Euarchontoglires_A ANCESTRAL SPECIES 17 ENSGT00950000186265 ENSGT00510000047522 #9 ENSGT01070000253775.a.d.a.a.a.b #10 ENSGT00550000074844 #11 ENSGT00940000156003 #12 ENSGT00940000162514 ENSGT00940000155419 #13 ENSGT00940000154738.a #14 ENSGT00940000162392 #16 ENSGT00940000156246 #17 ENSGT00550000075044 #19 ENSGT00940000160513 #18 ENSGT00940000164174 ENSGT00940000155659 #20 ENSGT00390000010852 #21 ENSGT00390000013347.a #22 ENSGT00390000010292 #23 ENSGT00390000005941 ENSGT00390000010382 ENSGT00890000139436.B ENSGT00400000023684 ENSGT00940000157682.B ENSGT00940000155480 ENSGT00940000158685 ENSGT00940000159404 ENSGT00940000155993 ENSGT00950000183006.A.b ENSGT00950000183006.B.f.b.a ENSGT00940000158022 ENSGT00950000183119.a.e.b ENSGT00390000000873.a.b Glires ANCESTRAL SPECIES 18 ENSGT00950000186265 ENSGT00510000047522 #9 ENSGT01070000253775.a.d.a.a.a.b #10 ENSGT00550000074844 #11 ENSGT00940000156003 #12 ENSGT00940000162514 ENSGT00940000155419 #13 ENSGT00940000154738.a #14 ENSGT00940000162392 #16 ENSGT00940000156246 #17 ENSGT00550000075044 #19 ENSGT00940000160513 #18 ENSGT00940000164174 ENSGT00940000155659 #20 ENSGT00390000010852 #21 ENSGT00390000013347.a #22 ENSGT00390000010292 #23 ENSGT00390000005941 ENSGT00390000010382 ENSGT00890000139436.B ENSGT00400000023684 ENSGT00940000157682.B ENSGT00940000155480 ENSGT00940000158685 ENSGT00940000159404 ENSGT00940000155993 ENSGT00950000183006.A.b ENSGT00950000183006.B.f.b.a ENSGT00940000158022 ENSGT00950000183119.a.e.b ENSGT00390000000873.a.b Rodentia ANCESTRAL SPECIES 12 ENSGT01070000253775.a.d.a.a.a.a #8 ENSGT00950000186265 ENSGT00510000047522 #9 ENSGT01070000253775.a.d.a.a.a.b #10 ENSGT00550000074844 #11 ENSGT00940000156003 #12 ENSGT00940000162514 ENSGT00940000155419 #13 ENSGT00940000154738.a #14 ENSGT00940000162392 #16 ENSGT00940000156246 #17 ENSGT00550000075044 #19 ENSGT00940000160513 #18 ENSGT00940000155659 #20 ENSGT00390000010852 #21 ENSGT00390000013347.a #22 ENSGT00390000010292 #23 ENSGT00940000159083 #24 ENSGT00940000154546 #25 ENSGT00940000157123 #26 ENSGT00940000159770 #27 ENSGT00440000033807 ENSGT00940000154018.b #28 ENSGT00390000006412 #29 ENSGT00910000147441 ENSGT00390000014900.b.b.a #31 ENSGT00940000164009 #32 ENSGT00940000153289.a.b ENSGT00390000016820 #33 ENSGT00390000012561.a #34 ENSGT00940000157010 #35 Rodentia_A ANCESTRAL SPECIES 12 ENSGT00390000011863.d #7 ENSGT01070000253775.a.d.a.a.a.a #8 ENSGT00510000047522 #9 ENSGT01070000253775.a.d.a.a.a.b #10 ENSGT00550000074844 #11 ENSGT00940000156003 #12 ENSGT00940000162514 ENSGT00940000155419 #13 ENSGT00940000154738.a #14 ENSGT00940000162392 #16 ENSGT00940000156246 #17 ENSGT00550000075044 #19 ENSGT00940000160513 #18 ENSGT00940000155659 #20 ENSGT00390000010852 #21 ENSGT00390000013347.a #22 ENSGT00390000010292 #23 ENSGT00940000159083 #24 ENSGT00940000154546 #25 ENSGT00940000157123 #26 ENSGT00940000159770 #27 ENSGT00440000033807 ENSGT00940000154018.b #28 ENSGT00390000006412 #29 ENSGT00910000147441 ENSGT00390000014900.b.b.a #31 ENSGT00940000153289.a.b ENSGT00390000016820 #33 ENSGT00390000012561.a #34 ENSGT00940000157010 #35 ENSGT00530000063273.b.a.b.a.b #36 Hystricomorpha ANCESTRAL SPECIES 14 ENSGT00550000074907 ENSGT00390000011863.d #7 ENSGT01070000253775.a.d.a.a.a.a #8 ENSGT00510000047522 #9 ENSGT01070000253775.a.d.a.a.a.b #10 ENSGT00550000074844 #11 ENSGT00940000156003 #12 ENSGT00940000155419 #13 ENSGT00940000154738.a #14 ENSGT00940000162392 #16 ENSGT00940000156246 #17 ENSGT00550000075044 #19 ENSGT00940000160513 #18 ENSGT00940000155659 #20 ENSGT00390000010852 #21 ENSGT00390000013347.a #22 ENSGT00390000010292 #23 ENSGT00940000159083 #24 ENSGT00940000154546 #25 ENSGT00940000157123 #26 ENSGT00940000159770 #27 ENSGT00940000154018.b #28 ENSGT00390000006412 #29 ENSGT00390000014900.b.b.a #31 ENSGT00940000164009 #32 ENSGT00390000016820 #33 ENSGT00390000012561.a #34 ENSGT00940000157010 #35 ENSGT00530000063273.b.a.b.a.b #36 ENSGT00940000154486.b.a.b #37 ENSGT00950000182856.a.a.a Hystricomorpha_a ANCESTRAL SPECIES 41 ENSGT00550000074907 ENSGT00390000011863.d #7 ENSGT01070000253775.a.d.a.a.a.a #8 ENSGT00510000047522 #9 ENSGT01070000253775.a.d.a.a.a.b #10 ENSGT00550000074844 #11 ENSGT00940000156003 #12 ENSGT00940000155419 #13 ENSGT00940000154738.a #14 ENSGT00940000162392 #16 ENSGT00940000156246 #17 ENSGT00550000075044 #19 ENSGT00940000160513 #18 ENSGT00940000155659 #20 ENSGT00390000010852 #21 ENSGT00390000013347.a #22 ENSGT00390000010292 #23 ENSGT00940000159083 #24 ENSGT00940000154546 #25 ENSGT00940000157123 #26 ENSGT00940000159770 #27 ENSGT00940000154018.b #28 ENSGT00390000006412 #29 ENSGT00390000014900.b.b.a #31 ENSGT00940000153289.a.b ENSGT00390000016820 #33 ENSGT00390000012561.a #34 ENSGT00940000157010 #35 ENSGT00530000063273.b.a.b.a.b #36 ENSGT00940000154486.b.a.b #37 ENSGT00950000182856.a.a.a Guinea pig MODERN SPECIES 31 BCAP29 (ENSCPOG00000002386) #7 SLC26A4 (ENSCPOG00000002391) #8 CBLL1 (ENSCPOG00000006196) #9 SLC26A3 (ENSCPOG00000014568) #10 ENSCPOG00000005312 #11 LAMB1 (ENSCPOG00000013175) #12 NRCAM (ENSCPOG00000006412) #13 PNPLA8 (ENSCPOG00000007525) #14 ENSCPOG00000024304 #15 THAP5 (ENSCPOG00000030486) #16 DNAJB9 (ENSCPOG00000038956) #17 LRRN3 (ENSCPOG00000006634) #18 IMMP2L (ENSCPOG00000008217) #19 DOCK4 (ENSCPOG00000012432) #20 ZNF277 (ENSCPOG00000024990) #21 IFRD1 (ENSCPOG00000004793) #22 LSMEM1 (ENSCPOG00000004797) #23 SCIN (ENSCPOG00000005589) #24 ARL4A (ENSCPOG00000000543) #25 ETV1 (ENSCPOG00000004289) #26 ENSCPOG00000003805 #27 MEOX2 (ENSCPOG00000026227) #28 CRPPA (ENSCPOG00000023248) #29 ENSCPOG00000000910 #30 SOSTDC1 (ENSCPOG00000034288) #31 ENSCPOG00000011510 #32 ANKMY2 (ENSCPOG00000011512) #33 BZW2 (ENSCPOG00000011515) #34 TSPAN13 (ENSCPOG00000034690) #35 AGR2 (ENSCPOG00000000018) #36 AHR (ENSCPOG00000005481) #37 Hystricomorpha_b ANCESTRAL SPECIES 39 ENSGT00550000074907 ENSGT00390000011863.d #7 ENSGT01070000253775.a.d.a.a.a.a #8 ENSGT00510000047522 #9 ENSGT01070000253775.a.d.a.a.a.b #10 ENSGT00550000074844 #11 ENSGT00940000156003 #12 ENSGT00940000155419 #13 ENSGT00940000154738.a #14 ENSGT00940000162392 #16 ENSGT00940000156246 #17 ENSGT00550000075044 #19 ENSGT00940000160513 #18 ENSGT00940000155659 #20 ENSGT00390000010852 #21 ENSGT00390000013347.a #22 ENSGT00390000010292 #23 ENSGT00940000159083 #24 ENSGT00940000154546 #25 ENSGT00940000157123 #26 ENSGT00940000159770 #27 ENSGT00940000154018.b #28 ENSGT00390000006412 #29 ENSGT00390000014900.b.b.a #31 ENSGT00940000153289.a.b ENSGT00390000016820 #33 ENSGT00390000012561.a #34 ENSGT00940000157010 #35 ENSGT00530000063273.b.a.b.a.b #36 ENSGT00940000154486.b.a.b #37 ENSGT00950000182856.a.a.a Long-tailed chinchilla DUPLICATION Long-tailed chinchilla MODERN SPECIES 117 DUS4L (ENSCLAG00000012135) BCAP29 (ENSCLAG00000014204) #7 SLC26A4 (ENSCLAG00000016035) #8 CBLL1 (ENSCLAG00000006401) #9 SLC26A3 (ENSCLAG00000006307) #10 DLD (ENSCLAG00000006284) #11 LAMB1 (ENSCLAG00000008304) #12 NRCAM (ENSCLAG00000005448) #13 PNPLA8 (ENSCLAG00000014342) #14 THAP5 (ENSCLAG00000004720) #16 DNAJB9 (ENSCLAG00000005011) #17 IMMP2L (ENSCLAG00000005360) #19 LRRN3 (ENSCLAG00000009146) #18 DOCK4 (ENSCLAG00000014437) #20 ZNF277 (ENSCLAG00000006282) #21 ENSCLAG00000004463 #22 LSMEM1 (ENSCLAG00000005373) #23 ENSCLAG00000006855 SCIN (ENSCLAG00000004560) #24 ENSCLAG00000006259 #25 ETV1 (ENSCLAG00000007240) #26 DGKB (ENSCLAG00000011522) #27 MEOX2 (ENSCLAG00000007831) #28 CRPPA (ENSCLAG00000008000) #29 SOSTDC1 (ENSCLAG00000009096) #31 ENSCLAG00000010495 #32 ANKMY2 (ENSCLAG00000010313) #33 BZW2 (ENSCLAG00000011809) #34 TSPAN13 (ENSCLAG00000012606) #35 AGR2 (ENSCLAG00000005464) #36 AHR (ENSCLAG00000005612) #37 Long-tailed chinchilla MODERN SPECIES 138 DCLK1 (ENSCLAG00000006827) SOHLH2 (ENSCLAG00000005516) CCDC169 (ENSCLAG00000005286) SPART (ENSCLAG00000005026) CCNA1 (ENSCLAG00000004772) RFXAP (ENSCLAG00000005593) ENSCLAG00000004108 ALG5 (ENSCLAG00000003827) EXOSC8 (ENSCLAG00000003456) SUPT20H (ENSCLAG00000006314) POSTN (ENSCLAG00000005084) TRPC4 (ENSCLAG00000010452) ENSCLAG00000013090 FREM2 (ENSCLAG00000012778) STOML3 (ENSCLAG00000013188) ENSCLAG00000012047 #22 PROSER1 (ENSCLAG00000011789) NHLRC3 (ENSCLAG00000005695) LHFPL6 (ENSCLAG00000005663) COG6 (ENSCLAG00000003992) ENSCLAG00000003491 MRPS31 (ENSCLAG00000003239) SLC25A15 (ENSCLAG00000004865) ENSCLAG00000004354 THSD1 (ENSCLAG00000003704) VPS36 (ENSCLAG00000003373) CKAP2 (ENSCLAG00000003075) NEK3 (ENSCLAG00000006532) ENSCLAG00000006001 ALG11 (ENSCLAG00000005320) ATP7B (ENSCLAG00000004851) Degu MODERN SPECIES 56 ENSODEG00000005469 ENSODEG00000006088 HOOK1 (ENSODEG00000006209) ENSODEG00000019295 ENSODEG00000006014 ENSODEG00000019200 ENSODEG00000005894 ENSODEG00000006131 DOCK4 (ENSODEG00000007577) #20 ZNF277 (ENSODEG00000006915) #21 ENSODEG00000006142 IFRD1 (ENSODEG00000005935) #22 LSMEM1 (ENSODEG00000006808) #23 SCIN (ENSODEG00000006899) #24 ENSODEG00000006469 #25 ENSODEG00000006884 ENSODEG00000006445 ETV1 (ENSODEG00000009379) #26 ENSODEG00000019257 DGKB (ENSODEG00000006018) #27 MEOX2 (ENSODEG00000006924) #28 CRPPA (ENSODEG00000007022) #29 ENSODEG00000005934 SOSTDC1 (ENSODEG00000005958) #31 LRRC72 (ENSODEG00000006632) ANKMY2 (ENSODEG00000008716) #33 BZW2 (ENSODEG00000007505) #34 Naked mole-rat female DUPLICATION Naked mole-rat female MODERN SPECIES 5 ENSHGLG00000048059 NRCAM (ENSHGLG00000006695) #13 ENSHGLG00000016141 #14 ENSHGLG00000047483 THAP5 (ENSHGLG00000040131) #16 DNAJB9 (ENSHGLG00000036548) #17 ENSHGLG00000040202 ENSHGLG00000044477 ENSHGLG00000037470 LRRN3 (ENSHGLG00000045388) #18 ENSHGLG00000048809 IMMP2L (ENSHGLG00000007468) #19 DOCK4 (ENSHGLG00000014862) #20 ENSHGLG00000016417 #21 ENSHGLG00000038287 ENSHGLG00000012865 #22 ENSHGLG00000018338 #23 ENSHGLG00000008880 #24 ARL4A (ENSHGLG00000042225) #25 ETV1 (ENSHGLG00000018987) #26 DGKB (ENSHGLG00000010546) #27 MEOX2 (ENSHGLG00000007586) #28 ENSHGLG00000035563 ENSHGLG00000043657 CRPPA (ENSHGLG00000050477) #29 SOSTDC1 (ENSHGLG00000011339) #31 ENSHGLG00000041144 ENSHGLG00000009473 #32 ANKMY2 (ENSHGLG00000037184) #33 BZW2 (ENSHGLG00000011038) #34 AGR2 (ENSHGLG00000042591) #36 Naked mole-rat female MODERN SPECIES 11 ENSHGLG00000040429 ENSHGLG00000019549 ENSHGLG00000000611 ENSHGLG00000016363 FANCM (ENSHGLG00000013787) ENSHGLG00000012727 FKBP3 (ENSHGLG00000012484) ENSHGLG00000012015 ENSHGLG00000036376 TOGARAM1 (ENSHGLG00000014098) KLHL28 (ENSHGLG00000045138) ENSHGLG00000009782 ENSHGLG00000010277 ENSHGLG00000047147 ENSHGLG00000044527 ENSHGLG00000049118 #22 ENSHGLG00000013709 LRFN5 (ENSHGLG00000001601) ENSHGLG00000039345 ENSHGLG00000038712 ENSHGLG00000033347 ENSHGLG00000044414 ENSHGLG00000019895 ENSHGLG00000046212 ENSHGLG00000001513 ENSHGLG00000001136 PNN (ENSHGLG00000035633) ENSHGLG00000005003 ENSHGLG00000005276 ENSHGLG00000004890 ENSHGLG00000004530 Sciuridae ANCESTRAL SPECIES 7 ENSGT00390000011863.d #7 ENSGT01070000253775.a.d.a.a.a.a #8 ENSGT00510000047522 #9 ENSGT01070000253775.a.d.a.a.a.b #10 ENSGT00550000074844 #11 ENSGT00940000156003 #12 ENSGT00940000162514 ENSGT00940000155419 #13 ENSGT00940000154738.a #14 ENSGT00940000162392 #16 ENSGT00940000156246 #17 ENSGT00550000075044 #19 ENSGT00940000160513 #18 ENSGT00940000155659 #20 ENSGT00390000010852 #21 ENSGT00390000013347.a #22 ENSGT00390000010292 #23 ENSGT00940000159083 #24 ENSGT00940000154546 #25 ENSGT00940000157123 #26 ENSGT00940000159770 #27 ENSGT00440000033807 ENSGT00940000154018.b #28 ENSGT00390000006412 #29 ENSGT00910000147441 ENSGT00390000014900.b.b.a #31 ENSGT00940000153289.a.b ENSGT00390000016820 #33 ENSGT00390000012561.a #34 ENSGT00940000157010 #35 ENSGT00530000063273.b.a.b.a.b #36 Marmotini ANCESTRAL SPECIES 84 ENSGT01030000234595.B.c.b ENSGT00940000154983.c.b ENSGT00940000155419 #13 ENSGT00940000154738.a #14 ENSGT00940000162392 #16 ENSGT00940000156246 #17 ENSGT00550000075044 #19 ENSGT00940000160513 #18 ENSGT00940000155659 #20 ENSGT00390000010852 #21 ENSGT00390000013347.a #22 ENSGT00390000010292 #23 ENSGT00940000159083 #24 ENSGT00940000154546 #25 ENSGT00940000157123 #26 ENSGT00940000159770 #27 ENSGT00440000033807 ENSGT00940000154018.b #28 ENSGT00390000006412 #29 ENSGT00910000147441 ENSGT00390000014900.b.b.a #31 ENSGT00940000153289.a.b ENSGT00390000016820 #33 ENSGT00390000012561.a #34 ENSGT00940000157010 #35 ENSGT00530000063273.b.a.b.a.b #36 Marmotini_b ANCESTRAL SPECIES 125 ENSGT01030000234595.B.c.b ENSGT00940000154983.c.b ENSGT00940000155419 #13 ENSGT00940000154738.a #14 ENSGT00940000162392 #16 ENSGT00940000156246 #17 ENSGT00940000160513 #18 ENSGT00550000075044 #19 ENSGT00940000155659 #20 ENSGT00390000010852 #21 ENSGT00390000013347.a #22 ENSGT00390000010292 #23 ENSGT00940000159083 #24 ENSGT00940000154546 #25 ENSGT00940000157123 #26 ENSGT00940000159770 #27 ENSGT00440000033807 ENSGT00940000154018.b #28 ENSGT00390000006412 #29 ENSGT00910000147441 ENSGT00390000014900.b.b.a #31 ENSGT00940000153289.a.b ENSGT00390000016820 #33 ENSGT00390000012561.a #34 ENSGT00940000157010 #35 ENSGT00530000063273.b.a.b.a.b #36 Squirrel MODERN SPECIES 395 DOCK4 (ENSSTOG00000009674) #20 ZNF277 (ENSSTOG00000003727) #21 IFRD1 (ENSSTOG00000010658) #22 LSMEM1 (ENSSTOG00000010667) #23 SCIN (ENSSTOG00000011432) #24 ARL4A (ENSSTOG00000005161) #25 Arctic ground squirrel MODERN SPECIES 13 NRCAM (ENSUPAG00010011185) #13 PNPLA8 (ENSUPAG00010011232) #14 THAP5 (ENSUPAG00010011273) #16 DNAJB9 (ENSUPAG00010011278) #17 IMMP2L (ENSUPAG00010011285) #19 LRRN3 (ENSUPAG00010011299) #18 DOCK4 (ENSUPAG00010011313) #20 ZNF277 (ENSUPAG00010011439) #21 IFRD1 (ENSUPAG00010011471) #22 LSMEM1 (ENSUPAG00010011487) #23 SCIN (ENSUPAG00010011491) #24 ARL4A (ENSUPAG00010011555) #25 ETV1 (ENSUPAG00010011574) #26 ENSUPAG00010012038 DGKB (ENSUPAG00010012054) #27 AGMO (ENSUPAG00010012153) MEOX2 (ENSUPAG00010012171) #28 CRPPA (ENSUPAG00010012180) #29 ENSUPAG00010012254 SOSTDC1 (ENSUPAG00010012255) #31 ENSUPAG00010012260 #32 ANKMY2 (ENSUPAG00010012270) #33 BZW2 (ENSUPAG00010012281) #34 TSPAN13 (ENSUPAG00010012320) #35 Alpin marmot MODERN SPECIES 51 GRM3 (ENSMMMG00000013459) ELAPOR2 (ENSMMMG00000013464) ENSMMMG00000013532 NRCAM (ENSMMMG00000013544) #13 PNPLA8 (ENSMMMG00000013634) #14 THAP5 (ENSMMMG00000013685) #16 DNAJB9 (ENSMMMG00000013686) #17 IMMP2L (ENSMMMG00000013704) #19 LRRN3 (ENSMMMG00000013726) #18 DOCK4 (ENSMMMG00000013747) #20 ZNF277 (ENSMMMG00000013906) #21 IFRD1 (ENSMMMG00000013925) #22 LSMEM1 (ENSMMMG00000013941) #23 SCIN (ENSMMMG00000013945) #24 ARL4A (ENSMMMG00000013991) #25 ENSMMMG00000013997 ETV1 (ENSMMMG00000014020) #26 ENSMMMG00000014863 DGKB (ENSMMMG00000014873) #27 AGMO (ENSMMMG00000014935) MEOX2 (ENSMMMG00000014951) #28 CRPPA (ENSMMMG00000014965) #29 ENSMMMG00000015015 SOSTDC1 (ENSMMMG00000015016) #31 ENSMMMG00000015021 ENSMMMG00000015026 ANKMY2 (ENSMMMG00000015031) #33 Eurasian red squirrel DUPLICATION Eurasian red squirrel MODERN SPECIES 17 NRCAM (ENSSVLG00005025152) #13 ENSSVLG00005025420 PNPLA8 (ENSSVLG00005008056) #14 ENSSVLG00005008198 #16 ENSSVLG00005008263 #17 ENSSVLG00005008283 #16 ENSSVLG00005008300 #17 ENSSVLG00005008328 ENSSVLG00005008362 ENSSVLG00005008384 ENSSVLG00005008420 IMMP2L (ENSSVLG00005008446) #19 LRRN3 (ENSSVLG00005008467) #18 DOCK4 (ENSSVLG00005008577) #20 ENSSVLG00005009041 #21 ENSSVLG00005009212 #22 LSMEM1 (ENSSVLG00005009368) #23 SCIN (ENSSVLG00005009396) #24 ENSSVLG00005009426 #25 ENSSVLG00005009439 ETV1 (ENSSVLG00005009551) #26 DGKB (ENSSVLG00005009910) #27 AGMO (ENSSVLG00005010508) MEOX2 (ENSSVLG00005010613) #28 CRPPA (ENSSVLG00005010656) #29 SOSTDC1 (ENSSVLG00005010707) #31 ENSSVLG00005010779 LRRC72 (ENSSVLG00005010848) ANKMY2 (ENSSVLG00005010918) #33 ENSSVLG00005010991 #34 TSPAN13 (ENSSVLG00005011334) #35 Eurasian red squirrel MODERN SPECIES 15 SLC35A4 (ENSSVLG00005022047) ENSSVLG00005022063 APBB3 (ENSSVLG00005022127) SRA1 (ENSSVLG00005022207) EIF4EBP3 (ENSSVLG00005022238) ANKHD1 (ENSSVLG00005022311) SLC4A9 (ENSSVLG00005022479) HBEGF (ENSSVLG00005022906) PFDN1 (ENSSVLG00005022935) CYSTM1 (ENSSVLG00005022955) IGIP (ENSSVLG00005022977) PURA (ENSSVLG00005022991) NRG2 (ENSSVLG00005023050) PSD2 (ENSSVLG00005023287) ENSSVLG00005023435 ENSSVLG00005011040 #22 STING1 (ENSSVLG00005011094) SMIM33 (ENSSVLG00005011228) ENSSVLG00005011279 DNAJC18 (ENSSVLG00005011344) SPATA24 (ENSSVLG00005011391) MZB1 (ENSSVLG00005011633) SLC23A1 (ENSSVLG00005011703) PAIP2 (ENSSVLG00005011894) MATR3 (ENSSVLG00005011966) SIL1 (ENSSVLG00005012349) ENSSVLG00005012433 ENSSVLG00005012481 ENSSVLG00005012517 ENSSVLG00005012588 ENSSVLG00005012813 Rodentia_B ANCESTRAL SPECIES 9 ENSGT00550000074907 ENSGT00390000011863.d #7 ENSGT01070000253775.a.d.a.a.a.a #8 ENSGT00950000186265 ENSGT00510000047522 #9 ENSGT01070000253775.a.d.a.a.a.b #10 ENSGT00550000074844 #11 ENSGT00940000156003 #12 ENSGT00940000155419 #13 ENSGT00940000154738.a #14 ENSGT00940000156246 #17 ENSGT00940000160513 #18 ENSGT00550000075044 #19 ENSGT00940000155659 #20 ENSGT00390000010852 #21 ENSGT00390000013347.a #22 ENSGT00390000010292 #23 ENSGT00940000159083 #24 ENSGT00940000154546 #25 ENSGT00940000157123 #26 ENSGT00940000159770 #27 ENSGT00440000033807 ENSGT00940000154018.b #28 ENSGT00390000006412 #29 ENSGT00390000014900.b.b.a #31 ENSGT00940000164009 #32 ENSGT00390000016820 #33 ENSGT00390000012561.a #34 ENSGT00940000157010 #35 ENSGT00530000063273.b.a.b.a.b #36 ENSGT00530000063273.b.a.b.a.a ##36 Myomorpha ANCESTRAL SPECIES 8 ENSGT00550000074907 ENSGT00390000011863.d #7 ENSGT01070000253775.a.d.a.a.a.a #8 ENSGT00950000186265 ENSGT00510000047522 #9 ENSGT01070000253775.a.d.a.a.a.b #10 ENSGT00550000074844 #11 ENSGT00940000156003 #12 ENSGT00940000155419 #13 ENSGT00940000154738.a #14 ENSGT00940000156246 #17 ENSGT00940000160513 #18 ENSGT00550000075044 #19 ENSGT00940000155659 #20 ENSGT00390000010852 #21 ENSGT00390000013347.a #22 ENSGT00390000010292 #23 ENSGT00940000159083 #24 ENSGT00940000154546 #25 ENSGT00940000157123 #26 ENSGT00940000159770 #27 ENSGT00440000033807 ENSGT00940000154018.b #28 ENSGT00390000006412 #29 ENSGT00390000014900.b.b.a #31 ENSGT00940000164009 #32 ENSGT00390000016820 #33 ENSGT00390000012561.a #34 ENSGT00940000157010 #35 ENSGT00530000063273.b.a.b.a.b #36 ENSGT00530000063273.b.a.b.a.a ##36 Muroidea ANCESTRAL SPECIES 8 ENSGT00550000074907 ENSGT00390000011863.d #7 ENSGT01070000253775.a.d.a.a.a.a #8 ENSGT00950000186265 ENSGT00510000047522 #9 ENSGT01070000253775.a.d.a.a.a.b #10 ENSGT00550000074844 #11 ENSGT00940000156003 #12 ENSGT00940000155419 #13 ENSGT00940000154738.a #14 ENSGT00940000156246 #17 ENSGT00940000160513 #18 ENSGT00550000075044 #19 ENSGT00940000155659 #20 ENSGT00390000010852 #21 ENSGT00390000013347.a #22 ENSGT00390000010292 #23 ENSGT00940000159083 #24 ENSGT00940000154546 #25 ENSGT00940000157123 #26 ENSGT00940000159770 #27 ENSGT00440000033807 ENSGT00940000154018.b #28 ENSGT00390000006412 #29 ENSGT00390000014900.b.b.a #31 ENSGT00940000164009 #32 ENSGT00390000016820 #33 ENSGT00390000012561.a #34 ENSGT00940000157010 #35 ENSGT00530000063273.b.a.b.a.b #36 ENSGT00530000063273.b.a.b.a.a ##36 Muroidea_A ANCESTRAL SPECIES 15 ENSGT00940000159386 ENSGT00550000074845 ENSGT00950000182865.b.a.a ENSGT00950000183024.a.b.a ENSGT00940000160678.a ENSGT00940000155573 ENSGT00940000156499 ENSGT00940000155419 #13 ENSGT00940000154738.a #14 ENSGT00940000156246 #17 ENSGT00940000160513 #18 ENSGT00550000075044 #19 ENSGT00940000155659 #20 ENSGT00390000010852 #21 ENSGT00900000143184 ENSGT00390000013347.a #22 ENSGT00390000010292 #23 ENSGT00940000159083 #24 ENSGT00940000154546 #25 ENSGT00940000157123 #26 ENSGT00940000159770 #27 ENSGT00440000033807 ENSGT00940000154018.b #28 ENSGT00390000006412 #29 ENSGT00390000014900.b.b.a #31 ENSGT00940000164009 #32 ENSGT00390000016820 #33 ENSGT00390000012561.a #34 ENSGT00940000157010 #35 ENSGT00530000063273.b.a.b.a.b #36 ENSGT00530000063273.b.a.b.a.a ##36 Cricetidae ANCESTRAL SPECIES 17 ENSGT00940000159386 ENSGT00550000074845 ENSGT00950000182865.b.a.a ENSGT00950000183024.a.b.a ENSGT00940000160678.a ENSGT00940000155573 ENSGT00940000156499 ENSGT00940000155419 #13 ENSGT00940000154738.a #14 ENSGT00940000156246 #17 ENSGT00940000164174 ENSGT00940000160513 #18 ENSGT00940000155659 #20 ENSGT00390000010852 #21 ENSGT00900000143184 ENSGT00390000013347.a #22 ENSGT00390000010292 #23 ENSGT00940000159083 #24 ENSGT00940000154546 #25 ENSGT00940000157123 #26 ENSGT00940000159770 #27 ENSGT00440000033807 ENSGT00940000154018.b #28 ENSGT00390000006412 #29 ENSGT00390000014900.b.b.a #31 ENSGT00940000164009 #32 ENSGT00390000016820 #33 ENSGT00390000012561.a #34 ENSGT00940000157010 #35 ENSGT00530000063273.b.a.b.a.b #36 ENSGT00530000063273.b.a.b.a.a ##36 Cricetidae_B ANCESTRAL SPECIES 44 ENSGT00950000183095.a.a ENSGT00940000159386 ENSGT00550000074845 ENSGT00950000182865.b.a.a ENSGT00950000183024.a.b.a ENSGT00940000160678.a ENSGT00940000155573 ENSGT00940000156499 ENSGT00940000155419 #13 ENSGT00940000154738.a #14 ENSGT00940000156246 #17 ENSGT00550000075044 #19 ENSGT00940000160513 #18 ENSGT00940000155659 #20 ENSGT00390000010852 #21 ENSGT00390000013347.a #22 ENSGT00390000010292 #23 ENSGT00940000159083 #24 ENSGT00940000154546 #25 ENSGT00940000157123 #26 ENSGT00940000159770 #27 ENSGT00440000033807 ENSGT00940000154018.b #28 ENSGT00390000006412 #29 ENSGT00390000014900.b.b.a #31 ENSGT00940000164009 #32 ENSGT00390000016820 #33 ENSGT00390000012561.a #34 ENSGT00940000157010 #35 ENSGT00530000063273.b.a.b.a.b #36 ENSGT00530000063273.b.a.b.a.a ##36 Northern American deer mouse MODERN SPECIES 5 ENSPEMG00000011512 Foxg1 (ENSPEMG00000014163) Nova1 (ENSPEMG00000006503) Stxbp6 (ENSPEMG00000006826) ENSPEMG00000008750 Nrcam (ENSPEMG00000000666) #13 Pnpla8 (ENSPEMG00000013308) #14 Dnajb9 (ENSPEMG00000025224) #17 ENSPEMG00000030494 ENSPEMG00000000820 Immp2l (ENSPEMG00000017740) #19 Lrrn3 (ENSPEMG00000013198) #18 Dock4 (ENSPEMG00000011461) #20 Zfp277 (ENSPEMG00000016665) #21 ENSPEMG00000025333 Ifrd1 (ENSPEMG00000000131) #22 Lsmem1 (ENSPEMG00000026633) #23 Scin (ENSPEMG00000000931) #24 Arl4a (ENSPEMG00000029611) #25 ENSPEMG00000022349 Etv1 (ENSPEMG00000019917) #26 Dgkb (ENSPEMG00000014272) #27 Agmo (ENSPEMG00000000373) Meox2 (ENSPEMG00000016173) #28 ENSPEMG00000028429 ENSPEMG00000029044 Crppa (ENSPEMG00000019928) #29 Sostdc1 (ENSPEMG00000024450) #31 Lrrc72 (ENSPEMG00000019796) #32 Ankmy2 (ENSPEMG00000019745) #33 ENSPEMG00000028328 Prairie vole MODERN SPECIES Scfd1 (ENSMOCG00000017239) G2e3 (ENSMOCG00000012420) Prkd1 (ENSMOCG00000021339) Foxg1 (ENSMOCG00000008016) ENSMOCG00000007728 Nova1 (ENSMOCG00000006277) Stxbp6 (ENSMOCG00000008146) Nrcam (ENSMOCG00000016008) #13 Pnpla8 (ENSMOCG00000017091) #14 Dnajb9 (ENSMOCG00000005620) #17 ENSMOCG00000013184 Immp2l (ENSMOCG00000018275) #19 Lrrn3 (ENSMOCG00000002674) #18 Dock4 (ENSMOCG00000001161) #20 Zfp277 (ENSMOCG00000017178) #21 Ifrd1 (ENSMOCG00000021204) #22 Lsmem1 (ENSMOCG00000003353) #23 Scin (ENSMOCG00000016209) #24 Arl4a (ENSMOCG00000019911) #25 Etv1 (ENSMOCG00000008553) #26 Dgkb (ENSMOCG00000005546) #27 ENSMOCG00000007404 Agmo (ENSMOCG00000011222) Meox2 (ENSMOCG00000017187) #28 Crppa (ENSMOCG00000010683) #29 Sostdc1 (ENSMOCG00000003725) #31 ENSMOCG00000004617 #32 Ankmy2 (ENSMOCG00000015950) #33 Bzw2 (ENSMOCG00000020705) #34 Tspan13 (ENSMOCG00000010667) #35 Agr2 (ENSMOCG00000013251) #36 Cricetinae ANCESTRAL SPECIES 11 ENSGT00940000159386 ENSGT00550000074845 ENSGT00950000182865.b.a.a ENSGT00950000183024.a.b.a ENSGT00940000160678.a ENSGT00940000155573 ENSGT00940000156499 ENSGT00940000155419 #13 ENSGT00940000154738.a #14 ENSGT00940000156246 #17 ENSGT00550000075044 #19 ENSGT00940000160513 #18 ENSGT00940000155659 #20 ENSGT00390000010852 #21 ENSGT00900000143184 ENSGT00390000013347.a #22 ENSGT00390000010292 #23 ENSGT00940000159083 #24 ENSGT00940000154546 #25 ENSGT00940000157123 #26 ENSGT00940000159770 #27 ENSGT00440000033807 ENSGT00940000154018.b #28 ENSGT00390000006412 #29 ENSGT00390000014900.b.b.a #31 ENSGT00940000164009 #32 ENSGT00390000016820 #33 ENSGT00390000012561.a #34 ENSGT00940000157010 #35 ENSGT00530000063273.b.a.b.a.b #36 ENSGT00530000063273.b.a.b.a.a ##36 Chinese hamster chok1gshd MODERN SPECIES 2 Prkd1 (ENSCGRG00001019739) Foxg1 (ENSCGRG00001009864) ENSCGRG00001023108 Nova1 (ENSCGRG00001024030) ENSCGRG00001015898 Stxbp6 (ENSCGRG00001016560) ENSCGRG00001015987 Nrcam (ENSCGRG00001023691) #13 Pnpla8 (ENSCGRG00001002943) #14 DNAJB9 (ENSCGRG00001006614) #17 ENSCGRG00001009365 Immp2l (ENSCGRG00001013717) #19 Lrrn3 (ENSCGRG00001010451) #18 Dock4 (ENSCGRG00001024824) #20 Zfp277 (ENSCGRG00001022696) #21 Ifrd1 (ENSCGRG00001023172) #22 ENSCGRG00001023478 Lsmem1 (ENSCGRG00001024872) #23 Scin (ENSCGRG00001000973) #24 Arl4a (ENSCGRG00001004637) #25 ENSCGRG00001006054 Etv1 (ENSCGRG00001002069) #26 Dgkb (ENSCGRG00001011791) #27 Agmo (ENSCGRG00001017658) Meox2 (ENSCGRG00001005953) #28 Crppa (ENSCGRG00001009392) #29 Sostdc1 (ENSCGRG00001011682) #31 ENSCGRG00001020084 #32 Ankmy2 (ENSCGRG00001009172) #33 ENSCGRG00001013113 #34 Tspan13 (ENSCGRG00001023940) #35 Golden Hamster MODERN SPECIES 677 Cbfb (ENSMAUG00000017365) Phaf1 (ENSMAUG00000000635) B3gnt9 (ENSMAUG00000000090) Tradd (ENSMAUG00000000327) Fbxl8 (ENSMAUG00000018497) Hsf4 (ENSMAUG00000000872) Nol3 (ENSMAUG00000001852) Matcap1 (ENSMAUG00000002709) Exoc3l (ENSMAUG00000000438) ENSMAUG00000001090 ENSMAUG00000003972 Lrrn3 (ENSMAUG00000006396) #18 Dock4 (ENSMAUG00000004565) #20 Zfp277 (ENSMAUG00000009201) #21 ENSMAUG00000012490 Ifrd1 (ENSMAUG00000013118) #22 Lsmem1 (ENSMAUG00000013434) #23 Scin (ENSMAUG00000010111) #24 Arl4a (ENSMAUG00000013648) #25 Etv1 (ENSMAUG00000015439) #26 ENSMAUG00000017823 Dgkb (ENSMAUG00000014209) #27 Agmo (ENSMAUG00000000152) Meox2 (ENSMAUG00000015354) #28 Crppa (ENSMAUG00000014377) #29 Sostdc1 (ENSMAUG00000015477) #31 Lrrc72 (ENSMAUG00000017684) #32 Ankmy2 (ENSMAUG00000019069) #33 Bzw2 (ENSMAUG00000000123) #34 Tspan13 (ENSMAUG00000017648) #35 Agr2 (ENSMAUG00000017131) #36 Murinae ANCESTRAL SPECIES 8 ENSGT00940000159386 ENSGT00550000074845 ENSGT00950000182865.b.a.a ENSGT00950000183024.a.b.a ENSGT00940000160678.a ENSGT00940000155573 ENSGT00940000156499 ENSGT00940000155419 #13 ENSGT00940000154738.a #14 ENSGT00940000156246 #17 ENSGT00940000160513 #18 ENSGT00550000075044 #19 ENSGT00940000155659 #20 ENSGT00390000010852 #21 ENSGT00900000143184 ENSGT00390000013347.a #22 ENSGT00390000010292 #23 ENSGT00940000159083 #24 ENSGT00940000154546 #25 ENSGT00940000157123 #26 ENSGT00940000159770 #27 ENSGT00440000033807 ENSGT00940000154018.b #28 ENSGT00390000006412 #29 ENSGT00860000136114 ENSGT00390000014900.b.b.a #31 ENSGT00940000164009 #32 ENSGT00390000016820 #33 ENSGT00390000012561.a #34 ENSGT00940000157010 #35 ENSGT00530000063273.b.a.b.a.b #36 Mus ANCESTRAL SPECIES 10 ENSGT00940000159386 ENSGT00550000074845 ENSGT00950000182865.b.a.a ENSGT00950000183024.a.b.a ENSGT00940000160678.a ENSGT00940000155573 ENSGT00940000156499 ENSGT00940000155419 #13 ENSGT00940000154738.a #14 ENSGT00940000156246 #17 ENSGT00940000160513 #18 ENSGT00550000075044 #19 ENSGT00940000155659 #20 ENSGT00390000010852 #21 ENSGT00900000143184 ENSGT00390000013347.a #22 ENSGT00390000010292 #23 ENSGT00940000159083 #24 ENSGT00940000154546 #25 ENSGT00940000157123 #26 ENSGT00940000159770 #27 ENSGT00440000033807 ENSGT00940000154018.b #28 ENSGT00390000006412 #29 ENSGT00860000136114 ENSGT00390000014900.b.b.a #31 ENSGT00940000164009 #32 ENSGT00390000016820 #33 ENSGT00390000012561.a #34 ENSGT00940000157010 #35 ENSGT00530000063273.b.a.b.a.b #36 Mus_A ANCESTRAL SPECIES 17 ENSGT00550000074845 ENSGT00950000182865.b.a.a ENSGT00950000183024.a.b.a ENSGT01100000267143 ENSGT00940000160678.a ENSGT00940000155573 ENSGT00940000156499 ENSGT00940000155419 #13 ENSGT00940000154738.a #14 ENSGT00940000156246 #17 ENSGT00940000160513 #18 ENSGT00550000075044 #19 ENSGT00940000155659 #20 ENSGT00390000010852 #21 ENSGT00900000143184 ENSGT00390000013347.a #22 ENSGT00390000010292 #23 ENSGT00940000159083 #24 ENSGT00940000154546 #25 ENSGT00940000157123 #26 ENSGT00940000159770 #27 ENSGT00440000033807 ENSGT00940000154018.b #28 ENSGT00390000006412 #29 ENSGT00860000136114 ENSGT00390000014900.b.b.a #31 ENSGT00940000164009 #32 ENSGT00390000016820 #33 ENSGT00390000012561.a #34 ENSGT00940000157010 #35 ENSGT00530000063273.b.a.b.a.b #36 Mus_B ANCESTRAL SPECIES 17 ENSGT00550000074845 ENSGT00950000182865.b.a.a ENSGT00950000183024.a.b.a ENSGT01100000267143 ENSGT00940000160678.a ENSGT00940000155573 ENSGT00940000156499 ENSGT00940000155419 #13 ENSGT00940000154738.a #14 ENSGT00940000156246 #17 ENSGT00940000160513 #18 ENSGT00550000075044 #19 ENSGT00940000155659 #20 ENSGT00390000010852 #21 ENSGT00900000143184 ENSGT00390000013347.a #22 ENSGT00390000010292 #23 ENSGT00940000159083 #24 ENSGT00940000154546 #25 ENSGT00940000157123 #26 ENSGT00940000159770 #27 ENSGT00440000033807 ENSGT00940000154018.b #28 ENSGT00390000006412 #29 ENSGT00860000136114 ENSGT00390000014900.b.b.a #31 ENSGT00940000164009 #32 ENSGT00390000016820 #33 ENSGT00390000012561.a #34 ENSGT00940000157010 #35 ENSGT00530000063273.b.a.b.a.b #36 Mus_C ANCESTRAL SPECIES 11 ENSGT00550000074845 ENSGT00950000182865.b.a.a ENSGT00950000183024.a.b.a ENSGT01100000267143 ENSGT00940000160678.a ENSGT00940000155573 ENSGT00940000156499 ENSGT00940000155419 #13 ENSGT00940000154738.a #14 ENSGT00940000156246 #17 ENSGT00940000160513 #18 ENSGT00550000075044 #19 ENSGT00940000155659 #20 ENSGT00390000010852 #21 ENSGT00900000143184 ENSGT00390000013347.a #22 ENSGT00390000010292 #23 ENSGT00940000159083 #24 ENSGT00940000154546 #25 ENSGT00940000157123 #26 ENSGT00940000159770 #27 ENSGT00440000033807 ENSGT00940000154018.b #28 ENSGT00390000006412 #29 ENSGT00860000136114 ENSGT00390000014900.b.b.a #31 ENSGT00940000164009 #32 ENSGT00390000016820 #33 ENSGT00390000012561.a #34 ENSGT00940000157010 #35 ENSGT00530000063273.b.a.b.a.b #36 spretus MODERN SPECIES 3 MGP_SPRETEiJ_G0018575 MGP_SPRETEiJ_G0018574 Foxg1 (MGP_SPRETEiJ_G0018573) MGP_SPRETEiJ_G0018572 MGP_SPRETEiJ_G0018571 Nova1 (MGP_SPRETEiJ_G0018570) Stxbp6 (MGP_SPRETEiJ_G0018569) Nrcam (MGP_SPRETEiJ_G0018568) #13 Pnpla8 (MGP_SPRETEiJ_G0018567) #14 Dnajb9 (MGP_SPRETEiJ_G0018566) #17 Lrrn3 (MGP_SPRETEiJ_G0018565) #18 Immp2l (MGP_SPRETEiJ_G0018564) #19 Dock4 (MGP_SPRETEiJ_G0018563) #20 MGP_SPRETEiJ_G0018562 #21 MGP_SPRETEiJ_G0018561 Ifrd1 (MGP_SPRETEiJ_G0018560) #22 Lsmem1 (MGP_SPRETEiJ_G0018559) #23 Scin (MGP_SPRETEiJ_G0018558) #24 Arl4a (MGP_SPRETEiJ_G0018557) #25 Etv1 (MGP_SPRETEiJ_G0018556) #26 Dgkb (MGP_SPRETEiJ_G0018555) #27 Agmo (MGP_SPRETEiJ_G0018554) Meox2 (MGP_SPRETEiJ_G0018553) #28 Crppa (MGP_SPRETEiJ_G0018552) #29 MGP_SPRETEiJ_G0018551 Sostdc1 (MGP_SPRETEiJ_G0018550) #31 MGP_SPRETEiJ_G0018549 #32 Ankmy2 (MGP_SPRETEiJ_G0018548) #33 Bzw2 (MGP_SPRETEiJ_G0018547) #34 MGP_SPRETEiJ_G0018546 Tspan13 (MGP_SPRETEiJ_G0018545) #35 Steppe mouse MODERN SPECIES 126 ENSMSIG00000001477 Ifrd1 (ENSMSIG00000001485) #22 Lsmem1 (ENSMSIG00000001554) #23 Scin (ENSMSIG00000001583) #24 ENSMSIG00000001716 #25 Mouse MODERN SPECIES 3 Coch (ENSMUSG00000020953) Scfd1 (ENSMUSG00000020952) G2e3 (ENSMUSG00000035293) Prkd1 (ENSMUSG00000002688) Gm43517 (ENSMUSG00000089922) Foxg1 (ENSMUSG00000020950) Nova1 (ENSMUSG00000021047) Stxbp6 (ENSMUSG00000046314) Nrcam (ENSMUSG00000020598) #13 Pnpla8 (ENSMUSG00000036257) #14 Dnajb9 (ENSMUSG00000014905) #17 Lrrn3 (ENSMUSG00000036295) #18 Immp2l (ENSMUSG00000056899) #19 Dock4 (ENSMUSG00000035954) #20 Zfp277 (ENSMUSG00000055917) #21 Ifrd1 (ENSMUSG00000001627) #22 Lsmem1 (ENSMUSG00000071342) #23 Scin (ENSMUSG00000002565) #24 Arl4a (ENSMUSG00000047446) #25 Etv1 (ENSMUSG00000004151) #26 Dgkb (ENSMUSG00000036095) #27 Agmo (ENSMUSG00000050103) Meox2 (ENSMUSG00000036144) #28 Crppa (ENSMUSG00000043153) #29 Sostdc1 (ENSMUSG00000036169) #31 Lrrc72 (ENSMUSG00000020545) #32 Ankmy2 (ENSMUSG00000036188) #33 Bzw2 (ENSMUSG00000020547) #34 Tspan13 (ENSMUSG00000020577) #35 Agr2 (ENSMUSG00000020581) #36 Agr3 (ENSMUSG00000036231) ##36 Ryukyu mouse MODERN SPECIES 3 G2e3 (MGP_CAROLIEiJ_G0017733) Prkd1 (MGP_CAROLIEiJ_G0017732) MGP_CAROLIEiJ_G0017731 MGP_CAROLIEiJ_G0017730 Foxg1 (MGP_CAROLIEiJ_G0017729) Nova1 (MGP_CAROLIEiJ_G0017728) Stxbp6 (MGP_CAROLIEiJ_G0017727) Nrcam (MGP_CAROLIEiJ_G0017726) #13 Pnpla8 (MGP_CAROLIEiJ_G0017725) #14 Dnajb9 (MGP_CAROLIEiJ_G0017724) #17 Lrrn3 (MGP_CAROLIEiJ_G0017723) #18 Immp2l (MGP_CAROLIEiJ_G0017722) #19 Dock4 (MGP_CAROLIEiJ_G0017721) #20 MGP_CAROLIEiJ_G0017720 #21 MGP_CAROLIEiJ_G0017719 Ifrd1 (MGP_CAROLIEiJ_G0017718) #22 Lsmem1 (MGP_CAROLIEiJ_G0017717) #23 Scin (MGP_CAROLIEiJ_G0017716) #24 Arl4a (MGP_CAROLIEiJ_G0017715) #25 Etv1 (MGP_CAROLIEiJ_G0017714) #26 Dgkb (MGP_CAROLIEiJ_G0017713) #27 MGP_CAROLIEiJ_G0017712 Agmo (MGP_CAROLIEiJ_G0017711) Meox2 (MGP_CAROLIEiJ_G0017710) #28 Crppa (MGP_CAROLIEiJ_G0017709) #29 MGP_CAROLIEiJ_G0017708 Sostdc1 (MGP_CAROLIEiJ_G0017707) #31 MGP_CAROLIEiJ_G0017706 #32 Ankmy2 (MGP_CAROLIEiJ_G0017705) #33 Bzw2 (MGP_CAROLIEiJ_G0017704) #34 Tspan13 (MGP_CAROLIEiJ_G0017703) #35 Shrew mouse MODERN SPECIES 20 Scfd1 (MGP_PahariEiJ_G0029490) G2e3 (MGP_PahariEiJ_G0029489) Prkd1 (MGP_PahariEiJ_G0029488) MGP_PahariEiJ_G0029487 Foxg1 (MGP_PahariEiJ_G0029486) Nova1 (MGP_PahariEiJ_G0029485) Stxbp6 (MGP_PahariEiJ_G0029484) Nrcam (MGP_PahariEiJ_G0029483) #13 Pnpla8 (MGP_PahariEiJ_G0029482) #14 Dnajb9 (MGP_PahariEiJ_G0029481) #17 Lrrn3 (MGP_PahariEiJ_G0029480) #18 Immp2l (MGP_PahariEiJ_G0029479) #19 Dock4 (MGP_PahariEiJ_G0029478) #20 MGP_PahariEiJ_G0029477 #21 MGP_PahariEiJ_G0029476 Ifrd1 (MGP_PahariEiJ_G0029475) #22 Lsmem1 (MGP_PahariEiJ_G0029474) #23 Scin (MGP_PahariEiJ_G0029473) #24 Arl4a (MGP_PahariEiJ_G0029472) #25 Etv1 (MGP_PahariEiJ_G0029471) #26 Dgkb (MGP_PahariEiJ_G0029470) #27 Agmo (MGP_PahariEiJ_G0029469) Meox2 (MGP_PahariEiJ_G0029468) #28 Crppa (MGP_PahariEiJ_G0029467) #29 MGP_PahariEiJ_G0029466 Sostdc1 (MGP_PahariEiJ_G0029465) #31 MGP_PahariEiJ_G0029464 #32 Ankmy2 (MGP_PahariEiJ_G0029463) #33 Bzw2 (MGP_PahariEiJ_G0029462) #34 Tspan13 (MGP_PahariEiJ_G0029461) #35 Agr2 (MGP_PahariEiJ_G0029460) #36 Rat MODERN SPECIES 16 Foxg1 (ENSRNOG00000047891) RGD1559629 (ENSRNOG00000031317) ENSRNOG00000068318 Nova1 (ENSRNOG00000031440) Stxbp6 (ENSRNOG00000004198) Nrcam (ENSRNOG00000004067) #13 Pnpla8 (ENSRNOG00000039091) #14 ENSRNOG00000064508 Dnajb9 (ENSRNOG00000004006) #17 Ndufa10l1 (ENSRNOG00000062245) Lrrn3 (ENSRNOG00000006368) #18 Immp2l (ENSRNOG00000067070) #19 Dock4 (ENSRNOG00000004823) #20 Zfp277 (ENSRNOG00000045854) #21 ENSRNOG00000069784 Ifrd1 (ENSRNOG00000050997) #22 Lsmem1 (ENSRNOG00000039110) #23 Scin (ENSRNOG00000004498) #24 Arl4a (ENSRNOG00000069300) #25 LOC120093247 (ENSRNOG00000029594) RGD1560073 (ENSRNOG00000068503) Etv1 (ENSRNOG00000006867) #26 ENSRNOG00000066213 Dgkb (ENSRNOG00000030771) #27 Agmo (ENSRNOG00000023116) Meox2 (ENSRNOG00000006588) #28 Crppa (ENSRNOG00000006199) #29 ENSRNOG00000064210 Sostdc1 (ENSRNOG00000005770) #31 RGD1559808 (ENSRNOG00000051710) Lrrc72 (ENSRNOG00000025049) #32 Upper Galilee mountains blind mole rat MODERN SPECIES 677 ENSNGAG00000022971 ENSNGAG00000001634 ENSNGAG00000004370 Dock4 (ENSNGAG00000023174) #20 ENSNGAG00000023537 #21 Ifrd1 (ENSNGAG00000012469) #22 Lsmem1 (ENSNGAG00000022229) #23 Lesser Egyptian jerboa MODERN SPECIES 49 Cog5 (ENSJJAG00000016749) Dus4l (ENSJJAG00000013626) Bcap29 (ENSJJAG00000005153) #7 Slc26a4 (ENSJJAG00000022250) #8 ENSJJAG00000021241 #9 Slc26a3 (ENSJJAG00000023459) #10 Dld (ENSJJAG00000017085) #11 Lamb1 (ENSJJAG00000010107) #12 ENSJJAG00000019287 #13 ENSJJAG00000023546 #13 Pnpla8 (ENSJJAG00000003475) #14 Dnajb9 (ENSJJAG00000009877) #17 Lrrn3 (ENSJJAG00000008302) #18 Dock4 (ENSJJAG00000009482) #20 Zfp277 (ENSJJAG00000022259) #21 Ifrd1 (ENSJJAG00000000988) #22 Scin (ENSJJAG00000002358) #24 Arl4a (ENSJJAG00000011436) #25 Etv1 (ENSJJAG00000018471) #26 ENSJJAG00000020784 #27 Agmo (ENSJJAG00000023951) Meox2 (ENSJJAG00000008601) #28 ENSJJAG00000016648 Crppa (ENSJJAG00000012526) #29 Sostdc1 (ENSJJAG00000010091) #31 ENSJJAG00000023577 #32 Ankmy2 (ENSJJAG00000021161) #33 Bzw2 (ENSJJAG00000016668) #34 Tspan13 (ENSJJAG00000009446) #35 Agr2 (ENSJJAG00000008799) #36 Agr3 (ENSJJAG00000017440) ##36 Kangaroo rat MODERN SPECIES 391 ENSDORG00000029432 #13 ENSDORG00000001576 #13 ENSDORG00000029218 Pnpla8 (ENSDORG00000009929) #14 Dnajb9 (ENSDORG00000026902) #17 Lrrn3 (ENSDORG00000003984) #18 ENSDORG00000029747 ENSDORG00000026936 ENSDORG00000028272 Dock4 (ENSDORG00000007320) #20 Zfp277 (ENSDORG00000012687) #21 Ifrd1 (ENSDORG00000027806) #22 Lsmem1 (ENSDORG00000014428) #23 Scin (ENSDORG00000009917) #24 Arl4a (ENSDORG00000028437) #25 ENSDORG00000024765 Etv1 (ENSDORG00000001897) #26 Dgkb (ENSDORG00000002719) #27 Agmo (ENSDORG00000004862) Meox2 (ENSDORG00000004864) #28 Crppa (ENSDORG00000015225) #29 Sostdc1 (ENSDORG00000027355) #31 ENSDORG00000010873 #32 Ankmy2 (ENSDORG00000010876) #33 Bzw2 (ENSDORG00000010878) #34 Tspan13 (ENSDORG00000030021) #35 Agr2 (ENSDORG00000007734) #36 Lagomorpha ANCESTRAL SPECIES 24 ENSGT00550000074907 ENSGT00390000011863.d #7 ENSGT01070000253775.a.d.a.a.a.a #8 ENSGT00510000047522 #9 ENSGT01070000253775.a.d.a.a.a.b #10 ENSGT00550000074844 #11 ENSGT00940000156003 #12 ENSGT00940000155419 #13 ENSGT00940000154738.a #14 ENSGT00940000162392 #16 ENSGT00940000156246 #17 ENSGT00940000164174 ENSGT00940000160513 #18 ENSGT00940000155659 #20 ENSGT00390000010852 #21 ENSGT00390000013347.a #22 ENSGT00390000010292 #23 ENSGT00390000005941 ENSGT00390000010382 ENSGT00890000139436.B ENSGT00400000023684 ENSGT00940000157682.B ENSGT00940000155480 ENSGT00940000158685 ENSGT00940000159404 ENSGT00940000155993 ENSGT00950000183006.A.b ENSGT00950000183006.B.f.b.a ENSGT00940000158022 ENSGT00950000183119.a.e.b ENSGT00390000000873.a.b Rabbit MODERN SPECIES 18 ENSOCUG00000032229 ENSOCUG00000023945 ENSOCUG00000039542 ENSOCUG00000034101 ENSOCUG00000033116 ENSOCUG00000034217 ENSOCUG00000032928 ENSOCUG00000030032 LRRN3 (ENSOCUG00000013571) #18 ENSOCUG00000021967 ENSOCUG00000034628 DOCK4 (ENSOCUG00000010337) #20 ZNF277 (ENSOCUG00000007998) #21 ENSOCUG00000036357 ENSOCUG00000039157 IFRD1 (ENSOCUG00000015263) #22 ENSOCUG00000000894 #23 ENSOCUG00000036348 ENSOCUG00000029902 ENSOCUG00000032721 ENSOCUG00000035491 CNTNAP5 (ENSOCUG00000016546) ENSOCUG00000039391 ENSOCUG00000032100 ENSOCUG00000022291 ENSOCUG00000029450 ENSOCUG00000025227 BIN1 (ENSOCUG00000014862) CYP27C1 (ENSOCUG00000009153) ERCC3 (ENSOCUG00000002248) MAP3K2 (ENSOCUG00000002258) Pika MODERN SPECIES 2893 ZNF277 (ENSOPRG00000008888) #21 IFRD1 (ENSOPRG00000008908) #22 LSMEM1 (ENSOPRG00000008931) #23 TMEM168 (ENSOPRG00000008945) Tree shrew MODERN SPECIES 8886 IFRD1 (ENSTBEG00000016190) #22 LSMEM1 (ENSTBEG00000016286) #23