Bovidae	ANCESTRAL SPECIES	12	ENSGT00940000158741	ENSGT00390000017671.a	ENSGT00940000154222.d.b.d #7	ENSGT00390000009677 #8	ENSGT00390000004417.a #9	ENSGT00390000008749.e #10	ENSGT00390000008427 #11	ENSGT00940000155994 #13	ENSGT01030000234518.E.c.a #14	ENSGT00940000162392 #15	ENSGT00940000156246 #16	ENSGT00940000160513 #18	ENSGT00550000075044 #19	ENSGT00940000155659 #20	ENSGT00390000010852 #21	ENSGT00390000013347.a #22	ENSGT00390000010292 #23	ENSGT00390000005941 #24	ENSGT00390000010382 #25	ENSGT00890000139436.B #26	ENSGT00400000023684.b ##27	ENSGT00940000157682.B #29	ENSGT00940000155480 #30	ENSGT00940000158685 #31	ENSGT00940000159404 #32	ENSGT00940000155993 #33	ENSGT00950000183006.A.b #34	ENSGT00950000183006.B.f.b.a #35	ENSGT00940000158022 #36	ENSGT00950000183119.a.e.b #37	ENSGT00390000000873.a.b
Caprinae	ANCESTRAL SPECIES	10	ENSGT00940000158741	ENSGT00390000017671.a	ENSGT00940000154222.d.b.d #7	ENSGT00390000009677 #8	ENSGT00390000004417.a #9	ENSGT00390000008749.e #10	ENSGT00390000008427 #11	ENSGT00940000155994 #13	ENSGT01030000234518.E.c.a #14	ENSGT00940000162392 #15	ENSGT00940000156246 #16	ENSGT00940000160513 #18	ENSGT00550000075044 #19	ENSGT00940000155659 #20	ENSGT00390000010852 #21	ENSGT00390000013347.a #22	ENSGT00390000010292 #23	ENSGT00390000005941 #24	ENSGT00390000010382 #25	ENSGT00890000139436.B #26	ENSGT00400000023684.a #27	ENSGT00940000157682.B #29	ENSGT00940000155480 #30	ENSGT00940000158685 #31	ENSGT00940000159404 #32	ENSGT00940000155993 #33	ENSGT00950000183006.A.b #34	ENSGT00950000183006.B.f.b.a #35	ENSGT00940000158022 #36	ENSGT00950000183119.a.e.b.f #37	ENSGT00390000000873.a.b
Rambouillet Sheep	MODERN SPECIES	20	SEPTIN7 (ENSOARG00020004276) #7	EEPD1 (ENSOARG00020004192) #8	KIAA0895 (ENSOARG00020004088) #9	ANLN (ENSOARG00020003871) #10	AOAH (ENSOARG00020003525) #11	ENSOARG00020003484 #12	ELMO1 (ENSOARG00020003116) #13	GPR141 (ENSOARG00020003064) #14	THAP5 (ENSOARG00020003037) #15	DNAJB9 (ENSOARG00020003016) #16	ENSOARG00020002993 #17	LRRN3 (ENSOARG00020002986) #18	IMMP2L (ENSOARG00020002972) #19	DOCK4 (ENSOARG00020002182) #20	ZNF277 (ENSOARG00020002033) #21	IFRD1 (ENSOARG00020001965) #22	LSMEM1 (ENSOARG00020001907) #23	TMEM168 (ENSOARG00020001882) #24	BMT2 (ENSOARG00020001855) #25	GPR85 (ENSOARG00020001848) #26	SMIM30 (ENSOARG00020001844) #27	ENSOARG00020001818 #28	PPP1R3A (ENSOARG00020001807) #29	FOXP2 (ENSOARG00020001223) #30	MDFIC (ENSOARG00020001137) #31	TFEC (ENSOARG00020001041) #32	TES (ENSOARG00020000994) #33	CAV2 (ENSOARG00020000978) #34	CAV1 (ENSOARG00020000956) #35	MET (ENSOARG00020000868) #36	ENSOARG00020000812 #37
Goat	MODERN SPECIES	23	HERPUD2 (ENSCHIG00000024009)	SEPTIN7 (ENSCHIG00000013805) #7	EEPD1 (ENSCHIG00000006418) #8	MATCAP2 (ENSCHIG00000018925) #9	ANLN (ENSCHIG00000017068) #10	AOAH (ENSCHIG00000024322) #11	ELMO1 (ENSCHIG00000020902) #13	GPR141 (ENSCHIG00000010814) #14	THAP5 (ENSCHIG00000013925) #15	DNAJB9 (ENSCHIG00000019861) #16	ENSCHIG00000002553	LRRN3 (ENSCHIG00000012067) #18	ENSCHIG00000009535	DOCK4 (ENSCHIG00000020044) #20	ZNF277 (ENSCHIG00000009269) #21	IFRD1 (ENSCHIG00000017336) #22	LSMEM1 (ENSCHIG00000025752) #23	TMEM168 (ENSCHIG00000016804) #24	BMT2 (ENSCHIG00000025584) #25	GPR85 (ENSCHIG00000007525) #26	ENSCHIG00000022950	PPP1R3A (ENSCHIG00000008771) #29	ENSCHIG00000008927 #30	FOXP2 (ENSCHIG00000023721) #30	MDFIC (ENSCHIG00000011870) #31	TFEC (ENSCHIG00000019490) #32	TES (ENSCHIG00000026164) #33	CAV2 (ENSCHIG00000013089) #34	CAV1 (ENSCHIG00000019290) #35	MET (ENSCHIG00000024998) #36	CAPZA2 (ENSCHIG00000013697) #37
Bovinae	ANCESTRAL SPECIES	8	ENSGT00940000154222.d.b.d #7	ENSGT00390000009677 #8	ENSGT00390000004417.a #9	ENSGT00390000008749.e #10	ENSGT00390000008427 #11	ENSGT00940000155994 #13	ENSGT01030000234518.E.c.a #14	ENSGT00940000162392 #15	ENSGT00940000156246 #16	ENSGT01030000235283	ENSGT00550000075044 #19	ENSGT00940000160513 #18	ENSGT00940000154276.jb.a.a.a.a.a.a.b.a.a.b	ENSGT00940000155659 #20	ENSGT00390000010852 #21	ENSGT00390000013347.a #22	ENSGT00390000010292 #23	ENSGT00390000005941 #24	ENSGT00390000010382 #25	ENSGT00890000139436.B #26	ENSGT00400000023684.b ##27	ENSGT00940000157682.B #29	ENSGT00940000155480 #30	ENSGT00940000158685 #31	ENSGT00940000159404 #32	ENSGT00940000155993 #33	ENSGT00950000183006.A.b #34	ENSGT00950000183006.B.f.b.a #35	ENSGT00940000158022 #36	ENSGT00950000183119.a.e.b #37	ENSGT00390000000873.a.b
Bos	ANCESTRAL SPECIES	8	ENSGT00390000009677 #8	ENSGT00390000004417.a #9	ENSGT00390000008749.e #10	ENSGT00390000008427 #11	ENSGT00390000014122.i.a.a #12	ENSGT00940000155994 #13	ENSGT01030000234518.E.c.a #14	ENSGT00940000162392 #15	ENSGT00940000156246 #16	ENSGT01030000235283	ENSGT00550000075044 #19	ENSGT00940000160513 #18	ENSGT00940000154276.jb.a.a.a.a.a.a.b.a.a.b	ENSGT00940000155659 #20	ENSGT00390000010852 #21	ENSGT00390000013347.a #22	ENSGT00390000010292 #23	ENSGT00390000005941 #24	ENSGT00390000010382 #25	ENSGT00890000139436.B #26	ENSGT00400000023684.b ##27	ENSGT00940000157682.B #29	ENSGT00940000155480 #30	ENSGT00940000158685 #31	ENSGT00940000159404 #32	ENSGT00940000155993 #33	ENSGT00950000183006.A.b #34	ENSGT00950000183006.B.f.b.a #35	ENSGT00940000158022 #36	ENSGT00950000183119.a.e.b #37	ENSGT00390000000873.a.b
Bos_b	ANCESTRAL SPECIES	7	ENSGT00390000017671.a	ENSGT00940000154222.d.b.d.g.b #7	ENSGT00390000009677 #8	ENSGT00390000004417.a #9	ENSGT00390000008749.e #10	ENSGT00390000008427 #11	ENSGT00940000155994 #13	ENSGT01030000234518.E.c.a #14	ENSGT00940000162392 #15	ENSGT00940000156246 #16	ENSGT00550000075044 #19	ENSGT00940000160513 #18	ENSGT00940000154276.jb.a.a.a.a.a.a.b.a.a.b.a	ENSGT00940000155659 #20	ENSGT00390000010852 #21	ENSGT00390000013347.a #22	ENSGT00390000010292 #23	ENSGT00390000005941 #24	ENSGT00390000010382 #25	ENSGT00890000139436.B #26	ENSGT00400000023684.b ##27	ENSGT00940000157682.B #29	ENSGT00940000155480 #30	ENSGT00940000158685 #31	ENSGT00940000159404 #32	ENSGT00940000155993 #33	ENSGT00950000183006.A.b #34	ENSGT00950000183006.B.f.b.a #35	ENSGT00940000158022 #36	ENSGT00950000183119.a.e.b #37	ENSGT00390000000873.a.b
Cow	MODERN SPECIES	23	EEPD1 (ENSBTAG00000019065) #8	MATCAP2 (ENSBTAG00000002011) #9	ANLN (ENSBTAG00000009218) #10	AOAH (ENSBTAG00000018119) #11	ENSBTAG00000054914 #12	ELMO1 (ENSBTAG00000003490) #13	GPR141 (ENSBTAG00000002154) #14	THAP5 (ENSBTAG00000021869) #15	DNAJB9 (ENSBTAG00000046588) #16	RGS2 (ENSBTAG00000020620)	LRRN3 (ENSBTAG00000004399) #18	ENSBTAG00000045592	IMMP2L (ENSBTAG00000004398) #19	DOCK4 (ENSBTAG00000021182) #20	ZNF277 (ENSBTAG00000013050) #21	IFRD1 (ENSBTAG00000010549) #22	LSMEM1 (ENSBTAG00000010555) #23	TMEM168 (ENSBTAG00000021967) #24	BMT2 (ENSBTAG00000007608) #25	GPR85 (ENSBTAG00000032844) #26	PPP1R3A (ENSBTAG00000006733) #29	UBE2I (ENSBTAG00000054178)	FOXP2 (ENSBTAG00000011246)	MDFIC (ENSBTAG00000021543) #31	TFEC (ENSBTAG00000014228) #32	ENSBTAG00000055251	TES (ENSBTAG00000021204) #33	CAV2 (ENSBTAG00000049397) #34	CAV1 (ENSBTAG00000017869) #35	MET (ENSBTAG00000006161) #36	CAPZA2 (ENSBTAG00000004072) #37
Hybrid Bos Indicus	MODERN SPECIES	23	AOAH (ENSBIXG00005011153) #11	ELMO1 (ENSBIXG00005010974) #13	ENSBIXG00005005812	ENSBIXG00005010903	GPR141 (ENSBIXG00005000602) #14	THAP5 (ENSBIXG00005010872) #15	DNAJB9 (ENSBIXG00005010838) #16	ENSBIXG00005010817	ENSBIXG00005010797	IMMP2L (ENSBIXG00005010758) #19	LRRN3 (ENSBIXG00005010699) #18	ENSBIXG00005010691	DOCK4 (ENSBIXG00005010646) #20	ZNF277 (ENSBIXG00005010603) #21	ENSBIXG00005010570	IFRD1 (ENSBIXG00005000897) #22	LSMEM1 (ENSBIXG00005000893) #23	ENSBIXG00005000889	TMEM168 (ENSBIXG00005005951) #24	BMT2 (ENSBIXG00005010418) #25	GPR85 (ENSBIXG00005000762) #26	SMIM30 (ENSBIXG00005010364) ##27	PPP1R3A (ENSBIXG00005010352) #29	FOXP2 (ENSBIXG00005010281) #30	MDFIC (ENSBIXG00005006771) #31	TFEC (ENSBIXG00005010074) #32	TES (ENSBIXG00005010013) #33	ENSBIXG00005000753	CAV2 (ENSBIXG00005009987) #34	CAV1 (ENSBIXG00005009977) #35	MET (ENSBIXG00005009936) #36
Bos_a	ANCESTRAL SPECIES	12	ENSGT00390000004417.a #9	ENSGT00390000008749.e #10	ENSGT00390000008427 #11	ENSGT00390000014122.i.a.a #12	ENSGT00940000155994 #13	ENSGT01100000263481.n.a.a.a.b.a.b.a.b.a.a.b.a.b.b.b	ENSGT01030000234518.E.c.a #14	ENSGT00940000162392 #15	ENSGT00940000156246 #16	ENSGT01030000235283	ENSGT00550000075044 #19	ENSGT00940000160513 #18	ENSGT00940000154276.jb.a.a.a.a.a.a.b.a.a.b	ENSGT00940000155659 #20	ENSGT00390000010852 #21	ENSGT00390000013347.a #22	ENSGT00390000010292 #23	ENSGT00390000005941 #24	ENSGT00390000010382 #25	ENSGT00400000023684.b ##27	ENSGT00940000157682.B #29	ENSGT00940000155480 #30	ENSGT00940000158685 #31	ENSGT00940000159404 #32	ENSGT00940000155993 #33	ENSGT00950000183006.A.b #34	ENSGT00950000183006.B.f.b.a #35	ENSGT00940000158022 #36	ENSGT00950000183119.a.e.b #37	ENSGT00390000000873.a.b	ENSGT00940000159231
Wild yak	MODERN SPECIES	83													DOCK4 (ENSBMUG00000024332) #20	ZNF277 (ENSBMUG00000024369) #21	ENSBMUG00000024379	IFRD1 (ENSBMUG00000024400) #22	LSMEM1 (ENSBMUG00000024419) #23	TMEM168 (ENSBMUG00000024429) #24	BMT2 (ENSBMUG00000024436) #25	SMIM30 (ENSBMUG00000024456) ##27
Domestic yak	MODERN SPECIES	23	MATCAP2 (ENSBGRG00000000402) #9	ANLN (ENSBGRG00000000516) #10	AOAH (ENSBGRG00000000721) #11	ELMO1 (ENSBGRG00000001001) #13	ENSBGRG00000001068	GPR141 (ENSBGRG00000001077) #14	THAP5 (ENSBGRG00000001089) #15	DNAJB9 (ENSBGRG00000001118) #16	ENSBGRG00000001127	ENSBGRG00000001142	IMMP2L (ENSBGRG00000001153) #19	LRRN3 (ENSBGRG00000001177) #18	ENSBGRG00000001188	DOCK4 (ENSBGRG00000001275) #20	ZNF277 (ENSBGRG00000001704) #21	IFRD1 (ENSBGRG00000001761) #22	LSMEM1 (ENSBGRG00000001792) #23	ENSBGRG00000001803	ENSBGRG00000001808	TMEM168 (ENSBGRG00000001815) #24	BMT2 (ENSBGRG00000001829) #25	SMIM30 (ENSBGRG00000001848) ##27	ENSBGRG00000001853	PPP1R3A (ENSBGRG00000001862) #29	FOXP2 (ENSBGRG00000001901) #30	ENSBGRG00000001995	MDFIC (ENSBGRG00000002028) #31	TFEC (ENSBGRG00000002059) #32	TES (ENSBGRG00000002095) #33	CAV2 (ENSBGRG00000002106) #34	CAV1 (ENSBGRG00000002134) #35
American bison	MODERN SPECIES	3370	EEPD1 (ENSBBBG00000001424) #8	MATCAP2 (ENSBBBG00000006974) #9	ANLN (ENSBBBG00000001422) #10	AOAH (ENSBBBG00000009210) #11	ENSBBBG00000009209	ELMO1 (ENSBBBG00000009207) #13	GPR141 (ENSBBBG00000009206) #14	THAP5 (ENSBBBG00000001421) #15	DNAJB9 (ENSBBBG00000009205) #16	ENSBBBG00000009204	IMMP2L (ENSBBBG00000009203) #19	LRRN3 (ENSBBBG00000000155) #18	ENSBBBG00000000156	DOCK4 (ENSBBBG00000001419) #20	ZNF277 (ENSBBBG00000009202) #21	IFRD1 (ENSBBBG00000009201) #22	LSMEM1 (ENSBBBG00000001418) #23	TMEM168 (ENSBBBG00000009037) #24	BMT2 (ENSBBBG00000009200) #25	GPR85 (ENSBBBG00000009199) #26	SMIM30 (ENSBBBG00000009198) ##27	PPP1R3A (ENSBBBG00000009196) #29	FOXP2 (ENSBBBG00000009195) #30	MDFIC (ENSBBBG00000025491) #31	TFEC (ENSBBBG00000006745) #32	TES (ENSBBBG00000025359) #33	CAV2 (ENSBBBG00000025261) #34	CAV1 (ENSBBBG00000007769) #35	ENSBBBG00000006678	ENSBBBG00000006674 #36	CAPZA2 (ENSBBBG00000025209) #37