Rodentia	ANCESTRAL SPECIES	12	ENSGT01070000253775.a.d.a.a.a.a	ENSGT00950000186265	ENSGT00510000047522	ENSGT01070000253775.a.d.a.a.a.b	ENSGT00550000074844	ENSGT00940000156003	ENSGT00940000162514	ENSGT00940000155419 #14	ENSGT00940000154738.a #15	ENSGT00940000162392	ENSGT00940000156246 #16	ENSGT00550000075044 #18	ENSGT00940000160513 #19	ENSGT00940000155659 #20	ENSGT00390000010852 #21	ENSGT00390000013347.a #22	ENSGT00390000010292 #24	ENSGT00940000159083 #25	ENSGT00940000154546 #26	ENSGT00940000157123 #28	ENSGT00940000159770 #29	ENSGT00440000033807 #30	ENSGT00940000154018.b #31	ENSGT00390000006412 #32	ENSGT00910000147441	ENSGT00390000014900.b.b.a #33	ENSGT00940000164009 #34	ENSGT00940000153289.a.b	ENSGT00390000016820 #35	ENSGT00390000012561.a #36	ENSGT00940000157010 #37
Rodentia_B	ANCESTRAL SPECIES	9	ENSGT00550000074907	ENSGT00390000011863.d	ENSGT01070000253775.a.d.a.a.a.a	ENSGT00950000186265	ENSGT00510000047522	ENSGT01070000253775.a.d.a.a.a.b	ENSGT00550000074844	ENSGT00940000156003	ENSGT00940000155419 #14	ENSGT00940000154738.a #15	ENSGT00940000156246 #16	ENSGT00940000160513 #19	ENSGT00550000075044 #18	ENSGT00940000155659 #20	ENSGT00390000010852 #21	ENSGT00390000013347.a #22	ENSGT00390000010292 #24	ENSGT00940000159083 #25	ENSGT00940000154546 #26	ENSGT00940000157123 #28	ENSGT00940000159770 #29	ENSGT00440000033807 #30	ENSGT00940000154018.b #31	ENSGT00390000006412 #32	ENSGT00390000014900.b.b.a #33	ENSGT00940000164009 #34	ENSGT00390000016820 #35	ENSGT00390000012561.a #36	ENSGT00940000157010 #37	ENSGT00530000063273.b.a.b.a.b	ENSGT00530000063273.b.a.b.a.a
Myomorpha	ANCESTRAL SPECIES	8	ENSGT00550000074907	ENSGT00390000011863.d	ENSGT01070000253775.a.d.a.a.a.a	ENSGT00950000186265	ENSGT00510000047522	ENSGT01070000253775.a.d.a.a.a.b	ENSGT00550000074844	ENSGT00940000156003	ENSGT00940000155419 #14	ENSGT00940000154738.a #15	ENSGT00940000156246 #16	ENSGT00940000160513 #19	ENSGT00550000075044 #18	ENSGT00940000155659 #20	ENSGT00390000010852 #21	ENSGT00390000013347.a #22	ENSGT00390000010292 #24	ENSGT00940000159083 #25	ENSGT00940000154546 #26	ENSGT00940000157123 #28	ENSGT00940000159770 #29	ENSGT00440000033807 #30	ENSGT00940000154018.b #31	ENSGT00390000006412 #32	ENSGT00390000014900.b.b.a #33	ENSGT00940000164009 #34	ENSGT00390000016820 #35	ENSGT00390000012561.a #36	ENSGT00940000157010 #37	ENSGT00530000063273.b.a.b.a.b	ENSGT00530000063273.b.a.b.a.a
Muroidea	ANCESTRAL SPECIES	8	ENSGT00550000074907	ENSGT00390000011863.d	ENSGT01070000253775.a.d.a.a.a.a	ENSGT00950000186265	ENSGT00510000047522	ENSGT01070000253775.a.d.a.a.a.b	ENSGT00550000074844	ENSGT00940000156003	ENSGT00940000155419 #14	ENSGT00940000154738.a #15	ENSGT00940000156246 #16	ENSGT00940000160513 #19	ENSGT00550000075044 #18	ENSGT00940000155659 #20	ENSGT00390000010852 #21	ENSGT00390000013347.a #22	ENSGT00390000010292 #24	ENSGT00940000159083 #25	ENSGT00940000154546 #26	ENSGT00940000157123 #28	ENSGT00940000159770 #29	ENSGT00440000033807 #30	ENSGT00940000154018.b #31	ENSGT00390000006412 #32	ENSGT00390000014900.b.b.a #33	ENSGT00940000164009 #34	ENSGT00390000016820 #35	ENSGT00390000012561.a #36	ENSGT00940000157010 #37	ENSGT00530000063273.b.a.b.a.b	ENSGT00530000063273.b.a.b.a.a
Muroidea_A	ANCESTRAL SPECIES	15	ENSGT00940000159386	ENSGT00550000074845	ENSGT00950000182865.b.a.a	ENSGT00950000183024.a.b.a #7	ENSGT00940000160678.a #8	ENSGT00940000155573 #10	ENSGT00940000156499 #12	ENSGT00940000155419 #14	ENSGT00940000154738.a #15	ENSGT00940000156246 #16	ENSGT00940000160513 #19	ENSGT00550000075044 #18	ENSGT00940000155659 #20	ENSGT00390000010852 #21	ENSGT00900000143184 #23	ENSGT00390000013347.a #22	ENSGT00390000010292 #24	ENSGT00940000159083 #25	ENSGT00940000154546 #26	ENSGT00940000157123 #28	ENSGT00940000159770 #29	ENSGT00440000033807 #30	ENSGT00940000154018.b #31	ENSGT00390000006412 #32	ENSGT00390000014900.b.b.a #33	ENSGT00940000164009 #34	ENSGT00390000016820 #35	ENSGT00390000012561.a #36	ENSGT00940000157010 #37	ENSGT00530000063273.b.a.b.a.b	ENSGT00530000063273.b.a.b.a.a
Cricetidae	ANCESTRAL SPECIES	17	ENSGT00940000159386	ENSGT00550000074845	ENSGT00950000182865.b.a.a	ENSGT00950000183024.a.b.a #7	ENSGT00940000160678.a #8	ENSGT00940000155573 #10	ENSGT00940000156499 #12	ENSGT00940000155419 #14	ENSGT00940000154738.a #15	ENSGT00940000156246 #16	ENSGT00940000164174	ENSGT00940000160513 #19	ENSGT00940000155659 #20	ENSGT00390000010852 #21	ENSGT00900000143184 #23	ENSGT00390000013347.a #22	ENSGT00390000010292 #24	ENSGT00940000159083 #25	ENSGT00940000154546 #26	ENSGT00940000157123 #28	ENSGT00940000159770 #29	ENSGT00440000033807 #30	ENSGT00940000154018.b #31	ENSGT00390000006412 #32	ENSGT00390000014900.b.b.a #33	ENSGT00940000164009 #34	ENSGT00390000016820 #35	ENSGT00390000012561.a #36	ENSGT00940000157010 #37	ENSGT00530000063273.b.a.b.a.b	ENSGT00530000063273.b.a.b.a.a
Cricetinae	ANCESTRAL SPECIES	11	ENSGT00940000159386	ENSGT00550000074845	ENSGT00950000182865.b.a.a	ENSGT00950000183024.a.b.a #7	ENSGT00940000160678.a #8	ENSGT00940000155573 #10	ENSGT00940000156499 #12	ENSGT00940000155419 #14	ENSGT00940000154738.a #15	ENSGT00940000156246 #16	ENSGT00550000075044 #18	ENSGT00940000160513 #19	ENSGT00940000155659 #20	ENSGT00390000010852 #21	ENSGT00900000143184 #23	ENSGT00390000013347.a #22	ENSGT00390000010292 #24	ENSGT00940000159083 #25	ENSGT00940000154546 #26	ENSGT00940000157123 #28	ENSGT00940000159770 #29	ENSGT00440000033807 #30	ENSGT00940000154018.b #31	ENSGT00390000006412 #32	ENSGT00390000014900.b.b.a #33	ENSGT00940000164009 #34	ENSGT00390000016820 #35	ENSGT00390000012561.a #36	ENSGT00940000157010 #37	ENSGT00530000063273.b.a.b.a.b	ENSGT00530000063273.b.a.b.a.a
Chinese hamster chok1gshd	MODERN SPECIES	2	Prkd1 (ENSCGRG00001019739) #7	Foxg1 (ENSCGRG00001009864) #8	ENSCGRG00001023108 #9	Nova1 (ENSCGRG00001024030) #10	ENSCGRG00001015898 #11	Stxbp6 (ENSCGRG00001016560) #12	ENSCGRG00001015987 #13	Nrcam (ENSCGRG00001023691) #14	Pnpla8 (ENSCGRG00001002943) #15	DNAJB9 (ENSCGRG00001006614) #16	ENSCGRG00001009365 #17	Immp2l (ENSCGRG00001013717) #18	Lrrn3 (ENSCGRG00001010451) #19	Dock4 (ENSCGRG00001024824) #20	Zfp277 (ENSCGRG00001022696) #21	Ifrd1 (ENSCGRG00001023172) #22	ENSCGRG00001023478 #23	Lsmem1 (ENSCGRG00001024872) #24	Scin (ENSCGRG00001000973) #25	Arl4a (ENSCGRG00001004637) #26	ENSCGRG00001006054 #27	Etv1 (ENSCGRG00001002069) #28	Dgkb (ENSCGRG00001011791) #29	Agmo (ENSCGRG00001017658) #30	Meox2 (ENSCGRG00001005953) #31	Crppa (ENSCGRG00001009392) #32	Sostdc1 (ENSCGRG00001011682) #33	ENSCGRG00001020084 #34	Ankmy2 (ENSCGRG00001009172) #35	ENSCGRG00001013113 #36	Tspan13 (ENSCGRG00001023940) #37
Golden Hamster	MODERN SPECIES	677	Cbfb (ENSMAUG00000017365)	Phaf1 (ENSMAUG00000000635)	B3gnt9 (ENSMAUG00000000090)	Tradd (ENSMAUG00000000327)	Fbxl8 (ENSMAUG00000018497)	Hsf4 (ENSMAUG00000000872)	Nol3 (ENSMAUG00000001852)	Matcap1 (ENSMAUG00000002709)	Exoc3l (ENSMAUG00000000438)	ENSMAUG00000001090	ENSMAUG00000003972	Lrrn3 (ENSMAUG00000006396) #19	Dock4 (ENSMAUG00000004565) #20	Zfp277 (ENSMAUG00000009201) #21	ENSMAUG00000012490 #23	Ifrd1 (ENSMAUG00000013118) #22	Lsmem1 (ENSMAUG00000013434) #24	Scin (ENSMAUG00000010111) #25	Arl4a (ENSMAUG00000013648) #26	Etv1 (ENSMAUG00000015439) #28	ENSMAUG00000017823	Dgkb (ENSMAUG00000014209) #29	Agmo (ENSMAUG00000000152) #30	Meox2 (ENSMAUG00000015354) #31	Crppa (ENSMAUG00000014377) #32	Sostdc1 (ENSMAUG00000015477) #33	Lrrc72 (ENSMAUG00000017684) #34	Ankmy2 (ENSMAUG00000019069) #35	Bzw2 (ENSMAUG00000000123) #36	Tspan13 (ENSMAUG00000017648) #37	Agr2 (ENSMAUG00000017131)
Cricetidae_B	ANCESTRAL SPECIES	44	ENSGT00950000183095.a.a	ENSGT00940000159386	ENSGT00550000074845	ENSGT00950000182865.b.a.a	ENSGT00950000183024.a.b.a #7	ENSGT00940000160678.a #8	ENSGT00940000155573 #10	ENSGT00940000156499 #12	ENSGT00940000155419 #14	ENSGT00940000154738.a #15	ENSGT00940000156246 #16	ENSGT00550000075044 #18	ENSGT00940000160513 #19	ENSGT00940000155659 #20	ENSGT00390000010852 #21	ENSGT00390000013347.a #22	ENSGT00390000010292 #24	ENSGT00940000159083 #25	ENSGT00940000154546 #26	ENSGT00940000157123 #28	ENSGT00940000159770 #29	ENSGT00440000033807 #30	ENSGT00940000154018.b #31	ENSGT00390000006412 #32	ENSGT00390000014900.b.b.a #33	ENSGT00940000164009 #34	ENSGT00390000016820 #35	ENSGT00390000012561.a #36	ENSGT00940000157010 #37	ENSGT00530000063273.b.a.b.a.b	ENSGT00530000063273.b.a.b.a.a
Northern American deer mouse	MODERN SPECIES	5	ENSPEMG00000011512	Foxg1 (ENSPEMG00000014163) #8	Nova1 (ENSPEMG00000006503) #10	Stxbp6 (ENSPEMG00000006826) #12	ENSPEMG00000008750	Nrcam (ENSPEMG00000000666) #14	Pnpla8 (ENSPEMG00000013308) #15	Dnajb9 (ENSPEMG00000025224) #16	ENSPEMG00000030494	ENSPEMG00000000820	Immp2l (ENSPEMG00000017740) #18	Lrrn3 (ENSPEMG00000013198) #19	Dock4 (ENSPEMG00000011461) #20	Zfp277 (ENSPEMG00000016665) #21	ENSPEMG00000025333	Ifrd1 (ENSPEMG00000000131) #22	Lsmem1 (ENSPEMG00000026633) #24	Scin (ENSPEMG00000000931) #25	Arl4a (ENSPEMG00000029611) #26	ENSPEMG00000022349	Etv1 (ENSPEMG00000019917) #28	Dgkb (ENSPEMG00000014272) #29	Agmo (ENSPEMG00000000373) #30	Meox2 (ENSPEMG00000016173) #31	ENSPEMG00000028429	ENSPEMG00000029044	Crppa (ENSPEMG00000019928) #32	Sostdc1 (ENSPEMG00000024450) #33	Lrrc72 (ENSPEMG00000019796) #34	Ankmy2 (ENSPEMG00000019745) #35	ENSPEMG00000028328
Prairie vole	MODERN SPECIES		Scfd1 (ENSMOCG00000017239)	G2e3 (ENSMOCG00000012420)	Prkd1 (ENSMOCG00000021339) #7	Foxg1 (ENSMOCG00000008016) #8	ENSMOCG00000007728	Nova1 (ENSMOCG00000006277) #10	Stxbp6 (ENSMOCG00000008146) #12	Nrcam (ENSMOCG00000016008) #14	Pnpla8 (ENSMOCG00000017091) #15	Dnajb9 (ENSMOCG00000005620) #16	ENSMOCG00000013184	Immp2l (ENSMOCG00000018275) #18	Lrrn3 (ENSMOCG00000002674) #19	Dock4 (ENSMOCG00000001161) #20	Zfp277 (ENSMOCG00000017178) #21	Ifrd1 (ENSMOCG00000021204) #22	Lsmem1 (ENSMOCG00000003353) #24	Scin (ENSMOCG00000016209) #25	Arl4a (ENSMOCG00000019911) #26	Etv1 (ENSMOCG00000008553) #28	Dgkb (ENSMOCG00000005546) #29	ENSMOCG00000007404	Agmo (ENSMOCG00000011222) #30	Meox2 (ENSMOCG00000017187) #31	Crppa (ENSMOCG00000010683) #32	Sostdc1 (ENSMOCG00000003725) #33	ENSMOCG00000004617 #34	Ankmy2 (ENSMOCG00000015950) #35	Bzw2 (ENSMOCG00000020705) #36	Tspan13 (ENSMOCG00000010667) #37	Agr2 (ENSMOCG00000013251)
Murinae	ANCESTRAL SPECIES	8	ENSGT00940000159386	ENSGT00550000074845	ENSGT00950000182865.b.a.a	ENSGT00950000183024.a.b.a #7	ENSGT00940000160678.a #8	ENSGT00940000155573 #10	ENSGT00940000156499 #12	ENSGT00940000155419 #14	ENSGT00940000154738.a #15	ENSGT00940000156246 #16	ENSGT00940000160513 #19	ENSGT00550000075044 #18	ENSGT00940000155659 #20	ENSGT00390000010852 #21	ENSGT00900000143184 #23	ENSGT00390000013347.a #22	ENSGT00390000010292 #24	ENSGT00940000159083 #25	ENSGT00940000154546 #26	ENSGT00940000157123 #28	ENSGT00940000159770 #29	ENSGT00440000033807 #30	ENSGT00940000154018.b #31	ENSGT00390000006412 #32	ENSGT00860000136114	ENSGT00390000014900.b.b.a #33	ENSGT00940000164009 #34	ENSGT00390000016820 #35	ENSGT00390000012561.a #36	ENSGT00940000157010 #37	ENSGT00530000063273.b.a.b.a.b
Mus	ANCESTRAL SPECIES	10	ENSGT00940000159386	ENSGT00550000074845	ENSGT00950000182865.b.a.a	ENSGT00950000183024.a.b.a #7	ENSGT00940000160678.a #8	ENSGT00940000155573 #10	ENSGT00940000156499 #12	ENSGT00940000155419 #14	ENSGT00940000154738.a #15	ENSGT00940000156246 #16	ENSGT00940000160513 #19	ENSGT00550000075044 #18	ENSGT00940000155659 #20	ENSGT00390000010852 #21	ENSGT00900000143184 #23	ENSGT00390000013347.a #22	ENSGT00390000010292 #24	ENSGT00940000159083 #25	ENSGT00940000154546 #26	ENSGT00940000157123 #28	ENSGT00940000159770 #29	ENSGT00440000033807 #30	ENSGT00940000154018.b #31	ENSGT00390000006412 #32	ENSGT00860000136114	ENSGT00390000014900.b.b.a #33	ENSGT00940000164009 #34	ENSGT00390000016820 #35	ENSGT00390000012561.a #36	ENSGT00940000157010 #37	ENSGT00530000063273.b.a.b.a.b
Mus_A	ANCESTRAL SPECIES	17	ENSGT00550000074845	ENSGT00950000182865.b.a.a	ENSGT00950000183024.a.b.a #7	ENSGT01100000267143	ENSGT00940000160678.a #8	ENSGT00940000155573 #10	ENSGT00940000156499 #12	ENSGT00940000155419 #14	ENSGT00940000154738.a #15	ENSGT00940000156246 #16	ENSGT00940000160513 #19	ENSGT00550000075044 #18	ENSGT00940000155659 #20	ENSGT00390000010852 #21	ENSGT00900000143184 #23	ENSGT00390000013347.a #22	ENSGT00390000010292 #24	ENSGT00940000159083 #25	ENSGT00940000154546 #26	ENSGT00940000157123 #28	ENSGT00940000159770 #29	ENSGT00440000033807 #30	ENSGT00940000154018.b #31	ENSGT00390000006412 #32	ENSGT00860000136114	ENSGT00390000014900.b.b.a #33	ENSGT00940000164009 #34	ENSGT00390000016820 #35	ENSGT00390000012561.a #36	ENSGT00940000157010 #37	ENSGT00530000063273.b.a.b.a.b
Mus_B	ANCESTRAL SPECIES	17	ENSGT00550000074845	ENSGT00950000182865.b.a.a	ENSGT00950000183024.a.b.a #7	ENSGT01100000267143	ENSGT00940000160678.a #8	ENSGT00940000155573 #10	ENSGT00940000156499 #12	ENSGT00940000155419 #14	ENSGT00940000154738.a #15	ENSGT00940000156246 #16	ENSGT00940000160513 #19	ENSGT00550000075044 #18	ENSGT00940000155659 #20	ENSGT00390000010852 #21	ENSGT00900000143184 #23	ENSGT00390000013347.a #22	ENSGT00390000010292 #24	ENSGT00940000159083 #25	ENSGT00940000154546 #26	ENSGT00940000157123 #28	ENSGT00940000159770 #29	ENSGT00440000033807 #30	ENSGT00940000154018.b #31	ENSGT00390000006412 #32	ENSGT00860000136114	ENSGT00390000014900.b.b.a #33	ENSGT00940000164009 #34	ENSGT00390000016820 #35	ENSGT00390000012561.a #36	ENSGT00940000157010 #37	ENSGT00530000063273.b.a.b.a.b
Mus_C	ANCESTRAL SPECIES	11	ENSGT00550000074845	ENSGT00950000182865.b.a.a	ENSGT00950000183024.a.b.a #7	ENSGT01100000267143	ENSGT00940000160678.a #8	ENSGT00940000155573 #10	ENSGT00940000156499 #12	ENSGT00940000155419 #14	ENSGT00940000154738.a #15	ENSGT00940000156246 #16	ENSGT00940000160513 #19	ENSGT00550000075044 #18	ENSGT00940000155659 #20	ENSGT00390000010852 #21	ENSGT00900000143184 #23	ENSGT00390000013347.a #22	ENSGT00390000010292 #24	ENSGT00940000159083 #25	ENSGT00940000154546 #26	ENSGT00940000157123 #28	ENSGT00940000159770 #29	ENSGT00440000033807 #30	ENSGT00940000154018.b #31	ENSGT00390000006412 #32	ENSGT00860000136114	ENSGT00390000014900.b.b.a #33	ENSGT00940000164009 #34	ENSGT00390000016820 #35	ENSGT00390000012561.a #36	ENSGT00940000157010 #37	ENSGT00530000063273.b.a.b.a.b
spretus	MODERN SPECIES	3	MGP_SPRETEiJ_G0018575	MGP_SPRETEiJ_G0018574 #8	Foxg1 (MGP_SPRETEiJ_G0018573) #8	MGP_SPRETEiJ_G0018572	MGP_SPRETEiJ_G0018571	Nova1 (MGP_SPRETEiJ_G0018570) #10	Stxbp6 (MGP_SPRETEiJ_G0018569) #12	Nrcam (MGP_SPRETEiJ_G0018568) #14	Pnpla8 (MGP_SPRETEiJ_G0018567) #15	Dnajb9 (MGP_SPRETEiJ_G0018566) #16	Lrrn3 (MGP_SPRETEiJ_G0018565) #19	Immp2l (MGP_SPRETEiJ_G0018564) #18	Dock4 (MGP_SPRETEiJ_G0018563) #20	MGP_SPRETEiJ_G0018562 #21	MGP_SPRETEiJ_G0018561 #23	Ifrd1 (MGP_SPRETEiJ_G0018560) #22	Lsmem1 (MGP_SPRETEiJ_G0018559) #24	Scin (MGP_SPRETEiJ_G0018558) #25	Arl4a (MGP_SPRETEiJ_G0018557) #26	Etv1 (MGP_SPRETEiJ_G0018556) #28	Dgkb (MGP_SPRETEiJ_G0018555) #29	Agmo (MGP_SPRETEiJ_G0018554) #30	Meox2 (MGP_SPRETEiJ_G0018553) #31	Crppa (MGP_SPRETEiJ_G0018552) #32	MGP_SPRETEiJ_G0018551	Sostdc1 (MGP_SPRETEiJ_G0018550) #33	MGP_SPRETEiJ_G0018549 #34	Ankmy2 (MGP_SPRETEiJ_G0018548) #35	Bzw2 (MGP_SPRETEiJ_G0018547) #36	MGP_SPRETEiJ_G0018546	Tspan13 (MGP_SPRETEiJ_G0018545) #37
Steppe mouse	MODERN SPECIES	126															ENSMSIG00000001477 #23	Ifrd1 (ENSMSIG00000001485) #22	Lsmem1 (ENSMSIG00000001554) #24	Scin (ENSMSIG00000001583) #25	ENSMSIG00000001716 #26
Mouse	MODERN SPECIES	3	Coch (ENSMUSG00000020953)	Scfd1 (ENSMUSG00000020952)	G2e3 (ENSMUSG00000035293)	Prkd1 (ENSMUSG00000002688) #7	Gm43517 (ENSMUSG00000089922)	Foxg1 (ENSMUSG00000020950) #8	Nova1 (ENSMUSG00000021047) #10	Stxbp6 (ENSMUSG00000046314) #12	Nrcam (ENSMUSG00000020598) #14	Pnpla8 (ENSMUSG00000036257) #15	Dnajb9 (ENSMUSG00000014905) #16	Lrrn3 (ENSMUSG00000036295) #19	Immp2l (ENSMUSG00000056899) #18	Dock4 (ENSMUSG00000035954) #20	Zfp277 (ENSMUSG00000055917) #21	Ifrd1 (ENSMUSG00000001627) #22	Lsmem1 (ENSMUSG00000071342) #24	Scin (ENSMUSG00000002565) #25	Arl4a (ENSMUSG00000047446) #26	Etv1 (ENSMUSG00000004151) #28	Dgkb (ENSMUSG00000036095) #29	Agmo (ENSMUSG00000050103) #30	Meox2 (ENSMUSG00000036144) #31	Crppa (ENSMUSG00000043153) #32	Sostdc1 (ENSMUSG00000036169) #33	Lrrc72 (ENSMUSG00000020545) #34	Ankmy2 (ENSMUSG00000036188) #35	Bzw2 (ENSMUSG00000020547) #36	Tspan13 (ENSMUSG00000020577) #37	Agr2 (ENSMUSG00000020581)	Agr3 (ENSMUSG00000036231)
Ryukyu mouse	MODERN SPECIES	3	G2e3 (MGP_CAROLIEiJ_G0017733)	Prkd1 (MGP_CAROLIEiJ_G0017732) #7	MGP_CAROLIEiJ_G0017731	MGP_CAROLIEiJ_G0017730 #8	Foxg1 (MGP_CAROLIEiJ_G0017729) #8	Nova1 (MGP_CAROLIEiJ_G0017728) #10	Stxbp6 (MGP_CAROLIEiJ_G0017727) #12	Nrcam (MGP_CAROLIEiJ_G0017726) #14	Pnpla8 (MGP_CAROLIEiJ_G0017725) #15	Dnajb9 (MGP_CAROLIEiJ_G0017724) #16	Lrrn3 (MGP_CAROLIEiJ_G0017723) #19	Immp2l (MGP_CAROLIEiJ_G0017722) #18	Dock4 (MGP_CAROLIEiJ_G0017721) #20	MGP_CAROLIEiJ_G0017720 #21	MGP_CAROLIEiJ_G0017719 #23	Ifrd1 (MGP_CAROLIEiJ_G0017718) #22	Lsmem1 (MGP_CAROLIEiJ_G0017717) #24	Scin (MGP_CAROLIEiJ_G0017716) #25	Arl4a (MGP_CAROLIEiJ_G0017715) #26	Etv1 (MGP_CAROLIEiJ_G0017714) #28	Dgkb (MGP_CAROLIEiJ_G0017713) #29	MGP_CAROLIEiJ_G0017712	Agmo (MGP_CAROLIEiJ_G0017711) #30	Meox2 (MGP_CAROLIEiJ_G0017710) #31	Crppa (MGP_CAROLIEiJ_G0017709) #32	MGP_CAROLIEiJ_G0017708	Sostdc1 (MGP_CAROLIEiJ_G0017707) #33	MGP_CAROLIEiJ_G0017706 #34	Ankmy2 (MGP_CAROLIEiJ_G0017705) #35	Bzw2 (MGP_CAROLIEiJ_G0017704) #36	Tspan13 (MGP_CAROLIEiJ_G0017703) #37
Shrew mouse	MODERN SPECIES	20	Scfd1 (MGP_PahariEiJ_G0029490)	G2e3 (MGP_PahariEiJ_G0029489)	Prkd1 (MGP_PahariEiJ_G0029488) #7	MGP_PahariEiJ_G0029487 #8	Foxg1 (MGP_PahariEiJ_G0029486) #8	Nova1 (MGP_PahariEiJ_G0029485) #10	Stxbp6 (MGP_PahariEiJ_G0029484) #12	Nrcam (MGP_PahariEiJ_G0029483) #14	Pnpla8 (MGP_PahariEiJ_G0029482) #15	Dnajb9 (MGP_PahariEiJ_G0029481) #16	Lrrn3 (MGP_PahariEiJ_G0029480) #19	Immp2l (MGP_PahariEiJ_G0029479) #18	Dock4 (MGP_PahariEiJ_G0029478) #20	MGP_PahariEiJ_G0029477 #21	MGP_PahariEiJ_G0029476 #23	Ifrd1 (MGP_PahariEiJ_G0029475) #22	Lsmem1 (MGP_PahariEiJ_G0029474) #24	Scin (MGP_PahariEiJ_G0029473) #25	Arl4a (MGP_PahariEiJ_G0029472) #26	Etv1 (MGP_PahariEiJ_G0029471) #28	Dgkb (MGP_PahariEiJ_G0029470) #29	Agmo (MGP_PahariEiJ_G0029469) #30	Meox2 (MGP_PahariEiJ_G0029468) #31	Crppa (MGP_PahariEiJ_G0029467) #32	MGP_PahariEiJ_G0029466	Sostdc1 (MGP_PahariEiJ_G0029465) #33	MGP_PahariEiJ_G0029464 #34	Ankmy2 (MGP_PahariEiJ_G0029463) #35	Bzw2 (MGP_PahariEiJ_G0029462) #36	Tspan13 (MGP_PahariEiJ_G0029461) #37	Agr2 (MGP_PahariEiJ_G0029460)
Rat	MODERN SPECIES	16	Foxg1 (ENSRNOG00000047891) #8	RGD1559629 (ENSRNOG00000031317)	ENSRNOG00000068318	Nova1 (ENSRNOG00000031440) #10	Stxbp6 (ENSRNOG00000004198) #12	Nrcam (ENSRNOG00000004067) #14	Pnpla8 (ENSRNOG00000039091) #15	ENSRNOG00000064508	Dnajb9 (ENSRNOG00000004006) #16	Ndufa10l1 (ENSRNOG00000062245)	Lrrn3 (ENSRNOG00000006368) #19	Immp2l (ENSRNOG00000067070) #18	Dock4 (ENSRNOG00000004823) #20	Zfp277 (ENSRNOG00000045854) #21	ENSRNOG00000069784 #23	Ifrd1 (ENSRNOG00000050997) #22	Lsmem1 (ENSRNOG00000039110) #24	Scin (ENSRNOG00000004498) #25	Arl4a (ENSRNOG00000069300) #26	LOC120093247 (ENSRNOG00000029594)	RGD1560073 (ENSRNOG00000068503)	Etv1 (ENSRNOG00000006867) #28	ENSRNOG00000066213	Dgkb (ENSRNOG00000030771) #29	Agmo (ENSRNOG00000023116) #30	Meox2 (ENSRNOG00000006588) #31	Crppa (ENSRNOG00000006199) #32	ENSRNOG00000064210	Sostdc1 (ENSRNOG00000005770) #33	RGD1559808 (ENSRNOG00000051710)	Lrrc72 (ENSRNOG00000025049) #34
Upper Galilee mountains blind mole rat	MODERN SPECIES	677											ENSNGAG00000022971	ENSNGAG00000001634	ENSNGAG00000004370	Dock4 (ENSNGAG00000023174) #20	ENSNGAG00000023537 #21	Ifrd1 (ENSNGAG00000012469) #22	Lsmem1 (ENSNGAG00000022229) #24
Lesser Egyptian jerboa	MODERN SPECIES	49	Cog5 (ENSJJAG00000016749)	Dus4l (ENSJJAG00000013626)	Bcap29 (ENSJJAG00000005153)	Slc26a4 (ENSJJAG00000022250)	ENSJJAG00000021241	Slc26a3 (ENSJJAG00000023459)	Dld (ENSJJAG00000017085)	Lamb1 (ENSJJAG00000010107)	ENSJJAG00000019287 #14	ENSJJAG00000023546 #14	Pnpla8 (ENSJJAG00000003475) #15	Dnajb9 (ENSJJAG00000009877) #16	Lrrn3 (ENSJJAG00000008302) #19	Dock4 (ENSJJAG00000009482) #20	Zfp277 (ENSJJAG00000022259) #21	Ifrd1 (ENSJJAG00000000988) #22	Scin (ENSJJAG00000002358) #25	Arl4a (ENSJJAG00000011436) #26	Etv1 (ENSJJAG00000018471) #28	ENSJJAG00000020784 #29	Agmo (ENSJJAG00000023951) #30	Meox2 (ENSJJAG00000008601) #31	ENSJJAG00000016648	Crppa (ENSJJAG00000012526) #32	Sostdc1 (ENSJJAG00000010091) #33	ENSJJAG00000023577 #34	Ankmy2 (ENSJJAG00000021161) #35	Bzw2 (ENSJJAG00000016668) #36	Tspan13 (ENSJJAG00000009446) #37	Agr2 (ENSJJAG00000008799)	Agr3 (ENSJJAG00000017440)
Kangaroo rat	MODERN SPECIES	391					ENSDORG00000029432 #14	ENSDORG00000001576 #14	ENSDORG00000029218	Pnpla8 (ENSDORG00000009929) #15	Dnajb9 (ENSDORG00000026902) #16	Lrrn3 (ENSDORG00000003984) #19	ENSDORG00000029747	ENSDORG00000026936	ENSDORG00000028272	Dock4 (ENSDORG00000007320) #20	Zfp277 (ENSDORG00000012687) #21	Ifrd1 (ENSDORG00000027806) #22	Lsmem1 (ENSDORG00000014428) #24	Scin (ENSDORG00000009917) #25	Arl4a (ENSDORG00000028437) #26	ENSDORG00000024765	Etv1 (ENSDORG00000001897) #28	Dgkb (ENSDORG00000002719) #29	Agmo (ENSDORG00000004862) #30	Meox2 (ENSDORG00000004864) #31	Crppa (ENSDORG00000015225) #32	Sostdc1 (ENSDORG00000027355) #33	ENSDORG00000010873 #34	Ankmy2 (ENSDORG00000010876) #35	Bzw2 (ENSDORG00000010878) #36	Tspan13 (ENSDORG00000030021) #37	Agr2 (ENSDORG00000007734)
Rodentia_A	ANCESTRAL SPECIES	12	ENSGT00390000011863.d	ENSGT01070000253775.a.d.a.a.a.a	ENSGT00510000047522	ENSGT01070000253775.a.d.a.a.a.b	ENSGT00550000074844	ENSGT00940000156003	ENSGT00940000162514	ENSGT00940000155419 #14	ENSGT00940000154738.a #15	ENSGT00940000162392	ENSGT00940000156246 #16	ENSGT00550000075044 #18	ENSGT00940000160513 #19	ENSGT00940000155659 #20	ENSGT00390000010852 #21	ENSGT00390000013347.a #22	ENSGT00390000010292 #24	ENSGT00940000159083 #25	ENSGT00940000154546 #26	ENSGT00940000157123 #28	ENSGT00940000159770 #29	ENSGT00440000033807 #30	ENSGT00940000154018.b #31	ENSGT00390000006412 #32	ENSGT00910000147441	ENSGT00390000014900.b.b.a #33	ENSGT00940000153289.a.b	ENSGT00390000016820 #35	ENSGT00390000012561.a #36	ENSGT00940000157010 #37	ENSGT00530000063273.b.a.b.a.b
Sciuridae	ANCESTRAL SPECIES	7	ENSGT00390000011863.d	ENSGT01070000253775.a.d.a.a.a.a	ENSGT00510000047522	ENSGT01070000253775.a.d.a.a.a.b	ENSGT00550000074844	ENSGT00940000156003	ENSGT00940000162514	ENSGT00940000155419 #14	ENSGT00940000154738.a #15	ENSGT00940000162392	ENSGT00940000156246 #16	ENSGT00550000075044 #18	ENSGT00940000160513 #19	ENSGT00940000155659 #20	ENSGT00390000010852 #21	ENSGT00390000013347.a #22	ENSGT00390000010292 #24	ENSGT00940000159083 #25	ENSGT00940000154546 #26	ENSGT00940000157123 #28	ENSGT00940000159770 #29	ENSGT00440000033807 #30	ENSGT00940000154018.b #31	ENSGT00390000006412 #32	ENSGT00910000147441	ENSGT00390000014900.b.b.a #33	ENSGT00940000153289.a.b	ENSGT00390000016820 #35	ENSGT00390000012561.a #36	ENSGT00940000157010 #37	ENSGT00530000063273.b.a.b.a.b
Marmotini	ANCESTRAL SPECIES	84						ENSGT01030000234595.B.c.b	ENSGT00940000154983.c.b	ENSGT00940000155419 #14	ENSGT00940000154738.a #15	ENSGT00940000162392	ENSGT00940000156246 #16	ENSGT00550000075044 #18	ENSGT00940000160513 #19	ENSGT00940000155659 #20	ENSGT00390000010852 #21	ENSGT00390000013347.a #22	ENSGT00390000010292 #24	ENSGT00940000159083 #25	ENSGT00940000154546 #26	ENSGT00940000157123 #28	ENSGT00940000159770 #29	ENSGT00440000033807 #30	ENSGT00940000154018.b #31	ENSGT00390000006412 #32	ENSGT00910000147441	ENSGT00390000014900.b.b.a #33	ENSGT00940000153289.a.b	ENSGT00390000016820 #35	ENSGT00390000012561.a #36	ENSGT00940000157010 #37	ENSGT00530000063273.b.a.b.a.b
Marmotini_b	ANCESTRAL SPECIES	125						ENSGT01030000234595.B.c.b	ENSGT00940000154983.c.b	ENSGT00940000155419 #14	ENSGT00940000154738.a #15	ENSGT00940000162392	ENSGT00940000156246 #16	ENSGT00940000160513 #19	ENSGT00550000075044 #18	ENSGT00940000155659 #20	ENSGT00390000010852 #21	ENSGT00390000013347.a #22	ENSGT00390000010292 #24	ENSGT00940000159083 #25	ENSGT00940000154546 #26	ENSGT00940000157123 #28	ENSGT00940000159770 #29	ENSGT00440000033807 #30	ENSGT00940000154018.b #31	ENSGT00390000006412 #32	ENSGT00910000147441	ENSGT00390000014900.b.b.a #33	ENSGT00940000153289.a.b	ENSGT00390000016820 #35	ENSGT00390000012561.a #36	ENSGT00940000157010 #37	ENSGT00530000063273.b.a.b.a.b
Squirrel	MODERN SPECIES	395														DOCK4 (ENSSTOG00000009674) #20	ZNF277 (ENSSTOG00000003727) #21	IFRD1 (ENSSTOG00000010658) #22	LSMEM1 (ENSSTOG00000010667) #24	SCIN (ENSSTOG00000011432) #25	ARL4A (ENSSTOG00000005161) #26
Arctic ground squirrel	MODERN SPECIES	13								NRCAM (ENSUPAG00010011185) #14	PNPLA8 (ENSUPAG00010011232) #15	THAP5 (ENSUPAG00010011273)	DNAJB9 (ENSUPAG00010011278) #16	IMMP2L (ENSUPAG00010011285) #18	LRRN3 (ENSUPAG00010011299) #19	DOCK4 (ENSUPAG00010011313) #20	ZNF277 (ENSUPAG00010011439) #21	IFRD1 (ENSUPAG00010011471) #22	LSMEM1 (ENSUPAG00010011487) #24	SCIN (ENSUPAG00010011491) #25	ARL4A (ENSUPAG00010011555) #26	ETV1 (ENSUPAG00010011574) #28	ENSUPAG00010012038	DGKB (ENSUPAG00010012054) #29	AGMO (ENSUPAG00010012153) #30	MEOX2 (ENSUPAG00010012171) #31	CRPPA (ENSUPAG00010012180) #32	ENSUPAG00010012254	SOSTDC1 (ENSUPAG00010012255) #33	ENSUPAG00010012260 #34	ANKMY2 (ENSUPAG00010012270) #35	BZW2 (ENSUPAG00010012281) #36	TSPAN13 (ENSUPAG00010012320) #37
Alpin marmot	MODERN SPECIES	51					GRM3 (ENSMMMG00000013459)	ELAPOR2 (ENSMMMG00000013464)	ENSMMMG00000013532	NRCAM (ENSMMMG00000013544) #14	PNPLA8 (ENSMMMG00000013634) #15	THAP5 (ENSMMMG00000013685)	DNAJB9 (ENSMMMG00000013686) #16	IMMP2L (ENSMMMG00000013704) #18	LRRN3 (ENSMMMG00000013726) #19	DOCK4 (ENSMMMG00000013747) #20	ZNF277 (ENSMMMG00000013906) #21	IFRD1 (ENSMMMG00000013925) #22	LSMEM1 (ENSMMMG00000013941) #24	SCIN (ENSMMMG00000013945) #25	ARL4A (ENSMMMG00000013991) #26	ENSMMMG00000013997	ETV1 (ENSMMMG00000014020) #28	ENSMMMG00000014863	DGKB (ENSMMMG00000014873) #29	AGMO (ENSMMMG00000014935) #30	MEOX2 (ENSMMMG00000014951) #31	CRPPA (ENSMMMG00000014965) #32	ENSMMMG00000015015	SOSTDC1 (ENSMMMG00000015016) #33	ENSMMMG00000015021	ENSMMMG00000015026	ANKMY2 (ENSMMMG00000015031) #35
Eurasian red squirrel	DUPLICATION
Eurasian red squirrel	MODERN SPECIES	17	NRCAM (ENSSVLG00005025152) #14	ENSSVLG00005025420	PNPLA8 (ENSSVLG00005008056) #15	ENSSVLG00005008198	ENSSVLG00005008263 #16	ENSSVLG00005008283	ENSSVLG00005008300 #16	ENSSVLG00005008328	ENSSVLG00005008362	ENSSVLG00005008384	ENSSVLG00005008420	IMMP2L (ENSSVLG00005008446) #18	LRRN3 (ENSSVLG00005008467) #19	DOCK4 (ENSSVLG00005008577) #20	ENSSVLG00005009041 #21	ENSSVLG00005009212 #22	LSMEM1 (ENSSVLG00005009368) #24	SCIN (ENSSVLG00005009396) #25	ENSSVLG00005009426 #26	ENSSVLG00005009439	ETV1 (ENSSVLG00005009551) #28	DGKB (ENSSVLG00005009910) #29	AGMO (ENSSVLG00005010508) #30	MEOX2 (ENSSVLG00005010613) #31	CRPPA (ENSSVLG00005010656) #32	SOSTDC1 (ENSSVLG00005010707) #33	ENSSVLG00005010779	LRRC72 (ENSSVLG00005010848)	ANKMY2 (ENSSVLG00005010918) #35	ENSSVLG00005010991 #36	TSPAN13 (ENSSVLG00005011334) #37
Eurasian red squirrel	MODERN SPECIES	15	SLC35A4 (ENSSVLG00005022047)	ENSSVLG00005022063	APBB3 (ENSSVLG00005022127)	SRA1 (ENSSVLG00005022207)	EIF4EBP3 (ENSSVLG00005022238)	ANKHD1 (ENSSVLG00005022311)	SLC4A9 (ENSSVLG00005022479)	HBEGF (ENSSVLG00005022906)	PFDN1 (ENSSVLG00005022935)	CYSTM1 (ENSSVLG00005022955)	IGIP (ENSSVLG00005022977)	PURA (ENSSVLG00005022991)	NRG2 (ENSSVLG00005023050)	PSD2 (ENSSVLG00005023287)	ENSSVLG00005023435	ENSSVLG00005011040 #22	STING1 (ENSSVLG00005011094)	SMIM33 (ENSSVLG00005011228)	ENSSVLG00005011279	DNAJC18 (ENSSVLG00005011344)	SPATA24 (ENSSVLG00005011391)	MZB1 (ENSSVLG00005011633)	SLC23A1 (ENSSVLG00005011703)	PAIP2 (ENSSVLG00005011894)	MATR3 (ENSSVLG00005011966)	SIL1 (ENSSVLG00005012349)	ENSSVLG00005012433	ENSSVLG00005012481	ENSSVLG00005012517	ENSSVLG00005012588	ENSSVLG00005012813
Hystricomorpha	ANCESTRAL SPECIES	14	ENSGT00550000074907	ENSGT00390000011863.d	ENSGT01070000253775.a.d.a.a.a.a	ENSGT00510000047522	ENSGT01070000253775.a.d.a.a.a.b	ENSGT00550000074844	ENSGT00940000156003	ENSGT00940000155419 #14	ENSGT00940000154738.a #15	ENSGT00940000162392	ENSGT00940000156246 #16	ENSGT00550000075044 #18	ENSGT00940000160513 #19	ENSGT00940000155659 #20	ENSGT00390000010852 #21	ENSGT00390000013347.a #22	ENSGT00390000010292 #24	ENSGT00940000159083 #25	ENSGT00940000154546 #26	ENSGT00940000157123 #28	ENSGT00940000159770 #29	ENSGT00940000154018.b #31	ENSGT00390000006412 #32	ENSGT00390000014900.b.b.a #33	ENSGT00940000164009 #34	ENSGT00390000016820 #35	ENSGT00390000012561.a #36	ENSGT00940000157010 #37	ENSGT00530000063273.b.a.b.a.b	ENSGT00940000154486.b.a.b	ENSGT00950000182856.a.a.a
Naked mole-rat female	DUPLICATION
Naked mole-rat female	MODERN SPECIES	5	ENSHGLG00000048059	NRCAM (ENSHGLG00000006695) #14	ENSHGLG00000016141 #15	ENSHGLG00000047483	THAP5 (ENSHGLG00000040131)	DNAJB9 (ENSHGLG00000036548) #16	ENSHGLG00000040202	ENSHGLG00000044477	ENSHGLG00000037470	LRRN3 (ENSHGLG00000045388) #19	ENSHGLG00000048809	IMMP2L (ENSHGLG00000007468) #18	DOCK4 (ENSHGLG00000014862) #20	ENSHGLG00000016417 #21	ENSHGLG00000038287	ENSHGLG00000012865 #22	ENSHGLG00000018338 #24	ENSHGLG00000008880 #25	ARL4A (ENSHGLG00000042225) #26	ETV1 (ENSHGLG00000018987) #28	DGKB (ENSHGLG00000010546) #29	MEOX2 (ENSHGLG00000007586) #31	ENSHGLG00000035563	ENSHGLG00000043657	CRPPA (ENSHGLG00000050477) #32	SOSTDC1 (ENSHGLG00000011339) #33	ENSHGLG00000041144	ENSHGLG00000009473 #34	ANKMY2 (ENSHGLG00000037184) #35	BZW2 (ENSHGLG00000011038) #36	AGR2 (ENSHGLG00000042591)
Naked mole-rat female	MODERN SPECIES	11	ENSHGLG00000040429	ENSHGLG00000019549	ENSHGLG00000000611	ENSHGLG00000016363	FANCM (ENSHGLG00000013787)	ENSHGLG00000012727	FKBP3 (ENSHGLG00000012484)	ENSHGLG00000012015	ENSHGLG00000036376	TOGARAM1 (ENSHGLG00000014098)	KLHL28 (ENSHGLG00000045138)	ENSHGLG00000009782	ENSHGLG00000010277	ENSHGLG00000047147	ENSHGLG00000044527	ENSHGLG00000049118 #22	ENSHGLG00000013709	LRFN5 (ENSHGLG00000001601)	ENSHGLG00000039345	ENSHGLG00000038712	ENSHGLG00000033347	ENSHGLG00000044414	ENSHGLG00000019895	ENSHGLG00000046212	ENSHGLG00000001513	ENSHGLG00000001136	PNN (ENSHGLG00000035633)	ENSHGLG00000005003	ENSHGLG00000005276	ENSHGLG00000004890	ENSHGLG00000004530
Hystricomorpha_a	ANCESTRAL SPECIES	41	ENSGT00550000074907	ENSGT00390000011863.d	ENSGT01070000253775.a.d.a.a.a.a	ENSGT00510000047522	ENSGT01070000253775.a.d.a.a.a.b	ENSGT00550000074844	ENSGT00940000156003	ENSGT00940000155419 #14	ENSGT00940000154738.a #15	ENSGT00940000162392	ENSGT00940000156246 #16	ENSGT00550000075044 #18	ENSGT00940000160513 #19	ENSGT00940000155659 #20	ENSGT00390000010852 #21	ENSGT00390000013347.a #22	ENSGT00390000010292 #24	ENSGT00940000159083 #25	ENSGT00940000154546 #26	ENSGT00940000157123 #28	ENSGT00940000159770 #29	ENSGT00940000154018.b #31	ENSGT00390000006412 #32	ENSGT00390000014900.b.b.a #33	ENSGT00940000153289.a.b	ENSGT00390000016820 #35	ENSGT00390000012561.a #36	ENSGT00940000157010 #37	ENSGT00530000063273.b.a.b.a.b	ENSGT00940000154486.b.a.b	ENSGT00950000182856.a.a.a
Hystricomorpha_b	ANCESTRAL SPECIES	39	ENSGT00550000074907	ENSGT00390000011863.d	ENSGT01070000253775.a.d.a.a.a.a	ENSGT00510000047522	ENSGT01070000253775.a.d.a.a.a.b	ENSGT00550000074844	ENSGT00940000156003	ENSGT00940000155419 #14	ENSGT00940000154738.a #15	ENSGT00940000162392	ENSGT00940000156246 #16	ENSGT00550000075044 #18	ENSGT00940000160513 #19	ENSGT00940000155659 #20	ENSGT00390000010852 #21	ENSGT00390000013347.a #22	ENSGT00390000010292 #24	ENSGT00940000159083 #25	ENSGT00940000154546 #26	ENSGT00940000157123 #28	ENSGT00940000159770 #29	ENSGT00940000154018.b #31	ENSGT00390000006412 #32	ENSGT00390000014900.b.b.a #33	ENSGT00940000153289.a.b	ENSGT00390000016820 #35	ENSGT00390000012561.a #36	ENSGT00940000157010 #37	ENSGT00530000063273.b.a.b.a.b	ENSGT00940000154486.b.a.b	ENSGT00950000182856.a.a.a
Long-tailed chinchilla	DUPLICATION
Long-tailed chinchilla	MODERN SPECIES	117	DUS4L (ENSCLAG00000012135)	BCAP29 (ENSCLAG00000014204)	SLC26A4 (ENSCLAG00000016035)	CBLL1 (ENSCLAG00000006401)	SLC26A3 (ENSCLAG00000006307)	DLD (ENSCLAG00000006284)	LAMB1 (ENSCLAG00000008304)	NRCAM (ENSCLAG00000005448) #14	PNPLA8 (ENSCLAG00000014342) #15	THAP5 (ENSCLAG00000004720)	DNAJB9 (ENSCLAG00000005011) #16	IMMP2L (ENSCLAG00000005360) #18	LRRN3 (ENSCLAG00000009146) #19	DOCK4 (ENSCLAG00000014437) #20	ZNF277 (ENSCLAG00000006282) #21	ENSCLAG00000004463 #22	LSMEM1 (ENSCLAG00000005373) #24	ENSCLAG00000006855	SCIN (ENSCLAG00000004560) #25	ENSCLAG00000006259 #26	ETV1 (ENSCLAG00000007240) #28	DGKB (ENSCLAG00000011522) #29	MEOX2 (ENSCLAG00000007831) #31	CRPPA (ENSCLAG00000008000) #32	SOSTDC1 (ENSCLAG00000009096) #33	ENSCLAG00000010495 #34	ANKMY2 (ENSCLAG00000010313) #35	BZW2 (ENSCLAG00000011809) #36	TSPAN13 (ENSCLAG00000012606) #37	AGR2 (ENSCLAG00000005464)	AHR (ENSCLAG00000005612)
Long-tailed chinchilla	MODERN SPECIES	138	DCLK1 (ENSCLAG00000006827)	SOHLH2 (ENSCLAG00000005516)	CCDC169 (ENSCLAG00000005286)	SPART (ENSCLAG00000005026)	CCNA1 (ENSCLAG00000004772)	RFXAP (ENSCLAG00000005593)	ENSCLAG00000004108	ALG5 (ENSCLAG00000003827)	EXOSC8 (ENSCLAG00000003456)	SUPT20H (ENSCLAG00000006314)	POSTN (ENSCLAG00000005084)	TRPC4 (ENSCLAG00000010452)	ENSCLAG00000013090	FREM2 (ENSCLAG00000012778)	STOML3 (ENSCLAG00000013188)	ENSCLAG00000012047 #22	PROSER1 (ENSCLAG00000011789)	NHLRC3 (ENSCLAG00000005695)	LHFPL6 (ENSCLAG00000005663)	COG6 (ENSCLAG00000003992)	ENSCLAG00000003491	MRPS31 (ENSCLAG00000003239)	SLC25A15 (ENSCLAG00000004865)	ENSCLAG00000004354	THSD1 (ENSCLAG00000003704)	VPS36 (ENSCLAG00000003373)	CKAP2 (ENSCLAG00000003075)	NEK3 (ENSCLAG00000006532)	ENSCLAG00000006001	ALG11 (ENSCLAG00000005320)	ATP7B (ENSCLAG00000004851)
Degu	MODERN SPECIES	56					ENSODEG00000005469	ENSODEG00000006088	HOOK1 (ENSODEG00000006209)	ENSODEG00000019295	ENSODEG00000006014	ENSODEG00000019200	ENSODEG00000005894	ENSODEG00000006131	DOCK4 (ENSODEG00000007577) #20	ZNF277 (ENSODEG00000006915) #21	ENSODEG00000006142	IFRD1 (ENSODEG00000005935) #22	LSMEM1 (ENSODEG00000006808) #24	SCIN (ENSODEG00000006899) #25	ENSODEG00000006469 #26	ENSODEG00000006884	ENSODEG00000006445	ETV1 (ENSODEG00000009379) #28	ENSODEG00000019257	DGKB (ENSODEG00000006018) #29	MEOX2 (ENSODEG00000006924) #31	CRPPA (ENSODEG00000007022) #32	ENSODEG00000005934	SOSTDC1 (ENSODEG00000005958) #33	LRRC72 (ENSODEG00000006632)	ANKMY2 (ENSODEG00000008716) #35	BZW2 (ENSODEG00000007505) #36
Guinea pig	MODERN SPECIES	31	BCAP29 (ENSCPOG00000002386)	SLC26A4 (ENSCPOG00000002391)	CBLL1 (ENSCPOG00000006196)	SLC26A3 (ENSCPOG00000014568)	ENSCPOG00000005312	LAMB1 (ENSCPOG00000013175)	NRCAM (ENSCPOG00000006412) #14	PNPLA8 (ENSCPOG00000007525) #15	ENSCPOG00000024304	THAP5 (ENSCPOG00000030486)	DNAJB9 (ENSCPOG00000038956) #16	LRRN3 (ENSCPOG00000006634) #19	IMMP2L (ENSCPOG00000008217) #18	DOCK4 (ENSCPOG00000012432) #20	ZNF277 (ENSCPOG00000024990) #21	IFRD1 (ENSCPOG00000004793) #22	LSMEM1 (ENSCPOG00000004797) #24	SCIN (ENSCPOG00000005589) #25	ARL4A (ENSCPOG00000000543) #26	ETV1 (ENSCPOG00000004289) #28	ENSCPOG00000003805 #29	MEOX2 (ENSCPOG00000026227) #31	CRPPA (ENSCPOG00000023248) #32	ENSCPOG00000000910	SOSTDC1 (ENSCPOG00000034288) #33	ENSCPOG00000011510 #34	ANKMY2 (ENSCPOG00000011512) #35	BZW2 (ENSCPOG00000011515) #36	TSPAN13 (ENSCPOG00000034690) #37	AGR2 (ENSCPOG00000000018)	AHR (ENSCPOG00000005481)