Percomorphaceae_C	ANCESTRAL SPECIES	17	ENSGT00940000161347.a.a #7	ENSGT00940000161347.a.b #8	ENSGT00940000154422.d #9	ENSGT00940000155770.b.b #11	ENSGT00940000170274	ENSGT00390000013415.b #12	ENSGT00940000155227.a #13	ENSGT00390000018729.a.f #14	ENSGT00940000156090.b #15	ENSGT01000000214630 #16	ENSGT00550000074846.jb.b #17	ENSGT00390000016167 #18	ENSGT00940000156997.b #19	ENSGT00390000018830.a.b #20	ENSGT01030000234535.C #21	ENSGT00390000005254 #22	ENSGT00390000010743.b.a #23	ENSGT00940000159569 #24	ENSGT00390000008732.b #25	ENSGT00390000011509 #26	ENSGT00940000159324 #27	ENSGT00940000157157.b.a.b #28	ENSGT00940000177433	ENSGT00950000182975.a.a.b.l #29	ENSGT00940000156880.c.a #30	ENSGT00390000013040 #31	ENSGT00940000162230 #32	ENSGT00940000162727.a.b #33	ENSGT00950000183190.a.b.b #34	ENSGT00390000005742.x #35	ENSGT00390000004067 #36
Percomorphaceae_D	ANCESTRAL SPECIES	15	ENSGT00940000161347.a.a #7	ENSGT00940000161347.a.b #8	ENSGT00940000154422.d #9	ENSGT00940000155770.b.b #11	ENSGT00940000170274	ENSGT00390000013415.b #12	ENSGT00940000155227.a #13	ENSGT00390000018729.a.f #14	ENSGT00940000156090.b #15	ENSGT01000000214630 #16	ENSGT00550000074846.jb.b #17	ENSGT00390000016167 #18	ENSGT00940000156997.b #19	ENSGT00390000018830.a.b #20	ENSGT01030000234535.C #21	ENSGT00390000005254 #22	ENSGT00390000010743.b.a #23	ENSGT00940000159569 #24	ENSGT00390000008732.b #25	ENSGT00390000011509 #26	ENSGT00940000159324 #27	ENSGT00940000157157.b.a.b #28	ENSGT00950000182975.a.a.b.l #29	ENSGT00940000156880.c.a #30	ENSGT00390000013040 #31	ENSGT00940000162230 #32	ENSGT00940000162727.a.b #33	ENSGT00950000183190.a.b.b #34	ENSGT00390000005742.x #35	ENSGT00390000004067 #36	ENSGT00390000006287 #37
Anabantaria	ANCESTRAL SPECIES	12	ENSGT00940000161347.a.a #7	ENSGT00940000161347.a.b #8	ENSGT00940000154422.d #9	ENSGT00940000155770.b.b #11	ENSGT00940000170274	ENSGT00390000013415.b #12	ENSGT00940000155227.a #13	ENSGT00390000018729.a.f #14	ENSGT00940000156090.b #15	ENSGT01000000214630 #16	ENSGT00550000074846.jb.b #17	ENSGT00390000016167 #18	ENSGT00940000156997.b #19	ENSGT00390000018830.a.b #20	ENSGT01030000234535.C #21	ENSGT00390000005254 #22	ENSGT00390000010743.b.a #23	ENSGT00940000159569 #24	ENSGT00390000008732.b #25	ENSGT00390000011509 #26	ENSGT00940000159324 #27	ENSGT00940000157157.b.a.b #28	ENSGT00950000182975.a.a.b.l #29	ENSGT00940000156880.c.a #30	ENSGT00390000013040 #31	ENSGT00940000162230 #32	ENSGT00940000162727.a.b #33	ENSGT00950000183190.a.b.b #34	ENSGT00390000005742.x #35	ENSGT00390000004067 #36	ENSGT00390000006287 #37
Zig-zag eel	MODERN SPECIES	3	ENSMAMG00000017014 #7	gna14 (ENSMAMG00000017019) #8	prune2 (ENSMAMG00000017035) #9	ENSMAMG00000017069 #10	ENSMAMG00000017089 #11	ENSMAMG00000017146 #12	thbs4b (ENSMAMG00000017169) #13	ENSMAMG00000017218 #14	ENSMAMG00000017288 #15	hwa (ENSMAMG00000017297) #16	atp5fa1 (ENSMAMG00000017312) #17	C18orf25 (ENSMAMG00000017338) #18	RNF165 (ENSMAMG00000017346) #19	LOXHD1 (ENSMAMG00000017376) #20	ST8SIA5 (ENSMAMG00000017453) #21	rpl37 (ENSMAMG00000025959) #22	ENSMAMG00000017493 #23	ENSMAMG00000017513 #24	ENSMAMG00000017519 #25	ENSMAMG00000017628 #26	ENSMAMG00000017538 #27	ENSMAMG00000017642 #28	ENSMAMG00000017705 #29	ENSMAMG00000017747 #30	ENSMAMG00000017804 #31	ENSMAMG00000017843 #32	ENSMAMG00000027166 #33	cdk5rap2 (ENSMAMG00000017869) #34	NUP188 (ENSMAMG00000017976) #35	dolk (ENSMAMG00000018058) #36	phyhd1 (ENSMAMG00000018063) #37
Anabantoidei	ANCESTRAL SPECIES	16	ENSGT00940000161347.a.a #7	ENSGT00940000161347.a.b #8	ENSGT00940000154422.d #9	ENSGT00940000155770.b.b #11	ENSGT00940000170274	ENSGT00390000013415.b #12	ENSGT00940000155227.a #13	ENSGT00390000018729.a.f #14	ENSGT00940000156090.b #15	ENSGT01000000214630 #16	ENSGT00550000074846.jb.b #17	ENSGT00390000016167 #18	ENSGT00940000156997.b #19	ENSGT00390000018830.a.b #20	ENSGT01030000234535.C #21	ENSGT00390000005254 #22	ENSGT00390000010743.b.a #23	ENSGT00940000159569 #24	ENSGT00390000008732.b #25	ENSGT00390000011509 #26	ENSGT00940000159324 #27	ENSGT00940000157157.b.a.b #28	ENSGT00950000182975.a.a.b.l #29	ENSGT00940000156880.c.a #30	ENSGT00390000013040 #31	ENSGT00940000162230 #32	ENSGT00950000183190.a.b.b #34	ENSGT00390000005742.x #35	ENSGT00390000004067 #36	ENSGT00390000006287 #37	ENSGT00940000154043.A.j.b
Siamese fighting fish	MODERN SPECIES	3	ntrk2b (ENSBSLG00000002567)	hnrpkl (ENSBSLG00000002500)	gna14 (ENSBSLG00000002432) #8	prune2 (ENSBSLG00000020016) #9	ENSBSLG00000019298 #11	ENSBSLG00000019281	zgc:73226 (ENSBSLG00000019274) #12	thbs4b (ENSBSLG00000018097) #13	ENSBSLG00000018074 #14	zgc:122979 (ENSBSLG00000018070) #15	hwa (ENSBSLG00000018063) #16	atp5fa1 (ENSBSLG00000018010) #17	zgc:77838 (ENSBSLG00000017996) #18	RNF165 (ENSBSLG00000017988) #19	st8sia5 (ENSBSLG00000017697) #21	rpl37 (ENSBSLG00000017665) #22	PTGS1 (ENSBSLG00000016014) #23	pdcl (ENSBSLG00000015987) #24	rpl28 (ENSBSLG00000015979) #25	ENSBSLG00000015976 #26	SEC16A (ENSBSLG00000015741) #27	notch1a (ENSBSLG00000012905) #28	camsap1a (ENSBSLG00000012780) #29	KCNT1 (ENSBSLG00000012710) #30	psmd5 (ENSBSLG00000012692) #31	B3GALT9 (ENSBSLG00000012689) #32	ENSBSLG00000012589 #34	NUP188 (ENSBSLG00000011267) #35	dolk (ENSBSLG00000011240) #36	phyhd1 (ENSBSLG00000011217) #37	lrrc8aa (ENSBSLG00000011213)
Climbing perch	MODERN SPECIES	3	gna14 (ENSATEG00000014393) #8	prune2 (ENSATEG00000014366) #9	ENSATEG00000014327 #11	ENSATEG00000029519	ENSATEG00000014305 #12	thbs4b (ENSATEG00000014243) #13	ENSATEG00000014122 #14	ENSATEG00000014105 #15	hwa (ENSATEG00000014095) #16	atp5fa1 (ENSATEG00000014074) #17	C18orf25 (ENSATEG00000014053) #18	RNF165 (ENSATEG00000014022) #19	ENSATEG00000014014 #20	ENSATEG00000013978 #20	ST8SIA5 (ENSATEG00000028585) #21	rpl37 (ENSATEG00000013933) #22	ENSATEG00000013897 #23	ENSATEG00000013860 #24	ENSATEG00000013839 #25	ENSATEG00000013831 #26	ENSATEG00000013761 #27	ENSATEG00000013629 #28	ENSATEG00000029256 #29	ENSATEG00000013502 #30	ENSATEG00000013483 #31	ENSATEG00000013473 #32	cdk5rap2 (ENSATEG00000013264) #34	NUP188 (ENSATEG00000013129) #35	dolk (ENSATEG00000013104) #36	phyhd1 (ENSATEG00000013069) #37	lrrc8aa (ENSATEG00000013062)
Carangaria	ANCESTRAL SPECIES	17	ENSGT00940000161347.a.a #7	ENSGT00940000161347.a.b #8	ENSGT00940000154422.d #9	ENSGT00940000155770.b.b #11	ENSGT00940000170274	ENSGT00390000013415.b #12	ENSGT00940000155227.a #13	ENSGT00390000018729.a.f #14	ENSGT00940000156090.b #15	ENSGT01000000214630 #16	ENSGT00550000074846.jb.b #17	ENSGT00390000016167 #18	ENSGT00940000156997.b #19	ENSGT00390000018830.a.b #20	ENSGT01030000234535.C #21	ENSGT00390000005254 #22	ENSGT00390000010743.b.a #23	ENSGT00940000159569 #24	ENSGT00390000008732.b #25	ENSGT00390000011509 #26	ENSGT00940000159324 #27	ENSGT00940000157157.b.a.b #28	ENSGT00950000182975.a.a.b.l #29	ENSGT00940000156880.c.a #30	ENSGT00390000013040 #31	ENSGT00940000162230 #32	ENSGT00940000162727.a.b #33	ENSGT00950000183190.a.b.b #34	ENSGT00390000005742.x #35	ENSGT00390000004067 #36	ENSGT00390000006287 #37
Carangaria_A	ANCESTRAL SPECIES	18	ENSGT00940000161347.a.a #7	ENSGT00940000161347.a.b #8	ENSGT00940000154422.d #9	ENSGT00940000155770.b.b #11	ENSGT00940000170274	ENSGT00390000013415.b #12	ENSGT00940000155227.a #13	ENSGT00390000018729.a.f #14	ENSGT00940000156090.b #15	ENSGT01000000214630 #16	ENSGT00550000074846.jb.b #17	ENSGT00390000016167 #18	ENSGT00940000156997.b #19	ENSGT00390000018830.a.b #20	ENSGT01030000234535.C #21	ENSGT00390000005254 #22	ENSGT00390000010743.b.a #23	ENSGT00940000159569 #24	ENSGT00390000008732.b #25	ENSGT00390000011509 #26	ENSGT00940000159324 #27	ENSGT00940000157157.b.a.b #28	ENSGT00950000182975.a.a.b.l #29	ENSGT00940000156880.c.a #30	ENSGT00390000013040 #31	ENSGT00940000162230 #32	ENSGT00940000162727.a.b #33	ENSGT00950000183190.a.b.b #34	ENSGT00390000005742.x #35	ENSGT00390000004067 #36	ENSGT00390000006287 #37
Seriola	ANCESTRAL SPECIES	19	ENSGT00940000161347.a.b #8	ENSGT00940000154422.d #9	ENSGT00940000155770.b.b #11	ENSGT00940000170274	ENSGT00390000013415.b #12	ENSGT00940000155227.a #13	ENSGT00390000018729.a.f #14	ENSGT00600000085659.b	ENSGT00940000156090.b #15	ENSGT01000000214630 #16	ENSGT00550000074846.jb.b #17	ENSGT00390000016167 #18	ENSGT00940000156997.b #19	ENSGT00390000018830.a.b #20	ENSGT01030000234535.C #21	ENSGT00390000005254 #22	ENSGT00390000010743.b.a #23	ENSGT00940000159569 #24
Yellowtail amberjack	MODERN SPECIES	2796	gna14 (ENSSLDG00000005622) #8	prune2 (ENSSLDG00000005588) #9	ENSSLDG00000005501 #11	ENSSLDG00000005480	zgc:73226 (ENSSLDG00000005473) #12	thbs4b (ENSSLDG00000005407) #13	ENSSLDG00000005269 #14	ENSSLDG00000005223	zgc:122979 (ENSSLDG00000005215) #15	hwa (ENSSLDG00000005194) #16	ATP5F1A (ENSSLDG00000005152) #17	zgc:77838 (ENSSLDG00000005097) #18	RNF165 (ENSSLDG00000005052) #19	LOXHD1 (ENSSLDG00000004940) #20	st8sia5 (ENSSLDG00000004842) #21	rpl37 (ENSSLDG00000004788) #22	ptgs1 (ENSSLDG00000004750) #23	pdcl (ENSSLDG00000004736) #24
Barramundi perch	MODERN SPECIES	101	hnrpkl (ENSLCAG00010002964)	ENSLCAG00010002954 #7	ENSLCAG00010002949	prune2 (ENSLCAG00010002946) #9	ENSLCAG00010002896 #11	ENSLCAG00010002878	zgc:73226 (ENSLCAG00010002874) #12	thbs4b (ENSLCAG00010002473) #13	ENSLCAG00010002380 #14	zgc:122979 (ENSLCAG00010002377) #15	atp5fa1 (ENSLCAG00010002375) #17	zgc:77838 (ENSLCAG00010002371) #18	RNF165 (ENSLCAG00010002367) #19	LOXHD1 (ENSLCAG00010002359) #20	st8sia5 (ENSLCAG00010002346) #21	rpl37 (ENSLCAG00010002333) #22	ptgs1 (ENSLCAG00010002329) #23	pdcl (ENSLCAG00010002322) #24	rpl28 (ENSLCAG00010002317) #25	ENSLCAG00010002313 #26	ENSLCAG00010002099 #27	notch1a (ENSLCAG00010001977) #28	camsap1a (ENSLCAG00010001967) #29	KCNT1 (ENSLCAG00010001943) #30	psmd5 (ENSLCAG00010001921) #31	B3GALT9 (ENSLCAG00010001917) #32	ENSLCAG00010001866 #33	ENSLCAG00010001771 #34	NUP188 (ENSLCAG00010001675) #35	dolk (ENSLCAG00010001654) #36	phyhd1 (ENSLCAG00010001651) #37
Pleuronectoidei	ANCESTRAL SPECIES	7	ENSGT00940000153434.c.b	ENSGT00940000161347.a.a #7	ENSGT00940000161347.a.b #8	ENSGT00940000154422.d #9	ENSGT00940000155770.b.b #11	ENSGT00940000170274	ENSGT00390000013415.b #12	ENSGT00940000155227.a #13	ENSGT00940000156090.b #15	ENSGT01000000214630 #16	ENSGT00550000074846.jb.b #17	ENSGT00390000016167 #18	ENSGT00940000156997.b #19	ENSGT00390000018830.a.b #20	ENSGT01030000234535.C #21	ENSGT00390000005254 #22	ENSGT00390000010743.b.a #23	ENSGT00940000159569 #24	ENSGT00390000008732.b #25	ENSGT00390000011509 #26	ENSGT00940000159324 #27	ENSGT00940000157157.b.a.b #28	ENSGT00950000182975.a.a.b.l #29	ENSGT00940000156880.c.a #30	ENSGT00390000013040 #31	ENSGT00940000162230 #32	ENSGT00950000183190.a.b.b #34	ENSGT00390000005742.x #35	ENSGT00390000004067 #36	ENSGT00390000006287 #37	ENSGT00940000154043.A.j.b
Turbot	MODERN SPECIES	7	hnrpkl (ENSSMAG00000007969)	ENSSMAG00000008012 #7	gna14 (ENSSMAG00000008031) #8	prune2 (ENSSMAG00000008036) #9	ENSSMAG00000008072 #11	ENSSMAG00000008084	ENSSMAG00000008091 #12	thbs4b (ENSSMAG00000008125) #13	ENSSMAG00000008185 #15	hwa (ENSSMAG00000008544) #16	atp5fa1 (ENSSMAG00000008519) #17	C18orf25 (ENSSMAG00000008557) #18	RNF165 (ENSSMAG00000032415) #19	LOXHD1 (ENSSMAG00000008589) #20	ST8SIA5 (ENSSMAG00000008655) #21	rpl37 (ENSSMAG00000008688) #22	ENSSMAG00000008708 #23	ENSSMAG00000008737 #24	ENSSMAG00000008756 #25	ENSSMAG00000008778	ENSSMAG00000008794 #27	ENSSMAG00000008857 #28	ENSSMAG00000008955 #29	ENSSMAG00000008991 #30	ENSSMAG00000009172 #31	ENSSMAG00000028675 #32	ENSSMAG00000009277 #34	NUP188 (ENSSMAG00000009352) #35	dolk (ENSSMAG00000009434) #36	phyhd1 (ENSSMAG00000009440) #37	lrrc8aa (ENSSMAG00000009462)
Tongue sole	MODERN SPECIES	5	gna14 (ENSCSEG00000001032) #8	prune2 (ENSCSEG00000001044) #9	ENSCSEG00000001049	ENSCSEG00000001055 #11	ENSCSEG00000001087	zgc:73226 (ENSCSEG00000001089) #12	thbs4b (ENSCSEG00000001095) #13	ENSCSEG00000001109	zgc:122979 (ENSCSEG00000001112) #15	hwa (ENSCSEG00000001116) #16	atp5fa1 (ENSCSEG00000001126) #17	zgc:77838 (ENSCSEG00000001156) #18	RNF165 (ENSCSEG00000001163) #19	LOXHD1 (ENSCSEG00000001178) #20	st8sia5 (ENSCSEG00000001273) #21	rpl37 (ENSCSEG00000001286) #22	ptgs1 (ENSCSEG00000001302) #23	pdcl (ENSCSEG00000001308) #24	rpl28 (ENSCSEG00000001312) #25	ENSCSEG00000001317 #26	ENSCSEG00000001326 #27	ENSCSEG00000001345	notch1a (ENSCSEG00000001351) #28	camsap1a (ENSCSEG00000001372) #29	KCNT1 (ENSCSEG00000001395) #30	psmd5 (ENSCSEG00000001432) #31	ENSCSEG00000001439	ENSCSEG00000001443 #33	ENSCSEG00000001446	ENSCSEG00000001451 ##34	setd1ba (ENSCSEG00000001458)
Eupercaria	ANCESTRAL SPECIES	13	ENSGT00940000161347.a.a #7	ENSGT00940000161347.a.b #8	ENSGT00940000154422.d #9	ENSGT00940000155770.b.b #11	ENSGT00940000170274	ENSGT00390000013415.b #12	ENSGT00940000155227.a #13	ENSGT00390000018729.a.f #14	ENSGT00940000156090.b #15	ENSGT01000000214630 #16	ENSGT00550000074846.jb.b #17	ENSGT00390000016167 #18	ENSGT00940000156997.b #19	ENSGT00390000018830.a.b #20	ENSGT01030000234535.C #21	ENSGT00390000005254 #22	ENSGT00390000010743.b.a #23	ENSGT00940000159569 #24	ENSGT00390000008732.b #25	ENSGT00390000011509 #26	ENSGT00940000159324 #27	ENSGT00940000157157.b.a.b #28	ENSGT00940000177433	ENSGT00950000182975.a.a.b.l #29	ENSGT00940000156880.c.a #30	ENSGT00390000013040 #31	ENSGT00940000162230 #32	ENSGT00940000162727.a.b #33	ENSGT00950000183190.a.b.b #34	ENSGT00390000005742.x #35	ENSGT00390000004067 #36
Tetraodontidae	ANCESTRAL SPECIES	19	ENSGT00940000153434.c.b	ENSGT00940000161347.a.a #7	ENSGT00940000161347.a.b #8	ENSGT00940000154422.d #9	ENSGT00940000155770.b.b #11	ENSGT00940000170274	ENSGT00390000013415.b #12	ENSGT00940000155227.a #13	ENSGT00940000156090.b #15	ENSGT01000000214630 #16	ENSGT00550000074846.jb.b #17	ENSGT00390000016167 #18	ENSGT00940000156997.b #19	ENSGT00390000018830.a.b #20	ENSGT01030000234535.C #21	ENSGT00390000005254 #22	ENSGT00390000010743.b.a #23	ENSGT00940000159569 #24	ENSGT00390000008732.b #25	ENSGT00390000011509 #26	ENSGT00940000159324 #27	ENSGT00940000157157.b.a.b #28	ENSGT00950000182975.a.a.b.l #29	ENSGT00940000156880.c.a #30	ENSGT00390000013040 #31	ENSGT00940000162230 #32	ENSGT00940000162727.a.b #33	ENSGT00950000183190.a.b.b #34	ENSGT00390000005742.x #35	ENSGT00390000004067 #36	ENSGT00390000006287 #37
Tetraodon	MODERN SPECIES	19	kcmf1 (ENSTNIG00000007552)	ntrk2b (ENSTNIG00000007553)	hnrpkl (ENSTNIG00000007554)	gna14 (ENSTNIG00000007555) #8	prune2 (ENSTNIG00000007556) #9	ENSTNIG00000007557 #11	ENSTNIG00000000733	zgc:73226 (ENSTNIG00000014273) #12	thbs4b (ENSTNIG00000014272) #13	zgc:122979 (ENSTNIG00000014271) #15	atp5fa1 (ENSTNIG00000007010) #17	zgc:77838 (ENSTNIG00000007009) #18	RNF165 (ENSTNIG00000006462) #19	LOXHD1 (ENSTNIG00000006461) #20	st8sia5 (ENSTNIG00000006460) #21	rpl37 (ENSTNIG00000006459) #22	ptgs1 (ENSTNIG00000006458) #23	ENSTNIG00000001070 #24	rpl28 (ENSTNIG00000002577) #25	ENSTNIG00000002576 #26	SEC16A (ENSTNIG00000002575) #27	notch1a (ENSTNIG00000007203) #28	camsap1a (ENSTNIG00000018750) #29	KCNT1 (ENSTNIG00000018751) #30	psmd5 (ENSTNIG00000018752) #31	ENSTNIG00000018753 #33	ENSTNIG00000018754 #34	NUP188 (ENSTNIG00000018755) ##35	dolk (ENSTNIG00000018757) #36	phyhd1 (ENSTNIG00000018758) #37	lrrc8aa (ENSTNIG00000018759)
Fugu	MODERN SPECIES	18	ENSTRUG00000033321	hnrpkl (ENSTRUG00000000535)	ENSTRUG00000000423 #7	gna14 (ENSTRUG00000025929) #8	prune2 (ENSTRUG00000017951) #9	ENSTRUG00000025919 #11	ENSTRUG00000028846	zgc:73226 (ENSTRUG00000017987) #12	thbs4b (ENSTRUG00000017990) #13	zgc:122979 (ENSTRUG00000018029) #15	hwa (ENSTRUG00000024774) #16	atp5fa1 (ENSTRUG00000018034) #17	zgc:77838 (ENSTRUG00000025151) #18	RNF165 (ENSTRUG00000018046) #19	st8sia5 (ENSTRUG00000018059) #21	rpl37 (ENSTRUG00000018067) #22	PTGS1 (ENSTRUG00000018069) #23	pdcl (ENSTRUG00000024706) #24	rpl28 (ENSTRUG00000025383) #25	ENSTRUG00000031543 #26	ENSTRUG00000018095 #27	notch1a (ENSTRUG00000018113) #28	KCNT1 (ENSTRUG00000021073) #30	psmd5 (ENSTRUG00000018185) #31	B3GALT9 (ENSTRUG00000018190) #32	ENSTRUG00000027922 #33	ENSTRUG00000018229 #34	NUP188 (ENSTRUG00000018293) #35	dolk (ENSTRUG00000018325) #36	lrrc8aa (ENSTRUG00000018330)	dnlz (ENSTRUG00000032319)
Eupecaria_A	ANCESTRAL SPECIES	14	ENSGT00940000161347.a.a #7	ENSGT00940000161347.a.b #8	ENSGT00940000154422.d #9	ENSGT00940000155770.b.b #11	ENSGT00940000170274	ENSGT00390000013415.b #12	ENSGT00940000155227.a #13	ENSGT00390000018729.a.f #14	ENSGT00940000156090.b #15	ENSGT01000000214630 #16	ENSGT00550000074846.jb.b #17	ENSGT00390000016167 #18	ENSGT00940000156997.b #19	ENSGT00390000018830.a.b #20	ENSGT01030000234535.C #21	ENSGT00390000005254 #22	ENSGT00390000010743.b.a #23	ENSGT00940000159569 #24	ENSGT00390000008732.b #25	ENSGT00390000011509 #26	ENSGT00940000159324 #27	ENSGT00940000157157.b.a.b #28	ENSGT00940000177433	ENSGT00950000182975.a.a.b.l #29	ENSGT00940000156880.c.a #30	ENSGT00390000013040 #31	ENSGT00940000162230 #32	ENSGT00940000162727.a.b #33	ENSGT00950000183190.a.b.b #34	ENSGT00390000005742.x #35	ENSGT00390000004067 #36
Eupecaria_B	ANCESTRAL SPECIES	14	ENSGT00940000161347.a.a #7	ENSGT00940000161347.a.b #8	ENSGT00940000154422.d #9	ENSGT00940000155770.b.b #11	ENSGT00940000170274	ENSGT00390000013415.b #12	ENSGT00940000155227.a #13	ENSGT00390000018729.a.f #14	ENSGT00940000156090.b #15	ENSGT01000000214630 #16	ENSGT00550000074846.jb.b #17	ENSGT00390000016167 #18	ENSGT00940000156997.b #19	ENSGT00390000018830.a.b #20	ENSGT01030000234535.C #21	ENSGT00390000005254 #22	ENSGT00390000010743.b.a #23	ENSGT00940000159569 #24	ENSGT00390000008732.b #25	ENSGT00390000011509 #26	ENSGT00940000159324 #27	ENSGT00940000157157.b.a.b #28	ENSGT00950000182975.a.a.b.l #29	ENSGT00940000156880.c.a #30	ENSGT00390000013040 #31	ENSGT00940000162230 #32	ENSGT00940000162727.a.b #33	ENSGT00950000183190.a.b.b #34	ENSGT00390000005742.x #35	ENSGT00390000004067 #36	ENSGT00390000006287 #37
Perciformes	ANCESTRAL SPECIES	16	ENSGT00940000161347.a.a.d #7	ENSGT00940000161347.a.b #8	ENSGT00940000154422.d #9	ENSGT00940000155770.b.b #11	ENSGT00940000170274	ENSGT00390000013415.b #12	ENSGT00940000155227.a #13	ENSGT00390000018729.a.f #14	ENSGT00940000156090.b #15	ENSGT01000000214630 #16	ENSGT00550000074846.jb.b #17	ENSGT00390000016167 #18	ENSGT00940000156997.b #19	ENSGT00390000018830.a.b #20	ENSGT01030000234535.C #21	ENSGT00390000005254 #22	ENSGT00390000010743.b.a #23	ENSGT00940000159569 #24	ENSGT00390000008732.b #25	ENSGT00390000011509 #26	ENSGT00940000159324 #27	ENSGT00940000157157.b.a.b #28	ENSGT00950000182975.a.a.b.l #29	ENSGT00940000156880.c.a #30	ENSGT00390000013040 #31	ENSGT00940000162230 #32	ENSGT00940000162727.a.b #33	ENSGT00950000183190.a.b.b #34	ENSGT00390000005742.x #35	ENSGT00390000004067 #36	ENSGT00390000006287 #37
Perciformes_a	ANCESTRAL SPECIES	12	ENSGT00940000161347.a.a.c.b #7	ENSGT00940000161347.a.b #8	ENSGT00940000154422.d #9	ENSGT00940000155770.b.b #11	ENSGT00940000170274	ENSGT00390000013415.b #12	ENSGT00940000155227.a #13	ENSGT00390000018729.a.f #14	ENSGT00940000156090.b #15	ENSGT01000000214630 #16	ENSGT00550000074846.jb.b #17	ENSGT00390000016167 #18	ENSGT00940000156997.b #19	ENSGT00390000018830.a.b #20	ENSGT01030000234535.C #21	ENSGT00390000005254 #22	ENSGT00390000010743.b.a #23	ENSGT00940000159569 #24	ENSGT00390000008732.b #25	ENSGT00390000011509 #26	ENSGT00940000159324 #27	ENSGT00940000157157.b.a.b #28	ENSGT00950000182975.a.a.b.l #29	ENSGT00940000156880.c.a #30	ENSGT00390000013040 #31	ENSGT00940000162230 #32	ENSGT00940000162727.a.b #33	ENSGT00950000183190.a.b.b #34	ENSGT00390000005742.x #35	ENSGT00390000004067 #36	ENSGT00390000006287 #37
Pike perch	MODERN SPECIES	33	ENSSLUG00000017076 #7	ENSSLUG00000017079	prune2 (ENSSLUG00000017092) #9	ENSSLUG00000017129 #11	ENSSLUG00000017225	zgc:73226 (ENSSLUG00000005332) #12	thbs4b (ENSSLUG00000005766) #13	ENSSLUG00000012975 #14	zgc:122979 (ENSSLUG00000013034) #15	hwa (ENSSLUG00000013038) #16	atp5fa1 (ENSSLUG00000013047) #17	zgc:77838 (ENSSLUG00000013069) #18	RNF165 (ENSSLUG00000013083) #19	LOXHD1 (ENSSLUG00000013122) #20	st8sia5 (ENSSLUG00000013165) #21	rpl37 (ENSSLUG00000013190) #22	ptgs1 (ENSSLUG00000013244) #23	pdcl (ENSSLUG00000014454) #24	rpl28 (ENSSLUG00000014460) #25	ENSSLUG00000014465 #26	SEC16A (ENSSLUG00000014475) #27	notch1a (ENSSLUG00000014616) #28	camsap1a (ENSSLUG00000015272) #29	KCNT1 (ENSSLUG00000015334) #30	psmd5 (ENSSLUG00000015606) #31	B3GALT9 (ENSSLUG00000015634) #32	ENSSLUG00000015642	cdk5rap2 (ENSSLUG00000015650) #34	ENSSLUG00000015677 #34	NUP188 (ENSSLUG00000015753) #35	dolk (ENSSLUG00000015946) #36
Cottioidei	ANCESTRAL SPECIES	18	ENSGT00940000153434.c.b	ENSGT00940000161347.a.a.d #7	ENSGT00940000161347.a.b #8	ENSGT00940000154422.d #9	ENSGT00940000155770.b.b #11	ENSGT00390000013415.b #12	ENSGT00940000155227.a #13	ENSGT00390000018729.a.f #14	ENSGT00940000156090.b #15	ENSGT01000000214630 #16	ENSGT00550000074846.jb.b #17	ENSGT00390000016167 #18	ENSGT00940000156997.b #19	ENSGT00390000018830.a.b #20	ENSGT01030000234535.C #21	ENSGT00390000005254 #22	ENSGT00390000010743.b.a #23	ENSGT00940000159569 #24	ENSGT00390000008732.b #25	ENSGT00390000011509 #26	ENSGT00940000159324 #27	ENSGT00940000157157.b.a.b #28	ENSGT00950000182975.a.a.b.l #29	ENSGT00940000156880.c.a #30	ENSGT00940000163466	ENSGT00950000183190.a.b.b #34	ENSGT00390000005742.x #35	ENSGT00390000004067 #36	ENSGT00390000006287 #37	ENSGT00940000154043.A.j.b	ENSGT00390000008220
Lumpfish	MODERN SPECIES	3	ntrk2b (ENSCLMG00005022322)	hnrpkl (ENSCLMG00005022318)	ENSCLMG00005022316 #7	gna14 (ENSCLMG00005022315) #8	prune2 (ENSCLMG00005022314) #9	ENSCLMG00005022313 #11	zgc:73226 (ENSCLMG00005022312) #12	thbs4b (ENSCLMG00005020990) #13	zgc:122979 (ENSCLMG00005020907) #15	hwa (ENSCLMG00005020905) #16	atp5fa1 (ENSCLMG00005020748) #17	zgc:77838 (ENSCLMG00005020738) #18	RNF165 (ENSCLMG00005020736) #19	LOXHD1 (ENSCLMG00005020728) #20	st8sia5 (ENSCLMG00005020716) #21	rpl37 (ENSCLMG00005020708) #22	PTGS1 (ENSCLMG00005019625) #23	pdcl (ENSCLMG00005019619) #24	rpl28 (ENSCLMG00005019618) #25	ENSCLMG00005019617 #26	ENSCLMG00005019139 #27	notch1a (ENSCLMG00005018745) #28	ENSCLMG00005018730	ENSCLMG00005018729	ENSCLMG00005018727 #29	srek1 (ENSCLMG00005018725)	ankra2 (ENSCLMG00005018718)	btf3 (ENSCLMG00005018714)	foxd1 (ENSCLMG00005018713)	fcho2 (ENSCLMG00005017607)	TNPO1 (ENSCLMG00005017598)
Stickleback	MODERN SPECIES	13	hnrpkl (ENSGACG00000016211)	ENSGACG00000016186 #7	ENSGACG00000016180	prune2 (ENSGACG00000016173) #9	ENSGACG00000016171 #11	ENSGACG00000016170	zgc:73226 (ENSGACG00000016169) #12	thbs4b (ENSGACG00000016162) #13	ENSGACG00000016160 #14	zgc:122979 (ENSGACG00000016157) #15	atp5fa1 (ENSGACG00000016142) #17	zgc:77838 (ENSGACG00000016140) #18	RNF165 (ENSGACG00000016138) #19	LOXHD1 (ENSGACG00000016133) #20	st8sia5 (ENSGACG00000016126) #21	rpl37 (ENSGACG00000016123) #22	PTGS1 (ENSGACG00000016097) #23	pdcl (ENSGACG00000016094) #24	rpl28 (ENSGACG00000016089) #25	SEC16A (ENSGACG00000016085) #27	notch1a (ENSGACG00000016083) #28	camsap1a (ENSGACG00000016079) #29	KCNT1 (ENSGACG00000016074) #30	ENSGACG00000016062 #33	ENSGACG00000016058 #34	NUP188 (ENSGACG00000016051) #35	phyhd1 (ENSGACG00000016040) #37	lrrc8aa (ENSGACG00000016038)	dnlz (ENSGACG00000016036)	uck1 (ENSGACG00000016027)	rapgef1b (ENSGACG00000016022)
Eupecaria_C	ANCESTRAL SPECIES	9	ENSGT00940000161347.a.a #7	ENSGT00940000161347.a.b #8	ENSGT00940000154422.d #9	ENSGT00940000155770.b.b #11	ENSGT00940000170274	ENSGT00390000013415.b #12	ENSGT00940000155227.a #13	ENSGT00390000018729.a.f #14	ENSGT00940000156090.b #15	ENSGT01000000214630 #16	ENSGT00550000074846.jb.b #17	ENSGT00390000016167 #18	ENSGT00940000156997.b #19	ENSGT00390000018830.a.b #20	ENSGT01030000234535.C #21	ENSGT00390000005254 #22	ENSGT00390000010743.b.a #23	ENSGT00940000159569 #24	ENSGT00390000008732.b #25	ENSGT00390000011509 #26	ENSGT00940000159324 #27	ENSGT00940000157157.b.a.b #28	ENSGT00950000182975.a.a.b.l #29	ENSGT00940000156880.c.a #30	ENSGT00390000013040 #31	ENSGT00940000162230 #32	ENSGT00940000162727.a.b #33	ENSGT00950000183190.a.b.b #34	ENSGT00390000005742.x #35	ENSGT00390000004067 #36	ENSGT00390000006287 #37
Gilthead seabream	MODERN SPECIES	3	ENSSAUG00010006214 #7	ENSSAUG00010006208	prune2 (ENSSAUG00010006201) #9	ENSSAUG00010006192 #11	ENSSAUG00010006188	zgc:73226 (ENSSAUG00010006180) #12	thbs4b (ENSSAUG00010001952) #13	ENSSAUG00010001870 #14	zgc:122979 (ENSSAUG00010001865) #15	hwa (ENSSAUG00010001860) #16	atp5fa1 (ENSSAUG00010001552) #17	zgc:77838 (ENSSAUG00010001499) #18	RNF165 (ENSSAUG00010021687) #19	LOXHD1 (ENSSAUG00010021665) #20	st8sia5 (ENSSAUG00010021660) #21	rpl37 (ENSSAUG00010021655) #22	PTGS1 (ENSSAUG00010021005) #23	pdcl (ENSSAUG00010020998) #24	rpl28 (ENSSAUG00010020997) #25	ENSSAUG00010020994 #26	SEC16A (ENSSAUG00010019069) #27	notch1a (ENSSAUG00010015439) #28	camsap1a (ENSSAUG00010015121) #29	KCNT1 (ENSSAUG00010014789) #30	psmd5 (ENSSAUG00010014769) #31	B3GALT9 (ENSSAUG00010014763) #32	ENSSAUG00010014760 #33	ENSSAUG00010014714 #34	NUP188 (ENSSAUG00010014672) #35	dolk (ENSSAUG00010014663) #36	phyhd1 (ENSSAUG00010014352) #37
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	6	ENSGT00940000153434.c.b	ENSGT00940000161347.a.b #8	ENSGT00940000154422.d #9	ENSGT00940000155770.b.b #11	ENSGT00940000170274	ENSGT00390000013415.b #12	ENSGT00940000155227.a #13	ENSGT00390000018729.a.f #14	ENSGT00940000156090.b #15	ENSGT01000000214630 #16	ENSGT00550000074846.jb.b #17	ENSGT00390000016167 #18	ENSGT00940000156997.b #19	ENSGT00390000018830.a.b #20	ENSGT01030000234535.C #21	ENSGT00390000005254 #22	ENSGT00390000010743.b.a #23	ENSGT00940000159569 #24	ENSGT00390000008732.b #25	ENSGT00390000011509 #26	ENSGT00940000159324 #27	ENSGT00940000157157.b.a.b #28	ENSGT00950000182975.a.a.b.l #29	ENSGT00940000156880.c.a #30	ENSGT00390000013040 #31	ENSGT00940000162230 #32	ENSGT00940000162727.a.b #33	ENSGT00950000183190.a.b.b #34	ENSGT00390000005742.x #35	ENSGT00390000004067 #36	ENSGT00390000006287 #37
European seabass	MODERN SPECIES	9	kcmf1 (ENSDLAG00005009910)	ntrk2b (ENSDLAG00005009848)	hnrpkl (ENSDLAG00005009780)	ENSDLAG00005009025 #11	ENSDLAG00005031069	gna14 (ENSDLAG00005009757) #8	ENSDLAG00005008973 #12	ENSDLAG00005007696 #14	ENSDLAG00005007831 #13	ENSDLAG00005007671 #16	atp5fa1 (ENSDLAG00005007330) #17	C18orf25 (ENSDLAG00005027206) #18	RNF165 (ENSDLAG00005007267) #19	LOXHD1 (ENSDLAG00005006888) #20	ST8SIA5 (ENSDLAG00005006845) #21	rpl37 (ENSDLAG00005006838) #22	ENSDLAG00005006673 #23	ENSDLAG00005006661 #24	ENSDLAG00005006652 #25	ENSDLAG00005030236 #26	ENSDLAG00005004755 #27	ENSDLAG00005001449 #28	ENSDLAG00005001124 #29	ENSDLAG00005000746 #30	ENSDLAG00005000700 #31	ENSDLAG00005000680	ENSDLAG00005000683	ENSDLAG00005030041	ENSDLAG00005000610	spout1 (ENSDLAG00005000535)	ENSDLAG00005000515
Large yellow croaker	MODERN SPECIES	4	kyat1 (ENSLCRG00005002729)	spout1 (ENSLCRG00005002200)	ST6GALNAC6 (ENSLCRG00005002196)	st6galnac4 (ENSLCRG00005002193)	miga2 (ENSLCRG00005002192)	dolpp1 (ENSLCRG00005002189)	NTNG2 (ENSLCRG00005002186)	ENSLCRG00005002183	rapgef1b (ENSLCRG00005000470)	uck1 (ENSLCRG00005000456)	dnlz (ENSLCRG00005000450)	zgc:77838 (ENSLCRG00005000446) #18	RNF165 (ENSLCRG00005000440) #19	LOXHD1 (ENSLCRG00005000408) #20	st8sia5 (ENSLCRG00005000384) #21	rpl37 (ENSLCRG00005000370) #22	PTGS1 (ENSLCRG00005000266) #23	pdcl (ENSLCRG00005019859) #24	ENSLCRG00005019858	ENSLCRG00005019857	rpl28 (ENSLCRG00005019856) #25	ENSLCRG00005019853 #26	ENSLCRG00005019752 #27	notch1a (ENSLCRG00005018363) #28	camsap1a (ENSLCRG00005017883) #29	KCNT1 (ENSLCRG00005017821) #30	psmd5 (ENSLCRG00005017758) #31	B3GALT9 (ENSLCRG00005017749) #32	ENSLCRG00005017715 #34	NUP188 (ENSLCRG00005016511) #35	dolk (ENSLCRG00005016504) #36
Ballan wrasse	DUPLICATION
Ballan wrasse	MODERN SPECIES	488					ENSLBEG00000028254	zgc:73226 (ENSLBEG00000028250) #12	thbs4b (ENSLBEG00000028228) #13	ENSLBEG00000028186 #14	zgc:122979 (ENSLBEG00000028149) #15	hwa (ENSLBEG00000028143) #16	atp5fa1 (ENSLBEG00000028138) #17	zgc:77838 (ENSLBEG00000028122) #18	RNF165 (ENSLBEG00000028102) #19	LOXHD1 (ENSLBEG00000028016) #20	st8sia5 (ENSLBEG00000027946) #21	rpl37 (ENSLBEG00000027894) #22	PTGS1 (ENSLBEG00000027881) #23	pdcl (ENSLBEG00000027867) #24	rpl28 (ENSLBEG00000027857) #25	ENSLBEG00000027847 #26	ENSLBEG00000027808 #27	notch1a (ENSLBEG00000027769) #28	ENSLBEG00000027747	ENSLBEG00000027743 #29	KCNT1 (ENSLBEG00000027725) #30
Ballan wrasse	MODERN SPECIES	2645																rpl37 (ENSLBEG00000005693) #22