	ENSGT00940000161898 #35	ENSGT00390000011737	ENSGT00390000011439	ENSGT00590000083134.a.a	ENSGT00940000160941	ENSGT00390000016655.a.a.b	ENSGT00940000158527
Phasianidae_b	ANCESTRAL SPECIES		ENSGT00940000173288	ENSGT00940000160585	ENSGT00940000159528 #7	ENSGT00390000011864 #8	ENSGT01050000244937.a.a #9	ENSGT00390000010170.a.b #11	ENSGT00390000003338 #12	ENSGT00390000012063 #13	ENSGT00950000183115.b.a #15	ENSGT00950000183202.b #16	ENSGT01040000240444.A.a.a.a.a #17	ENSGT00940000158925 #18	ENSGT01100000263536.B.c.a #19	ENSGT00940000159319 #20	ENSGT01100000263484.C.a.l #21	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #24	ENSGT00950000182865.b.a.b.b.b.a #25	ENSGT00940000155814 #26	ENSGT00940000162731 #27	ENSGT01050000244891.C.c.b #29	ENSGT00390000011048 #33	ENSGT00940000159715 #34	ENSGT00940000161898 #35	ENSGT00390000011737	ENSGT00390000011439	ENSGT00590000083134.a.a	ENSGT00940000160941	ENSGT00390000016655.a.a.b	ENSGT00940000158527
Turkey	MODERN SPECIES		SERPINE3 (ENSMGAG00000015030)	FAM124A (ENSMGAG00000015026)	RNASEH2B (ENSMGAG00000015025)	DLEU7 (ENSMGAG00000004757)	ENSMGAG00000015580 #34	ENSMGAG00000015022 #35	SPRYD7 (ENSMGAG00000017519) #33	ENSMGAG00000015020 #29	SETDB2 (ENSMGAG00000015017) #24	ENSMGAG00000015018 #25	RCBTB1 (ENSMGAG00000015019) #26	ARL11 (ENSMGAG00000017962) #27	ENSMGAG00000017975	ENSMGAG00000018802 #23	ENSMGAG00000015016 #23	ENSMGAG00000015014 #22	ENSMGAG00000015012 #21	ENSMGAG00000015011 #20	ENSMGAG00000015569 #19	ENSMGAG00000020468 #16	RCBTB2 (ENSMGAG00000015010) #18	ENSMGAG00000015008 #16	ENSMGAG00000015009 #17	ENSMGAG00000021179	ITM2B (ENSMGAG00000015007) #15	ENSMGAG00000021154 #12	ENSMGAG00000015006 #13	SUCLA2 (ENSMGAG00000015004) #11	ENSMGAG00000018600 #9	ENSMGAG00000019843	ENSMGAG00000015002 #8
Chicken	MODERN SPECIES		ENSGALG00010003809	RUBCNL (ENSGALG00010003821)	LRCH1 (ENSGALG00010003843) #7	ESD (ENSGALG00010003848) #8	HTR2A (ENSGALG00010004769) #9	SUCLA2 (ENSGALG00010003858) #11	NUDT15 (ENSGALG00010003861) #12	MED4 (ENSGALG00010003870) #13	ITM2B (ENSGALG00010003889) #15	RB1 (ENSGALG00010003900) #16	LPAR6 (ENSGALG00010003920) #17	RCBTB2 (ENSGALG00010003929) #18	CYSLTR2 (ENSGALG00010003958) #19	FNDC3A (ENSGALG00010003986) #20	MLNR (ENSGALG00010003995) #21	CDADC1 (ENSGALG00010004002) #22	CAB39L (ENSGALG00010004043) #23	SETDB2 (ENSGALG00010004049) #24	PHF11 (ENSGALG00010004083) #25	ENSGALG00010004781 #26	ENSGALG00010004097 #26	ARL11 (ENSGALG00010004070) #27	KPNA3 (ENSGALG00010004141) #29	SPRYD7 (ENSGALG00010004147) #33	TRIM13 (ENSGALG00010002812) #34	DLEU7 (ENSGALG00010002820)	RNASEH2B (ENSGALG00010002864)	FAM124A (ENSGALG00010002888)	SERPINE3 (ENSGALG00010002897)	INTS6 (ENSGALG00010002925)	WDFY2 (ENSGALG00010002953)
Japanese quail	MODERN SPECIES		RUBCNL (ENSCJPG00005019761)	LRCH1 (ENSCJPG00005019762) #7	ESD (ENSCJPG00005019763) #8	HTR2A (ENSCJPG00005019764) #9	SUCLA2 (ENSCJPG00005019770) #11	NUDT15 (ENSCJPG00005019771) #12	ENSCJPG00005019772	MED4 (ENSCJPG00005019773) #13	ITM2B (ENSCJPG00005019774) #15	RB1 (ENSCJPG00005019775) #16	LPAR6 (ENSCJPG00005019776) #17	RCBTB2 (ENSCJPG00005019778) #18	CYSLTR2 (ENSCJPG00005019781) #19	FNDC3A (ENSCJPG00005019783) #20	MLNR (ENSCJPG00005019784) #21	CDADC1 (ENSCJPG00005019786) #22	CAB39L (ENSCJPG00005019787) #23	SETDB2 (ENSCJPG00005019788) #24	PHF11 (ENSCJPG00005019789) #25	RCBTB1 (ENSCJPG00005019790) #26	ARL11 (ENSCJPG00005019791) #27	KPNA3 (ENSCJPG00005019792) #29	SPRYD7 (ENSCJPG00005019793) #33	TRIM13 (ENSCJPG00005019794) #34	KCNRG (ENSCJPG00005019795) #35	DLEU7 (ENSCJPG00005019801)	RNASEH2B (ENSCJPG00005019803)	FAM124A (ENSCJPG00005019805)	SERPINE3 (ENSCJPG00005019806)	INTS6 (ENSCJPG00005019807)	WDFY2 (ENSCJPG00005019808)
African ostrich	MODERN SPECIES	755				LRCH1 (ENSSCUG00000010473) #7	ESD (ENSSCUG00000010471) #8	HTR2A (ENSSCUG00000010470) #9	SUCLA2 (ENSSCUG00000010468) #11	ENSSCUG00000010466	MED4 (ENSSCUG00000010465) #13	ITM2B (ENSSCUG00000010463) #15	LPAR6 (ENSSCUG00000010461) #17	RB1 (ENSSCUG00000010428) #16	RCBTB2 (ENSSCUG00000010412) #18	CYSLTR2 (ENSSCUG00000010410) #19	FNDC3A (ENSSCUG00000010406) #20	CDADC1 (ENSSCUG00000010405) #22	CAB39L (ENSSCUG00000010404) #23	SETDB2 (ENSSCUG00000010403) #24	PHF11 (ENSSCUG00000010401) #25	RCBTB1 (ENSSCUG00000010399) #26	KPNA3 (ENSSCUG00000010394) #29	SPRYD7 (ENSSCUG00000010390) #33	TRIM13 (ENSSCUG00000010387) #34	KCNRG (ENSSCUG00000010386) #35	RNASEH2B (ENSSCUG00000010377)	ENSSCUG00000010375	FAM124A (ENSSCUG00000010374)	SERPINE3 (ENSSCUG00000010373)	INTS6 (ENSSCUG00000010371)	WDFY2 (ENSSCUG00000010369)	ENSSCUG00000010366
Australian saltwater crocodile	DUPLICATION
Australian saltwater crocodile	MODERN SPECIES	49	ENSCPRG00005017523	ENSCPRG00005017526	ENSCPRG00005017527	TMTC1 (ENSCPRG00005017546)	IPO8 (ENSCPRG00005017590)	CAPRIN2 (ENSCPRG00005017615)	SINHCAF (ENSCPRG00005017648)	DENND5B (ENSCPRG00005017659)	ENSCPRG00005017686	AMN1 (ENSCPRG00005017690)	ENSCPRG00005017692	BICD1 (ENSCPRG00005017708)	FGD4 (ENSCPRG00005017740)	DNM1L (ENSCPRG00005017783)	YARS2 (ENSCPRG00005017845)	ENSCPRG00005017850 #22	PKP2 (ENSCPRG00005017861)	ENSCPRG00005017869	ENSCPRG00005017874	SYT10 (ENSCPRG00005017878)	SLC13A4 (ENSCPRG00005017885)	FAM180A (ENSCPRG00005017893)	MTPN (ENSCPRG00005017899)	CHRM2 (ENSCPRG00005017908)	PTN (ENSCPRG00005017909)	DGKI (ENSCPRG00005017914)	CREB3L2 (ENSCPRG00005017921)	SSBP1 (ENSCPRG00005017927)	WEE2 (ENSCPRG00005017929)	DENND11 (ENSCPRG00005017935)	AGK (ENSCPRG00005017939)
Australian saltwater crocodile	MODERN SPECIES	27	LCP1 (ENSCPRG00005001844)	RUBCNL (ENSCPRG00005001889)	LRCH1 (ENSCPRG00005001910) #7	ESD (ENSCPRG00005001929) #8	HTR2A (ENSCPRG00005001946) #9	SUCLA2 (ENSCPRG00005002006) #11	NUDT15 (ENSCPRG00005002025) #12	MED4 (ENSCPRG00005002030) #13	ITM2B (ENSCPRG00005002035) #15	RB1 (ENSCPRG00005002044) #16	LPAR6 (ENSCPRG00005002061) #17	RCBTB2 (ENSCPRG00005002083) #18	CYSLTR2 (ENSCPRG00005002091) #19	FNDC3A (ENSCPRG00005002157) #20	MLNR (ENSCPRG00005002169) #21	CDADC1 (ENSCPRG00005002171) #22	CAB39L (ENSCPRG00005002192) #23	SETDB2 (ENSCPRG00005002206) #24	ENSCPRG00005002212	PHF11 (ENSCPRG00005002216) #25	RCBTB1 (ENSCPRG00005002228) #26	KPNA3 (ENSCPRG00005002249) #29	SPRYD7 (ENSCPRG00005002255) #33	TRIM13 (ENSCPRG00005002256) #34	KCNRG (ENSCPRG00005002260) #35	DLEU7 (ENSCPRG00005002287)	RNASEH2B (ENSCPRG00005002315)	ENSCPRG00005002336	FAM124A (ENSCPRG00005002446)	SERPINE3 (ENSCPRG00005002466)	INTS6 (ENSCPRG00005002471)
Anura	ANCESTRAL SPECIES	27														ENSGT00940000159319 #20	ENSGT01100000263484.C.a #21	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000158209 #24	ENSGT00940000155814 #26	ENSGT00940000162731 #27	ENSGT00530000063715.b #28	ENSGT01050000244891.C.c.b #29	ENSGT00390000011048 #33	ENSGT00940000159715 #34	ENSGT00940000161898 #35	ENSGT00390000011737	ENSGT00390000011439	ENSGT00940000162114	ENSGT00590000083134.a.a	ENSGT00940000160941	ENSGT00390000016655.a.a.b
Frog	MODERN SPECIES	2	bcdin3d (ENSXETG00000040078)	faim2 (ENSXETG00000020393)	ENSXETG00000024581	aqp5 (ENSXETG00000024580)	aqp2 (ENSXETG00000020388)	ENSXETG00000013389	XB5780651 [provisional] (ENSXETG00000013385)	racgap1 (ENSXETG00000013383)	smarcd1 (ENSXETG00000013366)	gpd1 (ENSXETG00000013352)	cers5 (ENSXETG00000013344)	lima1 (ENSXETG00000013342)	fndc3a (ENSXETG00000013335) #20	ENSXETG00000047778	ENSXETG00000013318 #21	cdadc1 (ENSXETG00000013314) #22	cab39l (ENSXETG00000015659) #23	setdb2 (ENSXETG00000015666) #24	ENSXETG00000032387 ##25	ENSXETG00000047192 ##25	rcbtb1 (ENSXETG00000015675) #26	arl11 (ENSXETG00000015673) #27	ebpl (ENSXETG00000015682) #28	pamr1 (ENSXETG00000015677) #29	spryd7 (ENSXETG00000015683) #33	trim13 (ENSXETG00000015691) #34	kcnrg (ENSXETG00000034495) #35	dleu7 (ENSXETG00000014093)	rnaseh2b (ENSXETG00000020720)	fam124a (ENSXETG00000027168)	serpine3 (ENSXETG00000032417)
Leishan spiny toad	MODERN SPECIES	5	FAM124A (ENSLLEG00000002844)	ENSLLEG00000002877	ENSLLEG00000002907	RNASEH2B (ENSLLEG00000002974)	ENSLLEG00000003021	KCNRG (ENSLLEG00000003028) #35	ENSLLEG00000003045 #34	EBPL (ENSLLEG00000003054) #28	KPNA3 (ENSLLEG00000003109) #29	SPRYD7 (ENSLLEG00000003208) #33	ARL11 (ENSLLEG00000003227) #27	ENSLLEG00000003241	FNDC3A (ENSLLEG00000003310) #20	ENSLLEG00000003581	ENSLLEG00000003585 #21	CDADC1 (ENSLLEG00000003600) #22	ENSLLEG00000003617	CAB39L (ENSLLEG00000003627) #23	SETDB2 (ENSLLEG00000003660) #24	ENSLLEG00000003754 #26	NUP58 (ENSLLEG00000003896)	SHISA2 (ENSLLEG00000013968)	ATP8A2 (ENSLLEG00000014136)	ENSLLEG00000014656	CDK8 (ENSLLEG00000014701)	ENSLLEG00000015281	WASF3 (ENSLLEG00000015310)	ENSLLEG00000015395	ENSLLEG00000015420	ENSLLEG00000015458	USP12 (ENSLLEG00000015515)
Coelacanth	MODERN SPECIES	843														FNDC3A (ENSLACG00000001668) #20	ENSLACG00000006994 #21	CDADC1 (ENSLACG00000007631) #22	CAB39L (ENSLACG00000008706) #23	SETDB2 (ENSLACG00000009640) #24	RCBTB1 (ENSLACG00000010653) #26	ARL11 (ENSLACG00000011405) #27	EBPL (ENSLACG00000011616) #28	KPNA3 (ENSLACG00000011927) #29	SPRYD7 (ENSLACG00000013011) #33	TRIM13 (ENSLACG00000013356) #34	KCNRG (ENSLACG00000013493) #35
Actinopterygii	ANCESTRAL SPECIES	98																ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000157874	ENSGT00940000157849	ENSGT00940000157872	ENSGT00940000162479.b	ENSGT00940000155360.B	ENSGT00940000156564	ENSGT01060000249379	ENSGT00940000155075.a.a	ENSGT00940000155401	ENSGT00390000006347.b	ENSGT00390000000917	ENSGT00980000198897	ENSGT00940000161024	ENSGT00940000157234
Neopterygii	ANCESTRAL SPECIES	15	ENSGT00390000004660.C.b	ENSGT00950000182852.A.a.b	ENSGT00390000006574	ENSGT00530000064962	ENSGT01090000260076.b.b	ENSGT00390000015719.d	ENSGT00390000011425.B	ENSGT00940000162114	ENSGT00390000011439	ENSGT00940000171515	ENSGT00940000161898 #35	ENSGT00940000159715 #34	ENSGT00390000011048 #33	ENSGT01050000244891.C.c.b #29	ENSGT00940000166383	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000157874	ENSGT00940000157872	ENSGT00940000157849	ENSGT00940000162479.b	ENSGT00940000155360.B	ENSGT00940000156564	ENSGT00940000155401	ENSGT00390000006347.b	ENSGT00390000000917	ENSGT00940000161024	ENSGT00940000157234	ENSGT00940000157678	ENSGT00940000161407	ENSGT00940000158920
Osteoglossocephalai	ANCESTRAL SPECIES	3	ENSGT01090000260076.b.b	ENSGT00390000015719.d	ENSGT00390000011425.B	ENSGT00940000162114	ENSGT00390000003838	ENSGT00390000011439	ENSGT00940000171515	ENSGT00940000161898 #35	ENSGT00940000159715 #34	ENSGT00390000011048 #33	ENSGT01050000244891.C.c.b #29	ENSGT00530000063715.b #28	ENSGT00940000166383	ENSGT00940000155814 #26	ENSGT00950000182865.b.a.b.b.b.a #25	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000157874.q.a	ENSGT00940000157872	ENSGT00940000157849	ENSGT00940000157874.q.b	ENSGT00940000162479.b	ENSGT00940000155360.B	ENSGT00950000182974.b	ENSGT00940000156374	ENSGT00940000163243	ENSGT00390000008846	ENSGT00940000159205	ENSGT00940000161984	ENSGT00390000015645	ENSGT00940000163829
Osteoglossiformes	ANCESTRAL SPECIES	32	ENSGT00390000008856	ENSGT00940000157308.j	ENSGT00530000063558.A.c.a.b	ENSGT00510000047809.j	ENSGT00390000005596.a	ENSGT00940000154317.b	ENSGT00390000004660.C.b	ENSGT00950000182852.A.a.b.f	ENSGT01090000260076.b.b.d	ENSGT00390000015719.d.f	ENSGT00390000011439	ENSGT00940000159715 #34	ENSGT00390000011048.r #33	ENSGT01050000244891.C.c.b.t #29	ENSGT00940000155814.o.a #26	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b.e #23	ENSGT00940000157874.r	ENSGT00940000157872	ENSGT00940000157849.k	ENSGT00940000162479.b	ENSGT00940000155360.B.j	ENSGT00950000182974.b	ENSGT00940000156374	ENSGT00940000163243	ENSGT00390000010868	ENSGT00390000008846	ENSGT00940000159205	ENSGT00940000163031.b.a.a	ENSGT00390000005914.b	ENSGT00940000159177.m
P. kingsleyae	MODERN SPECIES	127										nr0b1 (ENSPKIG00000013421)	rnaseh2b (ENSPKIG00000013386)	trim13 (ENSPKIG00000013357) #34	SPRYD7 (ENSPKIG00000013321) #33	kpna3 (ENSPKIG00000013244) #29	rcbtb1 (ENSPKIG00000013163) #26	cdadc1 (ENSPKIG00000013133) #22	CAB39L (ENSPKIG00000013086) #23	MCF2L (ENSPKIG00000013023)	ENSPKIG00000012982	ATP11A (ENSPKIG00000012753)	ENSPKIG00000012624	ARHGEF7 (ENSPKIG00000012477)	txndc9 (ENSPKIG00000012396)	mrpl30 (ENSPKIG00000012379)	MGAT4A (ENSPKIG00000012322)	coa5 (ENSPKIG00000012293)	si:dkey-4e7.3 (ENSPKIG00000012264)	INPP4A (ENSPKIG00000012052)	slc9a2 (ENSPKIG00000011951)	ENSPKIG00000011935	pou3f3b (ENSPKIG00000011908)
Asian bonytongue	MODERN SPECIES	5	ENSSFOG00015026925	ENSSFOG00015010017	TFG (ENSSFOG00015010050)	jagn1b (ENSSFOG00015010085)	col8a1a (ENSSFOG00015010102)	tmem30c (ENSSFOG00015010122)	FILIP1L (ENSSFOG00015010150)	IL1RAPL1 (ENSSFOG00015010161)	nr0b1 (ENSSFOG00015030959)	rnaseh2b (ENSSFOG00015010190)	dleu7 (ENSSFOG00015010221)	trim13 (ENSSFOG00015010232) #34	SPRYD7 (ENSSFOG00015010238) #33	kpna3 (ENSSFOG00015010262) #29	rcbtb1 (ENSSFOG00015030528) #26	cdadc1 (ENSSFOG00015028089) #22	MCF2L (ENSSFOG00015010397)	ATP11A (ENSSFOG00015010486)	ARHGEF7 (ENSSFOG00015010764)	txndc9 (ENSSFOG00015010960)	mrpl30 (ENSSFOG00015027487)	MGAT4A (ENSSFOG00015010985)	coa5 (ENSSFOG00015011032)	si:dkey-4e7.3 (ENSSFOG00015011049)	INPP4A (ENSSFOG00015011105)	pou3f3b (ENSSFOG00015031593)	GPR45 (ENSSFOG00015011211)	tgfbrap1 (ENSSFOG00015011218)	fhl2b (ENSSFOG00015011237)	ENSSFOG00015028132	nck2b (ENSSFOG00015028086)
Clupeocephala	ANCESTRAL SPECIES	79	ENSGT00390000006574	ENSGT00950000182852.A.a.b.d	ENSGT01090000260076.b.b.b	ENSGT00390000015719.d.d	ENSGT00390000011425.B	ENSGT00390000011439	ENSGT00940000159715 #34	ENSGT00390000011048 #33	ENSGT01050000244891.C.c.b #29	ENSGT00530000063715.b #28	ENSGT00940000166383	ENSGT00940000155814 #26	ENSGT00950000182865.b.a.b.b.b.a #25	ENSGT00940000157874.q.b	ENSGT00940000157849.m.a	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000157874.q.a	ENSGT00940000157872	ENSGT00940000157849.n	ENSGT00940000162479.a	ENSGT00940000155360.B.k	ENSGT00940000163243	ENSGT00390000008846	ENSGT00940000159205	ENSGT00940000163031.b.a.a
Otomorpha	ANCESTRAL SPECIES	267	ENSGT01050000244864.C.f.f	ENSGT00510000046499	ENSGT00940000153577.A	ENSGT00390000013113	ENSGT00940000157065	ENSGT00940000158589.b.b	ENSGT00390000003874.a.b	ENSGT00950000182836.b.b.b.a	ENSGT00940000171515	ENSGT00940000161898 #35	ENSGT00390000011048.w #33	ENSGT01050000244891.C.c.b.q #29	ENSGT00530000063715.b #28	ENSGT00940000166383	ENSGT00940000155814 #26	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000157874.q.a	ENSGT00940000157872	ENSGT00940000157849.n	ENSGT00940000162479.a	ENSGT00940000155360.B.k	ENSGT00940000163243	ENSGT00390000008846
Otophysi	ANCESTRAL SPECIES	25	ENSGT00730000110915.b	ENSGT00510000046499	ENSGT00940000153577.A	ENSGT00390000013113	ENSGT00940000157065	ENSGT00940000158589.b.b	ENSGT00390000003874.a.b	ENSGT00950000182836.b.b.b.a	ENSGT00940000171515	ENSGT00940000161898 #35	ENSGT00390000011048.w #33	ENSGT01050000244891.C.c.b.q #29	ENSGT00530000063715.b #28	ENSGT00940000166383	ENSGT00940000155814 #26	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000157874.q.a	ENSGT00940000157872	ENSGT00940000157849.n	ENSGT00940000162479.a	ENSGT00940000155360.B.k	ENSGT00940000163243	ENSGT00390000008846	ENSGT00940000159130	ENSGT00940000158914	ENSGT00940000154990.fb.a	ENSGT00390000009916	ENSGT00940000154382.a.a.l	ENSGT00950000183036.b.e	ENSGT00390000000976
Characiphysae	ANCESTRAL SPECIES	9	ENSGT00730000110915.b	ENSGT00940000179335	ENSGT00940000153577.A	ENSGT00390000013113	ENSGT00940000157065	ENSGT00940000158589.b.b	ENSGT00390000003874.a.b	ENSGT00950000182836.b.b.b.a	ENSGT00940000171515	ENSGT00940000161898 #35	ENSGT00390000011048.w #33	ENSGT01050000244891.C.c.b.q #29	ENSGT00530000063715.b #28	ENSGT00940000166383	ENSGT00940000155814 #26	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000157874.q.a	ENSGT00940000157872	ENSGT00940000157849.n	ENSGT00940000162479.a	ENSGT00940000155360.B.k	ENSGT00940000163243	ENSGT00390000008846	ENSGT00940000156830.b	ENSGT00940000159666.d	ENSGT00390000003582.d	ENSGT00940000159130	ENSGT00940000158914	ENSGT00940000154990.fb.a	ENSGT00390000009916
Channel catfish	MODERN SPECIES	18	setd4 (ENSIPUG00000020120)	cryzl1 (ENSIPUG00000020153)	ITSN1 (ENSIPUG00000020172)	ENSIPUG00000020221	PKNOX1 (ENSIPUG00000020239)	ENSIPUG00000020258	pdxkb (ENSIPUG00000020281)	agpat3 (ENSIPUG00000020311)	dleu7 (ENSIPUG00000020350)	kcnrg (ENSIPUG00000020361) #35	spryd7 (ENSIPUG00000020366) #33	Kpna3 (ENSIPUG00000020383) #29	ebpl (ENSIPUG00000020403) #28	arl11 (ENSIPUG00000020426)	rcbtb1 (ENSIPUG00000020428) #26	cdadc1 (ENSIPUG00000020446) #22	cab39l (ENSIPUG00000020458) #23	mcf2l (ENSIPUG00000020494)	tubgcp3 (ENSIPUG00000020648)	ENSIPUG00000020693	atp11a (ENSIPUG00000020705)	SOX1 (ENSIPUG00000020846)	arhgef7 (ENSIPUG00000020874)	eif5b (ENSIPUG00000020910)	lipt1 (ENSIPUG00000020941)	ENSIPUG00000020943	PNPLA6 (ENSIPUG00000020961)	map2k7 (ENSIPUG00000021102)	PKN1 (ENSIPUG00000021130)	c26h19orf67 (ENSIPUG00000021206)	ENSIPUG00000021220
Characiphysae_b	ANCESTRAL SPECIES	117	ENSGT01050000244864.C.f.f	ENSGT00730000110915.b	ENSGT00940000179335	ENSGT00940000153577.A	ENSGT00390000013113	ENSGT00940000157065	ENSGT00940000158589.b.b	ENSGT00390000003874.a.b	ENSGT00950000182836.b.b.b.a	ENSGT00940000171515	ENSGT00390000011048.w #33	ENSGT01050000244891.C.c.b.q #29	ENSGT00530000063715.b #28	ENSGT00940000166383	ENSGT00940000155814 #26	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000157874.q.a	ENSGT00940000157872	ENSGT00940000157849.n	ENSGT00940000162479.a	ENSGT00940000155360.B.k	ENSGT00940000163243	ENSGT00390000008846	ENSGT00940000159666.d	ENSGT00390000003582.d	ENSGT00940000159130	ENSGT00940000158914	ENSGT00940000154990.fb.a	ENSGT00390000009916	ENSGT00940000154382.a.a.l
Characoidei	ANCESTRAL SPECIES	147	ENSGT00730000110915.b	ENSGT00940000179335	ENSGT00510000046499	ENSGT00940000153577.A	ENSGT00390000013113	ENSGT00940000157065	ENSGT00940000158589.b.b	ENSGT00390000003874.a.b	ENSGT00950000182836.b.b.b.a	ENSGT00940000171515	ENSGT00390000011048.w #33	ENSGT01050000244891.C.c.b.q #29	ENSGT00530000063715.b #28	ENSGT00940000166383	ENSGT00940000155814 #26	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000157874.q.a	ENSGT00940000157872	ENSGT00940000157849.n	ENSGT00940000162479.a	ENSGT00940000155360.B.k	ENSGT00940000163243	ENSGT00390000008846	ENSGT00940000159666.d	ENSGT00390000003582.d	ENSGT00940000159130	ENSGT00940000158914	ENSGT00940000154990.fb.a	ENSGT00390000009916	ENSGT00940000154382.a.a.l
Red-bellied piranha	MODERN SPECIES	59	cbr1 (ENSPNAG00000029415)	setd4 (ENSPNAG00000029275)	cryzl1 (ENSPNAG00000004544)	ITSN1 (ENSPNAG00000004518)	ENSPNAG00000025611	ENSPNAG00000025605	ENSPNAG00000025569	pdxkb (ENSPNAG00000025536)	agpat3 (ENSPNAG00000004913)	dleu7 (ENSPNAG00000006544)	spryd7a (ENSPNAG00000025399) #33	kpna3 (ENSPNAG00000025361) #29	ebpl (ENSPNAG00000025238) #28	arl11 (ENSPNAG00000025213)	rcbtb1 (ENSPNAG00000025189) #26	cdadc1 (ENSPNAG00000025112) #22	cab39l (ENSPNAG00000025105) #23	MCF2L (ENSPNAG00000025029)	tubgcp3 (ENSPNAG00000024841)	ATP11A (ENSPNAG00000005022)	SOX1 (ENSPNAG00000024384)	arhgef7b (ENSPNAG00000023914)	ENSPNAG00000023852	lipt1 (ENSPNAG00000023826)	ATP5PD (ENSPNAG00000023800)	PNPLA6 (ENSPNAG00000023748)	map2k7 (ENSPNAG00000023527)	PKN1 (ENSPNAG00000023460)	si:ch211-214c7.5 (ENSPNAG00000023282)	ENSPNAG00000023144	mcoln1a (ENSPNAG00000023123)
Mexicana tetra	MODERN SPECIES	3	cryzl1 (ENSAMXG00000037451)	ITSN1 (ENSAMXG00000012436)	ENSAMXG00000012433	ENSAMXG00000012410	ENSAMXG00000012377	pdxkb (ENSAMXG00000012352)	agpat3 (ENSAMXG00000041421)	ENSAMXG00000025823	dleu7 (ENSAMXG00000037461)	spryd7a (ENSAMXG00000040876) #33	ENSAMXG00000041792	kpna3 (ENSAMXG00000012307) #29	ebpl (ENSAMXG00000041654) #28	arl11 (ENSAMXG00000012281)	rcbtb1 (ENSAMXG00000042184) #26	cdadc1 (ENSAMXG00000012223) #22	cab39l (ENSAMXG00000012212) #23	ATP11A (ENSAMXG00000018350)	SOX1 (ENSAMXG00000035402)	ENSAMXG00000030734	ENSAMXG00000039391	arhgef7b (ENSAMXG00000035958)	ENSAMXG00000018383	lipt1 (ENSAMXG00000025104)	ENSAMXG00000040244	PNPLA6 (ENSAMXG00000018423)	map2k7 (ENSAMXG00000018484)	PKN1 (ENSAMXG00000018504)	si:ch211-214c7.5 (ENSAMXG00000018514)	ENSAMXG00000018526	mcoln1a (ENSAMXG00000018550)
Electric eel	MODERN SPECIES	149	cbr1 (ENSEEEG00000023544)	setd4 (ENSEEEG00000023543)	cryzl1 (ENSEEEG00000023542)	ITSN1 (ENSEEEG00000023539)	ENSEEEG00000023531	ENSEEEG00000023530	ENSEEEG00000023529	pdxkb (ENSEEEG00000023528)	agpat3 (ENSEEEG00000023524)	dleu7 (ENSEEEG00000023520)	spryd7a (ENSEEEG00000023517) #33	kpna3 (ENSEEEG00000023036) #29	ebpl (ENSEEEG00000023013) #28	arl11 (ENSEEEG00000023012)	rcbtb1 (ENSEEEG00000023011) #26	cdadc1 (ENSEEEG00000023010) #22	cab39l (ENSEEEG00000023007) #23	MCF2L (ENSEEEG00000023002)	tubgcp3 (ENSEEEG00000023000)	ATP11A (ENSEEEG00000022995)	sox1b (ENSEEEG00000022994)
Cyprinoidei	ANCESTRAL SPECIES	5	ENSGT01050000244864.C.f.f	ENSGT00730000110915.b	ENSGT00510000046499.z.a	ENSGT00940000153577.A	ENSGT00390000013113	ENSGT00940000157065	ENSGT00940000158589.b.b	ENSGT00390000003874.a.b	ENSGT00950000182836.b.b.b.a	ENSGT00940000171515	ENSGT00390000011048.w #33	ENSGT01050000244891.C.c.b.q #29	ENSGT00530000063715.b #28	ENSGT00940000166383	ENSGT00940000155814 #26	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000157874.q.a	ENSGT00940000157872	ENSGT00940000157849.n	ENSGT00940000155360.B.k	ENSGT00940000163243	ENSGT00390000008846	ENSGT00940000159130	ENSGT00940000158914	ENSGT00940000154990.fb.a	ENSGT00390000009916	ENSGT00940000154382.a.a.l	ENSGT00950000183036.b.e	ENSGT00390000000976	ENSGT00530000063960
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	291									ENSGT00950000182836.b.b.b.a.m	ENSGT00940000171515.a	ENSGT00390000011048.w.b #33	ENSGT01050000244891.C.c.b.q.b #29	ENSGT00530000063715.b.f #28	ENSGT00940000166383.b	ENSGT00940000155814.k #26	ENSGT00940000153676.b.i #22	ENSGT00390000004360.a.b.a.a.b.c #23	ENSGT00940000157874.q.a.b	ENSGT00940000157872.g	ENSGT00940000157849.n.a	ENSGT00940000155360.B.k.a	ENSGT00940000163243.b	ENSGT00390000008846.d	ENSGT00940000159130.b	ENSGT00940000158914.c	ENSGT00940000154990.fb.a.b	ENSGT00390000009916	ENSGT00940000154382.a.a.l.b	ENSGT00950000183036.b.e.e	ENSGT00390000000976.f.a	ENSGT00530000063960.c
Cyprininae_a	ANCESTRAL SPECIES	76													ENSGT00530000063715.b.e #28	ENSGT00940000166383.b	ENSGT00940000155814.k #26	ENSGT00940000153676.b.i #22	ENSGT00390000004360.a.b.a.a.b.c #23	ENSGT00940000157874.q.a.b	ENSGT00940000157872.g	ENSGT00940000157849.n.a	ENSGT00940000162479.b.n	ENSGT00940000155360.B.k.a	ENSGT00940000163243.b	ENSGT00390000008846.d	ENSGT00940000159130.b	ENSGT00940000158914.c	ENSGT00940000154990.fb.a.b	ENSGT00390000009916	ENSGT00940000154382.a.a.l.b	ENSGT00950000183036.b.e.e	ENSGT00390000000976.f.a
Golden-line barbel	MODERN SPECIES	748		cbr1 (ENSSGRG00000030544)	setd4 (ENSSGRG00000030545)	cryzl1 (ENSSGRG00000030548)	ITSN1 (ENSSGRG00000030843)	ENSSGRG00000033153	ENSSGRG00000033154	TMPRSS3 (ENSSGRG00000033160)	pdxkb (ENSSGRG00000033163)	agpat3 (ENSSGRG00000033300)	dleu7 (ENSSGRG00000033302)	kpna3 (ENSSGRG00000033321) #29	ebpl (ENSSGRG00000034117) #28	arl11 (ENSSGRG00000034118)	rcbtb1 (ENSSGRG00000034119) #26	cdadc1 (ENSSGRG00000034179) #22	cab39l (ENSSGRG00000034180) #23	MCF2L (ENSSGRG00000034228)
Common carp reference	MODERN SPECIES	27	gja8b (ENSCCRG00000059724)	gja5b (ENSCCRG00000036560)	bcl9 (ENSCCRG00000036555)	cbr1 (ENSCCRG00000016100)	setd4 (ENSCCRG00000016096)	cryzl1 (ENSCCRG00000016091)	ENSCCRG00000023880	ENSCCRG00000029837	ENSCCRG00000024402	pdxkb (ENSCCRG00000015920)	agpat3 (ENSCCRG00000066238)	spryd7a (ENSCCRG00000056049) #33	kpna3 (ENSCCRG00000013681) #29	ebpl (ENSCCRG00000015744) #28	rcbtb1 (ENSCCRG00000015729) #26	cdadc1 (ENSCCRG00000061386) #22	cab39l (ENSCCRG00000058713) #23	ENSCCRG00000013453	tubgcp3 (ENSCCRG00000015786)	ENSCCRG00000015839	sox1b (ENSCCRG00000081551)	arhgef7b (ENSCCRG00000022117)	lipt1 (ENSCCRG00000068783)	ENSCCRG00000029288	ENSCCRG00000022089	map2k7 (ENSCCRG00000034605)	ENSCCRG00000057692	ENSCCRG00000000627	si:ch211-214c7.5 (ENSCCRG00000079126)	mcoln1a (ENSCCRG00000041335)	trappc5 (ENSCCRG00000052406)
Cyprininae	ANCESTRAL SPECIES	38	ENSGT00390000013113.t	ENSGT00940000157065.u	ENSGT00390000008902.kb.l.a.a	ENSGT00940000159505.b	ENSGT00940000158589.b.b.a	ENSGT00390000003874.a.b.f	ENSGT00940000158589.b.b.b	ENSGT00390000003874.a.b.e	ENSGT00950000182836.b.b.b.a.n	ENSGT00940000171515.b	ENSGT00390000011048.w.a #33	ENSGT01050000244891.C.c.b.q.a #29	ENSGT00530000063715.b.e #28	ENSGT00940000166383.a	ENSGT00940000155814.l #26	ENSGT00940000153676.b.j #22	ENSGT00390000004360.a.b.a.a.b.d #23	ENSGT00940000157874.q.a.a	ENSGT00940000157872.h	ENSGT00940000157849.n.b	ENSGT00940000155360.B.k.b	ENSGT00940000163243.a	ENSGT00390000008846.c	ENSGT00940000159130.a	ENSGT00940000158914.d	ENSGT00940000154990.fb.a.a	ENSGT00940000154382.a.a.l.a	ENSGT00950000183036.b.e.f	ENSGT00390000000976.f.b	ENSGT00530000063960.d	ENSGT00940000158004.p
Goldfish	MODERN SPECIES		lrrc58a (ENSCARG00000009666)	fstl1a (ENSCARG00000009617)	gja8b (ENSCARG00000009598)	gja5b (ENSCARG00000009592)	bcl9 (ENSCARG00000009578)	morc3b (ENSCARG00000030064)	cryzl1 (ENSCARG00000029858)	ITSN1 (ENSCARG00000024109)	ENSCARG00000023873	pdxkb (ENSCARG00000023845)	agpat3 (ENSCARG00000023832)	spryd7a (ENSCARG00000023816) #33	kpna3 (ENSCARG00000023539) #29	arl11 (ENSCARG00000023504)	rcbtb1 (ENSCARG00000023134) #26	cdadc1 (ENSCARG00000023111) #22	cab39l (ENSCARG00000023106) #23	MCF2L (ENSCARG00000022778)	tubgcp3 (ENSCARG00000022717)	ENSCARG00000022702	ATP11A (ENSCARG00000022535)	sox1b (ENSCARG00000022507)	arhgef7b (ENSCARG00000020751)	ENSCARG00000020114	lipt1 (ENSCARG00000020094)	PNPLA6 (ENSCARG00000014277)	map2k7 (ENSCARG00000014078)	PKN1 (ENSCARG00000012630)	ENSCARG00000012576	mcoln1a (ENSCARG00000011233)	trappc5 (ENSCARG00000011176)
Cyprininae_a	ANCESTRAL SPECIES	66	ENSGT00390000013113.t	ENSGT00940000157065.u	ENSGT00390000008902.kb.l.a.a	ENSGT00940000159505.b	ENSGT00940000158589.b.b.b	ENSGT00390000003874.a.b.e	ENSGT00950000182836.b.b.b.a.n	ENSGT00940000171515.b	ENSGT00390000011048.w.a #33	ENSGT01050000244891.C.c.b.q.a #29	ENSGT00390000011048.w.b #33	ENSGT01050000244891.C.c.b.q.b #29	ENSGT00530000063715.b.f #28	ENSGT00940000166383.a	ENSGT00940000155814.l #26	ENSGT00940000153676.b.j #22	ENSGT00390000004360.a.b.a.a.b.d #23	ENSGT00940000157874.q.a.a	ENSGT00940000157872.h	ENSGT00940000157849.n.b	ENSGT00940000155360.B.k.b	ENSGT00940000163243.a	ENSGT00390000008846.c	ENSGT00940000159130.a	ENSGT00940000158914.d	ENSGT00940000154990.fb.a.a	ENSGT00940000154382.a.a.l.a	ENSGT00950000183036.b.e.f	ENSGT00390000000976.f.b	ENSGT00530000063960.d	ENSGT00940000158004.p
Common carp reference	MODERN SPECIES	22	ENSCCRG00000060268	ENSCCRG00000081465	cryzl1 (ENSCCRG00000024163)	ENSCCRG00000070675	ENSCCRG00000055587	ENSCCRG00000016032	pdxkb (ENSCCRG00000061747)	dleu7 (ENSCCRG00000019748)	ENSCCRG00000073096	agpat3 (ENSCCRG00000015761)	spryd7a (ENSCCRG00000015462) #33	kpna3 (ENSCCRG00000082723) #29	ebpl (ENSCCRG00000013658) #28	arl11 (ENSCCRG00000015739)	rcbtb1 (ENSCCRG00000013618) #26	cdadc1 (ENSCCRG00000013606) #22	cab39l (ENSCCRG00000074971) #23	ENSCCRG00000015680	tubgcp3 (ENSCCRG00000013430)	ENSCCRG00000057536	ENSCCRG00000026907	arhgef7b (ENSCCRG00000077569)	ENSCCRG00000062970	lipt1 (ENSCCRG00000058177)	ENSCCRG00000039927	map2k7 (ENSCCRG00000067975)	ENSCCRG00000016426	si:ch211-214c7.5 (ENSCCRG00000052425)	ENSCCRG00000062759	mcoln1a (ENSCCRG00000052416)	trappc5 (ENSCCRG00000041302)
Golden-line barbel	MODERN SPECIES	338	setd4 (ENSSGRG00000036078)	cryzl1 (ENSSGRG00000036037)	ITSN1 (ENSSGRG00000035039)	ENSSGRG00000035020	ENSSGRG00000035018	TMPRSS3 (ENSSGRG00000035015)	pdxkb (ENSSGRG00000035005)	agpat3 (ENSSGRG00000035002)	dleu7 (ENSSGRG00000034999)	dleu7 (ENSSGRG00000034998)	kpna3 (ENSSGRG00000033197) #29	ebpl (ENSSGRG00000033176) #28	arl11 (ENSSGRG00000033175)	arl11 (ENSSGRG00000033174)	rcbtb1 (ENSSGRG00000033173) #26	cdadc1 (ENSSGRG00000033171) #22	cab39l (ENSSGRG00000033167) #23	ENSSGRG00000033164	tubgcp3 (ENSSGRG00000032857)	ATP11A (ENSSGRG00000032229)	arhgef7b (ENSSGRG00000030952)	ENSSGRG00000030930	lipt1 (ENSSGRG00000030929)	PNPLA6 (ENSSGRG00000030927)	map2k7 (ENSSGRG00000030917)	PKN1 (ENSSGRG00000028571)	ENSSGRG00000028519	ENSSGRG00000028517	mcoln1a (ENSSGRG00000027966)	trappc5 (ENSSGRG00000027962)	serhl (ENSSGRG00000027961)
Zebrafish	MODERN SPECIES		mhc1zea (ENSDARG00000001470)	setd4 (ENSDARG00000036592)	cryzl1 (ENSDARG00000026902)	ITSN1 (ENSDARG00000000086)	ENSDARG00000089853	PKNOX1 (ENSDARG00000036542)	TMPRSS3 (ENSDARG00000036545)	pdxkb (ENSDARG00000036546)	agpat3 (ENSDARG00000036549)	dleu7 (ENSDARG00000094160)	spryd7a (ENSDARG00000052624) #33	kpna3 (ENSDARG00000052641) #29	ebpl (ENSDARG00000036636) #28	arl11 (ENSDARG00000036637)	rcbtb1 (ENSDARG00000036645) #26	cdadc1 (ENSDARG00000036650) #22	cab39l (ENSDARG00000036658) #23	si:busm1-105l16.2 (ENSDARG00000070858)	MCF2L (ENSDARG00000075859)	tubgcp3 (ENSDARG00000029133)	ATP11A (ENSDARG00000008413)	ENSDARG00000053340	sox1b (ENSDARG00000008131)	ENSDARG00000052677	arhgef7b (ENSDARG00000073848)	ENSDARG00000016548	lipt1 (ENSDARG00000025233)	PNPLA6 (ENSDARG00000010773)	map2k7 (ENSDARG00000008279)	PKN1 (ENSDARG00000060184)	si:ch211-214c7.5 (ENSDARG00000060187)
Clupeiformes	ANCESTRAL SPECIES	123	ENSGT00950000183028.a.a.a.g.b.g.b	ENSGT00530000063596.A.i	ENSGT00390000011204	ENSGT00940000164385.a.a.a.b.d	ENSGT00390000017581.b.b	ENSGT00940000156807.f	ENSGT00940000157360.c	ENSGT00390000018553	ENSGT00940000163031.b.a.a	ENSGT00940000159205	ENSGT00730000111163	ENSGT00940000159160	ENSGT00550000075118	ENSGT00390000009001	ENSGT00940000156552.c.b	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000157874.q.a	ENSGT00940000157872	ENSGT00940000157849.n	ENSGT00940000155360.B.k	ENSGT00940000163243	ENSGT00390000008846	ENSGT00950000183030	ENSGT00940000157128	ENSGT00440000033329.b.a.a	ENSGT00940000155063.c.a.a
Denticle herring	MODERN SPECIES	6	mrps9 (ENSDCDG00000005332)	pou3f3b (ENSDCDG00000005343)	TMEM182 (ENSDCDG00000005344)	inpp4ab (ENSDCDG00000005430)	ENSDCDG00000015334	ENSDCDG00000015335	unc50 (ENSDCDG00000015339)	ENSDCDG00000015342	cpb2 (ENSDCDG00000015354)	alg11 (ENSDCDG00000015384)	spp2 (ENSDCDG00000015395)	raph1b (ENSDCDG00000015420)	rbbp9 (ENSDCDG00000016917)	zmynd10 (ENSDCDG00000016923)	gspt1l (ENSDCDG00000016935)	cdadc1 (ENSDCDG00000016937) #22	cab39l (ENSDCDG00000016942) #23	MCF2L (ENSDCDG00000017005)	tubgcp3 (ENSDCDG00000020521)	ATP11A (ENSDCDG00000020652)	arhgef7b (ENSDCDG00000025684)	ENSDCDG00000028317	lipt1 (ENSDCDG00000028402)	ITLN1 (ENSDCDG00000028405)	rpl31 (ENSDCDG00000028408)	chst10 (ENSDCDG00000028413)	LONRF2 (ENSDCDG00000028414)	ENSDCDG00000028443	ugt1b1 (ENSDCDG00000028733)	ugt1b2 (ENSDCDG00000028735)	ENSDCDG00000028742
Euteleosteomorpha	ANCESTRAL SPECIES	129	ENSGT00940000172034	ENSGT00940000159255	ENSGT01100000263672	ENSGT00940000159602	ENSGT00940000159870	ENSGT01030000234765	ENSGT00940000154840.b.e.a	ENSGT00610000086518	ENSGT01090000260251	ENSGT01030000234540.E	ENSGT00940000158367	ENSGT00940000161679.b	ENSGT00940000153981.A	ENSGT00940000159196	ENSGT00940000155814.m #26	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000157874.q.a	ENSGT00940000157872	ENSGT00940000157849.n.c	ENSGT00940000162479.a	ENSGT00940000155360.B.k	ENSGT00940000163243	ENSGT00390000008846	ENSGT00940000159205	ENSGT00940000163031.b.a.a	ENSGT00390000018553	ENSGT00940000164275.f	ENSGT00940000157360.c	ENSGT00940000156807.f	ENSGT00390000017581.b.b
Protacanthopterygii	ANCESTRAL SPECIES	46	ENSGT00940000154840.b.e.a.c	ENSGT00610000086518	ENSGT01090000260251	ENSGT01030000234540.E	ENSGT00940000158367	ENSGT00940000161679.b	ENSGT00940000153981.A	ENSGT00940000159196	ENSGT00940000154443.e.c	ENSGT00940000155375.n	ENSGT00940000162114	ENSGT01050000244891.C.c.b.p #29	ENSGT00530000063715.b #28	ENSGT00940000166383.c	ENSGT00940000155814.m #26	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000157874.q.a	ENSGT00940000157872	ENSGT00940000157849.n.c	ENSGT00940000155360.B.k	ENSGT00940000163243	ENSGT00390000008846	ENSGT00940000159205	ENSGT00940000163031.b.a.a	ENSGT00390000018553	ENSGT00940000164275.f	ENSGT00940000157360.c	ENSGT00390000017581.b.b	ENSGT00940000164385.a.a.a.b	ENSGT00390000011204
Salmoninae	ANCESTRAL SPECIES	240	ENSGT00610000086518.d.a	ENSGT00970000194096.a	ENSGT00940000158367.g	ENSGT00940000161679.b.c	ENSGT00940000153981.A	ENSGT00940000159196.j.b	ENSGT00970000197763	ENSGT00940000159196.j.a	ENSGT00940000154443.e.c.b.a	ENSGT00940000155375.n	ENSGT00940000162114	ENSGT01050000244891.C.c.b.p.a.b #29	ENSGT00530000063715.b #28	ENSGT00940000166383.c	ENSGT00940000155814.m.c #26	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b.b #23	ENSGT00940000157874.q.a.d	ENSGT00940000157872.j
Salmoninae_a	ANCESTRAL SPECIES	114												ENSGT01050000244891.C.c.b.p.a.b #29	ENSGT00530000063715.b.h #28	ENSGT00940000166383.c.a	ENSGT00940000155814.m.c #26	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b.b #23	ENSGT00940000157874.q.a.d	ENSGT00940000153981.A.e	ENSGT00940000159196.j.a	ENSGT00940000154443.e.c.b.a	ENSGT00940000155375.n	ENSGT00940000162114.e	ENSGT00940000171515.f	ENSGT00940000161898.c #35	ENSGT01050000244891.C.c.b.p.a.a #29	ENSGT00530000063715.b.g #28	ENSGT00940000166383.c.b	ENSGT00940000155814.m.d #26	ENSGT00390000004360.a.b.a.a.b.a.b #23	ENSGT00940000157874.q.a.c.a
Salmo	DUPLICATION
Salmo	ANCESTRAL SPECIES	72	ENSGT00990000204406	ENSGT00970000194096.a	ENSGT00940000158367.g	ENSGT00940000161679.b.c.a	ENSGT00940000153981.A.e	ENSGT00940000159196.j.a	ENSGT00940000154443.e.c.a	ENSGT00940000155375.n.a	ENSGT00940000162114.f	ENSGT00940000171515.e	ENSGT00940000161898.c.b #35	ENSGT01050000244891.C.c.b.p.b #29	ENSGT00530000063715.b.g #28	ENSGT00940000166383.c.b	ENSGT00940000155814.m.d #26	ENSGT00940000153676.b.k #22	ENSGT00390000004360.a.b.a.a.b.b.b #23	ENSGT00940000157874.q.a.d.a	ENSGT00940000157872.i	ENSGT00940000157849.n.c.c	ENSGT00990000211402	ENSGT00940000162479.b.i.b.c.a	ENSGT00940000155360.B.k.c.a	ENSGT00940000163243.f	ENSGT00390000008846.a	ENSGT00940000159205.gb.a	ENSGT00940000163031.b.a.a.d	ENSGT00390000018553.e.b	ENSGT00940000164275.f.f	ENSGT00940000157360.c.i.a	ENSGT00390000017581.b.b.d.b
River trout	MODERN SPECIES	36	ENSSTUG00000026036	ENSSTUG00000026001	slc5a3a (ENSSTUG00000025996)	GPR180 (ENSSTUG00000025932)	TGDS (ENSSTUG00000025848)	ddx3xa (ENSSTUG00000025835)	ENSSTUG00000025824	usp9 (ENSSTUG00000025487)	ENSSTUG00000025461	dleu7 (ENSSTUG00000025385)	KCNRG (ENSSTUG00000025357) #35	kpna3 (ENSSTUG00000025256) #29	ebpl (ENSSTUG00000025250) #28	arl11 (ENSSTUG00000025236)	rcbtb1 (ENSSTUG00000025069) #26	cdadc1 (ENSSTUG00000025022) #22	cab39l (ENSSTUG00000024973) #23	MCF2L (ENSSTUG00000024648)	tubgcp3 (ENSSTUG00000024512)	ATP11A (ENSSTUG00000018974)	sox1b (ENSSTUG00000018630)	arhgef7b (ENSSTUG00000015815)	ENSSTUG00000014720	lipt1 (ENSSTUG00000014646)	tsga10 (ENSSTUG00000014562)	ENSSTUG00000014543	ENSSTUG00000014518	unc50 (ENSSTUG00000014502)	ENSSTUG00000014497	inpp4ab (ENSSTUG00000013043)	ENSSTUG00000012937
Atlantic salmon	MODERN SPECIES	7	ENSSSAG00000091051	ENSSSAG00000079711	ENSSSAG00000079707	slc5a3a (ENSSSAG00000085714)	ENSSSAG00000079697	ENSSSAG00000079694	ENSSSAG00000079779	ENSSSAG00000079297	ENSSSAG00000080764	dleu7 (ENSSSAG00000080791)	ENSSSAG00000094505 #35	kpna3 (ENSSSAG00000077541) #29	ENSSSAG00000089145	arl11 (ENSSSAG00000056018)	rcbtb1 (ENSSSAG00000077678) #26	cdadc1 (ENSSSAG00000101071) #22	cab39l (ENSSSAG00000120036) #23	ENSSSAG00000118166	tubgcp3 (ENSSSAG00000006171)	ENSSSAG00000112221	ENSSSAG00000028853	sox1b (ENSSSAG00000091784)	arhgef7b (ENSSSAG00000039606)	ENSSSAG00000039332	lipt1 (ENSSSAG00000039313)	ENSSSAG00000039034	ENSSSAG00000039005	ENSSSAG00000038673	inpp4ab (ENSSSAG00000031267)	ENSSSAG00000031058	pou3f3b (ENSSSAG00000083901)
Salmo	ANCESTRAL SPECIES	84	ENSGT01030000234540.E	ENSGT00940000158367.h	ENSGT00940000161679.b.c.b	ENSGT00940000153981.A.f	ENSGT00940000159196.j.b	ENSGT00940000154443.e.c.b.a	ENSGT00940000155375.n.b	ENSGT00940000162114.e	ENSGT00940000171515.f	ENSGT00940000161898.c.a #35	ENSGT01050000244891.C.c.b.p.a.a #29	ENSGT01050000244891.C.c.b.p.a.b #29	ENSGT00530000063715.b.h #28	ENSGT00940000166383.c.a	ENSGT00940000155814.m.c #26	ENSGT00940000153676.b.l #22	ENSGT00390000004360.a.b.a.a.b.b.a #23	ENSGT00940000157874.q.a.d.b	ENSGT00940000157872.j	ENSGT00940000157849.n.c.d	ENSGT00940000162479.b.i.b.c.b	ENSGT00940000155360.B.k.d	ENSGT00940000163243.e
River trout	MODERN SPECIES	32	ENSSTUG00000030697	ENSSTUG00000030707	PTGFRN (ENSSTUG00000030732)	slc5a3a (ENSSTUG00000030745)	GPR180 (ENSSTUG00000030880)	TGDS (ENSSTUG00000030908)	ddx3xa (ENSSTUG00000031022)	usp9 (ENSSTUG00000037972)	ENSSTUG00000044268	dleu7 (ENSSTUG00000044380)	KCNRG (ENSSTUG00000044408) #35	kpna3 (ENSSTUG00000044425) #29	ebpl (ENSSTUG00000044760) #28	rcbtb1 (ENSSTUG00000044772) #26	arl11 (ENSSTUG00000044979)	cdadc1 (ENSSTUG00000044992) #22	cab39l (ENSSTUG00000045018) #23	ENSSTUG00000045116	tubgcp3 (ENSSTUG00000045146)	ATP11A (ENSSTUG00000045283)	sox1b (ENSSTUG00000046415)	ARHGEF7 (ENSSTUG00000046486)	ENSSTUG00000047795	tsga10 (ENSSTUG00000047918)	ENSSTUG00000047938	ENSSTUG00000047943	unc50 (ENSSTUG00000047952)	ENSSTUG00000047983	inpp4ab (ENSSTUG00000048010)	ENSSTUG00000048288	pou3f3b (ENSSTUG00000048292)
Atlantic salmon	MODERN SPECIES	8	ENSSSAG00000099420	ENSSSAG00000068973	ENSSSAG00000085505	ENSSSAG00000079285	PTGFRN (ENSSSAG00000073103)	slc5a3a (ENSSSAG00000122098)	ENSSSAG00000119794	ENSSSAG00000109921	ENSSSAG00000073268	ENSSSAG00000069234	ENSSSAG00000077498	ENSSSAG00000106472 #35	kpna3 (ENSSSAG00000080845) #29	arl11 (ENSSSAG00000100002)	rcbtb1 (ENSSSAG00000056005) #26	cdadc1 (ENSSSAG00000006006) #22	cab39l (ENSSSAG00000077705) #23	ENSSSAG00000077786	tubgcp3 (ENSSSAG00000078807)	ENSSSAG00000078974	sox1b (ENSSSAG00000028805)	arhgef7b (ENSSSAG00000045555)	ENSSSAG00000053976	LIPB (ENSSSAG00000053997)	ENSSSAG00000113836	ENSSSAG00000083176	ENSSSAG00000054862	ENSSSAG00000054854	inpp4ab (ENSSSAG00000054024)	tm182 (ENSSSAG00000030984)	pou3f3b (ENSSSAG00000101862)
Oncorhynchus	DUPLICATION
Oncorhynchus	ANCESTRAL SPECIES	74	ENSGT00940000153981.A.e	ENSGT00940000159196.j.a.b	ENSGT00940000154443.e.c.b.a	ENSGT00940000155375.n.c	ENSGT00940000162114.f.a	ENSGT00940000171515.e	ENSGT00940000161898.d #35	ENSGT01050000244891.C.c.b.p.a.b #29	ENSGT00530000063715.b.h #28	ENSGT00940000166383.c.a	ENSGT00940000155814.m.c #26	ENSGT01050000244891.C.c.b.p.a.a #29	ENSGT00530000063715.b.g #28	ENSGT00940000166383.c.b	ENSGT00940000155814.m.d #26	ENSGT00940000153676.b.m #22	ENSGT00390000004360.a.b.a.a.b.a.b #23	ENSGT00940000157874.q.a.c.a.a	ENSGT00940000157872.i	ENSGT00940000157849.n.c.f	ENSGT00940000155360.B.k.d	ENSGT00940000157849.n.c.e	ENSGT00990000211402	ENSGT00940000162479.b.i.b	ENSGT00940000155360.B.k.c	ENSGT00940000163243.f	ENSGT00390000008846.a.d	ENSGT00940000159205.fb.b	ENSGT00390000008846.a.c	ENSGT00940000159205.fb.a.b	ENSGT00940000163031.b.a.a.f
Oncorhynchus_a	ANCESTRAL SPECIES	92	ENSGT00990000204406	ENSGT00970000194096.a.d	ENSGT00940000158367.g	ENSGT00940000161679.b.c.d	ENSGT00940000153981.A.e	ENSGT00940000159196.j.a.a	ENSGT00940000154443.e.c.b.b	ENSGT00940000155375.n.d	ENSGT00940000162114.e	ENSGT00940000171515.f	ENSGT00940000161898.c #35	ENSGT01050000244891.C.c.b.p.a.a #29	ENSGT00530000063715.b.g #28	ENSGT00940000166383.c.b	ENSGT00940000155814.m.d #26	ENSGT00940000153676.b.m #22	ENSGT00390000004360.a.b.a.a.b.a.b #23	ENSGT00940000157874.q.a.c.a.a	ENSGT00940000162479.b.i.b.a	ENSGT00940000155360.B.k.c	ENSGT00940000157872.i	ENSGT00940000157849.n.c.f	ENSGT00940000155360.B.k.d	ENSGT00940000163243.f	ENSGT00390000008846.a.d	ENSGT00940000159205.fb.b	ENSGT00940000159205.fb.a.a	ENSGT00940000163031.b.a.a.f	ENSGT00390000018553.e.b	ENSGT00940000164275.f.f	ENSGT00940000157360.c.j.b.a
Chinook salmon	MODERN SPECIES	116																cdadc1 (ENSOTSG00005024560) #22	cab39l (ENSOTSG00005024562) #23	MCF2L (ENSOTSG00005024563)	tubgcp3 (ENSOTSG00005024565)	ENSOTSG00005024615	sox1b (ENSOTSG00005024616)	arhgef7b (ENSOTSG00005024624)	ENSOTSG00005029598	lipt1 (ENSOTSG00005029599)	tsga10 (ENSOTSG00005029600)	ENSOTSG00005029602	unc50 (ENSOTSG00005029604)	ENSOTSG00005029609
Coho salmon	MODERN SPECIES	25	ENSOKIG00005008917	ENSOKIG00005014037	ENSOKIG00005014059	ENSOKIG00005014076	slc5a3a (ENSOKIG00005014102)	GPR180 (ENSOKIG00005014115)	TGDS (ENSOKIG00005014267)	ENSOKIG00005014299	ENSOKIG00005014550	ENSOKIG00005014853	KCNRG (ENSOKIG00005014921) #35	kpna3 (ENSOKIG00005014988) #29	ebpl (ENSOKIG00005016008) #28	arl11 (ENSOKIG00005016014)	rcbtb1 (ENSOKIG00005016063) #26	cdadc1 (ENSOKIG00005016236) #22	cab39l (ENSOKIG00005016247) #23	MCF2L (ENSOKIG00005016350)	tubgcp3 (ENSOKIG00005017748)	ATP11A (ENSOKIG00005017874)	arhgef7b (ENSOKIG00005018087)	ENSOKIG00005018911	lipt1 (ENSOKIG00005019106)	tsga10 (ENSOKIG00005019118)	ENSOKIG00005019152	unc50 (ENSOKIG00005019172)	inpp4ab (ENSOKIG00005019209)	ENSOKIG00005019508	ENSOKIG00005019513	ENSOKIG00005019520	ENSOKIG00005019544
Rainbow trout	MODERN SPECIES	9	ENSOMYG00000009898	ENSOMYG00000009922	slc5a3a (ENSOMYG00000009933)	ENSOMYG00000009973	ENSOMYG00000010050	ENSOMYG00000066791	ENSOMYG00000011039	ENSOMYG00000018232	ENSOMYG00000018572	dleu7 (ENSOMYG00000018629)	ENSOMYG00000018791 #35	kpna3 (ENSOMYG00000018683) #29	ebpl (ENSOMYG00000018854) #28	arl11 (ENSOMYG00000018860)	rcbtb1 (ENSOMYG00000018880) #26	cdadc1 (ENSOMYG00000019003) #22	cab39l (ENSOMYG00000018807) #23	ENSOMYG00000019219	ENSOMYG00000077286	tubgcp3 (ENSOMYG00000019677)	ENSOMYG00000019988	ENSOMYG00000049268	sox1b (ENSOMYG00000021249)	arhgef7b (ENSOMYG00000021518)	ENSOMYG00000022188	lipt1 (ENSOMYG00000022239)	ENSOMYG00000022246	ENSOMYG00000022260	ENSOMYG00000059228	ENSOMYG00000019074	ENSOMYG00000019107
Oncorhynchus	ANCESTRAL SPECIES	313																ENSGT00940000153676.b.n #22	ENSGT00390000004360.a.b.a.a.b.a.a #23	ENSGT00940000157874.q.a.c.b
Oncorhynchus_a	ANCESTRAL SPECIES	193						ENSGT00940000159196.j.a.b	ENSGT00940000154443.e.c.b.a	ENSGT00940000155375.n.c	ENSGT00940000162114.f.a	ENSGT00940000171515.e	ENSGT00940000161898.d #35	ENSGT01050000244891.C.c.b.p.a.b #29	ENSGT00530000063715.b.h #28	ENSGT00940000166383.c.a	ENSGT00940000155814.m.c #26	ENSGT00940000153676.b.n #22	ENSGT00390000004360.a.b.a.a.b.a.a #23	ENSGT00940000157874.q.a.c.a.b
Chinook salmon	MODERN SPECIES	31	ENSOTSG00005024133	ENSOTSG00005024132	ENSOTSG00005024131	ENSOTSG00005024130	ENSOTSG00005024128	slc5a3a (ENSOTSG00005024008)	ENSOTSG00005023807	ENSOTSG00005023805	ddx3xa (ENSOTSG00005022849)	usp9 (ENSOTSG00005018018)	ENSOTSG00005017976	ENSOTSG00005017975	KCNRG (ENSOTSG00005017968) #35	kpna3 (ENSOTSG00005017759) #29	rcbtb1 (ENSOTSG00005017729) #26	cdadc1 (ENSOTSG00005017727) #22	cab39l (ENSOTSG00005017677) #23	tubgcp3 (ENSOTSG00005017670)	kdm6al (ENSOTSG00005013700)	ENSOTSG00005013695	ENSOTSG00005013694	ENSOTSG00005013656	ENSOTSG00005007425	ENSOTSG00005003425	ENSOTSG00005003393	ENSOTSG00005003389	ENSOTSG00005003385	cybb (ENSOTSG00005003381)	ENSOTSG00005003376	ENSOTSG00005003370	tspan7b (ENSOTSG00005003367)
Huchen	MODERN SPECIES	1602							slc5a3a (ENSHHUG00000035868)	GPR180 (ENSHHUG00000035874)	TGDS (ENSHHUG00000035880)	ddx3xa (ENSHHUG00000035949)	usp9 (ENSHHUG00000037621)	ENSHHUG00000037697	KCNRG (ENSHHUG00000037706) #35	kpna3 (ENSHHUG00000037720) #29	rcbtb1 (ENSHHUG00000038000) #26	cdadc1 (ENSHHUG00000038059) #22	cab39l (ENSHHUG00000038064) #23	MCF2L (ENSHHUG00000038132)	tubgcp3 (ENSHHUG00000038435)	ENSHHUG00000038544	ENSHHUG00000038562
Northern pike	MODERN SPECIES	21	ENSELUG00000004230	ENSELUG00000004351	ENSELUG00000004373	ENSELUG00000004437	slc5a3a (ENSELUG00000004466)	GPR180 (ENSELUG00000004484)	TGDS (ENSELUG00000004517)	ddx3xa (ENSELUG00000004613)	usp9 (ENSELUG00000004816)	ENSELUG00000001490	kpna3 (ENSELUG00000004957) #29	ATP1A1 (ENSELUG00000032711)	ebpl (ENSELUG00000005023) #28	arl11 (ENSELUG00000000140)	rcbtb1 (ENSELUG00000005067) #26	cdadc1 (ENSELUG00000005120) #22	cab39l (ENSELUG00000005160) #23	MCF2L (ENSELUG00000005447)	tubgcp3 (ENSELUG00000005567)	sox1b (ENSELUG00000005792)	ATP11A (ENSELUG00000005738)	arhgef7b (ENSELUG00000005907)	ENSELUG00000001132	lipt1 (ENSELUG00000005979)	tsga10 (ENSELUG00000006038)	ENSELUG00000006099	unc50 (ENSELUG00000033269)	inpp4ab (ENSELUG00000006294)	ENSELUG00000006350	pou3f3b (ENSELUG00000006369)	mrps9 (ENSELUG00000006431)
Acanthomorphata	ANCESTRAL SPECIES	367															ENSGT00940000155814.m #26	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000157874.q.a	ENSGT00390000003152
Euacanthomorphacea	ANCESTRAL SPECIES	120						ENSGT00940000153514.b.m.b	ENSGT00390000018553	ENSGT00940000164275.f	ENSGT00940000157269.a.b	ENSGT00940000155360.B.k	ENSGT00940000162479.a	ENSGT00940000157849.n.c	ENSGT00940000157872	ENSGT00940000156984.a.a	ENSGT00940000155814.m #26	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000157874.q.a	ENSGT00390000003152	ENSGT01030000234513.B.b.d	ENSGT01050000244864.B.b.a.a
Percomorphaceae	ANCESTRAL SPECIES	95	ENSGT00390000007055	ENSGT00940000154348.c.b.a.b.b	ENSGT00940000159848	ENSGT00940000166946	ENSGT00940000153514.b.m.b	ENSGT00390000018553	ENSGT00940000164275.f.c	ENSGT00940000164275.f.d	ENSGT00940000157269.a.b	ENSGT00940000155360.B.k	ENSGT00940000162479.a	ENSGT00940000157849.n.c	ENSGT00940000157872	ENSGT00940000156984.a.a	ENSGT00940000155814.m #26	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000157874.q.a
Tiger tail seahorse	MODERN SPECIES	275	atg13 (ENSHCOG00000008662)	creb3l1 (ENSHCOG00000008669)	zgc:110699 (ENSHCOG00000008681)	ndufs1 (ENSHCOG00000008721)	unc50 (ENSHCOG00000008739)	ENSHCOG00000008746	ENSHCOG00000008753	ENSHCOG00000008878	ENSHCOG00000008925	SOX1 (ENSHCOG00000008937)	ATP11A (ENSHCOG00000009108)	tubgcp3 (ENSHCOG00000009182)	ENSHCOG00000009194	ENSHCOG00000009214	rcbtb1 (ENSHCOG00000009243) #26	cdadc1 (ENSHCOG00000009258) #22	cab39l (ENSHCOG00000009280) #23	MCF2L (ENSHCOG00000009356)	ENSHCOG00000009403	ARHGEF7 (ENSHCOG00000009454)	ENSHCOG00000009568	MAP4K4 (ENSHCOG00000009697)	chst10 (ENSHCOG00000009716)	chst10 (ENSHCOG00000009726)	rpl31 (ENSHCOG00000009739)	ENSHCOG00000009742	cpb2 (ENSHCOG00000000303)	alg11 (ENSHCOG00000009773)	raph1b (ENSHCOG00000009809)	ENSHCOG00000009834	ENSHCOG00000009853
Percomorphaceae_B	ANCESTRAL SPECIES	22	ENSGT00390000007055	ENSGT00940000154348.c.b.a.b.b	ENSGT00940000159848	ENSGT00940000166946	ENSGT00940000153514.b.m.b	ENSGT00390000018553	ENSGT00940000164275.f.c	ENSGT00940000164275.f.d	ENSGT00940000157269.a.b	ENSGT00940000155360.B.k	ENSGT00940000162479.a	ENSGT00940000157849.n.c	ENSGT00940000157872	ENSGT00940000156984.a.a	ENSGT00940000155814.m #26	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000157874.q.a	ENSGT01090000260082.d.a.b.o.a	ENSGT00940000155107.b.a	ENSGT00940000155063.a.b	ENSGT00940000157128	ENSGT00950000183030	ENSGT00730000111163	ENSGT00940000165996	ENSGT01030000235083	ENSGT00940000159160	ENSGT00550000075118.k	ENSGT00390000009001	ENSGT00940000156552.c.b	ENSGT00990000203779
Ovalentaria	ANCESTRAL SPECIES	23	ENSGT00940000155502	ENSGT00390000007055	ENSGT00940000154348.c.b.a.b.b	ENSGT00940000159848	ENSGT00940000166946	ENSGT00940000153514.b.m.b	ENSGT00390000018553	ENSGT00940000164275.f.d	ENSGT00940000157269.a.b	ENSGT00940000155360.B.k	ENSGT00940000162479.a	ENSGT00940000157849.n.c	ENSGT00940000157872	ENSGT00940000156984.a.a	ENSGT00940000155814.m #26	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000157874.q.a	ENSGT01090000260082.d.a.b.o.a	ENSGT00940000155107.b.a	ENSGT00940000155063.a.b	ENSGT00940000157128	ENSGT00950000183030	ENSGT00730000111163	ENSGT00940000165996	ENSGT01030000235083	ENSGT00940000159160	ENSGT00550000075118.k	ENSGT00390000009001	ENSGT00940000156552.c.b	ENSGT00990000203779
Atherinomorphae	ANCESTRAL SPECIES	24	ENSGT00940000155502	ENSGT00390000007055	ENSGT00940000154348.c.b.a.b.b	ENSGT00940000159848	ENSGT00940000166946	ENSGT00940000153514.b.m.b	ENSGT00390000018553	ENSGT00940000164275.f.d	ENSGT00940000157269.a.b	ENSGT00940000155360.B.k	ENSGT00940000162479.a	ENSGT00940000157849.n.c	ENSGT00940000157872	ENSGT00940000156984.a.a	ENSGT00940000155814.m #26	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000157874.q.a	ENSGT01090000260082.d.a.b.o.a	ENSGT00940000155107.b.a	ENSGT00940000155063.a.b	ENSGT00940000157128	ENSGT00950000183030	ENSGT00730000111163	ENSGT00940000165996	ENSGT01030000235083	ENSGT00940000159160	ENSGT00550000075118.k	ENSGT00940000156552.c.b	ENSGT00990000203779	ENSGT01030000234607.A.b
Oryzias	ANCESTRAL SPECIES	26	ENSGT00940000155502	ENSGT00390000007055	ENSGT00940000154348.c.b.a.b.b	ENSGT00940000159848	ENSGT00940000166946	ENSGT00940000153514.b.m.b	ENSGT00390000018553	ENSGT00940000164275.f.d	ENSGT00940000157269.a.b	ENSGT00940000155360.B.k	ENSGT00940000162479.a	ENSGT00940000157849.n.c	ENSGT00940000157872	ENSGT00940000156984.a.a	ENSGT00940000155814.m #26	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000157874.q.a	ENSGT01090000260082.d.a.b.o.a	ENSGT00940000156271	ENSGT00940000160594.g.b	ENSGT00950000182897.B.a.b.b.b	ENSGT01030000234567.B.a.a.b.a.b	ENSGT00950000183214.a.b.a.b.f.b.b	ENSGT00940000155270.i.b	ENSGT00940000156160.b.a	ENSGT00390000000862	ENSGT00950000183019.f.b.b.d	ENSGT00940000164110	ENSGT00530000063410.b	ENSGT01030000234607.A.b
Oryzias_b	ANCESTRAL SPECIES	76												ENSGT00940000157849.n.c	ENSGT00940000157872	ENSGT00940000156984.a.a	ENSGT00940000155814.m #26	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000157874.q.a	ENSGT01090000260082.d.a.b.o.a	ENSGT00940000156271	ENSGT00940000160594.g.b	ENSGT00950000182897.B.a.b.b.b	ENSGT01030000234567.B.a.a.b.a.b	ENSGT00950000183214.a.b.a.b.f.b.b	ENSGT00940000155270.i.b	ENSGT00940000156160.b.a	ENSGT00390000000862	ENSGT00950000183019.f.b.b.d	ENSGT00940000164110	ENSGT00530000063410.b	ENSGT01030000234607.A.b
Javanese ricefish	MODERN SPECIES	11	ENSOJAG00000015130	ENSOJAG00000014906	ENSOJAG00000014858	ENSOJAG00000014842	ENSOJAG00000014830	ENSOJAG00000014810	ENSOJAG00000014789	ENSOJAG00000014783	ENSOJAG00000014771	tubgcp3 (ENSOJAG00000011847)	FGF14 (ENSOJAG00000011821)	ENSOJAG00000011800	ENSOJAG00000011745	ENSOJAG00000011730	rcbtb1 (ENSOJAG00000011586) #26	cdadc1 (ENSOJAG00000011573) #22	cab39l (ENSOJAG00000011564) #23	MCF2L (ENSOJAG00000009688)	ENSOJAG00000008325	mrpl39 (ENSOJAG00000008285)	ENSOJAG00000008271	mbnl2 (ENSOJAG00000008159)	ENSOJAG00000008127	ENSOJAG00000008098	ENSOJAG00000008044	ENSOJAG00000008014	nrp2a (ENSOJAG00000005308)	cnppd1 (ENSOJAG00000004998)	ENSOJAG00000004832	retreg2 (ENSOJAG00000004813)	mdh1b (ENSOJAG00000004804)
Indian medaka	MODERN SPECIES	24	ENSOMEG00000000226	ENSOMEG00000000829	WHRN (ENSOMEG00000009151)	stxbp1b (ENSOMEG00000009138)	ABCA2 (ENSOMEG00000009062)	FUT7 (ENSOMEG00000008898)	ENSOMEG00000008890	niban2b (ENSOMEG00000008877)	FHIP2B (ENSOMEG00000008805)	dnm1b (ENSOMEG00000008742)	ENSOMEG00000008681	ATP11A (ENSOMEG00000008640)	tubgcp3 (ENSOMEG00000008513)	FGF14 (ENSOMEG00000008408)	rcbtb1 (ENSOMEG00000008349) #26	cdadc1 (ENSOMEG00000008283) #22	cab39l (ENSOMEG00000008249) #23	MCF2L (ENSOMEG00000008166)	ENSOMEG00000007964	ENSOMEG00000007881	rap2ab (ENSOMEG00000007869)	mbnl2 (ENSOMEG00000007821)	ENSOMEG00000007712	ENSOMEG00000007702	ENSOMEG00000007632	ENSOMEG00000007428	nrp2a (ENSOMEG00000007409)	abcb6a (ENSOMEG00000007360)	cnppd1 (ENSOMEG00000007313)	ENSOMEG00000007283	retreg2 (ENSOMEG00000007242)
Oryzias_a	ANCESTRAL SPECIES	28	ENSGT00530000063970.f.db.a	ENSGT00940000155502	ENSGT00390000007055	ENSGT00940000159848	ENSGT00940000166946	ENSGT00940000153514.b.m.b	ENSGT00390000018553	ENSGT00940000164275.f.d	ENSGT00940000157269.a.b	ENSGT00940000155360.B.k	ENSGT00940000162479.a	ENSGT00940000157849.n.c	ENSGT00940000157872	ENSGT00940000156984.a.a	ENSGT00940000155814.m #26	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000157874.q.a	ENSGT01090000260082.d.a.b.o.a	ENSGT00940000156271	ENSGT00940000160594.g.b	ENSGT00950000182897.B.a.b.b.b	ENSGT01030000234567.B.a.a.b.a.b	ENSGT00950000183214.a.b.a.b.f.b.b	ENSGT00940000155270.i.b	ENSGT00940000156160.b.a	ENSGT00390000000862	ENSGT00950000183019.f.b.b.d	ENSGT00940000164110	ENSGT00530000063410.b	ENSGT01030000234607.A.b
Japanese Medaka HdrR	MODERN SPECIES	11	kpnb3 (ENSORLG00000006133)	atg13 (ENSORLG00000006065)	creb3l1 (ENSORLG00000006015)	zgc:110699 (ENSORLG00000006012)	NDUFS1 (ENSORLG00000006003)	unc50 (ENSORLG00000005956)	ENSORLG00000023138	ENSORLG00000005884	arhgef7b (ENSORLG00000005832)	ENSORLG00000027672	ATP11A (ENSORLG00000005793)	tubgcp3 (ENSORLG00000005732)	ENSORLG00000025057	ENSORLG00000025753	rcbtb1 (ENSORLG00000005672) #26	cdadc1 (ENSORLG00000005666) #22	cab39l (ENSORLG00000005654) #23	ENSORLG00000005630	ENSORLG00000005481	mrpl39 (ENSORLG00000005447)	rap2ab (ENSORLG00000005426)	mbnl2 (ENSORLG00000005419)	ENSORLG00000005414	ENSORLG00000025601	nrp2a (ENSORLG00000005395)	abcb6a (ENSORLG00000005333)	cnppd1 (ENSORLG00000005312)	ENSORLG00000005307	retreg2 (ENSORLG00000005285)	mdh1b (ENSORLG00000005272)	ENSORLG00000005262
Chinese medaka	MODERN SPECIES	23		zgc:172122 (ENSOSIG00000011797)	ENSOSIG00000011803	kpnb3 (ENSOSIG00000011804)	atg13 (ENSOSIG00000011810)	creb3l1 (ENSOSIG00000011813)	ndufs1 (ENSOSIG00000011814)	unc50 (ENSOSIG00000012150)	ENSOSIG00000012151	ENSOSIG00000012152	arhgef7b (ENSOSIG00000012154)	ATP11A (ENSOSIG00000012166)	tubgcp3 (ENSOSIG00000013177)	ENSOSIG00000013183	rcbtb1 (ENSOSIG00000013184) #26	cdadc1 (ENSOSIG00000013188) #22	cab39l (ENSOSIG00000013191) #23	MCF2L (ENSOSIG00000013196)	ENSOSIG00000013224	mrpl39 (ENSOSIG00000013673)	rap2ab (ENSOSIG00000013675)	mbnl2 (ENSOSIG00000013683)	ENSOSIG00000013793	nrp2a (ENSOSIG00000013827)	abcb6a (ENSOSIG00000000003)	cnppd1 (ENSOSIG00000000013)	retreg2 (ENSOSIG00000000032)	ENSOSIG00000000045	ENSOSIG00000000052	raph1b (ENSOSIG00000000169)	alg11 (ENSOSIG00000000590)
Cyprinodontiformes	ANCESTRAL SPECIES	25	ENSGT00940000155502	ENSGT00390000007055	ENSGT00940000154348.c.b.a.b.b	ENSGT00940000159848	ENSGT00940000166946	ENSGT00940000153514.b.m.b	ENSGT00390000018553	ENSGT00940000164275.f.d	ENSGT00940000157269.a.b	ENSGT00940000155360.B.k	ENSGT00940000162479.a	ENSGT00940000157849.n.c	ENSGT00940000157872	ENSGT00940000156984.a.a	ENSGT00940000155814.m #26	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000157874.q.a	ENSGT01090000260082.d.a.b.o.a	ENSGT00940000155107.b.a	ENSGT00940000155063.a.b	ENSGT00940000157128	ENSGT00950000183030	ENSGT00730000111163	ENSGT00940000159160	ENSGT00550000075118.k	ENSGT00940000156552.c.b	ENSGT00990000203779	ENSGT01030000234607.A.b	ENSGT00530000063410.b	ENSGT00940000164110
Aplocheiloidei	ANCESTRAL SPECIES	37	ENSGT00940000156712.a	ENSGT00940000155502	ENSGT00390000007055	ENSGT00940000154348.c.b.a.b.b	ENSGT00940000159848	ENSGT00940000153514.b.m.b	ENSGT00390000018553	ENSGT00940000164275.f.d	ENSGT00940000157269.a.b	ENSGT00940000155360.B.k	ENSGT00940000162479.a	ENSGT00940000157849.n.c	ENSGT00940000157872	ENSGT00940000156984.a.a	ENSGT00940000155814.m #26	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000157874.q.a	ENSGT01090000260082.d.a.b.o.a	ENSGT00940000155107.b.a	ENSGT00940000155063.a.b	ENSGT00940000157128	ENSGT00730000111163	ENSGT00950000183030	ENSGT00940000159160	ENSGT00550000075118.k	ENSGT00940000156552.c.b	ENSGT00990000203779	ENSGT01030000234607.A.b	ENSGT00530000063410.b	ENSGT00940000164110
Mangrove rivulus	MODERN SPECIES	132	ENSKMAG00000010470	ENSKMAG00000010505	cnot9 (ENSKMAG00000010565)	ENSKMAG00000010629	ENSKMAG00000010672	zc3h13 (ENSKMAG00000010701)	ENSKMAG00000010754	ENSKMAG00000010829	arhgef7b (ENSKMAG00000010994)	SOX1 (ENSKMAG00000011088)	ATP11A (ENSKMAG00000011106)	ENSKMAG00000011159	tubgcp3 (ENSKMAG00000011185)	FGF14 (ENSKMAG00000011283)	rcbtb1 (ENSKMAG00000011318) #26	cdadc1 (ENSKMAG00000011381) #22	cab39l (ENSKMAG00000011414) #23	ENSKMAG00000011510	ENSKMAG00000011652	ENSKMAG00000011694	MAP4K4 (ENSKMAG00000011765)	chst10 (ENSKMAG00000011926)	ENSKMAG00000011945	rpl31 (ENSKMAG00000011989)	unc50 (ENSKMAG00000012064)	ndufs1 (ENSKMAG00000012091)	creb3l1 (ENSKMAG00000012148)	HARBI1 (ENSKMAG00000012173)	atg13 (ENSKMAG00000012194)	kpnb3 (ENSKMAG00000012235)	SEMA5B (ENSKMAG00000012302)
Turquoise killifish	MODERN SPECIES	1615	CACNA2D4 (ENSNFUG00015016367)	ENSNFUG00015016482	Nfu_g_1_014069 (ENSNFUG00015016532)	CAT (ENSNFUG00015017059)	BX005076.1 (ENSNFUG00015017214)	HMG20A (ENSNFUG00015017220)	ENSNFUG00015017224	ENSNFUG00015017227	LINGO1A (ENSNFUG00015017235)	Nfu_g_1_008684 (ENSNFUG00015017237)	ATP11A (ENSNFUG00015017359)	tubgcp3 (ENSNFUG00015020355)	Nfu_g_1_008660 (ENSNFUG00015020483)	ENSNFUG00015020497	rcbtb1 (ENSNFUG00015020504) #26	CDADC1 (ENSNFUG00015020521) #22	cab39l (ENSNFUG00015020524) #23	MCF2L (ENSNFUG00015020529)	ENSNFUG00015020539	ENSNFUG00015020544	ZC3H12C (ENSNFUG00015020892)	MAP4K4 (ENSNFUG00015020909)	chst10 (ENSNFUG00015021219)	ZC3H13 (ENSNFUG00015021222)	cpb2 (ENSNFUG00015021229)	ALG11 (ENSNFUG00015021241)	raph1b (ENSNFUG00015021263)	ENSNFUG00015021828	FASTKD2 (ENSNFUG00015021833)	mdh1b (ENSNFUG00015021836)	FAM134A (ENSNFUG00015021837)
Cyprinodontoidei	ANCESTRAL SPECIES	26	ENSGT00940000155502	ENSGT00390000007055	ENSGT00940000154348.c.b.a.b.b	ENSGT00940000159848	ENSGT00940000166946	ENSGT00940000153514.b.m.b	ENSGT00390000018553	ENSGT00940000164275.f.d	ENSGT00940000157269.a.b	ENSGT00940000155360.B.k	ENSGT00940000162479.a	ENSGT00940000157849.n.c	ENSGT00940000157872	ENSGT00940000156984.a.a	ENSGT00940000155814.m #26	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000157874.q.a	ENSGT01090000260082.d.a.b.o.a	ENSGT00940000155107.b.a	ENSGT00940000155063.a.b	ENSGT00940000157128	ENSGT00950000183030	ENSGT00730000111163	ENSGT00940000159160	ENSGT00550000075118.k	ENSGT00940000156552.c.b	ENSGT00990000203779	ENSGT01030000234607.A.b	ENSGT00530000063410.b	ENSGT00940000164110
NAME_4	ANCESTRAL SPECIES	76	ENSGT00940000155502	ENSGT00390000007055	ENSGT00940000154348.c.b.a.b.b	ENSGT00940000159848	ENSGT00940000166946	ENSGT00940000153514.b.m.b	ENSGT00390000018553	ENSGT00940000164275.f.d	ENSGT00940000157269.a.b	ENSGT00940000155360.B.k	ENSGT00940000162479.a	ENSGT00940000157849.n.c	ENSGT00940000157872	ENSGT00940000156984.a.a	ENSGT00940000155814.m #26	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000157874.q.a	ENSGT01090000260082.d.a.b.o.a	ENSGT00940000155107.b.a	ENSGT00940000155063.a.b	ENSGT00940000157128	ENSGT00950000183030	ENSGT00730000111163	ENSGT00940000159160	ENSGT00550000075118.k	ENSGT00940000156552.c.b	ENSGT00990000203779	ENSGT01030000234607.A.b	ENSGT00530000063410.b	ENSGT00940000164110
Mummichog	MODERN SPECIES	980	kpnb3 (ENSFHEG00000023049)	atg13 (ENSFHEG00000022890)	HARBI1 (ENSFHEG00000022776)	creb3l1 (ENSFHEG00000022751)	zgc:110699 (ENSFHEG00000022741)	ndufs1 (ENSFHEG00000022721)	unc50 (ENSFHEG00000022689)	ENSFHEG00000022674	ENSFHEG00000022659	arhgef7b (ENSFHEG00000022472)	SOX1 (ENSFHEG00000022335)	ATP11A (ENSFHEG00000022327)	tubgcp3 (ENSFHEG00000022234)	FGF14 (ENSFHEG00000022154)	rcbtb1 (ENSFHEG00000000545) #26	cdadc1 (ENSFHEG00000022087) #22	cab39l (ENSFHEG00000022080) #23	ENSFHEG00000021973	ENSFHEG00000021320	RDX (ENSFHEG00000021311)	ENSFHEG00000021225	MAP4K4 (ENSFHEG00000021093)	chst10 (ENSFHEG00000020855)	rpl31 (ENSFHEG00000020810)	ENSFHEG00000020795	ENSFHEG00000020784	cpb2 (ENSFHEG00000020769)	alg11 (ENSFHEG00000020747)	raph1b (ENSFHEG00000020732)	ENSFHEG00000020630	ENSFHEG00000020606
Sheepshead minnow	MODERN SPECIES	1142														FGF14 (ENSCVAG00000022572)	rcbtb1 (ENSCVAG00000022601) #26	cdadc1 (ENSCVAG00000000580) #22	cab39l (ENSCVAG00000022626) #23	MCF2L (ENSCVAG00000022857)
Poeciliinae	ANCESTRAL SPECIES	23	ENSGT00940000155502	ENSGT00390000007055	ENSGT00940000154348.c.b.a.b.b	ENSGT00940000159848	ENSGT00940000166946	ENSGT00940000153514.b.m.b	ENSGT00390000018553	ENSGT00940000164275.f.d	ENSGT00940000157269.a.b	ENSGT00940000155360.B.k	ENSGT00940000162479.a	ENSGT00940000157849.n.c	ENSGT00940000157872	ENSGT00940000156984.a.a	ENSGT00940000155814.m #26	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000157874.q.a	ENSGT01090000260082.d.a.b.o.a	ENSGT00940000155107.b.a	ENSGT00940000155063.a.b	ENSGT00940000157128	ENSGT00950000183030	ENSGT00730000111163	ENSGT00940000159160	ENSGT00550000075118.k	ENSGT00940000156552.c.b	ENSGT00990000203779	ENSGT01030000234607.A.b	ENSGT00530000063410.b	ENSGT00940000164110
Poecilia	ANCESTRAL SPECIES	30	ENSGT00940000155502	ENSGT00390000007055	ENSGT00940000154348.c.b.a.b.b	ENSGT00940000159848	ENSGT00940000166946	ENSGT00940000153514.b.m.b	ENSGT00390000018553	ENSGT00940000164275.f.d	ENSGT00940000157269.a.b	ENSGT00940000155360.B.k	ENSGT00940000162479.a	ENSGT00940000157849.n.c	ENSGT00940000157872	ENSGT00940000156984.a.a	ENSGT00940000155814.m #26	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000157874.q.a	ENSGT01090000260082.d.a.b.o.a	ENSGT00940000155107.b.a	ENSGT00940000155063.a.b	ENSGT00940000157128	ENSGT00950000183030	ENSGT00730000111163	ENSGT00940000159160	ENSGT00550000075118.k	ENSGT00940000156552.c.b	ENSGT00990000203779	ENSGT01030000234607.A.b	ENSGT00530000063410.b	ENSGT00940000164110
NAME_6	ANCESTRAL SPECIES	58	ENSGT00940000155502	ENSGT00390000007055	ENSGT00940000154348.c.b.a.b.b	ENSGT00940000159848	ENSGT00940000166946	ENSGT00940000153514.b.m.b	ENSGT00390000018553	ENSGT00940000164275.f.d	ENSGT00940000157269.a.b	ENSGT00940000155360.B.k	ENSGT00940000162479.a	ENSGT00940000157849.n.c	ENSGT00940000157872	ENSGT00940000156984.a.a	ENSGT00940000155814.m #26	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000157874.q.a	ENSGT01090000260082.d.a.b.o.a	ENSGT00940000155107.b.a	ENSGT00940000155063.a.b	ENSGT00940000157128	ENSGT00950000183030	ENSGT00730000111163	ENSGT00940000159160	ENSGT00550000075118.k	ENSGT00940000156552.c.b	ENSGT00990000203779	ENSGT01030000234607.A.b	ENSGT00530000063410.b	ENSGT00940000164110
Amazon molly	MODERN SPECIES	424						ndufs1 (ENSPFOG00000009828)	unc50 (ENSPFOG00000009782)	ENSPFOG00000009665	ENSPFOG00000009145	arhgef7b (ENSPFOG00000008784)	SOX1 (ENSPFOG00000008756)	ATP11A (ENSPFOG00000007727)	tubgcp3 (ENSPFOG00000007253)	ENSPFOG00000007177	rcbtb1 (ENSPFOG00000007065) #26	cdadc1 (ENSPFOG00000006959) #22	cab39l (ENSPFOG00000006848) #23	MCF2L (ENSPFOG00000006017)	RDX (ENSPFOG00000005891)	ENSPFOG00000005817	MAP4K4 (ENSPFOG00000005245)	chst10 (ENSPFOG00000005122)	rpl31 (ENSPFOG00000005045)	zc3h13 (ENSPFOG00000005039)	cpb2 (ENSPFOG00000004589)	alg11 (ENSPFOG00000004511)	raph1b (ENSPFOG00000004388)	ENSPFOG00000004383	ENSPFOG00000004234	mdh1b (ENSPFOG00000004105)	retreg2 (ENSPFOG00000003980)
Sailfin molly	MODERN SPECIES	431															rcbtb1 (ENSPLAG00000009299) #26	cdadc1 (ENSPLAG00000009337) #22	cab39l (ENSPLAG00000009362) #23	MCF2L (ENSPLAG00000009785)	RDX (ENSPLAG00000009857)	ENSPLAG00000009867	MAP4K4 (ENSPLAG00000013930)	rpl31 (ENSPLAG00000000326)	chst10 (ENSPLAG00000014083)	zc3h13 (ENSPLAG00000014095)	cpb2 (ENSPLAG00000014129)	alg11 (ENSPLAG00000014143)	raph1b (ENSPLAG00000014205)	ENSPLAG00000014230	ENSPLAG00000014235	mdh1b (ENSPLAG00000014290)	retreg2 (ENSPLAG00000014309)
Guppy	MODERN SPECIES	450	atg13 (ENSPREG00000011716)	ENSPREG00000011695	creb3l1 (ENSPREG00000011677)	zgc:110699 (ENSPREG00000011654)	ndufs1 (ENSPREG00000011596)	ENSPREG00000011576	unc50 (ENSPREG00000011559)	ENSPREG00000011543	arhgef7b (ENSPREG00000011503)	SOX1 (ENSPREG00000011495)	ATP11A (ENSPREG00000011298)	tubgcp3 (ENSPREG00000011155)	FGF14 (ENSPREG00000011119)	ENSPREG00000011113	rcbtb1 (ENSPREG00000011094) #26	cdadc1 (ENSPREG00000011072) #22	cab39l (ENSPREG00000011055) #23	MCF2L (ENSPREG00000010906)	RDX (ENSPREG00000010856)	ENSPREG00000010838	MAP4K4 (ENSPREG00000010791)	chst10 (ENSPREG00000010751)	rpl31 (ENSPREG00000010564)	zc3h13 (ENSPREG00000010526)	cpb2 (ENSPREG00000010459)	alg11 (ENSPREG00000010439)	raph1b (ENSPREG00000010336)	ENSPREG00000010293	ENSPREG00000010256	mdh1b (ENSPREG00000010234)	retreg2 (ENSPREG00000010208)
Platyfish	MODERN SPECIES	16	creb3l1 (ENSXMAG00000004363)	zgc:110699 (ENSXMAG00000004365)	ndufs1 (ENSXMAG00000004367)	unc50 (ENSXMAG00000023458)	ENSXMAG00000025674	ENSXMAG00000004406	arhgef7b (ENSXMAG00000004492)	SOX1 (ENSXMAG00000019447)	ATP11A (ENSXMAG00000012027)	tubgcp3 (ENSXMAG00000026366)	ENSXMAG00000012158	ENSXMAG00000021122	ENSXMAG00000021861	ENSXMAG00000026344	rcbtb1 (ENSXMAG00000013757) #26	cdadc1 (ENSXMAG00000012166) #22	cab39l (ENSXMAG00000017334) #23	MCF2L (ENSXMAG00000012216)	RDX (ENSXMAG00000012314)	ENSXMAG00000027171	MAP4K4 (ENSXMAG00000012364)	chst10 (ENSXMAG00000028772)	rpl31 (ENSXMAG00000012419)	zc3h13 (ENSXMAG00000012423)	cpb2 (ENSXMAG00000012438)	alg11 (ENSXMAG00000012465)	raph1b (ENSXMAG00000012467)	ENSXMAG00000024149	ENSXMAG00000012482	mdh1b (ENSXMAG00000012494)	retreg2 (ENSXMAG00000025935)
Ovalentaria_B	ANCESTRAL SPECIES	22	ENSGT00390000007055	ENSGT00940000154348.c.b.a.b.b	ENSGT00940000159848	ENSGT00940000166946	ENSGT00940000153514.b.m.b	ENSGT00390000018553	ENSGT00940000164275.f.c	ENSGT00940000164275.f.d	ENSGT00940000157269.a.b	ENSGT00940000155360.B.k	ENSGT00940000162479.a	ENSGT00940000157849.n.c	ENSGT00940000157872	ENSGT00940000156984.a.a	ENSGT00940000155814.m #26	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000157874.q.a	ENSGT01090000260082.d.a.b.o.a	ENSGT00940000155107.b.a	ENSGT00940000155063.a.b	ENSGT00940000157128	ENSGT00950000183030	ENSGT00730000111163	ENSGT00940000159160	ENSGT00550000075118.k	ENSGT00390000009001	ENSGT00940000156552.c.b	ENSGT00990000203779	ENSGT01030000234607.A.b	ENSGT00530000063410.b
Pomacentridae	ANCESTRAL SPECIES	71	ENSGT00940000156712.a	ENSGT00940000155502	ENSGT00390000007055	ENSGT00940000154348.c.b.a.b.b	ENSGT00940000159848	ENSGT00940000166946	ENSGT00940000153514.b.m.b	ENSGT00390000018553	ENSGT00940000157269.a.b	ENSGT00940000155360.B.k	ENSGT00940000162479.a	ENSGT00940000157849.n.c	ENSGT00940000157872	ENSGT00940000156984.a.a	ENSGT00940000155814.m #26	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000157874.q.a	ENSGT01090000260082.d.a.b.o.a.b	ENSGT00940000155107.b.a	ENSGT00940000155063.a.b	ENSGT00940000157128	ENSGT00950000183030	ENSGT00940000155466.e.a	ENSGT00390000016929	ENSGT00940000154342.C.qe	ENSGT00940000154342.C.re	ENSGT00530000063484.b.b.d.b	ENSGT00390000003758	ENSGT00940000153534.A	ENSGT00930000150950.b
Pomacentridae_A	ANCESTRAL SPECIES	101	ENSGT00530000063410.b	ENSGT01030000234607.A.b	ENSGT00990000203779	ENSGT00940000156552.c.b	ENSGT00390000009001	ENSGT00550000075118.k	ENSGT00940000159160	ENSGT00730000111163	ENSGT00940000155360.B.k	ENSGT00940000162479.a	ENSGT00940000157849.n.c	ENSGT00940000157872	ENSGT00940000156984.a.a	ENSGT01090000260059.a.b.b.b.a.c.a.b.d	ENSGT00940000155814.m #26	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000157874.q.a	ENSGT01090000260082.d.a.b.o.a.b	ENSGT00940000155107.b.a
Amphiprion	ANCESTRAL SPECIES	123	ENSGT00530000063410.b	ENSGT01030000234607.A.b	ENSGT00990000203779	ENSGT00940000156552.c.b	ENSGT00390000009001	ENSGT00550000075118.k	ENSGT00940000159160	ENSGT00730000111163	ENSGT00940000155360.B.k	ENSGT00940000162479.a	ENSGT00940000157849.n.c	ENSGT00940000157872	ENSGT00940000156984.a.a	ENSGT01090000260059.a.b.b.b.a.c.a.b.d.b	ENSGT00940000155814.m #26	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000157874.q.a	ENSGT01090000260082.d.a.b.o.a.b	ENSGT00940000155107.b.a
Clown anemonefish	MODERN SPECIES	2639															rcbtb1 (ENSAOCG00000004209) #26	cdadc1 (ENSAOCG00000004184) #22	cab39l (ENSAOCG00000004164) #23	MCF2L (ENSAOCG00000004146)
Orange clownfish	MODERN SPECIES	16	mdh1b (ENSAPEG00000004592)	ENSAPEG00000004691	ENSAPEG00000004708	raph1b (ENSAPEG00000004718)	spp2 (ENSAPEG00000004789)	alg11 (ENSAPEG00000004804)	cpb2 (ENSAPEG00000004843)	zc3h13 (ENSAPEG00000004887)	arhgef7b (ENSAPEG00000004982)	SOX1 (ENSAPEG00000005036)	ATP11A (ENSAPEG00000005069)	tubgcp3 (ENSAPEG00000005196)	ENSAPEG00000005306	ENSAPEG00000005327	rcbtb1 (ENSAPEG00000005344) #26	cdadc1 (ENSAPEG00000005395) #22	cab39l (ENSAPEG00000005485) #23	MCF2L (ENSAPEG00000005516)	ENSAPEG00000005643	ENSAPEG00000005727	abcc4 (ENSAPEG00000005953)	cldn10a (ENSAPEG00000006629)	ENSAPEG00000006701	ENSAPEG00000006755	CLDN10 (ENSAPEG00000006775)	dzip1 (ENSAPEG00000006809)	ENSAPEG00000006827	klhl41b (ENSAPEG00000006845)	ENSAPEG00000006875	atp5f1b (ENSAPEG00000006965)	DHRS9 (ENSAPEG00000007023)
Spiny chromis	MODERN SPECIES	611												tubgcp3 (ENSAPOG00000015810)	FGF14 (ENSAPOG00000015697)	ENSAPOG00000015659	rcbtb1 (ENSAPOG00000015640) #26	cdadc1 (ENSAPOG00000015585) #22	cab39l (ENSAPOG00000015569) #23	MCF2L (ENSAPOG00000015516)	ENSAPOG00000015442	ENSAPOG00000015376	ENSAPOG00000015355
Bicolor damselfish	MODERN SPECIES	456					zgc:110699 (ENSSPAG00000010365)	ENSSPAG00000010352	ndufs1 (ENSSPAG00000010291)	unc50 (ENSSPAG00000010252)	ENSSPAG00000010212	arhgef7b (ENSSPAG00000010140)	SOX1 (ENSSPAG00000010125)	ATP11A (ENSSPAG00000009986)	tubgcp3 (ENSSPAG00000009874)	FGF14 (ENSSPAG00000009847)	rcbtb1 (ENSSPAG00000009819) #26	cdadc1 (ENSSPAG00000009801) #22	cab39l (ENSSPAG00000009771) #23	MCF2L (ENSSPAG00000009584)	RDX (ENSSPAG00000009513)	ENSSPAG00000009485	MAP4K4 (ENSSPAG00000009217)	chst10 (ENSSPAG00000009171)	rpl31 (ENSSPAG00000009164)
Cichlidae	ANCESTRAL SPECIES	30							ENSGT00940000164275.f.d	ENSGT00940000157269.a.b	ENSGT00940000155360.B.k	ENSGT00940000160560.b.f.a.b.a.b	ENSGT00940000162479.a	ENSGT00940000157849.n.c	ENSGT00940000157872	ENSGT00940000156984.a.a	ENSGT00940000155814.m #26	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000157874.q.a	ENSGT01090000260082.d.a.b.o.a	ENSGT00940000155107.b.a	ENSGT00940000155063.a.b	ENSGT00940000157128	ENSGT00950000183030	ENSGT00730000111163	ENSGT00940000159160	ENSGT00550000075118.k	ENSGT00390000009001	ENSGT00940000156552.c.b	ENSGT00990000203779	ENSGT01030000234607.A.b	ENSGT00530000063410.b
Pseudocrenilabrinae	ANCESTRAL SPECIES	25	ENSGT00940000154348.c.b.a.b.b	ENSGT00390000007055	ENSGT00940000155502	ENSGT00940000156712.a	ENSGT00950000182837.b.b.c.b	ENSGT00940000164275.f.d	ENSGT00940000157269.a.b	ENSGT00940000155360.B.k	ENSGT00940000160560.b.f.a.b.a.b.h	ENSGT00940000160560.b.f.a.b.a.b.g.b	ENSGT00940000162479.a	ENSGT00940000157849.n.c	ENSGT00940000157872	ENSGT00940000156984.a.a	ENSGT00940000155814.m #26	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000157874.q.a	ENSGT01090000260082.d.a.b.o.a	ENSGT00940000155107.b.a	ENSGT00940000155063.a.b	ENSGT00940000157128	ENSGT00950000183030	ENSGT00730000111163	ENSGT00940000159160	ENSGT00550000075118.k	ENSGT00390000009001	ENSGT00940000156552.c.b	ENSGT00990000203779	ENSGT01030000234607.A.b	ENSGT00530000063410.b
Nile tilapia	MODERN SPECIES	14	creb3l1 (ENSONIG00000015219)	HARBI1 (ENSONIG00000015216)	atg13 (ENSONIG00000015211)	kpnb3 (ENSONIG00000015196)	SEMA5B (ENSONIG00000015189)	CACNB4 (ENSONIG00000015177)	ENSONIG00000031938	ENSONIG00000015175	arhgef7b (ENSONIG00000015169)	ENSONIG00000013227	SOX1 (ENSONIG00000021020)	ATP11A (ENSONIG00000012309)	tubgcp3 (ENSONIG00000012305)	ENSONIG00000012303	rcbtb1 (ENSONIG00000012298) #26	cdadc1 (ENSONIG00000012296) #22	cab39l (ENSONIG00000012288) #23	MCF2L (ENSONIG00000012277)	ENSONIG00000012273	ENSONIG00000012268	MAP4K4 (ENSONIG00000012256)	chst10 (ENSONIG00000012254)	rpl31 (ENSONIG00000033747)	zc3h13 (ENSONIG00000012236)	cpb2 (ENSONIG00000012227)	alg11 (ENSONIG00000012226)	spp2 (ENSONIG00000039515)	raph1b (ENSONIG00000012220)	ENSONIG00000037064	ENSONIG00000012215	mdh1b (ENSONIG00000012210)
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	29	ENSGT00940000154348.c.b.a.b.b	ENSGT00390000007055	ENSGT00940000155502	ENSGT00940000156712.a	ENSGT00950000182837.b.b.c.b	ENSGT00940000164275.f.d	ENSGT00940000157269.a.b	ENSGT00940000155360.B.k	ENSGT00940000160560.b.f.a.b.a.b.h	ENSGT00940000160560.b.f.a.b.a.b.g.b	ENSGT00940000162479.a	ENSGT00940000157849.n.c	ENSGT00940000157872	ENSGT00940000156984.a.a	ENSGT00940000155814.m #26	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000157874.q.a	ENSGT01090000260082.d.a.b.o.a	ENSGT00940000155107.b.a	ENSGT00940000155063.a.b	ENSGT00940000157128	ENSGT00950000183030	ENSGT00730000111163	ENSGT00940000159160	ENSGT00550000075118.k	ENSGT00390000009001	ENSGT00940000156552.c.b	ENSGT00990000203779	ENSGT01030000234607.A.b	ENSGT00530000063410.b
Haplochromini	ANCESTRAL SPECIES	26	ENSGT00390000007055	ENSGT00940000155502	ENSGT00940000156712.a	ENSGT00950000182837.b.b.c.b	ENSGT00940000164275.f.d.e.b	ENSGT00940000164275.f.d.e.a	ENSGT00940000157269.a.b	ENSGT00940000155360.B.k	ENSGT00940000160560.b.f.a.b.a.b.h	ENSGT00940000160560.b.f.a.b.a.b.g.b	ENSGT00940000162479.a	ENSGT00940000157849.n.c	ENSGT00940000157872	ENSGT00940000156984.a.a	ENSGT00940000155814.m #26	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000157874.q.a	ENSGT01090000260082.d.a.b.o.a	ENSGT00940000155107.b.a	ENSGT00940000155063.a.b	ENSGT00940000157128	ENSGT00950000183030	ENSGT00730000111163	ENSGT00940000159160	ENSGT00550000075118.k	ENSGT00390000009001	ENSGT00940000156552.c.b	ENSGT00990000203779	ENSGT01030000234607.A.b	ENSGT00530000063410.b
Haplochromini_A	ANCESTRAL SPECIES	29	ENSGT00390000007055	ENSGT00940000155502	ENSGT00940000156712.a	ENSGT00950000182837.b.b.c.b	ENSGT00940000164275.f.d.e.b	ENSGT00940000164275.f.d.e.a	ENSGT00940000157269.a.b	ENSGT00940000155360.B.k	ENSGT00940000160560.b.f.a.b.a.b.h	ENSGT00940000160560.b.f.a.b.a.b.g.b	ENSGT00940000162479.a	ENSGT00940000157849.n.c	ENSGT00940000157872	ENSGT00940000156984.a.a	ENSGT00940000155814.m #26	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000157874.q.a	ENSGT01090000260082.d.a.b.o.a	ENSGT00940000155107.b.a	ENSGT00940000155063.a.b	ENSGT00940000157128	ENSGT00950000183030	ENSGT00730000111163	ENSGT00940000159160	ENSGT00550000075118.k	ENSGT00390000009001	ENSGT00940000156552.c.b	ENSGT00990000203779	ENSGT01030000234607.A.b	ENSGT00530000063410.b
Haplochromini_B	ANCESTRAL SPECIES	38	ENSGT00940000159848	ENSGT00940000154348.c.b.a.b.b	ENSGT00390000007055	ENSGT00940000155502	ENSGT00940000156712.a	ENSGT00950000182837.b.b.c.b	ENSGT00940000164275.f.d.e.b	ENSGT00940000164275.f.d.e.a	ENSGT00940000157269.a.b	ENSGT00940000155360.B.k	ENSGT00940000162479.a	ENSGT00940000157849.n.c	ENSGT00940000157872	ENSGT00940000156984.a.a	ENSGT00940000155814.m #26	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000157874.q.a	ENSGT01090000260082.d.a.b.o.a	ENSGT00940000155107.b.a	ENSGT00940000155063.a.b	ENSGT00940000157128	ENSGT00950000183030	ENSGT00730000111163	ENSGT00940000159160.e	ENSGT00550000075118.k	ENSGT00390000009001	ENSGT00940000156552.c.b	ENSGT00990000203779	ENSGT01030000234607.A.b	ENSGT00530000063410.b
Zebra mbuna	MODERN SPECIES	1105	ENSMZEG00005008395	ENSMZEG00005008384	crygs3 (ENSMZEG00005008376)	ENSMZEG00005008361	ENSMZEG00005008344	ENSMZEG00005008329	ENSMZEG00005008301	ENSMZEG00005008283	ENSMZEG00005008263	SOX1 (ENSMZEG00005008255)	ATP11A (ENSMZEG00005008109)	tubgcp3 (ENSMZEG00005008024)	ENSMZEG00005008003	ENSMZEG00005007986	rcbtb1 (ENSMZEG00005007967) #26	cdadc1 (ENSMZEG00005007951) #22	cab39l (ENSMZEG00005007925) #23	MCF2L (ENSMZEG00005007790)	ENSMZEG00005007733	ENSMZEG00005007718	MAP4K4 (ENSMZEG00005007556)	chst10 (ENSMZEG00005007508)	rpl31 (ENSMZEG00005007495)	zc3h13 (ENSMZEG00005007473)	cpb2 (ENSMZEG00005007453)	ENSMZEG00005007444	raph1b (ENSMZEG00005007411)	spp2 (ENSMZEG00005007388)	raph1b (ENSMZEG00005005956)	ENSMZEG00005005871	ENSMZEG00005005856
Eastern happy	MODERN SPECIES	14	unc50 (ENSACLG00000002394)	ndufs1 (ENSACLG00000002346)	zgc:110699 (ENSACLG00000002333)	creb3l1 (ENSACLG00000002322)	HARBI1 (ENSACLG00000002296)	atg13 (ENSACLG00000002212)	kpnb3 (ENSACLG00000002083)	SEMA5B (ENSACLG00000001991)	CACNB4 (ENSACLG00000001924)	ENSACLG00000001848	ENSACLG00000001817	ENSACLG00000001793	arhgef7b (ENSACLG00000001666)	ENSACLG00000001652	ENSACLG00000001609	cdadc1 (ENSACLG00000001587) #22	cab39l (ENSACLG00000001540) #23	MCF2L (ENSACLG00000001155)	ENSACLG00000001047	ENSACLG00000027924	MAP4K4 (ENSACLG00000027913)	chst10 (ENSACLG00000027912)	rpl31 (ENSACLG00000027911)	zc3h13 (ENSACLG00000027909)	cpb2 (ENSACLG00000027901)	alg11 (ENSACLG00000027899)	spp2 (ENSACLG00000027900)	raph1b (ENSACLG00000027897)	ENSACLG00000027896	ENSACLG00000027894	mdh1b (ENSACLG00000027891)
P. nyererei	MODERN SPECIES	335												ATP11A (ENSPNYG00000015407)	tubgcp3 (ENSPNYG00000015478)	ENSPNYG00000015558	rcbtb1 (ENSPNYG00000015578) #26	cdadc1 (ENSPNYG00000015610) #22	cab39l (ENSPNYG00000015625) #23	MCF2L (ENSPNYG00000015707)	ENSPNYG00000015828	ENSPNYG00000015874	MAP4K4 (ENSPNYG00000015893)	chst10 (ENSPNYG00000015962)	rpl31 (ENSPNYG00000015985)	zc3h13 (ENSPNYG00000016000)	cpb2 (ENSPNYG00000016049)	alg11 (ENSPNYG00000016075)	spp2 (ENSPNYG00000016100)	raph1b (ENSPNYG00000016134)	ENSPNYG00000016292	ENSPNYG00000016302	mdh1b (ENSPNYG00000016342)
Burton s mouthbrooder	MODERN SPECIES	303												ATP11A (ENSHBUG00000006502)	tubgcp3 (ENSHBUG00000006619)	ENSHBUG00000006660	rcbtb1 (ENSHBUG00000006708) #26	cdadc1 (ENSHBUG00000006723) #22	cab39l (ENSHBUG00000006743) #23	MCF2L (ENSHBUG00000006771)	ENSHBUG00000006815	ENSHBUG00000006831	MAP4K4 (ENSHBUG00000007019)	chst10 (ENSHBUG00000007072)	rpl31 (ENSHBUG00000007089)	zc3h13 (ENSHBUG00000007100)	cpb2 (ENSHBUG00000007107)	ENSHBUG00000007121	spp2 (ENSHBUG00000007129)	raph1b (ENSHBUG00000007232)	ENSHBUG00000007244	ENSHBUG00000007258	mdh1b (ENSHBUG00000007343)
Lyretail cichlid	MODERN SPECIES	422										ENSNBRG00000006386	ENSNBRG00000006414	ATP11A (ENSNBRG00000006492)	tubgcp3 (ENSNBRG00000006602)	ENSNBRG00000006660	rcbtb1 (ENSNBRG00000006687) #26	cdadc1 (ENSNBRG00000006723) #22	cab39l (ENSNBRG00000006797) #23	MCF2L (ENSNBRG00000006866)	RDX (ENSNBRG00000006927)	ENSNBRG00000006978	ENSNBRG00000006985	ENSNBRG00000007007	chst10 (ENSNBRG00000007049)	rpl31 (ENSNBRG00000007076)	ENSNBRG00000007093	cpb2 (ENSNBRG00000007109)	alg11 (ENSNBRG00000007121)	ENSNBRG00000007138	raph1b (ENSNBRG00000007182)	ENSNBRG00000007222	ENSNBRG00000007232
Midas cichlid	MODERN SPECIES	353																cdadc1 (ENSACIG00000001563) #22	cab39l (ENSACIG00000001525) #23	MCF2L (ENSACIG00000001448)	ENSACIG00000001412	ENSACIG00000001362	MAP4K4 (ENSACIG00000001297)	chst10 (ENSACIG00000001277)	rpl31 (ENSACIG00000001260)	zc3h13 (ENSACIG00000001200)	cpb2 (ENSACIG00000001169)	alg11 (ENSACIG00000001151)	spp2 (ENSACIG00000001105)	raph1b (ENSACIG00000000865)	ENSACIG00000000837	mdh1b (ENSACIG00000000744)	ENSACIG00000000704
Percomorphaceae_C	ANCESTRAL SPECIES	23	ENSGT00390000007055	ENSGT00940000154348.c.b.a.b.b	ENSGT00940000159848	ENSGT00940000166946	ENSGT00940000153514.b.m.b	ENSGT00390000018553	ENSGT00940000164275.f.c	ENSGT00940000164275.f.d	ENSGT00940000157269.a.b	ENSGT00940000155360.B.k	ENSGT00940000162479.a	ENSGT00940000157849.n.c	ENSGT00940000157872	ENSGT00940000156984.a.a	ENSGT00940000155814.m #26	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000157874.q.a	ENSGT01090000260082.d.a.b.o.a	ENSGT00940000155107.b.a	ENSGT00940000155063.a.b	ENSGT00940000157128	ENSGT00950000183030	ENSGT00730000111163	ENSGT00940000165996	ENSGT01030000235083	ENSGT00940000159160	ENSGT00550000075118.k	ENSGT00390000009001	ENSGT00940000156552.c.b	ENSGT00990000203779
Eupercaria	ANCESTRAL SPECIES	23	ENSGT00390000007055	ENSGT00940000154348.c.b.a.b.b	ENSGT00940000159848	ENSGT00940000166946	ENSGT00940000153514.b.m.b	ENSGT00390000018553	ENSGT00940000164275.f.c	ENSGT00940000164275.f.d	ENSGT00940000157269.a.b	ENSGT00940000155360.B.k	ENSGT00940000162479.a	ENSGT00940000157849.n.c	ENSGT00940000157872	ENSGT00940000156984.a.a	ENSGT00940000155814.m #26	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000157874.q.a	ENSGT01090000260082.d.a.b.o.a	ENSGT00940000155107.b.a	ENSGT00940000155063.a.b	ENSGT00940000157128	ENSGT00950000183030	ENSGT00940000165996	ENSGT01030000235083	ENSGT00730000111163	ENSGT00940000159160	ENSGT00550000075118.k	ENSGT00390000009001	ENSGT00940000156552.c.b	ENSGT00990000203779
Tetraodontidae	ANCESTRAL SPECIES	22	ENSGT00940000156984.a.a	ENSGT00940000157872	ENSGT00940000157849.n.c	ENSGT00940000162479.a	ENSGT00940000155360.B.k	ENSGT00940000157269.a.b	ENSGT00940000164275.f.d	ENSGT00940000165242.d	ENSGT00530000063669.b.b	ENSGT00390000002403	ENSGT00950000183302	ENSGT00940000158367	ENSGT00940000161679.b	ENSGT00940000154443.e	ENSGT00940000159196	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000157874.q.a	ENSGT01090000260082.d.a.b.o.a	ENSGT00940000155107.b.a	ENSGT00940000155063.a.b	ENSGT00940000157128	ENSGT00950000183030	ENSGT00730000111163	ENSGT00940000159160	ENSGT00550000075118.k	ENSGT00940000156552.c.b	ENSGT00530000063873.A	ENSGT01030000234607.A.b	ENSGT00530000063410.b	ENSGT00940000164110
Fugu	MODERN SPECIES	20	FGF14 (ENSTRUG00000030093)	tubgcp3 (ENSTRUG00000017326)	atp11a (ENSTRUG00000017330)	SOX1 (ENSTRUG00000021237)	arhgef7b (ENSTRUG00000017333)	ENSTRUG00000017337	ENSTRUG00000028094	ENSTRUG00000017357	ENSTRUG00000017359	fam184aa (ENSTRUG00000017364)	ENSTRUG00000021847	ENSTRUG00000028934	ENSTRUG00000003573	ENSTRUG00000003862	ENSTRUG00000021682	cdadc1 (ENSTRUG00000004808) #22	cab39l (ENSTRUG00000005008) #23	MCF2L (ENSTRUG00000005283)	RDX (ENSTRUG00000005857)	ENSTRUG00000022519	MAP4K4 (ENSTRUG00000006376)	chst10 (ENSTRUG00000007251)	rpl31 (ENSTRUG00000007359)	ENSTRUG00000030462	cpb2 (ENSTRUG00000007671)	alg11 (ENSTRUG00000008200)	raph1b (ENSTRUG00000008306)	cd28 (ENSTRUG00000008513)	ENSTRUG00000019725	mdh1b (ENSTRUG00000008621)	ENSTRUG00000021914
Tetraodon	MODERN SPECIES	18	GPR180 (ENSTNIG00000014502)	ENSTNIG00000014503	ENSTNIG00000014504	tubgcp3 (ENSTNIG00000014505)	ATP11A (ENSTNIG00000014506)	SOX1 (ENSTNIG00000012196)	arhgef7b (ENSTNIG00000014507)	ENSTNIG00000014508	ENSTNIG00000014509	ENSTNIG00000014510	fam184aa (ENSTNIG00000014511)	ENSTNIG00000014512	SLC5A3 (ENSTNIG00000014513)	ENSTNIG00000014514	ENSTNIG00000001981	cdadc1 (ENSTNIG00000014515) #22	cab39l (ENSTNIG00000014516) #23	MCF2L (ENSTNIG00000014517)	RDX (ENSTNIG00000014518)	ENSTNIG00000014519	ENSTNIG00000014520	chst10 (ENSTNIG00000014521)	rpl31 (ENSTNIG00000014522)	zc3h13 (ENSTNIG00000014523)	cpb2 (ENSTNIG00000014524)	alg11 (ENSTNIG00000014525)	raph1b (ENSTNIG00000014526)	ENSTNIG00000014527	mdh1b (ENSTNIG00000000378)	retreg2 (ENSTNIG00000014528)	ENSTNIG00000014529
Eupecaria_A	ANCESTRAL SPECIES	23	ENSGT00390000007055	ENSGT00940000154348.c.b.a.b.b	ENSGT00940000159848	ENSGT00940000166946	ENSGT00940000153514.b.m.b	ENSGT00390000018553	ENSGT00940000164275.f.c	ENSGT00940000164275.f.d	ENSGT00940000157269.a.b	ENSGT00940000155360.B.k	ENSGT00940000162479.a	ENSGT00940000157849.n.c	ENSGT00940000157872	ENSGT00940000156984.a.a	ENSGT00940000155814.m #26	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000157874.q.a	ENSGT01090000260082.d.a.b.o.a	ENSGT00940000155107.b.a	ENSGT00940000155063.a.b	ENSGT00940000157128	ENSGT00950000183030	ENSGT00730000111163	ENSGT00940000165996	ENSGT01030000235083	ENSGT00940000159160	ENSGT00550000075118.k	ENSGT00390000009001	ENSGT00940000156552.c.b	ENSGT00990000203779
Ballan wrasse	MODERN SPECIES	633											SOX1 (ENSLBEG00000020021)	ATP11A (ENSLBEG00000020048)	tubgcp3 (ENSLBEG00000020125)	FGF14 (ENSLBEG00000020198)	rcbtb1 (ENSLBEG00000020250) #26	cdadc1 (ENSLBEG00000020410) #22	cab39l (ENSLBEG00000020443) #23
Eupecaria_B	ANCESTRAL SPECIES	23	ENSGT00390000007055	ENSGT00940000154348.c.b.a.b.b	ENSGT00940000159848	ENSGT00940000166946	ENSGT00940000153514.b.m.b	ENSGT00390000018553	ENSGT00940000164275.f.c	ENSGT00940000164275.f.d	ENSGT00940000157269.a.b	ENSGT00940000155360.B.k	ENSGT00940000162479.a	ENSGT00940000157849.n.c	ENSGT00940000157872	ENSGT00940000156984.a.a	ENSGT00940000155814.m #26	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000157874.q.a	ENSGT01090000260082.d.a.b.o.a	ENSGT00940000155107.b.a	ENSGT00940000155063.a.b	ENSGT00940000157128	ENSGT00950000183030	ENSGT00730000111163	ENSGT00940000165996	ENSGT01030000235083	ENSGT00940000159160	ENSGT00550000075118.k	ENSGT00390000009001	ENSGT00940000156552.c.b	ENSGT00990000203779
Eupecaria_C	ANCESTRAL SPECIES	27	ENSGT00390000007055	ENSGT00940000154348.c.b.a.b.b	ENSGT00940000159848	ENSGT00940000166946	ENSGT00940000153514.b.m.b	ENSGT00390000018553	ENSGT00940000164275.f.c	ENSGT00940000164275.f.d	ENSGT00940000157269.a.b	ENSGT00940000155360.B.k	ENSGT00940000162479.a	ENSGT00940000157849.n.c	ENSGT00940000157872	ENSGT00940000156984.a.a	ENSGT00940000155814.m #26	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000157874.q.a	ENSGT01090000260082.d.a.b.o.a	ENSGT00940000155107.b.a	ENSGT00940000155063.a.b	ENSGT00940000157128	ENSGT00950000183030	ENSGT00730000111163	ENSGT00940000159160	ENSGT00550000075118.k	ENSGT00390000009001	ENSGT00940000156552.c.b	ENSGT00990000203779	ENSGT01030000234607.A.b	ENSGT00530000063410.b
Gilthead seabream	MODERN SPECIES	16	ENSSAUG00010010414	ENSSAUG00010010439	ENSSAUG00010010441	ENSSAUG00010010442	ENSSAUG00010002801	crygm6 (ENSSAUG00010002812)	SATB2 (ENSSAUG00010002841)	ENSSAUG00010002968	ENSSAUG00010005038	arhgef7b (ENSSAUG00010005047)	SOX1 (ENSSAUG00010007362)	ATP11A (ENSSAUG00010007402)	tubgcp3 (ENSSAUG00010010123)	FGF14 (ENSSAUG00010010139)	rcbtb1 (ENSSAUG00010010146) #26	cdadc1 (ENSSAUG00010010438) #22	cab39l (ENSSAUG00010010440) #23	MCF2L (ENSSAUG00010010458)	ENSSAUG00010010686	ENSSAUG00010013896	MAP4K4 (ENSSAUG00010013987)	rpl31 (ENSSAUG00010015646)	zc3h13 (ENSSAUG00010015648)	cpb2 (ENSSAUG00010015649)	alg11 (ENSSAUG00010015656)	spp2 (ENSSAUG00010015659)	raph1b (ENSSAUG00010015668)	ENSSAUG00010015850	ENSSAUG00010015853	mdh1b (ENSSAUG00010015856)	retreg2 (ENSSAUG00010015858)
Perciformes	ANCESTRAL SPECIES	24	ENSGT00390000007055	ENSGT00940000154348.c.b.a.b.b	ENSGT00940000159848	ENSGT00940000166946	ENSGT00940000153514.b.m.b	ENSGT00390000018553	ENSGT00940000164275.f.c	ENSGT00940000164275.f.d	ENSGT00940000157269.a.b	ENSGT00940000155360.B.k	ENSGT00940000162479.a	ENSGT00940000157849.n.c	ENSGT00940000157872	ENSGT00940000156984.a.a	ENSGT00940000155814.m #26	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000157874.q.a	ENSGT01090000260082.d.a.b.o.a	ENSGT00940000155107.b.a	ENSGT00940000155063.a.b	ENSGT00940000157128	ENSGT00950000183030	ENSGT00730000111163	ENSGT00940000165996	ENSGT01030000235083	ENSGT00940000159160	ENSGT00550000075118.k	ENSGT00390000009001	ENSGT00940000156552.c.b	ENSGT00990000203779
Cottioidei	ANCESTRAL SPECIES	24	ENSGT00390000007055	ENSGT00940000154348.c.b.a.b.b	ENSGT00940000159848	ENSGT00940000166946	ENSGT00940000153514.b.m.b	ENSGT00390000018553	ENSGT00940000164275.f.c	ENSGT00940000164275.f.d	ENSGT00940000157269.a.b	ENSGT00940000155360.B.k	ENSGT00940000162479.a	ENSGT00940000157849.n.c	ENSGT00940000157872	ENSGT00940000156984.a.a	ENSGT00940000155814.m #26	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000157874.q.a	ENSGT01090000260082.d.a.b.o.a	ENSGT00940000155107.b.a	ENSGT00940000155063.a.b	ENSGT00940000157128	ENSGT00950000183030	ENSGT00940000165996	ENSGT01030000235083	ENSGT00730000111163	ENSGT00940000159160	ENSGT00550000075118.k	ENSGT00390000009001	ENSGT00940000156552.c.b	ENSGT00990000203779
Lumpfish	MODERN SPECIES	11	mbnl2 (ENSCLMG00005014677)	ENSCLMG00005014689	ENSCLMG00005014691	ENSCLMG00005014693	nrp2a (ENSCLMG00005014713)	abcb6a (ENSCLMG00005015690)	ENSCLMG00005017216	ENSCLMG00005017219	ENSCLMG00005017235	arhgef7b (ENSCLMG00005017440)	SOX1 (ENSCLMG00005019072)	ATP11A (ENSCLMG00005000052)	tubgcp3 (ENSCLMG00005000524)	ENSCLMG00005000536	rcbtb1 (ENSCLMG00005000540) #26	cdadc1 (ENSCLMG00005000549) #22	cab39l (ENSCLMG00005000599) #23	MCF2L (ENSCLMG00005000628)	ENSCLMG00005000777	RDX (ENSCLMG00005000795)	ENSCLMG00005002728	ENSCLMG00005002730	MAP4K4 (ENSCLMG00005002739)	chst10 (ENSCLMG00005004894)	rpl31 (ENSCLMG00005004896)	ENSCLMG00005004902	ENSCLMG00005004904	cpb2 (ENSCLMG00005004907)	alg11 (ENSCLMG00005004939)	spp2 (ENSCLMG00005004942)	raph1b (ENSCLMG00005004947)
Stickleback	MODERN SPECIES		kpnb3 (ENSGACG00000014804)	atg13 (ENSGACG00000014810)	HARBI1 (ENSGACG00000014817)	zgc:110699 (ENSGACG00000014819)	ndufs1 (ENSGACG00000014821)	unc50 (ENSGACG00000014827)	ENSGACG00000014831	ENSGACG00000014833	ENSGACG00000014838	arhgef7b (ENSGACG00000014843)	SOX1 (ENSGACG00000014850)	ATP11A (ENSGACG00000014851)	tubgcp3 (ENSGACG00000014853)	ENSGACG00000014859	rcbtb1 (ENSGACG00000014869) #26	cdadc1 (ENSGACG00000014883) #22	cab39l (ENSGACG00000014886) #23	MCF2L (ENSGACG00000014889)	RDX (ENSGACG00000014895)	ENSGACG00000014898	pspc1 (ENSGACG00000014901)	lypd6 (ENSGACG00000014906)	mmadhca (ENSGACG00000014909)	rnd3a (ENSGACG00000014917)	ENSGACG00000014925	ZRANB3 (ENSGACG00000014926)	ENSGACG00000014931	ccnt2b (ENSGACG00000014932)	TMEM163 (ENSGACG00000014933)	mgat5 (ENSGACG00000014934)	clic5a (ENSGACG00000014937)
Perciformes_a	ANCESTRAL SPECIES	25	ENSGT00390000007055	ENSGT00940000154348.c.b.a.b.b	ENSGT00940000159848	ENSGT00940000166946	ENSGT00940000153514.b.m.b	ENSGT00390000018553	ENSGT00940000164275.f.c	ENSGT00940000164275.f.d	ENSGT00940000157269.a.b	ENSGT00940000155360.B.k	ENSGT00940000162479.a	ENSGT00940000157849.n.c	ENSGT00940000157872	ENSGT00940000156984.a.a	ENSGT00940000155814.m #26	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000157874.q.a	ENSGT01090000260082.d.a.b.o.a	ENSGT00940000155107.b.a	ENSGT00940000155063.a.b	ENSGT00940000157128	ENSGT00950000183030	ENSGT01030000235083	ENSGT00940000159160	ENSGT00550000075118.k	ENSGT00390000009001	ENSGT00940000156552.c.b	ENSGT00990000203779	ENSGT01030000234607.A.b	ENSGT00530000063410.b
Channel bull blenny	MODERN SPECIES	11	zgc:110699 (ENSCGOG00000008944)	ENSCGOG00000008946	ndufs1 (ENSCGOG00000008954)	unc50 (ENSCGOG00000009301)	ENSCGOG00000009315	ENSCGOG00000009326	ENSCGOG00000009342	ENSCGOG00000009350	ENSCGOG00000009396	arhgef7b (ENSCGOG00000009531)	SOX1 (ENSCGOG00000011013)	ATP11A (ENSCGOG00000011033)	tubgcp3 (ENSCGOG00000011368)	FGF14 (ENSCGOG00000011997)	rcbtb1 (ENSCGOG00000012009) #26	cdadc1 (ENSCGOG00000012332) #22	cab39l (ENSCGOG00000012336) #23	MCF2L (ENSCGOG00000012370)	RDX (ENSCGOG00000013573)	ENSCGOG00000017118	ENSCGOG00000017296	chst10 (ENSCGOG00000022724)	rpl31 (ENSCGOG00000022725)	cpb2 (ENSCGOG00000022743)	alg11 (ENSCGOG00000022747)	spp2 (ENSCGOG00000022749)	raph1b (ENSCGOG00000022764)	ENSCGOG00000022937	ENSCGOG00000022938	mdh1b (ENSCGOG00000022940)	retreg2 (ENSCGOG00000022949)
Pike perch	MODERN SPECIES	9	atg13 (ENSSLUG00000018288)	HARBI1 (ENSSLUG00000018331)	zgc:110699 (ENSSLUG00000018339)	ndufs1 (ENSSLUG00000018357)	unc50 (ENSSLUG00000018635)	ENSSLUG00000018647	ENSSLUG00000018666	arhgef7b (ENSSLUG00000018682)	ENSSLUG00000018742	SOX1 (ENSSLUG00000018748)	ENSSLUG00000018752	ATP11A (ENSSLUG00000018831)	tubgcp3 (ENSSLUG00000019071)	ENSSLUG00000019105	rcbtb1 (ENSSLUG00000019117) #26	cdadc1 (ENSSLUG00000019365) #22	cab39l (ENSSLUG00000019371) #23	MCF2L (ENSSLUG00000019427)	ENSSLUG00000020701	ENSSLUG00000021298	MAP4K4 (ENSSLUG00000021448)	chst10 (ENSSLUG00000023251)	rpl31 (ENSSLUG00000023256)	ENSSLUG00000023259	cpb2 (ENSSLUG00000023268)	alg11 (ENSSLUG00000023283)	spp2 (ENSSLUG00000023287)	raph1b (ENSSLUG00000023307)	ENSSLUG00000023414	ENSSLUG00000023416	ENSSLUG00000023420
Percomorphaceae_D	ANCESTRAL SPECIES	23	ENSGT00940000155502	ENSGT00390000007055	ENSGT00940000154348.c.b.a.b.b	ENSGT00940000159848	ENSGT00940000166946	ENSGT00940000153514.b.m.b	ENSGT00390000018553	ENSGT00940000164275.f.d	ENSGT00940000157269.a.b	ENSGT00940000155360.B.k	ENSGT00940000162479.a	ENSGT00940000157849.n.c	ENSGT00940000157872	ENSGT00940000156984.a.a	ENSGT00940000155814.m #26	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000157874.q.a	ENSGT01090000260082.d.a.b.o.a	ENSGT00940000155107.b.a	ENSGT00940000155063.a.b	ENSGT00940000157128	ENSGT00950000183030	ENSGT00940000165996	ENSGT01030000235083	ENSGT00730000111163	ENSGT00940000159160	ENSGT00550000075118.k	ENSGT00390000009001	ENSGT00940000156552.c.b	ENSGT00990000203779
Carangaria	ANCESTRAL SPECIES	23	ENSGT00940000155502	ENSGT00390000007055	ENSGT00940000154348.c.b.a.b.b	ENSGT00940000159848	ENSGT00940000166946	ENSGT00940000153514.b.m.b	ENSGT00390000018553	ENSGT00940000164275.f.d	ENSGT00940000157269.a.b	ENSGT00940000155360.B.k	ENSGT00940000162479.a	ENSGT00940000157849.n.c	ENSGT00940000157872	ENSGT00940000156984.a.a	ENSGT00940000155814.m #26	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000157874.q.a	ENSGT01090000260082.d.a.b.o.a	ENSGT00940000155107.b.a	ENSGT00940000155063.a.b	ENSGT00940000157128	ENSGT00950000183030	ENSGT00940000165996	ENSGT01030000235083	ENSGT00730000111163	ENSGT00940000159160	ENSGT00550000075118.k	ENSGT00390000009001	ENSGT00940000156552.c.b	ENSGT00990000203779
Carangaria_A	ANCESTRAL SPECIES	23	ENSGT00940000155502	ENSGT00390000007055	ENSGT00940000154348.c.b.a.b.b	ENSGT00940000159848	ENSGT00940000166946	ENSGT00940000153514.b.m.b	ENSGT00390000018553	ENSGT00940000164275.f.d	ENSGT00940000157269.a.b	ENSGT00940000155360.B.k	ENSGT00940000162479.a	ENSGT00940000157849.n.c	ENSGT00940000157872	ENSGT00940000156984.a.a	ENSGT00940000155814.m #26	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000157874.q.a	ENSGT01090000260082.d.a.b.o.a	ENSGT00940000155107.b.a	ENSGT00940000155063.a.b	ENSGT00940000157128	ENSGT00950000183030.j	ENSGT00940000165996	ENSGT01030000235083	ENSGT00730000111163	ENSGT00940000159160	ENSGT00550000075118.k	ENSGT00390000009001	ENSGT00940000156552.c.b	ENSGT00990000203779
Seriola	ANCESTRAL SPECIES	44	ENSGT00940000156712.a	ENSGT00940000155502	ENSGT00390000007055	ENSGT00940000159848	ENSGT00940000166946	ENSGT00940000153514.b.m.b	ENSGT00390000018553	ENSGT00940000164275.f.d	ENSGT00940000157269.a.b	ENSGT00940000155360.B.k	ENSGT00940000162479.a	ENSGT00940000157849.n.c	ENSGT00940000157872	ENSGT00940000156984.a.a	ENSGT00940000155814.m #26	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000157874.q.a	ENSGT01090000260082.d.a.b.o.a
Yellowtail amberjack	MODERN SPECIES	3005	SEMA5B (ENSSLDG00000002404)	kpnb3 (ENSSLDG00000002270)	atg13 (ENSSLDG00000002116)	creb3l1 (ENSSLDG00000002002)	zgc:110699 (ENSSLDG00000001933)	ndufs1 (ENSSLDG00000001862)	ENSSLDG00000001831	unc50 (ENSSLDG00000001793)	ENSSLDG00000001651	arhgef7b (ENSSLDG00000001565)	SOX1 (ENSSLDG00000001549)	ATP11A (ENSSLDG00000001419)	tubgcp3 (ENSSLDG00000001312)	ENSSLDG00000001271	rcbtb1 (ENSSLDG00000001219) #26	cdadc1 (ENSSLDG00000001205) #22	cab39l (ENSSLDG00000001167) #23	MCF2L (ENSSLDG00000001032)	ENSSLDG00000000938	ENSSLDG00000000901	sub1b (ENSSLDG00000000852)	ENSSLDG00000000834	zfr (ENSSLDG00000000762)	ENSSLDG00000000729
Greater amberjack	MODERN SPECIES	208											SOX1 (ENSSDUG00000021280)	ATP11A (ENSSDUG00000021251)	tubgcp3 (ENSSDUG00000021196)	ENSSDUG00000021186	rcbtb1 (ENSSDUG00000021158) #26	cdadc1 (ENSSDUG00000021144) #22	cab39l (ENSSDUG00000021125) #23	MCF2L (ENSSDUG00000021081)	RDX (ENSSDUG00000021029)
Barramundi perch	MODERN SPECIES	165	SEMA5B (ENSLCAG00010019680)	kpnb3 (ENSLCAG00010019658)	atg13 (ENSLCAG00010019633)	HARBI1 (ENSLCAG00010019629)	zgc:110699 (ENSLCAG00010019583)	ndufs1 (ENSLCAG00010019461)	unc50 (ENSLCAG00010019438)	ENSLCAG00010019436	ENSLCAG00010019392	arhgef7b (ENSLCAG00010018976)	SOX1 (ENSLCAG00010018822)	ATP11A (ENSLCAG00010017994)	tubgcp3 (ENSLCAG00010017896)	ENSLCAG00010017889	rcbtb1 (ENSLCAG00010017866) #26	cdadc1 (ENSLCAG00010017851) #22	cab39l (ENSLCAG00010017802) #23	MCF2L (ENSLCAG00010017427)	ENSLCAG00010016515	ENSLCAG00010016328
Pleuronectoidei	ANCESTRAL SPECIES	42								ENSGT00940000164275.f.c	ENSGT00940000157269.a.b	ENSGT00940000155360.B.k	ENSGT00940000162479.a	ENSGT00940000157849.n.c	ENSGT00940000157872	ENSGT00940000156984.a.a	ENSGT00940000155814.m #26	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000157874.q.a	ENSGT01090000260082.d.a.b.o.a	ENSGT00940000155107.b.a	ENSGT00940000155063.a.b	ENSGT00940000157128	ENSGT00950000183030	ENSGT00730000111163	ENSGT00940000159160	ENSGT00550000075118.k	ENSGT00390000009001	ENSGT00940000156552.c.b	ENSGT00990000203779	ENSGT01030000234607.A.b	ENSGT00530000063410.b
Turbot	MODERN SPECIES		ENSSMAG00000004009	ENSSMAG00000004036	ENSSMAG00000004253	ENSSMAG00000004263	ENSSMAG00000023417	ENSSMAG00000004288	ENSSMAG00000004291	ENSSMAG00000004318	ENSSMAG00000004428	arhgef7b (ENSSMAG00000004589)	ENSSMAG00000004680	ENSSMAG00000004696	tubgcp3 (ENSSMAG00000004863)	ENSSMAG00000004940	rcbtb1 (ENSSMAG00000004983) #26	cdadc1 (ENSSMAG00000005048) #22	cab39l (ENSSMAG00000005071) #23	ENSSMAG00000005108	ENSSMAG00000005339	ENSSMAG00000031623	ENSSMAG00000007176	ENSSMAG00000025555	ENSSMAG00000007130	zc3h13 (ENSSMAG00000007110)	cpb2 (ENSSMAG00000007082)	alg11 (ENSSMAG00000007070)	spp2 (ENSSMAG00000028508)	raph1b (ENSSMAG00000007021)	ENSSMAG00000006998	ENSSMAG00000006986	mdh1b (ENSSMAG00000006973)
Tongue sole	MODERN SPECIES	5	atg13 (ENSCSEG00000002249)	ENSCSEG00000002255	SLC19A1 (ENSCSEG00000002256)	ENSCSEG00000002258	ENSCSEG00000002262	ATP11A (ENSCSEG00000002286)	tubgcp3 (ENSCSEG00000002300)	fam184aa (ENSCSEG00000002310)	PLN (ENSCSEG00000002332)	ENSCSEG00000002333	ENSCSEG00000003346	SLC5A3 (ENSCSEG00000003349)	ddx3xa (ENSCSEG00000003352)	TGDS (ENSCSEG00000003361)	GPR180 (ENSCSEG00000003364)	cdadc1 (ENSCSEG00000003370) #22	cab39l (ENSCSEG00000003374) #23	MCF2L (ENSCSEG00000003384)	arpc2 (ENSCSEG00000003404)	ENSCSEG00000003406	ENSCSEG00000003409	ENSCSEG00000003414	bzw1a (ENSCSEG00000003418)	ENSCSEG00000003428	ENSCSEG00000003432	KYNU (ENSCSEG00000003441)	OSBPL11 (ENSCSEG00000003461)	ENSCSEG00000003472	LYPD1 (ENSCSEG00000003476)	actr3 (ENSCSEG00000003485)	pou3f3b (ENSCSEG00000003499)
Anabantaria	ANCESTRAL SPECIES	23	ENSGT00940000155502	ENSGT00390000007055	ENSGT00940000154348.c.b.a.b.b	ENSGT00940000159848	ENSGT00940000166946	ENSGT00940000153514.b.m.b	ENSGT00390000018553	ENSGT00940000164275.f.d	ENSGT00940000157269.a.b	ENSGT00940000155360.B.k	ENSGT00940000162479.a	ENSGT00940000157849.n.c	ENSGT00940000157872	ENSGT00940000156984.a.a	ENSGT00940000155814.m #26	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000157874.q.a	ENSGT01090000260082.d.a.b.o.a	ENSGT00940000155107.b.a	ENSGT00940000155063.a.b	ENSGT00940000157128	ENSGT00950000183030	ENSGT00730000111163	ENSGT00940000159160	ENSGT00550000075118.k	ENSGT00390000009001	ENSGT00940000156552.c.b	ENSGT00990000203779	ENSGT01030000234607.A.b	ENSGT00530000063410.b
Zig-zag eel	MODERN SPECIES	11	ENSMAMG00000021533	ENSMAMG00000021575	ENSMAMG00000021593	ENSMAMG00000021607	ENSMAMG00000021611	ENSMAMG00000021618	ENSMAMG00000021632	ENSMAMG00000021635	ENSMAMG00000021642	arhgef7b (ENSMAMG00000021649)	ENSMAMG00000021660	ENSMAMG00000021662	tubgcp3 (ENSMAMG00000021681)	ENSMAMG00000021696	rcbtb1 (ENSMAMG00000021704) #26	cdadc1 (ENSMAMG00000021707) #22	cab39l (ENSMAMG00000021730) #23	ENSMAMG00000021735	ENSMAMG00000021762	ENSMAMG00000021787	ENSMAMG00000021790	ENSMAMG00000021794	ENSMAMG00000021889	ENSMAMG00000021892	ENSMAMG00000021893	ENSMAMG00000021899	ENSMAMG00000021906	ENSMAMG00000021907	ENSMAMG00000021908	ENSMAMG00000021910	ENSMAMG00000021912
Anabantoidei	ANCESTRAL SPECIES	23	ENSGT00940000164538	ENSGT00940000158202	ENSGT00940000155390	ENSGT00940000155041	ENSGT00940000166048.a.b	ENSGT00940000156916	ENSGT00940000154633.id.b	ENSGT00940000157358	ENSGT00940000157269.a.b	ENSGT00940000155360.B.k	ENSGT00940000162479.a	ENSGT00940000157849.n.c	ENSGT00940000157872	ENSGT00940000156984.a.a	ENSGT00940000155814.m #26	ENSGT00940000153676.b #22	ENSGT00390000004360.a.b.a.a.b #23	ENSGT00940000157874.q.a	ENSGT01090000260082.d.a.b.o.a	ENSGT00940000155107.b.a	ENSGT00940000155063.a.b	ENSGT00940000157128	ENSGT00950000183030	ENSGT00730000111163	ENSGT00940000159160	ENSGT00550000075118.k	ENSGT00390000009001	ENSGT00940000156552.c.b	ENSGT00990000203779	ENSGT01030000234607.A.b	ENSGT00530000063410.b
Climbing perch	MODERN SPECIES	11	ENSATEG00000005457	ENSATEG00000005302	ENSATEG00000005263	ENSATEG00000005051	ENSATEG00000005037	ENSATEG00000005000	ENSATEG00000004989	ENSATEG00000004878	ENSATEG00000004855	arhgef7b (ENSATEG00000004776)	ENSATEG00000004770	ENSATEG00000004602	tubgcp3 (ENSATEG00000004470)	ENSATEG00000004442	rcbtb1 (ENSATEG00000004379) #26	cdadc1 (ENSATEG00000026372) #22	cab39l (ENSATEG00000004327) #23	ENSATEG00000004221	ENSATEG00000004149	ENSATEG00000004134	ENSATEG00000003973	ENSATEG00000029382	ENSATEG00000003942	zc3h13 (ENSATEG00000003937)	cpb2 (ENSATEG00000003852)	alg11 (ENSATEG00000003821)	spp2 (ENSATEG00000003777)	raph1b (ENSATEG00000003709)	ENSATEG00000003664	ENSATEG00000003650	mdh1b (ENSATEG00000003523)
Siamese fighting fish	MODERN SPECIES	10	nudt15 (ENSBSLG00000003533) #12	ENSBSLG00000003532	TRAK2 (ENSBSLG00000003530)	STRADB (ENSBSLG00000003529)	NBEAL1 (ENSBSLG00000003524)	ENSBSLG00000003521	ENSBSLG00000003520	pspc1 (ENSBSLG00000003519)	ENSBSLG00000003518	arhgef7b (ENSBSLG00000003511)	SOX1 (ENSBSLG00000003504)	ENSBSLG00000003490	tubgcp3 (ENSBSLG00000003486)	FGF14 (ENSBSLG00000003484)	rcbtb1 (ENSBSLG00000003483) #26	cdadc1 (ENSBSLG00000003482) #22	cab39l (ENSBSLG00000003481) #23	MCF2L (ENSBSLG00000003479)	ENSBSLG00000003477	ENSBSLG00000003476	RDX (ENSBSLG00000003472)	ENSBSLG00000003461	MAP4K4 (ENSBSLG00000003402)	chst10 (ENSBSLG00000003312)	chst10 (ENSBSLG00000003307)	rpl31 (ENSBSLG00000003300)	zc3h13 (ENSBSLG00000003293)	alg11 (ENSBSLG00000003291)	spp2 (ENSBSLG00000003287)	ENSBSLG00000003260	ENSBSLG00000003247
Cod	MODERN SPECIES	3	med16 (ENSGMOG00000002490)	ENSGMOG00000032570	ENSGMOG00000029662	ENSGMOG00000027619	stil (ENSGMOG00000032232)	serpinc1 (ENSGMOG00000000957)	ENSGMOG00000031880	s1pr1 (ENSGMOG00000020489)	dph5 (ENSGMOG00000013311)	slc30a7 (ENSGMOG00000013296)	CDC14A (ENSGMOG00000013277)	rtca (ENSGMOG00000013264)	dbt (ENSGMOG00000013254)	lrrc39 (ENSGMOG00000013245)	trmt13 (ENSGMOG00000028056)	ENSGMOG00000032607 #22
Spotted gar	MODERN SPECIES	655	cmss1 (ENSLOCG00000009391)	ENSLOCG00000009366	il1rapl1a (ENSLOCG00000009346)	nr0b1 (ENSLOCG00000009335)	TASL (ENSLOCG00000017801)	ENSLOCG00000009310	rnaseh2b (ENSLOCG00000009296)	dleu7 (ENSLOCG00000009287)	KCNRG (ENSLOCG00000009277) #35	trim13 (ENSLOCG00000009265) #34	spryd7b (ENSLOCG00000009258) #33	kpna3 (ENSLOCG00000009241) #29	arl11 (ENSLOCG00000017800)	rcbtb1 (ENSLOCG00000009231) #26	ENSLOCG00000009220 #25	cdadc1 (ENSLOCG00000009213) #22	cab39l (ENSLOCG00000009202) #23	MCF2L (ENSLOCG00000009166)	tubgcp3 (ENSLOCG00000009147)	ATP11A (ENSLOCG00000009109)	sox1b (ENSLOCG00000017799)	arhgef7a (ENSLOCG00000009085)	ankrd10a (ENSLOCG00000009072)	ing1 (ENSLOCG00000009063)	CARS2 (ENSLOCG00000009049)	naxd (ENSLOCG00000009033)	rab20 (ENSLOCG00000009026)	COL4A2 (ENSLOCG00000008986)	COL4A1 (ENSLOCG00000008957)	irs2a (ENSLOCG00000017798)	MYO16 (ENSLOCG00000008929)
Reedfish	MODERN SPECIES	12	COL4A1 (ENSECRG00000005394)	naxd (ENSECRG00000005349)	rab20 (ENSECRG00000005344)	ENSECRG00000005310	ankrd10a (ENSECRG00000005279)	ENSECRG00000005270	ing1 (ENSECRG00000005261)	ENSECRG00000005248	arhgef7a (ENSECRG00000005180)	sox1b (ENSECRG00000005151)	ENSECRG00000005138	tubgcp3 (ENSECRG00000005116)	cab39l (ENSECRG00000005083) #23	MCF2L (ENSECRG00000004950)	ATP11A (ENSECRG00000004882)	cdadc1 (ENSECRG00000004860) #22
Elephant shark	MODERN SPECIES	1505												rb1 (ENSCMIG00000004903) #16	RCBTB2 (ENSCMIG00000005213) #18	FNDC3A (ENSCMIG00000005415) #20	MLNR (ENSCMIG00000005802) #21	cdadc1 (ENSCMIG00000005804) #22	cab39l (ENSCMIG00000005809) #23	ENSCMIG00000005816	TPP2 (ENSCMIG00000005842)	ENSCMIG00000005894	METTL21C (ENSCMIG00000005908)	zgc:172121 (ENSCMIG00000005913)	BIVM (ENSCMIG00000005919)	poglut2 (ENSCMIG00000005924)	ENSCMIG00000005931	ENSCMIG00000005934	slc10a2 (ENSCMIG00000005941)	ENSCMIG00000005955	ENSCMIG00000005973	ENSCMIG00000005975	ENSCMIG00000005984
Cyclostomata	ANCESTRAL SPECIES																	ENSGT00940000153676.b #22
Hagfish	MODERN SPECIES	1396									ENSEBUG00000005552	ENSEBUG00000014650	stambpa (ENSEBUG00000016506)	ENSEBUG00000009920 #24	ENSEBUG00000016266	ENSEBUG00000008777	ENSEBUG00000011891 ##25	ENSEBUG00000004749 #22	shox (ENSEBUG00000004929)	ENSEBUG00000007474
Bilateria	ANCESTRAL SPECIES																	ENSGT00940000153676.a ##22
Ecdysozoa	ANCESTRAL SPECIES																	ENSGT00940000153676.a ##22
Fruitfly	MODERN SPECIES	18	CG42674 (FBgn0261556)	Ssk (FBgn0036945)	CG42833 (FBgn0262022)	obst-F (FBgn0036947)	CG7298 (FBgn0036948)	CG7290 (FBgn0036949)	CG6996 (FBgn0036950)	CG7017 (FBgn0036951)	CG6933 (FBgn0036952)	CG17145 (FBgn0036953)	CG17147 (FBgn0260393)	Su(var)3-3 (FBgn0260397)	CG13813 (FBgn0036956)	CG17233 (FBgn0036958)	Clc (FBgn0024814)	CG6951 (FBgn0036959) ##22	rdgC (FBgn0265959)	CG32228 (FBgn0052228)	gogo (FBgn0052227)	CG17122 (FBgn0036962)	FRG1 (FBgn0036964)	Pex23 (FBgn0288469)	SCCRO4 (FBgn0036967)	CG32225 (FBgn0052225)	polo (FBgn0003124)	alphaSnap (FBgn0250791)	Spn77Ba (FBgn0262057)	Spn77Bb (FBgn0036969)	Spn77Bc (FBgn0036970)	Rbbp5 (FBgn0036973)	eRF1 (FBgn0036974)
Caenorhabditis elegans	MODERN SPECIES	2	ZK637.14 (WBGene00014031)	lnkn-1 (WBGene00014023)	ZK637.4 (WBGene00014024)	asna-1 (WBGene00014025)	lin-9 (WBGene00002998)	unc-32 (WBGene00006768)	tpk-1 (WBGene00014027)	trxr-2 (WBGene00014028)	cdc-25.3 (WBGene00000388)	ZK637.15 (WBGene00014032)	glb-1 (WBGene00014030)	ZK637.12 (WBGene00014029)	arrd-15 (WBGene00014033)	seb-2 (WBGene00014035)	ZK643.5 (WBGene00014036)	ZK643.2 (WBGene00014034) ##22	ZK643.6 (WBGene00014037)	grl-25 (WBGene00001734)	bud-13 (WBGene00011142)	rpap-2 (WBGene00011143)	eif-3.D (WBGene00001227)	R08D7.4 (WBGene00011144)	R08D7.5 (WBGene00011145)	pde-2 (WBGene00011146)	R08D7.7 (WBGene00011147)	skat-1 (WBGene00010307)	F59B2.3 (WBGene00010308)	rpn-6.2 (WBGene00010309)	F59B2.15 (WBGene00185006)	zif-1 (WBGene00006977)	rab-6.1 (WBGene00004269)
Chordata	ANCESTRAL SPECIES																	ENSGT00940000153676.a ##22
Ciona	ANCESTRAL SPECIES	255															ENSGT00390000008853	ENSGT00940000153676.a ##22	ENSGT00940000168425.a	ENSGT00390000000993
Ciona savignyi	MODERN SPECIES	240	ENSCSAVG00000008564	ENSCSAVG00000008563	ENSCSAVG00000008555	ENSCSAVG00000008554	ENSCSAVG00000008551	ENSCSAVG00000008537	ENSCSAVG00000008394	ENSCSAVG00000008390	ENSCSAVG00000008388	ENSCSAVG00000008386	ENSCSAVG00000008385	ENSCSAVG00000008379	ENSCSAVG00000008374	ENSCSAVG00000008373	ENSCSAVG00000008363	ENSCSAVG00000008355 ##22	ENSCSAVG00000008353	ENSCSAVG00000008351	ENSCSAVG00000008347	ENSCSAVG00000008346	ENSCSAVG00000008345	ENSCSAVG00000008342	ENSCSAVG00000008267	ENSCSAVG00000008241	ENSCSAVG00000008239	ENSCSAVG00000008231	ENSCSAVG00000008223	ENSCSAVG00000008222	ENSCSAVG00000008217	ENSCSAVG00000008214	ENSCSAVG00000008211
Ciona intestinalis	MODERN SPECIES	5	ENSCING00000003066	ENSCING00000003074	ENSCING00000003075	ENSCING00000014729	ENSCING00000003076	ENSCING00000020503	ENSCING00000014723	ENSCING00000018313	ENSCING00000003085	ENSCING00000003088	ENSCING00000003125	meta4 (ENSCING00000003128)	ENSCING00000003118	ENSCING00000017993	ENSCING00000018601	ENSCING00000014710 ##22	phox2 (ENSCING00000023735)	ENSCING00000014711	ENSCING00000023530	ENSCING00000003109	ENSCING00000003103	ENSCING00000003100	ENSCING00000003098	ENSCING00000018291	ENSCING00000003094	ENSCING00000005130	ENSCING00000023439	ENSCING00000014695	ENSCING00000024524	ENSCING00000003135	ENSCING00000021478
Vertebrata	ANCESTRAL SPECIES																	ENSGT00940000153676.a ##22
Cyclostomata	ANCESTRAL SPECIES																	ENSGT00940000153676.a ##22
Hagfish	MODERN SPECIES	54												uap1l1 (ENSEBUG00000002598)	ENSEBUG00000007387	ENSEBUG00000003724	ENSEBUG00000011340	dctd (ENSEBUG00000007299) ##22	ndor1 (ENSEBUG00000006362)	ENSEBUG00000009729	ENSEBUG00000004116	ENSEBUG00000014711	ENSEBUG00000008816	ENSEBUG00000013281	ENSEBUG00000012726	ENSEBUG00000010630	ENSEBUG00000013708	ENSEBUG00000016078	ENSEBUG00000015647	ENSEBUG00000013363	ENSEBUG00000015084	ENSEBUG00000011596	ENSEBUG00000002422
Gnathostomata	ANCESTRAL SPECIES	77																ENSGT00940000153676.a ##22	ENSGT01030000234566.e.b.a.a	ENSGT00950000183045.C	ENSGT00940000153230.A	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000158368	ENSGT00940000154593.a.b	ENSGT00390000009873	ENSGT00940000158356	ENSGT00940000160772	ENSGT00390000009191
Elephant shark	MODERN SPECIES	1528																dctd (ENSCMIG00000002345) ##22	ENSCMIG00000002357	TENM3 (ENSCMIG00000002539)	aga (ENSCMIG00000003129)	neil3 (ENSCMIG00000003137)	vegfc (ENSCMIG00000003140)	spcs3 (ENSCMIG00000003145)	ASB5 (ENSCMIG00000003152)	ENSCMIG00000003160	wdr17 (ENSCMIG00000003311)	gpm6aa (ENSCMIG00000003614)	glra3 (ENSCMIG00000003633)	hpgd (ENSCMIG00000003712)	ENSCMIG00000003714	CEP44 (ENSCMIG00000003718)	fbxo8 (ENSCMIG00000003723)
Euteleostomi	ANCESTRAL SPECIES		ENSGT00940000160388	ENSGT00940000154508.a.a	ENSGT00390000015511	ENSGT00390000003901	ENSGT00940000153232.a.b	ENSGT00940000159063	ENSGT00940000158457	ENSGT00520000055589.d	ENSGT00940000163251.b	ENSGT00390000006550	ENSGT00390000015545	ENSGT00940000167021	ENSGT00940000158194	ENSGT00940000158376	ENSGT00410000025556.a.a.a.b	ENSGT00940000153676.a ##22	ENSGT01030000234566.e.b.a.a	ENSGT00950000183045.C	ENSGT00940000153230.A	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT01080000257376.a.b.a.a	ENSGT00940000158368	ENSGT00940000154593.a.b	ENSGT00390000009873	ENSGT00940000158356	ENSGT00940000160772
Sarcopterygii	ANCESTRAL SPECIES	60	ENSGT00940000160388	ENSGT00940000154508.a.a	ENSGT00390000015511	ENSGT00390000003901	ENSGT00940000153232.a.b	ENSGT00940000159063	ENSGT00940000158457	ENSGT00520000055589.d	ENSGT00390000006550	ENSGT00390000015545	ENSGT00940000167021	ENSGT00940000158194	ENSGT00940000158376	ENSGT00940000161922	ENSGT00410000025556.a.a.a.b	ENSGT00940000153676.a ##22	ENSGT01030000234566.e.b.a.a	ENSGT01030000234566.f
Coelacanth	MODERN SPECIES	266					STOX2 (ENSLACG00000002298)	ENSLACG00000008761	ENSLACG00000009311	ENSLACG00000009998	TRAPPC11 (ENSLACG00000010124)	RWDD4 (ENSLACG00000011062)	ENSLACG00000011736	ING2 (ENSLACG00000012661)	CDKN2AIP (ENSLACG00000013042)	cldn26 (ENSLACG00000013420)	WWC2 (ENSLACG00000013542)	DCTD (ENSLACG00000015221) ##22	ENSLACG00000015225	ENSLACG00000016037	tenm3 (ENSLACG00000017160)	ENSLACG00000018317
Tetrapoda	ANCESTRAL SPECIES	3	ENSGT00940000160388	ENSGT00940000154508.a.a	ENSGT00390000015511	ENSGT00390000003901	ENSGT00940000153232.a.b	ENSGT00940000159063	ENSGT00940000158457	ENSGT00520000055589.d	ENSGT00390000006550	ENSGT00390000015545	ENSGT00940000167021	ENSGT00940000158194	ENSGT00940000158376	ENSGT00940000161922.i.b	ENSGT00410000025556.a.a.a.b	ENSGT00940000153676.a ##22	ENSGT01030000234566.e.b.a.a	ENSGT00950000183045.C	ENSGT00940000153230.A	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000166667	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT01080000257376.a.b.a.a	ENSGT00940000158368	ENSGT00940000154593.a.b	ENSGT00390000009873	ENSGT00940000158356
Anura	ANCESTRAL SPECIES	2	ENSGT00940000154508.a.a	ENSGT00390000015511	ENSGT00940000153232.b	ENSGT00390000003901	ENSGT00940000153232.a.b	ENSGT00940000159063	ENSGT00940000158457	ENSGT00520000055589.d	ENSGT00390000006550	ENSGT00390000015545	ENSGT00940000167021	ENSGT00940000158194	ENSGT00940000158376	ENSGT00940000161922.i.b	ENSGT00410000025556.a.a.a.b	ENSGT00940000153676.a ##22	ENSGT01030000234566.e.b.a.a	ENSGT00950000183045.C	ENSGT00940000153230.A	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT01080000257376.a.b.a.a	ENSGT00940000158368	ENSGT00940000154593.a.b	ENSGT00390000009873	ENSGT00940000158356	ENSGT00940000160772
Frog	MODERN SPECIES		casp3.2 (ENSXETG00000045371)	enpp6 (ENSXETG00000001536)	irf2 (ENSXETG00000045571)	stox2 (ENSXETG00000001533)	ENSXETG00000042755	ENSXETG00000048300	trappc11 (ENSXETG00000019069)	rwdd4 (ENSXETG00000019065)	ENSXETG00000039273	ing2 (ENSXETG00000019052)	ENSXETG00000041521	cdkn2aip (ENSXETG00000019049)	ENSXETG00000034028	ENSXETG00000044938	wwc2 (ENSXETG00000025753)	dctd (ENSXETG00000019042) ##22	tenm3 (ENSXETG00000031472)	ENSXETG00000048545	aga (ENSXETG00000009427)	neil3 (ENSXETG00000030606)	ENSXETG00000043475	vegfc (ENSXETG00000002447)	ENSXETG00000043390	spcs3 (ENSXETG00000036663)	asb5 (ENSXETG00000040581)	spata4 (ENSXETG00000038630)	wdr17 (ENSXETG00000002453)	gpm6a (ENSXETG00000036810)	ENSXETG00000041411	glra3 (ENSXETG00000002460)	cep44 (ENSXETG00000032956)
Leishan spiny toad	MODERN SPECIES		ENPP6 (ENSLLEG00000024207)	ENSLLEG00000024153	STOX2 (ENSLLEG00000024013)	ENSLLEG00000023953	ENSLLEG00000023910	TRAPPC11 (ENSLLEG00000023088)	RWDD4 (ENSLLEG00000022920)	ENSLLEG00000022848	ENSLLEG00000021774	ING2 (ENSLLEG00000021707)	CDKN2AIP (ENSLLEG00000021640)	ENSLLEG00000021624	ENSLLEG00000021589	ENSLLEG00000021452	WWC2 (ENSLLEG00000020987)	DCTD (ENSLLEG00000020780) ##22	ENSLLEG00000020690	ENSLLEG00000019325	ENSLLEG00000019056	ENSLLEG00000019020	ENSLLEG00000018938	ENSLLEG00000018922	ENSLLEG00000018893	ENSLLEG00000018874	ENSLLEG00000018846	AGA (ENSLLEG00000018494)	NEIL3 (ENSLLEG00000018371)	VEGFC (ENSLLEG00000018299)	ENSLLEG00000018286	SPCS3 (ENSLLEG00000018192)	ASB5 (ENSLLEG00000017956)
Amniota	ANCESTRAL SPECIES	2	ENSGT00390000015511	ENSGT00390000003901	ENSGT00940000153232.a.b	ENSGT01050000246068	ENSGT00940000159063	ENSGT00940000158457	ENSGT00520000055589.d	ENSGT00390000006550	ENSGT00390000015545	ENSGT00940000167021	ENSGT00940000158194	ENSGT00940000158376	ENSGT00940000162234	ENSGT00940000161922.i.b	ENSGT00410000025556.a.a.a.b	ENSGT00940000153676.a ##22	ENSGT00910000148572	ENSGT01030000234566.e.b.a.a	ENSGT00950000183045.C	ENSGT00940000153230.A	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000166667	ENSGT00940000158602	ENSGT00940000167698	ENSGT00390000006915.d	ENSGT00940000158368	ENSGT00940000154593.a.b	ENSGT00390000009873
Sauria	ANCESTRAL SPECIES	6	ENSGT00390000015511	ENSGT00390000003901	ENSGT00940000153232.a.b	ENSGT01050000246068	ENSGT00940000159063	ENSGT00940000158457	ENSGT00520000055589.d	ENSGT00390000006550	ENSGT00390000015545	ENSGT00940000167021	ENSGT00940000158194	ENSGT00940000158376	ENSGT00940000162234	ENSGT00940000161922.i.b	ENSGT00410000025556.a.a.a.b	ENSGT00940000153676.a ##22	ENSGT00910000148572	ENSGT01030000234566.e.b.a.a	ENSGT00950000183045.C	ENSGT00940000153230.A	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00940000167698	ENSGT00390000006915.d	ENSGT00940000158368	ENSGT00940000154593.a.b	ENSGT00390000009873	ENSGT00940000158356
Lepidosauria	ANCESTRAL SPECIES	9	ENSGT00940000160388	ENSGT00940000154508.a.a	ENSGT00390000015511	ENSGT00390000003901	ENSGT00940000153232.a.b	ENSGT00940000159063	ENSGT00940000158457	ENSGT00520000055589.d	ENSGT00390000006550	ENSGT00390000015545	ENSGT00940000167021	ENSGT00940000158194	ENSGT00940000158376	ENSGT00940000161922.i.b	ENSGT00410000025556.a.a.a.b	ENSGT00940000153676.a ##22	ENSGT00910000148572	ENSGT01030000234566.e.b.a.a	ENSGT00950000183045.C	ENSGT00940000153230.A	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000158368	ENSGT00940000154593.a.b	ENSGT00390000009873	ENSGT00940000158356	ENSGT00940000160772
tuatara	DUPLICATION
tuatara	MODERN SPECIES	167															ENSSPUG00000006208 ##22	ENSSPUG00000006160 ##22	TENM3 (ENSSPUG00000006106)	ENSSPUG00000006088
tuatara	MODERN SPECIES	167																ENSSPUG00000006208 ##22	ENSSPUG00000006160 ##22	TENM3 (ENSSPUG00000006106)	ENSSPUG00000006088
Episquamata	ANCESTRAL SPECIES	3	ENSGT00940000160388	ENSGT00940000154508.a.a	ENSGT00390000015511	ENSGT00390000003901	ENSGT00940000153232.a.b	ENSGT00940000159063	ENSGT00940000158457	ENSGT00520000055589.d	ENSGT00390000006550	ENSGT00390000015545	ENSGT00940000167021	ENSGT00940000158194	ENSGT00940000158376	ENSGT00940000161922.i.b	ENSGT00410000025556.a.a.a.b	ENSGT00940000153676.a ##22	ENSGT00910000148572	ENSGT01030000234566.e.b.a.a	ENSGT00950000183045.C	ENSGT00940000153230.A	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000158368	ENSGT00940000154593.a.b	ENSGT00390000009873	ENSGT00940000158356	ENSGT00940000160772
Toxicofera	ANCESTRAL SPECIES	21	ENSGT00940000160388	ENSGT00940000154508.a.a	ENSGT00390000015511	ENSGT00390000003901	ENSGT00940000153232.a.b	ENSGT00940000159063	ENSGT00940000158457	ENSGT00520000055589.d	ENSGT00390000006550	ENSGT00390000015545	ENSGT00940000167021	ENSGT00940000158194	ENSGT00940000158376	ENSGT00940000161922.i.b	ENSGT00410000025556.a.a.a.b	ENSGT00940000153676.a ##22	ENSGT00910000148572	ENSGT01030000234566.e.b.a.a	ENSGT00950000183045.C	ENSGT00940000153230.A	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000158368	ENSGT00940000154593.a.b	ENSGT00390000009873	ENSGT00940000158356	ENSGT00940000160772
Elapidae	ANCESTRAL SPECIES	11	ENSGT00940000160388	ENSGT00940000154508.a.a	ENSGT00390000015511	ENSGT00390000003901	ENSGT00940000153232.a.b	ENSGT00940000159063	ENSGT00940000158457	ENSGT00520000055589.d	ENSGT00390000006550	ENSGT00390000015545	ENSGT00940000167021.a	ENSGT00940000158194	ENSGT00940000158376	ENSGT00940000161922.i.b	ENSGT00410000025556.a.a.a.b.w.a	ENSGT00940000153676.a ##22	ENSGT00910000148572	ENSGT01030000234566.e.b.a.a	ENSGT00950000183045.C	ENSGT00940000153230.A	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000158368	ENSGT00940000154593.a.b	ENSGT00390000009873	ENSGT00940000158356	ENSGT00940000160772
Elapidae_a	ANCESTRAL SPECIES	13	ENSGT00940000160388	ENSGT00940000154508.a.a	ENSGT00390000003901	ENSGT00940000153232.a.b	ENSGT00940000159063	ENSGT00940000158457	ENSGT00520000055589.d	ENSGT00390000006550.b	ENSGT00390000006550.a	ENSGT00390000015545	ENSGT00940000167021.a	ENSGT00940000158194	ENSGT00940000158376	ENSGT00940000161922.i.b	ENSGT00410000025556.a.a.a.b.w.a	ENSGT00940000153676.a ##22	ENSGT00910000148572	ENSGT01030000234566.e.b.a.a	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000158368	ENSGT00940000154593.a.b	ENSGT00390000009873	ENSGT00940000158356	ENSGT00940000160772	ENSGT00390000006633.b	ENSGT00940000158105
Acanthophiinae	ANCESTRAL SPECIES	4	ENSGT00940000160388	ENSGT00940000154508.a.a	ENSGT00390000003901	ENSGT00940000153232.a.b	ENSGT00940000159063	ENSGT00940000158457	ENSGT00520000055589.d	ENSGT00390000006550.b	ENSGT00390000006550.a	ENSGT00390000015545	ENSGT00940000167021.a	ENSGT00940000158194	ENSGT00940000158376	ENSGT00940000161922.i.b	ENSGT00410000025556.a.a.a.b.w.a	ENSGT00940000153676.a ##22	ENSGT00910000148572	ENSGT01030000234566.e.b.a.a	ENSGT00990000212018	ENSGT00950000183045.C	ENSGT00990000214110	ENSGT00940000156167.b	ENSGT00940000154267.A	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d.a	ENSGT00940000158368	ENSGT00940000154593.a.b	ENSGT00390000009873
Eastern brown snake	MODERN SPECIES	12						ENSPTXG00000001064	ENPP6 (ENSPTXG00000001068)	STOX2 (ENSPTXG00000001072)	TRAPPC11 (ENSPTXG00000001096)	RWDD4 (ENSPTXG00000001100)	ENSPTXG00000001107	ING2 (ENSPTXG00000001117)	ENSPTXG00000001122	ENSPTXG00000001127	WWC2 (ENSPTXG00000001132)	DCTD (ENSPTXG00000001137) ##22	TENM3 (ENSPTXG00000001152)	NACA2 (ENSPTXG00000001171)	ENSPTXG00000001175	ENSPTXG00000001177	ENSPTXG00000001184	ENSPTXG00000001216	AGA (ENSPTXG00000002658)	ENSPTXG00000002660	VEGFC (ENSPTXG00000002663)	ENSPTXG00000002666	SPCS3 (ENSPTXG00000002669)	ASB5 (ENSPTXG00000002674)	SPATA4 (ENSPTXG00000002678)	WDR17 (ENSPTXG00000002692)	ENSPTXG00000002766
Mainland tiger snake	MODERN SPECIES	18	ENSNSUG00000009618	ENSNSUG00000009619	CASP3 (ENSNSUG00000009620)	IRF2 (ENSNSUG00000009621)	ENPP6 (ENSNSUG00000009622)	STOX2 (ENSNSUG00000009624)	TRAPPC11 (ENSNSUG00000009636)	RWDD4 (ENSNSUG00000009648)	ING2 (ENSNSUG00000009662)	CDKN2AIP (ENSNSUG00000009664)	ENSNSUG00000009665	ENSNSUG00000009666	ENSNSUG00000009667	ENSNSUG00000009668	ENSNSUG00000009669	DCTD (ENSNSUG00000009670) ##22	ENSNSUG00000009671	TENM3 (ENSNSUG00000009672)	ENSNSUG00000009674	ENSNSUG00000009675	AGA (ENSNSUG00000009676)	ENSNSUG00000009677	VEGFC (ENSNSUG00000009678)	ENSNSUG00000009680	SPCS3 (ENSNSUG00000009681)	ASB5 (ENSNSUG00000009682)	SPATA4 (ENSNSUG00000009685)	WDR17 (ENSNSUG00000009691)	GPM6A (ENSNSUG00000009700)	GLRA3 (ENSNSUG00000009701)	HPGD (ENSNSUG00000009702)
Blue-lipped sea krait	MODERN SPECIES	10468																DCTD (ENSLLTG00000006512) ##22
Indian cobra	MODERN SPECIES	3	SLC25A4 (ENSNNAG00000011745)	HELT (ENSNNAG00000011765)	ACSL1 (ENSNNAG00000011797)	ENSNNAG00000011889	PRIMPOL (ENSNNAG00000011991)	IRF2 (ENSNNAG00000012082)	ENPP6 (ENSNNAG00000012210)	STOX2 (ENSNNAG00000012240)	TRAPPC11 (ENSNNAG00000012275)	RWDD4 (ENSNNAG00000012437)	ENSNNAG00000012459	ING2 (ENSNNAG00000012523)	ENSNNAG00000007511	ENSNNAG00000007529	WWC2 (ENSNNAG00000007564)	DCTD (ENSNNAG00000007729) ##22	TENM3 (ENSNNAG00000007811)	AGA (ENSNNAG00000007902)	NEIL3 (ENSNNAG00000007929)	VEGFC (ENSNNAG00000007968)	SPCS3 (ENSNNAG00000008000)	ASB5 (ENSNNAG00000008020)	SPATA4 (ENSNNAG00000008079)	WDR17 (ENSNNAG00000008274)	GPM6A (ENSNNAG00000010745)	GLRA3 (ENSNNAG00000010772)	HPGD (ENSNNAG00000010823)	CEP44 (ENSNNAG00000010850)	FBXO8 (ENSNNAG00000010885)	HAND2 (ENSNNAG00000010908)	ENSNNAG00000010919
Lizard	MODERN SPECIES	1122																ENSACAG00000013589 ##22	ENSACAG00000013597	ENSACAG00000039517
Laterata	ANCESTRAL SPECIES	9	ENSGT00940000154508.a.a	ENSGT00390000015511	ENSGT00390000003901	ENSGT00940000153232.a.b	ENSGT00940000159063	ENSGT00940000158457	ENSGT00520000055589.d	ENSGT00390000006550	ENSGT00390000015545	ENSGT00950000185893	ENSGT00940000158194	ENSGT00940000158376	ENSGT00940000162234	ENSGT00940000161922.i.b	ENSGT00410000025556.a.a.a.b	ENSGT00940000153676.a ##22	ENSGT01030000234566.e.b.a.a	ENSGT00950000183045.C	ENSGT00940000153230.A	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000158368	ENSGT00940000154593.a.b	ENSGT00390000009873.a	ENSGT00940000158356	ENSGT00940000160772	ENSGT00390000009191
Common wall lizard	MODERN SPECIES	17	ACSL1 (ENSPMRG00000009636)	ENSPMRG00000009652	PRIMPOL (ENSPMRG00000009678)	CASP3 (ENSPMRG00000009766)	ENSPMRG00000009773	ENPP6 (ENSPMRG00000009792)	STOX2 (ENSPMRG00000009808)	TRAPPC11 (ENSPMRG00000009825)	RWDD4 (ENSPMRG00000009881)	ENSPMRG00000009896	ING2 (ENSPMRG00000009899)	ENSPMRG00000009905	ENSPMRG00000009910	ENSPMRG00000009913	WWC2 (ENSPMRG00000009963)	DCTD (ENSPMRG00000010175) ##22	ENSPMRG00000010196	ENSPMRG00000010294	ENSPMRG00000010303	ENSPMRG00000010312	AGA (ENSPMRG00000010319)	NEIL3 (ENSPMRG00000010325)	VEGFC (ENSPMRG00000010331)	SPCS3 (ENSPMRG00000010334)	ASB5 (ENSPMRG00000010339)	SPATA4 (ENSPMRG00000010345)	WDR17 (ENSPMRG00000010350)	GPM6A (ENSPMRG00000010361)	ENSPMRG00000010367	GLRA3 (ENSPMRG00000010369)	HPGD (ENSPMRG00000010378)
Argentine black and white tegu	MODERN SPECIES	26	ACSL1 (ENSSMRG00000009700)	ENSSMRG00000009695	PRIMPOL (ENSSMRG00000009682)	CASP3 (ENSSMRG00000009681)	IRF2 (ENSSMRG00000009680)	ENSSMRG00000009674	ENPP6 (ENSSMRG00000009673)	STOX2 (ENSSMRG00000009671)	TRAPPC11 (ENSSMRG00000009617)	RWDD4 (ENSSMRG00000009615)	ENSSMRG00000009614	ING2 (ENSSMRG00000009613)	ENSSMRG00000009609	ENSSMRG00000009607	WWC2 (ENSSMRG00000009600)	DCTD (ENSSMRG00000009584) ##22	ENSSMRG00000009575	TENM3 (ENSSMRG00000009568)	ENSSMRG00000009539	AGA (ENSSMRG00000009489)	NEIL3 (ENSSMRG00000009488)	VEGFC (ENSSMRG00000009460)	SPCS3 (ENSSMRG00000009459)	ASB5 (ENSSMRG00000009458)	SPATA4 (ENSSMRG00000009454)	WDR17 (ENSSMRG00000009452)	GPM6A (ENSSMRG00000009451)	ENSSMRG00000009408	GLRA3 (ENSSMRG00000009406)	HPGD (ENSSMRG00000009397)	CEP44 (ENSSMRG00000009396)
Archelosauria	ANCESTRAL SPECIES	4	ENSGT00390000015511	ENSGT00390000003901	ENSGT00940000153232.a.b	ENSGT01050000246068	ENSGT00940000159063	ENSGT00940000158457	ENSGT00520000055589.d	ENSGT00390000006550	ENSGT00390000015545	ENSGT00950000185893	ENSGT00940000158194	ENSGT00940000158376	ENSGT00940000162234	ENSGT00940000161922.i.b	ENSGT00410000025556.a.a.a.b	ENSGT00940000153676.a ##22	ENSGT00910000148572	ENSGT01030000234566.e.b.a.a	ENSGT00950000183045.C	ENSGT00940000153230.A	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00940000167698	ENSGT00390000006915.d	ENSGT00940000158368	ENSGT00940000154593.a.b	ENSGT00390000009873	ENSGT00940000158356
Cryptodira	ANCESTRAL SPECIES	2	ENSGT00940000154508.a.a	ENSGT00390000015511	ENSGT00390000003901	ENSGT00940000153232.a.b	ENSGT01050000246068	ENSGT00940000159063	ENSGT00940000158457	ENSGT00520000055589.d	ENSGT00390000006550	ENSGT00390000015545	ENSGT00950000185893	ENSGT00940000158194	ENSGT00940000158376	ENSGT00940000161922.i.b	ENSGT00410000025556.a.a.a.b	ENSGT00940000153676.a ##22	ENSGT01030000234566.e.b.a.a	ENSGT00950000183045.C	ENSGT00940000153230.A	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000158368	ENSGT00940000154593.a.b	ENSGT00390000009873	ENSGT00940000158356	ENSGT00940000160772	ENSGT00390000009191
Testudinoidea	ANCESTRAL SPECIES	10	ENSGT00940000154508.a.a	ENSGT00390000015511	ENSGT00390000003901	ENSGT00940000153232.a.b	ENSGT01050000246068	ENSGT00940000159063	ENSGT00940000158457	ENSGT00520000055589.d	ENSGT00390000006550	ENSGT00390000015545	ENSGT00950000185893	ENSGT00940000158194	ENSGT00940000158376	ENSGT00940000161922.i.b	ENSGT00410000025556.a.a.a.b	ENSGT00940000153676.a ##22	ENSGT01030000234566.e.b.a.a	ENSGT00950000183045.C	ENSGT00940000153230.A	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000158368	ENSGT00940000154593.a.b	ENSGT00390000009873	ENSGT00940000158356	ENSGT00940000160772	ENSGT00390000009191
Emydidae	ANCESTRAL SPECIES	1	ENSGT00940000154508.a.a	ENSGT00390000015511	ENSGT00390000003901	ENSGT00940000153232.a.b	ENSGT01050000246068	ENSGT00940000159063	ENSGT00940000158457	ENSGT00520000055589.d	ENSGT00390000006550	ENSGT00390000015545	ENSGT00950000185893	ENSGT00940000158194	ENSGT00940000158376	ENSGT00940000161922.i.b	ENSGT00410000025556.a.a.a.b	ENSGT00940000153676.a ##22	ENSGT01030000234566.e.b.a.a	ENSGT00950000183045.C	ENSGT00940000153230.A	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000158368	ENSGT00940000154593.a.b	ENSGT00390000009873	ENSGT00940000158356	ENSGT00940000160772	ENSGT00390000009191
Three-toed box turtle	MODERN SPECIES	26	ACSL1 (ENSTMTG00000006186)	CENPU (ENSTMTG00000006143)	PRIMPOL (ENSTMTG00000006103)	CASP3 (ENSTMTG00000006087)	IRF2 (ENSTMTG00000006062)	ENPP6 (ENSTMTG00000005829)	STOX2 (ENSTMTG00000005793)	TRAPPC11 (ENSTMTG00000005709)	RWDD4 (ENSTMTG00000005667)	ENSTMTG00000005652	ING2 (ENSTMTG00000005641)	ENSTMTG00000005613	ENSTMTG00000005598	ENSTMTG00000005586	WWC2 (ENSTMTG00000005538)	DCTD (ENSTMTG00000005516) ##22	TENM3 (ENSTMTG00000005465)	AGA (ENSTMTG00000005446)	ENSTMTG00000005431	VEGFC (ENSTMTG00000005414)	SPCS3 (ENSTMTG00000005407)	ASB5 (ENSTMTG00000005377)	SPATA4 (ENSTMTG00000005358)	WDR17 (ENSTMTG00000005197)	GPM6A (ENSTMTG00000005149)	GLRA3 (ENSTMTG00000005114)	HPGD (ENSTMTG00000005087)	CEP44 (ENSTMTG00000004951)	FBXO8 (ENSTMTG00000004929)	HAND2 (ENSTMTG00000004921)	SCRG1 (ENSTMTG00000004909)
painted turtle	MODERN SPECIES	704	CENPU (ENSCPBG00000008437)	ENSCPBG00000008432	ENSCPBG00000008426	CASP3 (ENSCPBG00000008419)	ENSCPBG00000008414	ENSCPBG00000008410	ENPP6 (ENSCPBG00000008404)	STOX2 (ENSCPBG00000008387)	TRAPPC11 (ENSCPBG00000008347)	RWDD4 (ENSCPBG00000008322)	ENSCPBG00000008310	ING2 (ENSCPBG00000008299)	ENSCPBG00000008289	ENSCPBG00000008281	WWC2 (ENSCPBG00000008249)	DCTD (ENSCPBG00000008229) ##22	ENSCPBG00000008146	ENSCPBG00000008109
Testudinidae	ANCESTRAL SPECIES	11	ENSGT00940000154622.a.a	ENSGT00940000160388	ENSGT00940000154508.a.a	ENSGT00390000015511	ENSGT00390000003901	ENSGT00940000153232.a.b	ENSGT00940000159063	ENSGT00940000158457	ENSGT00520000055589.d	ENSGT00390000006550	ENSGT00390000015545	ENSGT00940000158194	ENSGT00940000158376	ENSGT00940000161922.i.b	ENSGT00410000025556.a.a.a.b	ENSGT00940000153676.a ##22	ENSGT01030000234566.e.b.a.a	ENSGT00950000183045.C	ENSGT00940000153230.A	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000158368	ENSGT00940000154593.a.b	ENSGT00390000009873	ENSGT00940000158356	ENSGT00940000160772	ENSGT00390000009191
Abingdon island giant tortoise	MODERN SPECIES	778											ENSCABG00000006549	ENSCABG00000006547	ENSCABG00000006544	ENSCABG00000006542	ENSCABG00000006541	DCTD (ENSCABG00000006535) ##22
Goode s thornscrub tortoise	MODERN SPECIES	19	CENPU (ENSGEVG00005002846)	PRIMPOL (ENSGEVG00005002881)	CASP3 (ENSGEVG00005002909)	IRF2 (ENSGEVG00005002937)	ENPP6 (ENSGEVG00005002964)	STOX2 (ENSGEVG00005003037)	TRAPPC11 (ENSGEVG00005003067)	RWDD4 (ENSGEVG00005003154)	ENSGEVG00005003168	ING2 (ENSGEVG00005003175)	ENSGEVG00005003189	ENSGEVG00005003196	ENSGEVG00005003207	ENSGEVG00005003220	ENSGEVG00005003226	DCTD (ENSGEVG00005003233) ##22	ENSGEVG00005003257	AGA (ENSGEVG00005003296)	ENSGEVG00005003316	VEGFC (ENSGEVG00005003328)	SPCS3 (ENSGEVG00005003340)	ASB5 (ENSGEVG00005003356)	SPATA4 (ENSGEVG00005003382)	WDR17 (ENSGEVG00005003558)	GPM6A (ENSGEVG00005003929)	GLRA3 (ENSGEVG00005003944)	HPGD (ENSGEVG00005003961)	CEP44 (ENSGEVG00005003971)	FBXO8 (ENSGEVG00005004010)	HAND2 (ENSGEVG00005004018)	SCRG1 (ENSGEVG00005004025)
Chinese turtle	MODERN SPECIES	1610							IRF2 (ENSPSIG00000016830)	ENPP6 (ENSPSIG00000016255)	STOX2 (ENSPSIG00000014957)	TRAPPC11 (ENSPSIG00000010510)	RWDD4 (ENSPSIG00000010480)	ING2 (ENSPSIG00000001178)	CDKN2AIP (ENSPSIG00000010378)	ENSPSIG00000001171	WWC2 (ENSPSIG00000009796)	DCTD (ENSPSIG00000008907) ##22	TENM3 (ENSPSIG00000012946)	ENSPSIG00000001162	ENSPSIG00000001159	AGA (ENSPSIG00000012881)	NEIL3 (ENSPSIG00000012155)
Archosauria	ANCESTRAL SPECIES	1	ENSGT00390000015511	ENSGT00390000003901	ENSGT00940000153232.a.b	ENSGT00940000159063	ENSGT00940000158457	ENSGT00520000055589.d	ENSGT00390000006550	ENSGT00390000015545	ENSGT00950000185893	ENSGT00940000158194	ENSGT00940000158376	ENSGT00940000161922.i.b.a	ENSGT00940000162234	ENSGT00940000161922.i.b.b	ENSGT00410000025556.a.a.a.b	ENSGT00940000153676.a ##22	ENSGT00910000148572	ENSGT01030000234566.e.b.a.a	ENSGT00950000183045.C	ENSGT00940000153230.A	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00940000167698	ENSGT00390000006915.d	ENSGT00940000158368	ENSGT00940000154593.a.b	ENSGT00390000009873	ENSGT00940000158356
Aves	ANCESTRAL SPECIES	3	ENSGT00940000154508.a.a	ENSGT00390000015511	ENSGT00390000003901	ENSGT00940000153232.a.b	ENSGT00940000159063	ENSGT00940000158457	ENSGT00520000055589.d	ENSGT00390000006550	ENSGT00390000015545	ENSGT00940000158194	ENSGT00940000158376	ENSGT00940000161922.i.b.a	ENSGT00940000162234	ENSGT00940000161922.i.b.b	ENSGT00410000025556.a.a.a.b	ENSGT00940000153676.a ##22	ENSGT00910000148572	ENSGT01030000234566.e.b.a.a	ENSGT00950000183045.C	ENSGT00940000153230.A	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00940000167698	ENSGT00390000006915.d	ENSGT00940000158368	ENSGT00940000154593.a.b	ENSGT00390000009873	ENSGT00940000158356
Neognathae	ANCESTRAL SPECIES	5	ENSGT00940000160388	ENSGT00940000154508.a.a	ENSGT00390000015511	ENSGT00390000003901	ENSGT00940000153232.a.b	ENSGT00940000159063	ENSGT00940000158457	ENSGT00520000055589.d	ENSGT00390000006550	ENSGT00390000015545	ENSGT00940000158194	ENSGT00940000158376	ENSGT00940000161922.i.b.a	ENSGT00940000161922.i.b.b	ENSGT00410000025556.a.a.a.b	ENSGT00940000153676.a ##22	ENSGT00910000148572	ENSGT01030000234566.e.b.a.a	ENSGT00950000183045.C	ENSGT00940000153230.A	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000158368	ENSGT00940000154593.a.b	ENSGT00390000009873	ENSGT00940000158356	ENSGT00940000160772
Neognathae_b	ANCESTRAL SPECIES	4	ENSGT00940000160388	ENSGT00940000154508.a.a	ENSGT00390000015511	ENSGT00390000003901	ENSGT00940000153232.a.b	ENSGT00940000159063	ENSGT00940000158457	ENSGT00520000055589.d	ENSGT00390000006550	ENSGT00390000015545	ENSGT00940000158194	ENSGT00940000158376	ENSGT00940000161922.i.b.a	ENSGT00940000161922.i.b.b	ENSGT00410000025556.a.a.a.b	ENSGT00940000153676.a ##22	ENSGT00910000148572	ENSGT01030000234566.e.b.a.a	ENSGT00950000183045.C	ENSGT00940000153230.A	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000158368	ENSGT00940000154593.a.b	ENSGT00390000009873	ENSGT00940000158356	ENSGT00940000160772	ENSGT00390000009191
Passeriformes	ANCESTRAL SPECIES	4	ENSGT00940000154622.a.a	ENSGT00940000160388	ENSGT00940000154508.a.a	ENSGT00390000015511	ENSGT00390000003901	ENSGT00940000153232.a.b	ENSGT00940000159063	ENSGT00940000158457	ENSGT00520000055589.d	ENSGT00390000006550	ENSGT00390000015545	ENSGT00940000158194	ENSGT00940000158376	ENSGT00940000161922.i.b.a	ENSGT00410000025556.a.a.a.b	ENSGT00940000153676.a ##22	ENSGT00910000148572	ENSGT01030000234566.e.b.a.a	ENSGT00950000183045.C	ENSGT00940000153230.A	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000158368	ENSGT00940000154593.a.b	ENSGT00390000009873	ENSGT00940000158356	ENSGT00940000160772	ENSGT00390000009191
Great tit	MODERN SPECIES	23	SLC25A4 (ENSPMJG00000002371)	HELT (ENSPMJG00000002361)	ACSL1 (ENSPMJG00000002332)	CENPU (ENSPMJG00000002306)	PRIMPOL (ENSPMJG00000002243)	CASP3 (ENSPMJG00000002233)	IRF2 (ENSPMJG00000002224)	ENPP6 (ENSPMJG00000002212)	STOX2 (ENSPMJG00000002130)	TRAPPC11 (ENSPMJG00000002099)	RWDD4 (ENSPMJG00000002084)	ING2 (ENSPMJG00000002082)	CDKN2AIP (ENSPMJG00000002066)	ENSPMJG00000001952	WWC2 (ENSPMJG00000001943)	DCTD (ENSPMJG00000001934) ##22	ENSPMJG00000001933	TENM3 (ENSPMJG00000001818)	AGA (ENSPMJG00000001779)	NEIL3 (ENSPMJG00000001773)	SPCS3 (ENSPMJG00000001714)	ASB5 (ENSPMJG00000001700)	VEGFC (ENSPMJG00000001686)	WDR17 (ENSPMJG00000001630)	GPM6A (ENSPMJG00000001622)	GLRA3 (ENSPMJG00000001600)	HPGD (ENSPMJG00000001582)	CEP44 (ENSPMJG00000001567)	FBXO8 (ENSPMJG00000001560)	HAND2 (ENSPMJG00000001532)	SCRG1 (ENSPMJG00000001521)
Passeriformes_d	ANCESTRAL SPECIES	4	ENSGT00940000154622.a.a	ENSGT00940000160388	ENSGT00940000154508.a.a	ENSGT00390000015511	ENSGT00390000003901	ENSGT00940000153232.a.b	ENSGT00940000159063	ENSGT00940000158457	ENSGT00520000055589.d	ENSGT00390000006550	ENSGT00390000015545	ENSGT00940000158194	ENSGT00940000158376	ENSGT00940000161922.i.b.a	ENSGT00410000025556.a.a.a.b	ENSGT00940000153676.a ##22	ENSGT00910000148572	ENSGT01030000234566.e.b.a.a	ENSGT00950000183045.C	ENSGT00940000153230.A	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000158368	ENSGT00940000154593.a.b	ENSGT00390000009873	ENSGT00940000158356	ENSGT00940000160772	ENSGT00390000009191
Passeriformes_g	ANCESTRAL SPECIES	5	ENSGT00940000154622.a.a	ENSGT00940000160388	ENSGT00940000154508.a.a	ENSGT00390000015511	ENSGT00390000003901	ENSGT00940000153232.a.b	ENSGT00940000159063	ENSGT00940000158457	ENSGT00520000055589.d	ENSGT00390000006550	ENSGT00390000015545	ENSGT00940000158194	ENSGT00940000158376	ENSGT00940000161922.i.b.a	ENSGT00410000025556.a.a.a.b	ENSGT00940000153676.a ##22	ENSGT00910000148572	ENSGT01030000234566.e.b.a.a	ENSGT00950000183045.C	ENSGT00940000153230.A	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000158368	ENSGT00940000154593.a.b	ENSGT00390000009873	ENSGT00940000158356	ENSGT00940000160772	ENSGT00390000009191
Medium ground finch	MODERN SPECIES		CFAP97 (ENSGFOG00000007496)	SLC25A4 (ENSGFOG00000007509)	ACSL1 (ENSGFOG00000007515)	CENPU (ENSGFOG00000007539)	PRIMPOL (ENSGFOG00000007557)	CASP3 (ENSGFOG00000007587)	IRF2 (ENSGFOG00000007601)	ENPP6 (ENSGFOG00000007617)	STOX2 (ENSGFOG00000007626)	TRAPPC11 (ENSGFOG00000007633)	RWDD4 (ENSGFOG00000007667)	ING2 (ENSGFOG00000007679)	CDKN2AIP (ENSGFOG00000007689)	ENSGFOG00000007698	WWC2 (ENSGFOG00000007703)	DCTD (ENSGFOG00000007713) ##22	TENM3 (ENSGFOG00000007869)	ENSGFOG00000010900	AGA (ENSGFOG00000010904)	NEIL3 (ENSGFOG00000010910)	VEGFC (ENSGFOG00000010919)	SPCS3 (ENSGFOG00000010925)	ASB5 (ENSGFOG00000010931)	WDR17 (ENSGFOG00000010966)	GPM6A (ENSGFOG00000011465)	GLRA3 (ENSGFOG00000011470)	HPGD (ENSGFOG00000011504)	CEP44 (ENSGFOG00000011514)	FBXO8 (ENSGFOG00000011522)	HAND2 (ENSGFOG00000000006)	SCRG1 (ENSGFOG00000000150)
Passeroidea	ANCESTRAL SPECIES	4	ENSGT00940000154622.a.a	ENSGT00940000160388	ENSGT00940000154508.a.a	ENSGT00390000015511	ENSGT00390000003901	ENSGT00940000153232.a.b	ENSGT00940000159063	ENSGT00940000158457	ENSGT00520000055589.d	ENSGT00390000006550	ENSGT00390000015545	ENSGT00940000158194	ENSGT00940000158376	ENSGT00940000161922.i.b.a	ENSGT00410000025556.a.a.a.b	ENSGT00940000153676.a ##22	ENSGT00910000148572	ENSGT01030000234566.e.b.a.a	ENSGT00950000183045.C	ENSGT00940000153230.A	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000158368	ENSGT00940000154593.a.b	ENSGT00390000009873	ENSGT00940000158356	ENSGT00940000160772	ENSGT00390000009191
Zebra finch	MODERN SPECIES	25	ACSL1 (ENSTGUG00000006718)	HELT (ENSTGUG00000006754)	CENPU (ENSTGUG00000006711)	PRIMPOL (ENSTGUG00000006701)	CASP3 (ENSTGUG00000006682)	IRF2 (ENSTGUG00000006662)	ENPP6 (ENSTGUG00000006653)	STOX2 (ENSTGUG00000006645)	TRAPPC11 (ENSTGUG00000006590)	RWDD4 (ENSTGUG00000006580)	ING2 (ENSTGUG00000006578)	CDKN2AIP (ENSTGUG00000018986)	ENSTGUG00000006572	ENSTGUG00000026343	WWC2 (ENSTGUG00000006543)	DCTD (ENSTGUG00000006536) ##22	TENM3 (ENSTGUG00000006481)	AGA (ENSTGUG00000006468)	NEIL3 (ENSTGUG00000006458)	VEGFC (ENSTGUG00000006451)	SPCS3 (ENSTGUG00000006441)	ASB5 (ENSTGUG00000006421)	WDR17 (ENSTGUG00000006388)	GPM6A (ENSTGUG00000006358)	GLRA3 (ENSTGUG00000006325)	HPGD (ENSTGUG00000006311)	CEP44 (ENSTGUG00000006297)	FBXO8 (ENSTGUG00000006285)	ENSTGUG00000027176	HAND2 (ENSTGUG00000006281)	SCRG1 (ENSTGUG00000006280)
Common canary	MODERN SPECIES	2	HELT (ENSSCAG00000009900)	ACSL1 (ENSSCAG00000009905)	CENPU (ENSSCAG00000009922)	PRIMPOL (ENSSCAG00000009936)	CASP3 (ENSSCAG00000009948)	IRF2 (ENSSCAG00000009952)	ENPP6 (ENSSCAG00000009956)	STOX2 (ENSSCAG00000009967)	TRAPPC11 (ENSSCAG00000009978)	RWDD4 (ENSSCAG00000009990)	ING2 (ENSSCAG00000009996)	CDKN2AIP (ENSSCAG00000010003)	ENSSCAG00000010009	WWC2 (ENSSCAG00000010012)	ENSSCAG00000010019	DCTD (ENSSCAG00000010024) ##22	ENSSCAG00000010030	ENSSCAG00000010063	ENSSCAG00000010138	AGA (ENSSCAG00000010144)	NEIL3 (ENSSCAG00000010148)	VEGFC (ENSSCAG00000010159)	SPCS3 (ENSSCAG00000010167)	ASB5 (ENSSCAG00000010170)	WDR17 (ENSSCAG00000010175)	GPM6A (ENSSCAG00000010193)	GLRA3 (ENSSCAG00000010203)	HPGD (ENSSCAG00000010216)	CEP44 (ENSSCAG00000010219)	FBXO8 (ENSSCAG00000010222)	HAND2 (ENSSCAG00000010229)
Flycatcher	MODERN SPECIES	22	SLC25A4 (ENSFALG00000011836)	HELT (ENSFALG00000011825)	ACSL1 (ENSFALG00000011796)	CENPU (ENSFALG00000027362)	PRIMPOL (ENSFALG00000011764)	CASP3 (ENSFALG00000011745)	IRF2 (ENSFALG00000011727)	ENPP6 (ENSFALG00000011715)	STOX2 (ENSFALG00000011708)	TRAPPC11 (ENSFALG00000011667)	RWDD4 (ENSFALG00000011646)	ING2 (ENSFALG00000014622)	CDKN2AIP (ENSFALG00000011643)	ENSFALG00000014601	WWC2 (ENSFALG00000011638)	DCTD (ENSFALG00000027516) ##22	ENSFALG00000025955	TENM3 (ENSFALG00000011630)	AGA (ENSFALG00000026144)	NEIL3 (ENSFALG00000011605)	VEGFC (ENSFALG00000011590)	SPCS3 (ENSFALG00000024232)	ASB5 (ENSFALG00000011570)	WDR17 (ENSFALG00000011543)	GPM6A (ENSFALG00000025678)	GLRA3 (ENSFALG00000011516)	HPGD (ENSFALG00000025221)	CEP44 (ENSFALG00000011499)	FBXO8 (ENSFALG00000024067)	HAND2 (ENSFALG00000011490)	SCRG1 (ENSFALG00000011488)
Neognathae_c	ANCESTRAL SPECIES	3	ENSGT00940000160388	ENSGT00940000154508.a.a	ENSGT00390000015511	ENSGT00390000003901	ENSGT00940000153232.a.b	ENSGT00940000159063	ENSGT00940000158457	ENSGT00520000055589.d	ENSGT00390000006550	ENSGT00390000015545	ENSGT00940000158194	ENSGT00940000158376	ENSGT00940000161922.i.b.a	ENSGT00940000161922.i.b.b	ENSGT00410000025556.a.a.a.b	ENSGT00940000153676.a ##22	ENSGT01030000234566.e.b.a.a	ENSGT00950000183045.C	ENSGT00940000153230.A	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000158368	ENSGT00940000154593.a.b	ENSGT00390000009873	ENSGT00940000158356	ENSGT00940000160772	ENSGT00390000009191	ENSGT00390000006633.b
Golden eagle	MODERN SPECIES		ACSL1 (ENSACCG00020010049)	CENPU (ENSACCG00020010067)	PRIMPOL (ENSACCG00020010094)	CASP3 (ENSACCG00020010115)	IRF2 (ENSACCG00020010129)	ENPP6 (ENSACCG00020010158)	STOX2 (ENSACCG00020010178)	TRAPPC11 (ENSACCG00020010191)	RWDD4 (ENSACCG00020010211)	ING2 (ENSACCG00020010222)	ENSACCG00020010238	ENSACCG00020010248	ENSACCG00020010255	ENSACCG00020010270	WWC2 (ENSACCG00020010330)	DCTD (ENSACCG00020010359) ##22	TENM3 (ENSACCG00020010429)	AGA (ENSACCG00020010484)	NEIL3 (ENSACCG00020010497)	VEGFC (ENSACCG00020010512)	SPCS3 (ENSACCG00020010530)	ASB5 (ENSACCG00020010555)	WDR17 (ENSACCG00020010660)	GPM6A (ENSACCG00020010783)	GLRA3 (ENSACCG00020010806)	HPGD (ENSACCG00020010819)	CEP44 (ENSACCG00020010838)	FBXO8 (ENSACCG00020010854)	HAND2 (ENSACCG00020010872)	SCRG1 (ENSACCG00020010883)	SAP30 (ENSACCG00020010894)
Kakapo	MODERN SPECIES	24	ACSL1 (ENSSHBG00005012971)	CENPU (ENSSHBG00005012983)	PRIMPOL (ENSSHBG00005012999)	CASP3 (ENSSHBG00005013019)	IRF2 (ENSSHBG00005013032)	ENSSHBG00005013045	ENSSHBG00005013054	STOX2 (ENSSHBG00005013069)	ENSSHBG00005013077	TRAPPC11 (ENSSHBG00005013088)	RWDD4 (ENSSHBG00005013100)	ING2 (ENSSHBG00005013117)	CDKN2AIP (ENSSHBG00005013134)	ENSSHBG00005013144	WWC2 (ENSSHBG00005013182)	DCTD (ENSSHBG00005013251) ##22	TENM3 (ENSSHBG00005013307)	AGA (ENSSHBG00005013414)	NEIL3 (ENSSHBG00005013429)	ENSSHBG00005013439	VEGFC (ENSSHBG00005013455)	SPCS3 (ENSSHBG00005013467)	ASB5 (ENSSHBG00005013483)	ENSSHBG00005013504	ENSSHBG00005013523	GPM6A (ENSSHBG00005013531)	GLRA3 (ENSSHBG00005013547)	HPGD (ENSSHBG00005013562)	CEP44 (ENSSHBG00005013578)	FBXO8 (ENSSHBG00005013595)	HAND2 (ENSSHBG00005013605)
Galloanserae	ANCESTRAL SPECIES	5	ENSGT00940000160388	ENSGT00940000154508.a.a	ENSGT00390000015511	ENSGT00390000003901	ENSGT00940000153232.a.b	ENSGT00940000159063	ENSGT00940000158457	ENSGT00520000055589.d	ENSGT00390000006550	ENSGT00390000015545	ENSGT00940000158194	ENSGT00940000158376	ENSGT00940000161922.i.b.a	ENSGT00940000161922.i.b.b	ENSGT00410000025556.a.a.a.b	ENSGT00940000153676.a ##22	ENSGT00910000148572	ENSGT01030000234566.e.b.a.a	ENSGT00950000183045.C	ENSGT00940000153230.A	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000158368	ENSGT00940000154593.a.b	ENSGT00390000009873	ENSGT00940000158356	ENSGT00940000160772
Anatidae	ANCESTRAL SPECIES	2	ENSGT00940000160388	ENSGT00940000154508.a.a	ENSGT00390000015511	ENSGT00390000003901	ENSGT00940000153232.a.b	ENSGT00940000159063	ENSGT00940000158457	ENSGT00520000055589.d	ENSGT00390000006550	ENSGT00390000015545	ENSGT00940000158194	ENSGT00940000158376	ENSGT00940000161922.i.b.a	ENSGT00940000161922.i.b.b	ENSGT00410000025556.a.a.a.b	ENSGT00940000153676.a ##22	ENSGT00910000148572	ENSGT01030000234566.e.b.a.a	ENSGT00950000183045.C	ENSGT00940000153230.A	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000158368	ENSGT00940000154593.a.b	ENSGT00390000009873	ENSGT00940000158356	ENSGT00940000160772
Pink-footed goose	MODERN SPECIES	45	HELT (ENSABRG00000020236)	ACSL1 (ENSABRG00000020240)	CENPU (ENSABRG00000020248)	PRIMPOL (ENSABRG00000020253)	CASP3 (ENSABRG00000020256)	IRF2 (ENSABRG00000020262)	ENPP6 (ENSABRG00000000157)	STOX2 (ENSABRG00000000166)	TRAPPC11 (ENSABRG00000000171)	RWDD4 (ENSABRG00000000208)	ING2 (ENSABRG00000000252)	ENSABRG00000000268	ENSABRG00000000285	ENSABRG00000000307	WWC2 (ENSABRG00000000349)	DCTD (ENSABRG00000000462) ##22	ENSABRG00000000487	TENM3 (ENSABRG00000000542)
Duck	MODERN SPECIES	22	SLC4A11 (ENSAPLG00000004523)	DNAAF9 (ENSAPLG00000004579)	ATRN (ENSAPLG00000004965)	GFRA4 (ENSAPLG00000005430)	ADAM33 (ENSAPLG00000005645)	ENSAPLG00000021920	ENSAPLG00000023116	FBXO41 (ENSAPLG00000014918)	ENSAPLG00000021748	ENSAPLG00000018305	ENSAPLG00000027296	SFXN5 (ENSAPLG00000005231)	ENSAPLG00000018061	EXOC6B (ENSAPLG00000006898)	ZNF638 (ENSAPLG00000019837)	DCTD (ENSAPLG00000002602) ##22	ENSAPLG00000016426	ENSAPLG00000016422	ENSAPLG00000031221	AGA (ENSAPLG00000013364)	NEIL3 (ENSAPLG00000013305)	VEGFC (ENSAPLG00000005470)	SPCS3 (ENSAPLG00000005667)	ASB5 (ENSAPLG00000005751)	SPATA4 (ENSAPLG00000006032)	WDR17 (ENSAPLG00000006133)	ENSAPLG00000020184	GPM6A (ENSAPLG00000002472)	GLRA3 (ENSAPLG00000002786)	HPGD (ENSAPLG00000002860)	CEP44 (ENSAPLG00000003165)
Phasianidae	ANCESTRAL SPECIES	2	ENSGT00940000160388	ENSGT00940000154508.a.a.a	ENSGT00390000015511	ENSGT00390000003901	ENSGT00940000153232.a.b	ENSGT00940000159063	ENSGT00940000158457	ENSGT00520000055589.d	ENSGT00390000006550	ENSGT00390000015545	ENSGT00940000158194	ENSGT00940000158376	ENSGT00940000161922.i.b.a	ENSGT00940000161922.i.b.b	ENSGT00410000025556.a.a.a.b	ENSGT00940000153676.a ##22	ENSGT00910000148572	ENSGT01030000234566.e.b.a.a	ENSGT00950000183045.C	ENSGT00940000153230.A	ENSGT00940000155038	ENSGT00940000158105	ENSGT00940000154466	ENSGT00390000006633.b	ENSGT00390000009191	ENSGT00940000160772	ENSGT00940000158356	ENSGT00390000009873	ENSGT00940000154593.a.b	ENSGT00940000158368	ENSGT00390000006915.d
Japanese quail	MODERN SPECIES	22	SLC25A4 (ENSCJPG00005009599)	HELT (ENSCJPG00005009600)	ACSL1 (ENSCJPG00005009601)	CENPU (ENSCJPG00005009602)	PRIMPOL (ENSCJPG00005009603)	CASP3 (ENSCJPG00005009604)	IRF2 (ENSCJPG00005009605)	ENPP6 (ENSCJPG00005009606)	STOX2 (ENSCJPG00005009607)	TRAPPC11 (ENSCJPG00005009608)	RWDD4 (ENSCJPG00005009609)	ING2 (ENSCJPG00005009611)	CDKN2AIP (ENSCJPG00005009613)	ENSCJPG00005009615	WWC2 (ENSCJPG00005009619)	DCTD (ENSCJPG00005009621) ##22	ENSCJPG00005009622	ENSCJPG00005009627	ENSCJPG00005009875	AGA (ENSCJPG00005009890)	NEIL3 (ENSCJPG00005009892)	GALNTL6 (ENSCJPG00005009911)	GALNT7 (ENSCJPG00005009913)	HMGB2 (ENSCJPG00005009916)	SAP30 (ENSCJPG00005009922)	SCRG1 (ENSCJPG00005009923)	HAND2 (ENSCJPG00005009924)	FBXO8 (ENSCJPG00005009931)	CEP44 (ENSCJPG00005009932)	HPGD (ENSCJPG00005009938)	GLRA3 (ENSCJPG00005009946)
Phasianidae_b	ANCESTRAL SPECIES	4	ENSGT00940000160388	ENSGT00940000154508.a.a.a	ENSGT00390000015511	ENSGT00390000003901	ENSGT00940000153232.a.b	ENSGT00940000159063	ENSGT00940000158457	ENSGT00520000055589.d	ENSGT00390000006550	ENSGT00390000015545	ENSGT00940000158194	ENSGT00940000158376	ENSGT00940000161922.i.b.a	ENSGT00940000161922.i.b.b	ENSGT00410000025556.a.a.a.b	ENSGT00940000153676.a ##22	ENSGT01030000234566.e.b.a.a	ENSGT00950000183045.C	ENSGT00940000153230.A	ENSGT00940000155038	ENSGT00940000158105	ENSGT00940000154466	ENSGT00390000006633.b	ENSGT00390000009191	ENSGT00940000160772	ENSGT00940000158356	ENSGT00390000009873	ENSGT00940000154593.a.b	ENSGT00940000158368	ENSGT00390000006915.d	ENSGT00940000158602
Chicken	MODERN SPECIES	33	HELT (ENSGALG00010006955)	ACSL1 (ENSGALG00010007007)	CENPU (ENSGALG00010007038)	PRIMPOL (ENSGALG00010007085)	CASP3 (ENSGALG00010007067)	IRF2 (ENSGALG00010007130)	ENPP6 (ENSGALG00010007187)	STOX2 (ENSGALG00010007283)	TRAPPC11 (ENSGALG00010007294)	RWDD4 (ENSGALG00010007326)	ING2 (ENSGALG00010007353)	CDKN2AIP (ENSGALG00010007376)	ENSGALG00010007394	ENSGALG00010008525	WWC2 (ENSGALG00010007399)	DCTD (ENSGALG00010007416) ##22	TENM3 (ENSGALG00010007480)	AGA (ENSGALG00010004457)	NEIL3 (ENSGALG00010004472)	GALNTL6 (ENSGALG00010002926)	ENSGALG00010002932	GALNT7 (ENSGALG00010002937)	HMGB2 (ENSGALG00010002939)	SAP30 (ENSGALG00010002943)	SCRG1 (ENSGALG00010002956)	HAND2 (ENSGALG00010002982)	FBXO8 (ENSGALG00010002779)	CEP44 (ENSGALG00010002787)	HPGD (ENSGALG00010002632)	GLRA3 (ENSGALG00010002656)	GPM6A (ENSGALG00010003347)
Turkey	MODERN SPECIES	24	ENSMGAG00000020257	ENSMGAG00000006945	ENSMGAG00000006917	ENSMGAG00000006895	ENSMGAG00000006878	SAP30 (ENSMGAG00000006857)	ENSMGAG00000006874	GALNT7 (ENSMGAG00000006763)	ENSMGAG00000006836	ENSMGAG00000006747	ENSMGAG00000006745	ENSMGAG00000006733	ENSMGAG00000016724	ENSMGAG00000006585	ENSMGAG00000020804	ENSMGAG00000020453 ##22	ENSMGAG00000018663	ENSMGAG00000006504	ENSMGAG00000016258	ENSMGAG00000016260	ENSMGAG00000006502	ENSMGAG00000006495	ENSMGAG00000006479	ENSMGAG00000006404	ENSMGAG00000006401	ENSMGAG00000006359	ENSMGAG00000006316	ENSMGAG00000006217	ENSMGAG00000006271	ENSMGAG00000006292	ENSMGAG00000019600
African ostrich	MODERN SPECIES	664	ENSSCUG00000007558	ACSL1 (ENSSCUG00000007538)	CENPU (ENSSCUG00000007526)	CASP3 (ENSSCUG00000007522)	PRIMPOL (ENSSCUG00000007520)	IRF2 (ENSSCUG00000007518)	ENPP6 (ENSSCUG00000007511)	STOX2 (ENSSCUG00000007508)	TRAPPC11 (ENSSCUG00000007446)	RWDD4 (ENSSCUG00000007404)	ING2 (ENSSCUG00000007399)	CDKN2AIP (ENSSCUG00000007398)	ENSSCUG00000007394	ENSSCUG00000007393	WWC2 (ENSSCUG00000007389)	DCTD (ENSSCUG00000007382) ##22	ENSSCUG00000007357	ENSSCUG00000007328	AGA (ENSSCUG00000007321)	NEIL3 (ENSSCUG00000007318)	VEGFC (ENSSCUG00000007317)	SPCS3 (ENSSCUG00000007315)	ASB5 (ENSSCUG00000007313)	ENSSCUG00000007312	ENSSCUG00000007311	ENSSCUG00000007309	ENSSCUG00000007306	GPM6A (ENSSCUG00000007305)	GLRA3 (ENSSCUG00000007296)	HPGD (ENSSCUG00000007293)	CEP44 (ENSSCUG00000007288)
Australian saltwater crocodile	MODERN SPECIES	33	SLC25A4 (ENSCPRG00005000360)	ACSL1 (ENSCPRG00005000347)	CENPU (ENSCPRG00005000304)	PRIMPOL (ENSCPRG00005000286)	CASP3 (ENSCPRG00005000281)	IRF2 (ENSCPRG00005000275)	ENPP6 (ENSCPRG00005000200)	STOX2 (ENSCPRG00005000172)	TRAPPC11 (ENSCPRG00005000128)	RWDD4 (ENSCPRG00005000113)	ENSCPRG00005000104	ING2 (ENSCPRG00005000098)	ENSCPRG00005000093	ENSCPRG00005000087	WWC2 (ENSCPRG00005000071)	DCTD (ENSCPRG00005000066) ##22	ENSCPRG00005011479	ENSCPRG00005011461	AGA (ENSCPRG00005011436)	NEIL3 (ENSCPRG00005011433)	VEGFC (ENSCPRG00005011429)	SPCS3 (ENSCPRG00005011423)	ASB5 (ENSCPRG00005011420)	SPATA4 (ENSCPRG00005011405)	WDR17 (ENSCPRG00005011361)	GPM6A (ENSCPRG00005011345)	ENSCPRG00005011335	GLRA3 (ENSCPRG00005011331)	ENSCPRG00005011327	CEP44 (ENSCPRG00005011324)	FBXO8 (ENSCPRG00005011320)
Mammalia	ANCESTRAL SPECIES	1	ENSGT00940000154508.a.a	ENSGT00390000015511	ENSGT00390000003901	ENSGT00940000153232.a.b	ENSGT01050000246068	ENSGT00940000159063	ENSGT00940000158457	ENSGT00520000055589.d	ENSGT00390000006550	ENSGT00390000015545	ENSGT00940000158194	ENSGT00940000158376	ENSGT00940000162234	ENSGT00940000161922.i.b	ENSGT00410000025556.a.a.a.b	ENSGT00940000153676.a ##22	ENSGT00910000148572	ENSGT01030000234566.e.b.a.a	ENSGT00950000183045.C	ENSGT00940000153230.A	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000166667	ENSGT00940000158602	ENSGT00940000167698	ENSGT00390000006915.d	ENSGT00940000158368	ENSGT00940000154593.a.b	ENSGT00390000009873
Platypus	MODERN SPECIES	3	SLC25A4 (ENSOANG00000051146)	HELT (ENSOANG00000036820)	ACSL1 (ENSOANG00000010805)	ENSOANG00000036013	PRIMPOL (ENSOANG00000008783)	CASP3 (ENSOANG00000039253)	IRF2 (ENSOANG00000039047)	ENPP6 (ENSOANG00000009958)	ENSOANG00000047270	TRAPPC11 (ENSOANG00000000393)	ENSOANG00000006299	ING2 (ENSOANG00000050786)	ENSOANG00000048439	ENSOANG00000041602	ENSOANG00000048730	DCTD (ENSOANG00000049130) ##22	TENM3 (ENSOANG00000013681)	AGA (ENSOANG00000040053)	VEGFC (ENSOANG00000015685)	SPCS3 (ENSOANG00000015686)	ASB5 (ENSOANG00000041691)	ENSOANG00000045846	WDR17 (ENSOANG00000003590)	GPM6A (ENSOANG00000036971)	GLRA3 (ENSOANG00000005603)	HPGD (ENSOANG00000005602)	ENSOANG00000005601	FBXO8 (ENSOANG00000005600)	HAND2 (ENSOANG00000043556)	SCRG1 (ENSOANG00000011492)	SAP30 (ENSOANG00000011493)
Theria	ANCESTRAL SPECIES	6	ENSGT00940000154508.a.a	ENSGT00390000015511	ENSGT00390000003901	ENSGT00940000153232.a.b	ENSGT01050000246068	ENSGT00940000159063	ENSGT00940000158457	ENSGT00520000055589.d	ENSGT00390000006550	ENSGT00390000015545	ENSGT00940000158194	ENSGT00940000158376	ENSGT00940000162234	ENSGT00940000161922.i.b	ENSGT00410000025556.a.a.a.b	ENSGT00940000153676.a ##22	ENSGT00910000148572	ENSGT01030000234566.e.b.a.a	ENSGT00950000183045.C	ENSGT00940000153230.A	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000166667	ENSGT00940000158602	ENSGT00940000167698	ENSGT00390000006915.d	ENSGT00940000158368	ENSGT00940000154593.a.b	ENSGT00390000009873
Eutheria	ANCESTRAL SPECIES	2	ENSGT00940000154508.a.a	ENSGT00390000015511	ENSGT00390000003901	ENSGT00940000153232.a.b	ENSGT01050000246068	ENSGT00940000159063	ENSGT00940000158457	ENSGT00520000055589.d	ENSGT00390000006550	ENSGT00390000015545	ENSGT00940000158194	ENSGT00940000158376	ENSGT00940000162234	ENSGT00940000161922.i.b	ENSGT00410000025556.a.a.a.b	ENSGT00940000153676.a ##22	ENSGT00910000148572	ENSGT01030000234566.e.b.a.a	ENSGT00950000183045.C	ENSGT00940000153230.A	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000166667	ENSGT00940000158602	ENSGT00940000167698	ENSGT00390000006915.d	ENSGT00940000158368	ENSGT00940000154593.a.b	ENSGT00390000009873
Atlantogenata	ANCESTRAL SPECIES	84			ENSGT00390000015511	ENSGT00390000003901	ENSGT00940000153232.a.b	ENSGT00940000159063	ENSGT00940000158457	ENSGT00520000055589.d	ENSGT00390000006550	ENSGT00390000015545	ENSGT00940000158194	ENSGT00940000158376	ENSGT00940000162234	ENSGT00940000161922.i.b	ENSGT00410000025556.a.a.a.b	ENSGT00940000153676.a ##22	ENSGT01030000234566.e.b.a.a	ENSGT00950000183045.C	ENSGT00940000153230.A	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000163394	ENSGT00940000158368	ENSGT00940000154593.a.b	ENSGT00390000009873	ENSGT00940000158356	ENSGT00940000160772
Afrotheria	ANCESTRAL SPECIES	92			ENSGT00390000015511	ENSGT00390000003901	ENSGT00940000153232.a.b	ENSGT00940000159063	ENSGT00940000158457	ENSGT00520000055589.d	ENSGT00390000006550	ENSGT00390000015545	ENSGT00940000158194	ENSGT00940000158376	ENSGT00940000162234	ENSGT00940000161922.i.b	ENSGT00410000025556.a.a.a.b	ENSGT00940000153676.a ##22	ENSGT01030000234566.e.b.a.a	ENSGT00950000183045.C	ENSGT00940000153230.A	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000163394	ENSGT00940000158368	ENSGT00940000154593.a.b	ENSGT00390000009873	ENSGT00940000158356	ENSGT00940000160772
Afrotheria_a	ANCESTRAL SPECIES	95			ENSGT00390000015511	ENSGT00390000003901	ENSGT00940000153232.a.b	ENSGT00940000159063	ENSGT00940000158457	ENSGT00520000055589.d	ENSGT00390000006550	ENSGT00390000015545	ENSGT00940000158194	ENSGT00940000158376	ENSGT00940000162234	ENSGT00940000161922.i.b	ENSGT00410000025556.a.a.a.b	ENSGT00940000153676.a ##22	ENSGT01030000234566.e.b.a.a	ENSGT00950000183045.C	ENSGT00940000153230.A	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000163394	ENSGT00940000158368	ENSGT00940000154593.a.b	ENSGT00390000009873	ENSGT00940000158356	ENSGT00940000160772
Hyrax	MODERN SPECIES	2100																DCTD (ENSPCAG00000014245) ##22
Elephant	MODERN SPECIES	355			ENSLAFG00000021902	PRIMPOL (ENSLAFG00000013253)	CASP3 (ENSLAFG00000010657)	IRF2 (ENSLAFG00000000088)	ENPP6 (ENSLAFG00000012099)	STOX2 (ENSLAFG00000012095)	TRAPPC11 (ENSLAFG00000003032)	ENSLAFG00000003031	ING2 (ENSLAFG00000014542)	CDKN2AIP (ENSLAFG00000009239)	ENSLAFG00000007256	ENSLAFG00000007255	WWC2 (ENSLAFG00000007253)	DCTD (ENSLAFG00000018439) ##22	ENSLAFG00000015906	ENSLAFG00000029165	AGA (ENSLAFG00000005742)	NEIL3 (ENSLAFG00000014165)	VEGFC (ENSLAFG00000009460)	SPCS3 (ENSLAFG00000010193)	ASB5 (ENSLAFG00000014665)	SPATA4 (ENSLAFG00000016180)	WDR17 (ENSLAFG00000014654)	GPM6A (ENSLAFG00000009135)	ENSLAFG00000030784	ADAM29 (ENSLAFG00000026574)	GLRA3 (ENSLAFG00000009978)	HPGD (ENSLAFG00000001508)	CEP44 (ENSLAFG00000016042)
Tenrec	MODERN SPECIES	2576																DCTD (ENSETEG00000011505) ##22
Xenarthra	ANCESTRAL SPECIES	236			ENSGT00390000015511	ENSGT00390000003901	ENSGT00940000153232.a.b	ENSGT00940000159063	ENSGT00940000158457	ENSGT00520000055589.d	ENSGT00390000006550	ENSGT00390000015545	ENSGT00940000158194	ENSGT00940000158376	ENSGT00940000162234	ENSGT00940000161922.i.b	ENSGT00410000025556.a.a.a.b	ENSGT00940000153676.a ##22	ENSGT01030000234566.e.b.a.a
Sloth	MODERN SPECIES	2310																DCTD (ENSCHOG00000005524) ##22
Armadillo	MODERN SPECIES	4320	PRIMPOL (ENSDNOG00000006785)	CASP3 (ENSDNOG00000013931)	ENSDNOG00000043542	IRF2 (ENSDNOG00000048203)	ENSDNOG00000047773	ENPP6 (ENSDNOG00000044618)	STOX2 (ENSDNOG00000035487)	ENSDNOG00000047151	TRAPPC11 (ENSDNOG00000015134)	RWDD4 (ENSDNOG00000015132)	ING2 (ENSDNOG00000003916)	CDKN2AIP (ENSDNOG00000046935)	ENSDNOG00000017259	ENSDNOG00000017257	WWC2 (ENSDNOG00000017252)	DCTD (ENSDNOG00000000721) ##22	TENM3 (ENSDNOG00000002206)
Boreoeutheria	ANCESTRAL SPECIES	8	ENSGT00940000154508.a.a	ENSGT00390000015511	ENSGT00390000003901	ENSGT00940000153232.a.b	ENSGT01050000246068	ENSGT00940000159063	ENSGT00940000158457	ENSGT00520000055589.d	ENSGT00390000006550	ENSGT00390000015545	ENSGT00940000158194	ENSGT00940000158376	ENSGT00940000162234	ENSGT00940000161922.i.b	ENSGT00410000025556.a.a.a.b	ENSGT00940000153676.a ##22	ENSGT00910000148572	ENSGT01030000234566.e.b.a.a	ENSGT00950000183045.C	ENSGT00940000153230.A	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000166667	ENSGT00940000158602	ENSGT00940000167698	ENSGT00390000006915.d	ENSGT00940000163394	ENSGT00940000158368	ENSGT00940000154593.a.b
Euarchontoglires	ANCESTRAL SPECIES	9	ENSGT00940000154508.a.a	ENSGT00390000015511	ENSGT00390000003901	ENSGT00940000153232.a.b	ENSGT01050000246068	ENSGT00940000159063	ENSGT00940000158457	ENSGT00520000055589.d	ENSGT00390000006550	ENSGT00390000015545	ENSGT00940000158194	ENSGT00940000158376	ENSGT00940000162234	ENSGT00940000161922.i.b	ENSGT00410000025556.a.a.a.b	ENSGT00940000153676.a ##22	ENSGT00910000148572	ENSGT01030000234566.e.b.a.a	ENSGT00950000183045.C	ENSGT00940000153230.A	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000166667	ENSGT00940000158602	ENSGT00940000167698	ENSGT00390000006915.d	ENSGT00940000163394	ENSGT00940000158368	ENSGT00940000154593.a.b
Euarchontoglires_A	ANCESTRAL SPECIES	9	ENSGT00940000154508.a.a	ENSGT00390000015511	ENSGT00390000003901	ENSGT00940000153232.a.b	ENSGT01050000246068	ENSGT00940000159063	ENSGT00940000158457	ENSGT00520000055589.d	ENSGT00390000006550	ENSGT00390000015545	ENSGT00940000158194	ENSGT00940000158376	ENSGT00940000162234	ENSGT00940000161922.i.b	ENSGT00410000025556.a.a.a.b	ENSGT00940000153676.a ##22	ENSGT01030000234566.e.b.a.a	ENSGT00950000183045.C	ENSGT00940000153230.A	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000166667	ENSGT00940000158602	ENSGT00940000167698	ENSGT00390000006915.d	ENSGT00940000163394	ENSGT00940000158368	ENSGT00940000154593.a.b	ENSGT00390000009873
Tree shrew	MODERN SPECIES	1262																DCTD (ENSTBEG00000015910) ##22
Glires	ANCESTRAL SPECIES	8	ENSGT00940000154508.a.a	ENSGT00390000015511	ENSGT00390000003901	ENSGT00940000153232.a.b	ENSGT01050000246068	ENSGT00940000159063	ENSGT00940000158457	ENSGT00520000055589.d	ENSGT00390000006550	ENSGT00390000015545	ENSGT00940000158194	ENSGT00940000158376	ENSGT00940000162234	ENSGT00940000161922.i.b	ENSGT00410000025556.a.a.a.b	ENSGT00940000153676.a ##22	ENSGT01030000234566.e.b.a.a	ENSGT00950000183045.C	ENSGT00940000153230.A	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000166667	ENSGT00940000158602	ENSGT00940000167698	ENSGT00390000006915.d	ENSGT00940000163394	ENSGT00940000158368	ENSGT00940000154593.a.b	ENSGT00390000009873
Lagomorpha	ANCESTRAL SPECIES	114	ENSGT00940000160388	ENSGT00940000154508.a.a	ENSGT00390000015511	ENSGT00390000003901	ENSGT00940000153232.a.b	ENSGT00940000159063	ENSGT00940000158457	ENSGT00520000055589.d	ENSGT00390000006550	ENSGT00390000015545	ENSGT00940000158194	ENSGT00940000158376	ENSGT00940000162234	ENSGT00940000161922.i.b	ENSGT00410000025556.a.a.a.b	ENSGT00940000153676.a ##22	ENSGT01030000234566.e.b.a.a
Rabbit	MODERN SPECIES	11	ENSOCUG00000037022	ENSOCUG00000037500	CENPU (ENSOCUG00000003903)	ENSOCUG00000003897	CASP3 (ENSOCUG00000006627)	IRF2 (ENSOCUG00000009229)	ENPP6 (ENSOCUG00000011944)	STOX2 (ENSOCUG00000009718)	TRAPPC11 (ENSOCUG00000010179)	RWDD4 (ENSOCUG00000025497)	ING2 (ENSOCUG00000011812)	CDKN2AIP (ENSOCUG00000005491)	ENSOCUG00000033632	ENSOCUG00000034698	WWC2 (ENSOCUG00000016984)	DCTD (ENSOCUG00000004708) ##22	TENM3 (ENSOCUG00000007616)	ENSOCUG00000028118	ENSOCUG00000022735	AGA (ENSOCUG00000002031)	ENSOCUG00000022964	NEIL3 (ENSOCUG00000001040)	ENSOCUG00000023661	VEGFC (ENSOCUG00000017884)	ENSOCUG00000012211	ENSOCUG00000029741	ASB5 (ENSOCUG00000012592)	SPATA4 (ENSOCUG00000013569)	WDR17 (ENSOCUG00000015110)	GPM6A (ENSOCUG00000007631)	ENSOCUG00000037142
Pika	MODERN SPECIES	976																ENSOPRG00000014205 ##22
Rodentia	ANCESTRAL SPECIES	21	ENSGT00940000154508.a.a	ENSGT00390000015511	ENSGT00390000003901	ENSGT00940000153232.a.b	ENSGT01050000246068	ENSGT00940000159063	ENSGT00940000158457	ENSGT00520000055589.d	ENSGT00390000006550	ENSGT00390000015545	ENSGT00940000158194	ENSGT00940000158376	ENSGT00940000162234	ENSGT00940000161922.i.b	ENSGT00410000025556.a.a.a.b	ENSGT00940000153676.a ##22	ENSGT01030000234566.e.b.a.a	ENSGT00950000183045.C	ENSGT00940000153230.A	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000166667	ENSGT00940000158602	ENSGT00940000167698	ENSGT00390000006915.d	ENSGT00940000163394	ENSGT00940000158368	ENSGT00940000154593.a.b	ENSGT00390000009873
Rodentia_A	ANCESTRAL SPECIES	21	ENSGT00940000160388	ENSGT00940000154508.a.a	ENSGT00390000015511	ENSGT00390000003901	ENSGT00940000153232.a.b	ENSGT01050000246068	ENSGT00940000159063	ENSGT00940000158457	ENSGT00520000055589.d	ENSGT00390000006550	ENSGT00390000015545	ENSGT00940000158194	ENSGT00940000158376	ENSGT00940000162234	ENSGT00410000025556.a.a.a.b	ENSGT00940000153676.a ##22	ENSGT01030000234566.e.b.a.a	ENSGT00950000183045.C	ENSGT00940000153230.A	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000163394	ENSGT00940000158368	ENSGT00940000154593.a.b	ENSGT00390000009873	ENSGT00940000158356	ENSGT00940000160772
Hystricomorpha	ANCESTRAL SPECIES	21	ENSGT00940000154508.a.a	ENSGT00390000015511	ENSGT00390000003901	ENSGT00940000153232.a.b	ENSGT01050000246068	ENSGT00940000159063	ENSGT00940000158457	ENSGT00520000055589.d	ENSGT00390000006550	ENSGT00390000015545	ENSGT00940000158194	ENSGT00940000158376.m	ENSGT00940000158376.n	ENSGT00940000162234	ENSGT00410000025556.a.a.a.b	ENSGT00940000153676.a ##22	ENSGT01030000234566.e.b.a.a	ENSGT00950000183045.C	ENSGT00940000153230.A	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000163394	ENSGT00940000158368	ENSGT00940000154593.a.b	ENSGT00390000009873	ENSGT00940000158356	ENSGT00940000160772
Hystricomorpha_a	ANCESTRAL SPECIES	20	ENSGT00940000154622.a.a	ENSGT00940000160388	ENSGT00940000154508.a.a	ENSGT00390000015511	ENSGT00390000003901	ENSGT00940000153232.a.b	ENSGT01050000246068	ENSGT00940000159063	ENSGT00940000158457	ENSGT00520000055589.d	ENSGT00390000006550	ENSGT00390000015545	ENSGT00940000158194	ENSGT00940000158376.m	ENSGT00410000025556.a.a.a.b	ENSGT00940000153676.a ##22	ENSGT01030000234566.e.b.a.a	ENSGT00950000183045.C	ENSGT00940000153230.A	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000163394	ENSGT00940000158368	ENSGT00940000154593.a.b	ENSGT00390000009873	ENSGT00940000158356	ENSGT00940000160772
Guinea pig	MODERN SPECIES	36	SNX25 (ENSCPOG00000010122)	CFAP97 (ENSCPOG00000013081)	SLC25A4 (ENSCPOG00000005275)	HELT (ENSCPOG00000038449)	Acsl1 (ENSCPOG00000002734)	CENPU (ENSCPOG00000034557)	PRIMPOL (ENSCPOG00000002732)	ENSCPOG00000012511	IRF2 (ENSCPOG00000013097)	ENPP6 (ENSCPOG00000002554)	STOX2 (ENSCPOG00000036387)	TRAPPC11 (ENSCPOG00000011620)	ING2 (ENSCPOG00000012109)	CDKN2AIP (ENSCPOG00000035168)	WWC2 (ENSCPOG00000002473)	DCTD (ENSCPOG00000040207) ##22	TENM3 (ENSCPOG00000009475)	AGA (ENSCPOG00000002674)	NEIL3 (ENSCPOG00000003297)	VEGFC (ENSCPOG00000035891)	SPCS3 (ENSCPOG00000008544)	ASB5 (ENSCPOG00000013084)	SPATA4 (ENSCPOG00000024215)	WDR17 (ENSCPOG00000019958)	GPM6A (ENSCPOG00000030014)	GLRA3 (ENSCPOG00000012157)	Hpgd (ENSCPOG00000001979)	CEP44 (ENSCPOG00000013247)	FBXO8 (ENSCPOG00000010347)	HAND2 (ENSCPOG00000036252)	SCRG1 (ENSCPOG00000001738)
Hystricomorpha_b	ANCESTRAL SPECIES	30	ENSGT00940000154622.a.a	ENSGT00940000160388	ENSGT00940000154508.a.a	ENSGT00390000015511	ENSGT00390000003901	ENSGT00940000153232.a.b	ENSGT01050000246068	ENSGT00940000159063	ENSGT00940000158457	ENSGT00520000055589.d	ENSGT00390000006550	ENSGT00390000015545	ENSGT00940000158194	ENSGT00940000158376.m	ENSGT00410000025556.a.a.a.b	ENSGT00940000153676.a ##22	ENSGT01030000234566.e.b.a.a	ENSGT00950000183045.C	ENSGT00940000153230.A	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000163394	ENSGT00940000158368	ENSGT00940000154593.a.b	ENSGT00390000009873	ENSGT00940000158356	ENSGT00940000160772
Degu	MODERN SPECIES	155	PRIMPOL (ENSODEG00000004070)	ENSODEG00000005237	ENSODEG00000005217	ENSODEG00000005179	ENSODEG00000005107	ENSODEG00000019198	ENPP6 (ENSODEG00000005075)	STOX2 (ENSODEG00000005044)	TRAPPC11 (ENSODEG00000004866)	ENSODEG00000004702	ENSODEG00000019059	ING2 (ENSODEG00000004668)	ENSODEG00000004569	ENSODEG00000005481	ENSODEG00000005460	DCTD (ENSODEG00000005367) ##22	ENSODEG00000005312	ENSODEG00000005299	ENSODEG00000005279	PAG1 (ENSODEG00000005249)	ZNF704 (ENSODEG00000005088)	ZBTB10 (ENSODEG00000005049)	TPD52 (ENSODEG00000005732)	MRPS28 (ENSODEG00000005701)	HEY1 (ENSODEG00000005561)	ENSODEG00000005540	ENSODEG00000005520	ENSODEG00000005504	ENSODEG00000005397	IL7 (ENSODEG00000005375)	ZC2HC1A (ENSODEG00000005317)
Long-tailed chinchilla	MODERN SPECIES	110	CFAP97 (ENSCLAG00000013411)	SLC25A4 (ENSCLAG00000012368)	HELT (ENSCLAG00000013564)	ACSL1 (ENSCLAG00000012854)	CENPU (ENSCLAG00000011512)	PRIMPOL (ENSCLAG00000012642)	ENSCLAG00000014245	IRF2 (ENSCLAG00000015934)	ENPP6 (ENSCLAG00000012884)	STOX2 (ENSCLAG00000015001)	TRAPPC11 (ENSCLAG00000016148)	RWDD4 (ENSCLAG00000014148)	ING2 (ENSCLAG00000014843)	CDKN2AIP (ENSCLAG00000012072)	WWC2 (ENSCLAG00000012066)	DCTD (ENSCLAG00000012757) ##22	TENM3 (ENSCLAG00000013736)	AGA (ENSCLAG00000014580)	NEIL3 (ENSCLAG00000015661)	VEGFC (ENSCLAG00000013066)	SPCS3 (ENSCLAG00000015410)	ASB5 (ENSCLAG00000011261)	SPATA4 (ENSCLAG00000011629)	WDR17 (ENSCLAG00000016000)	GPM6A (ENSCLAG00000017285)	ADAM29 (ENSCLAG00000017816)	GLRA3 (ENSCLAG00000014561)	HPGD (ENSCLAG00000015466)	CEP44 (ENSCLAG00000016227)	FBXO8 (ENSCLAG00000012922)	HAND2 (ENSCLAG00000014433)
Naked mole-rat female	MODERN SPECIES	25	ENSHGLG00000046299	ACSL1 (ENSHGLG00000003274)	ENSHGLG00000005399	PRIMPOL (ENSHGLG00000003784)	ENSHGLG00000032894	IRF2 (ENSHGLG00000034854)	ENPP6 (ENSHGLG00000018912)	STOX2 (ENSHGLG00000016104)	TRAPPC11 (ENSHGLG00000015695)	RWDD4 (ENSHGLG00000017188)	ING2 (ENSHGLG00000009825)	CDKN2AIP (ENSHGLG00000034491)	ENSHGLG00000018243	ENSHGLG00000050499	WWC2 (ENSHGLG00000018666)	DCTD (ENSHGLG00000018838) ##22	ENSHGLG00000003748	ENSHGLG00000006389	ADH5 (ENSHGLG00000036012)	ENSHGLG00000000109	ENSHGLG00000005432	ENSHGLG00000020591	ENSHGLG00000034460	ENSHGLG00000036943	ENSHGLG00000008181	ENSHGLG00000006643	ENSHGLG00000020432	ENSHGLG00000021433	ENSHGLG00000040987	VEGFC (ENSHGLG00000010268)	ENSHGLG00000035994
Sciuridae	ANCESTRAL SPECIES	29	ENSGT00940000154508.a.a	ENSGT00390000015511	ENSGT00390000003901	ENSGT00940000153232.a.b	ENSGT00940000159063	ENSGT00940000158457	ENSGT00520000055589.d	ENSGT00390000006550	ENSGT00390000015545	ENSGT00940000158194	ENSGT00940000158376	ENSGT00940000162234.cb	ENSGT00940000162234.bb	ENSGT00940000161922.i.b	ENSGT00410000025556.a.a.a.b	ENSGT00940000153676.a ##22	ENSGT01030000234566.e.b.a.a	ENSGT00950000183045.C	ENSGT00940000153230.A	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000163394	ENSGT00940000158368	ENSGT00940000154593.a.b	ENSGT00390000009873	ENSGT00940000158356	ENSGT00940000160772
Marmotini	ANCESTRAL SPECIES	30	ENSGT00940000160388	ENSGT00940000154508.a.a	ENSGT00390000015511	ENSGT00390000003901	ENSGT00940000153232.a.b.y.a	ENSGT00940000159063	ENSGT00940000158457	ENSGT00520000055589.d	ENSGT00390000006550	ENSGT00390000015545.u	ENSGT00940000158194	ENSGT00940000158376	ENSGT00940000161922.i.b.f	ENSGT00940000161922.i.b.e	ENSGT00410000025556.a.a.a.b	ENSGT00940000153676.a ##22	ENSGT01030000234566.e.b.a.a	ENSGT00950000183045.C	ENSGT00940000153230.A	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000163394	ENSGT00940000158368	ENSGT00940000154593.a.b	ENSGT00390000009873	ENSGT00940000158356	ENSGT00940000160772
Alpin marmot	MODERN SPECIES	17	HELT (ENSMMMG00000012257)	ACSL1 (ENSMMMG00000012277)	ENSMMMG00000012403	ENSMMMG00000012420	ENSMMMG00000012424	IRF2 (ENSMMMG00000012444)	ENPP6 (ENSMMMG00000012465)	STOX2 (ENSMMMG00000012483)	TRAPPC11 (ENSMMMG00000012528)	ENSMMMG00000012560	ING2 (ENSMMMG00000012572)	CDKN2AIP (ENSMMMG00000012577)	ENSMMMG00000012586	ENSMMMG00000012589	WWC2 (ENSMMMG00000012593)	DCTD (ENSMMMG00000012615) ##22	TENM3 (ENSMMMG00000012655)	AGA (ENSMMMG00000012785)	NEIL3 (ENSMMMG00000012802)	VEGFC (ENSMMMG00000012828)	ENSMMMG00000012853	ASB5 (ENSMMMG00000012874)	SPATA4 (ENSMMMG00000012880)	WDR17 (ENSMMMG00000012914)	GPM6A (ENSMMMG00000013073)	ADAM29 (ENSMMMG00000013127)	ENSMMMG00000013158	GLRA3 (ENSMMMG00000013188)	HPGD (ENSMMMG00000014081)	CEP44 (ENSMMMG00000014097)	FBXO8 (ENSMMMG00000014117)
Marmotini_b	ANCESTRAL SPECIES	72	ENSGT00390000015511	ENSGT00390000003901	ENSGT00940000153232.a.b.y.a	ENSGT00940000159063	ENSGT00940000158457	ENSGT00520000055589.d	ENSGT00390000006550	ENSGT00390000015545.u	ENSGT00940000158194	ENSGT00940000158376	ENSGT00940000162234.cb	ENSGT00940000162234.bb	ENSGT00940000161922.i.b.f	ENSGT00940000161922.i.b.e	ENSGT00410000025556.a.a.a.b	ENSGT00940000153676.a ##22	ENSGT01030000234566.e.b.a.a
Squirrel	MODERN SPECIES	154	HELT (ENSSTOG00000009054)	ACSL1 (ENSSTOG00000009009)	CENPU (ENSSTOG00000034632)	PRIMPOL (ENSSTOG00000004912)	ENSSTOG00000003865	IRF2 (ENSSTOG00000003228)	ENPP6 (ENSSTOG00000016502)	STOX2 (ENSSTOG00000016497)	TRAPPC11 (ENSSTOG00000013088)	ENSSTOG00000013086	ING2 (ENSSTOG00000014291)	CDKN2AIP (ENSSTOG00000027051)	ENSSTOG00000027686	ENSSTOG00000027326	WWC2 (ENSSTOG00000014261)	DCTD (ENSSTOG00000005462) ##22	TENM3 (ENSSTOG00000012468)	GDF10 (ENSSTOG00000025106)	GDF2 (ENSSTOG00000028739)	RBP3 (ENSSTOG00000023149)	ZNF488 (ENSSTOG00000015147)	ENSSTOG00000002858	ENSSTOG00000022358	ALOX5 (ENSSTOG00000015946)	OR13A1 (ENSSTOG00000032168)	ENSSTOG00000032789	ENSSTOG00000034712
Arctic ground squirrel	MODERN SPECIES	231		ACSL1 (ENSUPAG00010001148)	CENPU (ENSUPAG00010001999)	ENSUPAG00010002010	ENSUPAG00010002027	IRF2 (ENSUPAG00010002037)	ENPP6 (ENSUPAG00010002074)	STOX2 (ENSUPAG00010002101)	TRAPPC11 (ENSUPAG00010002107)	ENSUPAG00010002132	ING2 (ENSUPAG00010002161)	CDKN2AIP (ENSUPAG00010002169)	ENSUPAG00010002183	ENSUPAG00010002187	WWC2 (ENSUPAG00010002189)	DCTD (ENSUPAG00010002217) ##22	TENM3 (ENSUPAG00010002250)
Eurasian red squirrel	DUPLICATION
Eurasian red squirrel	MODERN SPECIES	14	ACSL1 (ENSSVLG00005003813)	ENSSVLG00005003774	PRIMPOL (ENSSVLG00005003718)	CASP3 (ENSSVLG00005003677)	ENSSVLG00005003654	IRF2 (ENSSVLG00005003630)	ENPP6 (ENSSVLG00005003610)	ENSSVLG00005003590	TRAPPC11 (ENSSVLG00005003499)	RWDD4 (ENSSVLG00005003423)	ING2 (ENSSVLG00005003400)	CDKN2AIP (ENSSVLG00005003382)	ENSSVLG00005003376	ENSSVLG00005003361	WWC2 (ENSSVLG00005003319)	DCTD (ENSSVLG00005003300) ##22	TENM3 (ENSSVLG00005003236)	AGA (ENSSVLG00005003168)	NEIL3 (ENSSVLG00005003141)	VEGFC (ENSSVLG00005003095)	ENSSVLG00005003081	ENSSVLG00005003064	ASB5 (ENSSVLG00005002993)	SPATA4 (ENSSVLG00005002939)	WDR17 (ENSSVLG00005002773)	ENSSVLG00005002719	GPM6A (ENSSVLG00005002667)	ENSSVLG00005002637	ENSSVLG00005002611	GLRA3 (ENSSVLG00005002568)	ENSSVLG00005002462
Eurasian red squirrel	MODERN SPECIES	12	ENSSVLG00005009098	ENSSVLG00005009269	SLC16A11 (ENSSVLG00005009286)	SLC16A13 (ENSSVLG00005009320)	BCL6B (ENSSVLG00005009352)	C17orf49 (ENSSVLG00005009498)	RNASEK (ENSSVLG00005009408)	ALOX12 (ENSSVLG00005009559)	ENSSVLG00005009598	ENSSVLG00005009686	ENSSVLG00005009703	ENSSVLG00005009734	OR3A1 (ENSSVLG00005009765)	ENSSVLG00005009786	ENSSVLG00005009824	ENSSVLG00005009837 ##22	ENSSVLG00005009906	OR1P1 (ENSSVLG00005009924)	ENSSVLG00005009983	ENSSVLG00005010022	ENSSVLG00005010059	ENSSVLG00005010077	ALOX15 (ENSSVLG00005010118)	PELP1 (ENSSVLG00005010259)	ARRB2 (ENSSVLG00005010313)	MED11 (ENSSVLG00005010388)	CXCL16 (ENSSVLG00005010429)	ZMYND15 (ENSSVLG00005010510)	ENSSVLG00005010838	ENSSVLG00005010924	VMO1 (ENSSVLG00005010980)
Rodentia_B	ANCESTRAL SPECIES	24	ENSGT00940000160388	ENSGT00940000154508.a.a	ENSGT00390000015511	ENSGT00390000003901	ENSGT00940000153232.a.b	ENSGT00940000159063	ENSGT00940000158457	ENSGT00520000055589.d	ENSGT00390000006550	ENSGT00390000015545	ENSGT00940000158194	ENSGT00940000158376	ENSGT00940000162234	ENSGT00940000161922.i.b	ENSGT00410000025556.a.a.a.b	ENSGT00940000153676.a ##22	ENSGT01030000234566.e.b.a.a	ENSGT00950000183045.C	ENSGT00940000153230.A	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000166667	ENSGT00940000158602	ENSGT00940000167698	ENSGT00390000006915.d	ENSGT00940000163394	ENSGT00940000158368	ENSGT00940000154593.a.b	ENSGT00390000009873
Myomorpha	ANCESTRAL SPECIES	29	ENSGT00940000160388	ENSGT00940000154508.a.a	ENSGT00390000015511	ENSGT00390000003901	ENSGT00940000153232.a.b	ENSGT00940000159063	ENSGT00940000158457	ENSGT00520000055589.d	ENSGT00390000006550	ENSGT00390000015545	ENSGT00940000158194	ENSGT00940000158376	ENSGT00940000162234	ENSGT00940000161922.i.b	ENSGT00410000025556.a.a.a.b	ENSGT00940000153676.a ##22	ENSGT01030000234566.e.b.a.a	ENSGT00950000183045.C	ENSGT00940000153230.A	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000166667	ENSGT00940000158602	ENSGT00940000167698	ENSGT00390000006915.d	ENSGT00940000163394	ENSGT00940000158368	ENSGT00940000154593.a.b	ENSGT00390000009873
Muroidea	ANCESTRAL SPECIES	26	ENSGT00940000160388	ENSGT00940000154508.a.a	ENSGT00390000015511	ENSGT00390000003901	ENSGT00940000153232.a.b	ENSGT00940000159063	ENSGT00940000158457	ENSGT00520000055589.d	ENSGT00390000006550	ENSGT00390000015545	ENSGT00940000158194	ENSGT00940000158376	ENSGT00940000162234	ENSGT00940000161922.i.b	ENSGT00410000025556.a.a.a.b	ENSGT00940000153676.a ##22	ENSGT01030000234566.e.b.a.a	ENSGT00950000183045.C	ENSGT00940000153230.A	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000166667	ENSGT00940000158602	ENSGT00940000167698	ENSGT00390000006915.d	ENSGT00940000163394	ENSGT00940000158368	ENSGT00940000154593.a.b	ENSGT00390000009873
Muroidea_A	ANCESTRAL SPECIES	26	ENSGT00940000154508.a.a	ENSGT00390000015511	ENSGT00390000003901	ENSGT00940000153232.a.b	ENSGT00940000159063	ENSGT00940000158457	ENSGT00520000055589.d	ENSGT00390000006550	ENSGT00390000015545	ENSGT00940000158194	ENSGT00940000158376	ENSGT00940000161922.i.b.h	ENSGT00940000162234	ENSGT00940000161922.i.b.g	ENSGT00410000025556.a.a.a.b	ENSGT00940000153676.a ##22	ENSGT01030000234566.e.b.a.a	ENSGT00950000183045.C	ENSGT00940000153230.A	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000166667	ENSGT00940000158602	ENSGT00940000167698	ENSGT00390000006915.d	ENSGT00940000163394	ENSGT00940000158368	ENSGT00940000154593.a.b	ENSGT00390000009873
Cricetidae	ANCESTRAL SPECIES	23	ENSGT00940000160388	ENSGT00940000154508.a.a	ENSGT00390000015511	ENSGT00390000003901	ENSGT00940000153232.a.b	ENSGT00940000159063	ENSGT00940000158457	ENSGT00520000055589.d	ENSGT00390000006550	ENSGT00390000015545	ENSGT00940000158194	ENSGT00940000158376	ENSGT00940000162234	ENSGT00940000161922.i.b.g	ENSGT00410000025556.a.a.a.b	ENSGT00940000153676.a ##22	ENSGT01030000234566.e.b.a.a	ENSGT00950000183045.C	ENSGT00940000153230.A	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000166667	ENSGT00940000158602	ENSGT00940000167698	ENSGT00390000006915.d	ENSGT00940000163394	ENSGT00940000158368	ENSGT00940000154593.a.b	ENSGT00390000009873
Cricetidae_B	ANCESTRAL SPECIES	17	ENSGT00940000160388	ENSGT00940000154508.a.a	ENSGT00390000015511	ENSGT00390000003901	ENSGT00940000153232.a.b	ENSGT00940000159063	ENSGT00940000158457	ENSGT00520000055589.d	ENSGT00390000006550	ENSGT00390000015545	ENSGT00940000158194	ENSGT00940000158376	ENSGT00940000162234	ENSGT00940000161922.i.b.g	ENSGT00410000025556.a.a.a.b	ENSGT00940000153676.a ##22	ENSGT01030000234566.e.b.a.a	ENSGT00950000183045.C	ENSGT00940000153230.A	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000166667	ENSGT00940000158602	ENSGT00940000167698	ENSGT00390000006915.d	ENSGT00940000163394	ENSGT00940000158368	ENSGT00940000154593.a.b	ENSGT00390000009873
Northern American deer mouse	MODERN SPECIES	8	Acsl1 (ENSPEMG00000013337)	Cenpu (ENSPEMG00000008812)	Primpol (ENSPEMG00000014411)	Casp3 (ENSPEMG00000027833)	Irf2 (ENSPEMG00000018720)	Enpp6 (ENSPEMG00000001747)	ENSPEMG00000025263	Stox2 (ENSPEMG00000006925)	ENSPEMG00000009669	Trappc11 (ENSPEMG00000011449)	Rwdd4a (ENSPEMG00000015398)	ENSPEMG00000025926	Ing2 (ENSPEMG00000000125)	Cdkn2aip (ENSPEMG00000026992)	Wwc2 (ENSPEMG00000029499)	Dctd (ENSPEMG00000011762) ##22	Tenm3 (ENSPEMG00000017497)	ENSPEMG00000029482	ENSPEMG00000027794	Aga (ENSPEMG00000025796)	Neil3 (ENSPEMG00000016548)	Vegfc (ENSPEMG00000017806)	Spcs3 (ENSPEMG00000029258)	Asb5 (ENSPEMG00000000734)	Spata4 (ENSPEMG00000006534)	Wdr17 (ENSPEMG00000012332)	Gpm6a (ENSPEMG00000029351)	ENSPEMG00000024737	ENSPEMG00000028325	Adam29 (ENSPEMG00000013490)	Glra3 (ENSPEMG00000028664)
Prairie vole	MODERN SPECIES	356	Cenpu (ENSMOCG00000004846)	Primpol (ENSMOCG00000006815)	Casp3 (ENSMOCG00000011756)	Irf2 (ENSMOCG00000013068)	Enpp6 (ENSMOCG00000021517)	Stox2 (ENSMOCG00000006233)	Trappc11 (ENSMOCG00000015798)	Rwdd4a (ENSMOCG00000002163)	ENSMOCG00000004967	Ing2 (ENSMOCG00000005078)	Cdkn2aip (ENSMOCG00000016713)	ENSMOCG00000008252	Cldn22 (ENSMOCG00000006954)	ENSMOCG00000003820	ENSMOCG00000005387	Dctd (ENSMOCG00000015038) ##22	Tenm3 (ENSMOCG00000020342)	Aga (ENSMOCG00000014844)	ENSMOCG00000018728	ENSMOCG00000007262	Vegfc (ENSMOCG00000021548)	Spcs3 (ENSMOCG00000022872)	Asb5 (ENSMOCG00000022930)	Spata4 (ENSMOCG00000003714)	ENSMOCG00000015690	ENSMOCG00000016833	ENSMOCG00000020494	Gpm6a (ENSMOCG00000021010)
Cricetinae	ANCESTRAL SPECIES	25	ENSGT00940000160388	ENSGT00940000154508.a.a	ENSGT00390000015511	ENSGT00390000003901	ENSGT00940000153232.a.b	ENSGT00940000159063	ENSGT00940000158457	ENSGT00520000055589.d	ENSGT00390000006550	ENSGT00390000015545	ENSGT00940000158194	ENSGT00940000158376	ENSGT00940000161922.i.b.h	ENSGT00940000161922.i.b.g	ENSGT00410000025556.a.a.a.b	ENSGT00940000153676.a ##22	ENSGT01030000234566.e.b.a.a	ENSGT00950000183045.C	ENSGT00940000153230.A	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000166667	ENSGT00940000158602	ENSGT00940000167698	ENSGT00390000006915.d
Chinese hamster chok1gshd	MODERN SPECIES	1	Acsl1 (ENSCGRG00001012242)	Cenpu (ENSCGRG00001024299)	Primpol (ENSCGRG00001016107)	CASP 3 (ENSCGRG00001015469)	Irf2 (ENSCGRG00001014578)	ENSCGRG00001014136	Enpp6 (ENSCGRG00001013812)	Stox2 (ENSCGRG00001013096)	ENSCGRG00001003901	Trappc11 (ENSCGRG00001018304)	Rwdd4a (ENSCGRG00001018945)	Ing2 (ENSCGRG00001017801)	Cdkn2aip (ENSCGRG00001016194)	ENSCGRG00001015210	Wwc2 (ENSCGRG00001016882)	Dctd (ENSCGRG00001016053) ##22	Tenm3 (ENSCGRG00001021107)	Aga (ENSCGRG00001019108)	Neil3 (ENSCGRG00001018596)	Vegfc (ENSCGRG00001014310)	Spcs3 (ENSCGRG00001013944)	Asb5 (ENSCGRG00001013169)	Spata4 (ENSCGRG00001012374)	Wdr17 (ENSCGRG00001010983)	Gpm6a (ENSCGRG00001007305)	ENSCGRG00001004858
Golden Hamster	MODERN SPECIES	624	Acsl1 (ENSMAUG00000008881)	Cenpu (ENSMAUG00000006619)	Casp3 (ENSMAUG00000004837)	Irf2 (ENSMAUG00000009382)	Enpp6 (ENSMAUG00000007201)	Stox2 (ENSMAUG00000019263)	Trappc11 (ENSMAUG00000009056)	Rwdd4a (ENSMAUG00000001169)	Ing2 (ENSMAUG00000012553)	ENSMAUG00000019930	Cldn24 (ENSMAUG00000022185)	Cldn22 (ENSMAUG00000009702)	ENSMAUG00000019841	ENSMAUG00000020907	ENSMAUG00000018016	Dctd (ENSMAUG00000015286) ##22	ENSMAUG00000019767	ENSMAUG00000010963	ENSMAUG00000018923	Vegfc (ENSMAUG00000022111)	Spcs3 (ENSMAUG00000010908)	Asb5 (ENSMAUG00000020509)	Spata4 (ENSMAUG00000020002)	ENSMAUG00000011217	ENSMAUG00000021673	ENSMAUG00000021221	ENSMAUG00000001140
Murinae	ANCESTRAL SPECIES	23	ENSGT00940000160388	ENSGT00940000154508.a.a	ENSGT00390000015511	ENSGT00390000003901	ENSGT00940000153232.a.b	ENSGT00940000159063	ENSGT00940000158457	ENSGT00520000055589.d	ENSGT00390000006550	ENSGT00390000015545	ENSGT00940000158194	ENSGT00940000158376	ENSGT00940000161922.i.b.h	ENSGT00940000161922.i.b.g	ENSGT00410000025556.a.a.a.b	ENSGT00940000153676.a ##22	ENSGT01030000234566.e.b.a.a	ENSGT00950000183045.C	ENSGT00940000153230.A	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000163394	ENSGT00940000158368	ENSGT00940000154593.a.b	ENSGT00390000009873	ENSGT00940000158356	ENSGT00940000160772
Mus	ANCESTRAL SPECIES	6	ENSGT00940000160388	ENSGT00940000154508.a.a	ENSGT00390000015511	ENSGT00390000003901	ENSGT00940000153232.a.b	ENSGT00940000159063	ENSGT00940000158457	ENSGT00520000055589.d	ENSGT00390000006550	ENSGT00390000015545	ENSGT00940000158194	ENSGT00940000158376	ENSGT00940000161922.i.b.h	ENSGT00940000161922.i.b.g	ENSGT00410000025556.a.a.a.b	ENSGT00940000153676.a ##22	ENSGT01030000234566.e.b.a.a	ENSGT00950000183045.C	ENSGT00940000153230.A	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000163394	ENSGT00940000158368	ENSGT00940000154593.a.b	ENSGT00390000009873	ENSGT00940000158356	ENSGT00940000160772
Mus_A	ANCESTRAL SPECIES	8	ENSGT00940000160388	ENSGT00940000154508.a.a	ENSGT00390000015511	ENSGT00390000003901	ENSGT00940000153232.a.b	ENSGT00940000159063	ENSGT00940000158457	ENSGT00520000055589.d	ENSGT00390000006550	ENSGT00390000015545	ENSGT00940000158194	ENSGT00940000158376	ENSGT00940000161922.i.b.h	ENSGT00940000161922.i.b.g	ENSGT00410000025556.a.a.a.b	ENSGT00940000153676.a ##22	ENSGT01030000234566.e.b.a.a	ENSGT00900000143444	ENSGT00950000183045.C	ENSGT00940000153230.A	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000163394	ENSGT00940000158368	ENSGT00940000154593.a.b	ENSGT00390000009873	ENSGT00940000158356
Ryukyu mouse	MODERN SPECIES	17	Cenpu (MGP_CAROLIEiJ_G0031033)	MGP_CAROLIEiJ_G0031034	Casp3 (MGP_CAROLIEiJ_G0031035)	Irf2 (MGP_CAROLIEiJ_G0031036)	Enpp6 (MGP_CAROLIEiJ_G0031037)	Stox2 (MGP_CAROLIEiJ_G0031038)	MGP_CAROLIEiJ_G0031039	Trappc11 (MGP_CAROLIEiJ_G0031040)	Rwdd4a (MGP_CAROLIEiJ_G0031041)	Ing2 (MGP_CAROLIEiJ_G0031042)	MGP_CAROLIEiJ_G0031043	Cdkn2aip (MGP_CAROLIEiJ_G0031044)	MGP_CAROLIEiJ_G0031045	MGP_CAROLIEiJ_G0031046	Wwc2 (MGP_CAROLIEiJ_G0031047)	Dctd (MGP_CAROLIEiJ_G0031048) ##22	Tenm3 (MGP_CAROLIEiJ_G0031049)	MGP_CAROLIEiJ_G0031050	Aga (MGP_CAROLIEiJ_G0031051)	Neil3 (MGP_CAROLIEiJ_G0031052)	Vegfc (MGP_CAROLIEiJ_G0031053)	Spcs3 (MGP_CAROLIEiJ_G0031054)	Asb5 (MGP_CAROLIEiJ_G0031055)	Spata4 (MGP_CAROLIEiJ_G0031056)	Wdr17 (MGP_CAROLIEiJ_G0031057)	Gpm6a (MGP_CAROLIEiJ_G0031058)	MGP_CAROLIEiJ_G0031059	Glra3 (MGP_CAROLIEiJ_G0031060)	Hpgd (MGP_CAROLIEiJ_G0031061)	Cep44 (MGP_CAROLIEiJ_G0031062)	Fbxo8 (MGP_CAROLIEiJ_G0031063)
Mus_B	ANCESTRAL SPECIES	6	ENSGT00940000160388	ENSGT00940000154508.a.a	ENSGT00390000015511	ENSGT00390000003901	ENSGT00940000153232.a.b	ENSGT00940000159063	ENSGT00940000158457	ENSGT00520000055589.d	ENSGT00390000006550	ENSGT00390000015545	ENSGT00940000158194	ENSGT00940000158376	ENSGT00940000161922.i.b.h	ENSGT00940000161922.i.b.g	ENSGT00410000025556.a.a.a.b	ENSGT00940000153676.a ##22	ENSGT01030000234566.e.b.a.a	ENSGT00900000143444	ENSGT00950000183045.C	ENSGT00940000153230.A	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000163394	ENSGT00940000158368	ENSGT00940000154593.a.b	ENSGT00390000009873	ENSGT00940000158356
Mouse	MODERN SPECIES	17	Helt (ENSMUSG00000047171)	Acsl1 (ENSMUSG00000018796)	Cenpu (ENSMUSG00000031629)	Primpol (ENSMUSG00000038225)	Casp3 (ENSMUSG00000031628)	Irf2 (ENSMUSG00000031627)	Enpp6 (ENSMUSG00000038173)	Stox2 (ENSMUSG00000038143)	Trappc11 (ENSMUSG00000038102)	Rwdd4a (ENSMUSG00000031568)	Ing2 (ENSMUSG00000063049)	Cdkn2aip (ENSMUSG00000038069)	Cldn24 (ENSMUSG00000061974)	Wwc2 (ENSMUSG00000031563)	Cldn22 (ENSMUSG00000038064)	Dctd (ENSMUSG00000031562) ##22	Tenm3 (ENSMUSG00000031561)	Aga (ENSMUSG00000031521)	Neil3 (ENSMUSG00000039396)	Vegfc (ENSMUSG00000031520)	Spcs3 (ENSMUSG00000054408)	Asb5 (ENSMUSG00000031519)	Spata4 (ENSMUSG00000031518)	Wdr17 (ENSMUSG00000039375)	Gpm6a (ENSMUSG00000031517)	Adam29 (ENSMUSG00000046258)	Glra3 (ENSMUSG00000038257)	Hpgd (ENSMUSG00000031613)	Cep44 (ENSMUSG00000038215)	Fbxo8 (ENSMUSG00000038206)	Hand2 (ENSMUSG00000038193)
Mus_C	ANCESTRAL SPECIES	5	ENSGT00940000160388	ENSGT00940000154508.a.a	ENSGT00390000015511	ENSGT00390000003901	ENSGT00940000153232.a.b	ENSGT00940000159063	ENSGT00940000158457	ENSGT00520000055589.d	ENSGT00390000006550	ENSGT00390000015545	ENSGT00940000158194	ENSGT00940000158376	ENSGT00940000161922.i.b.h	ENSGT00940000161922.i.b.g	ENSGT00410000025556.a.a.a.b	ENSGT00940000153676.a ##22	ENSGT01030000234566.e.b.a.a	ENSGT00900000143444	ENSGT00950000183045.C	ENSGT00940000153230.A	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000163394	ENSGT00940000158368	ENSGT00940000154593.a.b	ENSGT00390000009873	ENSGT00940000158356
Steppe mouse	MODERN SPECIES	3357							Enpp6 (ENSMSIG00000030973)	Stox2 (ENSMSIG00000030963)	Trappc11 (ENSMSIG00000030947)	Rwdd4a (ENSMSIG00000030943)	Ing2 (ENSMSIG00000030942)	Cdkn2aip (ENSMSIG00000030940)	ENSMSIG00000030937	Cldn24 (ENSMSIG00000030935)	Wwc2 (ENSMSIG00000030922)	Dctd (ENSMSIG00000030915) ##22	Tenm3 (ENSMSIG00000030896)	ENSMSIG00000030889	ENSMSIG00000030886
spretus	MODERN SPECIES	17	Primpol (MGP_SPRETEiJ_G0032148)	Casp3 (MGP_SPRETEiJ_G0032149)	Irf2 (MGP_SPRETEiJ_G0032150)	Enpp6 (MGP_SPRETEiJ_G0032151)	Stox2 (MGP_SPRETEiJ_G0032152)	MGP_SPRETEiJ_G0032153	Trappc11 (MGP_SPRETEiJ_G0032154)	Rwdd4a (MGP_SPRETEiJ_G0032155)	Ing2 (MGP_SPRETEiJ_G0032156)	MGP_SPRETEiJ_G0032157	Cdkn2aip (MGP_SPRETEiJ_G0032158)	MGP_SPRETEiJ_G0032159	MGP_SPRETEiJ_G0032160	Cldn22 (MGP_SPRETEiJ_G0032161)	Wwc2 (MGP_SPRETEiJ_G0032162)	Dctd (MGP_SPRETEiJ_G0032163) ##22	Tenm3 (MGP_SPRETEiJ_G0032164)	MGP_SPRETEiJ_G0032165	Aga (MGP_SPRETEiJ_G0032166)	Neil3 (MGP_SPRETEiJ_G0032167)	Vegfc (MGP_SPRETEiJ_G0032168)	Spcs3 (MGP_SPRETEiJ_G0032169)	Asb5 (MGP_SPRETEiJ_G0032170)	Spata4 (MGP_SPRETEiJ_G0032171)	Wdr17 (MGP_SPRETEiJ_G0032172)	Gpm6a (MGP_SPRETEiJ_G0032173)	Adam29 (MGP_SPRETEiJ_G0032174)	Glra3 (MGP_SPRETEiJ_G0032175)	Hpgd (MGP_SPRETEiJ_G0032176)	Cep44 (MGP_SPRETEiJ_G0032177)	Fbxo8 (MGP_SPRETEiJ_G0032178)
Shrew mouse	MODERN SPECIES	10	Helt (MGP_PahariEiJ_G0021499)	Acsl1 (MGP_PahariEiJ_G0021500)	Cenpu (MGP_PahariEiJ_G0021501)	Primpol (MGP_PahariEiJ_G0021502)	Casp3 (MGP_PahariEiJ_G0021503)	Irf2 (MGP_PahariEiJ_G0021504)	Enpp6 (MGP_PahariEiJ_G0021505)	Stox2 (MGP_PahariEiJ_G0021506)	Trappc11 (MGP_PahariEiJ_G0021507)	Rwdd4a (MGP_PahariEiJ_G0021508)	Ing2 (MGP_PahariEiJ_G0021509)	Cdkn2aip (MGP_PahariEiJ_G0021510)	Cldn24 (MGP_PahariEiJ_G0021511)	MGP_PahariEiJ_G0021512	Wwc2 (MGP_PahariEiJ_G0021513)	Dctd (MGP_PahariEiJ_G0021514) ##22	Tenm3 (MGP_PahariEiJ_G0021515)	Aga (MGP_PahariEiJ_G0021517)	Neil3 (MGP_PahariEiJ_G0021518)	Vegfc (MGP_PahariEiJ_G0021519)	Spcs3 (MGP_PahariEiJ_G0021520)	Asb5 (MGP_PahariEiJ_G0021521)	Spata4 (MGP_PahariEiJ_G0021522)	Wdr17 (MGP_PahariEiJ_G0021523)	Gpm6a (MGP_PahariEiJ_G0021524)	Adam29 (MGP_PahariEiJ_G0021525)	Glra3 (MGP_PahariEiJ_G0021526)	Hpgd (MGP_PahariEiJ_G0021527)	MGP_PahariEiJ_G0021528	Fbxo8 (MGP_PahariEiJ_G0021529)	Hand2 (MGP_PahariEiJ_G0021530)
Rat	MODERN SPECIES	7	Irf2 (ENSRNOG00000009824)	Ndufa3-ps1 (ENSRNOG00000030778)	ENSRNOG00000067895	Enpp6 (ENSRNOG00000009660)	Stox2 (ENSRNOG00000009590)	Trappc11 (ENSRNOG00000022482)	Rwdd4 (ENSRNOG00000022500)	AABR07025743.1 (ENSRNOG00000033638)	ENSRNOG00000064469	Ing2 (ENSRNOG00000013480)	Cdkn2aip (ENSRNOG00000022736)	Cldn24 (ENSRNOG00000031521)	Cldn22 (ENSRNOG00000030889)	Wwc2 (ENSRNOG00000013248)	ENSRNOG00000065368	Dctd (ENSRNOG00000013215) ##22	ENSRNOG00000066202	ENSRNOG00000065184	Tenm3 (ENSRNOG00000012802)	ENSRNOG00000069013	Aga (ENSRNOG00000000108)	ENSRNOG00000064359	Neil3 (ENSRNOG00000011688)	Vegfc (ENSRNOG00000011416)	Spcs3 (ENSRNOG00000038933)	Asb5 (ENSRNOG00000042630)	Spata4 (ENSRNOG00000048035)	Wdr17 (ENSRNOG00000048847)	ENSRNOG00000070297	Gpm6a (ENSRNOG00000010731)	Adam21 (ENSRNOG00000059297)
Upper Galilee mountains blind mole rat	MODERN SPECIES	1663	Acsl1 (ENSNGAG00000016023)	Cenpu (ENSNGAG00000012618)	Primpol (ENSNGAG00000017754)	Casp3 (ENSNGAG00000016499)	Irf2 (ENSNGAG00000018557)	Enpp6 (ENSNGAG00000015809)	Stox2 (ENSNGAG00000003590)	Trappc11 (ENSNGAG00000013133)	Rwdd4a (ENSNGAG00000009985)	ENSNGAG00000000155	Ing2 (ENSNGAG00000018610)	Cdkn2aip (ENSNGAG00000000929)	ENSNGAG00000016002	ENSNGAG00000015447	ENSNGAG00000014995	Dctd (ENSNGAG00000012430) ##22
Lesser Egyptian jerboa	MODERN SPECIES	62	ENSJJAG00000024038	Slc25a31 (ENSJJAG00000024076)	ENSJJAG00000000989	ENSJJAG00000015563	Msr1 (ENSJJAG00000010232)	ENSJJAG00000020899	Tusc3 (ENSJJAG00000017924)	Sgcz (ENSJJAG00000017689)	Dlc1 (ENSJJAG00000015251)	Trappc11 (ENSJJAG00000021365)	ENSJJAG00000022133	Ing2 (ENSJJAG00000022521)	Cdkn2aip (ENSJJAG00000000248)	ENSJJAG00000005210	ENSJJAG00000012983	Dctd (ENSJJAG00000016617) ##22	Tenm3 (ENSJJAG00000009827)	ENSJJAG00000017527	ENSJJAG00000024327	ENSJJAG00000011547	ENSJJAG00000017324	Aga (ENSJJAG00000024205)	Neil3 (ENSJJAG00000021628)	ENSJJAG00000012501	ENSJJAG00000020696	ENSJJAG00000011565	Vegfc (ENSJJAG00000023820)	ENSJJAG00000005362	Asb5 (ENSJJAG00000009349)	Spata4 (ENSJJAG00000000204)	ENSJJAG00000018815
Kangaroo rat	DUPLICATION
Kangaroo rat	MODERN SPECIES	323	Cfap97 (ENSDORG00000015705)	Slc25a4 (ENSDORG00000013787)	Acsl1 (ENSDORG00000005463)	ENSDORG00000002563	Primpol (ENSDORG00000002558)	Casp3 (ENSDORG00000002554)	Irf2 (ENSDORG00000001398)	Enpp6 (ENSDORG00000004165)	Stox2 (ENSDORG00000014878)	Trappc11 (ENSDORG00000014289)	Rwdd4a (ENSDORG00000014285)	Ing2 (ENSDORG00000015275)	Cdkn2aip (ENSDORG00000015273)	ENSDORG00000027703	Wwc2 (ENSDORG00000015270)	ENSDORG00000010593 ##22	Tenm3 (ENSDORG00000007981)	Aga (ENSDORG00000014411)	ENSDORG00000002876	Vegfc (ENSDORG00000009540)	ENSDORG00000010006	Asb5 (ENSDORG00000009298)	Spata4 (ENSDORG00000002778)	ENSDORG00000026217	ENSDORG00000023707	Gpm6a (ENSDORG00000011732)	Glra3 (ENSDORG00000015747)	Hpgd (ENSDORG00000011326)	ENSDORG00000025276	Fbxo8 (ENSDORG00000010989)	Hand2 (ENSDORG00000007304)
Kangaroo rat	MODERN SPECIES	512															Lamb1 (ENSDORG00000001569)	ENSDORG00000027730 ##22	Dld (ENSDORG00000001568)	Slc26a3 (ENSDORG00000009535)	Cbll1 (ENSDORG00000028355)	Slc26a4 (ENSDORG00000006052)	Bcap29 (ENSDORG00000010589)	Dus4l (ENSDORG00000010587)	Cog5 (ENSDORG00000010580)	Gpr22 (ENSDORG00000010585)	Hbp1 (ENSDORG00000010576)	Prkar2b (ENSDORG00000025232)	ENSDORG00000010565	Nampt (ENSDORG00000008304)	Sypl (ENSDORG00000000228)	Cdhr3 (ENSDORG00000000224)	ENSDORG00000024300
Primates	ANCESTRAL SPECIES	10	ENSGT00940000154622.a.a	ENSGT00940000160388	ENSGT00940000154508.a.a	ENSGT00390000015511	ENSGT00390000003901	ENSGT00940000153232.a.b	ENSGT00940000159063	ENSGT00940000158457	ENSGT00520000055589.d	ENSGT00390000006550	ENSGT00390000015545	ENSGT00940000158194	ENSGT00940000158376	ENSGT00940000162234	ENSGT00410000025556.a.a.a.b	ENSGT00940000153676.a ##22	ENSGT00910000148572	ENSGT01030000234566.e.b.a.a	ENSGT00950000183045.C	ENSGT00940000153230.A	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000163394	ENSGT00940000158368	ENSGT00940000154593.a.b	ENSGT00390000009873	ENSGT00940000158356
Haplorrhini	ANCESTRAL SPECIES	20	ENSGT00940000154622.a.a	ENSGT00940000160388	ENSGT00940000154508.a.a	ENSGT00390000015511	ENSGT00390000003901	ENSGT00940000153232.a.b	ENSGT00940000159063	ENSGT00940000158457	ENSGT00520000055589.d	ENSGT00390000006550	ENSGT00390000015545	ENSGT00940000158194	ENSGT00940000158376	ENSGT00940000162234	ENSGT00410000025556.a.a.a.b	ENSGT00940000153676.a ##22	ENSGT00910000148572	ENSGT01030000234566.e.b.a.a	ENSGT00950000183045.C	ENSGT00940000153230.A	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000163394	ENSGT00940000158368	ENSGT00940000154593.a.b	ENSGT00390000009873	ENSGT00940000158356
Simiiformes	ANCESTRAL SPECIES	10	ENSGT00940000154508.a.a	ENSGT00910000147189	ENSGT00390000015511	ENSGT00390000003901	ENSGT00940000153232.a.b	ENSGT00940000159063	ENSGT00940000158457	ENSGT00520000055589.d	ENSGT00390000006550	ENSGT00390000015545	ENSGT00940000158194	ENSGT00940000158376	ENSGT00940000162234.y	ENSGT00940000162234.z	ENSGT00410000025556.a.a.a.b	ENSGT00940000153676.a ##22	ENSGT00910000148572	ENSGT01030000234566.e.b.a.a	ENSGT00950000183045.C	ENSGT00940000153230.A	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000163394	ENSGT00940000158368	ENSGT00940000154593.a.b	ENSGT00390000009873	ENSGT00940000158356
Catarrhini	ANCESTRAL SPECIES	14	ENSGT00940000160388	ENSGT00940000154508.a.a	ENSGT00910000147189	ENSGT00390000015511	ENSGT00390000003901	ENSGT00940000153232.a.b	ENSGT00730000111223.j	ENSGT00940000159063	ENSGT00940000158457	ENSGT00520000055589.d	ENSGT00390000006550	ENSGT00390000015545	ENSGT00940000158194	ENSGT00940000158376	ENSGT00410000025556.a.a.a.b	ENSGT00940000153676.a ##22	ENSGT00910000148572	ENSGT01030000234566.e.b.a.a	ENSGT00950000183045.C	ENSGT00940000153230.A	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000163394	ENSGT00940000158368	ENSGT00940000154593.a.b	ENSGT00390000009873	ENSGT00940000158356
Hominoidea	ANCESTRAL SPECIES	10	ENSGT00910000147189	ENSGT00390000015511	ENSGT00390000003901	ENSGT00940000153232.a.b	ENSGT00730000111223.j	ENSGT00940000159063	ENSGT00940000158457	ENSGT00520000055589.d	ENSGT00390000006550	ENSGT00390000015545	ENSGT00940000158194.c	ENSGT00940000158376	ENSGT00940000162234.y	ENSGT00940000162234.z	ENSGT00410000025556.a.a.a.b	ENSGT00940000153676.a ##22	ENSGT00910000148572	ENSGT01030000234566.e.b.a.a	ENSGT00950000183045.C	ENSGT00940000153230.A	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00390000013266.b	ENSGT00940000163394	ENSGT00940000158368	ENSGT00940000154593.a.b	ENSGT00390000009873
Hominidae	ANCESTRAL SPECIES	12	ENSGT00910000147189	ENSGT00390000015511	ENSGT00390000003901	ENSGT00940000153232.a.b	ENSGT00730000111223.j	ENSGT00940000159063	ENSGT00940000158457	ENSGT00520000055589.d	ENSGT00390000006550	ENSGT00390000015545	ENSGT00940000158194.c	ENSGT00940000158376	ENSGT00940000162234.y	ENSGT00940000162234.z	ENSGT00410000025556.a.a.a.b	ENSGT00940000153676.a ##22	ENSGT01030000234566.e.b.a.a	ENSGT00950000183045.C	ENSGT00940000153230.A	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000163394	ENSGT00940000158368	ENSGT00940000154593.a.b	ENSGT00390000009873	ENSGT00940000158356	ENSGT00940000153786.e.a.a
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	11	ENSGT00390000015511	ENSGT00390000003901	ENSGT00940000153232.a.b	ENSGT00730000111223.j	ENSGT00940000159063	ENSGT00940000158457	ENSGT00520000055589.d	ENSGT00390000006550	ENSGT00390000015545	ENSGT00940000158194.c	ENSGT00940000158376	ENSGT00940000162234.y	ENSGT00940000162234.z	ENSGT00410000025556.a.a.a.b	ENSGT00390000010285.c.ac	ENSGT00940000153676.a ##22	ENSGT01030000234566.e.b.a.a	ENSGT00950000183045.C	ENSGT00940000153230.A	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000163394	ENSGT00940000158368	ENSGT00940000154593.a.b	ENSGT00390000009873	ENSGT00940000158356	ENSGT00940000153786.e.a.a
Gorilla	MODERN SPECIES	17	ACSL1 (ENSGGOG00000009966)	CENPU (ENSGGOG00000011892)	ENSGGOG00000011879	CASP3 (ENSGGOG00000025155)	ENSGGOG00000036205	IRF2 (ENSGGOG00000016559)	STOX2 (ENSGGOG00000013917)	ENSGGOG00000036530	RWDD4 (ENSGGOG00000011982)	ING2 (ENSGGOG00000041782)	CDKN2AIP (ENSGGOG00000022072)	CLDN24 (ENSGGOG00000043794)	CLDN22 (ENSGGOG00000043233)	WWC2 (ENSGGOG00000009849)	ENSGGOG00000038808	DCTD (ENSGGOG00000016412) ##22	TENM3 (ENSGGOG00000011344)	AGA (ENSGGOG00000007600)	NEIL3 (ENSGGOG00000016799)	ENSGGOG00000040176	SPCS3 (ENSGGOG00000023323)	ASB5 (ENSGGOG00000009089)	SPATA4 (ENSGGOG00000001066)	WDR17 (ENSGGOG00000010477)	GPM6A (ENSGGOG00000002629)	ADAM29 (ENSGGOG00000011350)	GLRA3 (ENSGGOG00000006359)	HPGD (ENSGGOG00000009878)	CEP44 (ENSGGOG00000025044)	FBXO8 (ENSGGOG00000005344)	ENSGGOG00000024847
Homo/Pan group	ANCESTRAL SPECIES	10	ENSGT00390000015511	ENSGT00390000003901	ENSGT00940000153232.a.b	ENSGT00730000111223.j	ENSGT00940000159063	ENSGT00940000158457	ENSGT00520000055589.d	ENSGT00390000006550	ENSGT00390000015545	ENSGT00940000158194.c	ENSGT00940000158376	ENSGT00940000162234.y	ENSGT00940000162234.z	ENSGT00410000025556.a.a.a.b	ENSGT00390000010285.c.ac	ENSGT00940000153676.a ##22	ENSGT01030000234566.e.b.a.a	ENSGT00950000183045.C	ENSGT00940000153230.A	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000163394	ENSGT00940000158368	ENSGT00940000154593.a.b	ENSGT00390000009873	ENSGT00940000158356	ENSGT00940000160772
Pan	ANCESTRAL SPECIES	7	ENSGT00390000003901	ENSGT00940000153232.a.b	ENSGT00730000111223.j	ENSGT00940000159063	ENSGT00940000158457	ENSGT00520000055589.d	ENSGT00390000006550	ENSGT00390000015545	ENSGT00940000158194.c	ENSGT00940000158376	ENSGT00940000162234.y	ENSGT00940000162234.z	ENSGT00950000186328	ENSGT00410000025556.a.a.a.b	ENSGT00390000010285.c.ac	ENSGT00940000153676.a ##22	ENSGT01030000234566.e.b.a.a	ENSGT00950000183045.C	ENSGT00940000153230.A	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00390000013266.b	ENSGT00940000163394	ENSGT00940000158368	ENSGT00940000154593.a.b	ENSGT00390000009873	ENSGT00940000158356
Chimpanzee	MODERN SPECIES	17	PRIMPOL (ENSPTRG00000016642)	CASP3 (ENSPTRG00000016640)	ENSPTRG00000049340	IRF2 (ENSPTRG00000050798)	ENPP6 (ENSPTRG00000016636)	STOX2 (ENSPTRG00000016634)	TRAPPC11 (ENSPTRG00000016633)	RWDD4 (ENSPTRG00000016632)	ING2 (ENSPTRG00000016631)	CDKN2AIP (ENSPTRG00000016629)	CLDN24 (ENSPTRG00000016628)	CLDN22 (ENSPTRG00000016627)	ENSPTRG00000044853	WWC2 (ENSPTRG00000016626)	ENSPTRG00000050006	DCTD (ENSPTRG00000016624) ##22	TENM3 (ENSPTRG00000016622)	AGA (ENSPTRG00000016618)	NEIL3 (ENSPTRG00000016617)	VEGFC (ENSPTRG00000016616)	SPCS3 (ENSPTRG00000016615)	ASB5 (ENSPTRG00000016614)	SPATA4 (ENSPTRG00000016612)	WDR17 (ENSPTRG00000016611)	GPM6A (ENSPTRG00000016609)	ENSPTRG00000050820	ADAM29 (ENSPTRG00000016608)	GLRA3 (ENSPTRG00000016607)	HPGD (ENSPTRG00000016606)	CEP44 (ENSPTRG00000016605)	FBXO8 (ENSPTRG00000016604)
Bonobo	MODERN SPECIES	17	ACSL1 (ENSPPAG00000035756)	CENPU (ENSPPAG00000041105)	ENSPPAG00000038308	CASP3 (ENSPPAG00000029792)	IRF2 (ENSPPAG00000034580)	ENPP6 (ENSPPAG00000034444)	STOX2 (ENSPPAG00000019640)	TRAPPC11 (ENSPPAG00000028586)	RWDD4 (ENSPPAG00000041963)	ING2 (ENSPPAG00000042163)	CDKN2AIP (ENSPPAG00000040121)	CLDN24 (ENSPPAG00000034097)	ENSPPAG00000021015	WWC2 (ENSPPAG00000040062)	ENSPPAG00000037373	DCTD (ENSPPAG00000022425) ##22	TENM3 (ENSPPAG00000038117)	AGA (ENSPPAG00000036906)	NEIL3 (ENSPPAG00000035318)	VEGFC (ENSPPAG00000043349)	ENSPPAG00000035990	ASB5 (ENSPPAG00000034799)	SPATA4 (ENSPPAG00000034537)	WDR17 (ENSPPAG00000043468)	GPM6A (ENSPPAG00000042891)	ENSPPAG00000034639	ADAM29 (ENSPPAG00000014578)	GLRA3 (ENSPPAG00000036427)	HPGD (ENSPPAG00000040053)	CEP44 (ENSPPAG00000031462)	FBXO8 (ENSPPAG00000035822)
Human	MODERN SPECIES	16	HELT (ENSG00000187821)	ACSL1 (ENSG00000151726)	CENPU (ENSG00000151725)	PRIMPOL (ENSG00000164306)	CASP3 (ENSG00000164305)	IRF2 (ENSG00000168310)	ENPP6 (ENSG00000164303)	STOX2 (ENSG00000173320)	TRAPPC11 (ENSG00000168538)	RWDD4 (ENSG00000182552)	ING2 (ENSG00000168556)	CDKN2AIP (ENSG00000168564)	CLDN24 (ENSG00000185758)	CLDN22 (ENSG00000177300)	WWC2 (ENSG00000151718)	DCTD (ENSG00000129187) ##22	TENM3 (ENSG00000218336)	AGA (ENSG00000038002)	NEIL3 (ENSG00000109674)	VEGFC (ENSG00000150630)	SPCS3 (ENSG00000129128)	ASB5 (ENSG00000164122)	SPATA4 (ENSG00000150628)	WDR17 (ENSG00000150627)	GPM6A (ENSG00000150625)	ADAM29 (ENSG00000168594)	GLRA3 (ENSG00000145451)	HPGD (ENSG00000164120)	CEP44 (ENSG00000164118)	FBXO8 (ENSG00000164117)	HAND2 (ENSG00000164107)
Orangutan	MODERN SPECIES	17	ACSL1 (ENSPPYG00000015239)	CENPU (ENSPPYG00000015238)	PRIMPOL (ENSPPYG00000015237)	CASP3 (ENSPPYG00000037417)	IRF2 (ENSPPYG00000036054)	ENSPPYG00000033949	ENPP6 (ENSPPYG00000015233)	STOX2 (ENSPPYG00000015232)	TRAPPC11 (ENSPPYG00000015231)	RWDD4 (ENSPPYG00000015230)	ING2 (ENSPPYG00000015229)	CDKN2AIP (ENSPPYG00000015228)	CLDN24 (ENSPPYG00000015226)	CLDN22 (ENSPPYG00000015225)	WWC2 (ENSPPYG00000015224)	ENSPPYG00000015223 ##22	TENM3 (ENSPPYG00000029729)	AGA (ENSPPYG00000015220)	NEIL3 (ENSPPYG00000040336)	VEGFC (ENSPPYG00000015219)	SPCS3 (ENSPPYG00000038635)	ASB5 (ENSPPYG00000015217)	SPATA4 (ENSPPYG00000015216)	WDR17 (ENSPPYG00000015215)	GPM6A (ENSPPYG00000015214)	ADAM29 (ENSPPYG00000015277)	GLRA3 (ENSPPYG00000015213)	HPGD (ENSPPYG00000015212)	CEP44 (ENSPPYG00000015211)	FBXO8 (ENSPPYG00000015210)	ENSPPYG00000036877
Gibbon	MODERN SPECIES	22	CENPU (ENSNLEG00000010967)	ENSNLEG00000010919	CASP3 (ENSNLEG00000010895)	ENSNLEG00000034282	IRF2 (ENSNLEG00000010848)	ENPP6 (ENSNLEG00000029143)	STOX2 (ENSNLEG00000010803)	TRAPPC11 (ENSNLEG00000010773)	RWDD4 (ENSNLEG00000034868)	ING2 (ENSNLEG00000035063)	ENSNLEG00000033474	CDKN2AIP (ENSNLEG00000010720)	CLDN24 (ENSNLEG00000018868)	CLDN22 (ENSNLEG00000018867)	WWC2 (ENSNLEG00000010629)	DCTD (ENSNLEG00000032116) ##22	ENSNLEG00000033001	TENM3 (ENSNLEG00000010584)	AGA (ENSNLEG00000016825)	NEIL3 (ENSNLEG00000016818)	VEGFC (ENSNLEG00000016806)	ENSNLEG00000016805	ASB5 (ENSNLEG00000016797)	SPATA4 (ENSNLEG00000016788)	WDR17 (ENSNLEG00000016773)	GPM6A (ENSNLEG00000016762)	ENSNLEG00000033166	ENSNLEG00000016761	ADAM29 (ENSNLEG00000006715)	GLRA3 (ENSNLEG00000006711)	HPGD (ENSNLEG00000006696)
Cercopithecidae	ANCESTRAL SPECIES	10	ENSGT00940000154622.a.a	ENSGT00940000160388	ENSGT00940000154508.a.a	ENSGT00390000015511	ENSGT00390000003901	ENSGT00940000153232.a.b	ENSGT00730000111223.j	ENSGT00940000159063	ENSGT00940000158457	ENSGT00520000055589.d	ENSGT00390000006550	ENSGT00390000015545	ENSGT00940000158194	ENSGT00940000158376	ENSGT00410000025556.a.a.a.b	ENSGT00940000153676.a ##22	ENSGT00910000148572	ENSGT01030000234566.e.b.a.a	ENSGT00950000183045.C	ENSGT00940000153230.A	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000163394	ENSGT00940000158368	ENSGT00940000154593.a.b	ENSGT00390000008820.e.b.a.b.a	ENSGT00390000009873
Cercopithecinae	ANCESTRAL SPECIES	14	ENSGT00940000160388	ENSGT00940000154508.a.a	ENSGT00390000015511	ENSGT00390000003901	ENSGT00940000153232.a.b	ENSGT00940000159063	ENSGT00940000158457	ENSGT00520000055589.d	ENSGT00390000006550	ENSGT00390000015545	ENSGT00940000158194	ENSGT00940000158376	ENSGT00940000162234.y	ENSGT00940000162234.z	ENSGT00410000025556.a.a.a.b	ENSGT00940000153676.a ##22	ENSGT01030000234566.e.b.a.a	ENSGT00950000183045.C	ENSGT00940000153230.A	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000163394	ENSGT00940000158368	ENSGT00940000154593.a.b	ENSGT00390000008820.e.b.a.b.a	ENSGT00390000009873	ENSGT00940000158356
Cercopithecinae_a	ANCESTRAL SPECIES	13	ENSGT00390000015511	ENSGT00390000003901	ENSGT00940000153232.a.b.n	ENSGT00940000159063	ENSGT00940000158457	ENSGT00520000055589.d	ENSGT00390000006550	ENSGT00390000015545	ENSGT00940000158194	ENSGT00950000183192.a.a.y.b.b	ENSGT00910000147875	ENSGT00940000158376	ENSGT00940000162234.y	ENSGT00940000162234.z	ENSGT00410000025556.a.a.a.b	ENSGT00940000153676.a ##22	ENSGT01030000234566.e.b.a.a	ENSGT00950000183045.C	ENSGT00940000153230.A	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000163394	ENSGT00940000158368	ENSGT00940000154593.a.b	ENSGT00390000008820.e.b.a.b.a	ENSGT00390000009873	ENSGT00940000158356
Cercopithecinae_b	ANCESTRAL SPECIES	6	ENSGT00390000015511	ENSGT00390000003901	ENSGT00940000153232.a.b.n	ENSGT00940000159063	ENSGT00940000158457	ENSGT00520000055589.d	ENSGT00390000006550	ENSGT00390000015545	ENSGT00940000158194	ENSGT00950000183192.a.a.y.b.b	ENSGT00910000147875	ENSGT00940000158376	ENSGT00940000162234.y	ENSGT00940000162234.z	ENSGT00410000025556.a.a.a.b	ENSGT00940000153676.a ##22	ENSGT01030000234566.e.b.a.a	ENSGT00950000183045.C	ENSGT00940000153230.A	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000158368	ENSGT00940000154593.a.b	ENSGT00390000008820.e.b.a.b.a	ENSGT00390000009873	ENSGT00940000158356	ENSGT00940000160772
Olive baboon	MODERN SPECIES	13	IRF2 (ENSPANG00000013763)	ENPP6 (ENSPANG00000009066)	STOX2 (ENSPANG00000001074)	ENSPANG00000049838 ##30	TRAPPC11 (ENSPANG00000014290)	RWDD4 (ENSPANG00000015801)	ING2 (ENSPANG00000009492)	ENSPANG00000049160	CDKN2AIP (ENSPANG00000024476)	ENSPANG00000048078 ##30	ENSPANG00000040919	CLDN24 (ENSPANG00000004497)	CLDN22 (ENSPANG00000006467)	ENSPANG00000050861	ENSPANG00000040899	DCTD (ENSPANG00000018020) ##22	ENSPANG00000045902	TENM3 (ENSPANG00000000764)	ENSPANG00000038381 ##30	AGA (ENSPANG00000008027)	NEIL3 (ENSPANG00000014727)	ENSPANG00000045708	VEGFC (ENSPANG00000038064)	SPCS3 (ENSPANG00000005000)	ASB5 (ENSPANG00000019807)	SPATA4 (ENSPANG00000008029)	WDR17 (ENSPANG00000018056)	GPM6A (ENSPANG00000024619)	ENSPANG00000049567 ##31	ENSPANG00000038055	GLRA3 (ENSPANG00000019809)
Cercopithecinae_d	ANCESTRAL SPECIES	21	ENSGT00390000015511	ENSGT00390000003901	ENSGT00940000153232.a.b.n	ENSGT00940000159063	ENSGT00940000158457	ENSGT00520000055589.d	ENSGT00390000006550	ENSGT00390000015545	ENSGT00940000158194	ENSGT00950000183192.a.a.y.b.b	ENSGT00910000147875	ENSGT00940000158376	ENSGT00940000162234.y	ENSGT00940000162234.z	ENSGT00410000025556.a.a.a.b	ENSGT00940000153676.a ##22	ENSGT01030000234566.e.b.a.a	ENSGT00950000183045.C	ENSGT00940000153230.A	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000158368	ENSGT00940000154593.a.b	ENSGT00390000008820.e.b.a.b.a	ENSGT00390000009873	ENSGT00940000158356	ENSGT00940000160772
Sooty mangabey	MODERN SPECIES	272	CENPU (ENSCATG00000042276)	PRIMPOL (ENSCATG00000038976)	ENSCATG00000029430	ENSCATG00000037804	ENPP6 (ENSCATG00000037936)	STOX2 (ENSCATG00000014156)	TRAPPC11 (ENSCATG00000004022)	RWDD4 (ENSCATG00000034736)	ING2 (ENSCATG00000038558)	ENSCATG00000030466	ENSCATG00000039580	CDKN2AIP (ENSCATG00000018192)	CLDN24 (ENSCATG00000005875)	WWC2 (ENSCATG00000036789)	CLDN22 (ENSCATG00000020839)	DCTD (ENSCATG00000035278) ##22	TENM3 (ENSCATG00000040062)	ENSCATG00000024803	AGA (ENSCATG00000038636)	NEIL3 (ENSCATG00000033777)	VEGFC (ENSCATG00000040718)	SPCS3 (ENSCATG00000019740)	ASB5 (ENSCATG00000033982)	SPATA4 (ENSCATG00000012381)	WDR17 (ENSCATG00000019324)	GPM6A (ENSCATG00000039800)	GLRA3 (ENSCATG00000030144)	HPGD (ENSCATG00000000045)	ENSCATG00000038865	CEP44 (ENSCATG00000032368)	FBXO8 (ENSCATG00000042187)
Drill	MODERN SPECIES	1335	CENPU (ENSMLEG00000043104)	PRIMPOL (ENSMLEG00000044062)	CASP3 (ENSMLEG00000028788)	IRF2 (ENSMLEG00000033644)	ENPP6 (ENSMLEG00000028275)	STOX2 (ENSMLEG00000038095)	TRAPPC11 (ENSMLEG00000038322)	RWDD4 (ENSMLEG00000031916)	ING2 (ENSMLEG00000003125)	ENSMLEG00000028024	ENSMLEG00000031893	CDKN2AIP (ENSMLEG00000034996)	CLDN24 (ENSMLEG00000027914)	CLDN22 (ENSMLEG00000027406)	WWC2 (ENSMLEG00000038028)	DCTD (ENSMLEG00000037100) ##22	TENM3 (ENSMLEG00000033352)
Macaca	ANCESTRAL SPECIES	18	ENSGT00390000015511	ENSGT00390000003901	ENSGT00940000153232.a.b.m.a	ENSGT00940000159063	ENSGT00940000158457	ENSGT00520000055589.d	ENSGT00390000006550	ENSGT00390000015545	ENSGT00940000158194	ENSGT00950000183192.a.a.y.b.b	ENSGT00910000147875	ENSGT00940000158376	ENSGT00940000162234.y	ENSGT00940000162234.z	ENSGT00410000025556.a.a.a.b	ENSGT00940000153676.a ##22	ENSGT01030000234566.e.b.a.a	ENSGT00950000183045.C	ENSGT00940000153230.A	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000163394	ENSGT00940000158368	ENSGT00940000154593.a.b	ENSGT00390000008820.e.b.a.b.a	ENSGT00390000009873	ENSGT00940000158356
Macaca_a	ANCESTRAL SPECIES	12	ENSGT00940000154508.a.a	ENSGT00390000015511	ENSGT00390000003901	ENSGT00940000153232.a.b.n	ENSGT00940000159063	ENSGT00940000158457	ENSGT00520000055589.d	ENSGT00390000006550	ENSGT00390000015545	ENSGT00940000158194	ENSGT00940000158376	ENSGT01100000263493.a.b.a.a.a.a.a.a.a.b.b.b.a.a	ENSGT00940000162234.y	ENSGT00940000162234.z	ENSGT00410000025556.a.a.a.b	ENSGT00940000153676.a ##22	ENSGT01030000234566.e.b.a.a	ENSGT01100000263539.b.a.a.a.a.a.b.b.a.a.b.a.b.a.a.a.a ##30	ENSGT00950000183045.C	ENSGT00940000153230.A	ENSGT00940000156167.b	ENSGT00940000161627.a.a.a.a.b.a.a.b.a.a.a.a.a.a.a.b.b.b.d.a.a ##31	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000163394	ENSGT00940000158368	ENSGT00940000154593.a.b	ENSGT00390000009873
Rhesus	MODERN SPECIES	15	CASP3 (ENSMMUG00000012053)	IRF2 (ENSMMUG00000015087)	ENPP6 (ENSMMUG00000016747)	STOX2 (ENSMMUG00000004898)	ENSMMUG00000049655 ##37	ENSMMUG00000053358	TRAPPC11 (ENSMMUG00000023651)	RWDD4 (ENSMMUG00000023650)	ING2 (ENSMMUG00000008881)	CDKN2AIP (ENSMMUG00000002004)	ENSMMUG00000049670	ENSMMUG00000055157	CLDN24 (ENSMMUG00000030008)	CLDN22 (ENSMMUG00000015745)	WWC2 (ENSMMUG00000015748)	DCTD (ENSMMUG00000000284) ##22	TENM3 (ENSMMUG00000007240)	ENSMMUG00000058974 ##30	ENSMMUG00000059103	AGA (ENSMMUG00000007393)	NEIL3 (ENSMMUG00000007394)	VEGFC (ENSMMUG00000003748)	ENSMMUG00000056931 ##31	SPCS3 (ENSMMUG00000064613)	ASB5 (ENSMMUG00000013736)	SPATA4 (ENSMMUG00000013733)	WDR17 (ENSMMUG00000013730)	GPM6A (ENSMMUG00000007814)	ADAM29 (ENSMMUG00000061083)	GLRA3 (ENSMMUG00000008868)	HPGD (ENSMMUG00000020408)
Crab-eating macaque	MODERN SPECIES	15	IRF2 (ENSMFAG00000039751)	ENPP6 (ENSMFAG00000038701)	ENSMFAG00000058210	ENSMFAG00000049104	STOX2 (ENSMFAG00000044376)	ENSMFAG00000057408	TRAPPC11 (ENSMFAG00000039616)	ENSMFAG00000000543	ENSMFAG00000052775	ING2 (ENSMFAG00000032816)	CDKN2AIP (ENSMFAG00000046173)	ENSMFAG00000064058	CLDN24 (ENSMFAG00000008066)	CLDN22 (ENSMFAG00000012673)	WWC2 (ENSMFAG00000033741)	DCTD (ENSMFAG00000034653) ##22	ENSMFAG00000001427	ENSMFAG00000056147	ENSMFAG00000054145 ##30	AGA (ENSMFAG00000003729)	NEIL3 (ENSMFAG00000002547)	VEGFC (ENSMFAG00000003745)	ENSMFAG00000049264 ##31	SPCS3 (ENSMFAG00000001302)	ASB5 (ENSMFAG00000000562)	SPATA4 (ENSMFAG00000033699)	ENSMFAG00000062819	WDR17 (ENSMFAG00000043874)	GPM6A (ENSMFAG00000030986)	ADAM29 (ENSMFAG00000038871)	GLRA3 (ENSMFAG00000034554)
Pig-tailed macaque	MODERN SPECIES	375	ACSL1 (ENSMNEG00000023458)	CENPU (ENSMNEG00000034713)	PRIMPOL (ENSMNEG00000032646)	ENSMNEG00000018721	IRF2 (ENSMNEG00000034903)	ENPP6 (ENSMNEG00000035672)	STOX2 (ENSMNEG00000044751)	TRAPPC11 (ENSMNEG00000043814)	RWDD4 (ENSMNEG00000029331)	ING2 (ENSMNEG00000045559)	ENSMNEG00000036223	ENSMNEG00000023135	CDKN2AIP (ENSMNEG00000032207)	CLDN22 (ENSMNEG00000042661)	WWC2 (ENSMNEG00000034065)	DCTD (ENSMNEG00000033220) ##22	TENM3 (ENSMNEG00000030271)	AGA (ENSMNEG00000037318)	NEIL3 (ENSMNEG00000036177)	VEGFC (ENSMNEG00000045119)	SPCS3 (ENSMNEG00000036272)	ASB5 (ENSMNEG00000034889)	SPATA4 (ENSMNEG00000033332)	WDR17 (ENSMNEG00000033941)	GPM6A (ENSMNEG00000042014)	GLRA3 (ENSMNEG00000035116)	HPGD (ENSMNEG00000040489)	ENSMNEG00000043522	CEP44 (ENSMNEG00000012365)	FBXO8 (ENSMNEG00000043927)	ENSMNEG00000036274
Vervet Monkey	MODERN SPECIES	26	ENSCSAG00000002985	ACSL1 (ENSCSAG00000002990)	CENPU (ENSCSAG00000002994)	PRIMPOL (ENSCSAG00000002998)	CASP3 (ENSCSAG00000003002)	IRF2 (ENSCSAG00000003010)	ENPP6 (ENSCSAG00000003012)	STOX2 (ENSCSAG00000003014)	TRAPPC11 (ENSCSAG00000003019)	RWDD4 (ENSCSAG00000003024)	ING2 (ENSCSAG00000003025)	CDKN2AIP (ENSCSAG00000003030)	CLDN24 (ENSCSAG00000000094)	CLDN22 (ENSCSAG00000000096)	WWC2 (ENSCSAG00000003034)	DCTD (ENSCSAG00000003039) ##22	TENM3 (ENSCSAG00000003045)	ENSCSAG00000003051	AGA (ENSCSAG00000003060)	NEIL3 (ENSCSAG00000003064)	ENSCSAG00000003067	VEGFC (ENSCSAG00000003070)	SPCS3 (ENSCSAG00000003075)	ASB5 (ENSCSAG00000003079)	SPATA4 (ENSCSAG00000003081)	WDR17 (ENSCSAG00000003086)	GPM6A (ENSCSAG00000003087)	ADAM29 (ENSCSAG00000003088)	GLRA3 (ENSCSAG00000003089)	HPGD (ENSCSAG00000003090)	CEP44 (ENSCSAG00000003091)
Rhinopithecus	ANCESTRAL SPECIES	144	ENSGT00940000154508.a.a	ENSGT00390000015511	ENSGT00390000003901	ENSGT00940000153232.a.b.l	ENSGT00730000111223.j	ENSGT00940000159063	ENSGT00940000158457	ENSGT00520000055589.d	ENSGT00390000006550	ENSGT00390000015545	ENSGT00940000158194	ENSGT00940000167225	ENSGT00940000158376	ENSGT00940000162234.z	ENSGT00410000025556.a.a.a.b	ENSGT00940000153676.a ##22	ENSGT00910000148572	ENSGT01030000234566.e.b.a.a
Black snub-nosed monkey	MODERN SPECIES	1685						IRF2 (ENSRBIG00000039482)	ENPP6 (ENSRBIG00000025238)	STOX2 (ENSRBIG00000027490)	TRAPPC11 (ENSRBIG00000033668)	RWDD4 (ENSRBIG00000036803)	ENSRBIG00000005434	ING2 (ENSRBIG00000010666)	ENSRBIG00000042448	CDKN2AIP (ENSRBIG00000037956)	WWC2 (ENSRBIG00000040787)	DCTD (ENSRBIG00000044833) ##22	TENM3 (ENSRBIG00000037111)	ENSRBIG00000039333
Golden snub-nosed monkey	MODERN SPECIES	3069															ENSRROG00000029612	DCTD (ENSRROG00000026653) ##22	ENSRROG00000010539	TENM3 (ENSRROG00000029582)
Platyrrhini	ANCESTRAL SPECIES	5	ENSGT00940000154508.a.a	ENSGT00910000147189	ENSGT00390000015511	ENSGT00390000003901	ENSGT00940000153232.a.b.o.a	ENSGT00940000159063	ENSGT00940000158457	ENSGT00520000055589.d	ENSGT00390000006550	ENSGT00390000015545	ENSGT00940000158194	ENSGT00940000158376	ENSGT00940000162234.y	ENSGT00940000162234.z	ENSGT00410000025556.a.a.a.b	ENSGT00940000153676.a ##22	ENSGT01030000234566.e.b.a.a	ENSGT00950000183045.C	ENSGT00940000153230.A	ENSGT00940000156167.b	ENSGT00390000009223.hb	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000163394	ENSGT00940000158368	ENSGT00940000154593.a.b	ENSGT00390000009873	ENSGT00940000158356	ENSGT00940000160772
Cebidae	ANCESTRAL SPECIES	4	ENSGT00940000154508.a.a	ENSGT00910000147189	ENSGT00390000015511	ENSGT00390000003901	ENSGT00940000153232.a.b.o.a	ENSGT00940000159063	ENSGT00940000158457	ENSGT00520000055589.d	ENSGT00390000006550	ENSGT00390000015545	ENSGT00940000158194	ENSGT00940000158376	ENSGT00940000162234.y	ENSGT00940000162234.z	ENSGT00410000025556.a.a.a.b	ENSGT00940000153676.a ##22	ENSGT01030000234566.e.b.a.a	ENSGT00950000183045.C	ENSGT00940000153230.A	ENSGT00940000156167.b	ENSGT00390000009223.hb	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000163394	ENSGT00940000158368	ENSGT00940000154593.a.b	ENSGT00390000009873	ENSGT00940000158356	ENSGT00940000160772
Marmoset	MODERN SPECIES	15	CASP3 (ENSCJAG00000005740)	ENSCJAG00000082734	IRF2 (ENSCJAG00000042693)	ENPP6 (ENSCJAG00000005711)	ENSCJAG00000085011	STOX2 (ENSCJAG00000005690)	TRAPPC11 (ENSCJAG00000005616)	RWDD4 (ENSCJAG00000045540)	ENSCJAG00000063903	ING2 (ENSCJAG00000005602)	CDKN2AIP (ENSCJAG00000005591)	CLDN24 (ENSCJAG00000044314)	CLDN22 (ENSCJAG00000005586)	WWC2 (ENSCJAG00000005554)	ENSCJAG00000078649 ##31	DCTD (ENSCJAG00000005526) ##22	ENSCJAG00000070774	TENM3 (ENSCJAG00000005501)	ENSCJAG00000054220	ENSCJAG00000040263	ENSCJAG00000053898	AGA (ENSCJAG00000005476)	NEIL3 (ENSCJAG00000005464)	VEGFC (ENSCJAG00000039809)	SPCS3 (ENSCJAG00000073297)	ASB5 (ENSCJAG00000005400)	SPATA4 (ENSCJAG00000005386)	WDR17 (ENSCJAG00000005304)	GPM6A (ENSCJAG00000005275)	ADAM29 (ENSCJAG00000005263)	GLRA3 (ENSCJAG00000005246)
Cebidae_a	ANCESTRAL SPECIES	75	ENSGT00940000154622.a.a	ENSGT00940000160388	ENSGT00940000154508.a.a	ENSGT00910000147189	ENSGT00390000015511	ENSGT00390000003901	ENSGT00940000153232.a.b.o.a	ENSGT00940000159063	ENSGT00940000158457	ENSGT00520000055589.d	ENSGT00390000006550	ENSGT00390000015545	ENSGT00940000158194	ENSGT00940000158376	ENSGT00410000025556.a.a.a.b	ENSGT00940000153676.a ##22	ENSGT01030000234566.e.b.a.a	ENSGT00950000183045.C	ENSGT00940000153230.A	ENSGT00940000156167.b	ENSGT00390000009223.hb	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000158368	ENSGT00940000154593.a.b	ENSGT00390000009873	ENSGT00940000158356	ENSGT00940000160772	ENSGT00390000009191
Capuchin	MODERN SPECIES	11	SAMD8 (ENSCCAG00000021877)	DUSP13 (ENSCCAG00000022217)	DUSP29 (ENSCCAG00000030642)	KAT6B (ENSCCAG00000035139)	ADK (ENSCCAG00000023702)	AP3M1 (ENSCCAG00000028696)	VCL (ENSCCAG00000019256)	ENSCCAG00000025320	PLAU (ENSCCAG00000026433)	CAMK2G (ENSCCAG00000030173)	TRAPPC11 (ENSCCAG00000026597)	RWDD4 (ENSCCAG00000031031)	ING2 (ENSCCAG00000035793)	CDKN2AIP (ENSCCAG00000029374)	WWC2 (ENSCCAG00000025041)	DCTD (ENSCCAG00000030676) ##22	TENM3 (ENSCCAG00000028231)	ENSCCAG00000023127
Bolivian squirrel monkey	MODERN SPECIES	102	ENSSBOG00000022081	CENPU (ENSSBOG00000028087)	PRIMPOL (ENSSBOG00000020714)	CASP3 (ENSSBOG00000022394)	ENSSBOG00000020561	IRF2 (ENSSBOG00000023860)	ENPP6 (ENSSBOG00000025699)	STOX2 (ENSSBOG00000022049)	TRAPPC11 (ENSSBOG00000001467)	RWDD4 (ENSSBOG00000019970)	ING2 (ENSSBOG00000028567)	CDKN2AIP (ENSSBOG00000017285)	WWC2 (ENSSBOG00000016007)	ENSSBOG00000024426	ENSSBOG00000026812	DCTD (ENSSBOG00000015125) ##22	TENM3 (ENSSBOG00000033110)	AGA (ENSSBOG00000023573)	NEIL3 (ENSSBOG00000032601)	VEGFC (ENSSBOG00000033122)	SPCS3 (ENSSBOG00000019414)	ASB5 (ENSSBOG00000033408)	SPATA4 (ENSSBOG00000028949)	WDR17 (ENSSBOG00000014364)	GPM6A (ENSSBOG00000035003)	ENSSBOG00000013542	ADAM29 (ENSSBOG00000031942)	GLRA3 (ENSSBOG00000024266)	HPGD (ENSSBOG00000018359)
Mas night monkey	MODERN SPECIES	1220					ENSANAG00000028520	CASP3 (ENSANAG00000025074)	IRF2 (ENSANAG00000029650)	ENPP6 (ENSANAG00000032373)	STOX2 (ENSANAG00000028743)	TRAPPC11 (ENSANAG00000023094)	RWDD4 (ENSANAG00000028135)	ING2 (ENSANAG00000035100)	CDKN2AIP (ENSANAG00000024642)	ENSANAG00000031052	WWC2 (ENSANAG00000029107)	DCTD (ENSANAG00000026089) ##22	TENM3 (ENSANAG00000029299)
Tarsier	DUPLICATION
Tarsier	MODERN SPECIES	6728																ENSTSYG00000002583 ##22
Tarsier	MODERN SPECIES	4237																ENSTSYG00000032356 ##22	TENM3 (ENSTSYG00000006276)	FDPS (ENSTSYG00000013582)
Strepsirrhini	ANCESTRAL SPECIES	43	ENSGT00940000154622.a.a	ENSGT00940000160388	ENSGT00940000154508.a.a	ENSGT00390000015511	ENSGT00390000003901	ENSGT00940000153232.a.b	ENSGT00940000159063	ENSGT00940000158457	ENSGT00520000055589.d	ENSGT00390000006550	ENSGT00390000015545	ENSGT00940000158194	ENSGT00940000158376	ENSGT00940000162234	ENSGT00410000025556.a.a.a.b	ENSGT00940000153676.a ##22	ENSGT00910000148572	ENSGT01030000234566.e.b.a.a	ENSGT00950000183045.C	ENSGT00940000153230.A	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000163394	ENSGT00940000158368	ENSGT00940000154593.a.b	ENSGT00390000009873	ENSGT00940000158356
Bushbaby	MODERN SPECIES	176	SLC25A4 (ENSOGAG00000012904)	ENSOGAG00000028514	HELT (ENSOGAG00000015934)	ACSL1 (ENSOGAG00000001689)	PRIMPOL (ENSOGAG00000001687)	ENSOGAG00000031064	CASP3 (ENSOGAG00000005985)	IRF2 (ENSOGAG00000010966)	ENPP6 (ENSOGAG00000004801)	STOX2 (ENSOGAG00000004800)	TRAPPC11 (ENSOGAG00000027550)	RWDD4 (ENSOGAG00000016709)	ING2 (ENSOGAG00000016707)	CDKN2AIP (ENSOGAG00000026622)	WWC2 (ENSOGAG00000011913)	DCTD (ENSOGAG00000000583) ##22	ENSOGAG00000005872	ENSOGAG00000024359	ENSOGAG00000032766	AGA (ENSOGAG00000015190)	NEIL3 (ENSOGAG00000012624)	VEGFC (ENSOGAG00000003828)	SPCS3 (ENSOGAG00000003825)	ASB5 (ENSOGAG00000012227)	SPATA4 (ENSOGAG00000012224)	WDR17 (ENSOGAG00000012212)	GPM6A (ENSOGAG00000001624)	ENSOGAG00000025364	ADAM29 (ENSOGAG00000015487)	GLRA3 (ENSOGAG00000015483)	HPGD (ENSOGAG00000004664)
Lemuriformes	ANCESTRAL SPECIES	38	ENSGT00940000154622.a.a	ENSGT00940000160388	ENSGT00940000154508.a.a	ENSGT00390000015511	ENSGT00390000003901	ENSGT00940000153232.a.b	ENSGT00940000159063	ENSGT00940000158457	ENSGT00520000055589.d	ENSGT00390000006550	ENSGT00390000015545	ENSGT00940000158194	ENSGT00940000158376	ENSGT00940000162234	ENSGT00410000025556.a.a.a.b	ENSGT00940000153676.a ##22	ENSGT00910000148572	ENSGT01030000234566.e.b.a.a
Mouse lemur	MODERN SPECIES	5	NEK1 (ENSMICG00000017300)	ENSMICG00000033035	SH3RF1 (ENSMICG00000017298)	CBR4 (ENSMICG00000034212)	ENSMICG00000036078	ENSMICG00000028842	DDX60 (ENSMICG00000013542)	ANXA10 (ENSMICG00000013528)	SPOCK3 (ENSMICG00000009138)	TLL1 (ENSMICG00000007263)	CPE (ENSMICG00000046699)	MSMO1 (ENSMICG00000033307)	KLHL2 (ENSMICG00000000794)	TMEM192 (ENSMICG00000001365)	TRIM60 (ENSMICG00000033211)	DCTD (ENSMICG00000006929) ##22	ENSMICG00000042810
Lemuriformes_a	ANCESTRAL SPECIES	96	ENSGT00940000154622.a.a	ENSGT00940000160388	ENSGT00940000154508.a.a	ENSGT00390000015511	ENSGT00390000003901	ENSGT00940000153232.a.b	ENSGT00940000159063	ENSGT00940000158457	ENSGT00520000055589.d	ENSGT00390000006550	ENSGT00390000015545	ENSGT00940000158194	ENSGT00940000158376	ENSGT00940000162234	ENSGT00410000025556.a.a.a.b	ENSGT00940000153676.a ##22	ENSGT00910000148572	ENSGT01030000234566.e.b.a.a
Coquerels sifaka	MODERN SPECIES	701											TRAPPC11 (ENSPCOG00000025081)	ENSPCOG00000023814	ING2 (ENSPCOG00000020453)	CDKN2AIP (ENSPCOG00000016379)	WWC2 (ENSPCOG00000013314)	DCTD (ENSPCOG00000018551) ##22	TENM3 (ENSPCOG00000016603)
Greater bamboo lemur	MODERN SPECIES	934	HELT (ENSPSMG00000024925)	ACSL1 (ENSPSMG00000024862)	CENPU (ENSPSMG00000024713)	PRIMPOL (ENSPSMG00000024702)	CASP3 (ENSPSMG00000024671)	IRF2 (ENSPSMG00000024663)	ENPP6 (ENSPSMG00000024655)	STOX2 (ENSPSMG00000024652)	TRAPPC11 (ENSPSMG00000024637)	RWDD4 (ENSPSMG00000024594)	ING2 (ENSPSMG00000024574)	ENSPSMG00000024569	CDKN2AIP (ENSPSMG00000024567)	ENSPSMG00000024565	WWC2 (ENSPSMG00000024556)	DCTD (ENSPSMG00000024537) ##22	ENSPSMG00000024534	TENM3 (ENSPSMG00000024532)
Laurasiatheria	ANCESTRAL SPECIES	24	ENSGT00940000160388	ENSGT00940000154508.a.a	ENSGT00390000015511	ENSGT00390000003901	ENSGT00940000153232.a.b	ENSGT00940000159063	ENSGT00940000158457	ENSGT00520000055589.d	ENSGT00390000006550	ENSGT00390000015545	ENSGT00940000158194	ENSGT00940000158376	ENSGT00940000162234	ENSGT00940000161922.i.b	ENSGT00410000025556.a.a.a.b	ENSGT00940000153676.a ##22	ENSGT00910000148572	ENSGT01030000234566.e.b.a.a	ENSGT00950000183045.C	ENSGT00940000153230.A	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d
Laurasiatheria_a	ANCESTRAL SPECIES	8	ENSGT00940000160388	ENSGT00940000154508.a.a	ENSGT00390000015511	ENSGT00390000003901	ENSGT00940000153232.a.b	ENSGT00940000159063	ENSGT00940000158457	ENSGT00520000055589.d	ENSGT00390000006550	ENSGT00390000015545	ENSGT00940000158194	ENSGT00940000158376	ENSGT00940000162234	ENSGT00940000161922.i.b	ENSGT00410000025556.a.a.a.b	ENSGT00940000153676.a ##22	ENSGT00910000148572	ENSGT01030000234566.e.b.a.a	ENSGT00950000183045.C	ENSGT00940000153230.A	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000160995.b	ENSGT00990000204018	ENSGT00390000009472	ENSGT00940000163552.a	ENSGT00940000163552.b
Artiodactyla	ANCESTRAL SPECIES	24	ENSGT00940000160388	ENSGT00940000154508.a.a.g	ENSGT00390000015511	ENSGT00390000003901	ENSGT00940000153232.a.b	ENSGT00940000159063	ENSGT00940000158457	ENSGT00520000055589.d	ENSGT00390000006550	ENSGT00390000015545	ENSGT00940000158194	ENSGT00940000158376	ENSGT00940000162234	ENSGT00940000161922.i.b	ENSGT00410000025556.a.a.a.b	ENSGT00940000153676.a ##22	ENSGT00910000148572	ENSGT01030000234566.e.b.a.a	ENSGT00950000183045.C	ENSGT00940000153230.A	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000160995.b	ENSGT00990000204018	ENSGT00390000009472	ENSGT00940000163552.a	ENSGT01070000253766.A.a.a.b
Suina	ANCESTRAL SPECIES	3	ENSGT00940000160388	ENSGT00940000154508.a.a.g	ENSGT00390000015511	ENSGT00390000003901	ENSGT00940000153232.a.b	ENSGT00940000159063	ENSGT00940000158457	ENSGT00520000055589.d	ENSGT00390000006550	ENSGT00390000015545	ENSGT00940000158194	ENSGT00940000158376	ENSGT00940000162234	ENSGT00940000161922.i.b	ENSGT00410000025556.a.a.a.b	ENSGT00940000153676.a ##22	ENSGT01030000234566.e.b.a.a	ENSGT00950000183045.C	ENSGT00940000153230.A	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00990000204018.c	ENSGT00940000160995.b	ENSGT00990000204018.d	ENSGT00390000009472	ENSGT01090000260492	ENSGT00530000064280
Chacoan peccary	MODERN SPECIES	87	CENPU (ENSCWAG00000002898)	PRIMPOL (ENSCWAG00000002854)	CASP3 (ENSCWAG00000002835)	ENSCWAG00000002822	IRF2 (ENSCWAG00000002803)	ENPP6 (ENSCWAG00000002789)	ENSCWAG00000002776	TRAPPC11 (ENSCWAG00000002715)	RWDD4 (ENSCWAG00000002685)	ING2 (ENSCWAG00000002669)	CDKN2AIP (ENSCWAG00000002663)	ENSCWAG00000002647	ENSCWAG00000002644	ENSCWAG00000002638	WWC2 (ENSCWAG00000002574)	DCTD (ENSCWAG00000002557) ##22	TENM3 (ENSCWAG00000002535)	AGA (ENSCWAG00000002514)	NEIL3 (ENSCWAG00000002489)	VEGFC (ENSCWAG00000002469)	SPCS3 (ENSCWAG00000002459)	ASB5 (ENSCWAG00000002433)	SPATA4 (ENSCWAG00000002376)	WDR17 (ENSCWAG00000002151)	GPM6A (ENSCWAG00000002062)	ENSCWAG00000002049	ENSCWAG00000002034	ENSCWAG00000002024	ENSCWAG00000002011
Pig	MODERN SPECIES	6	ACSL1 (ENSSSCG00000015784)	CENPU (ENSSSCG00000015785)	CASP3 (ENSSSCG00000034012)	PRIMPOL (ENSSSCG00000015786)	IRF2 (ENSSSCG00000015782)	ENPP6 (ENSSSCG00000015781)	STOX2 (ENSSSCG00000015780)	TRAPPC11 (ENSSSCG00000015777)	RWDD4 (ENSSSCG00000015776)	ING2 (ENSSSCG00000024555)	CDKN2AIP (ENSSSCG00000015779)	ENSSSCG00000022456	CLDN22 (ENSSSCG00000027901)	ENSSSCG00000033315	WWC2 (ENSSSCG00000021731)	DCTD (ENSSSCG00000015775) ##22	TENM3 (ENSSSCG00000015774)	ENSSSCG00000048815	ENSSSCG00000050308	ENSSSCG00000055184	ENSSSCG00000063491	AGA (ENSSSCG00000015772)	ENSSSCG00000057042	NEIL3 (ENSSSCG00000015771)	VEGFC (ENSSSCG00000015770)	SPCS3 (ENSSSCG00000015769)	ASB5 (ENSSSCG00000030395)	SPATA4 (ENSSSCG00000015767)	WDR17 (ENSSSCG00000015766)	ENSSSCG00000049422	GPM6A (ENSSSCG00000023328)
Artiodactyla_a	ANCESTRAL SPECIES	25	ENSGT00940000160388	ENSGT00940000154508.a.a.g	ENSGT00390000015511	ENSGT00390000003901	ENSGT00940000153232.a.b	ENSGT00940000159063	ENSGT00940000158457	ENSGT00520000055589.d	ENSGT00390000006550	ENSGT00390000015545	ENSGT00940000158194	ENSGT00940000158376	ENSGT00940000162234	ENSGT00940000161922.i.b	ENSGT00410000025556.a.a.a.b	ENSGT00940000153676.a ##22	ENSGT00910000148572	ENSGT01030000234566.e.b.a.a	ENSGT00950000183045.C	ENSGT00940000153230.A	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00990000204018	ENSGT00940000167948	ENSGT00940000160995.b	ENSGT00390000009472	ENSGT00940000163552.a
Artiodactyla_b	ANCESTRAL SPECIES	6	ENSGT00940000160388	ENSGT00940000154508.a.a.g	ENSGT00390000015511	ENSGT00390000003901	ENSGT00940000153232.a.b	ENSGT00940000159063	ENSGT00940000158457	ENSGT00520000055589.d	ENSGT00390000006550	ENSGT00390000015545	ENSGT00940000158194	ENSGT00940000158376	ENSGT00940000162234	ENSGT00940000161922.i.b	ENSGT00410000025556.a.a.a.b	ENSGT00940000153676.a ##22	ENSGT00910000148572	ENSGT01030000234566.e.b.a.a	ENSGT00950000183045.C	ENSGT00940000153230.A	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000160995.b	ENSGT00990000204018	ENSGT00390000009472	ENSGT00940000163552.a.b	ENSGT00910000144208
Cetacea	ANCESTRAL SPECIES	22																ENSGT00940000153676.a ##22	ENSGT00910000148572	ENSGT01030000234566.e.b.a.a	ENSGT00950000183045.C	ENSGT00940000153230.A	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000160995.b	ENSGT00990000204018	ENSGT00390000009472	ENSGT00940000163552.a.a.b	ENSGT00390000017014
Odontoceti	ANCESTRAL SPECIES	23																ENSGT00940000153676.a ##22	ENSGT00910000148572	ENSGT01030000234566.e.b.a.a	ENSGT00950000183045.C	ENSGT00940000153230.A	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000160995.b	ENSGT00990000204018	ENSGT00390000009472	ENSGT00940000163552.a.a.b	ENSGT00390000017014
Sperm whale	MODERN SPECIES	12																DCTD (ENSPCTG00005004729) ##22	TENM3 (ENSPCTG00005004648)	ENSPCTG00005004613	AGA (ENSPCTG00005004580)	NEIL3 (ENSPCTG00005004557)	VEGFC (ENSPCTG00005004531)	SPCS3 (ENSPCTG00005004511)	ASB5 (ENSPCTG00005014421)	SPATA4 (ENSPCTG00005014252)	WDR17 (ENSPCTG00005014163)	GPM6A (ENSPCTG00005013933)	ENSPCTG00005013877	ENSPCTG00005013825	ENSPCTG00005013766	ENSPCTG00005013670	DEFB1 (ENSPCTG00005013626)
Odontoceti_a	ANCESTRAL SPECIES	25																ENSGT00940000153676.a ##22	ENSGT00910000148572	ENSGT01030000234566.e.b.a.a	ENSGT00950000183045.C	ENSGT00940000153230.A	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000160995.b	ENSGT00390000009472	ENSGT00940000163626	ENSGT00390000017014	ENSGT00400000023630
Odontoceti_b	DUPLICATION
Odontoceti_b	ANCESTRAL SPECIES	16	ENSGT01070000255137	ENSGT00390000000204	ENSGT00940000157333	ENSGT00390000014620.k	ENSGT00940000153432.A.a	ENSGT00550000074902	ENSGT00940000155738	ENSGT00390000016550	ENSGT00940000158256	ENSGT00390000004214	ENSGT00950000182906.a.a.b	ENSGT00940000155335	ENSGT00930000151032.B	ENSGT00520000062027	ENSGT00940000157800	ENSGT00940000153676.a.i ##22	ENSGT00390000007870	ENSGT01100000263555.b	ENSGT00950000183187.B	ENSGT01100000263514.A.f	ENSGT00940000159360	ENSGT00730000110939.b	ENSGT00530000063718.a.a	ENSGT00940000154334.l	ENSGT00940000161851	ENSGT00900000141125	ENSGT00720000108861	ENSGT00940000157287	ENSGT00390000017589.c	ENSGT00940000153335.a.a	ENSGT00940000153578.A
Monodontidae	ANCESTRAL SPECIES	16	ENSGT00950000182895.a.a.a.a.a.a.a	ENSGT00390000000204	ENSGT00940000157333	ENSGT00390000014620.k	ENSGT00940000153432.A.a	ENSGT00550000074902	ENSGT00940000155738	ENSGT00390000016550	ENSGT00940000158256	ENSGT00390000004214	ENSGT00950000182906.a.a.b	ENSGT00940000155335	ENSGT00930000151032.B	ENSGT00520000062027	ENSGT00940000157800	ENSGT00940000153676.a.i ##22	ENSGT00390000007870	ENSGT01100000263555.b	ENSGT00950000183187.B	ENSGT01100000263514.A.f	ENSGT00940000159360	ENSGT00730000110939.b	ENSGT00530000063718.a.a	ENSGT00940000154334.l	ENSGT00940000161851	ENSGT00900000141125	ENSGT00720000108861	ENSGT00940000157287	ENSGT00390000017589.c	ENSGT00940000153335.a.a	ENSGT00940000153578.A
Narwhal	MODERN SPECIES	316	ARMC7 (ENSMMNG00015021483)	NT5C (ENSMMNG00015021462)	JPT1 (ENSMMNG00015021453)	ENSMMNG00015021438	NUP85 (ENSMMNG00015021391)	GGA3 (ENSMMNG00015021349)	ENSMMNG00015021329	SLC25A19 (ENSMMNG00015021299)	GRB2 (ENSMMNG00015021220)	TMEM94 (ENSMMNG00015021085)	CASKIN2 (ENSMMNG00015020986)	TSEN54 (ENSMMNG00015020938)	LLGL2 (ENSMMNG00015020903)	SMIM5 (ENSMMNG00015020801)	RECQL5 (ENSMMNG00015020738)	ENSMMNG00015020714 ##22	SAP30BP (ENSMMNG00015020693)	ITGB4 (ENSMMNG00015020539)	GALK1 (ENSMMNG00015020470)	ENSMMNG00015020450	UNK (ENSMMNG00015020412)	UNC13D (ENSMMNG00015020347)	WBP2 (ENSMMNG00015020308)	TRIM47 (ENSMMNG00015020279)	TRIM65 (ENSMMNG00015020262)	MRPL38 (ENSMMNG00015020240)	FBF1 (ENSMMNG00015020178)	ACOX1 (ENSMMNG00015020076)	TEN1 (ENSMMNG00015020028)	CDK3 (ENSMMNG00015020007)	ENSMMNG00015019917
Vaquita	MODERN SPECIES	12	JPT1 (ENSPSNG00000020201)	ENSPSNG00000020161	ENSPSNG00000020122	NUP85 (ENSPSNG00000020041)	GGA3 (ENSPSNG00000019955)	ENSPSNG00000019911	ENSPSNG00000019796	GRB2 (ENSPSNG00000019721)	TMEM94 (ENSPSNG00000019220)	CASKIN2 (ENSPSNG00000019079)	TSEN54 (ENSPSNG00000019026)	LLGL2 (ENSPSNG00000018735)	ENSPSNG00000017920	SMIM5 (ENSPSNG00000017821)	RECQL5 (ENSPSNG00000017584)	ENSPSNG00000017480 ##22	SAP30BP (ENSPSNG00000017385)	ITGB4 (ENSPSNG00000016316)	GALK1 (ENSPSNG00000016224)	ENSPSNG00000016178	UNK (ENSPSNG00000016123)	UNC13D (ENSPSNG00000015977)	WBP2 (ENSPSNG00000015790)	TRIM47 (ENSPSNG00000015694)	TRIM65 (ENSPSNG00000015646)	MRPL38 (ENSPSNG00000015594)	FBF1 (ENSPSNG00000015481)	ACOX1 (ENSPSNG00000015365)	TEN1 (ENSPSNG00000015294)	CDK3 (ENSPSNG00000015253)	ENSPSNG00000014979
Odontoceti_b	ANCESTRAL SPECIES	23																ENSGT00940000153676.a.j ##22	ENSGT00910000148572	ENSGT01030000234566.e.b.a.a	ENSGT00950000183045.C	ENSGT00940000153230.A	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000160995.b	ENSGT00390000009472	ENSGT00940000163626	ENSGT00390000017014	ENSGT00400000023630
Monodontidae	ANCESTRAL SPECIES	24																ENSGT00940000153676.a.j ##22	ENSGT00910000148572	ENSGT01030000234566.e.b.a.a	ENSGT00950000183045.C	ENSGT00940000153230.A	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000160995.b	ENSGT00390000009472	ENSGT00940000163626	ENSGT00390000017014	ENSGT00400000023630
Beluga whale	MODERN SPECIES	30																DCTD (ENSDLEG00000007562) ##22	TENM3 (ENSDLEG00000007724)	ENSDLEG00000011880	ENSDLEG00000011888	AGA (ENSDLEG00000011914)	NEIL3 (ENSDLEG00000011934)	VEGFC (ENSDLEG00000011972)	SPCS3 (ENSDLEG00000011990)	ASB5 (ENSDLEG00000012000)	SPATA4 (ENSDLEG00000012022)	WDR17 (ENSDLEG00000012102)	GPM6A (ENSDLEG00000012490)	ENSDLEG00000012505	DEFB1 (ENSDLEG00000012527)	ENSDLEG00000012534	ENSDLEG00000012537
Narwhal	MODERN SPECIES	303																ENSMMNG00015006264 ##22	ENSMMNG00015006238	TENM3 (ENSMMNG00015006198)	AGA (ENSMMNG00015006156)	NEIL3 (ENSMMNG00015006138)	VEGFC (ENSMMNG00015006117)	SPCS3 (ENSMMNG00015006095)	ASB5 (ENSMMNG00015006061)	SPATA4 (ENSMMNG00015005959)	WDR17 (ENSMMNG00015005853)	GPM6A (ENSMMNG00015005770)	ENSMMNG00015005732	ENSMMNG00015005710	ENSMMNG00015005689	DEFB1 (ENSMMNG00015005667)	ENSMMNG00015005654
Vaquita	MODERN SPECIES	13																ENSPSNG00000011977 ##22	TENM3 (ENSPSNG00000012019)	AGA (ENSPSNG00000012318)	NEIL3 (ENSPSNG00000012369)	VEGFC (ENSPSNG00000012411)	SPCS3 (ENSPSNG00000012470)	ASB5 (ENSPSNG00000012545)	SPATA4 (ENSPSNG00000012798)	WDR17 (ENSPSNG00000012956)	GPM6A (ENSPSNG00000013103)	ENSPSNG00000013292	ENSPSNG00000013332	DEFB1 (ENSPSNG00000013427)	ENSPSNG00000013468	ENSPSNG00000013511	ENSPSNG00000013568
Dolphin	MODERN SPECIES	2883																DCTD (ENSTTRG00000001460) ##22	TENM3 (ENSTTRG00000001453)
Blue whale	DUPLICATION
Blue whale	MODERN SPECIES	13																ENSBMSG00010020142 ##22	TENM3 (ENSBMSG00010020172)	AGA (ENSBMSG00010020237)	NEIL3 (ENSBMSG00010020256)	VEGFC (ENSBMSG00010020287)	SPCS3 (ENSBMSG00010020305)	ASB5 (ENSBMSG00010020420)	SPATA4 (ENSBMSG00010020504)	WDR17 (ENSBMSG00010020568)	GPM6A (ENSBMSG00010020866)	ENSBMSG00010020916	ENSBMSG00010020924	ENSBMSG00010020932	ENSBMSG00010020939	DEFB1 (ENSBMSG00010020953)	ENSBMSG00010020960
Blue whale	MODERN SPECIES	11	JCAD (ENSBMSG00010005345)	SVIL (ENSBMSG00010005405)	ZNF438 (ENSBMSG00010005812)	ZEB1 (ENSBMSG00010005862)	ENSBMSG00010005938	KIF5B (ENSBMSG00010006140)	EPC1 (ENSBMSG00010006327)	NSUN6 (ENSBMSG00010000003)	CACNB2 (ENSBMSG00010000242)	SLC39A12 (ENSBMSG00010002610)	MRC1 (ENSBMSG00010002635)	TMEM236 (ENSBMSG00010002660)	ENSBMSG00010002668	HACD1 (ENSBMSG00010002679)	ST8SIA6 (ENSBMSG00010002690)	ENSBMSG00010002705 ##22	VIM (ENSBMSG00010002717)	TRDMT1 (ENSBMSG00010002733)	ENSBMSG00010002741	CUBN (ENSBMSG00010002764)	RSU1 (ENSBMSG00010002802)	C1QL3 (ENSBMSG00010002809)	PTER (ENSBMSG00010002813)	ENSBMSG00010002821	MINDY3 (ENSBMSG00010002834)	ENSBMSG00010002872	ITGA8 (ENSBMSG00010002882)	FAM171A1 (ENSBMSG00010002911)	NMT2 (ENSBMSG00010002922)	RPP38 (ENSBMSG00010002938)	MEIG1 (ENSBMSG00010002945)
Pecora	ANCESTRAL SPECIES	31	ENSGT00940000160388	ENSGT00940000154508.a.a.g	ENSGT00390000015511	ENSGT00390000003901	ENSGT00940000153232.a.b	ENSGT00940000159063	ENSGT00940000158457	ENSGT00520000055589.d	ENSGT00390000006550	ENSGT00390000015545	ENSGT00940000158194	ENSGT00940000158376	ENSGT00940000162234	ENSGT00940000161922.i.b	ENSGT00410000025556.a.a.a.b	ENSGT00940000153676.a ##22	ENSGT01030000234566.e.b.a.a	ENSGT00950000183045.C	ENSGT00940000153230.A	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT01020000230640.a	ENSGT00390000009472.e	ENSGT00940000163552.a.a.b	ENSGT00390000017014	ENSGT00400000023423.b.a	ENSGT00400000023423.b.b
Percora_a	ANCESTRAL SPECIES	31	ENSGT00940000160388	ENSGT00940000154508.a.a.g	ENSGT00390000015511	ENSGT00390000003901	ENSGT00940000153232.a.b	ENSGT00940000159063	ENSGT00940000158457	ENSGT00520000055589.d	ENSGT00390000006550	ENSGT00390000015545	ENSGT00940000158194	ENSGT00940000158376	ENSGT00940000162234	ENSGT00940000161922.i.b	ENSGT00410000025556.a.a.a.b	ENSGT00940000153676.a ##22	ENSGT01030000234566.e.b.a.a	ENSGT00950000183045.C	ENSGT00940000153230.A	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT01020000230640.a	ENSGT00390000009472.e	ENSGT00940000163552.a.a.b	ENSGT00390000017014	ENSGT00400000023423.b.a.a	ENSGT00400000023423.b.b
Bovidae	ANCESTRAL SPECIES	30	ENSGT00940000160388	ENSGT00940000154508.a.a.g	ENSGT00390000015511	ENSGT00390000003901	ENSGT00940000153232.a.b	ENSGT00940000159063	ENSGT00940000158457	ENSGT00520000055589.d	ENSGT00390000006550	ENSGT00390000015545	ENSGT00940000158194	ENSGT00940000158376	ENSGT00940000162234	ENSGT00940000161922.i.b	ENSGT00410000025556.a.a.a.b	ENSGT00940000153676.a ##22	ENSGT01030000234566.e.b.a.a	ENSGT00950000183045.C	ENSGT00940000153230.A	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT01020000230640.a	ENSGT00390000009472.e	ENSGT00390000017014.d.a	ENSGT00400000023423.b.b	ENSGT00400000023630	ENSGT00940000160995.a.i
Caprinae	ANCESTRAL SPECIES	31	ENSGT00940000154508.a.a.g	ENSGT00390000015511	ENSGT00390000003901	ENSGT00940000153232.a.b	ENSGT00940000159063	ENSGT00940000158457	ENSGT00520000055589.d	ENSGT00390000006550	ENSGT00390000015545	ENSGT00390000018086.z.h.a.b.a.b.a.c.a	ENSGT00940000158194	ENSGT00940000158376	ENSGT00940000162234	ENSGT00940000161922.i.b	ENSGT00410000025556.a.a.a.b	ENSGT00940000153676.a ##22	ENSGT01030000234566.e.b.a.a	ENSGT00950000183045.C	ENSGT00940000153230.A	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT01020000230640.a	ENSGT00940000167948	ENSGT00940000168173	ENSGT00400000023423.b.b	ENSGT01020000231074	ENSGT01020000230640.b
Rambouillet Sheep	MODERN SPECIES	18	PRIMPOL (ENSOARG00020013241)	CASP3 (ENSOARG00020013157)	IRF2 (ENSOARG00020013042)	ENPP6 (ENSOARG00020012535)	STOX2 (ENSOARG00020012344)	TRAPPC11 (ENSOARG00020011964)	RWDD4 (ENSOARG00020011673)	ENSOARG00020011629	ENSOARG00020011624	ING2 (ENSOARG00020025427)	CDKN2AIP (ENSOARG00020025421)	ENSOARG00020025415	ENSOARG00020025411	ENSOARG00020025406	WWC2 (ENSOARG00020025347)	DCTD (ENSOARG00020025328) ##22	TENM3 (ENSOARG00020025305)	AGA (ENSOARG00020025240)	NEIL3 (ENSOARG00020025196)	VEGFC (ENSOARG00020025167)	SPCS3 (ENSOARG00020025151)	ASB5 (ENSOARG00020025125)	SPATA4 (ENSOARG00020025097)	WDR17 (ENSOARG00020024883)	GPM6A (ENSOARG00020024811)	ENSOARG00020024792	ENSOARG00020024782	ENSOARG00020024770	ENSOARG00020024758	ENSOARG00020024749	ENSOARG00020024737
Goat	MODERN SPECIES	19	ACSL1 (ENSCHIG00000022508)	CENPU (ENSCHIG00000012552)	PRIMPOL (ENSCHIG00000016242)	CASP3 (ENSCHIG00000013628)	IRF2 (ENSCHIG00000017518)	ENPP6 (ENSCHIG00000003219)	STOX2 (ENSCHIG00000002126)	TRAPPC11 (ENSCHIG00000011228)	RWDD4 (ENSCHIG00000015219)	ENSCHIG00000004497	ING2 (ENSCHIG00000012188)	CDKN2AIP (ENSCHIG00000021180)	ENSCHIG00000008660	ENSCHIG00000005029	WWC2 (ENSCHIG00000016217)	DCTD (ENSCHIG00000010700) ##22	TENM3 (ENSCHIG00000011185)	ENSCHIG00000017110	ENSCHIG00000008084	ENSCHIG00000003428	ENSCHIG00000022230	AGA (ENSCHIG00000005958)	NEIL3 (ENSCHIG00000009157)	VEGFC (ENSCHIG00000024070)	SPCS3 (ENSCHIG00000018924)	ASB5 (ENSCHIG00000014279)	SPATA4 (ENSCHIG00000020672)	WDR17 (ENSCHIG00000024100)	GPM6A (ENSCHIG00000014802)	ENSCHIG00000016730	ENSCHIG00000021593
Bovinae	ANCESTRAL SPECIES	36	ENSGT00940000160388	ENSGT00940000154508.a.a.g	ENSGT00390000015511	ENSGT00390000003901	ENSGT00940000153232.a.b	ENSGT00940000159063	ENSGT00940000158457	ENSGT00520000055589.d	ENSGT00390000006550	ENSGT00390000015545	ENSGT00940000158194	ENSGT00940000158376	ENSGT00940000162234	ENSGT00940000161922.i.b	ENSGT00410000025556.a.a.a.b	ENSGT00940000153676.a ##22	ENSGT01030000234566.e.b.a.a	ENSGT00950000183045.C	ENSGT00940000153230.A	ENSGT00940000161381.f.b	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT01020000230640.a	ENSGT00390000009472.e	ENSGT00390000017014.d.a.b	ENSGT00400000023423.b.b	ENSGT00400000023423.a.b.b
Bos	ANCESTRAL SPECIES	33	ENSGT00940000160388	ENSGT00940000154508.a.a.g	ENSGT00390000015511	ENSGT00390000003901	ENSGT00940000153232.a.b	ENSGT00940000159063	ENSGT00940000158457	ENSGT00520000055589.d	ENSGT00390000006550	ENSGT00390000015545	ENSGT00940000158194	ENSGT00940000158376	ENSGT00940000162234	ENSGT00940000161922.i.b	ENSGT00410000025556.a.a.a.b	ENSGT00940000153676.a ##22	ENSGT01030000234566.e.b.a.a	ENSGT00950000183045.C	ENSGT00940000153230.A	ENSGT00940000161381.f.b	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT01020000230640.a	ENSGT00390000009472.e	ENSGT00390000017014.d.a.b	ENSGT00400000023423.a.b.b	ENSGT00400000023630.b
Bos_b	ANCESTRAL SPECIES	35	ENSGT00940000160388	ENSGT00940000154508.a.a.g	ENSGT00390000015511	ENSGT00390000003901	ENSGT00940000153232.a.b	ENSGT00940000159063	ENSGT00940000158457	ENSGT00520000055589.d	ENSGT00390000006550	ENSGT00390000015545	ENSGT00940000158194	ENSGT00940000158376	ENSGT00940000162234	ENSGT00940000161922.i.b	ENSGT00410000025556.a.a.a.b	ENSGT00940000153676.a ##22	ENSGT01030000234566.e.b.a.a	ENSGT00950000183045.C	ENSGT00940000153230.A	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT01020000230640.a	ENSGT00390000009472.e	ENSGT00390000017014.d.a.b	ENSGT00940000160995.a.i.b.b	ENSGT00400000023423.a.b.b	ENSGT00400000023630.b
Cow	MODERN SPECIES	19	HELT (ENSBTAG00000014704)	CENPU (ENSBTAG00000018864)	ACSL1 (ENSBTAG00000004344)	PRIMPOL (ENSBTAG00000018863)	CASP3 (ENSBTAG00000015874)	IRF2 (ENSBTAG00000010002)	ENPP6 (ENSBTAG00000011573)	STOX2 (ENSBTAG00000008886)	TRAPPC11 (ENSBTAG00000007422)	RWDD4 (ENSBTAG00000003081)	ING2 (ENSBTAG00000047706)	CDKN2AIP (ENSBTAG00000000957)	ENSBTAG00000051927	ENSBTAG00000052405	WWC2 (ENSBTAG00000012191)	DCTD (ENSBTAG00000020282) ##22	TENM3 (ENSBTAG00000021133)	ENSBTAG00000047749	AGA (ENSBTAG00000017085)	NEIL3 (ENSBTAG00000005825)	ENSBTAG00000054577	VEGFC (ENSBTAG00000014737)	SPCS3 (ENSBTAG00000014146)	ASB5 (ENSBTAG00000014143)	SPATA4 (ENSBTAG00000014141)	WDR17 (ENSBTAG00000014135)	GPM6A (ENSBTAG00000004231)	ENSBTAG00000055303	ENSBTAG00000054169	ENSBTAG00000053057	EBD (ENSBTAG00000033545)
Hybrid Bos Indicus	MODERN SPECIES	19	CASP3 (ENSBIXG00005007320)	ENSBIXG00005015516	IRF2 (ENSBIXG00005015556)	ENSBIXG00005006563	ENPP6 (ENSBIXG00005007140)	STOX2 (ENSBIXG00005015678)	TRAPPC11 (ENSBIXG00005015785)	RWDD4 (ENSBIXG00005015843)	ING2 (ENSBIXG00005015847)	CDKN2AIP (ENSBIXG00005015874)	ENSBIXG00005015879	ENSBIXG00005015891	ENSBIXG00005015897	ENSBIXG00005015900	WWC2 (ENSBIXG00005015995)	ENSBIXG00005016038 ##22	ENSBIXG00005016044	TENM3 (ENSBIXG00005016109)	AGA (ENSBIXG00005016212)	NEIL3 (ENSBIXG00005016309)	VEGFC (ENSBIXG00005016345)	SPCS3 (ENSBIXG00005016392)	ASB5 (ENSBIXG00005016430)	SPATA4 (ENSBIXG00005016480)	WDR17 (ENSBIXG00005016760)	ENSBIXG00005016840	GPM6A (ENSBIXG00005016935)	ENSBIXG00005016978	ENSBIXG00005002752	ENSBIXG00005007793	ENSBIXG00005017017
Bos_a	ANCESTRAL SPECIES	31	ENSGT00940000154622.a.a	ENSGT00940000160388	ENSGT00940000154508.a.a.g	ENSGT00390000015511	ENSGT00390000003901	ENSGT00940000153232.a.b	ENSGT00940000159063	ENSGT00940000158457	ENSGT00520000055589.d	ENSGT00390000006550	ENSGT00390000015545	ENSGT00940000158194	ENSGT00940000158376	ENSGT00940000162234	ENSGT00410000025556.a.a.a.b	ENSGT00940000153676.a ##22	ENSGT01030000234566.e.b.a.a	ENSGT00950000183045.C	ENSGT00940000153230.A	ENSGT00940000161381.f.b	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT01020000230640.a	ENSGT00390000009472.e
Wild yak	MODERN SPECIES	1498									TRAPPC11 (ENSBMUG00000001491)	RWDD4 (ENSBMUG00000001552)	ING2 (ENSBMUG00000001565)	CDKN2AIP (ENSBMUG00000001581)	ENSBMUG00000001597	ENSBMUG00000001607	WWC2 (ENSBMUG00000001701)	DCTD (ENSBMUG00000001778) ##22	TENM3 (ENSBMUG00000001827)
Domestic yak	MODERN SPECIES	20	CENPU (ENSBGRG00000020186)	PRIMPOL (ENSBGRG00000020486)	CASP3 (ENSBGRG00000020580)	IRF2 (ENSBGRG00000020711)	ENPP6 (ENSBGRG00000020769)	ENSBGRG00000020854	ENSBGRG00000020882	ENSBGRG00000020927	TRAPPC11 (ENSBGRG00000020963)	RWDD4 (ENSBGRG00000007035)	ING2 (ENSBGRG00000007303)	ENSBGRG00000007321	ENSBGRG00000007343	ENSBGRG00000007420	WWC2 (ENSBGRG00000007531)	DCTD (ENSBGRG00000007650) ##22	TENM3 (ENSBGRG00000007837)	ENSBGRG00000008180	ENSBGRG00000008196	AGA (ENSBGRG00000008287)	NEIL3 (ENSBGRG00000008579)	ENSBGRG00000008875	VEGFC (ENSBGRG00000008928)	SPCS3 (ENSBGRG00000008980)	ASB5 (ENSBGRG00000009021)	WDR17 (ENSBGRG00000009246)	SPATA4 (ENSBGRG00000010033)	GPM6A (ENSBGRG00000010237)	ENSBGRG00000010615	ENSBGRG00000010636	ENSBGRG00000010697
American bison	MODERN SPECIES	2986	ACSL1 (ENSBBBG00000014758)	CENPU (ENSBBBG00000014806)	PRIMPOL (ENSBBBG00000014841)	CASP3 (ENSBBBG00000014877)	IRF2 (ENSBBBG00000003678)	ENPP6 (ENSBBBG00000001236)	STOX2 (ENSBBBG00000001212)	TRAPPC11 (ENSBBBG00000001104)	RWDD4 (ENSBBBG00000001051)	ING2 (ENSBBBG00000001040)	CDKN2AIP (ENSBBBG00000001026)	ENSBBBG00000001017	ENSBBBG00000001010	ENSBBBG00000001002	ENSBBBG00000000989	DCTD (ENSBBBG00000000960) ##22	TENM3 (ENSBBBG00000000912)
Siberian musk deer	MODERN SPECIES	370	HELT (ENSMMSG00000018781)	ACSL1 (ENSMMSG00000018612)	CENPU (ENSMMSG00000018468)	PRIMPOL (ENSMMSG00000018428)	CASP3 (ENSMMSG00000018387)	IRF2 (ENSMMSG00000018352)	ENPP6 (ENSMMSG00000018328)	STOX2 (ENSMMSG00000018296)	TRAPPC11 (ENSMMSG00000018165)	ENSMMSG00000018100	ING2 (ENSMMSG00000018064)	CDKN2AIP (ENSMMSG00000018038)	ENSMMSG00000018020	ENSMMSG00000018007	WWC2 (ENSMMSG00000017895)	DCTD (ENSMMSG00000017817) ##22	TENM3 (ENSMMSG00000017737)
Yarkand deer	MODERN SPECIES	25	CFAP97 (ENSCHYG00000009938)	SLC25A4 (ENSCHYG00000009889)	HELT (ENSCHYG00000009820)	ACSL1 (ENSCHYG00000009253)	CENPU (ENSCHYG00000008853)	PRIMPOL (ENSCHYG00000008693)	CASP3 (ENSCHYG00000008657)	IRF2 (ENSCHYG00000024184)	ENPP6 (ENSCHYG00000024145)	STOX2 (ENSCHYG00000023957)	TRAPPC11 (ENSCHYG00000023408)	ENSCHYG00000023315	ING2 (ENSCHYG00000023296)	CDKN2AIP (ENSCHYG00000023261)	WWC2 (ENSCHYG00000022971)	DCTD (ENSCHYG00000022883) ##22	TENM3 (ENSCHYG00000022619)	ENSCHYG00000022559	ENSCHYG00000022545	AGA (ENSCHYG00000022427)	NEIL3 (ENSCHYG00000022358)	VEGFC (ENSCHYG00000022266)	ENSCHYG00000022200	SPCS3 (ENSCHYG00000022146)	ASB5 (ENSCHYG00000021912)	ENSCHYG00000021801	WDR17 (ENSCHYG00000021271)	GPM6A (ENSCHYG00000021180)	ENSCHYG00000021137	ENSCHYG00000021124	ENSCHYG00000021098
Camelidae	ANCESTRAL SPECIES	35	ENSGT00940000154622.a.a	ENSGT00940000160388	ENSGT00940000154508.a.a.g	ENSGT00390000015511	ENSGT00390000003901	ENSGT00940000153232.a.b	ENSGT00940000159063	ENSGT00940000158457	ENSGT00520000055589.d	ENSGT00390000006550	ENSGT00390000015545	ENSGT00940000158194	ENSGT00940000158376	ENSGT00940000162234	ENSGT00410000025556.a.a.a.b	ENSGT00940000153676.a ##22	ENSGT00910000148572	ENSGT01030000234566.e.b.a.a	ENSGT00950000183045.C	ENSGT00940000153230.A	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000160995.b	ENSGT00990000204018	ENSGT00390000009472	ENSGT00940000161948	ENSGT00940000163552.b
Alpaca	MODERN SPECIES	297										STOX2 (ENSVPAG00000005745)	TRAPPC11 (ENSVPAG00000005744)	RWDD4 (ENSVPAG00000005743)	ING2 (ENSVPAG00000005742)	CDKN2AIP (ENSVPAG00000005741)	WWC2 (ENSVPAG00000005737)	DCTD (ENSVPAG00000005736) ##22
Arabian camel	DUPLICATION
Arabian camel	MODERN SPECIES	18	HELT (ENSCDRG00005014948)	ACSL1 (ENSCDRG00005015058)	CENPU (ENSCDRG00005015460)	PRIMPOL (ENSCDRG00005015548)	CASP3 (ENSCDRG00005015657)	IRF2 (ENSCDRG00005015715)	ENPP6 (ENSCDRG00005015776)	STOX2 (ENSCDRG00005015820)	TRAPPC11 (ENSCDRG00005015900)	RWDD4 (ENSCDRG00005016171)	ING2 (ENSCDRG00005016228)	CDKN2AIP (ENSCDRG00005016254)	ENSCDRG00005016304	ENSCDRG00005016322	WWC2 (ENSCDRG00005016343)	DCTD (ENSCDRG00005016433) ##22	ENSCDRG00005016533	TENM3 (ENSCDRG00005016886)	AGA (ENSCDRG00005021201)	NEIL3 (ENSCDRG00005021208)	VEGFC (ENSCDRG00005021212)	SPCS3 (ENSCDRG00005021218)	ASB5 (ENSCDRG00005021226)	SPATA4 (ENSCDRG00005021237)	WDR17 (ENSCDRG00005021253)	GPM6A (ENSCDRG00005021281)	ENSCDRG00005021290	ENSCDRG00005021291	ENSCDRG00005021293	ENSCDRG00005021296	ENSCDRG00005021297
Arabian camel	MODERN SPECIES	22	DDX4 (ENSCDRG00005006799)	IL31RA (ENSCDRG00005006643)	IL6ST (ENSCDRG00005006461)	ANKRD55 (ENSCDRG00005006260)	MAP3K1 (ENSCDRG00005005939)	SETD9 (ENSCDRG00005005837)	MIER3 (ENSCDRG00005005727)	GPBP1 (ENSCDRG00005005650)	ACTBL2 (ENSCDRG00005005638)	PLK2 (ENSCDRG00005005540)	RAB3C (ENSCDRG00005005507)	PDE4D (ENSCDRG00005005353)	DEPDC1B (ENSCDRG00005005220)	ELOVL7 (ENSCDRG00005005194)	ERCC8 (ENSCDRG00005005179)	ENSCDRG00005005172 ##22	NDUFAF2 (ENSCDRG00005005158)	SMIM15 (ENSCDRG00005008061)	ZSWIM6 (ENSCDRG00005007218)	KIF2A (ENSCDRG00005007087)	DIMT1 (ENSCDRG00005007021)	IPO11 (ENSCDRG00005006706)	ENSCDRG00005006684	HTR1A (ENSCDRG00005006670)	RNF180 (ENSCDRG00005006561)	RGS7BP (ENSCDRG00005006511)	SHISAL2B (ENSCDRG00005006470)	SREK1IP1 (ENSCDRG00005006438)	CWC27 (ENSCDRG00005006311)	ADAMTS6 (ENSCDRG00005006170)	CENPK (ENSCDRG00005006110)
Laurasiatheria_b	ANCESTRAL SPECIES	8	ENSGT00940000160388	ENSGT00940000154508.a.a	ENSGT00390000015511	ENSGT00390000003901	ENSGT00940000153232.a.b	ENSGT00940000159063	ENSGT00940000158457	ENSGT00520000055589.d	ENSGT00390000006550	ENSGT00390000015545	ENSGT00940000158194	ENSGT00940000158376	ENSGT00940000162234	ENSGT00940000161922.i.b	ENSGT00410000025556.a.a.a.b	ENSGT00940000153676.a ##22	ENSGT00910000148572	ENSGT01030000234566.e.b.a.a	ENSGT00950000183045.C	ENSGT00940000153230.A	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000160995.b	ENSGT00990000204018	ENSGT00390000009472	ENSGT00940000163552.b	ENSGT00940000161948
Laurasiatheria_c	ANCESTRAL SPECIES	26	ENSGT00940000160388	ENSGT00940000154508.a.a	ENSGT00390000015511	ENSGT00390000003901	ENSGT00940000153232.a.b	ENSGT00940000159063	ENSGT00940000158457	ENSGT00520000055589.d	ENSGT00390000006550	ENSGT00390000015545	ENSGT00940000158194	ENSGT00940000158376	ENSGT00940000162234	ENSGT00940000161922.i.b	ENSGT00410000025556.a.a.a.b	ENSGT00940000153676.a ##22	ENSGT00910000148572	ENSGT01030000234566.e.b.a.a	ENSGT00950000183045.C	ENSGT00940000153230.A	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000160995.b	ENSGT00990000204018	ENSGT00390000009472	ENSGT00940000163552.b	ENSGT00940000161948
Chiroptera	ANCESTRAL SPECIES	32	ENSGT00940000160388	ENSGT00940000154508.a.a	ENSGT00390000015511	ENSGT00390000003901	ENSGT00940000153232.a.b	ENSGT00940000159063	ENSGT00940000158457	ENSGT00520000055589.d	ENSGT00390000006550	ENSGT00390000015545	ENSGT00940000158194	ENSGT00940000158376	ENSGT00940000162234	ENSGT00940000161922.i.b	ENSGT00410000025556.a.a.a.b	ENSGT00940000153676.a ##22	ENSGT00910000148572	ENSGT01030000234566.e.b.a.a	ENSGT00950000183045.C	ENSGT00940000153230.A	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000160995.b	ENSGT00990000204018	ENSGT00940000167948	ENSGT00390000009472	ENSGT00940000163552.b
Megabat	MODERN SPECIES	7835																DCTD (ENSPVAG00000007270) ##22
Microchiroptera	ANCESTRAL SPECIES	33	ENSGT00940000160388	ENSGT00940000154508.a.a	ENSGT00390000015511	ENSGT00390000003901	ENSGT00940000153232.a.b	ENSGT00940000159063	ENSGT00940000158457	ENSGT00520000055589.d	ENSGT00390000006550	ENSGT00390000015545	ENSGT00940000158194	ENSGT00940000158376	ENSGT00940000162234	ENSGT00940000161922.i.b	ENSGT00410000025556.a.a.a.b	ENSGT00940000153676.a ##22	ENSGT00910000148572	ENSGT01030000234566.e.b.a.a	ENSGT00950000183045.C	ENSGT00940000153230.A	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000160995.b	ENSGT00990000204018	ENSGT00940000167948	ENSGT00390000009472	ENSGT00940000163552.b
Greater horseshoe bat	MODERN SPECIES	22	ACSL1 (ENSRFEG00010015807)	CENPU (ENSRFEG00010016006)	PRIMPOL (ENSRFEG00010016194)	CASP3 (ENSRFEG00010016238)	IRF2 (ENSRFEG00010016324)	ENPP6 (ENSRFEG00010016393)	STOX2 (ENSRFEG00010016438)	TRAPPC11 (ENSRFEG00010016462)	RWDD4 (ENSRFEG00010016789)	ING2 (ENSRFEG00010016836)	CDKN2AIP (ENSRFEG00010016870)	ENSRFEG00010016958	ENSRFEG00010016974	WWC2 (ENSRFEG00010016991)	ENSRFEG00010017067	DCTD (ENSRFEG00010017093) ##22	ENSRFEG00010017163	TENM3 (ENSRFEG00010017187)	ENSRFEG00010017266	AGA (ENSRFEG00010017284)	NEIL3 (ENSRFEG00010017333)	VEGFC (ENSRFEG00010017460)	SPCS3 (ENSRFEG00010017637)	ASB5 (ENSRFEG00010017669)	SPATA4 (ENSRFEG00010017719)	WDR17 (ENSRFEG00010017869)	GPM6A (ENSRFEG00010018017)	ENSRFEG00010018092	ENSRFEG00010018122	ENSRFEG00010018148	ENSRFEG00010018180
Microbat	DUPLICATION
Microbat	MODERN SPECIES	2776																ENSMLUG00000025880 ##22
Microbat	MODERN SPECIES	1091																DCTD (ENSMLUG00000001691) ##22	TENM3 (ENSMLUG00000008893)	ENSMLUG00000026930
Equus	ANCESTRAL SPECIES	28	ENSGT00940000154508.a.a	ENSGT00390000015511	ENSGT00390000003901	ENSGT00940000153232.a.b	ENSGT00940000169716	ENSGT00940000159063	ENSGT00940000158457	ENSGT00520000055589.d	ENSGT00390000006550	ENSGT00390000015545	ENSGT00940000158194	ENSGT00940000158376	ENSGT00940000162234	ENSGT00940000161922.i.b	ENSGT00410000025556.a.a.a.b	ENSGT00940000153676.a ##22	ENSGT01030000234566.e.b.a.a	ENSGT00950000183045.C	ENSGT00940000153230.A	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000160995.b	ENSGT00990000204018	ENSGT00390000009472	ENSGT00940000163552.b	ENSGT00910000144208	ENSGT00940000163552.a
Donkey	MODERN SPECIES	19	CENPU (ENSEASG00005018407)	PRIMPOL (ENSEASG00005018412)	CASP3 (ENSEASG00005018416)	ENSEASG00005018419	ENSEASG00005018420	IRF2 (ENSEASG00005018423)	ENSEASG00005025603	ENPP6 (ENSEASG00005018425)	STOX2 (ENSEASG00005018429)	TRAPPC11 (ENSEASG00005018432)	RWDD4 (ENSEASG00005018438)	ING2 (ENSEASG00005034685)	CDKN2AIP (ENSEASG00005018444)	ENSEASG00005035036	WWC2 (ENSEASG00005018450)	ENSEASG00005024583 ##22	TENM3 (ENSEASG00005018486)	ENSEASG00005018558	AGA (ENSEASG00005022270)	NEIL3 (ENSEASG00005022272)	VEGFC (ENSEASG00005022274)	SPCS3 (ENSEASG00005022278)	ASB5 (ENSEASG00005022280)	SPATA4 (ENSEASG00005022285)	ENSEASG00005022293	ENSEASG00005022306	ENSEASG00005022307	ENSEASG00005022312	ENSEASG00005022310	ENSEASG00005023861	ENSEASG00005023643
Horse	DUPLICATION
Horse	MODERN SPECIES	19	CENPU (ENSECAG00000016722)	PRIMPOL (ENSECAG00000020522)	CASP3 (ENSECAG00000022197)	ENSECAG00000028316	IRF2 (ENSECAG00000007508)	ENPP6 (ENSECAG00000011627)	STOX2 (ENSECAG00000012786)	ENSECAG00000036009	TRAPPC11 (ENSECAG00000015348)	RWDD4 (ENSECAG00000011336)	ING2 (ENSECAG00000015406)	CDKN2AIP (ENSECAG00000015905)	ENSECAG00000017161	ENSECAG00000006075	WWC2 (ENSECAG00000017226)	DCTD (ENSECAG00000017516) ##22	TENM3 (ENSECAG00000020433)	ENSECAG00000051167	AGA (ENSECAG00000000085)	NEIL3 (ENSECAG00000009121)	ENSECAG00000054402	VEGFC (ENSECAG00000012133)	SPCS3 (ENSECAG00000016480)	ASB5 (ENSECAG00000016644)	SPATA4 (ENSECAG00000000143)	WDR17 (ENSECAG00000006722)	GPM6A (ENSECAG00000016756)	ENSECAG00000037282	ENSECAG00000033476	ENSECAG00000033712	ENSECAG00000022947
Horse	MODERN SPECIES	27	RASSF3 (ENSECAG00000023140)	TBK1 (ENSECAG00000020820)	XPOT (ENSECAG00000018336)	C6H12orf56 (ENSECAG00000016235)	KICS2 (ENSECAG00000016164)	SRGAP1 (ENSECAG00000011462)	RXYLT1 (ENSECAG00000011333)	ENSECAG00000057651	AVPR1A (ENSECAG00000010418)	PPM1H (ENSECAG00000008975)	ENSECAG00000053574	MON2 (ENSECAG00000024896)	USP15 (ENSECAG00000022494)	TAFA2 (ENSECAG00000022465)	TAFA2 (ENSECAG00000057416)	ENSECAG00000000947 ##22	ENSECAG00000044713	ENSECAG00000052567	SLC16A7 (ENSECAG00000021778)	LRIG3 (ENSECAG00000020312)	ATP23 (ENSECAG00000019876)	CTDSP2 (ENSECAG00000018788)	AVIL (ENSECAG00000013528)	METTL1 (ENSECAG00000009016)	TSFM (ENSECAG00000010520)	CYP27B1 (ENSECAG00000025143)	MARCHF9 (ENSECAG00000025138)	CDK4 (ENSECAG00000025015)	TSPAN31 (ENSECAG00000024982)	ENSECAG00000057561	AGAP2 (ENSECAG00000023952)
Carnivora	ANCESTRAL SPECIES	5	ENSGT00940000160388	ENSGT00940000154508.a.a	ENSGT00390000015511	ENSGT00390000003901	ENSGT00940000153232.a.b	ENSGT00940000159063	ENSGT00940000158457	ENSGT00520000055589.d	ENSGT00390000006550	ENSGT00390000015545	ENSGT00940000158194	ENSGT00940000158376	ENSGT00940000162234	ENSGT00940000161922.i.b	ENSGT00410000025556.a.a.a.b	ENSGT00940000153676.a ##22	ENSGT00910000148572	ENSGT01030000234566.e.b.a.a	ENSGT00950000183045.C	ENSGT00940000153230.A	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000160995.b	ENSGT00990000204018	ENSGT00390000009472	ENSGT00940000163552.b	ENSGT00940000154559.B
Felidae	ANCESTRAL SPECIES	4	ENSGT00940000160388	ENSGT00940000154508.a.a	ENSGT00390000015511	ENSGT00390000003901	ENSGT00940000153232.a.b	ENSGT00940000159063	ENSGT00940000158457	ENSGT00520000055589.d	ENSGT00390000006550	ENSGT00390000015545.m	ENSGT00940000158194	ENSGT00940000158376	ENSGT00940000162234.i	ENSGT00940000162234.j	ENSGT00410000025556.a.a.a.b	ENSGT00940000153676.a ##22	ENSGT00910000148572	ENSGT01030000234566.e.b.a.a	ENSGT00950000183045.C	ENSGT00940000153230.A	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000160995.b	ENSGT00990000204018	ENSGT00390000009472	ENSGT00940000163552.b	ENSGT00940000154559.B
Panthera	ANCESTRAL SPECIES	5	ENSGT00390000015511	ENSGT00390000003901	ENSGT00940000155186.r	ENSGT00940000153232.a.b	ENSGT00940000159063	ENSGT00940000158457	ENSGT00520000055589.d	ENSGT00390000006550	ENSGT00390000015545.m	ENSGT00940000158194	ENSGT00940000158376	ENSGT00940000162234.i	ENSGT00940000162234.j	ENSGT00940000161922.i.b	ENSGT00410000025556.a.a.a.b	ENSGT00940000153676.a ##22	ENSGT00910000148572	ENSGT01030000234566.e.b.a.a	ENSGT00950000183045.C	ENSGT00940000153230.A	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000160995.b	ENSGT00990000204018	ENSGT00390000009472	ENSGT00940000163552.b	ENSGT00940000163626
Panthera_a	ANCESTRAL SPECIES	2	ENSGT00390000015511	ENSGT00390000003901	ENSGT00940000155186.r	ENSGT00940000153232.a.b	ENSGT00940000159063	ENSGT00940000158457	ENSGT00520000055589.d	ENSGT00390000006550	ENSGT00390000015545.m	ENSGT00940000158194	ENSGT00940000158376	ENSGT00940000162234.i	ENSGT00940000162234.j	ENSGT00940000161922.i.b	ENSGT00410000025556.a.a.a.b	ENSGT00940000153676.a ##22	ENSGT00910000148572	ENSGT01030000234566.e.b.a.a	ENSGT00950000183045.C	ENSGT00940000153230.A	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000160995.b	ENSGT00990000204018	ENSGT00390000009472	ENSGT00940000163552.b	ENSGT00940000163626
leopard	MODERN SPECIES	90	ACSL1 (ENSPPRG00000022163)	CENPU (ENSPPRG00000018742)	PRIMPOL (ENSPPRG00000018254)	ENSPPRG00000015036	CASP3 (ENSPPRG00000014967)	IRF2 (ENSPPRG00000014690)	ENPP6 (ENSPPRG00000014678)	STOX2 (ENSPPRG00000013108)	TRAPPC11 (ENSPPRG00000013060)	ENSPPRG00000012348	ING2 (ENSPPRG00000012156)	CDKN2AIP (ENSPPRG00000012146)	ENSPPRG00000020276	ENSPPRG00000020260	WWC2 (ENSPPRG00000012093)	DCTD (ENSPPRG00000011092) ##22	ENSPPRG00000020057	TENM3 (ENSPPRG00000010922)	ENSPPRG00000010634
lion	MODERN SPECIES	4	HELT (ENSPLOG00000015248)	ENSPLOG00000015185	ACSL1 (ENSPLOG00000014911)	ENSPLOG00000014746	PRIMPOL (ENSPLOG00000014656)	CASP3 (ENSPLOG00000014571)	IRF2 (ENSPLOG00000014506)	ENPP6 (ENSPLOG00000014451)	STOX2 (ENSPLOG00000014268)	TRAPPC11 (ENSPLOG00000014085)	RWDD4 (ENSPLOG00000013987)	ING2 (ENSPLOG00000013944)	CDKN2AIP (ENSPLOG00000013842)	ENSPLOG00000013818	WWC2 (ENSPLOG00000013387)	DCTD (ENSPLOG00000013305) ##22	TENM3 (ENSPLOG00000013094)	ENSPLOG00000013048	ENSPLOG00000013024	AGA (ENSPLOG00000012952)	NEIL3 (ENSPLOG00000012822)	VEGFC (ENSPLOG00000012772)	SPCS3 (ENSPLOG00000012719)	ASB5 (ENSPLOG00000012496)	SPATA4 (ENSPLOG00000012353)	WDR17 (ENSPLOG00000011624)	GPM6A (ENSPLOG00000011461)	ENSPLOG00000011418	ENSPLOG00000011392	ENSPLOG00000011358	ENSPLOG00000011312
Tiger	MODERN SPECIES	138										RWDD4 (ENSPTIG00000012549)	ING2 (ENSPTIG00000012657)	CDKN2AIP (ENSPTIG00000012665)	ENSPTIG00000008813	ENSPTIG00000012751	ENSPTIG00000012771	DCTD (ENSPTIG00000012783) ##22	ENSPTIG00000008817	TENM3 (ENSPTIG00000012814)	ENSPTIG00000012914	AGA (ENSPTIG00000012922)	NEIL3 (ENSPTIG00000012966)	VEGFC (ENSPTIG00000013004)	SPCS3 (ENSPTIG00000013015)	ASB5 (ENSPTIG00000013049)	SPATA4 (ENSPTIG00000013173)	WDR17 (ENSPTIG00000013197)	GPM6A (ENSPTIG00000013275)	ENSPTIG00000013309	ENSPTIG00000008822	ENSPTIG00000013317	ENSPTIG00000013323
Cat	MODERN SPECIES	235	CENPU (ENSFCAG00000005075)	ENSFCAG00000052999	ACSL1 (ENSFCAG00000005085)	PRIMPOL (ENSFCAG00000027833)	CASP3 (ENSFCAG00000025408)	IRF2 (ENSFCAG00000030144)	ENPP6 (ENSFCAG00000001574)	STOX2 (ENSFCAG00000014995)	TRAPPC11 (ENSFCAG00000030217)	RWDD4 (ENSFCAG00000024337)	ING2 (ENSFCAG00000028949)	CDKN2AIP (ENSFCAG00000026739)	ENSFCAG00000042436	ENSFCAG00000042875	WWC2 (ENSFCAG00000003067)	DCTD (ENSFCAG00000044388) ##22	TENM3 (ENSFCAG00000022648)	ENSFCAG00000042450	AGA (ENSFCAG00000022643)	NEIL3 (ENSFCAG00000004956)	VEGFC (ENSFCAG00000007996)	ENSFCAG00000050236	SPCS3 (ENSFCAG00000044774)	ASB5 (ENSFCAG00000002494)	SPATA4 (ENSFCAG00000022048)	WDR17 (ENSFCAG00000002493)	GPM6A (ENSFCAG00000030755)	ENSFCAG00000037843	ENSFCAG00000037534	ENSFCAG00000040610	ENSFCAG00000036103
Caniformia	ANCESTRAL SPECIES	28	ENSGT00940000160388	ENSGT00940000154508.a.a	ENSGT00390000015511	ENSGT00390000003901	ENSGT00940000153232.a.b	ENSGT00940000159063	ENSGT00940000158457	ENSGT00520000055589.d	ENSGT00390000006550	ENSGT00390000015545	ENSGT00940000158194	ENSGT00940000158376	ENSGT00940000162234	ENSGT00940000161922.i.b	ENSGT00410000025556.a.a.a.b	ENSGT00940000153676.a ##22	ENSGT00940000171084	ENSGT00910000148572	ENSGT01030000234566.e.b.a.a	ENSGT00950000183045.C	ENSGT00940000153230.A	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000160995.b	ENSGT00990000204018	ENSGT00390000009472	ENSGT00940000163552.b
Canidae	ANCESTRAL SPECIES	53	ENSGT00940000160388	ENSGT00940000154508.a.a	ENSGT00390000015511	ENSGT00390000003901	ENSGT00940000153232.a.b	ENSGT00940000159063	ENSGT00940000158457	ENSGT00520000055589.d	ENSGT00390000006550	ENSGT00390000015545	ENSGT00940000158194	ENSGT00940000158376	ENSGT00940000162234	ENSGT00940000161922.i.b	ENSGT00410000025556.a.a.a.b	ENSGT00940000153676.a ##22	ENSGT00940000171084	ENSGT00910000148572	ENSGT01030000234566.e.b.a.a	ENSGT00530000065303.l	ENSGT00950000183045.C	ENSGT00940000153230.A	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000160995.b	ENSGT00990000204018	ENSGT00390000009472
Canis_lupus	ANCESTRAL SPECIES	29	ENSGT00940000160388	ENSGT00940000154508.a.a	ENSGT00390000015511	ENSGT00390000003901	ENSGT00940000153232.a.b	ENSGT00940000159063	ENSGT00940000158457	ENSGT00520000055589.d	ENSGT00390000006550	ENSGT00390000015545.o	ENSGT00940000158194	ENSGT00940000158376	ENSGT00940000162234	ENSGT00940000161922.i.b	ENSGT00410000025556.a.a.a.b	ENSGT00940000153676.a ##22	ENSGT00940000171084	ENSGT01030000234566.e.b.a.a	ENSGT00530000065303.l	ENSGT00950000183045.C	ENSGT00940000153230.A	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000160995.b	ENSGT00990000204018	ENSGT00390000009472	ENSGT00940000154559.A
Dog	MODERN SPECIES	7	HELT (ENSCAFG00845022921)	ACSL1 (ENSCAFG00845023265)	CENPU (ENSCAFG00845014959)	PRIMPOL (ENSCAFG00845015139)	CASP3 (ENSCAFG00845015288)	IRF2 (ENSCAFG00845015393)	ENPP6 (ENSCAFG00845015469)	STOX2 (ENSCAFG00845015568)	TRAPPC11 (ENSCAFG00845015913)	RWDD4 (ENSCAFG00845016321)	ING2 (ENSCAFG00845016404)	CDKN2AIP (ENSCAFG00845016463)	CLDN24 (ENSCAFG00845016547)	ENSCAFG00845016592	WWC2 (ENSCAFG00845016816)	DCTD (ENSCAFG00845017237) ##22	ENSCAFG00845017499	TENM3 (ENSCAFG00845017689)	ENSCAFG00845018229	ENSCAFG00845018256	AGA (ENSCAFG00845018294)	NEIL3 (ENSCAFG00845018393)	VEGFC (ENSCAFG00845018800)	SPCS3 (ENSCAFG00845018970)	ASB5 (ENSCAFG00845019124)	SPATA4 (ENSCAFG00845019396)	WDR17 (ENSCAFG00845019561)	GPM6A (ENSCAFG00845020725)	ENSCAFG00845020859	ENSCAFG00845020898	ENSCAFG00845020938
Dingo	MODERN SPECIES	73	ENSCAFG00020001873	ACSL1 (ENSCAFG00020001881)	CENPU (ENSCAFG00020001909)	PRIMPOL (ENSCAFG00020001918)	CASP3 (ENSCAFG00020001926)	IRF2 (ENSCAFG00020001931)	ENPP6 (ENSCAFG00020001941)	STOX2 (ENSCAFG00020001963)	TRAPPC11 (ENSCAFG00020001993)	ENSCAFG00020002212	ING2 (ENSCAFG00020002237)	CDKN2AIP (ENSCAFG00020002238)	ENSCAFG00020002243	ENSCAFG00020002247	WWC2 (ENSCAFG00020002263)	DCTD (ENSCAFG00020002572) ##22	ENSCAFG00020002597	TENM3 (ENSCAFG00020002607)	ENSCAFG00020002720
Red fox	MODERN SPECIES	117																DCTD (ENSVVUG00000012337) ##22	ENSVVUG00000012354	ENSVVUG00000012365	TENM3 (ENSVVUG00000012380)	ENSVVUG00000012448	ENSVVUG00000012484	ENSVVUG00000012490	ENSVVUG00000012522	ENSVVUG00000012528	ENSVVUG00000012562	AGA (ENSVVUG00000012575)	ENSVVUG00000012591	NEIL3 (ENSVVUG00000012598)	VEGFC (ENSVVUG00000012617)	SPCS3 (ENSVVUG00000012635)	ASB5 (ENSVVUG00000012644)
Caniformia_b	ANCESTRAL SPECIES	30	ENSGT00940000154037.C.f	ENSGT00940000154508.a.a	ENSGT00390000015511	ENSGT00390000003901	ENSGT00940000153232.a.b	ENSGT00940000159063	ENSGT00940000158457	ENSGT00520000055589.d	ENSGT00390000006550	ENSGT00390000015545	ENSGT00940000158194	ENSGT00940000158376	ENSGT00940000162234	ENSGT00940000161922.i.b	ENSGT00410000025556.a.a.a.b	ENSGT00940000153676.a ##22	ENSGT00940000171084	ENSGT01030000234566.e.b.a.a	ENSGT00950000183045.C	ENSGT00940000153230.A	ENSGT00940000156167.b	ENSGT00390000009223.b	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000160995.b	ENSGT00990000204018	ENSGT00390000009472	ENSGT00940000163552.b	ENSGT00940000161948
Mustelinae	ANCESTRAL SPECIES	84	ENSGT00940000154037.C.f	ENSGT00940000154508.a.a	ENSGT00390000015511	ENSGT00390000003901	ENSGT00940000153232.a.b	ENSGT00940000159063	ENSGT00940000158457	ENSGT00520000055589.d	ENSGT00390000006550	ENSGT00390000015545	ENSGT00940000158194	ENSGT00940000158376	ENSGT00940000162234	ENSGT00940000161922.i.b	ENSGT00410000025556.a.a.a.b	ENSGT00940000153676.a ##22	ENSGT00940000171084	ENSGT01030000234566.e.b.a.a
American mink	MODERN SPECIES	30	ENSNVIG00000005622	ACSL1 (ENSNVIG00000005210)	CENPU (ENSNVIG00000005169)	PRIMPOL (ENSNVIG00000005096)	CASP3 (ENSNVIG00000005055)	IRF2 (ENSNVIG00000005024)	ENPP6 (ENSNVIG00000005010)	STOX2 (ENSNVIG00000004997)	TRAPPC11 (ENSNVIG00000004798)	RWDD4 (ENSNVIG00000004735)	ING2 (ENSNVIG00000004724)	CDKN2AIP (ENSNVIG00000004709)	ENSNVIG00000004704	ENSNVIG00000004693	WWC2 (ENSNVIG00000004645)	DCTD (ENSNVIG00000004613) ##22	ENSNVIG00000004609	TENM3 (ENSNVIG00000004576)	ENSNVIG00000004562
Ferret	MODERN SPECIES	221	CENPU (ENSMPUG00000011102)	PRIMPOL (ENSMPUG00000011092)	CASP3 (ENSMPUG00000011084)	ENSMPUG00000011080	IRF2 (ENSMPUG00000011075)	ENPP6 (ENSMPUG00000011072)	STOX2 (ENSMPUG00000011066)	TRAPPC11 (ENSMPUG00000011056)	RWDD4 (ENSMPUG00000011048)	ING2 (ENSMPUG00000011044)	CDKN2AIP (ENSMPUG00000011042)	ENSMPUG00000019943	ENSMPUG00000019942	WWC2 (ENSMPUG00000011033)	ENSMPUG00000011025	DCTD (ENSMPUG00000011016) ##22	ENSMPUG00000011004	TENM3 (ENSMPUG00000010987)	ENSMPUG00000010979
Ursidae	ANCESTRAL SPECIES	38	ENSGT00390000015511	ENSGT00390000003901	ENSGT00940000153232.a.b	ENSGT00940000159063	ENSGT00940000158457	ENSGT00520000055589.d	ENSGT00390000006550	ENSGT00390000015545	ENSGT00940000158194	ENSGT00950000183164.E.c.b.a	ENSGT00940000158376	ENSGT00940000162234	ENSGT00940000161922.i.b	ENSGT00410000025556.a.a.a.b	ENSGT00390000011010.b.h.a.b	ENSGT00940000153676.a ##22	ENSGT01030000234566.e.b.a.a	ENSGT00950000183045.C	ENSGT00940000153230.A	ENSGT00940000156167.b	ENSGT00390000009223.b	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000160995.b	ENSGT00990000204018	ENSGT00390000009472	ENSGT00940000163552.b
Giant Panda	MODERN SPECIES	9	PRIMPOL (ENSAMEG00000008468)	CASP3 (ENSAMEG00000008419)	ENSAMEG00000026874	IRF2 (ENSAMEG00000008380)	ENPP6 (ENSAMEG00000008369)	STOX2 (ENSAMEG00000008361)	TRAPPC11 (ENSAMEG00000008280)	RWDD4 (ENSAMEG00000008268)	ING2 (ENSAMEG00000008264)	ENSAMEG00000008262	CDKN2AIP (ENSAMEG00000008216)	ENSAMEG00000031514	ENSAMEG00000019395	WWC2 (ENSAMEG00000008133)	ENSAMEG00000019360	DCTD (ENSAMEG00000028421) ##22	ENSAMEG00000007878	TENM3 (ENSAMEG00000007908)	ENSAMEG00000030313 ##29	AGA (ENSAMEG00000003696)	NEIL3 (ENSAMEG00000003715)	VEGFC (ENSAMEG00000017130)	SPCS3 (ENSAMEG00000006235)	ASB5 (ENSAMEG00000008769)	SPATA4 (ENSAMEG00000008788)	ENSAMEG00000008799	ENSAMEG00000028936	ENSAMEG00000008077	ENSAMEG00000008076	ENSAMEG00000018588	ENSAMEG00000026340
Ursus	ANCESTRAL SPECIES	238							ENSGT00390000006550	ENSGT00390000015545	ENSGT00940000158194	ENSGT00950000183164.E.c.b.a	ENSGT00940000158376	ENSGT00940000162234	ENSGT00940000161922.i.b	ENSGT00410000025556.a.a.a.b	ENSGT00390000011010.b.h.a.b	ENSGT00940000153676.a ##22	ENSGT00950000186393	ENSGT01030000234566.e.b.a.a
Polar bear	MODERN SPECIES	331									TRAPPC11 (ENSUMAG00000021283)	RWDD4 (ENSUMAG00000021296)	ING2 (ENSUMAG00000021306)	CDKN2AIP (ENSUMAG00000021312)	ENSUMAG00000021316	WWC2 (ENSUMAG00000021348)	ENSUMAG00000021454	DCTD (ENSUMAG00000021458) ##22	ENSUMAG00000021461	TENM3 (ENSUMAG00000021514)	ENSUMAG00000021626	ENSUMAG00000021643	ENSUMAG00000021645
American black bear	MODERN SPECIES	1646																DCTD (ENSUAMG00000013234) ##22	ENSUAMG00000013233	TENM3 (ENSUAMG00000013220)
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00940000153676.a ##22
Common shrew	MODERN SPECIES	1996																ENSSARG00000014310 ##22
Hedgehog	MODERN SPECIES	2689																DCTD (ENSEEUG00000006654) ##22
Marsupialia	ANCESTRAL SPECIES	7	ENSGT00940000154508.a.a	ENSGT00390000015511	ENSGT00390000003901	ENSGT00940000153232.a.b	ENSGT00940000159063	ENSGT00940000158457	ENSGT00520000055589.d	ENSGT00390000006550	ENSGT00390000014316.c.b.`b	ENSGT00390000015545	ENSGT00940000158194	ENSGT00940000158376	ENSGT00940000162234.a	ENSGT00940000161922.i.b	ENSGT00410000025556.a.a.a.b	ENSGT00940000153676.a ##22	ENSGT01030000234566.e.b.a.a	ENSGT00950000183045.C	ENSGT00940000153230.A	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000158368	ENSGT00940000154593.a.b	ENSGT00390000009873	ENSGT00940000158356	ENSGT00940000160772	ENSGT00390000009191
Opossum	MODERN SPECIES	4	ENSMODG00000051240	IRF2 (ENSMODG00000004393)	ENPP6 (ENSMODG00000004339)	ENSMODG00000029566	STOX2 (ENSMODG00000004310)	ENSMODG00000051244	TRAPPC11 (ENSMODG00000004292)	ENSMODG00000025078	RWDD4 (ENSMODG00000004223)	ENSMODG00000047937	ING2 (ENSMODG00000004200)	CDKN2AIP (ENSMODG00000004192)	ENSMODG00000025075	ENSMODG00000025074	WWC2 (ENSMODG00000004171)	DCTD (ENSMODG00000004124) ##22	TENM3 (ENSMODG00000004107)	ENSMODG00000051463	AGA (ENSMODG00000003821)	NEIL3 (ENSMODG00000003813)	VEGFC (ENSMODG00000003799)	SPCS3 (ENSMODG00000040442)	ASB5 (ENSMODG00000003766)	ENSMODG00000003744	WDR17 (ENSMODG00000003734)	GPM6A (ENSMODG00000003704)	GLRA3 (ENSMODG00000003650)	ENSMODG00000045340	HPGD (ENSMODG00000050122)	ENSMODG00000048508	ENSMODG00000003603
Marsupialia_b	ANCESTRAL SPECIES	8	ENSGT00940000154508.a.a	ENSGT00390000015511	ENSGT00390000003901	ENSGT00940000153232.a.b	ENSGT00940000159063	ENSGT00940000158457	ENSGT00520000055589.d	ENSGT00390000006550	ENSGT00390000014316.c.b.`b	ENSGT00390000015545	ENSGT00940000158194	ENSGT00940000158376	ENSGT00940000162234.a	ENSGT00940000161922.i.b	ENSGT00410000025556.a.a.a.b	ENSGT00940000153676.a ##22	ENSGT01030000234566.e.b.a.a	ENSGT00950000183045.C	ENSGT00940000153230.A	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000158368	ENSGT00940000154593.a.b	ENSGT00390000009873	ENSGT00940000158356	ENSGT00940000160772	ENSGT00390000009191
Tasmanian devil	DUPLICATION
Tasmanian devil	MODERN SPECIES	5	ENSSHAG00000030602	ACSL1 (ENSSHAG00000007860)	ENSSHAG00000032064	PRIMPOL (ENSSHAG00000008875)	ENSSHAG00000027604	IRF2 (ENSSHAG00000025211)	ENPP6 (ENSSHAG00000024436)	STOX2 (ENSSHAG00000009529)	TRAPPC11 (ENSSHAG00000001108)	RWDD4 (ENSSHAG00000025756)	ING2 (ENSSHAG00000025479)	CDKN2AIP (ENSSHAG00000031412)	ENSSHAG00000013799	ENSSHAG00000013806	WWC2 (ENSSHAG00000013834)	ENSSHAG00000027006 ##22	TENM3 (ENSSHAG00000015658)	ENSSHAG00000028695	ENSSHAG00000018103	ENSSHAG00000021250	AGA (ENSSHAG00000006591)	NEIL3 (ENSSHAG00000007680)	VEGFC (ENSSHAG00000013634)	SPCS3 (ENSSHAG00000026917)	ASB5 (ENSSHAG00000015114)	ENSSHAG00000015449	WDR17 (ENSSHAG00000015564)	GPM6A (ENSSHAG00000016711)	GLRA3 (ENSSHAG00000028551)	HPGD (ENSSHAG00000008831)	ENSSHAG00000010919
Tasmanian devil	MODERN SPECIES	2	ENSSHAG00000030102	ENSSHAG00000023777	ENSSHAG00000020927	ENSSHAG00000029589	C3orf38 (ENSSHAG00000008243)	ZNF654 (ENSSHAG00000030905)	CGGBP1 (ENSSHAG00000030050)	HTR1F (ENSSHAG00000023648)	ENSSHAG00000008747	CHMP2B (ENSSHAG00000023278)	ENSSHAG00000001836	ENSSHAG00000021081	ENSSHAG00000013236	ENSSHAG00000016491	ENSSHAG00000000936	ENSSHAG00000003799 ##22	ENSSHAG00000030581	ENSSHAG00000025373	ENSSHAG00000003760	ENSSHAG00000032388	ENSSHAG00000022641	RNF149 (ENSSHAG00000007065)	MAP4K4 (ENSSHAG00000002416)	ENSSHAG00000002423	IL1R1 (ENSSHAG00000005754)	ENSSHAG00000028997	ENSSHAG00000007642	ENSSHAG00000007987	IL18RAP (ENSSHAG00000001935)	SLC9A4 (ENSSHAG00000003225)	SLC9A2 (ENSSHAG00000006905)
Diprotodontia	ANCESTRAL SPECIES	43	ENSGT00940000154508.a.a	ENSGT00390000015511	ENSGT00390000003901	ENSGT00940000153232.a.b	ENSGT00940000159063	ENSGT00940000158457	ENSGT00520000055589.d	ENSGT00390000006550	ENSGT00390000014316.c.b.`b	ENSGT00390000015545	ENSGT00940000158194	ENSGT00940000158376	ENSGT00940000162234.a	ENSGT00940000161922.i.b	ENSGT00410000025556.a.a.a.b	ENSGT00940000153676.a ##22	ENSGT01030000234566.e.b.a.a	ENSGT00950000183045.C	ENSGT00940000153230.A	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000158368	ENSGT00940000154593.a.b	ENSGT00390000009873	ENSGT00940000158356	ENSGT00940000160772	ENSGT00390000009191
Diprotodontia_a	ANCESTRAL SPECIES	38	ENSGT00940000154508.a.a	ENSGT00390000015511	ENSGT00390000003901	ENSGT00940000153232.a.b.e	ENSGT00940000153232.a.b.f	ENSGT00940000159063	ENSGT00940000158457	ENSGT00520000055589.d	ENSGT00390000006550	ENSGT00390000014316.c.b.`b	ENSGT00390000015545	ENSGT00940000158194	ENSGT00940000158376	ENSGT00940000162234.a	ENSGT00410000025556.a.a.a.b	ENSGT00940000153676.a ##22	ENSGT01030000234566.e.b.a.a	ENSGT00950000183045.C	ENSGT00940000153230.A	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000158368	ENSGT00940000154593.a.b	ENSGT00390000009873	ENSGT00940000158356	ENSGT00940000160772	ENSGT00390000009191
koala	MODERN SPECIES	123	ACSL1 (ENSPCIG00000025030)	ENSPCIG00000025028	PRIMPOL (ENSPCIG00000025027)	ENSPCIG00000034000	ENSPCIG00000032808	IRF2 (ENSPCIG00000021142)	ENPP6 (ENSPCIG00000031713)	STOX2 (ENSPCIG00000010837)	TRAPPC11 (ENSPCIG00000010834)	ENSPCIG00000010836	RWDD4 (ENSPCIG00000010832)	ING2 (ENSPCIG00000010828)	CDKN2AIP (ENSPCIG00000010826)	ENSPCIG00000013384	WWC2 (ENSPCIG00000010902)	DCTD (ENSPCIG00000013744) ##22	ENSPCIG00000013700	ENSPCIG00000013679	ENSPCIG00000016947	ENSPCIG00000032523
Common wonbat	DUPLICATION
Common wonbat	MODERN SPECIES	1057	HELT (ENSVURG00010006821)	ACSL1 (ENSVURG00010006848)	ENSVURG00010006883	ENSVURG00010006898	IRF2 (ENSVURG00010006908)	ENPP6 (ENSVURG00010006917)	STOX2 (ENSVURG00010006945)	TRAPPC11 (ENSVURG00010006961)	RWDD4 (ENSVURG00010006994)	ENSVURG00010007020	CDKN2AIP (ENSVURG00010007029)	WWC2 (ENSVURG00010007055)	ENSVURG00010007081	ENSVURG00010007086	ENSVURG00010007087	DCTD (ENSVURG00010007106) ##22	TENM3 (ENSVURG00010007150)	ENSVURG00010007201	ENSVURG00010007209	ENSVURG00010007226	AGA (ENSVURG00010007244)	NEIL3 (ENSVURG00010007255)	VEGFC (ENSVURG00010007272)	SPCS3 (ENSVURG00010007285)	ASB5 (ENSVURG00010007296)	ENSVURG00010007314	WDR17 (ENSVURG00010007351)	GPM6A (ENSVURG00010008007)	ENSVURG00010008026	GLRA3 (ENSVURG00010008080)	HPGD (ENSVURG00010008239)
Common wonbat	MODERN SPECIES	636											BMP3 (ENSVURG00010022555)	PRKG2 (ENSVURG00010022522)	WDFY3 (ENSVURG00010022480)	CDS1 (ENSVURG00010022469)	NKX6-1 (ENSVURG00010022462)	ENSVURG00010022457 ##22	ENSVURG00010022456	GPAT3 (ENSVURG00010022446)	ENSVURG00010022440	HELQ (ENSVURG00010022432)	ARHGAP24 (ENSVURG00010022420)	MAPK10 (ENSVURG00010021558)	ENSVURG00010021483	PTPN13 (ENSVURG00010021373)	SLC10A6 (ENSVURG00010021352)	ENSVURG00010021343	AFF1 (ENSVURG00010021325)	KLHL8 (ENSVURG00010021319)	HSD17B13 (ENSVURG00010021316)	HSD17B11 (ENSVURG00010021308)	ENSVURG00010021305
Actinopterygii	ANCESTRAL SPECIES	641															ENSGT00410000025556.a.a.a.b	ENSGT00940000153676.a ##22	ENSGT01030000234566.e.b.a.a	ENSGT01030000234566.f
Neopterygii	ANCESTRAL SPECIES	508															ENSGT00410000025556.a.a.a.b	ENSGT00940000153676.a ##22	ENSGT01030000234566.e.b.a.a	ENSGT01030000234566.f
Spotted gar	MODERN SPECIES	670	slc25a4 (ENSLOCG00000013773)	ENSLOCG00000013771	helt (ENSLOCG00000013768)	acsl1b (ENSLOCG00000013758)	ENSLOCG00000013756	primpol (ENSLOCG00000013749)	casp3a (ENSLOCG00000013742)	irf2 (ENSLOCG00000013738)	enpp6 (ENSLOCG00000013730)	STOX2 (ENSLOCG00000013723)	ENSLOCG00000013715	trappc11 (ENSLOCG00000013704)	rwdd (ENSLOCG00000013699)	ENSLOCG00000013696	WWC2 (ENSLOCG00000013682)	dctd (ENSLOCG00000013678) ##22	TENM3 (ENSLOCG00000013649)	aga (ENSLOCG00000013645)	neil3 (ENSLOCG00000013638)	vegfc (ENSLOCG00000013634)	spcs3 (ENSLOCG00000013631)	ASB5 (ENSLOCG00000013627)	spata4 (ENSLOCG00000013625)	wdr17 (ENSLOCG00000013618)	gpm6aa (ENSLOCG00000013615)	glra3 (ENSLOCG00000013603)	hpgd (ENSLOCG00000013597)	cep44 (ENSLOCG00000013590)	fbxo8 (ENSLOCG00000013587)	hand2 (ENSLOCG00000013581)	hmgb2a (ENSLOCG00000013578)
Osteoglossocephalai	ANCESTRAL SPECIES	14															ENSGT00410000025556.a.a.a.b	ENSGT00940000153676.a ##22	ENSGT01030000234566.e.b.a.a	ENSGT01030000234566.f	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00940000165059.A	ENSGT00940000158602	ENSGT00390000006915.d.i	ENSGT01080000257376.a.b.a.a	ENSGT00390000006915.d.j.a	ENSGT00940000158368	ENSGT00940000154593.a.b	ENSGT00390000009873	ENSGT00940000158356	ENSGT00940000160772
Osteoglossiformes	ANCESTRAL SPECIES	231			ENSGT01090000260120.c	ENSGT00390000009529	ENSGT00940000155795.d	ENSGT00390000003680.a.a.a.d	ENSGT00940000164842	ENSGT00390000010980	ENSGT00950000182856.a.a.b.a	ENSGT00390000015511	ENSGT00940000159063.g.b	ENSGT00940000158457	ENSGT00520000055589.d.a.a	ENSGT00390000015545	ENSGT00940000158194	ENSGT00940000153676.a ##22	ENSGT01030000234566.e.b.a.a.d.a	ENSGT00950000183045.C	ENSGT00940000153230.A	ENSGT00940000165522.a	ENSGT00910000144159.B	ENSGT00390000006915.d.j.b	ENSGT00940000158368.j	ENSGT00940000160772.j	ENSGT00940000158105.j	ENSGT00940000155038.uc	ENSGT00390000000973.a.b.j
Asian bonytongue	MODERN SPECIES	18	ENSSFOG00015026520	ENSSFOG00015015958	ENSSFOG00015015991	ENSSFOG00015016020	ndufs2 (ENSSFOG00015016033)	KIRREL1 (ENSSFOG00015016073)	PIP4P1 (ENSSFOG00015026379)	zgc:77880 (ENSSFOG00015016117)	zgc:153146 (ENSSFOG00015016159)	snx25 (ENSSFOG00015016180)	ENSSFOG00015016228	irf2 (ENSSFOG00015016268)	enpp6 (ENSSFOG00015016299)	rwdd (ENSSFOG00015016340)	STOX2 (ENSSFOG00015016321)	dctd (ENSSFOG00015016372) ##22	TENM3 (ENSSFOG00015016398)	aga (ENSSFOG00015026832)	neil3 (ENSSFOG00015016495)	asb5a (ENSSFOG00015016519)	spata4 (ENSSFOG00015025074)	gpm6aa (ENSSFOG00015016573)	ENSSFOG00015016602	HAND2 (ENSSFOG00015025637)	GALNT7 (ENSSFOG00015016651)	GALNTL6 (ENSSFOG00015016704)	FAM193A (ENSSFOG00015016741)	ENSSFOG00015033033	CNGA1 (ENSSFOG00015016819)	NFXL1 (ENSSFOG00015016860)	CORIN (ENSSFOG00015016934)
P. kingsleyae	MODERN SPECIES	142	ENSPKIG00000007710	ENSPKIG00000007693	ENSPKIG00000007671	ndufs2 (ENSPKIG00000007619)	KIRREL1 (ENSPKIG00000007577)	PIP4P1 (ENSPKIG00000007543)	zgc:77880 (ENSPKIG00000007490)	snx25 (ENSPKIG00000007409)	ENSPKIG00000007373	irf2 (ENSPKIG00000007333)	enpp6 (ENSPKIG00000007305)	enpp6 (ENSPKIG00000007282)	STOX2 (ENSPKIG00000007258)	rwdd (ENSPKIG00000007232)	ING2 (ENSPKIG00000007217)	dctd (ENSPKIG00000007202) ##22	ENSPKIG00000007190	TENM3 (ENSPKIG00000006791)	aga (ENSPKIG00000006658)	neil3 (ENSPKIG00000006630)	ENSPKIG00000006621	asb5a (ENSPKIG00000006588)	spata4 (ENSPKIG00000006546)	gpm6aa (ENSPKIG00000006511)	HAND2 (ENSPKIG00000006490)	GALNT7 (ENSPKIG00000006430)	GALNTL6 (ENSPKIG00000006370)	ENSPKIG00000006345	mtus1a (ENSPKIG00000006318)	pdgfrl (ENSPKIG00000006299)	slc7a2 (ENSPKIG00000006243)
Clupeocephala	ANCESTRAL SPECIES	26															ENSGT00410000025556.a.a.a.b	ENSGT00940000153676.a ##22	ENSGT01030000234566.e.b.a.a.a.a	ENSGT01030000234566.e.b.a.a.b	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00940000165059.A	ENSGT00940000158602	ENSGT00390000006915.d.i	ENSGT01080000257376.a.b.a.a	ENSGT00390000006915.d.j.a	ENSGT00940000158368	ENSGT00940000154593.a.b	ENSGT00390000009873	ENSGT00940000158356	ENSGT00940000160772
Euteleosteomorpha	ANCESTRAL SPECIES	247															ENSGT00410000025556.a.a.a.b	ENSGT00940000153676.a ##22	ENSGT01030000234566.e.b.a.a.a.a	ENSGT01030000234566.e.b.a.a.b	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00940000166667	ENSGT00940000158602	ENSGT00390000006915.d.j.a	ENSGT00940000158368	ENSGT00940000154593.a.b	ENSGT00390000009873	ENSGT00940000158356	ENSGT00940000160772	ENSGT00390000009191	ENSGT00940000154466
Protacanthopterygii	ANCESTRAL SPECIES	41												ENSGT01090000260176	ENSGT01100000263491.a.b.a.a.a.b.b.b.a.a	ENSGT01100000263533.b.b.a.a.a.a.a.b	ENSGT00410000025556.a.a.a.b	ENSGT00940000153676.a ##22	ENSGT01030000234566.e.b.a.a.a.a	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000158602	ENSGT00390000006915.d.j.a	ENSGT00390000006915.d.i	ENSGT00940000158368	ENSGT00940000154593.a.b	ENSGT00390000009873	ENSGT00940000158356	ENSGT00940000160772	ENSGT00390000009191	ENSGT00940000154466	ENSGT00940000158105	ENSGT00940000155038
Northern pike	MODERN SPECIES	24	ENSELUG00000019547	b4galt1l (ENSELUG00000027513)	ENSELUG00000019439	ENSELUG00000030401	ENSELUG00000000827	ENSELUG00000019425	ENSELUG00000030937	b4galt1l (ENSELUG00000019368)	abca1a (ENSELUG00000019335)	ENSELUG00000019185	ENSELUG00000032305	ENSELUG00000019144	xpa (ENSELUG00000019135)	ENSELUG00000001458	WWC2 (ENSELUG00000019077)	dctd (ENSELUG00000018934) ##22	ENSELUG00000016425	TENM3 (ENSELUG00000018852)	vegfc (ENSELUG00000018700)	spcs3 (ENSELUG00000030400)	asb5b (ENSELUG00000018654)	wdr17 (ENSELUG00000018578)	GPM6A (ENSELUG00000018445)	ATP1A1 (ENSELUG00000018410)	ENSELUG00000018338	ENSELUG00000034594	ENSELUG00000031566	ENSELUG00000025867	ENSELUG00000031385	ENSELUG00000028834	ENSELUG00000033774
Salmoninae	DUPLICATION
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	460															ENSGT00410000025556.a.a.a.b.c.b.b	ENSGT00940000153676.a.w.a ##22	ENSGT01030000234566.e.b.a.a.a.a	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000165059.A.i.b.b	ENSGT00940000158602	ENSGT00390000006915.d.j.a	ENSGT00940000158368.f.b	ENSGT00390000006915.d.i	ENSGT00940000158368.e	ENSGT00940000154593.a.b.e	ENSGT00390000009873.d	ENSGT00390000009873.c.a	ENSGT00940000158356	ENSGT00940000160772	ENSGT00390000009191.a.a
Huchen	MODERN SPECIES	1146								ENSHHUG00000032353	ENSHHUG00000032351	ENSHHUG00000032349	ENSHHUG00000032348	ENSHHUG00000032346	ENSHHUG00000032341	saraf (ENSHHUG00000032332)	WWC2 (ENSHHUG00000032328)	dctd (ENSHHUG00000032260) ##22	ENSHHUG00000030339
Salmoninae_a	DUPLICATION
Salmoninae_a	ANCESTRAL SPECIES																	ENSGT00940000153676.a.w.a.a ##22
Oncorhynchus	ANCESTRAL SPECIES																	ENSGT00940000153676.a.w.a.a ##22
Oncorhynchus_a	ANCESTRAL SPECIES																	ENSGT00940000153676.a.w.a.a ##22
Coho salmon	MODERN SPECIES	27	ENSOKIG00005010845	ENSOKIG00005010817	ENSOKIG00005010806	ENSOKIG00005010802	ENSOKIG00005010795	ENSOKIG00005010792	ENSOKIG00005010789	ENSOKIG00005010787	ENSOKIG00005010767	ENSOKIG00005010748	ENSOKIG00005010738	ENSOKIG00005010731	saraf (ENSOKIG00005010717)	WWC2 (ENSOKIG00005010645)	ENSOKIG00005010634	dctd (ENSOKIG00005010629) ##22	TENM3 (ENSOKIG00005010263)	ENSOKIG00005010193	ENSOKIG00005010192	vegfc (ENSOKIG00005010178)	spcs3 (ENSOKIG00005010167)	asb5b (ENSOKIG00005010139)	wdr17 (ENSOKIG00005008293)	GPM6A (ENSOKIG00005008116)	ENSOKIG00005008099	ENSOKIG00005008095	glra3 (ENSOKIG00005007473)	hpgd (ENSOKIG00005007435)	cep44 (ENSOKIG00005007428)	fbxo8 (ENSOKIG00005007411)	hand2 (ENSOKIG00005007398)
Salmoninae_a	ANCESTRAL SPECIES	237															ENSGT00410000025556.a.a.a.b.c.b.b	ENSGT00940000153676.a.w.a.b ##22	ENSGT01030000234566.e.b.a.a.a.a.b	ENSGT00940000156167.b.c	ENSGT00390000009223.ob	ENSGT00940000165059.A.i.b.b
Oncorhynchus	ANCESTRAL SPECIES	92																ENSGT00940000153676.a.w.a.b ##22	ENSGT01030000234566.e.b.a.a.a.a.b	ENSGT00940000156167.b.c	ENSGT00390000009223.ob	ENSGT00940000165059.A.i.b.b.a	ENSGT00940000158602.o	ENSGT00390000006915.d.i	ENSGT00940000158368.e.b	ENSGT00940000154593.a.b.e.d	ENSGT00390000009873.c.b	ENSGT00940000158356.i.b	ENSGT00940000160772.d	ENSGT00390000009191.a.a.b	ENSGT00940000154466.ec	ENSGT00940000154466.dc.a	ENSGT00940000158105.p
Oncorhynchus_a	ANCESTRAL SPECIES	343													ENSGT01030000234576.D.a.b.b.f.a.a	ENSGT00390000013419.l.a	ENSGT00410000025556.a.a.a.b.c.a.a.a	ENSGT00940000153676.a.w.a.b ##22	ENSGT01030000234566.e.b.a.a.a.a.a.a
Chinook salmon	DUPLICATION
Chinook salmon	MODERN SPECIES	27	ENSOTSG00005018576	ENSOTSG00005018577	ENSOTSG00005018580	ENSOTSG00005018582	ENSOTSG00005018584	ENSOTSG00005018585	ENSOTSG00005018586	ENSOTSG00005018587	ENSOTSG00005018590	ENSOTSG00005018591	ENSOTSG00005018593	ENSOTSG00005018596	ENSOTSG00005018597	ENSOTSG00005018598	ENSOTSG00005018599	dctd (ENSOTSG00005018600) ##22	ENSOTSG00005018601	ENSOTSG00005018602	ENSOTSG00005018603	ENSOTSG00005018604	ENSOTSG00005018606	ENSOTSG00005018607	ENSOTSG00005018608	ENSOTSG00005018609	ENSOTSG00005018610	ENSOTSG00005018611	ENSOTSG00005018612	ENSOTSG00005018613	ENSOTSG00005018615	ENSOTSG00005018616	ENSOTSG00005018617
Chinook salmon	MODERN SPECIES	27	ENSOTSG00005018634	ENSOTSG00005018637	ENSOTSG00005018639	ENSOTSG00005018640	ENSOTSG00005018643	ENSOTSG00005018645	ENSOTSG00005018647	ENSOTSG00005018649	ENSOTSG00005018651	ENSOTSG00005018654	ENSOTSG00005018669	ENSOTSG00005018675	ENSOTSG00005006826	ENSOTSG00005006828	ENSOTSG00005006829	dctd (ENSOTSG00005006831) ##22	ENSOTSG00005006832	ENSOTSG00005006834	gpm6ab (ENSOTSG00005006835)	glra3 (ENSOTSG00005006844)	hpgd (ENSOTSG00005007795)	cep44 (ENSOTSG00005007796)	fbxo8 (ENSOTSG00005007800)	hand2 (ENSOTSG00005007802)	SCRG1 (ENSOTSG00005007804)	hmgb2a (ENSOTSG00005007805)	galnt7 (ENSOTSG00005007810)	galntl6 (ENSOTSG00005008288)	ENSOTSG00005008290	ENSOTSG00005008293	dnajb1b (ENSOTSG00005008296)
Coho salmon	MODERN SPECIES	3	ENSOKIG00005020021	ENSOKIG00005020034	ENSOKIG00005020057	ENSOKIG00005020098	ENSOKIG00005020159	ENSOKIG00005020167	ENSOKIG00005020190	ENSOKIG00005020209	ENSOKIG00005020213	ENSOKIG00005020217	ENSOKIG00005020223	ENSOKIG00005020235	ENSOKIG00005020241	ENSOKIG00005020253	WWC2 (ENSOKIG00005020298)	dctd (ENSOKIG00005020428) ##22	TENM3 (ENSOKIG00005020509)	vegfc (ENSOKIG00005021044)	spcs3 (ENSOKIG00005021064)	asb5b (ENSOKIG00005011907)	wdr17 (ENSOKIG00005011968)	GPM6A (ENSOKIG00005012161)	ENSOKIG00005012205	glra3 (ENSOKIG00005012250)	hpgd (ENSOKIG00005012957)	cep44 (ENSOKIG00005012964)	fbxo8 (ENSOKIG00005012974)	hand2 (ENSOKIG00005013007)	SCRG1 (ENSOKIG00005012997)	hmgb2a (ENSOKIG00005013022)	galnt7 (ENSOKIG00005013068)
Salmo	ANCESTRAL SPECIES	86												ENSGT01090000260176.b.a.a	ENSGT01100000263491.a.b.a.a.a.b.b.b.a.a	ENSGT01030000234576.D.a.b.b.f.b.a	ENSGT00410000025556.a.a.a.b.c.b.b	ENSGT00940000153676.a.w.a.b ##22	ENSGT01030000234566.e.b.a.a.a.a.b	ENSGT00940000156167.b.c	ENSGT00390000009223.ob	ENSGT00940000165059.A.i.b.b	ENSGT00940000158602.n	ENSGT00390000006915.d.j.a.f	ENSGT00940000158368.f.a	ENSGT00940000154593.a.b.e.a	ENSGT00390000009873.d	ENSGT00940000158356.h	ENSGT00940000160772.c	ENSGT00390000009191.b	ENSGT00390000009191.a.a	ENSGT00940000154466.dc.b	ENSGT00940000158105.q.a
Atlantic salmon	MODERN SPECIES	23	ENSSSAG00000070297	ENSSSAG00000085011	ENSSSAG00000103651	ENSSSAG00000093224	ENSSSAG00000084067	ENSSSAG00000090686	ENSSSAG00000085642	ENSSSAG00000098667	ENSSSAG00000101561	ENSSSAG00000104305	ENSSSAG00000070295	ENSSSAG00000086321	ENSSSAG00000063556	ENSSSAG00000085391	WWC2 (ENSSSAG00000070262)	DCTD (ENSSSAG00000070252) ##22	TENM3 (ENSSSAG00000056252)	ENSSSAG00000109209	vegfc (ENSSSAG00000055981)	SPCS3 (ENSSSAG00000055976)	asb5b (ENSSSAG00000055967)	wdr17 (ENSSSAG00000055196)	GPM6A (ENSSSAG00000054788)	glra3 (ENSSSAG00000054688)	PGDH (ENSSSAG00000054647)	ENSSSAG00000082929	ENSSSAG00000086498	cep44 (ENSSSAG00000054633)	fbxo8 (ENSSSAG00000090818)	hand2 (ENSSSAG00000087050)	SCRG1 (ENSSSAG00000108079)
River trout	MODERN SPECIES	33	ENSSTUG00000013934	ENSSTUG00000013929	ENSSTUG00000013909	ENSSTUG00000013901	ENSSTUG00000013891	ENSSTUG00000013880	ENSSTUG00000013868	ENSSTUG00000013866	ENSSTUG00000013863	ENSSTUG00000013854	ENSSTUG00000013849	ENSSTUG00000013837	ENSSTUG00000013835	ENSSTUG00000013830	WWC2 (ENSSTUG00000013773)	dctd (ENSSTUG00000013750) ##22	TENM3 (ENSSTUG00000012215)	ENSSTUG00000012149	ENSSTUG00000012137	vegfc (ENSSTUG00000012123)	spcs3 (ENSSTUG00000012094)	ENSSTUG00000012089	asb5b (ENSSTUG00000012082)	wdr17 (ENSSTUG00000010168)	GPM6A (ENSSTUG00000009919)	glra3 (ENSSTUG00000009347)	ENSSTUG00000009328	hpgd (ENSSTUG00000009308)	cep44 (ENSSTUG00000009293)	fbxo8 (ENSSTUG00000009240)	hand2 (ENSSTUG00000009220)
Salmoninae	ANCESTRAL SPECIES	1553															ENSGT00410000025556.a.a.a.b.c.a	ENSGT00940000153676.a.w.b ##22
Salmoninae_a	ANCESTRAL SPECIES	84	ENSGT00940000155484.b.c	ENSGT00950000182881.a.b.a.b.z.a	ENSGT00940000153662.A.h.b	ENSGT00990000203830.b	ENSGT00510000052596.b.a	ENSGT00510000052942.c.a	ENSGT00950000183012.A.b.a	ENSGT00940000158942.a.c	ENSGT00390000002721.d	ENSGT01030000234532.B.e.a.a.b.e	ENSGT00390000004237.q.a.b.b	ENSGT01100000264182	ENSGT00940000164807.E.a.a.a.a.a.b.a	ENSGT00390000013419	ENSGT00410000025556.a.a.a.b.c.a.a	ENSGT00940000153676.a.w.b ##22	ENSGT01030000234566.e.b.a.a.a.a.a	ENSGT00940000156167.b.d	ENSGT00390000009223.nb	ENSGT00940000165059.A.i.b.a	ENSGT00940000158602	ENSGT00390000006915.d.j.a	ENSGT00940000158368.f.b	ENSGT00390000006915.d.i	ENSGT00940000158368.e	ENSGT00940000154593.a.b.e	ENSGT00390000009873.c.a	ENSGT00940000158356	ENSGT00940000160772.c	ENSGT00390000009191.a.a	ENSGT00940000154466.ec
Oncorhynchus	ANCESTRAL SPECIES	6	ENSGT00390000017246.b	ENSGT00950000182938.b.b.b.a.b.a.e	ENSGT00940000158695.c	ENSGT00940000153246.a.a.b.c	ENSGT00940000155244.d.e.a.d.c	ENSGT00940000154658.b.i.b.c.b	ENSGT01100000263491.a.b.a.a.a.b.b.b.a.b.b.a.b.a.b.a.a	ENSGT01100000264182	ENSGT00940000164807.E.a.a.a.a.a.b.a	ENSGT01100000263505.b.b.a.a.a.a.b.b.b.b.b.a.b.b.a.b.a	ENSGT01040000240808	ENSGT00390000002721.d	ENSGT00390000013419	ENSGT00410000025556.a.a.a.b.c.a.a.a	ENSGT00410000025556.a.a.a.b.c.b.a.a	ENSGT00940000153676.a.w.b ##22	ENSGT01030000234566.e.b.a.a.a.a.a.b	ENSGT01030000234566.e.b.a.a.a.a.a.a	ENSGT00940000156167.b.d	ENSGT00390000009223.nb	ENSGT00940000165059.A.i.b.a	ENSGT00940000158602.p	ENSGT00390000006915.d.j.a	ENSGT00940000158368.e.a	ENSGT00940000154593.a.b.e.c	ENSGT00390000009873.c.a	ENSGT00940000158356.i.a	ENSGT00940000160772.c	ENSGT00390000009191.a.a.a	ENSGT00940000154466.dc.b.a	ENSGT00940000158105.o
Oncorhynchus_a	ANCESTRAL SPECIES	284											ENSGT01030000234576.D.a.b.b.f.a.b	ENSGT01040000240808	ENSGT00390000002721.d	ENSGT00390000013419.k	ENSGT00410000025556.a.a.a.b.c.b.a.a	ENSGT00940000153676.a.w.b ##22	ENSGT01030000234566.e.b.a.a.a.a.a.b
Chinook salmon	DUPLICATION
Chinook salmon	MODERN SPECIES	36	ENSOTSG00005016499	ENSOTSG00005016497	ENSOTSG00005016496	ENSOTSG00005016495	ENSOTSG00005016494	ENSOTSG00005016493	ENSOTSG00005016491	ENSOTSG00005016490	ENSOTSG00005016489	ENSOTSG00005016488	ENSOTSG00005016487	ENSOTSG00005016485	xpa (ENSOTSG00005016484)	ENSOTSG00005016481	ENSOTSG00005016479	dctd (ENSOTSG00005016451) ##22	ENSOTSG00005012698	ENSOTSG00005012694	ENSOTSG00005012693	ENSOTSG00005012692	ENSOTSG00005012690	ENSOTSG00005012688	mef2d (ENSOTSG00005012687)	BCAN (ENSOTSG00005012683)	ENSOTSG00005012682	thap7 (ENSOTSG00005012677)	zgc:64022 (ENSOTSG00005012675)	pex11b (ENSOTSG00005012674)	rit1 (ENSOTSG00005012672)	syt11a (ENSOTSG00005012671)	ENSOTSG00005012670
Chinook salmon	MODERN SPECIES	36	ENSOTSG00005045753	ENSOTSG00005045755	ENSOTSG00005045756	ENSOTSG00005045757	ENSOTSG00005045759	ENSOTSG00005045761	ENSOTSG00005045762	ENSOTSG00005045763	ENSOTSG00005045764	ENSOTSG00005045765	ENSOTSG00005045766	ENSOTSG00005045767	xpa (ENSOTSG00005045768)	ENSOTSG00005045769	ENSOTSG00005045770	dctd (ENSOTSG00005045771) ##22	ENSOTSG00005045773	gabpb2a (ENSOTSG00005045859)	mllt11 (ENSOTSG00005045860)	cdc42se1 (ENSOTSG00005045861)	ENSOTSG00005045862	PRUNE1 (ENSOTSG00005045863)	mindy1 (ENSOTSG00005045864)	PI4KB (ENSOTSG00005045865)	ENSOTSG00005045866	psmb4 (ENSOTSG00005045867)	pogza (ENSOTSG00005045870)	ENSOTSG00005045873	zgc:153441 (ENSOTSG00005045874)	vps45 (ENSOTSG00005045877)	plekho1a (ENSOTSG00005045972)
Rainbow trout	MODERN SPECIES	10	ENSOMYG00000055747	ENSOMYG00000052646	ENSOMYG00000005632	ENSOMYG00000005841	ENSOMYG00000070022	ENSOMYG00000005716	ENSOMYG00000005726	ENSOMYG00000061762	ENSOMYG00000005565	ENSOMYG00000005417	ENSOMYG00000060158	ENSOMYG00000005411	ENSOMYG00000020629	ENSOMYG00000020621	WWC2 (ENSOMYG00000020577)	dctd (ENSOMYG00000073078) ##22	TENM3 (ENSOMYG00000019844)	vegfc (ENSOMYG00000019522)	ENSOMYG00000065035	spcs3 (ENSOMYG00000019520)	asb5b (ENSOMYG00000019512)	wdr17 (ENSOMYG00000017900)	ENSOMYG00000067119	gpm6ab (ENSOMYG00000017609)	glra3 (ENSOMYG00000017336)	hpgd (ENSOMYG00000017310)	cep44 (ENSOMYG00000017279)	fbxo8 (ENSOMYG00000017247)	ENSOMYG00000048016	hand2 (ENSOMYG00000017232)	SCRG1 (ENSOMYG00000017225)
Salmo	ANCESTRAL SPECIES	116												ENSGT01030000234576.D.a.b.b.f.a	ENSGT00390000002721.d.d	ENSGT00390000013419	ENSGT00410000025556.a.a.a.b.c.a.a	ENSGT00940000153676.a.w.b ##22	ENSGT01030000234566.e.b.a.a.a.a.a	ENSGT00940000156167.b.d	ENSGT00390000009223.nb.a	ENSGT00940000165059.A.i.b.a	ENSGT00940000158602.m	ENSGT00390000006915.d.j.a.e	ENSGT00940000158368.f.b	ENSGT00940000154593.a.b.e.b	ENSGT00390000009873.c.a	ENSGT00940000158356.g	ENSGT00940000160772.d	ENSGT00390000009191.a.b	ENSGT00940000154466.dc.a	ENSGT00940000158105.q.b	ENSGT00940000155038.sc.b
River trout	MODERN SPECIES	2	ENSSTUG00000026570	ENSSTUG00000026587	ENSSTUG00000026637	ENSSTUG00000026639	ENSSTUG00000026642	ENSSTUG00000026647	ENSSTUG00000026656	ENSSTUG00000026732	ENSSTUG00000026738	ENSSTUG00000026744	ENSSTUG00000026748	ENSSTUG00000026754	xpa (ENSSTUG00000026759)	saraf (ENSSTUG00000026768)	WWC2 (ENSSTUG00000026786)	dctd (ENSSTUG00000026843) ##22	ENSSTUG00000026874	TENM3 (ENSSTUG00000026979)	vegfc (ENSSTUG00000031965)	spcs3 (ENSSTUG00000031980)	asb5b (ENSSTUG00000031996)	wdr17 (ENSSTUG00000032125)	GPM6A (ENSSTUG00000034275)	glra3 (ENSSTUG00000034335)	hpgd (ENSSTUG00000034473)	cep44 (ENSSTUG00000034489)	fbxo8 (ENSSTUG00000034503)	hand2 (ENSSTUG00000034578)	SCRG1 (ENSSTUG00000034605)	hmgb2a (ENSSTUG00000034628)	galnt7 (ENSSTUG00000034671)
Atlantic salmon	MODERN SPECIES	27	ENSSSAG00000094322	ENSSSAG00000101118	ENSSSAG00000104845	ENSSSAG00000106134	ENSSSAG00000115667	ENSSSAG00000117267	ZO20 (ENSSSAG00000063544)	ENSSSAG00000039802	ENSSSAG00000091541	ENSSSAG00000096711	ENSSSAG00000095452	ENSSSAG00000102489	ENSSSAG00000063566	saraf (ENSSSAG00000063573)	WWC2 (ENSSSAG00000063590)	ENSSSAG00000037804 ##22	ENSSSAG00000097282	TENM3 (ENSSSAG00000039668)	vegfc (ENSSSAG00000098022)	spcs3 (ENSSSAG00000063898)	asb5b (ENSSSAG00000063906)	wdr17 (ENSSSAG00000063973)	ENSSSAG00000062493	GPM6A (ENSSSAG00000068042)	glra3 (ENSSSAG00000068071)	PGDH (ENSSSAG00000069326)	cep44 (ENSSSAG00000069330)	fbxo8 (ENSSSAG00000115162)	hand2 (ENSSSAG00000106585)	SCRG1 (ENSSSAG00000054575)	hmgb2a (ENSSSAG00000109524)
Huchen	MODERN SPECIES	1656															WWC2 (ENSHHUG00000043427)	dctd (ENSHHUG00000043419) ##22	ENSHHUG00000041439
Salmoninae	ANCESTRAL SPECIES																	ENSGT00940000153676.a.x ##22
Salmoninae_a	ANCESTRAL SPECIES																	ENSGT00940000153676.a.x ##22
Oncorhynchus	ANCESTRAL SPECIES																	ENSGT00940000153676.a.x ##22
Rainbow trout	MODERN SPECIES	1	ENSOMYG00000058481	ENSOMYG00000003993	ENSOMYG00000069729	ENSOMYG00000059846	ENSOMYG00000066958	ENSOMYG00000003979	ENSOMYG00000075547	ENSOMYG00000004064	ENSOMYG00000005507	ENSOMYG00000004111	ENSOMYG00000004168	ENSOMYG00000004199	ENSOMYG00000051821	ENSOMYG00000004219	WWC2 (ENSOMYG00000004251)	ENSOMYG00000004381 ##22	TENM3 (ENSOMYG00000005360)	ENSOMYG00000055329	ENSOMYG00000051477	vegfc (ENSOMYG00000006060)	ENSOMYG00000061786	spcs3 (ENSOMYG00000006116)	asb5b (ENSOMYG00000006164)	ENSOMYG00000056256	wdr17 (ENSOMYG00000006843)	GPM6A (ENSOMYG00000007055)	glra3 (ENSOMYG00000007086)	ENSOMYG00000052045	hpgd (ENSOMYG00000007107)	cep44 (ENSOMYG00000007156)	fbxo8 (ENSOMYG00000007223)
Acanthomorphata	ANCESTRAL SPECIES	202						ENSGT00940000156344.a	ENSGT00940000156950.b	ENSGT00390000002918.a.a	ENSGT00940000158105	ENSGT00940000160772	ENSGT00940000158356	ENSGT00390000009873	ENSGT00940000154593.a.b	ENSGT00940000158368	ENSGT00390000013419	ENSGT00940000153676.a ##22	ENSGT01030000234566.e.b.a.a.a.a	ENSGT01030000234566.e.b.a.a.b	ENSGT00940000158602	ENSGT00940000166667	ENSGT00940000156167.b	ENSGT00390000004697	ENSGT00940000165823.d	ENSGT00390000013973.A.a.c.b.a	ENSGT00390000008711.h	ENSGT00940000157807.g.b
Euacanthomorphacea	ANCESTRAL SPECIES	97			ENSGT00940000156344.a	ENSGT00940000156950.b	ENSGT00390000002918.a.a	ENSGT00390000009223	ENSGT00940000159851	ENSGT00940000165522.b	ENSGT00940000158105	ENSGT00390000013419	ENSGT00940000160772	ENSGT00940000158356	ENSGT00390000009873	ENSGT00940000154593.a.b	ENSGT00940000158368	ENSGT00940000153676.a ##22	ENSGT01030000234566.e.b.a.a.a.a	ENSGT01030000234566.e.b.a.a.b	ENSGT00940000158602	ENSGT00940000166667	ENSGT00940000156167.b	ENSGT00390000004697	ENSGT00940000168028	ENSGT00940000165823.d	ENSGT00390000013973.A.a.c.b.a	ENSGT00390000008711.h	ENSGT00940000157807.g.b
Pinecone sodierfish	DUPLICATION
Pinecone sodierfish	MODERN SPECIES		ENSMMDG00005000927	GPM6A (ENSMMDG00005000924)	ENSMMDG00005000922	glrba (ENSMMDG00005000921)	ENSMMDG00005000919	ENSMMDG00005000918	GRIA2 (ENSMMDG00005000901)	pmm2 (ENSMMDG00005000890)	glra3 (ENSMMDG00005000886)	hpgd (ENSMMDG00005000883)	ENSMMDG00005000882	fbxo8 (ENSMMDG00005000879)	hand2 (ENSMMDG00005000878)	hmgb2a (ENSMMDG00005000877)	wdr17 (ENSMMDG00005000651)	dctd (ENSMMDG00005000595) ##22	TENM3 (ENSMMDG00005000508)	vegfc (ENSMMDG00005000467)	ENSMMDG00005000465	ENSMMDG00005000462	ENSMMDG00005000457	ENSMMDG00005000455	ENSMMDG00005000450	ENSMMDG00005000428	ENSMMDG00005000407	ENSMMDG00005000389	ENSMMDG00005000374	ENSMMDG00005000357	zdhhc5a (ENSMMDG00005000340)	tmx2b (ENSMMDG00005000324)	slc43a1b (ENSMMDG00005000228)
Pinecone sodierfish	DUPLICATION
Pinecone sodierfish	DUPLICATION
Pinecone sodierfish	DUPLICATION
Pinecone sodierfish	DUPLICATION
Pinecone sodierfish	MODERN SPECIES	23	ENSMMDG00005008469	FUT7 (ENSMMDG00005008466)	ENSMMDG00005008463	niban2b (ENSMMDG00005005367)	stxbp1b (ENSMMDG00005005283)	WHRN (ENSMMDG00005005278)	noxa1 (ENSMMDG00005005271)	dpp7 (ENSMMDG00005004766)	man1b1b (ENSMMDG00005004610)	cacna1ba (ENSMMDG00005004588)	ehmt1a (ENSMMDG00005004202)	arrdc1a (ENSMMDG00005004160)	ENSMMDG00005010871	nelfb (ENSMMDG00005010864)	entpd2a.1 (ENSMMDG00005010860)	dctd (ENSMMDG00005010857) ##22	dctd (ENSMMDG00005010853) ##22	dctd (ENSMMDG00005010850) ##22	dctd (ENSMMDG00005010849) ##22	dctd (ENSMMDG00005010781) ##22	ENSMMDG00005010774	arid3c (ENSMMDG00005010770)	EEF2 (ENSMMDG00005010610)	pias2 (ENSMMDG00005010598)	ube2l3b (ENSMMDG00005010575)	ydjc (ENSMMDG00005010572)	zgc:86811 (ENSMMDG00005010564)	rad17 (ENSMMDG00005010556)	ENSMMDG00005010554	isl1a (ENSMMDG00005010552)	si:dkey-3h3.3 (ENSMMDG00005010551)
Pinecone sodierfish	MODERN SPECIES	23	ENSMMDG00005008463	niban2b (ENSMMDG00005005367)	stxbp1b (ENSMMDG00005005283)	WHRN (ENSMMDG00005005278)	noxa1 (ENSMMDG00005005271)	dpp7 (ENSMMDG00005004766)	man1b1b (ENSMMDG00005004610)	cacna1ba (ENSMMDG00005004588)	ehmt1a (ENSMMDG00005004202)	arrdc1a (ENSMMDG00005004160)	ENSMMDG00005010871	nelfb (ENSMMDG00005010864)	entpd2a.1 (ENSMMDG00005010860)	dctd (ENSMMDG00005010857) ##22	dctd (ENSMMDG00005010853) ##22	dctd (ENSMMDG00005010850) ##22	dctd (ENSMMDG00005010849) ##22	dctd (ENSMMDG00005010781) ##22	ENSMMDG00005010774	arid3c (ENSMMDG00005010770)	EEF2 (ENSMMDG00005010610)	pias2 (ENSMMDG00005010598)	ube2l3b (ENSMMDG00005010575)	ydjc (ENSMMDG00005010572)	zgc:86811 (ENSMMDG00005010564)	rad17 (ENSMMDG00005010556)	ENSMMDG00005010554	isl1a (ENSMMDG00005010552)	si:dkey-3h3.3 (ENSMMDG00005010551)	parp8 (ENSMMDG00005010420)	ENSMMDG00005010406
Pinecone sodierfish	MODERN SPECIES	23	ENSMMDG00005010162	zfr (ENSMMDG00005010185)	ENSMMDG00005010406	parp8 (ENSMMDG00005010420)	si:dkey-3h3.3 (ENSMMDG00005010551)	isl1a (ENSMMDG00005010552)	ENSMMDG00005010554	rad17 (ENSMMDG00005010556)	zgc:86811 (ENSMMDG00005010564)	ydjc (ENSMMDG00005010572)	ube2l3b (ENSMMDG00005010575)	pias2 (ENSMMDG00005010598)	EEF2 (ENSMMDG00005010610)	arid3c (ENSMMDG00005010770)	ENSMMDG00005010774	dctd (ENSMMDG00005010781) ##22	dctd (ENSMMDG00005010849) ##22	dctd (ENSMMDG00005010850) ##22	dctd (ENSMMDG00005010853) ##22	dctd (ENSMMDG00005010857) ##22	entpd2a.1 (ENSMMDG00005010860)	nelfb (ENSMMDG00005010864)	ENSMMDG00005010871	arrdc1a (ENSMMDG00005004160)	ehmt1a (ENSMMDG00005004202)	cacna1ba (ENSMMDG00005004588)	man1b1b (ENSMMDG00005004610)	dpp7 (ENSMMDG00005004766)	noxa1 (ENSMMDG00005005271)	WHRN (ENSMMDG00005005278)	stxbp1b (ENSMMDG00005005283)
Pinecone sodierfish	MODERN SPECIES	23	FUT7 (ENSMMDG00005008466)	ENSMMDG00005008463	niban2b (ENSMMDG00005005367)	stxbp1b (ENSMMDG00005005283)	WHRN (ENSMMDG00005005278)	noxa1 (ENSMMDG00005005271)	dpp7 (ENSMMDG00005004766)	man1b1b (ENSMMDG00005004610)	cacna1ba (ENSMMDG00005004588)	ehmt1a (ENSMMDG00005004202)	arrdc1a (ENSMMDG00005004160)	ENSMMDG00005010871	nelfb (ENSMMDG00005010864)	entpd2a.1 (ENSMMDG00005010860)	dctd (ENSMMDG00005010857) ##22	dctd (ENSMMDG00005010853) ##22	dctd (ENSMMDG00005010850) ##22	dctd (ENSMMDG00005010849) ##22	dctd (ENSMMDG00005010781) ##22	ENSMMDG00005010774	arid3c (ENSMMDG00005010770)	EEF2 (ENSMMDG00005010610)	pias2 (ENSMMDG00005010598)	ube2l3b (ENSMMDG00005010575)	ydjc (ENSMMDG00005010572)	zgc:86811 (ENSMMDG00005010564)	rad17 (ENSMMDG00005010556)	ENSMMDG00005010554	isl1a (ENSMMDG00005010552)	si:dkey-3h3.3 (ENSMMDG00005010551)	parp8 (ENSMMDG00005010420)
Pinecone sodierfish	MODERN SPECIES	23	zfr (ENSMMDG00005010185)	ENSMMDG00005010406	parp8 (ENSMMDG00005010420)	si:dkey-3h3.3 (ENSMMDG00005010551)	isl1a (ENSMMDG00005010552)	ENSMMDG00005010554	rad17 (ENSMMDG00005010556)	zgc:86811 (ENSMMDG00005010564)	ydjc (ENSMMDG00005010572)	ube2l3b (ENSMMDG00005010575)	pias2 (ENSMMDG00005010598)	EEF2 (ENSMMDG00005010610)	arid3c (ENSMMDG00005010770)	ENSMMDG00005010774	dctd (ENSMMDG00005010781) ##22	dctd (ENSMMDG00005010849) ##22	dctd (ENSMMDG00005010850) ##22	dctd (ENSMMDG00005010853) ##22	dctd (ENSMMDG00005010857) ##22	entpd2a.1 (ENSMMDG00005010860)	nelfb (ENSMMDG00005010864)	ENSMMDG00005010871	arrdc1a (ENSMMDG00005004160)	ehmt1a (ENSMMDG00005004202)	cacna1ba (ENSMMDG00005004588)	man1b1b (ENSMMDG00005004610)	dpp7 (ENSMMDG00005004766)	noxa1 (ENSMMDG00005005271)	WHRN (ENSMMDG00005005278)	stxbp1b (ENSMMDG00005005283)	niban2b (ENSMMDG00005005367)
Percomorphaceae	ANCESTRAL SPECIES	75								ENSGT00390000009223	ENSGT00940000159851	ENSGT00940000165522.b	ENSGT00940000158105	ENSGT00390000013419	ENSGT00940000160772	ENSGT00940000158356	ENSGT00390000009873	ENSGT00940000153676.a ##22	ENSGT01030000234566.e.b.a.a.a.a	ENSGT00940000156167.b	ENSGT00390000004697	ENSGT00940000168028	ENSGT00940000165823.d	ENSGT00390000013973.A.a.c.b.a	ENSGT00390000008711.h	ENSGT00940000157807.g.b	ENSGT01020000230351.B.j.a	ENSGT00390000005096	ENSGT00940000165861	ENSGT00940000153576.c.a.a.b	ENSGT00940000156001.c	ENSGT00390000003751.a	ENSGT00990000203830
Tiger tail seahorse	MODERN SPECIES	282	ENSHCOG00000001913	patl1 (ENSHCOG00000001898)	ENSHCOG00000001869	ENSHCOG00000001854	ENSHCOG00000001844	mtmr7b (ENSHCOG00000001833)	pmm2 (ENSHCOG00000001822)	hmgb2a (ENSHCOG00000001815)	wdr17 (ENSHCOG00000001805)	GLRA3 (ENSHCOG00000001778)	ENSHCOG00000001764	GPM6A (ENSHCOG00000001758)	hand2 (ENSHCOG00000001752)	fbxo8 (ENSHCOG00000001746)	ENSHCOG00000001738	dctd (ENSHCOG00000001730) ##22	ENSHCOG00000001711	ENSHCOG00000001689	ENSHCOG00000001683	ENSHCOG00000001675	vegfc (ENSHCOG00000001658)	stx3a (ENSHCOG00000001649)	spcs3 (ENSHCOG00000001636)	kdm2aa (ENSHCOG00000001626)	galnt7 (ENSHCOG00000001612)	ENSHCOG00000001602	vps37c (ENSHCOG00000001594)	ddt (ENSHCOG00000001586)	ENSHCOG00000001581	ENSHCOG00000001576	ENSHCOG00000001563
Percomorphaceae_B	ANCESTRAL SPECIES		ENSGT00950000183012.A.b	ENSGT00610000087490	ENSGT00510000052942	ENSGT00510000052596.b	ENSGT00990000203830	ENSGT01030000234627.a.b.a.a.b.a	ENSGT00940000155484.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00940000165522.b	ENSGT00940000158105	ENSGT00390000013419	ENSGT00940000160772	ENSGT00940000158356	ENSGT00390000009873	ENSGT00940000153676.a ##22	ENSGT01030000234566.e.b.a.a.a.a	ENSGT00940000156167.b	ENSGT00390000004697	ENSGT00940000168028	ENSGT00940000165127.a	ENSGT01020000230338.a.b.b.a.a.b.a.a.a	ENSGT00940000153322.B.c	ENSGT00940000165823.d	ENSGT00390000013973.A.a.c.b.a	ENSGT00390000008711.h	ENSGT01100000263483.E.b.b	ENSGT00940000157807.g.b	ENSGT00390000003751.a	ENSGT00940000156001.c	ENSGT00940000153576.c.a.a.b
Percomorphaceae_C	ANCESTRAL SPECIES	25	ENSGT00990000203830	ENSGT01030000234627.a.b.a.a.b.a	ENSGT00940000155484.b	ENSGT00390000009223	ENSGT00940000165522.b	ENSGT00940000158105	ENSGT00390000013419	ENSGT00390000011272	ENSGT00940000174164	ENSGT00390000003049.b.a	ENSGT00940000156950.b	ENSGT00940000156344.a	ENSGT00940000160772	ENSGT00940000158356	ENSGT00390000009873	ENSGT00940000153676.a ##22	ENSGT01030000234566.e.b.a.a.a.a	ENSGT00940000156167.b	ENSGT00390000004697	ENSGT00940000153322.B.c	ENSGT00940000165823.d	ENSGT01020000230338.a.b.b.a.a.b.a.a.a	ENSGT00940000168028	ENSGT00940000165127.a	ENSGT00390000013973.A.a.c.b.a	ENSGT00390000008711.h	ENSGT01100000263483.E.b.b	ENSGT00940000157807.g.b	ENSGT00390000003751.a	ENSGT00940000156001.c	ENSGT00940000153576.c.a.a.b
Percomorphaceae_D	ANCESTRAL SPECIES		ENSGT00940000158602	ENSGT00940000166667	ENSGT00940000154593.a.b	ENSGT00940000158368	ENSGT00940000155980.B	ENSGT00390000006915.d.j.a	ENSGT00940000156950.b	ENSGT00940000156344.a	ENSGT00940000163205.d	ENSGT00940000166931	ENSGT00940000161345	ENSGT01100000263491.a.b.a.a.a.b.a	ENSGT00940000160772	ENSGT00940000158356	ENSGT00390000009873	ENSGT00940000153676.a ##22	ENSGT01030000234566.e.b.a.a.a.a	ENSGT00940000156167.b	ENSGT00390000004697	ENSGT00940000153322.B.c	ENSGT00940000165823.d	ENSGT01020000230338.a.b.b.a.a.b.a.a.a	ENSGT00940000168028	ENSGT00940000165127.a	ENSGT00390000013973.A.a.c.b.a	ENSGT00390000008711.h	ENSGT00940000157807.g.b	ENSGT00390000003751.a	ENSGT00940000156001.c	ENSGT00940000153576.c.a.a.b	ENSGT00940000165861
Anabantaria	ANCESTRAL SPECIES	48													ENSGT00940000160772	ENSGT00940000158356	ENSGT00390000009873	ENSGT00940000153676.a ##22	ENSGT01030000234566.e.b.a.a.a.a	ENSGT00940000156167.b	ENSGT00390000004697	ENSGT00940000168028	ENSGT00940000165127.a	ENSGT00390000013973.A.a.c.b.a	ENSGT00390000008711.h	ENSGT00940000157807.g.b	ENSGT00390000003751.a	ENSGT00940000156001.c	ENSGT00940000153576.c.a.a.b	ENSGT00940000165861	ENSGT00390000005096
Zig-zag eel	MODERN SPECIES		ENSMAMG00000003950	ENSMAMG00000003905	ENSMAMG00000003860	ENSMAMG00000003832	ENSMAMG00000003816	wdr17 (ENSMAMG00000003713)	hpgd (ENSMAMG00000026813)	glra3 (ENSMAMG00000003626)	ENSMAMG00000027721	ENSMAMG00000026834	ENSMAMG00000003580	ENSMAMG00000028518	hand2 (ENSMAMG00000003557)	ENSMAMG00000026096	cep44 (ENSMAMG00000003510)	ENSMAMG00000003495 ##22	ENSMAMG00000003364	ENSMAMG00000003330	ENSMAMG00000003298	ENSMAMG00000003269	ENSMAMG00000003247	ENSMAMG00000003226	ENSMAMG00000003204	ENSMAMG00000003194	pold4 (ENSMAMG00000003177)	ENSMAMG00000003057	slc43a1b (ENSMAMG00000003012)	ENSMAMG00000002998	ENSMAMG00000002950	ENSMAMG00000002930	ENSMAMG00000002866
Anabantoidei	ANCESTRAL SPECIES														ENSGT00940000160772	ENSGT00940000158356	ENSGT00390000009873	ENSGT00940000153676.a ##22	ENSGT01030000234566.e.b.a.a.a.a	ENSGT00940000156167.b	ENSGT00390000004697	ENSGT00940000168028	ENSGT00940000165127.a	ENSGT00390000008711.h	ENSGT00940000157807.g.b	ENSGT00390000003751.a	ENSGT00940000156001.c	ENSGT00940000153576.c.a.a.b	ENSGT00940000165861	ENSGT00390000005096	ENSGT01020000230351.B.j.a	ENSGT01100000263495.A.a.a	ENSGT00390000003049.b.a
Climbing perch	MODERN SPECIES		ENSATEG00000002726	ENSATEG00000002853	ENSATEG00000002857	ENSATEG00000029716	ENSATEG00000002868	ENSATEG00000002880	ENSATEG00000002928	ENSATEG00000029485	ENSATEG00000002966	ENSATEG00000002976	ENSATEG00000003079	ENSATEG00000003140	hand2 (ENSATEG00000003171)	ENSATEG00000003189	cep44 (ENSATEG00000003246)	ENSATEG00000025497 ##22	ENSATEG00000003278	ENSATEG00000003508	ENSATEG00000003514	ENSATEG00000026424	ENSATEG00000003550	ENSATEG00000003583	ENSATEG00000003607	ENSATEG00000003616	ENSATEG00000003675	slc43a1b (ENSATEG00000003687)	ENSATEG00000003700	pold4 (ENSATEG00000026596)	p2rx3b (ENSATEG00000003860)
Siamese fighting fish	MODERN SPECIES		ENDOV (ENSBSLG00000016186)	SEC14L1 (ENSBSLG00000016215)	ENSBSLG00000016610	trim25 (ENSBSLG00000016658)	ENSBSLG00000016713	dgke (ENSBSLG00000016750)	si:dkey-31g6.6 (ENSBSLG00000016935)	cbx8b (ENSBSLG00000017001)	CBX4 (ENSBSLG00000017018)	ENSBSLG00000017037	TEX2 (ENSBSLG00000017156)	ENSBSLG00000017195	prf1.2 (ENSBSLG00000017225)	AXIN2 (ENSBSLG00000017284)	ENSBSLG00000017312	dctd (ENSBSLG00000017363) ##22	TENM3 (ENSBSLG00000018093)	ENSBSLG00000023318	ENSBSLG00000023348	ENSBSLG00000023472	ENSBSLG00000023480	ENSBSLG00000023488 ##25	ENSBSLG00000023530	ENSBSLG00000023543	vegfc (ENSBSLG00000023549)	ENSBSLG00000023584	vegfc (ENSBSLG00000023591)	ENSBSLG00000000125	ENSBSLG00000000158	ENSBSLG00000000194	RPE65 (ENSBSLG00000000251)
Carangaria	ANCESTRAL SPECIES		ENSGT00950000183026.A.a.a.b	ENSGT00940000155777.b	ENSGT00390000002918.a.a	ENSGT00940000154466	ENSGT00940000158602	ENSGT00940000154593.a.b	ENSGT00940000158368	ENSGT00940000155980.B	ENSGT00390000006915.d.j.a	ENSGT00940000156950.b	ENSGT00940000156344.a	ENSGT00940000163205.d	ENSGT00940000160772	ENSGT00940000158356	ENSGT00390000009873	ENSGT00940000153676.a ##22	ENSGT01030000234566.e.b.a.a.a.a	ENSGT00940000156167.b	ENSGT00390000004697	ENSGT00940000153322.B.c	ENSGT00940000165823.d	ENSGT01020000230338.a.b.b.a.a.b.a.a.a	ENSGT00940000168028	ENSGT00940000165127.a	ENSGT00390000008711.h	ENSGT00940000157807.g.b	ENSGT00390000003751.a	ENSGT00940000156001.c	ENSGT00940000153576.c.a.a.b	ENSGT00940000165861	ENSGT00390000005096
Pleuronectoidei	ANCESTRAL SPECIES	76													ENSGT00940000160772	ENSGT00940000158356	ENSGT00390000009873	ENSGT00940000153676.a ##22	ENSGT01030000234566.e.b.a.a.a.a	ENSGT00940000156167.b	ENSGT00390000004697	ENSGT00940000153322.B.c	ENSGT00940000168028	ENSGT00940000165823.d	ENSGT00390000008711.h	ENSGT00940000157807.g.b	ENSGT00390000003751.a	ENSGT00940000156001.c	ENSGT00940000153576.c.a.a.b	ENSGT00940000165861	ENSGT00390000005096	ENSGT01020000230351.B.j.a	ENSGT01100000263495.A.a.a
Turbot	MODERN SPECIES	20	ENSSMAG00000014947	ENSSMAG00000014849	ENSSMAG00000013941	ENSSMAG00000013922	ENSSMAG00000013910	ENSSMAG00000024065	ENSSMAG00000013663	ENSSMAG00000013607	ENSSMAG00000032062	ENSSMAG00000014858	ENSSMAG00000013547	ENSSMAG00000013443	hand2 (ENSSMAG00000022866)	ENSSMAG00000013399	ENSSMAG00000013386	ENSSMAG00000013371 ##22	ENSSMAG00000012739	ENSSMAG00000037754	ENSSMAG00000012638	ENSSMAG00000032933	ENSSMAG00000012602	ENSSMAG00000034692	wdr17 (ENSSMAG00000012503)	ENSSMAG00000012492	ENSSMAG00000012484	ENSSMAG00000034788	ENSSMAG00000012277	ENSSMAG00000012252	ENSSMAG00000012233	ENSSMAG00000012181	ENSSMAG00000037831
Tongue sole	MODERN SPECIES	19	ugp2a (ENSCSEG00000009922)	MDH1 (ENSCSEG00000009948)	commd1 (ENSCSEG00000009966)	vps54 (ENSCSEG00000010003)	ENSCSEG00000010083	ENSCSEG00000010124	ifngr1 (ENSCSEG00000010604)	ltv1 (ENSCSEG00000010617)	ENSCSEG00000010630	capn9 (ENSCSEG00000010637)	taf5l (ENSCSEG00000010683)	nup133 (ENSCSEG00000010705)	ENSCSEG00000010795	ACTA1 (ENSCSEG00000010802)	CCSAP (ENSCSEG00000010817)	dctd (ENSCSEG00000010821) ##22	ENSCSEG00000010831	TENM3 (ENSCSEG00000010849)	vegfc (ENSCSEG00000010904)	ENSCSEG00000010914	ENSCSEG00000010923	ENSCSEG00000010935	cabp2a (ENSCSEG00000010944)	PTGDR2 (ENSCSEG00000010959)	ENSCSEG00000010963	ENSCSEG00000010974	ENSCSEG00000010979	ENSCSEG00000010986	pcdh18a (ENSCSEG00000010994)	pcdh10a (ENSCSEG00000011010)	ENSCSEG00000011028
Carangaria_A	ANCESTRAL SPECIES	62	ENSGT00940000163551.i.b	ENSGT00950000183026.A.a.a.b	ENSGT00940000155777.b	ENSGT00390000002918.a.a	ENSGT00940000154466	ENSGT00940000158602	ENSGT00940000154593.a.b	ENSGT00940000158368	ENSGT00940000155980.B	ENSGT00390000006915.d.j.a	ENSGT00940000156950.b	ENSGT00940000156344.a	ENSGT00940000160772	ENSGT00940000158356	ENSGT00390000009873	ENSGT00940000153676.a ##22	ENSGT01030000234566.e.b.a.a.a.a	ENSGT00940000156167.b	ENSGT00390000004697	ENSGT01020000230338.a.b.b.a.a.b.a.a.a	ENSGT00940000168028	ENSGT00940000165127.a	ENSGT00390000008711.h	ENSGT01100000263483.E.b.b.j	ENSGT00940000157807.g.b	ENSGT00390000003751.a	ENSGT00940000156001.c	ENSGT00940000153576.c.a.a.b	ENSGT00940000165861	ENSGT00390000005096	ENSGT01020000230351.B.j.a
Seriola	ANCESTRAL SPECIES	11	ENSGT00940000155777.b	ENSGT00390000002918.a.a	ENSGT00940000154466	ENSGT00940000158602	ENSGT00940000154593.a.b	ENSGT00940000158368	ENSGT00940000155980.B	ENSGT00390000006915.d.j.a	ENSGT00940000156950.b	ENSGT00940000156344.a	ENSGT00980000200302	ENSGT00940000157122.b.b	ENSGT00940000160772	ENSGT00940000158356	ENSGT00390000009873	ENSGT00940000153676.a ##22	ENSGT01030000234566.e.b.a.a.a.a	ENSGT00990000203726	ENSGT00940000156167.b	ENSGT00390000004697	ENSGT01020000230338.a.b.b.a.a.b.a.a.a	ENSGT00940000168028	ENSGT00940000165127.a	ENSGT00390000008711.h	ENSGT00940000157807.g.b	ENSGT00390000003751.a	ENSGT00940000156001.c	ENSGT00940000153576.c.a.a.b	ENSGT00940000165861	ENSGT00390000005096	ENSGT01020000230351.B.j.a
Greater amberjack	DUPLICATION
Greater amberjack	MODERN SPECIES	93						glra3 (ENSSDUG00000004967)	ENSSDUG00000005260	GPM6A (ENSSDUG00000005279)	gria2a (ENSSDUG00000005301)	glrba (ENSSDUG00000005332)	ENSSDUG00000005355	ENSSDUG00000005378	hand2 (ENSSDUG00000005437)	fbxo8 (ENSSDUG00000005461)	cep44 (ENSSDUG00000005496)	dctd (ENSSDUG00000005527) ##22	TENM3 (ENSSDUG00000005581)	ENSSDUG00000005910	ENSSDUG00000005924	ENSSDUG00000005946	vegfc (ENSSDUG00000005963)	ENSSDUG00000005987	ENSSDUG00000006003	ENSSDUG00000006043	ENSSDUG00000006084	ADISSP (ENSSDUG00000006122)	ENSSDUG00000006145	tmx2b (ENSSDUG00000006174)	zdhhc5a (ENSSDUG00000006208)	slc43a1b (ENSSDUG00000006234)	ENSSDUG00000006297
Greater amberjack	MODERN SPECIES	20								ENSSDUG00000005654	hmgb2a (ENSSDUG00000005632)	pmm2 (ENSSDUG00000005606)	mtmr7b (ENSSDUG00000005550)	ENSSDUG00000005531	ENSSDUG00000005523	ENSSDUG00000005488	ENSSDUG00000005449	dctd (ENSSDUG00000005434) ##22	patl1 (ENSSDUG00000005362)	RPS6KB2 (ENSSDUG00000005315)	ENSSDUG00000005305	ENSSDUG00000005296	ENSSDUG00000005281	ENSSDUG00000005271	ENSSDUG00000005227	ENSSDUG00000005183	neurl1aa (ENSSDUG00000005144)	SH3PXD2A (ENSSDUG00000005118)	stn1 (ENSSDUG00000005081)	slkb (ENSSDUG00000005052)	SMIM26 (ENSSDUG00000005036)	dtd1 (ENSSDUG00000005018)	SLC24A3 (ENSSDUG00000004963)
Yellowtail amberjack	MODERN SPECIES	3281											ENSSLDG00000019526	ENSSLDG00000019546	hand2 (ENSSLDG00000019601)	fbxo8 (ENSSLDG00000019619)	cep44 (ENSSLDG00000019636)	dctd (ENSSLDG00000019653) ##22	ENSSLDG00000019690	ENSSLDG00000019705	ENSSLDG00000019723	ENSSLDG00000019742	vegfc (ENSSLDG00000019755)	ENSSLDG00000019761	ENSSLDG00000019775	ENSSLDG00000019793	ENSSLDG00000019870	ADISSP (ENSSLDG00000019910)	TESK1 (ENSSLDG00000019934)	ENSSLDG00000019956	tmx2b (ENSSLDG00000019982)	zdhhc5a (ENSSLDG00000020012)	slc43a1b (ENSSLDG00000020034)
Barramundi perch	MODERN SPECIES	32	ENSLCAG00010021947	stx3a (ENSLCAG00010021943)	kdm2aa (ENSLCAG00010021893)	spcs3 (ENSLCAG00010021877)	ENSLCAG00010021872	galnt7 (ENSLCAG00010021795)	saraf (ENSLCAG00010021771)	TMEM187 (ENSLCAG00010021768)	ndufs8a (ENSLCAG00010021759)	ENSLCAG00010021757	ENSLCAG00010021755	p2rx3b (ENSLCAG00010021750)	hand2 (ENSLCAG00010021747)	fbxo8 (ENSLCAG00010021744)	ENSLCAG00010021739	dctd (ENSLCAG00010021737) ##22
Eupercaria	ANCESTRAL SPECIES	39											ENSGT00940000156950.b	ENSGT00940000156344.a	ENSGT00940000160772	ENSGT00940000158356	ENSGT00390000009873	ENSGT00940000153676.a ##22	ENSGT01030000234566.e.b.a.a.a.a	ENSGT00940000156167.b	ENSGT00390000004697	ENSGT01020000230338.a.b.b.a.a.b.a.a.a	ENSGT00940000168028	ENSGT00940000165127.a	ENSGT00390000013973.A.a.c.b.a	ENSGT00390000008711.h	ENSGT01100000263483.E.b.b	ENSGT00940000157807.g.b	ENSGT00390000003751.a	ENSGT00940000156001.c	ENSGT00940000153576.c.a.a.b	ENSGT00940000165861	ENSGT00390000005096
Eupecaria_A	ANCESTRAL SPECIES	36											ENSGT00940000156950.b	ENSGT00940000156344.a	ENSGT00940000160772	ENSGT00940000158356	ENSGT00390000009873	ENSGT00940000153676.a ##22	ENSGT01030000234566.e.b.a.a.a.a	ENSGT00940000156167.b	ENSGT00390000004697	ENSGT01020000230338.a.b.b.a.a.b.a.a.a	ENSGT00940000168028	ENSGT00940000165127.a	ENSGT00390000013973.A.a.c.b.a	ENSGT00390000008711.h	ENSGT01100000263483.E.b.b.n	ENSGT00940000157807.g.b	ENSGT00390000003751.a	ENSGT00940000156001.c	ENSGT00940000153576.c.a.a.b	ENSGT00940000165861	ENSGT00390000005096
Eupecaria_B	ANCESTRAL SPECIES	34										ENSGT01100000263495.A.a.a.n	ENSGT00940000156950.b	ENSGT00940000156344.a	ENSGT00940000160772	ENSGT00940000158356	ENSGT00390000009873	ENSGT00940000153676.a ##22	ENSGT01030000234566.e.b.a.a.a.a	ENSGT00940000156167.b	ENSGT00390000004697	ENSGT01020000230338.a.b.b.a.a.b.a.a.a	ENSGT00940000168028	ENSGT00940000165127.a	ENSGT00390000013973.A.a.c.b.a	ENSGT00390000008711.h	ENSGT01100000263483.E.b.b.n	ENSGT00940000157807.g.b	ENSGT00390000003751.a	ENSGT00940000156001.c	ENSGT00940000153576.c.a.a.b	ENSGT00940000165861	ENSGT00390000005096
Perciformes	ANCESTRAL SPECIES	45					ENSGT00390000003049.b.a	ENSGT00390000011272	ENSGT00390000013419	ENSGT00940000158105	ENSGT00940000165522.b	ENSGT00390000009223	ENSGT00940000155484.b	ENSGT01030000234627.a.b.a.a.b.a	ENSGT00940000160772	ENSGT00940000158356	ENSGT00390000009873	ENSGT00940000153676.a ##22	ENSGT01030000234566.e.b.a.a.a.a	ENSGT00940000156167.b	ENSGT00390000004697	ENSGT00940000168028	ENSGT00940000165823.d	ENSGT00940000153322.B.c	ENSGT00940000165127.a	ENSGT00390000008711.h	ENSGT01100000263483.E.b.b.n	ENSGT00940000157807.g.b	ENSGT00390000003751.a	ENSGT00940000156001.c	ENSGT00940000153576.c.a.a.b	ENSGT00940000165861	ENSGT00390000005096
Perciformes_a	ANCESTRAL SPECIES	52					ENSGT00390000003049.b.a	ENSGT00390000011272	ENSGT00390000013419	ENSGT00940000158105	ENSGT00940000165522.b	ENSGT00390000009223	ENSGT00940000155484.b	ENSGT01030000234627.a.b.a.a.b.a	ENSGT00940000160772	ENSGT00940000158356	ENSGT00390000009873	ENSGT00940000153676.a ##22	ENSGT01030000234566.e.b.a.a.a.a	ENSGT00940000156167.b	ENSGT00390000004697	ENSGT00940000168028	ENSGT00940000165823.d	ENSGT00940000153322.B.c	ENSGT00940000165127.a	ENSGT00390000008711.h	ENSGT01100000263483.E.b.b.n	ENSGT00940000157807.g.b	ENSGT00390000003751.a	ENSGT00940000156001.c	ENSGT00940000153576.c.a.a.b	ENSGT00940000165861	ENSGT00390000005096
Pike perch	MODERN SPECIES	128				ndufs8a (ENSSLUG00000023780)	TMEM187 (ENSSLUG00000023784)	saraf (ENSSLUG00000023786)	galnt7 (ENSSLUG00000023824)	ENSSLUG00000023991	spcs3 (ENSSLUG00000023996)	kdm2aa (ENSSLUG00000024022)	ENSSLUG00000024091	stx3a (ENSSLUG00000002960)	hand2 (ENSSLUG00000003576)	fbxo8 (ENSSLUG00000003581)	cep44 (ENSSLUG00000003601)	dctd (ENSSLUG00000003622) ##22	TENM3 (ENSSLUG00000004050)
Channel bull blenny	MODERN SPECIES		ENSCGOG00000014531	ENSCGOG00000014528	patl1 (ENSCGOG00000014516)	ndufs8a (ENSCGOG00000014513)	TMEM187 (ENSCGOG00000014510)	saraf (ENSCGOG00000014509)	galnt7 (ENSCGOG00000014102)	ENSCGOG00000014094	ENSCGOG00000014092	spcs3 (ENSCGOG00000014087)	kdm2aa (ENSCGOG00000013996)	stx3a (ENSCGOG00000013994)	hand2 (ENSCGOG00000013992)	fbxo8 (ENSCGOG00000013990)	cep44 (ENSCGOG00000013986)	dctd (ENSCGOG00000013980) ##22	TENM3 (ENSCGOG00000007717)	ENSCGOG00000007580	ENSCGOG00000007578	ENSCGOG00000007576	vegfc (ENSCGOG00000007575)	ENSCGOG00000007570	ENSCGOG00000007562	ENSCGOG00000007561	ENSCGOG00000007560	ADISSP (ENSCGOG00000007559)	ENSCGOG00000007556	tmx2b (ENSCGOG00000007447)	zdhhc5a (ENSCGOG00000007444)	slc43a1b (ENSCGOG00000007195)	ENSCGOG00000001541
Cottioidei	ANCESTRAL SPECIES	3	ENSGT00390000002918.a.a	ENSGT00940000155777.b	ENSGT00950000183026.A.a.a.b	ENSGT00940000163551.i.b	ENSGT00520000055649.a	ENSGT00390000003049.b.a	ENSGT00390000013419	ENSGT00940000158105	ENSGT00940000165522.b	ENSGT00390000009223	ENSGT00940000155484.b	ENSGT01030000234627.a.b.a.a.b.a	ENSGT00940000160772	ENSGT00940000158356	ENSGT00390000009873	ENSGT00940000153676.a ##22	ENSGT01030000234566.e.b.a.a.a.a	ENSGT00940000156167.b	ENSGT00390000004697	ENSGT00940000168028	ENSGT00940000165823.d	ENSGT00390000008711.h	ENSGT00940000157807.g.b	ENSGT00390000003751.a	ENSGT00940000156001.c	ENSGT01020000230351.B.j.a	ENSGT00390000005096	ENSGT00940000165861	ENSGT00940000153576.c.a.a.b	ENSGT00940000157122.b.b	ENSGT00940000155062.a
Stickleback	MODERN SPECIES	4	hmgb2a (ENSGACG00000016482)	pmm2 (ENSGACG00000016475)	mtmr7b (ENSGACG00000016465)	ENSGACG00000016459	ENSGACG00000016455	patl1 (ENSGACG00000016448)	ndufs8a (ENSGACG00000016442)	saraf (ENSGACG00000016440)	galnt7 (ENSGACG00000016436)	ENSGACG00000016432	spcs3 (ENSGACG00000016427)	kdm2aa (ENSGACG00000016421)	stx3a (ENSGACG00000016420)	hand2 (ENSGACG00000016418)	fbxo8 (ENSGACG00000016412)	dctd (ENSGACG00000016400) ##22	TENM3 (ENSGACG00000016390)	vegfc (ENSGACG00000016386)	ENSGACG00000016383	ENSGACG00000016382	ENSGACG00000016379	ENSGACG00000016377	ENSGACG00000016375	TESK1 (ENSGACG00000016374)	tmx2b (ENSGACG00000016364)	zdhhc5a (ENSGACG00000016361)	p2rx3b (ENSGACG00000016347)	ENSGACG00000016342	slc43a1b (ENSGACG00000016335)	ENSGACG00000016328	RPS6KB2 (ENSGACG00000016324)
Lumpfish	MODERN SPECIES		pmm2 (ENSCLMG00005018271)	ENSCLMG00005018269	ENSCLMG00005018268	patl1 (ENSCLMG00005018267)	ndufs8a (ENSCLMG00005018255)	saraf (ENSCLMG00005018254)	galnt7 (ENSCLMG00005018234)	ENSCLMG00005018232	spcs3 (ENSCLMG00005018231)	ENSCLMG00005018229	ENSCLMG00005018227	ENSCLMG00005018192	hand2 (ENSCLMG00005018173)	fbxo8 (ENSCLMG00005018169)	ENSCLMG00005018168	dctd (ENSCLMG00005018167) ##22	TENM3 (ENSCLMG00005000572)	ENSCLMG00005000038	ENSCLMG00005000037	vegfc (ENSCLMG00005000028)	ENSCLMG00005000018	ENSCLMG00005000015	ENSCLMG00005000009
Eupecaria_C	ANCESTRAL SPECIES	22										ENSGT01100000263495.A.a.a.n	ENSGT00940000156950.b	ENSGT00940000156344.a	ENSGT00940000160772	ENSGT00940000158356	ENSGT00390000009873	ENSGT00940000153676.a ##22	ENSGT01030000234566.e.b.a.a.a.a	ENSGT00940000156167.b	ENSGT00390000004697	ENSGT01020000230338.a.b.b.a.a.b.a.a.a	ENSGT00940000168028	ENSGT00940000165127.a	ENSGT00390000013973.A.a.c.b.a	ENSGT00390000008711.h	ENSGT01100000263483.E.b.b.n	ENSGT00940000157807.g.b	ENSGT00390000003751.a	ENSGT00940000156001.c	ENSGT00940000153576.c.a.a.b	ENSGT00940000165861	ENSGT00390000005096
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	21										ENSGT01100000263495.A.a.a.n	ENSGT00940000156950.b	ENSGT00940000156344.a	ENSGT00940000160772	ENSGT00940000158356	ENSGT00390000009873	ENSGT00940000153676.a ##22	ENSGT01030000234566.e.b.a.a.a.a	ENSGT00940000156167.b	ENSGT00390000004697	ENSGT01020000230338.a.b.b.a.a.b.a.a.a	ENSGT00940000168028	ENSGT00940000165127.a	ENSGT00390000013973.A.a.c.b.a	ENSGT00390000008711.h	ENSGT01100000263483.E.b.b.n	ENSGT00940000157807.g.b	ENSGT00390000003751.a	ENSGT00940000156001.c	ENSGT00940000153576.c.a.a.b	ENSGT00940000165861	ENSGT00390000005096
Large yellow croaker	MODERN SPECIES	481	ENSLCRG00005017308	ENSLCRG00005017312	dnai4 (ENSLCRG00005017327)	ENSLCRG00005017332	xpr1b (ENSLCRG00005017340)	ttpa (ENSLCRG00005017518)	ENSLCRG00005017523	ENSLCRG00005017525	tyw3 (ENSLCRG00005017527)	PLPPR5 (ENSLCRG00005017528)	ENSLCRG00005017532	hand2 (ENSLCRG00005017535)	fbxo8 (ENSLCRG00005017537)	cep44 (ENSLCRG00005017541)	ENSLCRG00005017543	dctd (ENSLCRG00005017545) ##22	TENM3 (ENSLCRG00005017609)	ENSLCRG00005020854	ENSLCRG00005020856	ENSLCRG00005020857	vegfc (ENSLCRG00005020858)	ENSLCRG00005020860	ENSLCRG00005020861	ENSLCRG00005020862	ENSLCRG00005020863	TESK1 (ENSLCRG00005020864)	tmx2b (ENSLCRG00005020868)	zdhhc5a (ENSLCRG00005020872)	slc43a1b (ENSLCRG00005020883)	ENSLCRG00005020894	pold4 (ENSLCRG00005021268)
European seabass	DUPLICATION
European seabass	DUPLICATION
European seabass	MODERN SPECIES	159	ENSDLAG00005033266	ENSDLAG00005034012	ENSDLAG00005031452	ENSDLAG00005026521	ENSDLAG00005022134	ENSDLAG00005022139	ENSDLAG00005026453	ENSDLAG00005007693	ENSDLAG00005007576	ENSDLAG00005030857	ENSDLAG00005034622	ENSDLAG00005030329	ENSDLAG00005028518	ENSDLAG00005000619	ENSDLAG00005014229 ##22	ENSDLAG00005031808 ##22	ENSDLAG00005028542	ENSDLAG00005029238	ENSDLAG00005005032	ENSDLAG00005004998
European seabass	MODERN SPECIES	159	ENSDLAG00005031323	ENSDLAG00005033266	ENSDLAG00005034012	ENSDLAG00005031452	ENSDLAG00005026521	ENSDLAG00005022134	ENSDLAG00005022139	ENSDLAG00005026453	ENSDLAG00005007693	ENSDLAG00005007576	ENSDLAG00005030857	ENSDLAG00005034622	ENSDLAG00005030329	ENSDLAG00005028518	ENSDLAG00005000619	ENSDLAG00005014229 ##22	ENSDLAG00005031808 ##22	ENSDLAG00005028542	ENSDLAG00005029238	ENSDLAG00005005032	ENSDLAG00005004998
European seabass	MODERN SPECIES	20	ENSDLAG00005033112	ENSDLAG00005028125	ENSDLAG00005030918	ENSDLAG00005032186	ENSDLAG00005003170	ENSDLAG00005028393	ENSDLAG00005010249	ENSDLAG00005026375	ENSDLAG00005009068	ENSDLAG00005008941	ENSDLAG00005008934	hand2 (ENSDLAG00005008932)	ENSDLAG00005030601	cep44 (ENSDLAG00005008903)	ENSDLAG00005010255	ENSDLAG00005030132 ##22	ENSDLAG00005034844	ENSDLAG00005011196	ENSDLAG00005028809	ENSDLAG00005011216	ENSDLAG00005011264	ENSDLAG00005011278	ENSDLAG00005011282	ENSDLAG00005011297	ENSDLAG00005011312	ENSDLAG00005011372	ENSDLAG00005026455	slc43a1b (ENSDLAG00005011401)	ENSDLAG00005011599	pold4 (ENSDLAG00005030456)	p2rx3b (ENSDLAG00005014004)
Gilthead seabream	DUPLICATION
Gilthead seabream	MODERN SPECIES		dtd1 (ENSSAUG00010006855)	ENSSAUG00010006857	ENSSAUG00010006872	RPS6KB2 (ENSSAUG00010007075)	ENSSAUG00010008266	ENSSAUG00010008268	ENSSAUG00010008286	ENSSAUG00010008526	neurl1aa (ENSSAUG00010008681)	SH3PXD2A (ENSSAUG00010008689)	stn1 (ENSSAUG00010008836)	slkb (ENSSAUG00010008906)	ENSSAUG00010012937	gria2a (ENSSAUG00010012962)	dctd (ENSSAUG00010013208) ##22	dctd (ENSSAUG00010013206) ##22	dctd (ENSSAUG00010013210) ##22	dctd (ENSSAUG00010013213) ##22	TENM3 (ENSSAUG00010013265)	ENSSAUG00010020415	ENSSAUG00010020418	ENSSAUG00010020420	dhrs12 (ENSSAUG00010020429)	vegfc (ENSSAUG00010020470)	ENSSAUG00010020476	ENSSAUG00010020482	ENSSAUG00010020483	ENSSAUG00010020485	ENSSAUG00010020486	ENSSAUG00010020488	ENSSAUG00010020490
Gilthead seabream	DUPLICATION
Gilthead seabream	DUPLICATION
Gilthead seabream	DUPLICATION
Gilthead seabream	MODERN SPECIES		SLC24A3 (ENSSAUG00010006850)	dtd1 (ENSSAUG00010006855)	ENSSAUG00010006857	ENSSAUG00010006872	RPS6KB2 (ENSSAUG00010007075)	ENSSAUG00010008266	ENSSAUG00010008268	ENSSAUG00010008286	ENSSAUG00010008526	neurl1aa (ENSSAUG00010008681)	SH3PXD2A (ENSSAUG00010008689)	stn1 (ENSSAUG00010008836)	slkb (ENSSAUG00010008906)	ENSSAUG00010012937	gria2a (ENSSAUG00010012962)	dctd (ENSSAUG00010013208) ##22	dctd (ENSSAUG00010013206) ##22	dctd (ENSSAUG00010013210) ##22	dctd (ENSSAUG00010013213) ##22	TENM3 (ENSSAUG00010013265)	ENSSAUG00010020415	ENSSAUG00010020418	ENSSAUG00010020420	dhrs12 (ENSSAUG00010020429)	vegfc (ENSSAUG00010020470)	ENSSAUG00010020476	ENSSAUG00010020482	ENSSAUG00010020483	ENSSAUG00010020485	ENSSAUG00010020486	ENSSAUG00010020488
Gilthead seabream	MODERN SPECIES		ENSSAUG00010006872	RPS6KB2 (ENSSAUG00010007075)	ENSSAUG00010008266	ENSSAUG00010008268	ENSSAUG00010008286	ENSSAUG00010008526	neurl1aa (ENSSAUG00010008681)	SH3PXD2A (ENSSAUG00010008689)	stn1 (ENSSAUG00010008836)	slkb (ENSSAUG00010008906)	ENSSAUG00010012937	gria2a (ENSSAUG00010012962)	dctd (ENSSAUG00010013208) ##22	dctd (ENSSAUG00010013206) ##22	dctd (ENSSAUG00010013210) ##22	dctd (ENSSAUG00010013213) ##22	TENM3 (ENSSAUG00010013265)	ENSSAUG00010020415	ENSSAUG00010020418	ENSSAUG00010020420	dhrs12 (ENSSAUG00010020429)	vegfc (ENSSAUG00010020470)	ENSSAUG00010020476	ENSSAUG00010020482	ENSSAUG00010020483	ENSSAUG00010020485	ENSSAUG00010020486	ENSSAUG00010020488	ENSSAUG00010020490	ENSSAUG00010020493	TMX2 (ENSSAUG00010020495)
Gilthead seabream	MODERN SPECIES	76																dctd (ENSSAUG00010019957) ##22
Gilthead seabream	MODERN SPECIES		ENSSAUG00010006857	ENSSAUG00010006872	RPS6KB2 (ENSSAUG00010007075)	ENSSAUG00010008266	ENSSAUG00010008268	ENSSAUG00010008286	ENSSAUG00010008526	neurl1aa (ENSSAUG00010008681)	SH3PXD2A (ENSSAUG00010008689)	stn1 (ENSSAUG00010008836)	slkb (ENSSAUG00010008906)	ENSSAUG00010012937	gria2a (ENSSAUG00010012962)	dctd (ENSSAUG00010013208) ##22	dctd (ENSSAUG00010013206) ##22	dctd (ENSSAUG00010013210) ##22	dctd (ENSSAUG00010013213) ##22	TENM3 (ENSSAUG00010013265)	ENSSAUG00010020415	ENSSAUG00010020418	ENSSAUG00010020420	dhrs12 (ENSSAUG00010020429)	vegfc (ENSSAUG00010020470)	ENSSAUG00010020476	ENSSAUG00010020482	ENSSAUG00010020483	ENSSAUG00010020485	ENSSAUG00010020486	ENSSAUG00010020488	ENSSAUG00010020490	ENSSAUG00010020493
Ballan wrasse	DUPLICATION
Ballan wrasse	DUPLICATION
Ballan wrasse	DUPLICATION
Ballan wrasse	MODERN SPECIES	1049																ENSLBEG00000014227 ##22	ENSLBEG00000014169	ENSLBEG00000014135 ##22
Ballan wrasse	MODERN SPECIES	2692																ENSLBEG00000008535 ##22	ENSLBEG00000008507 ##22
Ballan wrasse	MODERN SPECIES	1049														ENSLBEG00000014227 ##22	ENSLBEG00000014169	ENSLBEG00000014135 ##22
Ballan wrasse	DUPLICATION
Ballan wrasse	MODERN SPECIES	2692															ENSLBEG00000008535 ##22	ENSLBEG00000008507 ##22
Ballan wrasse	MODERN SPECIES	1525															ENSLBEG00000015283	ENSLBEG00000015296 ##22
Tetraodontidae	ANCESTRAL SPECIES	339																ENSGT00940000153676.a ##22	ENSGT01030000234566.e.b.a.a.a.a
Fugu	MODERN SPECIES	8	rps6 (ENSTRUG00000025649)	ENSTRUG00000009584	aptx (ENSTRUG00000009794)	scpp1 (ENSTRUG00000009840)	ENSTRUG00000009856	scpp2 (ENSTRUG00000010164)	ENSTRUG00000031165	scpp3b (ENSTRUG00000010211)	scpp4 (ENSTRUG00000010217)	scpp5 (ENSTRUG00000010241)	cnga1a (ENSTRUG00000010274)	tacr3 (ENSTRUG00000017556)	bdh2 (ENSTRUG00000010690)	ENSTRUG00000010782	cisd2 (ENSTRUG00000010955)	dctd (ENSTRUG00000010985) ##22	scpp3c (ENSTRUG00000010197)	vegfc (ENSTRUG00000011792)	ENSTRUG00000011908	rab11fip4b (ENSTRUG00000011924)	utp6 (ENSTRUG00000012005)	suz12b (ENSTRUG00000012137)	tefm (ENSTRUG00000012221)	ENSTRUG00000012247	rhot1b (ENSTRUG00000012264)	rhbdl3 (ENSTRUG00000012487)	znf207b (ENSTRUG00000021140)	ENSTRUG00000025813	ENSTRUG00000012583	septin9b (ENSTRUG00000012787)	ENSTRUG00000023566
Tetraodon	MODERN SPECIES	10	rps6 (ENSTNIG00000010572)	ENSTNIG00000001131	ENSTNIG00000010571	aptx (ENSTNIG00000010570)	ENSTNIG00000001180	ENSTNIG00000010569	odam (ENSTNIG00000010568)	ENSTNIG00000010567	ENSTNIG00000000359	ENSTNIG00000010566	scpp5 (ENSTNIG00000010565)	cnga1a (ENSTNIG00000010564)	ENSTNIG00000010563	bdh2 (ENSTNIG00000010562)	ENSTNIG00000010561	dctd (ENSTNIG00000010560) ##22	TENM3 (ENSTNIG00000005377)	slc2a15a (ENSTNIG00000006363)	fgf8a (ENSTNIG00000006362)	fbxw4 (ENSTNIG00000005242)	wbp1la (ENSTNIG00000005241)	RNF166 (ENSTNIG00000004433)	ENSTNIG00000004434	cyp17a1 (ENSTNIG00000019678)	ENSTNIG00000005961	ENSTNIG00000005463	FAM98A (ENSTNIG00000005464)	vps8 (ENSTNIG00000005465)	ENSTNIG00000000969	ENSTNIG00000018675	ENSTNIG00000019603
Ovalentaria	ANCESTRAL SPECIES		ENSGT00940000158942.a	ENSGT00950000183012.A.b	ENSGT00610000087490	ENSGT00510000052942	ENSGT00510000052596.b	ENSGT00990000203830	ENSGT01030000234627.a.b.a.a.b.a	ENSGT00940000155484.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00940000165522.b	ENSGT00940000158105	ENSGT00940000160772	ENSGT00940000158356	ENSGT00390000009873	ENSGT00940000153676.a ##22	ENSGT01030000234566.e.b.a.a.a.a	ENSGT00940000156167.b	ENSGT00390000004697	ENSGT00940000168028	ENSGT00940000165127.a	ENSGT00390000013973.A.a.c.b.a	ENSGT00390000008711.h	ENSGT01100000263483.E.b.b	ENSGT00940000157807.g.b	ENSGT00390000003751.a	ENSGT00940000156001.c	ENSGT00940000153576.c.a.a.b	ENSGT00940000165861	ENSGT00390000005096	ENSGT01020000230351.B.j.a
Ovalentaria_B	ANCESTRAL SPECIES	54											ENSGT00940000156950.b	ENSGT00940000156344.a	ENSGT00940000160772	ENSGT00940000158356	ENSGT00390000009873	ENSGT00940000153676.a ##22	ENSGT01030000234566.e.b.a.a.a.a	ENSGT01030000234566.e.b.a.a.b	ENSGT00940000156167.b	ENSGT00390000004697	ENSGT00390000013419	ENSGT00940000158105	ENSGT00940000165522.b	ENSGT00390000009223	ENSGT00940000155484.b	ENSGT01030000234627.a.b.a.a.b.a	ENSGT00990000203830	ENSGT00510000052596.b	ENSGT00510000052942	ENSGT00950000183012.A.b	ENSGT00940000158942.a
Cichlidae	ANCESTRAL SPECIES	22	ENSGT00940000156464	ENSGT00940000156714.a	ENSGT01030000234564.a.a.a.a.b.a	ENSGT01060000248676.b.a.b	ENSGT00940000155623	ENSGT00390000003990	ENSGT00940000155699.a.b	ENSGT00510000048685.g.b	ENSGT00390000013762.b.b	ENSGT00940000158830	ENSGT00510000048466	ENSGT00940000155982.e.a	ENSGT00940000157612	ENSGT01090000260040.b.b.b.a.n	ENSGT00940000155443.c	ENSGT00940000153676.a ##22	ENSGT01030000234566.e.b.a.a.a.a	ENSGT01030000234566.e.b.a.a.b	ENSGT00390000008069	ENSGT00390000007594	ENSGT00940000164602	ENSGT00940000166410	ENSGT00940000158100	ENSGT00390000003967.a	ENSGT00940000162008	ENSGT00390000014780	ENSGT00950000183032.B.b.a	ENSGT00420000029802	ENSGT00940000159551	ENSGT00390000001205.b	ENSGT00940000153887.A
Pseudocrenilabrinae	ANCESTRAL SPECIES	8	ENSGT00940000156464	ENSGT00940000156714.a	ENSGT01030000234564.a.a.a.a.b.a	ENSGT01060000248676.b.a.b	ENSGT00940000155623	ENSGT00390000003990	ENSGT00940000155699.a.b	ENSGT00510000048685.g.b	ENSGT00390000013762.b.b	ENSGT00940000158830	ENSGT00510000048466	ENSGT00940000155982.e.a	ENSGT00940000157612	ENSGT01090000260040.b.b.b.a.n	ENSGT00940000155443.c	ENSGT00940000153676.a ##22	ENSGT01030000234566.e.b.a.a.a.a	ENSGT01030000234566.e.b.a.a.b	ENSGT00390000008069	ENSGT00390000007594	ENSGT00940000164602	ENSGT00940000166410	ENSGT00940000158100	ENSGT00390000003967.a	ENSGT00940000162008	ENSGT00390000014780	ENSGT00950000183032.B.b.a	ENSGT00420000029802	ENSGT00940000159551	ENSGT00390000001205.b	ENSGT00940000153887.A
Nile tilapia	DUPLICATION
Nile tilapia	MODERN SPECIES	10	asap2a (ENSONIG00000003679)	itgb1bp1 (ENSONIG00000003692)	CPSF3 (ENSONIG00000003694)	DNAJC30 (ENSONIG00000003697)	ENSONIG00000037802	ENSONIG00000003699	lrr1 (ENSONIG00000041270)	ENSONIG00000003703	klf11 (ENSONIG00000003704)	grhl1 (ENSONIG00000003707)	ywhaqb (ENSONIG00000003712)	adam17a (ENSONIG00000003714)	ENSONIG00000036047	nudt22 (ENSONIG00000036618)	iah1 (ENSONIG00000020093)	ENSONIG00000020094 ##22	iah1 (ENSONIG00000032222)	ENSONIG00000020095	ltk (ENSONIG00000020096)	itpka (ENSONIG00000035779)	ivd (ENSONIG00000020098)	BAHD1 (ENSONIG00000037833)	PRLHR (ENSONIG00000020099)	ccdc32 (ENSONIG00000020100)	pcmtl (ENSONIG00000020101)	rpusd2 (ENSONIG00000020102)	disp2 (ENSONIG00000020103)	ENSONIG00000020104	eml1 (ENSONIG00000020105)	EVL (ENSONIG00000031474)	degs2 (ENSONIG00000020107)
Nile tilapia	MODERN SPECIES	18	slc22a7a (ENSONIG00000016109)	ENSONIG00000027023	ENSONIG00000031300	ENSONIG00000030581	tpcn3 (ENSONIG00000016102)	ENSONIG00000016098	ENSONIG00000041395	saraf (ENSONIG00000016096)	ENSONIG00000040179	glur2a (ENSONIG00000016067)	glrba (ENSONIG00000041765)	ndufs8a (ENSONIG00000016061)	ENSONIG00000039977	hand2 (ENSONIG00000042267)	fbxo8 (ENSONIG00000038733)	dctd (ENSONIG00000032541) ##22	TENM3 (ENSONIG00000016025)	ENSONIG00000040542	ENSONIG00000041399	ENSONIG00000037603	ENSONIG00000018443	ENSONIG00000018171	ENSONIG00000018169	ENSONIG00000037267	ENSONIG00000018167	galnt7 (ENSONIG00000018162)	ENSONIG00000032229	spcs3 (ENSONIG00000032171)	kdm2aa (ENSONIG00000018158)	stx3a (ENSONIG00000018155)	ENSONIG00000037790
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	6	ENSGT00940000156464	ENSGT00940000156714.a	ENSGT01030000234564.a.a.a.a.b.a	ENSGT01060000248676.b.a.b	ENSGT00940000155623	ENSGT00390000003990	ENSGT00940000155699.a.b	ENSGT00510000048685.g.b	ENSGT00390000013762.b.b	ENSGT00940000158830	ENSGT00510000048466	ENSGT00940000155982.e.a	ENSGT00940000157612	ENSGT01090000260040.b.b.b.a.n	ENSGT00940000155443.c	ENSGT00940000153676.a ##22	ENSGT01030000234566.e.b.a.a.a.a	ENSGT01030000234566.e.b.a.a.b	ENSGT00390000008069	ENSGT00390000007594	ENSGT00940000164602	ENSGT00940000166410	ENSGT00940000158100	ENSGT00390000003967.a	ENSGT00940000162008	ENSGT00390000014780	ENSGT00950000183032.B.b.a	ENSGT00420000029802	ENSGT00940000159551	ENSGT00390000001205.b	ENSGT00940000153887.A
Lyretail cichlid	DUPLICATION
Lyretail cichlid	MODERN SPECIES	299	id2a (ENSNBRG00000010844)	KIDINS220 (ENSNBRG00000010767)	MBOAT2 (ENSNBRG00000010697)	ENSNBRG00000010674	ENSNBRG00000010603	itgb1bp1 (ENSNBRG00000010578)	CPSF3 (ENSNBRG00000010525)	DNAJC30 (ENSNBRG00000010503)	ENSNBRG00000010486	lrr1 (ENSNBRG00000010478)	ENSNBRG00000010465	klf11b (ENSNBRG00000010457)	grhl1 (ENSNBRG00000010427)	ywhaqb (ENSNBRG00000010401)	adam17a (ENSNBRG00000010379)	ENSNBRG00000010350 ##22	iah1 (ENSNBRG00000010337)	ENSNBRG00000010269	ltk (ENSNBRG00000010198)	itpka (ENSNBRG00000010168)	ivd (ENSNBRG00000010158)	BAHD1 (ENSNBRG00000010126)	PRLHR (ENSNBRG00000010110)	ccdc32 (ENSNBRG00000010101)	pcmtl (ENSNBRG00000010083)	rpusd2 (ENSNBRG00000010070)	disp2 (ENSNBRG00000010045)	ENSNBRG00000010006	eml1 (ENSNBRG00000009925)	evla (ENSNBRG00000009894)	degs2 (ENSNBRG00000009880)
Lyretail cichlid	MODERN SPECIES	895																dctd (ENSNBRG00000006300) ##22
Haplochromini	ANCESTRAL SPECIES	7	ENSGT00390000013670	ENSGT00940000157701	ENSGT00940000156464	ENSGT00940000156714.a	ENSGT01030000234564.a.a.a.a.b.a	ENSGT00940000155623	ENSGT00390000003990	ENSGT00940000155699.a.b	ENSGT00510000048685.g.b	ENSGT00390000013762.b.b	ENSGT00940000158830	ENSGT00510000048466	ENSGT00940000157612	ENSGT01090000260040.b.b.b.a.n	ENSGT00940000155443.c	ENSGT00940000153676.a ##22	ENSGT01030000234566.e.b.a.a.a.a	ENSGT00490000044642.a.a.a.a.a.b.b.d	ENSGT00390000008069	ENSGT00390000007594	ENSGT00940000164602	ENSGT00940000166410	ENSGT00940000158100	ENSGT00390000003967.a	ENSGT00940000162008	ENSGT00390000014780	ENSGT00950000183032.B.b.a	ENSGT00420000029802	ENSGT00940000159551	ENSGT00390000001205.b	ENSGT00940000153887.A
Haplochromini_A	ANCESTRAL SPECIES	7	ENSGT00390000013670	ENSGT00940000157701	ENSGT00940000156464	ENSGT00940000156714.a	ENSGT01030000234564.a.a.a.a.b.a	ENSGT00940000155623	ENSGT00390000003990	ENSGT00940000155699.a.b	ENSGT00510000048685.g.b	ENSGT00390000013762.b.b	ENSGT00940000158830	ENSGT00510000048466	ENSGT00940000157612	ENSGT01090000260040.b.b.b.a.n	ENSGT00940000155443.c	ENSGT00940000153676.a ##22	ENSGT01030000234566.e.b.a.a.a.a	ENSGT00490000044642.a.a.a.a.a.b.b.d	ENSGT00390000008069	ENSGT00390000007594	ENSGT00940000164602	ENSGT00940000166410	ENSGT00940000158100	ENSGT00390000003967.a	ENSGT00940000162008	ENSGT00390000014780	ENSGT00950000183032.B.b.a	ENSGT00420000029802	ENSGT00940000159551	ENSGT00390000001205.b	ENSGT00940000153887.A
Haplochromini_B	ANCESTRAL SPECIES	47	ENSGT00940000160591.a.a	ENSGT01020000230351.B.j.a	ENSGT00390000005096	ENSGT00940000165861	ENSGT00940000153576.c.a.a.b	ENSGT00940000156001.c	ENSGT00390000003751.a	ENSGT00940000157807.g.b	ENSGT00940000178757	ENSGT00390000008711.h	ENSGT00940000165127.a	ENSGT00940000168028	ENSGT00940000174164	ENSGT00940000160772	ENSGT00940000158356	ENSGT00940000153676.a ##22	ENSGT01030000234566.e.b.a.a.a.a	ENSGT00940000154348.c.b.b.a.b.d.b.h.a.a.a.b.a.a	ENSGT00940000156167.b	ENSGT00390000004697	ENSGT00390000014512.d	ENSGT00940000164531	ENSGT00940000159590	ENSGT00940000156314.b	ENSGT00940000160776	ENSGT00390000012679	ENSGT00940000155246	ENSGT00390000018879	ENSGT00390000005535	ENSGT00940000155557.jc.b	ENSGT00400000025126
Eastern happy	MODERN SPECIES	18	p2rx3b (ENSACLG00000018368)	pold4 (ENSACLG00000018341)	ENSACLG00000018125	slc43a1b (ENSACLG00000018013)	zdhhc5a (ENSACLG00000017981)	tmx2b (ENSACLG00000017930)	ENSACLG00000017924	ENSACLG00000017914	ENSACLG00000017809	ENSACLG00000017800	ENSACLG00000017678	ENSACLG00000017613	ENSACLG00000017600	hand2 (ENSACLG00000017592)	fbxo8 (ENSACLG00000017521)	dctd (ENSACLG00000017470) ##22	TENM3 (ENSACLG00000017323)	ENSACLG00000017209	ENSACLG00000017165	ENSACLG00000017161	vegfc (ENSACLG00000017154)	ENSACLG00000017133	ENSACLG00000017092	mrpl4 (ENSACLG00000017038)	ENSACLG00000017009	ENSACLG00000016925	sp2 (ENSACLG00000016868)	socs7 (ENSACLG00000016817)	ENSACLG00000016799	mrpl45 (ENSACLG00000016765)	npepps (ENSACLG00000016681)
Zebra mbuna	DUPLICATION
Zebra mbuna	DUPLICATION
Zebra mbuna	MODERN SPECIES	1101	ENSMZEG00005005837	id2a (ENSMZEG00005005852)	KIDINS220 (ENSMZEG00005005897)	MBOAT2 (ENSMZEG00005006092)	asap2a (ENSMZEG00005006144)	itgb1bp1 (ENSMZEG00005006230)	CPSF3 (ENSMZEG00005006258)	ENSMZEG00005006331	ENSMZEG00005006350	lrr1 (ENSMZEG00005006361)	ENSMZEG00005006380	ENSMZEG00005006395	grhl1 (ENSMZEG00005006420)	ywhaqb (ENSMZEG00005006438)	adam17a (ENSMZEG00005006451)	ENSMZEG00005006476 ##22	iah1 (ENSMZEG00005006516)	ENSMZEG00005006585	ltk (ENSMZEG00005006632)	itpka (ENSMZEG00005006738)	ENSMZEG00005006748	ENSMZEG00005006768	ivd (ENSMZEG00005006807)	ENSMZEG00005006856	PRLHR (ENSMZEG00005006870)	ccdc32 (ENSMZEG00005006894)	pcmtl (ENSMZEG00005006920)	rpusd2 (ENSMZEG00005006947)	disp2 (ENSMZEG00005006952)	ENSMZEG00005006975	eml1 (ENSMZEG00005007007)
Zebra mbuna	MODERN SPECIES	130	ENSMZEG00005027974	ENSMZEG00005027943	ENSMZEG00005027937	ENSMZEG00005027936	ENSMZEG00005027935	ENSMZEG00005027934	ENSMZEG00005027933	ENSMZEG00005027932	ENSMZEG00005027931	ENSMZEG00005027930	ENSMZEG00005027929	ENSMZEG00005027928	ENSMZEG00005027927	ENSMZEG00005027926	ENSMZEG00005027924	ENSMZEG00005027923 ##22	iah1 (ENSMZEG00005027920)	RPAP1 (ENSMZEG00005027918)
Zebra mbuna	MODERN SPECIES	1109	gstt1b (ENSMZEG00005001399)	ddt (ENSMZEG00005001156)	chchd10 (ENSMZEG00005001153)	ENSMZEG00005001101	si:dkey-102c8.3 (ENSMZEG00005001077)	ENSMZEG00005001070	ENSMZEG00005001013	ENSMZEG00005001000	spcs3 (ENSMZEG00005000992)	kdm2aa (ENSMZEG00005000929)	ENSMZEG00005000877	stx3a (ENSMZEG00005000834)	ENSMZEG00005000814	ENSMZEG00005000808	fbxo8 (ENSMZEG00005000763)	dctd (ENSMZEG00005000710) ##22	TENM3 (ENSMZEG00005000504)	slc43a1b (ENSMZEG00005000435)	zdhhc5a (ENSMZEG00005000423)	tmx2b (ENSMZEG00005000376)	ENSMZEG00005000366	ENSMZEG00005000362	ENSMZEG00005000327	ENSMZEG00005000296	ENSMZEG00005000193	ENSMZEG00005000168	ENSMZEG00005000107	ugp2a (ENSMZEG00005015363)	mdh1aa (ENSMZEG00005015339)	otx2a (ENSMZEG00005015325)	mdh1aa (ENSMZEG00005015317)
P. nyererei	DUPLICATION
P. nyererei	MODERN SPECIES	305	rsad2 (ENSPNYG00000020767)	rnf144aa (ENSPNYG00000020780)	id2a (ENSPNYG00000020798)	KIDINS220 (ENSPNYG00000020827)	MBOAT2 (ENSPNYG00000020920)	asap2a (ENSPNYG00000020960)	itgb1bp1 (ENSPNYG00000021027)	CPSF3 (ENSPNYG00000021047)	ENSPNYG00000021077	lrr1 (ENSPNYG00000021083)	ENSPNYG00000021095	ENSPNYG00000021117	grhl1 (ENSPNYG00000021143)	ywhaqb (ENSPNYG00000021165)	adam17a (ENSPNYG00000021186)	ENSPNYG00000021263 ##22	iah1 (ENSPNYG00000021313)	ENSPNYG00000021343	ltk (ENSPNYG00000021387)	itpka (ENSPNYG00000021427)	ivd (ENSPNYG00000021441)	ENSPNYG00000021472	PRLHR (ENSPNYG00000021484)	ccdc32 (ENSPNYG00000021493)	rpusd2 (ENSPNYG00000021507)	pcmtl (ENSPNYG00000021521)	disp2 (ENSPNYG00000021543)	ENSPNYG00000021566	eml1 (ENSPNYG00000021645)	evla (ENSPNYG00000021791)	degs2 (ENSPNYG00000021822)
P. nyererei	MODERN SPECIES	502										ENSPNYG00000016503	ENSPNYG00000016514	ENSPNYG00000016565	hand2 (ENSPNYG00000016583)	fbxo8 (ENSPNYG00000016608)	ENSPNYG00000016653	dctd (ENSPNYG00000016709) ##22	TENM3 (ENSPNYG00000016802)	ENSPNYG00000016907	ENSPNYG00000016919
Burton s mouthbrooder	DUPLICATION
Burton s mouthbrooder	MODERN SPECIES	285																ENSHBUG00000001515 ##22	iah1 (ENSHBUG00000001511)	ENSHBUG00000001505	ltk (ENSHBUG00000001495)	itpka (ENSHBUG00000001487)	ivd (ENSHBUG00000001476)	ENSHBUG00000023799	PRLHR (ENSHBUG00000023792)	rpusd2 (ENSHBUG00000023777)	disp2 (ENSHBUG00000023742)	ENSHBUG00000023684	ENSHBUG00000023479	ENSHBUG00000023456	ENSHBUG00000023443	degs2 (ENSHBUG00000023424)	YY1 (ENSHBUG00000023402)
Burton s mouthbrooder	MODERN SPECIES	862												ENSHBUG00000006669	ENSHBUG00000006700	hand2 (ENSHBUG00000006726)	fbxo8 (ENSHBUG00000006744)	dctd (ENSHBUG00000006782) ##22
Midas cichlid	DUPLICATION
Midas cichlid	MODERN SPECIES	504	rnf144aa (ENSACIG00000023614)	id2a (ENSACIG00000023623)	KIDINS220 (ENSACIG00000023634)	MBOAT2 (ENSACIG00000023644)	asap2a (ENSACIG00000023651)	itgb1bp1 (ENSACIG00000023656)	CPSF3 (ENSACIG00000023663)	ENSACIG00000023669	ENSACIG00000023673	lrr1 (ENSACIG00000023676)	dnaaf2 (ENSACIG00000023679)	klf11b (ENSACIG00000023687)	grhl1 (ENSACIG00000023709)	ywhaqb (ENSACIG00000023775)	adam17a (ENSACIG00000023988)	ENSACIG00000023993 ##22	iah1 (ENSACIG00000023998)	RPAP1 (ENSACIG00000024002)	ltk (ENSACIG00000024009)	itpka (ENSACIG00000024016)	ivd (ENSACIG00000024018)	ENSACIG00000024020	PRLHR (ENSACIG00000024022)	ccdc32 (ENSACIG00000024024)	pcmtl (ENSACIG00000024027)	rpusd2 (ENSACIG00000024029)	disp2 (ENSACIG00000024030)	ENSACIG00000024031	eml1 (ENSACIG00000024034)	ENSACIG00000024036	ENSACIG00000024037
Midas cichlid	MODERN SPECIES	69													hand2 (ENSACIG00000004179)	fbxo8 (ENSACIG00000004196)	ENSACIG00000004217	dctd (ENSACIG00000004235) ##22	TENM3 (ENSACIG00000004305)	ENSACIG00000004401
Pomacentridae	ANCESTRAL SPECIES	221													ENSGT00940000160772	ENSGT00940000158356	ENSGT00390000009873	ENSGT00940000153676.a ##22	ENSGT01030000234566.e.b.a.a.a.a	ENSGT01030000234566.e.b.a.a.b	ENSGT00940000156167.b	ENSGT00390000004697
Bicolor damselfish	MODERN SPECIES	1908													hand2 (ENSSPAG00000001112)	fbxo8 (ENSSPAG00000001076)	cep44 (ENSSPAG00000001036)	dctd (ENSSPAG00000001010) ##22
Pomacentridae_A	ANCESTRAL SPECIES	250													ENSGT00940000160772	ENSGT00940000158356	ENSGT00390000009873	ENSGT00940000153676.a ##22	ENSGT01030000234566.e.b.a.a.a.a	ENSGT00940000156167.b	ENSGT00390000004697
Amphiprion	ANCESTRAL SPECIES	93	ENSGT00940000155557.jc.b	ENSGT00530000063498.A	ENSGT00390000003512.r	ENSGT00940000156048.e.a.a.a.a	ENSGT00390000011529	ENSGT00730000111912.A.b	ENSGT01090000260226	ENSGT00940000153342.b	ENSGT00940000158966	ENSGT00940000177040	ENSGT00390000002789	ENSGT00530000067736	ENSGT00940000160772	ENSGT00940000158356	ENSGT00390000009873	ENSGT00940000153676.a ##22	ENSGT01030000234566.e.b.a.a.a.a	ENSGT00940000156167.b	ENSGT00390000004697	ENSGT01020000230338.a.b.b.a.a.b.a.a.a	ENSGT01100000263495.A.a.a	ENSGT00390000010980	ENSGT00390000013419	ENSGT00940000158105	ENSGT00940000165522.b	ENSGT00390000009223	ENSGT00940000177045.b.b
Orange clownfish	DUPLICATION
Orange clownfish	MODERN SPECIES	17	WIPF2 (ENSAPEG00000005487)	cdc6 (ENSAPEG00000005384)	cdc6 (ENSAPEG00000005339)	CCSAP (ENSAPEG00000005321)	ACTA1 (ENSAPEG00000005287)	nup133 (ENSAPEG00000005220)	ENSAPEG00000005183	ENSAPEG00000005156	taf5l (ENSAPEG00000005137)	capn9 (ENSAPEG00000005095)	ENSAPEG00000005070	ltv1 (ENSAPEG00000005031)	ENSAPEG00000004997	hand2 (ENSAPEG00000004952)	ENSAPEG00000004928	dctd (ENSAPEG00000004901) ##22	fbxo8 (ENSAPEG00000004845)	ENSAPEG00000004816	dctd (ENSAPEG00000004793) ##22	TENM3 (ENSAPEG00000004567)	ENSAPEG00000004485	ENSAPEG00000004475	vegfc (ENSAPEG00000004465)	ENSAPEG00000004453	ENSAPEG00000004442	ENSAPEG00000004427	zgc:153146 (ENSAPEG00000004404)	ENSAPEG00000004391	galnt7 (ENSAPEG00000004270)	ENSAPEG00000004204	spcs3 (ENSAPEG00000004172)
Orange clownfish	MODERN SPECIES	17	CCSAP (ENSAPEG00000005321)	ACTA1 (ENSAPEG00000005287)	nup133 (ENSAPEG00000005220)	ENSAPEG00000005183	ENSAPEG00000005156	taf5l (ENSAPEG00000005137)	capn9 (ENSAPEG00000005095)	ENSAPEG00000005070	ltv1 (ENSAPEG00000005031)	ENSAPEG00000004997	hand2 (ENSAPEG00000004952)	ENSAPEG00000004928	dctd (ENSAPEG00000004901) ##22	fbxo8 (ENSAPEG00000004845)	ENSAPEG00000004816	dctd (ENSAPEG00000004793) ##22	TENM3 (ENSAPEG00000004567)	ENSAPEG00000004485	ENSAPEG00000004475	vegfc (ENSAPEG00000004465)	ENSAPEG00000004453	ENSAPEG00000004442	ENSAPEG00000004427	zgc:153146 (ENSAPEG00000004404)	ENSAPEG00000004391	galnt7 (ENSAPEG00000004270)	ENSAPEG00000004204	spcs3 (ENSAPEG00000004172)	ENSAPEG00000004150	ENSAPEG00000004139	ENSAPEG00000004117
Clown anemonefish	MODERN SPECIES	764							ENSAOCG00000011736	taf5l (ENSAOCG00000011766)	capn9 (ENSAOCG00000011801)	ENSAOCG00000002332	ltv1 (ENSAOCG00000011907)	ENSAOCG00000011954	hand2 (ENSAOCG00000011989)	fbxo8 (ENSAOCG00000012018)	cep44 (ENSAOCG00000012043)	dctd (ENSAOCG00000012087) ##22
Spiny chromis	MODERN SPECIES	3077																dctd (ENSAPOG00000011666) ##22
Atherinomorphae	ANCESTRAL SPECIES	38			ENSGT01100000263491.a.b.a.a.a.b.a	ENSGT00950000183012.A.b	ENSGT00610000087490	ENSGT00510000052942	ENSGT01030000234627.a.b.a.a.b.a	ENSGT00940000155484.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00940000165522.b	ENSGT00940000158105	ENSGT00940000160772	ENSGT00940000158356	ENSGT00390000009873	ENSGT00940000153676.a ##22	ENSGT01030000234566.e.b.a.a.a.a	ENSGT00940000156167.b	ENSGT00390000004697	ENSGT00940000168028	ENSGT00940000165127.a	ENSGT00390000013973.A.a.c.b.a	ENSGT00390000008711.h	ENSGT01100000263483.E.b.b	ENSGT00940000157807.g.b	ENSGT00390000003751.a	ENSGT00940000156001.c	ENSGT00940000153576.c.a.a.b	ENSGT00940000165861	ENSGT00390000005096	ENSGT01020000230351.B.j.a
Oryzias	ANCESTRAL SPECIES	15	ENSGT00950000183035.b.f	ENSGT00940000163234.a.b.h.a.b	ENSGT00950000183130.A	ENSGT00950000182915.a.a.b	ENSGT00390000008828.fb.b	ENSGT00950000183201.b.a.b	ENSGT00870000137155	ENSGT00950000183174.B.a.e	ENSGT00940000157090.h	ENSGT00940000154953.b	ENSGT00940000155249.g	ENSGT00940000167646	ENSGT00940000177894	ENSGT00940000163186	ENSGT00940000157622.a.a	ENSGT00940000153676.a ##22	ENSGT01030000234566.e.b.a.a.a.a	ENSGT00940000156167.b	ENSGT00390000004697	ENSGT00940000153322.B.c	ENSGT00940000165823.d	ENSGT01040000240400.c.a.b.a.b.a.b	ENSGT00940000157122.b.b	ENSGT00940000155062.a	ENSGT00940000176858	ENSGT01030000234563.b.a.b.a.a.c.a	ENSGT01030000234563.b.a.b.a.b.a.d	ENSGT00940000156696.B	ENSGT00940000157732.f.a	ENSGT00390000000909	ENSGT00940000156184.a
Oryzias_a	ANCESTRAL SPECIES	31	ENSGT00390000000463.a	ENSGT00940000157338.a	ENSGT00950000183035.b.f	ENSGT00940000163234.a.b.h.a.b	ENSGT00950000183130.A	ENSGT00950000182915.a.a.b	ENSGT00390000008828.fb.b	ENSGT00950000183201.b.a.b	ENSGT00870000137155	ENSGT00950000183174.B.a.e	ENSGT00940000157090.h	ENSGT00940000154953.b	ENSGT00940000155249.g	ENSGT00940000163186	ENSGT00940000157622.a.a	ENSGT00940000153676.a ##22	ENSGT01030000234566.e.b.a.a.a.a	ENSGT00940000156167.b	ENSGT00390000004697	ENSGT00940000153322.B.c	ENSGT00940000165823.d	ENSGT01040000240400.c.a.b.a.b.a.b	ENSGT00940000157122.b.b	ENSGT00940000155062.a	ENSGT00940000176858	ENSGT01030000234563.b.a.b.a.a.c.a	ENSGT01030000234563.b.a.b.a.b.a.d	ENSGT00940000156696.B	ENSGT00940000157732.f.a	ENSGT00390000000909	ENSGT00940000156184.a
Chinese medaka	DUPLICATION
Chinese medaka	MODERN SPECIES	218	ccdc40 (ENSOSIG00000004515)	TEX2 (ENSOSIG00000004530)	AXIN2 (ENSOSIG00000004598)	ENSOSIG00000004600	slc47a2.1 (ENSOSIG00000004605)	exosc9 (ENSOSIG00000004619)	ENSOSIG00000004632	scoca (ENSOSIG00000005334)	ENSOSIG00000005335	naa15b (ENSOSIG00000005351)	RAB33B (ENSOSIG00000007092)	elf2b (ENSOSIG00000007093)	NOCT (ENSOSIG00000007097)	ENSOSIG00000007098	slc43a3a (ENSOSIG00000007099)	dctd (ENSOSIG00000007102) ##22	TENM3 (ENSOSIG00000007174)	ENSOSIG00000016828	vegfc (ENSOSIG00000016830)	ENSOSIG00000016832	ENSOSIG00000016837	ENSOSIG00000016840	ENSOSIG00000016841	ENSOSIG00000016843	RPS6KB2 (ENSOSIG00000016911)	ENSOSIG00000018609
Chinese medaka	MODERN SPECIES	2419																dctd (ENSOSIG00000001503) ##22
Japanese Medaka HdrR	MODERN SPECIES		ENSORLG00000001916	AXIN2 (ENSORLG00000001945)	ENSORLG00000025638	slc47a2.2 (ENSORLG00000001967)	exosc9 (ENSORLG00000001989)	clgn (ENSORLG00000002011)	scoca (ENSORLG00000002015)	ENSORLG00000028392	ENSORLG00000025469	naa15b (ENSORLG00000002063)	ENSORLG00000002071	elf2b (ENSORLG00000002091)	NOCT (ENSORLG00000002100)	ENSORLG00000023189	slc43a3a (ENSORLG00000002116)	dctd (ENSORLG00000002127) ##22	ENSORLG00000002165	vegfc (ENSORLG00000002180)	ENSORLG00000029382	ENSORLG00000002191	ENSORLG00000022778	ENSORLG00000002209	ENSORLG00000028979	ENSORLG00000002249	ENSORLG00000023252	RPS6KB2 (ENSORLG00000002272)	ENSORLG00000027842	ENSORLG00000026236	ENSORLG00000030303	ENSORLG00000029043	ENSORLG00000028680
Oryzias_b	ANCESTRAL SPECIES	34	ENSGT00950000183035.b.f	ENSGT00940000163234.a.b.h.a.b	ENSGT00950000183130.A	ENSGT00950000182915.a.a.b	ENSGT00390000008828.fb.b	ENSGT00950000183201.b.a.b	ENSGT00870000137155	ENSGT00950000183174.B.a.e	ENSGT00940000157090.h	ENSGT00940000154953.b	ENSGT00940000155249.g	ENSGT00940000167646	ENSGT00940000177894	ENSGT00940000163186	ENSGT00940000157622.a.a	ENSGT00940000153676.a ##22	ENSGT01030000234566.e.b.a.a.a.a	ENSGT00940000156167.b	ENSGT00390000004697	ENSGT00940000168028	ENSGT00940000165823.d	ENSGT01040000240400.c.a.b.a.b.a.b	ENSGT00940000157122.b.b	ENSGT00940000155062.a	ENSGT00940000176858	ENSGT01030000234563.b.a.b.a.a.c.a	ENSGT01030000234563.b.a.b.a.b.a.d	ENSGT00940000156696.B	ENSGT00940000157732.f.a	ENSGT00390000000909	ENSGT00940000156184.a
Indian medaka	MODERN SPECIES	21	ENSOMEG00000022104	ENSOMEG00000022070	slc47a2.1 (ENSOMEG00000022014)	exosc9 (ENSOMEG00000021965)	clgn (ENSOMEG00000021923)	scoca (ENSOMEG00000000577)	ENSOMEG00000021819	ENSOMEG00000021806	naa15b (ENSOMEG00000021786)	ENSOMEG00000021726	elf2b (ENSOMEG00000021691)	NOCT (ENSOMEG00000021625)	ENSOMEG00000021602	ENSOMEG00000021588	slc43a3a (ENSOMEG00000021570)	dctd (ENSOMEG00000021534) ##22	TENM3 (ENSOMEG00000021448)	ENSOMEG00000021371	vegfc (ENSOMEG00000021355)	ENSOMEG00000021322	ENSOMEG00000000562	ENSOMEG00000021246	ENSOMEG00000021220	ENSOMEG00000021212	RPS6KB2 (ENSOMEG00000021168)	ENSOMEG00000021107	ENSOMEG00000021072	ENSOMEG00000020906	neurl1aa (ENSOMEG00000020787)	SH3PXD2A (ENSOMEG00000020700)	slkb (ENSOMEG00000020542)
Javanese ricefish	MODERN SPECIES		AXIN2 (ENSOJAG00000006253)	ENSOJAG00000006241	slc47a2.2 (ENSOJAG00000006223)	exosc9 (ENSOJAG00000006174)	clgn (ENSOJAG00000004056)	scoca (ENSOJAG00000003640)	ENSOJAG00000022145	ENSOJAG00000022141	ENSOJAG00000022138	naa15b (ENSOJAG00000022103)	RAB33B (ENSOJAG00000022099)	elf2b (ENSOJAG00000022092)	NOCT (ENSOJAG00000022083)	ENSOJAG00000022075	ENSOJAG00000022066	dctd (ENSOJAG00000022053) ##22	atf1 (ENSOJAG00000022043)	TENM3 (ENSOJAG00000019297)	vegfc (ENSOJAG00000018818)	ENSOJAG00000018807	ENSOJAG00000018795	ENSOJAG00000018773	ENSOJAG00000018743	ENSOJAG00000018416	RPS6KB2 (ENSOJAG00000017187)	ENSOJAG00000017045	ENSOJAG00000016816	ENSOJAG00000016780	ENSOJAG00000016384	neurl1aa (ENSOJAG00000016314)	SH3PXD2A (ENSOJAG00000016104)
Cyprinodontiformes	ANCESTRAL SPECIES	38	ENSGT00510000052942	ENSGT01030000234627.a.b.a.a.b.a	ENSGT00940000155484.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00940000165522.b	ENSGT00940000158105	ENSGT00390000013419	ENSGT00940000156950.b	ENSGT00940000156344.a	ENSGT00390000003049.b.a	ENSGT00940000174164	ENSGT00940000160772	ENSGT00940000158356	ENSGT00390000009873	ENSGT00940000153676.a ##22	ENSGT01030000234566.e.b.a.a.a.a	ENSGT00940000156167.b	ENSGT00390000004697	ENSGT00940000168028	ENSGT00940000165127.a	ENSGT00390000013973.A.a.c.b.a	ENSGT00390000008711.h	ENSGT01100000263483.E.b.b	ENSGT00940000157807.g.b	ENSGT00390000003751.a	ENSGT00940000156001.c	ENSGT00940000153576.c.a.a.b	ENSGT00940000165861	ENSGT00390000005096	ENSGT01020000230351.B.j.a
Cyprinodontoidei	ANCESTRAL SPECIES	58	ENSGT01030000234627.a.b.a.a.b.a	ENSGT00940000155484.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00940000165522.b	ENSGT00940000158105	ENSGT00390000013419	ENSGT00940000156950.b	ENSGT00940000156344.a	ENSGT00390000003049.b.a	ENSGT00940000174164	ENSGT01050000244806.b.b	ENSGT00940000160772	ENSGT00940000158356	ENSGT00390000009873	ENSGT00940000153676.a ##22	ENSGT01030000234566.e.b.a.a.a.a	ENSGT00940000156167.b	ENSGT00390000004697	ENSGT00940000168028	ENSGT00940000165127.a	ENSGT00390000013973.A.a.c.b.a	ENSGT00390000008711.h	ENSGT01100000263483.E.b.b.cb.b	ENSGT00940000157807.g.b	ENSGT00390000003751.a	ENSGT00940000156001.c	ENSGT00940000153576.c.a.a.b	ENSGT00940000165861	ENSGT00390000005096	ENSGT01020000230351.B.j.a
NAME_4	ANCESTRAL SPECIES	236	ENSGT00510000052942	ENSGT01030000234627.a.b.a.a.b.a	ENSGT00940000155484.b	ENSGT00390000009223	ENSGT00940000165522.b	ENSGT00940000158105	ENSGT00390000013419	ENSGT00940000156950.b	ENSGT00940000156344.a	ENSGT00390000003049.b.a	ENSGT00940000174164	ENSGT01050000244806.b.b	ENSGT00940000160772	ENSGT00940000158356	ENSGT00390000009873	ENSGT00940000153676.a ##22	ENSGT01030000234566.e.b.a.a.a.a
Sheepshead minnow	MODERN SPECIES	335											ENSCVAG00000018352	ENSCVAG00000018339	ENSCVAG00000000478	hand2 (ENSCVAG00000018299)	fbxo8 (ENSCVAG00000018289)	dctd (ENSCVAG00000018241) ##22	TENM3 (ENSCVAG00000018202)
Poeciliinae	ANCESTRAL SPECIES	9	ENSGT00510000052942	ENSGT01030000234627.a.b.a.a.b.a	ENSGT00940000155484.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00940000158105	ENSGT00390000013419	ENSGT00940000156950.b	ENSGT00940000156344.a	ENSGT00390000003049.b.a	ENSGT00940000174164	ENSGT01050000244806.b.b	ENSGT00940000160772	ENSGT00940000158356	ENSGT00390000009873	ENSGT00940000153676.a ##22	ENSGT01030000234566.e.b.a.a.a.a.e	ENSGT00940000156167.b	ENSGT00390000004697	ENSGT00940000168028	ENSGT00940000165127.a	ENSGT00390000013973.A.a.c.b.a	ENSGT00390000008711.h	ENSGT01100000263483.E.b.b.cb.b	ENSGT00940000157807.g.b	ENSGT00390000003751.a	ENSGT00940000156001.c	ENSGT00940000153576.c.a.a.b	ENSGT00940000165861	ENSGT00390000005096	ENSGT01020000230351.B.j.a
Platyfish	MODERN SPECIES	19	ENSXMAG00000016005	stx3a (ENSXMAG00000028936)	kdm2aa (ENSXMAG00000015985)	spcs3 (ENSXMAG00000015996)	ASB5 (ENSXMAG00000015975)	galnt7 (ENSXMAG00000015957)	saraf (ENSXMAG00000015951)	GRIA2 (ENSXMAG00000015901)	glrba (ENSXMAG00000015884)	ndufs8a (ENSXMAG00000015877)	ENSXMAG00000015875	si:dkey-102c8.3 (ENSXMAG00000015872)	hand2 (ENSXMAG00000023432)	fbxo8 (ENSXMAG00000017544)	cep44 (ENSXMAG00000017542)	dctd (ENSXMAG00000015859) ##22	ENSXMAG00000021802	TENM3 (ENSXMAG00000015765)	vegfc (ENSXMAG00000011488)	ENSXMAG00000011494	ENSXMAG00000028168	ENSXMAG00000013687	ENSXMAG00000013701	ENSXMAG00000023872	ENSXMAG00000021497	ENSXMAG00000013714	tmx2b (ENSXMAG00000013723)	zdhhc5a (ENSXMAG00000013732)	slc43a1b (ENSXMAG00000013740)	ENSXMAG00000013750	pold4 (ENSXMAG00000013767)
Poecilia	ANCESTRAL SPECIES	64	ENSGT00510000052942	ENSGT01030000234627.a.b.a.a.b.a	ENSGT00940000155484.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00940000158105	ENSGT00390000013419	ENSGT00940000156950.b	ENSGT00940000156344.a	ENSGT00390000003049.b.a	ENSGT00940000174164	ENSGT01050000244806.b.b	ENSGT00940000160772	ENSGT00940000158356	ENSGT00390000009873	ENSGT00940000153676.a ##22	ENSGT01030000234566.e.b.a.a.a.a.e	ENSGT00940000156167.b	ENSGT00390000004697	ENSGT00940000153322.B.c	ENSGT01030000234893.b.a.a.b.b.a	ENSGT00940000165127.a	ENSGT00390000013973.A.a.c.b.a	ENSGT00390000008711.h	ENSGT01100000263483.E.b.b.cb.b	ENSGT00940000157807.g.b	ENSGT00390000003751.a	ENSGT00940000156001.c	ENSGT00940000153576.c.a.a.b	ENSGT00940000165861	ENSGT00390000005096
Guppy	MODERN SPECIES	439	vps37c (ENSPREG00000021926)	ENSPREG00000021934	stx3a (ENSPREG00000021940)	kdm2aa (ENSPREG00000021962)	spcs3 (ENSPREG00000021991)	ENSPREG00000021996	galnt7 (ENSPREG00000022007)	ENSPREG00000022021	GRIA2 (ENSPREG00000022050)	glrba (ENSPREG00000022117)	ndufs8a (ENSPREG00000022139)	ENSPREG00000022154	ENSPREG00000022169	hand2 (ENSPREG00000022192)	fbxo8 (ENSPREG00000022197)	dctd (ENSPREG00000022221) ##22	TENM3 (ENSPREG00000022337)	vegfc (ENSPREG00000022543)	ENSPREG00000022551	ENSPREG00000022558	ENSPREG00000022575	ENSPREG00000022585	ENSPREG00000022591	ENSPREG00000022596	ENSPREG00000022603	ENSPREG00000022610	ENSPREG00000022613	ENSPREG00000022617	tmx2b (ENSPREG00000022631)	zdhhc5a (ENSPREG00000022645)	slc43a1b (ENSPREG00000022651)
NAME_6	ANCESTRAL SPECIES	78	ENSGT01030000234627.a.b.a.a.b.a	ENSGT00940000155484.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00940000158105	ENSGT00390000013419	ENSGT00940000156950.b	ENSGT00940000156344.a	ENSGT00390000003049.b.a	ENSGT00940000174164	ENSGT01050000244806.b.b	ENSGT00940000160772	ENSGT00940000158356	ENSGT00390000009873.h	ENSGT00390000009873.g	ENSGT00940000153676.a ##22	ENSGT01030000234566.e.b.a.a.a.a.e	ENSGT00940000156167.b	ENSGT00390000004697	ENSGT00940000168028	ENSGT01030000234893.b.a.a.b.b.a	ENSGT00940000165127.a	ENSGT00390000013973.A.a.c.b.a	ENSGT00390000008711.h	ENSGT01100000263483.E.b.b.cb.b	ENSGT00940000157807.g.b	ENSGT00390000003751.a	ENSGT00940000156001.c	ENSGT00940000153576.c.a.a.b	ENSGT00940000165861	ENSGT00390000005096
Amazon molly	MODERN SPECIES	414									GRIA2 (ENSPFOG00000008549)	glrba (ENSPFOG00000009313)	ndufs8a (ENSPFOG00000009410)	ENSPFOG00000009530	hand2 (ENSPFOG00000009546)	fbxo8 (ENSPFOG00000009550)	ENSPFOG00000009625	dctd (ENSPFOG00000010583) ##22	ENSPFOG00000023938	ENSPFOG00000021807	TENM3 (ENSPFOG00000009694)	vegfc (ENSPFOG00000010660)	ENSPFOG00000010705	ENSPFOG00000022568	ENSPFOG00000010729	ENSPFOG00000010740	ENSPFOG00000010787	ENSPFOG00000010818	ENSPFOG00000010867	ENSPFOG00000010874	tmx2b (ENSPFOG00000010938)	zdhhc5a (ENSPFOG00000010983)	slc43a1b (ENSPFOG00000010986)
Sailfin molly	DUPLICATION
Sailfin molly	DUPLICATION
Sailfin molly	MODERN SPECIES	776														ENSPLAG00000022749	ENSPLAG00000022729	dctd (ENSPLAG00000022699) ##22	TENM3 (ENSPLAG00000022673)
Sailfin molly	MODERN SPECIES	2905																dctd (ENSPLAG00000021568) ##22	ENSPLAG00000021424
Sailfin molly	MODERN SPECIES	656		stx3a (ENSPLAG00000005336)	kdm2aa (ENSPLAG00000005080)	spcs3 (ENSPLAG00000004971)	ENSPLAG00000004945	galnt7 (ENSPLAG00000004909)	ENSPLAG00000000779	GRIA2 (ENSPLAG00000004841)	glrba (ENSPLAG00000004805)	ndufs8a (ENSPLAG00000000763)	ENSPLAG00000004764	ENSPLAG00000004754	hand2 (ENSPLAG00000004744)	fbxo8 (ENSPLAG00000004737)	ENSPLAG00000004725	DCTD (ENSPLAG00000004700) ##22
Aplocheiloidei	ANCESTRAL SPECIES	459																ENSGT00940000153676.a ##22	ENSGT01030000234566.e.b.a.a.a.a
Turquoise killifish	MODERN SPECIES	1617	vps54 (ENSNFUG00015023231)	ugp2a (ENSNFUG00015023325)	MDH1 (ENSNFUG00015023534)	otx2a (ENSNFUG00015023572)	ENSNFUG00015023575	ENSNFUG00015023583	COMMD1 (ENSNFUG00015023593)	capn9 (ENSNFUG00015023606)	TAF5L (ENSNFUG00015023630)	rcor3 (ENSNFUG00015023643)	ENSNFUG00015023678	KCNH1 (ENSNFUG00015023684)	FBXO8 (ENSNFUG00015023694)	ENSNFUG00015023698	ENSNFUG00015023701	dctd (ENSNFUG00015023704) ##22	ENSNFUG00015023717	ENSNFUG00015023825	ENSNFUG00015023826	vegfc (ENSNFUG00015023829)	ENSNFUG00015023837	ENSNFUG00015023858	map2k7 (ENSNFUG00015023878)	myh9a (ENSNFUG00015009053)	slc25a38b (ENSNFUG00015009527)	ENSNFUG00015009632	ENSNFUG00015009653	ENSNFUG00015009658	ttc26 (ENSNFUG00015009736)	ubn2a (ENSNFUG00015010270)	ENSNFUG00015010308
Mangrove rivulus	DUPLICATION
Mangrove rivulus	MODERN SPECIES	131												snupn (ENSKMAG00000009957)	snx33 (ENSKMAG00000009972)	CSPG4 (ENSKMAG00000009982)	LINGO1 (ENSKMAG00000010002)	ENSKMAG00000010025 ##22	hmg20a (ENSKMAG00000010066)	ENSKMAG00000010079	PEAK1 (ENSKMAG00000010101)	syt12 (ENSKMAG00000010138)	cat (ENSKMAG00000010181)	ENSKMAG00000010246	ENSKMAG00000010254	ENSKMAG00000010269	ENSKMAG00000010285	ENSKMAG00000010297	ENSKMAG00000010307
Mangrove rivulus	MODERN SPECIES	167													ENSKMAG00000011434	fbxo8 (ENSKMAG00000011457)	ENSKMAG00000011483	dctd (ENSKMAG00000011509) ##22	TENM3 (ENSKMAG00000011731)	ENSKMAG00000012348
Cod	DUPLICATION
Cod	MODERN SPECIES	16	ENSGMOG00000019021	ENSGMOG00000019006	ENSGMOG00000018985	hand2 (ENSGMOG00000033700)	fbxo8 (ENSGMOG00000001920)	ENSGMOG00000030231	cep44 (ENSGMOG00000001932)	hpgd (ENSGMOG00000001937)	glra3 (ENSGMOG00000005468)	ENSGMOG00000016486	ENSGMOG00000007088	ENSGMOG00000026931	ENSGMOG00000024328	ENSGMOG00000004927	ENSGMOG00000004905	ENSGMOG00000004894 ##22	ENSGMOG00000004795	ENSGMOG00000029049	ENSGMOG00000022571	ENSGMOG00000016705	ENSGMOG00000003175	ENSGMOG00000033515	ENSGMOG00000022623	ENSGMOG00000037207	ENSGMOG00000036124	ENSGMOG00000033772	ENSGMOG00000027315	ENSGMOG00000029127	ENSGMOG00000035318	ENSGMOG00000022234	ENSGMOG00000031520
Cod	MODERN SPECIES		ENSGMOG00000002321	tmem115 (ENSGMOG00000002381)	ENSGMOG00000029834	sema3h (ENSGMOG00000002408)	borcs6 (ENSGMOG00000024796)	ENSGMOG00000013442	xpc (ENSGMOG00000019246)	arih2 (ENSGMOG00000019261)	impdh2 (ENSGMOG00000019271)	ENSGMOG00000035142	ENSGMOG00000036243	dalrd3 (ENSGMOG00000019281)	ENSGMOG00000019289	ENSGMOG00000031204	ENSGMOG00000024405	ENSGMOG00000017217 ##22	ENSGMOG00000024645	ENSGMOG00000002136	mgll (ENSGMOG00000010155)	prkar2aa (ENSGMOG00000006219)	ENSGMOG00000022352	amt (ENSGMOG00000010486)	ifrd2 (ENSGMOG00000010497)	ENSGMOG00000035429	zgc:136971 (ENSGMOG00000010511)	ENSGMOG00000031202	ENSGMOG00000037217	ENSGMOG00000016094	ENSGMOG00000016077	ENSGMOG00000028900	ENSGMOG00000016038
Otomorpha	ANCESTRAL SPECIES	57															ENSGT00410000025556.a.a.a.b	ENSGT00940000153676.a ##22	ENSGT01030000234566.e.b.a.a.a.a	ENSGT01030000234566.e.b.a.a.b	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000165059.A	ENSGT00940000158602	ENSGT00390000006915.d.i	ENSGT01080000257376.a.b.a.a	ENSGT00390000006915.d.j.a	ENSGT00940000158368	ENSGT00940000154593.a.b	ENSGT00390000009873	ENSGT00940000158356	ENSGT00940000160772	ENSGT00390000009191
Otophysi	ANCESTRAL SPECIES	79						ENSGT00940000156393.a.b	ENSGT00520000058756	ENSGT00540000073610.A	ENSGT00980000198603.B	ENSGT00940000160334	ENSGT00390000001289.a	ENSGT00940000158194	ENSGT00520000055589.d.a.b	ENSGT00390000011766	ENSGT00940000159063.f	ENSGT00940000153676.a ##22	ENSGT01030000234566.e.b.a.a.a.a	ENSGT01030000234566.e.b.a.a.b	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000165059.A	ENSGT00940000158602	ENSGT00390000006915.d.i	ENSGT01080000257376.a.b.a.a	ENSGT00390000006915.d.j.a	ENSGT00940000158368	ENSGT00940000154593.a.b	ENSGT00390000009873	ENSGT00940000158356	ENSGT00940000160772	ENSGT00390000009191
Characiphysae	ANCESTRAL SPECIES	9	ENSGT00940000157887	ENSGT00390000008798.c	ENSGT00940000155140.t	ENSGT00940000156393.a.b	ENSGT00520000058756	ENSGT00540000073610.A	ENSGT00980000198603.B	ENSGT00390000015958.c	ENSGT00940000157294.c	ENSGT00940000160334	ENSGT00390000001289.a	ENSGT00940000158194	ENSGT00520000055589.d.a.b	ENSGT00390000011766	ENSGT00940000159063.f	ENSGT00940000153676.a ##22	ENSGT01030000234566.e.b.a.a.a.a	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000165059.A	ENSGT00940000158602	ENSGT00390000006915.d.j.a	ENSGT00940000158368	ENSGT00940000154593.a.b	ENSGT00390000009873	ENSGT00940000158356	ENSGT00940000160772	ENSGT00390000009191	ENSGT00940000154466.cc	ENSGT00940000158105	ENSGT00940000155038
Channel catfish	DUPLICATION
Channel catfish	MODERN SPECIES	22	ENSIPUG00000002271	ENSIPUG00000002279	ENSIPUG00000002287	ENSIPUG00000002292	pdcd4a (ENSIPUG00000002299)	ENSIPUG00000002324	ccdc149b (ENSIPUG00000002331)	lgi2b (ENSIPUG00000002354)	cdk2ap2 (ENSIPUG00000002396)	aip (ENSIPUG00000002402)	SOD3 (ENSIPUG00000002419)	ing2 (ENSIPUG00000002434)	stox2 (ENSIPUG00000002443)	tmem134 (ENSIPUG00000002462)	irf2a (ENSIPUG00000002472)	Dctd (ENSIPUG00000002486) ##22	ENSIPUG00000002498 ##22	TENM3 (ENSIPUG00000002505)	ENSIPUG00000002575	VEGFC (ENSIPUG00000002582)	SPCS3 (ENSIPUG00000002609)	tapbp (ENSIPUG00000002618)	asb5 (ENSIPUG00000002631)	wdr17 (ENSIPUG00000002658)	ENSIPUG00000002687	ENSIPUG00000002694	ENSIPUG00000002705	ENSIPUG00000002708	ENSIPUG00000002719	ENSIPUG00000002724	ENSIPUG00000002735
Channel catfish	MODERN SPECIES	22	ENSIPUG00000002279	ENSIPUG00000002287	ENSIPUG00000002292	pdcd4a (ENSIPUG00000002299)	ENSIPUG00000002324	ccdc149b (ENSIPUG00000002331)	lgi2b (ENSIPUG00000002354)	cdk2ap2 (ENSIPUG00000002396)	aip (ENSIPUG00000002402)	SOD3 (ENSIPUG00000002419)	ing2 (ENSIPUG00000002434)	stox2 (ENSIPUG00000002443)	tmem134 (ENSIPUG00000002462)	irf2a (ENSIPUG00000002472)	Dctd (ENSIPUG00000002486) ##22	ENSIPUG00000002498 ##22	TENM3 (ENSIPUG00000002505)	ENSIPUG00000002575	VEGFC (ENSIPUG00000002582)	SPCS3 (ENSIPUG00000002609)	tapbp (ENSIPUG00000002618)	asb5 (ENSIPUG00000002631)	wdr17 (ENSIPUG00000002658)	ENSIPUG00000002687	ENSIPUG00000002694	ENSIPUG00000002705	ENSIPUG00000002708	ENSIPUG00000002719	ENSIPUG00000002724	ENSIPUG00000002735	ENSIPUG00000002740
Characiphysae_b	ANCESTRAL SPECIES	76													ENSGT00520000055589.d.a.b	ENSGT00390000011766	ENSGT00940000159063.f	ENSGT00940000153676.a ##22	ENSGT01030000234566.e.b.a.a.a.a	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000165059.A	ENSGT00940000158602	ENSGT00390000006915.d.j.a	ENSGT00940000158368	ENSGT00940000154593.a.b	ENSGT00390000009873	ENSGT00940000158356	ENSGT00940000160772	ENSGT00390000009191	ENSGT00940000154466.cc	ENSGT00940000158105	ENSGT00940000155038
Characoidei	ANCESTRAL SPECIES	334													ENSGT00520000055589.d.a.b	ENSGT00390000011766	ENSGT00940000159063.f	ENSGT00940000153676.a ##22	ENSGT01030000234566.e.b.a.a.a.a	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000165059.A	ENSGT00940000158602
Red-bellied piranha	MODERN SPECIES	148				ccdc149b (ENSPNAG00000013818)	ENSPNAG00000005080	cntf (ENSPNAG00000013789)	ENSPNAG00000013782	ENSPNAG00000002937	CASP6 (ENSPNAG00000002925)	pla2g12a (ENSPNAG00000002908)	ENSPNAG00000002898	dnajb14 (ENSPNAG00000002897)	STOX2 (ENSPNAG00000013674)	tmem134 (ENSPNAG00000013649)	irf2a (ENSPNAG00000013591)	dctd (ENSPNAG00000013575) ##22	ENSPNAG00000002794	ENSPNAG00000002786	TENM3 (ENSPNAG00000013487)	vegfc (ENSPNAG00000013302)	spcs3 (ENSPNAG00000013292)	asb5b (ENSPNAG00000013273)	wdr17 (ENSPNAG00000013253)
Mexicana tetra	MODERN SPECIES	112													STOX2 (ENSAMXG00000000664)	tmem134 (ENSAMXG00000036971)	irf2a (ENSAMXG00000043646)	dctd (ENSAMXG00000035628) ##22	ENSAMXG00000021222	tenm3 (ENSAMXG00000042335)
Electric eel	DUPLICATION
Electric eel	MODERN SPECIES	295														ENSEEEG00000009143	dctd (ENSEEEG00000009144) ##22	ENSEEEG00000009148 ##22	dnajb14 (ENSEEEG00000009154)	brca2 (ENSEEEG00000009157)	ENSEEEG00000009161	arfip2a (ENSEEEG00000009165)	TRIM3 (ENSEEEG00000009171)	ENSEEEG00000009176	frem2b (ENSEEEG00000009184)	trpc4b (ENSEEEG00000009186)	postnb (ENSEEEG00000009187)	spartb (ENSEEEG00000009192)	dclk1b (ENSEEEG00000009198)	NBEA (ENSEEEG00000009274)	mab21l1 (ENSEEEG00000009278)
Electric eel	MODERN SPECIES	295		mab21l1 (ENSEEEG00000009278)	NBEA (ENSEEEG00000009274)	dclk1b (ENSEEEG00000009198)	spartb (ENSEEEG00000009192)	postnb (ENSEEEG00000009187)	trpc4b (ENSEEEG00000009186)	frem2b (ENSEEEG00000009184)	ENSEEEG00000009176	TRIM3 (ENSEEEG00000009171)	arfip2a (ENSEEEG00000009165)	ENSEEEG00000009161	brca2 (ENSEEEG00000009157)	dnajb14 (ENSEEEG00000009154)	ENSEEEG00000009148 ##22	dctd (ENSEEEG00000009144) ##22	ENSEEEG00000009143
Cyprinoidei	ANCESTRAL SPECIES	22	ENSGT00940000157807.g.b	ENSGT01100000263483.F.a.eb	ENSGT01100000263483.E.b.a.c.a.a	ENSGT01100000263483.E.b.a.c.b.a.b	ENSGT01100000263483.E.b.a.c.b.a.a	ENSGT00940000156393.a.b.c	ENSGT00520000058756	ENSGT00540000073610.A	ENSGT00980000198603.B	ENSGT00940000160334	ENSGT00390000001289.a	ENSGT00940000158194	ENSGT00520000055589.d.a.b	ENSGT00390000011766	ENSGT00940000159063.f	ENSGT00940000153676.a ##22	ENSGT01030000234566.e.b.a.a.a.a	ENSGT01030000234566.e.b.a.a.b	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000165059.A	ENSGT00940000158602	ENSGT00390000006915.d.i	ENSGT01080000257376.a.b.a.a	ENSGT00940000158368	ENSGT00940000154593.a.b	ENSGT00390000009873	ENSGT00940000158356	ENSGT00940000160772	ENSGT00940000154466.cc	ENSGT00940000158105
Zebrafish	MODERN SPECIES		zgc:194443 (ENSDARG00000078182)	zgc:152658 (ENSDARG00000018587)	ENSDARG00000079631	ENSDARG00000076585	cntf (ENSDARG00000074662)	ENSDARG00000093120	ccdc149b (ENSDARG00000020857)	lgi2b (ENSDARG00000069701)	cdk2ap2 (ENSDARG00000103145)	aip (ENSDARG00000104437)	SOD3 (ENSDARG00000079183)	ing2 (ENSDARG00000104907)	STOX2 (ENSDARG00000070162)	tmem134 (ENSDARG00000024828)	irf2a (ENSDARG00000007387)	dctd (ENSDARG00000036990) ##22	tenm3 (ENSDARG00000005479)	ENSDARG00000104657	vegfc (ENSDARG00000069640)	spcs3 (ENSDARG00000089976)	asb5b (ENSDARG00000053222)	wdr17 (ENSDARG00000075098)	gpm6ab (ENSDARG00000004621)	glra3 (ENSDARG00000011066)	hpgd (ENSDARG00000012016)	cep44 (ENSDARG00000053106)	fbxo8 (ENSDARG00000007477)	hand2 (ENSDARG00000008305)	hmgb2a (ENSDARG00000029722)	ENSDARG00000113575	galnt7 (ENSDARG00000057303)
Cyprininae	ANCESTRAL SPECIES	164	ENSGT01100000263483.E.b.a.c.b.a.a.a.a.a	ENSGT00940000156393.a.b.c.a	ENSGT00520000058756	ENSGT00940000156393.a.b.d	ENSGT00540000073610.A.b	ENSGT00980000198603.B	ENSGT00390000015958.c.b	ENSGT00940000157294.c.a	ENSGT00940000160334.o	ENSGT00390000001289.a.e	ENSGT00940000162224.h	ENSGT00940000158194.i.a	ENSGT00520000055589.d.a.b.a	ENSGT00390000011766.g	ENSGT00940000159063.f.a.b	ENSGT00940000153676.a ##22	ENSGT01030000234566.e.b.a.a.a.a.m	ENSGT01030000234566.e.b.a.a.b	ENSGT00940000156167.b.a	ENSGT00390000009223.rb	ENSGT00940000165059.A.a	ENSGT00940000158602.i	ENSGT00390000006915.d.i.a	ENSGT01080000257376.a.b.a.a	ENSGT00940000158368.c	ENSGT00940000154593.a.b.j	ENSGT00390000009873.l	ENSGT00940000158356.l	ENSGT00940000160772.h	ENSGT00940000154466.cc.a	ENSGT00940000158105.l
Goldfish	DUPLICATION
Goldfish	MODERN SPECIES	277	ENSCARG00000044849	ENSCARG00000044862	ENSCARG00000044869	ENSCARG00000044891	ENSCARG00000044914	cntf (ENSCARG00000044968)	ccdc149b (ENSCARG00000045020)	lgi2b (ENSCARG00000045315)	cdk2ap2 (ENSCARG00000045363)	aip (ENSCARG00000045389)	SOD3 (ENSCARG00000045423)	ing2 (ENSCARG00000045436)	ENSCARG00000045456	irf2a (ENSCARG00000045479)	tmem134 (ENSCARG00000045521)	dctd (ENSCARG00000045635) ##22	ENSCARG00000046010	vegfc (ENSCARG00000048535)	ENSCARG00000048565	spcs3 (ENSCARG00000048575)	ENSCARG00000048603	asb5b (ENSCARG00000018865)	wdr17 (ENSCARG00000018888)	gpm6ab (ENSCARG00000018978)	glra3 (ENSCARG00000019237)	ENSCARG00000019464	hpgd (ENSCARG00000019468)	cep44 (ENSCARG00000019483)	fbxo8 (ENSCARG00000019500)	hand2 (ENSCARG00000019511)	hmgb2a (ENSCARG00000019517)
Goldfish	MODERN SPECIES		zgc:56493 (ENSCARG00000017066)	faah2a (ENSCARG00000017083)	TESK1 (ENSCARG00000017202)	ENSCARG00000017266	ENSCARG00000017270	ENSCARG00000017279	ENSCARG00000017294	cntf (ENSCARG00000017305)	cdk2ap2 (ENSCARG00000017310)	aip (ENSCARG00000017321)	ENSCARG00000017339	ing2 (ENSCARG00000017344)	ENSCARG00000017352	tmem134 (ENSCARG00000017366)	irf2a (ENSCARG00000017380)	dctd (ENSCARG00000017400) ##22	ENSCARG00000017526	ENSCARG00000018117	gart (ENSCARG00000018148)	n6amt1 (ENSCARG00000018190)	ADAMTS1 (ENSCARG00000018207)	ENSCARG00000018275	cyyr1 (ENSCARG00000018279)	APP (ENSCARG00000018902)	jam2a (ENSCARG00000024905)	atp5pf (ENSCARG00000024935)	mrpl39 (ENSCARG00000024975)	ENSCARG00000025035	ENSCARG00000025039	si:ch73-41e3.7 (ENSCARG00000025041)	txnl4b (ENSCARG00000025052)
Cyprininae_a	ANCESTRAL SPECIES	157	ENSGT01100000263483.E.b.a.c.b.a.a.a.a.a	ENSGT00940000156393.a.b.c.a	ENSGT00520000058756	ENSGT00940000156393.a.b.d	ENSGT00540000073610.A.b	ENSGT00980000198603.B	ENSGT00390000015958.c.b	ENSGT00940000157294.c.a	ENSGT00940000160334.o	ENSGT00390000001289.a.e	ENSGT00940000162224.h	ENSGT00940000158194.i.a	ENSGT00520000055589.d.a.b.a	ENSGT00390000011766.g	ENSGT00940000159063.f.a.b	ENSGT00940000153676.a ##22	ENSGT01030000234566.e.b.a.a.a.a.m	ENSGT01030000234566.e.b.a.a.b	ENSGT00940000156167.b.a	ENSGT00390000009223.rb	ENSGT00940000165059.A.a	ENSGT00940000158602.i	ENSGT00390000006915.d.i.a	ENSGT01080000257376.a.b.a.a	ENSGT00940000158368.c	ENSGT00940000154593.a.b.j	ENSGT00390000009873.l	ENSGT00940000158356.l	ENSGT00940000160772.h	ENSGT00940000154466.cc.a	ENSGT00940000158105.l
Golden-line barbel	DUPLICATION
Golden-line barbel	MODERN SPECIES	16	ENSSGRG00000036254	ENSSGRG00000036253	ENSSGRG00000036252	ENSSGRG00000036251	ENSSGRG00000036249	cntf (ENSSGRG00000036247)	ccdc149b (ENSSGRG00000036241)	lgi2b (ENSSGRG00000036237)	cdk2ap2 (ENSSGRG00000036234)	aip (ENSSGRG00000036230)	SOD3 (ENSSGRG00000036227)	ing2 (ENSSGRG00000036225)	STOX2 (ENSSGRG00000036224)	tmem134 (ENSSGRG00000036223)	irf2a (ENSSGRG00000036222)	dctd (ENSSGRG00000036221) ##22	TENM3 (ENSSGRG00000033560)	ENSSGRG00000033531	vegfc (ENSSGRG00000033530)	spcs3 (ENSSGRG00000033525)	asb5b (ENSSGRG00000033524)	wdr17 (ENSSGRG00000032964)	gpm6ab (ENSSGRG00000032955)	glra3 (ENSSGRG00000032951)	hpgd (ENSSGRG00000032943)	cep44 (ENSSGRG00000032942)	hand2 (ENSSGRG00000032940)	hmgb2a (ENSSGRG00000032939)	galnt7 (ENSSGRG00000032938)	galntl6 (ENSSGRG00000032937)	sparcl1 (ENSSGRG00000032936)
Golden-line barbel	MODERN SPECIES	691	ENSSGRG00000051339	ENSSGRG00000051340	ENSSGRG00000051341	ENSSGRG00000051342	ENSSGRG00000051343	cntf (ENSSGRG00000051344)	ccdc149b (ENSSGRG00000051346)	lgi2b (ENSSGRG00000051347)	ENSSGRG00000051348	cdk2ap2 (ENSSGRG00000051349)	aip (ENSSGRG00000051350)	STOX2 (ENSSGRG00000051351)	tmem134 (ENSSGRG00000051353)	irf2a (ENSSGRG00000051354)	irf2a (ENSSGRG00000051355)	dctd (ENSSGRG00000051356) ##22	TENM3 (ENSSGRG00000051410)
Common carp reference	DUPLICATION
Common carp reference	MODERN SPECIES	22	faah2a (ENSCCRG00000058192)	ENSCCRG00000023502	ENSCCRG00000023521	ENSCCRG00000056721	ENSCCRG00000073840	ENSCCRG00000077796	ENSCCRG00000056872	cntf (ENSCCRG00000059766)	ccdc149b (ENSCCRG00000051983)	lgi2b (ENSCCRG00000051972)	cdk2ap2 (ENSCCRG00000051969)	aip (ENSCCRG00000048177)	ENSCCRG00000051978	tmem134 (ENSCCRG00000045301)	ENSCCRG00000064446	dctd (ENSCCRG00000045283) ##22	ENSCCRG00000045275	vegfc (ENSCCRG00000000931)	spcs3 (ENSCCRG00000031218)	asb5b (ENSCCRG00000061922)	wdr17 (ENSCCRG00000031233)	gpm6ab (ENSCCRG00000074115)	ENSCCRG00000079948	glra3 (ENSCCRG00000050387)	fbxo8 (ENSCCRG00000069917)	cep44 (ENSCCRG00000001108)	hand2 (ENSCCRG00000002702)	hmgb2a (ENSCCRG00000060705)	galnt7 (ENSCCRG00000040431)	galntl6 (ENSCCRG00000041366)	sparcl1 (ENSCCRG00000016120)
Common carp reference	MODERN SPECIES	27	ENSCCRG00000025732	ENSCCRG00000054934	ENSCCRG00000057879	ENSCCRG00000077428	cntf (ENSCCRG00000025703)	ENSCCRG00000067650	ccdc149b (ENSCCRG00000051986)	lgi2b (ENSCCRG00000054335)	aip (ENSCCRG00000051967)	cdk2ap2 (ENSCCRG00000064036)	ing2 (ENSCCRG00000005204)	ENSCCRG00000081924	ENSCCRG00000051974	tmem134 (ENSCCRG00000081609)	irf2a (ENSCCRG00000076801)	ENSCCRG00000045193 ##22	ENSCCRG00000041144	tenm3 (ENSCCRG00000059959)	vegfc (ENSCCRG00000075544)	spcs3 (ENSCCRG00000032030)	asb5b (ENSCCRG00000058956)	wdr17 (ENSCCRG00000031139)	gpm6ab (ENSCCRG00000024308)	ENSCCRG00000058509	glra3 (ENSCCRG00000049689)	hpgd (ENSCCRG00000061983)	fbxo8 (ENSCCRG00000065697)	cep44 (ENSCCRG00000002666)	hand2 (ENSCCRG00000040398)	hmgb2a (ENSCCRG00000079039)	galnt7 (ENSCCRG00000002736)
Clupeiformes	ANCESTRAL SPECIES	22	ENSGT00940000155249.g	ENSGT00940000154953.b	ENSGT00940000157090.h	ENSGT00950000183174.B.a.e	ENSGT00870000137155	ENSGT00950000183201.b.a.b	ENSGT00390000008828.fb.b	ENSGT00950000182915.a.a.b	ENSGT00530000063669.a	ENSGT00390000013015	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00940000157580.a.b	ENSGT00410000025556.a.a.a.b.a	ENSGT00940000153676.a ##22	ENSGT01030000234566.e.b.a.a.a.a	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00990000207961	ENSGT00940000159958.c	ENSGT00950000183159.a.v.a	ENSGT00940000157306	ENSGT00940000155988.c	ENSGT00940000154372.a.b.a	ENSGT00940000154372.a.a.b	ENSGT00530000063586.b.c.a	ENSGT00390000010628.a	ENSGT00390000005639.a.a.n	ENSGT00390000000470.m	ENSGT00390000015958.c
Atlantic herring	MODERN SPECIES	14	elf2b (ENSCHAG00000015150)	RAB33B (ENSCHAG00000015145)	naa15b (ENSCHAG00000014034)	ENSCHAG00000014006	ENSCHAG00000013941	scoca (ENSCHAG00000013928)	clgn (ENSCHAG00000013427)	fam184b (ENSCHAG00000013410)	med28 (ENSCHAG00000013382)	lap3 (ENSCHAG00000012553)	clrn2 (ENSCHAG00000012507)	kitb (ENSCHAG00000012047)	clockb (ENSCHAG00000010310)	ENSCHAG00000010243	ENSCHAG00000010259	dctd (ENSCHAG00000010185) ##22	TENM3 (ENSCHAG00000006766)	vegfc (ENSCHAG00000006654)	spcs3 (ENSCHAG00000006598)	asb5b (ENSCHAG00000006570)	ACER2 (ENSCHAG00000006517)	ENSCHAG00000006496	ENSCHAG00000006480	limch1a (ENSCHAG00000005837)	uchl1 (ENSCHAG00000005743)	anxa5b (ENSCHAG00000002839)	ENSCHAG00000002566	fgfbp2b (ENSCHAG00000002529)	prom1b (ENSCHAG00000025619)	tapt1b (ENSCHAG00000025603)	ldb2b (ENSCHAG00000025587)
Denticle herring	MODERN SPECIES	14	NOCT (ENSDCDG00000022062)	elf2b (ENSDCDG00000022060)	RAB33B (ENSDCDG00000022054)	naa15b (ENSDCDG00000021850)	ENSDCDG00000021842	scoca (ENSDCDG00000021836)	ENSDCDG00000021161	fam184b (ENSDCDG00000021137)	ENSDCDG00000021130	med28 (ENSDCDG00000021128)	lap3 (ENSDCDG00000021005)	clrn2 (ENSDCDG00000021002)	kitb (ENSDCDG00000020603)	clockb (ENSDCDG00000019632)	WWC2 (ENSDCDG00000019561)	dctd (ENSDCDG00000019547) ##22	ENSDCDG00000019544	TENM3 (ENSDCDG00000016011)	vegfc (ENSDCDG00000015874)	spcs3 (ENSDCDG00000015869)	asb5b (ENSDCDG00000015861)	ENSDCDG00000015856	ENSDCDG00000015852	ENSDCDG00000015848	ENSDCDG00000015846	uchl1 (ENSDCDG00000015749)	ENSDCDG00000015743	fgfbp2b (ENSDCDG00000015738)	prom1b (ENSDCDG00000015558)	ENSDCDG00000015483	limch1a (ENSDCDG00000015502)
Reedfish	DUPLICATION
Reedfish	DUPLICATION
Reedfish	MODERN SPECIES	12	ENSECRG00000002505	mab21l3 (ENSECRG00000002517)	atp1a1a.2 (ENSECRG00000002714)	ENSECRG00000004992	ENSECRG00000005051	ENSECRG00000005323	ENSECRG00000005337	ENSECRG00000005374	ENSECRG00000005391	ENSECRG00000005409	ENSECRG00000005420	igsf3 (ENSECRG00000005427)	ENSECRG00000005441	ENSECRG00000005464	ENSECRG00000005475	ENSECRG00000005482 ##22	ENSECRG00000005494 ##22	man1a2 (ENSECRG00000005505)	tent5c (ENSECRG00000005517)	gdap2 (ENSECRG00000005525)	wdr3 (ENSECRG00000005546)	ENSECRG00000005570	ENSECRG00000005579	tbx15 (ENSECRG00000005592)	wars2 (ENSECRG00000005605)	hao2 (ENSECRG00000005615)	ENSECRG00000005622	hsd3b2 (ENSECRG00000005633)	pla1a (ENSECRG00000005639)	popdc2 (ENSECRG00000005651)	cox17 (ENSECRG00000005658)
Reedfish	MODERN SPECIES	12	CFAP91 (ENSECRG00000005681)	cox17 (ENSECRG00000005658)	popdc2 (ENSECRG00000005651)	pla1a (ENSECRG00000005639)	hsd3b2 (ENSECRG00000005633)	ENSECRG00000005622	hao2 (ENSECRG00000005615)	wars2 (ENSECRG00000005605)	tbx15 (ENSECRG00000005592)	ENSECRG00000005579	ENSECRG00000005570	wdr3 (ENSECRG00000005546)	gdap2 (ENSECRG00000005525)	tent5c (ENSECRG00000005517)	man1a2 (ENSECRG00000005505)	ENSECRG00000005494 ##22	ENSECRG00000005482 ##22	ENSECRG00000005475	ENSECRG00000005464	ENSECRG00000005441	igsf3 (ENSECRG00000005427)	ENSECRG00000005420	ENSECRG00000005409	ENSECRG00000005391	ENSECRG00000005374	ENSECRG00000005337	ENSECRG00000005323	ENSECRG00000005051	ENSECRG00000004992	atp1a1a.2 (ENSECRG00000002714)	mab21l3 (ENSECRG00000002517)
Reedfish	MODERN SPECIES	13	ENSECRG00000002395	ENSECRG00000002428	primpol (ENSECRG00000002487)	casp3a (ENSECRG00000002508)	ENSECRG00000002525	ENSECRG00000002535	IRF2 (ENSECRG00000002559)	enpp6 (ENSECRG00000002573)	STOX2 (ENSECRG00000002588)	ENSECRG00000002611	ENSECRG00000002642	trappc11 (ENSECRG00000002691)	rwdd (ENSECRG00000002715)	ing2 (ENSECRG00000002724)	WWC2 (ENSECRG00000002739)	dctd (ENSECRG00000002775) ##22	ENSECRG00000002811	ENSECRG00000002850	ENSECRG00000002879	tenm3 (ENSECRG00000002887)	ENSECRG00000002892	ENSECRG00000002899	ENSECRG00000002907	aga (ENSECRG00000002913)	BMPR1B (ENSECRG00000002928)	pdlim5b (ENSECRG00000002952)	ENSECRG00000002969	kcnv2b (ENSECRG00000002976)	ints10 (ENSECRG00000002990)	ENSECRG00000003004	vldlr (ENSECRG00000003060)
Yeast	MODERN SPECIES	9	TDA11 (YHR159W)	KEL1 (YHR158C)	REC104 (YHR157W)	LIN1 (YHR156C)	LAM1 (YHR155W)	RTT107 (YHR154W)	SPO16 (YHR153C)	SPO12 (YHR152W)	MTC6 (YHR151C)	PEX28 (YHR150W)	SKG6 (YHR149C)	IMP3 (YHR148W)	MRPL6 (YHR147C)	CRP1 (YHR146W)	YHR145C	DCD1 (YHR144C) #22	RPC10 (YHR143W-A)	DSE2 (YHR143W)	CHS7 (YHR142W)	RPL42B (YHR141C)	YHR140W	YHR139C-A	SPS100 (YHR139C)	YHR138C	YHR137C-A	ARO9 (YHR137W)	SPL2 (YHR136C)	YCK1 (YHR135C)	WSS1 (YHR134W)	NSG1 (YHR133C)	IGO2 (YHR132W-A)