Murinae	ANCESTRAL SPECIES	8	ENSGT00940000159386	ENSGT00550000074845	ENSGT00950000182865.b.a.a	ENSGT00950000183024.a.b.a	ENSGT00940000160678.a #7	ENSGT00940000155573 #10	ENSGT00940000156499 #11	ENSGT00940000155419 #12	ENSGT00940000154738.a #13	ENSGT00940000156246 #15	ENSGT00940000160513 #17	ENSGT00550000075044 #18	ENSGT00940000155659 #19	ENSGT00390000010852 #20	ENSGT00900000143184 #21	ENSGT00390000013347.a #22	ENSGT00390000010292 #23	ENSGT00940000159083 #24	ENSGT00940000154546 #25	ENSGT00940000157123 #28	ENSGT00940000159770 #30	ENSGT00440000033807 #31	ENSGT00940000154018.b #32	ENSGT00390000006412 #33	ENSGT00860000136114 #34	ENSGT00390000014900.b.b.a #35	ENSGT00940000164009 #37	ENSGT00390000016820	ENSGT00390000012561.a	ENSGT00940000157010	ENSGT00530000063273.b.a.b.a.b
Rat	MODERN SPECIES	16	Foxg1 (ENSRNOG00000047891) #7	RGD1559629 (ENSRNOG00000031317) #8	ENSRNOG00000068318 #9	Nova1 (ENSRNOG00000031440) #10	Stxbp6 (ENSRNOG00000004198) #11	Nrcam (ENSRNOG00000004067) #12	Pnpla8 (ENSRNOG00000039091) #13	ENSRNOG00000064508 #14	Dnajb9 (ENSRNOG00000004006) #15	Ndufa10l1 (ENSRNOG00000062245) #16	Lrrn3 (ENSRNOG00000006368) #17	Immp2l (ENSRNOG00000067070) #18	Dock4 (ENSRNOG00000004823) #19	Zfp277 (ENSRNOG00000045854) #20	ENSRNOG00000069784 #21	Ifrd1 (ENSRNOG00000050997) #22	Lsmem1 (ENSRNOG00000039110) #23	Scin (ENSRNOG00000004498) #24	Arl4a (ENSRNOG00000069300) #25	LOC120093247 (ENSRNOG00000029594) #26	RGD1560073 (ENSRNOG00000068503) #27	Etv1 (ENSRNOG00000006867) #28	ENSRNOG00000066213 #29	Dgkb (ENSRNOG00000030771) #30	Agmo (ENSRNOG00000023116) #31	Meox2 (ENSRNOG00000006588) #32	Crppa (ENSRNOG00000006199) #33	ENSRNOG00000064210 #34	Sostdc1 (ENSRNOG00000005770) #35	RGD1559808 (ENSRNOG00000051710) #36	Lrrc72 (ENSRNOG00000025049) #37
Mus	ANCESTRAL SPECIES	10	ENSGT00940000159386	ENSGT00550000074845	ENSGT00950000182865.b.a.a	ENSGT00950000183024.a.b.a	ENSGT00940000160678.a #7	ENSGT00940000155573 #10	ENSGT00940000156499 #11	ENSGT00940000155419 #12	ENSGT00940000154738.a #13	ENSGT00940000156246 #15	ENSGT00940000160513 #17	ENSGT00550000075044 #18	ENSGT00940000155659 #19	ENSGT00390000010852 #20	ENSGT00900000143184 #21	ENSGT00390000013347.a #22	ENSGT00390000010292 #23	ENSGT00940000159083 #24	ENSGT00940000154546 #25	ENSGT00940000157123 #28	ENSGT00940000159770 #30	ENSGT00440000033807 #31	ENSGT00940000154018.b #32	ENSGT00390000006412 #33	ENSGT00860000136114 #34	ENSGT00390000014900.b.b.a #35	ENSGT00940000164009 #37	ENSGT00390000016820	ENSGT00390000012561.a	ENSGT00940000157010	ENSGT00530000063273.b.a.b.a.b
Mus_A	ANCESTRAL SPECIES	17	ENSGT00550000074845	ENSGT00950000182865.b.a.a	ENSGT00950000183024.a.b.a	ENSGT01100000267143	ENSGT00940000160678.a #7	ENSGT00940000155573 #10	ENSGT00940000156499 #11	ENSGT00940000155419 #12	ENSGT00940000154738.a #13	ENSGT00940000156246 #15	ENSGT00940000160513 #17	ENSGT00550000075044 #18	ENSGT00940000155659 #19	ENSGT00390000010852 #20	ENSGT00900000143184 #21	ENSGT00390000013347.a #22	ENSGT00390000010292 #23	ENSGT00940000159083 #24	ENSGT00940000154546 #25	ENSGT00940000157123 #28	ENSGT00940000159770 #30	ENSGT00440000033807 #31	ENSGT00940000154018.b #32	ENSGT00390000006412 #33	ENSGT00860000136114 #34	ENSGT00390000014900.b.b.a #35	ENSGT00940000164009 #37	ENSGT00390000016820	ENSGT00390000012561.a	ENSGT00940000157010	ENSGT00530000063273.b.a.b.a.b
Mus_B	ANCESTRAL SPECIES	17	ENSGT00550000074845	ENSGT00950000182865.b.a.a	ENSGT00950000183024.a.b.a	ENSGT01100000267143	ENSGT00940000160678.a #7	ENSGT00940000155573 #10	ENSGT00940000156499 #11	ENSGT00940000155419 #12	ENSGT00940000154738.a #13	ENSGT00940000156246 #15	ENSGT00940000160513 #17	ENSGT00550000075044 #18	ENSGT00940000155659 #19	ENSGT00390000010852 #20	ENSGT00900000143184 #21	ENSGT00390000013347.a #22	ENSGT00390000010292 #23	ENSGT00940000159083 #24	ENSGT00940000154546 #25	ENSGT00940000157123 #28	ENSGT00940000159770 #30	ENSGT00440000033807 #31	ENSGT00940000154018.b #32	ENSGT00390000006412 #33	ENSGT00860000136114 #34	ENSGT00390000014900.b.b.a #35	ENSGT00940000164009 #37	ENSGT00390000016820	ENSGT00390000012561.a	ENSGT00940000157010	ENSGT00530000063273.b.a.b.a.b
Mus_C	ANCESTRAL SPECIES	11	ENSGT00550000074845	ENSGT00950000182865.b.a.a	ENSGT00950000183024.a.b.a	ENSGT01100000267143	ENSGT00940000160678.a #7	ENSGT00940000155573 #10	ENSGT00940000156499 #11	ENSGT00940000155419 #12	ENSGT00940000154738.a #13	ENSGT00940000156246 #15	ENSGT00940000160513 #17	ENSGT00550000075044 #18	ENSGT00940000155659 #19	ENSGT00390000010852 #20	ENSGT00900000143184 #21	ENSGT00390000013347.a #22	ENSGT00390000010292 #23	ENSGT00940000159083 #24	ENSGT00940000154546 #25	ENSGT00940000157123 #28	ENSGT00940000159770 #30	ENSGT00440000033807 #31	ENSGT00940000154018.b #32	ENSGT00390000006412 #33	ENSGT00860000136114 #34	ENSGT00390000014900.b.b.a #35	ENSGT00940000164009 #37	ENSGT00390000016820	ENSGT00390000012561.a	ENSGT00940000157010	ENSGT00530000063273.b.a.b.a.b
spretus	MODERN SPECIES	3	MGP_SPRETEiJ_G0018575	MGP_SPRETEiJ_G0018574 #7	Foxg1 (MGP_SPRETEiJ_G0018573) #7	MGP_SPRETEiJ_G0018572	MGP_SPRETEiJ_G0018571	Nova1 (MGP_SPRETEiJ_G0018570) #10	Stxbp6 (MGP_SPRETEiJ_G0018569) #11	Nrcam (MGP_SPRETEiJ_G0018568) #12	Pnpla8 (MGP_SPRETEiJ_G0018567) #13	Dnajb9 (MGP_SPRETEiJ_G0018566) #15	Lrrn3 (MGP_SPRETEiJ_G0018565) #17	Immp2l (MGP_SPRETEiJ_G0018564) #18	Dock4 (MGP_SPRETEiJ_G0018563) #19	MGP_SPRETEiJ_G0018562 #20	MGP_SPRETEiJ_G0018561 #21	Ifrd1 (MGP_SPRETEiJ_G0018560) #22	Lsmem1 (MGP_SPRETEiJ_G0018559) #23	Scin (MGP_SPRETEiJ_G0018558) #24	Arl4a (MGP_SPRETEiJ_G0018557) #25	Etv1 (MGP_SPRETEiJ_G0018556) #28	Dgkb (MGP_SPRETEiJ_G0018555) #30	Agmo (MGP_SPRETEiJ_G0018554) #31	Meox2 (MGP_SPRETEiJ_G0018553) #32	Crppa (MGP_SPRETEiJ_G0018552) #33	MGP_SPRETEiJ_G0018551 #34	Sostdc1 (MGP_SPRETEiJ_G0018550) #35	MGP_SPRETEiJ_G0018549 #37	Ankmy2 (MGP_SPRETEiJ_G0018548)	Bzw2 (MGP_SPRETEiJ_G0018547)	MGP_SPRETEiJ_G0018546	Tspan13 (MGP_SPRETEiJ_G0018545)
Steppe mouse	MODERN SPECIES	126															ENSMSIG00000001477 #21	Ifrd1 (ENSMSIG00000001485) #22	Lsmem1 (ENSMSIG00000001554) #23	Scin (ENSMSIG00000001583) #24	ENSMSIG00000001716 #25
Mouse	MODERN SPECIES	3	Coch (ENSMUSG00000020953)	Scfd1 (ENSMUSG00000020952)	G2e3 (ENSMUSG00000035293)	Prkd1 (ENSMUSG00000002688)	Gm43517 (ENSMUSG00000089922)	Foxg1 (ENSMUSG00000020950) #7	Nova1 (ENSMUSG00000021047) #10	Stxbp6 (ENSMUSG00000046314) #11	Nrcam (ENSMUSG00000020598) #12	Pnpla8 (ENSMUSG00000036257) #13	Dnajb9 (ENSMUSG00000014905) #15	Lrrn3 (ENSMUSG00000036295) #17	Immp2l (ENSMUSG00000056899) #18	Dock4 (ENSMUSG00000035954) #19	Zfp277 (ENSMUSG00000055917) #20	Ifrd1 (ENSMUSG00000001627) #22	Lsmem1 (ENSMUSG00000071342) #23	Scin (ENSMUSG00000002565) #24	Arl4a (ENSMUSG00000047446) #25	Etv1 (ENSMUSG00000004151) #28	Dgkb (ENSMUSG00000036095) #30	Agmo (ENSMUSG00000050103) #31	Meox2 (ENSMUSG00000036144) #32	Crppa (ENSMUSG00000043153) #33	Sostdc1 (ENSMUSG00000036169) #35	Lrrc72 (ENSMUSG00000020545) #37	Ankmy2 (ENSMUSG00000036188)	Bzw2 (ENSMUSG00000020547)	Tspan13 (ENSMUSG00000020577)	Agr2 (ENSMUSG00000020581)	Agr3 (ENSMUSG00000036231)
Ryukyu mouse	MODERN SPECIES	3	G2e3 (MGP_CAROLIEiJ_G0017733)	Prkd1 (MGP_CAROLIEiJ_G0017732)	MGP_CAROLIEiJ_G0017731	MGP_CAROLIEiJ_G0017730 #7	Foxg1 (MGP_CAROLIEiJ_G0017729) #7	Nova1 (MGP_CAROLIEiJ_G0017728) #10	Stxbp6 (MGP_CAROLIEiJ_G0017727) #11	Nrcam (MGP_CAROLIEiJ_G0017726) #12	Pnpla8 (MGP_CAROLIEiJ_G0017725) #13	Dnajb9 (MGP_CAROLIEiJ_G0017724) #15	Lrrn3 (MGP_CAROLIEiJ_G0017723) #17	Immp2l (MGP_CAROLIEiJ_G0017722) #18	Dock4 (MGP_CAROLIEiJ_G0017721) #19	MGP_CAROLIEiJ_G0017720 #20	MGP_CAROLIEiJ_G0017719 #21	Ifrd1 (MGP_CAROLIEiJ_G0017718) #22	Lsmem1 (MGP_CAROLIEiJ_G0017717) #23	Scin (MGP_CAROLIEiJ_G0017716) #24	Arl4a (MGP_CAROLIEiJ_G0017715) #25	Etv1 (MGP_CAROLIEiJ_G0017714) #28	Dgkb (MGP_CAROLIEiJ_G0017713) #30	MGP_CAROLIEiJ_G0017712	Agmo (MGP_CAROLIEiJ_G0017711) #31	Meox2 (MGP_CAROLIEiJ_G0017710) #32	Crppa (MGP_CAROLIEiJ_G0017709) #33	MGP_CAROLIEiJ_G0017708 #34	Sostdc1 (MGP_CAROLIEiJ_G0017707) #35	MGP_CAROLIEiJ_G0017706 #37	Ankmy2 (MGP_CAROLIEiJ_G0017705)	Bzw2 (MGP_CAROLIEiJ_G0017704)	Tspan13 (MGP_CAROLIEiJ_G0017703)
Shrew mouse	MODERN SPECIES	20	Scfd1 (MGP_PahariEiJ_G0029490)	G2e3 (MGP_PahariEiJ_G0029489)	Prkd1 (MGP_PahariEiJ_G0029488)	MGP_PahariEiJ_G0029487 #7	Foxg1 (MGP_PahariEiJ_G0029486) #7	Nova1 (MGP_PahariEiJ_G0029485) #10	Stxbp6 (MGP_PahariEiJ_G0029484) #11	Nrcam (MGP_PahariEiJ_G0029483) #12	Pnpla8 (MGP_PahariEiJ_G0029482) #13	Dnajb9 (MGP_PahariEiJ_G0029481) #15	Lrrn3 (MGP_PahariEiJ_G0029480) #17	Immp2l (MGP_PahariEiJ_G0029479) #18	Dock4 (MGP_PahariEiJ_G0029478) #19	MGP_PahariEiJ_G0029477 #20	MGP_PahariEiJ_G0029476 #21	Ifrd1 (MGP_PahariEiJ_G0029475) #22	Lsmem1 (MGP_PahariEiJ_G0029474) #23	Scin (MGP_PahariEiJ_G0029473) #24	Arl4a (MGP_PahariEiJ_G0029472) #25	Etv1 (MGP_PahariEiJ_G0029471) #28	Dgkb (MGP_PahariEiJ_G0029470) #30	Agmo (MGP_PahariEiJ_G0029469) #31	Meox2 (MGP_PahariEiJ_G0029468) #32	Crppa (MGP_PahariEiJ_G0029467) #33	MGP_PahariEiJ_G0029466 #34	Sostdc1 (MGP_PahariEiJ_G0029465) #35	MGP_PahariEiJ_G0029464 #37	Ankmy2 (MGP_PahariEiJ_G0029463)	Bzw2 (MGP_PahariEiJ_G0029462)	Tspan13 (MGP_PahariEiJ_G0029461)	Agr2 (MGP_PahariEiJ_G0029460)