Cryptodira ANCESTRAL SPECIES 69 ENSGT01030000234646.A #14 ENSGT00940000157421 #15 ENSGT00940000162122 #16 ENSGT00940000154390.A.j.c.a.b.b #17 ENSGT00940000161588 #18 ENSGT00940000165156 #19 ENSGT00940000177683 #20 ENSGT00990000203866.b #21 ENSGT00530000063725.i.a.b #22 ENSGT01030000234627.a.b.b #23 ENSGT01030000234627.a.a.d #24 ENSGT00940000160236 #25 ENSGT01030000234576.D.a.b.b #26 ENSGT00940000160215 #27 ENSGT00940000154615 #28 ENSGT00940000162015.a.b #29 ENSGT00940000162015.a.a #30 ENSGT00940000154999.B.h #31 ENSGT00940000154999.A.g.a.a #32 ENSGT00940000154999.A.g.b #33 ENSGT00940000155138.k.b #34 ENSGT00390000018316.b.a #35 ENSGT00940000161127 #36 ENSGT00940000154762.a.a #37 Chinese turtle DUPLICATION Chinese turtle MODERN SPECIES 1964 PRSS53 (ENSPSIG00000004788) #16 ENSPSIG00000005435 #17 ZNF646 (ENSPSIG00000005522) #18 ENSPSIG00000005762 #22 ENSPSIG00000006163 ##22 ENSPSIG00000006174 ##22 ENSPSIG00000006216 ##22 ENSPSIG00000006225 ##22 ENSPSIG00000006683 ##22 STX1B (ENSPSIG00000004535) #24 HSD3B7 (ENSPSIG00000004936) #25 ENSPSIG00000005027 ENSPSIG00000005787 ENSPSIG00000005792 ENSPSIG00000000967 ENSPSIG00000005803 CTF1 (ENSPSIG00000005880) ENSPSIG00000000985 ENSPSIG00000005906 Chinese turtle MODERN SPECIES 782 ENSPSIG00000009272 #22 Testudinoidea DUPLICATION Testudinoidea ANCESTRAL SPECIES 44 ENSGT01030000234646.A #14 ENSGT00940000157421 #15 ENSGT00940000162122 #16 ENSGT00530000063725.i.a.b.d #22 ENSGT00940000154390.A.j.c.a.b.b #17 ENSGT00940000161588 #18 ENSGT00940000165156 #19 ENSGT00940000177683 #20 ENSGT00530000063725.i.a.b.c #22 ENSGT00530000063725.i.a.a ##22 ENSGT01030000234627.a.b.b #23 ENSGT01030000234627.a.a.d #24 ENSGT00940000160236 #25 ENSGT01100000263552.g.b.b.b.c.a.a.a.b ENSGT01100000263552.g.b.b.b.c.a.a.a.a.a ENSGT01100000263491.a.b.a.a.a.a.a.a.a.b ENSGT00510000048856.B ENSGT00510000048856.A ENSGT00390000002172.A.b ENSGT00940000154411.`b.i.h ENSGT01100000263552.g.b.b.a.a.a.a ENSGT00940000160707.a.a ENSGT00940000160215 #27 ENSGT00940000154615 #28 Emydidae DUPLICATION Emydidae ANCESTRAL SPECIES 72 ENSGT00940000154390.A.j.c.a.a.d ##17 ENSGT01030000235085.e.b.b.b ENSGT00940000154390.A.j.c.a.a.c.a.b ##17 ENSGT00940000154390.A.j.c.a.a.c.a.a ##17 ENSGT01030000234646.A #14 ENSGT00940000157421 #15 ENSGT00940000162122 #16 ENSGT00940000154390.A.j.c.a.b.b #17 ENSGT00940000161588 #18 ENSGT00940000165156 #19 ENSGT00940000177683 #20 ENSGT00530000063725.i.a.b.c.a #22 ENSGT01030000234627.a.b.b #23 ENSGT01030000234627.a.a.d #24 ENSGT00940000160236 #25 ENSGT01100000263552.g.b.b.b.c.a.a.a.b ENSGT01100000263552.g.b.b.b.c.a.a.a.a.a ENSGT00510000048856.B ENSGT00510000048856.A ENSGT00390000002172.A.b ENSGT00940000154411.`b.i.h ENSGT01100000263552.g.b.b.a.a.a.a ENSGT00940000160707.a.a ENSGT00940000160215 #27 ENSGT01030000234601.d ENSGT00940000154615 #28 ENSGT00940000162015.a.b #29 painted turtle DUPLICATION painted turtle MODERN SPECIES 2394 ENSCPBG00000010123 #33 ENSCPBG00000010050 ##34 ENSCPBG00000010034 ENSCPBG00000010028 #34 ENSCPBG00000010026 ##33 ENSCPBG00000010022 #34 ENSCPBG00000009913 ##33 ENSCPBG00000009898 ##33 PRSS53 (ENSCPBG00000009890) #16 ENSCPBG00000009886 #17 ENSCPBG00000009883 ENSCPBG00000009879 #17 ZNF646 (ENSCPBG00000009878) #18 ENSCPBG00000009875 #19 ENSCPBG00000009873 #20 ENSCPBG00000009871 #22 ENSCPBG00000009866 #22 ENSCPBG00000009863 #21 ENSCPBG00000009861 #22 ENSCPBG00000009857 ##21 STX4 (ENSCPBG00000009848) #23 STX1B (ENSCPBG00000009841) #24 HCRT (ENSCPBG00000009836) KCNH4 (ENSCPBG00000009830) RAB5C (ENSCPBG00000009826) ENSCPBG00000009824 ENSCPBG00000009820 ENSCPBG00000009818 KAT2A (ENSCPBG00000006907) DHX58 (ENSCPBG00000006804) ENSCPBG00000006797 painted turtle MODERN SPECIES 2394 ENSCPBG00000010050 ##34 ENSCPBG00000010034 ENSCPBG00000010028 #34 ENSCPBG00000010026 ##33 ENSCPBG00000010022 #34 ENSCPBG00000009913 ##33 ENSCPBG00000009898 ##33 PRSS53 (ENSCPBG00000009890) #16 ENSCPBG00000009886 #17 ENSCPBG00000009883 ENSCPBG00000009879 #17 ZNF646 (ENSCPBG00000009878) #18 ENSCPBG00000009875 #19 ENSCPBG00000009873 #20 ENSCPBG00000009871 #22 ENSCPBG00000009866 #22 ENSCPBG00000009863 #21 ENSCPBG00000009861 #22 ENSCPBG00000009857 ##21 STX4 (ENSCPBG00000009848) #23 STX1B (ENSCPBG00000009841) #24 HCRT (ENSCPBG00000009836) KCNH4 (ENSCPBG00000009830) RAB5C (ENSCPBG00000009826) ENSCPBG00000009824 ENSCPBG00000009820 ENSCPBG00000009818 KAT2A (ENSCPBG00000006907) DHX58 (ENSCPBG00000006804) ENSCPBG00000006797 ZNF385C (ENSCPBG00000006782) Three-toed box turtle MODERN SPECIES 194 ENSTMTG00000021192 ##17 ENSTMTG00000021197 ENSTMTG00000021199 ENSTMTG00000021203 ##17 ENSTMTG00000021210 ##17 BCKDK (ENSTMTG00000021213) #14 ENSTMTG00000021220 ENSTMTG00000021236 PRSS53 (ENSTMTG00000021246) #16 ENSTMTG00000021282 ZNF646 (ENSTMTG00000021291) #18 ENSTMTG00000021298 #19 ENSTMTG00000021333 #22 STX4 (ENSTMTG00000021345) #23 STX1B (ENSTMTG00000021354) #24 HSD3B7 (ENSTMTG00000021375) #25 ENSTMTG00000021382 ENSTMTG00000021388 ENSTMTG00000021398 ENSTMTG00000021403 ENSTMTG00000021406 CTF1 (ENSTMTG00000021411) ENSTMTG00000021415 #26 ENSTMTG00000021421 #27 ENSTMTG00000021427 #27 ENSTMTG00000021430 ENSTMTG00000021434 ENSTMTG00000021441 Emydidae ANCESTRAL SPECIES 242 ENSGT00990000203866.b #21 ENSGT00530000063725.i.a.b.c.b #22 ENSGT00990000203866.a ##21 painted turtle MODERN SPECIES 2394 ENSCPBG00000010028 #34 ENSCPBG00000010026 ##33 ENSCPBG00000010022 #34 ENSCPBG00000009913 ##33 ENSCPBG00000009898 ##33 PRSS53 (ENSCPBG00000009890) #16 ENSCPBG00000009886 #17 ENSCPBG00000009883 ENSCPBG00000009879 #17 ZNF646 (ENSCPBG00000009878) #18 ENSCPBG00000009875 #19 ENSCPBG00000009873 #20 ENSCPBG00000009871 #22 ENSCPBG00000009866 #22 ENSCPBG00000009863 #21 ENSCPBG00000009861 #22 ENSCPBG00000009857 ##21 STX4 (ENSCPBG00000009848) #23 STX1B (ENSCPBG00000009841) #24 HCRT (ENSCPBG00000009836) KCNH4 (ENSCPBG00000009830) RAB5C (ENSCPBG00000009826) ENSCPBG00000009824 ENSCPBG00000009820 ENSCPBG00000009818 KAT2A (ENSCPBG00000006907) DHX58 (ENSCPBG00000006804) ENSCPBG00000006797 ZNF385C (ENSCPBG00000006782) NKIRAS2 (ENSCPBG00000006772) DNAJC7 (ENSCPBG00000006760) Three-toed box turtle MODERN SPECIES 2116 ENSTMTG00000018454 #21 ENSTMTG00000018464 #22 Testudinidae ANCESTRAL SPECIES 340 ENSGT00530000063725.i.a.b.c #22 ENSGT00530000063725.i.a.a ##22 Abingdon island giant tortoise DUPLICATION Abingdon island giant tortoise DUPLICATION Abingdon island giant tortoise DUPLICATION Abingdon island giant tortoise MODERN SPECIES 2450 ENSCABG00000019412 ENSCABG00000019416 BCKDK (ENSCABG00000019417) #14 VKORC1 (ENSCABG00000019419) #15 ENSCABG00000019421 ENSCABG00000019422 PRSS53 (ENSCABG00000019425) #16 ENSCABG00000019427 #22 ENSCABG00000019429 #17 ZNF646 (ENSCABG00000019436) #18 ENSCABG00000019445 #19 ENSCABG00000019447 ENSCABG00000019451 #22 ENSCABG00000019455 #22 ENSCABG00000019456 #22 ENSCABG00000019458 #22 ENSCABG00000019461 ##22 STX4 (ENSCABG00000019462) #23 STX1B (ENSCABG00000019467) #24 HSD3B7 (ENSCABG00000019474) #25 ENSCABG00000019478 ORAI3 (ENSCABG00000019481) ENSCABG00000019484 ENSCABG00000019485 ENSCABG00000019487 Abingdon island giant tortoise MODERN SPECIES 2450 ENSCABG00000019412 ENSCABG00000019416 BCKDK (ENSCABG00000019417) #14 VKORC1 (ENSCABG00000019419) #15 ENSCABG00000019421 ENSCABG00000019422 PRSS53 (ENSCABG00000019425) #16 ENSCABG00000019427 #22 ENSCABG00000019429 #17 ZNF646 (ENSCABG00000019436) #18 ENSCABG00000019445 #19 ENSCABG00000019447 ENSCABG00000019451 #22 ENSCABG00000019455 #22 ENSCABG00000019456 #22 ENSCABG00000019458 #22 ENSCABG00000019461 ##22 STX4 (ENSCABG00000019462) #23 STX1B (ENSCABG00000019467) #24 HSD3B7 (ENSCABG00000019474) #25 ENSCABG00000019478 ORAI3 (ENSCABG00000019481) ENSCABG00000019484 ENSCABG00000019485 ENSCABG00000019487 Abingdon island giant tortoise MODERN SPECIES 2450 ENSCABG00000019412 ENSCABG00000019416 BCKDK (ENSCABG00000019417) #14 VKORC1 (ENSCABG00000019419) #15 ENSCABG00000019421 ENSCABG00000019422 PRSS53 (ENSCABG00000019425) #16 ENSCABG00000019427 #22 ENSCABG00000019429 #17 ZNF646 (ENSCABG00000019436) #18 ENSCABG00000019445 #19 ENSCABG00000019447 ENSCABG00000019451 #22 ENSCABG00000019455 #22 ENSCABG00000019456 #22 ENSCABG00000019458 #22 ENSCABG00000019461 ##22 STX4 (ENSCABG00000019462) #23 STX1B (ENSCABG00000019467) #24 HSD3B7 (ENSCABG00000019474) #25 ENSCABG00000019478 ORAI3 (ENSCABG00000019481) ENSCABG00000019484 ENSCABG00000019485 ENSCABG00000019487 Abingdon island giant tortoise MODERN SPECIES 2450 ENSCABG00000019412 ENSCABG00000019416 BCKDK (ENSCABG00000019417) #14 VKORC1 (ENSCABG00000019419) #15 ENSCABG00000019421 ENSCABG00000019422 PRSS53 (ENSCABG00000019425) #16 ENSCABG00000019427 #22 ENSCABG00000019429 #17 ZNF646 (ENSCABG00000019436) #18 ENSCABG00000019445 #19 ENSCABG00000019447 ENSCABG00000019451 #22 ENSCABG00000019455 #22 ENSCABG00000019456 #22 ENSCABG00000019458 #22 ENSCABG00000019461 ##22 STX4 (ENSCABG00000019462) #23 STX1B (ENSCABG00000019467) #24 HSD3B7 (ENSCABG00000019474) #25 ENSCABG00000019478 ORAI3 (ENSCABG00000019481) ENSCABG00000019484 ENSCABG00000019485 ENSCABG00000019487 Testudinoidea ANCESTRAL SPECIES 44 ENSGT01030000234646.A #14 ENSGT00940000157421 #15 ENSGT00940000162122 #16 ENSGT00530000063725.i.a.b.d #22 ENSGT00940000154390.A.j.c.a.b.b #17 ENSGT00940000161588 #18 ENSGT00940000165156 #19 ENSGT00940000177683 #20 ENSGT00530000063725.i.a.b.c #22 ENSGT00530000063725.i.a.a ##22 ENSGT01030000234627.a.b.b #23 ENSGT01030000234627.a.a.d #24 ENSGT00940000160236 #25 ENSGT01100000263552.g.b.b.b.c.a.a.a.b ENSGT01100000263552.g.b.b.b.c.a.a.a.a.a ENSGT01100000263491.a.b.a.a.a.a.a.a.a.b ENSGT00510000048856.B ENSGT00510000048856.A ENSGT00390000002172.A.b Testudinidae ANCESTRAL SPECIES 72 ENSGT01100000263496.C.b.f ENSGT00940000163951.c.a.b ENSGT00940000154390.A.j.c.a.a.d ##17 ENSGT01030000235085.e.b.b.b ENSGT01030000234646.A #14 ENSGT00940000157421 #15 ENSGT00940000160153.e.b ENSGT00940000162122 #16 ENSGT00530000063725.i.a.b.d #22 ENSGT00940000154390.A.j.c.a.b.b #17 ENSGT00940000161588 #18 ENSGT00940000165156 #19 ENSGT00530000067530 ENSGT00530000063725.i.b.a ##22 ENSGT01030000234627.a.b.b #23 ENSGT01030000234627.a.a.d #24 ENSGT00940000160236 #25 ENSGT00940000162290 ENSGT00390000015354.c.a ENSGT01100000263552.g.b.b.b.c.a.a.a.b ENSGT01100000263552.g.b.b.b.c.a.a.a.a.a ENSGT01100000263491.a.b.a.a.a.a.a.a.a.b ENSGT00510000048856.B ENSGT00510000048856.A Abingdon island giant tortoise MODERN SPECIES 2450 ENSCABG00000019412 ENSCABG00000019416 BCKDK (ENSCABG00000019417) #14 VKORC1 (ENSCABG00000019419) #15 ENSCABG00000019421 ENSCABG00000019422 PRSS53 (ENSCABG00000019425) #16 ENSCABG00000019427 #22 ENSCABG00000019429 #17 ZNF646 (ENSCABG00000019436) #18 ENSCABG00000019445 #19 ENSCABG00000019447 ENSCABG00000019451 #22 ENSCABG00000019455 #22 ENSCABG00000019456 #22 ENSCABG00000019458 #22 ENSCABG00000019461 ##22 STX4 (ENSCABG00000019462) #23 STX1B (ENSCABG00000019467) #24 HSD3B7 (ENSCABG00000019474) #25 ENSCABG00000019478 ORAI3 (ENSCABG00000019481) ENSCABG00000019484 Goode s thornscrub tortoise MODERN SPECIES 18 ENSGEVG00005011369 ENSGEVG00005011400 ENSGEVG00005011412 ENSGEVG00005011468 ENSGEVG00005011563 ENSGEVG00005011593 ENSGEVG00005011610 ENSGEVG00005011623 ENSGEVG00005011636 ##17 ENSGEVG00005011680 BCKDK (ENSGEVG00005011696) #14 VKORC1 (ENSGEVG00005011730) #15 ENSGEVG00005011754 ENSGEVG00005011802 PRSS53 (ENSGEVG00005011846) #16 ENSGEVG00005011946 #22 ENSGEVG00005012038 #17 ZNF646 (ENSGEVG00005012061) #18 ENSGEVG00005012077 #19 ENSGEVG00005012096 ENSGEVG00005012147 ##22 ENSGEVG00005012183 ##22 ENSGEVG00005012260 ##22 ENSGEVG00005012304 ##22 STX4 (ENSGEVG00005012347) #23 STX1B (ENSGEVG00005012373) #24 HSD3B7 (ENSGEVG00005012512) #25 ENSGEVG00005012542 ENSGEVG00005012593 ENSGEVG00005012616 ENSGEVG00005012647