Murinae	ANCESTRAL SPECIES	35	ENSGT00940000157678	ENSGT00940000157234	ENSGT00940000161024 #7	ENSGT00390000000917 #8	ENSGT00390000006347.b #9	ENSGT00940000155401.j #10	ENSGT00940000156564 #11	ENSGT00940000155360.B #13	ENSGT00510000049560 #14	ENSGT00940000162479 #16	ENSGT00640000092035	ENSGT00390000018090 #18	ENSGT00940000157872 #19	ENSGT00940000157849 #20	ENSGT00940000157874 #21	ENSGT00940000154474.A #22	ENSGT00940000157694 #23	ENSGT00940000154505.A #24	ENSGT00390000001101 #25	ENSGT00940000156905 #26	ENSGT00950000182899.B.a #27	ENSGT00940000154927 #28	ENSGT00530000063627.a #29	ENSGT00940000157453 #30	ENSGT00390000001394 #31	ENSGT00940000154652 #32	ENSGT01030000234579.B.b #33	ENSGT00940000159927 #34	ENSGT00940000160889 #35	ENSGT00940000161271 #36	ENSGT00390000016480 #37
Mus	ANCESTRAL SPECIES	6	ENSGT00940000157234	ENSGT00940000161024 #7	ENSGT00390000000917 #8	ENSGT00390000006347.b #9	ENSGT00940000155401.j #10	ENSGT00940000156564 #11	ENSGT00940000155360.B #13	ENSGT00510000049560 #14	ENSGT00860000135683 #15	ENSGT00940000162479 #16	ENSGT00900000143323.A #17	ENSGT00390000018090 #18	ENSGT00940000157872 #19	ENSGT00940000157849 #20	ENSGT00940000157874 #21	ENSGT00940000154474.A #22	ENSGT00940000157694 #23	ENSGT00940000154505.A #24	ENSGT00390000001101 #25	ENSGT00940000156905 #26	ENSGT00950000182899.B.a #27	ENSGT00940000154927 #28	ENSGT00530000063627.a #29	ENSGT00940000157453 #30	ENSGT00390000001394 #31	ENSGT00940000154652.i #32	ENSGT01030000234579.B.b #33	ENSGT00940000159927 #34	ENSGT00940000160889 #35	ENSGT00940000161271 #36	ENSGT00390000016480 #37
Mus_A	ANCESTRAL SPECIES	8	ENSGT00940000157234	ENSGT00940000161024 #7	ENSGT00390000000917 #8	ENSGT00390000006347.b #9	ENSGT00940000155401.j #10	ENSGT00940000156564 #11	ENSGT00940000155360.B #13	ENSGT00510000049560 #14	ENSGT00860000135683 #15	ENSGT00940000162479 #16	ENSGT00900000143323.A #17	ENSGT00390000018090 #18	ENSGT00940000157872 #19	ENSGT00940000157849 #20	ENSGT00940000157874 #21	ENSGT00940000154474.A #22	ENSGT00940000157694 #23	ENSGT00940000154505.A #24	ENSGT00390000001101 #25	ENSGT00940000156905 #26	ENSGT00950000182899.B.a #27	ENSGT00940000154927 #28	ENSGT00530000063627.a #29	ENSGT00940000157453 #30	ENSGT00390000001394 #31	ENSGT00940000154652.i #32	ENSGT01030000234579.B.b #33	ENSGT00940000159927 #34	ENSGT00940000160889 #35	ENSGT00940000161271 #36	ENSGT00390000016480 #37
Mus_B	ANCESTRAL SPECIES	6	ENSGT00940000157234	ENSGT00940000161024 #7	ENSGT00390000000917 #8	ENSGT00390000006347.b #9	ENSGT00940000155401.j #10	ENSGT00940000156564 #11	ENSGT00940000155360.B #13	ENSGT00510000049560 #14	ENSGT00860000135683 #15	ENSGT00940000162479 #16	ENSGT00900000143323.A #17	ENSGT00390000018090 #18	ENSGT00940000157872 #19	ENSGT00940000157849 #20	ENSGT00940000157874 #21	ENSGT00940000154474.A #22	ENSGT00940000157694 #23	ENSGT00940000154505.A #24	ENSGT00390000001101 #25	ENSGT00940000156905 #26	ENSGT00950000182899.B.a #27	ENSGT00940000154927 #28	ENSGT00530000063627.a #29	ENSGT00940000157453 #30	ENSGT00390000001394 #31	ENSGT00940000154652.i #32	ENSGT01030000234579.B.b #33	ENSGT00940000159927 #34	ENSGT00940000160889 #35	ENSGT00940000161271 #36	ENSGT00390000016480 #37
Mus_C	ANCESTRAL SPECIES	5	ENSGT00940000157234	ENSGT00940000161024 #7	ENSGT00390000000917 #8	ENSGT00390000006347.b #9	ENSGT00940000155401.j #10	ENSGT00940000156564 #11	ENSGT00940000155360.B #13	ENSGT00510000049560 #14	ENSGT00860000135683 #15	ENSGT00940000162479 #16	ENSGT00900000143323.A #17	ENSGT00390000018090 #18	ENSGT00940000157872 #19	ENSGT00940000157849 #20	ENSGT00940000157874 #21	ENSGT00940000154474.A #22	ENSGT00940000157694 #23	ENSGT00940000154505.A #24	ENSGT00390000001101 #25	ENSGT00940000156905 #26	ENSGT00950000182899.B.a #27	ENSGT00940000154927 #28	ENSGT00530000063627.a #29	ENSGT00940000157453 #30	ENSGT00390000001394 #31	ENSGT00940000154652.i #32	ENSGT01030000234579.B.b #33	ENSGT00940000159927 #34	ENSGT00940000160889 #35	ENSGT00940000161271 #36	ENSGT00390000016480 #37
spretus	MODERN SPECIES	17	Rab20 (MGP_SPRETEiJ_G0031924) #7	Naxd (MGP_SPRETEiJ_G0031925) #8	Cars2 (MGP_SPRETEiJ_G0031926) #9	Ing1 (MGP_SPRETEiJ_G0031927) #10	Ankrd10 (MGP_SPRETEiJ_G0031928) #11	Spaca7b (MGP_SPRETEiJ_G0031929) #12	Arhgef7 (MGP_SPRETEiJ_G0031930) #13	Tex29 (MGP_SPRETEiJ_G0031931) #14	MGP_SPRETEiJ_G0031932 #15	Sox1 (MGP_SPRETEiJ_G0031933) #16	MGP_SPRETEiJ_G0031934 #17	Spaca7 (MGP_SPRETEiJ_G0031935) #18	Tubgcp3 (MGP_SPRETEiJ_G0031936) #19	Atp11a (MGP_SPRETEiJ_G0031937) #20	Mcf2l (MGP_SPRETEiJ_G0031938) #21	F7 (MGP_SPRETEiJ_G0031939) #22	F10 (MGP_SPRETEiJ_G0031940) #23	Proz (MGP_SPRETEiJ_G0031941) #24	Pcid2 (MGP_SPRETEiJ_G0031942) #25	Cul4a (MGP_SPRETEiJ_G0031943) #26	Lamp1 (MGP_SPRETEiJ_G0031944) #27	Grtp1 (MGP_SPRETEiJ_G0031945) #28	Adprhl1 (MGP_SPRETEiJ_G0031946) #29	Dcun1d2 (MGP_SPRETEiJ_G0031947) #30	Tmco3 (MGP_SPRETEiJ_G0031948) #31	Tfdp1 (MGP_SPRETEiJ_G0031949) #32	Atp4b (MGP_SPRETEiJ_G0031950) #33	Grk1 (MGP_SPRETEiJ_G0031951) #34	Tmem255b (MGP_SPRETEiJ_G0031952) #35	Gas6 (MGP_SPRETEiJ_G0031953) #36	1700029H14Rik (MGP_SPRETEiJ_G0031954) #37
Steppe mouse	MODERN SPECIES	3344	Ankrd10 (ENSMSIG00000009467) #11	Spaca7b (ENSMSIG00000009444) #18	ENSMSIG00000009432 ##17	ENSMSIG00000009425	ENSMSIG00000009396	Arhgef7 (ENSMSIG00000009198) #13	Tex29 (ENSMSIG00000009088) #14	ENSMSIG00000009060 #15	ENSMSIG00000009016	ENSMSIG00000009009 #17	Spaca7 (ENSMSIG00000008969) #18	ENSMSIG00000007709 #19	ENSMSIG00000007686	Atp11a (ENSMSIG00000007316) #20	Mcf2l (ENSMSIG00000006777) #21	F7 (ENSMSIG00000006688) #22	F10 (ENSMSIG00000006622) #23	ENSMSIG00000006611 #24	Pcid2 (ENSMSIG00000006579) #25	Cul4a (ENSMSIG00000006476) #26	Lamp1 (ENSMSIG00000006411) #27	Grtp1 (ENSMSIG00000006285) #28	Adprhl1 (ENSMSIG00000006243) #29	ENSMSIG00000006071 #30	Tmco3 (ENSMSIG00000006023) #31	ENSMSIG00000005980 #32	Atp4b (ENSMSIG00000005950) #33	Grk1 (ENSMSIG00000005917) #34	Tmem255b (ENSMSIG00000005845) #35	Gas6 (ENSMSIG00000005788) #36	1700029H14Rik (ENSMSIG00000005649) #37
Mouse	MODERN SPECIES	17	Col4a1 (ENSMUSG00000031502)	Col4a2 (ENSMUSG00000031503)	Rab20 (ENSMUSG00000031504) #7	Naxd (ENSMUSG00000031505) #8	Cars2 (ENSMUSG00000056228) #9	Ing1 (ENSMUSG00000045969) #10	Ankrd10 (ENSMUSG00000031508) #11	Spaca7b (ENSMUSG00000031509) #18	Arhgef7 (ENSMUSG00000031511) #13	Tex29 (ENSMUSG00000031512) #14	Sox1 (ENSMUSG00000096014) #16	Spaca7 (ENSMUSG00000010435) #18	Tubgcp3 (ENSMUSG00000000759) #19	Atp11a (ENSMUSG00000031441) #20	Mcf2l (ENSMUSG00000031442) #21	F7 (ENSMUSG00000031443) #22	F10 (ENSMUSG00000031444) #23	Proz (ENSMUSG00000031445) #24	Pcid2 (ENSMUSG00000038542) #25	Cul4a (ENSMUSG00000031446) #26	Lamp1 (ENSMUSG00000031447) #27	Grtp1 (ENSMUSG00000038515) #28	Adprhl1 (ENSMUSG00000031448) #29	Dcun1d2 (ENSMUSG00000038506) #30	Tmco3 (ENSMUSG00000038497) #31	Tfdp1 (ENSMUSG00000038482) #32	Atp4b (ENSMUSG00000031449) #33	Grk1 (ENSMUSG00000031450) #34	Tmem255b (ENSMUSG00000038457) #35	Gas6 (ENSMUSG00000031451) #36	1700029H14Rik (ENSMUSG00000031452) #37
Ryukyu mouse	MODERN SPECIES	17	Col4a2 (MGP_CAROLIEiJ_G0030815)	Rab20 (MGP_CAROLIEiJ_G0030816) #7	Naxd (MGP_CAROLIEiJ_G0030817) #8	Cars2 (MGP_CAROLIEiJ_G0030818) #9	Ing1 (MGP_CAROLIEiJ_G0030819) #10	MGP_CAROLIEiJ_G0030820 #18	MGP_CAROLIEiJ_G0030821 #13	MGP_CAROLIEiJ_G0030822 #14	MGP_CAROLIEiJ_G0030823 #15	Sox1 (MGP_CAROLIEiJ_G0030824) #16	MGP_CAROLIEiJ_G0030825 #17	Spaca7 (MGP_CAROLIEiJ_G0030826) #18	MGP_CAROLIEiJ_G0030827	Atp11a (MGP_CAROLIEiJ_G0030828) #20	Mcf2l (MGP_CAROLIEiJ_G0030829) #21	F7 (MGP_CAROLIEiJ_G0030830) #22	MGP_CAROLIEiJ_G0030831 #23	Proz (MGP_CAROLIEiJ_G0030832) #24	Pcid2 (MGP_CAROLIEiJ_G0030833) #25	MGP_CAROLIEiJ_G0030834 #26	Lamp1 (MGP_CAROLIEiJ_G0030835) #27	Grtp1 (MGP_CAROLIEiJ_G0030836) #28	Adprhl1 (MGP_CAROLIEiJ_G0030837) #29	MGP_CAROLIEiJ_G0030838 #30	Tmco3 (MGP_CAROLIEiJ_G0030839) #31	Atp4b (MGP_CAROLIEiJ_G0030840) #33	MGP_CAROLIEiJ_G0030841 #34	Tmem255b (MGP_CAROLIEiJ_G0030842) #35	Gas6 (MGP_CAROLIEiJ_G0030843) #36	1700029H14Rik (MGP_CAROLIEiJ_G0030844) #37	Rasa3 (MGP_CAROLIEiJ_G0030845)
Shrew mouse	MODERN SPECIES	10	Rab20 (MGP_PahariEiJ_G0021277) #7	Naxd (MGP_PahariEiJ_G0021278) #8	Cars2 (MGP_PahariEiJ_G0021279) #9	Ing1 (MGP_PahariEiJ_G0021280) #10	Ankrd10 (MGP_PahariEiJ_G0021281) #11	Spaca7b (MGP_PahariEiJ_G0021282) #18	Arhgef7 (MGP_PahariEiJ_G0021283) #13	MGP_PahariEiJ_G0021284 #14	MGP_PahariEiJ_G0021285 #15	Sox1 (MGP_PahariEiJ_G0021286) #16	MGP_PahariEiJ_G0021287 #17	Spaca7 (MGP_PahariEiJ_G0021288) #18	Tubgcp3 (MGP_PahariEiJ_G0021289) #19	Atp11a (MGP_PahariEiJ_G0021290) #20	Mcf2l (MGP_PahariEiJ_G0021291) #21	F7 (MGP_PahariEiJ_G0021292) #22	F10 (MGP_PahariEiJ_G0021293) #23	Proz (MGP_PahariEiJ_G0021294) #24	Pcid2 (MGP_PahariEiJ_G0021295) #25	Cul4a (MGP_PahariEiJ_G0021296) #26	Lamp1 (MGP_PahariEiJ_G0021297) #27	Grtp1 (MGP_PahariEiJ_G0021298) #28	MGP_PahariEiJ_G0021299 #29	Dcun1d2 (MGP_PahariEiJ_G0021300) #30	Tmco3 (MGP_PahariEiJ_G0021301) #31	Tfdp1 (MGP_PahariEiJ_G0021302) #32	Atp4b (MGP_PahariEiJ_G0021303) #33	Grk1 (MGP_PahariEiJ_G0021304) #34	Tmem255b (MGP_PahariEiJ_G0021305) #35	Gas6 (MGP_PahariEiJ_G0021306) #36	1700029H14Rik (MGP_PahariEiJ_G0021307) #37
Rat	MODERN SPECIES	7	Col4a2 (ENSRNOG00000023972)	Rab20 (ENSRNOG00000023991) #7	Naxd (ENSRNOG00000015021) #8	Cars2 (ENSRNOG00000014526) #9	Ing1 (ENSRNOG00000014520) ##10	Ankrd10 (ENSRNOG00000064616) #11	AABR07026557.1 (ENSRNOG00000053136) #18	Arhgef7 (ENSRNOG00000012934) #13	Tex29 (ENSRNOG00000033585) #14	Sox1 (ENSRNOG00000064976) #16	LOC102553495 (ENSRNOG00000031681)	Spaca7 (ENSRNOG00000054006) #18	Tubgcp3 (ENSRNOG00000017085) #19	Atp11a (ENSRNOG00000017154) #20	Mcf2l (ENSRNOG00000028426) #21	F7 (ENSRNOG00000032737) #22	F10 (ENSRNOG00000033444) #23	Proz (ENSRNOG00000019700) #24	Pcid2 (ENSRNOG00000025222) #25	ENSRNOG00000064057	Cul4a (ENSRNOG00000019649) #26	Lamp1 (ENSRNOG00000019629) #27	Adprhl1 (ENSRNOG00000019504) #29	Dcun1d2 (ENSRNOG00000019473) #30	Tmco3 (ENSRNOG00000046973) #31	Tfdp1 (ENSRNOG00000019222) #32	Atp4b (ENSRNOG00000018543) #33	Grk1 (ENSRNOG00000018430) #34	Tmem255b (ENSRNOG00000026336) #35	Gas6 (ENSRNOG00000018233) #36	LOC290876 (ENSRNOG00000026740) #37