Rodentia_A	ANCESTRAL SPECIES	12	ENSGT00390000011772	ENSGT00940000159260 #8	ENSGT00510000047270 #9	ENSGT00940000161709 #11	ENSGT00950000183157.b #12	ENSGT00940000156878 #13	ENSGT00940000153772.A #14	ENSGT00390000008140 #15	ENSGT01030000234648.a.b.a.a.b #16	ENSGT00390000018285 #17	ENSGT01100000263518.B.b.b #18	ENSGT00390000010899.a.b.b.b	ENSGT01020000230364.a.a.b.a #19	ENSGT01020000230364.a.a.b.b #20	ENSGT01020000230364.a.b #21	ENSGT00730000110895.b.a #22	ENSGT00940000156567 #23	ENSGT00940000157073 #24	ENSGT00390000008099 #25	ENSGT00390000014326 #26	ENSGT01030000234550.a.a.d.a.a #27	ENSGT01100000263477.B.d.b #28	ENSGT00940000163382 #29	ENSGT00940000163928	ENSGT00590000083094.a.b #30	ENSGT00940000159477 #31	ENSGT00390000013249 #32	ENSGT00940000155529.C #33	ENSGT00950000183004.a.b.a.a #34	ENSGT00940000157480 #35	ENSGT00390000015216 #36
Sciuridae	ANCESTRAL SPECIES	7	ENSGT00390000011772	ENSGT00940000159260 #8	ENSGT00510000047270 #9	ENSGT00940000161709 #11	ENSGT00950000183157.b #12	ENSGT00940000156878 #13	ENSGT00940000153772.A #14	ENSGT00390000008140 #15	ENSGT01030000234648.a.b.a.a.b #16	ENSGT00390000018285 #17	ENSGT01100000263518.B.b.b #18	ENSGT00390000010899.a.b.b.b	ENSGT01020000230364.a.a.b.a #19	ENSGT01020000230364.a.a.b.b #20	ENSGT01020000230364.a.b #21	ENSGT00730000110895.b.a #22	ENSGT00940000156567 #23	ENSGT00940000157073 #24	ENSGT00390000008099 #25	ENSGT00390000014326 #26	ENSGT01030000234550.a.a.d.a.a #27	ENSGT01100000263477.B.d.b #28	ENSGT00940000163382 #29	ENSGT00590000083094.a.b #30	ENSGT00940000159477 #31	ENSGT00390000013249 #32	ENSGT00940000155529.C #33	ENSGT00950000183004.a.b.a.a #34	ENSGT00940000157480 #35	ENSGT00390000015216 #36	ENSGT00940000156619 #37
Marmotini	ANCESTRAL SPECIES	35	ENSGT00940000159260 #8	ENSGT00510000047270 #9	ENSGT00940000153314.a.a #10	ENSGT00940000161709 #11	ENSGT00950000183157.b #12	ENSGT00940000156878 #13	ENSGT00940000153772.A #14	ENSGT00390000008140 #15	ENSGT01030000234648.a.b.a.a.b #16	ENSGT00390000018285 #17	ENSGT01100000263518.B.b.b #18	ENSGT00390000010899.a.b.b.b	ENSGT01020000230364.a.a.b.a #19	ENSGT01020000230364.a.a.b.b #20	ENSGT01020000230364.a.b #21	ENSGT00730000110895.b.a #22	ENSGT00940000156567 #23	ENSGT00940000157073 #24	ENSGT00390000008099 #25	ENSGT00390000014326 #26	ENSGT01030000234550.a.a.d.a.a #27	ENSGT01100000263477.B.d.b #28	ENSGT00940000163382 #29	ENSGT00590000083094.a.b #30	ENSGT00940000159477 #31	ENSGT00390000013249 #32	ENSGT00940000155529.C #33	ENSGT00950000183004.a.b.a.a #34	ENSGT00940000157480 #35	ENSGT00390000015216 #36	ENSGT00940000156619 #37
Alpin marmot	MODERN SPECIES	22	ENSMMMG00000015714 #7	LRRC4 (ENSMMMG00000015704) #8	SND1 (ENSMMMG00000015627) #9	ENSMMMG00000015616 #10	PAX4 (ENSMMMG00000015595) #11	FSCN3 (ENSMMMG00000015585) #12	ARF5 (ENSMMMG00000015574) #13	GCC1 (ENSMMMG00000015571) #14	ZNF800 (ENSMMMG00000015549) #15	GRM8 (ENSMMMG00000015527) #16	POT1 (ENSMMMG00000015400) #17	GPR37 (ENSMMMG00000015396) #18	SPAM1 (ENSMMMG00000015253) #19	HYAL4 (ENSMMMG00000015235) #20	ENSMMMG00000015187 #21	WASL (ENSMMMG00000015176) #22	LMOD2 (ENSMMMG00000015170) #23	ASB15 (ENSMMMG00000015148) #24	NDUFA5 (ENSMMMG00000015124) #25	IQUB (ENSMMMG00000015110) #26	SLC13A1 (ENSMMMG00000015090) #27	TAS2R16 (ENSMMMG00000015086) #28	RNF148 (ENSMMMG00000015069) #29	CADPS2 (ENSMMMG00000015032) #30	FEZF1 (ENSMMMG00000015014) #31	AASS (ENSMMMG00000014988) #32	PTPRZ1 (ENSMMMG00000014884) #33	FAM3C (ENSMMMG00000014872) #34	WNT16 (ENSMMMG00000014850) #35	CPED1 (ENSMMMG00000014806) #36	ING3 (ENSMMMG00000014787) #37
Marmotini_b	ANCESTRAL SPECIES	175										ENSGT00390000018285 #17	ENSGT01100000263518.B.b.b #18	ENSGT00390000010899.a.b.b.b	ENSGT01020000230364.a.a.b.a #19	ENSGT01020000230364.a.a.b.b #20	ENSGT01020000230364.a.b #21	ENSGT00730000110895.b.a #22	ENSGT00940000156567 #23	ENSGT00940000157073 #24	ENSGT00390000008099 #25	ENSGT00390000014326 #26	ENSGT01030000234550.a.a.d.a.a #27	ENSGT01100000263477.B.d.b #28	ENSGT00590000083094.a.b #30	ENSGT00940000159477 #31	ENSGT00390000013249 #32	ENSGT00940000155529.C #33	ENSGT00950000183004.a.b.a.a #34	ENSGT00940000157480 #35	ENSGT00390000015216 #36	ENSGT00940000156619 #37	ENSGT00510000047764
Squirrel	MODERN SPECIES	205										POT1 (ENSSTOG00000025409) #17	GPR37 (ENSSTOG00000008778) #18	TMEM229A (ENSSTOG00000028439)	SPAM1 (ENSSTOG00000002602) #19	HYAL4 (ENSSTOG00000002598) #20	ENSSTOG00000026435 #21	WASL (ENSSTOG00000001892) #22	LMOD2 (ENSSTOG00000026603) #23	ASB15 (ENSSTOG00000001877) #24	NDUFA5 (ENSSTOG00000027404) #25	IQUB (ENSSTOG00000008080) #26	SLC13A1 (ENSSTOG00000012086) #27	CADPS2 (ENSSTOG00000008633) #30	FEZF1 (ENSSTOG00000022201) #31	AASS (ENSSTOG00000015486) #32	PTPRZ1 (ENSSTOG00000025909) #33	FAM3C (ENSSTOG00000006608) #34	WNT16 (ENSSTOG00000006593) #35	CPED1 (ENSSTOG00000006527) #36	ING3 (ENSSTOG00000004039) #37	TSPAN12 (ENSSTOG00000000209)	KCND2 (ENSSTOG00000030945)
Arctic ground squirrel	MODERN SPECIES	62										POT1 (ENSUPAG00010017535) #17	GPR37 (ENSUPAG00010017523) #18	TMEM229A (ENSUPAG00010017518)	SPAM1 (ENSUPAG00010017450) #19	HYAL4 (ENSUPAG00010017443) #20	ENSUPAG00010017312 #21	WASL (ENSUPAG00010017300) #22	LMOD2 (ENSUPAG00010017292) #23	ASB15 (ENSUPAG00010017255) #24	ENSUPAG00010017244 #25	IQUB (ENSUPAG00010017217) #26	SLC13A1 (ENSUPAG00010017198) #27	TAS2R16 (ENSUPAG00010017195) #28	CADPS2 (ENSUPAG00010016014) #30	FEZF1 (ENSUPAG00010015995) #31	AASS (ENSUPAG00010015951) #32	PTPRZ1 (ENSUPAG00010015800) #33	FAM3C (ENSUPAG00010015781) #34	WNT16 (ENSUPAG00010015755) #35	CPED1 (ENSUPAG00010015735) #36	ING3 (ENSUPAG00010015709) #37	TSPAN12 (ENSUPAG00010015684)
Eurasian red squirrel	MODERN SPECIES	17	ENSSVLG00005007031	PAX4 (ENSSVLG00005007068) #11	FSCN3 (ENSSVLG00005007223) #12	ARF5 (ENSSVLG00005007263) #13	GCC1 (ENSSVLG00005007286) #14	ZNF800 (ENSSVLG00005007309) #15	GRM8 (ENSSVLG00005007347) #16	TEAD2 (ENSSVLG00005007471)	POT1 (ENSSVLG00005007551) #17	GPR37 (ENSSVLG00005007725) #18	ENSSVLG00005007773	TMEM229A (ENSSVLG00005007852)	SPAM1 (ENSSVLG00005007942) #19	HYAL4 (ENSSVLG00005008218) #20	ENSSVLG00005008265 #21	WASL (ENSSVLG00005008370) #22	LMOD2 (ENSSVLG00005008381) #23	ASB15 (ENSSVLG00005008414) #24	ENSSVLG00005008480 #25	ENSSVLG00005008606 #26	SLC13A1 (ENSSVLG00005008725) #27	TAS2R16 (ENSSVLG00005008847) #28	CADPS2 (ENSSVLG00005008973) #30	FEZF1 (ENSSVLG00005009793) #31	AASS (ENSSVLG00005009890) #32	PTPRZ1 (ENSSVLG00005010362) #33	ENSSVLG00005013132	FAM3C (ENSSVLG00005013224) #34	WNT16 (ENSSVLG00005013269) #35	CPED1 (ENSSVLG00005013406) #36	ING3 (ENSSVLG00005013543) #37
Hystricomorpha	ANCESTRAL SPECIES	14	ENSGT00390000011772	ENSGT00940000159260 #8	ENSGT00510000047270 #9	ENSGT00940000161709 #11	ENSGT00950000183157.b #12	ENSGT00940000156878 #13	ENSGT00940000153772.A #14	ENSGT00390000008140 #15	ENSGT01030000234648.a.b.a.a.b #16	ENSGT00390000018285 #17	ENSGT01100000263518.B.b.b #18	ENSGT00390000010899.a.b.b.b	ENSGT01020000230364.a.a.b.a #19	ENSGT01020000230364.a.a.b.b #20	ENSGT01020000230364.a.b #21	ENSGT00730000110895.b.a #22	ENSGT00940000156567 #23	ENSGT00940000157073 #24	ENSGT00390000008099 #25	ENSGT00390000014326 #26	ENSGT01030000234550.a.a.d.a.a #27	ENSGT01100000263477.B.d.b #28	ENSGT00940000163382 #29	ENSGT00940000163928	ENSGT00590000083094.a.b #30	ENSGT00940000159477 #31	ENSGT00390000013249 #32	ENSGT00940000155529.C #33	ENSGT00950000183004.a.b.a.a #34	ENSGT00940000157480 #35	ENSGT00390000015216 #36
Naked mole-rat female	MODERN SPECIES	5	ENSHGLG00000041627	ENSHGLG00000016657	ENSHGLG00000010213	ENSHGLG00000005743	ENSHGLG00000006403	ENSHGLG00000007144	ENSHGLG00000002212	ENSHGLG00000049918	ENSHGLG00000042213	POT1 (ENSHGLG00000003954) #17	GPR37 (ENSHGLG00000032710) #18	ENSHGLG00000036156	TMEM229A (ENSHGLG00000039371)	SPAM1 (ENSHGLG00000006133) #19	ENSHGLG00000007516 #21	WASL (ENSHGLG00000008493) #22	LMOD2 (ENSHGLG00000003814) #23	ASB15 (ENSHGLG00000004129) #24	NDUFA5 (ENSHGLG00000042692) #25	IQUB (ENSHGLG00000007200) #26	SLC13A1 (ENSHGLG00000019390) #27	ENSHGLG00000048989	TAS2R16 (ENSHGLG00000044095) #28	RNF148 (ENSHGLG00000033439) #29	CADPS2 (ENSHGLG00000017751) #30	FEZF1 (ENSHGLG00000006102) #31	AASS (ENSHGLG00000006193) #32	PTPRZ1 (ENSHGLG00000007675) #33	ENSHGLG00000019063 #34	WNT16 (ENSHGLG00000040512) #35	CPED1 (ENSHGLG00000007984) #36
Hystricomorpha_a	ANCESTRAL SPECIES	43	ENSGT00390000011772	ENSGT00940000159260 #8	ENSGT00510000047270 #9	ENSGT00940000161709 #11	ENSGT00950000183157.b #12	ENSGT00940000156878 #13	ENSGT00940000153772.A #14	ENSGT00390000008140 #15	ENSGT01030000234648.a.b.a.a.b #16	ENSGT00390000018285 #17	ENSGT01100000263518.B.b.b #18	ENSGT00390000010899.a.b.b.b	ENSGT01020000230364.a.a.b.a #19	ENSGT01020000230364.a.a.b.b #20	ENSGT01020000230364.a.b #21	ENSGT00730000110895.b.a #22	ENSGT00940000156567 #23	ENSGT00940000157073 #24	ENSGT00390000008099 #25	ENSGT00390000014326 #26	ENSGT01030000234550.a.a.d.a.a #27	ENSGT01100000263477.B.d.b #28	ENSGT00940000163928	ENSGT00590000083094.a.b #30	ENSGT00940000159477 #31	ENSGT00390000013249 #32	ENSGT00940000155529.C #33	ENSGT00950000183004.a.b.a.a #34	ENSGT00940000157480 #35	ENSGT00390000015216 #36	ENSGT00940000156619.l #37
Guinea pig	MODERN SPECIES	11	LRRC4 (ENSCPOG00000032605) #8	SND1 (ENSCPOG00000006251) #9	PAX4 (ENSCPOG00000006244) #11	FSCN3 (ENSCPOG00000005661) #12	ARF5 (ENSCPOG00000006239) #13	GCC1 (ENSCPOG00000038340) #14	ZNF800 (ENSCPOG00000007495) #15	ENSCPOG00000024031 #16	ENSCPOG00000036366 ##16	POT1 (ENSCPOG00000014166) #17	GPR37 (ENSCPOG00000014159) #18	TMEM229A (ENSCPOG00000039455)	SPAM1 (ENSCPOG00000001716) #19	HYAL4 (ENSCPOG00000013594) #20	ENSCPOG00000027329 #21	WASL (ENSCPOG00000003284) #22	LMOD2 (ENSCPOG00000034650) #23	ASB15 (ENSCPOG00000025748) #24	NDUFA5 (ENSCPOG00000030629) #25	IQUB (ENSCPOG00000006286) #26	SLC13A1 (ENSCPOG00000006440) #27	TAS2R16 (ENSCPOG00000007419) #28	RNF133 (ENSCPOG00000035136)	CADPS2 (ENSCPOG00000005875) #30	FEZF1 (ENSCPOG00000013096) #31	AASS (ENSCPOG00000007522) #32	PTPRZ1 (ENSCPOG00000039416) #33	FAM3C (ENSCPOG00000005639) #34	WNT16 (ENSCPOG00000005635) #35	CPED1 (ENSCPOG00000007693) #36	ING3 (ENSCPOG00000023225) #37
Hystricomorpha_b	ANCESTRAL SPECIES	85	ENSGT00390000011772	ENSGT00940000159260 #8	ENSGT00510000047270 #9	ENSGT00940000161709 #11	ENSGT00950000183157.b #12	ENSGT00940000156878 #13	ENSGT00940000153772.A #14	ENSGT00390000008140 #15	ENSGT01030000234648.a.b.a.a.b #16	ENSGT00390000018285 #17	ENSGT01100000263518.B.b.b #18	ENSGT00390000010899.a.b.b.b	ENSGT01020000230364.a.a.b.a #19	ENSGT01020000230364.a.a.b.b #20	ENSGT01020000230364.a.b #21	ENSGT00730000110895.b.a #22	ENSGT00940000156567 #23	ENSGT00940000157073 #24	ENSGT00390000008099 #25	ENSGT00390000014326 #26	ENSGT01030000234550.a.a.d.a.a #27	ENSGT00940000163928	ENSGT00590000083094.a.b #30	ENSGT00940000159477 #31	ENSGT00390000013249 #32	ENSGT00940000155529.C #33	ENSGT00950000183004.a.b.a.a #34	ENSGT00940000157480 #35	ENSGT00390000015216 #36	ENSGT00940000156619.l #37	ENSGT00510000047764
Long-tailed chinchilla	MODERN SPECIES	186	RBM28 (ENSCLAG00000003707)	LEP (ENSCLAG00000003590)	LRRC4 (ENSCLAG00000003547) #8	SND1 (ENSCLAG00000011796) #9	PAX4 (ENSCLAG00000008291) #11	FSCN3 (ENSCLAG00000008067) #12	ARF5 (ENSCLAG00000007930) #13	GCC1 (ENSCLAG00000007735) #14	ZNF800 (ENSCLAG00000007288) #15	GRM8 (ENSCLAG00000004841) #16	POT1 (ENSCLAG00000004448) #17	GPR37 (ENSCLAG00000004210) #18	SPAM1 (ENSCLAG00000004068) #19	HYAL4 (ENSCLAG00000004024) #20	ENSCLAG00000003732 #21	WASL (ENSCLAG00000003691) #22	LMOD2 (ENSCLAG00000003580) #23	ASB15 (ENSCLAG00000007102) #24	NDUFA5 (ENSCLAG00000006860) #25	IQUB (ENSCLAG00000006424) #26	SLC13A1 (ENSCLAG00000011173) #27	RNF133 (ENSCLAG00000016991)	CADPS2 (ENSCLAG00000008518) #30	FEZF1 (ENSCLAG00000007477) #31	AASS (ENSCLAG00000008604) #32	PTPRZ1 (ENSCLAG00000007614) #33	FAM3C (ENSCLAG00000006898) #34	WNT16 (ENSCLAG00000006294) #35	CPED1 (ENSCLAG00000005090) #36	ING3 (ENSCLAG00000004878) #37	TSPAN12 (ENSCLAG00000004712)
Degu	MODERN SPECIES	211													TMEM229A (ENSODEG00000012354)	SPAM1 (ENSODEG00000011471) #19	HYAL4 (ENSODEG00000013266) #20	WASL (ENSODEG00000012985) #22	LMOD2 (ENSODEG00000011500) #23	ASB15 (ENSODEG00000012356) #24	ENSODEG00000011877 #25	IQUB (ENSODEG00000012185) #26	SLC13A1 (ENSODEG00000012195) #27	ENSODEG00000011569	RNF133 (ENSODEG00000011427)	CADPS2 (ENSODEG00000011793) #30	FEZF1 (ENSODEG00000011539) #31	AASS (ENSODEG00000011908) #32	PTPRZ1 (ENSODEG00000015174) #33	ENSODEG00000011725	ENSODEG00000013194	FAM3C (ENSODEG00000010369) #34	WNT16 (ENSODEG00000010930) #35