Euteleostomi	ANCESTRAL SPECIES	957															ENSGT00990000203866	ENSGT00530000063725 #22	ENSGT01030000234627.a.a.d
Sarcopterygii	ANCESTRAL SPECIES	842															ENSGT00990000203866	ENSGT00530000063725 #22	ENSGT01030000234627.a.a.d
Tetrapoda	ANCESTRAL SPECIES	395															ENSGT00990000203866	ENSGT00530000063725 #22	ENSGT00940000154390.A.i.b
Amniota	ANCESTRAL SPECIES	87		ENSGT00940000164039	ENSGT00390000009109	ENSGT00940000160447	ENSGT00940000160533	ENSGT00390000000050	ENSGT00520000055626.b	ENSGT00940000161032	ENSGT00940000157457	ENSGT00940000160435	ENSGT00940000154323.a	ENSGT00940000157290	ENSGT00940000159512	ENSGT01030000234646.A	ENSGT00990000203866	ENSGT00530000063725 #22	ENSGT01030000234627.a.b.b	ENSGT01030000234627.a.a.d	ENSGT00940000160236	ENSGT00940000154575.b	ENSGT00940000179983	ENSGT00940000162290	ENSGT00390000015354.c.a
Mammalia	ANCESTRAL SPECIES	34	ENSGT00390000018109	ENSGT00390000018119 #7	ENSGT00940000157107 #9	ENSGT00940000161045 #10	ENSGT00940000156695.f #11	ENSGT00940000163216 #13	ENSGT00940000155245 #12	ENSGT00940000163256	ENSGT00490000043902 #14	ENSGT00950000182898.a.a.b #15	ENSGT00950000182815.a.a.a.b #16	ENSGT00390000007221.a.b #18	ENSGT00390000000046 #19	ENSGT00510000048896 #20	ENSGT00940000158426 #21	ENSGT00530000063725 #22	ENSGT00390000005448 #23	ENSGT00940000160223 #24	ENSGT00940000155342 #25	ENSGT00730000111199 #27	ENSGT01070000253744.b.a.b #29	ENSGT00390000017004.a.b #30	ENSGT00940000155276 #31	ENSGT00390000014627 #32	ENSGT00390000004582 #33	ENSGT00940000158120 #34	ENSGT00940000154865 #35	ENSGT00940000170705	ENSGT00940000163077 #37	ENSGT00940000157973	ENSGT00940000155512
Theria	ANCESTRAL SPECIES	21	ENSGT00390000018109	ENSGT00390000018119 #7	ENSGT00940000157107 #9	ENSGT00940000161045 #10	ENSGT00940000156695.f #11	ENSGT00940000163256	ENSGT00940000155245 #12	ENSGT00940000163216 #13	ENSGT00490000043902 #14	ENSGT00950000182898.a.a.b #15	ENSGT00950000182815.a.a.a.b #16	ENSGT00390000007221.a.b #18	ENSGT00390000000046 #19	ENSGT00510000048896 #20	ENSGT00940000158426 #21	ENSGT00530000063725 #22	ENSGT00390000005448 #23	ENSGT00940000160223 #24	ENSGT00940000155342 #25	ENSGT00730000111199 #27	ENSGT01070000253744.b.a.b #29	ENSGT00390000017004.a.b #30	ENSGT00940000155276 #31	ENSGT00390000014627 #32	ENSGT00390000004582 #33	ENSGT00940000158120 #34	ENSGT00940000154865 #35	ENSGT00940000154340.B #36	ENSGT00940000163077 #37	ENSGT00940000157973	ENSGT00940000155512
Eutheria	ANCESTRAL SPECIES	13	ENSGT00390000018109	ENSGT00390000018119 #7	ENSGT00940000157107 #9	ENSGT00940000161045 #10	ENSGT00940000156695.f #11	ENSGT00940000163216 #13	ENSGT00940000155245 #12	ENSGT00940000163256	ENSGT00490000043902 #14	ENSGT00950000182898.a.a.b #15	ENSGT00950000182815.a.a.a.b #16	ENSGT00390000007221.a.b #18	ENSGT00390000000046 #19	ENSGT00510000048896 #20	ENSGT00940000158426 #21	ENSGT00530000063725 #22	ENSGT00390000005448 #23	ENSGT00940000160223 #24	ENSGT00940000155342 #25	ENSGT00730000111199 #27	ENSGT01070000253744.b.a.b #29	ENSGT00390000017004.a.b #30	ENSGT00940000155276 #31	ENSGT00390000014627 #32	ENSGT00390000004582 #33	ENSGT00940000158120 #34	ENSGT00940000154865 #35	ENSGT00940000154340.B #36	ENSGT00940000163077 #37	ENSGT00940000157973	ENSGT00940000155512
Boreoeutheria	ANCESTRAL SPECIES	16	ENSGT00940000157107 #9	ENSGT00940000164185	ENSGT00910000147834	ENSGT00940000161045 #10	ENSGT00940000156695.f #11	ENSGT00940000163216 #13	ENSGT00940000155245 #12	ENSGT00940000163256	ENSGT00490000043902 #14	ENSGT00950000182898.a.a.b #15	ENSGT00950000182815.a.a.a.b #16	ENSGT00390000007221.a.b #18	ENSGT00390000000046 #19	ENSGT00510000048896 #20	ENSGT00940000158426 #21	ENSGT00530000063725 #22	ENSGT00390000005448 #23	ENSGT00940000160223 #24	ENSGT00980000202026	ENSGT00940000155342 #25	ENSGT00730000111199 #27	ENSGT01070000253744.b.a.b #29	ENSGT00390000017004.a.b #30	ENSGT00940000155276 #31	ENSGT00910000146657	ENSGT00390000014627 #32	ENSGT00390000004582 #33	ENSGT00940000158120 #34	ENSGT00940000154865 #35	ENSGT00940000170705	ENSGT00940000163077 #37
Euarchontoglires	ANCESTRAL SPECIES	16	ENSGT00940000157107 #9	ENSGT00940000164185	ENSGT00910000147834	ENSGT00940000161045 #10	ENSGT00940000156695.f #11	ENSGT00940000163216 #13	ENSGT00940000155245 #12	ENSGT00940000163256	ENSGT00490000043902 #14	ENSGT00950000182898.a.a.b #15	ENSGT00950000182815.a.a.a.b #16	ENSGT00390000007221.a.b #18	ENSGT00390000000046 #19	ENSGT00510000048896 #20	ENSGT00940000158426 #21	ENSGT00530000063725 #22	ENSGT00390000005448 #23	ENSGT00940000160223 #24	ENSGT00980000202026	ENSGT00940000155342 #25	ENSGT00730000111199 #27	ENSGT01070000253744.b.a.b #29	ENSGT00390000017004.a.b #30	ENSGT00940000155276 #31	ENSGT00910000146657	ENSGT00390000014627 #32	ENSGT00390000004582 #33	ENSGT00940000158120 #34	ENSGT00940000154865 #35	ENSGT00940000170705	ENSGT00940000163077 #37
Euarchontoglires_A	ANCESTRAL SPECIES	15	ENSGT00390000018119 #7	ENSGT00940000157107 #9	ENSGT00910000147834	ENSGT00940000161045 #10	ENSGT00940000156695.f #11	ENSGT00940000163216 #13	ENSGT00940000155245 #12	ENSGT00940000163256	ENSGT00490000043902 #14	ENSGT00950000182898.a.a.b #15	ENSGT00950000182815.a.a.a.b #16	ENSGT00390000007221.a.b #18	ENSGT00390000000046 #19	ENSGT00510000048896 #20	ENSGT00940000158426 #21	ENSGT00530000063725 #22	ENSGT00390000005448 #23	ENSGT00940000160223 #24	ENSGT00940000155342 #25	ENSGT00730000111199 #27	ENSGT01070000253744.b.a.b #29	ENSGT00390000017004.a.b #30	ENSGT00940000155276 #31	ENSGT00910000146657	ENSGT00390000014627 #32	ENSGT00390000004582 #33	ENSGT00940000158120 #34	ENSGT00940000154865 #35	ENSGT00940000154340.B #36	ENSGT00940000163077 #37	ENSGT00940000157973
Glires	ANCESTRAL SPECIES	16	ENSGT00390000018119 #7	ENSGT00940000157107 #9	ENSGT00910000147834	ENSGT00940000161045 #10	ENSGT00940000156695.f #11	ENSGT00940000163216 #13	ENSGT00940000155245 #12	ENSGT00940000163256	ENSGT00490000043902 #14	ENSGT00950000182898.a.a.b #15	ENSGT00950000182815.a.a.a.b #16	ENSGT00390000007221.a.b #18	ENSGT00390000000046 #19	ENSGT00510000048896 #20	ENSGT00940000158426 #21	ENSGT00530000063725 #22	ENSGT00390000005448 #23	ENSGT00940000160223 #24	ENSGT00940000155342 #25	ENSGT00730000111199 #27	ENSGT01070000253744.b.a.b #29	ENSGT00390000017004.a.b #30	ENSGT00940000155276 #31	ENSGT00910000146657	ENSGT00390000014627 #32	ENSGT00390000004582 #33	ENSGT00940000158120 #34	ENSGT00940000154865 #35	ENSGT00940000170705	ENSGT00940000163077 #37	ENSGT00940000154340.B #36
Rodentia	ANCESTRAL SPECIES	16	ENSGT00390000018119 #7	ENSGT00940000157107 #9	ENSGT00910000147834	ENSGT00940000161045 #10	ENSGT00940000156695.f #11	ENSGT00940000163216 #13	ENSGT00940000155245 #12	ENSGT00940000163256	ENSGT00490000043902 #14	ENSGT00950000182898.a.a.b #15	ENSGT00950000182815.a.a.a.b #16	ENSGT00390000007221.a.b #18	ENSGT00390000000046 #19	ENSGT00510000048896 #20	ENSGT00940000158426 #21	ENSGT00530000063725 #22	ENSGT00390000005448 #23	ENSGT00940000160223 #24	ENSGT00940000155342 #25	ENSGT00730000111199 #27	ENSGT01070000253744.b.a.b #29	ENSGT00390000017004.a.b #30	ENSGT00940000155276 #31	ENSGT00910000146657	ENSGT00390000014627 #32	ENSGT00390000004582 #33	ENSGT00940000158120 #34	ENSGT00940000154865 #35	ENSGT00940000154340.B #36	ENSGT00940000163077 #37	ENSGT00940000157973
Rodentia_B	ANCESTRAL SPECIES	10	ENSGT00390000018119 #7	ENSGT00940000157107 #9	ENSGT00910000147834	ENSGT00940000161045 #10	ENSGT00940000156695.f #11	ENSGT00940000163216 #13	ENSGT00940000155245 #12	ENSGT00940000163256	ENSGT00490000043902 #14	ENSGT00950000182898.a.a.b #15	ENSGT00950000182815.a.a.a.b #16	ENSGT00390000007221.a.b #18	ENSGT00390000000046 #19	ENSGT00510000048896 #20	ENSGT00940000158426 #21	ENSGT00530000063725 #22	ENSGT00390000005448 #23	ENSGT00940000160223 #24	ENSGT00940000155342 #25	ENSGT00730000111199 #27	ENSGT01070000253744.b.a.b #29	ENSGT00390000017004.a.b #30	ENSGT00940000155276 #31	ENSGT00910000146657	ENSGT00390000014627 #32	ENSGT00390000004582 #33	ENSGT00940000158120 #34	ENSGT00940000154865 #35	ENSGT00940000154340.B #36	ENSGT00940000163077 #37	ENSGT00940000157973
Myomorpha	ANCESTRAL SPECIES	15	ENSGT00390000018109	ENSGT00390000018119 #7	ENSGT00940000157107 #9	ENSGT00910000147834	ENSGT00940000161045 #10	ENSGT00940000156695.f #11	ENSGT00940000155245 #12	ENSGT00940000163256	ENSGT00490000043902 #14	ENSGT00950000182898.a.a.b #15	ENSGT00950000182815.a.a.a.b #16	ENSGT00390000007221.a.b #18	ENSGT00390000000046 #19	ENSGT00510000048896 #20	ENSGT00940000158426 #21	ENSGT00530000063725 #22	ENSGT00390000005448 #23	ENSGT00940000160223 #24	ENSGT00940000155342 #25	ENSGT00730000111199 #27	ENSGT01070000253744.b.a.b #29	ENSGT00390000017004.a.b #30	ENSGT00940000155276 #31	ENSGT00910000146657	ENSGT00390000014627 #32	ENSGT00390000004582 #33	ENSGT00940000158120 #34	ENSGT00940000154865 #35	ENSGT00940000154340.B #36	ENSGT00940000163077 #37	ENSGT00940000157973
Muroidea	ANCESTRAL SPECIES	43	ENSGT00390000018109	ENSGT00390000018119 #7	ENSGT00940000157107 #9	ENSGT00910000147834	ENSGT00940000161045 #10	ENSGT00940000156695.f #11	ENSGT00940000155245 #12	ENSGT00940000163256	ENSGT00490000043902 #14	ENSGT00950000182898.a.a.b #15	ENSGT00950000182815.a.a.a.b #16	ENSGT00390000007221.a.b #18	ENSGT00390000000046 #19	ENSGT00510000048896 #20	ENSGT00940000158426 #21	ENSGT00530000063725 #22	ENSGT00390000005448 #23	ENSGT00940000160223 #24	ENSGT00940000155342 #25	ENSGT00730000111199 #27	ENSGT01070000253744.b.a.b #29	ENSGT00390000017004.a.b #30	ENSGT00940000155276 #31	ENSGT00910000146657	ENSGT00390000014627 #32	ENSGT00390000004582 #33	ENSGT00940000158120 #34	ENSGT00940000154865 #35	ENSGT00940000154340.B #36	ENSGT00940000163077 #37	ENSGT00940000157973
Muroidea_A	ANCESTRAL SPECIES	8	ENSGT00390000018109	ENSGT00390000018119 #7	ENSGT00940000157107 #9	ENSGT00910000147834	ENSGT00940000161045 #10	ENSGT00940000156695.f #11	ENSGT00940000155245 #12	ENSGT00940000163216 #13	ENSGT00490000043902 #14	ENSGT00950000182898.a.a.b #15	ENSGT00950000182815.a.a.a.b #16	ENSGT00390000007221.a.b #18	ENSGT00390000000046 #19	ENSGT00510000048896 #20	ENSGT00940000158426 #21	ENSGT00530000063725 #22	ENSGT00390000005448 #23	ENSGT00940000160223 #24	ENSGT00940000155342 #25	ENSGT00730000111199 #27	ENSGT01070000253744.b.a.b #29	ENSGT00390000017004.a.b #30	ENSGT00940000155276 #31	ENSGT00910000146657	ENSGT00390000014627 #32	ENSGT00390000004582 #33	ENSGT00940000158120 #34	ENSGT00940000154865 #35	ENSGT00940000154340.B #36	ENSGT00940000163077 #37	ENSGT00940000157973
Murinae	ANCESTRAL SPECIES	18	ENSGT00390000018109	ENSGT00390000018119 #7	ENSGT00940000157107 #9	ENSGT00910000147834	ENSGT00940000161045 #10	ENSGT00940000156695.f #11	ENSGT00940000155245 #12	ENSGT00940000163256	ENSGT00490000043902 #14	ENSGT00950000182898.a.a.b #15	ENSGT00950000182815.a.a.a.b #16	ENSGT00390000007221.a.b #18	ENSGT00390000000046 #19	ENSGT00510000048896 #20	ENSGT00940000158426 #21	ENSGT00530000063725 #22	ENSGT00390000005448 #23	ENSGT00940000160223 #24	ENSGT00940000155342 #25	ENSGT00730000111199 #27	ENSGT01070000253744.b.a.b #29	ENSGT00390000017004.a.b #30	ENSGT00940000155276 #31	ENSGT00910000146657	ENSGT00390000014627 #32	ENSGT00390000004582 #33	ENSGT00940000158120 #34	ENSGT00940000154865 #35	ENSGT00940000154340.B #36	ENSGT00940000163077 #37	ENSGT00940000157973
Rat	MODERN SPECIES	12	Ascc1 (ENSRNOG00000056647) #7	AC096404.1 (ENSRNOG00000000574) #8	Spock2 (ENSRNOG00000061544) #9	Chst3 (ENSRNOG00000000572) #10	Psap (ENSRNOG00000000571) #11	Cdh23 (ENSRNOG00000033087) #12	Vsir (ENSRNOG00000000569) #13	LOC100361018 (ENSRNOG00000046494) #14	Slc29a3 (ENSRNOG00000000568) #15	Unc5b (ENSRNOG00000000567) #16	Pcbd1 (ENSRNOG00000000566) #17	Pcbd1 (ENSRNOG00000067614) #18	Sgpl1 (ENSRNOG00000000565) #19	Tbata (ENSRNOG00000000564) #20	Adamts14 (ENSRNOG00000000563) #21	Prf1 (ENSRNOG00000000562) #22	Pald1 (ENSRNOG00000000561) #23	Nodal (ENSRNOG00000000556) #24	Eif4ebp2 (ENSRNOG00000055391) #25	ENSRNOG00000066789 #26	Lrrc20 (ENSRNOG00000000560) #27	ENSRNOG00000069172 #28	Npffr1 (ENSRNOG00000000559) #29	Ppa1 (ENSRNOG00000063854) #30	Ppa1 (ENSRNOG00000000557) #31	Tysnd1 (ENSRNOG00000024839) #32	Aifm2 (ENSRNOG00000059445) #33	Macroh2a2 (ENSRNOG00000024751) #34	Col13a1 (ENSRNOG00000000552) #35	Fam241b (ENSRNOG00000000551) #36	Neurog3 (ENSRNOG00000024413) #37
Mus	ANCESTRAL SPECIES	15	ENSGT00390000018109	ENSGT00390000018119 #7	ENSGT00940000157107 #9	ENSGT00910000147834	ENSGT00940000161045 #10	ENSGT00940000156695.f #11	ENSGT00940000155245 #12	ENSGT00940000163256	ENSGT00490000043902 #14	ENSGT00950000182898.a.a.b #15	ENSGT00950000182815.a.a.a.b #16	ENSGT00390000007221.a.b #18	ENSGT00390000000046 #19	ENSGT00510000048896 #20	ENSGT00940000158426 #21	ENSGT00530000063725 #22	ENSGT00390000005448 #23	ENSGT00940000160223 #24	ENSGT00940000155342 #25	ENSGT00900000143318	ENSGT00730000111199 #27	ENSGT01070000253744.b.a.b #29	ENSGT00390000017004.a.b #30	ENSGT00940000155276 #31	ENSGT00910000146657	ENSGT00390000014627 #32	ENSGT00390000004582 #33	ENSGT00940000158120 #34	ENSGT00940000154865 #35	ENSGT00940000154340.B #36	ENSGT00940000163077 #37
Mus_A	ANCESTRAL SPECIES	11	ENSGT00390000018109	ENSGT00390000018119 #7	ENSGT00940000157107 #9	ENSGT00910000147834	ENSGT00940000161045 #10	ENSGT00940000156695.f #11	ENSGT00940000155245 #12	ENSGT00940000163256	ENSGT00490000043902 #14	ENSGT00950000182898.a.a.b #15	ENSGT00950000182815.a.a.a.b #16	ENSGT00390000007221.a.b #18	ENSGT00390000000046 #19	ENSGT00510000048896 #20	ENSGT00940000158426 #21	ENSGT00530000063725 #22	ENSGT00390000005448 #23	ENSGT00940000160223 #24	ENSGT00940000155342 #25	ENSGT00900000143318	ENSGT00730000111199 #27	ENSGT01070000253744.b.a.b #29	ENSGT00390000017004.a.b #30	ENSGT00940000155276 #31	ENSGT00910000146657	ENSGT00390000014627 #32	ENSGT00390000004582 #33	ENSGT00940000158120 #34	ENSGT00940000154865 #35	ENSGT00940000170705	ENSGT00940000163077 #37
Mus_B	ANCESTRAL SPECIES	10	ENSGT00390000018109	ENSGT00390000018119 #7	ENSGT00940000157107 #9	ENSGT00910000147834	ENSGT00940000161045 #10	ENSGT00940000156695.f #11	ENSGT00940000155245 #12	ENSGT00940000163256	ENSGT00490000043902 #14	ENSGT00950000182898.a.a.b #15	ENSGT00950000182815.a.a.a.b #16	ENSGT00390000007221.a.b #18	ENSGT00390000000046 #19	ENSGT00510000048896 #20	ENSGT00940000158426 #21	ENSGT00530000063725 #22	ENSGT00390000005448 #23	ENSGT00940000160223 #24	ENSGT00940000155342 #25	ENSGT00900000143318	ENSGT00730000111199 #27	ENSGT01070000253744.b.a.b #29	ENSGT00390000017004.a.b #30	ENSGT00940000155276 #31	ENSGT00910000146657	ENSGT00390000014627 #32	ENSGT00390000004582 #33	ENSGT00940000158120 #34	ENSGT00940000154865 #35	ENSGT00940000170705	ENSGT00940000163077 #37
Mouse	MODERN SPECIES	1	Ddit4 (ENSMUSG00000020108)	Anapc16 (ENSMUSG00000020107)	Ascc1 (ENSMUSG00000044475) #7	Spock2 (ENSMUSG00000058297) #9	Chst3 (ENSMUSG00000057337) #10	Psap (ENSMUSG00000004207) #11	Cdh23 (ENSMUSG00000012819) #12	Vsir (ENSMUSG00000020101)	Gm17455 (ENSMUSG00000090439) #14	Slc29a3 (ENSMUSG00000020100) #15	Unc5b (ENSMUSG00000020099) #16	Pcbd1 (ENSMUSG00000020098) #18	Sgpl1 (ENSMUSG00000020097) #19	Tbata (ENSMUSG00000020096) #20	Adamts14 (ENSMUSG00000059901) #21	Prf1 (ENSMUSG00000037202) #22	Pald1 (ENSMUSG00000020092) #23	Nodal (ENSMUSG00000037171) #24	Eif4ebp2 (ENSMUSG00000020091) #25	Lrrc20 (ENSMUSG00000037151) #27	Npffr1 (ENSMUSG00000020090) #29	Ppa1 (ENSMUSG00000020089) #30	Sar1a (ENSMUSG00000020088) #31	Tysnd1 (ENSMUSG00000020087) #32	Aifm2 (ENSMUSG00000020085) #33	Macroh2a2 (ENSMUSG00000020086) #34	Col13a1 (ENSMUSG00000058806) #35	Fam241b (ENSMUSG00000020083)	Neurog3 (ENSMUSG00000044312) #37	Tspan15 (ENSMUSG00000037031)	Tacr2 (ENSMUSG00000020081)
Mus_C	ANCESTRAL SPECIES	7	ENSGT00390000018109	ENSGT00390000018119 #7	ENSGT00940000157107 #9	ENSGT00910000147834	ENSGT00940000161045 #10	ENSGT00940000156695.f #11	ENSGT00940000155245 #12	ENSGT00940000163256	ENSGT00490000043902 #14	ENSGT00950000182898.a.a.b #15	ENSGT00950000182815.a.a.a.b #16	ENSGT00390000007221.a.b #18	ENSGT00390000000046 #19	ENSGT00510000048896 #20	ENSGT00940000158426 #21	ENSGT00530000063725 #22	ENSGT00390000005448 #23	ENSGT00940000160223 #24	ENSGT00940000155342 #25	ENSGT00900000143318	ENSGT00730000111199 #27	ENSGT01070000253744.b.a.b #29	ENSGT00390000017004.a.b #30	ENSGT00940000155276 #31	ENSGT00910000146657	ENSGT00390000014627 #32	ENSGT00390000004582 #33	ENSGT00940000158120 #34	ENSGT00940000154865 #35	ENSGT00940000170705	ENSGT00940000163077 #37
Steppe mouse	MODERN SPECIES	3114	ENSMSIG00000010239	Spock2 (ENSMSIG00000010244) #9	ENSMSIG00000010337	Chst3 (ENSMSIG00000010346) #10	Psap (ENSMSIG00000010366) #11	Cdh23 (ENSMSIG00000011065) #12	Vsir (ENSMSIG00000013001)	Gm17455 (ENSMSIG00000013035) #14	Slc29a3 (ENSMSIG00000013039) #15	Unc5b (ENSMSIG00000013086) #16	ENSMSIG00000013208	Pcbd1 (ENSMSIG00000013225) #18	Sgpl1 (ENSMSIG00000013240) #19	Tbata (ENSMSIG00000013277) #20	Adamts14 (ENSMSIG00000013345) #21	Prf1 (ENSMSIG00000013413) #22	Pald1 (ENSMSIG00000013427) #23	ENSMSIG00000013503	Nodal (ENSMSIG00000013518) #24	Eif4ebp2 (ENSMSIG00000013532) #25	ENSMSIG00000013570	ENSMSIG00000013576 #27
spretus	MODERN SPECIES	1	Hk1 (MGP_SPRETEiJ_G0016192)	Tacr2 (MGP_SPRETEiJ_G0016191)	Tspan15 (MGP_SPRETEiJ_G0016190)	Neurog3 (MGP_SPRETEiJ_G0016189) #37	Fam241b (MGP_SPRETEiJ_G0016188)	Col13a1 (MGP_SPRETEiJ_G0016187) #35	Macroh2a2 (MGP_SPRETEiJ_G0016186) #34	Aifm2 (MGP_SPRETEiJ_G0016185) #33	Tysnd1 (MGP_SPRETEiJ_G0016184) #32	Sar1a (MGP_SPRETEiJ_G0016183) #31	Ppa1 (MGP_SPRETEiJ_G0016182) #30	Npffr1 (MGP_SPRETEiJ_G0016181) #29	Lrrc20 (MGP_SPRETEiJ_G0016180) #27	MGP_SPRETEiJ_G0016179	Eif4ebp2 (MGP_SPRETEiJ_G0016178) #25	MGP_SPRETEiJ_G0016177 #22	Nodal (MGP_SPRETEiJ_G0016176) #24	Pald1 (MGP_SPRETEiJ_G0016175) #23	Adamts14 (MGP_SPRETEiJ_G0016174) #21	Tbata (MGP_SPRETEiJ_G0016173) #20	Sgpl1 (MGP_SPRETEiJ_G0016172) #19	Pcbd1 (MGP_SPRETEiJ_G0016171) #18	Unc5b (MGP_SPRETEiJ_G0016170) #16	MGP_SPRETEiJ_G0016169	Gm17455 (MGP_SPRETEiJ_G0016168) #14	Vsir (MGP_SPRETEiJ_G0016167)	Cdh23 (MGP_SPRETEiJ_G0016166) #12	Psap (MGP_SPRETEiJ_G0016165) #11	Chst3 (MGP_SPRETEiJ_G0016164) #10	Spock2 (MGP_SPRETEiJ_G0016163) #9	Ascc1 (MGP_SPRETEiJ_G0016162) #7
Ryukyu mouse	MODERN SPECIES	1	Ddit4 (MGP_CAROLIEiJ_G0015349)	Anapc16 (MGP_CAROLIEiJ_G0015350)	Ascc1 (MGP_CAROLIEiJ_G0015351) #7	Spock2 (MGP_CAROLIEiJ_G0015352) #9	Chst3 (MGP_CAROLIEiJ_G0015353) #10	Psap (MGP_CAROLIEiJ_G0015354) #11	Cdh23 (MGP_CAROLIEiJ_G0015355) #12	MGP_CAROLIEiJ_G0015356 #13	Gm17455 (MGP_CAROLIEiJ_G0015357) #14	MGP_CAROLIEiJ_G0015358 #15	Unc5b (MGP_CAROLIEiJ_G0015359) #16	Pcbd1 (MGP_CAROLIEiJ_G0015360) #18	MGP_CAROLIEiJ_G0015361 #19	Tbata (MGP_CAROLIEiJ_G0015362) #20	Adamts14 (MGP_CAROLIEiJ_G0015363) #21	Prf1 (MGP_CAROLIEiJ_G0015364) #22	Pald1 (MGP_CAROLIEiJ_G0015365) #23	Nodal (MGP_CAROLIEiJ_G0015366) #24	Eif4ebp2 (MGP_CAROLIEiJ_G0015367) #25	MGP_CAROLIEiJ_G0015368	Lrrc20 (MGP_CAROLIEiJ_G0015369) #27	Npffr1 (MGP_CAROLIEiJ_G0015370) #29	Ppa1 (MGP_CAROLIEiJ_G0015371) #30	Sar1a (MGP_CAROLIEiJ_G0015372) #31	Tysnd1 (MGP_CAROLIEiJ_G0015373) #32	Aifm2 (MGP_CAROLIEiJ_G0015374) #33	Macroh2a2 (MGP_CAROLIEiJ_G0015375) #34	Col13a1 (MGP_CAROLIEiJ_G0015376) #35	Fam241b (MGP_CAROLIEiJ_G0015377)	Neurog3 (MGP_CAROLIEiJ_G0015378) #37	Tspan15 (MGP_CAROLIEiJ_G0015379)
Shrew mouse	MODERN SPECIES	22	Ddit4 (MGP_PahariEiJ_G0030765)	Anapc16 (MGP_PahariEiJ_G0030766)	Ascc1 (MGP_PahariEiJ_G0030767) #7	Spock2 (MGP_PahariEiJ_G0030768) #9	Chst3 (MGP_PahariEiJ_G0030769) #10	Psap (MGP_PahariEiJ_G0030770) #11	Cdh23 (MGP_PahariEiJ_G0030771) #12	MGP_PahariEiJ_G0030772 #13	Gm17455 (MGP_PahariEiJ_G0030773) #14	Slc29a3 (MGP_PahariEiJ_G0030774) #15	Unc5b (MGP_PahariEiJ_G0030775) #16	Pcbd1 (MGP_PahariEiJ_G0030776) #18	Sgpl1 (MGP_PahariEiJ_G0030777) #19	Tbata (MGP_PahariEiJ_G0030778) #20	Adamts14 (MGP_PahariEiJ_G0030779) #21	Prf1 (MGP_PahariEiJ_G0030780) #22	Pald1 (MGP_PahariEiJ_G0030781) #23	Nodal (MGP_PahariEiJ_G0030782) #24	Eif4ebp2 (MGP_PahariEiJ_G0030783) #25	MGP_PahariEiJ_G0030784	Lrrc20 (MGP_PahariEiJ_G0030785) #27	Npffr1 (MGP_PahariEiJ_G0030786) #29	Ppa1 (MGP_PahariEiJ_G0030787) #30	Sar1a (MGP_PahariEiJ_G0030788) #31	Tysnd1 (MGP_PahariEiJ_G0030789) #32	Aifm2 (MGP_PahariEiJ_G0030790) #33	Macroh2a2 (MGP_PahariEiJ_G0030791) #34	Col13a1 (MGP_PahariEiJ_G0030792) #35	MGP_PahariEiJ_G0030793 #36	Neurog3 (MGP_PahariEiJ_G0030794) #37	Tspan15 (MGP_PahariEiJ_G0030795)
Cricetidae	ANCESTRAL SPECIES	9	ENSGT00390000018109	ENSGT00390000018119 #7	ENSGT00940000157107 #9	ENSGT00940000161045 #10	ENSGT00940000156695.f #11	ENSGT00940000163256	ENSGT00940000163216 #13	ENSGT00490000043902 #14	ENSGT00940000155245 #12	ENSGT00950000182898.a.a.b #15	ENSGT00950000182815.a.a.a.b #16	ENSGT00390000007221.a.b #18	ENSGT00390000000046 #19	ENSGT00510000048896 #20	ENSGT00940000158426 #21	ENSGT00530000063725 #22	ENSGT00390000005448 #23	ENSGT00940000160223 #24	ENSGT00940000155342 #25	ENSGT00730000111199 #27	ENSGT01070000253744.b.a.b #29	ENSGT00390000017004.a.b #30	ENSGT00940000155276 #31	ENSGT00390000014627 #32	ENSGT00390000004582 #33	ENSGT00940000158120.d #34	ENSGT00940000154865 #35	ENSGT00940000154340.B #36	ENSGT00940000163077 #37	ENSGT00940000157973	ENSGT00940000155512
Cricetinae	ANCESTRAL SPECIES	24	ENSGT00530000063652.b	ENSGT00390000018109	ENSGT00390000018119 #7	ENSGT00940000157107 #9	ENSGT00940000161045 #10	ENSGT00940000156695.f #11	ENSGT00940000163216 #13	ENSGT00490000043902 #14	ENSGT00940000155245 #12	ENSGT00950000182898.a.a.b #15	ENSGT00950000182815.a.a.a.b #16	ENSGT00390000007221.a.b #18	ENSGT00390000000046 #19	ENSGT00510000048896 #20	ENSGT00940000158426 #21	ENSGT00530000063725 #22	ENSGT00390000005448 #23	ENSGT00940000160223 #24	ENSGT00940000155342 #25	ENSGT00730000111199 #27	ENSGT01070000253744.b.a.b #29	ENSGT00390000017004.a.b #30	ENSGT00940000155276 #31	ENSGT00390000014627 #32	ENSGT00390000004582 #33	ENSGT00940000158120.d #34	ENSGT00940000154865 #35	ENSGT00940000154340.B #36	ENSGT00940000163077 #37	ENSGT00940000157973	ENSGT00940000155512
Chinese hamster chok1gshd	MODERN SPECIES	204	Ddit4 (ENSCGRG00001003691)	Anapc16 (ENSCGRG00001022181)	Ascc1 (ENSCGRG00001016548) #7	Spock2 (ENSCGRG00001018408) #9	Chst3 (ENSCGRG00001008453) #10	Psap (ENSCGRG00001012506) #11	ENSCGRG00001009572 #13	Gm17455 (ENSCGRG00001005354) #14	Cdh23 (ENSCGRG00001019491) #12	Slc29a3 (ENSCGRG00001023912) #15	Unc5b (ENSCGRG00001011420) #16	Pcbd1 (ENSCGRG00001000360) #18	Sgpl1 (ENSCGRG00001016963) #19	Tbata (ENSCGRG00001015076) #20	Adamts14 (ENSCGRG00001018335) #21	Prf1 (ENSCGRG00001016938) #22	Pald1 (ENSCGRG00001024676) #23	ENSCGRG00001010371	Nodal (ENSCGRG00001000105) #24	Eif4ebp2 (ENSCGRG00001010892) #25	Lrrc20 (ENSCGRG00001016697) #27	Npffr1 (ENSCGRG00001024879) #29	Ppa1 (ENSCGRG00001021182) #30	Sar1a (ENSCGRG00001016695) #31	Tysnd1 (ENSCGRG00001018209) #32	Aifm2 (ENSCGRG00001022294) #33	Macroh2a2 (ENSCGRG00001009991) #34	Col13a1 (ENSCGRG00001022499) #35	ENSCGRG00001012416 #36	Neurog3 (ENSCGRG00001010173) #37	Tspan15 (ENSCGRG00001001046)
Golden Hamster	MODERN SPECIES	641	Ddit4 (ENSMAUG00000010020)	Anapc16 (ENSMAUG00000009889)	ENSMAUG00000009049 #7	Spock2 (ENSMAUG00000010578) #9	Chst3 (ENSMAUG00000009425) #10	Psap (ENSMAUG00000017372) #11	ENSMAUG00000015706 #13	Gm17455 (ENSMAUG00000015274) #14	Cdh23 (ENSMAUG00000016882) #12	Slc29a3 (ENSMAUG00000011308) #15	Unc5b (ENSMAUG00000011675) #16	Pcbd1 (ENSMAUG00000009097) #18	Sgpl1 (ENSMAUG00000008580) #19	Tbata (ENSMAUG00000013552) #20	Adamts14 (ENSMAUG00000010108) #21	Prf1 (ENSMAUG00000003466) #22	Pald1 (ENSMAUG00000010402) #23	Nodal (ENSMAUG00000012281) #24	Eif4ebp2 (ENSMAUG00000012220) #25	Lrrc20 (ENSMAUG00000011702) #27	Npffr1 (ENSMAUG00000006691) #29	Ppa1 (ENSMAUG00000008277) #30	Sar1a (ENSMAUG00000005624) #31	Tysnd1 (ENSMAUG00000010004) #32	Aifm2 (ENSMAUG00000009547) #33	Macroh2a2 (ENSMAUG00000015234) #34	Col13a1 (ENSMAUG00000007217) #35	ENSMAUG00000006808 #36	Neurog3 (ENSMAUG00000010759) #37	Tspan15 (ENSMAUG00000009085)	Tacr2 (ENSMAUG00000008248)
Cricetidae_B	ANCESTRAL SPECIES	12	ENSGT00530000063652.b	ENSGT00390000018109	ENSGT00390000018119 #7	ENSGT00940000157107 #9	ENSGT00940000161045 #10	ENSGT00940000156695.f #11	ENSGT00940000163256	ENSGT00490000043902 #14	ENSGT00940000155245 #12	ENSGT00950000182898.a.a.b #15	ENSGT00950000182815.a.a.a.b #16	ENSGT00390000007221.a.b #18	ENSGT00390000000046 #19	ENSGT00510000048896 #20	ENSGT00940000158426 #21	ENSGT00530000063725 #22	ENSGT00390000005448 #23	ENSGT00940000160223 #24	ENSGT00940000155342 #25	ENSGT00730000111199 #27	ENSGT01070000253744.b.a.b #29	ENSGT00390000017004.a.b #30	ENSGT00940000155276 #31	ENSGT00390000014627 #32	ENSGT00390000004582 #33	ENSGT00940000158120.d #34	ENSGT00940000154865 #35	ENSGT00940000154340.B #36	ENSGT00940000163077 #37	ENSGT00940000157973	ENSGT00940000155512
Prairie vole	MODERN SPECIES	352	Ddit4 (ENSMOCG00000001946)	Anapc16 (ENSMOCG00000022477)	Ascc1 (ENSMOCG00000007733) #7	Spock2 (ENSMOCG00000012358) #9	Chst3 (ENSMOCG00000003237) #10	Psap (ENSMOCG00000018724) #11	Cdh23 (ENSMOCG00000019639) #12	ENSMOCG00000009232 #13	Gm17455 (ENSMOCG00000014295) #14	Slc29a3 (ENSMOCG00000008126) #15	Unc5b (ENSMOCG00000002975) #16	Pcbd1 (ENSMOCG00000013382) #18	Sgpl1 (ENSMOCG00000021262) #19	Tbata (ENSMOCG00000012212) #20	Adamts14 (ENSMOCG00000001616) #21	Prf1 (ENSMOCG00000001516) #22	Pald1 (ENSMOCG00000013177) #23	Nodal (ENSMOCG00000002962) #24	Eif4ebp2 (ENSMOCG00000013203) #25	Lrrc20 (ENSMOCG00000015935) #27	Npffr1 (ENSMOCG00000000219) #29	Ppa1 (ENSMOCG00000016579) #30	ENSMOCG00000004220	Sar1a (ENSMOCG00000018004) #31	Tysnd1 (ENSMOCG00000012441) #32	Aifm2 (ENSMOCG00000014368) #33	Macroh2a2 (ENSMOCG00000017359) #34	Col13a1 (ENSMOCG00000014440) #35	ENSMOCG00000011147 #36	Neurog3 (ENSMOCG00000004110) #37	Tspan15 (ENSMOCG00000016518)
Northern American deer mouse	MODERN SPECIES	13	Ddit4 (ENSPEMG00000025339)	Anapc16 (ENSPEMG00000011038)	Ascc1 (ENSPEMG00000002244) #7	Spock2 (ENSPEMG00000008616) #9	Chst3 (ENSPEMG00000017475) #10	Psap (ENSPEMG00000009902) #11	Vsir (ENSPEMG00000010452)	Gm17455 (ENSPEMG00000008830) #14	Cdh23 (ENSPEMG00000001083) #12	Slc29a3 (ENSPEMG00000013214) #15	Unc5b (ENSPEMG00000000250) #16	Pcbd1 (ENSPEMG00000027007) #18	Sgpl1 (ENSPEMG00000012173) #19	ENSPEMG00000015979 #20	Adamts14 (ENSPEMG00000010369) #21	Prf1 (ENSPEMG00000016679) #22	Pald1 (ENSPEMG00000013431) #23	Nodal (ENSPEMG00000020412) #24	Eif4ebp2 (ENSPEMG00000020578) #25	ENSPEMG00000029846	Lrrc20 (ENSPEMG00000027048) #27	Npffr1 (ENSPEMG00000000515) #29	Ppa1 (ENSPEMG00000014364) #30	Sar1a (ENSPEMG00000025677) #31	Tysnd1 (ENSPEMG00000007945) #32	Aifm2 (ENSPEMG00000011813) #33	Macroh2a2 (ENSPEMG00000012753) #34	Col13a1 (ENSPEMG00000004697) #35	Neurog3 (ENSPEMG00000014595) #37	ENSPEMG00000010091 #36	Tspan15 (ENSPEMG00000015161)
Upper Galilee mountains blind mole rat	MODERN SPECIES	958	Ddit4 (ENSNGAG00000011547)	Anapc16 (ENSNGAG00000014647)	Ascc1 (ENSNGAG00000022999) #7	Spock2 (ENSNGAG00000001291) #9	Chst3 (ENSNGAG00000017418) #10	Psap (ENSNGAG00000012932) #11	Cdh23 (ENSNGAG00000021359) #12	Vsir (ENSNGAG00000021691)	Gm17455 (ENSNGAG00000012878) #14	Slc29a3 (ENSNGAG00000016308) #15	Unc5b (ENSNGAG00000022063) #16	Pcbd1 (ENSNGAG00000022293) #18	Sgpl1 (ENSNGAG00000022822) #19	Tbata (ENSNGAG00000004249) #20	Adamts14 (ENSNGAG00000013462) #21	Prf1 (ENSNGAG00000023694) #22
Lesser Egyptian jerboa	MODERN SPECIES	64	Ddit4 (ENSJJAG00000020327)	ENSJJAG00000015840	Ascc1 (ENSJJAG00000009829) #7	Spock2 (ENSJJAG00000010222) #9	Chst3 (ENSJJAG00000004645) #10	Psap (ENSJJAG00000013531) #11	ENSJJAG00000022902 #12	Vsir (ENSJJAG00000006974)	ENSJJAG00000010722 #12	Slc29a3 (ENSJJAG00000011985) #15	Unc5b (ENSJJAG00000017897) #16	Pcbd1 (ENSJJAG00000023298) #18	Sgpl1 (ENSJJAG00000006888) #19	Tbata (ENSJJAG00000023471) #20	Adamts14 (ENSJJAG00000021896) #21	Prf1 (ENSJJAG00000005807) #22	Pald1 (ENSJJAG00000015978) #23	Nodal (ENSJJAG00000019905) #24	Eif4ebp2 (ENSJJAG00000017843) #25	Lrrc20 (ENSJJAG00000021553) #27	Npffr1 (ENSJJAG00000024420) #29	Ppa1 (ENSJJAG00000021599) #30	ENSJJAG00000016603 #31	ENSJJAG00000011394 #32	Aifm2 (ENSJJAG00000013734) #33	Macroh2a2 (ENSJJAG00000015164) #34	Col13a1 (ENSJJAG00000011939) #35	Neurog3 (ENSJJAG00000010523) #37	ENSJJAG00000007347 #36	Tspan15 (ENSJJAG00000023437)	Tacr2 (ENSJJAG00000023714)
Kangaroo rat	MODERN SPECIES	353									ENSDORG00000028847	ENSDORG00000030174	ENSDORG00000014215	Pcbd1 (ENSDORG00000002332) #18	Sgpl1 (ENSDORG00000015465) #19	Tbata (ENSDORG00000012998) #20	Adamts14 (ENSDORG00000002917) #21	Prf1 (ENSDORG00000009746) #22	Pald1 (ENSDORG00000009740) #23	Nodal (ENSDORG00000011307) #24	Eif4ebp2 (ENSDORG00000025031) #25	Lrrc20 (ENSDORG00000015982) #27	Npffr1 (ENSDORG00000006413) #29	Ppa1 (ENSDORG00000006412) #30	ENSDORG00000023465 #31	Tysnd1 (ENSDORG00000016309) #32	ENSDORG00000028507	Aifm2 (ENSDORG00000011223) #33	Macroh2a2 (ENSDORG00000011220) #34	Col13a1 (ENSDORG00000007218) #35	ENSDORG00000024649 #36	Tspan15 (ENSDORG00000008464)	Tacr2 (ENSDORG00000015619)
Rodentia_A	ANCESTRAL SPECIES	15	ENSGT00530000063652.b	ENSGT00390000018109	ENSGT00390000018119 #7	ENSGT00940000157107 #9	ENSGT00940000161045 #10	ENSGT00940000156695.f #11	ENSGT00940000155245 #12	ENSGT00940000163256	ENSGT00490000043902 #14	ENSGT00950000182898.a.a.b #15	ENSGT00950000182815.a.a.a.b #16	ENSGT00390000007221.a.b #18	ENSGT00390000000046 #19	ENSGT00510000048896 #20	ENSGT00940000158426 #21	ENSGT00530000063725 #22	ENSGT00390000005448 #23	ENSGT00940000160223 #24	ENSGT00940000155342 #25	ENSGT00730000111199 #27	ENSGT01070000253744.b.a.b #29	ENSGT00390000017004.a.b #30	ENSGT00940000155276 #31	ENSGT00910000146657	ENSGT00390000014627 #32	ENSGT00390000004582 #33	ENSGT00940000158120 #34	ENSGT00940000154865 #35	ENSGT00940000154340.B #36	ENSGT00940000163077 #37	ENSGT00940000157973
Sciuridae	ANCESTRAL SPECIES	30	ENSGT00530000063652.b	ENSGT00390000018109	ENSGT00390000018119 #7	ENSGT00940000157107 #9	ENSGT00940000161045 #10	ENSGT00940000156695.f #11	ENSGT00940000155245 #12	ENSGT00940000163256	ENSGT00490000043902 #14	ENSGT00950000182898.a.a.b #15	ENSGT00950000182815.a.a.a.b #16	ENSGT00390000007221.a.b #18	ENSGT00390000000046 #19	ENSGT00510000048896 #20	ENSGT00940000158426 #21	ENSGT00530000063725 #22	ENSGT00390000005448 #23	ENSGT00940000160223 #24	ENSGT00940000155342 #25	ENSGT00730000111199 #27	ENSGT01070000253744.b.a.b #29	ENSGT00390000017004.a.b #30	ENSGT00940000155276 #31	ENSGT00910000146657	ENSGT00390000014627 #32	ENSGT00390000004582 #33	ENSGT00940000158120 #34	ENSGT00940000154865 #35	ENSGT00940000154340.B #36	ENSGT00940000163077 #37	ENSGT00940000157973
Marmotini	ANCESTRAL SPECIES	44	ENSGT00530000063652.b	ENSGT00390000018109	ENSGT00390000018119 #7	ENSGT00940000157107 #9	ENSGT00940000161045 #10	ENSGT00940000156695.f #11	ENSGT00940000155245 #12	ENSGT00940000163256	ENSGT00490000043902 #14	ENSGT00950000182898.a.a.b #15	ENSGT00950000182815.a.a.a.b #16	ENSGT00390000007221.a.b #18	ENSGT00390000000046 #19	ENSGT00510000048896 #20	ENSGT00940000158426 #21	ENSGT00530000063725 #22	ENSGT00390000005448 #23	ENSGT00940000160223 #24	ENSGT00940000155342 #25	ENSGT00730000111199 #27	ENSGT01070000253744.b.a.b #29	ENSGT00390000017004.a.b #30	ENSGT00940000155276 #31	ENSGT00910000146657	ENSGT00390000014627 #32	ENSGT00390000004582 #33	ENSGT00940000158120 #34	ENSGT00940000154865 #35	ENSGT00940000154340.B #36	ENSGT00940000163077 #37	ENSGT00940000157973
Alpin marmot	MODERN SPECIES	68	ANAPC16 (ENSMMMG00000005694)	ASCC1 (ENSMMMG00000005702) #7	SPOCK2 (ENSMMMG00000005722) #9	CHST3 (ENSMMMG00000005753) #10	PSAP (ENSMMMG00000005760) #11	CDH23 (ENSMMMG00000005801) #12	VSIR (ENSMMMG00000006842)	C10orf105 (ENSMMMG00000006857) #14	ENSMMMG00000006858	SLC29A3 (ENSMMMG00000006860) #15	UNC5B (ENSMMMG00000006874) #16	PCBD1 (ENSMMMG00000006937) #18	SGPL1 (ENSMMMG00000006959) #19	ENSMMMG00000007003	ADAMTS14 (ENSMMMG00000007016) #21	PRF1 (ENSMMMG00000007138) #22	PALD1 (ENSMMMG00000007147) #23	NODAL (ENSMMMG00000007178) #24	EIF4EBP2 (ENSMMMG00000007182) #25	LRRC20 (ENSMMMG00000007191) #27	NPFFR1 (ENSMMMG00000007206) #29	PPA1 (ENSMMMG00000007219) #30	SAR1A (ENSMMMG00000007230) #31	ENSMMMG00000007241	TYSND1 (ENSMMMG00000007246) #32	AIFM2 (ENSMMMG00000007255) #33	MACROH2A2 (ENSMMMG00000007272) #34	FAM241B (ENSMMMG00000007408) #36	NEUROG3 (ENSMMMG00000007424) #37	TSPAN15 (ENSMMMG00000007427)	TACR2 (ENSMMMG00000007437)
Marmotini_b	ANCESTRAL SPECIES	53	ENSGT00530000063652.b	ENSGT00390000018109	ENSGT00390000018119 #7	ENSGT00940000157107 #9	ENSGT00940000161045 #10	ENSGT00940000156695.f #11	ENSGT00940000155245 #12	ENSGT00940000163256	ENSGT00490000043902 #14	ENSGT00950000182898.a.a.b #15	ENSGT00950000182815.a.a.a.b #16	ENSGT00390000007221.a.b #18	ENSGT00390000000046 #19	ENSGT00510000048896 #20	ENSGT00940000158426 #21	ENSGT00530000063725 #22	ENSGT00390000005448 #23	ENSGT00940000160223 #24	ENSGT00940000155342 #25	ENSGT00730000111199 #27	ENSGT01070000253744.b.a.b #29	ENSGT00390000017004.a.b #30	ENSGT00940000155276 #31	ENSGT00910000146657	ENSGT00390000014627 #32	ENSGT00390000004582 #33	ENSGT00940000158120 #34	ENSGT00940000154865 #35	ENSGT00940000154340.B #36	ENSGT00940000163077 #37	ENSGT00940000157973
Squirrel	MODERN SPECIES	121	DNAJB12 (ENSSTOG00000000699)	DDIT4 (ENSSTOG00000000695)	ANAPC16 (ENSSTOG00000000693)	ASCC1 (ENSSTOG00000000689) #7	SPOCK2 (ENSSTOG00000006388) #9	CHST3 (ENSSTOG00000027962) #10	PSAP (ENSSTOG00000007400) #11	CDH23 (ENSSTOG00000003414) #12	C10orf105 (ENSSTOG00000021747) #14	SLC29A3 (ENSSTOG00000008914) #15	UNC5B (ENSSTOG00000020873) #16	PCBD1 (ENSSTOG00000002370) #18	SGPL1 (ENSSTOG00000002353) #19	TBATA (ENSSTOG00000022281) #20	ADAMTS14 (ENSSTOG00000002932) #21	PRF1 (ENSSTOG00000012973) #22	PALD1 (ENSSTOG00000012949) #23	NODAL (ENSSTOG00000012946) #24	EIF4EBP2 (ENSSTOG00000012937) #25	LRRC20 (ENSSTOG00000025273) #27	NPFFR1 (ENSSTOG00000021939) #29	PPA1 (ENSSTOG00000030397) #30	SAR1A (ENSSTOG00000012780) #31	TYSND1 (ENSSTOG00000019783) #32	AIFM2 (ENSSTOG00000012754) #33	MACROH2A2 (ENSSTOG00000012745) #34	COL13A1 (ENSSTOG00000012691) #35	FAM241B (ENSSTOG00000021554) #36	NEUROG3 (ENSSTOG00000026959) #37	TSPAN15 (ENSSTOG00000002523)	TACR2 (ENSSTOG00000003412)
Arctic ground squirrel	MODERN SPECIES	326	DDIT4 (ENSUPAG00010003111)	ANAPC16 (ENSUPAG00010003119)	ASCC1 (ENSUPAG00010003174) #7	SPOCK2 (ENSUPAG00010003201) #9	CHST3 (ENSUPAG00010003213) #10	PSAP (ENSUPAG00010003217) #11	CDH23 (ENSUPAG00010003250) #12	VSIR (ENSUPAG00010004213)	C10orf105 (ENSUPAG00010004231) #14	SLC29A3 (ENSUPAG00010004236) #15	UNC5B (ENSUPAG00010004261) #16	PCBD1 (ENSUPAG00010004314) #18	SGPL1 (ENSUPAG00010004324) #19	ENSUPAG00010004334	ADAMTS14 (ENSUPAG00010004339) #21	PRF1 (ENSUPAG00010004386) #22	PALD1 (ENSUPAG00010004405) #23	NODAL (ENSUPAG00010004434) #24	EIF4EBP2 (ENSUPAG00010004443) #25	LRRC20 (ENSUPAG00010004461) #27	NPFFR1 (ENSUPAG00010004476) #29	PPA1 (ENSUPAG00010004491) #30	SAR1A (ENSUPAG00010004509) #31	ENSUPAG00010004518	TYSND1 (ENSUPAG00010004522) #32	AIFM2 (ENSUPAG00010004526) #33	MACROH2A2 (ENSUPAG00010004534) #34
Eurasian red squirrel	MODERN SPECIES	13	ANAPC16 (ENSSVLG00005018642)	ENSSVLG00005018692 #7	SPOCK2 (ENSSVLG00005018765) #9	CHST3 (ENSSVLG00005018878) #10	PSAP (ENSSVLG00005018926) #11	CDH23 (ENSSVLG00005019200) #12	ENSSVLG00005020446 #13	C10orf105 (ENSSVLG00005020469) #14	SLC29A3 (ENSSVLG00005020492) #15	UNC5B (ENSSVLG00005020547) #16	PCBD1 (ENSSVLG00005020600) #18	SGPL1 (ENSSVLG00005020639) #19	ENSSVLG00005020680	TBATA (ENSSVLG00005020718) #20	ADAMTS14 (ENSSVLG00005020794) #21	PRF1 (ENSSVLG00005020825) #22	PALD1 (ENSSVLG00005020872) #23	NODAL (ENSSVLG00005021040) #24	EIF4EBP2 (ENSSVLG00005000187) #25	ENSSVLG00005000204	LRRC20 (ENSSVLG00005000247) #27	NPFFR1 (ENSSVLG00005000275) #29	PPA1 (ENSSVLG00005000334) #30	SAR1A (ENSSVLG00005000375) #31	TYSND1 (ENSSVLG00005000412) #32	AIFM2 (ENSSVLG00005000439) #33	MACROH2A2 (ENSSVLG00005000480) #34	COL13A1 (ENSSVLG00005001757) #35	FAM241B (ENSSVLG00005003439) #36	NEUROG3 (ENSSVLG00005003460) #37	TSPAN15 (ENSSVLG00005003495)
Hystricomorpha	ANCESTRAL SPECIES	1	ENSGT00530000063652.b	ENSGT00390000018109	ENSGT00390000018119 #7	ENSGT00940000157107 #9	ENSGT00940000161045 #10	ENSGT00940000156695.f #11	ENSGT00940000163256	ENSGT00490000043902 #14	ENSGT00940000155245 #12	ENSGT00950000182898.a.a.b #15	ENSGT00950000182815.a.a.a.b #16	ENSGT00390000007221.a.b #18	ENSGT00390000000046 #19	ENSGT00510000048896 #20	ENSGT00940000158426 #21	ENSGT00530000063725 #22	ENSGT00390000005448 #23	ENSGT00940000160223 #24	ENSGT00940000155342 #25	ENSGT00730000111199 #27	ENSGT01070000253744.b.a.b #29	ENSGT00390000017004.a.b #30	ENSGT00940000155276 #31	ENSGT00390000014627 #32	ENSGT00390000004582 #33	ENSGT00940000158120 #34	ENSGT00940000154865 #35	ENSGT00940000154340.B #36	ENSGT00940000163077 #37	ENSGT00940000157973	ENSGT00940000155512
Hystricomorpha_a	ANCESTRAL SPECIES	3	ENSGT00530000063652.b	ENSGT00390000018109	ENSGT00390000018119 #7	ENSGT00940000157107 #9	ENSGT00940000161045 #10	ENSGT00940000156695.f #11	ENSGT00940000163216 #13	ENSGT00490000043902 #14	ENSGT00940000155245 #12	ENSGT00950000182898.a.a.b #15	ENSGT00950000182815.a.a.a.b #16	ENSGT00390000007221.a.b #18	ENSGT00390000000046 #19	ENSGT00510000048896 #20	ENSGT00940000158426 #21	ENSGT00530000063725 #22	ENSGT00390000005448 #23	ENSGT00940000160223 #24	ENSGT00940000155342 #25	ENSGT00730000111199 #27	ENSGT01070000253744.b.a.b #29	ENSGT00390000017004.a.b #30	ENSGT00940000155276 #31	ENSGT00390000014627 #32	ENSGT00390000004582 #33	ENSGT00940000158120 #34	ENSGT00940000154865 #35	ENSGT00940000154340.B #36	ENSGT00940000163077 #37	ENSGT00940000157973	ENSGT00940000155512
Guinea pig	MODERN SPECIES	15	DDIT4 (ENSCPOG00000032426)	ANAPC16 (ENSCPOG00000031510)	ASCC1 (ENSCPOG00000001670) #7	SPOCK2 (ENSCPOG00000008188) #9	CHST3 (ENSCPOG00000000477) #10	PSAP (ENSCPOG00000001764) #11	ENSCPOG00000003100 #13	C10orf105 (ENSCPOG00000036163) #14	CDH23 (ENSCPOG00000003086) #12	SLC29A3 (ENSCPOG00000004798) #15	UNC5B (ENSCPOG00000004794) #16	PCBD1 (ENSCPOG00000036733) #18	SGPL1 (ENSCPOG00000012699) #19	TBATA (ENSCPOG00000012696) #20	ADAMTS14 (ENSCPOG00000012687) #21	PRF1 (ENSCPOG00000033631) #22	PALD1 (ENSCPOG00000027030) #23	NODAL (ENSCPOG00000025772) #24	EIF4EBP2 (ENSCPOG00000039594) #25	LRRC20 (ENSCPOG00000034939) #27	NPFFR1 (ENSCPOG00000019374) #29	PPA1 (ENSCPOG00000014023) #30	SAR1A (ENSCPOG00000032583) #31	TYSND1 (ENSCPOG00000006334) #32	AIFM2 (ENSCPOG00000034398) #33	MACROH2A2 (ENSCPOG00000032624) #34	COL13A1 (ENSCPOG00000002575) #35	FAM241B (ENSCPOG00000005444) #36	TSPAN15 (ENSCPOG00000006015)	TACR2 (ENSCPOG00000006011)	HK1 (ENSCPOG00000006004)
Hystricomorpha_b	ANCESTRAL SPECIES	3	ENSGT00530000063652.b	ENSGT00390000018109	ENSGT00390000018119 #7	ENSGT00940000157107 #9	ENSGT00940000161045 #10	ENSGT00940000156695.f #11	ENSGT00940000155245 #12	ENSGT00940000163256	ENSGT00490000043902 #14	ENSGT00950000182898.a.a.b #15	ENSGT00950000182815.a.a.a.b #16	ENSGT00390000007221.a.b #18	ENSGT00390000000046 #19	ENSGT00510000048896 #20	ENSGT00940000158426 #21	ENSGT00530000063725 #22	ENSGT00390000005448 #23	ENSGT00940000160223 #24	ENSGT00940000155342 #25	ENSGT00730000111199 #27	ENSGT01070000253744.b.a.b #29	ENSGT00390000017004.a.b #30	ENSGT00940000155276 #31	ENSGT00390000014627 #32	ENSGT00390000004582 #33	ENSGT00940000158120 #34	ENSGT00940000154865 #35	ENSGT00940000154340.B #36	ENSGT00940000163077 #37	ENSGT00940000157973	ENSGT00940000155512
Degu	MODERN SPECIES	46	ENSODEG00000014243	ASCC1 (ENSODEG00000013709) #7	SPOCK2 (ENSODEG00000014874) #9	CHST3 (ENSODEG00000014161) #10	ENSODEG00000015134 #11	ENSODEG00000013740 #12	VSIR (ENSODEG00000013604)	C10orf105 (ENSODEG00000014972) #14	ENSODEG00000013946 #12	SLC29A3 (ENSODEG00000014519) #15	UNC5B (ENSODEG00000014463) #16	PCBD1 (ENSODEG00000014762) #18	SGPL1 (ENSODEG00000015118) #19	TBATA (ENSODEG00000014113) #20	ADAMTS14 (ENSODEG00000013691) #21	PRF1 (ENSODEG00000015116) #22	ENSODEG00000014438	ENSODEG00000013357	PALD1 (ENSODEG00000013788) #23	NODAL (ENSODEG00000013687) #24	EIF4EBP2 (ENSODEG00000014467) #25	ENSODEG00000014893	LRRC20 (ENSODEG00000014868) #27	NPFFR1 (ENSODEG00000013333) #29	ENSODEG00000016109 #30	SAR1A (ENSODEG00000014517) #31	TYSND1 (ENSODEG00000013729) #32	AIFM2 (ENSODEG00000012876) #33	MACROH2A2 (ENSODEG00000013645) #34	COL13A1 (ENSODEG00000013027) #35	FAM241B (ENSODEG00000014520) #36
Long-tailed chinchilla	MODERN SPECIES	144	DDIT4 (ENSCLAG00000016774)	ANAPC16 (ENSCLAG00000013434)	ASCC1 (ENSCLAG00000012962) #7	SPOCK2 (ENSCLAG00000013486) #9	CHST3 (ENSCLAG00000016693) #10	ENSCLAG00000014700 #11	CDH23 (ENSCLAG00000014323) #12	ENSCLAG00000013972 #13	C10orf105 (ENSCLAG00000017366) #14	SLC29A3 (ENSCLAG00000016823) #15	UNC5B (ENSCLAG00000011971) #16	PCBD1 (ENSCLAG00000012139) #18	SGPL1 (ENSCLAG00000011490) #19	TBATA (ENSCLAG00000011271) #20	ADAMTS14 (ENSCLAG00000011627) #21	PRF1 (ENSCLAG00000014811) #22	PALD1 (ENSCLAG00000010318) #23	NODAL (ENSCLAG00000016370) #24	EIF4EBP2 (ENSCLAG00000013838) #25	LRRC20 (ENSCLAG00000013887) #27	NPFFR1 (ENSCLAG00000012308) #29	PPA1 (ENSCLAG00000013732) #30	ENSCLAG00000014324	SAR1A (ENSCLAG00000012839) #31	TYSND1 (ENSCLAG00000013018) #32	AIFM2 (ENSCLAG00000014328) #33	MACROH2A2 (ENSCLAG00000014003) #34	COL13A1 (ENSCLAG00000013255) #35	FAM241B (ENSCLAG00000011820) #36	TSPAN15 (ENSCLAG00000011763)	TACR2 (ENSCLAG00000017007)
Naked mole-rat female	MODERN SPECIES	4	ASCC1 (ENSHGLG00000033774) #7	SPOCK2 (ENSHGLG00000012068) #9	ENSHGLG00000011871	CHST3 (ENSHGLG00000011547) #10	PSAP (ENSHGLG00000011266) #11	ENSHGLG00000015060 #12	VSIR (ENSHGLG00000019217)	C10orf105 (ENSHGLG00000019204) #14	SLC29A3 (ENSHGLG00000014732) #15	UNC5B (ENSHGLG00000014440) #16	ENSHGLG00000014345	PCBD1 (ENSHGLG00000049704) #18	ENSHGLG00000013376 #19	TBATA (ENSHGLG00000012813) #20	ADAMTS14 (ENSHGLG00000012535) #21	PRF1 (ENSHGLG00000048182) #22	ENSHGLG00000042588 #23	NODAL (ENSHGLG00000011988) #24	ENSHGLG00000011838 #25	LRRC20 (ENSHGLG00000039563) #27	NPFFR1 (ENSHGLG00000034434) #29	PPA1 (ENSHGLG00000011100) #30	SAR1A (ENSHGLG00000050442) #31	TYSND1 (ENSHGLG00000039292) #32	Aifm2 (ENSHGLG00000016729) #33	MACROH2A2 (ENSHGLG00000044331) #34	COL13A1 (ENSHGLG00000014097) #35	FAM241B (ENSHGLG00000036287) #36	NEUROG3 (ENSHGLG00000048434) #37	TSPAN15 (ENSHGLG00000040517)	TACR2 (ENSHGLG00000012951)
Lagomorpha	ANCESTRAL SPECIES	18	ENSGT00940000155590	ENSGT00530000063652.b	ENSGT00390000018109	ENSGT00390000018119 #7	ENSGT00940000157107 #9	ENSGT00910000147834	ENSGT00940000161045 #10	ENSGT00940000156695.f #11	ENSGT00940000155245 #12	ENSGT00950000182898.a.a.b #15	ENSGT00950000182815.a.a.a.b #16	ENSGT00390000007221.a.b #18	ENSGT00390000000046 #19	ENSGT00510000048896 #20	ENSGT00940000158426 #21	ENSGT00530000063725 #22	ENSGT00390000005448 #23	ENSGT00940000160223 #24	ENSGT00940000155342 #25	ENSGT00730000111199 #27	ENSGT01070000253744.b.a.b #29	ENSGT00390000017004.a.b #30	ENSGT00940000155276 #31	ENSGT00390000014627 #32	ENSGT00390000004582 #33	ENSGT00940000158120 #34	ENSGT00940000154865 #35	ENSGT00940000154340.B #36	ENSGT00940000157973	ENSGT00940000155512	ENSGT00950000182787.A
Rabbit	MODERN SPECIES	9	DDIT4 (ENSOCUG00000016772)	ANAPC16 (ENSOCUG00000016767)	ASCC1 (ENSOCUG00000016753) #7	SPOCK2 (ENSOCUG00000016744) #9	ENSOCUG00000039606	CHST3 (ENSOCUG00000023270) #10	PSAP (ENSOCUG00000016261) #11	CDH23 (ENSOCUG00000016171) #12	VSIR (ENSOCUG00000016252)	C10orf105 (ENSOCUG00000030004) #14	SLC29A3 (ENSOCUG00000006953) #15	UNC5B (ENSOCUG00000006943) #16	PCBD1 (ENSOCUG00000026149) #18	ADAMTS14 (ENSOCUG00000017775) #21	TBATA (ENSOCUG00000017786) #20	PRF1 (ENSOCUG00000006954) #22	PALD1 (ENSOCUG00000024110) #23	NODAL (ENSOCUG00000008685) #24	EIF4EBP2 (ENSOCUG00000003475) #25	LRRC20 (ENSOCUG00000016021) #27	NPFFR1 (ENSOCUG00000016014) #29	PPA1 (ENSOCUG00000016001) #30	SAR1A (ENSOCUG00000004547) #31	AIFM2 (ENSOCUG00000004543) #33	MACROH2A2 (ENSOCUG00000004773) #34	ENSOCUG00000011655 #35	FAM241B (ENSOCUG00000014875) #36	TSPAN15 (ENSOCUG00000013992)	TACR2 (ENSOCUG00000006707)	HK1 (ENSOCUG00000006697)	HKDC1 (ENSOCUG00000004938)
Pika	MODERN SPECIES	96												ENSOPRG00000012693 #18	SGPL1 (ENSOPRG00000012672) #19	TBATA (ENSOPRG00000012655) #20	ADAMTS14 (ENSOPRG00000012623) #21	PRF1 (ENSOPRG00000012621) #22	ENSOPRG00000012595 #23
Tree shrew	MODERN SPECIES	8342																PRF1 (ENSTBEG00000014631) #22
Primates	ANCESTRAL SPECIES	16	ENSGT00940000164185	ENSGT00910000147834	ENSGT00940000161045 #10	ENSGT00940000156695.f #11	ENSGT00940000163216 #13	ENSGT00940000155245 #12	ENSGT00940000163256	ENSGT00900000143735	ENSGT00490000043902 #14	ENSGT00950000182898.a.a.b #15	ENSGT00950000182815.a.a.a.b #16	ENSGT00390000007221.a.b #18	ENSGT00390000000046 #19	ENSGT00510000048896 #20	ENSGT00940000158426 #21	ENSGT00530000063725 #22	ENSGT00390000005448 #23	ENSGT00940000160223 #24	ENSGT00980000202026	ENSGT00940000155342 #25	ENSGT00730000111199 #27	ENSGT01070000253744.b.a.b #29	ENSGT00390000017004.a.b #30	ENSGT00940000155276.x.a #31	ENSGT00910000146657	ENSGT00390000014627 #32	ENSGT00390000004582 #33	ENSGT00940000158120 #34	ENSGT00940000154865 #35	ENSGT00860000135785	ENSGT00940000154340.B #36
Haplorrhini	ANCESTRAL SPECIES	11	ENSGT00940000164185	ENSGT00910000147834	ENSGT00940000161045 #10	ENSGT00940000156695.f #11	ENSGT00940000155245 #12	ENSGT00940000163256	ENSGT00900000143735	ENSGT00940000163216 #13	ENSGT00490000043902 #14	ENSGT00950000182898.a.a.b #15	ENSGT00950000182815.a.a.a.b #16	ENSGT00390000007221.a.b #18	ENSGT00390000000046 #19	ENSGT00510000048896 #20	ENSGT00940000158426 #21	ENSGT00530000063725 #22	ENSGT00390000005448 #23	ENSGT00940000160223 #24	ENSGT00980000202026	ENSGT00940000155342 #25	ENSGT00730000111199 #27	ENSGT01070000253744.b.a.b #29	ENSGT00390000017004.a.b #30	ENSGT00940000155276.x.a #31	ENSGT00390000014627 #32	ENSGT00390000004582 #33	ENSGT00940000158120 #34	ENSGT00940000154865 #35	ENSGT00860000135785	ENSGT00940000154340.B #36	ENSGT00940000163077 #37
Simiiformes	ANCESTRAL SPECIES	17	ENSGT00940000164185	ENSGT00910000147834	ENSGT00940000161045 #10	ENSGT00940000156695.f #11	ENSGT00940000155245 #12	ENSGT00940000163256	ENSGT00900000143735	ENSGT00940000163216 #13	ENSGT00490000043902 #14	ENSGT00950000182898.a.a.b #15	ENSGT00950000182815.a.a.a.b #16	ENSGT00390000007221.a.b #18	ENSGT00390000000046 #19	ENSGT00510000048896 #20	ENSGT00940000158426 #21	ENSGT00530000063725 #22	ENSGT00390000005448 #23	ENSGT00940000160223 #24	ENSGT00940000155342.l #25	ENSGT00980000202026	ENSGT00940000155342.k #25	ENSGT00730000111199 #27	ENSGT01070000253744.b.a.b #29	ENSGT00390000017004.a.b #30	ENSGT00940000155276.x.a.a #31	ENSGT00390000014627 #32	ENSGT00390000004582 #33	ENSGT00940000158120 #34	ENSGT00940000154865 #35	ENSGT00860000135785	ENSGT00940000154340.B #36
Catarrhini	ANCESTRAL SPECIES	18	ENSGT00940000157107 #9	ENSGT00910000147834	ENSGT00910000147223	ENSGT00940000161045 #10	ENSGT00940000156695.f #11	ENSGT00940000155245 #12	ENSGT00940000163256	ENSGT00900000143735	ENSGT00490000043902 #14	ENSGT00950000182898.a.a.b #15	ENSGT00950000182815.a.a.a.b #16	ENSGT00390000007221.a.b #18	ENSGT00390000000046 #19	ENSGT00510000048896 #20	ENSGT00940000158426 #21	ENSGT00530000063725 #22	ENSGT00910000147560	ENSGT00390000005448 #23	ENSGT00940000160223 #24	ENSGT00940000155342.k.a.a #25	ENSGT00980000202026	ENSGT00940000155342.k.b #25	ENSGT00730000111199 #27	ENSGT01070000253744.b.a.b #29	ENSGT00390000017004.a.b.m.a #30	ENSGT00940000155276.x.a.b #31	ENSGT00390000014627 #32	ENSGT00390000004582 #33	ENSGT00940000158120 #34	ENSGT00940000154865 #35	ENSGT00860000135785
Hominoidea	ANCESTRAL SPECIES	11	ENSGT00390000018119 #7	ENSGT00940000157107 #9	ENSGT00910000147223	ENSGT00940000161045 #10	ENSGT00940000156695.f #11	ENSGT00940000155245 #12	ENSGT00940000163256	ENSGT00900000143735	ENSGT00490000043902 #14	ENSGT00950000182898.a.a.b #15	ENSGT00950000182815.a.a.a.b #16	ENSGT00390000007221.a.b #18	ENSGT00390000000046 #19	ENSGT00510000048896 #20	ENSGT00940000158426 #21	ENSGT00530000063725 #22	ENSGT00910000147560	ENSGT00390000005448 #23	ENSGT00940000160223 #24	ENSGT00940000155342.k.b #25	ENSGT00530000063695.b.b	ENSGT00730000111199 #27	ENSGT01070000253744.b.a.b #29	ENSGT00390000017004.a.b.m.a.a #30	ENSGT00940000155276.x.a.a.a #31	ENSGT00390000014627 #32	ENSGT00390000004582 #33	ENSGT00940000158120 #34	ENSGT00940000154865 #35	ENSGT00860000135785	ENSGT00940000154340.B #36
Hominidae	ANCESTRAL SPECIES	13	ENSGT00390000018119 #7	ENSGT00940000157107 #9	ENSGT00910000147223	ENSGT00940000161045 #10	ENSGT00940000156695.f #11	ENSGT00940000155245 #12	ENSGT00940000163256	ENSGT00900000143735	ENSGT00490000043902 #14	ENSGT00950000182898.a.a.b #15	ENSGT00950000182815.a.a.a.b #16	ENSGT00390000007221.a.b #18	ENSGT00390000000046 #19	ENSGT00510000048896 #20	ENSGT00940000158426 #21	ENSGT00530000063725 #22	ENSGT00390000005448 #23	ENSGT00940000160223 #24	ENSGT00940000155342.k.b #25	ENSGT00530000063695.b.b	ENSGT00730000111199 #27	ENSGT01070000253744.b.a.b #29	ENSGT00390000017004.a.b.m.a.a #30	ENSGT00940000155276.x.a.a.a #31	ENSGT00390000014627 #32	ENSGT00390000004582 #33	ENSGT00940000158120 #34	ENSGT00940000154865 #35	ENSGT00860000135785	ENSGT00940000154340.B #36	ENSGT00940000163077 #37
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	17	ENSGT00390000018109	ENSGT00390000018119 #7	ENSGT00940000157107 #9	ENSGT00910000147223	ENSGT00940000161045 #10	ENSGT00940000156695.f #11	ENSGT00940000155245 #12	ENSGT00940000163256	ENSGT00490000043902 #14	ENSGT00950000182898.a.a.b #15	ENSGT00950000182815.a.a.a.b #16	ENSGT00390000007221.a.b #18	ENSGT00390000000046 #19	ENSGT00510000048896 #20	ENSGT00940000158426 #21	ENSGT00530000063725 #22	ENSGT00390000005448 #23	ENSGT00940000160223 #24	ENSGT00940000155342.k.b #25	ENSGT00530000063695.b.a.b	ENSGT00730000111199 #27	ENSGT01070000253744.b.a.b #29	ENSGT00390000017004.a.b.m.a.a #30	ENSGT00940000155276.x.a.a.a #31	ENSGT00390000014627 #32	ENSGT00390000004582 #33	ENSGT00940000158120 #34	ENSGT00940000154865 #35	ENSGT00860000135785	ENSGT00940000154340.B #36	ENSGT00940000163077 #37
Homo/Pan group	ANCESTRAL SPECIES	18	ENSGT00390000018109	ENSGT00390000018119 #7	ENSGT00940000157107 #9	ENSGT00910000147223	ENSGT00940000161045 #10	ENSGT00940000156695.f #11	ENSGT00940000155245 #12	ENSGT00940000163256	ENSGT00490000043902 #14	ENSGT00950000182898.a.a.b #15	ENSGT00950000182815.a.a.a.b #16	ENSGT00390000007221.a.b #18	ENSGT00390000000046 #19	ENSGT00510000048896 #20	ENSGT00940000158426 #21	ENSGT00530000063725 #22	ENSGT00390000005448 #23	ENSGT00940000160223 #24	ENSGT00940000155342.k.b #25	ENSGT00530000063695.b.a.b	ENSGT00730000111199 #27	ENSGT01070000253744.b.a.b #29	ENSGT00390000017004.a.b.m.a.a #30	ENSGT00940000155276.x.a.a.a #31	ENSGT00390000014627 #32	ENSGT00390000004582 #33	ENSGT00940000158120 #34	ENSGT00940000154865 #35	ENSGT00860000135785	ENSGT00940000154340.B #36	ENSGT00940000163077 #37
Pan	ANCESTRAL SPECIES	16	ENSGT00390000018109	ENSGT00390000018119 #7	ENSGT00940000157107 #9	ENSGT00910000147223	ENSGT00940000161045 #10	ENSGT00940000156695.f #11	ENSGT00940000155245 #12	ENSGT00940000163256	ENSGT00490000043902 #14	ENSGT00950000182898.a.a.b #15	ENSGT00950000182815.a.a.a.b #16	ENSGT00390000007221.a.b #18	ENSGT00390000000046 #19	ENSGT00510000048896 #20	ENSGT00940000158426 #21	ENSGT00530000063725 #22	ENSGT00390000005448 #23	ENSGT00940000160223 #24	ENSGT00940000155342.k.b #25	ENSGT00530000063695.b.a.b	ENSGT00730000111199 #27	ENSGT01070000253744.b.a.b #29	ENSGT00390000017004.a.b.m.a.a #30	ENSGT00940000155276.x.a.a.a #31	ENSGT00390000014627 #32	ENSGT00390000004582 #33	ENSGT00940000158120 #34	ENSGT00940000154865 #35	ENSGT00860000135785	ENSGT00940000154340.B #36	ENSGT00940000163077 #37
Bonobo	MODERN SPECIES	1	DDIT4 (ENSPPAG00000026679)	ANAPC16 (ENSPPAG00000039087)	ASCC1 (ENSPPAG00000039805) #7	SPOCK2 (ENSPPAG00000037477) #9	ENSPPAG00000034230	CHST3 (ENSPPAG00000040452) #10	PSAP (ENSPPAG00000036888) #11	VSIR (ENSPPAG00000031574)	CDH23 (ENSPPAG00000030558) #12	SLC29A3 (ENSPPAG00000033339) #15	UNC5B (ENSPPAG00000035322) #16	PCBD1 (ENSPPAG00000038635) #18	SGPL1 (ENSPPAG00000035785) #19	TBATA (ENSPPAG00000041040) #20	ADAMTS14 (ENSPPAG00000027974) #21	PRF1 (ENSPPAG00000041405) #22	PALD1 (ENSPPAG00000035351) #23	NODAL (ENSPPAG00000032411) #24	ENSPPAG00000022070 #25	ENSPPAG00000033857	LRRC20 (ENSPPAG00000040023) #27	ENSPPAG00000040679 #29	PPA1 (ENSPPAG00000031831) #30	SAR1A (ENSPPAG00000031193) #31	TYSND1 (ENSPPAG00000029085) #32	AIFM2 (ENSPPAG00000043435) #33	MACROH2A2 (ENSPPAG00000028027) #34	COL13A1 (ENSPPAG00000043840) #35	ENSPPAG00000042212	FAM241B (ENSPPAG00000034218) #36	NEUROG3 (ENSPPAG00000013680) #37
Chimpanzee	MODERN SPECIES	1	DDIT4 (ENSPTRG00000002611)	ANAPC16 (ENSPTRG00000045745)	ASCC1 (ENSPTRG00000002609) #7	SPOCK2 (ENSPTRG00000002608) #9	CHST3 (ENSPTRG00000002607) #10	PSAP (ENSPTRG00000023687) #11	VSIR (ENSPTRG00000002605)	C10H10orf105 (ENSPTRG00000045172) #14	CDH23 (ENSPTRG00000002603) #12	SLC29A3 (ENSPTRG00000023469) #15	UNC5B (ENSPTRG00000002600) #16	PCBD1 (ENSPTRG00000002599) #18	SGPL1 (ENSPTRG00000002598) #19	TBATA (ENSPTRG00000002597) #20	ADAMTS14 (ENSPTRG00000002596) #21	PRF1 (ENSPTRG00000002595) #22	PALD1 (ENSPTRG00000002594) #23	NODAL (ENSPTRG00000002592) #24	EIF4EBP2 (ENSPTRG00000002590) #25	ENSPTRG00000048298	LRRC20 (ENSPTRG00000002588) #27	NPFFR1 (ENSPTRG00000002586) #29	PPA1 (ENSPTRG00000002585) #30	SAR1A (ENSPTRG00000002584) #31	TYSND1 (ENSPTRG00000002583) #32	AIFM2 (ENSPTRG00000002582) #33	MACROH2A2 (ENSPTRG00000002581) #34	COL13A1 (ENSPTRG00000002579) #35	ENSPTRG00000044676	FAM241B (ENSPTRG00000002577) #36	NEUROG3 (ENSPTRG00000002576) #37
Human	MODERN SPECIES	1	DDIT4 (ENSG00000168209)	ANAPC16 (ENSG00000166295)	ASCC1 (ENSG00000138303) #7	SPOCK2 (ENSG00000107742) #9	CHST3 (ENSG00000122863) #10	PSAP (ENSG00000197746) #11	VSIR (ENSG00000107738)	C10orf105 (ENSG00000214688) #14	CDH23 (ENSG00000107736) #12	SLC29A3 (ENSG00000198246) #15	UNC5B (ENSG00000107731) #16	PCBD1 (ENSG00000166228) #18	SGPL1 (ENSG00000166224) #19	TBATA (ENSG00000166220) #20	ADAMTS14 (ENSG00000138316) #21	PRF1 (ENSG00000180644) #22	PALD1 (ENSG00000107719) #23	NODAL (ENSG00000156574) #24	EIF4EBP2 (ENSG00000148730) #25	LRRC20 (ENSG00000172731) #27	NPFFR1 (ENSG00000148734) #29	PPA1 (ENSG00000180817) #30	SAR1A (ENSG00000079332) #31	TYSND1 (ENSG00000156521) #32	AIFM2 (ENSG00000042286) #33	MACROH2A2 (ENSG00000099284) #34	COL13A1 (ENSG00000197467) #35	FAM241B (ENSG00000171224) #36	NEUROG3 (ENSG00000122859) #37	TSPAN15 (ENSG00000099282)	TACR2 (ENSG00000075073)
Gorilla	MODERN SPECIES	1	ENSGGOG00000007567	ASCC1 (ENSGGOG00000007559) #7	SPOCK2 (ENSGGOG00000023784) #9	ENSGGOG00000036638	CHST3 (ENSGGOG00000043006) #10	PSAP (ENSGGOG00000008433) #11	CDH23 (ENSGGOG00000008379) #12	VSIR (ENSGGOG00000008426)	C10orf105 (ENSGGOG00000037482) #14	SLC29A3 (ENSGGOG00000000803) #15	UNC5B (ENSGGOG00000011623) #16	PCBD1 (ENSGGOG00000013985) #18	SGPL1 (ENSGGOG00000016655) #19	TBATA (ENSGGOG00000012387) #20	ADAMTS14 (ENSGGOG00000012358) #21	PRF1 (ENSGGOG00000001909) #22	PALD1 (ENSGGOG00000004747) #23	NODAL (ENSGGOG00000002581) #24	EIF4EBP2 (ENSGGOG00000036271) #25	ENSGGOG00000042114	LRRC20 (ENSGGOG00000014113) #27	NPFFR1 (ENSGGOG00000014103) #29	PPA1 (ENSGGOG00000016995) #30	ENSGGOG00000037832	SAR1A (ENSGGOG00000024879) #31	TYSND1 (ENSGGOG00000016639) #32	AIFM2 (ENSGGOG00000005951) #33	MACROH2A2 (ENSGGOG00000005947) #34	COL13A1 (ENSGGOG00000005032) #35	FAM241B (ENSGGOG00000002190) #36	NEUROG3 (ENSGGOG00000036451) #37
Orangutan	MODERN SPECIES	1	ANAPC16 (ENSPPYG00000002355)	ENSPPYG00000002356 #7	SPOCK2 (ENSPPYG00000029592) #9	CHST3 (ENSPPYG00000039757) #10	PSAP (ENSPPYG00000002357) #11	CDH23 (ENSPPYG00000002359) #12	VSIR (ENSPPYG00000025864)	ENSPPYG00000032725	C10orf105 (ENSPPYG00000002360) #14	SLC29A3 (ENSPPYG00000002361) #15	UNC5B (ENSPPYG00000002362) #16	PCBD1 (ENSPPYG00000002363) #18	SGPL1 (ENSPPYG00000002364) #19	TBATA (ENSPPYG00000002366) #20	ADAMTS14 (ENSPPYG00000002367) #21	PRF1 (ENSPPYG00000002368) #22	PALD1 (ENSPPYG00000002369) #23	NODAL (ENSPPYG00000002370) #24	EIF4EBP2 (ENSPPYG00000002371) #25	ENSPPYG00000038976	LRRC20 (ENSPPYG00000002372) #27	NPFFR1 (ENSPPYG00000002373) #29	PPA1 (ENSPPYG00000029405) #30	SAR1A (ENSPPYG00000002374) #31	TYSND1 (ENSPPYG00000002375) #32	AIFM2 (ENSPPYG00000002376) #33	MACROH2A2 (ENSPPYG00000002377) #34	COL13A1 (ENSPPYG00000002378) #35	ENSPPYG00000002379 #36	NEUROG3 (ENSPPYG00000002380) #37	TSPAN15 (ENSPPYG00000002381)
Gibbon	MODERN SPECIES	8	DNAJB12 (ENSNLEG00000016428)	DDIT4 (ENSNLEG00000016416)	ANAPC16 (ENSNLEG00000016411)	ASCC1 (ENSNLEG00000016392) #7	SPOCK2 (ENSNLEG00000016379) #9	CHST3 (ENSNLEG00000016376) #10	PSAP (ENSNLEG00000016317) #11	VSIR (ENSNLEG00000032028)	CDH23 (ENSNLEG00000016188) #12	SLC29A3 (ENSNLEG00000016293) #15	UNC5B (ENSNLEG00000016277) #16	PCBD1 (ENSNLEG00000016186) #18	SGPL1 (ENSNLEG00000016177) #19	TBATA (ENSNLEG00000016173) #20	ADAMTS14 (ENSNLEG00000016144) #21	PRF1 (ENSNLEG00000016140) #22	ENSNLEG00000036037	PALD1 (ENSNLEG00000016133) #23	NODAL (ENSNLEG00000016126) #24	ENSNLEG00000016121 #25	ENSNLEG00000035303	ENSNLEG00000031664 #27	NPFFR1 (ENSNLEG00000016116) #29	PPA1 (ENSNLEG00000016098) #30	ENSNLEG00000028866	ENSNLEG00000035168	ENSNLEG00000033145	ENSNLEG00000016088	ENSNLEG00000016058	ENSNLEG00000034853	ENSNLEG00000016053
Cercopithecidae	ANCESTRAL SPECIES	15	ENSGT00390000018119 #7	ENSGT00940000157107 #9	ENSGT00910000147834	ENSGT00910000147223	ENSGT00940000161045 #10	ENSGT00940000156695.f #11	ENSGT00940000155245 #12	ENSGT00940000163256	ENSGT00490000043902 #14	ENSGT00950000182898.a.a.b #15	ENSGT00950000182815.a.a.a.b #16	ENSGT00390000007221.a.b #18	ENSGT00390000000046 #19	ENSGT00510000048896 #20	ENSGT00940000158426 #21	ENSGT00530000063725 #22	ENSGT00910000147560	ENSGT00390000005448 #23	ENSGT00940000160223 #24	ENSGT00940000155342.k.a.a #25	ENSGT00980000202026	ENSGT00940000155342.k.b #25	ENSGT00730000111199 #27	ENSGT01070000253744.b.a.b #29	ENSGT00390000017004.a.b.m.a #30	ENSGT00940000155276.x.a.b #31	ENSGT00390000014627 #32	ENSGT00390000004582 #33	ENSGT00940000158120 #34	ENSGT00940000154865 #35	ENSGT00860000135785
Cercopithecinae	ANCESTRAL SPECIES	15	ENSGT00390000018119 #7	ENSGT00940000157107 #9	ENSGT00910000147834	ENSGT00910000147223	ENSGT00940000161045 #10	ENSGT00940000156695.f #11	ENSGT00940000155245 #12	ENSGT00940000163256	ENSGT00490000043902 #14	ENSGT00950000182898.a.a.b #15	ENSGT00950000182815.a.a.a.b #16	ENSGT00390000007221.a.b #18	ENSGT00390000000046 #19	ENSGT00510000048896 #20	ENSGT00940000158426 #21	ENSGT00530000063725 #22	ENSGT00910000147560	ENSGT00390000005448 #23	ENSGT00940000160223 #24	ENSGT00940000155342.k.a.a #25	ENSGT00980000202026	ENSGT00940000155342.k.b #25	ENSGT00730000111199 #27	ENSGT01070000253744.b.a.b #29	ENSGT00390000017004.a.b.m.a #30	ENSGT00390000017004.a.b.l #30	ENSGT00940000155276.x.a.b #31	ENSGT00390000014627 #32	ENSGT00390000004582 #33	ENSGT00940000158120 #34	ENSGT00940000154865 #35
Vervet Monkey	MODERN SPECIES	28	DDIT4 (ENSCSAG00000008557)	ANAPC16 (ENSCSAG00000008552)	ASCC1 (ENSCSAG00000008531) #7	SPOCK2 (ENSCSAG00000008495) #9	CHST3 (ENSCSAG00000008485) #10	PSAP (ENSCSAG00000008477) #11	CDH23 (ENSCSAG00000008461) #12	VSIR (ENSCSAG00000008444)	C10orf105 (ENSCSAG00000018428) #14	ENSCSAG00000008430	SLC29A3 (ENSCSAG00000008424) #15	UNC5B (ENSCSAG00000008417) #16	PCBD1 (ENSCSAG00000008401) #18	SGPL1 (ENSCSAG00000008393) #19	ADAMTS14 (ENSCSAG00000008357) #21	PRF1 (ENSCSAG00000008314) #22	PALD1 (ENSCSAG00000008308) #23	NODAL (ENSCSAG00000008299) #24	ENSCSAG00000018429	EIF4EBP2 (ENSCSAG00000008294) #25	LRRC20 (ENSCSAG00000008285) #27	NPFFR1 (ENSCSAG00000008280) #29	ENSCSAG00000018430	PPA1 (ENSCSAG00000008269) #30	ENSCSAG00000008263 #31	TYSND1 (ENSCSAG00000008256) #32	AIFM2 (ENSCSAG00000008248) #33	MACROH2A2 (ENSCSAG00000008238) #34	COL13A1 (ENSCSAG00000008138) #35	ENSCSAG00000007948	FAM241B (ENSCSAG00000007942) #36
Cercopithecinae_a	ANCESTRAL SPECIES	14	ENSGT00390000018119 #7	ENSGT00940000157107 #9	ENSGT00910000147834	ENSGT00910000147223	ENSGT00940000161045 #10	ENSGT00940000156695.f #11	ENSGT00940000155245 #12	ENSGT00940000163256	ENSGT00490000043902 #14	ENSGT00950000182898.a.a.b #15	ENSGT00950000182815.a.a.a.b #16	ENSGT00390000007221.a.b #18	ENSGT00390000000046 #19	ENSGT00510000048896 #20	ENSGT00940000158426 #21	ENSGT00530000063725 #22	ENSGT00910000147560	ENSGT00390000005448 #23	ENSGT00940000160223 #24	ENSGT00940000155342.k.b #25	ENSGT00730000111199 #27	ENSGT01070000253744.b.a.b #29	ENSGT00390000017004.a.b.m.a #30	ENSGT00940000155276.x.a.b #31	ENSGT00390000014627 #32	ENSGT00390000004582 #33	ENSGT00940000158120 #34	ENSGT00940000154865 #35	ENSGT00860000135785	ENSGT00940000154340.B #36	ENSGT00940000163077 #37
Macaca	ANCESTRAL SPECIES	11	ENSGT00390000018109	ENSGT00390000018119 #7	ENSGT00940000157107 #9	ENSGT00910000147223	ENSGT00940000161045 #10	ENSGT00940000156695.f #11	ENSGT00940000155245 #12	ENSGT00940000163256	ENSGT00490000043902 #14	ENSGT00950000182898.a.a.b #15	ENSGT00950000182815.a.a.a.b #16	ENSGT00390000007221.a.b #18	ENSGT00390000000046 #19	ENSGT00510000048896 #20	ENSGT00940000158426 #21	ENSGT00530000063725 #22	ENSGT00390000005448 #23	ENSGT00940000160223 #24	ENSGT00940000155342.k.b #25	ENSGT00730000111199 #27	ENSGT01070000253744.b.a.b #29	ENSGT00390000017004.a.b.m.a #30	ENSGT00940000155276.x.a.b #31	ENSGT00390000014627 #32	ENSGT00390000004582 #33	ENSGT00940000158120 #34	ENSGT00940000154865 #35	ENSGT00860000135785	ENSGT00940000154340.B #36	ENSGT00940000163077 #37	ENSGT00940000157973
Macaca_a	ANCESTRAL SPECIES	13	ENSGT00390000018119 #7	ENSGT00940000157107 #9	ENSGT00910000147834	ENSGT00910000147223	ENSGT00940000161045 #10	ENSGT00940000156695.f #11	ENSGT00940000155245 #12	ENSGT00940000163256	ENSGT00490000043902 #14	ENSGT00950000182898.a.a.b #15	ENSGT00950000182815.a.a.a.b #16	ENSGT00390000007221.a.b #18	ENSGT00390000000046 #19	ENSGT00510000048896 #20	ENSGT00940000158426 #21	ENSGT00530000063725 #22	ENSGT00390000005448 #23	ENSGT00940000160223 #24	ENSGT01100000263577.a.a.b.b.a.a.b.b.a.a.b.b.b.a	ENSGT00940000155342.k.b #25	ENSGT01100000263493.a.a.a.b.a.a.b.a.b.a.b.a.a.a.a.b.a.b	ENSGT00730000111199 #27	ENSGT01070000253744.b.a.b #29	ENSGT00390000017004.a.b.m.a #30	ENSGT00940000155276.x.a.b #31	ENSGT00390000014627 #32	ENSGT00390000004582 #33	ENSGT00940000158120 #34	ENSGT00940000154865 #35	ENSGT00860000135785	ENSGT00940000154340.B #36
Rhesus	MODERN SPECIES	19	ANAPC16 (ENSMMUG00000015600)	ASCC1 (ENSMMUG00000009479) #7	SPOCK2 (ENSMMUG00000002122) #9	ENSMMUG00000052392	CHST3 (ENSMMUG00000052336) #10	PSAP (ENSMMUG00000012969) #11	CDH23 (ENSMMUG00000014733) #12	VSIR (ENSMMUG00000012967)	C9H10orf105 (ENSMMUG00000063575) #14	SLC29A3 (ENSMMUG00000006433) #15	UNC5B (ENSMMUG00000005998) #16	PCBD1 (ENSMMUG00000008789) #18	SGPL1 (ENSMMUG00000009800) #19	TBATA (ENSMMUG00000012333) #20	ADAMTS14 (ENSMMUG00000012330) #21	PRF1 (ENSMMUG00000064708) #22	PALD1 (ENSMMUG00000021618) #23	NODAL (ENSMMUG00000023171) #24	ENSMMUG00000054067	EIF4EBP2 (ENSMMUG00000055936) #25	ENSMMUG00000056761	LRRC20 (ENSMMUG00000014846) #27	NPFFR1 (ENSMMUG00000005367) #29	PPA1 (ENSMMUG00000006397) #30	SAR1A (ENSMMUG00000041491) #31	TYSND1 (ENSMMUG00000006391) #32	AIFM2 (ENSMMUG00000006392) #33	MACROH2A2 (ENSMMUG00000006395) #34	COL13A1 (ENSMMUG00000005716) #35	FAM241B (ENSMMUG00000016240) #36	NEUROG3 (ENSMMUG00000008956) #37
Crab-eating macaque	MODERN SPECIES	19	ENSMFAG00000060831	ENSMFAG00000054921	ENSMFAG00000052145	ENSMFAG00000048770	CHST3 (ENSMFAG00000063998) #10	PSAP (ENSMFAG00000031057) #11	VSIR (ENSMFAG00000031339)	ENSMFAG00000003044 #12	SLC29A3 (ENSMFAG00000000250) #15	UNC5B (ENSMFAG00000043834) #16	PCBD1 (ENSMFAG00000000150) #18	SGPL1 (ENSMFAG00000000706) #19	ENSMFAG00000063517	TBATA (ENSMFAG00000039238) #20	ADAMTS14 (ENSMFAG00000002509) #21	PRF1 (ENSMFAG00000033010) #22	PALD1 (ENSMFAG00000039573) #23	NODAL (ENSMFAG00000041504) #24	ENSMFAG00000055365	EIF4EBP2 (ENSMFAG00000000143) #25	ENSMFAG00000057854	LRRC20 (ENSMFAG00000041994) #27	NPFFR1 (ENSMFAG00000043253) #29	PPA1 (ENSMFAG00000043098) #30	ENSMFAG00000039894 #31	TYSND1 (ENSMFAG00000040775) #32	AIFM2 (ENSMFAG00000004041) #33	MACROH2A2 (ENSMFAG00000035957) #34	COL13A1 (ENSMFAG00000038649) #35	ENSMFAG00000054268	ENSMFAG00000054348
Pig-tailed macaque	MODERN SPECIES	353	DDIT4 (ENSMNEG00000005990)	ANAPC16 (ENSMNEG00000043234)	ASCC1 (ENSMNEG00000036564) #7	SPOCK2 (ENSMNEG00000044340) #9	ENSMNEG00000012103	CHST3 (ENSMNEG00000041252) #10	PSAP (ENSMNEG00000044295) #11	CDH23 (ENSMNEG00000045269) #12	VSIR (ENSMNEG00000030639)	SLC29A3 (ENSMNEG00000036547) #15	UNC5B (ENSMNEG00000041658) #16	PCBD1 (ENSMNEG00000044928) #18	SGPL1 (ENSMNEG00000036166) #19	TBATA (ENSMNEG00000036766) #20	ADAMTS14 (ENSMNEG00000041214) #21	PRF1 (ENSMNEG00000022959) #22	PALD1 (ENSMNEG00000034923) #23	NODAL (ENSMNEG00000036384) #24	EIF4EBP2 (ENSMNEG00000032389) #25	LRRC20 (ENSMNEG00000028501) #27	NPFFR1 (ENSMNEG00000043557) #29	PPA1 (ENSMNEG00000039051) #30	ENSMNEG00000038291	ENSMNEG00000030362 #31	TYSND1 (ENSMNEG00000044925) #32	AIFM2 (ENSMNEG00000043788) #33	MACROH2A2 (ENSMNEG00000040382) #34	COL13A1 (ENSMNEG00000042505) #35	ENSMNEG00000042846	FAM241B (ENSMNEG00000038490) #36	TSPAN15 (ENSMNEG00000011551)
Cercopithecinae_b	ANCESTRAL SPECIES	14	ENSGT00530000063652.b	ENSGT00390000018109	ENSGT00390000018119 #7	ENSGT00940000157107 #9	ENSGT00940000161045 #10	ENSGT00940000156695.f #11	ENSGT00940000155245 #12	ENSGT00940000163256	ENSGT00490000043902 #14	ENSGT00950000182898.a.a.b #15	ENSGT00950000182815.a.a.a.b #16	ENSGT00390000007221.a.b #18	ENSGT00390000000046 #19	ENSGT00510000048896 #20	ENSGT00940000158426 #21	ENSGT00530000063725 #22	ENSGT00910000147560	ENSGT00390000005448 #23	ENSGT00940000160223 #24	ENSGT00940000155342.k.b #25	ENSGT00730000111199 #27	ENSGT01070000253744.b.a.b #29	ENSGT00390000017004.a.b.m.a #30	ENSGT00940000155276.x.a.b #31	ENSGT00390000014627 #32	ENSGT00390000004582 #33	ENSGT00940000158120 #34	ENSGT00940000154865 #35	ENSGT00860000135785	ENSGT00940000154340.B #36	ENSGT00940000163077 #37
Olive baboon	MODERN SPECIES	2	DDIT4 (ENSPANG00000031523)	ANAPC16 (ENSPANG00000030424)	ASCC1 (ENSPANG00000022316) #7	SPOCK2 (ENSPANG00000022317) #9	CHST3 (ENSPANG00000022311) #10	PSAP (ENSPANG00000022310) #11	VSIR (ENSPANG00000022276)	C10orf105 (ENSPANG00000048606) #14	CDH23 (ENSPANG00000022272) #12	SLC29A3 (ENSPANG00000022277) #15	UNC5B (ENSPANG00000022279) #16	PCBD1 (ENSPANG00000022281) #18	SGPL1 (ENSPANG00000022284) #19	TBATA (ENSPANG00000022302) #20	ADAMTS14 (ENSPANG00000022255) #21	PRF1 (ENSPANG00000045329) #22	PALD1 (ENSPANG00000022258) #23	NODAL (ENSPANG00000022260) #24	EIF4EBP2 (ENSPANG00000048755) #25	LRRC20 (ENSPANG00000022262) #27	NPFFR1 (ENSPANG00000022264) #29	PPA1 (ENSPANG00000022268) #30	ENSPANG00000022249 #31	TYSND1 (ENSPANG00000022248) #32	AIFM2 (ENSPANG00000022172) #33	MACROH2A2 (ENSPANG00000022173) #34	COL13A1 (ENSPANG00000022178) #35	ENSPANG00000039279 #36	NEUROG3 (ENSPANG00000040225) #37	TSPAN15 (ENSPANG00000022162)	TACR2 (ENSPANG00000022163)
Cercopithecinae_d	ANCESTRAL SPECIES	39	ENSGT00390000018119 #7	ENSGT00940000157107 #9	ENSGT00910000147834	ENSGT00910000147732	ENSGT00940000161045 #10	ENSGT00940000156695.f #11	ENSGT00940000155245 #12	ENSGT00940000163256	ENSGT00900000143735	ENSGT00950000182898.a.a.b #15	ENSGT00950000182815.a.a.a.b #16	ENSGT00390000007221.a.b #18	ENSGT00390000000046 #19	ENSGT00510000048896 #20	ENSGT00940000158426 #21	ENSGT00530000063725 #22	ENSGT00910000147560	ENSGT00390000005448 #23	ENSGT00940000160223 #24	ENSGT00940000155342.k.b #25	ENSGT00730000111199 #27	ENSGT01070000253744.b.a.b #29	ENSGT00940000164233.b	ENSGT00390000017004.a.b.m.a #30	ENSGT00940000155276.x.a.b #31	ENSGT00390000014627 #32	ENSGT00390000004582 #33	ENSGT00940000158120 #34	ENSGT00940000154865 #35	ENSGT00860000135785	ENSGT00940000154340.B #36
Drill	MODERN SPECIES	1058	ASCC1 (ENSMLEG00000027895) #7	SPOCK2 (ENSMLEG00000007328) #9	ENSMLEG00000000083	ENSMLEG00000042384	CHST3 (ENSMLEG00000040092) #10	PSAP (ENSMLEG00000043054) #11	ENSMLEG00000033106	VSIR (ENSMLEG00000037776)	CDH23 (ENSMLEG00000033521) #12	SLC29A3 (ENSMLEG00000039423) #15	UNC5B (ENSMLEG00000036840) #16	PCBD1 (ENSMLEG00000043339) #18	SGPL1 (ENSMLEG00000037169) #19	TBATA (ENSMLEG00000030801) #20	ADAMTS14 (ENSMLEG00000040756) #21	PRF1 (ENSMLEG00000028310) #22	PALD1 (ENSMLEG00000037106) #23	NODAL (ENSMLEG00000031653) #24	ENSMLEG00000034679 #25	LRRC20 (ENSMLEG00000031698) #27	NPFFR1 (ENSMLEG00000040395) #29	ENSMLEG00000039663	PPA1 (ENSMLEG00000042677) #30	ENSMLEG00000043316	ENSMLEG00000037528 #31	AIFM2 (ENSMLEG00000039185) #33	MACROH2A2 (ENSMLEG00000031598) #34	COL13A1 (ENSMLEG00000041796) #35	ENSMLEG00000044294	FAM241B (ENSMLEG00000024095) #36	TSPAN15 (ENSMLEG00000027053)
Sooty mangabey	MODERN SPECIES	260	ASCC1 (ENSCATG00000013018) #7	SPOCK2 (ENSCATG00000014283) #9	ENSCATG00000019332	ENSCATG00000017252	CHST3 (ENSCATG00000042859) #10	PSAP (ENSCATG00000037341) #11	ENSCATG00000037459	VSIR (ENSCATG00000041934)	CDH23 (ENSCATG00000036516) #12	SLC29A3 (ENSCATG00000038777) #15	UNC5B (ENSCATG00000041425) #16	PCBD1 (ENSCATG00000034057) #18	SGPL1 (ENSCATG00000039604) #19	TBATA (ENSCATG00000012597) #20	ADAMTS14 (ENSCATG00000044780) #21	PRF1 (ENSCATG00000020126) #22	ENSCATG00000035638	PALD1 (ENSCATG00000011853) #23	NODAL (ENSCATG00000037917) #24	EIF4EBP2 (ENSCATG00000032356) #25	LRRC20 (ENSCATG00000013053) #27	NPFFR1 (ENSCATG00000045000) #29	ENSCATG00000029578	PPA1 (ENSCATG00000022364) #30	ENSCATG00000042578	ENSCATG00000039017 #31	TYSND1 (ENSCATG00000044480) #32	AIFM2 (ENSCATG00000040105) #33	MACROH2A2 (ENSCATG00000017786) #34	COL13A1 (ENSCATG00000042286) #35	ENSCATG00000041790
Rhinopithecus	ANCESTRAL SPECIES	50	ENSGT00390000018109	ENSGT00390000018119 #7	ENSGT00940000157107 #9	ENSGT00910000147732	ENSGT00940000161045 #10	ENSGT00940000156695.f #11	ENSGT00940000155245 #12	ENSGT00940000163256	ENSGT00900000143735	ENSGT00950000182898.a.a.b #15	ENSGT00950000182815.a.a.a.b #16	ENSGT00390000007221.a.b #18	ENSGT00390000000046 #19	ENSGT00510000048896 #20	ENSGT00940000158426 #21	ENSGT00530000063725 #22	ENSGT00390000005448 #23	ENSGT00940000160223 #24	ENSGT00940000155342.k.b #25	ENSGT00730000111199 #27	ENSGT01070000253744.b.a.b #29	ENSGT00390000017004.a.b.m.a #30	ENSGT00940000155276.x.a.b #31	ENSGT00390000014627 #32	ENSGT00390000004582 #33	ENSGT00940000158120 #34	ENSGT00940000154865 #35	ENSGT00860000135785	ENSGT00940000154340.B #36	ENSGT00940000157973	ENSGT00940000159720.w.a
Black snub-nosed monkey	MODERN SPECIES	443																PRF1 (ENSRBIG00000041640) #22	PALD1 (ENSRBIG00000037915) #23	ENSRBIG00000035564	NODAL (ENSRBIG00000038444) #24	EIF4EBP2 (ENSRBIG00000044383) #25	LRRC20 (ENSRBIG00000037874) #27	ENSRBIG00000026990	NPFFR1 (ENSRBIG00000028280) #29	PPA1 (ENSRBIG00000038632) #30	ENSRBIG00000031590 #31	TYSND1 (ENSRBIG00000033276) #32	AIFM2 (ENSRBIG00000034212) #33	MACROH2A2 (ENSRBIG00000037767) #34	COL13A1 (ENSRBIG00000044467) #35	ENSRBIG00000039926	FAM241B (ENSRBIG00000032853) #36
Golden snub-nosed monkey	MODERN SPECIES	1042												PCBD1 (ENSRROG00000039738) #18	SGPL1 (ENSRROG00000029487) #19	TBATA (ENSRROG00000044767) #20	ADAMTS14 (ENSRROG00000039375) #21	PRF1 (ENSRROG00000038836) #22	PALD1 (ENSRROG00000041817) #23	NODAL (ENSRROG00000038115) #24	EIF4EBP2 (ENSRROG00000041447) #25	LRRC20 (ENSRROG00000033880) #27	NPFFR1 (ENSRROG00000020856) #29	PPA1 (ENSRROG00000041730) #30	ENSRROG00000044164 #31	TYSND1 (ENSRROG00000003155) #32	AIFM2 (ENSRROG00000030811) #33	MACROH2A2 (ENSRROG00000038749) #34	COL13A1 (ENSRROG00000018038) #35	ENSRROG00000045424	FAM241B (ENSRROG00000035227) #36	ENSRROG00000012628	ENSRROG00000023405
Platyrrhini	ANCESTRAL SPECIES	14	ENSGT00390000018109	ENSGT00390000018119 #7	ENSGT00940000157107 #9	ENSGT00940000161045 #10	ENSGT00940000156695.f.k #11	ENSGT00940000155245 #12	ENSGT00940000163256	ENSGT00940000163216 #13	ENSGT00490000043902 #14	ENSGT00950000182898.a.a.b #15	ENSGT00950000182815.a.a.a.b #16	ENSGT00390000007221.a.b #18	ENSGT00390000000046 #19	ENSGT00510000048896 #20	ENSGT00940000158426 #21	ENSGT00530000063725 #22	ENSGT00390000005448 #23	ENSGT00940000160223 #24	ENSGT00940000155342.l #25	ENSGT00730000111199 #27	ENSGT01070000253744.b.a.b #29	ENSGT00390000017004.a.b.k #30	ENSGT00940000155276.x.a.a #31	ENSGT00390000014627 #32	ENSGT00390000004582 #33	ENSGT00940000158120 #34	ENSGT00940000154865 #35	ENSGT00860000135785	ENSGT00940000154340.B #36	ENSGT00940000163077 #37	ENSGT00940000157973
Cebidae	ANCESTRAL SPECIES	17	ENSGT00530000063652.b	ENSGT00390000018109	ENSGT00390000018119 #7	ENSGT00940000157107 #9	ENSGT00940000161045 #10	ENSGT00940000156695.f.k #11	ENSGT00940000155245 #12	ENSGT00940000163216 #13	ENSGT00490000043902 #14	ENSGT00950000182898.a.a.b #15	ENSGT00950000182815.a.a.a.b #16	ENSGT00390000007221.a.b #18	ENSGT00390000000046 #19	ENSGT00510000048896 #20	ENSGT00940000158426 #21	ENSGT00530000063725 #22	ENSGT00390000005448 #23	ENSGT00940000160223 #24	ENSGT00940000155342.l #25	ENSGT00730000111199 #27	ENSGT01070000253744.b.a.b #29	ENSGT00390000017004.a.b.k #30	ENSGT00940000155276.x.a.a #31	ENSGT00390000014627 #32	ENSGT00390000004582 #33	ENSGT00940000158120 #34	ENSGT00940000154865 #35	ENSGT00860000135785	ENSGT00940000154340.B #36	ENSGT00940000163077 #37	ENSGT00940000157973
Cebidae_a	ANCESTRAL SPECIES	62	ENSGT00530000063652.b	ENSGT00390000018109	ENSGT00390000018119 #7	ENSGT00940000157107 #9	ENSGT00940000161045 #10	ENSGT00940000156695.f.k #11	ENSGT00940000155245 #12	ENSGT00940000163256	ENSGT00940000163216 #13	ENSGT00950000182898.a.a.b #15	ENSGT00950000182815.a.a.a.b #16	ENSGT00390000007221.a.b #18	ENSGT00390000000046 #19	ENSGT00510000048896 #20	ENSGT00940000158426 #21	ENSGT00530000063725 #22	ENSGT00390000005448 #23	ENSGT00940000160223 #24	ENSGT00940000155342.l #25	ENSGT00730000111199 #27	ENSGT01070000253744.b.a.b #29	ENSGT00390000017004.a.b.k #30	ENSGT00940000155276.x.a.a #31	ENSGT00390000014627 #32	ENSGT00390000004582 #33	ENSGT00940000158120 #34	ENSGT00940000154865 #35	ENSGT00860000135785	ENSGT00940000154340.B #36	ENSGT00940000157973	ENSGT00940000155512
Capuchin	MODERN SPECIES	215	DDIT4 (ENSCCAG00000029729)	ENSCCAG00000035227	ASCC1 (ENSCCAG00000029607) #7	SPOCK2 (ENSCCAG00000000519) #9	CHST3 (ENSCCAG00000024311) #10	PSAP (ENSCCAG00000031808) #11	CDH23 (ENSCCAG00000024907) #12	ENSCCAG00000037741 #13	SLC29A3 (ENSCCAG00000025265) #15	UNC5B (ENSCCAG00000037321) #16	PCBD1 (ENSCCAG00000026880) #18	SGPL1 (ENSCCAG00000022681) #19	ENSCCAG00000034244	TBATA (ENSCCAG00000022065) #20	ADAMTS14 (ENSCCAG00000034347) #21	PRF1 (ENSCCAG00000035533) #22	PALD1 (ENSCCAG00000030277) #23	NODAL (ENSCCAG00000032672) #24	EIF4EBP2 (ENSCCAG00000037637) #25	ENSCCAG00000008526	LRRC20 (ENSCCAG00000023860) #27	NPFFR1 (ENSCCAG00000022929) #29	PPA1 (ENSCCAG00000032333) #30	SAR1A (ENSCCAG00000019722) #31	TYSND1 (ENSCCAG00000028714) #32	AIFM2 (ENSCCAG00000037129) #33	MACROH2A2 (ENSCCAG00000034612) #34	COL13A1 (ENSCCAG00000035276) #35	FAM241B (ENSCCAG00000032184) #36	TSPAN15 (ENSCCAG00000029490)	TACR2 (ENSCCAG00000022336)
Bolivian squirrel monkey	MODERN SPECIES	72	ANAPC16 (ENSSBOG00000025196)	ASCC1 (ENSSBOG00000022342) #7	ENSSBOG00000036237	SPOCK2 (ENSSBOG00000032449) #9	ENSSBOG00000010586	PSAP (ENSSBOG00000029786) #11	CDH23 (ENSSBOG00000033058) #12	VSIR (ENSSBOG00000001069)	ENSSBOG00000031393	SLC29A3 (ENSSBOG00000004257) #15	UNC5B (ENSSBOG00000026794) #16	PCBD1 (ENSSBOG00000033530) #18	SGPL1 (ENSSBOG00000031311) #19	TBATA (ENSSBOG00000022979) #20	ADAMTS14 (ENSSBOG00000029582) #21	PRF1 (ENSSBOG00000023777) #22	PALD1 (ENSSBOG00000022369) #23	NODAL (ENSSBOG00000035806) #24	EIF4EBP2 (ENSSBOG00000021003) #25	ENSSBOG00000032439	LRRC20 (ENSSBOG00000004099) #27	NPFFR1 (ENSSBOG00000027357) #29	ENSSBOG00000032113 #30	SAR1A (ENSSBOG00000036189) #31	TYSND1 (ENSSBOG00000031932) #32	AIFM2 (ENSSBOG00000021291) #33	MACROH2A2 (ENSSBOG00000026312) #34	COL13A1 (ENSSBOG00000033267) #35	ENSSBOG00000033865	FAM241B (ENSSBOG00000025145) #36	ENSSBOG00000026497
Marmoset	MODERN SPECIES	3	ASCC1 (ENSCJAG00000007273) #7	ANAPC16 (ENSCJAG00000086671)	ENSCJAG00000075810	SPOCK2 (ENSCJAG00000007252) #9	ENSCJAG00000007248	PSAP (ENSCJAG00000012992) #11	CDH23 (ENSCJAG00000034339) #12	ENSCJAG00000007203 #13	C10orf105 (ENSCJAG00000057054) #14	SLC29A3 (ENSCJAG00000044812) #15	UNC5B (ENSCJAG00000007027) #16	SGPL1 (ENSCJAG00000014777) #19	PCBD1 (ENSCJAG00000039995) #18	TBATA (ENSCJAG00000014795) #20	ADAMTS14 (ENSCJAG00000086368) #21	PRF1 (ENSCJAG00000014858) #22	PALD1 (ENSCJAG00000016917) #23	NODAL (ENSCJAG00000016288) #24	ENSCJAG00000082174 #25	LRRC20 (ENSCJAG00000016341) #27	NPFFR1 (ENSCJAG00000016344) #29	ENSCJAG00000042744 #31	TYSND1 (ENSCJAG00000016374) #32	MACROH2A2 (ENSCJAG00000016412) #34	ENSCJAG00000075489	COL13A1 (ENSCJAG00000016435) #35	FAM241B (ENSCJAG00000073180) #36	NEUROG3 (ENSCJAG00000016485) #37	TSPAN15 (ENSCJAG00000016486)	TACR2 (ENSCJAG00000048453)	HK1 (ENSCJAG00000016503)
Mas night monkey	MODERN SPECIES	914	ENSANAG00000001612	ENSANAG00000028229	SPOCK2 (ENSANAG00000036693) #9	CHST3 (ENSANAG00000021274) #10	PSAP (ENSANAG00000025217) #11	ENSANAG00000033011 #12	VSIR (ENSANAG00000028142)	ENSANAG00000027248 #12	ENSANAG00000025046	SLC29A3 (ENSANAG00000028508) #15	UNC5B (ENSANAG00000024842) #16	PCBD1 (ENSANAG00000036039) #18	SGPL1 (ENSANAG00000025187) #19	TBATA (ENSANAG00000029809) #20	ADAMTS14 (ENSANAG00000035447) #21	PRF1 (ENSANAG00000026005) #22	PALD1 (ENSANAG00000034270) #23	NODAL (ENSANAG00000023960) #24	ENSANAG00000024340 #25	ENSANAG00000022049	ENSANAG00000035837	LRRC20 (ENSANAG00000027549) #27	ENSANAG00000021565	NPFFR1 (ENSANAG00000026811) #29	PPA1 (ENSANAG00000027550) #30	SAR1A (ENSANAG00000030371) #31	TYSND1 (ENSANAG00000024230) #32	AIFM2 (ENSANAG00000030545) #33	MACROH2A2 (ENSANAG00000019173) #34
Tarsier	MODERN SPECIES	4341														TBATA (ENSTSYG00000000861) #20	ADAMTS14 (ENSTSYG00000003630) #21	PRF1 (ENSTSYG00000031885) #22	PALD1 (ENSTSYG00000037409) #23	NODAL (ENSTSYG00000005226) #24	EIF4EBP2 (ENSTSYG00000037472) #25	LRRC20 (ENSTSYG00000008661) #27	ENSTSYG00000034547	NPFFR1 (ENSTSYG00000028235) #29	PPA1 (ENSTSYG00000005511) #30
Strepsirrhini	ANCESTRAL SPECIES	11	ENSGT00390000018119 #7	ENSGT00940000157107 #9	ENSGT00940000161045 #10	ENSGT00940000156695.f #11	ENSGT00940000163256	ENSGT00900000143735	ENSGT00490000043902 #14	ENSGT00940000163216 #13	ENSGT00940000155245 #12	ENSGT00950000182898.a.a.b #15	ENSGT00950000182815.a.a.a.b #16	ENSGT00390000007221.a.b #18	ENSGT00390000000046 #19	ENSGT00510000048896 #20	ENSGT00940000158426 #21	ENSGT00530000063725 #22	ENSGT00390000005448 #23	ENSGT00940000160223 #24	ENSGT00940000155342 #25	ENSGT00730000111199 #27	ENSGT01070000253744.b.a.b #29	ENSGT00390000017004.a.b #30	ENSGT00940000155276.x.a #31	ENSGT00910000146657	ENSGT00390000014627 #32	ENSGT00390000004582 #33	ENSGT00940000158120 #34	ENSGT00940000154865 #35	ENSGT00860000135785	ENSGT00940000154340.B #36	ENSGT00940000163077 #37
Lemuriformes	ANCESTRAL SPECIES	7	ENSGT00390000018109	ENSGT00390000018119 #7	ENSGT00940000157107 #9	ENSGT00940000161045 #10	ENSGT00940000156695.f #11	ENSGT00940000163256	ENSGT00900000143735	ENSGT00490000043902 #14	ENSGT00940000155245 #12	ENSGT00950000182898.a.a.b #15	ENSGT00950000182815.a.a.a.b #16	ENSGT00390000007221.a.b #18	ENSGT00390000000046 #19	ENSGT00510000048896 #20	ENSGT00940000158426 #21	ENSGT00530000063725 #22	ENSGT00390000005448 #23	ENSGT00940000160223 #24	ENSGT00940000155342 #25	ENSGT00730000111199 #27	ENSGT01070000253744.b.a.b #29	ENSGT00390000017004.a.b #30	ENSGT00940000155276.x.a #31	ENSGT00910000146657	ENSGT00390000014627 #32	ENSGT00390000004582 #33	ENSGT00940000158120 #34	ENSGT00940000154865 #35	ENSGT00860000135785	ENSGT00940000154340.B #36	ENSGT00940000163077 #37
Lemuriformes_a	ANCESTRAL SPECIES	48	ENSGT00390000018109	ENSGT00390000018119 #7	ENSGT00940000157107 #9	ENSGT00940000161045 #10	ENSGT00940000156695.f #11	ENSGT00940000163256	ENSGT00900000143735	ENSGT00490000043902 #14	ENSGT00940000155245 #12	ENSGT00950000182898.a.a.b #15	ENSGT00950000182815.a.a.a.b #16	ENSGT00390000007221.a.b #18	ENSGT00390000000046 #19	ENSGT00510000048896 #20	ENSGT00940000158426 #21	ENSGT00530000063725 #22	ENSGT00390000005448 #23	ENSGT00940000160223 #24	ENSGT00940000155342 #25	ENSGT00730000111199 #27	ENSGT01070000253744.b.a.b #29	ENSGT00390000017004.a.b #30	ENSGT00940000155276.x.a #31	ENSGT00910000146657	ENSGT00390000014627 #32	ENSGT00390000004582 #33	ENSGT00940000158120 #34	ENSGT00940000154865 #35	ENSGT00860000135785	ENSGT00940000154340.B #36	ENSGT00940000163077 #37
Coquerels sifaka	MODERN SPECIES	112																PRF1 (ENSPCOG00000017299) #22	PALD1 (ENSPCOG00000018393) #23	NODAL (ENSPCOG00000016462) #24	EIF4EBP2 (ENSPCOG00000020121) #25	LRRC20 (ENSPCOG00000022500) #27	NPFFR1 (ENSPCOG00000016193) #29	PPA1 (ENSPCOG00000014348) #30	SAR1A (ENSPCOG00000021042) #31	TYSND1 (ENSPCOG00000007292) #32	AIFM2 (ENSPCOG00000019339) #33	MACROH2A2 (ENSPCOG00000024809) #34	COL13A1 (ENSPCOG00000018840) #35	FAM241B (ENSPCOG00000015529) #36	TSPAN15 (ENSPCOG00000018271)	TACR2 (ENSPCOG00000007728)	HK1 (ENSPCOG00000014452)
Greater bamboo lemur	MODERN SPECIES	57											UNC5B (ENSPSMG00000007197) #16	PCBD1 (ENSPSMG00000007214) #18	SGPL1 (ENSPSMG00000007259) #19	TBATA (ENSPSMG00000007268) #20	ADAMTS14 (ENSPSMG00000007294) #21	PRF1 (ENSPSMG00000007307) #22	PALD1 (ENSPSMG00000007366) #23	NODAL (ENSPSMG00000007389) #24	EIF4EBP2 (ENSPSMG00000007393) #25	LRRC20 (ENSPSMG00000007422) #27	NPFFR1 (ENSPSMG00000007436) #29	PPA1 (ENSPSMG00000007508) #30	ENSPSMG00000007535	SAR1A (ENSPSMG00000007560) #31	ENSPSMG00000007573	TYSND1 (ENSPSMG00000007584) #32	AIFM2 (ENSPSMG00000007628) #33	MACROH2A2 (ENSPSMG00000007648) #34	COL13A1 (ENSPSMG00000008300) #35	ENSPSMG00000008742	FAM241B (ENSPSMG00000008746) #36
Mouse lemur	MODERN SPECIES	6	DDIT4 (ENSMICG00000034685)	ANAPC16 (ENSMICG00000004229)	ASCC1 (ENSMICG00000004222) #7	SPOCK2 (ENSMICG00000004214) #9	ENSMICG00000045082	CHST3 (ENSMICG00000004209) #10	PSAP (ENSMICG00000000087) #11	VSIR (ENSMICG00000000086)	CDH23 (ENSMICG00000000081) #12	SLC29A3 (ENSMICG00000037185) #15	UNC5B (ENSMICG00000017152) #16	PCBD1 (ENSMICG00000015152) #18	SGPL1 (ENSMICG00000015141) #19	TBATA (ENSMICG00000015129) #20	ADAMTS14 (ENSMICG00000015113) #21	PRF1 (ENSMICG00000028747) #22	PALD1 (ENSMICG00000015086) #23	NODAL (ENSMICG00000015080) #24	ENSMICG00000043210 #25	LRRC20 (ENSMICG00000015067) #27	NPFFR1 (ENSMICG00000045660) #29	ENSMICG00000029937 #30	SAR1A (ENSMICG00000001638) #31	TYSND1 (ENSMICG00000035296) #32	AIFM2 (ENSMICG00000001632) #33	MACROH2A2 (ENSMICG00000001630) #34	COL13A1 (ENSMICG00000007401) #35	FAM241B (ENSMICG00000027702) #36	TSPAN15 (ENSMICG00000015036)	TACR2 (ENSMICG00000043783)	HK1 (ENSMICG00000015004)
Bushbaby	MODERN SPECIES	123	DDIT4 (ENSOGAG00000032349)	ENSOGAG00000008215	ASCC1 (ENSOGAG00000008212) #7	SPOCK2 (ENSOGAG00000009388) #9	ENSOGAG00000025801	PSAP (ENSOGAG00000011925) #11	ENSOGAG00000011923 #13	ENSOGAG00000011907 #12	C10orf105 (ENSOGAG00000028752) #14	SLC29A3 (ENSOGAG00000011903) #15	UNC5B (ENSOGAG00000000567) #16	PCBD1 (ENSOGAG00000006192) #18	SGPL1 (ENSOGAG00000006188) #19	TBATA (ENSOGAG00000013573) #20	ADAMTS14 (ENSOGAG00000013558) #21	PRF1 (ENSOGAG00000028301) #22	PALD1 (ENSOGAG00000005717) #23	NODAL (ENSOGAG00000005716) #24	EIF4EBP2 (ENSOGAG00000005714) #25	LRRC20 (ENSOGAG00000010085) #27	ENSOGAG00000031126	NPFFR1 (ENSOGAG00000032350) #29	PPA1 (ENSOGAG00000013529) #30	SAR1A (ENSOGAG00000005040) #31	TYSND1 (ENSOGAG00000028011) #32	AIFM2 (ENSOGAG00000005036) #33	MACROH2A2 (ENSOGAG00000005035) #34	COL13A1 (ENSOGAG00000004498) #35	FAM241B (ENSOGAG00000016371) #36	NEUROG3 (ENSOGAG00000005928) #37	TSPAN15 (ENSOGAG00000005925)
Laurasiatheria	ANCESTRAL SPECIES	14	ENSGT00940000157107 #9	ENSGT00940000164185	ENSGT00910000147834	ENSGT00940000161045 #10	ENSGT00940000156695.f #11	ENSGT00940000163216 #13	ENSGT00940000155245 #12	ENSGT00940000163256	ENSGT00490000043902 #14	ENSGT00950000182898.a.a.b #15	ENSGT00950000182815.a.a.a.b #16	ENSGT00390000007221.a.b #18	ENSGT00390000000046 #19	ENSGT00510000048896 #20	ENSGT00940000158426 #21	ENSGT00530000063725 #22	ENSGT00390000005448 #23	ENSGT00940000160223 #24	ENSGT00980000202026	ENSGT00940000155342 #25	ENSGT00730000111199 #27	ENSGT01070000253744.b.a.b #29	ENSGT00390000017004.a.b #30	ENSGT00940000155276 #31	ENSGT00910000146657	ENSGT00390000014627 #32	ENSGT00390000004582 #33	ENSGT00940000158120 #34	ENSGT00940000154865 #35	ENSGT00940000154340.B #36	ENSGT00940000163077 #37
Laurasiatheria_a	ANCESTRAL SPECIES	15	ENSGT00940000157107 #9	ENSGT00940000164185	ENSGT00910000147834	ENSGT00940000161045 #10	ENSGT00940000156695.f #11	ENSGT00940000163256	ENSGT00490000043902 #14	ENSGT00940000155245 #12	ENSGT00940000163216 #13	ENSGT00950000182898.a.a.b #15	ENSGT00950000182815.a.a.a.b #16	ENSGT00390000007221.a.b #18	ENSGT00390000000046 #19	ENSGT00510000048896 #20	ENSGT00940000158426 #21	ENSGT00530000063725 #22	ENSGT00390000005448 #23	ENSGT00940000160223 #24	ENSGT00980000202026	ENSGT00940000155342 #25	ENSGT00730000111199 #27	ENSGT01070000253744.b.a.b #29	ENSGT00390000017004.a.b #30	ENSGT00940000155276 #31	ENSGT00910000146657	ENSGT00390000014627 #32	ENSGT00390000004582 #33	ENSGT00940000158120 #34	ENSGT00940000154865 #35	ENSGT00940000154340.B #36	ENSGT00940000163077 #37
Artiodactyla	ANCESTRAL SPECIES	14	ENSGT00390000018109	ENSGT00390000018119 #7	ENSGT00940000157107 #9	ENSGT00940000161045 #10	ENSGT00940000156695.f #11	ENSGT00940000163256	ENSGT00940000155245 #12	ENSGT00940000163216 #13	ENSGT00490000043902 #14	ENSGT00950000182898.a.a.b #15	ENSGT00950000182815.a.a.a.b #16	ENSGT00390000007221.a.b #18	ENSGT00390000000046 #19	ENSGT00510000048896 #20	ENSGT00940000158426 #21	ENSGT00530000063725 #22	ENSGT00390000005448 #23	ENSGT00940000160223 #24	ENSGT00980000202026	ENSGT00940000155342 #25	ENSGT00730000111199 #27	ENSGT01070000253744.b.a.b #29	ENSGT00390000017004.a.b #30	ENSGT00940000155276 #31	ENSGT00910000146657	ENSGT00390000014627 #32	ENSGT00390000004582 #33	ENSGT00940000158120 #34	ENSGT00940000154865 #35	ENSGT00940000154340.B #36	ENSGT00940000163077 #37
Suina	ANCESTRAL SPECIES	6	ENSGT00530000063652.b	ENSGT00390000018109	ENSGT00390000018119 #7	ENSGT00940000157107 #9	ENSGT00940000161045 #10	ENSGT00940000156695.f #11	ENSGT00940000155245 #12	ENSGT00940000163256	ENSGT00490000043902 #14	ENSGT00950000182898.a.a.b #15	ENSGT00950000182815.a.a.a.b #16	ENSGT00390000007221.a.b #18	ENSGT00390000000046 #19	ENSGT00510000048896 #20	ENSGT00940000158426 #21	ENSGT00530000063725 #22	ENSGT00390000005448 #23	ENSGT00940000160223 #24	ENSGT00980000202026	ENSGT00940000155342 #25	ENSGT00730000111199 #27	ENSGT01070000253744.b.a.b #29	ENSGT00390000017004.a.b #30	ENSGT00940000155276 #31	ENSGT00390000014627 #32	ENSGT00390000004582 #33	ENSGT00940000158120 #34	ENSGT00940000154865 #35	ENSGT00940000154340.B #36	ENSGT00940000163077 #37	ENSGT00940000157973
Pig	MODERN SPECIES	5	ASCC1 (ENSSSCG00000023130) #7	SPOCK2 (ENSSSCG00000010283) #9	CHST3 (ENSSSCG00000023662) #10	PSAP (ENSSSCG00000010281) #11	ENSSSCG00000037377	ENSSSCG00000010280 #13	ENSSSCG00000010278 #12	C10orf105 (ENSSSCG00000038545) #14	ENSSSCG00000059909 #12	SLC29A3 (ENSSSCG00000010277) #15	UNC5B (ENSSSCG00000010276) #16	PCBD1 (ENSSSCG00000010275) #18	SGPL1 (ENSSSCG00000010274) #19	TBATA (ENSSSCG00000010273) #20	ADAMTS14 (ENSSSCG00000010272) #21	PRF1 (ENSSSCG00000010271) #22	PALD1 (ENSSSCG00000036446) #23	NODAL (ENSSSCG00000039399) #24	ENSSSCG00000051352	EIF4EBP2 (ENSSSCG00000034444) #25	LRRC20 (ENSSSCG00000010267) #27	NPFFR1 (ENSSSCG00000010266) #29	PPA1 (ENSSSCG00000010261) #30	SAR1A (ENSSSCG00000010260) #31	TYSND1 (ENSSSCG00000010259) #32	AIFM2 (ENSSSCG00000010258) #33	MACROH2A2 (ENSSSCG00000031713) #34	COL13A1 (ENSSSCG00000010256) #35	NEUROG3 (ENSSSCG00000034488) #37	ENSSSCG00000040498 #36	TSPAN15 (ENSSSCG00000036152)
Chacoan peccary	MODERN SPECIES	975	DDIT4 (ENSCWAG00000012642)	ENSCWAG00000012671	ASCC1 (ENSCWAG00000012712) #7	SPOCK2 (ENSCWAG00000012767) #9	CHST3 (ENSCWAG00000012886) #10	PSAP (ENSCWAG00000012971) #11	CDH23 (ENSCWAG00000013081) #12	VSIR (ENSCWAG00000014686)	C10orf105 (ENSCWAG00000014717) #14	SLC29A3 (ENSCWAG00000014764) #15	UNC5B (ENSCWAG00000014854) #16	PCBD1 (ENSCWAG00000014992) #18	SGPL1 (ENSCWAG00000015032) #19	TBATA (ENSCWAG00000015055) #20	ADAMTS14 (ENSCWAG00000015143) #21	PRF1 (ENSCWAG00000015460) #22	PALD1 (ENSCWAG00000015496) #23	NODAL (ENSCWAG00000015637) #24	EIF4EBP2 (ENSCWAG00000015658) #25	LRRC20 (ENSCWAG00000015697) #27	NPFFR1 (ENSCWAG00000015796) #29	ENSCWAG00000015835 #30	SAR1A (ENSCWAG00000015906) #31	TYSND1 (ENSCWAG00000015978) #32	AIFM2 (ENSCWAG00000016003) #33	MACROH2A2 (ENSCWAG00000016038) #34	COL13A1 (ENSCWAG00000016547) #35	FAM241B (ENSCWAG00000021547) #36	NEUROG3 (ENSCWAG00000021549) #37	TSPAN15 (ENSCWAG00000021555)	TACR2 (ENSCWAG00000021559)
Artiodactyla_a	ANCESTRAL SPECIES	14	ENSGT00530000063652.b	ENSGT00390000018109	ENSGT00390000018119 #7	ENSGT00940000157107 #9	ENSGT00940000161045 #10	ENSGT00940000156695.f #11	ENSGT00940000155245 #12	ENSGT00940000163256	ENSGT00490000043902 #14	ENSGT00950000182898.a.a.b #15	ENSGT00950000182815.a.a.a.b #16	ENSGT00390000007221.a.b #18	ENSGT00390000000046 #19	ENSGT00510000048896 #20	ENSGT00940000158426 #21	ENSGT00530000063725 #22	ENSGT00390000005448 #23	ENSGT00940000160223 #24	ENSGT00940000155342 #25	ENSGT00730000111199 #27	ENSGT01070000253744.b.a.b #29	ENSGT00390000017004.a.b #30	ENSGT00940000155276 #31	ENSGT00910000146657	ENSGT00390000014627 #32	ENSGT00390000004582 #33	ENSGT00940000158120 #34	ENSGT00940000154865 #35	ENSGT00940000154340.B #36	ENSGT00940000163077 #37	ENSGT00940000157973
Artiodactyla_b	ANCESTRAL SPECIES	13	ENSGT00530000063652.b	ENSGT00390000018109	ENSGT00390000018119 #7	ENSGT00940000157107 #9	ENSGT00940000161045 #10	ENSGT00940000156695.f #11	ENSGT00940000163256	ENSGT00490000043902 #14	ENSGT00940000155245 #12	ENSGT00950000182898.a.a.b #15	ENSGT00950000182815.a.a.a.b #16	ENSGT00390000007221.a.b #18	ENSGT00390000000046 #19	ENSGT00510000048896 #20	ENSGT00940000158426 #21	ENSGT00530000063725 #22	ENSGT00390000005448 #23	ENSGT00940000160223 #24	ENSGT00940000155342 #25	ENSGT00730000111199 #27	ENSGT01070000253744.b.a.b #29	ENSGT00390000017004.a.b #30	ENSGT00940000155276 #31	ENSGT00910000146657	ENSGT00390000014627 #32	ENSGT00390000004582 #33	ENSGT00940000158120 #34	ENSGT00940000154865 #35	ENSGT00940000154340.B #36	ENSGT00940000163077 #37	ENSGT00940000157973
Cetacea	ANCESTRAL SPECIES	15	ENSGT00530000063652.b	ENSGT00390000018109	ENSGT00390000018119 #7	ENSGT00940000157107 #9	ENSGT00940000161045 #10	ENSGT00940000156695.f #11	ENSGT00940000163256	ENSGT00490000043902 #14	ENSGT00940000155245 #12	ENSGT00950000182898.a.a.b #15	ENSGT00950000182815.a.a.a.b #16	ENSGT00390000007221.a.b #18	ENSGT00390000000046 #19	ENSGT00510000048896 #20	ENSGT00940000158426 #21	ENSGT00530000063725 #22	ENSGT00390000005448 #23	ENSGT00940000160223 #24	ENSGT00940000155342 #25	ENSGT00730000111199 #27	ENSGT01070000253744.b.a.b #29	ENSGT00390000017004.a.b #30	ENSGT00940000155276 #31	ENSGT00390000014627 #32	ENSGT00390000004582 #33	ENSGT00940000158120 #34	ENSGT00940000154865 #35	ENSGT00940000154340.B #36	ENSGT00940000163077 #37	ENSGT00940000157973	ENSGT00940000155512
Odontoceti	ANCESTRAL SPECIES	14	ENSGT00390000018109	ENSGT00390000018119 #7	ENSGT00940000157107 #9	ENSGT00940000161045 #10	ENSGT00940000164185	ENSGT00940000156695.f #11	ENSGT00940000163256	ENSGT00490000043902 #14	ENSGT00940000155245 #12	ENSGT00950000182898.a.a.b #15	ENSGT00950000182815.a.a.a.b #16	ENSGT00390000007221.a.b #18	ENSGT00390000000046 #19	ENSGT00510000048896 #20	ENSGT00940000158426 #21	ENSGT00530000063725 #22	ENSGT00390000005448 #23	ENSGT00940000160223 #24	ENSGT00940000155342 #25	ENSGT00730000111199 #27	ENSGT01070000253744.b.a.b #29	ENSGT00390000017004.a.b #30	ENSGT00940000155276 #31	ENSGT00390000014627 #32	ENSGT00390000004582 #33	ENSGT00940000158120 #34	ENSGT00940000154865 #35	ENSGT00940000154340.B #36	ENSGT00940000163077 #37	ENSGT00940000157973	ENSGT00940000155512
Odontoceti_a	ANCESTRAL SPECIES	11	ENSGT00390000018109	ENSGT00390000018119 #7	ENSGT00940000157107 #9	ENSGT00940000161045 #10	ENSGT00940000164185	ENSGT00940000156695.f #11	ENSGT00940000163256	ENSGT00490000043902 #14	ENSGT00940000155245 #12	ENSGT00950000182898.a.a.b #15	ENSGT00950000182815.a.a.a.b #16	ENSGT00390000007221.a.b #18	ENSGT00390000000046 #19	ENSGT00510000048896 #20	ENSGT00940000158426 #21	ENSGT00530000063725 #22	ENSGT00390000005448 #23	ENSGT00940000160223 #24	ENSGT00940000155342 #25	ENSGT00730000111199 #27	ENSGT01070000253744.b.a.b #29	ENSGT00390000017004.a.b #30	ENSGT00940000155276 #31	ENSGT00390000014627 #32	ENSGT00390000004582 #33	ENSGT00940000158120 #34	ENSGT00940000154865 #35	ENSGT00940000154340.B #36	ENSGT00940000163077 #37	ENSGT00940000157973	ENSGT00940000155512
Odontoceti_b	ANCESTRAL SPECIES	14	ENSGT00390000018109	ENSGT00390000018119 #7	ENSGT00940000157107 #9	ENSGT00910000147223	ENSGT00940000164185	ENSGT00940000156695.f #11	ENSGT00940000163256	ENSGT00490000043902 #14	ENSGT00940000155245 #12	ENSGT00950000182898.a.a.b #15	ENSGT00950000182815.a.a.a.b #16	ENSGT00390000007221.a.b #18	ENSGT00390000000046 #19	ENSGT00510000048896 #20	ENSGT00940000158426 #21	ENSGT00530000063725 #22	ENSGT00390000005448 #23	ENSGT00940000160223 #24	ENSGT00940000155342 #25	ENSGT00730000111199 #27	ENSGT01070000253744.b.a.b #29	ENSGT00390000017004.a.b #30	ENSGT00940000155276 #31	ENSGT00390000014627 #32	ENSGT00390000004582 #33	ENSGT00940000158120 #34	ENSGT00940000154865 #35	ENSGT00940000154340.B #36	ENSGT00940000163077 #37	ENSGT00940000157973	ENSGT00940000155512
Monodontidae	ANCESTRAL SPECIES	14	ENSGT00390000018109	ENSGT00390000018119 #7	ENSGT00940000157107 #9	ENSGT00910000147223	ENSGT00940000164185	ENSGT00940000156695.f #11	ENSGT00940000163256	ENSGT00490000043902 #14	ENSGT00940000155245 #12	ENSGT00950000182898.a.a.b #15	ENSGT00950000182815.a.a.a.b #16	ENSGT00390000007221.a.b #18	ENSGT00390000000046 #19	ENSGT00510000048896 #20	ENSGT00940000158426 #21	ENSGT00530000063725 #22	ENSGT00390000005448 #23	ENSGT00940000160223 #24	ENSGT00940000155342 #25	ENSGT00730000111199 #27	ENSGT01070000253744.b.a.b #29	ENSGT00390000017004.a.b #30	ENSGT00940000155276 #31	ENSGT00390000014627 #32	ENSGT00390000004582 #33	ENSGT00940000158120 #34	ENSGT00940000154865 #35	ENSGT00940000154340.B #36	ENSGT00940000163077 #37	ENSGT00940000157973	ENSGT00940000155512
Beluga whale	MODERN SPECIES	65	DDIT4 (ENSDLEG00000014622)	ANAPC16 (ENSDLEG00000014633)	ASCC1 (ENSDLEG00000014655) #7	SPOCK2 (ENSDLEG00000014685) #9	CHST3 (ENSDLEG00000014749)	PSAP (ENSDLEG00000014758) #11	CDH23 (ENSDLEG00000014973) #12	VSIR (ENSDLEG00000017058)	CUNH10orf105 (ENSDLEG00000017071) #14	SLC29A3 (ENSDLEG00000017078) #15	UNC5B (ENSDLEG00000017208) #16	PCBD1 (ENSDLEG00000019075) #18	SGPL1 (ENSDLEG00000019085) #19	TBATA (ENSDLEG00000019113) #20	ADAMTS14 (ENSDLEG00000019128) #21	PRF1 (ENSDLEG00000019154) #22	PALD1 (ENSDLEG00000019170) #23	NODAL (ENSDLEG00000019187) #24	EIF4EBP2 (ENSDLEG00000019193) #25	LRRC20 (ENSDLEG00000019204) #27	NPFFR1 (ENSDLEG00000019219) #29	PPA1 (ENSDLEG00000007942) #30	SAR1A (ENSDLEG00000007962) #31	TYSND1 (ENSDLEG00000007982) #32	AIFM2 (ENSDLEG00000007993) #33	MACROH2A2 (ENSDLEG00000008011) #34	COL13A1 (ENSDLEG00000008033) #35	FAM241B (ENSDLEG00000008202) #36	NEUROG3 (ENSDLEG00000008229) #37	TSPAN15 (ENSDLEG00000008241)	TACR2 (ENSDLEG00000008300)
Narwhal	MODERN SPECIES	311	ANAPC16 (ENSMMNG00015021610)	ASCC1 (ENSMMNG00015021600) #7	SPOCK2 (ENSMMNG00015021581) #9	ENSMMNG00015021569	ENSMMNG00015021560	PSAP (ENSMMNG00015021549) #11	VSIR (ENSMMNG00015021540)	C10orf105 (ENSMMNG00015021533) #14	CDH23 (ENSMMNG00015021504) #12	SLC29A3 (ENSMMNG00015021469) #15	UNC5B (ENSMMNG00015021439) #16	ENSMMNG00015021426 #18	SGPL1 (ENSMMNG00015021410) #19	TBATA (ENSMMNG00015021388) #20	ADAMTS14 (ENSMMNG00015021357) #21	PRF1 (ENSMMNG00015021328) #22	PALD1 (ENSMMNG00015021314) #23	NODAL (ENSMMNG00015021300) #24	EIF4EBP2 (ENSMMNG00015021294) #25	ENSMMNG00015021284	LRRC20 (ENSMMNG00015021275) #27	NPFFR1 (ENSMMNG00015021258) #29	PPA1 (ENSMMNG00015021247) #30	SAR1A (ENSMMNG00015021225) #31	TYSND1 (ENSMMNG00015021209) #32	AIFM2 (ENSMMNG00015021184) #33	MACROH2A2 (ENSMMNG00015021163) #34	COL13A1 (ENSMMNG00015019392) #35	FAM241B (ENSMMNG00015018581) #36	NEUROG3 (ENSMMNG00015018559) #37	TSPAN15 (ENSMMNG00015018513)
Vaquita	MODERN SPECIES	7	ASCC1 (ENSPSNG00000012103) #7	SPOCK2 (ENSPSNG00000011932) #9	ENSPSNG00000011900	ENSPSNG00000011876	ENSPSNG00000011842	PSAP (ENSPSNG00000011730) #11	VSIR (ENSPSNG00000011665)	C10orf105 (ENSPSNG00000011646) #14	CDH23 (ENSPSNG00000009904) #12	SLC29A3 (ENSPSNG00000021104) #15	UNC5B (ENSPSNG00000021006) #16	ENSPSNG00000020953 #18	SGPL1 (ENSPSNG00000020906) #19	TBATA (ENSPSNG00000020841) #20	ADAMTS14 (ENSPSNG00000020694) #21	PRF1 (ENSPSNG00000020654) #22	PALD1 (ENSPSNG00000020534) #23	NODAL (ENSPSNG00000020491) #24	ENSPSNG00000020464 #25	ENSPSNG00000020439	LRRC20 (ENSPSNG00000020377) #27	NPFFR1 (ENSPSNG00000020327) #29	PPA1 (ENSPSNG00000020295) #30	SAR1A (ENSPSNG00000020248) #31	TYSND1 (ENSPSNG00000020220) #32	AIFM2 (ENSPSNG00000020177) #33	MACROH2A2 (ENSPSNG00000020131) #34	COL13A1 (ENSPSNG00000019849) #35	FAM241B (ENSPSNG00000019661) #36	NEUROG3 (ENSPSNG00000019648) #37	TSPAN15 (ENSPSNG00000019618)
Dolphin	MODERN SPECIES	3764															ADAMTS14 (ENSTTRG00000007617) #21	PRF1 (ENSTTRG00000007613) #22
Sperm whale	MODERN SPECIES	12	OIT3 (ENSPCTG00005016947)	ENSPCTG00005016898	MCU (ENSPCTG00005016821)	MICU1 (ENSPCTG00005016668)	ANAPC16 (ENSPCTG00005016583)	ASCC1 (ENSPCTG00005016464) #7	ENSPCTG00005016423 #9	CHST3 (ENSPCTG00005016377) #10	VSIR (ENSPCTG00005016352)	C20H10orf105 (ENSPCTG00005016335) #14	ENSPCTG00005016034 #12	SLC29A3 (ENSPCTG00005015832) #16	PCBD1 (ENSPCTG00005015772) #18	SGPL1 (ENSPCTG00005015728) #19	ADAMTS14 (ENSPCTG00005015211) #21	PRF1 (ENSPCTG00005015153) #22	PALD1 (ENSPCTG00005014988) #23	NODAL (ENSPCTG00005014924) #24	EIF4EBP2 (ENSPCTG00005014870) #25	ENSPCTG00005014824	ENSPCTG00005014776	ENSPCTG00005014625 #27	PPA1 (ENSPCTG00005014580) #30	SAR1A (ENSPCTG00005014528) #31	TYSND1 (ENSPCTG00005014466) #32	AIFM2 (ENSPCTG00005014407) #33	MACROH2A2 (ENSPCTG00005014364) #34	COL13A1 (ENSPCTG00005007462) #35	FAM241B (ENSPCTG00005006794) #36	NEUROG3 (ENSPCTG00005006773) #37	ENSPCTG00005006757
Blue whale	MODERN SPECIES	7	ENSBMSG00010014165	DDIT4 (ENSBMSG00010014188)	ENSBMSG00010014216	ASCC1 (ENSBMSG00010014274) #7	SPOCK2 (ENSBMSG00010014327) #9	ENSBMSG00010014391	CHST3 (ENSBMSG00010014411) #10	PSAP (ENSBMSG00010014455) #11	CDH23 (ENSBMSG00010014850) #12	VSIR (ENSBMSG00010016464)	SLC29A3 (ENSBMSG00010016523) #15	UNC5B (ENSBMSG00010016561) #16	SGPL1 (ENSBMSG00010016639) #19	TBATA (ENSBMSG00010016695) #20	ADAMTS14 (ENSBMSG00010016763) #21	PRF1 (ENSBMSG00010016858) #22	PALD1 (ENSBMSG00010016880) #23	NODAL (ENSBMSG00010016907) #24	EIF4EBP2 (ENSBMSG00010016927) #25	ENSBMSG00010016948	LRRC20 (ENSBMSG00010016966) #27	NPFFR1 (ENSBMSG00010016996) #29	ENSBMSG00010017012 #30	SAR1A (ENSBMSG00010017041) #31	TYSND1 (ENSBMSG00010017063) #32	AIFM2 (ENSBMSG00010017088) #33	MACROH2A2 (ENSBMSG00010017113) #34	COL13A1 (ENSBMSG00010018272) #35	FAM241B (ENSBMSG00010022278) #36	NEUROG3 (ENSBMSG00010022279) #37	TSPAN15 (ENSBMSG00010022282)
Pecora	ANCESTRAL SPECIES	12	ENSGT00530000063652.b	ENSGT00390000018109	ENSGT00390000018119 #7	ENSGT00940000157107 #9	ENSGT00940000161045 #10	ENSGT00940000156695.f #11	ENSGT00940000163256	ENSGT00490000043902 #14	ENSGT00940000155245 #12	ENSGT00950000182898.a.a.b #15	ENSGT00950000182815.a.a.a.b #16	ENSGT00390000007221.a.b #18	ENSGT00390000000046 #19	ENSGT00510000048896 #20	ENSGT00940000158426 #21	ENSGT00530000063725 #22	ENSGT00390000005448 #23	ENSGT00940000160223 #24	ENSGT00940000155342 #25	ENSGT00730000111199 #27	ENSGT01070000253744.b.a.b #29	ENSGT00390000017004.a.b #30	ENSGT00940000155276 #31	ENSGT00910000146657	ENSGT00390000014627 #32	ENSGT00390000004582 #33	ENSGT00940000158120 #34	ENSGT00940000154865 #35	ENSGT00940000154340.B #36	ENSGT00940000163077 #37	ENSGT00940000157973
Percora_a	ANCESTRAL SPECIES	14	ENSGT00530000063652.b	ENSGT00390000018109	ENSGT00390000018119 #7	ENSGT00940000157107 #9	ENSGT00940000161045 #10	ENSGT00940000156695.f #11	ENSGT00940000163256	ENSGT00490000043902 #14	ENSGT00940000155245 #12	ENSGT00950000182898.a.a.b #15	ENSGT00950000182815.a.a.a.b #16	ENSGT00390000007221.a.b #18	ENSGT00390000000046 #19	ENSGT00510000048896 #20	ENSGT00940000158426 #21	ENSGT00530000063725 #22	ENSGT00390000005448 #23	ENSGT00940000160223 #24	ENSGT00940000155342 #25	ENSGT00730000111199 #27	ENSGT01070000253744.b.a.b #29	ENSGT00390000017004.a.b #30	ENSGT00940000155276 #31	ENSGT00910000146657	ENSGT00390000014627 #32	ENSGT00390000004582 #33	ENSGT00940000158120 #34	ENSGT00940000154865 #35	ENSGT00940000154340.B #36	ENSGT00940000163077 #37	ENSGT00940000157973
Bovidae	ANCESTRAL SPECIES	27	ENSGT00390000018109	ENSGT00950000182869.e.b.b	ENSGT00390000018119 #7	ENSGT00940000157107 #9	ENSGT00940000161045 #10	ENSGT00940000156695.f #11	ENSGT00940000163256	ENSGT00490000043902 #14	ENSGT00940000155245 #12	ENSGT00950000182898.a.a.b #15	ENSGT00950000182815.a.a.a.b #16	ENSGT00390000007221.a.b #18	ENSGT00390000000046 #19	ENSGT00510000048896 #20	ENSGT00940000158426 #21	ENSGT00530000063725 #22	ENSGT00390000005448 #23	ENSGT00940000160223 #24	ENSGT00940000155342 #25	ENSGT00730000111199 #27	ENSGT01070000253744.b.a.b #29	ENSGT00390000017004.a.b #30	ENSGT00940000155276 #31	ENSGT00910000146657	ENSGT00390000014627 #32	ENSGT00390000004582 #33	ENSGT00940000158120 #34	ENSGT00940000154865 #35	ENSGT00940000154340.B #36	ENSGT00940000163077 #37	ENSGT00940000157973
Bovinae	ANCESTRAL SPECIES	30	ENSGT00390000018109	ENSGT00950000182869.e.b.b	ENSGT00390000018119 #7	ENSGT00940000157107 #9	ENSGT00940000161045 #10	ENSGT00940000156695.f #11	ENSGT00940000155245 #12	ENSGT00940000163256	ENSGT00490000043902 #14	ENSGT00950000182898.a.a.b #15	ENSGT00950000182815.a.a.a.b #16	ENSGT00390000007221.a.b #18	ENSGT00390000000046 #19	ENSGT00510000048896 #20	ENSGT00940000158426 #21	ENSGT00530000063725 #22	ENSGT00390000005448 #23	ENSGT00940000160223 #24	ENSGT00940000155342 #25	ENSGT00730000111199 #27	ENSGT01070000253744.b.a.b #29	ENSGT00390000017004.a.b #30	ENSGT00940000155276 #31	ENSGT00390000014627 #32	ENSGT00390000004582 #33	ENSGT00940000158120 #34	ENSGT00940000154865 #35	ENSGT00940000154340.B #36	ENSGT00940000163077 #37	ENSGT00940000157973	ENSGT00940000155512
American bison	MODERN SPECIES	3223	ANAPC16 (ENSBBBG00000020795)	ENSBBBG00000020798	ASCC1 (ENSBBBG00000020879) #7	SPOCK2 (ENSBBBG00000020922) #9	ENSBBBG00000020934	PSAP (ENSBBBG00000020979) #11	ENSBBBG00000021057 #13	C10orf105 (ENSBBBG00000021078) #14	CDH23 (ENSBBBG00000021448) #12	SLC29A3 (ENSBBBG00000021493) #15	UNC5B (ENSBBBG00000021557) #16	PCBD1 (ENSBBBG00000021581) #18	SGPL1 (ENSBBBG00000005744) #19	TBATA (ENSBBBG00000021619) #20	ADAMTS14 (ENSBBBG00000021657) #21	PRF1 (ENSBBBG00000007332) #22	PALD1 (ENSBBBG00000021700) #23	NODAL (ENSBBBG00000005770) #24	EIF4EBP2 (ENSBBBG00000021726) #25	LRRC20 (ENSBBBG00000021778) #27	PPA1 (ENSBBBG00000021831) #30	SAR1A (ENSBBBG00000021871) #31	AIFM2 (ENSBBBG00000007154) #33	MACROH2A2 (ENSBBBG00000021899) #34	COL13A1 (ENSBBBG00000022816) #35	FAM241B (ENSBBBG00000022921) #36	NEUROG3 (ENSBBBG00000006024) #37	TSPAN15 (ENSBBBG00000022956)	TACR2 (ENSBBBG00000006029)	HK1 (ENSBBBG00000000446)	HKDC1 (ENSBBBG00000000381)
Bos	ANCESTRAL SPECIES	27	ENSGT00950000182869.e.b.b.eb	ENSGT00390000018119 #7	ENSGT00940000157107 #9	ENSGT00940000161045 #10	ENSGT00940000156695.f #11	ENSGT00940000163256	ENSGT00490000043902 #14	ENSGT00940000155245 #12	ENSGT00950000182898.a.a.b #15	ENSGT00950000182815.a.a.a.b #16	ENSGT00390000007221.a.b #18	ENSGT01100000263481.n.a.a.a.b.a.b.b.a	ENSGT00390000000046 #19	ENSGT00510000048896 #20	ENSGT00940000158426 #21	ENSGT00530000063725 #22	ENSGT00390000005448 #23	ENSGT00940000160223 #24	ENSGT00940000155342 #25	ENSGT00730000111199 #27	ENSGT01070000253744.b.a.b #29	ENSGT00390000017004.a.b #30	ENSGT00940000155276 #31	ENSGT00390000014627 #32	ENSGT00390000004582 #33	ENSGT00940000158120 #34	ENSGT00940000154865 #35	ENSGT00940000154340.B #36	ENSGT00940000163077 #37	ENSGT00940000157973	ENSGT00940000155512
Bos_a	ANCESTRAL SPECIES	25	ENSGT00390000018119 #7	ENSGT00940000157107 #9	ENSGT00940000164185	ENSGT00940000161045 #10	ENSGT00940000156695.f #11	ENSGT00940000155245 #12	ENSGT00940000163256	ENSGT00490000043902 #14	ENSGT00950000182898.a.a.b #15	ENSGT00950000182815.a.a.a.b #16	ENSGT00390000007221.a.b #18	ENSGT01100000263481.n.a.a.a.b.a.b.b.a	ENSGT00390000000046 #19	ENSGT00510000048896 #20	ENSGT00940000158426 #21	ENSGT00530000063725 #22	ENSGT00390000005448 #23	ENSGT00940000160223 #24	ENSGT00940000155342 #25	ENSGT00730000111199 #27	ENSGT01070000253744.b.a.b #29	ENSGT00390000017004.a.b #30	ENSGT00940000155276.h #31	ENSGT00390000014627 #32	ENSGT00390000004582 #33	ENSGT00940000158120 #34	ENSGT00940000154865 #35	ENSGT00940000154340.B #36	ENSGT00940000163077 #37	ENSGT00940000157973	ENSGT00940000155512
Domestic yak	MODERN SPECIES	19	SPOCK2 (ENSBGRG00000024001) #9	ENSBGRG00000023984	ENSBGRG00000023970	CHST3 (ENSBGRG00000023934) #10	PSAP (ENSBGRG00000023769) #11	VSIR (ENSBGRG00000023721)	ENSBGRG00000023710 #14	CDH23 (ENSBGRG00000023095) #12	SLC29A3 (ENSBGRG00000022994) #15	UNC5B (ENSBGRG00000022844) #16	PCBD1 (ENSBGRG00000022799) #18	ENSBGRG00000022787	SGPL1 (ENSBGRG00000022683) #19	TBATA (ENSBGRG00000022601) #20	ADAMTS14 (ENSBGRG00000022489) #21	PRF1 (ENSBGRG00000022450) #22	PALD1 (ENSBGRG00000022406) #23	NODAL (ENSBGRG00000022380) #24	EIF4EBP2 (ENSBGRG00000022345) #25	LRRC20 (ENSBGRG00000022204) #27	NPFFR1 (ENSBGRG00000022142) #29	PPA1 (ENSBGRG00000021913) #30	ENSBGRG00000021791 #31	TYSND1 (ENSBGRG00000021766) #32	AIFM2 (ENSBGRG00000021724) #33	MACROH2A2 (ENSBGRG00000021658) #34	COL13A1 (ENSBGRG00000013873) #35	FAM241B (ENSBGRG00000013521) #36	NEUROG3 (ENSBGRG00000013502) #37	TSPAN15 (ENSBGRG00000013254)	TACR2 (ENSBGRG00000013194)
Wild yak	MODERN SPECIES	1622																PRF1 (ENSBMUG00000016885) #22	PALD1 (ENSBMUG00000016854) #23	NODAL (ENSBMUG00000016793) #24	EIF4EBP2 (ENSBMUG00000016770) #25	LRRC20 (ENSBMUG00000016738) #27	NPFFR1 (ENSBMUG00000016685) #29	PPA1 (ENSBMUG00000016671) #30	SAR1A (ENSBMUG00000016616) #31	ENSBMUG00000016573 #32	AIFM2 (ENSBMUG00000016562) #33	MACROH2A2 (ENSBMUG00000016549) #34	COL13A1 (ENSBMUG00000015879) #35	FAM241B (ENSBMUG00000014859) #36	NEUROG3 (ENSBMUG00000014847) #37	TSPAN15 (ENSBMUG00000014833)	TACR2 (ENSBMUG00000014822)
Bos_b	ANCESTRAL SPECIES	32	ENSGT00950000182869.e.b.b.eb	ENSGT00390000018119 #7	ENSGT00940000157107 #9	ENSGT00940000161045 #10	ENSGT00940000156695.f #11	ENSGT00940000163256	ENSGT00490000043902 #14	ENSGT00940000155245 #12	ENSGT00950000182898.a.a.b #15	ENSGT00950000182815.a.a.a.b #16	ENSGT00390000007221.a.b #18	ENSGT01100000263481.n.a.a.a.b.a.b.b.a	ENSGT00390000000046 #19	ENSGT00510000048896 #20	ENSGT00940000158426 #21	ENSGT00530000063725 #22	ENSGT00390000005448 #23	ENSGT00940000160223 #24	ENSGT00940000155342 #25	ENSGT00730000111199 #27	ENSGT01070000253744.b.a.b #29	ENSGT00390000017004.a.b #30	ENSGT00940000155276 #31	ENSGT00390000014627 #32	ENSGT00390000004582 #33	ENSGT00940000158120 #34	ENSGT00940000154865 #35	ENSGT00940000154340.B #36	ENSGT00940000163077 #37	ENSGT00940000157973	ENSGT00940000155512
Cow	MODERN SPECIES	20	ENSBTAG00000052269	ASCC1 (ENSBTAG00000000392) #7	SPOCK2 (ENSBTAG00000008827) #9	CHST3 (ENSBTAG00000011014)	PSAP (ENSBTAG00000021499) #11	VSIR (ENSBTAG00000010888)	C28H10orf105 (ENSBTAG00000045826) #14	CDH23 (ENSBTAG00000021497) #12	SLC29A3 (ENSBTAG00000046357) #15	UNC5B (ENSBTAG00000014270) #16	PCBD1 (ENSBTAG00000011866) #18	ENSBTAG00000054819	SGPL1 (ENSBTAG00000009984) #19	TBATA (ENSBTAG00000021180) #20	ADAMTS14 (ENSBTAG00000021177) #21	PRF1 (ENSBTAG00000001008) #22	PALD1 (ENSBTAG00000008583) #23	NODAL (ENSBTAG00000013090) #24	EIF4EBP2 (ENSBTAG00000053726) #25	LRRC20 (ENSBTAG00000005666) #27	NPFFR1 (ENSBTAG00000010930) #29	PPA1 (ENSBTAG00000007836) #30	SAR1A (ENSBTAG00000016858) #31	TYSND1 (ENSBTAG00000038845) #32	AIFM2 (ENSBTAG00000001165) #33	MACROH2A2 (ENSBTAG00000001163) #34	COL13A1 (ENSBTAG00000011741) #35	FAM241B (ENSBTAG00000016527) #36	NEUROG3 (ENSBTAG00000006431) #37	TSPAN15 (ENSBTAG00000000224)	TACR2 (ENSBTAG00000021664)
Hybrid Bos Indicus	MODERN SPECIES	20	ANAPC16 (ENSBIXG00005016119)	ENSBIXG00005002565	ASCC1 (ENSBIXG00005016184) #7	SPOCK2 (ENSBIXG00005016258) #9	CHST3 (ENSBIXG00005002591) #10	PSAP (ENSBIXG00005000092) #11	VSIR (ENSBIXG00005002601)	C10orf105 (ENSBIXG00005007031) #14	CDH23 (ENSBIXG00005016462) #12	SLC29A3 (ENSBIXG00005016509) #15	UNC5B (ENSBIXG00005016596) #16	PCBD1 (ENSBIXG00005016622) #18	SGPL1 (ENSBIXG00005016659) #19	TBATA (ENSBIXG00005016677) #20	ADAMTS14 (ENSBIXG00005016702) #21	PRF1 (ENSBIXG00005002706) #22	PALD1 (ENSBIXG00005016834) #23	NODAL (ENSBIXG00005016854) #24	EIF4EBP2 (ENSBIXG00005007045) #25	LRRC20 (ENSBIXG00005016961) #27	NPFFR1 (ENSBIXG00005016996) #29	PPA1 (ENSBIXG00005017018) #30	ENSBIXG00005002767	SAR1A (ENSBIXG00005002778) #31	TYSND1 (ENSBIXG00005017117) #32	AIFM2 (ENSBIXG00005017200) #33	MACROH2A2 (ENSBIXG00005017229) #34	COL13A1 (ENSBIXG00005002845) #35	ENSBIXG00005017614 #36	NEUROG3 (ENSBIXG00005017625) #37	TSPAN15 (ENSBIXG00005017679)
Caprinae	ANCESTRAL SPECIES	26	ENSGT00390000018109	ENSGT00950000182869.e.b.b.gb.b	ENSGT00390000018119 #7	ENSGT00940000157107 #9	ENSGT00940000161045 #10	ENSGT00940000156695.f #11	ENSGT00940000163256	ENSGT00490000043902 #14	ENSGT00940000155245 #12	ENSGT00950000182898.a.a.b #15	ENSGT00950000182815.a.a.a.b #16	ENSGT00390000007221.a.b #18	ENSGT00390000000046 #19	ENSGT00510000048896 #20	ENSGT00940000158426 #21	ENSGT00530000063725 #22	ENSGT00390000005448 #23	ENSGT00940000160223 #24	ENSGT00940000155342 #25	ENSGT00730000111199 #27	ENSGT01070000253744.b.a.b #29	ENSGT00390000017004.a.b #30	ENSGT00940000155276 #31	ENSGT00910000146657	ENSGT00390000014627 #32	ENSGT00390000004582 #33	ENSGT00940000158120 #34	ENSGT00940000154865 #35	ENSGT00940000154340.B #36	ENSGT00940000163077 #37	ENSGT00940000157973
Goat	MODERN SPECIES	20	ANAPC16 (ENSCHIG00000016314)	ASCC1 (ENSCHIG00000020844) #7	ENSCHIG00000000466	SPOCK2 (ENSCHIG00000011768) #9	ENSCHIG00000015986	ENSCHIG00000020392	PSAP (ENSCHIG00000005604) #11	CDH23 (ENSCHIG00000013062) #12	VSIR (ENSCHIG00000005813)	SLC29A3 (ENSCHIG00000016832) #15	UNC5B (ENSCHIG00000012534) #16	PCBD1 (ENSCHIG00000021110) #18	SGPL1 (ENSCHIG00000014092) #19	TBATA (ENSCHIG00000025343) #20	ADAMTS14 (ENSCHIG00000014961) #21	PRF1 (ENSCHIG00000000135) #22	PALD1 (ENSCHIG00000000205) #23	NODAL (ENSCHIG00000000383) #24	EIF4EBP2 (ENSCHIG00000000417) #25	LRRC20 (ENSCHIG00000009889) #27	NPFFR1 (ENSCHIG00000009482) #29	PPA1 (ENSCHIG00000016191) #30	SAR1A (ENSCHIG00000018882) #31	ENSCHIG00000024778	TYSND1 (ENSCHIG00000000064) #32	AIFM2 (ENSCHIG00000000099) #33	MACROH2A2 (ENSCHIG00000000171) #34	COL13A1 (ENSCHIG00000000253) #35	FAM241B (ENSCHIG00000014391) #36	NEUROG3 (ENSCHIG00000020271) #37	TSPAN15 (ENSCHIG00000019354)
Rambouillet Sheep	MODERN SPECIES	17	ENSOARG00020019609	ASCC1 (ENSOARG00020019484) #7	SPOCK2 (ENSOARG00020019381) #9	CHST3 (ENSOARG00020019354) #10	PSAP (ENSOARG00020019196) #11	VSIR (ENSOARG00020019064)	C10orf105 (ENSOARG00020019031) #14	CDH23 (ENSOARG00020014609) #12	SLC29A3 (ENSOARG00020014446) #15	UNC5B (ENSOARG00020014296) #16	PCBD1 (ENSOARG00020014228) #18	ENSOARG00020014160	SGPL1 (ENSOARG00020014065) #19	TBATA (ENSOARG00020013973) #20	ADAMTS14 (ENSOARG00020013561) #21	PRF1 (ENSOARG00020013519) #22	PALD1 (ENSOARG00020013220) #23	NODAL (ENSOARG00020013160) #24	EIF4EBP2 (ENSOARG00020013114) #25	LRRC20 (ENSOARG00020012862) #27	NPFFR1 (ENSOARG00020012791) #29	PPA1 (ENSOARG00020012693) #30	SAR1A (ENSOARG00020012573) #31	TYSND1 (ENSOARG00020012522) #32	H2AFY2 (ENSOARG00020012361) #34	COL13A1 (ENSOARG00020011395) #35	ENSOARG00020011259	FAM241B (ENSOARG00020011204) #36	NEUROG3 (ENSOARG00020011183) #37	TSPAN15 (ENSOARG00020011116)	TACR2 (ENSOARG00020011038)
Siberian musk deer	MODERN SPECIES	1227	ANAPC16 (ENSMMSG00000009645)	ENSMMSG00000009634	ASCC1 (ENSMMSG00000009578) #7	SPOCK2 (ENSMMSG00000009487) #9	ENSMMSG00000009451	PSAP (ENSMMSG00000009378) #11	VSIR (ENSMMSG00000009345)	C10orf105 (ENSMMSG00000009325) #14	CDH23 (ENSMMSG00000008341) #12	SLC29A3 (ENSMMSG00000008235) #15	UNC5B (ENSMMSG00000008054) #16	PCBD1 (ENSMMSG00000008012) #18	SGPL1 (ENSMMSG00000007975) #19	TBATA (ENSMMSG00000007916) #20	ADAMTS14 (ENSMMSG00000007857) #21	PRF1 (ENSMMSG00000007825) #22	PALD1 (ENSMMSG00000007768) #23	NODAL (ENSMMSG00000007744) #24	EIF4EBP2 (ENSMMSG00000007728) #25	LRRC20 (ENSMMSG00000007657) #27	NPFFR1 (ENSMMSG00000007616) #29	PPA1 (ENSMMSG00000024361) #30	SAR1A (ENSMMSG00000024360) #31	TYSND1 (ENSMMSG00000024358) #32	AIFM2 (ENSMMSG00000024356) #33	MACROH2A2 (ENSMMSG00000024354) #34	COL13A1 (ENSMMSG00000023599) #35	FAM241B (ENSMMSG00000023406) #36	NEUROG3 (ENSMMSG00000023401) #37	TSPAN15 (ENSMMSG00000023392)	TACR2 (ENSMMSG00000023382)
Yarkand deer	MODERN SPECIES	6	ASCC1 (ENSCHYG00000021605) #7	SPOCK2 (ENSCHYG00000021397) #9	ENSCHYG00000021363	ENSCHYG00000021344	PSAP (ENSCHYG00000021219) #11	VSIR (ENSCHYG00000021128)	ENSCHYG00000021011 #14	ENSCHYG00000020973	CDH23 (ENSCHYG00000020685) #12	SLC29A3 (ENSCHYG00000020569) #15	UNC5B (ENSCHYG00000020329) #16	PCBD1 (ENSCHYG00000020254) #18	SGPL1 (ENSCHYG00000020136) #19	TBATA (ENSCHYG00000020040) #20	ADAMTS14 (ENSCHYG00000018984) #21	PRF1 (ENSCHYG00000018881) #22	PALD1 (ENSCHYG00000018335) #23	NODAL (ENSCHYG00000018236) #24	EIF4EBP2 (ENSCHYG00000018197) #25	LRRC20 (ENSCHYG00000017938) #27	NPFFR1 (ENSCHYG00000017886) #29	ENSCHYG00000017704 #30	ENSCHYG00000017615 #31	TYSND1 (ENSCHYG00000017542) #32	AIFM2 (ENSCHYG00000017431) #33	ENSCHYG00000017348 #34	COL13A1 (ENSCHYG00000007754) #35	ENSCHYG00000007385 #36	NEUROG3 (ENSCHYG00000007369) #37	TSPAN15 (ENSCHYG00000007342)	TACR2 (ENSCHYG00000007301)
Camelidae	ANCESTRAL SPECIES	4	ENSGT00530000063652.b	ENSGT00390000018109	ENSGT00390000018119 #7	ENSGT00940000157107 #9	ENSGT00940000164185	ENSGT00940000156695.f #11	ENSGT00940000155245 #12	ENSGT00940000163256	ENSGT00490000043902 #14	ENSGT00950000182898.a.a.b #15	ENSGT00950000182815.a.a.a.b #16	ENSGT00390000007221.a.b #18	ENSGT00390000000046 #19	ENSGT00510000048896 #20	ENSGT00940000158426 #21	ENSGT00530000063725 #22	ENSGT00390000005448 #23	ENSGT00940000160223 #24	ENSGT00940000155342 #25	ENSGT00730000111199.a #27	ENSGT01070000253744.b.a.b #29	ENSGT00390000017004.a.b #30	ENSGT00940000155276 #31	ENSGT00910000146657	ENSGT00390000014627 #32	ENSGT00390000004582 #33	ENSGT00940000158120 #34	ENSGT00940000154865 #35	ENSGT00940000154340.B #36	ENSGT00940000163077 #37	ENSGT00940000157973
Arabian camel	MODERN SPECIES	2	ANAPC16 (ENSCDRG00005011452)	ASCC1 (ENSCDRG00005011365) #7	SPOCK2 (ENSCDRG00005011109) #9	ENSCDRG00005011068	PSAP (ENSCDRG00005011041) #11	VSIR (ENSCDRG00005011001)	C10orf105 (ENSCDRG00005010993) #14	CDH23 (ENSCDRG00005010398) #12	SLC29A3 (ENSCDRG00005010230) #15	UNC5B (ENSCDRG00005009955) #16	ENSCDRG00005009890	PCBD1 (ENSCDRG00005009784) #18	SGPL1 (ENSCDRG00005009700) #19	TBATA (ENSCDRG00005009574) #20	ADAMTS14 (ENSCDRG00005009401) #21	PRF1 (ENSCDRG00005009358) #22	PALD1 (ENSCDRG00005009266) #23	NODAL (ENSCDRG00005009212) #24	EIF4EBP2 (ENSCDRG00005009176) #25	ENSCDRG00005008949 #27	NPFFR1 (ENSCDRG00005008809) #29	ENSCDRG00005008795	PPA1 (ENSCDRG00005008721) #30	SAR1A (ENSCDRG00005008661) #31	ENSCDRG00005008635	TYSND1 (ENSCDRG00005008594) #32	AIFM2 (ENSCDRG00005008474) #33	MACROH2A2 (ENSCDRG00005008428) #34	COL13A1 (ENSCDRG00005007677) #35	FAM241B (ENSCDRG00005007554) #36	NEUROG3 (ENSCDRG00005007536) #37
Laurasiatheria_b	ANCESTRAL SPECIES	15	ENSGT00940000157107 #9	ENSGT00940000164185	ENSGT00910000147834	ENSGT00940000161045 #10	ENSGT00940000156695.f #11	ENSGT00940000163256	ENSGT00490000043902 #14	ENSGT00940000155245 #12	ENSGT00940000163216 #13	ENSGT00950000182898.a.a.b #15	ENSGT00950000182815.a.a.a.b #16	ENSGT00390000007221.a.b #18	ENSGT00390000000046 #19	ENSGT00510000048896 #20	ENSGT00940000158426 #21	ENSGT00530000063725 #22	ENSGT00390000005448 #23	ENSGT00940000160223 #24	ENSGT00940000155342 #25	ENSGT00730000111199 #27	ENSGT01070000253744.b.a.b #29	ENSGT00390000017004.a.b #30	ENSGT00940000155276 #31	ENSGT00910000146657	ENSGT00390000014627 #32	ENSGT00390000004582 #33	ENSGT00940000158120 #34	ENSGT00940000154865 #35	ENSGT00940000154340.B #36	ENSGT00940000163077 #37	ENSGT00940000157973
Carnivora	ANCESTRAL SPECIES	16	ENSGT00940000157107 #9	ENSGT00940000164185	ENSGT00910000147834	ENSGT00940000161045 #10	ENSGT00940000156695.f #11	ENSGT00940000163256	ENSGT00940000155245 #12	ENSGT00940000163216 #13	ENSGT00490000043902 #14	ENSGT00950000182898.a.a.b #15	ENSGT00950000182815.a.a.a.b #16	ENSGT00390000007221.a.b #18	ENSGT00390000000046 #19	ENSGT00510000048896 #20	ENSGT00940000158426 #21	ENSGT00530000063725 #22	ENSGT00390000005448 #23	ENSGT00940000160223 #24	ENSGT00940000155342 #25	ENSGT00730000111199 #27	ENSGT01070000253744.b.a.b #29	ENSGT00390000017004.a.b #30	ENSGT00940000155276 #31	ENSGT00910000146657	ENSGT00390000014627 #32	ENSGT00390000004582 #33	ENSGT00940000158120 #34	ENSGT00940000154865 #35	ENSGT00940000154340.B #36	ENSGT00940000163077 #37	ENSGT00940000157973
Caniformia	ANCESTRAL SPECIES	13	ENSGT00390000018119 #7	ENSGT00940000157107 #9	ENSGT00940000164185	ENSGT00910000147834	ENSGT00940000161045 #10	ENSGT00940000156695.f #11	ENSGT00940000163256	ENSGT00490000043902 #14	ENSGT00940000155245 #12	ENSGT00950000182898.a.a.b #15	ENSGT00950000182815.a.a.a.b #16	ENSGT00390000007221.a.b #18	ENSGT00390000000046 #19	ENSGT00510000048896 #20	ENSGT00940000158426 #21	ENSGT00530000063725 #22	ENSGT00390000005448 #23	ENSGT00940000160223 #24	ENSGT00940000155342 #25	ENSGT00730000111199 #27	ENSGT01070000253744.b.a.b #29	ENSGT00390000017004.a.b #30	ENSGT00940000155276 #31	ENSGT00910000146657	ENSGT00390000014627 #32	ENSGT00390000004582 #33	ENSGT00940000158120 #34	ENSGT00940000154865 #35	ENSGT00940000154340.B #36	ENSGT00940000163077 #37	ENSGT00940000157973
Caniformia_b	ANCESTRAL SPECIES	10	ENSGT00530000063652.b	ENSGT00390000018109	ENSGT00390000018119 #7	ENSGT00940000157107 #9	ENSGT00940000164185	ENSGT00940000156695.f #11	ENSGT00940000163256	ENSGT00490000043902 #14	ENSGT00940000155245 #12	ENSGT00950000182898.a.a.b #15	ENSGT00950000182815.a.a.a.b #16	ENSGT00390000007221.a.b #18	ENSGT00390000000046 #19	ENSGT00510000048896 #20	ENSGT00940000158426 #21	ENSGT00530000063725 #22	ENSGT00390000005448 #23	ENSGT00940000160223 #24	ENSGT00940000155342 #25	ENSGT00730000111199 #27	ENSGT01070000253744.b.a.b #29	ENSGT00390000017004.a.b #30	ENSGT00940000155276 #31	ENSGT00910000146657	ENSGT00390000014627 #32	ENSGT00390000004582 #33	ENSGT00940000158120 #34	ENSGT00940000154865 #35	ENSGT00940000154340.B #36	ENSGT00940000163077 #37	ENSGT00940000157973
Ursidae	ANCESTRAL SPECIES	5	ENSGT00530000063652.b	ENSGT00390000018109	ENSGT00390000018119 #7	ENSGT00940000157107 #9	ENSGT00940000164185	ENSGT00940000156695.f #11	ENSGT00940000163256	ENSGT00490000043902 #14	ENSGT00940000155245 #12	ENSGT00950000182898.a.a.b #15	ENSGT00950000182815.a.a.a.b #16	ENSGT00390000007221.a.b #18	ENSGT00390000000046 #19	ENSGT00510000048896 #20	ENSGT00940000158426 #21	ENSGT00530000063725 #22	ENSGT00390000005448 #23	ENSGT00940000160223 #24	ENSGT00940000155342 #25	ENSGT00730000111199 #27	ENSGT01070000253744.b.a.b #29	ENSGT00390000017004.a.b #30	ENSGT00940000155276 #31	ENSGT00910000146657	ENSGT00390000004582 #33	ENSGT00940000158120 #34	ENSGT00940000154865 #35	ENSGT00940000154340.B #36	ENSGT00940000163077 #37	ENSGT00940000157973	ENSGT00940000155512
Ursus	ANCESTRAL SPECIES	6	ENSGT00390000018119 #7	ENSGT00940000157107 #9	ENSGT00940000164185	ENSGT00940000156695.f #11	ENSGT00940000163256	ENSGT00940000163216 #13	ENSGT00490000043902 #14	ENSGT00940000155245 #12	ENSGT00950000182898.a.a.b #15	ENSGT00950000182815.a.a.a.b #16	ENSGT01050000248355	ENSGT00390000007221.a.b #18	ENSGT00390000000046 #19	ENSGT00510000048896 #20	ENSGT00940000158426 #21	ENSGT00530000063725 #22	ENSGT00390000005448 #23	ENSGT00940000160223 #24	ENSGT00940000155342 #25	ENSGT00730000111199 #27	ENSGT01070000253744.b.a.b #29	ENSGT00390000017004.a.b #30	ENSGT00940000155276 #31	ENSGT00910000146657	ENSGT00390000004582 #33	ENSGT00940000158120 #34	ENSGT00940000154340.B #36	ENSGT00940000163077 #37	ENSGT00940000157973	ENSGT00940000155512	ENSGT00950000182787.A
American black bear	MODERN SPECIES	2141															ADAMTS14 (ENSUAMG00000016677) #21	PRF1 (ENSUAMG00000016674) #22	PALD1 (ENSUAMG00000016591) #23
Polar bear	MODERN SPECIES	197	DDIT4 (ENSUMAG00000008971)	ANAPC16 (ENSUMAG00000008968)	ASCC1 (ENSUMAG00000008959) #7	SPOCK2 (ENSUMAG00000008903) #9	PSAP (ENSUMAG00000008862) #11	ENSUMAG00000008859 #13	C10orf105 (ENSUMAG00000008857) #14	CDH23 (ENSUMAG00000008292) #12	SLC29A3 (ENSUMAG00000008199) #15	UNC5B (ENSUMAG00000008182) #16	ENSUMAG00000008171	PCBD1 (ENSUMAG00000008163) #18	SGPL1 (ENSUMAG00000008160) #19	TBATA (ENSUMAG00000008135) #20	ADAMTS14 (ENSUMAG00000008041) #21	PRF1 (ENSUMAG00000008031) #22	PALD1 (ENSUMAG00000008007) #23	ENSUMAG00000007977 #24	EIF4EBP2 (ENSUMAG00000007968) #25	LRRC20 (ENSUMAG00000007964) #27	PPA1 (ENSUMAG00000007936) #30	SAR1A (ENSUMAG00000007921) #31	ENSUMAG00000007919	AIFM2 (ENSUMAG00000007905) #33	MACROH2A2 (ENSUMAG00000007882) #34	FAM241B (ENSUMAG00000007856) #36	NEUROG3 (ENSUMAG00000007852) #37	TSPAN15 (ENSUMAG00000007831)	TACR2 (ENSUMAG00000007801)	HK1 (ENSUMAG00000007789)	HKDC1 (ENSUMAG00000007779)
Giant Panda	MODERN SPECIES	16	ANAPC16 (ENSAMEG00000017397)	ASCC1 (ENSAMEG00000017400) #7	SPOCK2 (ENSAMEG00000017406) #9	ENSAMEG00000017622	ENSAMEG00000017627 #11	VSIR (ENSAMEG00000017726)	C10orf105 (ENSAMEG00000024733) #14	ENSAMEG00000017649 #12	ENSAMEG00000026866 #12	SLC29A3 (ENSAMEG00000017739) #15	UNC5B (ENSAMEG00000017743) #16	PCBD1 (ENSAMEG00000017777) #18	SGPL1 (ENSAMEG00000017782) #19	TBATA (ENSAMEG00000017797) #20	ADAMTS14 (ENSAMEG00000017807) #21	PRF1 (ENSAMEG00000024297) #22	PALD1 (ENSAMEG00000017827) #23	NODAL (ENSAMEG00000017846) #24	ENSAMEG00000024095 #25	LRRC20 (ENSAMEG00000017850) #27	NPFFR1 (ENSAMEG00000017851) #29	PPA1 (ENSAMEG00000017855) #30	SAR1A (ENSAMEG00000017868) #31	ENSAMEG00000030241	AIFM2 (ENSAMEG00000017876) #33	MACROH2A2 (ENSAMEG00000017881) #34	COL13A1 (ENSAMEG00000017892) #35	FAM241B (ENSAMEG00000017908) #36	NEUROG3 (ENSAMEG00000019033) #37	TSPAN15 (ENSAMEG00000017910)	TACR2 (ENSAMEG00000017918)
Mustelinae	ANCESTRAL SPECIES	31	ENSGT00530000063652.b	ENSGT00390000018109	ENSGT00390000018119 #7	ENSGT00940000157107 #9	ENSGT00940000164185	ENSGT00940000156695.f #11	ENSGT00940000155245 #12	ENSGT00940000163256	ENSGT00490000043902 #14	ENSGT00950000182898.a.a.b #15	ENSGT00950000182815.a.a.a.b #16	ENSGT00390000007221.a.b #18	ENSGT00390000000046 #19	ENSGT00510000048896 #20	ENSGT00940000158426 #21	ENSGT00530000063725 #22	ENSGT00390000005448 #23	ENSGT00940000160223 #24	ENSGT00940000155342 #25	ENSGT00730000111199 #27	ENSGT01070000253744.b.a.b #29	ENSGT00390000017004.a.b #30	ENSGT00940000155276 #31	ENSGT00910000146657	ENSGT00390000014627 #32	ENSGT00390000004582 #33	ENSGT00940000158120 #34	ENSGT00940000154865 #35	ENSGT00940000154340.B #36	ENSGT00940000163077 #37	ENSGT00940000157973
American mink	MODERN SPECIES	11	APC16 (ENSNVIG00000010175)	ASCC1 (ENSNVIG00000010203) #7	SPOCK2 (ENSNVIG00000010272) #9	ENSNVIG00000010301	ENSNVIG00000010310	PSAP (ENSNVIG00000010316) #11	CDH23 (ENSNVIG00000010364) #12	GI24 (ENSNVIG00000010651)	C10orf105 (ENSNVIG00000010675) #14	SLC29A3 (ENSNVIG00000010685) #15	UNC5B (ENSNVIG00000010694) #16	PCBD1 (ENSNVIG00000010734) #18	SGPL1 (ENSNVIG00000010748) #19	TBATA (ENSNVIG00000010780) #20	ADAMTS14 (ENSNVIG00000010808) #21	PRF1 (ENSNVIG00000010850) #22	PALD1 (ENSNVIG00000010863) #23	NODAL (ENSNVIG00000010928) #24	EIF4EBP2 (ENSNVIG00000010939) #25	LRRC20 (ENSNVIG00000010945) #27	NPFFR1 (ENSNVIG00000010976) #29	PPA1 (ENSNVIG00000010989) #30	SAR1A (ENSNVIG00000010997) #31	ENSNVIG00000011013	TYSND1 (ENSNVIG00000011017) #32	AIFM2 (ENSNVIG00000011030) #33	MACROH2A2 (ENSNVIG00000011058) #34	COL13A1 (ENSNVIG00000011117) #35	CJ035 (ENSNVIG00000012014) #36	NEUROG3 (ENSNVIG00000012019) #37	TSPAN15 (ENSNVIG00000012025)
Ferret	MODERN SPECIES	310	ASCC1 (ENSMPUG00000004088) #7	SPOCK2 (ENSMPUG00000004098) #9	ENSMPUG00000004108	PSAP (ENSMPUG00000004112) #11	CDH23 (ENSMPUG00000004122) #12	VSIR (ENSMPUG00000004148)	SLC29A3 (ENSMPUG00000004153) #15	ENSMPUG00000004161	UNC5B (ENSMPUG00000004167) #16	ENSMPUG00000004185	PCBD1 (ENSMPUG00000004192) #18	SGPL1 (ENSMPUG00000004200) #19	ENSMPUG00000004207	TBATA (ENSMPUG00000004211) #20	ADAMTS14 (ENSMPUG00000004274) #21	PRF1 (ENSMPUG00000004284) #22	PALD1 (ENSMPUG00000004286) #23	NODAL (ENSMPUG00000004293) #24	EIF4EBP2 (ENSMPUG00000004300) #25	LRRC20 (ENSMPUG00000004310) #27	ENSMPUG00000004315	NPFFR1 (ENSMPUG00000004321) #29	PPA1 (ENSMPUG00000004327) #30	SAR1A (ENSMPUG00000004338) #31	TYSND1 (ENSMPUG00000004346) #32	AIFM2 (ENSMPUG00000004351) #33	MACROH2A2 (ENSMPUG00000004359) #34	COL13A1 (ENSMPUG00000004367) #35	FAM241B (ENSMPUG00000004392) #36	NEUROG3 (ENSMPUG00000019699) #37	TSPAN15 (ENSMPUG00000004403)
Canidae	ANCESTRAL SPECIES	7	ENSGT00390000018119 #7	ENSGT00940000157107 #9	ENSGT00910000147834	ENSGT00940000161045 #10	ENSGT00940000156695.f #11	ENSGT00940000163256	ENSGT00490000043902 #14	ENSGT00940000155245 #12	ENSGT00950000182898.a.a.b #15	ENSGT00950000182815.a.a.a.b #16	ENSGT00390000007221.a.b #18	ENSGT00390000000046 #19	ENSGT00510000048896 #20	ENSGT00940000158426 #21	ENSGT00940000154451.k.a	ENSGT00530000063725 #22	ENSGT00390000005448 #23	ENSGT00940000160223 #24	ENSGT00940000155342 #25	ENSGT00730000111199 #27	ENSGT01070000253744.b.a.b #29	ENSGT00390000017004.a.b #30	ENSGT00940000155276 #31	ENSGT00390000014627 #32	ENSGT00390000004582 #33	ENSGT00940000158120 #34	ENSGT00940000154865 #35	ENSGT00940000154340.B #36	ENSGT00940000163077 #37	ENSGT00940000157973	ENSGT00940000155512
Canis_lupus	ANCESTRAL SPECIES	12	ENSGT00390000018109	ENSGT00390000018119 #7	ENSGT00940000157107 #9	ENSGT00910000147834	ENSGT00940000161045 #10	ENSGT00940000156695.f #11	ENSGT00940000163256	ENSGT00490000043902 #14	ENSGT00940000155245 #12	ENSGT00950000182898.a.a.b #15	ENSGT00950000182815.a.a.a.b #16	ENSGT00390000007221.a.b #18	ENSGT00390000000046 #19	ENSGT00510000048896 #20	ENSGT00940000158426 #21	ENSGT00530000063725 #22	ENSGT00390000005448 #23	ENSGT00940000160223 #24	ENSGT00940000155342 #25	ENSGT00730000111199 #27	ENSGT01070000253744.b.a.b #29	ENSGT00390000017004.a.b.v #30	ENSGT00940000155276 #31	ENSGT00390000014627 #32	ENSGT00390000004582 #33	ENSGT00940000158120 #34	ENSGT00940000154865 #35	ENSGT00940000154340.B #36	ENSGT00940000163077 #37	ENSGT00940000157973	ENSGT00940000155512
Dog	MODERN SPECIES	32	ANAPC16 (ENSCAFG00845005587)	ASCC1 (ENSCAFG00845004672) #7	SPOCK2 (ENSCAFG00845004641) #9	CHST3 (ENSCAFG00845004621) #10	PSAP (ENSCAFG00845004604) #11	VSIR (ENSCAFG00845004580)	C10orf105 (ENSCAFG00845004573) #14	CDH23 (ENSCAFG00845004526) #12	SLC29A3 (ENSCAFG00845004482) #15	UNC5B (ENSCAFG00845004449) #16	PCBD1 (ENSCAFG00845004424) #18	SGPL1 (ENSCAFG00845004410) #19	ENSCAFG00845004395 #20	ADAMTS14 (ENSCAFG00845004365) #21	ENSCAFG00845004351	PRF1 (ENSCAFG00845004341) #22	PALD1 (ENSCAFG00845004298) #23	NODAL (ENSCAFG00845004277) #24	EIF4EBP2 (ENSCAFG00845004263) #25	LRRC20 (ENSCAFG00845004236) #27	NPFFR1 (ENSCAFG00845004215) #29	ENSCAFG00845004189 #30	SAR1A (ENSCAFG00845004124) #31	TYSND1 (ENSCAFG00845004061) #32	ENSCAFG00845003998 #33	MACROH2A2 (ENSCAFG00845003908) #34	COL13A1 (ENSCAFG00845003810) #35	FAM241B (ENSCAFG00845003706) #36	NEUROG3 (ENSCAFG00845003696) #37	TSPAN15 (ENSCAFG00845003657)	TACR2 (ENSCAFG00845003627)
Dingo	MODERN SPECIES	324	ASCC1 (ENSCAFG00020025090) #7	SPOCK2 (ENSCAFG00020025092) #9	ENSCAFG00020025104	CHST3 (ENSCAFG00020025106) #10	ENSCAFG00020025109	PSAP (ENSCAFG00020025113) #11	CDH23 (ENSCAFG00020025203) #12	VSIR (ENSCAFG00020025457)	ENSCAFG00020025459 #14	SLC29A3 (ENSCAFG00020025460) #15	UNC5B (ENSCAFG00020025469) #16	PCBD1 (ENSCAFG00020025682) #18	SGPL1 (ENSCAFG00020025695) #19	TBATA (ENSCAFG00020025801) #20	ADAMTS14 (ENSCAFG00020025818) #21	PRF1 (ENSCAFG00020025860) #22	PALD1 (ENSCAFG00020025865) #23	NODAL (ENSCAFG00020025872) #24	EIF4EBP2 (ENSCAFG00020025874) #25	LRRC20 (ENSCAFG00020025878) #27	NPFFR1 (ENSCAFG00020025884) #29	ENSCAFG00020025888 #30	SAR1A (ENSCAFG00020025897) #31	TYSND1 (ENSCAFG00020025903) #32	AIFM2 (ENSCAFG00020025909) #33	MACROH2A2 (ENSCAFG00020025914) #34	ENSCAFG00020025917 #35	FAM241B (ENSCAFG00020025925) #36	NEUROG3 (ENSCAFG00020025927) #37	TSPAN15 (ENSCAFG00020025929)	TACR2 (ENSCAFG00020025934)
Red fox	MODERN SPECIES	2	ASCC1 (ENSVVUG00000022616) #7	SPOCK2 (ENSVVUG00000022605) #9	CHST3 (ENSVVUG00000022603) #10	ENSVVUG00000022602	PSAP (ENSVVUG00000022592) #11	VSIR (ENSVVUG00000022585)	C10orf105 (ENSVVUG00000022581) #14	CDH23 (ENSVVUG00000021729) #12	SLC29A3 (ENSVVUG00000021668) #15	UNC5B (ENSVVUG00000021663) #16	PCBD1 (ENSVVUG00000021661) #18	SGPL1 (ENSVVUG00000021656) #19	ENSVVUG00000021648 #20	ADAMTS14 (ENSVVUG00000021638) #21	ENSVVUG00000021634	PRF1 (ENSVVUG00000021630) #22	PALD1 (ENSVVUG00000021621) #23	NODAL (ENSVVUG00000021617) #24	EIF4EBP2 (ENSVVUG00000021616) #25	LRRC20 (ENSVVUG00000021615) #27	ENSVVUG00000021614 #29	PPA1 (ENSVVUG00000021611) #30	SAR1A (ENSVVUG00000021609) #31	ENSVVUG00000021608 #32	AIFM2 (ENSVVUG00000021607) #33	MACROH2A2 (ENSVVUG00000021605) #34	FAM241B (ENSVVUG00000021593) #36	NEUROG3 (ENSVVUG00000021592) #37	TSPAN15 (ENSVVUG00000021590)	TACR2 (ENSVVUG00000021585)	HK1 (ENSVVUG00000021583)
Felidae	ANCESTRAL SPECIES	14	ENSGT00390000018109	ENSGT00390000018119 #7	ENSGT00940000157107 #9	ENSGT00910000147834	ENSGT00940000161045 #10	ENSGT00940000156695.f #11	ENSGT00940000163256	ENSGT00490000043902 #14	ENSGT00940000155245 #12	ENSGT00950000182898.a.a.b #15	ENSGT00950000182815.a.a.a.b #16	ENSGT00390000007221.a.b.g #18	ENSGT00390000000046 #19	ENSGT00510000048896 #20	ENSGT00940000158426 #21	ENSGT00530000063725 #22	ENSGT00390000005448 #23	ENSGT00940000160223 #24	ENSGT00940000155342 #25	ENSGT00730000111199 #27	ENSGT01070000253744.b.a.b #29	ENSGT00390000017004.a.b #30	ENSGT00940000155276 #31	ENSGT00390000014627 #32	ENSGT00390000004582 #33	ENSGT00940000158120 #34	ENSGT00940000154865 #35	ENSGT00940000154340.B #36	ENSGT00940000163077 #37	ENSGT00940000157973	ENSGT00940000155512
Panthera	ANCESTRAL SPECIES	8	ENSGT00390000018109	ENSGT00390000018119 #7	ENSGT00940000157107 #9	ENSGT00910000147834	ENSGT00940000161045 #10	ENSGT00940000156695.f #11	ENSGT00940000155245 #12	ENSGT00940000163256	ENSGT00490000043902 #14	ENSGT00950000182898.a.a.b #15	ENSGT00950000182815.a.a.a.b #16	ENSGT00390000007221.a.b.g #18	ENSGT00390000000046 #19	ENSGT00510000048896 #20	ENSGT00940000158426 #21	ENSGT00530000063725 #22	ENSGT00390000005448 #23	ENSGT00940000160223 #24	ENSGT00940000155342 #25	ENSGT00730000111199 #27	ENSGT01070000253744.b.a.b #29	ENSGT00390000017004.a.b #30	ENSGT00940000155276 #31	ENSGT00390000014627 #32	ENSGT00390000004582 #33	ENSGT00940000158120 #34	ENSGT00940000154865 #35	ENSGT00940000154340.B #36	ENSGT00940000163077 #37	ENSGT00940000157973	ENSGT00940000155512
Panthera_a	ANCESTRAL SPECIES	9	ENSGT00390000018109	ENSGT00390000018119 #7	ENSGT00940000157107 #9	ENSGT00910000147834	ENSGT00940000161045 #10	ENSGT00940000156695.f #11	ENSGT00940000155245 #12	ENSGT00940000163256	ENSGT00490000043902 #14	ENSGT00950000182898.a.a.b #15	ENSGT00950000182815.a.a.a.b #16	ENSGT00390000007221.a.b.g #18	ENSGT00390000000046 #19	ENSGT00510000048896 #20	ENSGT00940000158426 #21	ENSGT00530000063725 #22	ENSGT00390000005448 #23	ENSGT00940000160223 #24	ENSGT00940000155342 #25	ENSGT00730000111199 #27	ENSGT01070000253744.b.a.b #29	ENSGT00390000017004.a.b #30	ENSGT00940000155276 #31	ENSGT00390000014627 #32	ENSGT00390000004582 #33	ENSGT00940000158120 #34	ENSGT00940000154865 #35	ENSGT00940000154340.B #36	ENSGT00940000163077 #37	ENSGT00940000157973	ENSGT00940000155512
leopard	MODERN SPECIES	11	ANAPC16 (ENSPPRG00000010082)	ASCC1 (ENSPPRG00000010572) #7	SPOCK2 (ENSPPRG00000011863) #9	CHST3 (ENSPPRG00000013415) #10	ENSPPRG00000016116 #11	ENSPPRG00000000500 #12	VSIR (ENSPPRG00000000872)	C10orf105 (ENSPPRG00000016350) #14	ENSPPRG00000006503 #12	SLC29A3 (ENSPPRG00000007421) #15	UNC5B (ENSPPRG00000008828) #16	PCBD1 (ENSPPRG00000008995) #18	SGPL1 (ENSPPRG00000009623) #19	TBATA (ENSPPRG00000010303) #20	ADAMTS14 (ENSPPRG00000012238) #21	PRF1 (ENSPPRG00000012550) #22	PALD1 (ENSPPRG00000013899) #23	NODAL (ENSPPRG00000014162) #24	EIF4EBP2 (ENSPPRG00000018412) #25	LRRC20 (ENSPPRG00000021202) #27	NPFFR1 (ENSPPRG00000024413) #29	PPA1 (ENSPPRG00000024279) #30	ENSPPRG00000024192	ENSPPRG00000023919 #31	TYSND1 (ENSPPRG00000023547) #32	ENSPPRG00000023345 #33	ENSPPRG00000022824 #33	MACROH2A2 (ENSPPRG00000000078) #34	COL13A1 (ENSPPRG00000023812) #35	FAM241B (ENSPPRG00000022953) #36	NEUROG3 (ENSPPRG00000017578) #37
lion	MODERN SPECIES	11	ANAPC16 (ENSPLOG00000020247)	ASCC1 (ENSPLOG00000020267) #7	SPOCK2 (ENSPLOG00000020310) #9	ENSPLOG00000020375	CHST3 (ENSPLOG00000020387) #10	PSAP (ENSPLOG00000020483) #11	CDH23 (ENSPLOG00000020833) #12	VSIR (ENSPLOG00000021791)	C10orf105 (ENSPLOG00000021821) #14	SLC29A3 (ENSPLOG00000021830) #15	UNC5B (ENSPLOG00000021875) #16	ENSPLOG00000021936 #18	SGPL1 (ENSPLOG00000021950) #19	TBATA (ENSPLOG00000011068) #20	ADAMTS14 (ENSPLOG00000011148) #21	PRF1 (ENSPLOG00000011480) #22	PALD1 (ENSPLOG00000011522) #23	NODAL (ENSPLOG00000011665) #24	EIF4EBP2 (ENSPLOG00000011707) #25	LRRC20 (ENSPLOG00000011760) #27	NPFFR1 (ENSPLOG00000011854) #29	PPA1 (ENSPLOG00000011917) #30	SAR1A (ENSPLOG00000011980) #31	TYSND1 (ENSPLOG00000012029) #32	AIFM2 (ENSPLOG00000012065) #33	MACROH2A2 (ENSPLOG00000012212) #34	COL13A1 (ENSPLOG00000012846) #35	FAM241B (ENSPLOG00000016503) #36	NEUROG3 (ENSPLOG00000016530) #37	TSPAN15 (ENSPLOG00000016551)	TACR2 (ENSPLOG00000016621)
Tiger	MODERN SPECIES	507	DDIT4 (ENSPTIG00000015125)	ANAPC16 (ENSPTIG00000015448)	ASCC1 (ENSPTIG00000015725) #7	SPOCK2 (ENSPTIG00000016016) #9	PSAP (ENSPTIG00000017371) #11	ENSPTIG00000018177 #12	ENSPTIG00000020338 #13	C10orf105 (ENSPTIG00000005727) #14	ENSPTIG00000020792 #12	SLC29A3 (ENSPTIG00000008968) #15	UNC5B (ENSPTIG00000009579) #16	PCBD1 (ENSPTIG00000010960) #18	SGPL1 (ENSPTIG00000011047) #19	TBATA (ENSPTIG00000011499) #20	ADAMTS14 (ENSPTIG00000011892) #21	PRF1 (ENSPTIG00000012939) #22	PALD1 (ENSPTIG00000013878) #23	NODAL (ENSPTIG00000014186) #24	EIF4EBP2 (ENSPTIG00000014411) #25	LRRC20 (ENSPTIG00000014791) #27	NPFFR1 (ENSPTIG00000015327) #29	PPA1 (ENSPTIG00000015554) #30	SAR1A (ENSPTIG00000015795) #31	AIFM2 (ENSPTIG00000016075) #33	MACROH2A2 (ENSPTIG00000016189) #34	ENSPTIG00000016717	FAM241B (ENSPTIG00000018790) #36	TSPAN15 (ENSPTIG00000019089)	TACR2 (ENSPTIG00000019294)	HK1 (ENSPTIG00000019734)	HKDC1 (ENSPTIG00000003776)
Cat	MODERN SPECIES	242	DDIT4 (ENSFCAG00000029132)	ANAPC16 (ENSFCAG00000010368)	SPOCK2 (ENSFCAG00000013054) #9	ASCC1 (ENSFCAG00000026720) #7	CHST3 (ENSFCAG00000013053) #10	PSAP (ENSFCAG00000013052) #11	VSIR (ENSFCAG00000013051)	CD2H10orf105 (ENSFCAG00000042774) #14	CDH23 (ENSFCAG00000025497) #12	SLC29A3 (ENSFCAG00000013048) #15	UNC5B (ENSFCAG00000013047) #16	PCBD1 (ENSFCAG00000001235) #18	SGPL1 (ENSFCAG00000001234) #19	TBATA (ENSFCAG00000001233) #20	ADAMTS14 (ENSFCAG00000001232) #21	PRF1 (ENSFCAG00000028455) #22	PALD1 (ENSFCAG00000001231) #23	NODAL (ENSFCAG00000001230) #24	EIF4EBP2 (ENSFCAG00000036699) #25	LRRC20 (ENSFCAG00000001228) #29	PPA1 (ENSFCAG00000028251) #30	SAR1A (ENSFCAG00000043085) #31	TYSND1 (ENSFCAG00000044166) #32	AIFM2 (ENSFCAG00000001226) #33	MACROH2A2 (ENSFCAG00000001225) #34	COL13A1 (ENSFCAG00000041886) #35	FAM241B (ENSFCAG00000025651) #36	NEUROG3 (ENSFCAG00000022498) #37	TSPAN15 (ENSFCAG00000004929)	TACR2 (ENSFCAG00000004928)	HK1 (ENSFCAG00000004927)
Laurasiatheria_c	ANCESTRAL SPECIES	15	ENSGT00390000018109	ENSGT00390000018119 #7	ENSGT00940000157107 #9	ENSGT00940000161045 #10	ENSGT00940000156695.f #11	ENSGT00940000163256	ENSGT00940000155245 #12	ENSGT00940000163216 #13	ENSGT00490000043902 #14	ENSGT00950000182898.a.a.b #15	ENSGT00950000182815.a.a.a.b #16	ENSGT00390000007221.a.b #18	ENSGT00390000000046 #19	ENSGT00510000048896 #20	ENSGT00940000158426 #21	ENSGT00530000063725 #22	ENSGT00390000005448 #23	ENSGT00940000160223 #24	ENSGT00940000155342 #25	ENSGT00730000111199 #27	ENSGT01070000253744.b.a.b #29	ENSGT00390000017004.a.b #30	ENSGT00940000155276 #31	ENSGT00390000014627 #32	ENSGT00390000004582 #33	ENSGT00940000158120 #34	ENSGT00940000154865 #35	ENSGT00940000154340.B #36	ENSGT00940000163077 #37	ENSGT00940000157973	ENSGT00940000155512
Equus	ANCESTRAL SPECIES	9	ENSGT00390000018109	ENSGT00390000018119 #7	ENSGT00940000157107 #9	ENSGT00940000161045 #10	ENSGT00940000156695.f #11	ENSGT00940000163256	ENSGT00490000043902 #14	ENSGT00940000155245 #12	ENSGT00950000182898.a.a.b #15	ENSGT00950000182815.a.a.a.b #16	ENSGT00940000153524.b.a.a	ENSGT00390000007221.a.b #18	ENSGT00390000000046 #19	ENSGT00510000048896 #20	ENSGT00940000158426 #21	ENSGT00530000063725 #22	ENSGT00390000005448 #23	ENSGT00940000160223 #24	ENSGT00940000155342 #25	ENSGT00730000111199 #27	ENSGT01070000253744.b.a.b #29	ENSGT00390000017004.a.b #30	ENSGT00940000155276 #31	ENSGT00390000014627 #32	ENSGT00390000004582 #33	ENSGT00940000158120 #34	ENSGT00940000154865 #35	ENSGT00940000154340.B #36	ENSGT00940000163077 #37	ENSGT00940000157973	ENSGT00940000155512
Donkey	MODERN SPECIES	11	ASCC1 (ENSEASG00005016551) #7	SPOCK2 (ENSEASG00005016537) #9	CHST3 (ENSEASG00005016530) #10	PSAP (ENSEASG00005016524) #11	VSIR (ENSEASG00005016520)	ENSEASG00005016157 #12	C10orf105 (ENSEASG00005016518) #14	ENSEASG00005027011 #12	SLC29A3 (ENSEASG00005016096) #15	UNC5B (ENSEASG00005016091) #16	ENSEASG00005026727	ENSEASG00005027076 #18	SGPL1 (ENSEASG00005016079) #19	TBATA (ENSEASG00005016071) #20	ADAMTS14 (ENSEASG00005016065) #21	PRF1 (ENSEASG00005016063) #22	PALD1 (ENSEASG00005016057) #23	NODAL (ENSEASG00005016055) #24	EIF4EBP2 (ENSEASG00005016053) #25	LRRC20 (ENSEASG00005016051) #27	NPFFR1 (ENSEASG00005016050) #29	PPA1 (ENSEASG00005016049) #30	SAR1A (ENSEASG00005028734) #31	TYSND1 (ENSEASG00005016043) #32	AIFM2 (ENSEASG00005016041) #33	MACROH2A2 (ENSEASG00005016040) #34	COL13A1 (ENSEASG00005028356) #35	NEUROG3 (ENSEASG00005016033) #37	FAM241B (ENSEASG00005016035) #36	TSPAN15 (ENSEASG00005016032)	TACR2 (ENSEASG00005016028)
Horse	MODERN SPECIES		ASCC1 (ENSECAG00000017211) #7	ENSECAG00000056109 #9	SPOCK2 (ENSECAG00000009278) #9	CHST3 (ENSECAG00000008012) #10	PSAP (ENSECAG00000021672) #11	VSIR (ENSECAG00000018133)	C1H10orf105 (ENSECAG00000031137) #14	CDH23 (ENSECAG00000023411) #12	SLC29A3 (ENSECAG00000020891) #15	UNC5B (ENSECAG00000009792) #16	ENSECAG00000038298	PCBD1 (ENSECAG00000009682) #18	SGPL1 (ENSECAG00000016826) #19	TBATA (ENSECAG00000014630) #20	ADAMTS14 (ENSECAG00000014713) #21	PRF1 (ENSECAG00000012441) #22	PALD1 (ENSECAG00000019695) #23	NODAL (ENSECAG00000017055) #24	EIF4EBP2 (ENSECAG00000034245) #25	LRRC20 (ENSECAG00000015466) #27	NPFFR1 (ENSECAG00000010498) #29	PPA1 (ENSECAG00000018686) #30	ENSECAG00000051984	ENSECAG00000047322	ENSECAG00000059469	SAR1A (ENSECAG00000009730) #31	TYSND1 (ENSECAG00000009202) #32	AIFM2 (ENSECAG00000004338) #33	MACROH2A2 (ENSECAG00000019223) #34	COL13A1 (ENSECAG00000018359) #35	FAM241B (ENSECAG00000018112) #36
Chiroptera	ANCESTRAL SPECIES	6	ENSGT00390000018109	ENSGT00390000018119 #7	ENSGT00940000157107 #9	ENSGT00940000161045 #10	ENSGT00940000156695.f #11	ENSGT00940000163216 #13	ENSGT00940000163256	ENSGT00490000043902 #14	ENSGT00940000155245 #12	ENSGT00950000182898.a.a.b #15	ENSGT00950000182815.a.a.a.b #16	ENSGT00390000007221.a.b #18	ENSGT00390000000046 #19	ENSGT00510000048896 #20	ENSGT00940000158426 #21	ENSGT00530000063725 #22	ENSGT00390000005448 #23	ENSGT00940000160223 #24	ENSGT00940000155342 #25	ENSGT00730000111199 #27	ENSGT01070000253744.b.a.b #29	ENSGT00390000017004.a.b #30	ENSGT00940000155276 #31	ENSGT00390000014627 #32	ENSGT00390000004582 #33	ENSGT00940000158120 #34	ENSGT00940000154865 #35	ENSGT00940000154340.B #36	ENSGT00940000163077 #37	ENSGT00940000157973	ENSGT00940000155512
Microchiroptera	ANCESTRAL SPECIES	5	ENSGT00530000063652.b	ENSGT00390000018109	ENSGT00390000018119 #7	ENSGT00940000157107 #9	ENSGT00940000161045 #10	ENSGT00940000156695.f #11	ENSGT00940000155245 #12	ENSGT00940000163256	ENSGT00490000043902 #14	ENSGT00950000182898.a.a.b #15	ENSGT00950000182815.a.a.a.b #16	ENSGT00390000007221.a.b #18	ENSGT00390000000046 #19	ENSGT00510000048896 #20	ENSGT00940000158426 #21	ENSGT00530000063725 #22	ENSGT00390000005448 #23	ENSGT00940000160223 #24	ENSGT00940000155342 #25	ENSGT00730000111199 #27	ENSGT01070000253744.b.a.b #29	ENSGT00390000017004.a.b #30	ENSGT00940000155276 #31	ENSGT00390000014627 #32	ENSGT00390000004582 #33	ENSGT00940000158120 #34	ENSGT00940000154865 #35	ENSGT00940000154340.B #36	ENSGT00940000163077 #37	ENSGT00940000157973	ENSGT00940000155512
Microbat	MODERN SPECIES	1229											UNC5B (ENSMLUG00000012885) #16	PCBD1 (ENSMLUG00000016074) #18	SGPL1 (ENSMLUG00000016063) #19	TBATA (ENSMLUG00000016058) #20	ADAMTS14 (ENSMLUG00000010277) #21	PRF1 (ENSMLUG00000008949) #22	PALD1 (ENSMLUG00000002728) #23	NODAL (ENSMLUG00000015297) #24	EIF4EBP2 (ENSMLUG00000015295) #25	ENSMLUG00000015290 #27	ENSMLUG00000002922	PPA1 (ENSMLUG00000017790) #30	SAR1A (ENSMLUG00000006626) #31	TYSND1 (ENSMLUG00000024592) #32	AIFM2 (ENSMLUG00000006612) #33	MACROH2A2 (ENSMLUG00000006600) #34	COL13A1 (ENSMLUG00000002593) #35	NEUROG3 (ENSMLUG00000024120) #37	TSPAN15 (ENSMLUG00000016251)	TACR2 (ENSMLUG00000012713)	HK1 (ENSMLUG00000012697)
Greater horseshoe bat	MODERN SPECIES	7	DDIT4 (ENSRFEG00010015015)	ANAPC16 (ENSRFEG00010014951)	ASCC1 (ENSRFEG00010014909) #7	SPOCK2 (ENSRFEG00010014536) #9	ENSRFEG00010014490	PSAP (ENSRFEG00010014404) #11	VSIR (ENSRFEG00010014343)	C10orf105 (ENSRFEG00010014321) #14	CDH23 (ENSRFEG00010011936) #12	SLC29A3 (ENSRFEG00010011784) #15	UNC5B (ENSRFEG00010011696) #16	ENSRFEG00010011644 #18	SGPL1 (ENSRFEG00010011573) #19	TBATA (ENSRFEG00010011396) #20	ADAMTS14 (ENSRFEG00010010774) #21	PRF1 (ENSRFEG00010010708) #22	PALD1 (ENSRFEG00010010635) #23	NODAL (ENSRFEG00010010575) #24	EIF4EBP2 (ENSRFEG00010010536) #25	NPFFR1 (ENSRFEG00010010307) #29	ENSRFEG00010010193	PPA1 (ENSRFEG00010010149) #30	SAR1A (ENSRFEG00010010102) #31	TYSND1 (ENSRFEG00010010070) #32	AIFM2 (ENSRFEG00010010027) #33	MACROH2A2 (ENSRFEG00010010000) #34	COL13A1 (ENSRFEG00010009761) #35	FAM241B (ENSRFEG00010009658) #36	NEUROG3 (ENSRFEG00010009646) #37	TSPAN15 (ENSRFEG00010009559)	TACR2 (ENSRFEG00010009489)
Megabat	MODERN SPECIES	2603															ADAMTS14 (ENSPVAG00000015343) #21	PRF1 (ENSPVAG00000015341) #22
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00530000063725 #22
Hedgehog	DUPLICATION
Hedgehog	MODERN SPECIES	10287																ENSEEUG00000002754 #22
Hedgehog	MODERN SPECIES	9908																ENSEEUG00000005244 #22
Atlantogenata	ANCESTRAL SPECIES	10	ENSGT01100000263502.B.a.a	ENSGT00390000015768	ENSGT00940000155910	ENSGT00940000153912.A	ENSGT01090000260051.b.a.a.b.b	ENSGT00940000156033	ENSGT00940000159143	ENSGT00940000155509	ENSGT01050000244940.a.b	ENSGT00950000182898.a.a.b #15	ENSGT00950000182815.a.a.a.b #16	ENSGT00390000007221.a.b #18	ENSGT00390000000046 #19	ENSGT00510000048896 #20	ENSGT00940000158426 #21	ENSGT00530000063725 #22	ENSGT00390000005448 #23	ENSGT00940000160223 #24	ENSGT00940000155342 #25	ENSGT00730000111199 #27	ENSGT01070000253744.b.a.b #29	ENSGT00390000017004.a.b #30	ENSGT00940000155276 #31	ENSGT00390000014627 #32	ENSGT00390000004582 #33	ENSGT00940000158120 #34	ENSGT00940000154865 #35	ENSGT00940000154340.B #36	ENSGT00940000163077 #37	ENSGT00940000157973	ENSGT00940000155512
Xenarthra	ANCESTRAL SPECIES	6	ENSGT00390000018109	ENSGT00390000018119 #7	ENSGT00940000157107 #9	ENSGT00940000161045 #10	ENSGT00940000156695.f #11	ENSGT00940000155245 #12	ENSGT00940000163256	ENSGT00490000043902 #14	ENSGT00940000155509	ENSGT00950000182898.a.a.b #15	ENSGT00950000182815.a.a.a.b #16	ENSGT00390000007221.a.b #18	ENSGT00390000000046 #19	ENSGT00510000048896 #20	ENSGT00940000158426 #21	ENSGT00530000063725 #22	ENSGT00390000005448 #23	ENSGT00940000160223 #24	ENSGT00940000155342 #25	ENSGT00730000111199 #27	ENSGT01070000253744.b.a.b #29	ENSGT00390000017004.a.b #30	ENSGT00940000155276 #31	ENSGT00390000014627 #32	ENSGT00390000004582 #33	ENSGT00940000158120 #34	ENSGT00940000154865 #35	ENSGT00940000154340.B #36	ENSGT00940000157973	ENSGT00940000155512	ENSGT00950000182787.A
Armadillo	DUPLICATION
Armadillo	MODERN SPECIES	2761	SPOCK2 (ENSDNOG00000041677) #9	CHST3 (ENSDNOG00000013465) #10	PSAP (ENSDNOG00000018459) #11	ENSDNOG00000032599 #12	VSIR (ENSDNOG00000015130)	C10orf105 (ENSDNOG00000037764) #14	ENSDNOG00000038458	SLC29A3 (ENSDNOG00000030931) #15	UNC5B (ENSDNOG00000046472) #16	PCBD1 (ENSDNOG00000037939) #18	SGPL1 (ENSDNOG00000040289) #19	TBATA (ENSDNOG00000031360) #20	ADAMTS14 (ENSDNOG00000019155) #21	ENSDNOG00000003703 #22	ENSDNOG00000042000	ENSDNOG00000034303 #22	PALD1 (ENSDNOG00000044335) #23	NODAL (ENSDNOG00000017851) #24	EIF4EBP2 (ENSDNOG00000010090) #25	LRRC20 (ENSDNOG00000041213) #27	NPFFR1 (ENSDNOG00000014877) #29	PPA1 (ENSDNOG00000047169) #30	ENSDNOG00000035765 #31	TYSND1 (ENSDNOG00000047164) #32	AIFM2 (ENSDNOG00000011059) #33	MACROH2A2 (ENSDNOG00000011036) #34	COL13A1 (ENSDNOG00000013984) #35	FAM241B (ENSDNOG00000014713) #36	ENSDNOG00000040959	TSPAN15 (ENSDNOG00000011926)	TACR2 (ENSDNOG00000014359)
Armadillo	MODERN SPECIES	2761	ENSDNOG00000006513	ASCC1 (ENSDNOG00000006561) #7	SPOCK2 (ENSDNOG00000041677) #9	CHST3 (ENSDNOG00000013465) #10	PSAP (ENSDNOG00000018459) #11	ENSDNOG00000032599 #12	VSIR (ENSDNOG00000015130)	C10orf105 (ENSDNOG00000037764) #14	ENSDNOG00000038458	SLC29A3 (ENSDNOG00000030931) #15	UNC5B (ENSDNOG00000046472) #16	PCBD1 (ENSDNOG00000037939) #18	SGPL1 (ENSDNOG00000040289) #19	TBATA (ENSDNOG00000031360) #20	ADAMTS14 (ENSDNOG00000019155) #21	ENSDNOG00000003703 #22	ENSDNOG00000042000	ENSDNOG00000034303 #22	PALD1 (ENSDNOG00000044335) #23	NODAL (ENSDNOG00000017851) #24	EIF4EBP2 (ENSDNOG00000010090) #25	LRRC20 (ENSDNOG00000041213) #27	NPFFR1 (ENSDNOG00000014877) #29	PPA1 (ENSDNOG00000047169) #30	ENSDNOG00000035765 #31	TYSND1 (ENSDNOG00000047164) #32	AIFM2 (ENSDNOG00000011059) #33	MACROH2A2 (ENSDNOG00000011036) #34	COL13A1 (ENSDNOG00000013984) #35	FAM241B (ENSDNOG00000014713) #36	ENSDNOG00000040959
Sloth	MODERN SPECIES	9932																ENSCHOG00000003342 #22
Afrotheria	ANCESTRAL SPECIES	4	ENSGT00390000018109	ENSGT00390000018119 #7	ENSGT00940000157107 #9	ENSGT00940000161045 #10	ENSGT00940000156695.f #11	ENSGT00940000163256	ENSGT00490000043902 #14	ENSGT00940000163216 #13	ENSGT00940000155245 #12	ENSGT00950000182898.a.a.b #15	ENSGT00950000182815.a.a.a.b #16	ENSGT00390000007221.a.b #18	ENSGT00390000000046 #19	ENSGT00510000048896 #20	ENSGT00940000158426 #21	ENSGT00530000063725 #22	ENSGT00390000005448 #23	ENSGT00940000160223 #24	ENSGT00940000155342 #25	ENSGT00730000111199 #27	ENSGT01070000253744.b.a.b #29	ENSGT00390000017004.a.b #30	ENSGT00940000155276 #31	ENSGT00390000014627 #32	ENSGT00390000004582 #33	ENSGT00940000158120 #34	ENSGT00940000154865 #35	ENSGT00940000154340.B #36	ENSGT00940000163077 #37	ENSGT00940000157973	ENSGT00940000155512
Afrotheria_a	ANCESTRAL SPECIES	4	ENSGT00390000018109	ENSGT00390000018119 #7	ENSGT00940000157107 #9	ENSGT00940000161045 #10	ENSGT00940000156695.f #11	ENSGT00940000163256	ENSGT00490000043902 #14	ENSGT00940000163216 #13	ENSGT00940000155245 #12	ENSGT00950000182898.a.a.b #15	ENSGT00950000182815.a.a.a.b #16	ENSGT00390000007221.a.b #18	ENSGT00390000000046 #19	ENSGT00510000048896 #20	ENSGT00940000158426 #21	ENSGT00530000063725 #22	ENSGT00390000005448 #23	ENSGT00940000160223 #24	ENSGT00940000155342 #25	ENSGT00730000111199 #27	ENSGT01070000253744.b.a.b #29	ENSGT00390000017004.a.b #30	ENSGT00940000155276 #31	ENSGT00390000014627 #32	ENSGT00390000004582 #33	ENSGT00940000158120 #34	ENSGT00940000154865 #35	ENSGT00940000154340.B #36	ENSGT00940000163077 #37	ENSGT00940000157973	ENSGT00940000155512
Hyrax	DUPLICATION
Hyrax	MODERN SPECIES	9662																ENSPCAG00000005906 #22
Hyrax	MODERN SPECIES	10840																ENSPCAG00000007760 #22
Elephant	MODERN SPECIES	3	DNAJB12 (ENSLAFG00000015077)	DDIT4 (ENSLAFG00000031961)	ANAPC16 (ENSLAFG00000022069)	ASCC1 (ENSLAFG00000015184) #7	SPOCK2 (ENSLAFG00000015179) #9	CHST3 (ENSLAFG00000015175) #10	PSAP (ENSLAFG00000015200) #11	ENSLAFG00000015194 #13	CDH23 (ENSLAFG00000015162) #12	SLC29A3 (ENSLAFG00000000756) #15	UNC5B (ENSLAFG00000005324) #16	PCBD1 (ENSLAFG00000001397) #18	SGPL1 (ENSLAFG00000008044) #19	TBATA (ENSLAFG00000006019) #20	ADAMTS14 (ENSLAFG00000016772) #21	PRF1 (ENSLAFG00000011581) #22	ENSLAFG00000032012 #23	NODAL (ENSLAFG00000021867) #24	EIF4EBP2 (ENSLAFG00000006809) #25	LRRC20 (ENSLAFG00000004053) #27	NPFFR1 (ENSLAFG00000004049) #29	PPA1 (ENSLAFG00000004048) #30	SAR1A (ENSLAFG00000004046) #31	TYSND1 (ENSLAFG00000027644) #32	AIFM2 (ENSLAFG00000015633) #33	MACROH2A2 (ENSLAFG00000015625) #34	COL13A1 (ENSLAFG00000015605) #35	FAM241B (ENSLAFG00000030222) #36	NEUROG3 (ENSLAFG00000028187) #37	TSPAN15 (ENSLAFG00000016822)	TACR2 (ENSLAFG00000017960)
Tenrec	MODERN SPECIES	7194																PRF1 (ENSETEG00000013192) #22
Marsupialia	ANCESTRAL SPECIES		ENSGT00940000155357	ENSGT00390000013049	ENSGT00390000014815	ENSGT00940000156738	ENSGT00390000013422	ENSGT00940000153731.a.b	ENSGT00390000011159	ENSGT01010000222360.A	ENSGT00940000156932	ENSGT00940000154954	ENSGT00940000157591	ENSGT00940000158464	ENSGT00940000154996.a.b	ENSGT00510000048896 #20	ENSGT00940000158426 #21	ENSGT00530000063725 #22	ENSGT00390000005448 #23	ENSGT00940000160223 #24	ENSGT00940000155342 #25	ENSGT00730000111199 #27	ENSGT01070000253744.b.a.b #29	ENSGT00390000017004.a.b #30	ENSGT00940000155276 #31	ENSGT00390000014627 #32	ENSGT00390000004582 #33	ENSGT00940000158120 #34	ENSGT00940000154865 #35	ENSGT00940000154340.B #36	ENSGT00940000163077 #37	ENSGT00940000157973	ENSGT00940000155512
Marsupialia_b	ANCESTRAL SPECIES		ENSGT00940000155357	ENSGT00390000013049	ENSGT00390000014815	ENSGT00940000156738	ENSGT00390000013422	ENSGT00940000153731.a.b	ENSGT00390000011159	ENSGT01010000222360.A	ENSGT00940000156932	ENSGT00940000154954	ENSGT00940000157591	ENSGT00940000158464	ENSGT00940000154996.a.b	ENSGT00510000048896 #20	ENSGT00940000158426 #21	ENSGT00530000063725 #22	ENSGT00390000005448 #23	ENSGT00940000160223 #24	ENSGT00940000155342 #25	ENSGT00730000111199 #27	ENSGT01070000253744.b.a.b #29	ENSGT00390000017004.a.b #30	ENSGT00940000155276.`b.b #31	ENSGT00390000014627 #32	ENSGT00390000004582 #33	ENSGT00940000158120 #34	ENSGT00940000154865 #35	ENSGT00940000154340.B #36	ENSGT00940000163077 #37	ENSGT00940000157973	ENSGT00940000155512
Diprotodontia	ANCESTRAL SPECIES	48	ENSGT00940000155357	ENSGT00390000013049	ENSGT00390000014815	ENSGT00940000156738	ENSGT00390000013422	ENSGT00940000153731.a.b	ENSGT00390000011159	ENSGT01010000222360.A	ENSGT00940000156932	ENSGT00940000154954	ENSGT00940000157591	ENSGT00940000158464	ENSGT00940000154996.a.b	ENSGT00940000174594	ENSGT00940000158426 #21	ENSGT00530000063725 #22	ENSGT00390000005448 #23	ENSGT00940000160223 #24	ENSGT00940000155342 #25	ENSGT00730000111199 #27	ENSGT01070000253744.b.a.b #29	ENSGT00390000017004.a.b #30	ENSGT00940000155276.`b.b #31	ENSGT00390000014627 #32	ENSGT00390000004582 #33	ENSGT00940000158120 #34	ENSGT00940000154865 #35	ENSGT00940000154340.B #36	ENSGT00940000163077 #37	ENSGT00940000157973	ENSGT00940000155512
Diprotodontia_a	ANCESTRAL SPECIES	42	ENSGT00940000155357	ENSGT00390000013049	ENSGT00390000014815	ENSGT00940000156738	ENSGT00390000013422	ENSGT00940000153731.a.b	ENSGT00390000011159	ENSGT01010000222360.A	ENSGT00940000156932	ENSGT00940000154954	ENSGT00940000157591	ENSGT00940000158464	ENSGT00940000154996.a.b	ENSGT00940000174594	ENSGT00940000158426 #21	ENSGT00530000063725 #22	ENSGT00390000005448 #23	ENSGT00940000160223 #24	ENSGT00940000155342 #25	ENSGT00730000111199 #27	ENSGT01070000253744.b.a.b #29	ENSGT00390000017004.a.b #30	ENSGT00940000155276.`b.b #31	ENSGT00390000014627 #32	ENSGT00390000004582 #33	ENSGT00940000158120 #34	ENSGT00940000154865 #35	ENSGT00940000154340.B #36	ENSGT00940000163077 #37	ENSGT00940000157973.h	ENSGT00940000157973.g
Common wonbat	MODERN SPECIES	1075	FBXO22 (ENSVURG00010012936)	ENSVURG00010012949	TMEM266 (ENSVURG00010012971)	ETFA (ENSVURG00010012988)	ISL2 (ENSVURG00010013003)	SCAPER (ENSVURG00010013023)	RCN2 (ENSVURG00010013103)	PSTPIP1 (ENSVURG00010013125)	TSPAN3 (ENSVURG00010013142)	PEAK1 (ENSVURG00010013175)	ENSVURG00010013181	HMG20A (ENSVURG00010013186)	ENSVURG00010013191	LINGO1 (ENSVURG00010013195)	ADAMTS14 (ENSVURG00010013296) #21	PRF1 (ENSVURG00010014111) #22	PALD1 (ENSVURG00010014125) #23	NODAL (ENSVURG00010014159) #24	EIF4EBP2 (ENSVURG00010014166) #25	LRRC20 (ENSVURG00010014173) #27	NPFFR1 (ENSVURG00010014188) #29	ENSVURG00010014198 #30	ENSVURG00010014209 #31	TYSND1 (ENSVURG00010014223) #32	AIFM2 (ENSVURG00010014241) #33	MACROH2A2 (ENSVURG00010014256) #34	COL13A1 (ENSVURG00010014283) #35	FAM241B (ENSVURG00010014398) #36	NEUROG3 (ENSVURG00010014408) #37	ENSVURG00010014421	TACR2 (ENSVURG00010014437)
koala	MODERN SPECIES	267												HMG20A (ENSPCIG00000028161)	LINGO1 (ENSPCIG00000017925)	ENSPCIG00000009476	ADAMTS14 (ENSPCIG00000033687) #21	PRF1 (ENSPCIG00000015263) #22	PALD1 (ENSPCIG00000015266) #23	NODAL (ENSPCIG00000015277) #24	EIF4EBP2 (ENSPCIG00000015273) #25	LRRC20 (ENSPCIG00000015284) #27	NPFFR1 (ENSPCIG00000037358) #29	PPA1 (ENSPCIG00000015299) #30	ENSPCIG00000015309 #31	TYSND1 (ENSPCIG00000015317) #32	AIFM2 (ENSPCIG00000015321) #33	MACROH2A2 (ENSPCIG00000015324) #34	FAM241B (ENSPCIG00000031997) #36	NEUROG3 (ENSPCIG00000003234) #37	TSPAN15 (ENSPCIG00000015396)	TACR2 (ENSPCIG00000015405)	HK1 (ENSPCIG00000015422)
Wallaby	MODERN SPECIES	1687																PRF1 (ENSMEUG00000016119) #22	PALD1 (ENSMEUG00000016091) #23
Tasmanian devil	MODERN SPECIES	1	ENSSHAG00000017275	ENSSHAG00000030290	ENSSHAG00000016861	TMEM266 (ENSSHAG00000016323)	ETFA (ENSSHAG00000030361)	ISL2 (ENSSHAG00000015947)	SCAPER (ENSSHAG00000014849)	RCN2 (ENSSHAG00000028309)	ENSSHAG00000031500	TSPAN3 (ENSSHAG00000013272)	PEAK1 (ENSSHAG00000013603)	HMG20A (ENSSHAG00000012311)	ENSSHAG00000025695	ENSSHAG00000004725 #20	ADAMTS14 (ENSSHAG00000002878) #21	PRF1 (ENSSHAG00000010858) #22	PALD1 (ENSSHAG00000010283) #23	NODAL (ENSSHAG00000010040) #24	ENSSHAG00000009270 #27	PPA1 (ENSSHAG00000008870) #30	SAR1A (ENSSHAG00000008596) #31	TYSND1 (ENSSHAG00000024975) #32	AIFM2 (ENSSHAG00000008296) #33	MACROH2A2 (ENSSHAG00000007934) #34	COL13A1 (ENSSHAG00000004917) #35	FAM241B (ENSSHAG00000027672) #36	NEUROG3 (ENSSHAG00000002586) #37	TSPAN15 (ENSSHAG00000001204)	HK1 (ENSSHAG00000004335)	HKDC1 (ENSSHAG00000025184)	SUPV3L1 (ENSSHAG00000000910)
Opossum	MODERN SPECIES		CHRNA3 (ENSMODG00000011883)	ENSMODG00000011891	UBE2Q2 (ENSMODG00000011919)	FBXO22 (ENSMODG00000011928)	NRG4 (ENSMODG00000027669)	TMEM266 (ENSMODG00000011936)	ETFA (ENSMODG00000011967)	ISL2 (ENSMODG00000011982)	SCAPER (ENSMODG00000012042)	RCN2 (ENSMODG00000012080)	PSTPIP1 (ENSMODG00000048381)	ENSMODG00000012103	PEAK1 (ENSMODG00000012107)	HMG20A (ENSMODG00000012113)	LINGO1 (ENSMODG00000025399)	PRF1 (ENSMODG00000041159) #22	NODAL (ENSMODG00000012158) #24	EIF4EBP2 (ENSMODG00000012161) #25	ENSMODG00000012163	LRRC20 (ENSMODG00000012169) #27	NPFFR1 (ENSMODG00000046812) #29	ENSMODG00000012176 #30	SAR1A (ENSMODG00000012190) #31	TYSND1 (ENSMODG00000012195) #32	AIFM2 (ENSMODG00000012201) #33	MACROH2A2 (ENSMODG00000040146) #34	ENSMODG00000012220 #35	ENSMODG00000012225 #36	ENSMODG00000012237	ENSMODG00000006953	PTPRE (ENSMODG00000006941)
Platypus	DUPLICATION
Platypus	MODERN SPECIES	11	TMEM265 (ENSOANG00000048125)	PHKG2 (ENSOANG00000009751)	ENSOANG00000047147	RNF40 (ENSOANG00000009749)	ZNF629 (ENSOANG00000040419)	ENSOANG00000020561	BCL7C (ENSOANG00000011812)	CTF1 (ENSOANG00000015376)	ENSOANG00000037895	FBXL19 (ENSOANG00000048872)	ORAI3 (ENSOANG00000037607)	ENSOANG00000013155	HSD3B7 (ENSOANG00000050108)	STX1B (ENSOANG00000051299)	STX4 (ENSOANG00000012988)	ENSOANG00000036434 #22	ZNF668 (ENSOANG00000049191)	ZNF646 (ENSOANG00000048168)	PRSS53 (ENSOANG00000010372)	VKORC1 (ENSOANG00000045950)	BCKDK (ENSOANG00000004846)	KAT8 (ENSOANG00000039125)	PRSS8 (ENSOANG00000037319)	PRSS36 (ENSOANG00000044565)	FUS (ENSOANG00000005606)	PYCARD (ENSOANG00000001386)	TRIM72 (ENSOANG00000049112)	ENSOANG00000010761	ENSOANG00000007661	ENSOANG00000037121	ENSOANG00000006507
Platypus	DUPLICATION
Platypus	MODERN SPECIES	14	ANAPC16 (ENSOANG00000037927)	ASCC1 (ENSOANG00000011748) #7	SPOCK2 (ENSOANG00000011747) #9	CHST3 (ENSOANG00000015873) #10	PSAP (ENSOANG00000011746) #11	CDH23 (ENSOANG00000041676) #12	ENSOANG00000011744 #13	ENSOANG00000044553 #14	SLC29A3 (ENSOANG00000043491) #15	UNC5B (ENSOANG00000004338) #16	PCBD1 (ENSOANG00000030333) #18	SGPL1 (ENSOANG00000011007) #19	ENSOANG00000002656 #20	ADAMTS14 (ENSOANG00000048719) #21	ENSOANG00000010037 #22	ENSOANG00000039991 #22	PALD1 (ENSOANG00000011806) #23	ENSOANG00000044417 #24	EIF4EBP2 (ENSOANG00000041057) #25	LRRC20 (ENSOANG00000039409) #27	NPFFR1 (ENSOANG00000043807) #29	ENSOANG00000012149 #30	MACROH2A2 (ENSOANG00000044304) #34	SAR1A (ENSOANG00000037626) #31	ENSOANG00000036780 #32	AIFM2 (ENSOANG00000012147) #33	COL13A1 (ENSOANG00000031524) #35	ENSOANG00000000835	ENSOANG00000047301 #37	TSPAN15 (ENSOANG00000038840)	TACR2 (ENSOANG00000008889)
Platypus	MODERN SPECIES	14	DDIT4 (ENSOANG00000045405)	ANAPC16 (ENSOANG00000037927)	ASCC1 (ENSOANG00000011748) #7	SPOCK2 (ENSOANG00000011747) #9	CHST3 (ENSOANG00000015873) #10	PSAP (ENSOANG00000011746) #11	CDH23 (ENSOANG00000041676) #12	ENSOANG00000011744 #13	ENSOANG00000044553 #14	SLC29A3 (ENSOANG00000043491) #15	UNC5B (ENSOANG00000004338) #16	PCBD1 (ENSOANG00000030333) #18	SGPL1 (ENSOANG00000011007) #19	ENSOANG00000002656 #20	ADAMTS14 (ENSOANG00000048719) #21	ENSOANG00000010037 #22	ENSOANG00000039991 #22	PALD1 (ENSOANG00000011806) #23	ENSOANG00000044417 #24	EIF4EBP2 (ENSOANG00000041057) #25	LRRC20 (ENSOANG00000039409) #27	NPFFR1 (ENSOANG00000043807) #29	ENSOANG00000012149 #30	MACROH2A2 (ENSOANG00000044304) #34	SAR1A (ENSOANG00000037626) #31	ENSOANG00000036780 #32	AIFM2 (ENSOANG00000012147) #33	COL13A1 (ENSOANG00000031524) #35	ENSOANG00000000835	ENSOANG00000047301 #37	TSPAN15 (ENSOANG00000038840)
Sauria	DUPLICATION
Sauria	DUPLICATION
Sauria	ANCESTRAL SPECIES	112													ENSGT00940000162122	ENSGT00940000161588	ENSGT00940000165156	ENSGT00530000063725.i.a #22	ENSGT00990000203866
Archelosauria	ANCESTRAL SPECIES	233															ENSGT00990000203866	ENSGT00530000063725.i.a #22
Cryptodira	DUPLICATION
Cryptodira	ANCESTRAL SPECIES																	ENSGT00530000063725.i.a.a #22
Testudinoidea	ANCESTRAL SPECIES	44							ENSGT01030000234646.A	ENSGT00940000157421	ENSGT00940000162122	ENSGT00530000063725.i.a.b.d #22	ENSGT00940000154390.A.j.c.a.b.b	ENSGT00940000161588	ENSGT00940000165156	ENSGT00940000177683	ENSGT00530000063725.i.a.b.c #22	ENSGT00530000063725.i.a.a #22	ENSGT01030000234627.a.b.b	ENSGT01030000234627.a.a.d	ENSGT00940000160236	ENSGT01100000263552.g.b.b.b.c.a.a.a.b	ENSGT01100000263552.g.b.b.b.c.a.a.a.a.a	ENSGT01100000263491.a.b.a.a.a.a.a.a.a.b	ENSGT00510000048856.B	ENSGT00510000048856.A	ENSGT00390000002172.A.b	ENSGT00940000154411.`b.i.h	ENSGT01100000263552.g.b.b.a.a.a.a	ENSGT00940000160707.a.a	ENSGT00940000160215	ENSGT00940000154615	ENSGT00940000162015.a.b
Testudinidae	ANCESTRAL SPECIES	340															ENSGT00530000063725.i.a.b.c #22	ENSGT00530000063725.i.a.a #22
Goode s thornscrub tortoise	MODERN SPECIES	18	ENSGEVG00005011593	ENSGEVG00005011610	ENSGEVG00005011623	ENSGEVG00005011636	ENSGEVG00005011680	BCKDK (ENSGEVG00005011696)	VKORC1 (ENSGEVG00005011730)	ENSGEVG00005011754	ENSGEVG00005011802	PRSS53 (ENSGEVG00005011846)	ENSGEVG00005011946 #22	ENSGEVG00005012038	ZNF646 (ENSGEVG00005012061)	ENSGEVG00005012077	ENSGEVG00005012096	ENSGEVG00005012147 #22	ENSGEVG00005012183 #22	ENSGEVG00005012260 #22	ENSGEVG00005012304 #22	STX4 (ENSGEVG00005012347)	STX1B (ENSGEVG00005012373)	HSD3B7 (ENSGEVG00005012512)	ENSGEVG00005012542	ENSGEVG00005012593	ENSGEVG00005012616	ENSGEVG00005012647	ENSGEVG00005012671	ENSGEVG00005012689	ENSGEVG00005012704	CTF1 (ENSGEVG00005012797)	BCL7C (ENSGEVG00005012824)
Abingdon island giant tortoise	MODERN SPECIES	2450	ENSCABG00000019416	BCKDK (ENSCABG00000019417)	VKORC1 (ENSCABG00000019419)	ENSCABG00000019421	ENSCABG00000019422	PRSS53 (ENSCABG00000019425)	ENSCABG00000019427 #22	ENSCABG00000019429	ZNF646 (ENSCABG00000019436)	ENSCABG00000019445	ENSCABG00000019447	ENSCABG00000019451 #22	ENSCABG00000019455 #22	ENSCABG00000019456 #22	ENSCABG00000019458 #22	ENSCABG00000019461 #22	STX4 (ENSCABG00000019462)	STX1B (ENSCABG00000019467)	HSD3B7 (ENSCABG00000019474)	ENSCABG00000019478	ORAI3 (ENSCABG00000019481)	ENSCABG00000019484	ENSCABG00000019485	ENSCABG00000019487
Chinese turtle	MODERN SPECIES	1964												PRSS53 (ENSPSIG00000004788)	ENSPSIG00000005435	ZNF646 (ENSPSIG00000005522)	ENSPSIG00000005762 #22	ENSPSIG00000006163 #22	ENSPSIG00000006174 #22	ENSPSIG00000006216 #22	ENSPSIG00000006225 #22	ENSPSIG00000006683 #22	STX1B (ENSPSIG00000004535)	HSD3B7 (ENSPSIG00000004936)	ENSPSIG00000005027	ENSPSIG00000005787	ENSPSIG00000005792	ENSPSIG00000000967	ENSPSIG00000005803	CTF1 (ENSPSIG00000005880)	ENSPSIG00000000985	ENSPSIG00000005906	ENSPSIG00000000998
Cryptodira	ANCESTRAL SPECIES	69								ENSGT01030000234646.A	ENSGT00940000157421	ENSGT00940000162122	ENSGT00940000154390.A.j.c.a.b.b	ENSGT00940000161588	ENSGT00940000165156	ENSGT00940000177683	ENSGT00990000203866.b	ENSGT00530000063725.i.a.b #22	ENSGT01030000234627.a.b.b	ENSGT01030000234627.a.a.d	ENSGT00940000160236	ENSGT01030000234576.D.a.b.b	ENSGT00940000160215	ENSGT00940000154615	ENSGT00940000162015.a.b	ENSGT00940000162015.a.a	ENSGT00940000154999.B.h	ENSGT00940000154999.A.g.a.a	ENSGT00940000154999.A.g.b	ENSGT00940000155138.k.b	ENSGT00390000018316.b.a	ENSGT00940000161127	ENSGT00940000154762.a.a
Chinese turtle	DUPLICATION
Chinese turtle	MODERN SPECIES	1964													PRSS53 (ENSPSIG00000004788)	ENSPSIG00000005435	ZNF646 (ENSPSIG00000005522)	ENSPSIG00000005762 #22	ENSPSIG00000006163 #22	ENSPSIG00000006174 #22	ENSPSIG00000006216 #22	ENSPSIG00000006225 #22	ENSPSIG00000006683 #22	STX1B (ENSPSIG00000004535)	HSD3B7 (ENSPSIG00000004936)	ENSPSIG00000005027	ENSPSIG00000005787	ENSPSIG00000005792	ENSPSIG00000000967	ENSPSIG00000005803	CTF1 (ENSPSIG00000005880)	ENSPSIG00000000985	ENSPSIG00000005906
Chinese turtle	MODERN SPECIES	782																ENSPSIG00000009272 #22
Testudinoidea	DUPLICATION
Testudinoidea	ANCESTRAL SPECIES	44								ENSGT01030000234646.A	ENSGT00940000157421	ENSGT00940000162122	ENSGT00530000063725.i.a.b.d #22	ENSGT00940000154390.A.j.c.a.b.b	ENSGT00940000161588	ENSGT00940000165156	ENSGT00940000177683	ENSGT00530000063725.i.a.b.c #22	ENSGT00530000063725.i.a.a #22	ENSGT01030000234627.a.b.b	ENSGT01030000234627.a.a.d	ENSGT00940000160236	ENSGT01100000263552.g.b.b.b.c.a.a.a.b	ENSGT01100000263552.g.b.b.b.c.a.a.a.a.a	ENSGT01100000263491.a.b.a.a.a.a.a.a.a.b	ENSGT00510000048856.B	ENSGT00510000048856.A	ENSGT00390000002172.A.b	ENSGT00940000154411.`b.i.h	ENSGT01100000263552.g.b.b.a.a.a.a	ENSGT00940000160707.a.a	ENSGT00940000160215	ENSGT00940000154615
Emydidae	DUPLICATION
Emydidae	ANCESTRAL SPECIES	72					ENSGT00940000154390.A.j.c.a.a.d	ENSGT01030000235085.e.b.b.b	ENSGT00940000154390.A.j.c.a.a.c.a.b	ENSGT00940000154390.A.j.c.a.a.c.a.a	ENSGT01030000234646.A	ENSGT00940000157421	ENSGT00940000162122	ENSGT00940000154390.A.j.c.a.b.b	ENSGT00940000161588	ENSGT00940000165156	ENSGT00940000177683	ENSGT00530000063725.i.a.b.c.a #22	ENSGT01030000234627.a.b.b	ENSGT01030000234627.a.a.d	ENSGT00940000160236	ENSGT01100000263552.g.b.b.b.c.a.a.a.b	ENSGT01100000263552.g.b.b.b.c.a.a.a.a.a	ENSGT00510000048856.B	ENSGT00510000048856.A	ENSGT00390000002172.A.b	ENSGT00940000154411.`b.i.h	ENSGT01100000263552.g.b.b.a.a.a.a	ENSGT00940000160707.a.a	ENSGT00940000160215	ENSGT01030000234601.d	ENSGT00940000154615	ENSGT00940000162015.a.b
painted turtle	DUPLICATION
painted turtle	MODERN SPECIES	2394	ENSCPBG00000010123	ENSCPBG00000010050	ENSCPBG00000010034	ENSCPBG00000010028	ENSCPBG00000010026	ENSCPBG00000010022	ENSCPBG00000009913	ENSCPBG00000009898	PRSS53 (ENSCPBG00000009890)	ENSCPBG00000009886	ENSCPBG00000009883	ENSCPBG00000009879	ZNF646 (ENSCPBG00000009878)	ENSCPBG00000009875	ENSCPBG00000009873	ENSCPBG00000009871 #22	ENSCPBG00000009866 #22	ENSCPBG00000009863	ENSCPBG00000009861 #22	ENSCPBG00000009857	STX4 (ENSCPBG00000009848)	STX1B (ENSCPBG00000009841)	HCRT (ENSCPBG00000009836)	KCNH4 (ENSCPBG00000009830)	RAB5C (ENSCPBG00000009826)	ENSCPBG00000009824	ENSCPBG00000009820	ENSCPBG00000009818	KAT2A (ENSCPBG00000006907)	DHX58 (ENSCPBG00000006804)	ENSCPBG00000006797
painted turtle	MODERN SPECIES	2394	ENSCPBG00000010050	ENSCPBG00000010034	ENSCPBG00000010028	ENSCPBG00000010026	ENSCPBG00000010022	ENSCPBG00000009913	ENSCPBG00000009898	PRSS53 (ENSCPBG00000009890)	ENSCPBG00000009886	ENSCPBG00000009883	ENSCPBG00000009879	ZNF646 (ENSCPBG00000009878)	ENSCPBG00000009875	ENSCPBG00000009873	ENSCPBG00000009871 #22	ENSCPBG00000009866 #22	ENSCPBG00000009863	ENSCPBG00000009861 #22	ENSCPBG00000009857	STX4 (ENSCPBG00000009848)	STX1B (ENSCPBG00000009841)	HCRT (ENSCPBG00000009836)	KCNH4 (ENSCPBG00000009830)	RAB5C (ENSCPBG00000009826)	ENSCPBG00000009824	ENSCPBG00000009820	ENSCPBG00000009818	KAT2A (ENSCPBG00000006907)	DHX58 (ENSCPBG00000006804)	ENSCPBG00000006797	ZNF385C (ENSCPBG00000006782)
Three-toed box turtle	MODERN SPECIES	194				ENSTMTG00000021192	ENSTMTG00000021197	ENSTMTG00000021199	ENSTMTG00000021203	ENSTMTG00000021210	BCKDK (ENSTMTG00000021213)	ENSTMTG00000021220	ENSTMTG00000021236	PRSS53 (ENSTMTG00000021246)	ENSTMTG00000021282	ZNF646 (ENSTMTG00000021291)	ENSTMTG00000021298	ENSTMTG00000021333 #22	STX4 (ENSTMTG00000021345)	STX1B (ENSTMTG00000021354)	HSD3B7 (ENSTMTG00000021375)	ENSTMTG00000021382	ENSTMTG00000021388	ENSTMTG00000021398	ENSTMTG00000021403	ENSTMTG00000021406	CTF1 (ENSTMTG00000021411)	ENSTMTG00000021415	ENSTMTG00000021421	ENSTMTG00000021427	ENSTMTG00000021430	ENSTMTG00000021434	ENSTMTG00000021441
Emydidae	ANCESTRAL SPECIES	242															ENSGT00990000203866.b	ENSGT00530000063725.i.a.b.c.b #22	ENSGT00990000203866.a
painted turtle	MODERN SPECIES	2394	ENSCPBG00000010028	ENSCPBG00000010026	ENSCPBG00000010022	ENSCPBG00000009913	ENSCPBG00000009898	PRSS53 (ENSCPBG00000009890)	ENSCPBG00000009886	ENSCPBG00000009883	ENSCPBG00000009879	ZNF646 (ENSCPBG00000009878)	ENSCPBG00000009875	ENSCPBG00000009873	ENSCPBG00000009871 #22	ENSCPBG00000009866 #22	ENSCPBG00000009863	ENSCPBG00000009861 #22	ENSCPBG00000009857	STX4 (ENSCPBG00000009848)	STX1B (ENSCPBG00000009841)	HCRT (ENSCPBG00000009836)	KCNH4 (ENSCPBG00000009830)	RAB5C (ENSCPBG00000009826)	ENSCPBG00000009824	ENSCPBG00000009820	ENSCPBG00000009818	KAT2A (ENSCPBG00000006907)	DHX58 (ENSCPBG00000006804)	ENSCPBG00000006797	ZNF385C (ENSCPBG00000006782)	NKIRAS2 (ENSCPBG00000006772)	DNAJC7 (ENSCPBG00000006760)
Three-toed box turtle	MODERN SPECIES	2116															ENSTMTG00000018454	ENSTMTG00000018464 #22
Testudinidae	ANCESTRAL SPECIES	340																ENSGT00530000063725.i.a.b.c #22	ENSGT00530000063725.i.a.a #22
Abingdon island giant tortoise	DUPLICATION
Abingdon island giant tortoise	DUPLICATION
Abingdon island giant tortoise	DUPLICATION
Abingdon island giant tortoise	MODERN SPECIES	2450			ENSCABG00000019412	ENSCABG00000019416	BCKDK (ENSCABG00000019417)	VKORC1 (ENSCABG00000019419)	ENSCABG00000019421	ENSCABG00000019422	PRSS53 (ENSCABG00000019425)	ENSCABG00000019427 #22	ENSCABG00000019429	ZNF646 (ENSCABG00000019436)	ENSCABG00000019445	ENSCABG00000019447	ENSCABG00000019451 #22	ENSCABG00000019455 #22	ENSCABG00000019456 #22	ENSCABG00000019458 #22	ENSCABG00000019461 #22	STX4 (ENSCABG00000019462)	STX1B (ENSCABG00000019467)	HSD3B7 (ENSCABG00000019474)	ENSCABG00000019478	ORAI3 (ENSCABG00000019481)	ENSCABG00000019484	ENSCABG00000019485	ENSCABG00000019487
Abingdon island giant tortoise	MODERN SPECIES	2450				ENSCABG00000019412	ENSCABG00000019416	BCKDK (ENSCABG00000019417)	VKORC1 (ENSCABG00000019419)	ENSCABG00000019421	ENSCABG00000019422	PRSS53 (ENSCABG00000019425)	ENSCABG00000019427 #22	ENSCABG00000019429	ZNF646 (ENSCABG00000019436)	ENSCABG00000019445	ENSCABG00000019447	ENSCABG00000019451 #22	ENSCABG00000019455 #22	ENSCABG00000019456 #22	ENSCABG00000019458 #22	ENSCABG00000019461 #22	STX4 (ENSCABG00000019462)	STX1B (ENSCABG00000019467)	HSD3B7 (ENSCABG00000019474)	ENSCABG00000019478	ORAI3 (ENSCABG00000019481)	ENSCABG00000019484	ENSCABG00000019485	ENSCABG00000019487
Abingdon island giant tortoise	MODERN SPECIES	2450		ENSCABG00000019412	ENSCABG00000019416	BCKDK (ENSCABG00000019417)	VKORC1 (ENSCABG00000019419)	ENSCABG00000019421	ENSCABG00000019422	PRSS53 (ENSCABG00000019425)	ENSCABG00000019427 #22	ENSCABG00000019429	ZNF646 (ENSCABG00000019436)	ENSCABG00000019445	ENSCABG00000019447	ENSCABG00000019451 #22	ENSCABG00000019455 #22	ENSCABG00000019456 #22	ENSCABG00000019458 #22	ENSCABG00000019461 #22	STX4 (ENSCABG00000019462)	STX1B (ENSCABG00000019467)	HSD3B7 (ENSCABG00000019474)	ENSCABG00000019478	ORAI3 (ENSCABG00000019481)	ENSCABG00000019484	ENSCABG00000019485	ENSCABG00000019487
Abingdon island giant tortoise	MODERN SPECIES	2450	ENSCABG00000019412	ENSCABG00000019416	BCKDK (ENSCABG00000019417)	VKORC1 (ENSCABG00000019419)	ENSCABG00000019421	ENSCABG00000019422	PRSS53 (ENSCABG00000019425)	ENSCABG00000019427 #22	ENSCABG00000019429	ZNF646 (ENSCABG00000019436)	ENSCABG00000019445	ENSCABG00000019447	ENSCABG00000019451 #22	ENSCABG00000019455 #22	ENSCABG00000019456 #22	ENSCABG00000019458 #22	ENSCABG00000019461 #22	STX4 (ENSCABG00000019462)	STX1B (ENSCABG00000019467)	HSD3B7 (ENSCABG00000019474)	ENSCABG00000019478	ORAI3 (ENSCABG00000019481)	ENSCABG00000019484	ENSCABG00000019485	ENSCABG00000019487
Testudinoidea	ANCESTRAL SPECIES	44													ENSGT01030000234646.A	ENSGT00940000157421	ENSGT00940000162122	ENSGT00530000063725.i.a.b.d #22	ENSGT00940000154390.A.j.c.a.b.b	ENSGT00940000161588	ENSGT00940000165156	ENSGT00940000177683	ENSGT00530000063725.i.a.b.c #22	ENSGT00530000063725.i.a.a #22	ENSGT01030000234627.a.b.b	ENSGT01030000234627.a.a.d	ENSGT00940000160236	ENSGT01100000263552.g.b.b.b.c.a.a.a.b	ENSGT01100000263552.g.b.b.b.c.a.a.a.a.a	ENSGT01100000263491.a.b.a.a.a.a.a.a.a.b	ENSGT00510000048856.B	ENSGT00510000048856.A	ENSGT00390000002172.A.b
Testudinidae	ANCESTRAL SPECIES	72								ENSGT01100000263496.C.b.f	ENSGT00940000163951.c.a.b	ENSGT00940000154390.A.j.c.a.a.d	ENSGT01030000235085.e.b.b.b	ENSGT01030000234646.A	ENSGT00940000157421	ENSGT00940000160153.e.b	ENSGT00940000162122	ENSGT00530000063725.i.a.b.d #22	ENSGT00940000154390.A.j.c.a.b.b	ENSGT00940000161588	ENSGT00940000165156	ENSGT00530000067530	ENSGT00530000063725.i.b.a #22	ENSGT01030000234627.a.b.b	ENSGT01030000234627.a.a.d	ENSGT00940000160236	ENSGT00940000162290	ENSGT00390000015354.c.a	ENSGT01100000263552.g.b.b.b.c.a.a.a.b	ENSGT01100000263552.g.b.b.b.c.a.a.a.a.a	ENSGT01100000263491.a.b.a.a.a.a.a.a.a.b	ENSGT00510000048856.B	ENSGT00510000048856.A
Abingdon island giant tortoise	MODERN SPECIES	2450									ENSCABG00000019412	ENSCABG00000019416	BCKDK (ENSCABG00000019417)	VKORC1 (ENSCABG00000019419)	ENSCABG00000019421	ENSCABG00000019422	PRSS53 (ENSCABG00000019425)	ENSCABG00000019427 #22	ENSCABG00000019429	ZNF646 (ENSCABG00000019436)	ENSCABG00000019445	ENSCABG00000019447	ENSCABG00000019451 #22	ENSCABG00000019455 #22	ENSCABG00000019456 #22	ENSCABG00000019458 #22	ENSCABG00000019461 #22	STX4 (ENSCABG00000019462)	STX1B (ENSCABG00000019467)	HSD3B7 (ENSCABG00000019474)	ENSCABG00000019478	ORAI3 (ENSCABG00000019481)	ENSCABG00000019484
Goode s thornscrub tortoise	MODERN SPECIES	18	ENSGEVG00005011369	ENSGEVG00005011400	ENSGEVG00005011412	ENSGEVG00005011468	ENSGEVG00005011563	ENSGEVG00005011593	ENSGEVG00005011610	ENSGEVG00005011623	ENSGEVG00005011636	ENSGEVG00005011680	BCKDK (ENSGEVG00005011696)	VKORC1 (ENSGEVG00005011730)	ENSGEVG00005011754	ENSGEVG00005011802	PRSS53 (ENSGEVG00005011846)	ENSGEVG00005011946 #22	ENSGEVG00005012038	ZNF646 (ENSGEVG00005012061)	ENSGEVG00005012077	ENSGEVG00005012096	ENSGEVG00005012147 #22	ENSGEVG00005012183 #22	ENSGEVG00005012260 #22	ENSGEVG00005012304 #22	STX4 (ENSGEVG00005012347)	STX1B (ENSGEVG00005012373)	HSD3B7 (ENSGEVG00005012512)	ENSGEVG00005012542	ENSGEVG00005012593	ENSGEVG00005012616	ENSGEVG00005012647
Lepidosauria	ANCESTRAL SPECIES	108		ENSGT00830000128447.a	ENSGT00940000161873	ENSGT01100000263552.h.b.s.b.a	ENSGT00940000159512	ENSGT00940000154999.A.h	ENSGT00940000157290	ENSGT00940000160912	ENSGT00940000154390.A.j.c.b	ENSGT00950000185058	ENSGT01030000234646.A	ENSGT00940000157421	ENSGT00940000162122	ENSGT00940000161588	ENSGT00940000165156	ENSGT00530000063725.i.a #22	ENSGT01030000234627.a.b.b	ENSGT01030000234627.a.a.d	ENSGT00940000160236	ENSGT00940000162290	ENSGT00390000015354.c.a	ENSGT00940000167798	ENSGT01100000263491.a.b.a.a.a.a.a.a.a	ENSGT00510000048856.B	ENSGT00510000048856.A	ENSGT00390000002172.A.b
Episquamata	ANCESTRAL SPECIES	5	ENSGT00940000164039.d	ENSGT00830000128447.a	ENSGT00940000161873	ENSGT01100000263552.h.b.s.b.a.a	ENSGT01100000263552.h.b.s.b.a.b	ENSGT00940000159512	ENSGT00940000154999.A.h	ENSGT00940000157290	ENSGT00940000160912	ENSGT00940000154390.A.j.c.b	ENSGT01030000234646.A	ENSGT00940000157421	ENSGT00940000162122	ENSGT00940000161588	ENSGT00940000165156	ENSGT00530000063725.i.a #22	ENSGT01030000234627.a.b.b	ENSGT01030000234627.a.a.d	ENSGT00940000160236	ENSGT00940000162290	ENSGT00390000015354.c.a	ENSGT00940000167798	ENSGT01100000263491.a.b.a.a.a.a.a.a.a	ENSGT00510000048856.B	ENSGT00510000048856.A	ENSGT00390000002172.A.b	ENSGT01030000234576.D.a.b.b	ENSGT00940000160215	ENSGT00940000158537.p.b	ENSGT01050000244815.A.c.a.a.a.t	ENSGT01060000248581.C.a.a.w
Laterata	ANCESTRAL SPECIES	24	ENSGT00940000161791	ENSGT00830000128447.a	ENSGT00940000161873.b	ENSGT01100000263552.h.b.s.b.a.a	ENSGT01100000263552.h.b.s.b.a.b	ENSGT00940000159512	ENSGT00940000154999.A.h	ENSGT00940000157290	ENSGT00940000160912	ENSGT00940000154390.A.j.c.b.c	ENSGT01030000234646.A	ENSGT00940000157421.db	ENSGT00940000162122	ENSGT00940000161588	ENSGT00940000165156	ENSGT00530000063725.i.a #22	ENSGT01030000234627.a.b.b	ENSGT01030000234627.a.a.d	ENSGT00940000160236	ENSGT00940000162290.l	ENSGT00390000015354.c.a	ENSGT00940000167798	ENSGT01100000263491.a.b.a.a.a.a.a.a.a	ENSGT00510000048856.B	ENSGT00510000048856.A	ENSGT00390000002172.A.b	ENSGT01100000263521.a.a.b.a.a.f.a	ENSGT01030000234669.M.b.a.b.a.b.a	ENSGT01100000263533.b.b.b.b.b.w	ENSGT01100000263552.g.b.b.b	ENSGT00940000163677.a.b.b
Common wall lizard	MODERN SPECIES	4	ENSPMRG00000015671	ENSPMRG00000015676	ENSPMRG00000015681	ENSPMRG00000015685	ENSPMRG00000015696	BCKDK (ENSPMRG00000015748)	ENSPMRG00000015848	ENSPMRG00000015859	ENSPMRG00000015870	ENSPMRG00000015880	ENSPMRG00000015888	ENSPMRG00000015891	PRSS53 (ENSPMRG00000015898)	ENSPMRG00000015926	ENSPMRG00000015991	ENSPMRG00000015995 #22	STX4 (ENSPMRG00000016002)	STX1B (ENSPMRG00000016022)	HSD3B7 (ENSPMRG00000016033)	ENSPMRG00000016041	ENSPMRG00000016047	ORAI3 (ENSPMRG00000016059)	ENSPMRG00000016067	ENSPMRG00000016071	ENSPMRG00000016076	ENSPMRG00000016081	CTF1 (ENSPMRG00000016084)	BCL7C (ENSPMRG00000016087)	ENSPMRG00000016091	ENSPMRG00000016096	ENSPMRG00000016102
Argentine black and white tegu	MODERN SPECIES	38	PYCARD (ENSSMRG00000007057)	ENSSMRG00000007051	ENSSMRG00000007049	KAT8 (ENSSMRG00000007042)	PRSS8 (ENSSMRG00000007032)	FUS (ENSSMRG00000007023)	SULT1C2 (ENSSMRG00000007006)	ENSSMRG00000007004	BCKDK (ENSSMRG00000006999)	VKORC1 (ENSSMRG00000006996)	ENSSMRG00000006994	PRSS53 (ENSSMRG00000006992)	ENSSMRG00000006991	ENSSMRG00000006987	ENSSMRG00000006985	PRF1 (ENSSMRG00000006982) #22	STX4 (ENSSMRG00000006978)	STX1B (ENSSMRG00000006974)	HSD3B7 (ENSSMRG00000006958)	ENSSMRG00000006954	ENSSMRG00000006949	ORAI3 (ENSSMRG00000006946)	ENSSMRG00000006936	ENSSMRG00000006930	ENSSMRG00000006926	CTF1 (ENSSMRG00000006922)	BCL7C (ENSSMRG00000006913)	ENSSMRG00000006906	ENSSMRG00000006901	ENSSMRG00000006895	IK (ENSSMRG00000006884)
Toxicofera	ANCESTRAL SPECIES	13	ENSGT00940000154838.C.o.b	ENSGT00940000161791	ENSGT01030000235085	ENSGT00940000161873	ENSGT01100000263552.h.b.s.b.a.a	ENSGT01100000263552.h.b.s.b.a.b	ENSGT00940000159512	ENSGT00940000154999.A.h	ENSGT00940000157290	ENSGT00940000160912	ENSGT01030000234646.A	ENSGT00940000157421	ENSGT00940000162122	ENSGT00940000161588	ENSGT00940000165156	ENSGT00530000063725.i.a #22	ENSGT01030000234627.a.b.b	ENSGT01030000234627.a.a.d	ENSGT00940000160236	ENSGT00940000162290	ENSGT00390000015354.c.a	ENSGT01100000263491.a.b.a.a.a.a.a.a.a	ENSGT00510000048856.B	ENSGT00510000048856.A	ENSGT00390000002172.A.b	ENSGT01030000234669.M.b.a.b.a.b.a	ENSGT01100000263533.b.b.b.b.b.w	ENSGT01100000263552.g.b.b.b	ENSGT00940000160215	ENSGT00940000158537.p.b	ENSGT01050000244815.A.c.a.a.a.t
Elapidae	ANCESTRAL SPECIES	16	ENSGT00940000154838.C.o.a	ENSGT00940000154838.C.o.b	ENSGT00940000161791	ENSGT01030000235085.c	ENSGT00940000161873.c	ENSGT01100000263552.h.b.s.b.a.b	ENSGT00940000159512	ENSGT00940000154999.A.h	ENSGT00940000157290	ENSGT00940000160912	ENSGT01030000234646.A	ENSGT00940000157421	ENSGT00940000162122	ENSGT00940000161588.a	ENSGT00940000165156	ENSGT00530000063725.i.a #22	ENSGT01030000234627.a.b.b	ENSGT01030000234627.a.a.d	ENSGT00940000160236	ENSGT00940000162290	ENSGT00390000015354.c.a	ENSGT00940000154717.xb.a	ENSGT01100000263491.a.b.a.a.a.a.a.a.a	ENSGT00510000048856.B	ENSGT00510000048856.A	ENSGT00390000002172.A.b	ENSGT01030000234576.D.a.b.b	ENSGT00940000160215	ENSGT00940000158537.p.b	ENSGT01050000244815.A.c.a.a.a.t	ENSGT01060000248581.C.a.a.w
Elapidae_a	ANCESTRAL SPECIES	86	ENSGT00940000160533.k	ENSGT00940000160447	ENSGT00940000154838.C.o.a	ENSGT00940000161791	ENSGT01030000235085.c	ENSGT00940000161873.c	ENSGT01100000263552.h.b.s.b.a.b	ENSGT00940000159512	ENSGT00940000154999.A.h	ENSGT01030000234646.A	ENSGT00940000157421	ENSGT00940000162122	ENSGT00940000161588.a	ENSGT00940000177683	ENSGT00940000165156	ENSGT00530000063725.i.a #22	ENSGT01030000234627.a.b.b	ENSGT01030000234627.a.a.d	ENSGT00940000160236	ENSGT00940000162290	ENSGT00390000015354.c.a	ENSGT00940000154717.xb.a	ENSGT00510000048856.B	ENSGT00510000048856.A	ENSGT00390000002172.A.b	ENSGT00940000154715.b.k.b.a.b.b.a.b.b	ENSGT01030000234576.D.a.b.b	ENSGT00940000160215	ENSGT00940000158537.p.b	ENSGT01050000244815.A.c.a.a.a.t	ENSGT01060000248581.C.a.a.w
Acanthophiinae	ANCESTRAL SPECIES	31	ENSGT00390000009109	ENSGT00940000160447	ENSGT00940000154838.C.o.a	ENSGT00940000154612	ENSGT00940000154838.C.o.b	ENSGT00940000161791	ENSGT01030000235085.c	ENSGT00940000161873.c	ENSGT01100000263552.h.b.s.b.a.b	ENSGT00940000159512	ENSGT00940000154999.A.h	ENSGT01030000234646.A	ENSGT00940000157421	ENSGT00940000162122	ENSGT00940000165156	ENSGT00530000063725.i.a #22	ENSGT01030000234627.a.b.b	ENSGT01030000234627.a.a.d	ENSGT00940000160236	ENSGT00940000162290.i	ENSGT00390000015354.c.a	ENSGT00940000154717.xb.a	ENSGT00510000048856.B	ENSGT00510000048856.A	ENSGT00390000002172.A.b	ENSGT00940000154715.b.k.b.a.b.b.a.b.b	ENSGT01030000234576.D.a.b.b	ENSGT00940000160215	ENSGT00940000158537.p.b	ENSGT01050000244815.A.c.a.a.a.t	ENSGT01060000248581.C.a.a.w
Mainland tiger snake	MODERN SPECIES	197	ENSNSUG00000011075	ENSNSUG00000011078	ENSNSUG00000011079	ENSNSUG00000011080	PYCARD (ENSNSUG00000011082)	ENSNSUG00000011083	KAT8 (ENSNSUG00000011084)	PRSS8 (ENSNSUG00000011088)	ENSNSUG00000011090	FUS (ENSNSUG00000011091)	ENSNSUG00000011093	SULT1C2 (ENSNSUG00000011095)	BCKDK (ENSNSUG00000011098)	VKORC1 (ENSNSUG00000011100)	PRSS53 (ENSNSUG00000011101)	ENSNSUG00000011102 #22	ENSNSUG00000011103	STX4 (ENSNSUG00000011104)	STX1B (ENSNSUG00000011105)	HSD3B7 (ENSNSUG00000011106)	ENSNSUG00000011107	ORAI3 (ENSNSUG00000011108)	ENSNSUG00000011109	ENSNSUG00000011110	CTF1 (ENSNSUG00000011111)	BCL7C (ENSNSUG00000011112)	ENSNSUG00000011113	ENSNSUG00000011114	MAPK7 (ENSNSUG00000011115)	ENSNSUG00000011289	ENSNSUG00000011295
Eastern brown snake	MODERN SPECIES	155								ENSPTXG00000009155	KAT8 (ENSPTXG00000009156)	ENSPTXG00000009157	BCKDK (ENSPTXG00000009158)	VKORC1 (ENSPTXG00000009162)	PRSS53 (ENSPTXG00000009168)	ENSPTXG00000009169	ENSPTXG00000009173	ENSPTXG00000009171 #22	STX4 (ENSPTXG00000009174)	STX1B (ENSPTXG00000009175)	HSD3B7 (ENSPTXG00000009212)	ENSPTXG00000009213	ORAI3 (ENSPTXG00000009214)	ENSPTXG00000009215	ENSPTXG00000009216	CTF1 (ENSPTXG00000009218)	BCL7C (ENSPTXG00000009221)	ENSPTXG00000009226	ENSPTXG00000009227	ENSPTXG00000009229	MAPK7 (ENSPTXG00000009230)	ENSPTXG00000009231	ENSPTXG00000009232
Blue-lipped sea krait	MODERN SPECIES	4569														ENSLLTG00000008912	ENSLLTG00000008904	ENSLLTG00000008886 #22
Indian cobra	MODERN SPECIES	337	ENSNNAG00000015162	ENSNNAG00000015186	ENSNNAG00000015213	ENSNNAG00000015278	KAT8 (ENSNNAG00000015303)	ENSNNAG00000015370	FUS (ENSNNAG00000015398)	ENSNNAG00000015446	ENSNNAG00000015686	ENSNNAG00000015817	BCKDK (ENSNNAG00000015844)	VKORC1 (ENSNNAG00000015860)	PRSS53 (ENSNNAG00000015870)	ENSNNAG00000015895	ENSNNAG00000015930	ENSNNAG00000015939 #22	STX4 (ENSNNAG00000015966)	STX1B (ENSNNAG00000016001)	HSD3B7 (ENSNNAG00000016032)	ENSNNAG00000016130	ENSNNAG00000016141	ORAI3 (ENSNNAG00000016159)	ENSNNAG00000016175	ENSNNAG00000016198	ENSNNAG00000016206	CTF1 (ENSNNAG00000016213)	BCL7C (ENSNNAG00000016227)	ENSNNAG00000016246	ENSNNAG00000016286	MAPK7 (ENSNNAG00000016291)	ENSNNAG00000016298
Lizard	MODERN SPECIES	834	ENSACAG00000006697	ENSACAG00000037223	ENSACAG00000006708	ENSACAG00000006748	ENSACAG00000006913	ENSACAG00000006776	ENSACAG00000043351	ENSACAG00000006961	ENSACAG00000007025	ENSACAG00000026569	ENSACAG00000037863	PRSS53 (ENSACAG00000007085)	ZNF646 (ENSACAG00000035658)	ENSACAG00000044335	ENSACAG00000022789	ENSACAG00000007274 #22	STX4 (ENSACAG00000007287)	HSD3B7 (ENSACAG00000038118)	STX1B (ENSACAG00000007428)	ENSACAG00000007606	ORAI3 (ENSACAG00000007631)	ENSACAG00000007651	ENSACAG00000042264	CTF1 (ENSACAG00000007701)	BCL7C (ENSACAG00000007705)	ENSACAG00000035121	ENSACAG00000007725	ENSACAG00000044133	ENSACAG00000007726	ENSACAG00000007736	ENSACAG00000007798
Sauria	ANCESTRAL SPECIES																	ENSGT00530000063725.i.b #22
Archelosauria	ANCESTRAL SPECIES																	ENSGT00530000063725.i.b #22
Cryptodira	ANCESTRAL SPECIES																	ENSGT00530000063725.i.b #22
Testudinoidea	DUPLICATION
Testudinoidea	ANCESTRAL SPECIES																	ENSGT00530000063725.i.b.a #22
Testudinidae	ANCESTRAL SPECIES	72			ENSGT01100000263496.C.b.f	ENSGT00940000163951.c.a.b	ENSGT00940000154390.A.j.c.a.a.d	ENSGT01030000235085.e.b.b.b	ENSGT01030000234646.A	ENSGT00940000157421	ENSGT00940000160153.e.b	ENSGT00940000162122	ENSGT00530000063725.i.a.b.d #22	ENSGT00940000154390.A.j.c.a.b.b	ENSGT00940000161588	ENSGT00940000165156	ENSGT00530000067530	ENSGT00530000063725.i.b.a #22	ENSGT01030000234627.a.b.b	ENSGT01030000234627.a.a.d	ENSGT00940000160236	ENSGT00940000162290	ENSGT00390000015354.c.a	ENSGT01100000263552.g.b.b.b.c.a.a.a.b	ENSGT01100000263552.g.b.b.b.c.a.a.a.a.a	ENSGT01100000263491.a.b.a.a.a.a.a.a.a.b	ENSGT00510000048856.B	ENSGT00510000048856.A	ENSGT00390000002172.A.b
Goode s thornscrub tortoise	DUPLICATION
Goode s thornscrub tortoise	MODERN SPECIES	18	ENSGEVG00005011636	ENSGEVG00005011680	BCKDK (ENSGEVG00005011696)	VKORC1 (ENSGEVG00005011730)	ENSGEVG00005011754	ENSGEVG00005011802	PRSS53 (ENSGEVG00005011846)	ENSGEVG00005011946 #22	ENSGEVG00005012038	ZNF646 (ENSGEVG00005012061)	ENSGEVG00005012077	ENSGEVG00005012096	ENSGEVG00005012147 #22	ENSGEVG00005012183 #22	ENSGEVG00005012260 #22	ENSGEVG00005012304 #22	STX4 (ENSGEVG00005012347)	STX1B (ENSGEVG00005012373)	HSD3B7 (ENSGEVG00005012512)	ENSGEVG00005012542	ENSGEVG00005012593	ENSGEVG00005012616	ENSGEVG00005012647	ENSGEVG00005012671	ENSGEVG00005012689	ENSGEVG00005012704	CTF1 (ENSGEVG00005012797)	BCL7C (ENSGEVG00005012824)	ENSGEVG00005012849	ENSGEVG00005012865	ENSGEVG00005012882
Goode s thornscrub tortoise	MODERN SPECIES	18	ENSGEVG00005011623	ENSGEVG00005011636	ENSGEVG00005011680	BCKDK (ENSGEVG00005011696)	VKORC1 (ENSGEVG00005011730)	ENSGEVG00005011754	ENSGEVG00005011802	PRSS53 (ENSGEVG00005011846)	ENSGEVG00005011946 #22	ENSGEVG00005012038	ZNF646 (ENSGEVG00005012061)	ENSGEVG00005012077	ENSGEVG00005012096	ENSGEVG00005012147 #22	ENSGEVG00005012183 #22	ENSGEVG00005012260 #22	ENSGEVG00005012304 #22	STX4 (ENSGEVG00005012347)	STX1B (ENSGEVG00005012373)	HSD3B7 (ENSGEVG00005012512)	ENSGEVG00005012542	ENSGEVG00005012593	ENSGEVG00005012616	ENSGEVG00005012647	ENSGEVG00005012671	ENSGEVG00005012689	ENSGEVG00005012704	CTF1 (ENSGEVG00005012797)	BCL7C (ENSGEVG00005012824)	ENSGEVG00005012849	ENSGEVG00005012865
Testudinoidea	ANCESTRAL SPECIES																	ENSGT00530000063725.i.b.b #22
Emydidae	ANCESTRAL SPECIES																	ENSGT00530000063725.i.b.b #22
Three-toed box turtle	MODERN SPECIES	1173																ENSTMTG00000018494 #22
Testudinidae	ANCESTRAL SPECIES																	ENSGT00530000063725.i.b.b #22
Goode s thornscrub tortoise	MODERN SPECIES	18	ENSGEVG00005011610	ENSGEVG00005011623	ENSGEVG00005011636	ENSGEVG00005011680	BCKDK (ENSGEVG00005011696)	VKORC1 (ENSGEVG00005011730)	ENSGEVG00005011754	ENSGEVG00005011802	PRSS53 (ENSGEVG00005011846)	ENSGEVG00005011946 #22	ENSGEVG00005012038	ZNF646 (ENSGEVG00005012061)	ENSGEVG00005012077	ENSGEVG00005012096	ENSGEVG00005012147 #22	ENSGEVG00005012183 #22	ENSGEVG00005012260 #22	ENSGEVG00005012304 #22	STX4 (ENSGEVG00005012347)	STX1B (ENSGEVG00005012373)	HSD3B7 (ENSGEVG00005012512)	ENSGEVG00005012542	ENSGEVG00005012593	ENSGEVG00005012616	ENSGEVG00005012647	ENSGEVG00005012671	ENSGEVG00005012689	ENSGEVG00005012704	CTF1 (ENSGEVG00005012797)	BCL7C (ENSGEVG00005012824)	ENSGEVG00005012849
Chinese turtle	DUPLICATION
Chinese turtle	DUPLICATION
Chinese turtle	DUPLICATION
Chinese turtle	DUPLICATION
Chinese turtle	MODERN SPECIES	546																ENSPSIG00000006463 #22
Chinese turtle	MODERN SPECIES	254																ENSPSIG00000001070 #22
Chinese turtle	MODERN SPECIES	1964	MAPK7 (ENSPSIG00000006440)	ENSPSIG00000006228	ENSPSIG00000000998	ENSPSIG00000005906	ENSPSIG00000000985	CTF1 (ENSPSIG00000005880)	ENSPSIG00000005803	ENSPSIG00000000967	ENSPSIG00000005792	ENSPSIG00000005787	ENSPSIG00000005027	HSD3B7 (ENSPSIG00000004936)	STX1B (ENSPSIG00000004535)	ENSPSIG00000006683 #22	ENSPSIG00000006225 #22	ENSPSIG00000006216 #22	ENSPSIG00000006174 #22	ENSPSIG00000006163 #22	ENSPSIG00000005762 #22	ZNF646 (ENSPSIG00000005522)	ENSPSIG00000005435	PRSS53 (ENSPSIG00000004788)
Chinese turtle	MODERN SPECIES	1964	ENSPSIG00000006228	ENSPSIG00000000998	ENSPSIG00000005906	ENSPSIG00000000985	CTF1 (ENSPSIG00000005880)	ENSPSIG00000005803	ENSPSIG00000000967	ENSPSIG00000005792	ENSPSIG00000005787	ENSPSIG00000005027	HSD3B7 (ENSPSIG00000004936)	STX1B (ENSPSIG00000004535)	ENSPSIG00000006683 #22	ENSPSIG00000006225 #22	ENSPSIG00000006216 #22	ENSPSIG00000006174 #22	ENSPSIG00000006163 #22	ENSPSIG00000005762 #22	ZNF646 (ENSPSIG00000005522)	ENSPSIG00000005435	PRSS53 (ENSPSIG00000004788)
Chinese turtle	DUPLICATION
Chinese turtle	MODERN SPECIES	1964	MFAP4 (ENSPSIG00000006542)	MAPK7 (ENSPSIG00000006440)	ENSPSIG00000006228	ENSPSIG00000000998	ENSPSIG00000005906	ENSPSIG00000000985	CTF1 (ENSPSIG00000005880)	ENSPSIG00000005803	ENSPSIG00000000967	ENSPSIG00000005792	ENSPSIG00000005787	ENSPSIG00000005027	HSD3B7 (ENSPSIG00000004936)	STX1B (ENSPSIG00000004535)	ENSPSIG00000006683 #22	ENSPSIG00000006225 #22	ENSPSIG00000006216 #22	ENSPSIG00000006174 #22	ENSPSIG00000006163 #22	ENSPSIG00000005762 #22	ZNF646 (ENSPSIG00000005522)	ENSPSIG00000005435	PRSS53 (ENSPSIG00000004788)
Chinese turtle	MODERN SPECIES	1964								PRSS53 (ENSPSIG00000004788)	ENSPSIG00000005435	ZNF646 (ENSPSIG00000005522)	ENSPSIG00000005762 #22	ENSPSIG00000006163 #22	ENSPSIG00000006174 #22	ENSPSIG00000006216 #22	ENSPSIG00000006225 #22	ENSPSIG00000006683 #22	STX1B (ENSPSIG00000004535)	HSD3B7 (ENSPSIG00000004936)	ENSPSIG00000005027	ENSPSIG00000005787	ENSPSIG00000005792	ENSPSIG00000000967	ENSPSIG00000005803	CTF1 (ENSPSIG00000005880)	ENSPSIG00000000985	ENSPSIG00000005906	ENSPSIG00000000998	ENSPSIG00000006228	MAPK7 (ENSPSIG00000006440)	MFAP4 (ENSPSIG00000006542)	ENSPSIG00000006616
Lepidosauria	ANCESTRAL SPECIES																	ENSGT00530000063725.i.b #22
Episquamata	ANCESTRAL SPECIES	5	ENSGT00390000018123.a.b	ENSGT00990000204150.A	ENSGT00990000204150.B	ENSGT00940000161519	ENSGT00390000000337	ENSGT00390000006970	ENSGT00940000160238	ENSGT00390000012563	ENSGT00410000025793.a	ENSGT01030000234574.A.b.b	ENSGT00940000163142.a.a.c.a.a	ENSGT00940000163142.b	ENSGT00940000165513.a	ENSGT00390000006227	ENSGT00390000002849	ENSGT00530000063725.i.b #22	ENSGT00940000158452	ENSGT00940000161338	ENSGT00940000167043	ENSGT00940000159238.a	ENSGT00550000076481	ENSGT00940000155044.A	ENSGT00940000153744.B	ENSGT00530000063540.b	ENSGT00390000003680.a	ENSGT00950000182991.C	ENSGT00940000157645.b.a.a	ENSGT01050000244815.A.c.a.a.a.s.a	ENSGT01060000248581.C.a.a.w	ENSGT01050000244815.A.c.a.a.a.t	ENSGT00940000158537.p.b
Laterata	ANCESTRAL SPECIES	24	ENSGT00940000160238	ENSGT00390000012563	ENSGT00410000025793.a	ENSGT01030000234574.A.b.b	ENSGT00940000163142.a.a.c.a.a	ENSGT00940000163142.b	ENSGT00940000164054	ENSGT00940000163142.a.a.c.b	ENSGT00940000162874	ENSGT00940000163302	ENSGT00940000162891.b.b.a.b	ENSGT00940000154475	ENSGT00940000162891.a	ENSGT00390000006227	ENSGT00390000002849	ENSGT00530000063725.i.b #22	ENSGT00940000158452	ENSGT00940000161338	ENSGT00940000159238.a	ENSGT00550000076481	ENSGT00940000155044.A	ENSGT00940000153744.B	ENSGT00530000063540.b	ENSGT00390000003680.a	ENSGT00950000182991.C.b	ENSGT00940000157645.b.a.a	ENSGT00940000166697.b.c	ENSGT00940000157645.a.b	ENSGT00390000006103	ENSGT00940000160962.m	ENSGT01050000244815.A.c.a.a.a.s.a
Common wall lizard	DUPLICATION
Common wall lizard	DUPLICATION
Common wall lizard	MODERN SPECIES	4	ENSPMRG00000012887	ENSPMRG00000012880	ENSPMRG00000012877	ENSPMRG00000012872	ENSPMRG00000012870	ENSPMRG00000012865	ENSPMRG00000012852	ENSPMRG00000012847	ENSPMRG00000012844	ENSPMRG00000012843	ENSPMRG00000012837	ENSPMRG00000012833	TTC5 (ENSPMRG00000012829)	CCNB1IP1 (ENSPMRG00000012826)	ENSPMRG00000012813 #22	ENSPMRG00000012812 #22	ENSPMRG00000012796 #22	PARP2 (ENSPMRG00000012782)	TEP1 (ENSPMRG00000012763)	ENSPMRG00000012754	ENSPMRG00000012753	ENSPMRG00000012747	ENSPMRG00000012552	OSGEP (ENSPMRG00000012516)	APEX1 (ENSPMRG00000012510)	PIP4P1 (ENSPMRG00000012508)	ENSPMRG00000012503	ENSPMRG00000012501	ENSPMRG00000012493	ENSPMRG00000012487	ENSPMRG00000012462
Common wall lizard	MODERN SPECIES	4	ENSPMRG00000012893	ENSPMRG00000012887	ENSPMRG00000012880	ENSPMRG00000012877	ENSPMRG00000012872	ENSPMRG00000012870	ENSPMRG00000012865	ENSPMRG00000012852	ENSPMRG00000012847	ENSPMRG00000012844	ENSPMRG00000012843	ENSPMRG00000012837	ENSPMRG00000012833	TTC5 (ENSPMRG00000012829)	CCNB1IP1 (ENSPMRG00000012826)	ENSPMRG00000012813 #22	ENSPMRG00000012812 #22	ENSPMRG00000012796 #22	PARP2 (ENSPMRG00000012782)	TEP1 (ENSPMRG00000012763)	ENSPMRG00000012754	ENSPMRG00000012753	ENSPMRG00000012747	ENSPMRG00000012552	OSGEP (ENSPMRG00000012516)	APEX1 (ENSPMRG00000012510)	PIP4P1 (ENSPMRG00000012508)	ENSPMRG00000012503	ENSPMRG00000012501	ENSPMRG00000012493	ENSPMRG00000012487
Common wall lizard	MODERN SPECIES	4	ENSPMRG00000012880	ENSPMRG00000012877	ENSPMRG00000012872	ENSPMRG00000012870	ENSPMRG00000012865	ENSPMRG00000012852	ENSPMRG00000012847	ENSPMRG00000012844	ENSPMRG00000012843	ENSPMRG00000012837	ENSPMRG00000012833	TTC5 (ENSPMRG00000012829)	CCNB1IP1 (ENSPMRG00000012826)	ENSPMRG00000012813 #22	ENSPMRG00000012812 #22	ENSPMRG00000012796 #22	PARP2 (ENSPMRG00000012782)	TEP1 (ENSPMRG00000012763)	ENSPMRG00000012754	ENSPMRG00000012753	ENSPMRG00000012747	ENSPMRG00000012552	OSGEP (ENSPMRG00000012516)	APEX1 (ENSPMRG00000012510)	PIP4P1 (ENSPMRG00000012508)	ENSPMRG00000012503	ENSPMRG00000012501	ENSPMRG00000012493	ENSPMRG00000012487	ENSPMRG00000012462	ENSPMRG00000012455
Toxicofera	ANCESTRAL SPECIES	13	ENSGT00940000161519	ENSGT00390000000337	ENSGT00390000006970	ENSGT00940000160238	ENSGT00390000012563	ENSGT00410000025793.a	ENSGT01030000234574.A.b.b	ENSGT00940000163142.a.a.c.a.a	ENSGT00940000163142.b	ENSGT00940000165513.a	ENSGT00940000163302	ENSGT00940000162891.b.b.a.a.b	ENSGT00940000163605	ENSGT00390000006227	ENSGT00390000002849	ENSGT00530000063725.i.b #22	ENSGT00940000158452	ENSGT00940000161338	ENSGT00940000167043	ENSGT00940000159238.a	ENSGT00550000076481	ENSGT00940000155044.A	ENSGT00940000153744.B	ENSGT00530000063540.b	ENSGT00390000003680.a	ENSGT00950000182991.C	ENSGT00940000157645.b.a.a.c	ENSGT00940000166697.b	ENSGT00940000157645.a.b	ENSGT00390000006103	ENSGT00940000160962.m
Elapidae	ANCESTRAL SPECIES	16	ENSGT00940000160238	ENSGT00390000012563	ENSGT00410000025793.a	ENSGT01030000234574.A.b.b	ENSGT00940000163142.a.a.c.a.a	ENSGT00940000162669	ENSGT00940000162873	ENSGT00940000163142.b	ENSGT00940000165513.a.e.a.a.b	ENSGT00940000163302	ENSGT00940000154475	ENSGT00940000162891.b.b.b	ENSGT00940000162891.a	ENSGT00390000006227	ENSGT00390000002849	ENSGT00530000063725.i.b #22	ENSGT00940000158452	ENSGT00940000161338	ENSGT00940000167043	ENSGT00940000159238.a	ENSGT00550000076481	ENSGT00940000155044.A	ENSGT00940000153744.B	ENSGT00530000063540.b	ENSGT00390000003680.a	ENSGT00950000182991.C	ENSGT00940000157645.b.a.a.c	ENSGT00940000157645.a.a.b.j.b	ENSGT00940000157645.a.a.b.i.a	ENSGT00940000157645.a.a.b.i.b	ENSGT00940000157645.a.b
Elapidae_a	ANCESTRAL SPECIES	111							ENSGT00940000163142.b	ENSGT00940000165513.a.e.a.a.b	ENSGT00940000163302	ENSGT00940000162891.b.b.a.a.b	ENSGT00940000163605	ENSGT00940000162891.b.b.b	ENSGT00940000162891.a	ENSGT00390000006227	ENSGT00390000002849	ENSGT00530000063725.i.b #22	ENSGT00940000158452	ENSGT00940000161338	ENSGT00940000167043	ENSGT00940000159238.a	ENSGT00550000076481	ENSGT00940000155044.A	ENSGT00940000153744.B	ENSGT00530000063540.b	ENSGT00390000003680.a	ENSGT00950000182991.C	ENSGT00940000157645.b.a.a.c	ENSGT00940000157645.a.a.b.j.b	ENSGT00940000157645.a.a.b.i.a	ENSGT00940000157645.a.a.b.i.b	ENSGT00940000166697.a
Acanthophiinae	ANCESTRAL SPECIES	94				ENSGT00940000163142.a.a.c.b.f	ENSGT00940000163142.b	ENSGT00940000165513.a.e.a.a.b	ENSGT00940000163302	ENSGT00940000165513.a.e.a.b	ENSGT00940000165513.a.e.a.a.a.a	ENSGT00940000162891.b.b.a.a.b	ENSGT00940000163605	ENSGT00940000162891.b.b.b	ENSGT00940000162891.a	ENSGT00390000006227	ENSGT00390000002849	ENSGT00530000063725.i.b #22	ENSGT00940000158452	ENSGT00940000161338	ENSGT00940000167043	ENSGT00940000159238.a	ENSGT00550000076481	ENSGT00940000155044.A	ENSGT00940000153744.B	ENSGT00530000063540.b	ENSGT00390000003680.a	ENSGT00950000182991.C	ENSGT00940000157645.b.a.a.c	ENSGT00940000157645.a.a.b.j.b	ENSGT00940000157645.a.a.b.i.a	ENSGT00940000157645.a.a.b.i.b	ENSGT00940000166697.a
Mainland tiger snake	MODERN SPECIES	346																ENSNSUG00000002099 #22	PARP2 (ENSNSUG00000002107)	ENSNSUG00000002402	ENSNSUG00000002409	ENSNSUG00000002418	ENSNSUG00000002421	ENSNSUG00000002423	OSGEP (ENSNSUG00000002430)	APEX1 (ENSNSUG00000002486)	PIP4P1 (ENSNSUG00000002487)	ENSNSUG00000002501	ENSNSUG00000002502
Eastern brown snake	MODERN SPECIES	142						ENSPTXG00000015530	OR4D10 (ENSPTXG00000015532)	ENSPTXG00000015533	ENSPTXG00000015535	ENSPTXG00000015537	ENSPTXG00000015538	ENSPTXG00000015541	ENSPTXG00000015542	TTC5 (ENSPTXG00000015544)	CCNB1IP1 (ENSPTXG00000015546)	ENSPTXG00000015548 #22	PARP2 (ENSPTXG00000015553)	ENSPTXG00000015559	ENSPTXG00000015561	ENSPTXG00000015562	ENSPTXG00000015563	ENSPTXG00000015566	OSGEP (ENSPTXG00000016696)	APEX1 (ENSPTXG00000016697)	PIP4P1 (ENSPTXG00000016700)	ENSPTXG00000016702	ENSPTXG00000016705	ENSPTXG00000016707	ENSPTXG00000016710	ENSPTXG00000016714	ENSPTXG00000016716
Blue-lipped sea krait	MODERN SPECIES	6835																ENSLLTG00000011519 #22	PARP2 (ENSLLTG00000011552)
Indian cobra	MODERN SPECIES	337	OR4K1 (ENSNNAG00000009519)	ENSNNAG00000009509	OR4Q2 (ENSNNAG00000009499)	ENSNNAG00000009483	ENSNNAG00000009478	ENSNNAG00000009466	ENSNNAG00000009443	ENSNNAG00000009387	ENSNNAG00000009360	ENSNNAG00000009348	ENSNNAG00000009332	ENSNNAG00000009317	ENSNNAG00000009306	TTC5 (ENSNNAG00000009001)	CCNB1IP1 (ENSNNAG00000008973)	ENSNNAG00000008962 #22	PARP2 (ENSNNAG00000008803)	ENSNNAG00000008757	ENSNNAG00000008674	ENSNNAG00000008626	ENSNNAG00000008619	ENSNNAG00000008561	ENSNNAG00000008541	ENSNNAG00000008517	ENSNNAG00000008495	ENSNNAG00000008482	ENSNNAG00000008456	ENSNNAG00000008431	ENSNNAG00000008421	ENSNNAG00000008398	ENSNNAG00000008387
Lizard	MODERN SPECIES	834	ENSACAG00000009077	EMC4 (ENSACAG00000009050)	SLC12A6 (ENSACAG00000008808)	NOP10 (ENSACAG00000039484)	ENSACAG00000008786	LPCAT4 (ENSACAG00000008720)	ENSACAG00000025829	ENSACAG00000024442	ENSACAG00000008714	ENSACAG00000008699	ENSACAG00000039317	ENSACAG00000042314	ENSACAG00000008636	ENSACAG00000008395	CCNB1IP1 (ENSACAG00000008387)	ENSACAG00000008358 #22	PARP2 (ENSACAG00000008301)	TEP1 (ENSACAG00000008296)	ENSACAG00000027766	ENSACAG00000008135	OSGEP (ENSACAG00000008105)	APEX1 (ENSACAG00000035888)	PIP4P1 (ENSACAG00000041769)	ENSACAG00000008033	ENSACAG00000025388	ENSACAG00000008003	ENSACAG00000039781	ENSACAG00000029001	ENSACAG00000028256	ENSACAG00000028723	ENSACAG00000007927
Sauria	ANCESTRAL SPECIES	69		ENSGT00940000162126	ENSGT00940000157978	ENSGT00940000159427	ENSGT00940000154762.a.a	ENSGT00940000161127	ENSGT00390000018316.a	ENSGT00940000162015.a.a	ENSGT00940000162015.a.b	ENSGT00940000154615	ENSGT00940000160215	ENSGT01030000234576.D.a.b.b	ENSGT00940000160236	ENSGT01030000234627.a.a.d	ENSGT01030000234627.a.b.b	ENSGT00530000063725.j #22	ENSGT00940000157421	ENSGT01030000234646.A	ENSGT01100000263552.h.b.s.b.a	ENSGT00940000159512	ENSGT00940000154999.A.h	ENSGT00940000157290	ENSGT00940000160912	ENSGT00940000154390.A.j.c.b	ENSGT00950000185058
Archelosauria	ANCESTRAL SPECIES	42		ENSGT00940000162126	ENSGT00940000157978	ENSGT00940000159427	ENSGT00940000154762.a.a	ENSGT00940000161127	ENSGT00390000018316.a	ENSGT00940000162015.a.a	ENSGT00940000162015.a.b	ENSGT00940000154615	ENSGT00940000160215	ENSGT01030000234576.D.a.b.b	ENSGT00940000160236	ENSGT01030000234627.a.a.d	ENSGT01030000234627.a.b.b	ENSGT00530000063725.j #22	ENSGT00940000157421	ENSGT01030000234646.A	ENSGT01100000263552.h.b.s.b.a	ENSGT00940000159512	ENSGT00940000154999.A.h	ENSGT00940000157290	ENSGT00940000160912	ENSGT00940000154390.A.j.c.b	ENSGT00950000185058	ENSGT00940000160447	ENSGT00390000009109	ENSGT00940000164039.c	ENSGT00940000160533	ENSGT00390000000050	ENSGT00390000002866.a
Archosauria	ANCESTRAL SPECIES	137														ENSGT01030000234627.a.a.d	ENSGT01030000234627.a.b.b	ENSGT00530000063725.j #22
Aves	ANCESTRAL SPECIES	135														ENSGT01030000234627.a.a.d	ENSGT01030000234627.a.b.b	ENSGT00530000063725.j #22
Neognathae	ANCESTRAL SPECIES	110														ENSGT01030000234627.a.a.d	ENSGT01030000234627.a.b.b	ENSGT00530000063725.j #22
Neognathae_b	ANCESTRAL SPECIES	98														ENSGT01030000234627.a.a.d	ENSGT01030000234627.a.b.b	ENSGT00530000063725.j #22
Passeriformes	ANCESTRAL SPECIES	235															ENSGT01030000234627.a.b.b	ENSGT00530000063725.j #22
Passeriformes_d	ANCESTRAL SPECIES	240															ENSGT01030000234627.a.b.b	ENSGT00530000063725.j #22
Passeriformes_g	ANCESTRAL SPECIES	229															ENSGT01030000234627.a.b.b	ENSGT00530000063725.j #22
Passeroidea	ANCESTRAL SPECIES	234															ENSGT01030000234627.a.b.b	ENSGT00530000063725.j #22
Zebra finch	MODERN SPECIES	79											ENSTGUG00000027121	ENSTGUG00000024695	ENSTGUG00000023206	ENSTGUG00000023916	ENSTGUG00000025404	ENSTGUG00000029466 #22	ENSTGUG00000028910	ENSTGUG00000024791	ENSTGUG00000029554	ENSTGUG00000027065	ENSTGUG00000024086
Galloanserae	ANCESTRAL SPECIES																	ENSGT00530000063725.j #22
Anatidae	ANCESTRAL SPECIES																	ENSGT00530000063725.j #22
Pink-footed goose	MODERN SPECIES	770																PRF1 (ENSABRG00000005220) #22
Duck	MODERN SPECIES	3123																ENSAPLG00000028892 #22
Phasianidae	ANCESTRAL SPECIES	20																ENSGT00530000063725.j #22	ENSGT00940000154323.a	ENSGT00960000189446	ENSGT00940000163282.i.a	ENSGT00940000164721	ENSGT00940000159838	ENSGT00940000166451	ENSGT00940000155422	ENSGT00940000153464.A.a	ENSGT00390000008072	ENSGT01100000263542.B.b.g	ENSGT00940000153116.D	ENSGT01070000255926	ENSGT00940000161243	ENSGT00940000158560	ENSGT00940000161618
Japanese quail	MODERN SPECIES	8																ENSCJPG00005015768 #22	ENSCJPG00005015769	ENSCJPG00005015770	DPP7 (ENSCJPG00005015771)	MAN1B1 (ENSCJPG00005015772)	UAP1L1 (ENSCJPG00005015776)	SAPCD2 (ENSCJPG00005015777)	ENTPD2 (ENSCJPG00005015778)	TMEM141 (ENSCJPG00005015779)	CLIC3 (ENSCJPG00005015781)	ABCA2 (ENSCJPG00005015782)	FUT7 (ENSCJPG00005015784)	ENSCJPG00005015786	NPDC1 (ENSCJPG00005015789)	ENSCJPG00005015796	ENSCJPG00005015798
Phasianidae_b	ANCESTRAL SPECIES	19																ENSGT00530000063725.j #22	ENSGT00940000154323.a	ENSGT00460000041630	ENSGT00960000189446	ENSGT00940000163282.i.a	ENSGT00940000164721	ENSGT00940000159838	ENSGT00940000166451	ENSGT00940000155422	ENSGT00940000153464.A.a	ENSGT00390000008072	ENSGT01100000263542.B.b.g	ENSGT00940000153116.D	ENSGT01070000255926	ENSGT00940000161243	ENSGT00940000158560
Turkey	MODERN SPECIES	10												ENSMGAG00000018270	ENSMGAG00000000752	ENSMGAG00000019359	ENSMGAG00000017670	ENSMGAG00000000912 #22	ENSMGAG00000000923	ENSMGAG00000000743	ENSMGAG00000020344	ENSMGAG00000000784	ENSMGAG00000000824	DPP7 (ENSMGAG00000000894)	ENSMGAG00000000920	MAN1B1 (ENSMGAG00000000931)	UAP1L1 (ENSMGAG00000000988)	SAPCD2 (ENSMGAG00000001034)	ENTPD2 (ENSMGAG00000001070)	ENSMGAG00000017767	ENSMGAG00000001100	ENSMGAG00000001109	ENSMGAG00000001168
Chicken	MODERN SPECIES	8										COLGALT1 (ENSGALG00010028905)	ENSGALG00010028906	ENSGALG00010028926	ENSGALG00010028927	ENSGALG00010028907	ENSGALG00010028908	PRF1 (ENSGALG00010028016) #22	ENSGALG00010028020	ANKMY1 (ENSGALG00010028026)	ENSGALG00010028033	ENSGALG00010028037	DPP7 (ENSGALG00010028042)	ENSGALG00010028045	MAN1B1 (ENSGALG00010028049)	UAP1L1 (ENSGALG00010027789)	SAPCD2 (ENSGALG00010027803)	ENTPD2 (ENSGALG00010027982)	TMEM141 (ENSGALG00010027987)	ENSGALG00010027989	CLIC3 (ENSGALG00010027993)	ABCA2 (ENSGALG00010028002)	CFTII (ENSGALG00010027375)
Anura	DUPLICATION
Anura	ANCESTRAL SPECIES	260							ENSGT00510000048856.B	ENSGT00940000162122	ENSGT01030000234646.A	ENSGT00940000159512	ENSGT00940000154999.A	ENSGT00940000161761	ENSGT00940000157290	ENSGT00940000154390.A.i.b.b	ENSGT00940000154390.A.i.a.a.a	ENSGT00530000063725.k #22	ENSGT00530000063725.l #22
Leishan spiny toad	DUPLICATION
Leishan spiny toad	MODERN SPECIES	10	ENSLLEG00000023229	ENSLLEG00000023173	FUS (ENSLLEG00000022691)	ENSLLEG00000022628	ENSLLEG00000022582	ENSLLEG00000022519	ENSLLEG00000022486	ENSLLEG00000022463	ENSLLEG00000022377	ENSLLEG00000022360	ENSLLEG00000022274	ENSLLEG00000022245	ENSLLEG00000022150	ENSLLEG00000022120	ENSLLEG00000022072	ENSLLEG00000021967 #22	ENSLLEG00000021913 #22	ENSLLEG00000021872	ENSLLEG00000021828	ENSLLEG00000021811	PPIL3 (ENSLLEG00000021745)	NIF3L1 (ENSLLEG00000021674)	PFAS (ENSLLEG00000021434)	ENSLLEG00000021295	ENSLLEG00000021158	ENSLLEG00000021033	ENSLLEG00000021002	ENSLLEG00000020798	ENSLLEG00000020699	ENSLLEG00000020648	ENSLLEG00000020586
Leishan spiny toad	MODERN SPECIES	851																ENSLLEG00000017516 #22
Frog	MODERN SPECIES	9	prss8 (ENSXETG00000027998)	fus (ENSXETG00000001951)	ENSXETG00000043589	ENSXETG00000040597	ENSXETG00000049018	ENSXETG00000035514	ENSXETG00000043804	ENSXETG00000045153	ENSXETG00000044435	ENSXETG00000046995	urgcp (ENSXETG00000034632)	ENSXETG00000048639	ENSXETG00000015501	ENSXETG00000041922	ENSXETG00000038253	ENSXETG00000043629 #22	ENSXETG00000026274 #22	ENSXETG00000015481 #22	prf1 (ENSXETG00000030775) #22	ENSXETG00000007068 #22	ENSXETG00000036418 #22	ENSXETG00000045429	ENSXETG00000037179 #22	ENSXETG00000042685	ENSXETG00000039274	ENSXETG00000036907	ENSXETG00000042972	ENSXETG00000042469	ENSXETG00000042484	ENSXETG00000034453	ENSXETG00000048664
Anura	ANCESTRAL SPECIES	260																ENSGT00530000063725.l #22	ENSGT00530000063725.k #22	ENSGT00940000154390.A.i.a.a.a	ENSGT00940000154390.A.i.b.b	ENSGT00940000157290	ENSGT00940000161761	ENSGT00940000154999.A	ENSGT00940000159512	ENSGT01030000234646.A	ENSGT00940000162122	ENSGT00510000048856.B
Frog	DUPLICATION
Frog	DUPLICATION
Frog	DUPLICATION
Frog	MODERN SPECIES	9	MGC147490 (ENSXETG00000007044)	mapk7 (ENSXETG00000006274)	vkorc1 (ENSXETG00000035966)	ENSXETG00000048664	ENSXETG00000034453	ENSXETG00000042484	ENSXETG00000042469	ENSXETG00000042972	ENSXETG00000036907	ENSXETG00000039274	ENSXETG00000042685	ENSXETG00000037179 #22	ENSXETG00000045429	ENSXETG00000036418 #22	ENSXETG00000007068 #22	prf1 (ENSXETG00000030775) #22	ENSXETG00000015481 #22	ENSXETG00000026274 #22	ENSXETG00000043629 #22	ENSXETG00000038253	ENSXETG00000041922	ENSXETG00000015501	ENSXETG00000048639	urgcp (ENSXETG00000034632)	ENSXETG00000046995	ENSXETG00000044435	ENSXETG00000045153	ENSXETG00000043804	ENSXETG00000035514	ENSXETG00000049018	ENSXETG00000040597
Frog	MODERN SPECIES	9	XB5913531 [provisional:mfap4] (ENSXETG00000042948)	MGC147490 (ENSXETG00000007044)	mapk7 (ENSXETG00000006274)	vkorc1 (ENSXETG00000035966)	ENSXETG00000048664	ENSXETG00000034453	ENSXETG00000042484	ENSXETG00000042469	ENSXETG00000042972	ENSXETG00000036907	ENSXETG00000039274	ENSXETG00000042685	ENSXETG00000037179 #22	ENSXETG00000045429	ENSXETG00000036418 #22	ENSXETG00000007068 #22	prf1 (ENSXETG00000030775) #22	ENSXETG00000015481 #22	ENSXETG00000026274 #22	ENSXETG00000043629 #22	ENSXETG00000038253	ENSXETG00000041922	ENSXETG00000015501	ENSXETG00000048639	urgcp (ENSXETG00000034632)	ENSXETG00000046995	ENSXETG00000044435	ENSXETG00000045153	ENSXETG00000043804	ENSXETG00000035514	ENSXETG00000049018
Frog	DUPLICATION
Frog	MODERN SPECIES	9	ENSXETG00000045153	ENSXETG00000044435	ENSXETG00000046995	urgcp (ENSXETG00000034632)	ENSXETG00000048639	ENSXETG00000015501	ENSXETG00000041922	ENSXETG00000038253	ENSXETG00000043629 #22	ENSXETG00000026274 #22	ENSXETG00000015481 #22	prf1 (ENSXETG00000030775) #22	ENSXETG00000007068 #22	ENSXETG00000036418 #22	ENSXETG00000045429	ENSXETG00000037179 #22	ENSXETG00000042685	ENSXETG00000039274	ENSXETG00000036907	ENSXETG00000042972	ENSXETG00000042469	ENSXETG00000042484	ENSXETG00000034453	ENSXETG00000048664	vkorc1 (ENSXETG00000035966)	mapk7 (ENSXETG00000006274)	MGC147490 (ENSXETG00000007044)	XB5913531 [provisional:mfap4] (ENSXETG00000042948)	ENSXETG00000006277	mfap4.2 (ENSXETG00000024469)	rnf112 (ENSXETG00000006278)
Frog	MODERN SPECIES	9	ENSXETG00000006277	XB5913531 [provisional:mfap4] (ENSXETG00000042948)	MGC147490 (ENSXETG00000007044)	mapk7 (ENSXETG00000006274)	vkorc1 (ENSXETG00000035966)	ENSXETG00000048664	ENSXETG00000034453	ENSXETG00000042484	ENSXETG00000042469	ENSXETG00000042972	ENSXETG00000036907	ENSXETG00000039274	ENSXETG00000042685	ENSXETG00000037179 #22	ENSXETG00000045429	ENSXETG00000036418 #22	ENSXETG00000007068 #22	prf1 (ENSXETG00000030775) #22	ENSXETG00000015481 #22	ENSXETG00000026274 #22	ENSXETG00000043629 #22	ENSXETG00000038253	ENSXETG00000041922	ENSXETG00000015501	ENSXETG00000048639	urgcp (ENSXETG00000034632)	ENSXETG00000046995	ENSXETG00000044435	ENSXETG00000045153	ENSXETG00000043804	ENSXETG00000035514
Frog	DUPLICATION
Frog	MODERN SPECIES	9	mapk7 (ENSXETG00000006274)	vkorc1 (ENSXETG00000035966)	ENSXETG00000048664	ENSXETG00000034453	ENSXETG00000042484	ENSXETG00000042469	ENSXETG00000042972	ENSXETG00000036907	ENSXETG00000039274	ENSXETG00000042685	ENSXETG00000037179 #22	ENSXETG00000045429	ENSXETG00000036418 #22	ENSXETG00000007068 #22	prf1 (ENSXETG00000030775) #22	ENSXETG00000015481 #22	ENSXETG00000026274 #22	ENSXETG00000043629 #22	ENSXETG00000038253	ENSXETG00000041922	ENSXETG00000015501	ENSXETG00000048639	urgcp (ENSXETG00000034632)	ENSXETG00000046995	ENSXETG00000044435	ENSXETG00000045153	ENSXETG00000043804	ENSXETG00000035514	ENSXETG00000049018	ENSXETG00000040597	ENSXETG00000043589
Frog	MODERN SPECIES	9	vkorc1 (ENSXETG00000035966)	ENSXETG00000048664	ENSXETG00000034453	ENSXETG00000042484	ENSXETG00000042469	ENSXETG00000042972	ENSXETG00000036907	ENSXETG00000039274	ENSXETG00000042685	ENSXETG00000037179 #22	ENSXETG00000045429	ENSXETG00000036418 #22	ENSXETG00000007068 #22	prf1 (ENSXETG00000030775) #22	ENSXETG00000015481 #22	ENSXETG00000026274 #22	ENSXETG00000043629 #22	ENSXETG00000038253	ENSXETG00000041922	ENSXETG00000015501	ENSXETG00000048639	urgcp (ENSXETG00000034632)	ENSXETG00000046995	ENSXETG00000044435	ENSXETG00000045153	ENSXETG00000043804	ENSXETG00000035514	ENSXETG00000049018	ENSXETG00000040597	ENSXETG00000043589	fus (ENSXETG00000001951)
Leishan spiny toad	MODERN SPECIES	10	ENSLLEG00000020411	ENSLLEG00000020586	ENSLLEG00000020648	ENSLLEG00000020699	ENSLLEG00000020798	ENSLLEG00000021002	ENSLLEG00000021033	ENSLLEG00000021158	ENSLLEG00000021295	PFAS (ENSLLEG00000021434)	NIF3L1 (ENSLLEG00000021674)	PPIL3 (ENSLLEG00000021745)	ENSLLEG00000021811	ENSLLEG00000021828	ENSLLEG00000021872	ENSLLEG00000021913 #22	ENSLLEG00000021967 #22	ENSLLEG00000022072	ENSLLEG00000022120	ENSLLEG00000022150	ENSLLEG00000022245	ENSLLEG00000022274	ENSLLEG00000022360	ENSLLEG00000022377	ENSLLEG00000022463	ENSLLEG00000022486	ENSLLEG00000022519	ENSLLEG00000022582	ENSLLEG00000022628	FUS (ENSLLEG00000022691)	ENSLLEG00000023173
Coelacanth	DUPLICATION
Coelacanth	MODERN SPECIES	1792												ENSLACG00000008367	ENSLACG00000007541	ENSLACG00000007301	ENSLACG00000006672	ENSLACG00000005467 #22	ENSLACG00000005133	ENSLACG00000004661	ENSLACG00000004408	ENSLACG00000003627
Coelacanth	DUPLICATION
Coelacanth	DUPLICATION
Coelacanth	MODERN SPECIES	2990													STX1B (ENSLACG00000004174)	ENSLACG00000002688	ENSLACG00000001946 #22	ENSLACG00000001566 #22	ENSLACG00000022195 #22
Coelacanth	MODERN SPECIES	2990														ENSLACG00000022195 #22	ENSLACG00000001566 #22	ENSLACG00000001946 #22	ENSLACG00000002688	STX1B (ENSLACG00000004174)
Coelacanth	DUPLICATION
Coelacanth	DUPLICATION
Coelacanth	MODERN SPECIES	4115																ENSLACG00000000632 #22
Coelacanth	MODERN SPECIES	4092																ENSLACG00000000635 #22
Coelacanth	MODERN SPECIES	2990																ENSLACG00000022195 #22	ENSLACG00000001566 #22	ENSLACG00000001946 #22	ENSLACG00000002688	STX1B (ENSLACG00000004174)
Actinopterygii	DUPLICATION
Actinopterygii	ANCESTRAL SPECIES	812															ENSGT00990000203866	ENSGT00530000063725.o #22	ENSGT00940000154390.A
Neopterygii	ANCESTRAL SPECIES	470													ENSGT01030000234592.A.b.b.a.b.a.a	ENSGT01030000234592.A.b.b.a.b.b	ENSGT01030000234592.A.b.b.a.a	ENSGT00530000063725.o #22	ENSGT00990000203866
Osteoglossocephalai	ANCESTRAL SPECIES	167	ENSGT01030000234590.B.a.b	ENSGT00940000163776.a	ENSGT00940000160414.c	ENSGT00940000157623	ENSGT00940000167281	ENSGT00940000160323.a.a	ENSGT00390000010169	ENSGT00940000159845	ENSGT00390000017226	ENSGT01030000234592.A.b.b.a.b.a.b	ENSGT00510000048483	ENSGT00940000162936	ENSGT01030000234592.A.b.b.a.b.a.a	ENSGT01030000234592.A.b.b.a.b.b.a	ENSGT01030000234592.A.b.b.a.a	ENSGT00530000063725.o #22	ENSGT00730000111394	ENSGT00940000156361.A.a	ENSGT00940000164158.A.a	ENSGT00950000182920.b.a.b.a.b	ENSGT00940000160598	ENSGT00390000000334	ENSGT01050000244976.b.b.b.a.b	ENSGT00940000158058.a	ENSGT00940000158661.a	ENSGT00940000158661.b	ENSGT00940000166258	ENSGT00940000163701.a	ENSGT00950000183136.b.a.b	ENSGT00940000162009.a	ENSGT00950000183189.a.a
Osteoglossiformes	ANCESTRAL SPECIES	151	ENSGT00940000166804	ENSGT00940000176904	ENSGT01030000234590.B.a.b	ENSGT00940000163776.a	ENSGT00940000160414.c	ENSGT00940000157623	ENSGT00940000167281	ENSGT00940000160323.a.a.a	ENSGT00390000010169	ENSGT00940000159845.d	ENSGT00390000017226.b	ENSGT00940000162936	ENSGT01030000234592.A.b.b.a.b.a.a	ENSGT01030000234592.A.b.b.a.b.b.a	ENSGT01030000234592.A.b.b.a.a	ENSGT00530000063725.o #22	ENSGT00940000160598	ENSGT00390000000334	ENSGT01050000244976.b.b.b.a.b	ENSGT00940000158058.a	ENSGT00940000158661.a	ENSGT00940000158661.b	ENSGT00940000166258	ENSGT00940000163701.a.b	ENSGT00940000163701.b.a.a.b	ENSGT00950000183136.b.a.b	ENSGT00940000162009.a	ENSGT00950000183189.a.a	ENSGT00940000154589.b	ENSGT00940000159753
Asian bonytongue	DUPLICATION
Asian bonytongue	MODERN SPECIES	15	ENSSFOG00015024253	mturn (ENSSFOG00015029398)	SH3BP5 (ENSSFOG00015009163)	ENSSFOG00015008825	ENSSFOG00015009181	ENSSFOG00015009209	ENSSFOG00015009229	ENSSFOG00015009300	thbs3b (ENSSFOG00015009327)	txnipa (ENSSFOG00015009446)	gatad2b (ENSSFOG00015009475)	ENSSFOG00015009522	si:dkey-6i22.5 (ENSSFOG00015009591)	ENSSFOG00015009608	CHST1 (ENSSFOG00015009626)	prf1.2 (ENSSFOG00015009645) #22	thap7 (ENSSFOG00015009659)	ENSSFOG00015009669	ENSSFOG00015009697	syt11a (ENSSFOG00015009728)	ENSSFOG00015009748	snapin (ENSSFOG00015009801)	chtopa (ENSSFOG00015027380)	ENSSFOG00015009872	cgnb (ENSSFOG00015009923)	pygo2 (ENSSFOG00015009947)	CHRNB2 (ENSSFOG00015009958)	s100s (ENSSFOG00015024558)	ENSSFOG00015010003	lenep (ENSSFOG00015010016)	cks1b (ENSSFOG00015010027)
Asian bonytongue	DUPLICATION
Asian bonytongue	MODERN SPECIES	4	ENSSFOG00015029204	ENSSFOG00015030855	KDM6B (ENSSFOG00015015793)	DNAH2 (ENSSFOG00015015843)	serpinh2 (ENSSFOG00015028928)	efnb3b (ENSSFOG00015032773)	wrap53 (ENSSFOG00015015993)	GIGYF1 (ENSSFOG00015016038)	ENSSFOG00015016065	ufsp1 (ENSSFOG00015016077)	ENSSFOG00015027110	ENSSFOG00015016099	ENSSFOG00015016111	ENSSFOG00015016119	PRF1 (ENSSFOG00015016176) #22	PRF1 (ENSSFOG00015016402) #22	nlgn2a (ENSSFOG00015016415)	tmem256 (ENSSFOG00015027903)	tmem102 (ENSSFOG00015016463)	fgf11a (ENSSFOG00015007313)	chrnb1 (ENSSFOG00015016479)	chrnb1l (ENSSFOG00015016514)	cldn7a (ENSSFOG00015029128)	ENSSFOG00015033300	ENSSFOG00015016566	ENSSFOG00015016578	ENSSFOG00015030859	PTGDR2 (ENSSFOG00015016604)	fxr2 (ENSSFOG00015016623)	ENSSFOG00015026492	ALPK1 (ENSSFOG00015016743)
Asian bonytongue	MODERN SPECIES	4	tmem88b (ENSSFOG00015018662)	ENSSFOG00015029204	ENSSFOG00015030855	KDM6B (ENSSFOG00015015793)	DNAH2 (ENSSFOG00015015843)	serpinh2 (ENSSFOG00015028928)	efnb3b (ENSSFOG00015032773)	wrap53 (ENSSFOG00015015993)	GIGYF1 (ENSSFOG00015016038)	ENSSFOG00015016065	ufsp1 (ENSSFOG00015016077)	ENSSFOG00015027110	ENSSFOG00015016099	ENSSFOG00015016111	ENSSFOG00015016119	PRF1 (ENSSFOG00015016176) #22	PRF1 (ENSSFOG00015016402) #22	nlgn2a (ENSSFOG00015016415)	tmem256 (ENSSFOG00015027903)	tmem102 (ENSSFOG00015016463)	fgf11a (ENSSFOG00015007313)	chrnb1 (ENSSFOG00015016479)	chrnb1l (ENSSFOG00015016514)	cldn7a (ENSSFOG00015029128)	ENSSFOG00015033300	ENSSFOG00015016566	ENSSFOG00015016578	ENSSFOG00015030859	PTGDR2 (ENSSFOG00015016604)	fxr2 (ENSSFOG00015016623)	ENSSFOG00015026492
Asian bonytongue	MODERN SPECIES	23	nupr1b (ENSSFOG00015001239)	DOC2A (ENSSFOG00015001174)	ENSSFOG00015001144	ENSSFOG00015031086	ENSSFOG00015001092	spns1 (ENSSFOG00015001046)	atxn2l (ENSSFOG00015001018)	sh2b1 (ENSSFOG00015001003)	ENSSFOG00015000985	rabep2 (ENSSFOG00015000975)	atp2a1l (ENSSFOG00015000859)	ppp1caa (ENSSFOG00015006388)	cldni (ENSSFOG00015000777)	coro1a (ENSSFOG00015000741)	paqr4a (ENSSFOG00015032833)	ENSSFOG00015000725 #22	ENSSFOG00015000720	cox6a2 (ENSSFOG00015000608)	ENSSFOG00015000553	ENSSFOG00015000516	ELOB (ENSSFOG00015000498)	atp5mf (ENSSFOG00015000480)	bud31 (ENSSFOG00015000452)	pdap1b (ENSSFOG00015027256)	shmt1 (ENSSFOG00015000376)	ENSSFOG00015000307	ENSSFOG00015026285	smcr8a (ENSSFOG00015000301)	TOP3A (ENSSFOG00015000168)	pigq (ENSSFOG00015023727)	eef2kmt (ENSSFOG00015023724)
P. kingsleyae	DUPLICATION
P. kingsleyae	DUPLICATION
P. kingsleyae	MODERN SPECIES	644																PRF1 (ENSPKIG00000006738) #22	ENSPKIG00000006770 #22	ENSPKIG00000006788	thap7 (ENSPKIG00000006821)	ENSPKIG00000006867	ENSPKIG00000006910	syt11b (ENSPKIG00000006924)
P. kingsleyae	MODERN SPECIES	644															PRF1 (ENSPKIG00000006738) #22	ENSPKIG00000006770 #22	ENSPKIG00000006788	thap7 (ENSPKIG00000006821)	ENSPKIG00000006867	ENSPKIG00000006910	syt11b (ENSPKIG00000006924)
P. kingsleyae	DUPLICATION
P. kingsleyae	DUPLICATION
P. kingsleyae	MODERN SPECIES	397																PRF1 (ENSPKIG00000002699) #22	ENSPKIG00000002722 #22	ENSPKIG00000002742 #22	nlgn2a (ENSPKIG00000002770)	ENSPKIG00000002832	tmem102 (ENSPKIG00000002852)	ENSPKIG00000002871	fgf11a (ENSPKIG00000002888)	ENSPKIG00000002911	ENSPKIG00000002922	chrnb1 (ENSPKIG00000002961)
P. kingsleyae	MODERN SPECIES	397														PRF1 (ENSPKIG00000002699) #22	ENSPKIG00000002722 #22	ENSPKIG00000002742 #22	nlgn2a (ENSPKIG00000002770)	ENSPKIG00000002832	tmem102 (ENSPKIG00000002852)	ENSPKIG00000002871	fgf11a (ENSPKIG00000002888)	ENSPKIG00000002911	ENSPKIG00000002922	chrnb1 (ENSPKIG00000002961)
P. kingsleyae	MODERN SPECIES	397															PRF1 (ENSPKIG00000002699) #22	ENSPKIG00000002722 #22	ENSPKIG00000002742 #22	nlgn2a (ENSPKIG00000002770)	ENSPKIG00000002832	tmem102 (ENSPKIG00000002852)	ENSPKIG00000002871	fgf11a (ENSPKIG00000002888)	ENSPKIG00000002911	ENSPKIG00000002922	chrnb1 (ENSPKIG00000002961)
Clupeocephala	ANCESTRAL SPECIES	274													ENSGT00400000025005	ENSGT00940000154870.A.b	ENSGT00940000161854.b	ENSGT00530000063725.o #22	ENSGT00730000111394	ENSGT00940000164158.A.b	ENSGT00390000014273.b	ENSGT00940000160132	ENSGT00940000159088.b	ENSGT00940000164585.c.a.a.b	ENSGT00390000008274	ENSGT00390000002869	ENSGT00940000154879	ENSGT00940000156985.h	ENSGT00390000014184	ENSGT00940000164105.b	ENSGT00940000166438	ENSGT00940000156985.g	ENSGT00940000164105.a
Otomorpha	ANCESTRAL SPECIES	121	ENSGT00930000151196.b	ENSGT00390000004520	ENSGT00940000160092.B	ENSGT00940000160261.g	ENSGT00940000160439	ENSGT00940000161770	ENSGT00950000182973.b.b.c	ENSGT00940000153561.b.a.b.a.a	ENSGT00940000161700	ENSGT00940000164151.a.b	ENSGT00920000149270	ENSGT00940000160628	ENSGT00940000157978.a	ENSGT00990000205603	ENSGT00940000161854.b	ENSGT00530000063725.o #22	ENSGT00940000164067.B	ENSGT00940000154612	ENSGT00390000009109	ENSGT00730000114636	ENSGT00940000154348.c.a.a	ENSGT00390000018316.a.f	ENSGT00940000166194	ENSGT00390000000050	ENSGT00630000091000	ENSGT00520000055626.b	ENSGT00390000012483	ENSGT00940000164923.a.b	ENSGT00940000159038.a.b	ENSGT00940000159805	ENSGT00940000160236
Otophysi	ANCESTRAL SPECIES	277								ENSGT00940000159283.c.a	ENSGT00950000182919.B.a.h	ENSGT00940000158522.m	ENSGT00990000204388	ENSGT00400000025005.a	ENSGT00940000154870.A.b	ENSGT00990000205603	ENSGT00940000161854.b	ENSGT00530000063725.o #22	ENSGT00730000111394	ENSGT00940000156361.A.a	ENSGT00940000164158.A.b	ENSGT00390000014273.b	ENSGT00940000160132	ENSGT00940000159088.b	ENSGT00940000164585.c.a.a.b	ENSGT00390000008274	ENSGT00390000002869	ENSGT00390000004417.a	ENSGT00390000009677	ENSGT00940000154222.d.b
Characiphysae	ANCESTRAL SPECIES	158							ENSGT00940000159283.c.a	ENSGT00950000182919.B.a.h	ENSGT00940000158522.m	ENSGT00990000204388	ENSGT00400000025005.a	ENSGT00940000175914	ENSGT00940000154870.A.b	ENSGT00990000205603.d	ENSGT00940000161854.b	ENSGT00530000063725.o #22	ENSGT00730000111394	ENSGT00940000156361.A.a	ENSGT00940000164158.A.b	ENSGT00390000014273.b	ENSGT00940000160132	ENSGT00940000159088.b	ENSGT00940000164585.c.a.a.b	ENSGT00390000008274	ENSGT00390000002869	ENSGT00390000004417.a	ENSGT00390000009677	ENSGT00940000154222.d.b	ENSGT01090000260093.b.e	ENSGT01090000260093.b.f	ENSGT00950000182978.B
Characiphysae_b	ANCESTRAL SPECIES	157							ENSGT00940000159283.c.a	ENSGT00950000182919.B.a.h	ENSGT00940000158522.m	ENSGT00990000204388	ENSGT00400000025005.a	ENSGT00940000175914	ENSGT00940000154870.A.b	ENSGT00990000205603.d	ENSGT00940000161854.b	ENSGT00530000063725.o #22	ENSGT00730000111394	ENSGT00940000156361.A.a	ENSGT00940000164158.A.b	ENSGT00390000014273.b	ENSGT00940000160132	ENSGT00940000159088.b	ENSGT00940000164585.c.a.a.b	ENSGT00390000008274	ENSGT00390000002869	ENSGT00390000004417.a	ENSGT00390000009677	ENSGT00940000154222.d.b	ENSGT01090000260093.b.e	ENSGT01090000260093.b.f	ENSGT00950000182978.B
Characoidei	ANCESTRAL SPECIES	79						ENSGT00530000063823.b.b.b	ENSGT00550000074694.a.l	ENSGT00940000159283.c.a	ENSGT00950000182919.B.a.h	ENSGT00940000158522.m	ENSGT00990000204388	ENSGT00400000025005.a	ENSGT00940000154870.A.b	ENSGT00990000205603.d	ENSGT00940000161854.b	ENSGT00530000063725.o #22	ENSGT00730000111394	ENSGT00940000156361.A.a	ENSGT00940000164158.A.b	ENSGT00390000014273.b	ENSGT00940000160132	ENSGT00940000159088.b	ENSGT00940000164585.c.a.a.b	ENSGT00390000008274	ENSGT00390000002869	ENSGT00390000004417.a	ENSGT00390000009677	ENSGT00940000154222.d.b	ENSGT01090000260093.b.e	ENSGT01090000260093.b.f	ENSGT00950000182978.B
Red-bellied piranha	DUPLICATION
Red-bellied piranha	DUPLICATION
Red-bellied piranha	DUPLICATION
Red-bellied piranha	DUPLICATION
Red-bellied piranha	MODERN SPECIES	429															ENSPNAG00000016234 #22	ENSPNAG00000016243 #22	thap7 (ENSPNAG00000016248)	ENSPNAG00000016267	zgc:64022 (ENSPNAG00000016283)	pex11b (ENSPNAG00000016305)	rit1 (ENSPNAG00000016317)	syt11a (ENSPNAG00000016348)	ENSPNAG00000016383	smad10a (ENSPNAG00000016416)	snapin (ENSPNAG00000016431)	chtopa (ENSPNAG00000007037)	MATCAP2 (ENSPNAG00000016485)	septin7a (ENSPNAG00000016543)	ENSPNAG00000016568	xkr8.3 (ENSPNAG00000016579)	ENSPNAG00000016588
Red-bellied piranha	MODERN SPECIES	1163													ENSPNAG00000020817	ENSPNAG00000020802 #22	ENSPNAG00000020790 #22	ENSPNAG00000020763 #22
Red-bellied piranha	MODERN SPECIES	2903																ENSPNAG00000027021 #22
Red-bellied piranha	DUPLICATION
Red-bellied piranha	DUPLICATION
Red-bellied piranha	DUPLICATION
Red-bellied piranha	MODERN SPECIES	1163														ENSPNAG00000020817	ENSPNAG00000020802 #22	ENSPNAG00000020790 #22	ENSPNAG00000020763 #22
Red-bellied piranha	MODERN SPECIES	429																ENSPNAG00000016234 #22	ENSPNAG00000016243 #22	thap7 (ENSPNAG00000016248)	ENSPNAG00000016267	zgc:64022 (ENSPNAG00000016283)	pex11b (ENSPNAG00000016305)	rit1 (ENSPNAG00000016317)	syt11a (ENSPNAG00000016348)	ENSPNAG00000016383	smad10a (ENSPNAG00000016416)	snapin (ENSPNAG00000016431)	chtopa (ENSPNAG00000007037)	MATCAP2 (ENSPNAG00000016485)	septin7a (ENSPNAG00000016543)	ENSPNAG00000016568	xkr8.3 (ENSPNAG00000016579)
Red-bellied piranha	DUPLICATION
Red-bellied piranha	DUPLICATION
Red-bellied piranha	MODERN SPECIES	678													pard6gb (ENSPNAG00000003604)	bloc1s4 (ENSPNAG00000019756)	asns (ENSPNAG00000019797)	ENSPNAG00000005185 #22
Red-bellied piranha	MODERN SPECIES	2184																ENSPNAG00000017109 #22
Red-bellied piranha	MODERN SPECIES	1619																ENSPNAG00000010073 #22	ENSPNAG00000010053 #22	ENSPNAG00000009949 #22
Red-bellied piranha	DUPLICATION
Red-bellied piranha	DUPLICATION
Red-bellied piranha	MODERN SPECIES	1163															ENSPNAG00000020817	ENSPNAG00000020802 #22	ENSPNAG00000020790 #22	ENSPNAG00000020763 #22
Red-bellied piranha	MODERN SPECIES	1619														ENSPNAG00000010073 #22	ENSPNAG00000010053 #22	ENSPNAG00000009949 #22
Red-bellied piranha	MODERN SPECIES	1619															ENSPNAG00000010073 #22	ENSPNAG00000010053 #22	ENSPNAG00000009949 #22
Red-bellied piranha	MODERN SPECIES	515													si:dkey-81h8.1 (ENSPNAG00000015276)	ENSPNAG00000015254	s100v2 (ENSPNAG00000015201)	ENSPNAG00000015187 #22	asns (ENSPNAG00000015171)	tac1 (ENSPNAG00000015113)	sdhaf3 (ENSPNAG00000015092)	c1galt1a (ENSPNAG00000015077)	col28a1a (ENSPNAG00000015058)
Mexicana tetra	DUPLICATION
Mexicana tetra	DUPLICATION
Mexicana tetra	MODERN SPECIES	15	ptpn2b (ENSAMXG00000016775)	seh1l (ENSAMXG00000016797)	LDLRAD4 (ENSAMXG00000016814)	fam210aa (ENSAMXG00000016849)	rnmt (ENSAMXG00000040785)	zfpm2b (ENSAMXG00000017011)	thbs3b (ENSAMXG00000017055)	mtx1b (ENSAMXG00000040596)	txnipa (ENSAMXG00000036748)	polr3gla (ENSAMXG00000031351)	ENSAMXG00000017151	ENSAMXG00000017158	ENSAMXG00000027378	s100v2 (ENSAMXG00000039311)	ENSAMXG00000033263 #22	ENSAMXG00000017166 #22	ENSAMXG00000029326 #22	ENSAMXG00000032226 #22	ENSAMXG00000029209 #22	ENSAMXG00000032685 #22	ENSAMXG00000017176 #22	ENSAMXG00000035540 #22	thap7 (ENSAMXG00000035484)	ENSAMXG00000042040	zgc:64022 (ENSAMXG00000039620)	pex11b (ENSAMXG00000041962)	rit1 (ENSAMXG00000036287)	syt11a (ENSAMXG00000017261)	smad10a (ENSAMXG00000017275)	snapin (ENSAMXG00000041247)	chtopa (ENSAMXG00000031344)
Mexicana tetra	MODERN SPECIES	15	snapin (ENSAMXG00000041247)	smad10a (ENSAMXG00000017275)	syt11a (ENSAMXG00000017261)	rit1 (ENSAMXG00000036287)	pex11b (ENSAMXG00000041962)	zgc:64022 (ENSAMXG00000039620)	ENSAMXG00000042040	thap7 (ENSAMXG00000035484)	ENSAMXG00000035540 #22	ENSAMXG00000017176 #22	ENSAMXG00000032685 #22	ENSAMXG00000029209 #22	ENSAMXG00000032226 #22	ENSAMXG00000029326 #22	ENSAMXG00000017166 #22	ENSAMXG00000033263 #22	s100v2 (ENSAMXG00000039311)	ENSAMXG00000027378	ENSAMXG00000017158	ENSAMXG00000017151	polr3gla (ENSAMXG00000031351)	txnipa (ENSAMXG00000036748)	mtx1b (ENSAMXG00000040596)	thbs3b (ENSAMXG00000017055)	zfpm2b (ENSAMXG00000017011)	rnmt (ENSAMXG00000040785)	fam210aa (ENSAMXG00000016849)	LDLRAD4 (ENSAMXG00000016814)	seh1l (ENSAMXG00000016797)	ptpn2b (ENSAMXG00000016775)	psmg2 (ENSAMXG00000030096)
Mexicana tetra	DUPLICATION
Mexicana tetra	DUPLICATION
Mexicana tetra	DUPLICATION
Mexicana tetra	DUPLICATION
Mexicana tetra	MODERN SPECIES	15	zfpm2b (ENSAMXG00000017011)	thbs3b (ENSAMXG00000017055)	mtx1b (ENSAMXG00000040596)	txnipa (ENSAMXG00000036748)	polr3gla (ENSAMXG00000031351)	ENSAMXG00000017151	ENSAMXG00000017158	ENSAMXG00000027378	s100v2 (ENSAMXG00000039311)	ENSAMXG00000033263 #22	ENSAMXG00000017166 #22	ENSAMXG00000029326 #22	ENSAMXG00000032226 #22	ENSAMXG00000029209 #22	ENSAMXG00000032685 #22	ENSAMXG00000017176 #22	ENSAMXG00000035540 #22	thap7 (ENSAMXG00000035484)	ENSAMXG00000042040	zgc:64022 (ENSAMXG00000039620)	pex11b (ENSAMXG00000041962)	rit1 (ENSAMXG00000036287)	syt11a (ENSAMXG00000017261)	smad10a (ENSAMXG00000017275)	snapin (ENSAMXG00000041247)	chtopa (ENSAMXG00000031344)	MATCAP2 (ENSAMXG00000017314)	eepd1 (ENSAMXG00000029821)	septin7a (ENSAMXG00000017358)	xkr8.3 (ENSAMXG00000043627)	ENSAMXG00000017381
Mexicana tetra	MODERN SPECIES	15	rnmt (ENSAMXG00000040785)	zfpm2b (ENSAMXG00000017011)	thbs3b (ENSAMXG00000017055)	mtx1b (ENSAMXG00000040596)	txnipa (ENSAMXG00000036748)	polr3gla (ENSAMXG00000031351)	ENSAMXG00000017151	ENSAMXG00000017158	ENSAMXG00000027378	s100v2 (ENSAMXG00000039311)	ENSAMXG00000033263 #22	ENSAMXG00000017166 #22	ENSAMXG00000029326 #22	ENSAMXG00000032226 #22	ENSAMXG00000029209 #22	ENSAMXG00000032685 #22	ENSAMXG00000017176 #22	ENSAMXG00000035540 #22	thap7 (ENSAMXG00000035484)	ENSAMXG00000042040	zgc:64022 (ENSAMXG00000039620)	pex11b (ENSAMXG00000041962)	rit1 (ENSAMXG00000036287)	syt11a (ENSAMXG00000017261)	smad10a (ENSAMXG00000017275)	snapin (ENSAMXG00000041247)	chtopa (ENSAMXG00000031344)	MATCAP2 (ENSAMXG00000017314)	eepd1 (ENSAMXG00000029821)	septin7a (ENSAMXG00000017358)	xkr8.3 (ENSAMXG00000043627)
Mexicana tetra	DUPLICATION
Mexicana tetra	MODERN SPECIES	15	LDLRAD4 (ENSAMXG00000016814)	fam210aa (ENSAMXG00000016849)	rnmt (ENSAMXG00000040785)	zfpm2b (ENSAMXG00000017011)	thbs3b (ENSAMXG00000017055)	mtx1b (ENSAMXG00000040596)	txnipa (ENSAMXG00000036748)	polr3gla (ENSAMXG00000031351)	ENSAMXG00000017151	ENSAMXG00000017158	ENSAMXG00000027378	s100v2 (ENSAMXG00000039311)	ENSAMXG00000033263 #22	ENSAMXG00000017166 #22	ENSAMXG00000029326 #22	ENSAMXG00000032226 #22	ENSAMXG00000029209 #22	ENSAMXG00000032685 #22	ENSAMXG00000017176 #22	ENSAMXG00000035540 #22	thap7 (ENSAMXG00000035484)	ENSAMXG00000042040	zgc:64022 (ENSAMXG00000039620)	pex11b (ENSAMXG00000041962)	rit1 (ENSAMXG00000036287)	syt11a (ENSAMXG00000017261)	smad10a (ENSAMXG00000017275)	snapin (ENSAMXG00000041247)	chtopa (ENSAMXG00000031344)	MATCAP2 (ENSAMXG00000017314)	eepd1 (ENSAMXG00000029821)
Mexicana tetra	MODERN SPECIES	15	fam210aa (ENSAMXG00000016849)	rnmt (ENSAMXG00000040785)	zfpm2b (ENSAMXG00000017011)	thbs3b (ENSAMXG00000017055)	mtx1b (ENSAMXG00000040596)	txnipa (ENSAMXG00000036748)	polr3gla (ENSAMXG00000031351)	ENSAMXG00000017151	ENSAMXG00000017158	ENSAMXG00000027378	s100v2 (ENSAMXG00000039311)	ENSAMXG00000033263 #22	ENSAMXG00000017166 #22	ENSAMXG00000029326 #22	ENSAMXG00000032226 #22	ENSAMXG00000029209 #22	ENSAMXG00000032685 #22	ENSAMXG00000017176 #22	ENSAMXG00000035540 #22	thap7 (ENSAMXG00000035484)	ENSAMXG00000042040	zgc:64022 (ENSAMXG00000039620)	pex11b (ENSAMXG00000041962)	rit1 (ENSAMXG00000036287)	syt11a (ENSAMXG00000017261)	smad10a (ENSAMXG00000017275)	snapin (ENSAMXG00000041247)	chtopa (ENSAMXG00000031344)	MATCAP2 (ENSAMXG00000017314)	eepd1 (ENSAMXG00000029821)	septin7a (ENSAMXG00000017358)
Mexicana tetra	MODERN SPECIES	15	thbs3b (ENSAMXG00000017055)	mtx1b (ENSAMXG00000040596)	txnipa (ENSAMXG00000036748)	polr3gla (ENSAMXG00000031351)	ENSAMXG00000017151	ENSAMXG00000017158	ENSAMXG00000027378	s100v2 (ENSAMXG00000039311)	ENSAMXG00000033263 #22	ENSAMXG00000017166 #22	ENSAMXG00000029326 #22	ENSAMXG00000032226 #22	ENSAMXG00000029209 #22	ENSAMXG00000032685 #22	ENSAMXG00000017176 #22	ENSAMXG00000035540 #22	thap7 (ENSAMXG00000035484)	ENSAMXG00000042040	zgc:64022 (ENSAMXG00000039620)	pex11b (ENSAMXG00000041962)	rit1 (ENSAMXG00000036287)	syt11a (ENSAMXG00000017261)	smad10a (ENSAMXG00000017275)	snapin (ENSAMXG00000041247)	chtopa (ENSAMXG00000031344)	MATCAP2 (ENSAMXG00000017314)	eepd1 (ENSAMXG00000029821)	septin7a (ENSAMXG00000017358)	xkr8.3 (ENSAMXG00000043627)	ENSAMXG00000017381	ENSAMXG00000017391
Mexicana tetra	MODERN SPECIES	15	seh1l (ENSAMXG00000016797)	LDLRAD4 (ENSAMXG00000016814)	fam210aa (ENSAMXG00000016849)	rnmt (ENSAMXG00000040785)	zfpm2b (ENSAMXG00000017011)	thbs3b (ENSAMXG00000017055)	mtx1b (ENSAMXG00000040596)	txnipa (ENSAMXG00000036748)	polr3gla (ENSAMXG00000031351)	ENSAMXG00000017151	ENSAMXG00000017158	ENSAMXG00000027378	s100v2 (ENSAMXG00000039311)	ENSAMXG00000033263 #22	ENSAMXG00000017166 #22	ENSAMXG00000029326 #22	ENSAMXG00000032226 #22	ENSAMXG00000029209 #22	ENSAMXG00000032685 #22	ENSAMXG00000017176 #22	ENSAMXG00000035540 #22	thap7 (ENSAMXG00000035484)	ENSAMXG00000042040	zgc:64022 (ENSAMXG00000039620)	pex11b (ENSAMXG00000041962)	rit1 (ENSAMXG00000036287)	syt11a (ENSAMXG00000017261)	smad10a (ENSAMXG00000017275)	snapin (ENSAMXG00000041247)	chtopa (ENSAMXG00000031344)	MATCAP2 (ENSAMXG00000017314)
Electric eel	MODERN SPECIES	654		cpsf1 (ENSEEEG00000022064)	adck5 (ENSEEEG00000022285)	LIX1L (ENSEEEG00000022301)	ENSEEEG00000022304	thbs3b (ENSEEEG00000022306)	mtx1b (ENSEEEG00000022338)	txnipa (ENSEEEG00000022340)	polr3gla (ENSEEEG00000022342)	si:dkey-81h8.1 (ENSEEEG00000022343)	ENSEEEG00000022345	ENSEEEG00000022346	ENSEEEG00000022347	s100v2 (ENSEEEG00000022351)	ENSEEEG00000022356	prf1.2 (ENSEEEG00000022357) #22
Cyprinoidei	ANCESTRAL SPECIES	107								ENSGT00940000159283.c.a	ENSGT00950000182919.B.a.h	ENSGT00940000158522.m	ENSGT00990000204388	ENSGT00400000025005.a	ENSGT00940000154870.A.b	ENSGT00990000205603	ENSGT00940000161854.b	ENSGT00530000063725.o #22	ENSGT00730000111394	ENSGT00940000164158.A.b	ENSGT00390000014273.b	ENSGT00940000160132	ENSGT00940000159088.b	ENSGT00940000164585.c.a.a.b	ENSGT00390000008274	ENSGT00390000002869	ENSGT00390000004417.a	ENSGT00390000009677	ENSGT00940000154222.d.b	ENSGT00550000076117	ENSGT01090000261128	ENSGT00390000002381.a	ENSGT00940000160858
Cyprininae	DUPLICATION
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	416	ENSGT01090000260093.b.f.l.a.b	ENSGT01090000260093.b.f.k.a.b.b	ENSGT01090000260093.b.f.k.a.a	ENSGT00950000182978.B.b.a.b	ENSGT00940000164496.a.a.f.a	ENSGT00940000158053.t	ENSGT00390000008812.b.a.a.a	ENSGT00940000159283.c.a.b	ENSGT00950000182919.B.a.h	ENSGT00940000158522.m	ENSGT00990000204388.b	ENSGT00400000025005.a.a	ENSGT00940000154870.A.b.a.b	ENSGT00990000205603	ENSGT00940000161854.b.a	ENSGT00530000063725.o.j.a #22	ENSGT00730000111394.b	ENSGT00940000164158.A.b.b	ENSGT00940000159088.b.b	ENSGT00940000164585.c.a.a.b.b	ENSGT00390000008274.d	ENSGT00390000002869.fc.a	ENSGT00390000004417.a.n
Goldfish	MODERN SPECIES	10	ENSCARG00000014958	ENSCARG00000014952	ENSCARG00000014947	eya3 (ENSCARG00000014884)	si:ch211-195b13.1 (ENSCARG00000014814)	myo1g (ENSCARG00000009325)	ENSCARG00000009130	thbs3b (ENSCARG00000008823)	mtx1b (ENSCARG00000008746)	txnipa (ENSCARG00000008735)	polr3gla (ENSCARG00000008724)	ENSCARG00000008712	ENSCARG00000008697	ENSCARG00000008684	s100v2 (ENSCARG00000008661)	PRF1 (ENSCARG00000008627) #22	thap7 (ENSCARG00000008614)	zgc:64022 (ENSCARG00000008601)	rit1 (ENSCARG00000008584)	syt11a (ENSCARG00000008579)	smad10a (ENSCARG00000008543)	snapin (ENSCARG00000008536)	chtopa (ENSCARG00000008531)	eepd1 (ENSCARG00000008518)	septin7a (ENSCARG00000008393)	SLC66A2 (ENSCARG00000008370)	ENSCARG00000008368	ENSCARG00000008364	ctdp1 (ENSCARG00000008130)	adck5 (ENSCARG00000007821)	cpsf1 (ENSCARG00000007234)
Cyprininae_a	ANCESTRAL SPECIES	906														ENSGT00940000154870.A.b.a.a	ENSGT00940000161854.b.b	ENSGT00530000063725.o.j.a #22
Golden-line barbel	DUPLICATION
Golden-line barbel	MODERN SPECIES	3607																PRF1 (ENSSGRG00000007758) #22
Golden-line barbel	MODERN SPECIES	2939																PRF1 (ENSSGRG00000004873) #22
Common carp reference	MODERN SPECIES	12	ENSCCRG00000075227	ENSCCRG00000024720	eya3 (ENSCCRG00000007984)	si:ch211-195b13.1 (ENSCCRG00000059502)	myo1g (ENSCCRG00000028621)	si:dkeyp-92c9.2 (ENSCCRG00000065349)	thbs3b (ENSCCRG00000030623)	mtx1b (ENSCCRG00000081037)	txnipa (ENSCCRG00000074922)	polr3gla (ENSCCRG00000074506)	ENSCCRG00000055851	ENSCCRG00000075692	ENSCCRG00000006002	ENSCCRG00000031127	s100v2 (ENSCCRG00000069163)	ENSCCRG00000030196 #22	ENSCCRG00000035660 #22	thap7 (ENSCCRG00000054201)	zgc:64022 (ENSCCRG00000055608)	pex11b (ENSCCRG00000069568)	rit1 (ENSCCRG00000041160)	syt11a (ENSCCRG00000042850)	ENSCCRG00000074065	smad10a (ENSCCRG00000001249)	chtopa (ENSCCRG00000012928)	MATCAP2 (ENSCCRG00000012921)	eepd1 (ENSCCRG00000061506)	septin7a (ENSCCRG00000062294)	SLC66A2 (ENSCCRG00000028814)	ENSCCRG00000071890	ctdp1 (ENSCCRG00000040245)
Cyprininae	ANCESTRAL SPECIES																	ENSGT00530000063725.o.j.b #22
Cyprininae_a	ANCESTRAL SPECIES	147	ENSGT01090000260093.b.e	ENSGT01090000260093.b.f.l.a.b	ENSGT01090000260093.b.f.k.a.b.b	ENSGT01090000260093.b.f.k.a.a	ENSGT00950000182978.B.a	ENSGT00940000164496.a.a.f.a	ENSGT00940000158053.t	ENSGT00390000008812.b.a.a.a	ENSGT00940000159283.c.a.b	ENSGT00950000182919.B.a.h	ENSGT00990000204388.b	ENSGT00400000025005.a.a	ENSGT00940000154870.A.b.a.b	ENSGT00990000205603	ENSGT00940000161854.b.a	ENSGT00530000063725.o.j.b #22	ENSGT00730000111394.b	ENSGT00940000164158.A.b.b	ENSGT00940000159088.b.b	ENSGT00940000164585.c.a.a.b.b	ENSGT00390000008274.d	ENSGT00390000002869.fc.a	ENSGT00390000004417.a.n	ENSGT00390000009677.f	ENSGT00940000154222.d.b.k.a
Common carp reference	MODERN SPECIES	12	ENSCCRG00000024720	eya3 (ENSCCRG00000007984)	si:ch211-195b13.1 (ENSCCRG00000059502)	myo1g (ENSCCRG00000028621)	si:dkeyp-92c9.2 (ENSCCRG00000065349)	thbs3b (ENSCCRG00000030623)	mtx1b (ENSCCRG00000081037)	txnipa (ENSCCRG00000074922)	polr3gla (ENSCCRG00000074506)	ENSCCRG00000055851	ENSCCRG00000075692	ENSCCRG00000006002	ENSCCRG00000031127	s100v2 (ENSCCRG00000069163)	ENSCCRG00000030196 #22	ENSCCRG00000035660 #22	thap7 (ENSCCRG00000054201)	zgc:64022 (ENSCCRG00000055608)	pex11b (ENSCCRG00000069568)	rit1 (ENSCCRG00000041160)	syt11a (ENSCCRG00000042850)	ENSCCRG00000074065	smad10a (ENSCCRG00000001249)	chtopa (ENSCCRG00000012928)	MATCAP2 (ENSCCRG00000012921)	eepd1 (ENSCCRG00000061506)	septin7a (ENSCCRG00000062294)	SLC66A2 (ENSCCRG00000028814)	ENSCCRG00000071890	ctdp1 (ENSCCRG00000040245)	adck5 (ENSCCRG00000040155)
Cyprininae	ANCESTRAL SPECIES	112								ENSGT01100000263547.a.a.a.c.b.a	ENSGT00940000158053.s	ENSGT00390000008812.b.a.a.b	ENSGT00940000159283.c.a.a	ENSGT00990000204388.a	ENSGT00400000025005.a.b	ENSGT00940000154870.A.b.a.a	ENSGT00940000161854.b.b	ENSGT00530000063725.o.k #22	ENSGT00730000111394.a	ENSGT00940000164158.A.b.a	ENSGT00390000014273.b	ENSGT00940000160132	ENSGT00940000159088.b.a	ENSGT00940000164585.c.a.a.b.a.b	ENSGT00390000008274.c	ENSGT00390000002869.fc.b	ENSGT00390000004417.a.m	ENSGT00390000009677	ENSGT00940000154222.d.b.k	ENSGT00940000154222.d.b.l	ENSGT00550000076117	ENSGT00390000002381.a.c	ENSGT00940000160858.c
Goldfish	MODERN SPECIES	55			ENSCARG00000025848	ENSCARG00000025865	myo1g (ENSCARG00000026063)	si:dkeyp-92c9.2 (ENSCARG00000029731)	thbs3b (ENSCARG00000029783)	txnipa (ENSCARG00000031649)	polr3gla (ENSCARG00000031668)	ENSCARG00000031693	ENSCARG00000031702	s100v2 (ENSCARG00000031713)	s100v2 (ENSCARG00000031723)	ENSCARG00000031739	s100v2 (ENSCARG00000031772)	ENSCARG00000031795 #22	ENSCARG00000031836	thap7 (ENSCARG00000031845)	zgc:64022 (ENSCARG00000031849)	pex11b (ENSCARG00000031855)	rit1 (ENSCARG00000031864)	syt11a (ENSCARG00000031880)	smad10a (ENSCARG00000031910)	snapin (ENSCARG00000031975)	chtopa (ENSCARG00000031989)	MATCAP2 (ENSCARG00000032017)	eepd1 (ENSCARG00000032029)	septin7a (ENSCARG00000032160)	HSBP1L1 (ENSCARG00000036362)	SLC66A2 (ENSCARG00000036372)	KCNG2 (ENSCARG00000036382)
Cyprininae_a	ANCESTRAL SPECIES	122	ENSGT01090000260093.b.f.l.a.a	ENSGT00940000178710	ENSGT01090000260093.b.f.k.a.b.a	ENSGT01090000260093.b.f.k.b	ENSGT00950000182978.B.b.a.a	ENSGT00940000164496.a.a.f.b	ENSGT01100000263547.a.a.a.c.b.a	ENSGT00940000158053.s	ENSGT00390000008812.b.a.a.b	ENSGT00940000159283.c.a.a	ENSGT00940000158522.m	ENSGT00990000204388.a	ENSGT00400000025005.a.b	ENSGT00940000154870.A.b.b	ENSGT00990000203866	ENSGT00530000063725.o.k #22	ENSGT00730000111394.a	ENSGT00940000164158.A.b.a	ENSGT00390000014273.b	ENSGT00940000160132	ENSGT00940000159088.b.a	ENSGT00940000164585.c.a.a.b.a.b	ENSGT00390000008274.c	ENSGT00390000002869.fc.b	ENSGT00390000004417.a.m	ENSGT00390000009677.g	ENSGT00940000154222.d.b.l	ENSGT00550000076117	ENSGT00390000002381.a.c	ENSGT00940000160858.c	ENSGT00390000015641.r
Common carp reference	DUPLICATION
Common carp reference	DUPLICATION
Common carp reference	DUPLICATION
Common carp reference	MODERN SPECIES	31	ENSCCRG00000024721	si:ch211-195b13.1 (ENSCCRG00000025282)	ENSCCRG00000069835	ENSCCRG00000076637	ENSCCRG00000058078	myo1g (ENSCCRG00000058923)	si:dkeyp-92c9.2 (ENSCCRG00000066400)	thbs3b (ENSCCRG00000020222)	txnipa (ENSCCRG00000035169)	polr3gla (ENSCCRG00000063361)	ENSCCRG00000028793	ENSCCRG00000052760	s100v2 (ENSCCRG00000017171)	ENSCCRG00000043162	ENSCCRG00000030192 #22	ENSCCRG00000030188 #22	ENSCCRG00000062107 #22	ENSCCRG00000041180 #22	thap7 (ENSCCRG00000041179)	zgc:64022 (ENSCCRG00000061002)	pex11b (ENSCCRG00000041169)	rit1 (ENSCCRG00000065435)	syt11a (ENSCCRG00000001255)	smad10a (ENSCCRG00000082347)	chtopa (ENSCCRG00000066556)	MATCAP2 (ENSCCRG00000047215)	eepd1 (ENSCCRG00000047217)	septin7a (ENSCCRG00000012584)	HSBP1L1 (ENSCCRG00000060925)	SLC66A2 (ENSCCRG00000061651)	KCNG2 (ENSCCRG00000077455)
Common carp reference	MODERN SPECIES	31	si:ch211-195b13.1 (ENSCCRG00000025282)	ENSCCRG00000069835	ENSCCRG00000076637	ENSCCRG00000058078	myo1g (ENSCCRG00000058923)	si:dkeyp-92c9.2 (ENSCCRG00000066400)	thbs3b (ENSCCRG00000020222)	txnipa (ENSCCRG00000035169)	polr3gla (ENSCCRG00000063361)	ENSCCRG00000028793	ENSCCRG00000052760	s100v2 (ENSCCRG00000017171)	ENSCCRG00000043162	ENSCCRG00000030192 #22	ENSCCRG00000030188 #22	ENSCCRG00000062107 #22	ENSCCRG00000041180 #22	thap7 (ENSCCRG00000041179)	zgc:64022 (ENSCCRG00000061002)	pex11b (ENSCCRG00000041169)	rit1 (ENSCCRG00000065435)	syt11a (ENSCCRG00000001255)	smad10a (ENSCCRG00000082347)	chtopa (ENSCCRG00000066556)	MATCAP2 (ENSCCRG00000047215)	eepd1 (ENSCCRG00000047217)	septin7a (ENSCCRG00000012584)	HSBP1L1 (ENSCCRG00000060925)	SLC66A2 (ENSCCRG00000061651)	KCNG2 (ENSCCRG00000077455)	ctdp1 (ENSCCRG00000079408)
Common carp reference	MODERN SPECIES	31	ENSCCRG00000040439	ENSCCRG00000024721	si:ch211-195b13.1 (ENSCCRG00000025282)	ENSCCRG00000069835	ENSCCRG00000076637	ENSCCRG00000058078	myo1g (ENSCCRG00000058923)	si:dkeyp-92c9.2 (ENSCCRG00000066400)	thbs3b (ENSCCRG00000020222)	txnipa (ENSCCRG00000035169)	polr3gla (ENSCCRG00000063361)	ENSCCRG00000028793	ENSCCRG00000052760	s100v2 (ENSCCRG00000017171)	ENSCCRG00000043162	ENSCCRG00000030192 #22	ENSCCRG00000030188 #22	ENSCCRG00000062107 #22	ENSCCRG00000041180 #22	thap7 (ENSCCRG00000041179)	zgc:64022 (ENSCCRG00000061002)	pex11b (ENSCCRG00000041169)	rit1 (ENSCCRG00000065435)	syt11a (ENSCCRG00000001255)	smad10a (ENSCCRG00000082347)	chtopa (ENSCCRG00000066556)	MATCAP2 (ENSCCRG00000047215)	eepd1 (ENSCCRG00000047217)	septin7a (ENSCCRG00000012584)	HSBP1L1 (ENSCCRG00000060925)	SLC66A2 (ENSCCRG00000061651)
Common carp reference	MODERN SPECIES	31	ENSCCRG00000069835	ENSCCRG00000076637	ENSCCRG00000058078	myo1g (ENSCCRG00000058923)	si:dkeyp-92c9.2 (ENSCCRG00000066400)	thbs3b (ENSCCRG00000020222)	txnipa (ENSCCRG00000035169)	polr3gla (ENSCCRG00000063361)	ENSCCRG00000028793	ENSCCRG00000052760	s100v2 (ENSCCRG00000017171)	ENSCCRG00000043162	ENSCCRG00000030192 #22	ENSCCRG00000030188 #22	ENSCCRG00000062107 #22	ENSCCRG00000041180 #22	thap7 (ENSCCRG00000041179)	zgc:64022 (ENSCCRG00000061002)	pex11b (ENSCCRG00000041169)	rit1 (ENSCCRG00000065435)	syt11a (ENSCCRG00000001255)	smad10a (ENSCCRG00000082347)	chtopa (ENSCCRG00000066556)	MATCAP2 (ENSCCRG00000047215)	eepd1 (ENSCCRG00000047217)	septin7a (ENSCCRG00000012584)	HSBP1L1 (ENSCCRG00000060925)	SLC66A2 (ENSCCRG00000061651)	KCNG2 (ENSCCRG00000077455)	ctdp1 (ENSCCRG00000079408)	cpsf1 (ENSCCRG00000006842)
Golden-line barbel	DUPLICATION
Golden-line barbel	MODERN SPECIES	386																ENSSGRG00000024367 #22	ENSSGRG00000024388	thap7 (ENSSGRG00000024391)	zgc:64022 (ENSSGRG00000024396)	pex11b (ENSSGRG00000024400)	rit1 (ENSSGRG00000024403)	syt11a (ENSSGRG00000024415)	smad10a (ENSSGRG00000024430)	snapin (ENSSGRG00000024496)	chtopa (ENSSGRG00000024497)	ENSSGRG00000024498	MATCAP2 (ENSSGRG00000024500)	eepd1 (ENSSGRG00000024532)	septin7a (ENSSGRG00000024543)	SLC66A2 (ENSSGRG00000024660)	ENSSGRG00000024662
Golden-line barbel	MODERN SPECIES	390				ENSSGRG00000032819	tfap2a (ENSSGRG00000032793)	tmem14ca (ENSSGRG00000032792)	mak (ENSSGRG00000032791)	mtx1b (ENSSGRG00000032786)	txnipa (ENSSGRG00000032785)	polr3gla (ENSSGRG00000032782)	ENSSGRG00000032780	ENSSGRG00000032779	ENSSGRG00000032771	s100v2 (ENSSGRG00000032769)	ENSSGRG00000032768	ENSSGRG00000032763 #22
Zebrafish	DUPLICATION
Zebrafish	DUPLICATION
Zebrafish	MODERN SPECIES	10	eya3 (ENSDARG00000036100)	si:ch211-195b13.1 (ENSDARG00000016623)	ENSDARG00000057010	myo1g (ENSDARG00000036104)	si:dkeyp-92c9.2 (ENSDARG00000036105)	ENSDARG00000098950	polr3gla (ENSDARG00000012044)	txnipa (ENSDARG00000036107)	mtx1b (ENSDARG00000036109)	thbs3b (ENSDARG00000012060)	si:dkey-81h8.1 (ENSDARG00000094074)	ENSDARG00000062352	s100v2 (ENSDARG00000070702)	ENSDARG00000109428 #22	ENSDARG00000115439	PRF1 (ENSDARG00000110781) #22	prf1.2 (ENSDARG00000021444) #22	thap7 (ENSDARG00000070704)	zgc:64022 (ENSDARG00000070705)	pex11b (ENSDARG00000069147)	rit1 (ENSDARG00000069150)	syt11a (ENSDARG00000057913)	smad10a (ENSDARG00000045094)	snapin (ENSDARG00000062382)	chtopa (ENSDARG00000057234)	MATCAP2 (ENSDARG00000057227)	ENSDARG00000114744	ENSDARG00000094339	ENSDARG00000116095	ENSDARG00000070740	ENSDARG00000114139
Zebrafish	MODERN SPECIES	10	si:ch211-195b13.1 (ENSDARG00000016623)	ENSDARG00000057010	myo1g (ENSDARG00000036104)	si:dkeyp-92c9.2 (ENSDARG00000036105)	ENSDARG00000098950	polr3gla (ENSDARG00000012044)	txnipa (ENSDARG00000036107)	mtx1b (ENSDARG00000036109)	thbs3b (ENSDARG00000012060)	si:dkey-81h8.1 (ENSDARG00000094074)	ENSDARG00000062352	s100v2 (ENSDARG00000070702)	ENSDARG00000109428 #22	ENSDARG00000115439	PRF1 (ENSDARG00000110781) #22	prf1.2 (ENSDARG00000021444) #22	thap7 (ENSDARG00000070704)	zgc:64022 (ENSDARG00000070705)	pex11b (ENSDARG00000069147)	rit1 (ENSDARG00000069150)	syt11a (ENSDARG00000057913)	smad10a (ENSDARG00000045094)	snapin (ENSDARG00000062382)	chtopa (ENSDARG00000057234)	MATCAP2 (ENSDARG00000057227)	ENSDARG00000114744	ENSDARG00000094339	ENSDARG00000116095	ENSDARG00000070740	ENSDARG00000114139	ENSDARG00000115246
Zebrafish	MODERN SPECIES	10	ENSDARG00000004498	ENSDARG00000078841	eya3 (ENSDARG00000036100)	si:ch211-195b13.1 (ENSDARG00000016623)	ENSDARG00000057010	myo1g (ENSDARG00000036104)	si:dkeyp-92c9.2 (ENSDARG00000036105)	ENSDARG00000098950	polr3gla (ENSDARG00000012044)	txnipa (ENSDARG00000036107)	mtx1b (ENSDARG00000036109)	thbs3b (ENSDARG00000012060)	si:dkey-81h8.1 (ENSDARG00000094074)	ENSDARG00000062352	s100v2 (ENSDARG00000070702)	ENSDARG00000109428 #22	ENSDARG00000115439	PRF1 (ENSDARG00000110781) #22	prf1.2 (ENSDARG00000021444) #22	thap7 (ENSDARG00000070704)	zgc:64022 (ENSDARG00000070705)	pex11b (ENSDARG00000069147)	rit1 (ENSDARG00000069150)	syt11a (ENSDARG00000057913)	smad10a (ENSDARG00000045094)	snapin (ENSDARG00000062382)	chtopa (ENSDARG00000057234)	MATCAP2 (ENSDARG00000057227)	ENSDARG00000114744	ENSDARG00000094339	ENSDARG00000116095
Clupeiformes	ANCESTRAL SPECIES	98	ENSGT00390000017397	ENSGT00930000151196.b	ENSGT00390000004520	ENSGT00940000160092.B	ENSGT00940000160261.g	ENSGT00940000160439	ENSGT00940000161770	ENSGT00950000182973.b.b.c	ENSGT00940000153561.b.a.b.a.a	ENSGT00940000161700	ENSGT00940000164151.a.b	ENSGT00920000149270	ENSGT00940000160628	ENSGT00940000157978.a	ENSGT00940000164067.B.z	ENSGT00530000063725.o #22	ENSGT00940000164067.B.y	ENSGT00940000165280.a.b	ENSGT00390000009109	ENSGT00940000154348.c.a.a	ENSGT00390000018316.a.f	ENSGT00940000166194	ENSGT00940000153861.b.b	ENSGT00910000147748	ENSGT00940000153536.a.a.a.b	ENSGT00940000155813.i.a	ENSGT00940000157763	ENSGT00940000160068.a.a	ENSGT00950000183040.B	ENSGT00530000063509.A.g	ENSGT01030000235186
Denticle herring	MODERN SPECIES	17	retsat.2 (ENSDCDG00000007183)	ENSDCDG00000007161	ENSDCDG00000007132	tmem98 (ENSDCDG00000007109)	ENSDCDG00000007096	ZNF281 (ENSDCDG00000006981)	ENSDCDG00000006924	MPP3 (ENSDCDG00000005365)	asic2 (ENSDCDG00000005160)	HROB (ENSDCDG00000005135)	asb16 (ENSDCDG00000005132)	tmub2 (ENSDCDG00000005129)	cldni (ENSDCDG00000005128)	coro1a (ENSDCDG00000005120)	paqr4a (ENSDCDG00000005114)	ENSDCDG00000005111 #22	prf1.1 (ENSDCDG00000005105)	cox6a2 (ENSDCDG00000005084)	ENSDCDG00000005073	elob (ENSDCDG00000005068)	TMEM184B (ENSDCDG00000004750)	ENSDCDG00000004731	CSNK1E (ENSDCDG00000004724)	ENSDCDG00000004711	ENSDCDG00000004717	ENSDCDG00000004707	ENSDCDG00000004705	ENSDCDG00000004704	pick1 (ENSDCDG00000004685)	plbd1a (ENSDCDG00000004593)	ENSDCDG00000004589
Euteleosteomorpha	ANCESTRAL SPECIES	291												ENSGT00400000025005	ENSGT00940000154870.A.b	ENSGT00990000205603	ENSGT00940000161854.b	ENSGT00530000063725.o #22	ENSGT00730000111394	ENSGT00940000156361.A.a	ENSGT00940000164158.A.b	ENSGT00390000014273.b	ENSGT00940000160132	ENSGT00940000159088.b	ENSGT00940000164585.c.a.a.b	ENSGT00390000008274	ENSGT00390000002869
Acanthomorphata	ANCESTRAL SPECIES	2	ENSGT00940000158989	ENSGT00390000017397	ENSGT00930000151196.b	ENSGT00390000004520	ENSGT00940000160092.B	ENSGT00940000160261.g	ENSGT00940000160439	ENSGT00940000161770	ENSGT00950000182973.b.b.c	ENSGT00940000153561.b.a.b.a.a	ENSGT00940000161700	ENSGT00940000164151.a.b	ENSGT00920000149270	ENSGT00940000160628	ENSGT00940000157978.a	ENSGT00530000063725.o #22	ENSGT00940000164067.B	ENSGT00940000165280.a.b	ENSGT00730000112732	ENSGT00940000154612	ENSGT00390000009109	ENSGT00730000114636	ENSGT00940000154348.c.a.a	ENSGT00390000018316.a.f	ENSGT00940000166194	ENSGT00390000000050	ENSGT00630000091000	ENSGT00520000055626.b	ENSGT00390000012483	ENSGT00940000164923.a.b	ENSGT00940000159038.a.b
Euacanthomorphacea	ANCESTRAL SPECIES	5	ENSGT00940000158989	ENSGT00390000017397	ENSGT00930000151196.b	ENSGT00390000004520	ENSGT00940000160092.B	ENSGT00940000160261.g	ENSGT00940000160439	ENSGT00940000161770	ENSGT00950000182973.b.b.c	ENSGT00940000153561.b.a.b.a.a	ENSGT00940000161700	ENSGT00940000164151.a.b	ENSGT00920000149270	ENSGT00940000160628	ENSGT00940000157978.a	ENSGT00530000063725.o #22	ENSGT00940000164067.B	ENSGT00940000165280.a.b	ENSGT00730000112732	ENSGT00940000154612	ENSGT00390000009109	ENSGT00730000114636	ENSGT00940000154348.c.a.a.p	ENSGT00390000018316.a.f	ENSGT00940000166194	ENSGT00390000000050	ENSGT00630000091000	ENSGT00520000055626.b	ENSGT00390000012483	ENSGT00940000164923.a.b	ENSGT00940000159038.a.b
Pinecone sodierfish	DUPLICATION
Pinecone sodierfish	DUPLICATION
Pinecone sodierfish	MODERN SPECIES		ENSMMDG00005008872	RPTOR (ENSMMDG00005007160)	NPTX1 (ENSMMDG00005007140)	ENDOV (ENSMMDG00005007139)	SEC14L1 (ENSMMDG00005007089)	ENSMMDG00005007075	trim25 (ENSMMDG00005007072)	dgke (ENSMMDG00005007057)	si:dkey-31g6.6 (ENSMMDG00005007051)	cbx8b (ENSMMDG00005007049)	ENSMMDG00005007047	CARD14 (ENSMMDG00005007037)	ccdc40 (ENSMMDG00005007031)	TEX2 (ENSMMDG00005007027)	ENSMMDG00005006920 #22	ENSMMDG00005006827 #22	ENSMMDG00005006779 #22	AXIN2 (ENSMMDG00005006763)	ENSMMDG00005006754	ENSMMDG00005006745	ENSMMDG00005006741	ENSMMDG00005006739	ENSMMDG00005006737	ENSMMDG00005006735	exosc9 (ENSMMDG00005006725)	clgn (ENSMMDG00005003291)	scoca (ENSMMDG00005003212)	ENSMMDG00005003208	ENSMMDG00005003205	naa15b (ENSMMDG00005001073)	RAB33B (ENSMMDG00005001047)
Pinecone sodierfish	MODERN SPECIES		p4hb (ENSMMDG00005008877)	ENSMMDG00005008872	RPTOR (ENSMMDG00005007160)	NPTX1 (ENSMMDG00005007140)	ENDOV (ENSMMDG00005007139)	SEC14L1 (ENSMMDG00005007089)	ENSMMDG00005007075	trim25 (ENSMMDG00005007072)	dgke (ENSMMDG00005007057)	si:dkey-31g6.6 (ENSMMDG00005007051)	cbx8b (ENSMMDG00005007049)	ENSMMDG00005007047	CARD14 (ENSMMDG00005007037)	ccdc40 (ENSMMDG00005007031)	TEX2 (ENSMMDG00005007027)	ENSMMDG00005006920 #22	ENSMMDG00005006827 #22	ENSMMDG00005006779 #22	AXIN2 (ENSMMDG00005006763)	ENSMMDG00005006754	ENSMMDG00005006745	ENSMMDG00005006741	ENSMMDG00005006739	ENSMMDG00005006737	ENSMMDG00005006735	exosc9 (ENSMMDG00005006725)	clgn (ENSMMDG00005003291)	scoca (ENSMMDG00005003212)	ENSMMDG00005003208	ENSMMDG00005003205	naa15b (ENSMMDG00005001073)
Pinecone sodierfish	MODERN SPECIES		RPTOR (ENSMMDG00005007160)	NPTX1 (ENSMMDG00005007140)	ENDOV (ENSMMDG00005007139)	SEC14L1 (ENSMMDG00005007089)	ENSMMDG00005007075	trim25 (ENSMMDG00005007072)	dgke (ENSMMDG00005007057)	si:dkey-31g6.6 (ENSMMDG00005007051)	cbx8b (ENSMMDG00005007049)	ENSMMDG00005007047	CARD14 (ENSMMDG00005007037)	ccdc40 (ENSMMDG00005007031)	TEX2 (ENSMMDG00005007027)	ENSMMDG00005006920 #22	ENSMMDG00005006827 #22	ENSMMDG00005006779 #22	AXIN2 (ENSMMDG00005006763)	ENSMMDG00005006754	ENSMMDG00005006745	ENSMMDG00005006741	ENSMMDG00005006739	ENSMMDG00005006737	ENSMMDG00005006735	exosc9 (ENSMMDG00005006725)	clgn (ENSMMDG00005003291)	scoca (ENSMMDG00005003212)	ENSMMDG00005003208	ENSMMDG00005003205	naa15b (ENSMMDG00005001073)	RAB33B (ENSMMDG00005001047)	elf2b (ENSMMDG00005001044)
Percomorphaceae	ANCESTRAL SPECIES	3	ENSGT00940000158989	ENSGT00390000017397	ENSGT00930000151196.b	ENSGT00390000004520	ENSGT00940000160092.B	ENSGT00940000160261.g	ENSGT00940000160439	ENSGT00940000161770	ENSGT00950000182973.b.b.c	ENSGT00940000153561.b.a.b.a.a	ENSGT00940000161700	ENSGT00940000164151.a.b	ENSGT00920000149270	ENSGT00940000160628	ENSGT00940000157978.a	ENSGT00530000063725.o #22	ENSGT00940000164067.B	ENSGT00940000165280.a.b	ENSGT00730000112732	ENSGT00940000154612	ENSGT00390000009109	ENSGT00730000114636	ENSGT00940000154348.c.a.a.p	ENSGT00390000018316.a.f	ENSGT00940000166194	ENSGT00390000000050	ENSGT00630000091000	ENSGT00520000055626.b	ENSGT00390000012483	ENSGT00940000164923.a.b	ENSGT00940000159038.a.b
Percomorphaceae_B	ANCESTRAL SPECIES		ENSGT00940000176115	ENSGT00940000168473	ENSGT00390000011880.a.a	ENSGT00940000155386.a	ENSGT00940000165433	ENSGT00940000164979.f.a	ENSGT00940000164979.f.b	ENSGT00940000158604	ENSGT00390000006555	ENSGT00940000158476.a	ENSGT00940000160081.c.a	ENSGT00940000160777	ENSGT00440000035688	ENSGT00390000000463.a	ENSGT00950000182933.B.b	ENSGT00530000063725.o #22	ENSGT00940000157338.a	ENSGT00950000183035.b.f	ENSGT00940000163234.a.b.h.a.a.b	ENSGT00940000163234.a.b.h.a.b	ENSGT00940000163454.a.a.a.a	ENSGT00940000163454.a.a.b	ENSGT00950000183130.A	ENSGT00950000182915.a.a.b	ENSGT00390000008828.fb.b	ENSGT00950000183201.b.a.b	ENSGT00870000137155	ENSGT00950000183174.B.a.e	ENSGT00940000157090.h	ENSGT00990000203987	ENSGT00940000154953.b
Ovalentaria	ANCESTRAL SPECIES		ENSGT00940000176115	ENSGT00940000168473	ENSGT00940000155386.a	ENSGT00940000165433	ENSGT00940000164979.f.a	ENSGT00940000164979.f.b	ENSGT00940000158604	ENSGT00390000006555	ENSGT00940000158476.a	ENSGT00940000160081.c.a	ENSGT00940000160777	ENSGT00440000035688	ENSGT00390000000463.a	ENSGT00950000182933.B.b	ENSGT00990000203866	ENSGT00530000063725.o #22	ENSGT00940000157338.a	ENSGT00950000183035.b.f	ENSGT00940000163234.a.b.h.a.a.b	ENSGT00940000163234.a.b.h.a.b	ENSGT00940000163454.a.a.a.a	ENSGT00940000163454.a.a.b	ENSGT00950000183130.A	ENSGT00950000182915.a.a.b	ENSGT00390000008828.fb.b	ENSGT00950000183201.b.a.b	ENSGT00870000137155	ENSGT00950000183174.B.a.e	ENSGT00940000157090.h	ENSGT00990000203987	ENSGT00940000154953.b
Atherinomorphae	ANCESTRAL SPECIES	23	ENSGT00640000091541	ENSGT01060000248591.a.a.b.a.b	ENSGT00390000011880.b	ENSGT00940000155386.a	ENSGT00940000165433	ENSGT00940000164979.f.a	ENSGT00940000164979.f.b	ENSGT00940000158604	ENSGT00390000006555	ENSGT00940000158476.a	ENSGT00940000160081.c.a	ENSGT00940000160777	ENSGT00440000035688	ENSGT00390000000463.a	ENSGT00950000182933.B.b	ENSGT00530000063725.o #22	ENSGT00940000157338.a	ENSGT00950000183035.b.f	ENSGT00940000163234.a.b.h.a.a.b	ENSGT00940000163234.a.b.h.a.b	ENSGT00940000163454.a.a.a.a	ENSGT00940000163454.a.a.b	ENSGT00950000183130.A	ENSGT00950000182915.a.a.b	ENSGT00390000008828.fb.b	ENSGT00950000183201.b.a.b	ENSGT00870000137155	ENSGT00950000183174.B.a.e	ENSGT00940000157090.h	ENSGT00940000154953.b	ENSGT00940000155249.g
Oryzias	ANCESTRAL SPECIES																	ENSGT00530000063725.o #22
Oryzias_b	ANCESTRAL SPECIES																	ENSGT00530000063725.o #22
Javanese ricefish	MODERN SPECIES	22	ENSOJAG00000014791	hsd3b7 (ENSOJAG00000014804)	tbc1d10b (ENSOJAG00000014814)	mylpfa (ENSOJAG00000014820)	pheta2 (ENSOJAG00000014851)	cd2bp2 (ENSOJAG00000014857)	ENSOJAG00000014872	ENSOJAG00000014887	zgc:163143 (ENSOJAG00000014994)	elob (ENSOJAG00000015041)	ENSOJAG00000015058	ENSOJAG00000015063	ENSOJAG00000015076	ENSOJAG00000015097	ENSOJAG00000015114	ENSOJAG00000015206 #22	ENSOJAG00000015214	ENSOJAG00000015233	paqr4a (ENSOJAG00000015350)	coro1a (ENSOJAG00000015376)	cldni (ENSOJAG00000015613)	ppp1caa (ENSOJAG00000015649)	kmt5c (ENSOJAG00000016116)	ENSOJAG00000016275	SYT3 (ENSOJAG00000016333)	med25 (ENSOJAG00000000087)	LRRC4B (ENSOJAG00000000121)	mybpc2a (ENSOJAG00000000296)	emc10 (ENSOJAG00000000403)	zgc:195001 (ENSOJAG00000000409)	ENSOJAG00000000415
Indian medaka	MODERN SPECIES	452																ENSOMEG00000014256 #22
Cyprinodontiformes	ANCESTRAL SPECIES	24	ENSGT00640000091541	ENSGT01060000248591.a.a.b.a.b	ENSGT00390000011880.b	ENSGT00940000155386.a	ENSGT00940000165433	ENSGT00940000164979.f.a	ENSGT00940000164979.f.b	ENSGT00940000158604	ENSGT00390000006555	ENSGT00940000158476.a	ENSGT00940000160081.c.a	ENSGT00940000160777	ENSGT00440000035688	ENSGT00390000000463.a	ENSGT00950000182933.B.b	ENSGT00530000063725.o #22	ENSGT00940000157338.a	ENSGT00950000183035.b.f	ENSGT00940000163234.a.b.h.a.a.b	ENSGT00940000163234.a.b.h.a.b	ENSGT00940000163454.a.a.a.a	ENSGT00940000163454.a.a.b	ENSGT00950000183130.A	ENSGT00950000182915.a.a.b	ENSGT00390000008828.fb.b	ENSGT00950000183201.b.a.b	ENSGT00870000137155	ENSGT00950000183174.B.a.e	ENSGT00940000157090.h	ENSGT00940000154953.b	ENSGT00940000155249.g
Aplocheiloidei	ANCESTRAL SPECIES	31											ENSGT00940000160081.c.a	ENSGT00940000160777	ENSGT00440000035688	ENSGT00390000000463.a	ENSGT00950000182933.B.b	ENSGT00530000063725.o #22	ENSGT00940000157338.a	ENSGT00950000183035.b.f	ENSGT00940000163234.a.b.h.a.b	ENSGT00940000163454.a.a.a.a	ENSGT00940000163454.a.a.b	ENSGT00950000183130.A	ENSGT00950000182915.a.a.b	ENSGT00390000008828.fb.b	ENSGT00950000183201.b.a.b	ENSGT00870000137155	ENSGT00950000183174.B.a.e	ENSGT00940000157090.h	ENSGT00940000154953.b	ENSGT00940000155249.g	ENSGT00940000163186
Mangrove rivulus	DUPLICATION
Mangrove rivulus	MODERN SPECIES	175											CBX4 (ENSKMAG00000020513)	CARD14 (ENSKMAG00000020488)	ccdc40 (ENSKMAG00000020460)	TEX2 (ENSKMAG00000020442)	ENSKMAG00000020424	ENSKMAG00000020399 #22	AXIN2 (ENSKMAG00000020364)	ENSKMAG00000020334	slc47a2.1 (ENSKMAG00000020263)	ENSKMAG00000020222	ENSKMAG00000020201	exosc9 (ENSKMAG00000020177)	clgn (ENSKMAG00000020139)	scoca (ENSKMAG00000020126)	ENSKMAG00000020113	naa15b (ENSKMAG00000020058)	RAB33B (ENSKMAG00000020034)	ENSKMAG00000020025	elf2b (ENSKMAG00000020008)	NOCT (ENSKMAG00000019996)	ENSKMAG00000019980
Mangrove rivulus	MODERN SPECIES	412										tnika (ENSKMAG00000005869)	slc2a2 (ENSKMAG00000006015)	ENSKMAG00000006032	ENSKMAG00000006056	slc7a14a (ENSKMAG00000006075)	cldn11a (ENSKMAG00000006110)	ENSKMAG00000006153 #22
Cyprinodontoidei	DUPLICATION
Cyprinodontoidei	DUPLICATION
Cyprinodontoidei	ANCESTRAL SPECIES																	ENSGT00530000063725.o.r.a #22
NAME_4	ANCESTRAL SPECIES	44	ENSGT00640000091541	ENSGT01060000248591.a.a.b.a.b	ENSGT00390000011880.b	ENSGT00940000155386.a	ENSGT00940000165433	ENSGT00940000164979.f.a	ENSGT00940000164979.f.b	ENSGT00940000158604	ENSGT00390000006555	ENSGT00940000158476.a	ENSGT00940000160081.c.a	ENSGT00940000160777	ENSGT00440000035688	ENSGT00390000000463.a	ENSGT00950000182933.B.b	ENSGT00530000063725.o.r.a #22
Sheepshead minnow	DUPLICATION
Sheepshead minnow	MODERN SPECIES	238	RPTOR (ENSCVAG00000007480)	NPTX1 (ENSCVAG00000007192)	ENDOV (ENSCVAG00000007166)	SEC14L1 (ENSCVAG00000000946)	ENSCVAG00000007058	trim25 (ENSCVAG00000006966)	trim25 (ENSCVAG00000006949)	dgke (ENSCVAG00000006937)	si:dkey-31g6.6 (ENSCVAG00000006909)	cbx8b (ENSCVAG00000006904)	CBX4 (ENSCVAG00000006896)	ENSCVAG00000006885	TEX2 (ENSCVAG00000006859)	ENSCVAG00000006813	ENSCVAG00000006809 #22	ENSCVAG00000006806 #22
Sheepshead minnow	MODERN SPECIES	238	ENSCVAG00000007511	RPTOR (ENSCVAG00000007480)	NPTX1 (ENSCVAG00000007192)	ENDOV (ENSCVAG00000007166)	SEC14L1 (ENSCVAG00000000946)	ENSCVAG00000007058	trim25 (ENSCVAG00000006966)	trim25 (ENSCVAG00000006949)	dgke (ENSCVAG00000006937)	si:dkey-31g6.6 (ENSCVAG00000006909)	cbx8b (ENSCVAG00000006904)	CBX4 (ENSCVAG00000006896)	ENSCVAG00000006885	TEX2 (ENSCVAG00000006859)	ENSCVAG00000006813	ENSCVAG00000006809 #22	ENSCVAG00000006806 #22
Mummichog	MODERN SPECIES	2503	NPTX1 (ENSFHEG00000003063)	ENSFHEG00000003073	ENDOV (ENSFHEG00000003086)	SEC14L1 (ENSFHEG00000003131)	ENSFHEG00000003187	trim25 (ENSFHEG00000003198)	dgke (ENSFHEG00000003228)	si:dkey-31g6.6 (ENSFHEG00000003234)	cbx8b (ENSFHEG00000003236)	CBX4 (ENSFHEG00000003239)	ENSFHEG00000003257	ccdc40 (ENSFHEG00000003264)	ENSFHEG00000003276	ENSFHEG00000003282	ENSFHEG00000003290	ENSFHEG00000003293 #22
Poeciliinae	ANCESTRAL SPECIES	9	ENSGT00640000091541	ENSGT01060000248591.a.a.b.a.b	ENSGT00390000011880.b	ENSGT00940000155386.a	ENSGT00940000165433	ENSGT00940000164979.f.a	ENSGT00940000164979.f.b	ENSGT00940000158604	ENSGT00390000006555	ENSGT00940000158476.a	ENSGT00940000160081.c.a	ENSGT00940000160777	ENSGT00440000035688	ENSGT00390000000463.a	ENSGT00950000182933.B.b	ENSGT00530000063725.o.r.a #22	ENSGT00530000063725.o.r.b #22	ENSGT00940000157338.a	ENSGT00950000183035.b.f	ENSGT00940000163234.a.b.h.a.a.b	ENSGT00940000163234.a.b.h.a.b	ENSGT00940000163454.a.a.a.a	ENSGT00940000163454.a.a.b	ENSGT00950000183130.A	ENSGT00950000182915.a.a.b	ENSGT00390000008828.fb.b	ENSGT00950000183201.b.a.b	ENSGT00870000137155	ENSGT00950000183174.B.a.e	ENSGT00940000157090.h	ENSGT00940000154953.b
Poecilia	ANCESTRAL SPECIES	6	ENSGT00640000091541	ENSGT01060000248591.a.a.b.a.b	ENSGT00390000011880.b	ENSGT00940000155386.a	ENSGT00940000165433	ENSGT00940000164979.f.a	ENSGT00940000164979.f.b	ENSGT00940000158604	ENSGT00390000006555	ENSGT00940000158476.a	ENSGT00940000160081.c.a	ENSGT00940000160777	ENSGT00440000035688	ENSGT00390000000463.a	ENSGT00950000182933.B.b	ENSGT00530000063725.o.r.a #22	ENSGT00530000063725.o.r.b #22	ENSGT00940000157338.a	ENSGT00950000183035.b.f	ENSGT00940000163234.a.b.h.a.a.b	ENSGT00940000163234.a.b.h.a.b	ENSGT00940000163454.a.a.a.a	ENSGT00940000163454.a.a.b	ENSGT00950000183130.A	ENSGT00950000182915.a.a.b	ENSGT00390000008828.fb.b	ENSGT00950000183201.b.a.b	ENSGT00870000137155	ENSGT00950000183174.B.a.e	ENSGT00940000157090.h	ENSGT00940000154953.b
NAME_6	DUPLICATION
NAME_6	ANCESTRAL SPECIES	4	ENSGT00640000091541	ENSGT01060000248591.a.a.b.a.b	ENSGT00390000011880.b	ENSGT00940000155386.a	ENSGT00940000165433	ENSGT00940000164979.f.a	ENSGT00940000164979.f.b	ENSGT00940000158604	ENSGT00390000006555	ENSGT00940000158476.a	ENSGT00940000160081.c.a	ENSGT00940000160777	ENSGT00440000035688	ENSGT00390000000463.a	ENSGT00950000182933.B.b	ENSGT00530000063725.o.r.a.c #22	ENSGT00530000063725.o.r.a.d #22	ENSGT00530000063725.o.r.b #22	ENSGT00940000157338.a	ENSGT00950000183035.b.f	ENSGT00940000163234.a.b.h.a.a.b	ENSGT00940000163234.a.b.h.a.b	ENSGT00940000163454.a.a.a.a	ENSGT00940000163454.a.a.b	ENSGT00950000183130.A	ENSGT00950000182915.a.a.b	ENSGT00390000008828.fb.b	ENSGT00950000183201.b.a.b	ENSGT00870000137155	ENSGT00950000183174.B.a.e	ENSGT00940000157090.h
Sailfin molly	MODERN SPECIES	990									ENSPLAG00000022996	cbx8b (ENSPLAG00000023001)	ENSPLAG00000023004	ENSPLAG00000023134	ENSPLAG00000023170	TEX2 (ENSPLAG00000023176)	ENSPLAG00000023186	ENSPLAG00000023305 #22	ENSPLAG00000023786 #22	ENSPLAG00000024035 #22
Amazon molly	MODERN SPECIES	263	RPTOR (ENSPFOG00000016673)	NPTX1 (ENSPFOG00000016641)	ENDOV (ENSPFOG00000016616)	SEC14L1 (ENSPFOG00000016508)	ENSPFOG00000016501	trim25 (ENSPFOG00000016457)	trim25 (ENSPFOG00000024623)	dgke (ENSPFOG00000016451)	si:dkey-31g6.6 (ENSPFOG00000016450)	cbx8b (ENSPFOG00000016440)	CBX4 (ENSPFOG00000016429)	ENSPFOG00000016389	ccdc40 (ENSPFOG00000016336)	TEX2 (ENSPFOG00000016301)	ENSPFOG00000020693	ENSPFOG00000016293 #22	ENSPFOG00000022134 #22	AXIN2 (ENSPFOG00000016245)	ENSPFOG00000016191	ENSPFOG00000016114	ENSPFOG00000024783	ENSPFOG00000016094	ENSPFOG00000016048	exosc9 (ENSPFOG00000016008)	clgn (ENSPFOG00000015933)	scoca (ENSPFOG00000015912)	ENSPFOG00000015909	ENSPFOG00000015878	ENSPFOG00000022787	naa15b (ENSPFOG00000015774)	RAB33B (ENSPFOG00000022360)
NAME_6	ANCESTRAL SPECIES	4	ENSGT01060000248591.a.a.b.a.b	ENSGT00390000011880.b	ENSGT00940000155386.a	ENSGT00940000165433	ENSGT00940000164979.f.a	ENSGT00940000164979.f.b	ENSGT00940000158604	ENSGT00390000006555	ENSGT00940000158476.a	ENSGT00940000160081.c.a	ENSGT00940000160777	ENSGT00440000035688	ENSGT00390000000463.a	ENSGT00950000182933.B.b	ENSGT00530000063725.o.r.a.c #22	ENSGT00530000063725.o.r.a.d #22	ENSGT00530000063725.o.r.b #22	ENSGT00940000157338.a	ENSGT00950000183035.b.f	ENSGT00940000163234.a.b.h.a.a.b	ENSGT00940000163234.a.b.h.a.b	ENSGT00940000163454.a.a.a.a	ENSGT00940000163454.a.a.b	ENSGT00950000183130.A	ENSGT00950000182915.a.a.b	ENSGT00390000008828.fb.b	ENSGT00950000183201.b.a.b	ENSGT00870000137155	ENSGT00950000183174.B.a.e	ENSGT00940000157090.h	ENSGT00940000154953.b
Sailfin molly	MODERN SPECIES	990								ENSPLAG00000022996	cbx8b (ENSPLAG00000023001)	ENSPLAG00000023004	ENSPLAG00000023134	ENSPLAG00000023170	TEX2 (ENSPLAG00000023176)	ENSPLAG00000023186	ENSPLAG00000023305 #22	ENSPLAG00000023786 #22	ENSPLAG00000024035 #22
Amazon molly	MODERN SPECIES	112																ENSPFOG00000000879 #22
Platyfish	MODERN SPECIES	19	RPTOR (ENSXMAG00000017957)	NPTX1 (ENSXMAG00000017951)	ENDOV (ENSXMAG00000017948)	SEC14L1 (ENSXMAG00000017937)	ENSXMAG00000017931	trim25 (ENSXMAG00000017928)	ENSXMAG00000022885	dgke (ENSXMAG00000017923)	cbx8b (ENSXMAG00000021089)	si:dkey-31g6.6 (ENSXMAG00000017921)	CBX4 (ENSXMAG00000022788)	ENSXMAG00000017909	ccdc40 (ENSXMAG00000017901)	TEX2 (ENSXMAG00000017886)	ENSXMAG00000017884	ENSXMAG00000017882 #22	ENSXMAG00000022160 #22	AXIN2 (ENSXMAG00000017877)	ENSXMAG00000027929	ENSXMAG00000024366	ENSXMAG00000017850	ENSXMAG00000024968	exosc9 (ENSXMAG00000017823)	clgn (ENSXMAG00000017814)	scoca (ENSXMAG00000023569)	ENSXMAG00000024941	naa15b (ENSXMAG00000017774)	RAB33B (ENSXMAG00000023729)	elf2b (ENSXMAG00000017764)	NOCT (ENSXMAG00000017762)	ENSXMAG00000021130
Cyprinodontoidei	ANCESTRAL SPECIES	15	ENSGT01060000248591.a.a.b.a.b	ENSGT00390000011880.b	ENSGT00940000155386.a	ENSGT00940000165433	ENSGT00940000164979.f.a	ENSGT00940000164979.f.b	ENSGT00940000158604	ENSGT00390000006555	ENSGT00940000158476.a	ENSGT00940000160081.c.a	ENSGT00940000160777	ENSGT00440000035688	ENSGT00390000000463.a	ENSGT00950000182933.B.b	ENSGT00990000203866	ENSGT00530000063725.o.r.b #22	ENSGT00940000157338.a	ENSGT00950000183035.b.f	ENSGT00940000163234.a.b.h.a.a.b	ENSGT00940000163234.a.b.h.a.b	ENSGT00940000163454.a.a.a.a	ENSGT00940000163454.a.a.b	ENSGT00950000183130.A	ENSGT00950000182915.a.a.b	ENSGT00390000008828.fb.b	ENSGT00950000183201.b.a.b	ENSGT00870000137155	ENSGT00950000183174.B.a.e	ENSGT00940000157090.h	ENSGT00940000154953.b	ENSGT00940000155249.g
Poeciliinae	ANCESTRAL SPECIES	9	ENSGT01060000248591.a.a.b.a.b	ENSGT00390000011880.b	ENSGT00940000155386.a	ENSGT00940000165433	ENSGT00940000164979.f.a	ENSGT00940000164979.f.b	ENSGT00940000158604	ENSGT00390000006555	ENSGT00940000158476.a	ENSGT00940000160081.c.a	ENSGT00940000160777	ENSGT00440000035688	ENSGT00390000000463.a	ENSGT00950000182933.B.b	ENSGT00530000063725.o.r.a #22	ENSGT00530000063725.o.r.b #22	ENSGT00940000157338.a	ENSGT00950000183035.b.f	ENSGT00940000163234.a.b.h.a.a.b	ENSGT00940000163234.a.b.h.a.b	ENSGT00940000163454.a.a.a.a	ENSGT00940000163454.a.a.b	ENSGT00950000183130.A	ENSGT00950000182915.a.a.b	ENSGT00390000008828.fb.b	ENSGT00950000183201.b.a.b	ENSGT00870000137155	ENSGT00950000183174.B.a.e	ENSGT00940000157090.h	ENSGT00940000154953.b	ENSGT00940000155249.g
Platyfish	DUPLICATION
Platyfish	MODERN SPECIES	19	ENSXMAG00000005714	SOD3 (ENSXMAG00000005743)	ccdc149b (ENSXMAG00000005739)	lgi2b (ENSXMAG00000005745)	ENSXMAG00000023009	mttp (ENSXMAG00000005761)	tspan5b (ENSXMAG00000005800)	ACER2 (ENSXMAG00000005820)	rps6 (ENSXMAG00000005833)	ENSXMAG00000005840	SMU1 (ENSXMAG00000005844)	dnaja1 (ENSXMAG00000005855)	aptx (ENSXMAG00000022086)	sparcl1 (ENSXMAG00000005879)	odam (ENSXMAG00000005905)	ENSXMAG00000028631 #22	scpp5 (ENSXMAG00000028166)	cnga1a (ENSXMAG00000005912)	ENSXMAG00000025288	bdh2 (ENSXMAG00000025338)	ENSXMAG00000005936	cisd2 (ENSXMAG00000005961)	suclg1 (ENSXMAG00000005966)	ENSXMAG00000023963	LRRTM1 (ENSXMAG00000020008)	ctnna2 (ENSXMAG00000004800)	ADRA1D (ENSXMAG00000004797)	ENSXMAG00000020007	ENSXMAG00000026999	ENSXMAG00000024313	mettl14 (ENSXMAG00000017846)
Platyfish	MODERN SPECIES	19	NPTX1 (ENSXMAG00000017951)	ENDOV (ENSXMAG00000017948)	SEC14L1 (ENSXMAG00000017937)	ENSXMAG00000017931	trim25 (ENSXMAG00000017928)	ENSXMAG00000022885	dgke (ENSXMAG00000017923)	cbx8b (ENSXMAG00000021089)	si:dkey-31g6.6 (ENSXMAG00000017921)	CBX4 (ENSXMAG00000022788)	ENSXMAG00000017909	ccdc40 (ENSXMAG00000017901)	TEX2 (ENSXMAG00000017886)	ENSXMAG00000017884	ENSXMAG00000017882 #22	ENSXMAG00000022160 #22	AXIN2 (ENSXMAG00000017877)	ENSXMAG00000027929	ENSXMAG00000024366	ENSXMAG00000017850	ENSXMAG00000024968	exosc9 (ENSXMAG00000017823)	clgn (ENSXMAG00000017814)	scoca (ENSXMAG00000023569)	ENSXMAG00000024941	naa15b (ENSXMAG00000017774)	RAB33B (ENSXMAG00000023729)	elf2b (ENSXMAG00000017764)	NOCT (ENSXMAG00000017762)	ENSXMAG00000021130	ENSXMAG00000028290
Poecilia	ANCESTRAL SPECIES	6	ENSGT01060000248591.a.a.b.a.b	ENSGT00390000011880.b	ENSGT00940000155386.a	ENSGT00940000165433	ENSGT00940000164979.f.a	ENSGT00940000164979.f.b	ENSGT00940000158604	ENSGT00390000006555	ENSGT00940000158476.a	ENSGT00940000160081.c.a	ENSGT00940000160777	ENSGT00440000035688	ENSGT00390000000463.a	ENSGT00950000182933.B.b	ENSGT00530000063725.o.r.a #22	ENSGT00530000063725.o.r.b #22	ENSGT00940000157338.a	ENSGT00950000183035.b.f	ENSGT00940000163234.a.b.h.a.a.b	ENSGT00940000163234.a.b.h.a.b	ENSGT00940000163454.a.a.a.a	ENSGT00940000163454.a.a.b	ENSGT00950000183130.A	ENSGT00950000182915.a.a.b	ENSGT00390000008828.fb.b	ENSGT00950000183201.b.a.b	ENSGT00870000137155	ENSGT00950000183174.B.a.e	ENSGT00940000157090.h	ENSGT00940000154953.b	ENSGT00940000155249.g
NAME_6	ANCESTRAL SPECIES	4	ENSGT00390000011880.b	ENSGT00940000155386.a	ENSGT00940000165433	ENSGT00940000164979.f.a	ENSGT00940000164979.f.b	ENSGT00940000158604	ENSGT00390000006555	ENSGT00940000158476.a	ENSGT00940000160081.c.a	ENSGT00940000160777	ENSGT00440000035688	ENSGT00390000000463.a	ENSGT00950000182933.B.b	ENSGT00530000063725.o.r.a.c #22	ENSGT00530000063725.o.r.a.d #22	ENSGT00530000063725.o.r.b #22	ENSGT00940000157338.a	ENSGT00950000183035.b.f	ENSGT00940000163234.a.b.h.a.a.b	ENSGT00940000163234.a.b.h.a.b	ENSGT00940000163454.a.a.a.a	ENSGT00940000163454.a.a.b	ENSGT00950000183130.A	ENSGT00950000182915.a.a.b	ENSGT00390000008828.fb.b	ENSGT00950000183201.b.a.b	ENSGT00870000137155	ENSGT00950000183174.B.a.e	ENSGT00940000157090.h	ENSGT00940000154953.b	ENSGT00940000155249.g
Amazon molly	MODERN SPECIES	263	NPTX1 (ENSPFOG00000016641)	ENDOV (ENSPFOG00000016616)	SEC14L1 (ENSPFOG00000016508)	ENSPFOG00000016501	trim25 (ENSPFOG00000016457)	trim25 (ENSPFOG00000024623)	dgke (ENSPFOG00000016451)	si:dkey-31g6.6 (ENSPFOG00000016450)	cbx8b (ENSPFOG00000016440)	CBX4 (ENSPFOG00000016429)	ENSPFOG00000016389	ccdc40 (ENSPFOG00000016336)	TEX2 (ENSPFOG00000016301)	ENSPFOG00000020693	ENSPFOG00000016293 #22	ENSPFOG00000022134 #22	AXIN2 (ENSPFOG00000016245)	ENSPFOG00000016191	ENSPFOG00000016114	ENSPFOG00000024783	ENSPFOG00000016094	ENSPFOG00000016048	exosc9 (ENSPFOG00000016008)	clgn (ENSPFOG00000015933)	scoca (ENSPFOG00000015912)	ENSPFOG00000015909	ENSPFOG00000015878	ENSPFOG00000022787	naa15b (ENSPFOG00000015774)	RAB33B (ENSPFOG00000022360)	ENSPFOG00000022871
Sailfin molly	MODERN SPECIES	990							ENSPLAG00000022996	cbx8b (ENSPLAG00000023001)	ENSPLAG00000023004	ENSPLAG00000023134	ENSPLAG00000023170	TEX2 (ENSPLAG00000023176)	ENSPLAG00000023186	ENSPLAG00000023305 #22	ENSPLAG00000023786 #22	ENSPLAG00000024035 #22
NAME_4	ANCESTRAL SPECIES	164																ENSGT00530000063725.o.r.b #22	ENSGT00940000157338.a	ENSGT00950000183035.b.f	ENSGT00940000163234.a.b.h.a.b	ENSGT00940000163454.a.a.a.a	ENSGT00940000163454.a.a.b	ENSGT00950000183130.A	ENSGT00950000182915.a.a.b	ENSGT00390000008828.fb.b	ENSGT00950000183201.b.a.b	ENSGT00950000183174.B.a.e	ENSGT00940000157090.h	ENSGT00940000154953.b	ENSGT00940000155249.g	ENSGT00940000163186	ENSGT00940000157622.a.a
Mummichog	MODERN SPECIES	561																ENSFHEG00000019906 #22	AXIN2 (ENSFHEG00000019882)	ENSFHEG00000019869	ENSFHEG00000019832
Cyprinodontoidei	ANCESTRAL SPECIES																	ENSGT00530000063725.o.s #22
NAME_4	ANCESTRAL SPECIES																	ENSGT00530000063725.o.s #22
Mummichog	MODERN SPECIES	391								ENSFHEG00000012655	ENSFHEG00000012642	ENSFHEG00000012633	epoa (ENSFHEG00000012615)	ufsp1 (ENSFHEG00000012606)	pop7 (ENSFHEG00000012595)	ENSFHEG00000012589	ENSFHEG00000012576	PRF1 (ENSFHEG00000012568) #22	ENSFHEG00000012549	wrap53 (ENSFHEG00000012538)	efnb3b (ENSFHEG00000012517)
Poeciliinae	ANCESTRAL SPECIES																	ENSGT00530000063725.o.s #22
Platyfish	MODERN SPECIES	5	ENSXMAG00000025588	ENSXMAG00000008535	ENSXMAG00000021190	ENSXMAG00000028506	ENSXMAG00000026163	ENSXMAG00000028937	ENSXMAG00000024304	ENSXMAG00000023546	ENSXMAG00000030024	epoa (ENSXMAG00000029768)	pop7 (ENSXMAG00000019746)	ufsp1 (ENSXMAG00000019545)	ENSXMAG00000013607	ENSXMAG00000013605	ENSXMAG00000021219	ENSXMAG00000028032 #22	GIGYF1 (ENSXMAG00000013591)	wrap53 (ENSXMAG00000013589)	efnb3b (ENSXMAG00000029527)	serpinh2 (ENSXMAG00000013925)	ENSXMAG00000029654	ENSXMAG00000024006	ENSXMAG00000008982	KDM6B (ENSXMAG00000008979)	tmem88b (ENSXMAG00000008973)	ENSXMAG00000008970	tdrd7b (ENSXMAG00000008958)	dctn1a (ENSXMAG00000008912)	fam113 (ENSXMAG00000008907)	ENSXMAG00000022718	ENSXMAG00000027568
Ovalentaria_B	ANCESTRAL SPECIES	4	ENSGT00940000176115	ENSGT00940000168473	ENSGT00940000155386.a	ENSGT00940000165433	ENSGT00940000164979.f.a	ENSGT00940000164979.f.b	ENSGT00940000158604	ENSGT00390000006555	ENSGT00940000158476.a	ENSGT00940000160081.c.a	ENSGT00940000160777	ENSGT00440000035688	ENSGT00390000000463.a	ENSGT00950000182933.B.b	ENSGT00990000203866	ENSGT00530000063725.o #22	ENSGT00940000157338.a	ENSGT00950000183035.b.f	ENSGT00940000163234.a.b.h.a.a.b	ENSGT00940000163234.a.b.h.a.b	ENSGT00940000163454.a.a.a.a	ENSGT00940000163454.a.a.b	ENSGT00950000183130.A	ENSGT00950000182915.a.a.b	ENSGT00390000008828.fb.b	ENSGT00950000183201.b.a.b	ENSGT00950000183174.B.a.e	ENSGT00940000157090.h	ENSGT00990000203987	ENSGT00940000154953.b	ENSGT00940000155249.g
Pomacentridae	ANCESTRAL SPECIES	161									ENSGT00390000006555	ENSGT00940000158476.a	ENSGT00940000160081.c.a	ENSGT00940000160777	ENSGT00440000035688	ENSGT00390000000463.a	ENSGT00950000182933.B.b	ENSGT00530000063725.o #22	ENSGT00940000157338.a	ENSGT00950000183035.b.f	ENSGT00940000163234.a.b.h.a.a.b	ENSGT00940000163234.a.b.h.a.b	ENSGT00940000163454.a.a.a.a	ENSGT00940000163454.a.a.b	ENSGT00950000183130.A	ENSGT00950000182915.a.a.b	ENSGT00390000008828.fb.b	ENSGT00950000183201.b.a.b
Pomacentridae_A	ANCESTRAL SPECIES	13	ENSGT00940000171111.e	ENSGT00940000156045.b	ENSGT00940000157622.a.a	ENSGT00940000163186	ENSGT00940000177894	ENSGT00940000155249.g	ENSGT00940000154953.b	ENSGT00940000157090.h	ENSGT00390000006555	ENSGT00940000158476.a	ENSGT00940000160081.c.a	ENSGT00940000160777	ENSGT00440000035688	ENSGT00390000000463.a	ENSGT00950000182933.B.b	ENSGT00530000063725.o #22	ENSGT00940000157338.a	ENSGT00950000183035.b.f	ENSGT00940000163234.a.b.h.a.a.b	ENSGT00940000163234.a.b.h.a.b	ENSGT00940000163454.a.a.a.a	ENSGT00940000163454.a.a.b	ENSGT00950000183130.A	ENSGT00950000182915.a.a.b	ENSGT00390000008828.fb.b	ENSGT00950000183201.b.a.b	ENSGT00950000183174.B.a.e	ENSGT00550000075186	ENSGT00940000159603.b	ENSGT00940000157351	ENSGT01070000253837.c
Amphiprion	ANCESTRAL SPECIES		ENSGT00940000171111.e	ENSGT00940000156045.b	ENSGT00940000157622.a.a	ENSGT00940000163186	ENSGT00940000177894	ENSGT00940000155249.g	ENSGT00940000154953.b	ENSGT00940000157090.h	ENSGT00390000006555	ENSGT00940000158476.a	ENSGT00940000160081.c.a	ENSGT00940000160777	ENSGT00440000035688	ENSGT00390000000463.a	ENSGT00950000182933.B.b	ENSGT00530000063725.o #22	ENSGT00940000157338.a	ENSGT00950000183035.b.f	ENSGT00940000163234.a.b.h.a.a.b	ENSGT00940000163234.a.b.h.a.b	ENSGT00940000163454.a.a.a.a	ENSGT00940000163454.a.a.b.g	ENSGT00950000183130.A	ENSGT00950000182915.a.a.b	ENSGT00390000008828.fb.b	ENSGT00950000183201.b.a.b	ENSGT00950000183174.B.a.e	ENSGT00550000075186	ENSGT00940000159603.b	ENSGT00940000157351	ENSGT01070000253837.c
Clown anemonefish	MODERN SPECIES	1635									si:dkey-31g6.6 (ENSAOCG00000023081)	cbx8b (ENSAOCG00000023089)	CBX4 (ENSAOCG00000023097)	ENSAOCG00000023147	ccdc40 (ENSAOCG00000023211)	TEX2 (ENSAOCG00000023232)	ENSAOCG00000023237	prf1.2 (ENSAOCG00000023328) #22	AXIN2 (ENSAOCG00000023394)	ENSAOCG00000023430	ENSAOCG00000023506	ENSAOCG00000023532	ENSAOCG00000023550	ENSAOCG00000023575	exosc9 (ENSAOCG00000023602)	clgn (ENSAOCG00000023639)	scoca (ENSAOCG00000023654)	ENSAOCG00000023665	naa15b (ENSAOCG00000023893)	ENSAOCG00000023954
Orange clownfish	MODERN SPECIES	17	timm10 (ENSAPEG00000015725)	CTNND1 (ENSAPEG00000015682)	slc43a3a (ENSAPEG00000015579)	ENSAPEG00000015568	ENSAPEG00000015553	NOCT (ENSAPEG00000015529)	elf2b (ENSAPEG00000015458)	RAB33B (ENSAPEG00000015430)	si:dkey-31g6.6 (ENSAPEG00000015407)	cbx8b (ENSAPEG00000015391)	ENSAPEG00000015378	ENSAPEG00000015268	ccdc40 (ENSAPEG00000015226)	TEX2 (ENSAPEG00000015194)	ENSAPEG00000015181	prf1.2 (ENSAPEG00000015003) #22	AXIN2 (ENSAPEG00000014887)	ENSAPEG00000014812	ENSAPEG00000014650	ENSAPEG00000014483	ENSAPEG00000014464	ENSAPEG00000014452	exosc9 (ENSAPEG00000014416)	clgn (ENSAPEG00000014377)	scoca (ENSAPEG00000014359)	ENSAPEG00000014342	naa15b (ENSAPEG00000014226)	ENSAPEG00000014195	anapc11 (ENSAPEG00000014187)	ppp1r27b (ENSAPEG00000014175)	p4hb (ENSAPEG00000014138)
Spiny chromis	MODERN SPECIES	1168										cbx8b (ENSAPOG00000021711)	CBX4 (ENSAPOG00000021722)	ENSAPOG00000021754	ccdc40 (ENSAPOG00000021780)	TEX2 (ENSAPOG00000021839)	ENSAPOG00000021847	prf1.2 (ENSAPOG00000021864) #22
Bicolor damselfish	MODERN SPECIES	1927														TEX2 (ENSSPAG00000008823)	ENSSPAG00000008845	prf1.2 (ENSSPAG00000008851) #22
Cichlidae	ANCESTRAL SPECIES	3	ENSGT00940000154390.G.b.d	ENSGT01020000230338.a.a	ENSGT00950000182932.B.a	ENSGT00940000158505.n.b	ENSGT00940000164963.c.b	ENSGT00940000165124.d	ENSGT00530000063359.B	ENSGT00390000003068	ENSGT00940000171111.e	ENSGT00940000156045.b	ENSGT00940000160777	ENSGT00440000035688	ENSGT00390000000463.a	ENSGT00950000182933.B.b	ENSGT00990000203866	ENSGT00530000063725.o #22	ENSGT00940000157338.a	ENSGT00950000183035.b.f	ENSGT00940000163234.a.b.h.a.a.b	ENSGT00940000163234.a.b.h.a.a.a	ENSGT00940000163454.a.a.b	ENSGT00950000183130.A	ENSGT00950000182915.a.a.b	ENSGT00390000008828.fb.b	ENSGT00950000183201.b.a.b	ENSGT00950000183174.B.a.e	ENSGT00940000157090.h	ENSGT00990000203987	ENSGT00940000154953.b	ENSGT00940000155249.g	ENSGT00940000177894
Pseudocrenilabrinae	DUPLICATION
Pseudocrenilabrinae	DUPLICATION
Pseudocrenilabrinae	DUPLICATION
Pseudocrenilabrinae	ANCESTRAL SPECIES	3	ENSGT00950000182932.B.a	ENSGT00940000158505.n.b	ENSGT00940000164963.c.b	ENSGT00940000165124.d	ENSGT00530000063359.B	ENSGT00390000003068	ENSGT00940000171111.e	ENSGT00940000156045.b	ENSGT00940000160777	ENSGT00440000035688	ENSGT00390000000463.a	ENSGT00950000182933.B.b	ENSGT00990000203866	ENSGT00530000063725.o.t.b.a #22	ENSGT00530000063725.o.t.b.b #22	ENSGT00530000063725.o.t.a.a #22	ENSGT00530000063725.o.t.a.b #22	ENSGT00940000157338.a	ENSGT00950000183035.b.f	ENSGT00940000163234.a.b.h.a.a.b	ENSGT00940000163234.a.b.h.a.a.a	ENSGT00940000163454.a.a.b	ENSGT00950000183130.A	ENSGT00950000182915.a.a.b	ENSGT00390000008828.fb.b	ENSGT00950000183201.b.a.b	ENSGT00950000183174.B.a.e	ENSGT00940000157090.h	ENSGT00990000203987	ENSGT00940000154953.b	ENSGT00940000155249.g
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	5	ENSGT00950000182932.B.a	ENSGT00940000158505.n.b	ENSGT00940000164963.c.b	ENSGT00940000165124.d	ENSGT00530000063359.B	ENSGT00390000003068	ENSGT00940000171111.e	ENSGT00940000156045.b	ENSGT00940000160777	ENSGT00440000035688	ENSGT00390000000463.a	ENSGT00950000182933.B.b	ENSGT00990000203866	ENSGT00530000063725.o.t.b.a #22	ENSGT00530000063725.o.t.b.b #22	ENSGT00530000063725.o.t.a.a #22	ENSGT00530000063725.o.t.a.b #22	ENSGT00940000157338.a	ENSGT00950000183035.b.f	ENSGT00940000163234.a.b.h.a.a.b	ENSGT00940000163234.a.b.h.a.a.a	ENSGT00940000163454.a.a.b	ENSGT00950000183130.A	ENSGT00950000182915.a.a.b	ENSGT00390000008828.fb.b	ENSGT00950000183201.b.a.b	ENSGT00950000183174.B.a.e	ENSGT00940000157090.h	ENSGT00990000203987	ENSGT00940000154953.b	ENSGT00940000155249.g
Haplochromini	ANCESTRAL SPECIES	3	ENSGT00940000154390.G.b.d	ENSGT01020000230338.a.a	ENSGT00950000182932.B.a	ENSGT00940000158505.n.b	ENSGT00940000164963.c.b	ENSGT00940000165124.d	ENSGT00530000063359.B	ENSGT00390000003068	ENSGT00940000171111.e	ENSGT00940000156045.b	ENSGT00940000160777	ENSGT00440000035688	ENSGT00390000000463.a	ENSGT00950000182933.B.b	ENSGT00530000063725.o.t.b.a.b.a.a #22	ENSGT00530000063725.o.t.a.a #22	ENSGT00530000063725.o.t.a.b #22	ENSGT00940000157338.a	ENSGT00950000183035.b.f	ENSGT00940000163234.a.b.h.a.a.b	ENSGT00940000163234.a.b.h.a.a.a.c	ENSGT00940000163234.a.b.h.a.a.a.d	ENSGT00940000163454.a.a.b	ENSGT00950000183130.A	ENSGT00950000182915.a.a.b	ENSGT00390000008828.fb.b	ENSGT00950000183201.b.a.b	ENSGT00950000183174.B.a.e	ENSGT00940000157090.h	ENSGT00990000203987	ENSGT00940000154953.b
Burton s mouthbrooder	MODERN SPECIES	687									ENSHBUG00000013054	CTNND1 (ENSHBUG00000013022)	CARD14 (ENSHBUG00000012841)	ccdc40 (ENSHBUG00000012830)	TEX2 (ENSHBUG00000012819)	ENSHBUG00000000367	ENSHBUG00000012773 #22	ENSHBUG00000012746 #22	ENSHBUG00000012737 #22	AXIN2 (ENSHBUG00000012727)	ENSHBUG00000012681	ENSHBUG00000012672	ENSHBUG00000012652	ENSHBUG00000012639
Haplochromini_A	ANCESTRAL SPECIES	2	ENSGT00940000154390.G.b.d	ENSGT01020000230338.a.a	ENSGT00950000182932.B.a	ENSGT00940000158505.n.b	ENSGT00940000164963.c.b	ENSGT00940000165124.d	ENSGT00530000063359.B	ENSGT00390000003068	ENSGT00940000171111.e	ENSGT00940000156045.b	ENSGT00940000160777	ENSGT00440000035688	ENSGT00390000000463.a	ENSGT00950000182933.B.b	ENSGT00530000063725.o.t.b.a.b.a.a #22	ENSGT00530000063725.o.t.a.a #22	ENSGT00530000063725.o.t.a.b #22	ENSGT00940000157338.a	ENSGT00950000184095	ENSGT00950000183035.b.f	ENSGT00940000163234.a.b.h.a.a.b	ENSGT00940000163234.a.b.h.a.a.a.c	ENSGT00940000163234.a.b.h.a.a.a.d	ENSGT00940000163454.a.a.b	ENSGT00950000183130.A	ENSGT00950000182915.a.a.b	ENSGT00390000008828.fb.b	ENSGT00950000183201.b.a.b	ENSGT00950000183174.B.a.e	ENSGT00940000157090.h	ENSGT00990000203987
P. nyererei	MODERN SPECIES	370	URGCP (ENSPNYG00000004887)	ENSPNYG00000004872	ENSPNYG00000004859	rtn4rl2a (ENSPNYG00000004843)	ENSPNYG00000004765	ENSPNYG00000004745	unc93b1 (ENSPNYG00000004698)	timm10 (ENSPNYG00000004676)	CTNND1 (ENSPNYG00000004556)	CARD14 (ENSPNYG00000004431)	ENSPNYG00000004349	ENSPNYG00000004326	TEX2 (ENSPNYG00000004310)	ENSPNYG00000004302	ENSPNYG00000004244 #22	ENSPNYG00000004224 #22	ENSPNYG00000004210 #22	AXIN2 (ENSPNYG00000004181)	ENSPNYG00000004161	ENSPNYG00000004060	ENSPNYG00000003954	ENSPNYG00000003868	ENSPNYG00000003730	ENSPNYG00000003702	ENSPNYG00000003693	clgn (ENSPNYG00000003640)	scoca (ENSPNYG00000003623)	ENSPNYG00000003608	naa15b (ENSPNYG00000003539)	ENSPNYG00000003511	ENSPNYG00000003499
Haplochromini_B	ANCESTRAL SPECIES	23	ENSGT00940000164685.a	ENSGT01020000230338.a.a	ENSGT00950000182932.B.a	ENSGT00940000158505.n.b	ENSGT00940000164963.c.b	ENSGT00940000165124.d	ENSGT00530000063359.B	ENSGT00390000003068	ENSGT00940000171111.e	ENSGT00940000156045.b	ENSGT00940000160777	ENSGT00440000035688	ENSGT00390000000463.a	ENSGT00950000182933.B.b	ENSGT00530000063725.o.t.b.a.b.b #22	ENSGT00530000063725.o.t.a.a #22	ENSGT00530000063725.o.t.a.b #22	ENSGT00940000157338.a	ENSGT00950000184095	ENSGT00950000183035.b.f	ENSGT00940000163234.a.b.h.a.a.b	ENSGT00940000163234.a.b.h.a.a.a.c	ENSGT00940000163234.a.b.h.a.a.a.d	ENSGT00940000163454.a.a.b	ENSGT00950000183130.A	ENSGT00950000182915.a.a.b	ENSGT00390000008828.fb.b	ENSGT00950000183201.b.a.b	ENSGT00950000183174.B.a.e	ENSGT00940000157090.h	ENSGT00940000154953.b
Zebra mbuna	MODERN SPECIES	1109	cabp2a (ENSMZEG00005010905)	ENSMZEG00005010959	ENSMZEG00005010967	rtn4rl2a (ENSMZEG00005010974)	ENSMZEG00005010981	ENSMZEG00005010986	unc93b1 (ENSMZEG00005010999)	timm10 (ENSMZEG00005011010)	ENSMZEG00005011019	CTNND1 (ENSMZEG00005011052)	CARD14 (ENSMZEG00005011150)	ccdc40 (ENSMZEG00005011220)	TEX2 (ENSMZEG00005011243)	ENSMZEG00005011269	ENSMZEG00005011273 #22	PRF1 (ENSMZEG00005011276) #22	ENSMZEG00005011281 #22	AXIN2 (ENSMZEG00005011288)	ENSMZEG00005011302	ENSMZEG00005011308	ENSMZEG00005011323	ENSMZEG00005011339	ENSMZEG00005011367	ENSMZEG00005011438	ENSMZEG00005011448	exosc9 (ENSMZEG00005011461)	clgn (ENSMZEG00005011482)	scoca (ENSMZEG00005011510)	ENSMZEG00005011533	naa15b (ENSMZEG00005011551)	ENSMZEG00005011586
Eastern happy	MODERN SPECIES	18	rtn4rl2a (ENSACLG00000013388)	ENSACLG00000013378	ENSACLG00000013373	unc93b1 (ENSACLG00000012861)	timm10 (ENSACLG00000012849)	ENSACLG00000012828	CTNND1 (ENSACLG00000012763)	CARD14 (ENSACLG00000012728)	ccdc40 (ENSACLG00000012697)	TEX2 (ENSACLG00000012667)	ENSACLG00000012656	ENSACLG00000012546 #22	ENSACLG00000012422 #22	ENSACLG00000012408 #22	ENSACLG00000012258 #22	PRF1 (ENSACLG00000012116) #22	ENSACLG00000012017 #22	ENSACLG00000011985	AXIN2 (ENSACLG00000011830)	ENSACLG00000011809	ENSACLG00000011751	ENSACLG00000011732	ENSACLG00000011701	ENSACLG00000011497	ENSACLG00000011487	exosc9 (ENSACLG00000011471)	clgn (ENSACLG00000011446)	scoca (ENSACLG00000011441)	ENSACLG00000011431	naa15b (ENSACLG00000010983)	ENSACLG00000010965
Lyretail cichlid	MODERN SPECIES	308	cabp2a (ENSNBRG00000018336)	ENSNBRG00000018320	rtn4rl2a (ENSNBRG00000018300)	ENSNBRG00000018255	ENSNBRG00000018218	unc93b1 (ENSNBRG00000018180)	timm10 (ENSNBRG00000018157)	CTNND1 (ENSNBRG00000018124)	CARD14 (ENSNBRG00000017999)	ccdc40 (ENSNBRG00000017918)	TEX2 (ENSNBRG00000017884)	ENSNBRG00000017871	ENSNBRG00000017854	ENSNBRG00000017723 #22	PRF1 (ENSNBRG00000017578) #22	ENSNBRG00000017431 #22	ENSNBRG00000017358 #22	AXIN2 (ENSNBRG00000017315)	ENSNBRG00000017267	ENSNBRG00000017193	ENSNBRG00000017091
Nile tilapia	MODERN SPECIES	18	ENSONIG00000003459	rtn4rl2a (ENSONIG00000003457)	ENSONIG00000034199	ENSONIG00000003452	unc93b1 (ENSONIG00000003450)	timm10 (ENSONIG00000041552)	ENSONIG00000003448	CTNND1 (ENSONIG00000003447)	CARD14 (ENSONIG00000003444)	ENSONIG00000028364	ccdc40 (ENSONIG00000003441)	TEX2 (ENSONIG00000003436)	ENSONIG00000020622	ENSONIG00000003433 #22	ENSONIG00000003432 #22	ENSONIG00000003431 #22	ENSONIG00000003430 #22	AXIN2 (ENSONIG00000003426)	ENSONIG00000041816	ENSONIG00000003419	ENSONIG00000003414	ENSONIG00000042236	ENSONIG00000003408	exosc9 (ENSONIG00000003399)	clgn (ENSONIG00000003397)	scoca (ENSONIG00000028385)	naa15b (ENSONIG00000003372)	ENSONIG00000003367	elf2b (ENSONIG00000003360)	NOCT (ENSONIG00000038157)	ENSONIG00000036749
Pseudocrenilabrinae	ANCESTRAL SPECIES	3	ENSGT00940000158505.n.b	ENSGT00940000164963.c.b	ENSGT00940000165124.d	ENSGT00530000063359.B	ENSGT00390000003068	ENSGT00940000171111.e	ENSGT00940000156045.b	ENSGT00940000160777	ENSGT00440000035688	ENSGT00390000000463.a	ENSGT00950000182933.B.b	ENSGT00990000203866	ENSGT00530000063725.o.t.b.a #22	ENSGT00530000063725.o.t.b.b #22	ENSGT00530000063725.o.t.a.a #22	ENSGT00530000063725.o.t.a.b #22	ENSGT00940000157338.a	ENSGT00950000183035.b.f	ENSGT00940000163234.a.b.h.a.a.b	ENSGT00940000163234.a.b.h.a.a.a	ENSGT00940000163454.a.a.b	ENSGT00950000183130.A	ENSGT00950000182915.a.a.b	ENSGT00390000008828.fb.b	ENSGT00950000183201.b.a.b	ENSGT00950000183174.B.a.e	ENSGT00940000157090.h	ENSGT00990000203987	ENSGT00940000154953.b	ENSGT00940000155249.g	ENSGT00940000177894
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	5	ENSGT00940000158505.n.b	ENSGT00940000164963.c.b	ENSGT00940000165124.d	ENSGT00530000063359.B	ENSGT00390000003068	ENSGT00940000171111.e	ENSGT00940000156045.b	ENSGT00940000160777	ENSGT00440000035688	ENSGT00390000000463.a	ENSGT00950000182933.B.b	ENSGT00990000203866	ENSGT00530000063725.o.t.b.a #22	ENSGT00530000063725.o.t.b.b #22	ENSGT00530000063725.o.t.a.a #22	ENSGT00530000063725.o.t.a.b #22	ENSGT00940000157338.a	ENSGT00950000183035.b.f	ENSGT00940000163234.a.b.h.a.a.b	ENSGT00940000163234.a.b.h.a.a.a	ENSGT00940000163454.a.a.b	ENSGT00950000183130.A	ENSGT00950000182915.a.a.b	ENSGT00390000008828.fb.b	ENSGT00950000183201.b.a.b	ENSGT00950000183174.B.a.e	ENSGT00940000157090.h	ENSGT00990000203987	ENSGT00940000154953.b	ENSGT00940000155249.g	ENSGT00940000163186
Haplochromini	ANCESTRAL SPECIES	3	ENSGT01020000230338.a.a	ENSGT00950000182932.B.a	ENSGT00940000158505.n.b	ENSGT00940000164963.c.b	ENSGT00940000165124.d	ENSGT00530000063359.B	ENSGT00390000003068	ENSGT00940000171111.e	ENSGT00940000156045.b	ENSGT00940000160777	ENSGT00440000035688	ENSGT00390000000463.a	ENSGT00950000182933.B.b	ENSGT00530000063725.o.t.b.a.b.a.a #22	ENSGT00530000063725.o.t.a.a #22	ENSGT00530000063725.o.t.a.b #22	ENSGT00940000157338.a	ENSGT00950000183035.b.f	ENSGT00940000163234.a.b.h.a.a.b	ENSGT00940000163234.a.b.h.a.a.a.c	ENSGT00940000163234.a.b.h.a.a.a.d	ENSGT00940000163454.a.a.b	ENSGT00950000183130.A	ENSGT00950000182915.a.a.b	ENSGT00390000008828.fb.b	ENSGT00950000183201.b.a.b	ENSGT00950000183174.B.a.e	ENSGT00940000157090.h	ENSGT00990000203987	ENSGT00940000154953.b	ENSGT00940000155249.g
Burton s mouthbrooder	MODERN SPECIES	687								ENSHBUG00000013054	CTNND1 (ENSHBUG00000013022)	CARD14 (ENSHBUG00000012841)	ccdc40 (ENSHBUG00000012830)	TEX2 (ENSHBUG00000012819)	ENSHBUG00000000367	ENSHBUG00000012773 #22	ENSHBUG00000012746 #22	ENSHBUG00000012737 #22	AXIN2 (ENSHBUG00000012727)	ENSHBUG00000012681	ENSHBUG00000012672	ENSHBUG00000012652	ENSHBUG00000012639
Haplochromini_A	ANCESTRAL SPECIES	2	ENSGT01020000230338.a.a	ENSGT00950000182932.B.a	ENSGT00940000158505.n.b	ENSGT00940000164963.c.b	ENSGT00940000165124.d	ENSGT00530000063359.B	ENSGT00390000003068	ENSGT00940000171111.e	ENSGT00940000156045.b	ENSGT00940000160777	ENSGT00440000035688	ENSGT00390000000463.a	ENSGT00950000182933.B.b	ENSGT00530000063725.o.t.b.a.b.a.a #22	ENSGT00530000063725.o.t.a.a #22	ENSGT00530000063725.o.t.a.b #22	ENSGT00940000157338.a	ENSGT00950000184095	ENSGT00950000183035.b.f	ENSGT00940000163234.a.b.h.a.a.b	ENSGT00940000163234.a.b.h.a.a.a.c	ENSGT00940000163234.a.b.h.a.a.a.d	ENSGT00940000163454.a.a.b	ENSGT00950000183130.A	ENSGT00950000182915.a.a.b	ENSGT00390000008828.fb.b	ENSGT00950000183201.b.a.b	ENSGT00950000183174.B.a.e	ENSGT00940000157090.h	ENSGT00990000203987	ENSGT00940000154953.b
P. nyererei	MODERN SPECIES	370	ENSPNYG00000004872	ENSPNYG00000004859	rtn4rl2a (ENSPNYG00000004843)	ENSPNYG00000004765	ENSPNYG00000004745	unc93b1 (ENSPNYG00000004698)	timm10 (ENSPNYG00000004676)	CTNND1 (ENSPNYG00000004556)	CARD14 (ENSPNYG00000004431)	ENSPNYG00000004349	ENSPNYG00000004326	TEX2 (ENSPNYG00000004310)	ENSPNYG00000004302	ENSPNYG00000004244 #22	ENSPNYG00000004224 #22	ENSPNYG00000004210 #22	AXIN2 (ENSPNYG00000004181)	ENSPNYG00000004161	ENSPNYG00000004060	ENSPNYG00000003954	ENSPNYG00000003868	ENSPNYG00000003730	ENSPNYG00000003702	ENSPNYG00000003693	clgn (ENSPNYG00000003640)	scoca (ENSPNYG00000003623)	ENSPNYG00000003608	naa15b (ENSPNYG00000003539)	ENSPNYG00000003511	ENSPNYG00000003499	elf2b (ENSPNYG00000003464)
Haplochromini_B	ANCESTRAL SPECIES	23	ENSGT01020000230338.a.a	ENSGT00950000182932.B.a	ENSGT00940000158505.n.b	ENSGT00940000164963.c.b	ENSGT00940000165124.d	ENSGT00530000063359.B	ENSGT00390000003068	ENSGT00940000171111.e	ENSGT00940000156045.b	ENSGT00940000160777	ENSGT00440000035688	ENSGT00390000000463.a	ENSGT00950000182933.B.b	ENSGT00530000063725.o.t.b.a.b.b #22	ENSGT00530000063725.o.t.a.a #22	ENSGT00530000063725.o.t.a.b #22	ENSGT00940000157338.a	ENSGT00950000184095	ENSGT00950000183035.b.f	ENSGT00940000163234.a.b.h.a.a.b	ENSGT00940000163234.a.b.h.a.a.a.c	ENSGT00940000163234.a.b.h.a.a.a.d	ENSGT00940000163454.a.a.b	ENSGT00950000183130.A	ENSGT00950000182915.a.a.b	ENSGT00390000008828.fb.b	ENSGT00950000183201.b.a.b	ENSGT00950000183174.B.a.e	ENSGT00940000157090.h	ENSGT00940000154953.b	ENSGT00940000155249.g
Eastern happy	MODERN SPECIES	18	ENSACLG00000013378	ENSACLG00000013373	unc93b1 (ENSACLG00000012861)	timm10 (ENSACLG00000012849)	ENSACLG00000012828	CTNND1 (ENSACLG00000012763)	CARD14 (ENSACLG00000012728)	ccdc40 (ENSACLG00000012697)	TEX2 (ENSACLG00000012667)	ENSACLG00000012656	ENSACLG00000012546 #22	ENSACLG00000012422 #22	ENSACLG00000012408 #22	ENSACLG00000012258 #22	PRF1 (ENSACLG00000012116) #22	ENSACLG00000012017 #22	ENSACLG00000011985	AXIN2 (ENSACLG00000011830)	ENSACLG00000011809	ENSACLG00000011751	ENSACLG00000011732	ENSACLG00000011701	ENSACLG00000011497	ENSACLG00000011487	exosc9 (ENSACLG00000011471)	clgn (ENSACLG00000011446)	scoca (ENSACLG00000011441)	ENSACLG00000011431	naa15b (ENSACLG00000010983)	ENSACLG00000010965	elf2b (ENSACLG00000010872)
Zebra mbuna	MODERN SPECIES	1109	ENSMZEG00005010959	ENSMZEG00005010967	rtn4rl2a (ENSMZEG00005010974)	ENSMZEG00005010981	ENSMZEG00005010986	unc93b1 (ENSMZEG00005010999)	timm10 (ENSMZEG00005011010)	ENSMZEG00005011019	CTNND1 (ENSMZEG00005011052)	CARD14 (ENSMZEG00005011150)	ccdc40 (ENSMZEG00005011220)	TEX2 (ENSMZEG00005011243)	ENSMZEG00005011269	ENSMZEG00005011273 #22	PRF1 (ENSMZEG00005011276) #22	ENSMZEG00005011281 #22	AXIN2 (ENSMZEG00005011288)	ENSMZEG00005011302	ENSMZEG00005011308	ENSMZEG00005011323	ENSMZEG00005011339	ENSMZEG00005011367	ENSMZEG00005011438	ENSMZEG00005011448	exosc9 (ENSMZEG00005011461)	clgn (ENSMZEG00005011482)	scoca (ENSMZEG00005011510)	ENSMZEG00005011533	naa15b (ENSMZEG00005011551)	ENSMZEG00005011586	elf2b (ENSMZEG00005011602)
Lyretail cichlid	MODERN SPECIES	308	ENSNBRG00000018320	rtn4rl2a (ENSNBRG00000018300)	ENSNBRG00000018255	ENSNBRG00000018218	unc93b1 (ENSNBRG00000018180)	timm10 (ENSNBRG00000018157)	CTNND1 (ENSNBRG00000018124)	CARD14 (ENSNBRG00000017999)	ccdc40 (ENSNBRG00000017918)	TEX2 (ENSNBRG00000017884)	ENSNBRG00000017871	ENSNBRG00000017854	ENSNBRG00000017723 #22	PRF1 (ENSNBRG00000017578) #22	ENSNBRG00000017431 #22	ENSNBRG00000017358 #22	AXIN2 (ENSNBRG00000017315)	ENSNBRG00000017267	ENSNBRG00000017193	ENSNBRG00000017091
Nile tilapia	MODERN SPECIES	18	rtn4rl2a (ENSONIG00000003457)	ENSONIG00000034199	ENSONIG00000003452	unc93b1 (ENSONIG00000003450)	timm10 (ENSONIG00000041552)	ENSONIG00000003448	CTNND1 (ENSONIG00000003447)	CARD14 (ENSONIG00000003444)	ENSONIG00000028364	ccdc40 (ENSONIG00000003441)	TEX2 (ENSONIG00000003436)	ENSONIG00000020622	ENSONIG00000003433 #22	ENSONIG00000003432 #22	ENSONIG00000003431 #22	ENSONIG00000003430 #22	AXIN2 (ENSONIG00000003426)	ENSONIG00000041816	ENSONIG00000003419	ENSONIG00000003414	ENSONIG00000042236	ENSONIG00000003408	exosc9 (ENSONIG00000003399)	clgn (ENSONIG00000003397)	scoca (ENSONIG00000028385)	naa15b (ENSONIG00000003372)	ENSONIG00000003367	elf2b (ENSONIG00000003360)	NOCT (ENSONIG00000038157)	ENSONIG00000036749	slc43a3a (ENSONIG00000003351)
Pseudocrenilabrinae	DUPLICATION
Pseudocrenilabrinae	ANCESTRAL SPECIES	3	ENSGT00940000154390.G.b.d	ENSGT01020000230338.a.a	ENSGT00950000182932.B.a	ENSGT00940000158505.n.b	ENSGT00940000164963.c.b	ENSGT00940000165124.d	ENSGT00530000063359.B	ENSGT00390000003068	ENSGT00940000171111.e	ENSGT00940000156045.b	ENSGT00940000160777	ENSGT00440000035688	ENSGT00390000000463.a	ENSGT00950000182933.B.b	ENSGT00990000203866	ENSGT00530000063725.o.t.b.a #22	ENSGT00530000063725.o.t.b.b #22	ENSGT00530000063725.o.t.a.a #22	ENSGT00530000063725.o.t.a.b #22	ENSGT00940000157338.a	ENSGT00950000183035.b.f	ENSGT00940000163234.a.b.h.a.a.b	ENSGT00940000163234.a.b.h.a.a.a	ENSGT00940000163454.a.a.b	ENSGT00950000183130.A	ENSGT00950000182915.a.a.b	ENSGT00390000008828.fb.b	ENSGT00950000183201.b.a.b	ENSGT00950000183174.B.a.e	ENSGT00940000157090.h	ENSGT00990000203987
Nile tilapia	MODERN SPECIES	18	ENSONIG00000034098	ENSONIG00000003461	ENSONIG00000003459	rtn4rl2a (ENSONIG00000003457)	ENSONIG00000034199	ENSONIG00000003452	unc93b1 (ENSONIG00000003450)	timm10 (ENSONIG00000041552)	ENSONIG00000003448	CTNND1 (ENSONIG00000003447)	CARD14 (ENSONIG00000003444)	ENSONIG00000028364	ccdc40 (ENSONIG00000003441)	TEX2 (ENSONIG00000003436)	ENSONIG00000020622	ENSONIG00000003433 #22	ENSONIG00000003432 #22	ENSONIG00000003431 #22	ENSONIG00000003430 #22	AXIN2 (ENSONIG00000003426)	ENSONIG00000041816	ENSONIG00000003419	ENSONIG00000003414	ENSONIG00000042236	ENSONIG00000003408	exosc9 (ENSONIG00000003399)	clgn (ENSONIG00000003397)	scoca (ENSONIG00000028385)	naa15b (ENSONIG00000003372)	ENSONIG00000003367	elf2b (ENSONIG00000003360)
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	5	ENSGT00940000154390.G.b.d	ENSGT01020000230338.a.a	ENSGT00950000182932.B.a	ENSGT00940000158505.n.b	ENSGT00940000164963.c.b	ENSGT00940000165124.d	ENSGT00530000063359.B	ENSGT00390000003068	ENSGT00940000171111.e	ENSGT00940000156045.b	ENSGT00940000160777	ENSGT00440000035688	ENSGT00390000000463.a	ENSGT00950000182933.B.b	ENSGT00990000203866	ENSGT00530000063725.o.t.b.a #22	ENSGT00530000063725.o.t.b.b #22	ENSGT00530000063725.o.t.a.a #22	ENSGT00530000063725.o.t.a.b #22	ENSGT00940000157338.a	ENSGT00950000183035.b.f	ENSGT00940000163234.a.b.h.a.a.b	ENSGT00940000163234.a.b.h.a.a.a	ENSGT00940000163454.a.a.b	ENSGT00950000183130.A	ENSGT00950000182915.a.a.b	ENSGT00390000008828.fb.b	ENSGT00950000183201.b.a.b	ENSGT00950000183174.B.a.e	ENSGT00940000157090.h	ENSGT00990000203987
Lyretail cichlid	MODERN SPECIES	308	ENSNBRG00000018361	ENSNBRG00000018347	cabp2a (ENSNBRG00000018336)	ENSNBRG00000018320	rtn4rl2a (ENSNBRG00000018300)	ENSNBRG00000018255	ENSNBRG00000018218	unc93b1 (ENSNBRG00000018180)	timm10 (ENSNBRG00000018157)	CTNND1 (ENSNBRG00000018124)	CARD14 (ENSNBRG00000017999)	ccdc40 (ENSNBRG00000017918)	TEX2 (ENSNBRG00000017884)	ENSNBRG00000017871	ENSNBRG00000017854	ENSNBRG00000017723 #22	PRF1 (ENSNBRG00000017578) #22	ENSNBRG00000017431 #22	ENSNBRG00000017358 #22	AXIN2 (ENSNBRG00000017315)	ENSNBRG00000017267	ENSNBRG00000017193	ENSNBRG00000017091
Haplochromini	DUPLICATION
Haplochromini	ANCESTRAL SPECIES																	ENSGT00530000063725.o.t.b.a.a #22
Haplochromini_A	ANCESTRAL SPECIES																	ENSGT00530000063725.o.t.b.a.a #22
Haplochromini_B	ANCESTRAL SPECIES																	ENSGT00530000063725.o.t.b.a.a #22
Eastern happy	DUPLICATION
Eastern happy	MODERN SPECIES	18	cabp2a (ENSACLG00000013421)	ENSACLG00000013412	ENSACLG00000013396	rtn4rl2a (ENSACLG00000013388)	ENSACLG00000013378	ENSACLG00000013373	unc93b1 (ENSACLG00000012861)	timm10 (ENSACLG00000012849)	ENSACLG00000012828	CTNND1 (ENSACLG00000012763)	CARD14 (ENSACLG00000012728)	ccdc40 (ENSACLG00000012697)	TEX2 (ENSACLG00000012667)	ENSACLG00000012656	ENSACLG00000012546 #22	ENSACLG00000012422 #22	ENSACLG00000012408 #22	ENSACLG00000012258 #22	PRF1 (ENSACLG00000012116) #22	ENSACLG00000012017 #22	ENSACLG00000011985	AXIN2 (ENSACLG00000011830)	ENSACLG00000011809	ENSACLG00000011751	ENSACLG00000011732	ENSACLG00000011701	ENSACLG00000011497	ENSACLG00000011487	exosc9 (ENSACLG00000011471)	clgn (ENSACLG00000011446)	scoca (ENSACLG00000011441)
Eastern happy	MODERN SPECIES	18	ENSACLG00000013412	ENSACLG00000013396	rtn4rl2a (ENSACLG00000013388)	ENSACLG00000013378	ENSACLG00000013373	unc93b1 (ENSACLG00000012861)	timm10 (ENSACLG00000012849)	ENSACLG00000012828	CTNND1 (ENSACLG00000012763)	CARD14 (ENSACLG00000012728)	ccdc40 (ENSACLG00000012697)	TEX2 (ENSACLG00000012667)	ENSACLG00000012656	ENSACLG00000012546 #22	ENSACLG00000012422 #22	ENSACLG00000012408 #22	ENSACLG00000012258 #22	PRF1 (ENSACLG00000012116) #22	ENSACLG00000012017 #22	ENSACLG00000011985	AXIN2 (ENSACLG00000011830)	ENSACLG00000011809	ENSACLG00000011751	ENSACLG00000011732	ENSACLG00000011701	ENSACLG00000011497	ENSACLG00000011487	exosc9 (ENSACLG00000011471)	clgn (ENSACLG00000011446)	scoca (ENSACLG00000011441)	ENSACLG00000011431
Haplochromini	DUPLICATION
Haplochromini	DUPLICATION
Haplochromini	ANCESTRAL SPECIES	3	ENSGT00940000164685.a	ENSGT00940000154390.G.b.d	ENSGT01020000230338.a.a	ENSGT00950000182932.B.a	ENSGT00940000158505.n.b	ENSGT00940000164963.c.b	ENSGT00940000165124.d	ENSGT00530000063359.B	ENSGT00390000003068	ENSGT00940000171111.e	ENSGT00940000156045.b	ENSGT00940000160777	ENSGT00440000035688	ENSGT00390000000463.a	ENSGT00950000182933.B.b	ENSGT00530000063725.o.t.b.a.b.a.a #22	ENSGT00530000063725.o.t.a.a #22	ENSGT00530000063725.o.t.a.b #22	ENSGT00940000157338.a	ENSGT00950000183035.b.f	ENSGT00940000163234.a.b.h.a.a.b	ENSGT00940000163234.a.b.h.a.a.a.c	ENSGT00940000163234.a.b.h.a.a.a.d	ENSGT00940000163454.a.a.b	ENSGT00950000183130.A	ENSGT00950000182915.a.a.b	ENSGT00390000008828.fb.b	ENSGT00950000183201.b.a.b	ENSGT00950000183174.B.a.e	ENSGT00940000157090.h	ENSGT00990000203987
Burton s mouthbrooder	MODERN SPECIES	687										ENSHBUG00000013054	CTNND1 (ENSHBUG00000013022)	CARD14 (ENSHBUG00000012841)	ccdc40 (ENSHBUG00000012830)	TEX2 (ENSHBUG00000012819)	ENSHBUG00000000367	ENSHBUG00000012773 #22	ENSHBUG00000012746 #22	ENSHBUG00000012737 #22	AXIN2 (ENSHBUG00000012727)	ENSHBUG00000012681	ENSHBUG00000012672	ENSHBUG00000012652	ENSHBUG00000012639
Haplochromini_A	ANCESTRAL SPECIES	2	ENSGT00940000164685.a	ENSGT00940000154390.G.b.d	ENSGT01020000230338.a.a	ENSGT00950000182932.B.a	ENSGT00940000158505.n.b	ENSGT00940000164963.c.b	ENSGT00940000165124.d	ENSGT00530000063359.B	ENSGT00390000003068	ENSGT00940000171111.e	ENSGT00940000156045.b	ENSGT00940000160777	ENSGT00440000035688	ENSGT00390000000463.a	ENSGT00950000182933.B.b	ENSGT00530000063725.o.t.b.a.b.a.a #22	ENSGT00530000063725.o.t.a.a #22	ENSGT00530000063725.o.t.a.b #22	ENSGT00940000157338.a	ENSGT00950000184095	ENSGT00950000183035.b.f	ENSGT00940000163234.a.b.h.a.a.b	ENSGT00940000163234.a.b.h.a.a.a.c	ENSGT00940000163234.a.b.h.a.a.a.d	ENSGT00940000163454.a.a.b	ENSGT00950000183130.A	ENSGT00950000182915.a.a.b	ENSGT00390000008828.fb.b	ENSGT00950000183201.b.a.b	ENSGT00950000183174.B.a.e	ENSGT00940000157090.h
Haplochromini_B	ANCESTRAL SPECIES																	ENSGT00530000063725.o.t.b.a.b.a.a #22
Eastern happy	MODERN SPECIES	18	PTGDR2 (ENSACLG00000013431)	cabp2a (ENSACLG00000013421)	ENSACLG00000013412	ENSACLG00000013396	rtn4rl2a (ENSACLG00000013388)	ENSACLG00000013378	ENSACLG00000013373	unc93b1 (ENSACLG00000012861)	timm10 (ENSACLG00000012849)	ENSACLG00000012828	CTNND1 (ENSACLG00000012763)	CARD14 (ENSACLG00000012728)	ccdc40 (ENSACLG00000012697)	TEX2 (ENSACLG00000012667)	ENSACLG00000012656	ENSACLG00000012546 #22	ENSACLG00000012422 #22	ENSACLG00000012408 #22	ENSACLG00000012258 #22	PRF1 (ENSACLG00000012116) #22	ENSACLG00000012017 #22	ENSACLG00000011985	AXIN2 (ENSACLG00000011830)	ENSACLG00000011809	ENSACLG00000011751	ENSACLG00000011732	ENSACLG00000011701	ENSACLG00000011497	ENSACLG00000011487	exosc9 (ENSACLG00000011471)	clgn (ENSACLG00000011446)
P. nyererei	DUPLICATION
P. nyererei	MODERN SPECIES	370	cabp2a (ENSPNYG00000004907)	URGCP (ENSPNYG00000004887)	ENSPNYG00000004872	ENSPNYG00000004859	rtn4rl2a (ENSPNYG00000004843)	ENSPNYG00000004765	ENSPNYG00000004745	unc93b1 (ENSPNYG00000004698)	timm10 (ENSPNYG00000004676)	CTNND1 (ENSPNYG00000004556)	CARD14 (ENSPNYG00000004431)	ENSPNYG00000004349	ENSPNYG00000004326	TEX2 (ENSPNYG00000004310)	ENSPNYG00000004302	ENSPNYG00000004244 #22	ENSPNYG00000004224 #22	ENSPNYG00000004210 #22	AXIN2 (ENSPNYG00000004181)	ENSPNYG00000004161	ENSPNYG00000004060	ENSPNYG00000003954	ENSPNYG00000003868	ENSPNYG00000003730	ENSPNYG00000003702	ENSPNYG00000003693	clgn (ENSPNYG00000003640)	scoca (ENSPNYG00000003623)	ENSPNYG00000003608	naa15b (ENSPNYG00000003539)	ENSPNYG00000003511
P. nyererei	MODERN SPECIES	285																ENSPNYG00000006222 #22
Haplochromini	ANCESTRAL SPECIES																	ENSGT00530000063725.o.t.b.a.b.a.b #22
Haplochromini_A	ANCESTRAL SPECIES																	ENSGT00530000063725.o.t.b.a.b.a.b #22
Haplochromini_B	ANCESTRAL SPECIES																	ENSGT00530000063725.o.t.b.a.b.a.b #22
Eastern happy	MODERN SPECIES	18	ENSACLG00000013396	rtn4rl2a (ENSACLG00000013388)	ENSACLG00000013378	ENSACLG00000013373	unc93b1 (ENSACLG00000012861)	timm10 (ENSACLG00000012849)	ENSACLG00000012828	CTNND1 (ENSACLG00000012763)	CARD14 (ENSACLG00000012728)	ccdc40 (ENSACLG00000012697)	TEX2 (ENSACLG00000012667)	ENSACLG00000012656	ENSACLG00000012546 #22	ENSACLG00000012422 #22	ENSACLG00000012408 #22	ENSACLG00000012258 #22	PRF1 (ENSACLG00000012116) #22	ENSACLG00000012017 #22	ENSACLG00000011985	AXIN2 (ENSACLG00000011830)	ENSACLG00000011809	ENSACLG00000011751	ENSACLG00000011732	ENSACLG00000011701	ENSACLG00000011497	ENSACLG00000011487	exosc9 (ENSACLG00000011471)	clgn (ENSACLG00000011446)	scoca (ENSACLG00000011441)	ENSACLG00000011431	naa15b (ENSACLG00000010983)
Haplochromini	ANCESTRAL SPECIES																	ENSGT00530000063725.o.t.b.a.b.b #22
Haplochromini_A	ANCESTRAL SPECIES																	ENSGT00530000063725.o.t.b.a.b.b #22
Haplochromini_B	ANCESTRAL SPECIES	23	ENSGT00940000162009.b	ENSGT00940000164685.a	ENSGT01020000230338.a.a	ENSGT00950000182932.B.a	ENSGT00940000158505.n.b	ENSGT00940000164963.c.b	ENSGT00940000165124.d	ENSGT00530000063359.B	ENSGT00390000003068	ENSGT00940000171111.e	ENSGT00940000156045.b	ENSGT00940000160777	ENSGT00440000035688	ENSGT00390000000463.a	ENSGT00950000182933.B.b	ENSGT00530000063725.o.t.b.a.b.b #22	ENSGT00530000063725.o.t.a.a #22	ENSGT00530000063725.o.t.a.b #22	ENSGT00940000157338.a	ENSGT00950000184095	ENSGT00950000183035.b.f	ENSGT00940000163234.a.b.h.a.a.b	ENSGT00940000163234.a.b.h.a.a.a.c	ENSGT00940000163234.a.b.h.a.a.a.d	ENSGT00940000163454.a.a.b	ENSGT00950000183130.A	ENSGT00950000182915.a.a.b	ENSGT00390000008828.fb.b	ENSGT00950000183201.b.a.b	ENSGT00950000183174.B.a.e	ENSGT00940000157090.h
Zebra mbuna	MODERN SPECIES	1109	PTGDR2 (ENSMZEG00005010895)	cabp2a (ENSMZEG00005010905)	ENSMZEG00005010959	ENSMZEG00005010967	rtn4rl2a (ENSMZEG00005010974)	ENSMZEG00005010981	ENSMZEG00005010986	unc93b1 (ENSMZEG00005010999)	timm10 (ENSMZEG00005011010)	ENSMZEG00005011019	CTNND1 (ENSMZEG00005011052)	CARD14 (ENSMZEG00005011150)	ccdc40 (ENSMZEG00005011220)	TEX2 (ENSMZEG00005011243)	ENSMZEG00005011269	ENSMZEG00005011273 #22	PRF1 (ENSMZEG00005011276) #22	ENSMZEG00005011281 #22	AXIN2 (ENSMZEG00005011288)	ENSMZEG00005011302	ENSMZEG00005011308	ENSMZEG00005011323	ENSMZEG00005011339	ENSMZEG00005011367	ENSMZEG00005011438	ENSMZEG00005011448	exosc9 (ENSMZEG00005011461)	clgn (ENSMZEG00005011482)	scoca (ENSMZEG00005011510)	ENSMZEG00005011533	naa15b (ENSMZEG00005011551)
Pseudocrenilabrinae	ANCESTRAL SPECIES	3	ENSGT01020000230338.a.a	ENSGT00950000182932.B.a	ENSGT00940000158505.n.b	ENSGT00940000164963.c.b	ENSGT00940000165124.d	ENSGT00530000063359.B	ENSGT00390000003068	ENSGT00940000171111.e	ENSGT00940000156045.b	ENSGT00940000160777	ENSGT00440000035688	ENSGT00390000000463.a	ENSGT00950000182933.B.b	ENSGT00990000203866	ENSGT00530000063725.o.t.b.a #22	ENSGT00530000063725.o.t.b.b #22	ENSGT00530000063725.o.t.a.a #22	ENSGT00530000063725.o.t.a.b #22	ENSGT00940000157338.a	ENSGT00950000183035.b.f	ENSGT00940000163234.a.b.h.a.a.b	ENSGT00940000163234.a.b.h.a.a.a	ENSGT00940000163454.a.a.b	ENSGT00950000183130.A	ENSGT00950000182915.a.a.b	ENSGT00390000008828.fb.b	ENSGT00950000183201.b.a.b	ENSGT00950000183174.B.a.e	ENSGT00940000157090.h	ENSGT00990000203987	ENSGT00940000154953.b
Nile tilapia	MODERN SPECIES	18	ENSONIG00000003461	ENSONIG00000003459	rtn4rl2a (ENSONIG00000003457)	ENSONIG00000034199	ENSONIG00000003452	unc93b1 (ENSONIG00000003450)	timm10 (ENSONIG00000041552)	ENSONIG00000003448	CTNND1 (ENSONIG00000003447)	CARD14 (ENSONIG00000003444)	ENSONIG00000028364	ccdc40 (ENSONIG00000003441)	TEX2 (ENSONIG00000003436)	ENSONIG00000020622	ENSONIG00000003433 #22	ENSONIG00000003432 #22	ENSONIG00000003431 #22	ENSONIG00000003430 #22	AXIN2 (ENSONIG00000003426)	ENSONIG00000041816	ENSONIG00000003419	ENSONIG00000003414	ENSONIG00000042236	ENSONIG00000003408	exosc9 (ENSONIG00000003399)	clgn (ENSONIG00000003397)	scoca (ENSONIG00000028385)	naa15b (ENSONIG00000003372)	ENSONIG00000003367	elf2b (ENSONIG00000003360)	NOCT (ENSONIG00000038157)
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	5	ENSGT01020000230338.a.a	ENSGT00950000182932.B.a	ENSGT00940000158505.n.b	ENSGT00940000164963.c.b	ENSGT00940000165124.d	ENSGT00530000063359.B	ENSGT00390000003068	ENSGT00940000171111.e	ENSGT00940000156045.b	ENSGT00940000160777	ENSGT00440000035688	ENSGT00390000000463.a	ENSGT00950000182933.B.b	ENSGT00990000203866	ENSGT00530000063725.o.t.b.a #22	ENSGT00530000063725.o.t.b.b #22	ENSGT00530000063725.o.t.a.a #22	ENSGT00530000063725.o.t.a.b #22	ENSGT00940000157338.a	ENSGT00950000183035.b.f	ENSGT00940000163234.a.b.h.a.a.b	ENSGT00940000163234.a.b.h.a.a.a	ENSGT00940000163454.a.a.b	ENSGT00950000183130.A	ENSGT00950000182915.a.a.b	ENSGT00390000008828.fb.b	ENSGT00950000183201.b.a.b	ENSGT00950000183174.B.a.e	ENSGT00940000157090.h	ENSGT00990000203987	ENSGT00940000154953.b
Lyretail cichlid	MODERN SPECIES	308	ENSNBRG00000018347	cabp2a (ENSNBRG00000018336)	ENSNBRG00000018320	rtn4rl2a (ENSNBRG00000018300)	ENSNBRG00000018255	ENSNBRG00000018218	unc93b1 (ENSNBRG00000018180)	timm10 (ENSNBRG00000018157)	CTNND1 (ENSNBRG00000018124)	CARD14 (ENSNBRG00000017999)	ccdc40 (ENSNBRG00000017918)	TEX2 (ENSNBRG00000017884)	ENSNBRG00000017871	ENSNBRG00000017854	ENSNBRG00000017723 #22	PRF1 (ENSNBRG00000017578) #22	ENSNBRG00000017431 #22	ENSNBRG00000017358 #22	AXIN2 (ENSNBRG00000017315)	ENSNBRG00000017267	ENSNBRG00000017193	ENSNBRG00000017091
Pseudocrenilabrinae	ANCESTRAL SPECIES																	ENSGT00530000063725.o.u #22
Pseudocrenilabrinae_A	ANCESTRAL SPECIES																	ENSGT00530000063725.o.u #22
Haplochromini	ANCESTRAL SPECIES	12	ENSGT00390000017397	ENSGT00930000151196.b	ENSGT00390000004520	ENSGT00940000160092.B	ENSGT00940000160261.g	ENSGT00940000160439	ENSGT00940000161770	ENSGT00950000182973.b.b.c	ENSGT00940000153561.b.a.b.a.a	ENSGT00940000161700	ENSGT00940000164151.a.b	ENSGT00920000149270	ENSGT00940000160628	ENSGT00940000157978.a	ENSGT00940000164067.B.e.b	ENSGT00530000063725.o.u #22	ENSGT00940000164067.B.f	ENSGT00940000154612	ENSGT00390000009109	ENSGT00730000114636	ENSGT00940000154348.c.a.a.p	ENSGT00390000018316.a.f	ENSGT00940000166194	ENSGT00390000000050	ENSGT00630000091000	ENSGT00520000055626.b	ENSGT00390000012483	ENSGT00940000164923.a.b	ENSGT00940000159038.a.b	ENSGT00940000159805	ENSGT00940000160236
Haplochromini_A	ANCESTRAL SPECIES																	ENSGT00530000063725.o.u #22
P. nyererei	DUPLICATION
P. nyererei	MODERN SPECIES	313	zgc:195001 (ENSPNYG00000015897)	emc10 (ENSPNYG00000015840)	mybpc2a (ENSPNYG00000015784)	LRRC4B (ENSPNYG00000015772)	med25 (ENSPNYG00000015750)	SYT3 (ENSPNYG00000015716)	ENSPNYG00000015700	SHANK1 (ENSPNYG00000014888)	ENSPNYG00000014570	ppp1caa (ENSPNYG00000014556)	cldni (ENSPNYG00000014541)	coro1a (ENSPNYG00000014515)	paqr4a (ENSPNYG00000014494)	ENSPNYG00000014458	ENSPNYG00000014448 #22	ENSPNYG00000014437 #22	ENSPNYG00000014399	cox6a2 (ENSPNYG00000014378)	ENSPNYG00000014347	ENSPNYG00000014330	ENSPNYG00000014318	elob (ENSPNYG00000014299)	ENSPNYG00000014285	rusf1 (ENSPNYG00000014245)	cd2bp2 (ENSPNYG00000014232)	pheta2 (ENSPNYG00000014216)	mylpfa (ENSPNYG00000014202)	tbc1d10b (ENSPNYG00000014180)	hsd3b7 (ENSPNYG00000014165)	ENSPNYG00000014139	ccdc47 (ENSPNYG00000014112)
P. nyererei	MODERN SPECIES	313	ENSPNYG00000015901	zgc:195001 (ENSPNYG00000015897)	emc10 (ENSPNYG00000015840)	mybpc2a (ENSPNYG00000015784)	LRRC4B (ENSPNYG00000015772)	med25 (ENSPNYG00000015750)	SYT3 (ENSPNYG00000015716)	ENSPNYG00000015700	SHANK1 (ENSPNYG00000014888)	ENSPNYG00000014570	ppp1caa (ENSPNYG00000014556)	cldni (ENSPNYG00000014541)	coro1a (ENSPNYG00000014515)	paqr4a (ENSPNYG00000014494)	ENSPNYG00000014458	ENSPNYG00000014448 #22	ENSPNYG00000014437 #22	ENSPNYG00000014399	cox6a2 (ENSPNYG00000014378)	ENSPNYG00000014347	ENSPNYG00000014330	ENSPNYG00000014318	elob (ENSPNYG00000014299)	ENSPNYG00000014285	rusf1 (ENSPNYG00000014245)	cd2bp2 (ENSPNYG00000014232)	pheta2 (ENSPNYG00000014216)	mylpfa (ENSPNYG00000014202)	tbc1d10b (ENSPNYG00000014180)	hsd3b7 (ENSPNYG00000014165)	ENSPNYG00000014139
Percomorphaceae_C	ANCESTRAL SPECIES		ENSGT00940000158989	ENSGT00390000017397	ENSGT00930000151196.b	ENSGT00390000004520	ENSGT00940000160092.B	ENSGT00940000160261.g	ENSGT00940000160439	ENSGT00940000161770	ENSGT00950000182973.b.b.c	ENSGT00940000153561.b.a.b.a.a	ENSGT00940000161700	ENSGT00940000164151.a.b	ENSGT00920000149270	ENSGT00940000160628	ENSGT00940000157978.a	ENSGT00530000063725.o #22	ENSGT00940000164067.B	ENSGT00940000165280.a.b	ENSGT00390000009109	ENSGT00730000114636	ENSGT00940000154348.c.a.a.p	ENSGT00390000018316.a.f	ENSGT00940000166194	ENSGT00390000000050	ENSGT00630000091000	ENSGT00520000055626.b	ENSGT00390000012483	ENSGT00940000164923.a.b	ENSGT00940000159038.a.b	ENSGT00940000159805	ENSGT00940000160236
Percomorphaceae_D	ANCESTRAL SPECIES		ENSGT00640000091541	ENSGT01060000248591.a.a.b.a.b	ENSGT00390000011880.b	ENSGT00940000155386.a	ENSGT00940000165433	ENSGT00940000164979.f.a	ENSGT00940000164979.f.b	ENSGT00940000158604	ENSGT00390000006555	ENSGT00940000158476.a	ENSGT00940000160081.c.a	ENSGT00940000160777	ENSGT00440000035688	ENSGT00390000000463.a	ENSGT00950000182933.B.b	ENSGT00530000063725.o #22	ENSGT00940000157338.a	ENSGT00950000183035.b.f	ENSGT00940000163234.a.b.h.a.a.b	ENSGT00940000163454.a.a.a.a	ENSGT00940000163454.a.a.b	ENSGT00950000183130.A	ENSGT00950000182915.a.a.b	ENSGT00390000008828.fb.b	ENSGT00950000183201.b.a.b	ENSGT00950000183174.B.a.e	ENSGT00940000157090.h	ENSGT00940000154953.b	ENSGT00940000155249.g	ENSGT00940000167646	ENSGT00940000158431.a.a.a.a.a.a.d.b.a.b
Carangaria	ANCESTRAL SPECIES		ENSGT00640000091541	ENSGT01060000248591.a.a.b.a.b	ENSGT00390000011880.b	ENSGT00940000155386.a	ENSGT00940000165433	ENSGT00940000164979.f.a	ENSGT00940000164979.f.b	ENSGT00940000158604	ENSGT00390000006555	ENSGT00940000158476.a	ENSGT00940000160081.c.a	ENSGT00940000160777	ENSGT00440000035688	ENSGT00390000000463.a	ENSGT00950000182933.B.b	ENSGT00530000063725.o #22	ENSGT00940000157338.a	ENSGT00950000183035.b.f	ENSGT00940000163234.a.b.h.a.a.b	ENSGT00940000163454.a.a.a.a	ENSGT00940000163454.a.a.b	ENSGT00950000183130.A	ENSGT00950000182915.a.a.b	ENSGT00390000008828.fb.b	ENSGT00950000183201.b.a.b	ENSGT00950000183174.B.a.e	ENSGT00940000157090.h	ENSGT00940000154953.b	ENSGT00940000155249.g	ENSGT00940000167646	ENSGT00940000157622.a.a
Carangaria_A	ANCESTRAL SPECIES	53	ENSGT00640000091541	ENSGT01060000248591.a.a.b.a.b	ENSGT00390000011880.b	ENSGT00940000155386.a	ENSGT00940000165433	ENSGT00940000164979.f.a	ENSGT00940000164979.f.b	ENSGT00940000158604	ENSGT00390000006555	ENSGT00940000158476.a	ENSGT00940000160081.c.a	ENSGT00940000160777	ENSGT00440000035688	ENSGT00390000000463.a	ENSGT00950000182933.B.b	ENSGT00530000063725.o #22	ENSGT00940000157338.a	ENSGT00950000183035.b.f	ENSGT00940000163234.a.b.h.a.a.b
Barramundi perch	DUPLICATION
Barramundi perch	MODERN SPECIES	78	ENDOV (ENSLCAG00010010612)	ENSLCAG00010010617	SEC14L1 (ENSLCAG00010010682)	ENSLCAG00010010936	trim25 (ENSLCAG00010010945)	trim25 (ENSLCAG00010010952)	dgke (ENSLCAG00010010965)	si:dkey-31g6.6 (ENSLCAG00010010983)	cbx8b (ENSLCAG00010010988)	ENSLCAG00010010990	ENSLCAG00010010993	ENSLCAG00010010996	ccdc40 (ENSLCAG00010011003)	TEX2 (ENSLCAG00010011019)	ENSLCAG00010011027	ENSLCAG00010011032 #22	ENSLCAG00010011039 #22	AXIN2 (ENSLCAG00010011042)	ENSLCAG00010011045	ENSLCAG00010011063
Barramundi perch	MODERN SPECIES	78	ENSLCAG00010010617	SEC14L1 (ENSLCAG00010010682)	ENSLCAG00010010936	trim25 (ENSLCAG00010010945)	trim25 (ENSLCAG00010010952)	dgke (ENSLCAG00010010965)	si:dkey-31g6.6 (ENSLCAG00010010983)	cbx8b (ENSLCAG00010010988)	ENSLCAG00010010990	ENSLCAG00010010993	ENSLCAG00010010996	ccdc40 (ENSLCAG00010011003)	TEX2 (ENSLCAG00010011019)	ENSLCAG00010011027	ENSLCAG00010011032 #22	ENSLCAG00010011039 #22	AXIN2 (ENSLCAG00010011042)	ENSLCAG00010011045	ENSLCAG00010011063
Seriola	DUPLICATION
Seriola	DUPLICATION
Seriola	DUPLICATION
Seriola	ANCESTRAL SPECIES	11	ENSGT01060000248591.a.a.b.a.b	ENSGT00390000011880.b	ENSGT00940000155386.a	ENSGT00940000165433	ENSGT00940000164979.f.a	ENSGT00940000164979.f.b	ENSGT00940000158604	ENSGT00390000006555	ENSGT00940000158476.a	ENSGT00940000160081.c.a	ENSGT00940000160777	ENSGT00440000035688	ENSGT00390000000463.a	ENSGT00950000182933.B.b	ENSGT00530000063725.o.x.b #22	ENSGT00530000063725.o.x.a.a #22	ENSGT00530000063725.o.x.a.b #22	ENSGT00940000157338.a	ENSGT00950000183035.b.f	ENSGT00950000183174.B.a.e	ENSGT00950000183201.b.a.b	ENSGT00390000008828.fb.b	ENSGT00990000204378	ENSGT00950000183130.A	ENSGT00940000163454.a.a.b	ENSGT00940000163454.a.a.a.a	ENSGT00940000163234.a.b.h.a.a.b	ENSGT00940000154277.b.a	ENSGT00940000161195.a.b	ENSGT00940000161361	ENSGT00390000003817
Greater amberjack	MODERN SPECIES	20	ENDOV (ENSSDUG00000003581)	SEC14L1 (ENSSDUG00000003525)	ENSSDUG00000003490	ENSSDUG00000003462	trim25 (ENSSDUG00000003424)	ENSSDUG00000003413	dgke (ENSSDUG00000003368)	si:dkey-31g6.6 (ENSSDUG00000003351)	cbx8b (ENSSDUG00000003344)	CBX4 (ENSSDUG00000003337)	ENSSDUG00000003172	ccdc40 (ENSSDUG00000003129)	TEX2 (ENSSDUG00000003089)	ENSSDUG00000003077	ENSSDUG00000003053 #22	ENSSDUG00000002802 #22	ENSSDUG00000002640 #22	AXIN2 (ENSSDUG00000002553)	ENSSDUG00000002520	naa15b (ENSSDUG00000002446)	ENSSDUG00000002425	scoca (ENSSDUG00000002404)	ENSSDUG00000002378	exosc9 (ENSSDUG00000002313)	ENSSDUG00000002289	ENSSDUG00000002277	ENSSDUG00000002258	ENSSDUG00000002244	prdx2 (ENSSDUG00000002224)	JUNB (ENSSDUG00000002207)	BEST2 (ENSSDUG00000002175)
Yellowtail amberjack	MODERN SPECIES	2746	NPTX1 (ENSSLDG00000001783)	ENDOV (ENSSLDG00000001821)	SEC14L1 (ENSSLDG00000001836)	ENSSLDG00000001914	trim25 (ENSSLDG00000002055)	ENSSLDG00000002079	dgke (ENSSLDG00000002097)	si:dkey-31g6.6 (ENSSLDG00000002136)	cbx8b (ENSSLDG00000002148)	CBX4 (ENSSLDG00000002156)	ENSSLDG00000002172	ccdc40 (ENSSLDG00000002199)	TEX2 (ENSSLDG00000002225)	ENSSLDG00000002275	PRF1 (ENSSLDG00000002282) #22	ENSSLDG00000002314 #22	ENSSLDG00000002507 #22	AXIN2 (ENSSLDG00000002615)	ENSSLDG00000002679	ENSSLDG00000002711	naa15b (ENSSLDG00000002726)
Seriola	ANCESTRAL SPECIES	11	ENSGT00390000011880.b	ENSGT00940000155386.a	ENSGT00940000165433	ENSGT00940000164979.f.a	ENSGT00940000164979.f.b	ENSGT00940000158604	ENSGT00390000006555	ENSGT00940000158476.a	ENSGT00940000160081.c.a	ENSGT00940000160777	ENSGT00440000035688	ENSGT00390000000463.a	ENSGT00950000182933.B.b	ENSGT00530000063725.o.x.b #22	ENSGT00530000063725.o.x.a.a #22	ENSGT00530000063725.o.x.a.b #22	ENSGT00940000157338.a	ENSGT00950000183035.b.f	ENSGT00950000183174.B.a.e	ENSGT00950000183201.b.a.b	ENSGT00390000008828.fb.b	ENSGT00990000204378	ENSGT00950000183130.A	ENSGT00940000163454.a.a.b	ENSGT00940000163454.a.a.a.a	ENSGT00940000163234.a.b.h.a.a.b	ENSGT00940000154277.b.a	ENSGT00940000161195.a.b	ENSGT00940000161361	ENSGT00390000003817	ENSGT00390000006009.b
Greater amberjack	MODERN SPECIES	20	SEC14L1 (ENSSDUG00000003525)	ENSSDUG00000003490	ENSSDUG00000003462	trim25 (ENSSDUG00000003424)	ENSSDUG00000003413	dgke (ENSSDUG00000003368)	si:dkey-31g6.6 (ENSSDUG00000003351)	cbx8b (ENSSDUG00000003344)	CBX4 (ENSSDUG00000003337)	ENSSDUG00000003172	ccdc40 (ENSSDUG00000003129)	TEX2 (ENSSDUG00000003089)	ENSSDUG00000003077	ENSSDUG00000003053 #22	ENSSDUG00000002802 #22	ENSSDUG00000002640 #22	AXIN2 (ENSSDUG00000002553)	ENSSDUG00000002520	naa15b (ENSSDUG00000002446)	ENSSDUG00000002425	scoca (ENSSDUG00000002404)	ENSSDUG00000002378	exosc9 (ENSSDUG00000002313)	ENSSDUG00000002289	ENSSDUG00000002277	ENSSDUG00000002258	ENSSDUG00000002244	prdx2 (ENSSDUG00000002224)	JUNB (ENSSDUG00000002207)	BEST2 (ENSSDUG00000002175)	get3 (ENSSDUG00000002155)
Yellowtail amberjack	MODERN SPECIES	2746	ENDOV (ENSSLDG00000001821)	SEC14L1 (ENSSLDG00000001836)	ENSSLDG00000001914	trim25 (ENSSLDG00000002055)	ENSSLDG00000002079	dgke (ENSSLDG00000002097)	si:dkey-31g6.6 (ENSSLDG00000002136)	cbx8b (ENSSLDG00000002148)	CBX4 (ENSSLDG00000002156)	ENSSLDG00000002172	ccdc40 (ENSSLDG00000002199)	TEX2 (ENSSLDG00000002225)	ENSSLDG00000002275	PRF1 (ENSSLDG00000002282) #22	ENSSLDG00000002314 #22	ENSSLDG00000002507 #22	AXIN2 (ENSSLDG00000002615)	ENSSLDG00000002679	ENSSLDG00000002711	naa15b (ENSSLDG00000002726)
Seriola	ANCESTRAL SPECIES	11	ENSGT00640000091541	ENSGT01060000248591.a.a.b.a.b	ENSGT00390000011880.b	ENSGT00940000155386.a	ENSGT00940000165433	ENSGT00940000164979.f.a	ENSGT00940000164979.f.b	ENSGT00940000158604	ENSGT00390000006555	ENSGT00940000158476.a	ENSGT00940000160081.c.a	ENSGT00940000160777	ENSGT00440000035688	ENSGT00390000000463.a	ENSGT00950000182933.B.b	ENSGT00530000063725.o.x.b #22	ENSGT00530000063725.o.x.a.a #22	ENSGT00530000063725.o.x.a.b #22	ENSGT00940000157338.a	ENSGT00950000183035.b.f	ENSGT00950000183174.B.a.e	ENSGT00950000183201.b.a.b	ENSGT00390000008828.fb.b	ENSGT00990000204378	ENSGT00950000183130.A	ENSGT00940000163454.a.a.b	ENSGT00940000163454.a.a.a.a	ENSGT00940000163234.a.b.h.a.a.b	ENSGT00940000154277.b.a	ENSGT00940000161195.a.b	ENSGT00940000161361
Greater amberjack	MODERN SPECIES	20	NPTX1 (ENSSDUG00000003594)	ENDOV (ENSSDUG00000003581)	SEC14L1 (ENSSDUG00000003525)	ENSSDUG00000003490	ENSSDUG00000003462	trim25 (ENSSDUG00000003424)	ENSSDUG00000003413	dgke (ENSSDUG00000003368)	si:dkey-31g6.6 (ENSSDUG00000003351)	cbx8b (ENSSDUG00000003344)	CBX4 (ENSSDUG00000003337)	ENSSDUG00000003172	ccdc40 (ENSSDUG00000003129)	TEX2 (ENSSDUG00000003089)	ENSSDUG00000003077	ENSSDUG00000003053 #22	ENSSDUG00000002802 #22	ENSSDUG00000002640 #22	AXIN2 (ENSSDUG00000002553)	ENSSDUG00000002520	naa15b (ENSSDUG00000002446)	ENSSDUG00000002425	scoca (ENSSDUG00000002404)	ENSSDUG00000002378	exosc9 (ENSSDUG00000002313)	ENSSDUG00000002289	ENSSDUG00000002277	ENSSDUG00000002258	ENSSDUG00000002244	prdx2 (ENSSDUG00000002224)	JUNB (ENSSDUG00000002207)
Yellowtail amberjack	MODERN SPECIES	2746	RPTOR (ENSSLDG00000001630)	NPTX1 (ENSSLDG00000001783)	ENDOV (ENSSLDG00000001821)	SEC14L1 (ENSSLDG00000001836)	ENSSLDG00000001914	trim25 (ENSSLDG00000002055)	ENSSLDG00000002079	dgke (ENSSLDG00000002097)	si:dkey-31g6.6 (ENSSLDG00000002136)	cbx8b (ENSSLDG00000002148)	CBX4 (ENSSLDG00000002156)	ENSSLDG00000002172	ccdc40 (ENSSLDG00000002199)	TEX2 (ENSSLDG00000002225)	ENSSLDG00000002275	PRF1 (ENSSLDG00000002282) #22	ENSSLDG00000002314 #22	ENSSLDG00000002507 #22	AXIN2 (ENSSLDG00000002615)	ENSSLDG00000002679	ENSSLDG00000002711	naa15b (ENSSLDG00000002726)
Seriola	ANCESTRAL SPECIES	15	ENSGT00940000158989	ENSGT00390000017397	ENSGT00930000151196.b	ENSGT00390000004520	ENSGT00940000160092.B	ENSGT00940000160261.g	ENSGT00940000160439	ENSGT00940000161770	ENSGT00950000182973.b.b.c	ENSGT00940000153561.b.a.b.a.a	ENSGT00940000161700	ENSGT00940000164151.a.b	ENSGT00920000149270	ENSGT00940000160628	ENSGT00940000157978.a	ENSGT00530000063725.o.y #22	ENSGT00940000164067.B	ENSGT00940000165280.a.b	ENSGT00390000009109	ENSGT00730000114636	ENSGT00940000154348.c.a.a.p	ENSGT00390000018316.a.f	ENSGT00940000166194	ENSGT00390000000050	ENSGT01010000226980	ENSGT00520000055626.b	ENSGT00390000012483	ENSGT00940000164923.a.b	ENSGT00940000159038.a.b	ENSGT00940000159805	ENSGT00940000160236
Greater amberjack	MODERN SPECIES	17	tbc1d17 (ENSSDUG00000021839)	ENSSDUG00000021848	zgc:195001 (ENSSDUG00000021852)	emc10 (ENSSDUG00000021857)	mybpc2a (ENSSDUG00000021876)	LRRC4B (ENSSDUG00000021904)	med25 (ENSSDUG00000021908)	SYT3 (ENSSDUG00000021918)	ENSSDUG00000021940	ENSSDUG00000021963	ENSSDUG00000021978	ppp1caa (ENSSDUG00000021983)	cldni (ENSSDUG00000021999)	coro1a (ENSSDUG00000022002)	paqr4a (ENSSDUG00000022020)	ENSSDUG00000022022 #22	prf1.9 (ENSSDUG00000022028)	ENSSDUG00000022065	ENSSDUG00000022042	ENSSDUG00000022068	ENSSDUG00000022069	elob (ENSSDUG00000022076)	ENSSDUG00000022088	rusf1 (ENSSDUG00000022094)	ENSSDUG00000022103	ENSSDUG00000022107	cd2bp2 (ENSSDUG00000022114)	pheta2 (ENSSDUG00000022119)	mylpfa (ENSSDUG00000022124)	tbc1d10b (ENSSDUG00000022131)	hsd3b7 (ENSSDUG00000022138)
Anabantaria	ANCESTRAL SPECIES	1	ENSGT00640000091541	ENSGT01060000248591.a.a.b.a.b	ENSGT00390000011880.b	ENSGT00940000155386.a	ENSGT00940000165433	ENSGT00940000164979.f.a	ENSGT00940000164979.f.b	ENSGT00940000158604	ENSGT00390000006555	ENSGT00940000158476.a	ENSGT00940000160081.c.a	ENSGT00940000160777	ENSGT00440000035688	ENSGT00390000000463.a	ENSGT00950000182933.B.b	ENSGT00530000063725.o #22	ENSGT00940000157338.a	ENSGT00950000183035.b.f	ENSGT00940000163234.a.b.h.a.a.b	ENSGT00940000163454.a.a.b	ENSGT00950000183130.A	ENSGT00950000182915.a.a.b	ENSGT00390000008828.fb.b	ENSGT00950000183201.b.a.b	ENSGT00950000183174.B.a.e	ENSGT00940000157090.h	ENSGT00940000154953.b	ENSGT00940000155249.g	ENSGT00940000167646	ENSGT00940000158431.a.a.a.a.a.a.d.b.a.b	ENSGT00940000177894
Zig-zag eel	DUPLICATION
Zig-zag eel	MODERN SPECIES		RPTOR (ENSMAMG00000005603)	ENSMAMG00000005769	ENDOV (ENSMAMG00000005788)	ENSMAMG00000005815	ENSMAMG00000005872	trim25 (ENSMAMG00000005948)	trim25 (ENSMAMG00000026380)	dgke (ENSMAMG00000006010)	si:dkey-31g6.6 (ENSMAMG00000006047)	cbx8b (ENSMAMG00000024709)	ENSMAMG00000006067	ENSMAMG00000006075	ccdc40 (ENSMAMG00000006097)	ENSMAMG00000006113	ENSMAMG00000006162	ENSMAMG00000026407 #22	ENSMAMG00000006170 #22	ENSMAMG00000006234	ENSMAMG00000006274	ENSMAMG00000006369	ENSMAMG00000006444	ENSMAMG00000006465	clgn (ENSMAMG00000006473)	ENSMAMG00000026130	ENSMAMG00000006510	ENSMAMG00000006525	ENSMAMG00000027120	ENSMAMG00000006660	ENSMAMG00000006732	ENSMAMG00000006755	ENSMAMG00000006770
Zig-zag eel	MODERN SPECIES		ENSMAMG00000005769	ENDOV (ENSMAMG00000005788)	ENSMAMG00000005815	ENSMAMG00000005872	trim25 (ENSMAMG00000005948)	trim25 (ENSMAMG00000026380)	dgke (ENSMAMG00000006010)	si:dkey-31g6.6 (ENSMAMG00000006047)	cbx8b (ENSMAMG00000024709)	ENSMAMG00000006067	ENSMAMG00000006075	ccdc40 (ENSMAMG00000006097)	ENSMAMG00000006113	ENSMAMG00000006162	ENSMAMG00000026407 #22	ENSMAMG00000006170 #22	ENSMAMG00000006234	ENSMAMG00000006274	ENSMAMG00000006369	ENSMAMG00000006444	ENSMAMG00000006465	clgn (ENSMAMG00000006473)	ENSMAMG00000026130	ENSMAMG00000006510	ENSMAMG00000006525	ENSMAMG00000027120	ENSMAMG00000006660	ENSMAMG00000006732	ENSMAMG00000006755	ENSMAMG00000006770	slc43a3a (ENSMAMG00000006783)
Anabantoidei	ANCESTRAL SPECIES		ENSGT00640000091541	ENSGT01060000248591.a.a.b.a.b	ENSGT00390000011880.b	ENSGT00940000155386.a	ENSGT00940000165433	ENSGT00940000164979.f.a	ENSGT00940000164979.f.b	ENSGT00940000158604	ENSGT00390000006555	ENSGT00940000158476.a	ENSGT00940000160081.c.a	ENSGT00940000160777	ENSGT00440000035688	ENSGT00390000000463.a	ENSGT00950000182933.B.b	ENSGT00530000063725.o #22	ENSGT00940000157338.a	ENSGT00950000183035.b.f	ENSGT00940000163234.a.b.h.a.a.b	ENSGT00940000163454.a.a.b	ENSGT00950000183130.A	ENSGT00950000182915.a.a.b	ENSGT00390000008828.fb.b	ENSGT00950000183201.b.a.b	ENSGT00950000183174.B.a.e	ENSGT00940000157090.h	ENSGT00940000154953.b	ENSGT00940000155249.g	ENSGT00940000167646	ENSGT00940000158431.a.a.a.a.a.a.d.b.a.b	ENSGT00940000157622.a.a
Siamese fighting fish	MODERN SPECIES		ENSBSLG00000016168	ENSBSLG00000016174	NPTX1 (ENSBSLG00000016177)	ENDOV (ENSBSLG00000016186)	SEC14L1 (ENSBSLG00000016215)	ENSBSLG00000016610	trim25 (ENSBSLG00000016658)	ENSBSLG00000016713	dgke (ENSBSLG00000016750)	si:dkey-31g6.6 (ENSBSLG00000016935)	cbx8b (ENSBSLG00000017001)	CBX4 (ENSBSLG00000017018)	ENSBSLG00000017037	TEX2 (ENSBSLG00000017156)	ENSBSLG00000017195	prf1.2 (ENSBSLG00000017225) #22	AXIN2 (ENSBSLG00000017284)	ENSBSLG00000017312	dctd (ENSBSLG00000017363)	TENM3 (ENSBSLG00000018093)	ENSBSLG00000023318	ENSBSLG00000023348	ENSBSLG00000023472	ENSBSLG00000023480	ENSBSLG00000023488	ENSBSLG00000023530	ENSBSLG00000023543	vegfc (ENSBSLG00000023549)	ENSBSLG00000023584	vegfc (ENSBSLG00000023591)	ENSBSLG00000000125
Climbing perch	DUPLICATION
Climbing perch	DUPLICATION
Climbing perch	MODERN SPECIES		ENSATEG00000023487	ENSATEG00000023475	trim25 (ENSATEG00000023470)	trim25 (ENSATEG00000023468)	dgke (ENSATEG00000023459)	si:dkey-31g6.6 (ENSATEG00000023451)	cbx8b (ENSATEG00000023446)	ENSATEG00000023442	ENSATEG00000023414	ccdc40 (ENSATEG00000023409)	ENSATEG00000023394	ENSATEG00000023385	ENSATEG00000025779 #22	ENSATEG00000029006 #22	ENSATEG00000023259 #22	ENSATEG00000023341 #22	ENSATEG00000023147	ENSATEG00000028282	ENSATEG00000023123	ENSATEG00000023081	ENSATEG00000023052	ENSATEG00000023032	clgn (ENSATEG00000023020)	ENSATEG00000023017	ENSATEG00000023015	ENSATEG00000023002	ENSATEG00000022993	ENSATEG00000022983	ENSATEG00000022975	ENSATEG00000022977	ENSATEG00000022972
Climbing perch	MODERN SPECIES		ENDOV (ENSATEG00000023498)	ENSATEG00000023487	ENSATEG00000023475	trim25 (ENSATEG00000023470)	trim25 (ENSATEG00000023468)	dgke (ENSATEG00000023459)	si:dkey-31g6.6 (ENSATEG00000023451)	cbx8b (ENSATEG00000023446)	ENSATEG00000023442	ENSATEG00000023414	ccdc40 (ENSATEG00000023409)	ENSATEG00000023394	ENSATEG00000023385	ENSATEG00000025779 #22	ENSATEG00000029006 #22	ENSATEG00000023259 #22	ENSATEG00000023341 #22	ENSATEG00000023147	ENSATEG00000028282	ENSATEG00000023123	ENSATEG00000023081	ENSATEG00000023052	ENSATEG00000023032	clgn (ENSATEG00000023020)	ENSATEG00000023017	ENSATEG00000023015	ENSATEG00000023002	ENSATEG00000022993	ENSATEG00000022983	ENSATEG00000022975	ENSATEG00000022977
Climbing perch	DUPLICATION
Climbing perch	MODERN SPECIES		RPTOR (ENSATEG00000000099)	ENSATEG00000000028	ENDOV (ENSATEG00000023498)	ENSATEG00000023487	ENSATEG00000023475	trim25 (ENSATEG00000023470)	trim25 (ENSATEG00000023468)	dgke (ENSATEG00000023459)	si:dkey-31g6.6 (ENSATEG00000023451)	cbx8b (ENSATEG00000023446)	ENSATEG00000023442	ENSATEG00000023414	ccdc40 (ENSATEG00000023409)	ENSATEG00000023394	ENSATEG00000023385	ENSATEG00000025779 #22	ENSATEG00000029006 #22	ENSATEG00000023259 #22	ENSATEG00000023341 #22	ENSATEG00000023147	ENSATEG00000028282	ENSATEG00000023123	ENSATEG00000023081	ENSATEG00000023052	ENSATEG00000023032	clgn (ENSATEG00000023020)	ENSATEG00000023017	ENSATEG00000023015	ENSATEG00000023002	ENSATEG00000022993	ENSATEG00000022983
Climbing perch	MODERN SPECIES		ENSATEG00000000028	ENDOV (ENSATEG00000023498)	ENSATEG00000023487	ENSATEG00000023475	trim25 (ENSATEG00000023470)	trim25 (ENSATEG00000023468)	dgke (ENSATEG00000023459)	si:dkey-31g6.6 (ENSATEG00000023451)	cbx8b (ENSATEG00000023446)	ENSATEG00000023442	ENSATEG00000023414	ccdc40 (ENSATEG00000023409)	ENSATEG00000023394	ENSATEG00000023385	ENSATEG00000025779 #22	ENSATEG00000029006 #22	ENSATEG00000023259 #22	ENSATEG00000023341 #22	ENSATEG00000023147	ENSATEG00000028282	ENSATEG00000023123	ENSATEG00000023081	ENSATEG00000023052	ENSATEG00000023032	clgn (ENSATEG00000023020)	ENSATEG00000023017	ENSATEG00000023015	ENSATEG00000023002	ENSATEG00000022993	ENSATEG00000022983	ENSATEG00000022975
Eupercaria	ANCESTRAL SPECIES	3	ENSGT00390000017397	ENSGT00930000151196.b	ENSGT00390000004520	ENSGT00940000160092.B	ENSGT00940000160261.g	ENSGT00940000160439	ENSGT00940000161770	ENSGT00950000182973.b.b.c	ENSGT00940000153561.b.a.b.a.a	ENSGT00940000161700	ENSGT00940000164151.a.b	ENSGT00920000149270	ENSGT00940000160628	ENSGT00940000157978.a	ENSGT00950000182933.B.b	ENSGT00530000063725.o #22	ENSGT00940000164067.B	ENSGT00940000165280.a.b	ENSGT00390000009109	ENSGT00730000114636	ENSGT00940000154348.c.a.a.p	ENSGT00390000018316.a.f	ENSGT00940000166194	ENSGT00390000000050	ENSGT00630000091000	ENSGT00520000055626.b	ENSGT00390000012483	ENSGT00940000164923.a.b	ENSGT00940000159038.a.b	ENSGT00940000159805	ENSGT00940000160236
Tetraodontidae	ANCESTRAL SPECIES	54			ENSGT00940000154838.A.f.b.a	ENSGT00390000002761	ENSGT00940000161425	ENSGT01070000253837.c	ENSGT01060000248591.a.a.b.a.b	ENSGT00390000011880.b	ENSGT00940000155386.a	ENSGT00940000165433	ENSGT00940000164979.e	ENSGT00940000158604	ENSGT00940000160081.c.a	ENSGT00940000160777	ENSGT00390000000463.a	ENSGT00530000063725.o #22	ENSGT00940000157338.a	ENSGT00950000183035.b.f	ENSGT00940000163234.a.b.h.a.b	ENSGT00950000183130.A	ENSGT00990000204378	ENSGT00390000008828.fb.b	ENSGT00950000183201.b.a.b	ENSGT00950000183174.B.a.e	ENSGT00940000157090.h	ENSGT00940000154953.b	ENSGT00940000155249.g	ENSGT00940000156045.b	ENSGT00390000003068	ENSGT00530000063359.B	ENSGT00940000164963.c.b
Fugu	DUPLICATION
Fugu	DUPLICATION
Fugu	MODERN SPECIES	8	QPRT (ENSTRUG00000001650)	ppp1r12c (ENSTRUG00000001629)	ENSTRUG00000032868	ENSTRUG00000027739	NPTX1 (ENSTRUG00000004582)	ENDOV (ENSTRUG00000004474)	SEC14L1 (ENSTRUG00000003962)	ENSTRUG00000003563	trim25 (ENSTRUG00000002882)	dgke (ENSTRUG00000002270)	ENSTRUG00000032147	CBX4 (ENSTRUG00000001874)	CARD14 (ENSTRUG00000003023)	TEX2 (ENSTRUG00000032313)	ENSTRUG00000004126 #22	ENSTRUG00000031733 #22	ENSTRUG00000028364 #22	AXIN2 (ENSTRUG00000005813)	ENSTRUG00000032628	ENSTRUG00000004721	exosc9 (ENSTRUG00000004119)	ENSTRUG00000003449	scoca (ENSTRUG00000029569)	ENSTRUG00000003286	ENSTRUG00000021971	naa15b (ENSTRUG00000015036)	ENSTRUG00000027001	ENSTRUG00000032488	elf2b (ENSTRUG00000014983)	NOCT (ENSTRUG00000014977)	ENSTRUG00000014916
Fugu	MODERN SPECIES	8	ENSTRUG00000028957	QPRT (ENSTRUG00000001650)	ppp1r12c (ENSTRUG00000001629)	ENSTRUG00000032868	ENSTRUG00000027739	NPTX1 (ENSTRUG00000004582)	ENDOV (ENSTRUG00000004474)	SEC14L1 (ENSTRUG00000003962)	ENSTRUG00000003563	trim25 (ENSTRUG00000002882)	dgke (ENSTRUG00000002270)	ENSTRUG00000032147	CBX4 (ENSTRUG00000001874)	CARD14 (ENSTRUG00000003023)	TEX2 (ENSTRUG00000032313)	ENSTRUG00000004126 #22	ENSTRUG00000031733 #22	ENSTRUG00000028364 #22	AXIN2 (ENSTRUG00000005813)	ENSTRUG00000032628	ENSTRUG00000004721	exosc9 (ENSTRUG00000004119)	ENSTRUG00000003449	scoca (ENSTRUG00000029569)	ENSTRUG00000003286	ENSTRUG00000021971	naa15b (ENSTRUG00000015036)	ENSTRUG00000027001	ENSTRUG00000032488	elf2b (ENSTRUG00000014983)	NOCT (ENSTRUG00000014977)
Fugu	MODERN SPECIES	8	ppp1r12c (ENSTRUG00000001629)	ENSTRUG00000032868	ENSTRUG00000027739	NPTX1 (ENSTRUG00000004582)	ENDOV (ENSTRUG00000004474)	SEC14L1 (ENSTRUG00000003962)	ENSTRUG00000003563	trim25 (ENSTRUG00000002882)	dgke (ENSTRUG00000002270)	ENSTRUG00000032147	CBX4 (ENSTRUG00000001874)	CARD14 (ENSTRUG00000003023)	TEX2 (ENSTRUG00000032313)	ENSTRUG00000004126 #22	ENSTRUG00000031733 #22	ENSTRUG00000028364 #22	AXIN2 (ENSTRUG00000005813)	ENSTRUG00000032628	ENSTRUG00000004721	exosc9 (ENSTRUG00000004119)	ENSTRUG00000003449	scoca (ENSTRUG00000029569)	ENSTRUG00000003286	ENSTRUG00000021971	naa15b (ENSTRUG00000015036)	ENSTRUG00000027001	ENSTRUG00000032488	elf2b (ENSTRUG00000014983)	NOCT (ENSTRUG00000014977)	ENSTRUG00000014916	CTNND1 (ENSTRUG00000014794)
Eupecaria_A	ANCESTRAL SPECIES	5	ENSGT00390000017397	ENSGT00930000151196.b	ENSGT00390000004520	ENSGT00940000160092.B	ENSGT00940000160261.g	ENSGT00940000160439	ENSGT00940000161770	ENSGT00950000182973.b.b.c	ENSGT00940000153561.b.a.b.a.a	ENSGT00940000161700	ENSGT00940000164151.a.b	ENSGT00920000149270	ENSGT00940000160628	ENSGT00940000157978.a	ENSGT00950000182933.B.b	ENSGT00530000063725.o #22	ENSGT00940000164067.B	ENSGT00940000165280.a.b	ENSGT00390000009109	ENSGT00730000114636	ENSGT00940000154348.c.a.a.p	ENSGT00390000018316.a.f	ENSGT00940000166194	ENSGT00390000000050	ENSGT00630000091000	ENSGT00520000055626.b	ENSGT00390000012483	ENSGT00940000164923.a.b	ENSGT00940000159038.a.b	ENSGT00940000159805	ENSGT00940000160236
Eupecaria_B	ANCESTRAL SPECIES	1	ENSGT00640000091541	ENSGT01060000248591.a.a.b.a.b	ENSGT00390000011880.b	ENSGT00940000155386.a	ENSGT00940000165433	ENSGT00940000164979.f.a	ENSGT00940000164979.f.b	ENSGT00940000158604	ENSGT00390000006555	ENSGT00940000158476.a	ENSGT00940000160081.c.a	ENSGT00940000160777	ENSGT00440000035688	ENSGT00390000000463.a	ENSGT00950000182933.B.b	ENSGT00530000063725.o #22	ENSGT00940000157338.a	ENSGT00950000183035.b.f	ENSGT00940000163234.a.b.h.a.a.b	ENSGT00940000163454.a.a.a.a	ENSGT00940000163454.a.a.b	ENSGT00950000183130.A	ENSGT00950000182915.a.a.b	ENSGT00390000008828.fb.b	ENSGT00950000183201.b.a.b	ENSGT00950000183174.B.a.e	ENSGT00940000157090.h	ENSGT00940000154953.b	ENSGT00940000155249.g	ENSGT00940000167646	ENSGT00940000158431.a.a.a.a.a.a.d.b.a.b
Eupecaria_C	ANCESTRAL SPECIES	22	ENSGT00640000091541	ENSGT01060000248591.a.a.b.a.b	ENSGT00390000011880.b	ENSGT00940000155386.a	ENSGT00940000165433	ENSGT00940000164979.f.a	ENSGT00940000164979.f.b	ENSGT00940000158604	ENSGT00390000006555	ENSGT00940000158476.a	ENSGT00940000160081.c.a	ENSGT00940000160777	ENSGT00440000035688	ENSGT00390000000463.a	ENSGT00950000182933.B.b	ENSGT00530000063725.o #22	ENSGT00940000157338.a	ENSGT00950000183035.b.f	ENSGT00940000163234.a.b.h.a.a.b	ENSGT00940000163454.a.a.a.a	ENSGT00940000163454.a.a.b	ENSGT00950000183130.A	ENSGT00950000182915.a.a.b	ENSGT00390000008828.fb.b	ENSGT00950000183201.b.a.b	ENSGT00950000183174.B.a.e	ENSGT00940000157090.h	ENSGT00940000154953.b	ENSGT00940000155249.g	ENSGT00940000167646	ENSGT00940000158431.a.a.a.a.a.a.d.b.a.b
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	21	ENSGT01070000253837.c	ENSGT00640000091541	ENSGT01060000248591.a.a.b.a.b	ENSGT00390000011880.b	ENSGT00940000155386.a	ENSGT00940000165433	ENSGT00940000164979.f.a	ENSGT00940000164979.f.b	ENSGT00940000158604	ENSGT00390000006555	ENSGT00940000158476.a	ENSGT00940000160081.c.a	ENSGT00940000160777	ENSGT00440000035688	ENSGT00390000000463.a	ENSGT00530000063725.o #22	ENSGT00940000157338.a	ENSGT00950000183035.b.f	ENSGT00940000163234.a.b.h.a.a.b	ENSGT00940000163454.a.a.a.a	ENSGT00940000163454.a.a.b	ENSGT00950000183130.A	ENSGT00950000182915.a.a.b	ENSGT00390000008828.fb.b	ENSGT00950000183201.b.a.b	ENSGT00950000183174.B.a.e	ENSGT00940000157090.h	ENSGT00940000154953.b	ENSGT00940000155249.g	ENSGT00940000167646	ENSGT00940000158431.a.a.a.a.a.a.d.b.a.b
European seabass	DUPLICATION
European seabass	DUPLICATION
European seabass	MODERN SPECIES	20	ENSDLAG00005012070	ENSDLAG00005012106	ENSDLAG00005012655	NPTX1 (ENSDLAG00005032897)	ENSDLAG00005012701	ENSDLAG00005012860	trim25 (ENSDLAG00005012893)	trim25 (ENSDLAG00005012906)	dgke (ENSDLAG00005012945)	si:dkey-31g6.6 (ENSDLAG00005013316)	cbx8b (ENSDLAG00005013326)	ENSDLAG00005033704	ENSDLAG00005027725	ENSDLAG00005027931 #22	ENSDLAG00005013486	ENSDLAG00005013479 #22	ENSDLAG00005013503 #22	ENSDLAG00005032789	ENSDLAG00005013522	ENSDLAG00005013535	ENSDLAG00005013772	ENSDLAG00005031205	ENSDLAG00005013822	clgn (ENSDLAG00005013929)	ENSDLAG00005033773	ENSDLAG00005014938	ENSDLAG00005014969	ENSDLAG00005034523	ENSDLAG00005015909	ENSDLAG00005015912	ENSDLAG00005015919
European seabass	MODERN SPECIES	20	ENSDLAG00005012106	ENSDLAG00005012655	NPTX1 (ENSDLAG00005032897)	ENSDLAG00005012701	ENSDLAG00005012860	trim25 (ENSDLAG00005012893)	trim25 (ENSDLAG00005012906)	dgke (ENSDLAG00005012945)	si:dkey-31g6.6 (ENSDLAG00005013316)	cbx8b (ENSDLAG00005013326)	ENSDLAG00005033704	ENSDLAG00005027725	ENSDLAG00005027931 #22	ENSDLAG00005013486	ENSDLAG00005013479 #22	ENSDLAG00005013503 #22	ENSDLAG00005032789	ENSDLAG00005013522	ENSDLAG00005013535	ENSDLAG00005013772	ENSDLAG00005031205	ENSDLAG00005013822	clgn (ENSDLAG00005013929)	ENSDLAG00005033773	ENSDLAG00005014938	ENSDLAG00005014969	ENSDLAG00005034523	ENSDLAG00005015909	ENSDLAG00005015912	ENSDLAG00005015919	ENSDLAG00005029906
European seabass	MODERN SPECIES	20	ENSDLAG00005033647	ENSDLAG00005012002	ENSDLAG00005012070	ENSDLAG00005012106	ENSDLAG00005012655	NPTX1 (ENSDLAG00005032897)	ENSDLAG00005012701	ENSDLAG00005012860	trim25 (ENSDLAG00005012893)	trim25 (ENSDLAG00005012906)	dgke (ENSDLAG00005012945)	si:dkey-31g6.6 (ENSDLAG00005013316)	cbx8b (ENSDLAG00005013326)	ENSDLAG00005033704	ENSDLAG00005027725	ENSDLAG00005027931 #22	ENSDLAG00005013486	ENSDLAG00005013479 #22	ENSDLAG00005013503 #22	ENSDLAG00005032789	ENSDLAG00005013522	ENSDLAG00005013535	ENSDLAG00005013772	ENSDLAG00005031205	ENSDLAG00005013822	clgn (ENSDLAG00005013929)	ENSDLAG00005033773	ENSDLAG00005014938	ENSDLAG00005014969	ENSDLAG00005034523	ENSDLAG00005015909
Large yellow croaker	MODERN SPECIES	481	RPTOR (ENSLCRG00005021963)	ENDOV (ENSLCRG00005021959)	ENSLCRG00005021958	SEC14L1 (ENSLCRG00005021952)	ENSLCRG00005021944	trim25 (ENSLCRG00005021940)	trim25 (ENSLCRG00005021938)	dgke (ENSLCRG00005021876)	si:dkey-31g6.6 (ENSLCRG00005021874)	cbx8b (ENSLCRG00005021873)	CBX4 (ENSLCRG00005021871)	ENSLCRG00005021868	ccdc40 (ENSLCRG00005021856)	TEX2 (ENSLCRG00005021847)	anapc11 (ENSLCRG00005021844)	prf1.2 (ENSLCRG00005021843) #22	AXIN2 (ENSLCRG00005021842)	ENSLCRG00005021841	ENSLCRG00005021838	gria2a (ENSLCRG00005021303)	TMEM187 (ENSLCRG00005021296)	saraf (ENSLCRG00005021294)	gstt1b (ENSLCRG00005021293)	ENSLCRG00005021292	TAAR5 (ENSLCRG00005021289)	ENSLCRG00005021285	ENSLCRG00005021283	DNAH2 (ENSLCRG00005021278)	ENSLCRG00005021276	ENSLCRG00005021275	p2rx3b (ENSLCRG00005021270)
Gilthead seabream	DUPLICATION
Gilthead seabream	MODERN SPECIES		RPTOR (ENSSAUG00010000603)	NPTX1 (ENSSAUG00010000538)	ENDOV (ENSSAUG00010000523)	SEC14L1 (ENSSAUG00010000487)	ENSSAUG00010000462	trim25 (ENSSAUG00010000437)	trim25 (ENSSAUG00010000413)	dgke (ENSSAUG00010000370)	si:dkey-31g6.6 (ENSSAUG00010000350)	cbx8b (ENSSAUG00010000342)	CBX4 (ENSSAUG00010000337)	CARD14 (ENSSAUG00010000319)	ccdc40 (ENSSAUG00010000297)	TEX2 (ENSSAUG00010000271)	ENSSAUG00010000260	ENSSAUG00010000252 #22	ENSSAUG00010000241	ENSSAUG00010000234 #22	AXIN2 (ENSSAUG00010000226)	ENSSAUG00010000216	ENSSAUG00010000159	ENSSAUG00010000124	ENSSAUG00010026560	exosc9 (ENSSAUG00010026553)	clgn (ENSSAUG00010026519)	scoca (ENSSAUG00010026513)	ENSSAUG00010026512	naa15b (ENSSAUG00010026407)	elf2b (ENSSAUG00010026384)	NOCT (ENSSAUG00010026383)	ENSSAUG00010026381
Gilthead seabream	MODERN SPECIES		ENDOV (ENSSAUG00010000523)	SEC14L1 (ENSSAUG00010000487)	ENSSAUG00010000462	trim25 (ENSSAUG00010000437)	trim25 (ENSSAUG00010000413)	dgke (ENSSAUG00010000370)	si:dkey-31g6.6 (ENSSAUG00010000350)	cbx8b (ENSSAUG00010000342)	CBX4 (ENSSAUG00010000337)	CARD14 (ENSSAUG00010000319)	ccdc40 (ENSSAUG00010000297)	TEX2 (ENSSAUG00010000271)	ENSSAUG00010000260	ENSSAUG00010000252 #22	ENSSAUG00010000241	ENSSAUG00010000234 #22	AXIN2 (ENSSAUG00010000226)	ENSSAUG00010000216	ENSSAUG00010000159	ENSSAUG00010000124	ENSSAUG00010026560	exosc9 (ENSSAUG00010026553)	clgn (ENSSAUG00010026519)	scoca (ENSSAUG00010026513)	ENSSAUG00010026512	naa15b (ENSSAUG00010026407)	elf2b (ENSSAUG00010026384)	NOCT (ENSSAUG00010026383)	ENSSAUG00010026381	ENSSAUG00010026380	slc43a3a (ENSSAUG00010026376)
Perciformes	ANCESTRAL SPECIES	2	ENSGT00640000091541	ENSGT01060000248591.a.a.b.a.b	ENSGT00390000011880.b	ENSGT00940000155386.a	ENSGT00940000165433	ENSGT00940000164979.f.a	ENSGT00940000164979.f.b	ENSGT00940000158604	ENSGT00390000006555	ENSGT00940000158476.a	ENSGT00940000160081.c.a	ENSGT00940000160777	ENSGT00440000035688	ENSGT00390000000463.a	ENSGT00950000182933.B.b	ENSGT00530000063725.o #22	ENSGT00940000157338.a	ENSGT00950000183035.b.f	ENSGT00940000163234.a.b.h.a.a.b	ENSGT00940000163454.a.a.a.a	ENSGT00940000163454.a.a.b	ENSGT00950000183130.A	ENSGT00950000182915.a.a.b	ENSGT00390000008828.fb.b	ENSGT00950000183201.b.a.b	ENSGT00950000183174.B.a.e	ENSGT00940000157090.h	ENSGT00940000154953.b	ENSGT00940000155249.g	ENSGT00940000163186	ENSGT00940000157622.a.a
Cottioidei	ANCESTRAL SPECIES	3	ENSGT00640000091541	ENSGT01060000248591.a.a.b.a.b	ENSGT00390000011880.b	ENSGT00940000155386.a	ENSGT00940000165433	ENSGT00940000164979.f.a	ENSGT00940000164979.f.b	ENSGT00940000158604	ENSGT00390000006555	ENSGT00940000158476.a	ENSGT00940000160081.c.a	ENSGT00940000160777	ENSGT00440000035688	ENSGT00390000000463.a	ENSGT00950000182933.B.b	ENSGT00530000063725.o #22	ENSGT00940000157338.a	ENSGT00950000183035.b.f	ENSGT00940000163234.a.b.h.a.a.b	ENSGT00940000163454.a.a.a.a	ENSGT00940000163454.a.a.b	ENSGT00950000183130.A	ENSGT00950000182915.a.a.b	ENSGT00390000008828.fb.b	ENSGT00870000137155	ENSGT00950000183174.B.a.e	ENSGT00940000157090.h	ENSGT00940000154953.b	ENSGT00940000155249.g	ENSGT00940000177894	ENSGT00940000157622.a.a
Stickleback	DUPLICATION
Stickleback	DUPLICATION
Stickleback	MODERN SPECIES	4	tppp2 (ENSGACG00000018570)	ENSGACG00000018568	ENSGACG00000018566	ENSGACG00000018563	psmd12 (ENSGACG00000018535)	helz (ENSGACG00000018530)	cacng1a (ENSGACG00000018528)	CACNG4 (ENSGACG00000018524)	cacng5a (ENSGACG00000018521)	prkcaa (ENSGACG00000018519)	APOH (ENSGACG00000018518)	APOH (ENSGACG00000018516)	nol11 (ENSGACG00000018513)	BPTF (ENSGACG00000018507)	ENSGACG00000018506	ENSGACG00000018504 #22	ENSGACG00000018501	ENSGACG00000018500 #22	AXIN2 (ENSGACG00000018497)	ENSGACG00000018494	ENSGACG00000018491	ENSGACG00000018488	exosc9 (ENSGACG00000018481)	clgn (ENSGACG00000018479)	scoca (ENSGACG00000018478)	ENSGACG00000018476	naa15b (ENSGACG00000018473)	ENSGACG00000018472	elf2b (ENSGACG00000018469)	NOCT (ENSGACG00000018465)	ENSGACG00000018463
Stickleback	MODERN SPECIES	4	ENSGACG00000018566	ENSGACG00000018563	psmd12 (ENSGACG00000018535)	helz (ENSGACG00000018530)	cacng1a (ENSGACG00000018528)	CACNG4 (ENSGACG00000018524)	cacng5a (ENSGACG00000018521)	prkcaa (ENSGACG00000018519)	APOH (ENSGACG00000018518)	APOH (ENSGACG00000018516)	nol11 (ENSGACG00000018513)	BPTF (ENSGACG00000018507)	ENSGACG00000018506	ENSGACG00000018504 #22	ENSGACG00000018501	ENSGACG00000018500 #22	AXIN2 (ENSGACG00000018497)	ENSGACG00000018494	ENSGACG00000018491	ENSGACG00000018488	exosc9 (ENSGACG00000018481)	clgn (ENSGACG00000018479)	scoca (ENSGACG00000018478)	ENSGACG00000018476	naa15b (ENSGACG00000018473)	ENSGACG00000018472	elf2b (ENSGACG00000018469)	NOCT (ENSGACG00000018465)	ENSGACG00000018463	slc43a3a (ENSGACG00000018459)	CTNND1 (ENSGACG00000018454)
Stickleback	MODERN SPECIES	4	NPTX1 (ENSGACG00000018197)	ENDOV (ENSGACG00000018198)	ENSGACG00000018202	ENSGACG00000018205	ENSGACG00000018206	trim25 (ENSGACG00000018208)	trim25 (ENSGACG00000018210)	dgke (ENSGACG00000018212)	si:dkey-31g6.6 (ENSGACG00000018215)	cbx8b (ENSGACG00000018216)	CBX4 (ENSGACG00000018219)	ENSGACG00000018220	ccdc40 (ENSGACG00000018222)	TEX2 (ENSGACG00000018223)	ENSGACG00000018225	ENSGACG00000018226 #22	SMURF2 (ENSGACG00000018228)	ENSGACG00000018230	pdcd11 (ENSGACG00000018233)	taf5 (ENSGACG00000018238)	inab (ENSGACG00000018244)	nt5c2b (ENSGACG00000018247)	ENSGACG00000018260	CNNM2 (ENSGACG00000018261)	as3mt (ENSGACG00000018262)	wbp1lb (ENSGACG00000018270)	poll (ENSGACG00000018272)	dpcd (ENSGACG00000018274)	fgf8b (ENSGACG00000018276)	slc2a15b (ENSGACG00000018278)	lbx1b (ENSGACG00000018293)
Lumpfish	MODERN SPECIES		RPTOR (ENSCLMG00005004157)	NPTX1 (ENSCLMG00005004150)	ENDOV (ENSCLMG00005004148)	ENSCLMG00005004092	ENSCLMG00005004088	ENSCLMG00005004087	trim25 (ENSCLMG00005004085)	trim25 (ENSCLMG00005004082)	dgke (ENSCLMG00005004077)	si:dkey-31g6.6 (ENSCLMG00005004075)	cbx8b (ENSCLMG00005004073)	ENSCLMG00005004072	ENSCLMG00005004071	TEX2 (ENSCLMG00005004062)	ENSCLMG00005004060	prf1.2 (ENSCLMG00005004033) #22	AXIN2 (ENSCLMG00005004031)	ENSCLMG00005004027	slc47a2.2 (ENSCLMG00005004023)	ENSCLMG00005004020	ENSCLMG00005004018	exosc9 (ENSCLMG00005004014)	ENSCLMG00005002767	scoca (ENSCLMG00005002766)	naa15b (ENSCLMG00005001117)	ENSCLMG00005001090	elf2b (ENSCLMG00005001089)	NOCT (ENSCLMG00005001076)	ENSCLMG00005001074	ENSCLMG00005001073	ENSCLMG00005001072
Perciformes_a	ANCESTRAL SPECIES		ENSGT00640000091541	ENSGT01060000248591.a.a.b.a.b	ENSGT00390000011880.b	ENSGT00940000155386.a	ENSGT00940000165433	ENSGT00940000164979.f.a	ENSGT00940000164979.f.b	ENSGT00940000158604	ENSGT00390000006555	ENSGT00940000158476.a	ENSGT00940000160081.c.a	ENSGT00940000160777	ENSGT00440000035688	ENSGT00390000000463.a	ENSGT00950000182933.B.b	ENSGT00530000063725.o #22	ENSGT00940000157338.a	ENSGT00950000183035.b.f	ENSGT00940000163234.a.b.h.a.a.b	ENSGT00940000163454.a.a.a.a	ENSGT00940000163454.a.a.b	ENSGT00950000183130.A	ENSGT00950000182915.a.a.b	ENSGT00390000008828.fb.b	ENSGT00950000183201.b.a.b	ENSGT00950000183174.B.a.e	ENSGT00940000157090.h	ENSGT00940000154953.b	ENSGT00940000155249.g	ENSGT00940000163186	ENSGT00940000157622.a.a
Channel bull blenny	MODERN SPECIES		ppp1r27b (ENSCGOG00000006175)	anapc11 (ENSCGOG00000006171)	ENSCGOG00000006170	ENSCGOG00000006161	ENSCGOG00000006159	trim25 (ENSCGOG00000006150)	ENSCGOG00000006149	dgke (ENSCGOG00000005889)	si:dkey-31g6.6 (ENSCGOG00000005855)	cbx8b (ENSCGOG00000005852)	CBX4 (ENSCGOG00000005849)	ENSCGOG00000005846	ccdc40 (ENSCGOG00000005845)	TEX2 (ENSCGOG00000005813)	ENSCGOG00000005810	prf1.2 (ENSCGOG00000005808) #22	AXIN2 (ENSCGOG00000005803)	ENSCGOG00000005801	ENSCGOG00000005800	ENSCGOG00000005799	ENSCGOG00000005781	ENSCGOG00000005776	ENSCGOG00000005716	exosc9 (ENSCGOG00000005661)	clgn (ENSCGOG00000004825)	scoca (ENSCGOG00000004792)	ENSCGOG00000004790	ENSCGOG00000004770	ENSCGOG00000004763	ENSCGOG00000004760	ENSCGOG00000004757
Pike perch	DUPLICATION
Pike perch	DUPLICATION
Pike perch	MODERN SPECIES	63	trim25 (ENSSLUG00000012399)	trim25 (ENSSLUG00000012367)	dgke (ENSSLUG00000012294)	si:dkey-31g6.6 (ENSSLUG00000012268)	cbx8b (ENSSLUG00000012263)	ENSSLUG00000012262	ENSSLUG00000012259	CARD14 (ENSSLUG00000012251)	ccdc40 (ENSSLUG00000012246)	TEX2 (ENSSLUG00000012218)	ENSSLUG00000012205	ENSSLUG00000012182 #22	ENSSLUG00000012167 #22	ENSSLUG00000012157	PRF1 (ENSSLUG00000012152) #22	PRF1 (ENSSLUG00000012142) #22	AXIN2 (ENSSLUG00000012115)	ENSSLUG00000012106	ENSSLUG00000011969	ENSSLUG00000011936	exosc9 (ENSSLUG00000011903)	clgn (ENSSLUG00000009990)	scoca (ENSSLUG00000009908)	ENSSLUG00000009906	ENSSLUG00000009904	naa15b (ENSSLUG00000010430)	ENSSLUG00000010299	elf2b (ENSSLUG00000010293)	NOCT (ENSSLUG00000010282)	ENSSLUG00000010277	ENSSLUG00000010272
Pike perch	MODERN SPECIES	63	ENSSLUG00000012420	trim25 (ENSSLUG00000012399)	trim25 (ENSSLUG00000012367)	dgke (ENSSLUG00000012294)	si:dkey-31g6.6 (ENSSLUG00000012268)	cbx8b (ENSSLUG00000012263)	ENSSLUG00000012262	ENSSLUG00000012259	CARD14 (ENSSLUG00000012251)	ccdc40 (ENSSLUG00000012246)	TEX2 (ENSSLUG00000012218)	ENSSLUG00000012205	ENSSLUG00000012182 #22	ENSSLUG00000012167 #22	ENSSLUG00000012157	PRF1 (ENSSLUG00000012152) #22	PRF1 (ENSSLUG00000012142) #22	AXIN2 (ENSSLUG00000012115)	ENSSLUG00000012106	ENSSLUG00000011969	ENSSLUG00000011936	exosc9 (ENSSLUG00000011903)	clgn (ENSSLUG00000009990)	scoca (ENSSLUG00000009908)	ENSSLUG00000009906	ENSSLUG00000009904	naa15b (ENSSLUG00000010430)	ENSSLUG00000010299	elf2b (ENSSLUG00000010293)	NOCT (ENSSLUG00000010282)	ENSSLUG00000010277
Pike perch	DUPLICATION
Pike perch	MODERN SPECIES	63	ENDOV (ENSSLUG00000012559)	ENSSLUG00000012552	ENSSLUG00000012460	ENSSLUG00000012420	trim25 (ENSSLUG00000012399)	trim25 (ENSSLUG00000012367)	dgke (ENSSLUG00000012294)	si:dkey-31g6.6 (ENSSLUG00000012268)	cbx8b (ENSSLUG00000012263)	ENSSLUG00000012262	ENSSLUG00000012259	CARD14 (ENSSLUG00000012251)	ccdc40 (ENSSLUG00000012246)	TEX2 (ENSSLUG00000012218)	ENSSLUG00000012205	ENSSLUG00000012182 #22	ENSSLUG00000012167 #22	ENSSLUG00000012157	PRF1 (ENSSLUG00000012152) #22	PRF1 (ENSSLUG00000012142) #22	AXIN2 (ENSSLUG00000012115)	ENSSLUG00000012106	ENSSLUG00000011969	ENSSLUG00000011936	exosc9 (ENSSLUG00000011903)	clgn (ENSSLUG00000009990)	scoca (ENSSLUG00000009908)	ENSSLUG00000009906	ENSSLUG00000009904	naa15b (ENSSLUG00000010430)	ENSSLUG00000010299
Pike perch	MODERN SPECIES	63	ENSSLUG00000012552	ENSSLUG00000012460	ENSSLUG00000012420	trim25 (ENSSLUG00000012399)	trim25 (ENSSLUG00000012367)	dgke (ENSSLUG00000012294)	si:dkey-31g6.6 (ENSSLUG00000012268)	cbx8b (ENSSLUG00000012263)	ENSSLUG00000012262	ENSSLUG00000012259	CARD14 (ENSSLUG00000012251)	ccdc40 (ENSSLUG00000012246)	TEX2 (ENSSLUG00000012218)	ENSSLUG00000012205	ENSSLUG00000012182 #22	ENSSLUG00000012167 #22	ENSSLUG00000012157	PRF1 (ENSSLUG00000012152) #22	PRF1 (ENSSLUG00000012142) #22	AXIN2 (ENSSLUG00000012115)	ENSSLUG00000012106	ENSSLUG00000011969	ENSSLUG00000011936	exosc9 (ENSSLUG00000011903)	clgn (ENSSLUG00000009990)	scoca (ENSSLUG00000009908)	ENSSLUG00000009906	ENSSLUG00000009904	naa15b (ENSSLUG00000010430)	ENSSLUG00000010299	elf2b (ENSSLUG00000010293)
Ballan wrasse	DUPLICATION
Ballan wrasse	MODERN SPECIES	475														TEX2 (ENSLBEG00000020236)	ENSLBEG00000020224	prf1.2 (ENSLBEG00000020217) #22	AXIN2 (ENSLBEG00000020192)	ENSLBEG00000020164	ENSLBEG00000020153	ENSLBEG00000020124
Ballan wrasse	MODERN SPECIES	243					mybpc2a (ENSLBEG00000002971)	LRRC4B (ENSLBEG00000003091)	med25 (ENSLBEG00000003159)	SYT3 (ENSLBEG00000003433)	ENSLBEG00000003519	ENSLBEG00000003663	kmt5c (ENSLBEG00000003730)	ppp1caa (ENSLBEG00000003799)	cldni (ENSLBEG00000003835)	coro1a (ENSLBEG00000003881)	paqr4a (ENSLBEG00000003962)	ENSLBEG00000003971 #22	prf1.9 (ENSLBEG00000004002)	ENSLBEG00000004029	ENSLBEG00000004066	ENSLBEG00000004141	ENSLBEG00000004158	elob (ENSLBEG00000004168)	ENSLBEG00000004185	rusf1 (ENSLBEG00000004205)	ENSLBEG00000004245	cd2bp2 (ENSLBEG00000004270)	pheta2 (ENSLBEG00000004302)	mylpfa (ENSLBEG00000004328)	tbc1d10b (ENSLBEG00000004358)	hsd3b7 (ENSLBEG00000004382)	ENSLBEG00000004399
Protacanthopterygii	ANCESTRAL SPECIES		ENSGT00940000162584.i.b	ENSGT00550000075134	ENSGT00940000163253.a.a.b	ENSGT00940000156500	ENSGT00950000183051.a.a.a	ENSGT00940000161408	ENSGT00950000182966.A.a.b.a.h	ENSGT00530000064067	ENSGT00390000002390.b.f	ENSGT00940000159463.n.b	ENSGT00940000157343.a.a	ENSGT00390000014542	ENSGT00940000154870.A.b	ENSGT00990000205603	ENSGT00940000161854.b	ENSGT00530000063725.o #22	ENSGT00730000111394	ENSGT00940000156361.A.a	ENSGT00940000164158.A.b	ENSGT00390000014273.b	ENSGT00940000160132	ENSGT00940000159088.b	ENSGT00940000164585.c.a.a.b	ENSGT00390000008274	ENSGT00390000002869	ENSGT00940000154879.d	ENSGT00940000156985.h	ENSGT00390000014184	ENSGT00940000164105.b.a	ENSGT00940000166438	ENSGT00570000079224.i
Northern pike	DUPLICATION
Northern pike	DUPLICATION
Northern pike	MODERN SPECIES	23	KDM6B (ENSELUG00000024374)	DNAH2 (ENSELUG00000024301)	efnb3b (ENSELUG00000024041)	wrap53 (ENSELUG00000024012)	GIGYF1 (ENSELUG00000023998)	pop7 (ENSELUG00000023947)	epoa (ENSELUG00000023933)	ufsp1 (ENSELUG00000023895)	ENSELUG00000023889	ENSELUG00000023854	ENSELUG00000030077 #22	ENSELUG00000023821	ENSELUG00000032612 #22	ENSELUG00000026935 #22	ENSELUG00000032865 #22	ENSELUG00000033373 #22	ENSELUG00000027776 #22	ENSELUG00000029732 #22	ENSELUG00000023226	ENSELUG00000023217	tmem102 (ENSELUG00000023178)	fgf11a (ENSELUG00000023166)	chrnb1 (ENSELUG00000023150)	ENSELUG00000023099	chrnb1l (ENSELUG00000023143)	cldn7a (ENSELUG00000023089)	ENSELUG00000031040	ENSELUG00000023059	ugt5g1 (ENSELUG00000023037)	ENSELUG00000023036	PTGDR2 (ENSELUG00000023025)
Northern pike	MODERN SPECIES	23	ttc5 (ENSELUG00000024492)	ENSELUG00000027238	mettl3 (ENSELUG00000024439)	tm4sf5 (ENSELUG00000024384)	tmem88b (ENSELUG00000027140)	KDM6B (ENSELUG00000024374)	DNAH2 (ENSELUG00000024301)	efnb3b (ENSELUG00000024041)	wrap53 (ENSELUG00000024012)	GIGYF1 (ENSELUG00000023998)	pop7 (ENSELUG00000023947)	epoa (ENSELUG00000023933)	ufsp1 (ENSELUG00000023895)	ENSELUG00000023889	ENSELUG00000023854	ENSELUG00000030077 #22	ENSELUG00000023821	ENSELUG00000032612 #22	ENSELUG00000026935 #22	ENSELUG00000032865 #22	ENSELUG00000033373 #22	ENSELUG00000027776 #22	ENSELUG00000029732 #22	ENSELUG00000023226	ENSELUG00000023217	tmem102 (ENSELUG00000023178)	fgf11a (ENSELUG00000023166)	chrnb1 (ENSELUG00000023150)	ENSELUG00000023099	chrnb1l (ENSELUG00000023143)	cldn7a (ENSELUG00000023089)
Northern pike	DUPLICATION
Northern pike	DUPLICATION
Northern pike	MODERN SPECIES	23	mettl3 (ENSELUG00000024439)	tm4sf5 (ENSELUG00000024384)	tmem88b (ENSELUG00000027140)	KDM6B (ENSELUG00000024374)	DNAH2 (ENSELUG00000024301)	efnb3b (ENSELUG00000024041)	wrap53 (ENSELUG00000024012)	GIGYF1 (ENSELUG00000023998)	pop7 (ENSELUG00000023947)	epoa (ENSELUG00000023933)	ufsp1 (ENSELUG00000023895)	ENSELUG00000023889	ENSELUG00000023854	ENSELUG00000030077 #22	ENSELUG00000023821	ENSELUG00000032612 #22	ENSELUG00000026935 #22	ENSELUG00000032865 #22	ENSELUG00000033373 #22	ENSELUG00000027776 #22	ENSELUG00000029732 #22	ENSELUG00000023226	ENSELUG00000023217	tmem102 (ENSELUG00000023178)	fgf11a (ENSELUG00000023166)	chrnb1 (ENSELUG00000023150)	ENSELUG00000023099	chrnb1l (ENSELUG00000023143)	cldn7a (ENSELUG00000023089)	ENSELUG00000031040	ENSELUG00000023059
Northern pike	MODERN SPECIES	23	tmem88b (ENSELUG00000027140)	KDM6B (ENSELUG00000024374)	DNAH2 (ENSELUG00000024301)	efnb3b (ENSELUG00000024041)	wrap53 (ENSELUG00000024012)	GIGYF1 (ENSELUG00000023998)	pop7 (ENSELUG00000023947)	epoa (ENSELUG00000023933)	ufsp1 (ENSELUG00000023895)	ENSELUG00000023889	ENSELUG00000023854	ENSELUG00000030077 #22	ENSELUG00000023821	ENSELUG00000032612 #22	ENSELUG00000026935 #22	ENSELUG00000032865 #22	ENSELUG00000033373 #22	ENSELUG00000027776 #22	ENSELUG00000029732 #22	ENSELUG00000023226	ENSELUG00000023217	tmem102 (ENSELUG00000023178)	fgf11a (ENSELUG00000023166)	chrnb1 (ENSELUG00000023150)	ENSELUG00000023099	chrnb1l (ENSELUG00000023143)	cldn7a (ENSELUG00000023089)	ENSELUG00000031040	ENSELUG00000023059	ugt5g1 (ENSELUG00000023037)	ENSELUG00000023036
Northern pike	DUPLICATION
Northern pike	DUPLICATION
Northern pike	MODERN SPECIES	23	DNAH2 (ENSELUG00000024301)	efnb3b (ENSELUG00000024041)	wrap53 (ENSELUG00000024012)	GIGYF1 (ENSELUG00000023998)	pop7 (ENSELUG00000023947)	epoa (ENSELUG00000023933)	ufsp1 (ENSELUG00000023895)	ENSELUG00000023889	ENSELUG00000023854	ENSELUG00000030077 #22	ENSELUG00000023821	ENSELUG00000032612 #22	ENSELUG00000026935 #22	ENSELUG00000032865 #22	ENSELUG00000033373 #22	ENSELUG00000027776 #22	ENSELUG00000029732 #22	ENSELUG00000023226	ENSELUG00000023217	tmem102 (ENSELUG00000023178)	fgf11a (ENSELUG00000023166)	chrnb1 (ENSELUG00000023150)	ENSELUG00000023099	chrnb1l (ENSELUG00000023143)	cldn7a (ENSELUG00000023089)	ENSELUG00000031040	ENSELUG00000023059	ugt5g1 (ENSELUG00000023037)	ENSELUG00000023036	PTGDR2 (ENSELUG00000023025)	fxr2 (ENSELUG00000023014)
Northern pike	MODERN SPECIES	23	tm4sf5 (ENSELUG00000024384)	tmem88b (ENSELUG00000027140)	KDM6B (ENSELUG00000024374)	DNAH2 (ENSELUG00000024301)	efnb3b (ENSELUG00000024041)	wrap53 (ENSELUG00000024012)	GIGYF1 (ENSELUG00000023998)	pop7 (ENSELUG00000023947)	epoa (ENSELUG00000023933)	ufsp1 (ENSELUG00000023895)	ENSELUG00000023889	ENSELUG00000023854	ENSELUG00000030077 #22	ENSELUG00000023821	ENSELUG00000032612 #22	ENSELUG00000026935 #22	ENSELUG00000032865 #22	ENSELUG00000033373 #22	ENSELUG00000027776 #22	ENSELUG00000029732 #22	ENSELUG00000023226	ENSELUG00000023217	tmem102 (ENSELUG00000023178)	fgf11a (ENSELUG00000023166)	chrnb1 (ENSELUG00000023150)	ENSELUG00000023099	chrnb1l (ENSELUG00000023143)	cldn7a (ENSELUG00000023089)	ENSELUG00000031040	ENSELUG00000023059	ugt5g1 (ENSELUG00000023037)
Northern pike	MODERN SPECIES	23	efnb3b (ENSELUG00000024041)	wrap53 (ENSELUG00000024012)	GIGYF1 (ENSELUG00000023998)	pop7 (ENSELUG00000023947)	epoa (ENSELUG00000023933)	ufsp1 (ENSELUG00000023895)	ENSELUG00000023889	ENSELUG00000023854	ENSELUG00000030077 #22	ENSELUG00000023821	ENSELUG00000032612 #22	ENSELUG00000026935 #22	ENSELUG00000032865 #22	ENSELUG00000033373 #22	ENSELUG00000027776 #22	ENSELUG00000029732 #22	ENSELUG00000023226	ENSELUG00000023217	tmem102 (ENSELUG00000023178)	fgf11a (ENSELUG00000023166)	chrnb1 (ENSELUG00000023150)	ENSELUG00000023099	chrnb1l (ENSELUG00000023143)	cldn7a (ENSELUG00000023089)	ENSELUG00000031040	ENSELUG00000023059	ugt5g1 (ENSELUG00000023037)	ENSELUG00000023036	PTGDR2 (ENSELUG00000023025)	fxr2 (ENSELUG00000023014)	ponzr6 (ENSELUG00000022425)
Salmoninae	DUPLICATION
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	492	ENSGT00530000063506.B.k	ENSGT00940000160134.k.a	ENSGT00940000155384.b.b.d	ENSGT00390000006227.c	ENSGT00550000075058	ENSGT01030000234590.B.a.b	ENSGT00940000163776.a.a.d	ENSGT00940000160414.c	ENSGT00980000202504	ENSGT00940000160323.a.a.f.a	ENSGT00390000010169.d	ENSGT00940000159845.a.a.c	ENSGT00510000048483.h	ENSGT00390000017226.j.b	ENSGT01030000234592.A.b.b.a.b.a.a.a.a	ENSGT00530000063725.o.qb.a #22	ENSGT00940000154390.G.a.hb.a.b	ENSGT00940000154390.G.a.hb.a.a	ENSGT00940000160598
Huchen	MODERN SPECIES	3765															ENSHHUG00000041231	PRF1 (ENSHHUG00000041228) #22	ENSHHUG00000041224	ENSHHUG00000041222	nlgn2a (ENSHHUG00000041215)	ENSHHUG00000041214
Salmoninae_a	ANCESTRAL SPECIES	34	ENSGT00500000044904.a.b.g.b.c.a.b	ENSGT00940000160134.l	ENSGT00940000155384.b.b.d	ENSGT00390000006227.c	ENSGT00550000075058	ENSGT01030000234590.B.a.b	ENSGT00940000163776.a.a.d	ENSGT00940000160414.c	ENSGT00980000202504	ENSGT00940000160323.a.a.f.a	ENSGT00390000010169.d	ENSGT00940000159845.a.a.c	ENSGT00510000048483.h	ENSGT00390000017226.j.b	ENSGT01030000234592.A.b.b.a.b.a.a.a.a	ENSGT00530000063725.o.qb.a #22	ENSGT00940000154390.A	ENSGT00940000154390.G.a.hb.a.b	ENSGT00940000154390.G.a.hb.a.a.a	ENSGT00940000160598	ENSGT00940000166430.bb.a	ENSGT00390000000334.e	ENSGT01050000244976.b.b.b.a.b.g	ENSGT00940000158058.a.a.a	ENSGT00940000158661.b.g	ENSGT00940000166258.d.b	ENSGT00940000163701.b.b.d	ENSGT00940000163701.b.a.a.a.a.b	ENSGT00940000166282.A	ENSGT00950000183136.b.a.b.h	ENSGT00940000162009.a.b
Salmo	ANCESTRAL SPECIES	51	ENSGT00530000063506.B.k	ENSGT00940000160134.k.a	ENSGT00940000155384.b.b.d	ENSGT00390000006227.c	ENSGT00550000075058.m	ENSGT01030000234590.B.a.b	ENSGT00940000163776.a.a.d	ENSGT00940000160414.c	ENSGT00980000202504	ENSGT00940000160323.a.a.f.a	ENSGT00390000010169.d	ENSGT00940000159845.a.a.c	ENSGT00510000048483.h	ENSGT00390000017226.j.b	ENSGT01030000234592.A.b.b.a.b.a.a.a.a	ENSGT00530000063725.o.qb.a #22	ENSGT00940000154390.G.a.hb.a.b	ENSGT00940000154390.G.a.hb.a.a.a	ENSGT00940000166430.bb.a	ENSGT00390000000334.e	ENSGT01050000244976.b.b.b.a.b.g	ENSGT00940000158058.a.a.a	ENSGT00940000163520.A.a.a.a.a.a.a.g.a.a.a.a.b	ENSGT00940000158661.b.g	ENSGT00940000166258.d.b	ENSGT00940000163701.b.b.d	ENSGT00940000163701.b.a.a.a.a.b	ENSGT00940000166282.A	ENSGT00950000183136.b.a.b.h	ENSGT00940000162009.a.b	ENSGT00950000183189.a.a.h
Atlantic salmon	MODERN SPECIES	9	ENSSSAG00000066447	oxa1l (ENSSSAG00000066438)	slc7a7 (ENSSSAG00000066369)	ENSSSAG00000066359	ttc5 (ENSSSAG00000066347)	mettl3 (ENSSSAG00000066322)	tm4sf5 (ENSSSAG00000066308)	ENSSSAG00000066304	KDM6B (ENSSSAG00000066288)	ENSSSAG00000066277	ENSSSAG00000095137	ENSSSAG00000043900	efnb3b (ENSSSAG00000085683)	WRAP53 (ENSSSAG00000066260)	ENSSSAG00000065743	PERF (ENSSSAG00000065678) #22	ENSSSAG00000065659	ENSSSAG00000065593	tmem256 (ENSSSAG00000096493)	tmem102 (ENSSSAG00000065552)	fgf11a (ENSSSAG00000121564)	ENSSSAG00000065540	chrnb1l (ENSSSAG00000065525)	cldn7a (ENSSSAG00000084211)	ENSSSAG00000065517	ENSSSAG00000065514	ugt5g1 (ENSSSAG00000065510)	ENSSSAG00000091446	ENSSSAG00000054893	ENSSSAG00000054776	ENSSSAG00000117989
River trout	MODERN SPECIES	35	oxa1l (ENSSTUG00000002556)	slc7a7 (ENSSTUG00000002445)	ENSSTUG00000002428	ttc5 (ENSSTUG00000002391)	mettl3 (ENSSTUG00000002345)	tm4sf5 (ENSSTUG00000002332)	tmem88b (ENSSTUG00000002327)	KDM6B (ENSSTUG00000002313)	ENSSTUG00000002286	efnb3b (ENSSTUG00000002274)	wrap53 (ENSSTUG00000002237)	GIGYF1 (ENSSTUG00000002215)	pop7 (ENSSTUG00000002204)	epoa (ENSSTUG00000002193)	ENSSTUG00000002180	ENSSTUG00000002126 #22	ENSSTUG00000002057	ENSSTUG00000002045	ENSSTUG00000002041	ENSSTUG00000001848	ENSSTUG00000001821	tmem256 (ENSSTUG00000001812)	tmem102 (ENSSTUG00000001807)	fgf11a (ENSSTUG00000001793)	ENSSTUG00000001789	chrnb1l (ENSSTUG00000001770)	cldn7a (ENSSTUG00000001766)	ENSSTUG00000001762	ENSSTUG00000001756	ugt5g1 (ENSSTUG00000001752)	ENSSTUG00000001747
Oncorhynchus	ANCESTRAL SPECIES	31	ENSGT00530000063506.B.k	ENSGT00940000160134.k.a	ENSGT00940000155384.b.b.d	ENSGT00390000006227.c	ENSGT00550000075058	ENSGT01030000234590.B.a.b	ENSGT00940000163776.a.a.d	ENSGT00940000160414.c	ENSGT00980000202504	ENSGT01100000264362	ENSGT00940000160323.a.a.f.b	ENSGT00940000159845.a.a.c	ENSGT00510000048483.h	ENSGT00390000017226.j.b	ENSGT01030000234592.A.b.b.a.b.a.a.a.a	ENSGT00530000063725.o.qb.a #22	ENSGT00940000154390.A	ENSGT00940000154390.G.a.hb.a.b	ENSGT00940000154390.G.a.hb.a.a.a	ENSGT00940000160598	ENSGT00940000166430.bb.a	ENSGT00390000000334.e	ENSGT01050000244976.b.b.b.a.b.g	ENSGT00940000158058.a.a.a	ENSGT00940000158661.b.g	ENSGT00940000166258.d.b	ENSGT00940000163701.b.b.d	ENSGT00940000163701.b.a.a.a.a.b	ENSGT00940000166282.A	ENSGT00950000183136.b.a.b.h	ENSGT00940000162009.a.b
Oncorhynchus_a	ANCESTRAL SPECIES	30	ENSGT00530000063506.B.k	ENSGT00940000160134.k.a	ENSGT00940000155384.b.b.d	ENSGT00390000006227.c	ENSGT00550000075058	ENSGT01030000234590.B.a.b	ENSGT00940000163776.a.a.d	ENSGT00940000160414.c	ENSGT00980000202504	ENSGT01100000264362	ENSGT00940000160323.a.a.f.b	ENSGT00940000159845.a.a.c	ENSGT00510000048483.h	ENSGT00390000017226.j.b	ENSGT01030000234592.A.b.b.a.b.a.a.a.a	ENSGT00530000063725.o.qb.a #22	ENSGT00940000154390.A	ENSGT00940000154390.G.a.hb.a.b	ENSGT00940000154390.G.a.hb.a.a.a	ENSGT00940000160598	ENSGT00940000166430.bb.a	ENSGT00390000000334.e	ENSGT01050000244976.b.b.b.a.b.g	ENSGT00940000158058.a.a.a	ENSGT00940000158661.b.g	ENSGT00940000166258.d.b	ENSGT00940000163701.b.b.d	ENSGT00940000163701.b.a.a.a.a.b	ENSGT00940000166282.A	ENSGT00950000183136.b.a.b.h	ENSGT00940000162009.a.b
Chinook salmon	MODERN SPECIES	107												wrap53 (ENSOTSG00005012487)	GIGYF1 (ENSOTSG00005012486)	pop7 (ENSOTSG00005012485)	epoa (ENSOTSG00005012484)	ENSOTSG00005012483 #22	ENSOTSG00005012482	ENSOTSG00005012481	ENSOTSG00005012480	nlgn2a (ENSOTSG00005012479)	ENSOTSG00005012478	lsm8 (ENSOTSG00005012477)	TYMP (ENSOTSG00005012464)	ENSOTSG00005044187
Coho salmon	MODERN SPECIES	7	slc7a7 (ENSOKIG00005032966)	ENSOKIG00005033081	ttc5 (ENSOKIG00005033086)	ENSOKIG00005033103	mettl3 (ENSOKIG00005033117)	tm4sf5 (ENSOKIG00005033477)	tmem88b (ENSOKIG00005033509)	ENSOKIG00005033518	ENSOKIG00005033539	ENSOKIG00005033555	ENSOKIG00005033612	efnb3b (ENSOKIG00005033617)	GIGYF1 (ENSOKIG00005033662)	pop7 (ENSOKIG00005033732)	ENSOKIG00005033739	ENSOKIG00005033752 #22	ENSOKIG00005033762	ENSOKIG00005033780	ENSOKIG00005033799	ENSOKIG00005033864	tmem256 (ENSOKIG00005034534)	tmem102 (ENSOKIG00005034540)	fgf11a (ENSOKIG00005034545)	chrnb1l (ENSOKIG00005034575)	cldn7a (ENSOKIG00005034623)	ENSOKIG00005034645	ENSOKIG00005034655	ugt5g1 (ENSOKIG00005034665)	ENSOKIG00005034673	PTGDR2 (ENSOKIG00005034705)	fxr2 (ENSOKIG00005034803)
Rainbow trout	MODERN SPECIES	30	tm4sf5 (ENSOMYG00000014080)	ENSOMYG00000074414	tmem88b (ENSOMYG00000014085)	KDM6B (ENSOMYG00000014108)	ENSOMYG00000014172	ENSOMYG00000064569	ENSOMYG00000014205	efnb3b (ENSOMYG00000014246)	ENSOMYG00000053766	wrap53 (ENSOMYG00000051209)	ENSOMYG00000062635	ENSOMYG00000014289	ENSOMYG00000014309	ENSOMYG00000014318	ENSOMYG00000065299	ENSOMYG00000014360 #22	ENSOMYG00000049515	ENSOMYG00000014384	ENSOMYG00000014392	ENSOMYG00000014420	ENSOMYG00000057272	ENSOMYG00000066494	tmem256 (ENSOMYG00000015140)	tmem102 (ENSOMYG00000015147)	fgf11a (ENSOMYG00000015154)	ENSOMYG00000072517	chrnb1l (ENSOMYG00000015167)	ENSOMYG00000055505	cldn7a (ENSOMYG00000068124)	ENSOMYG00000015193	ENSOMYG00000055562
Salmoninae	ANCESTRAL SPECIES	53	ENSGT00390000006227.d	ENSGT00940000163776.a.a.c	ENSGT00940000155202.h.a.a	ENSGT00940000157623	ENSGT00940000167281	ENSGT00940000160323.a.a.e	ENSGT00390000010169.c	ENSGT01100000263489.a.a.b.b.f.c.a.a.a.a.b	ENSGT00940000159845.a.a.d	ENSGT00510000048483.g	ENSGT00390000017226.j.a	ENSGT00940000162936	ENSGT01030000234592.A.b.b.a.b.a.a.a.b	ENSGT01030000234592.A.b.b.a.b.b.a	ENSGT01030000234592.A.b.b.a.a	ENSGT00530000063725.o.qb.b #22	ENSGT00940000154390.G.a.hb.b	ENSGT00940000166430.bb.b	ENSGT00390000000334.f	ENSGT01050000244976.b.b.b.a.b.h	ENSGT00940000158058.a.a.b	ENSGT00940000158661.a	ENSGT00940000158661.b.h	ENSGT00940000166258.d.a	ENSGT00940000166430.bb.a	ENSGT00390000000334.e	ENSGT01050000244976.b.b.b.a.b.g	ENSGT00940000158058.a.a.a	ENSGT00940000158661.b.g	ENSGT00940000166258.d.b	ENSGT00940000163701.b.b.d
Salmoninae_a	ANCESTRAL SPECIES	20	ENSGT00390000006227.d	ENSGT00940000163776.a.a.c	ENSGT00940000155202.h.a.a	ENSGT00940000157623	ENSGT00940000167281	ENSGT00940000160323.a.a.e	ENSGT00390000010169.c	ENSGT01100000263489.a.a.b.b.f.c.a.a.a.a.b	ENSGT00940000159845.a.a.d	ENSGT00510000048483.g	ENSGT00390000017226.j.a	ENSGT00940000162936	ENSGT01030000234592.A.b.b.a.b.a.a.a.b	ENSGT01030000234592.A.b.b.a.b.b.a	ENSGT01030000234592.A.b.b.a.a	ENSGT00530000063725.o.qb.b #22	ENSGT00940000154390.G.a.hb.b	ENSGT00940000166430.bb.b	ENSGT00390000000334.f	ENSGT01050000244976.b.b.b.a.b.h	ENSGT00940000158058.a.a.b	ENSGT00940000158661.a	ENSGT00940000158661.b.h	ENSGT00940000166258.d.a	ENSGT00940000163701.b.b.c	ENSGT00940000163701.b.a.a.a.a.a	ENSGT00950000183136.b.a.b.g	ENSGT00940000162009.a.a	ENSGT00950000183189.a.a.g	ENSGT00940000163927.a.b	ENSGT00940000165455.b.a
Salmo	ANCESTRAL SPECIES	70	ENSGT00550000075058.n	ENSGT00940000163776.a.a.c	ENSGT00940000155202.h.a.a	ENSGT00940000157623	ENSGT00940000167281	ENSGT00940000160323.a.a.e	ENSGT00390000010169.c	ENSGT01100000263489.a.a.b.b.f.c.a.a.a.a.b	ENSGT00940000159845.a.a.d	ENSGT00510000048483.g	ENSGT00390000017226.j.a	ENSGT00940000162936	ENSGT01030000234592.A.b.b.a.b.a.a.a.b	ENSGT01030000234592.A.b.b.a.b.b.a	ENSGT01030000234592.A.b.b.a.a	ENSGT00530000063725.o.qb.b #22	ENSGT00940000154390.G.a.hb.b	ENSGT00940000166430.bb.b	ENSGT00390000000334.f	ENSGT01050000244976.b.b.b.a.b.h	ENSGT00940000158058.a.a.b	ENSGT00940000158661.a	ENSGT00940000158661.b.h	ENSGT00940000166258.d.a	ENSGT00940000163701.b.b.c	ENSGT00940000163701.b.a.a.a.a.a	ENSGT00950000183136.b.a.b.g	ENSGT00940000162009.a.a	ENSGT00950000183189.a.a.g	ENSGT00940000163927.a.b	ENSGT00940000165455.b.a
River trout	MODERN SPECIES	38	ttc5 (ENSSTUG00000023847)	tmem88b (ENSSTUG00000023835)	ENSSTUG00000047550	DNAH2 (ENSSTUG00000047452)	ENSSTUG00000047438	efnb3b (ENSSTUG00000047430)	wrap53 (ENSSTUG00000047415)	ENSSTUG00000047414	GIGYF1 (ENSSTUG00000047317)	pop7 (ENSSTUG00000047311)	epoa (ENSSTUG00000047306)	ENSSTUG00000047304	ENSSTUG00000047302	ENSSTUG00000047298	ENSSTUG00000047291	ENSSTUG00000047278 #22	ENSSTUG00000047269	ENSSTUG00000047007	ENSSTUG00000046991	tmem102 (ENSSTUG00000046982)	fgf11a (ENSSTUG00000046978)	chrnb1 (ENSSTUG00000046898)	chrnb1l (ENSSTUG00000046886)	cldn7a (ENSSTUG00000046881)	ENSSTUG00000046871	ENSSTUG00000046863	ENSSTUG00000046855	PTGDR2 (ENSSTUG00000046850)	fxr2 (ENSSTUG00000045929)	ponzr6 (ENSSTUG00000045872)	ponzr6 (ENSSTUG00000045832)
Atlantic salmon	MODERN SPECIES	26	ENSSSAG00000117468	ENSSSAG00000110523	tmem88b (ENSSSAG00000112620)	ENSSSAG00000005734	DNAH2 (ENSSSAG00000005591)	serpinh2 (ENSSSAG00000005564)	efnb3b (ENSSSAG00000066272)	wrap53 (ENSSSAG00000005534)	ENSSSAG00000005532	pop7 (ENSSSAG00000085896)	gigyf1 (ENSSSAG00000005485)	ufsp1 (ENSSSAG00000108653)	ENSSSAG00000005454	ENSSSAG00000005452	ENSSSAG00000084975	ENSSSAG00000005439 #22	ENSSSAG00000005431	ENSSSAG00000081622	tmem256 (ENSSSAG00000081618)	tmem102 (ENSSSAG00000103895)	ENSSSAG00000096422	fgf11a (ENSSSAG00000081614)	chrnb1 (ENSSSAG00000081612)	ENSSSAG00000097107	chrnb1l (ENSSSAG00000099212)	cldn7a (ENSSSAG00000081611)	ENSSSAG00000081609	ENSSSAG00000088265	ENSSSAG00000093788	ENSSSAG00000081607	ENSSSAG00000098606
Oncorhynchus	ANCESTRAL SPECIES	9	ENSGT00940000155384.b.b.c	ENSGT00390000002849	ENSGT00390000006227.d	ENSGT00940000163776.a.a.c	ENSGT00940000155202.h.a.b.b	ENSGT00940000157623	ENSGT00390000010169.c	ENSGT01100000263489.a.a.b.b.f.c.a.a.a.a.b	ENSGT00940000159845.a.a.d	ENSGT00510000048483.g	ENSGT00390000017226.j.a	ENSGT00940000162936	ENSGT01030000234592.A.b.b.a.b.a.a.a.b	ENSGT01030000234592.A.b.b.a.b.b.a	ENSGT01030000234592.A.b.b.a.a	ENSGT00530000063725.o.qb.b #22	ENSGT00940000154390.G.a.hb.b	ENSGT00940000166430.bb.b	ENSGT00390000000334.f	ENSGT01050000244976.b.b.b.a.b.h	ENSGT00940000158058.a.a.b	ENSGT00940000158661.a	ENSGT00940000158661.b.h	ENSGT00940000166258.d.a	ENSGT00940000163701.b.b.c	ENSGT00940000163701.b.a.a.a.a.a	ENSGT00950000183136.b.a.b.g	ENSGT00940000162009.a.a	ENSGT00950000183189.a.a.g	ENSGT00940000163927.a.b	ENSGT00940000165455.b.a
Oncorhynchus_a	ANCESTRAL SPECIES	16	ENSGT00940000160134.k.b	ENSGT00940000155384.b.b.c	ENSGT00390000002849	ENSGT00390000006227.d	ENSGT00940000163776.a.a.c	ENSGT00940000155202.h.a.b.b	ENSGT00390000010169.c	ENSGT01100000263489.a.a.b.b.f.c.a.a.a.a.b	ENSGT00940000159845.a.a.d	ENSGT00510000048483.g	ENSGT00390000017226.j.a	ENSGT00940000162936	ENSGT01030000234592.A.b.b.a.b.a.a.a.b	ENSGT01030000234592.A.b.b.a.b.b.a	ENSGT01030000234592.A.b.b.a.a	ENSGT00530000063725.o.qb.b #22	ENSGT00940000154390.G.a.hb.b	ENSGT00940000166430.bb.b	ENSGT00390000000334.f	ENSGT01050000244976.b.b.b.a.b.h	ENSGT00940000158058.a.a.b	ENSGT00940000158661.a	ENSGT00940000158661.b.h	ENSGT00940000166258.d.a	ENSGT00940000163701.b.b.c	ENSGT00940000163701.b.a.a.a.a.a	ENSGT00950000183136.b.a.b.g	ENSGT00940000162009.a.a	ENSGT00950000183189.a.a.g	ENSGT00940000163927.a.b	ENSGT00940000165455.b.a
Coho salmon	MODERN SPECIES	29	ENSOKIG00005016474	tmem88b (ENSOKIG00005016479)	ENSOKIG00005016498	ENSOKIG00005016596	ENSOKIG00005016599	ENSOKIG00005016612	wrap53 (ENSOKIG00005016615)	ENSOKIG00005016623	ENSOKIG00005016632	pop7 (ENSOKIG00005016713)	epoa (ENSOKIG00005016719)	ufsp1 (ENSOKIG00005016725)	ENSOKIG00005001840	ENSOKIG00005001854	ENSOKIG00005001864	ENSOKIG00005001885 #22	ENSOKIG00005001913	ENSOKIG00005001988	tmem256 (ENSOKIG00005002188)	tmem102 (ENSOKIG00005002202)	fgf11a (ENSOKIG00005002227)	chrnb1 (ENSOKIG00005002283)	chrnb1l (ENSOKIG00005002436)	cldn7a (ENSOKIG00005002450)	ENSOKIG00005002456	ENSOKIG00005002459	ENSOKIG00005002468	ENSOKIG00005002474	PTGDR2 (ENSOKIG00005002482)	ENSOKIG00005002487	FXR2 (ENSOKIG00005002610)
Chinook salmon	MODERN SPECIES	146						wrap53 (ENSOTSG00005028855)	ENSOTSG00005028913	GIGYF1 (ENSOTSG00005028914)	pop7 (ENSOTSG00005028916)	epoa (ENSOTSG00005028917)	ufsp1 (ENSOTSG00005028921)	ENSOTSG00005028922	ENSOTSG00005028924	ENSOTSG00005028926	ENSOTSG00005028927	ENSOTSG00005028928 #22	ENSOTSG00005028929
Rainbow trout	MODERN SPECIES	13	ttc5 (ENSOMYG00000036368)	ENSOMYG00000057963	ENSOMYG00000036670	ENSOMYG00000048905	ENSOMYG00000036677	ENSOMYG00000060188	ENSOMYG00000036707	ENSOMYG00000036754	ENSOMYG00000036777	ENSOMYG00000056994	pop7 (ENSOMYG00000036794)	epoa (ENSOMYG00000036801)	ufsp1 (ENSOMYG00000063769)	ENSOMYG00000036818	ENSOMYG00000036824	ENSOMYG00000036810 #22	ENSOMYG00000036832	ENSOMYG00000070300	ENSOMYG00000036840	tmem256 (ENSOMYG00000036859)	tmem102 (ENSOMYG00000036866)	fgf11a (ENSOMYG00000036872)	chrnb1 (ENSOMYG00000036892)	cldn7a (ENSOMYG00000037017)	ENSOMYG00000052363	ENSOMYG00000037022	ENSOMYG00000037023	ENSOMYG00000037030	ENSOMYG00000037383	ponzr6 (ENSOMYG00000040081)	rbm4.3 (ENSOMYG00000014956)
Huchen	DUPLICATION
Huchen	MODERN SPECIES	5342											ufsp1 (ENSHHUG00000030441)	ENSHHUG00000030439	ENSHHUG00000030435	ENSHHUG00000030432	ENSHHUG00000030427	ENSHHUG00000030426 #22
Huchen	MODERN SPECIES	8117																ENSHHUG00000001305 #22
Salmoninae	ANCESTRAL SPECIES	245											ENSGT00940000157343.a.a.m	ENSGT00390000014542.d	ENSGT00940000154870.A.b.d	ENSGT00990000205603	ENSGT00940000161854.b.c	ENSGT00530000063725.o.rb #22	ENSGT00940000164158.A.b.c	ENSGT00390000014273.b.k	ENSGT00940000160132.o	ENSGT00940000159088.b.f	ENSGT00940000164585.c.a.a.b.c	ENSGT00390000008274.b	ENSGT00390000002869.vb.b	ENSGT00940000154879.d.b	ENSGT00940000156985.h.a	ENSGT00390000014184.m	ENSGT00940000164105.b.a.a	ENSGT00940000166438.c	ENSGT00570000079224.i.b	ENSGT00390000005131.l	ENSGT00390000010652.A.a.b.e.b
Salmoninae_a	ANCESTRAL SPECIES	48										ENSGT00940000157343.a.a.m	ENSGT00390000014542.d	ENSGT00940000154870.A.b.d	ENSGT00940000161854.b.c.a	ENSGT00990000205603	ENSGT00940000161854.b.c.b	ENSGT00530000063725.o.rb #22	ENSGT00940000164158.A.b.c	ENSGT00390000014273.b.k	ENSGT00940000160132.o	ENSGT00940000159088.b.f	ENSGT00940000164585.c.a.a.b.c	ENSGT00390000008274.b	ENSGT00390000002869.vb.b	ENSGT00940000154879.d.b	ENSGT00940000156985.h.a	ENSGT00390000014184.m	ENSGT00940000164105.b.a.a	ENSGT00940000166438.c	ENSGT00570000079224.i.b	ENSGT00390000005131.l	ENSGT00390000010652.A.a.b.e.b
Oncorhynchus	ANCESTRAL SPECIES	40										ENSGT00940000157343.a.a.m	ENSGT00390000014542.d	ENSGT00940000154870.A.b.d	ENSGT00940000161854.b.c.a	ENSGT00990000205603	ENSGT00940000161854.b.c.b	ENSGT00530000063725.o.rb #22	ENSGT00940000164158.A.b.c	ENSGT00390000014273.b.k	ENSGT00940000160132.o	ENSGT00940000159088.b.f	ENSGT00940000164585.c.a.a.b.c	ENSGT00390000008274.b	ENSGT00390000002869.vb.b	ENSGT00940000154879.d.b	ENSGT00940000156985.h.a	ENSGT00390000014184.m	ENSGT00940000164105.b.a.a	ENSGT00940000166438.c	ENSGT00570000079224.i.b	ENSGT00390000005131.l	ENSGT00390000010652.A.a.b.e.b
Oncorhynchus_a	ANCESTRAL SPECIES	45											ENSGT00940000157343.a.a.m	ENSGT00390000014542.c.b	ENSGT00940000154870.A.b.d	ENSGT00990000205603	ENSGT00940000161854.b.c.b	ENSGT00530000063725.o.rb #22	ENSGT00940000164158.A.b.c	ENSGT00390000014273.b.k	ENSGT00940000160132.o	ENSGT00940000159088.b.f	ENSGT00940000164585.c.a.a.b.c	ENSGT00390000008274.b	ENSGT00390000002869.vb.b	ENSGT00940000154879.d.b	ENSGT00940000156985.h.a	ENSGT00390000014184.m	ENSGT00940000164105.b.a.a	ENSGT00940000166438.c	ENSGT00570000079224.i.b	ENSGT00390000005131.l	ENSGT00390000010652.A.a.b.e.b
Chinook salmon	MODERN SPECIES	24	tshz1 (ENSOTSG00005041902)	znf516 (ENSOTSG00005041903)	ENSOTSG00005041905	ENSOTSG00005041906	ENSOTSG00005041907	ENSOTSG00005041909	msto1 (ENSOTSG00005041924)	ENSOTSG00005041925	ENSOTSG00005041926	mef2d (ENSOTSG00005041929)	BCAN (ENSOTSG00005041932)	mrpl24 (ENSOTSG00005042479)	ENSOTSG00005042480	ENSOTSG00005042481	s100v2 (ENSOTSG00005042483)	prf1.2 (ENSOTSG00005042485) #22	zgc:64022 (ENSOTSG00005042487)	pex11b (ENSOTSG00005042488)	rit1 (ENSOTSG00005042489)	syt11a (ENSOTSG00005042490)	smad10a (ENSOTSG00005042491)	snapin (ENSOTSG00005042492)	chtopa (ENSOTSG00005042493)	ilf2 (ENSOTSG00005042498)	npr1a (ENSOTSG00005042723)	ints3 (ENSOTSG00005003186)	pdia8 (ENSOTSG00005003303)	cct3 (ENSOTSG00005003462)	glmp (ENSOTSG00005003521)	ENSOTSG00005003525	jtb (ENSOTSG00005003528)
Coho salmon	MODERN SPECIES	5	ENSOKIG00005020716	ENSOKIG00005020698	cndp2 (ENSOKIG00005018519)	TSHZ1 (ENSOKIG00005018405)	znf516 (ENSOKIG00005018381)	ENSOKIG00005018369	ENSOKIG00005018333	ENSOKIG00005018329	ENSOKIG00005018322	msto1 (ENSOKIG00005018277)	tmem79a (ENSOKIG00005018262)	MEF2D (ENSOKIG00005018167)	ENSOKIG00005018124	ENSOKIG00005018084	s100v2 (ENSOKIG00005018051)	prf1.2 (ENSOKIG00005018035) #22	ENSOKIG00005018031	zgc:64022 (ENSOKIG00005018006)	pex11b (ENSOKIG00005017997)	rit1 (ENSOKIG00005017985)	syt11a (ENSOKIG00005017971)	smad10a (ENSOKIG00005017935)	snapin (ENSOKIG00005017912)	chtopa (ENSOKIG00005017907)	ILF2 (ENSOKIG00005017583)	npr1a (ENSOKIG00005016734)	ints3 (ENSOKIG00005016664)	ints3 (ENSOKIG00005016279)	ENSOKIG00005016209	pdia8 (ENSOKIG00005013792)	CCT3 (ENSOKIG00005013472)
Rainbow trout	MODERN SPECIES	24	ENSOMYG00000008624	ENSOMYG00000052299	znf516 (ENSOMYG00000008662)	ENSOMYG00000008696	ENSOMYG00000075050	ENSOMYG00000008771	ENSOMYG00000076517	ENSOMYG00000008814	ENSOMYG00000008838	ENSOMYG00000008940	ENSOMYG00000053048	ENSOMYG00000048142	ENSOMYG00000009093	s100v2 (ENSOMYG00000009173)	s100v2 (ENSOMYG00000060442)	prf1.2 (ENSOMYG00000053711) #22	ENSOMYG00000009228	ENSOMYG00000009297	zgc:64022 (ENSOMYG00000009348)	pex11b (ENSOMYG00000074894)	rit1 (ENSOMYG00000020448)	syt11a (ENSOMYG00000009389)	ENSOMYG00000073624	smad10a (ENSOMYG00000009501)	snapin (ENSOMYG00000009554)	chtopa (ENSOMYG00000009590)	ENSOMYG00000009777	npr1a (ENSOMYG00000011071)	ints3 (ENSOMYG00000016202)	ENSOMYG00000016281	pdia8 (ENSOMYG00000016323)
Salmo	ANCESTRAL SPECIES	2	ENSGT00940000156500.r	ENSGT00950000183051.a.a.a.d	ENSGT00940000161408.c	ENSGT00970000193381.a.a.c.b.a.a.b.a.b	ENSGT01100000263549.j.b	ENSGT01030000234589.g.a.b	ENSGT00950000182966.A.a.b.a.h.c	ENSGT00530000064067.o	ENSGT00390000002390.b.f.b	ENSGT00940000159463.n.b.a	ENSGT00940000157343.a.a.m	ENSGT00390000014542.d	ENSGT00940000154870.A.b.d	ENSGT00940000161854.b.c.a	ENSGT00940000161854.b.c.b	ENSGT00530000063725.o.rb #22	ENSGT00940000176166	ENSGT00940000156361.A.a	ENSGT00940000164158.A.b.c	ENSGT00390000014273.b.k	ENSGT00940000160132.o	ENSGT00940000159088.b.f	ENSGT00940000164585.c.a.a.b.c	ENSGT00390000008274.b	ENSGT00390000002869.vb.b	ENSGT00940000154879.d.b	ENSGT00940000156985.h.a	ENSGT00390000014184.m	ENSGT00940000155336.g.b.d	ENSGT00940000164105.b.a.a	ENSGT00940000166438.c
River trout	MODERN SPECIES	29	ENSSTUG00000033341	ENSSTUG00000033348	cndp2 (ENSSTUG00000033363)	tshz1 (ENSSTUG00000033470)	znf516 (ENSSTUG00000014422)	ENSSTUG00000014427	ENSSTUG00000014428	ENSSTUG00000014435	msto1 (ENSSTUG00000014437)	ENSSTUG00000014443	mef2d (ENSSTUG00000014448)	ENSSTUG00000014490	mrpl24 (ENSSTUG00000014506)	ENSSTUG00000014512	s100v2 (ENSSTUG00000014591)	prf1.2 (ENSSTUG00000014616) #22	ENSSTUG00000014627	zgc:64022 (ENSSTUG00000014670)	pex11b (ENSSTUG00000014688)	rit1 (ENSSTUG00000014702)	smad10a (ENSSTUG00000014722)	snapin (ENSSTUG00000014831)	chtopa (ENSSTUG00000014840)	ilf2 (ENSSTUG00000014876)	npr1a (ENSSTUG00000015189)	ints3 (ENSSTUG00000019007)	TYR (ENSSTUG00000019139)	ENSSTUG00000019166	ENSSTUG00000019187	pdia8 (ENSSTUG00000019211)	cct3 (ENSSTUG00000019592)
Atlantic salmon	MODERN SPECIES	5	cndp2 (ENSSSAG00000004830)	ENSSSAG00000004779	znf516 (ENSSSAG00000004752)	ENSSSAG00000101162	ENSSSAG00000004730	ENSSSAG00000099657	ENSSSAG00000004697	ENSSSAG00000102280	ENSSSAG00000112881	ENSSSAG00000004604	ENSSSAG00000004545	ENSSSAG00000004534	ENSSSAG00000004476	s100v2 (ENSSSAG00000110695)	S10AD (ENSSSAG00000004421)	prf1.2 (ENSSSAG00000109876) #22	ENSSSAG00000004380	RSLBB (ENSSSAG00000004349)	rit1 (ENSSSAG00000093139)	syt11a (ENSSSAG00000071757)	ENSSSAG00000109124	smad10a (ENSSSAG00000071749)	snapin (ENSSSAG00000071746)	chtopa (ENSSSAG00000109532)	ENSSSAG00000071557	npr1a (ENSSSAG00000071305)	ints3 (ENSSSAG00000070898)	ENSSSAG00000070852	ENSSSAG00000070807	pdia8 (ENSSSAG00000043026)	ENSSSAG00000069723
Huchen	MODERN SPECIES	92	ENSHHUG00000045690	cndp2 (ENSHHUG00000045701)	tshz1 (ENSHHUG00000046058)	znf516 (ENSHHUG00000046060)	ENSHHUG00000046069	ENSHHUG00000046080	ENSHHUG00000046085	msto1 (ENSHHUG00000046094)	tmem79a (ENSHHUG00000046105)	mef2d (ENSHHUG00000046107)	BCAN (ENSHHUG00000046132)	mrpl24 (ENSHHUG00000046140)	ENSHHUG00000046146	s100v2 (ENSHHUG00000046157)	ENSHHUG00000046167	prf1.2 (ENSHHUG00000046169) #22	ENSHHUG00000046171	zgc:64022 (ENSHHUG00000046184)	pex11b (ENSHHUG00000046193)	rit1 (ENSHHUG00000046202)	syt11a (ENSHHUG00000046210)	smad10a (ENSHHUG00000046218)	snapin (ENSHHUG00000046237)	chtopa (ENSHHUG00000046247)	ilf2 (ENSHHUG00000046250)	ENSHHUG00000046553	ints3 (ENSHHUG00000046669)
Spotted gar	DUPLICATION
Spotted gar	DUPLICATION
Spotted gar	MODERN SPECIES	663	ENSLOCG00000006010	ENSLOCG00000006025	ENSLOCG00000006040	ENSLOCG00000006056	ENSLOCG00000006103	ENSLOCG00000006116	ENSLOCG00000006136	ENSLOCG00000017676	ENSLOCG00000006155	ENSLOCG00000006172	ENSLOCG00000017677	ENSLOCG00000006188	ENSLOCG00000006203	ENSLOCG00000006220	ENSLOCG00000006232	ENSLOCG00000006250 #22	ENSLOCG00000006268	khdc4 (ENSLOCG00000006286)	ENTREP3 (ENSLOCG00000006299)	ENSLOCG00000006319	ENSLOCG00000006338	ITGA10 (ENSLOCG00000006355)	dap3 (ENSLOCG00000006373)	ENSLOCG00000006385	polr3c (ENSLOCG00000006400)	crabp2b (ENSLOCG00000006421)	ca14 (ENSLOCG00000006442)	ENSLOCG00000006450	ENSLOCG00000006471	celf3a (ENSLOCG00000006518)	cers2a (ENSLOCG00000006535)
Spotted gar	MODERN SPECIES	663	ENSLOCG00000006220	ENSLOCG00000006203	ENSLOCG00000006188	ENSLOCG00000017677	ENSLOCG00000006172	ENSLOCG00000006155	ENSLOCG00000017676	ENSLOCG00000006136	ENSLOCG00000006116	ENSLOCG00000006103	ENSLOCG00000006056	ENSLOCG00000006040	ENSLOCG00000006025	ENSLOCG00000006010	ENSLOCG00000005986	ENSLOCG00000005979 #22	ENSLOCG00000005964	ENSLOCG00000005934	ENSLOCG00000005896	ENSLOCG00000005863	ENSLOCG00000005851	dcst2 (ENSLOCG00000005838)	s100v2 (ENSLOCG00000005826)	ENSLOCG00000005806	si:dkey-211g8.1 (ENSLOCG00000017675)	ENSLOCG00000005776	ENSLOCG00000005756	PHLDB3 (ENSLOCG00000005741)	ethe1 (ENSLOCG00000005717)	ENSLOCG00000005698	drd2l (ENSLOCG00000005675)
Spotted gar	MODERN SPECIES	658	arrb2a (ENSLOCG00000013132)	med11 (ENSLOCG00000013149)	ENSLOCG00000013152	ENSLOCG00000013158	si:ch73-335l21.4 (ENSLOCG00000013165)	ENSLOCG00000013169	ENSLOCG00000013181	ENSLOCG00000013187	ENSLOCG00000013194	ENSLOCG00000013201	ENSLOCG00000013204	ENSLOCG00000013214	zgc:172339 (ENSLOCG00000013215)	ENSLOCG00000013219	ENSLOCG00000013221	ENSLOCG00000013225 #22	ENSLOCG00000013229	ENSLOCG00000013234	ponzr6 (ENSLOCG00000013237)	fxr2 (ENSLOCG00000013240)	ENSLOCG00000013246	ENSLOCG00000013250	ENSLOCG00000013253	ENSLOCG00000013258	ENSLOCG00000013260	ENSLOCG00000013263	ENSLOCG00000013266	ENSLOCG00000013268	slx1b (ENSLOCG00000013274)	zgc:112271 (ENSLOCG00000013282)	ENSLOCG00000013285
Reedfish	DUPLICATION
Reedfish	DUPLICATION
Reedfish	MODERN SPECIES	3	ENSECRG00000011759	ENSECRG00000011776	ENSECRG00000011792	ENSECRG00000011801	ENSECRG00000011814	BCL7C (ENSECRG00000011831)	CTF1 (ENSECRG00000011844)	ENSECRG00000011857	ENSECRG00000011865	ENSECRG00000011874	ENSECRG00000011883 #22	ENSECRG00000011897	ENSECRG00000011911	znf668 (ENSECRG00000011922)	PRF1 (ENSECRG00000011931) #22	ENSECRG00000012046 #22	ENSECRG00000012258	ENSECRG00000012290	ENSECRG00000012306	ENSECRG00000012318	ENSECRG00000012331	ENSECRG00000012347	ENSECRG00000012361	ENSECRG00000012375	ENSECRG00000012384	ENSECRG00000012407	ENSECRG00000012432	ENSECRG00000012443	ENSECRG00000012449	ENSECRG00000012464	ENSECRG00000012471
Reedfish	MODERN SPECIES	57																ENSECRG00000018703 #22	ENSECRG00000018837 #22	stx4 (ENSECRG00000020350)	stx1b (ENSECRG00000020367)	ENSECRG00000020389	ENSECRG00000020413	ENSECRG00000020428	ENSECRG00000020436	ENSECRG00000020442
Reedfish	DUPLICATION
Reedfish	MODERN SPECIES	57															ENSECRG00000018703 #22	ENSECRG00000018837 #22	stx4 (ENSECRG00000020350)	stx1b (ENSECRG00000020367)	ENSECRG00000020389	ENSECRG00000020413	ENSECRG00000020428	ENSECRG00000020436	ENSECRG00000020442
Reedfish	MODERN SPECIES	3	RNF40 (ENSECRG00000011680)	ENSECRG00000011713	ENSECRG00000011722	ENSECRG00000011733	ENSECRG00000011745	ENSECRG00000011759	ENSECRG00000011776	ENSECRG00000011792	ENSECRG00000011801	ENSECRG00000011814	BCL7C (ENSECRG00000011831)	CTF1 (ENSECRG00000011844)	ENSECRG00000011857	ENSECRG00000011865	ENSECRG00000011874	ENSECRG00000011883 #22	ENSECRG00000011897	ENSECRG00000011911	znf668 (ENSECRG00000011922)	PRF1 (ENSECRG00000011931) #22	ENSECRG00000012046 #22	ENSECRG00000012258	ENSECRG00000012290	ENSECRG00000012306	ENSECRG00000012318	ENSECRG00000012331	ENSECRG00000012347	ENSECRG00000012361	ENSECRG00000012375	ENSECRG00000012384	ENSECRG00000012407
Reedfish	MODERN SPECIES	3	ENSECRG00000011745	ENSECRG00000011759	ENSECRG00000011776	ENSECRG00000011792	ENSECRG00000011801	ENSECRG00000011814	BCL7C (ENSECRG00000011831)	CTF1 (ENSECRG00000011844)	ENSECRG00000011857	ENSECRG00000011865	ENSECRG00000011874	ENSECRG00000011883 #22	ENSECRG00000011897	ENSECRG00000011911	znf668 (ENSECRG00000011922)	PRF1 (ENSECRG00000011931) #22	ENSECRG00000012046 #22	ENSECRG00000012258	ENSECRG00000012290	ENSECRG00000012306	ENSECRG00000012318	ENSECRG00000012331	ENSECRG00000012347	ENSECRG00000012361	ENSECRG00000012375	ENSECRG00000012384	ENSECRG00000012407	ENSECRG00000012432	ENSECRG00000012443	ENSECRG00000012449	ENSECRG00000012464
Actinopterygii	ANCESTRAL SPECIES																	ENSGT00530000063725.p #22
Neopterygii	ANCESTRAL SPECIES																	ENSGT00530000063725.p #22
Spotted gar	DUPLICATION
Spotted gar	DUPLICATION
Spotted gar	MODERN SPECIES	60																ENSLOCG00000000434 #22
Spotted gar	MODERN SPECIES	65																PRF1 (ENSLOCG00000000092) #22
Spotted gar	MODERN SPECIES	675	gfus.1 (ENSLOCG00000008481)	bmb (ENSLOCG00000008496)	pycr3 (ENSLOCG00000008510)	EEF1D (ENSLOCG00000008527)	ENSLOCG00000008541	ENSLOCG00000008578	RHPN1 (ENSLOCG00000008592)	mafaa (ENSLOCG00000018124)	ZC3H3 (ENSLOCG00000008621)	ENSLOCG00000008631	ENSLOCG00000008642	ENSLOCG00000008656	ENSLOCG00000008668	aoc1 (ENSLOCG00000008713)	kcnh2a (ENSLOCG00000008725)	ENSLOCG00000008738 #22	ENSLOCG00000008746	ENSLOCG00000008758	ENSLOCG00000008765	ENSLOCG00000008775	ENSLOCG00000008785	ENSLOCG00000008809	ENSLOCG00000008819	maf1b (ENSLOCG00000008827)	oplah (ENSLOCG00000008846)	exosc4 (ENSLOCG00000008878)	GPAA1 (ENSLOCG00000008890)	shrprbck1r (ENSLOCG00000008910)	foxh1 (ENSLOCG00000008937)	ENSLOCG00000008947	PPP1R16A (ENSLOCG00000008960)
Osteoglossocephalai	ANCESTRAL SPECIES	1203																ENSGT00530000063725.p #22	ENSGT01030000234627.a.a.d.b
Clupeocephala	ANCESTRAL SPECIES																	ENSGT00530000063725.p #22
Euteleosteomorpha	ANCESTRAL SPECIES	114					ENSGT00940000155412.a.a.b	ENSGT00940000154535.B	ENSGT00950000183249	ENSGT00940000162394	ENSGT00940000159148.b	ENSGT00940000154615.i.a.b	ENSGT00950000183047.c.a.b	ENSGT00940000154130.a.a.a	ENSGT00940000159125	ENSGT00390000001945	ENSGT00640000091578	ENSGT00530000063725.p #22	ENSGT00940000160446	ENSGT00940000163377.a.b.a	ENSGT00950000182969.C	ENSGT00950000182975.a.b.a.b	ENSGT01100000263529.a.a.a.a.a.a.b	ENSGT01050000244941.B.c.b.a	ENSGT00940000162790.a.u.a	ENSGT00530000063777.a.a.a	ENSGT00940000160542	ENSGT00940000165175.a	ENSGT00940000158445.e	ENSGT00940000155764.A.b.a.b	ENSGT00940000164566.a	ENSGT00950000182886.a.a.b.s	ENSGT00390000018759
Protacanthopterygii	ANCESTRAL SPECIES	127	ENSGT00940000162790.a.u.a	ENSGT01050000244941.B.c.b.a	ENSGT01100000263529.a.a.a.a.a.a.b	ENSGT00950000182975.a.b.a.b	ENSGT00950000182969.C	ENSGT00940000163377.a.b.a	ENSGT00940000160446	ENSGT01000000214708.a.b	ENSGT00940000159148.b	ENSGT00940000154615.i.a.b	ENSGT00950000183047.c.a.b	ENSGT00940000154130.a.a.a	ENSGT00940000159125	ENSGT00390000001945	ENSGT00640000091578	ENSGT00530000063725.p #22	ENSGT01070000253744.a.a.a.b.a.a ##29	ENSGT00950000183060.a.a.d.a	ENSGT00940000163679
Salmoninae	DUPLICATION
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	567								ENSGT00940000154535.B.a.b	ENSGT00940000159148.b	ENSGT00940000154615.i.a.b.g	ENSGT00950000183047.c.a.b	ENSGT00940000154130.a.a.a	ENSGT00940000159125	ENSGT00390000001945	ENSGT00640000091578	ENSGT00530000063725.p.c.a #22	ENSGT00940000158717.m.a	ENSGT00950000183060.a.a.d.a.d	ENSGT00940000163679	ENSGT00390000001316	ENSGT00940000161391.b	ENSGT00940000164305.c.a	ENSGT00940000160222.b	ENSGT00940000161420.g.a
Salmoninae_a	DUPLICATION
Salmoninae_a	ANCESTRAL SPECIES	33	ENSGT00530000063777.a.a.a.k.a	ENSGT01100000263541.a.a.a.b.b.b.a.a.b	ENSGT01050000244941.B.c.b.a.h	ENSGT00940000162790.a.u.a.c	ENSGT00530000063777.a.a.a.l	ENSGT00940000160542	ENSGT00940000165175.a.b.a	ENSGT01000000214708.a.b	ENSGT00940000159148.b	ENSGT00940000154615.i.a.b.g	ENSGT00950000183047.c.a.b	ENSGT00940000154130.a.a.a	ENSGT00940000159125	ENSGT00390000001945.uc	ENSGT00640000091578.d	ENSGT00530000063725.p.c.a.a #22	ENSGT00960000186686.a	ENSGT01070000253744.a.a.a.b.a.a ##29	ENSGT00940000158717.n.d	ENSGT00950000183060.a.a.c	ENSGT00940000158717.m.a	ENSGT00950000183060.a.a.d.a.d	ENSGT00940000163679	ENSGT00940000162179.e.b.a.b.g.a.a.b.a.a.a	ENSGT00940000162179.e.b.a.b.g.a.a.b.a.a.b	ENSGT00390000001316	ENSGT00940000161391.b	ENSGT01100000263520.a.b.a.a.a.a.a.b	ENSGT01100000263520.a.b.b.a.a.b	ENSGT00940000164305.d	ENSGT00940000160222.b
Oncorhynchus	ANCESTRAL SPECIES																	ENSGT00530000063725.p.c.a.a #22
Oncorhynchus_a	ANCESTRAL SPECIES																	ENSGT00530000063725.p.c.a.a #22
Coho salmon	DUPLICATION
Coho salmon	DUPLICATION
Coho salmon	MODERN SPECIES	30	ENSOKIG00005035580	ENSOKIG00005035584	ENSOKIG00005035596	ENSOKIG00005035622	ENSOKIG00005035634	ENSOKIG00005035637	ENSOKIG00005035650	MFAP4 (ENSOKIG00005035656)	TRIP10 (ENSOKIG00005035680)	ENSOKIG00005035736	ENSOKIG00005035774	ENSOKIG00005035793	UBL5 (ENSOKIG00005035801)	PIN1 (ENSOKIG00005035836)	ENSOKIG00005035849	ENSOKIG00005035859 #22	ENSOKIG00005035872 ##29	ENSOKIG00005035951	ENSOKIG00005036969	ENSOKIG00005036986	ENSOKIG00005037029	ENSOKIG00005037059	ENSOKIG00005037082	ENSOKIG00005037108	ENSOKIG00005037117	ENSOKIG00005037123	ENSOKIG00005037140	ENSOKIG00005037155	ENSOKIG00005037170	ENSOKIG00005037178	ENSOKIG00005037187
Coho salmon	MODERN SPECIES	266																ENSOKIG00005042035 #22
Coho salmon	MODERN SPECIES	353												VAV1 (ENSOKIG00005036726)	ENSOKIG00005036814	pin1 (ENSOKIG00005036838)	ENSOKIG00005036852	ENSOKIG00005036860 #22
Salmo	ANCESTRAL SPECIES	204			ENSGT00940000163461.a.a.a.b.c.b.b.b.a.b.a.a.b.b.a.b.a	ENSGT00940000162179.e.b.a.b.g.a.a.a.b.a	ENSGT00940000162179.e.b.a.b.g.a.a.a.a.a	ENSGT00940000156207.a.a.b.a.a.a.b.a.a.b.a	ENSGT00940000155412.a.a.b.e.a.a	ENSGT00940000154535.B.a.a	ENSGT00940000159148.b	ENSGT00940000154615.i.a.b.g	ENSGT00950000183047.c.a.b	ENSGT00940000154130.a.a.a	ENSGT00940000159125	ENSGT00390000001945.tc.a	ENSGT00640000091578.c.b	ENSGT00530000063725.p.c.a.a #22
Atlantic salmon	MODERN SPECIES	3	ENSSSAG00000092457	ENSSSAG00000093463	ENSSSAG00000103264	ENSSSAG00000098115	rdh8b (ENSSSAG00000089149)	ENSSSAG00000010463	ENSSSAG00000086944	olfm2b (ENSSSAG00000083473)	ENSSSAG00000102701	ENSSSAG00000083855	TRIP10 (ENSSSAG00000059860)	ENSSSAG00000118490	VAV1 (ENSSSAG00000116279)	ubl5 (ENSSSAG00000005791)	ENSSSAG00000093239	ENSSSAG00000121868 #22	ENSSSAG00000086285	ENSSSAG00000012023	ENSSSAG00000088546 ##29	ENSSSAG00000113767	ENSSSAG00000058964	ENSSSAG00000121922	ENSSSAG00000121953	ENSSSAG00000105367	ENSSSAG00000106634	ENSSSAG00000000283	ENSSSAG00000099796	ENSSSAG00000083578	ENSSSAG00000112137	ENSSSAG00000002980	ENSSSAG00000087684
Salmoninae_a	ANCESTRAL SPECIES	394														ENSGT00390000001945.tc.b	ENSGT00640000091578.c.a	ENSGT00530000063725.p.c.a.b #22
Salmo	ANCESTRAL SPECIES	407														ENSGT00390000001945.tc.b	ENSGT00640000091578.c.a	ENSGT00530000063725.p.c.a.b #22
River trout	DUPLICATION
River trout	MODERN SPECIES	31	ENSSTUG00000044259	ENSSTUG00000044261	ENSSTUG00000044295	ENSSTUG00000019958	ENSSTUG00000019968	ENSSTUG00000019977	rdh8b (ENSSTUG00000019986)	OLFM2 (ENSSTUG00000020056)	ENSSTUG00000020072	TRIP10 (ENSSTUG00000020077)	ENSSTUG00000020087	VAV1 (ENSSTUG00000020163)	UBL5 (ENSSTUG00000020430)	pin1 (ENSSTUG00000020442)	ENSSTUG00000020460 #22	ENSSTUG00000020468 #22	ENSSTUG00000020479 ##29	TTYH3 (ENSSTUG00000020485)	ENSSTUG00000020491	ENSSTUG00000020499	ENSSTUG00000020525	ENSSTUG00000020533	mad1l1 (ENSSTUG00000020539)	foxk1 (ENSSTUG00000020555)	cyp3a65 (ENSSTUG00000020583)	cyp3a65 (ENSSTUG00000021362)	ENSSTUG00000021608	ENSSTUG00000021625	ENSSTUG00000021642	ENSSTUG00000021652	ENSSTUG00000021661
River trout	MODERN SPECIES	31	ENSSTUG00000044250	ENSSTUG00000044259	ENSSTUG00000044261	ENSSTUG00000044295	ENSSTUG00000019958	ENSSTUG00000019968	ENSSTUG00000019977	rdh8b (ENSSTUG00000019986)	OLFM2 (ENSSTUG00000020056)	ENSSTUG00000020072	TRIP10 (ENSSTUG00000020077)	ENSSTUG00000020087	VAV1 (ENSSTUG00000020163)	UBL5 (ENSSTUG00000020430)	pin1 (ENSSTUG00000020442)	ENSSTUG00000020460 #22	ENSSTUG00000020468 #22	ENSSTUG00000020479 ##29	TTYH3 (ENSSTUG00000020485)	ENSSTUG00000020491	ENSSTUG00000020499	ENSSTUG00000020525	ENSSTUG00000020533	mad1l1 (ENSSTUG00000020539)	foxk1 (ENSSTUG00000020555)	cyp3a65 (ENSSTUG00000020583)	cyp3a65 (ENSSTUG00000021362)	ENSSTUG00000021608	ENSSTUG00000021625	ENSSTUG00000021642	ENSSTUG00000021652
Atlantic salmon	DUPLICATION
Atlantic salmon	MODERN SPECIES	11	ENSSSAG00000106182	ENSSSAG00000100851	ENSSSAG00000001054	ENSSSAG00000092221	ENSSSAG00000114424	ENSSSAG00000002833	rdh8b (ENSSSAG00000093354)	ENSSSAG00000109928	olfm2b (ENSSSAG00000102018)	ENSSSAG00000003582	TRIP10 (ENSSSAG00000005707)	ENSSSAG00000111333	VAV1 (ENSSSAG00000084818)	ENSSSAG00000100875	ENSSSAG00000110912 #22	ENSSSAG00000000280 #22	ENSSSAG00000102988	ENSSSAG00000103057	ENSSSAG00000005720	ENSSSAG00000096083	ENSSSAG00000103390	ENSSSAG00000116003	ENSSSAG00000000290	ENSSSAG00000094633	ENSSSAG00000094984	ENSSSAG00000000802	ENSSSAG00000114999	ENSSSAG00000082547	ENSSSAG00000111401	ENSSSAG00000100166	ENSSSAG00000002883
Atlantic salmon	MODERN SPECIES	11	ENSSSAG00000117753	ENSSSAG00000106182	ENSSSAG00000100851	ENSSSAG00000001054	ENSSSAG00000092221	ENSSSAG00000114424	ENSSSAG00000002833	rdh8b (ENSSSAG00000093354)	ENSSSAG00000109928	olfm2b (ENSSSAG00000102018)	ENSSSAG00000003582	TRIP10 (ENSSSAG00000005707)	ENSSSAG00000111333	VAV1 (ENSSSAG00000084818)	ENSSSAG00000100875	ENSSSAG00000110912 #22	ENSSSAG00000000280 #22	ENSSSAG00000102988	ENSSSAG00000103057	ENSSSAG00000005720	ENSSSAG00000096083	ENSSSAG00000103390	ENSSSAG00000116003	ENSSSAG00000000290	ENSSSAG00000094633	ENSSSAG00000094984	ENSSSAG00000000802	ENSSSAG00000114999	ENSSSAG00000082547	ENSSSAG00000111401	ENSSSAG00000100166
Huchen	DUPLICATION
Huchen	MODERN SPECIES	5498																ENSHHUG00000007885 #22
Huchen	MODERN SPECIES	3541												ENSHHUG00000036291	ENSHHUG00000036284	ENSHHUG00000036274	ENSHHUG00000036263 #22	ENSHHUG00000036252 #22
Salmoninae	ANCESTRAL SPECIES																	ENSGT00530000063725.p.c.b #22
Huchen	MODERN SPECIES	3541													ENSHHUG00000036291	ENSHHUG00000036284	ENSHHUG00000036274	ENSHHUG00000036263 #22	ENSHHUG00000036252 #22
Salmoninae	ANCESTRAL SPECIES	305	ENSGT00530000063631.b.n.b.b	ENSGT00950000183211.a.a.a.gb	ENSGT00940000158950.n	ENSGT01090000260003.a.b.b.a.a.b.b.a.k.f	ENSGT00390000002407.c.i.b	ENSGT00950000183056.B.a.h.b	ENSGT00520000055567.a.a.a.q.b	ENSGT00390000005318.b.a.g	ENSGT00940000153311.a.a.b.c	ENSGT00940000164997.c	ENSGT00520000055634.b.a.c	ENSGT01100000263518.A.a.a.a.d	ENSGT01100000263723	ENSGT01080000257410.C.e	ENSGT00940000164374.A.k.b	ENSGT00530000063725.p.d #22	ENSGT00940000160139.j	ENSGT00530000063835.a.f	ENSGT00940000158738.c	ENSGT00940000157198.y	ENSGT00940000164771.a.e	ENSGT00390000015634.j	ENSGT00940000153739.a.a.g	ENSGT00940000177261	ENSGT00950000183032.A.b.b.b.a.a.a.b	ENSGT00940000156364.a.a.d	ENSGT00940000157472.e.a.a
Huchen	MODERN SPECIES	4434																ENSHHUG00000045032 #22
Salmoninae_a	ANCESTRAL SPECIES	26	ENSGT00530000063631.b.n.b.b	ENSGT00950000183211.a.a.a.gb	ENSGT00940000158950.n	ENSGT01090000260003.a.b.b.a.a.b.b.a.k.f	ENSGT00390000002407.c.i.b	ENSGT00950000183056.B.a.h.b	ENSGT00520000055567.a.a.a.q.b	ENSGT00390000005318.b.a.g	ENSGT00940000153311.a.a.b.c	ENSGT00940000164997.c	ENSGT00520000055634.b.a.c	ENSGT01100000263518.A.a.a.a.d	ENSGT01100000263723	ENSGT01080000257410.C.e	ENSGT00940000164374.A.k.b	ENSGT00530000063725.p.d #22	ENSGT00940000160139.j	ENSGT00530000063835.a.f	ENSGT00940000158738.c	ENSGT00940000157198.y	ENSGT00940000164771.a.e	ENSGT00390000015634.j	ENSGT00940000153739.a.a.g	ENSGT00940000177261	ENSGT00950000183032.A.b.b.b.a.a.a.b	ENSGT00940000156364.a.a.d	ENSGT00940000157472.e.a.a	ENSGT00940000167283.a.d	ENSGT00510000046985.o.d	ENSGT00510000046985.o.c.a.b	ENSGT00390000004928.y
Oncorhynchus	ANCESTRAL SPECIES	7	ENSGT00940000153481.B.f.b	ENSGT00530000063631.b.n.b.b	ENSGT00950000183211.a.a.a.gb	ENSGT00940000158950.n	ENSGT01090000260003.a.b.b.a.a.b.b.a.k.f	ENSGT00390000002407.c.i.b	ENSGT00950000183056.B.a.h.b	ENSGT00520000055567.a.a.a.q.b	ENSGT00390000005318.b.a.g	ENSGT00940000153311.a.a.b.c	ENSGT00940000164997.c	ENSGT00520000055634.b.a.c	ENSGT01100000263518.A.a.a.a.d	ENSGT01080000257410.C.e	ENSGT00940000164374.A.k.b	ENSGT00530000063725.p.d #22	ENSGT00940000160139.j	ENSGT00530000063835.a.f	ENSGT00940000158738.c	ENSGT00940000157198.y	ENSGT00940000164771.a.e	ENSGT00390000015634.j	ENSGT00940000153739.a.a.g	ENSGT00940000177261	ENSGT00950000183032.A.b.b.b.a.a.a.b	ENSGT00940000156364.a.a.d	ENSGT00940000157472.e.a.a	ENSGT00940000167283.a.d	ENSGT00510000046985.o.c.a.b	ENSGT00390000004928.y	ENSGT00940000159012.g
Rainbow trout	MODERN SPECIES	7	bcl2l1 (ENSOMYG00000043310)	cox4i2 (ENSOMYG00000043318)	ENSOMYG00000043321	ENSOMYG00000069488	nsfl1c (ENSOMYG00000043332)	ENSOMYG00000005460	fkbp1ab (ENSOMYG00000005519)	sdcbp2 (ENSOMYG00000005692)	SNPH (ENSOMYG00000068941)	NTSR1 (ENSOMYG00000005938)	ENSOMYG00000054782	ENSOMYG00000065730	SLCO4A1 (ENSOMYG00000074202)	ENSOMYG00000065454	ENSOMYG00000009580	ENSOMYG00000009603 #22	ENSOMYG00000075239	gata5 (ENSOMYG00000006035)	ENSOMYG00000058884	HCK (ENSOMYG00000007383)	tm9sf4 (ENSOMYG00000008847)	plagl2 (ENSOMYG00000074223)	ENSOMYG00000059636	kif3b (ENSOMYG00000008913)	ENSOMYG00000008932	ENSOMYG00000061175	ENSOMYG00000009024	ENSOMYG00000057674	ENSOMYG00000009418	ENSOMYG00000009311	ENSOMYG00000009326
Oncorhynchus_a	ANCESTRAL SPECIES	9	ENSGT00940000153481.B.f.b	ENSGT00530000063631.b.n.b.b	ENSGT00950000183211.a.a.a.gb	ENSGT00940000158950.n	ENSGT01090000260003.a.b.b.a.a.b.b.a.k.f	ENSGT00390000002407.c.i.b	ENSGT00950000183056.B.a.h.b	ENSGT00520000055567.a.a.a.q.b	ENSGT00390000005318.b.a.g	ENSGT00940000153311.a.a.b.c	ENSGT00940000164997.c	ENSGT00520000055634.b.a.c	ENSGT01100000263518.A.a.a.a.d	ENSGT01080000257410.C.e	ENSGT00940000164374.A.k.b	ENSGT00530000063725.p.d #22	ENSGT00940000160139.j	ENSGT00940000158738.c	ENSGT00940000157198.y	ENSGT00940000164771.a.e	ENSGT00390000015634.j	ENSGT00940000153739.a.a.g	ENSGT00950000183032.A.b.b.b.a.a.a.b	ENSGT00940000156364.a.a.d	ENSGT00940000157472.e.a.a	ENSGT00940000167283.a.d	ENSGT00510000046985.o.c.a.b	ENSGT00390000004928.y	ENSGT00940000159012.g	ENSGT01000000221579	ENSGT00940000156669.a
Chinook salmon	DUPLICATION
Chinook salmon	MODERN SPECIES	476															ENSOTSG00005041991	ENSOTSG00005041989 #22	psen2 (ENSOTSG00005041987)	dpy30 (ENSOTSG00005041986)	ENSOTSG00005041984	spast (ENSOTSG00005040118)	ENSOTSG00005040111
Chinook salmon	MODERN SPECIES	14	dpm1 (ENSOTSG00005016955)	adnpb (ENSOTSG00005016960)	pard6b (ENSOTSG00005016962)	ARFGEF2 (ENSOTSG00005016970)	bcl2l1 (ENSOTSG00005017010)	cox4i2 (ENSOTSG00005017011)	FAM110A (ENSOTSG00005017013)	nsfl1c (ENSOTSG00005017014)	ENSOTSG00005017016	fkbp1ab (ENSOTSG00005017020)	sdcbp2 (ENSOTSG00005017029)	SNPH (ENSOTSG00005017031)	NTSR1 (ENSOTSG00005002847)	SLCO4A1 (ENSOTSG00005003255)	ENSOTSG00005003257	ENSOTSG00005003259 #22	gata5 (ENSOTSG00005003264)	HCK (ENSOTSG00005003314)	tm9sf4 (ENSOTSG00005007014)	plagl2 (ENSOTSG00005007294)	pofut1 (ENSOTSG00005007295)	ENSOTSG00005007298	ENSOTSG00005007300	ENSOTSG00005007302	TBC1D22B (ENSOTSG00005007307)	ENSOTSG00005007865	snrpg (ENSOTSG00005007866)	plpbp (ENSOTSG00005007868)	tmed4 (ENSOTSG00005007873)	ENSOTSG00005007875	ENSOTSG00005007876
Coho salmon	MODERN SPECIES	16	ARFGEF2 (ENSOKIG00005034338)	bcl2l1 (ENSOKIG00005036953)	ENSOKIG00005036966	cox4i2 (ENSOKIG00005036989)	ENSOKIG00005037027	nsfl1c (ENSOKIG00005037040)	ENSOKIG00005037070	fkbp1ab (ENSOKIG00005037137)	sdcbp2 (ENSOKIG00005037115)	SNPH (ENSOKIG00005037125)	NTSR1 (ENSOKIG00005037138)	ENSOKIG00005037144	ENSOKIG00005037157	ENSOKIG00005037164	ENSOKIG00005037244	ENSOKIG00005037270 #22	ENSOKIG00005037304	gata5 (ENSOKIG00005037314)	HCK (ENSOKIG00005037504)	tm9sf4 (ENSOKIG00005040214)	plagl2 (ENSOKIG00005040789)	ENSOKIG00005040811	pofut1 (ENSOKIG00005040830)	kif3b (ENSOKIG00005040991)	ENSOKIG00005041021	ENSOKIG00005041035	PCMTD2 (ENSOKIG00005041047)	MYT1 (ENSOKIG00005041103)	ENSOKIG00005041646	TBC1D22B (ENSOKIG00005041670)	ENSOKIG00005042098
Salmo	ANCESTRAL SPECIES	4	ENSGT00530000063631.b.n.b.b	ENSGT00950000183211.a.a.a.gb	ENSGT00940000158950.n	ENSGT01090000260003.a.b.b.a.a.b.b.a.k.f	ENSGT00390000002407.c.i.b	ENSGT00950000183056.B.a.h.b	ENSGT00520000055567.a.a.a.q.a.a	ENSGT00390000005318.b.a.g	ENSGT00940000153311.a.a.b.c	ENSGT00940000164997.c	ENSGT00520000055634.b.a.c	ENSGT01100000263518.A.a.a.a.d	ENSGT01100000263723	ENSGT01080000257410.C.e	ENSGT00940000164374.A.k.b	ENSGT00530000063725.p.d #22	ENSGT00940000160139.j	ENSGT00530000063835.a.f	ENSGT00940000158738.c	ENSGT00940000157198.y	ENSGT00940000164771.a.e	ENSGT00390000015634.j	ENSGT00940000153739.a.a.g	ENSGT00940000177261	ENSGT00950000183032.A.b.b.b.a.a.a.b	ENSGT00940000156364.a.a.d	ENSGT00940000157472.e.a.a	ENSGT00940000167283.a.d	ENSGT00510000046985.o.d	ENSGT00390000004928.y	ENSGT00940000159012.g
River trout	MODERN SPECIES	23	ARFGEF2 (ENSSTUG00000031384)	bcl2l1 (ENSSTUG00000034465)	cox4i2 (ENSSTUG00000034482)	ENSSTUG00000034520	ENSSTUG00000034526	nsfl1c (ENSSTUG00000034537)	ENSSTUG00000034563	nsfl1c (ENSSTUG00000034634)	fkbp1ab (ENSSTUG00000034658)	sdcbp2 (ENSSTUG00000034670)	SNPH (ENSSTUG00000034692)	NTSR1 (ENSSTUG00000034718)	SLCO4A1 (ENSSTUG00000034780)	ENSSTUG00000034916	ENSSTUG00000034921	ENSSTUG00000034929 #22	gata5 (ENSSTUG00000034946)	ENSSTUG00000034958	HCK (ENSSTUG00000035017)	tm9sf4 (ENSSTUG00000037093)	plagl2 (ENSSTUG00000037199)	ENSSTUG00000037212	kif3b (ENSSTUG00000037248)	ENSSTUG00000037277	ENSSTUG00000037283	ENSSTUG00000037288	TBC1D22B (ENSSTUG00000037300)	ENSSTUG00000037624	snrpg (ENSSTUG00000037628)	plpbp (ENSSTUG00000037644)	tmed4 (ENSSTUG00000037680)
Atlantic salmon	MODERN SPECIES	4	ENSSSAG00000063889	ENSSSAG00000084727	cox4i2 (ENSSSAG00000063792)	ENSSSAG00000081919	ENSSSAG00000087171	ENSSSAG00000063773	nsfl1c (ENSSSAG00000106914)	mfsd2 (ENSSSAG00000063720)	fkbp1ab (ENSSSAG00000063706)	sdcbp2 (ENSSSAG00000063667)	SNPH (ENSSSAG00000091280)	NTSR1 (ENSSSAG00000114572)	ENSSSAG00000063642	SLCO4A1 (ENSSSAG00000063615)	ENSSSAG00000063608	ENSSSAG00000063601 #22	ENSSSAG00000063586	gata5 (ENSSSAG00000087389)	ENSSSAG00000063568	HCK (ENSSSAG00000053065)	tm9sf4 (ENSSSAG00000050778)	plagl2 (ENSSSAG00000104563)	pofut1 (ENSSSAG00000048714)	kif3b (ENSSSAG00000048639)	ENSSSAG00000113516	ENSSSAG00000046146	ENSSSAG00000090781	ENSSSAG00000046219	ENSSSAG00000099913	snrpg (ENSSSAG00000048092)	plpbp (ENSSSAG00000048122)
Acanthomorphata	ANCESTRAL SPECIES	167							ENSGT00950000182969.B.d	ENSGT00950000182969.B.c.a.a.b.a.a.a.b	ENSGT00950000182969.B.c.a.a.b.a.a.a.a.a.b	ENSGT00950000182969.B.c.a.a.b.a.a.a.a.b	ENSGT00950000182969.B.c.a.a.b.a.a.a.a.a.a.a	ENSGT01090000260030.a.b.b.b	ENSGT01030000235009	ENSGT00940000156395.f	ENSGT00390000015789	ENSGT00530000063725.p #22	ENSGT01030000234627.a.a.d.b	ENSGT00940000164729.b	ENSGT00940000164729.a.a.c	ENSGT00940000153840.a.a.a.b	ENSGT00940000164818.c.b	ENSGT00940000160144	ENSGT00390000006930	ENSGT00940000165670	ENSGT00940000165499.a	ENSGT00940000163935	ENSGT00940000167798	ENSGT00550000074898	ENSGT00940000156314.a	ENSGT00940000160279	ENSGT00390000017328.a.a
Euacanthomorphacea	ANCESTRAL SPECIES	93							ENSGT00950000182969.B.d	ENSGT00950000182969.B.c.a.a.b.a.a.a.b	ENSGT00950000182969.B.c.a.a.b.a.a.a.a.a.b	ENSGT00950000182969.B.c.a.a.b.a.a.a.a.b	ENSGT00950000182969.B.c.a.a.b.a.a.a.a.a.a.a	ENSGT01090000260030.a.b.b.b	ENSGT00390000012244	ENSGT00940000156395.f	ENSGT00390000015789	ENSGT00530000063725.p #22	ENSGT01030000234627.a.a.d.b	ENSGT00940000164729.b	ENSGT00940000164729.a.a.c	ENSGT00940000153840.a.a.a.b	ENSGT00940000164818.c.b	ENSGT00940000160144	ENSGT00390000006930	ENSGT00940000165670	ENSGT00940000165499.a	ENSGT00940000163935	ENSGT00940000167798	ENSGT00550000074898	ENSGT00940000156314.a	ENSGT00940000160279	ENSGT00390000017328.a.a
Percomorphaceae	ANCESTRAL SPECIES	17	ENSGT00950000183157.a.a.b.d	ENSGT00940000163566.a.a	ENSGT00940000157752	ENSGT00390000014423	ENSGT00940000155412.a.a.b	ENSGT00940000154535.B	ENSGT00950000183249	ENSGT00940000162394	ENSGT00940000159148.b	ENSGT00940000154615.i.a.b	ENSGT00950000183047.c.a.b	ENSGT00940000154130.a.a.a	ENSGT00940000159125	ENSGT00390000001945	ENSGT00640000091578	ENSGT00530000063725.p #22	ENSGT01100000263598	ENSGT00950000182960.a.a.b.e.b	ENSGT00390000015109	ENSGT00940000153974.A	ENSGT00400000022459	ENSGT00390000010052.b	ENSGT00390000013127.b	ENSGT00390000009298	ENSGT00930000151032.A.c.a	ENSGT00940000155335.t	ENSGT00940000182552	ENSGT00940000156222.a.b	ENSGT00390000002886.a.a.a	ENSGT00940000165949	ENSGT00940000173775
Percomorphaceae_B	DUPLICATION
Percomorphaceae_B	DUPLICATION
Percomorphaceae_B	ANCESTRAL SPECIES																	ENSGT00530000063725.p.e.a #22
Percomorphaceae_C	ANCESTRAL SPECIES	3	ENSGT00390000014423	ENSGT00940000155412.a.a.b	ENSGT00940000154535.B	ENSGT00950000183249	ENSGT00940000162394	ENSGT00940000159148.b	ENSGT01060000248589.A.d	ENSGT00940000154615.i.a.b	ENSGT00950000183047.c.a.b	ENSGT00940000154130.a.a.a	ENSGT00940000159125	ENSGT00390000001945	ENSGT00640000091578	ENSGT00990000204057	ENSGT00530000063725.p.f #22	ENSGT00530000063725.p.e.a #22	ENSGT00530000063725.p.e.b #22	ENSGT01100000263598	ENSGT00950000182960.a.a.b.e.b	ENSGT00390000015109	ENSGT00940000153974.A	ENSGT00400000022459	ENSGT00390000010052.b	ENSGT00390000013127.b	ENSGT00390000009298	ENSGT00930000151032.A.c.a	ENSGT00940000182552	ENSGT00940000155335.s.a	ENSGT00940000156222.a.b	ENSGT00390000002886.a.a.a	ENSGT00940000165949
Eupercaria	ANCESTRAL SPECIES	2	ENSGT00390000014423	ENSGT00940000155412.a.a.b	ENSGT00940000154535.B	ENSGT00950000183249	ENSGT00940000162394	ENSGT00940000159148.b	ENSGT01060000248589.A.d	ENSGT00940000154615.i.a.b	ENSGT00950000183047.c.a.b	ENSGT00940000154130.a.a.a	ENSGT00940000159125	ENSGT00390000001945	ENSGT00640000091578	ENSGT00990000204057	ENSGT00530000063725.p.f #22	ENSGT00530000063725.p.e.a #22	ENSGT00530000063725.p.e.b #22	ENSGT01100000263598	ENSGT00950000182960.a.a.b.e.b	ENSGT00390000015109	ENSGT00940000153974.A	ENSGT00400000022459	ENSGT00390000010052.b	ENSGT00390000013127.b	ENSGT00390000009298	ENSGT00930000151032.A.c.a	ENSGT00940000155335.s.a	ENSGT00940000156222.a.b	ENSGT00390000002886.a.a.a	ENSGT00940000162658.b	ENSGT00390000002164.b
Tetraodontidae	ANCESTRAL SPECIES	16	ENSGT00390000001316	ENSGT01070000253744.a.a.a.b.a.a ##29	ENSGT00950000183060.a.a.d.a	ENSGT00940000163679	ENSGT00950000183157.a.a.b.d	ENSGT00970000196908	ENSGT00940000167399	ENSGT00940000154535.B	ENSGT00940000159148.b	ENSGT00940000163551.j	ENSGT00950000183047.c.a.b	ENSGT00940000154130.a.a.a	ENSGT00940000159125	ENSGT00390000001945	ENSGT00640000091578	ENSGT00530000063725.p.e.a #22	ENSGT01100000263598	ENSGT00950000182960.a.a.b.e.b	ENSGT00390000015109	ENSGT00940000153974.A	ENSGT00400000022459	ENSGT00390000010052.b	ENSGT00390000013127.b	ENSGT00390000009298	ENSGT00940000155335.s.a	ENSGT00940000156222.a.b.l	ENSGT00390000002886.a.a.a	ENSGT00940000162658.b	ENSGT00390000002164.b	ENSGT00940000177139	ENSGT00950000183183.b.a
Fugu	MODERN SPECIES	8	mad1l1 (ENSTRUG00000015158)	ENSTRUG00000033311 ##29	ENSTRUG00000029257	ttyh3b (ENSTRUG00000014928)	ENSTRUG00000014909	ENSTRUG00000014882	ENSTRUG00000029471	ENSTRUG00000032311	OLFM2 (ENSTRUG00000013986)	ENSTRUG00000013979	TRIP10 (ENSTRUG00000013881)	ENSTRUG00000013754	VAV1 (ENSTRUG00000013652)	UBL5 (ENSTRUG00000013643)	pin1 (ENSTRUG00000013606)	ENSTRUG00000026524 #22	ENSTRUG00000025485	ACTB (ENSTRUG00000020378)	fbxl18 (ENSTRUG00000013524)	PTCD1 (ENSTRUG00000013471)	zgc:112980 (ENSTRUG00000020136)	ENSTRUG00000013435	mief2 (ENSTRUG00000024936)	alkbh5 (ENSTRUG00000013324)	ENSTRUG00000012978	hapstr1b (ENSTRUG00000012950)	abcg2b (ENSTRUG00000012715)	ENSTRUG00000020587	ENSTRUG00000028683	arpc1a (ENSTRUG00000012566)	radil (ENSTRUG00000012208)
Tetraodon	MODERN SPECIES	10	mad1l1 (ENSTNIG00000008255)	ENSTNIG00000000470 ##29	ENSTNIG00000008256	ttyh3b (ENSTNIG00000008257)	ENSTNIG00000008258	ENSTNIG00000008259	plk1 (ENSTNIG00000008260)	ENSTNIG00000008261	col5a3b (ENSTNIG00000008262)	OLFM2 (ENSTNIG00000008263)	TRIP10 (ENSTNIG00000008264)	ENSTNIG00000008265	ENSTNIG00000000930	VAV1 (ENSTNIG00000008266)	UBL5 (ENSTNIG00000008267)	ENSTNIG00000008268 #22	ENSTNIG00000008269	fbxl18 (ENSTNIG00000008270)	PTCD1 (ENSTNIG00000008271)	zgc:112980 (ENSTNIG00000008272)	smcr8b (ENSTNIG00000008273)	mief2 (ENSTNIG00000008274)	alkbh5 (ENSTNIG00000008275)	MYO15A (ENSTNIG00000008276)	ENSTNIG00000008277	hapstr1b (ENSTNIG00000008278)	GNA12 (ENSTNIG00000008279)	ENSTNIG00000002138	ENSTNIG00000004649	EIF3B (ENSTNIG00000004648)	brat1 (ENSTNIG00000004647)
Eupecaria_A	ANCESTRAL SPECIES	3	ENSGT00390000014423	ENSGT00940000155412.a.a.b	ENSGT00940000154535.B	ENSGT00950000183249	ENSGT00940000162394	ENSGT00940000159148.b	ENSGT01060000248589.A.d	ENSGT00940000154615.i.a.b	ENSGT00950000183047.c.a.b	ENSGT00940000154130.a.a.a	ENSGT00940000159125	ENSGT00390000001945	ENSGT00640000091578	ENSGT00990000204057	ENSGT00530000063725.p.f #22	ENSGT00530000063725.p.e.a #22	ENSGT00530000063725.p.e.b #22	ENSGT01100000263598	ENSGT00950000182960.a.a.b.e.b	ENSGT00390000015109	ENSGT00940000153974.A	ENSGT00400000022459	ENSGT00390000010052.b	ENSGT00390000013127.b	ENSGT00390000009298	ENSGT00930000151032.A.c.a	ENSGT00940000155335.s.a	ENSGT00940000156222.a.b	ENSGT00390000002886.a.a.a	ENSGT00940000162658.b	ENSGT00390000002164.b
Eupecaria_B	ANCESTRAL SPECIES	1	ENSGT00940000163566.a.a	ENSGT00940000157752	ENSGT00390000014423	ENSGT00940000155412.a.a.b	ENSGT00940000154535.B	ENSGT00940000159148.b	ENSGT01060000248589.A.d	ENSGT00940000154615.i.a.b	ENSGT00950000183047.c.a.b	ENSGT00940000154130.a.a.a	ENSGT00940000159125	ENSGT00390000001945	ENSGT00640000091578	ENSGT00990000204057	ENSGT00530000063725.p.f #22	ENSGT00530000063725.p.e.a #22	ENSGT00530000063725.p.e.b #22	ENSGT01100000263598	ENSGT00950000182960.a.a.b.e.b	ENSGT00390000015109	ENSGT00940000153974.A	ENSGT00400000022459	ENSGT00390000010052.b	ENSGT00390000013127.b	ENSGT00390000009298	ENSGT00930000151032.A.c.a	ENSGT00940000155335.s.a	ENSGT00940000156222.a.b	ENSGT00390000002886.a.a.a	ENSGT00940000162658.b	ENSGT00390000002164.b
Eupecaria_C	ANCESTRAL SPECIES	14	ENSGT00940000163566.a.a	ENSGT00940000157752	ENSGT00390000014423	ENSGT00940000155412.a.a.b	ENSGT00940000154535.B	ENSGT00940000162394	ENSGT00940000159148.b	ENSGT01060000248589.A.d	ENSGT00940000154615.i.a.b	ENSGT00950000183047.c.a.b	ENSGT00940000154130.a.a.a	ENSGT00940000159125	ENSGT00390000001945	ENSGT00640000091578	ENSGT00530000063725.p.f #22	ENSGT00530000063725.p.e.a #22	ENSGT00530000063725.p.e.b #22	ENSGT01100000263598	ENSGT00950000182960.a.a.b.e.b	ENSGT00390000015109	ENSGT00940000153974.A	ENSGT00400000022459	ENSGT00390000010052.b	ENSGT00390000013127.b	ENSGT00390000009298	ENSGT00940000155335.s.a	ENSGT00940000156222.a.b	ENSGT00390000002886.a.a.a	ENSGT00940000165949	ENSGT00940000155366.b.b.d.a	ENSGT00950000183183.b.b
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	13	ENSGT00950000183157.a.a.b.d	ENSGT00940000163566.a.a	ENSGT00940000157752	ENSGT00390000014423	ENSGT00940000155412.a.a.b	ENSGT00940000154535.B	ENSGT00940000159148.b	ENSGT01060000248589.A.d	ENSGT00940000154615.i.a.b	ENSGT00950000183047.c.a.b	ENSGT00940000154130.a.a.a	ENSGT00940000159125	ENSGT00390000001945	ENSGT00640000091578	ENSGT00530000063725.p.f #22	ENSGT00530000063725.p.e.a #22	ENSGT00530000063725.p.e.b #22	ENSGT01100000263598	ENSGT00950000182960.a.a.b.e.b	ENSGT00390000015109	ENSGT00940000153974.A	ENSGT00400000022459	ENSGT00390000010052.b	ENSGT00390000013127.b	ENSGT00390000009298	ENSGT00940000155335.s.a	ENSGT00940000156222.a.b	ENSGT00390000002886.a.a.a	ENSGT00940000162658.b	ENSGT00940000177139	ENSGT00940000155366.b.b.d.a
European seabass	MODERN SPECIES	20	ENSDLAG00005021531	ENSDLAG00005021518	rdh8b (ENSDLAG00005021516)	ENSDLAG00005020790	olfm2b (ENSDLAG00005020774)	ENSDLAG00005027198	ENSDLAG00005028231	ENSDLAG00005003231	TRIP10 (ENSDLAG00005019668)	ENSDLAG00005019634	VAV1 (ENSDLAG00005018480)	ENSDLAG00005018446	ENSDLAG00005018433	ENSDLAG00005017457 #22	ENSDLAG00005018416 #22	ENSDLAG00005005172 #22	ENSDLAG00005005392 #22	ENSDLAG00005018387	ENSDLAG00005018358	ENSDLAG00005018351	zgc:112980 (ENSDLAG00005018308)	smcr8b (ENSDLAG00005018266)	mief2 (ENSDLAG00005018251)	alkbh5 (ENSDLAG00005018238)	ENSDLAG00005032865	ENSDLAG00005017302	ENSDLAG00005033020	abcg2b (ENSDLAG00005017097)	ENSDLAG00005017086	ENSDLAG00005016847	MMD2 (ENSDLAG00005032987)
Percomorphaceae_D	ANCESTRAL SPECIES		ENSGT00950000183157.a.a.b.d	ENSGT00940000163566.a.a	ENSGT00940000157752	ENSGT00390000014423	ENSGT00940000155412.a.a.b	ENSGT00940000154535.B	ENSGT00950000183249	ENSGT00940000159148.b	ENSGT00940000154615.i.a.b	ENSGT00950000183047.c.a.b	ENSGT00940000154130.a.a.a	ENSGT00940000159125	ENSGT00390000001945	ENSGT00640000091578	ENSGT00530000063725.p.f #22	ENSGT00530000063725.p.e.a #22	ENSGT00530000063725.p.e.b #22	ENSGT01100000263598	ENSGT00950000182960.a.a.b.e.b	ENSGT00390000015109	ENSGT00940000153974.A	ENSGT00400000022459	ENSGT00390000010052.b	ENSGT00390000013127.b	ENSGT00390000009298	ENSGT00930000151032.A.c.a	ENSGT00940000182552	ENSGT00940000155335.s.a	ENSGT00940000156222.a.b	ENSGT00390000002886.a.a.a	ENSGT00940000165949
Anabantaria	ANCESTRAL SPECIES	1	ENSGT00950000183060.a.a.d.a	ENSGT00940000163679	ENSGT00950000183157.a.a.b.d	ENSGT00940000163566.a.a	ENSGT00940000157752	ENSGT00390000014423	ENSGT00940000155412.a.a.b	ENSGT00940000154535.B	ENSGT00940000159148.b	ENSGT00940000154615.i.a.b	ENSGT00950000183047.c.a.b	ENSGT00940000154130.a.a.a	ENSGT00940000159125	ENSGT00390000001945	ENSGT00640000091578	ENSGT00530000063725.p.e.a #22	ENSGT01100000263598	ENSGT00950000182960.a.a.b.e.b	ENSGT00390000015109	ENSGT00940000153974.A	ENSGT00400000022459	ENSGT00390000010052.b	ENSGT00390000013127.b	ENSGT00390000009298	ENSGT00930000151032.A.c.a	ENSGT00940000155335.s.a	ENSGT00940000156222.a.b	ENSGT00390000002886.a.a.a	ENSGT00940000165949	ENSGT00390000002164.b	ENSGT00940000155366.b.b.d.a
Anabantoidei	ANCESTRAL SPECIES		ENSGT00950000183060.a.a.d.a	ENSGT00940000163679	ENSGT00950000183157.a.a.b.d	ENSGT00940000163566.a.a	ENSGT00940000157752	ENSGT00390000014423	ENSGT00940000155412.a.a.b	ENSGT00940000154535.B	ENSGT00940000159148.b	ENSGT00940000154615.i.a.b	ENSGT00950000183047.c.a.b	ENSGT00940000154130.a.a.a	ENSGT00940000159125	ENSGT00390000001945	ENSGT00640000091578	ENSGT00530000063725.p.e.a #22	ENSGT01100000263598	ENSGT00950000182960.a.a.b.e.b	ENSGT00390000015109	ENSGT00940000153974.A	ENSGT00400000022459	ENSGT00390000010052.b	ENSGT00390000013127.b	ENSGT00390000009298	ENSGT00940000155335.s.a	ENSGT00940000156222.a.b	ENSGT00390000002886.a.a.a	ENSGT00940000165949	ENSGT00390000002164.b	ENSGT00940000162658.b	ENSGT00940000173775
Climbing perch	MODERN SPECIES		ENSATEG00000005359	ENSATEG00000026258	ENSATEG00000005392	ENSATEG00000027547	ENSATEG00000028057	ENSATEG00000005657	rdh8b (ENSATEG00000005674)	ENSATEG00000005712	olfm2b (ENSATEG00000006219)	ENSATEG00000029982	TRIP10 (ENSATEG00000006265)	ENSATEG00000006276	VAV1 (ENSATEG00000006284)	ENSATEG00000006411	ENSATEG00000006436	ENSATEG00000006475 #22	ENSATEG00000006970	ENSATEG00000006980	fbxl18 (ENSATEG00000007008)	ENSATEG00000007016	zgc:112980 (ENSATEG00000007024)	smcr8b (ENSATEG00000007148)	mief2 (ENSATEG00000007155)	alkbh5 (ENSATEG00000007186)	ENSATEG00000007193	ENSATEG00000007389	ENSATEG00000007469	abcg2b (ENSATEG00000007498)	ENSATEG00000007784	ENSATEG00000028845	ENSATEG00000007824
Carangaria	ANCESTRAL SPECIES		ENSGT00950000183157.a.a.b.d	ENSGT00940000163566.a.a	ENSGT00940000157752	ENSGT00390000014423	ENSGT00940000155412.a.a.b	ENSGT00940000154535.B	ENSGT00950000183249	ENSGT00940000159148.b	ENSGT00940000154615.i.a.b	ENSGT00950000183047.c.a.b	ENSGT00940000154130.a.a.a	ENSGT00940000159125	ENSGT00390000001945	ENSGT00640000091578	ENSGT00530000063725.p.f #22	ENSGT00530000063725.p.e.a #22	ENSGT00530000063725.p.e.b #22	ENSGT01100000263598	ENSGT00950000182960.a.a.b.e.b	ENSGT00390000015109	ENSGT00940000153974.A	ENSGT00400000022459	ENSGT00390000010052.b	ENSGT00390000013127.b	ENSGT00390000009298	ENSGT00930000151032.A.c.a	ENSGT00940000182552	ENSGT00940000155335.s.a	ENSGT00940000156222.a.b	ENSGT00390000002886.a.a.a	ENSGT00940000165949
Carangaria_A	ANCESTRAL SPECIES	14	ENSGT00940000163679	ENSGT00950000183157.a.a.b.d	ENSGT00940000163566.a.a	ENSGT00940000157752	ENSGT00940000155412.a.a.b	ENSGT00940000154535.B	ENSGT00950000183249	ENSGT00940000159148.b	ENSGT00940000154615.i.a.b	ENSGT00950000183047.c.a.b	ENSGT00940000154130.a.a.a	ENSGT00940000159125	ENSGT00390000001945	ENSGT00640000091578	ENSGT00530000063725.p.f #22	ENSGT00530000063725.p.e.a #22	ENSGT00530000063725.p.e.b #22	ENSGT01100000263598	ENSGT00950000182960.a.a.b.e.b	ENSGT00390000015109	ENSGT00940000153974.A	ENSGT00400000022459	ENSGT00390000010052.b	ENSGT00390000013127.b	ENSGT00390000009298	ENSGT00930000151032.A.c.a	ENSGT00940000182552	ENSGT00940000156222.a.b	ENSGT00390000002886.a.a.a	ENSGT00940000165949	ENSGT00940000173775
Seriola	ANCESTRAL SPECIES	18	ENSGT00940000163679	ENSGT00950000183157.a.a.b.d	ENSGT00940000163566.a.a	ENSGT00940000157752	ENSGT00940000155412.a.a.b	ENSGT00940000154535.B	ENSGT00950000183249	ENSGT00940000159148.b	ENSGT00940000154615.i.a.b	ENSGT00950000183047.c.a.b	ENSGT00940000154130.a.a.a	ENSGT00940000159125	ENSGT00390000001945	ENSGT00640000091578	ENSGT00530000063725.p.f #22	ENSGT00530000063725.p.e.a #22	ENSGT00530000063725.p.e.b #22	ENSGT01100000263598	ENSGT00950000182960.a.a.b.e.b	ENSGT00390000015109	ENSGT00940000153974.A	ENSGT00400000022459	ENSGT00390000010052.b	ENSGT00390000013127.b	ENSGT00390000009298	ENSGT00930000151032.A.c.a	ENSGT00940000182552	ENSGT00940000156222.a.b	ENSGT00390000002886.a.a.a	ENSGT00940000165949	ENSGT00940000173775
Greater amberjack	MODERN SPECIES	13	ENSSDUG00000014952	ENSSDUG00000015000	rasd3 (ENSSDUG00000015016)	rasd3 (ENSSDUG00000015024)	PLK1 (ENSSDUG00000015035)	rdh8b (ENSSDUG00000015069)	ENSSDUG00000015087	ENSSDUG00000015109	OLFM2 (ENSSDUG00000015114)	MFAP4 (ENSSDUG00000015158)	TRIP10 (ENSSDUG00000015174)	ENSSDUG00000015235	VAV1 (ENSSDUG00000015274)	UBL5 (ENSSDUG00000015336)	pin1 (ENSSDUG00000015348)	ENSSDUG00000015363 #22	ENSSDUG00000015430	ENSSDUG00000015586	ENSSDUG00000015606	ENSSDUG00000015634	fbxl18 (ENSSDUG00000015649)	PTCD1 (ENSSDUG00000015671)	smcr8b (ENSSDUG00000015863)	mief2 (ENSSDUG00000015872)	alkbh5 (ENSSDUG00000015880)	ENSSDUG00000015899	ENSSDUG00000015946	ENSSDUG00000015968	abcg2b (ENSSDUG00000016042)	hapstr1b (ENSSDUG00000016096)	ENSSDUG00000016114
Yellowtail amberjack	MODERN SPECIES	3195	ENSSLDG00000016310	ENSSLDG00000016280	rasd3 (ENSSLDG00000016267)	PLK1 (ENSSLDG00000016237)	rdh8b (ENSSLDG00000016188)	ENSSLDG00000016153	ENSSLDG00000016143	OLFM2 (ENSSLDG00000016097)	MFAP4 (ENSSLDG00000016068)	TRIP10 (ENSSLDG00000015981)	ENSSLDG00000015879	VAV1 (ENSSLDG00000015815)	UBL5 (ENSSLDG00000015781)	pin1 (ENSSLDG00000015758)	ENSSLDG00000015653 #22	ENSSLDG00000014616 #22	ENSSLDG00000014378 #22	ENSSLDG00000014362	ENSSLDG00000014332	fbxl18 (ENSSLDG00000014309)	PTCD1 (ENSSLDG00000014261)	zgc:112980 (ENSSLDG00000014217)	smcr8b (ENSSLDG00000014199)	mgat4b (ENSSLDG00000014173)	canx (ENSSLDG00000014150)	MAML1 (ENSSLDG00000014125)	LTC4S (ENSSLDG00000014108)	emx3 (ENSSLDG00000014095)	b4galt7 (ENSSLDG00000014080)	ENSSLDG00000014068	ENSSLDG00000014054
Barramundi perch	MODERN SPECIES	798													ENSLCAG00010011857	UBL5 (ENSLCAG00010011860)	pin1 (ENSLCAG00010011868)	ENSLCAG00010011880 #22	ENSLCAG00010011885	ENSLCAG00010011891
Percomorphaceae_B	ANCESTRAL SPECIES																	ENSGT00530000063725.p.e.b #22
Ovalentaria	ANCESTRAL SPECIES																	ENSGT00530000063725.p.e.b #22
Ovalentaria_B	ANCESTRAL SPECIES																	ENSGT00530000063725.p.e.b #22
Pomacentridae	ANCESTRAL SPECIES	8	ENSGT00390000014423	ENSGT00390000015109	ENSGT00940000155412.a.a.b	ENSGT00940000154535.B	ENSGT00940000178300	ENSGT00950000183249	ENSGT00940000159148.b	ENSGT01060000248589.A.d	ENSGT00940000154615.i.a.b	ENSGT00950000183047.c.a.b	ENSGT00940000154130.a.a.a	ENSGT00940000159125	ENSGT00390000001945	ENSGT00640000091578	ENSGT00990000204057.a	ENSGT00530000063725.p.e.b #22	ENSGT01100000263598	ENSGT00950000182960.a.a.b.e.b	ENSGT00940000153974.A	ENSGT00940000175728	ENSGT00390000010052.b	ENSGT00390000013127.b	ENSGT00390000009298	ENSGT00930000151032.A.c.a	ENSGT00940000156222.a.b	ENSGT00390000002886.a.a.a	ENSGT00940000165949	ENSGT00940000173775	ENSGT00940000177139	ENSGT00950000183183.b.a	ENSGT00950000183183.b.b
Bicolor damselfish	MODERN SPECIES	1045								ENSSPAG00000012654	MFAP4 (ENSSPAG00000012644)	TRIP10 (ENSSPAG00000011465)	ENSSPAG00000011354	VAV1 (ENSSPAG00000011208)	UBL5 (ENSSPAG00000011192)	pin1 (ENSSPAG00000011171)	ENSSPAG00000011136	ENSSPAG00000011118 #22	ENSSPAG00000011106	ENSSPAG00000011070	ENSSPAG00000011060	PTCD1 (ENSSPAG00000011049)	smcr8b (ENSSPAG00000011035)	mief2 (ENSSPAG00000011024)	alkbh5 (ENSSPAG00000011009)	ENSSPAG00000010989	ENSSPAG00000010976	ENSSPAG00000010963
Percomorphaceae_C	ANCESTRAL SPECIES	3	ENSGT00940000155412.a.a.b	ENSGT00940000154535.B	ENSGT00950000183249	ENSGT00940000162394	ENSGT00940000159148.b	ENSGT01060000248589.A.d	ENSGT00940000154615.i.a.b	ENSGT00950000183047.c.a.b	ENSGT00940000154130.a.a.a	ENSGT00940000159125	ENSGT00390000001945	ENSGT00640000091578	ENSGT00990000204057	ENSGT00530000063725.p.f #22	ENSGT00530000063725.p.e.a #22	ENSGT00530000063725.p.e.b #22	ENSGT01100000263598	ENSGT00950000182960.a.a.b.e.b	ENSGT00390000015109	ENSGT00940000153974.A	ENSGT00400000022459	ENSGT00390000010052.b	ENSGT00390000013127.b	ENSGT00390000009298	ENSGT00930000151032.A.c.a	ENSGT00940000182552	ENSGT00940000155335.s.a	ENSGT00940000156222.a.b	ENSGT00390000002886.a.a.a	ENSGT00940000165949	ENSGT00390000002164.b
Eupercaria	ANCESTRAL SPECIES	2	ENSGT00940000155412.a.a.b	ENSGT00940000154535.B	ENSGT00950000183249	ENSGT00940000162394	ENSGT00940000159148.b	ENSGT01060000248589.A.d	ENSGT00940000154615.i.a.b	ENSGT00950000183047.c.a.b	ENSGT00940000154130.a.a.a	ENSGT00940000159125	ENSGT00390000001945	ENSGT00640000091578	ENSGT00990000204057	ENSGT00530000063725.p.f #22	ENSGT00530000063725.p.e.a #22	ENSGT00530000063725.p.e.b #22	ENSGT01100000263598	ENSGT00950000182960.a.a.b.e.b	ENSGT00390000015109	ENSGT00940000153974.A	ENSGT00400000022459	ENSGT00390000010052.b	ENSGT00390000013127.b	ENSGT00390000009298	ENSGT00930000151032.A.c.a	ENSGT00940000155335.s.a	ENSGT00940000156222.a.b	ENSGT00390000002886.a.a.a	ENSGT00940000162658.b	ENSGT00390000002164.b	ENSGT00940000177139
Eupecaria_A	ANCESTRAL SPECIES	3	ENSGT00940000155412.a.a.b	ENSGT00940000154535.B	ENSGT00950000183249	ENSGT00940000162394	ENSGT00940000159148.b	ENSGT01060000248589.A.d	ENSGT00940000154615.i.a.b	ENSGT00950000183047.c.a.b	ENSGT00940000154130.a.a.a	ENSGT00940000159125	ENSGT00390000001945	ENSGT00640000091578	ENSGT00990000204057	ENSGT00530000063725.p.f #22	ENSGT00530000063725.p.e.a #22	ENSGT00530000063725.p.e.b #22	ENSGT01100000263598	ENSGT00950000182960.a.a.b.e.b	ENSGT00390000015109	ENSGT00940000153974.A	ENSGT00400000022459	ENSGT00390000010052.b	ENSGT00390000013127.b	ENSGT00390000009298	ENSGT00930000151032.A.c.a	ENSGT00940000155335.s.a	ENSGT00940000156222.a.b	ENSGT00390000002886.a.a.a	ENSGT00940000162658.b	ENSGT00390000002164.b	ENSGT00940000155366.b.b.d.a
Eupecaria_B	ANCESTRAL SPECIES	1	ENSGT00940000157752	ENSGT00390000014423	ENSGT00940000155412.a.a.b	ENSGT00940000154535.B	ENSGT00940000159148.b	ENSGT01060000248589.A.d	ENSGT00940000154615.i.a.b	ENSGT00950000183047.c.a.b	ENSGT00940000154130.a.a.a	ENSGT00940000159125	ENSGT00390000001945	ENSGT00640000091578	ENSGT00990000204057	ENSGT00530000063725.p.f #22	ENSGT00530000063725.p.e.a #22	ENSGT00530000063725.p.e.b #22	ENSGT01100000263598	ENSGT00950000182960.a.a.b.e.b	ENSGT00390000015109	ENSGT00940000153974.A	ENSGT00400000022459	ENSGT00390000010052.b	ENSGT00390000013127.b	ENSGT00390000009298	ENSGT00930000151032.A.c.a	ENSGT00940000155335.s.a	ENSGT00940000156222.a.b	ENSGT00390000002886.a.a.a	ENSGT00940000162658.b	ENSGT00390000002164.b	ENSGT00940000155366.b.b.d.a
Eupecaria_C	ANCESTRAL SPECIES	14	ENSGT00940000157752	ENSGT00390000014423	ENSGT00940000155412.a.a.b	ENSGT00940000154535.B	ENSGT00940000162394	ENSGT00940000159148.b	ENSGT01060000248589.A.d	ENSGT00940000154615.i.a.b	ENSGT00950000183047.c.a.b	ENSGT00940000154130.a.a.a	ENSGT00940000159125	ENSGT00390000001945	ENSGT00640000091578	ENSGT00530000063725.p.f #22	ENSGT00530000063725.p.e.a #22	ENSGT00530000063725.p.e.b #22	ENSGT01100000263598	ENSGT00950000182960.a.a.b.e.b	ENSGT00390000015109	ENSGT00940000153974.A	ENSGT00400000022459	ENSGT00390000010052.b	ENSGT00390000013127.b	ENSGT00390000009298	ENSGT00940000155335.s.a	ENSGT00940000156222.a.b	ENSGT00390000002886.a.a.a	ENSGT00940000165949	ENSGT00940000155366.b.b.d.a	ENSGT00950000183183.b.b	ENSGT00940000157972.d
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	13	ENSGT00940000163566.a.a	ENSGT00940000157752	ENSGT00390000014423	ENSGT00940000155412.a.a.b	ENSGT00940000154535.B	ENSGT00940000159148.b	ENSGT01060000248589.A.d	ENSGT00940000154615.i.a.b	ENSGT00950000183047.c.a.b	ENSGT00940000154130.a.a.a	ENSGT00940000159125	ENSGT00390000001945	ENSGT00640000091578	ENSGT00530000063725.p.f #22	ENSGT00530000063725.p.e.a #22	ENSGT00530000063725.p.e.b #22	ENSGT01100000263598	ENSGT00950000182960.a.a.b.e.b	ENSGT00390000015109	ENSGT00940000153974.A	ENSGT00400000022459	ENSGT00390000010052.b	ENSGT00390000013127.b	ENSGT00390000009298	ENSGT00940000155335.s.a	ENSGT00940000156222.a.b	ENSGT00390000002886.a.a.a	ENSGT00940000162658.b	ENSGT00940000177139	ENSGT00940000155366.b.b.d.a	ENSGT00950000183183.b.b
European seabass	MODERN SPECIES	20	ENSDLAG00005021518	rdh8b (ENSDLAG00005021516)	ENSDLAG00005020790	olfm2b (ENSDLAG00005020774)	ENSDLAG00005027198	ENSDLAG00005028231	ENSDLAG00005003231	TRIP10 (ENSDLAG00005019668)	ENSDLAG00005019634	VAV1 (ENSDLAG00005018480)	ENSDLAG00005018446	ENSDLAG00005018433	ENSDLAG00005017457 #22	ENSDLAG00005018416 #22	ENSDLAG00005005172 #22	ENSDLAG00005005392 #22	ENSDLAG00005018387	ENSDLAG00005018358	ENSDLAG00005018351	zgc:112980 (ENSDLAG00005018308)	smcr8b (ENSDLAG00005018266)	mief2 (ENSDLAG00005018251)	alkbh5 (ENSDLAG00005018238)	ENSDLAG00005032865	ENSDLAG00005017302	ENSDLAG00005033020	abcg2b (ENSDLAG00005017097)	ENSDLAG00005017086	ENSDLAG00005016847	MMD2 (ENSDLAG00005032987)	RADIL (ENSDLAG00005016712)
Percomorphaceae_D	ANCESTRAL SPECIES		ENSGT00940000163566.a.a	ENSGT00940000157752	ENSGT00390000014423	ENSGT00940000155412.a.a.b	ENSGT00940000154535.B	ENSGT00950000183249	ENSGT00940000159148.b	ENSGT00940000154615.i.a.b	ENSGT00950000183047.c.a.b	ENSGT00940000154130.a.a.a	ENSGT00940000159125	ENSGT00390000001945	ENSGT00640000091578	ENSGT00530000063725.p.f #22	ENSGT00530000063725.p.e.a #22	ENSGT00530000063725.p.e.b #22	ENSGT01100000263598	ENSGT00950000182960.a.a.b.e.b	ENSGT00390000015109	ENSGT00940000153974.A	ENSGT00400000022459	ENSGT00390000010052.b	ENSGT00390000013127.b	ENSGT00390000009298	ENSGT00930000151032.A.c.a	ENSGT00940000182552	ENSGT00940000155335.s.a	ENSGT00940000156222.a.b	ENSGT00390000002886.a.a.a	ENSGT00940000165949	ENSGT00390000002164.b
Carangaria	ANCESTRAL SPECIES		ENSGT00940000163566.a.a	ENSGT00940000157752	ENSGT00390000014423	ENSGT00940000155412.a.a.b	ENSGT00940000154535.B	ENSGT00950000183249	ENSGT00940000159148.b	ENSGT00940000154615.i.a.b	ENSGT00950000183047.c.a.b	ENSGT00940000154130.a.a.a	ENSGT00940000159125	ENSGT00390000001945	ENSGT00640000091578	ENSGT00530000063725.p.f #22	ENSGT00530000063725.p.e.a #22	ENSGT00530000063725.p.e.b #22	ENSGT01100000263598	ENSGT00950000182960.a.a.b.e.b	ENSGT00390000015109	ENSGT00940000153974.A	ENSGT00400000022459	ENSGT00390000010052.b	ENSGT00390000013127.b	ENSGT00390000009298	ENSGT00930000151032.A.c.a	ENSGT00940000182552	ENSGT00940000155335.s.a	ENSGT00940000156222.a.b	ENSGT00390000002886.a.a.a	ENSGT00940000165949	ENSGT00390000002164.b
Pleuronectoidei	ANCESTRAL SPECIES	26	ENSGT00940000163679	ENSGT00950000183157.a.a.b.d	ENSGT00940000163566.a.a	ENSGT00940000157752	ENSGT00390000014423	ENSGT00940000155412.a.a.b	ENSGT00940000154535.B	ENSGT00950000183249	ENSGT00940000159148.b	ENSGT00940000154615.i.a.b	ENSGT00950000183047.c.a.b	ENSGT00940000154130.a.a.a	ENSGT00940000159125	ENSGT00390000001945	ENSGT00640000091578	ENSGT00530000063725.p.e.b #22	ENSGT01100000263598	ENSGT00950000182960.a.a.b.e.a	ENSGT00950000182960.a.a.b.e.b	ENSGT00390000015109	ENSGT00940000153974.A	ENSGT00400000022459	ENSGT00390000010052.b	ENSGT00390000013127.b	ENSGT00390000009298	ENSGT00930000151032.A.c.a	ENSGT00940000167865	ENSGT00940000155335.s.a	ENSGT00940000156222.a.b	ENSGT00390000002886.a.a.a	ENSGT00940000165949
Turbot	MODERN SPECIES	20	ENSSMAG00000000631	ENSSMAG00000000584	ENSSMAG00000021545	ENSSMAG00000000565	ENSSMAG00000000544	ENSSMAG00000000536	ENSSMAG00000000530	ENSSMAG00000021482	ENSSMAG00000000520	ENSSMAG00000037037	TRIP10 (ENSSMAG00000000331)	ENSSMAG00000000306	VAV1 (ENSSMAG00000000269)	ENSSMAG00000000260	ENSSMAG00000000252	ENSSMAG00000000242 #22	ENSSMAG00000029471	actb1 (ENSSMAG00000000233)	fbxl18 (ENSSMAG00000000229)	ENSSMAG00000000218	ENSSMAG00000000211	smcr8b (ENSSMAG00000000203)	mief2 (ENSSMAG00000000199)	alkbh5 (ENSSMAG00000000195)	ENSSMAG00000030960	ENSSMAG00000000181	ENSSMAG00000033041	ENSSMAG00000000164	ENSSMAG00000000159	ENSSMAG00000000155	ENSSMAG00000000139
Carangaria_A	ANCESTRAL SPECIES	14	ENSGT00950000183157.a.a.b.d	ENSGT00940000163566.a.a	ENSGT00940000157752	ENSGT00940000155412.a.a.b	ENSGT00940000154535.B	ENSGT00950000183249	ENSGT00940000159148.b	ENSGT00940000154615.i.a.b	ENSGT00950000183047.c.a.b	ENSGT00940000154130.a.a.a	ENSGT00940000159125	ENSGT00390000001945	ENSGT00640000091578	ENSGT00530000063725.p.f #22	ENSGT00530000063725.p.e.a #22	ENSGT00530000063725.p.e.b #22	ENSGT01100000263598	ENSGT00950000182960.a.a.b.e.b	ENSGT00390000015109	ENSGT00940000153974.A	ENSGT00400000022459	ENSGT00390000010052.b	ENSGT00390000013127.b	ENSGT00390000009298	ENSGT00930000151032.A.c.a	ENSGT00940000182552	ENSGT00940000156222.a.b	ENSGT00390000002886.a.a.a	ENSGT00940000165949	ENSGT00940000173775	ENSGT00390000002164.b
Seriola	ANCESTRAL SPECIES	18	ENSGT00950000183157.a.a.b.d	ENSGT00940000163566.a.a	ENSGT00940000157752	ENSGT00940000155412.a.a.b	ENSGT00940000154535.B	ENSGT00950000183249	ENSGT00940000159148.b	ENSGT00940000154615.i.a.b	ENSGT00950000183047.c.a.b	ENSGT00940000154130.a.a.a	ENSGT00940000159125	ENSGT00390000001945	ENSGT00640000091578	ENSGT00530000063725.p.f #22	ENSGT00530000063725.p.e.a #22	ENSGT00530000063725.p.e.b #22	ENSGT01100000263598	ENSGT00950000182960.a.a.b.e.b	ENSGT00390000015109	ENSGT00940000153974.A	ENSGT00400000022459	ENSGT00390000010052.b	ENSGT00390000013127.b	ENSGT00390000009298	ENSGT00930000151032.A.c.a	ENSGT00940000182552	ENSGT00940000156222.a.b	ENSGT00390000002886.a.a.a	ENSGT00940000165949	ENSGT00940000173775	ENSGT00390000002164.b
Yellowtail amberjack	MODERN SPECIES	3195	ENSSLDG00000016280	rasd3 (ENSSLDG00000016267)	PLK1 (ENSSLDG00000016237)	rdh8b (ENSSLDG00000016188)	ENSSLDG00000016153	ENSSLDG00000016143	OLFM2 (ENSSLDG00000016097)	MFAP4 (ENSSLDG00000016068)	TRIP10 (ENSSLDG00000015981)	ENSSLDG00000015879	VAV1 (ENSSLDG00000015815)	UBL5 (ENSSLDG00000015781)	pin1 (ENSSLDG00000015758)	ENSSLDG00000015653 #22	ENSSLDG00000014616 #22	ENSSLDG00000014378 #22	ENSSLDG00000014362	ENSSLDG00000014332	fbxl18 (ENSSLDG00000014309)	PTCD1 (ENSSLDG00000014261)	zgc:112980 (ENSSLDG00000014217)	smcr8b (ENSSLDG00000014199)	mgat4b (ENSSLDG00000014173)	canx (ENSSLDG00000014150)	MAML1 (ENSSLDG00000014125)	LTC4S (ENSSLDG00000014108)	emx3 (ENSSLDG00000014095)	b4galt7 (ENSSLDG00000014080)	ENSSLDG00000014068	ENSSLDG00000014054	ENSSLDG00000014045
Barramundi perch	MODERN SPECIES	399												ENSLCAG00010007565	UBL5 (ENSLCAG00010007558)	pin1 (ENSLCAG00010007549)	ENSLCAG00010007539 #22	ENSLCAG00010007529 #22	ENSLCAG00010007517	ENSLCAG00010007316	fbxl18 (ENSLCAG00010007244)	PTCD1 (ENSLCAG00010007233)	zgc:112980 (ENSLCAG00010007222)	smcr8b (ENSLCAG00010007212)	mief2 (ENSLCAG00010007204)	alkbh5 (ENSLCAG00010007194)	ENSLCAG00010007181	ENSLCAG00010007173	ENSLCAG00010007104	hapstr1b (ENSLCAG00010007072)	abcg2c (ENSLCAG00010007066)	ENSLCAG00010007061	ENSLCAG00010007057
Percomorphaceae_B	ANCESTRAL SPECIES	176															ENSGT00990000204057	ENSGT00530000063725.p.f #22
Percomorphaceae_C	ANCESTRAL SPECIES	3	ENSGT00940000157752	ENSGT00390000014423	ENSGT00940000155412.a.a.b	ENSGT00940000154535.B	ENSGT00950000183249	ENSGT00940000162394	ENSGT00940000159148.b	ENSGT01060000248589.A.d	ENSGT00940000154615.i.a.b	ENSGT00950000183047.c.a.b	ENSGT00940000154130.a.a.a	ENSGT00940000159125	ENSGT00390000001945	ENSGT00640000091578	ENSGT00990000204057	ENSGT00530000063725.p.f #22	ENSGT00530000063725.p.e.a #22	ENSGT00530000063725.p.e.b #22	ENSGT01100000263598	ENSGT00950000182960.a.a.b.e.b	ENSGT00390000015109	ENSGT00940000153974.A	ENSGT00400000022459	ENSGT00390000010052.b	ENSGT00390000013127.b	ENSGT00390000009298	ENSGT00930000151032.A.c.a	ENSGT00940000182552	ENSGT00940000155335.s.a	ENSGT00940000156222.a.b	ENSGT00390000002886.a.a.a
Eupercaria	ANCESTRAL SPECIES	2	ENSGT00940000157752	ENSGT00390000014423	ENSGT00940000155412.a.a.b	ENSGT00940000154535.B	ENSGT00950000183249	ENSGT00940000162394	ENSGT00940000159148.b	ENSGT01060000248589.A.d	ENSGT00940000154615.i.a.b	ENSGT00950000183047.c.a.b	ENSGT00940000154130.a.a.a	ENSGT00940000159125	ENSGT00390000001945	ENSGT00640000091578	ENSGT00990000204057	ENSGT00530000063725.p.f #22	ENSGT00530000063725.p.e.a #22	ENSGT00530000063725.p.e.b #22	ENSGT01100000263598	ENSGT00950000182960.a.a.b.e.b	ENSGT00390000015109	ENSGT00940000153974.A	ENSGT00400000022459	ENSGT00390000010052.b	ENSGT00390000013127.b	ENSGT00390000009298	ENSGT00930000151032.A.c.a	ENSGT00940000155335.s.a	ENSGT00940000156222.a.b	ENSGT00390000002886.a.a.a	ENSGT00940000162658.b
Tetraodontidae	ANCESTRAL SPECIES	113						ENSGT00940000161209	ENSGT00940000156314.a	ENSGT00390000006930	ENSGT00940000160144	ENSGT00940000164818.c.b	ENSGT00940000153840.a.a.a.b	ENSGT00950000182969.B.c.a.a.b.a.a.a.a.a.b	ENSGT00950000182969.B.c.a.a.b.a.a.a.a.b	ENSGT00950000182969.B.c.a.a.b.a.a.a.a.a.a.a	ENSGT01090000260030.a.b.b.b	ENSGT00530000063725.p.f #22	ENSGT01030000234627.a.a.d.b	ENSGT00940000164729.a.a.c	ENSGT00390000015278	ENSGT00940000169602	ENSGT00770000121664
Tetraodon	MODERN SPECIES	18	ENSTNIG00000006503	mvp (ENSTNIG00000006502)	CASKIN2 (ENSTNIG00000006501)	jmjd6 (ENSTNIG00000006500)	mettl23 (ENSTNIG00000006499)	ENSTNIG00000006498	spns1 (ENSTNIG00000006497)	ENSTNIG00000001111	sgf29 (ENSTNIG00000001984)	sh2b1 (ENSTNIG00000006495)	kpnb1 (ENSTNIG00000006494)	zgc:158376 (ENSTNIG00000006493)	ENSTNIG00000000539	btr30 (ENSTNIG00000006492)	ENSTNIG00000006491	ENSTNIG00000006490 #22	stx1b (ENSTNIG00000006489)	ENSTNIG00000001159	thoc6 (ENSTNIG00000006488)	ENSTNIG00000006487	ENSTNIG00000004926	ENSTNIG00000000992	si:dkeyp-113d7.1 (ENSTNIG00000003148)	ENSTNIG00000003147	ENSTNIG00000001206	ENSTNIG00000019537	ENSTNIG00000019521	RAPGEFL1 (ENSTNIG00000003207)	casc3 (ENSTNIG00000003208)	ENSTNIG00000019576	ENSTNIG00000003209
Eupecaria_A	ANCESTRAL SPECIES	3	ENSGT00940000157752	ENSGT00390000014423	ENSGT00940000155412.a.a.b	ENSGT00940000154535.B	ENSGT00950000183249	ENSGT00940000162394	ENSGT00940000159148.b	ENSGT01060000248589.A.d	ENSGT00940000154615.i.a.b	ENSGT00950000183047.c.a.b	ENSGT00940000154130.a.a.a	ENSGT00940000159125	ENSGT00390000001945	ENSGT00640000091578	ENSGT00990000204057	ENSGT00530000063725.p.f #22	ENSGT00530000063725.p.e.a #22	ENSGT00530000063725.p.e.b #22	ENSGT01100000263598	ENSGT00950000182960.a.a.b.e.b	ENSGT00390000015109	ENSGT00940000153974.A	ENSGT00400000022459	ENSGT00390000010052.b	ENSGT00390000013127.b	ENSGT00390000009298	ENSGT00930000151032.A.c.a	ENSGT00940000155335.s.a	ENSGT00940000156222.a.b	ENSGT00390000002886.a.a.a	ENSGT00940000162658.b
Eupecaria_B	ANCESTRAL SPECIES	1	ENSGT00950000183157.a.a.b.d	ENSGT00940000163566.a.a	ENSGT00940000157752	ENSGT00390000014423	ENSGT00940000155412.a.a.b	ENSGT00940000154535.B	ENSGT00940000159148.b	ENSGT01060000248589.A.d	ENSGT00940000154615.i.a.b	ENSGT00950000183047.c.a.b	ENSGT00940000154130.a.a.a	ENSGT00940000159125	ENSGT00390000001945	ENSGT00640000091578	ENSGT00990000204057	ENSGT00530000063725.p.f #22	ENSGT00530000063725.p.e.a #22	ENSGT00530000063725.p.e.b #22	ENSGT01100000263598	ENSGT00950000182960.a.a.b.e.b	ENSGT00390000015109	ENSGT00940000153974.A	ENSGT00400000022459	ENSGT00390000010052.b	ENSGT00390000013127.b	ENSGT00390000009298	ENSGT00930000151032.A.c.a	ENSGT00940000155335.s.a	ENSGT00940000156222.a.b	ENSGT00390000002886.a.a.a	ENSGT00940000162658.b
Eupecaria_C	ANCESTRAL SPECIES	14	ENSGT00950000183157.a.a.b.d	ENSGT00940000163566.a.a	ENSGT00940000157752	ENSGT00390000014423	ENSGT00940000155412.a.a.b	ENSGT00940000154535.B	ENSGT00940000162394	ENSGT00940000159148.b	ENSGT01060000248589.A.d	ENSGT00940000154615.i.a.b	ENSGT00950000183047.c.a.b	ENSGT00940000154130.a.a.a	ENSGT00940000159125	ENSGT00390000001945	ENSGT00640000091578	ENSGT00530000063725.p.f #22	ENSGT00530000063725.p.e.a #22	ENSGT00530000063725.p.e.b #22	ENSGT01100000263598	ENSGT00950000182960.a.a.b.e.b	ENSGT00390000015109	ENSGT00940000153974.A	ENSGT00400000022459	ENSGT00390000010052.b	ENSGT00390000013127.b	ENSGT00390000009298	ENSGT00940000155335.s.a	ENSGT00940000156222.a.b	ENSGT00390000002886.a.a.a	ENSGT00940000165949	ENSGT00940000155366.b.b.d.a
Gilthead seabream	MODERN SPECIES		FSCN1 (ENSSAUG00010002335)	rasd3 (ENSSAUG00010002339)	PLK1 (ENSSAUG00010002357)	ENSSAUG00010002382	rdh8b (ENSSAUG00010002383)	ENSSAUG00010002439	ENSSAUG00010003674	OLFM2 (ENSSAUG00010003679)	ENSSAUG00010003690	MFAP4 (ENSSAUG00010003700)	TRIP10 (ENSSAUG00010003713)	ENSSAUG00010003744	VAV1 (ENSSAUG00010003790)	UBL5 (ENSSAUG00010005077)	pin1 (ENSSAUG00010005079)	ENSSAUG00010005083 #22	ENSSAUG00010005085	ENSSAUG00010005086	ENSSAUG00010005089	ENSSAUG00010005095	fbxl18 (ENSSAUG00010005101)	PTCD1 (ENSSAUG00010005102)	smcr8b (ENSSAUG00010005103)	mief2 (ENSSAUG00010005104)	alkbh5 (ENSSAUG00010002796)	MYO15A (ENSSAUG00010002828)	ENSSAUG00010002933	ENSSAUG00010002979	cyp3a65 (ENSSAUG00010003022)	hapstr1b (ENSSAUG00010003278)	abcg2c (ENSSAUG00010003305)
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	13	ENSGT00940000163679	ENSGT00950000183157.a.a.b.d	ENSGT00940000163566.a.a	ENSGT00940000157752	ENSGT00390000014423	ENSGT00940000155412.a.a.b	ENSGT00940000154535.B	ENSGT00940000159148.b	ENSGT01060000248589.A.d	ENSGT00940000154615.i.a.b	ENSGT00950000183047.c.a.b	ENSGT00940000154130.a.a.a	ENSGT00940000159125	ENSGT00390000001945	ENSGT00640000091578	ENSGT00530000063725.p.f #22	ENSGT00530000063725.p.e.a #22	ENSGT00530000063725.p.e.b #22	ENSGT01100000263598	ENSGT00950000182960.a.a.b.e.b	ENSGT00390000015109	ENSGT00940000153974.A	ENSGT00400000022459	ENSGT00390000010052.b	ENSGT00390000013127.b	ENSGT00390000009298	ENSGT00940000155335.s.a	ENSGT00940000156222.a.b	ENSGT00390000002886.a.a.a	ENSGT00940000162658.b	ENSGT00940000177139
European seabass	DUPLICATION
European seabass	MODERN SPECIES	20	ENSDLAG00005021665	ENSDLAG00005021662	ENSDLAG00005021531	ENSDLAG00005021518	rdh8b (ENSDLAG00005021516)	ENSDLAG00005020790	olfm2b (ENSDLAG00005020774)	ENSDLAG00005027198	ENSDLAG00005028231	ENSDLAG00005003231	TRIP10 (ENSDLAG00005019668)	ENSDLAG00005019634	VAV1 (ENSDLAG00005018480)	ENSDLAG00005018446	ENSDLAG00005018433	ENSDLAG00005017457 #22	ENSDLAG00005018416 #22	ENSDLAG00005005172 #22	ENSDLAG00005005392 #22	ENSDLAG00005018387	ENSDLAG00005018358	ENSDLAG00005018351	zgc:112980 (ENSDLAG00005018308)	smcr8b (ENSDLAG00005018266)	mief2 (ENSDLAG00005018251)	alkbh5 (ENSDLAG00005018238)	ENSDLAG00005032865	ENSDLAG00005017302	ENSDLAG00005033020	abcg2b (ENSDLAG00005017097)	ENSDLAG00005017086
European seabass	MODERN SPECIES	20	ENSDLAG00005021662	ENSDLAG00005021531	ENSDLAG00005021518	rdh8b (ENSDLAG00005021516)	ENSDLAG00005020790	olfm2b (ENSDLAG00005020774)	ENSDLAG00005027198	ENSDLAG00005028231	ENSDLAG00005003231	TRIP10 (ENSDLAG00005019668)	ENSDLAG00005019634	VAV1 (ENSDLAG00005018480)	ENSDLAG00005018446	ENSDLAG00005018433	ENSDLAG00005017457 #22	ENSDLAG00005018416 #22	ENSDLAG00005005172 #22	ENSDLAG00005005392 #22	ENSDLAG00005018387	ENSDLAG00005018358	ENSDLAG00005018351	zgc:112980 (ENSDLAG00005018308)	smcr8b (ENSDLAG00005018266)	mief2 (ENSDLAG00005018251)	alkbh5 (ENSDLAG00005018238)	ENSDLAG00005032865	ENSDLAG00005017302	ENSDLAG00005033020	abcg2b (ENSDLAG00005017097)	ENSDLAG00005017086	ENSDLAG00005016847
Perciformes	ANCESTRAL SPECIES	2	ENSGT00940000163566.a.a	ENSGT00940000157752	ENSGT00390000014423	ENSGT00940000155412.a.a.b	ENSGT00940000154535.B	ENSGT00940000159148.b	ENSGT00940000154615.i.a.b	ENSGT00950000183047.c.a.b	ENSGT00940000154130.a.a.a	ENSGT00940000159125	ENSGT00390000001945	ENSGT00640000091578	ENSGT01100000263598	ENSGT00950000182960.a.a.a.a	ENSGT00990000204057	ENSGT00530000063725.p.f #22	ENSGT00950000182960.a.a.b.e.b	ENSGT00390000015109	ENSGT00940000153974.A	ENSGT00400000022459	ENSGT00390000010052.b	ENSGT00390000013127.b	ENSGT00390000009298	ENSGT00930000151032.A.c.a	ENSGT00940000156222.a.b	ENSGT00390000002886.a.a.a	ENSGT00940000162658.b	ENSGT00940000173775	ENSGT00940000165949	ENSGT00390000002164.b	ENSGT00940000155366.b.b.d.a
Perciformes_a	ANCESTRAL SPECIES		ENSGT00940000163679	ENSGT00950000183157.a.a.b.d	ENSGT00940000163566.a.a	ENSGT00940000157752	ENSGT00390000014423	ENSGT00940000155412.a.a.b	ENSGT00940000154535.B	ENSGT00940000159148.b	ENSGT00940000154615.i.a.b	ENSGT00950000183047.c.a.b	ENSGT00940000154130.a.a.a	ENSGT00940000159125	ENSGT00390000001945	ENSGT00640000091578	ENSGT00990000204057	ENSGT00530000063725.p.f #22	ENSGT00950000182960.a.a.b.e.b	ENSGT01100000263598	ENSGT00950000182960.a.a.a.a	ENSGT00390000015109	ENSGT00940000153974.A	ENSGT00400000022459	ENSGT00390000010052.b	ENSGT00390000013127.b	ENSGT00390000009298	ENSGT00930000151032.A.c.a	ENSGT00940000156222.a.b	ENSGT00390000002886.a.a.a	ENSGT00940000165949	ENSGT00390000002164.b	ENSGT00940000155366.b.b.d.a
Pike perch	MODERN SPECIES	8	ttyh3b (ENSSLUG00000001009)	ENSSLUG00000001019	ENSSLUG00000001024	rasd3 (ENSSLUG00000001029)	PLK1 (ENSSLUG00000001032)	rdh8b (ENSSLUG00000001043)	col5a3b (ENSSLUG00000001076)	olfm2b (ENSSLUG00000001121)	ENSSLUG00000001126	ENSSLUG00000001129	TRIP10 (ENSSLUG00000001155)	ENSSLUG00000001190	VAV1 (ENSSLUG00000001236)	UBL5 (ENSSLUG00000001317)	pin1 (ENSSLUG00000001321)	ENSSLUG00000001326 #22	ENSSLUG00000001329	fbxl18 (ENSSLUG00000001338)	PTCD1 (ENSSLUG00000001340)	zgc:112980 (ENSSLUG00000001343)	smcr8b (ENSSLUG00000001345)	mief2 (ENSSLUG00000001349)	alkbh5 (ENSSLUG00000001351)	ENSSLUG00000001354	ENSSLUG00000001376	hapstr1b (ENSSLUG00000001410)	abcg2c (ENSSLUG00000001414)	ENSSLUG00000001417	ENSSLUG00000001418	arpc1b (ENSSLUG00000001422)	MMD2 (ENSSLUG00000001470)
Channel bull blenny	MODERN SPECIES		rasd3 (ENSCGOG00000005520)	PLK1 (ENSCGOG00000005526)	ENSCGOG00000005711	rdh8b (ENSCGOG00000005719)	ENSCGOG00000005774	ENSCGOG00000005777	olfm2b (ENSCGOG00000005782)	ENSCGOG00000005785	ENSCGOG00000005793	TRIP10 (ENSCGOG00000005926)	ENSCGOG00000005950	VAV1 (ENSCGOG00000006018)	UBL5 (ENSCGOG00000009925)	pin1 (ENSCGOG00000009932)	ENSCGOG00000009938	ENSCGOG00000009962 #22	ndufb6 (ENSCGOG00000009974)	toporsa (ENSCGOG00000009987)	mtap (ENSCGOG00000009991)	ENSCGOG00000010013	ENSCGOG00000010014	TET2 (ENSCGOG00000010016)	ARHGEF38 (ENSCGOG00000010026)	ints12 (ENSCGOG00000010030)	gstcd (ENSCGOG00000010034)	npnta (ENSCGOG00000010047)	ENSCGOG00000010061	ENSCGOG00000010068	ENSCGOG00000010181	tbck (ENSCGOG00000010212)	aimp1a (ENSCGOG00000011329)
Percomorphaceae_D	ANCESTRAL SPECIES		ENSGT00940000163679	ENSGT00950000183157.a.a.b.d	ENSGT00940000163566.a.a	ENSGT00940000157752	ENSGT00390000014423	ENSGT00940000155412.a.a.b	ENSGT00940000154535.B	ENSGT00950000183249	ENSGT00940000159148.b	ENSGT00940000154615.i.a.b	ENSGT00950000183047.c.a.b	ENSGT00940000154130.a.a.a	ENSGT00940000159125	ENSGT00390000001945	ENSGT00640000091578	ENSGT00530000063725.p.f #22	ENSGT00530000063725.p.e.a #22	ENSGT00530000063725.p.e.b #22	ENSGT01100000263598	ENSGT00950000182960.a.a.b.e.b	ENSGT00390000015109	ENSGT00940000153974.A	ENSGT00400000022459	ENSGT00390000010052.b	ENSGT00390000013127.b	ENSGT00390000009298	ENSGT00930000151032.A.c.a	ENSGT00940000182552	ENSGT00940000155335.s.a	ENSGT00940000156222.a.b	ENSGT00390000002886.a.a.a
Carangaria	ANCESTRAL SPECIES		ENSGT00940000163679	ENSGT00950000183157.a.a.b.d	ENSGT00940000163566.a.a	ENSGT00940000157752	ENSGT00390000014423	ENSGT00940000155412.a.a.b	ENSGT00940000154535.B	ENSGT00950000183249	ENSGT00940000159148.b	ENSGT00940000154615.i.a.b	ENSGT00950000183047.c.a.b	ENSGT00940000154130.a.a.a	ENSGT00940000159125	ENSGT00390000001945	ENSGT00640000091578	ENSGT00530000063725.p.f #22	ENSGT00530000063725.p.e.a #22	ENSGT00530000063725.p.e.b #22	ENSGT01100000263598	ENSGT00950000182960.a.a.b.e.b	ENSGT00390000015109	ENSGT00940000153974.A	ENSGT00400000022459	ENSGT00390000010052.b	ENSGT00390000013127.b	ENSGT00390000009298	ENSGT00930000151032.A.c.a	ENSGT00940000182552	ENSGT00940000155335.s.a	ENSGT00940000156222.a.b	ENSGT00390000002886.a.a.a
Carangaria_A	ANCESTRAL SPECIES	14	ENSGT00950000183060.a.a.d.a	ENSGT00940000163679	ENSGT00950000183157.a.a.b.d	ENSGT00940000163566.a.a	ENSGT00940000157752	ENSGT00940000155412.a.a.b	ENSGT00940000154535.B	ENSGT00950000183249	ENSGT00940000159148.b	ENSGT00940000154615.i.a.b	ENSGT00950000183047.c.a.b	ENSGT00940000154130.a.a.a	ENSGT00940000159125	ENSGT00390000001945	ENSGT00640000091578	ENSGT00530000063725.p.f #22	ENSGT00530000063725.p.e.a #22	ENSGT00530000063725.p.e.b #22	ENSGT01100000263598	ENSGT00950000182960.a.a.b.e.b	ENSGT00390000015109	ENSGT00940000153974.A	ENSGT00400000022459	ENSGT00390000010052.b	ENSGT00390000013127.b	ENSGT00390000009298	ENSGT00930000151032.A.c.a	ENSGT00940000182552	ENSGT00940000156222.a.b	ENSGT00390000002886.a.a.a	ENSGT00940000165949
Seriola	ANCESTRAL SPECIES	18	ENSGT00950000183060.a.a.d.a	ENSGT00940000163679	ENSGT00950000183157.a.a.b.d	ENSGT00940000163566.a.a	ENSGT00940000157752	ENSGT00940000155412.a.a.b	ENSGT00940000154535.B	ENSGT00950000183249	ENSGT00940000159148.b	ENSGT00940000154615.i.a.b	ENSGT00950000183047.c.a.b	ENSGT00940000154130.a.a.a	ENSGT00940000159125	ENSGT00390000001945	ENSGT00640000091578	ENSGT00530000063725.p.f #22	ENSGT00530000063725.p.e.a #22	ENSGT00530000063725.p.e.b #22	ENSGT01100000263598	ENSGT00950000182960.a.a.b.e.b	ENSGT00390000015109	ENSGT00940000153974.A	ENSGT00400000022459	ENSGT00390000010052.b	ENSGT00390000013127.b	ENSGT00390000009298	ENSGT00930000151032.A.c.a	ENSGT00940000182552	ENSGT00940000156222.a.b	ENSGT00390000002886.a.a.a	ENSGT00940000165949
Yellowtail amberjack	MODERN SPECIES	3195	ttyh3b (ENSSLDG00000016344)	ENSSLDG00000016310	ENSSLDG00000016280	rasd3 (ENSSLDG00000016267)	PLK1 (ENSSLDG00000016237)	rdh8b (ENSSLDG00000016188)	ENSSLDG00000016153	ENSSLDG00000016143	OLFM2 (ENSSLDG00000016097)	MFAP4 (ENSSLDG00000016068)	TRIP10 (ENSSLDG00000015981)	ENSSLDG00000015879	VAV1 (ENSSLDG00000015815)	UBL5 (ENSSLDG00000015781)	pin1 (ENSSLDG00000015758)	ENSSLDG00000015653 #22	ENSSLDG00000014616 #22	ENSSLDG00000014378 #22	ENSSLDG00000014362	ENSSLDG00000014332	fbxl18 (ENSSLDG00000014309)	PTCD1 (ENSSLDG00000014261)	zgc:112980 (ENSSLDG00000014217)	smcr8b (ENSSLDG00000014199)	mgat4b (ENSSLDG00000014173)	canx (ENSSLDG00000014150)	MAML1 (ENSSLDG00000014125)	LTC4S (ENSSLDG00000014108)	emx3 (ENSSLDG00000014095)	b4galt7 (ENSSLDG00000014080)	ENSSLDG00000014068
Barramundi perch	MODERN SPECIES	399													ENSLCAG00010007565	UBL5 (ENSLCAG00010007558)	pin1 (ENSLCAG00010007549)	ENSLCAG00010007539 #22	ENSLCAG00010007529 #22	ENSLCAG00010007517	ENSLCAG00010007316	fbxl18 (ENSLCAG00010007244)	PTCD1 (ENSLCAG00010007233)	zgc:112980 (ENSLCAG00010007222)	smcr8b (ENSLCAG00010007212)	mief2 (ENSLCAG00010007204)	alkbh5 (ENSLCAG00010007194)	ENSLCAG00010007181	ENSLCAG00010007173	ENSLCAG00010007104	hapstr1b (ENSLCAG00010007072)	abcg2c (ENSLCAG00010007066)	ENSLCAG00010007061
Ovalentaria	DUPLICATION
Ovalentaria	DUPLICATION
Ovalentaria	ANCESTRAL SPECIES																	ENSGT00530000063725.p.f.c.a #22
Ovalentaria_B	ANCESTRAL SPECIES																	ENSGT00530000063725.p.f.c.a #22
Cichlidae	ANCESTRAL SPECIES																	ENSGT00530000063725.p.f.c.a #22
Pseudocrenilabrinae	ANCESTRAL SPECIES																	ENSGT00530000063725.p.f.c.a #22
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	5	ENSGT00940000156222.a.b	ENSGT00940000155335.s.a	ENSGT00990000204818.a	ENSGT00930000151032.A.c.a	ENSGT00390000009298	ENSGT00390000013127.b	ENSGT00390000010052.b	ENSGT00400000022459	ENSGT00940000153974.A	ENSGT00390000015109	ENSGT00950000182960.a.a.b.e.b.a	ENSGT01100000263598	ENSGT00530000063725.p.f.c.b #22	ENSGT00950000182960.a.a.a.b.c	ENSGT00950000182960.a.a.a.a	ENSGT00530000063725.p.f.c.a #22	ENSGT00530000063725.p.f.d.h #22	ENSGT00640000091578	ENSGT00390000001945	ENSGT00940000159125	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a.b	ENSGT00940000154615.i.a.b	ENSGT00940000159148.b	ENSGT00940000154535.B	ENSGT00940000155412.a.a.b	ENSGT00390000014423	ENSGT00940000157752	ENSGT00940000163566.a.a	ENSGT00950000183157.a.a.b.d	ENSGT00940000163679
Haplochromini	ANCESTRAL SPECIES	3	ENSGT00940000156222.a.b	ENSGT00940000155335.s.a	ENSGT00990000204818.a	ENSGT00930000151032.A.c.a	ENSGT00390000009298	ENSGT00390000013127.b	ENSGT00390000010052.b	ENSGT00400000022459	ENSGT00940000153974.A	ENSGT00390000015109	ENSGT00950000182960.a.a.b.e.b.a	ENSGT01100000263598	ENSGT00530000063725.p.f.c.b #22	ENSGT00950000182960.a.a.a.b.c	ENSGT00950000182960.a.a.a.a	ENSGT00530000063725.p.f.c.a #22	ENSGT00530000063725.p.f.d.h #22	ENSGT00640000091578	ENSGT00390000001945	ENSGT00940000159125	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a.b	ENSGT00940000154615.i.a.b	ENSGT00940000159148.b	ENSGT00940000154535.B	ENSGT00940000155412.a.a.b	ENSGT00390000014423	ENSGT00940000157752	ENSGT00940000163566.a.a	ENSGT00950000183157.a.a.b.d	ENSGT00940000163679
Haplochromini_A	ANCESTRAL SPECIES	2	ENSGT00940000155335.s.a	ENSGT00990000204818.a	ENSGT00930000151032.A.c.a	ENSGT00390000009298	ENSGT00390000013127.b	ENSGT00390000010052.b	ENSGT00400000022459	ENSGT00940000153974.A	ENSGT00390000015109	ENSGT00950000182960.a.a.b.e.b.a	ENSGT01100000263598	ENSGT00530000063725.p.f.c.b #22	ENSGT00950000182960.a.a.a.b.c	ENSGT00950000182960.a.a.a.a	ENSGT00530000063725.p.f.d.g.b #22	ENSGT00530000063725.p.f.c.a #22	ENSGT00530000063725.p.f.d.h #22	ENSGT00640000091578	ENSGT00390000001945	ENSGT00940000159125	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a.b	ENSGT00940000154615.i.a.b	ENSGT00940000159148.b	ENSGT00940000154535.B	ENSGT00940000155412.a.a.b	ENSGT00390000014423	ENSGT00940000157752	ENSGT00940000163566.a.a	ENSGT00950000183157.a.a.b.d	ENSGT00940000163679
P. nyererei	MODERN SPECIES	440															ENSPNYG00000005896 #22	ENSPNYG00000006073 #22	ENSPNYG00000006105 #22	pin1 (ENSPNYG00000006121)	UBL5 (ENSPNYG00000006140)	VAV1 (ENSPNYG00000006175)	ENSPNYG00000006241	TRIP10 (ENSPNYG00000006284)	MFAP4 (ENSPNYG00000006305)	olfm2b (ENSPNYG00000006329)	col5a3b (ENSPNYG00000006421)	rdh8b (ENSPNYG00000006565)	PLK1 (ENSPNYG00000006585)	rasd3 (ENSPNYG00000006613)	ENSPNYG00000006618	ttyh3b (ENSPNYG00000006636)	ENSPNYG00000006687
Haplochromini_B	ANCESTRAL SPECIES	8	ENSGT00990000204818.a	ENSGT00930000151032.A.c.a	ENSGT00390000009298	ENSGT00390000013127.b	ENSGT00390000010052.b	ENSGT00400000022459	ENSGT00940000153974.A	ENSGT00390000015109	ENSGT00950000182960.a.a.b.e.b.a	ENSGT01100000263598	ENSGT00530000063725.p.f.c.b #22	ENSGT00950000182960.a.a.a.b.c	ENSGT00940000154664.h.n.c.e.d.a.b	ENSGT00950000182996.b.b.c.b.b.a.b.c	ENSGT00530000063725.p.f.d.g.b #22	ENSGT00530000063725.p.f.c.a #22	ENSGT00530000063725.p.f.d.h #22	ENSGT00640000091578	ENSGT00390000001945	ENSGT00940000159125	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a.b	ENSGT00940000154615.i.a.b	ENSGT00940000159148.b	ENSGT00940000154535.B	ENSGT00940000155412.a.a.b	ENSGT00390000014423	ENSGT00940000157752	ENSGT00940000163566.a.a	ENSGT00950000183157.a.a.b.d	ENSGT00940000163679
Eastern happy	MODERN SPECIES	18	zgc:112980 (ENSACLG00000002791)	PTCD1 (ENSACLG00000002824)	fbxl18 (ENSACLG00000002840)	ENSACLG00000002849	ENSACLG00000002863	ENSACLG00000002873 #22	ACTG1 (ENSACLG00000002912)	ENSACLG00000002975	KLHL10 (ENSACLG00000002998)	ENSACLG00000003013	ENSACLG00000003066	ENSACLG00000003106	ENSACLG00000003149	ENSACLG00000003165	ENSACLG00000003171	ENSACLG00000003185 #22	ENSACLG00000003192	ENSACLG00000003207 #22	pin1 (ENSACLG00000003231)	UBL5 (ENSACLG00000003272)	VAV1 (ENSACLG00000003292)	ENSACLG00000003350	ENSACLG00000003460	TRIP10 (ENSACLG00000003466)	MFAP4 (ENSACLG00000003486)	olfm2b (ENSACLG00000003499)	col5a3b (ENSACLG00000003865)	ENSACLG00000004154	rdh8b (ENSACLG00000004166)	ENSACLG00000004183	PLK1 (ENSACLG00000004225)
Zebra mbuna	MODERN SPECIES	1109	MYO15A (ENSMZEG00005012550)	alkbh5 (ENSMZEG00005012673)	mief2 (ENSMZEG00005012679)	smcr8b (ENSMZEG00005012693)	zgc:112980 (ENSMZEG00005012703)	PTCD1 (ENSMZEG00005012722)	ACTB (ENSMZEG00005012760)	ENSMZEG00005012791	ENSMZEG00005012824	ENSMZEG00005012869 #22	ENSMZEG00005012969	KLHL10 (ENSMZEG00005013011)	ENSMZEG00005013027	ENSMZEG00005013062	ENSMZEG00005013075 #22	ENSMZEG00005013139 #22	ENSMZEG00005013149 #22	pin1 (ENSMZEG00005013158)	pin1 (ENSMZEG00005013165)	UBL5 (ENSMZEG00005013172)	VAV1 (ENSMZEG00005013190)	ENSMZEG00005013242	TRIP10 (ENSMZEG00005013280)	MFAP4 (ENSMZEG00005013304)	OLFM2 (ENSMZEG00005013310)	ENSMZEG00005013366	rdh8b (ENSMZEG00005013446)	ENSMZEG00005013457	PLK1 (ENSMZEG00005013471)	rasd3 (ENSMZEG00005013489)	ENSMZEG00005013492
Lyretail cichlid	MODERN SPECIES	410																ENSNBRG00000005510 #22	ENSNBRG00000005640 #22	pin1 (ENSNBRG00000005838)	UBL5 (ENSNBRG00000005850)	VAV1 (ENSNBRG00000005871)	ENSNBRG00000005943	TRIP10 (ENSNBRG00000005996)	MFAP4 (ENSNBRG00000006008)	olfm2b (ENSNBRG00000006028)	col5a3b (ENSNBRG00000006098)	rdh8b (ENSNBRG00000006246)	PLK1 (ENSNBRG00000006324)	ENSNBRG00000006351	ttyh3b (ENSNBRG00000006367)	ENSNBRG00000006422	ENSNBRG00000006510 ##29
Midas cichlid	MODERN SPECIES	1004															ENSACIG00000018253 #22	ENSACIG00000017987 #22	ENSACIG00000017957	ENSACIG00000017943	fbxl18 (ENSACIG00000017899)	PTCD1 (ENSACIG00000017861)	smcr8b (ENSACIG00000017849)	mief2 (ENSACIG00000017838)	alkbh5 (ENSACIG00000017828)	ENSACIG00000017815	ENSACIG00000017793	hapstr1b (ENSACIG00000017778)	abcg2b (ENSACIG00000017725)	ENSACIG00000017716	ENSACIG00000017707	arpc1a (ENSACIG00000017686)	arpc1b (ENSACIG00000017664)
Atherinomorphae	ANCESTRAL SPECIES																	ENSGT00530000063725.p.f.c.a #22
Cyprinodontiformes	ANCESTRAL SPECIES																	ENSGT00530000063725.p.f.c.a #22
Cyprinodontoidei	ANCESTRAL SPECIES																	ENSGT00530000063725.p.f.c.a #22
Poeciliinae	ANCESTRAL SPECIES																	ENSGT00530000063725.p.f.c.a #22
Platyfish	MODERN SPECIES	15	tomm5 (ENSXMAG00000021590)	ENSXMAG00000008433	ENSXMAG00000019482	tlr1 (ENSXMAG00000008414)	ints10 (ENSXMAG00000008415)	KLB (ENSXMAG00000008401)	ube2ka (ENSXMAG00000028810)	CHRNA9 (ENSXMAG00000008384)	ENSXMAG00000008375	ENSXMAG00000027048	ENSXMAG00000029322	ENSXMAG00000013617	bicc2 (ENSXMAG00000013618)	SPOCK1 (ENSXMAG00000008356)	ENSXMAG00000008355	ENSXMAG00000004952 #22	etf1a (ENSXMAG00000004958)	fbxw11a (ENSXMAG00000028721)	fgf18a (ENSXMAG00000008345)	ENSXMAG00000008344	ENSXMAG00000024673	ENSXMAG00000022600	ENSXMAG00000025527	ENSXMAG00000026086	ENSXMAG00000029875	pcdh2aa1 (ENSXMAG00000021145)	ENSXMAG00000008339	ENSXMAG00000021521	ENSXMAG00000027616	ENSXMAG00000026701	ENSXMAG00000021083
Ovalentaria	ANCESTRAL SPECIES																	ENSGT00530000063725.p.f.c.b #22
Ovalentaria_B	ANCESTRAL SPECIES	100																ENSGT00530000063725.p.f.c.b #22	ENSGT01100000263598	ENSGT00950000182960.a.a.a.a	ENSGT00950000182960.a.a.a.b
Cichlidae	ANCESTRAL SPECIES	3	ENSGT00950000183060.a.a.d.a	ENSGT00940000163679	ENSGT00950000183157.a.a.b.d	ENSGT00940000163566.a.a	ENSGT00940000157752	ENSGT00390000014423	ENSGT00940000155412.a.a.b	ENSGT00940000154535.B	ENSGT00940000159148.b	ENSGT00940000154615.i.a.b	ENSGT00950000183047.c.a.b	ENSGT00940000154130.a.a.a	ENSGT00940000159125	ENSGT00390000001945	ENSGT00640000091578	ENSGT00530000063725.p.f.c.b #22	ENSGT01100000263598	ENSGT00950000182960.a.a.b.e.b	ENSGT00390000015109	ENSGT00940000153974.A	ENSGT00400000022459	ENSGT00390000010052.b	ENSGT00390000013127.b	ENSGT00390000009298	ENSGT00940000155335.s.a	ENSGT00940000156222.a.b	ENSGT00390000002886.a.a.a	ENSGT00940000165949	ENSGT00940000173775	ENSGT00940000162658.b	ENSGT00390000002164.b
Pseudocrenilabrinae	ANCESTRAL SPECIES	3	ENSGT00940000163566.a.a	ENSGT00940000157752	ENSGT00390000014423	ENSGT00940000155412.a.a.b	ENSGT00940000154535.B	ENSGT00940000159148.b	ENSGT00940000154615.i.a.b	ENSGT00950000183047.c.a.b	ENSGT00940000154130.a.a.a	ENSGT00940000159125	ENSGT00390000001945	ENSGT00640000091578	ENSGT00530000063725.p.f.d #22	ENSGT00950000182960.a.a.a.a	ENSGT00950000182960.a.a.a.b	ENSGT00530000063725.p.f.c.b #22	ENSGT01100000263598	ENSGT00950000182960.a.a.b.e.b	ENSGT00390000015109	ENSGT00940000153974.A	ENSGT00400000022459	ENSGT00390000010052.b	ENSGT00390000013127.b	ENSGT00390000009298	ENSGT00940000155335.s.a	ENSGT00940000156222.a.b	ENSGT00990000204818.a	ENSGT00390000002886.a.a.a	ENSGT00940000165949	ENSGT00940000173775	ENSGT00940000177139
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	5	ENSGT00940000157752	ENSGT00390000014423	ENSGT00940000155412.a.a.b	ENSGT00940000154535.B	ENSGT00940000159148.b	ENSGT00940000154615.i.a.b	ENSGT00950000183047.c.a.b	ENSGT00940000154130.a.a.a	ENSGT00940000159125	ENSGT00390000001945	ENSGT00640000091578	ENSGT00530000063725.p.f.d.h #22	ENSGT00530000063725.p.f.c.a #22	ENSGT00950000182960.a.a.a.a	ENSGT00950000182960.a.a.a.b.c	ENSGT00530000063725.p.f.c.b #22	ENSGT01100000263598	ENSGT00950000182960.a.a.b.e.b.a	ENSGT00390000015109	ENSGT00940000153974.A	ENSGT00400000022459	ENSGT00390000010052.b	ENSGT00390000013127.b	ENSGT00390000009298	ENSGT00930000151032.A.c.a	ENSGT00990000204818.a	ENSGT00940000155335.s.a	ENSGT00940000156222.a.b	ENSGT00390000002886.a.a.a	ENSGT00940000165949	ENSGT00940000173775
Haplochromini	ANCESTRAL SPECIES	3	ENSGT00940000157752	ENSGT00390000014423	ENSGT00940000155412.a.a.b	ENSGT00940000154535.B	ENSGT00940000159148.b	ENSGT00940000154615.i.a.b	ENSGT00950000183047.c.a.b	ENSGT00940000154130.a.a.a	ENSGT00940000159125	ENSGT00390000001945	ENSGT00640000091578	ENSGT00530000063725.p.f.d.h #22	ENSGT00530000063725.p.f.c.a #22	ENSGT00950000182960.a.a.a.a	ENSGT00950000182960.a.a.a.b.c	ENSGT00530000063725.p.f.c.b #22	ENSGT01100000263598	ENSGT00950000182960.a.a.b.e.b.a	ENSGT00390000015109	ENSGT00940000153974.A	ENSGT00400000022459	ENSGT00390000010052.b	ENSGT00390000013127.b	ENSGT00390000009298	ENSGT00930000151032.A.c.a	ENSGT00990000204818.a	ENSGT00940000155335.s.a	ENSGT00940000156222.a.b	ENSGT00390000002886.a.a.a	ENSGT00940000165949	ENSGT00940000162658.b
Burton s mouthbrooder	MODERN SPECIES	374																ENSHBUG00000018220 #22	ENSHBUG00000018238	actb1 (ENSHBUG00000018251)	fbxl18 (ENSHBUG00000018265)	PTCD1 (ENSHBUG00000018275)	ENSHBUG00000018284	smcr8b (ENSHBUG00000018288)	mief2 (ENSHBUG00000018314)	alkbh5 (ENSHBUG00000018324)	ENSHBUG00000018462	ENSHBUG00000018585	hapstr1b (ENSHBUG00000018610)	abcg2c (ENSHBUG00000018618)	ENSHBUG00000018633	arpc1a (ENSHBUG00000018663)	arpc1b (ENSHBUG00000018691)
Haplochromini_A	ANCESTRAL SPECIES	2	ENSGT00390000014423	ENSGT00940000155412.a.a.b	ENSGT00940000154535.B	ENSGT00940000159148.b	ENSGT00940000154615.i.a.b	ENSGT00950000183047.c.a.b	ENSGT00940000154130.a.a.a	ENSGT00940000159125	ENSGT00390000001945	ENSGT00640000091578	ENSGT00530000063725.p.f.d.h #22	ENSGT00530000063725.p.f.c.a #22	ENSGT00530000063725.p.f.d.g.b #22	ENSGT00950000182960.a.a.a.a	ENSGT00950000182960.a.a.a.b.c	ENSGT00530000063725.p.f.c.b #22	ENSGT01100000263598	ENSGT00950000182960.a.a.b.e.b.a	ENSGT00390000015109	ENSGT00940000153974.A	ENSGT00400000022459	ENSGT00390000010052.b	ENSGT00390000013127.b	ENSGT00390000009298	ENSGT00930000151032.A.c.a	ENSGT00990000204818.a	ENSGT00940000155335.s.a	ENSGT00940000156222.a.b	ENSGT00390000002886.a.a.a	ENSGT00940000162658.b	ENSGT00390000002164.b
P. nyererei	MODERN SPECIES	560														ENSPNYG00000019869	ACTG1 (ENSPNYG00000019880)	ENSPNYG00000019906 #22	ENSPNYG00000019919	ENSPNYG00000019942	fbxl18 (ENSPNYG00000019957)	PTCD1 (ENSPNYG00000019993)	ENSPNYG00000020019	smcr8b (ENSPNYG00000020109)	mief2 (ENSPNYG00000020121)	alkbh5 (ENSPNYG00000020156)	MYO15A (ENSPNYG00000020186)	ENSPNYG00000020316	ENSPNYG00000020364	hapstr1b (ENSPNYG00000020374)	abcg2c (ENSPNYG00000020405)	ENSPNYG00000020481	arpc1a (ENSPNYG00000020492)
Haplochromini_B	ANCESTRAL SPECIES	8	ENSGT00940000155412.a.a.b	ENSGT00940000154535.B	ENSGT00940000159148.b	ENSGT00940000154615.i.a.b	ENSGT00950000183047.c.a.b	ENSGT00940000154130.a.a.a	ENSGT00940000159125	ENSGT00390000001945	ENSGT00640000091578	ENSGT00530000063725.p.f.d.h #22	ENSGT00530000063725.p.f.c.a #22	ENSGT00530000063725.p.f.d.g.b #22	ENSGT00950000182996.b.b.c.b.b.a.b.c	ENSGT00940000154664.h.n.c.e.d.a.b	ENSGT00950000182960.a.a.a.b.c	ENSGT00530000063725.p.f.c.b #22	ENSGT01100000263598	ENSGT00950000182960.a.a.b.e.b.a	ENSGT00390000015109	ENSGT00940000153974.A	ENSGT00400000022459	ENSGT00390000010052.b	ENSGT00390000013127.b	ENSGT00390000009298	ENSGT00930000151032.A.c.a	ENSGT00990000204818.a	ENSGT00940000156222.a.b	ENSGT00390000002886.a.a.a	ENSGT00940000162658.b	ENSGT00390000002164.b	ENSGT00940000155366.b.b.d.a
Eastern happy	MODERN SPECIES	18	VAV1 (ENSACLG00000003292)	UBL5 (ENSACLG00000003272)	pin1 (ENSACLG00000003231)	ENSACLG00000003207 #22	ENSACLG00000003192	ENSACLG00000003185 #22	ENSACLG00000003171	ENSACLG00000003165	ENSACLG00000003149	ENSACLG00000003106	ENSACLG00000003066	ENSACLG00000003013	KLHL10 (ENSACLG00000002998)	ENSACLG00000002975	ACTG1 (ENSACLG00000002912)	ENSACLG00000002873 #22	ENSACLG00000002863	ENSACLG00000002849	fbxl18 (ENSACLG00000002840)	PTCD1 (ENSACLG00000002824)	zgc:112980 (ENSACLG00000002791)	smcr8b (ENSACLG00000002784)	mief2 (ENSACLG00000002732)	alkbh5 (ENSACLG00000002713)	ENSACLG00000002632	ENSACLG00000002598	ENSACLG00000002548	hapstr1b (ENSACLG00000002543)	abcg2b (ENSACLG00000002540)	ENSACLG00000002538	ENSACLG00000002517
Zebra mbuna	MODERN SPECIES	1109	OLFM2 (ENSMZEG00005013310)	MFAP4 (ENSMZEG00005013304)	TRIP10 (ENSMZEG00005013280)	ENSMZEG00005013242	VAV1 (ENSMZEG00005013190)	UBL5 (ENSMZEG00005013172)	pin1 (ENSMZEG00005013165)	pin1 (ENSMZEG00005013158)	ENSMZEG00005013149 #22	ENSMZEG00005013139 #22	ENSMZEG00005013075 #22	ENSMZEG00005013062	ENSMZEG00005013027	KLHL10 (ENSMZEG00005013011)	ENSMZEG00005012969	ENSMZEG00005012869 #22	ENSMZEG00005012824	ENSMZEG00005012791	ACTB (ENSMZEG00005012760)	PTCD1 (ENSMZEG00005012722)	zgc:112980 (ENSMZEG00005012703)	smcr8b (ENSMZEG00005012693)	mief2 (ENSMZEG00005012679)	alkbh5 (ENSMZEG00005012673)	MYO15A (ENSMZEG00005012550)	ENSMZEG00005012502	ENSMZEG00005012457	hapstr1b (ENSMZEG00005012443)	abcg2b (ENSMZEG00005012411)	ENSMZEG00005012398	ENSMZEG00005012389
Nile tilapia	DUPLICATION
Nile tilapia	MODERN SPECIES	18	MFAP4 (ENSONIG00000000210)	TRIP10 (ENSONIG00000000213)	ENSONIG00000000220	VAV1 (ENSONIG00000000226)	UBL5 (ENSONIG00000000251)	pin1 (ENSONIG00000027273)	ENSONIG00000000258 #22	ENSONIG00000036434 #22	ENSONIG00000040827	ENSONIG00000031994	ENSONIG00000033301	ENSONIG00000031015	ACTB (ENSONIG00000003148)	ACTG1 (ENSONIG00000033329)	ENSONIG00000036066	ENSONIG00000003153 #22	ENSONIG00000025166	fbxl18 (ENSONIG00000003165)	PTCD1 (ENSONIG00000003168)	zgc:112980 (ENSONIG00000003172)	ENSONIG00000032900	smcr8b (ENSONIG00000003176)	mief2 (ENSONIG00000003179)	alkbh5 (ENSONIG00000003181)	MYO15A (ENSONIG00000003182)	ENSONIG00000003190	ENSONIG00000030100	hapstr1b (ENSONIG00000003202)	abcg2b (ENSONIG00000003204)	ENSONIG00000039403	ENSONIG00000039837
Nile tilapia	MODERN SPECIES	246														ENSONIG00000014656	ENSONIG00000037416	ENSONIG00000032492 #22	ENSONIG00000038720	ENSONIG00000000131	ENSONIG00000000133
Midas cichlid	MODERN SPECIES	1004																ENSACIG00000018253 #22	ENSACIG00000017987 #22	ENSACIG00000017957	ENSACIG00000017943	fbxl18 (ENSACIG00000017899)	PTCD1 (ENSACIG00000017861)	smcr8b (ENSACIG00000017849)	mief2 (ENSACIG00000017838)	alkbh5 (ENSACIG00000017828)	ENSACIG00000017815	ENSACIG00000017793	hapstr1b (ENSACIG00000017778)	abcg2b (ENSACIG00000017725)	ENSACIG00000017716	ENSACIG00000017707	arpc1a (ENSACIG00000017686)
Ovalentaria	ANCESTRAL SPECIES		ENSGT00940000157752	ENSGT00390000014423	ENSGT00940000155412.a.a.b	ENSGT00940000154535.B	ENSGT00940000178300	ENSGT00950000183249	ENSGT00940000159148.b	ENSGT01060000248589.A.d	ENSGT00940000154615.i.a.b	ENSGT00950000183047.c.a.b	ENSGT00940000154130.a.a.a	ENSGT00940000159125	ENSGT00390000001945	ENSGT00640000091578	ENSGT00990000204057	ENSGT00530000063725.p.f.d #22	ENSGT01100000263598	ENSGT00950000182960.a.a.b.e.b	ENSGT00950000182960.a.a.a.a	ENSGT00950000182960.a.a.a.b	ENSGT00950000182960.a.a.b.f	ENSGT00390000015109	ENSGT00940000153974.A	ENSGT00400000022459	ENSGT00390000010052.b	ENSGT00390000013127.b	ENSGT00390000009298	ENSGT00930000151032.A.c.a	ENSGT00940000155335.s.a	ENSGT00940000156222.a.b	ENSGT00390000002886.a.a.a
Atherinomorphae	ANCESTRAL SPECIES	20	ENSGT00940000163679	ENSGT00950000183157.a.a.b.d	ENSGT00940000157752	ENSGT00390000014423	ENSGT00940000155412.a.a.b	ENSGT00940000154535.B	ENSGT00940000178300	ENSGT00950000183249	ENSGT00940000159148.b	ENSGT00940000154615.i.a.b	ENSGT00950000183047.c.a.b	ENSGT00940000154130.a.a.a	ENSGT00940000159125	ENSGT00390000001945	ENSGT00640000091578	ENSGT00530000063725.p.f.d #22	ENSGT01100000263598	ENSGT00950000182960.a.a.b.e.b	ENSGT00390000015109	ENSGT00940000153974.A	ENSGT00390000010052.b	ENSGT00400000022459	ENSGT00390000013127.b	ENSGT00390000009298	ENSGT00930000151032.A.c.a	ENSGT00940000155335.s.a	ENSGT00940000156222.a.b	ENSGT00390000002886.a.a.a	ENSGT00940000165949	ENSGT00940000173775	ENSGT00390000002164.b
Oryzias	ANCESTRAL SPECIES	15	ENSGT00950000183060.a.a.d.a	ENSGT00940000163679	ENSGT00950000183157.a.a.b.d	ENSGT00940000157752	ENSGT00390000014423	ENSGT00940000155412.a.a.b	ENSGT00940000154535.B	ENSGT00950000183249	ENSGT00940000159148.b	ENSGT00940000154615.i.a.b	ENSGT00950000183047.c.a.b	ENSGT00940000154130.a.a.a	ENSGT00940000159125	ENSGT00390000001945	ENSGT00640000091578	ENSGT00530000063725.p.f.d #22	ENSGT01100000263598	ENSGT00950000182960.a.a.b.e.b	ENSGT00390000015109	ENSGT00940000153974.A	ENSGT00390000010052.b	ENSGT00400000022459	ENSGT00390000013127.b	ENSGT00390000009298	ENSGT00930000151032.A.c.a	ENSGT00940000156222.a.b	ENSGT00390000002886.a.a.a	ENSGT00940000165949	ENSGT00390000002164.b	ENSGT00940000177139	ENSGT00950000183183.b.a
Oryzias_b	ANCESTRAL SPECIES	21	ENSGT00950000183060.a.a.d.a	ENSGT00940000163679	ENSGT00950000183157.a.a.b.d	ENSGT00940000157752	ENSGT00390000014423	ENSGT00940000155412.a.a.b	ENSGT00940000154535.B	ENSGT00950000183249	ENSGT00940000159148.b	ENSGT00940000154615.i.a.b	ENSGT00950000183047.c.a.b	ENSGT00940000154130.a.a.a	ENSGT00940000159125	ENSGT00390000001945	ENSGT00640000091578	ENSGT00530000063725.p.f.d #22	ENSGT01100000263598	ENSGT00950000182960.a.a.b.e.b	ENSGT00390000015109	ENSGT00940000153974.A	ENSGT00390000010052.b	ENSGT00400000022459	ENSGT00390000013127.b	ENSGT00390000009298	ENSGT00930000151032.A.c.a	ENSGT00940000155335.s.a	ENSGT00940000156222.a.b	ENSGT00390000002886.a.a.a	ENSGT00940000165949	ENSGT00390000002164.b	ENSGT00940000177139
Indian medaka	DUPLICATION
Indian medaka	DUPLICATION
Indian medaka	MODERN SPECIES	35	ENSOMEG00000020024	rdh8b (ENSOMEG00000020069)	ENSOMEG00000020094	ENSOMEG00000020104	OLFM2 (ENSOMEG00000020163)	MFAP4 (ENSOMEG00000020200)	ENSOMEG00000020213	TRIP10 (ENSOMEG00000020273)	ENSOMEG00000020299	ENSOMEG00000020324	ENSOMEG00000020340	ENSOMEG00000020356	UBL5 (ENSOMEG00000020396)	pin1 (ENSOMEG00000020434)	ENSOMEG00000020461 #22	ENSOMEG00000020478 #22	ENSOMEG00000020498 #22	ENSOMEG00000020552	actb1 (ENSOMEG00000020586)	fbxl18 (ENSOMEG00000020603)	PTCD1 (ENSOMEG00000020627)	ENSOMEG00000020666	ENSOMEG00000020754	mief2 (ENSOMEG00000020791)	alkbh5 (ENSOMEG00000020820)	MYO15A (ENSOMEG00000020933)	ENSOMEG00000021095	hapstr1b (ENSOMEG00000021142)	abcg2c (ENSOMEG00000021272)	ENSOMEG00000000565	ENSOMEG00000021316
Indian medaka	MODERN SPECIES	35	rdh8b (ENSOMEG00000020069)	ENSOMEG00000020094	ENSOMEG00000020104	OLFM2 (ENSOMEG00000020163)	MFAP4 (ENSOMEG00000020200)	ENSOMEG00000020213	TRIP10 (ENSOMEG00000020273)	ENSOMEG00000020299	ENSOMEG00000020324	ENSOMEG00000020340	ENSOMEG00000020356	UBL5 (ENSOMEG00000020396)	pin1 (ENSOMEG00000020434)	ENSOMEG00000020461 #22	ENSOMEG00000020478 #22	ENSOMEG00000020498 #22	ENSOMEG00000020552	actb1 (ENSOMEG00000020586)	fbxl18 (ENSOMEG00000020603)	PTCD1 (ENSOMEG00000020627)	ENSOMEG00000020666	ENSOMEG00000020754	mief2 (ENSOMEG00000020791)	alkbh5 (ENSOMEG00000020820)	MYO15A (ENSOMEG00000020933)	ENSOMEG00000021095	hapstr1b (ENSOMEG00000021142)	abcg2c (ENSOMEG00000021272)	ENSOMEG00000000565	ENSOMEG00000021316	arpc1a (ENSOMEG00000021367)
Indian medaka	MODERN SPECIES	35	PLK1 (ENSOMEG00000019980)	ENSOMEG00000020024	rdh8b (ENSOMEG00000020069)	ENSOMEG00000020094	ENSOMEG00000020104	OLFM2 (ENSOMEG00000020163)	MFAP4 (ENSOMEG00000020200)	ENSOMEG00000020213	TRIP10 (ENSOMEG00000020273)	ENSOMEG00000020299	ENSOMEG00000020324	ENSOMEG00000020340	ENSOMEG00000020356	UBL5 (ENSOMEG00000020396)	pin1 (ENSOMEG00000020434)	ENSOMEG00000020461 #22	ENSOMEG00000020478 #22	ENSOMEG00000020498 #22	ENSOMEG00000020552	actb1 (ENSOMEG00000020586)	fbxl18 (ENSOMEG00000020603)	PTCD1 (ENSOMEG00000020627)	ENSOMEG00000020666	ENSOMEG00000020754	mief2 (ENSOMEG00000020791)	alkbh5 (ENSOMEG00000020820)	MYO15A (ENSOMEG00000020933)	ENSOMEG00000021095	hapstr1b (ENSOMEG00000021142)	abcg2c (ENSOMEG00000021272)	ENSOMEG00000000565
Javanese ricefish	MODERN SPECIES		c3b.2 (ENSOJAG00000011284)	ENSOJAG00000011472	ENSOJAG00000011496	ttyh3b (ENSOJAG00000011786)	ENSOJAG00000011852	ENSOJAG00000011861	PLK1 (ENSOJAG00000011874)	rdh8b (ENSOJAG00000011956)	OLFM2 (ENSOJAG00000014220)	MFAP4 (ENSOJAG00000014225)	TRIP10 (ENSOJAG00000014238)	ENSOJAG00000014365	VAV1 (ENSOJAG00000014407)	UBL5 (ENSOJAG00000014456)	pin1 (ENSOJAG00000014472)	ENSOJAG00000014496 #22	ENSOJAG00000014504	ACTG1 (ENSOJAG00000014512)	fbxl18 (ENSOJAG00000014573)	PTCD1 (ENSOJAG00000014663)	ENSOJAG00000014711	ENSOJAG00000014734	mief2 (ENSOJAG00000014808)	alkbh5 (ENSOJAG00000014815)	ENSOJAG00000014819	ENSOJAG00000014874	hapstr1b (ENSOJAG00000015004)	abcg2c (ENSOJAG00000015025)	ENSOJAG00000015322	ENSOJAG00000015330	arpc1a (ENSOJAG00000015354)
Oryzias_a	ANCESTRAL SPECIES	26	ENSGT00950000183060.a.a.d.a	ENSGT00940000163679	ENSGT00950000183157.a.a.b.d	ENSGT00940000157752	ENSGT00390000014423	ENSGT00940000155412.a.a.b	ENSGT00940000154535.B	ENSGT00950000183249	ENSGT00940000159148.b	ENSGT00940000154615.i.a.b	ENSGT00950000183047.c.a.b	ENSGT00940000154130.a.a.a	ENSGT00940000159125	ENSGT00390000001945	ENSGT00640000091578	ENSGT00530000063725.p.f.d #22	ENSGT01100000263598	ENSGT00950000182960.a.a.b.e.b	ENSGT00390000015109	ENSGT00940000153974.A	ENSGT00390000010052.b	ENSGT00400000022459	ENSGT00390000013127.b	ENSGT00390000009298	ENSGT00930000151032.A.c.a	ENSGT00940000156222.a.b	ENSGT00390000002886.a.a.a	ENSGT00940000165949	ENSGT00940000173775	ENSGT00940000177139	ENSGT00950000183183.b.a
Japanese Medaka HdrR	MODERN SPECIES		ENSORLG00000009629	ENSORLG00000009620	PLK1 (ENSORLG00000009603)	ENSORLG00000024728	rdh8b (ENSORLG00000009566)	ENSORLG00000022633	ENSORLG00000022665	ENSORLG00000024788	ENSORLG00000009484	ENSORLG00000009446	TRIP10 (ENSORLG00000009436)	ENSORLG00000009393	VAV1 (ENSORLG00000009385)	UBL5 (ENSORLG00000023784)	pin1 (ENSORLG00000009334)	ENSORLG00000019573 #22	ENSORLG00000022786	actb1 (ENSORLG00000009309)	fbxl18 (ENSORLG00000009288)	PTCD1 (ENSORLG00000009275)	ENSORLG00000009263	ENSORLG00000009252	mief2 (ENSORLG00000009240)	alkbh5 (ENSORLG00000009235)	ENSORLG00000030000	ENSORLG00000009184	ENSORLG00000027721	hapstr1b (ENSORLG00000022770)	abcg2c (ENSORLG00000009145)	ENSORLG00000024225	arpc1a (ENSORLG00000009096)
Chinese medaka	MODERN SPECIES	973		ENSOSIG00000016522	ttyh3b (ENSOSIG00000016520)	ENSOSIG00000016516	ENSOSIG00000016514	PLK1 (ENSOSIG00000016380)	ENSOSIG00000016377	rdh8b (ENSOSIG00000016376)	OLFM2 (ENSOSIG00000016172)	MFAP4 (ENSOSIG00000016168)	TRIP10 (ENSOSIG00000016166)	ENSOSIG00000016158	VAV1 (ENSOSIG00000016014)	UBL5 (ENSOSIG00000016012)	pin1 (ENSOSIG00000016011)	ENSOSIG00000015974 #22	actb1 (ENSOSIG00000015919)	fbxl18 (ENSOSIG00000015916)	PTCD1 (ENSOSIG00000015915)	ENSOSIG00000015907	ENSOSIG00000015902	mief2 (ENSOSIG00000015901)	alkbh5 (ENSOSIG00000015899)	ENSOSIG00000015781	hapstr1b (ENSOSIG00000015764)	abcg2c (ENSOSIG00000015227)	ENSOSIG00000015222	ENSOSIG00000015221	arpc1a (ENSOSIG00000015220)	arpc1b (ENSOSIG00000015215)	ENSOSIG00000015214
Cyprinodontiformes	ANCESTRAL SPECIES	18	ENSGT00940000163679	ENSGT00950000183157.a.a.b.d	ENSGT00940000157752	ENSGT00390000014423	ENSGT00940000155412.a.a.b	ENSGT00940000154535.B	ENSGT00940000178300	ENSGT00950000183249	ENSGT00940000159148.b	ENSGT00940000154615.i.a.b	ENSGT00950000183047.c.a.b	ENSGT00940000154130.a.a.a	ENSGT00940000159125	ENSGT00390000001945	ENSGT00640000091578	ENSGT00530000063725.p.f.d #22	ENSGT01100000263598	ENSGT00950000182960.a.a.b.e.b	ENSGT00390000015109	ENSGT00940000153974.A	ENSGT00390000010052.b	ENSGT00400000022459	ENSGT00390000013127.b	ENSGT00390000009298	ENSGT00930000151032.A.c.a	ENSGT00940000155335.s.a	ENSGT00940000156222.a.b	ENSGT00390000002886.a.a.a	ENSGT00940000165949	ENSGT00940000173775	ENSGT00940000155366.b.b.d.a
Cyprinodontoidei	ANCESTRAL SPECIES	257															ENSGT00990000204057	ENSGT00530000063725.p.f.d #22
Poeciliinae	DUPLICATION
Poeciliinae	ANCESTRAL SPECIES	9	ENSGT00940000158660	ENSGT00940000154391.a.a	ENSGT00390000009908	ENSGT00940000156063.l	ENSGT00940000156063.k	ENSGT00940000154978	ENSGT00940000160339	ENSGT01100000263512.a.a.b.b	ENSGT00940000155201.c	ENSGT00940000158472	ENSGT00940000159559	ENSGT00940000159333.j	ENSGT00390000011249	ENSGT00530000063405.a	ENSGT00990000204057	ENSGT00530000063725.p.f.d.c #22	ENSGT00390000007753.a	ENSGT00940000154922.a	ENSGT00940000176873	ENSGT01100000263833	ENSGT00530000064271	ENSGT00940000155636.b.a	ENSGT00940000153463.b.b	ENSGT01030000234642.a.b.b.d.a.f	ENSGT00940000154196.b	ENSGT00940000160591.a.a	ENSGT01020000230351.B.j.a	ENSGT00390000005096	ENSGT00940000165861	ENSGT00940000153576.c.a.a.b	ENSGT00940000156001.c
Poecilia	DUPLICATION
Poecilia	DUPLICATION
Poecilia	ANCESTRAL SPECIES																	ENSGT00530000063725.p.f.d.c.a.a #22
NAME_6	ANCESTRAL SPECIES	78																ENSGT00530000063725.p.f.d.c.a.a #22	ENSGT00390000007753.a	ENSGT00940000154922.a	ENSGT00940000176873	ENSGT01100000263833	ENSGT00530000064271	ENSGT00940000155636.b.a	ENSGT00940000153463.b.b	ENSGT01030000234642.a.b.b.d.a.f	ENSGT00940000154196.b	ENSGT00940000160591.a.a	ENSGT01020000230351.B.j.a	ENSGT00390000005096	ENSGT00940000165861	ENSGT00940000153576.c.a.a.b	ENSGT00940000156001.c
Amazon molly	DUPLICATION
Amazon molly	DUPLICATION
Amazon molly	DUPLICATION
Amazon molly	DUPLICATION
Amazon molly	DUPLICATION
Amazon molly	MODERN SPECIES	1191															ENSPFOG00000023244	ENSPFOG00000023559 #22
Amazon molly	MODERN SPECIES	196																ENSPFOG00000022731 #22
Amazon molly	MODERN SPECIES	414																ENSPFOG00000012228 #22	ero1b (ENSPFOG00000012048)	slc22a7a (ENSPFOG00000011985)	ENSPFOG00000022843	rrp36 (ENSPFOG00000011959)	gtpbp2b (ENSPFOG00000011879)	tp53bp2b (ENSPFOG00000011765)	ENSPFOG00000011589	rcor3 (ENSPFOG00000011407)	irf2bp2b (ENSPFOG00000011387)	p2rx3b (ENSPFOG00000011264)	pold4 (ENSPFOG00000011260)	ENSPFOG00000010995	slc43a1b (ENSPFOG00000010986)	zdhhc5a (ENSPFOG00000010983)	tmx2b (ENSPFOG00000010938)
Amazon molly	DUPLICATION
Amazon molly	MODERN SPECIES	382	smad1 (ENSPFOG00000024550)	mmaa (ENSPFOG00000008521)	ENSPFOG00000024596	ZNF827 (ENSPFOG00000008596)	lsm6 (ENSPFOG00000008881)	ENSPFOG00000008904	pou4f2 (ENSPFOG00000008912)	ednraa (ENSPFOG00000008928)	tmem184c (ENSPFOG00000009030)	prmt9 (ENSPFOG00000009121)	arhgap10 (ENSPFOG00000009231)	nr3c2 (ENSPFOG00000009620)	ENSPFOG00000009829	tbce (ENSPFOG00000009949)	ENSPFOG00000022544 #22	ENSPFOG00000010108 #22	ENSPFOG00000010157 #22
Amazon molly	MODERN SPECIES	125																ENSPFOG00000024652 #22
Amazon molly	MODERN SPECIES	1120														ENSPFOG00000024189 #22	ENSPFOG00000023769 #22	ENSPFOG00000022654 #22
Amazon molly	MODERN SPECIES	382	hhip (ENSPFOG00000008387)	smad1 (ENSPFOG00000024550)	mmaa (ENSPFOG00000008521)	ENSPFOG00000024596	ZNF827 (ENSPFOG00000008596)	lsm6 (ENSPFOG00000008881)	ENSPFOG00000008904	pou4f2 (ENSPFOG00000008912)	ednraa (ENSPFOG00000008928)	tmem184c (ENSPFOG00000009030)	prmt9 (ENSPFOG00000009121)	arhgap10 (ENSPFOG00000009231)	nr3c2 (ENSPFOG00000009620)	ENSPFOG00000009829	tbce (ENSPFOG00000009949)	ENSPFOG00000022544 #22	ENSPFOG00000010108 #22	ENSPFOG00000010157 #22
Poecilia	ANCESTRAL SPECIES	64																ENSGT00530000063725.p.f.d.c.a.b #22	ENSGT00390000007753.a	ENSGT00940000154922.a	ENSGT00940000176873	ENSGT01100000263833	ENSGT00530000064271	ENSGT00940000155636.b.a	ENSGT00940000153463.b.b	ENSGT01030000234642.a.b.b.d.a.f	ENSGT00940000154196.b	ENSGT00940000160591.a.a	ENSGT01020000230351.B.j.a	ENSGT00390000005096	ENSGT00940000165861	ENSGT00940000153576.c.a.a.b	ENSGT00940000156001.c
NAME_6	ANCESTRAL SPECIES																	ENSGT00530000063725.p.f.d.c.a.b #22
Amazon molly	DUPLICATION
Amazon molly	MODERN SPECIES	1189																ENSPFOG00000022128 #22
Amazon molly	MODERN SPECIES	1120																ENSPFOG00000024189 #22	ENSPFOG00000023769 #22	ENSPFOG00000022654 #22
Guppy	MODERN SPECIES	439	tmem184c (ENSPREG00000023231)	prmt9 (ENSPREG00000023230)	arhgap10 (ENSPREG00000023229)	nr3c2 (ENSPREG00000023228)	rbm34 (ENSPREG00000023227)	tbce (ENSPREG00000023225)	ENSPREG00000023224 #22	ENSPREG00000023215 #22	ENSPREG00000023200	ENSPREG00000023172	ENSPREG00000023167	ENSPREG00000023119 #22	ENSPREG00000023063	ENSPREG00000023034	ENSPREG00000023018 #22	ENSPREG00000022917 #22	ero1b (ENSPREG00000022820)	slc22a7a (ENSPREG00000022811)	ENSPREG00000022792	ENSPREG00000022790	rrp36 (ENSPREG00000022787)	gtpbp2b (ENSPREG00000022774)	tp53bp2b (ENSPREG00000022746)	ENSPREG00000022722	rcor3 (ENSPREG00000022709)	irf2bp2b (ENSPREG00000022703)	p2rx3b (ENSPREG00000022692)	ENSPREG00000022688	ENSPREG00000022665	slc43a1b (ENSPREG00000022651)	zdhhc5a (ENSPREG00000022645)
Poecilia	DUPLICATION
Poecilia	ANCESTRAL SPECIES	296																ENSGT00530000063725.p.f.d.c.b.a #22	ENSGT00940000164067.C.s.a
Guppy	DUPLICATION
Guppy	MODERN SPECIES	439	ednraa (ENSPREG00000023232)	tmem184c (ENSPREG00000023231)	prmt9 (ENSPREG00000023230)	arhgap10 (ENSPREG00000023229)	nr3c2 (ENSPREG00000023228)	rbm34 (ENSPREG00000023227)	tbce (ENSPREG00000023225)	ENSPREG00000023224 #22	ENSPREG00000023215 #22	ENSPREG00000023200	ENSPREG00000023172	ENSPREG00000023167	ENSPREG00000023119 #22	ENSPREG00000023063	ENSPREG00000023034	ENSPREG00000023018 #22	ENSPREG00000022917 #22	ero1b (ENSPREG00000022820)	slc22a7a (ENSPREG00000022811)	ENSPREG00000022792	ENSPREG00000022790	rrp36 (ENSPREG00000022787)	gtpbp2b (ENSPREG00000022774)	tp53bp2b (ENSPREG00000022746)	ENSPREG00000022722	rcor3 (ENSPREG00000022709)	irf2bp2b (ENSPREG00000022703)	p2rx3b (ENSPREG00000022692)	ENSPREG00000022688	ENSPREG00000022665	slc43a1b (ENSPREG00000022651)
Guppy	MODERN SPECIES	439	ZNF827 (ENSPREG00000023239)	lsm6 (ENSPREG00000023235)	pou4f2 (ENSPREG00000023234)	ednraa (ENSPREG00000023232)	tmem184c (ENSPREG00000023231)	prmt9 (ENSPREG00000023230)	arhgap10 (ENSPREG00000023229)	nr3c2 (ENSPREG00000023228)	rbm34 (ENSPREG00000023227)	tbce (ENSPREG00000023225)	ENSPREG00000023224 #22	ENSPREG00000023215 #22	ENSPREG00000023200	ENSPREG00000023172	ENSPREG00000023167	ENSPREG00000023119 #22	ENSPREG00000023063	ENSPREG00000023034	ENSPREG00000023018 #22	ENSPREG00000022917 #22	ero1b (ENSPREG00000022820)	slc22a7a (ENSPREG00000022811)	ENSPREG00000022792	ENSPREG00000022790	rrp36 (ENSPREG00000022787)	gtpbp2b (ENSPREG00000022774)	tp53bp2b (ENSPREG00000022746)	ENSPREG00000022722	rcor3 (ENSPREG00000022709)	irf2bp2b (ENSPREG00000022703)	p2rx3b (ENSPREG00000022692)
NAME_6	ANCESTRAL SPECIES																	ENSGT00530000063725.p.f.d.c.b.a #22
Amazon molly	MODERN SPECIES	1120															ENSPFOG00000024189 #22	ENSPFOG00000023769 #22	ENSPFOG00000022654 #22
Poecilia	ANCESTRAL SPECIES																	ENSGT00530000063725.p.f.d.c.b.b #22
Guppy	MODERN SPECIES	439	smarca5 (ENSPREG00000023250)	frem3 (ENSPREG00000023248)	hhip (ENSPREG00000023246)	smad1 (ENSPREG00000023244)	mmaa (ENSPREG00000023243)	ZNF827 (ENSPREG00000023239)	lsm6 (ENSPREG00000023235)	pou4f2 (ENSPREG00000023234)	ednraa (ENSPREG00000023232)	tmem184c (ENSPREG00000023231)	prmt9 (ENSPREG00000023230)	arhgap10 (ENSPREG00000023229)	nr3c2 (ENSPREG00000023228)	rbm34 (ENSPREG00000023227)	tbce (ENSPREG00000023225)	ENSPREG00000023224 #22	ENSPREG00000023215 #22	ENSPREG00000023200	ENSPREG00000023172	ENSPREG00000023167	ENSPREG00000023119 #22	ENSPREG00000023063	ENSPREG00000023034	ENSPREG00000023018 #22	ENSPREG00000022917 #22	ero1b (ENSPREG00000022820)	slc22a7a (ENSPREG00000022811)	ENSPREG00000022792	ENSPREG00000022790	rrp36 (ENSPREG00000022787)	gtpbp2b (ENSPREG00000022774)
Platyfish	DUPLICATION
Platyfish	DUPLICATION
Platyfish	MODERN SPECIES	19	smad1 (ENSXMAG00000009618)	mmaa (ENSXMAG00000009615)	ZNF827 (ENSXMAG00000009608)	lsm6 (ENSXMAG00000009606)	pou4f2 (ENSXMAG00000018789)	ENSXMAG00000028074	ednraa (ENSXMAG00000009592)	tmem184c (ENSXMAG00000009576)	prmt9 (ENSXMAG00000017138)	arhgap10 (ENSXMAG00000013826)	nr3c2 (ENSXMAG00000013809)	rbm34 (ENSXMAG00000029852)	tbce (ENSXMAG00000013806)	ENSXMAG00000029982	ENSXMAG00000021553 #22	ENSXMAG00000023672 #22	ENSXMAG00000030075 #22	ero1b (ENSXMAG00000002851)	slc22a7a (ENSXMAG00000013805)	rrp36 (ENSXMAG00000013804)	ENSXMAG00000026148	ENSXMAG00000024477	gtpbp2b (ENSXMAG00000013799)	tp53bp2b (ENSXMAG00000013797)	HNRNPLL (ENSXMAG00000013789)	rcor3 (ENSXMAG00000013784)	irf2bp2b (ENSXMAG00000026835)	p2rx3b (ENSXMAG00000013768)	pold4 (ENSXMAG00000013767)	ENSXMAG00000013750	slc43a1b (ENSXMAG00000013740)
Platyfish	MODERN SPECIES	19	hhip (ENSXMAG00000009627)	smad1 (ENSXMAG00000009618)	mmaa (ENSXMAG00000009615)	ZNF827 (ENSXMAG00000009608)	lsm6 (ENSXMAG00000009606)	pou4f2 (ENSXMAG00000018789)	ENSXMAG00000028074	ednraa (ENSXMAG00000009592)	tmem184c (ENSXMAG00000009576)	prmt9 (ENSXMAG00000017138)	arhgap10 (ENSXMAG00000013826)	nr3c2 (ENSXMAG00000013809)	rbm34 (ENSXMAG00000029852)	tbce (ENSXMAG00000013806)	ENSXMAG00000029982	ENSXMAG00000021553 #22	ENSXMAG00000023672 #22	ENSXMAG00000030075 #22	ero1b (ENSXMAG00000002851)	slc22a7a (ENSXMAG00000013805)	rrp36 (ENSXMAG00000013804)	ENSXMAG00000026148	ENSXMAG00000024477	gtpbp2b (ENSXMAG00000013799)	tp53bp2b (ENSXMAG00000013797)	HNRNPLL (ENSXMAG00000013789)	rcor3 (ENSXMAG00000013784)	irf2bp2b (ENSXMAG00000026835)	p2rx3b (ENSXMAG00000013768)	pold4 (ENSXMAG00000013767)	ENSXMAG00000013750
Platyfish	MODERN SPECIES	19	mmaa (ENSXMAG00000009615)	ZNF827 (ENSXMAG00000009608)	lsm6 (ENSXMAG00000009606)	pou4f2 (ENSXMAG00000018789)	ENSXMAG00000028074	ednraa (ENSXMAG00000009592)	tmem184c (ENSXMAG00000009576)	prmt9 (ENSXMAG00000017138)	arhgap10 (ENSXMAG00000013826)	nr3c2 (ENSXMAG00000013809)	rbm34 (ENSXMAG00000029852)	tbce (ENSXMAG00000013806)	ENSXMAG00000029982	ENSXMAG00000021553 #22	ENSXMAG00000023672 #22	ENSXMAG00000030075 #22	ero1b (ENSXMAG00000002851)	slc22a7a (ENSXMAG00000013805)	rrp36 (ENSXMAG00000013804)	ENSXMAG00000026148	ENSXMAG00000024477	gtpbp2b (ENSXMAG00000013799)	tp53bp2b (ENSXMAG00000013797)	HNRNPLL (ENSXMAG00000013789)	rcor3 (ENSXMAG00000013784)	irf2bp2b (ENSXMAG00000026835)	p2rx3b (ENSXMAG00000013768)	pold4 (ENSXMAG00000013767)	ENSXMAG00000013750	slc43a1b (ENSXMAG00000013740)	zdhhc5a (ENSXMAG00000013732)
Poeciliinae	ANCESTRAL SPECIES																	ENSGT00530000063725.p.f.d.d #22
Poecilia	ANCESTRAL SPECIES	295																ENSGT00530000063725.p.f.d.d #22	ENSGT00940000164067.C.s.b
NAME_6	ANCESTRAL SPECIES																	ENSGT00530000063725.p.f.d.d #22
Amazon molly	MODERN SPECIES	382	mmaa (ENSPFOG00000008521)	ENSPFOG00000024596	ZNF827 (ENSPFOG00000008596)	lsm6 (ENSPFOG00000008881)	ENSPFOG00000008904	pou4f2 (ENSPFOG00000008912)	ednraa (ENSPFOG00000008928)	tmem184c (ENSPFOG00000009030)	prmt9 (ENSPFOG00000009121)	arhgap10 (ENSPFOG00000009231)	nr3c2 (ENSPFOG00000009620)	ENSPFOG00000009829	tbce (ENSPFOG00000009949)	ENSPFOG00000022544 #22	ENSPFOG00000010108 #22	ENSPFOG00000010157 #22
Sailfin molly	MODERN SPECIES	3164																ENSPLAG00000017770 #22
Guppy	MODERN SPECIES	439	frem3 (ENSPREG00000023248)	hhip (ENSPREG00000023246)	smad1 (ENSPREG00000023244)	mmaa (ENSPREG00000023243)	ZNF827 (ENSPREG00000023239)	lsm6 (ENSPREG00000023235)	pou4f2 (ENSPREG00000023234)	ednraa (ENSPREG00000023232)	tmem184c (ENSPREG00000023231)	prmt9 (ENSPREG00000023230)	arhgap10 (ENSPREG00000023229)	nr3c2 (ENSPREG00000023228)	rbm34 (ENSPREG00000023227)	tbce (ENSPREG00000023225)	ENSPREG00000023224 #22	ENSPREG00000023215 #22	ENSPREG00000023200	ENSPREG00000023172	ENSPREG00000023167	ENSPREG00000023119 #22	ENSPREG00000023063	ENSPREG00000023034	ENSPREG00000023018 #22	ENSPREG00000022917 #22	ero1b (ENSPREG00000022820)	slc22a7a (ENSPREG00000022811)	ENSPREG00000022792	ENSPREG00000022790	rrp36 (ENSPREG00000022787)	gtpbp2b (ENSPREG00000022774)	tp53bp2b (ENSPREG00000022746)
NAME_4	ANCESTRAL SPECIES																	ENSGT00530000063725.p.f.d #22
Mummichog	MODERN SPECIES	2496	arpc1a (ENSFHEG00000000760)	ENSFHEG00000012893	ENSFHEG00000012881	abcg2c (ENSFHEG00000012869)	hapstr1b (ENSFHEG00000012815)	ENSFHEG00000012781	ENSFHEG00000012696	ENSFHEG00000012525	mief2 (ENSFHEG00000012519)	ENSFHEG00000012508	ENSFHEG00000012501	PTCD1 (ENSFHEG00000012491)	fbxl18 (ENSFHEG00000012475)	ENSFHEG00000012469	ENSFHEG00000012458	ENSFHEG00000012447 #22	ENSFHEG00000012440	pin1 (ENSFHEG00000012428)	UBL5 (ENSFHEG00000012408)	VAV1 (ENSFHEG00000012393)	ENSFHEG00000012299	TRIP10 (ENSFHEG00000012284)
Sheepshead minnow	MODERN SPECIES	1255															ENSCVAG00000012884	ENSCVAG00000012877 #22	pin1 (ENSCVAG00000012853)	UBL5 (ENSCVAG00000012829)	VAV1 (ENSCVAG00000012809)	ENSCVAG00000012688	TRIP10 (ENSCVAG00000012635)
Aplocheiloidei	ANCESTRAL SPECIES	17	ENSGT00940000163679	ENSGT00950000183157.a.a.b.d	ENSGT00940000157752	ENSGT00390000014423	ENSGT00940000155412.a.a.b	ENSGT00940000154535.B	ENSGT00940000178300	ENSGT00950000183249	ENSGT00940000159148.b	ENSGT00940000154615.i.a.b	ENSGT00950000183047.c.a.b	ENSGT00940000154130.a.a.a	ENSGT00940000159125	ENSGT00390000001945	ENSGT00640000091578	ENSGT00530000063725.p.f.d #22	ENSGT01100000263598	ENSGT00950000182960.a.a.b.e.b	ENSGT00390000015109	ENSGT00940000153974.A	ENSGT00390000010052.b	ENSGT00400000022459	ENSGT00390000013127.b	ENSGT00390000009298	ENSGT00940000155335.s.a	ENSGT00940000156222.a.b	ENSGT00390000002886.a.a.a	ENSGT00940000165949	ENSGT00940000177139	ENSGT00950000183183.b.a	ENSGT00950000183183.b.b
Mangrove rivulus	MODERN SPECIES		ENSKMAG00000009273	ENSKMAG00000009244	PLK1 (ENSKMAG00000009205)	ENSKMAG00000009182	rdh8b (ENSKMAG00000009171)	ENSKMAG00000009144	ENSKMAG00000009130	ENSKMAG00000009120	OLFM2 (ENSKMAG00000009093)	MFAP4 (ENSKMAG00000009058)	TRIP10 (ENSKMAG00000009041)	ENSKMAG00000009029	VAV1 (ENSKMAG00000008858)	UBL5 (ENSKMAG00000008819)	pin1 (ENSKMAG00000008796)	ENSKMAG00000008781 #22	ENSKMAG00000008767	ENSKMAG00000008747	fbxl18 (ENSKMAG00000008729)	PTCD1 (ENSKMAG00000008708)	ENSKMAG00000008693	ENSKMAG00000008664	mief2 (ENSKMAG00000008644)	alkbh5 (ENSKMAG00000008615)	MYO15A (ENSKMAG00000008445)	ENSKMAG00000008300	hapstr1b (ENSKMAG00000008256)	abcg2c (ENSKMAG00000008205)	ENSKMAG00000008189	arpc1a (ENSKMAG00000008145)	arpc1b (ENSKMAG00000008109)
Turquoise killifish	MODERN SPECIES	1611	mad1l1 (ENSNFUG00015000517)	ENSNFUG00015000555 ##29	MFNG (ENSNFUG00015000571)	TTYH3B (ENSNFUG00015000614)	ENSNFUG00015000642	FSCN1 (ENSNFUG00015000667)	PLK1 (ENSNFUG00015000714)	PALB2 (ENSNFUG00015000754)	rdh8b (ENSNFUG00015000766)	OLFM2B (ENSNFUG00015000953)	TRIP10 (ENSNFUG00015001050)	ENSNFUG00015001300	VAV1 (ENSNFUG00015001308)	UBL5 (ENSNFUG00015001318)	pin1 (ENSNFUG00015001320)	ENSNFUG00015001324 #22	Nfu_g_1_007201 (ENSNFUG00015001337)	ENSNFUG00015001349	GPR108 (ENSNFUG00015001508)	ENSNFUG00015001781	CAMSAP3 (ENSNFUG00015001822)	LPAR2B (ENSNFUG00015001847)	ENSNFUG00015001853	ENSNFUG00015001866	akap8l (ENSNFUG00015001882)	GLIS2 (ENSNFUG00015001896)	ENSNFUG00015001910	ENSNFUG00015001915	ENSNFUG00015001922	ENSNFUG00015001930	Nfu_g_1_007107 (ENSNFUG00015001936)
Ovalentaria_B	ANCESTRAL SPECIES	4	ENSGT00940000163566.a.a	ENSGT00940000157752	ENSGT00390000014423	ENSGT00940000155412.a.a.b	ENSGT00940000154535.B	ENSGT00940000178300	ENSGT00950000183249	ENSGT00940000159148.b	ENSGT01060000248589.A.d	ENSGT00940000154615.i.a.b	ENSGT00950000183047.c.a.b	ENSGT00940000154130.a.a.a	ENSGT00940000159125	ENSGT00390000001945	ENSGT00640000091578	ENSGT00530000063725.p.f.d #22	ENSGT00950000182960.a.a.b.e.b	ENSGT00390000015109	ENSGT00940000153974.A	ENSGT00400000022459	ENSGT00390000010052.b	ENSGT00390000013127.b	ENSGT00390000009298	ENSGT00930000151032.A.c.a	ENSGT00940000155335.s.a	ENSGT00940000156222.a.b	ENSGT00390000002886.a.a.a	ENSGT00940000165949	ENSGT00940000173775	ENSGT00940000177139	ENSGT00950000183183.b.a
Cichlidae	ANCESTRAL SPECIES	285															ENSGT00990000204057.b	ENSGT00530000063725.p.f.d #22
Pseudocrenilabrinae	ANCESTRAL SPECIES	3	ENSGT00950000183060.a.a.d.a	ENSGT00940000163679	ENSGT00950000183157.a.a.b.d	ENSGT00940000163566.a.a	ENSGT00940000157752	ENSGT00390000014423	ENSGT00940000155412.a.a.b	ENSGT00940000154535.B	ENSGT00940000159148.b	ENSGT00940000154615.i.a.b	ENSGT00950000183047.c.a.b	ENSGT00940000154130.a.a.a	ENSGT00940000159125	ENSGT00390000001945	ENSGT00640000091578	ENSGT00530000063725.p.f.d #22	ENSGT00950000182960.a.a.a.a	ENSGT00950000182960.a.a.a.b	ENSGT00530000063725.p.f.c.b #22	ENSGT01100000263598	ENSGT00950000182960.a.a.b.e.b	ENSGT00390000015109	ENSGT00940000153974.A	ENSGT00400000022459	ENSGT00390000010052.b	ENSGT00390000013127.b	ENSGT00390000009298	ENSGT00940000155335.s.a	ENSGT00940000156222.a.b	ENSGT00990000204818.a	ENSGT00390000002886.a.a.a
Nile tilapia	DUPLICATION
Nile tilapia	MODERN SPECIES	18	ENSONIG00000000169	ttyh3b (ENSONIG00000000171)	ENSONIG00000000175	ENSONIG00000000177	rasd3 (ENSONIG00000000178)	plk1 (ENSONIG00000000179)	ENSONIG00000000181	rdh8b (ENSONIG00000000184)	OLFM2 (ENSONIG00000000204)	MFAP4 (ENSONIG00000000210)	TRIP10 (ENSONIG00000000213)	ENSONIG00000000220	VAV1 (ENSONIG00000000226)	UBL5 (ENSONIG00000000251)	pin1 (ENSONIG00000027273)	ENSONIG00000000258 #22	ENSONIG00000036434 #22	ENSONIG00000040827	ENSONIG00000031994	ENSONIG00000033301	ENSONIG00000031015	ACTB (ENSONIG00000003148)	ACTG1 (ENSONIG00000033329)	ENSONIG00000036066	ENSONIG00000003153 #22	ENSONIG00000025166	fbxl18 (ENSONIG00000003165)	PTCD1 (ENSONIG00000003168)	zgc:112980 (ENSONIG00000003172)	ENSONIG00000032900	smcr8b (ENSONIG00000003176)
Nile tilapia	MODERN SPECIES	18	ttyh3b (ENSONIG00000000171)	ENSONIG00000000175	ENSONIG00000000177	rasd3 (ENSONIG00000000178)	plk1 (ENSONIG00000000179)	ENSONIG00000000181	rdh8b (ENSONIG00000000184)	OLFM2 (ENSONIG00000000204)	MFAP4 (ENSONIG00000000210)	TRIP10 (ENSONIG00000000213)	ENSONIG00000000220	VAV1 (ENSONIG00000000226)	UBL5 (ENSONIG00000000251)	pin1 (ENSONIG00000027273)	ENSONIG00000000258 #22	ENSONIG00000036434 #22	ENSONIG00000040827	ENSONIG00000031994	ENSONIG00000033301	ENSONIG00000031015	ACTB (ENSONIG00000003148)	ACTG1 (ENSONIG00000033329)	ENSONIG00000036066	ENSONIG00000003153 #22	ENSONIG00000025166	fbxl18 (ENSONIG00000003165)	PTCD1 (ENSONIG00000003168)	zgc:112980 (ENSONIG00000003172)	ENSONIG00000032900	smcr8b (ENSONIG00000003176)	mief2 (ENSONIG00000003179)
Pseudocrenilabrinae_A	DUPLICATION
Pseudocrenilabrinae_A	DUPLICATION
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	285																ENSGT00530000063725.p.f.d.g.a #22	ENSGT00950000182960.a.a.b.e.b.b
Lyretail cichlid	MODERN SPECIES	332																ENSNBRG00000010403 #22	ENSNBRG00000010368	ENSNBRG00000010286	ENSNBRG00000010238	ENSNBRG00000010223	ENSNBRG00000010199	fbxl18 (ENSNBRG00000010149)	PTCD1 (ENSNBRG00000010079)	ENSNBRG00000010048	ENSNBRG00000009990	smcr8b (ENSNBRG00000009980)	mief2 (ENSNBRG00000009954)	alkbh5 (ENSNBRG00000009936)	ENSNBRG00000009919	ENSNBRG00000009910	ENSNBRG00000009863
Haplochromini	ANCESTRAL SPECIES	318																ENSGT00530000063725.p.f.d.g.a #22	ENSGT00950000182960.a.a.b.e.b.b
Burton s mouthbrooder	MODERN SPECIES	1679																ENSHBUG00000012742 #22	ENSHBUG00000012709
Pseudocrenilabrinae_A	ANCESTRAL SPECIES																	ENSGT00530000063725.p.f.d.g.b #22
Haplochromini	ANCESTRAL SPECIES																	ENSGT00530000063725.p.f.d.g.b #22
Burton s mouthbrooder	MODERN SPECIES	1203																ENSHBUG00000013855 #22
Haplochromini_A	ANCESTRAL SPECIES	2	ENSGT00950000183157.a.a.b.d	ENSGT00940000163566.a.a	ENSGT00940000157752	ENSGT00390000014423	ENSGT00940000155412.a.a.b	ENSGT00940000154535.B	ENSGT00940000159148.b	ENSGT00940000154615.i.a.b	ENSGT00950000183047.c.a.b	ENSGT00940000154130.a.a.a	ENSGT00940000159125	ENSGT00390000001945	ENSGT00640000091578	ENSGT00530000063725.p.f.d.h #22	ENSGT00530000063725.p.f.c.a #22	ENSGT00530000063725.p.f.d.g.b #22	ENSGT00950000182960.a.a.a.a	ENSGT00950000182960.a.a.a.b.c	ENSGT00530000063725.p.f.c.b #22	ENSGT01100000263598	ENSGT00950000182960.a.a.b.e.b.a	ENSGT00390000015109	ENSGT00940000153974.A	ENSGT00400000022459	ENSGT00390000010052.b	ENSGT00390000013127.b	ENSGT00390000009298	ENSGT00930000151032.A.c.a	ENSGT00990000204818.a	ENSGT00940000155335.s.a	ENSGT00940000156222.a.b
P. nyererei	MODERN SPECIES	440	ttyh3b (ENSPNYG00000006636)	ENSPNYG00000006618	rasd3 (ENSPNYG00000006613)	PLK1 (ENSPNYG00000006585)	rdh8b (ENSPNYG00000006565)	col5a3b (ENSPNYG00000006421)	olfm2b (ENSPNYG00000006329)	MFAP4 (ENSPNYG00000006305)	TRIP10 (ENSPNYG00000006284)	ENSPNYG00000006241	VAV1 (ENSPNYG00000006175)	UBL5 (ENSPNYG00000006140)	pin1 (ENSPNYG00000006121)	ENSPNYG00000006105 #22	ENSPNYG00000006073 #22	ENSPNYG00000005896 #22
Haplochromini_B	ANCESTRAL SPECIES	8	ENSGT00950000183157.a.a.b.d	ENSGT00940000163566.a.a	ENSGT00940000157752	ENSGT00390000014423	ENSGT00940000155412.a.a.b	ENSGT00940000154535.B	ENSGT00940000159148.b	ENSGT00940000154615.i.a.b	ENSGT00950000183047.c.a.b	ENSGT00940000154130.a.a.a	ENSGT00940000159125	ENSGT00390000001945	ENSGT00640000091578	ENSGT00530000063725.p.f.d.h #22	ENSGT00530000063725.p.f.c.a #22	ENSGT00530000063725.p.f.d.g.b #22	ENSGT00950000182996.b.b.c.b.b.a.b.c	ENSGT00940000154664.h.n.c.e.d.a.b	ENSGT00950000182960.a.a.a.b.c	ENSGT00530000063725.p.f.c.b #22	ENSGT01100000263598	ENSGT00950000182960.a.a.b.e.b.a	ENSGT00390000015109	ENSGT00940000153974.A	ENSGT00400000022459	ENSGT00390000010052.b	ENSGT00390000013127.b	ENSGT00390000009298	ENSGT00930000151032.A.c.a	ENSGT00990000204818.a	ENSGT00940000156222.a.b
Zebra mbuna	MODERN SPECIES	1109	rasd3 (ENSMZEG00005013489)	PLK1 (ENSMZEG00005013471)	ENSMZEG00005013457	rdh8b (ENSMZEG00005013446)	ENSMZEG00005013366	OLFM2 (ENSMZEG00005013310)	MFAP4 (ENSMZEG00005013304)	TRIP10 (ENSMZEG00005013280)	ENSMZEG00005013242	VAV1 (ENSMZEG00005013190)	UBL5 (ENSMZEG00005013172)	pin1 (ENSMZEG00005013165)	pin1 (ENSMZEG00005013158)	ENSMZEG00005013149 #22	ENSMZEG00005013139 #22	ENSMZEG00005013075 #22	ENSMZEG00005013062	ENSMZEG00005013027	KLHL10 (ENSMZEG00005013011)	ENSMZEG00005012969	ENSMZEG00005012869 #22	ENSMZEG00005012824	ENSMZEG00005012791	ACTB (ENSMZEG00005012760)	PTCD1 (ENSMZEG00005012722)	zgc:112980 (ENSMZEG00005012703)	smcr8b (ENSMZEG00005012693)	mief2 (ENSMZEG00005012679)	alkbh5 (ENSMZEG00005012673)	MYO15A (ENSMZEG00005012550)	ENSMZEG00005012502
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	5	ENSGT00950000183060.a.a.d.a	ENSGT00940000163679	ENSGT00950000183157.a.a.b.d	ENSGT00940000163566.a.a	ENSGT00940000157752	ENSGT00390000014423	ENSGT00940000155412.a.a.b	ENSGT00940000154535.B	ENSGT00940000159148.b	ENSGT00940000154615.i.a.b	ENSGT00950000183047.c.a.b	ENSGT00940000154130.a.a.a	ENSGT00940000159125	ENSGT00390000001945	ENSGT00640000091578	ENSGT00530000063725.p.f.d.h #22	ENSGT00530000063725.p.f.c.a #22	ENSGT00950000182960.a.a.a.a	ENSGT00950000182960.a.a.a.b.c	ENSGT00530000063725.p.f.c.b #22	ENSGT01100000263598	ENSGT00950000182960.a.a.b.e.b.a	ENSGT00390000015109	ENSGT00940000153974.A	ENSGT00400000022459	ENSGT00390000010052.b	ENSGT00390000013127.b	ENSGT00390000009298	ENSGT00930000151032.A.c.a	ENSGT00990000204818.a	ENSGT00940000155335.s.a
Haplochromini	ANCESTRAL SPECIES	3	ENSGT00950000183060.a.a.d.a	ENSGT00940000163679	ENSGT00950000183157.a.a.b.d	ENSGT00940000163566.a.a	ENSGT00940000157752	ENSGT00390000014423	ENSGT00940000155412.a.a.b	ENSGT00940000154535.B	ENSGT00940000159148.b	ENSGT00940000154615.i.a.b	ENSGT00950000183047.c.a.b	ENSGT00940000154130.a.a.a	ENSGT00940000159125	ENSGT00390000001945	ENSGT00640000091578	ENSGT00530000063725.p.f.d.h #22	ENSGT00530000063725.p.f.c.a #22	ENSGT00950000182960.a.a.a.a	ENSGT00950000182960.a.a.a.b.c	ENSGT00530000063725.p.f.c.b #22	ENSGT01100000263598	ENSGT00950000182960.a.a.b.e.b.a	ENSGT00390000015109	ENSGT00940000153974.A	ENSGT00400000022459	ENSGT00390000010052.b	ENSGT00390000013127.b	ENSGT00390000009298	ENSGT00930000151032.A.c.a	ENSGT00990000204818.a	ENSGT00940000155335.s.a
Haplochromini_A	ANCESTRAL SPECIES	2	ENSGT00950000183060.a.a.d.a	ENSGT00940000163679	ENSGT00950000183157.a.a.b.d	ENSGT00940000163566.a.a	ENSGT00940000157752	ENSGT00390000014423	ENSGT00940000155412.a.a.b	ENSGT00940000154535.B	ENSGT00940000159148.b	ENSGT00940000154615.i.a.b	ENSGT00950000183047.c.a.b	ENSGT00940000154130.a.a.a	ENSGT00940000159125	ENSGT00390000001945	ENSGT00640000091578	ENSGT00530000063725.p.f.d.h #22	ENSGT00530000063725.p.f.c.a #22	ENSGT00530000063725.p.f.d.g.b #22	ENSGT00950000182960.a.a.a.a	ENSGT00950000182960.a.a.a.b.c	ENSGT00530000063725.p.f.c.b #22	ENSGT01100000263598	ENSGT00950000182960.a.a.b.e.b.a	ENSGT00390000015109	ENSGT00940000153974.A	ENSGT00400000022459	ENSGT00390000010052.b	ENSGT00390000013127.b	ENSGT00390000009298	ENSGT00930000151032.A.c.a	ENSGT00990000204818.a
Haplochromini_B	ANCESTRAL SPECIES	8	ENSGT00950000183060.a.a.d.a	ENSGT00940000163679	ENSGT00950000183157.a.a.b.d	ENSGT00940000163566.a.a	ENSGT00940000157752	ENSGT00390000014423	ENSGT00940000155412.a.a.b	ENSGT00940000154535.B	ENSGT00940000159148.b	ENSGT00940000154615.i.a.b	ENSGT00950000183047.c.a.b	ENSGT00940000154130.a.a.a	ENSGT00940000159125	ENSGT00390000001945	ENSGT00640000091578	ENSGT00530000063725.p.f.d.h #22	ENSGT00530000063725.p.f.c.a #22	ENSGT00530000063725.p.f.d.g.b #22	ENSGT00950000182996.b.b.c.b.b.a.b.c	ENSGT00940000154664.h.n.c.e.d.a.b	ENSGT00950000182960.a.a.a.b.c	ENSGT00530000063725.p.f.c.b #22	ENSGT01100000263598	ENSGT00950000182960.a.a.b.e.b.a	ENSGT00390000015109	ENSGT00940000153974.A	ENSGT00400000022459	ENSGT00390000010052.b	ENSGT00390000013127.b	ENSGT00390000009298	ENSGT00930000151032.A.c.a
Eastern happy	MODERN SPECIES	18	ENSACLG00000004292	rasd3 (ENSACLG00000004281)	PLK1 (ENSACLG00000004225)	ENSACLG00000004183	rdh8b (ENSACLG00000004166)	ENSACLG00000004154	col5a3b (ENSACLG00000003865)	olfm2b (ENSACLG00000003499)	MFAP4 (ENSACLG00000003486)	TRIP10 (ENSACLG00000003466)	ENSACLG00000003460	ENSACLG00000003350	VAV1 (ENSACLG00000003292)	UBL5 (ENSACLG00000003272)	pin1 (ENSACLG00000003231)	ENSACLG00000003207 #22	ENSACLG00000003192	ENSACLG00000003185 #22	ENSACLG00000003171	ENSACLG00000003165	ENSACLG00000003149	ENSACLG00000003106	ENSACLG00000003066	ENSACLG00000003013	KLHL10 (ENSACLG00000002998)	ENSACLG00000002975	ACTG1 (ENSACLG00000002912)	ENSACLG00000002873 #22	ENSACLG00000002863	ENSACLG00000002849	fbxl18 (ENSACLG00000002840)
Zebra mbuna	MODERN SPECIES	1109	ENSMZEG00005013511	ENSMZEG00005013492	rasd3 (ENSMZEG00005013489)	PLK1 (ENSMZEG00005013471)	ENSMZEG00005013457	rdh8b (ENSMZEG00005013446)	ENSMZEG00005013366	OLFM2 (ENSMZEG00005013310)	MFAP4 (ENSMZEG00005013304)	TRIP10 (ENSMZEG00005013280)	ENSMZEG00005013242	VAV1 (ENSMZEG00005013190)	UBL5 (ENSMZEG00005013172)	pin1 (ENSMZEG00005013165)	pin1 (ENSMZEG00005013158)	ENSMZEG00005013149 #22	ENSMZEG00005013139 #22	ENSMZEG00005013075 #22	ENSMZEG00005013062	ENSMZEG00005013027	KLHL10 (ENSMZEG00005013011)	ENSMZEG00005012969	ENSMZEG00005012869 #22	ENSMZEG00005012824	ENSMZEG00005012791	ACTB (ENSMZEG00005012760)	PTCD1 (ENSMZEG00005012722)	zgc:112980 (ENSMZEG00005012703)	smcr8b (ENSMZEG00005012693)	mief2 (ENSMZEG00005012679)	alkbh5 (ENSMZEG00005012673)
P. nyererei	MODERN SPECIES	440	mad1l1 (ENSPNYG00000006775)	ENSPNYG00000006687	ttyh3b (ENSPNYG00000006636)	ENSPNYG00000006618	rasd3 (ENSPNYG00000006613)	PLK1 (ENSPNYG00000006585)	rdh8b (ENSPNYG00000006565)	col5a3b (ENSPNYG00000006421)	olfm2b (ENSPNYG00000006329)	MFAP4 (ENSPNYG00000006305)	TRIP10 (ENSPNYG00000006284)	ENSPNYG00000006241	VAV1 (ENSPNYG00000006175)	UBL5 (ENSPNYG00000006140)	pin1 (ENSPNYG00000006121)	ENSPNYG00000006105 #22	ENSPNYG00000006073 #22	ENSPNYG00000005896 #22
Lyretail cichlid	MODERN SPECIES	410	ENSNBRG00000006542	ENSNBRG00000006510 ##29	ENSNBRG00000006422	ttyh3b (ENSNBRG00000006367)	ENSNBRG00000006351	PLK1 (ENSNBRG00000006324)	rdh8b (ENSNBRG00000006246)	col5a3b (ENSNBRG00000006098)	olfm2b (ENSNBRG00000006028)	MFAP4 (ENSNBRG00000006008)	TRIP10 (ENSNBRG00000005996)	ENSNBRG00000005943	VAV1 (ENSNBRG00000005871)	UBL5 (ENSNBRG00000005850)	pin1 (ENSNBRG00000005838)	ENSNBRG00000005640 #22	ENSNBRG00000005510 #22
Midas cichlid	DUPLICATION
Midas cichlid	MODERN SPECIES	629	rdh8b (ENSACIG00000023690)	col5a3b (ENSACIG00000023646)	ENSACIG00000023637	ENSACIG00000023633	ENSACIG00000023629	olfm2b (ENSACIG00000023625)	MFAP4 (ENSACIG00000023624)	TRIP10 (ENSACIG00000023619)	ENSACIG00000023609	VAV1 (ENSACIG00000023603)	UBL5 (ENSACIG00000023598)	pin1 (ENSACIG00000023594)	ENSACIG00000023592	ENSACIG00000023590	ENSACIG00000023464	ENSACIG00000023433 #22
Midas cichlid	MODERN SPECIES	1504																ENSACIG00000023269 #22
Otomorpha	ANCESTRAL SPECIES																	ENSGT00530000063725.p #22
Otophysi	ANCESTRAL SPECIES																	ENSGT00530000063725.p #22
Characiphysae	ANCESTRAL SPECIES	5	ENSGT00940000161518	ENSGT00940000180163	ENSGT00940000157729	ENSGT00390000012419	ENSGT00940000156928	ENSGT00940000166923	ENSGT00940000153675.a.b.b	ENSGT00940000159408	ENSGT00390000005318.b.a.g	ENSGT00940000153311.a.a.b	ENSGT00940000164997.b	ENSGT00520000055634.b.a	ENSGT01100000263518.A.a.a.a	ENSGT01100000263723	ENSGT01080000257410.C	ENSGT00530000063725.p #22	ENSGT00940000160139	ENSGT00530000063835.a	ENSGT00940000158738	ENSGT00940000157198	ENSGT00940000164771.a	ENSGT00390000015634	ENSGT00940000153739.a.a	ENSGT00950000183032.A.b.b.b.a.a	ENSGT00940000156364.a.a	ENSGT00940000163127.b.a.b	ENSGT00940000160661	ENSGT00390000009883	ENSGT00940000160391.f	ENSGT00940000159974	ENSGT01070000253766.B.f.a.c
Characiphysae_b	ANCESTRAL SPECIES	41	ENSGT00940000161518	ENSGT00940000180163	ENSGT00940000157729	ENSGT00390000012419	ENSGT00940000156928	ENSGT00940000166923	ENSGT00940000153675.a.b.b	ENSGT00940000159408	ENSGT00390000005318.b.a.g	ENSGT00940000153311.a.a.b	ENSGT00940000164997.b	ENSGT00520000055634.b.a	ENSGT01100000263518.A.a.a.a	ENSGT01100000263723	ENSGT01080000257410.C	ENSGT00530000063725.p #22	ENSGT00940000160139	ENSGT00530000063835.a	ENSGT00940000158738	ENSGT00940000157198	ENSGT00940000164771.a	ENSGT00390000015634	ENSGT00940000153739.a.a	ENSGT00950000183032.A.b.b.b.a.a	ENSGT00940000156364.a.a	ENSGT00940000163127.b.a.b	ENSGT00940000163127.b.b	ENSGT00940000160661	ENSGT00390000009883	ENSGT00940000160391.f	ENSGT00940000159974
Characoidei	ANCESTRAL SPECIES	51	ENSGT00940000161518	ENSGT00940000157729	ENSGT00390000012419	ENSGT00940000156928	ENSGT00940000166923	ENSGT00940000153675.a.b.b	ENSGT00940000159408.l	ENSGT00940000159408.k	ENSGT00390000005318.b.a.g	ENSGT00940000153311.a.a.b	ENSGT00940000164997.b	ENSGT00520000055634.b.a	ENSGT01100000263518.A.a.a.a	ENSGT01100000263723	ENSGT01080000257410.C	ENSGT00530000063725.p #22	ENSGT00940000160139	ENSGT00530000063835.a	ENSGT00940000158738	ENSGT00940000157198	ENSGT00940000164771.a	ENSGT00390000015634	ENSGT00940000153739.a.a	ENSGT00950000183032.A.b.b.b.a.a	ENSGT00940000156364.a.a	ENSGT00940000163127.b.a.b	ENSGT00940000160661	ENSGT00390000009883	ENSGT00940000160391.f	ENSGT00940000159974	ENSGT01070000253766.B.f.a.c
Mexicana tetra	MODERN SPECIES	6	ENSAMXG00000019820	fbxo44.7 (ENSAMXG00000019871)	ENSAMXG00000038950	ENSAMXG00000019911	fkbp1ab (ENSAMXG00000036550)	sdcbp2 (ENSAMXG00000003567)	ENSAMXG00000039027	NTSR1 (ENSAMXG00000003510)	ENSAMXG00000035049	SLCO4A1 (ENSAMXG00000003400)	ENSAMXG00000030995	ENSAMXG00000037414	ENSAMXG00000040174	ENSAMXG00000026094	ENSAMXG00000040392	ENSAMXG00000037009 #22	gata5 (ENSAMXG00000031119)	ENSAMXG00000003140	HCK (ENSAMXG00000036151)	ENSAMXG00000038605	tm9sf4 (ENSAMXG00000002735)	plagl2 (ENSAMXG00000002660)	pofut1 (ENSAMXG00000002563)	kif3b (ENSAMXG00000002528)	PCMTD2 (ENSAMXG00000002506)	MYT1 (ENSAMXG00000002473)	ENSAMXG00000041831	NPBWR2 (ENSAMXG00000026093)	oprl1 (ENSAMXG00000036124)	LKAAEAR1 (ENSAMXG00000043421)	rgs19 (ENSAMXG00000002442)
Clupeiformes	ANCESTRAL SPECIES																	ENSGT00530000063725.p #22
Atlantic herring	MODERN SPECIES		ENSCHAG00000015057	JUP (ENSCHAG00000013165)	ENSCHAG00000013091	eif1 (ENSCHAG00000013037)	cyt1 (ENSCHAG00000012963)	ENSCHAG00000012589	ENSCHAG00000012341	ENSCHAG00000012123	ENSCHAG00000011818	ENSCHAG00000011786	ENSCHAG00000011752	ENSCHAG00000011748	ENSCHAG00000011704	si:dkeyp-113d7.1 (ENSCHAG00000011692)	ENSCHAG00000011686	ENSCHAG00000011616 #22	prf1.3 (ENSCHAG00000011524)	stx1b (ENSCHAG00000011421)	ENSCHAG00000011363	ENSCHAG00000011067	nme2b.2 (ENSCHAG00000010977)	UTP18 (ENSCHAG00000010661)	btr30 (ENSCHAG00000010646)	zgc:158376 (ENSCHAG00000010625)	ENSCHAG00000010525	kpnb1 (ENSCHAG00000010097)	ENSCHAG00000010075	ENSCHAG00000010061	ENSCHAG00000010026	ENSCHAG00000009977	ENSCHAG00000009952