Hystricomorpha	ANCESTRAL SPECIES	25	ENSGT00940000158920.o #7	ENSGT00940000161407 #8	ENSGT00940000157678 #9	ENSGT00940000157234 #10	ENSGT00940000161024	ENSGT00390000000917 #12	ENSGT00390000006347.b #14	ENSGT00940000155401.h #13	ENSGT00940000156564 #15	ENSGT00940000168071 #16	ENSGT00940000155360.B #17	ENSGT00940000162479	ENSGT00940000157872 #19	ENSGT00940000157849 #20	ENSGT00940000157874 #21	ENSGT00940000154474.A #22	ENSGT00940000157694 #23	ENSGT00940000154505.A #24	ENSGT00390000001101.r #25	ENSGT00940000156905 #26	ENSGT00950000182899.B.a #27	ENSGT00940000154927 #28	ENSGT00530000063627.a #29	ENSGT00940000157453 #30	ENSGT00390000001394 #31	ENSGT00940000154652 #32	ENSGT01030000234579.B.b #33	ENSGT00940000159927 #34	ENSGT00940000160889 #35	ENSGT00940000161271 #36	ENSGT00390000016480 #37
Hystricomorpha_a	ANCESTRAL SPECIES	21	ENSGT00940000158920.o #7	ENSGT00940000161407 #8	ENSGT00940000157678 #9	ENSGT00940000157234 #10	ENSGT00940000161024	ENSGT00390000000917 #12	ENSGT00390000006347.b #14	ENSGT00940000155401.h #13	ENSGT00940000156564 #15	ENSGT00940000168071 #16	ENSGT00940000155360.B #17	ENSGT00510000049560 #18	ENSGT00940000157872 #19	ENSGT00940000157849 #20	ENSGT00940000157874 #21	ENSGT00940000154474.A #22	ENSGT00940000157694 #23	ENSGT00940000154505.A #24	ENSGT00390000001101.r #25	ENSGT00940000156905 #26	ENSGT00950000182899.B.a #27	ENSGT00940000154927 #28	ENSGT00530000063627.a #29	ENSGT00940000157453 #30	ENSGT00390000001394 #31	ENSGT00940000154652 #32	ENSGT01030000234579.B.b #33	ENSGT00940000159927 #34	ENSGT00940000160889 #35	ENSGT00940000161271 #36	ENSGT00390000016480 #37
Hystricomorpha_b	ANCESTRAL SPECIES	44	ENSGT00940000161407 #8	ENSGT00940000157678 #9	ENSGT00940000157234 #10	ENSGT00940000161024	ENSGT00390000004735.B.a.b #11	ENSGT00390000000917 #12	ENSGT00390000006347.b #14	ENSGT00940000155401.h #13	ENSGT00940000156564 #15	ENSGT00940000168071 #16	ENSGT00940000155360.B #17	ENSGT00510000049560 #18	ENSGT00940000157872 #19	ENSGT00940000157849 #20	ENSGT00940000157874 #21	ENSGT00940000154474.A #22	ENSGT00940000157694 #23	ENSGT00940000154505.A #24	ENSGT00390000001101.r #25	ENSGT00940000156905 #26	ENSGT00950000182899.B.a #27	ENSGT00940000154927 #28	ENSGT00530000063627.a #29	ENSGT00940000157453 #30	ENSGT00390000001394 #31	ENSGT00940000154652 #32	ENSGT01030000234579.B.b #33	ENSGT00940000159927 #34	ENSGT00940000160889 #35	ENSGT00940000161271 #36	ENSGT00390000016480 #37
Long-tailed chinchilla	MODERN SPECIES	111	MYO16 (ENSCLAG00000004226) #7	IRS2 (ENSCLAG00000003689) #8	COL4A1 (ENSCLAG00000003263) #9	COL4A2 (ENSCLAG00000002637) #10	ENSCLAG00000010867 #11	NAXD (ENSCLAG00000008979) #12	ING1 (ENSCLAG00000017685) #13	CARS2 (ENSCLAG00000010030) #14	ANKRD10 (ENSCLAG00000009950) #15	ENSCLAG00000015201 #16	ARHGEF7 (ENSCLAG00000002159) #17	ENSCLAG00000001914 #18	TUBGCP3 (ENSCLAG00000001848) #19	ATP11A (ENSCLAG00000006784) #20	MCF2L (ENSCLAG00000002098) #21	F7 (ENSCLAG00000004276) #22	F10 (ENSCLAG00000004028) #23	PROZ (ENSCLAG00000002909) #24	PCID2 (ENSCLAG00000002752) #25	CUL4A (ENSCLAG00000002629) #26	LAMP1 (ENSCLAG00000003876) #27	GRTP1 (ENSCLAG00000003539) #28	ENSCLAG00000002749 #29	DCUN1D2 (ENSCLAG00000003327) #30	TMCO3 (ENSCLAG00000003648) #31	TFDP1 (ENSCLAG00000003535) #32	ATP4B (ENSCLAG00000003301) #33	GRK1 (ENSCLAG00000003146) #34	TMEM255B (ENSCLAG00000002978) #35	GAS6 (ENSCLAG00000002827) #36	ENSCLAG00000002436 #37
Guinea pig	MODERN SPECIES	5	LIG4 (ENSCPOG00000014266)	ABHD13 (ENSCPOG00000026748)	TNFSF13B (ENSCPOG00000032575)	MYO16 (ENSCPOG00000002412) #7	COL4A1 (ENSCPOG00000026271) #9	COL4A2 (ENSCPOG00000010611) #10	RAB20 (ENSCPOG00000034193)	NAXD (ENSCPOG00000019974) #12	CARS2 (ENSCPOG00000024839) #14	ING1 (ENSCPOG00000035111) #13	ANKRD10 (ENSCPOG00000032064) #15	ARHGEF7 (ENSCPOG00000010585) #17	TUBGCP3 (ENSCPOG00000027201) #19	ATP11A (ENSCPOG00000010539) #20	MCF2L (ENSCPOG00000025369) #21	F7 (ENSCPOG00000005296) #22	F10 (ENSCPOG00000005297) #23	PROZ (ENSCPOG00000014204) #24	PCID2 (ENSCPOG00000014206) #25	CUL4A (ENSCPOG00000007488) #26	LAMP1 (ENSCPOG00000021441) #27	GRTP1 (ENSCPOG00000013842) #28	ENSCPOG00000014361 #29	DCUN1D2 (ENSCPOG00000014364) #30	TMCO3 (ENSCPOG00000006999) #31	TFDP1 (ENSCPOG00000013486) #32	ATP4B (ENSCPOG00000013488) #33	GRK1 (ENSCPOG00000013493) #34	TMEM255B (ENSCPOG00000001504) #35	GAS6 (ENSCPOG00000007335) #36	C13orf46 (ENSCPOG00000022842) #37
Naked mole-rat female	MODERN SPECIES	30	ENSHGLG00000038368	ENSHGLG00000037424	ENSHGLG00000032498	ENSHGLG00000045473	ENSHGLG00000039828	ENSHGLG00000001367	NSDHL (ENSHGLG00000034743)	CETN2 (ENSHGLG00000000679)	ENSHGLG00000034611	ENSHGLG00000041325	GABRQ (ENSHGLG00000000255)	ENSHGLG00000000811	ENSHGLG00000042494	ENSHGLG00000033171	ENSHGLG00000002103 #21	ENSHGLG00000046767 #22	F10 (ENSHGLG00000039136) #23	PROZ (ENSHGLG00000037291) #24	PCID2 (ENSHGLG00000003349) #25	CUL4A (ENSHGLG00000002538) #26	LAMP1 (ENSHGLG00000002376) #27	ENSHGLG00000002306 #28	ENSHGLG00000036527	DCUN1D2 (ENSHGLG00000004905) #30	TMCO3 (ENSHGLG00000003925) #31	TFDP1 (ENSHGLG00000003633) #32	ATP4B (ENSHGLG00000003223) #33	GRK1 (ENSHGLG00000002895) #34	TMEM255B (ENSHGLG00000002627) #35	GAS6 (ENSHGLG00000002481) #36	ENSHGLG00000038427