Euteleostomi	ANCESTRAL SPECIES	172														ENSGT00940000160876	ENSGT00940000161671	ENSGT00530000063829.C #22	ENSGT00730000111114 #23	ENSGT00940000156917 #24	ENSGT00390000018123.b	ENSGT00390000004786	ENSGT00950000182893.a.a.b	ENSGT00940000158901	ENSGT00940000155006	ENSGT00390000013867	ENSGT00390000013764 #26	ENSGT00940000160318	ENSGT00390000018330 #28	ENSGT00940000159233 #29	ENSGT00950000182872.f.a.a.b	ENSGT00940000160331	ENSGT00940000156477
Sarcopterygii	ANCESTRAL SPECIES	106												ENSGT00940000157014 #18	ENSGT00390000011067.A #19	ENSGT00940000158853 #20	ENSGT00390000014941 #21	ENSGT00530000063829.C #22	ENSGT00730000111114 #23	ENSGT00940000156917 #24	ENSGT00390000004786	ENSGT00950000182893.a.a.b	ENSGT00940000158901	ENSGT00940000155006	ENSGT00390000013764 #26	ENSGT00940000160318	ENSGT00940000163461.b	ENSGT00940000160950 #27	ENSGT00390000018330 #28	ENSGT00940000159233 #29	ENSGT00950000182872.f.a.a.b	ENSGT00940000160331	ENSGT00940000156477
Tetrapoda	ANCESTRAL SPECIES	56	ENSGT00950000183176.a	ENSGT01070000255540	ENSGT00950000183131.a	ENSGT00940000159472	ENSGT00390000001562	ENSGT00390000000546	ENSGT00940000154663	ENSGT00940000157601	ENSGT00390000001804	ENSGT00940000154258.a #15	ENSGT00950000182981.a #16	ENSGT00940000157014 #18	ENSGT00390000011067.A #19	ENSGT00940000158853 #20	ENSGT00390000014941 #21	ENSGT00530000063829.C #22	ENSGT00730000111114 #23	ENSGT00940000156917 #24	ENSGT00390000004786	ENSGT00950000182893.a.a.b	ENSGT00940000158901	ENSGT00940000155006	ENSGT00940000160486	ENSGT00940000156142	ENSGT00940000158405	ENSGT00940000154090.b	ENSGT00720000108866	ENSGT00940000162174	ENSGT00490000043380	ENSGT00940000155326	ENSGT00940000156091.b
Amniota	ANCESTRAL SPECIES	19	ENSGT00950000183176.a	ENSGT00940000162922	ENSGT00950000183131.a	ENSGT00940000159472	ENSGT00390000001562	ENSGT00390000000546	ENSGT00940000154663	ENSGT00940000157601	ENSGT00390000001804	ENSGT00940000154258.a #15	ENSGT00950000182981.a #16	ENSGT00940000157014 #18	ENSGT00390000011067.A #19	ENSGT00940000158853 #20	ENSGT00390000014941 #21	ENSGT00530000063829.C #22	ENSGT00730000111114 #23	ENSGT00940000156917 #24	ENSGT00390000004786	ENSGT00940000155458	ENSGT00940000159849	ENSGT00940000155308	ENSGT00390000007796	ENSGT00940000158442	ENSGT00940000155448	ENSGT00940000159708	ENSGT00940000153776.a.b	ENSGT00390000011581	ENSGT00940000156091.b	ENSGT00940000155326	ENSGT00490000043380
Mammalia	ANCESTRAL SPECIES	77	ENSGT00950000183176.a	ENSGT00940000162922	ENSGT00950000183131.a	ENSGT00940000159472	ENSGT00390000001562	ENSGT00390000000546	ENSGT00940000154663	ENSGT00940000157601	ENSGT00390000001804	ENSGT00940000154258.a #15	ENSGT00950000182981.a #16	ENSGT00940000157014 #18	ENSGT00390000011067.A #19	ENSGT00940000158853 #20	ENSGT00390000014941 #21	ENSGT00530000063829.C #22	ENSGT00730000111114 #23	ENSGT00940000156917 #24	ENSGT00940000156358 #25	ENSGT00390000013764 #26	ENSGT00940000160950 #27	ENSGT00390000018330 #28	ENSGT00940000159233 #29
Theria	ANCESTRAL SPECIES	19	ENSGT00950000183176.a	ENSGT00940000162922	ENSGT00950000183131.a	ENSGT00940000159472	ENSGT00390000001562	ENSGT00390000000546	ENSGT00940000154663	ENSGT00940000157601	ENSGT00390000001804	ENSGT00940000154258.a #15	ENSGT00950000182981.a #16	ENSGT00940000157014 #18	ENSGT00390000011067.A #19	ENSGT00940000158853 #20	ENSGT00390000014941 #21	ENSGT00530000063829.C #22	ENSGT00730000111114 #23	ENSGT00940000156917 #24	ENSGT00940000156358 #25	ENSGT00390000013764 #26	ENSGT00940000160950 #27	ENSGT00390000018330 #28	ENSGT00940000159233 #29	ENSGT00390000001159 #30	ENSGT00940000158315 #31	ENSGT00390000015972 #32	ENSGT00940000160254 #33	ENSGT00390000018118 #34	ENSGT00400000024545 #35	ENSGT00940000160455 #36	ENSGT00940000161056
Eutheria	ANCESTRAL SPECIES	11	ENSGT00950000183131.a	ENSGT00390000013020	ENSGT00940000162922	ENSGT00940000159472	ENSGT00390000001562	ENSGT00390000000546	ENSGT00940000154663	ENSGT00940000157601	ENSGT00390000001804	ENSGT00940000154258.a #15	ENSGT00950000182981.a #16	ENSGT00940000157014 #18	ENSGT00390000011067.A #19	ENSGT00940000158853 #20	ENSGT00390000014941 #21	ENSGT00530000063829.C #22	ENSGT00730000111114 #23	ENSGT00940000156917 #24	ENSGT00940000156358 #25	ENSGT00390000013764 #26	ENSGT00940000160950 #27	ENSGT00390000018330 #28	ENSGT00940000159233 #29	ENSGT00390000001159 #30	ENSGT00940000158315 #31	ENSGT00390000015972 #32	ENSGT00940000160254 #33	ENSGT00390000018118 #34	ENSGT00400000024545 #35	ENSGT00940000160455 #36	ENSGT00940000161056
Boreoeutheria	ANCESTRAL SPECIES	17	ENSGT00950000183131.a	ENSGT00390000013020	ENSGT00940000162922	ENSGT00940000159472	ENSGT00390000001562	ENSGT00390000000546	ENSGT00940000154663	ENSGT00940000157601	ENSGT00390000001804	ENSGT00940000154258.a #15	ENSGT00950000182981.a #16	ENSGT00940000157014 #18	ENSGT00390000011067.A #19	ENSGT00940000158853 #20	ENSGT00390000014941 #21	ENSGT00530000063829.C #22	ENSGT00730000111114 #23	ENSGT00940000156917 #24	ENSGT00940000156358 #25	ENSGT00390000013764 #26	ENSGT00940000160950 #27	ENSGT00390000018330 #28	ENSGT00940000159233 #29	ENSGT00390000001159 #30	ENSGT00940000158315 #31	ENSGT01100000263751	ENSGT00390000015972 #32	ENSGT00940000160254 #33	ENSGT00390000018118 #34	ENSGT00940000160455 #36	ENSGT00400000024545 #35
Euarchontoglires	ANCESTRAL SPECIES	17	ENSGT00950000183131.a	ENSGT00390000013020	ENSGT00940000162922	ENSGT00940000159472	ENSGT00390000001562	ENSGT00390000000546	ENSGT00940000154663	ENSGT00940000157601	ENSGT00390000001804	ENSGT00940000154258.a #15	ENSGT00950000182981.a #16	ENSGT00940000157014 #18	ENSGT00390000011067.A #19	ENSGT00940000158853 #20	ENSGT00390000014941 #21	ENSGT00530000063829.C #22	ENSGT00730000111114 #23	ENSGT00940000156917 #24	ENSGT00940000156358 #25	ENSGT00390000013764 #26	ENSGT00940000160950 #27	ENSGT00390000018330 #28	ENSGT00940000159233 #29	ENSGT00390000001159 #30	ENSGT00940000158315 #31	ENSGT01100000263751	ENSGT00390000015972 #32	ENSGT00940000160254 #33	ENSGT00390000018118 #34	ENSGT00940000160455 #36	ENSGT00400000024545 #35
Primates	ANCESTRAL SPECIES	17	ENSGT00950000183131.a	ENSGT00390000013020	ENSGT00940000162922	ENSGT00940000159472	ENSGT00390000001562	ENSGT00390000000546	ENSGT00940000154663	ENSGT00940000157601	ENSGT00390000001804	ENSGT00940000154258.a #15	ENSGT00950000182981.a #16	ENSGT00940000157014 #18	ENSGT00390000011067.A #19	ENSGT00940000158853 #20	ENSGT00390000014941 #21	ENSGT00530000063829.C #22	ENSGT00730000111114 #23	ENSGT00940000156917 #24	ENSGT00940000156358 #25	ENSGT00390000013764 #26	ENSGT00940000160950 #27	ENSGT00390000018330 #28	ENSGT00940000159233 #29	ENSGT00390000001159 #30	ENSGT00940000158315 #31	ENSGT01100000263751	ENSGT00390000015972 #32	ENSGT00940000160254 #33	ENSGT00390000018118 #34	ENSGT00940000160455 #36	ENSGT00400000024545 #35
Haplorrhini	ANCESTRAL SPECIES	13	ENSGT00950000183131.a	ENSGT00390000013020	ENSGT00940000162922	ENSGT00940000159472	ENSGT00390000001562	ENSGT00390000000546	ENSGT00940000154663	ENSGT00940000157601	ENSGT00390000001804	ENSGT00940000154258.a #15	ENSGT00950000182981.a #16	ENSGT00940000157014 #18	ENSGT00390000011067.A #19	ENSGT00940000158853 #20	ENSGT00390000014941 #21	ENSGT00530000063829.C #22	ENSGT00730000111114 #23	ENSGT00940000156917 #24	ENSGT00940000156358 #25	ENSGT00390000013764 #26	ENSGT00940000160950 #27	ENSGT00390000018330 #28	ENSGT00940000159233 #29	ENSGT00390000001159 #30	ENSGT00940000158315 #31	ENSGT01100000263751	ENSGT00390000015972 #32	ENSGT00940000160254 #33	ENSGT00390000018118 #34	ENSGT00940000160455 #36	ENSGT00400000024545 #35
Simiiformes	ANCESTRAL SPECIES	18	ENSGT00950000183131.a	ENSGT00390000013020	ENSGT00940000162922	ENSGT00940000159472	ENSGT00390000001562	ENSGT00390000000546	ENSGT00940000154663	ENSGT00940000157601	ENSGT00390000001804.cb.b	ENSGT00940000154258.a #15	ENSGT00950000182981.a #16	ENSGT00940000157014 #18	ENSGT00390000011067.A #19	ENSGT00940000158853 #20	ENSGT00390000014941 #21	ENSGT00530000063829.C #22	ENSGT00730000111114 #23	ENSGT00940000156917 #24	ENSGT00940000156358 #25	ENSGT00390000013764 #26	ENSGT00940000160950 #27	ENSGT00390000018330 #28	ENSGT00940000159233 #29	ENSGT00390000001159 #30	ENSGT00940000158315 #31	ENSGT01100000263751	ENSGT00390000015972 #32	ENSGT00940000160254 #33	ENSGT00390000018118 #34	ENSGT00940000160455 #36	ENSGT00400000024545 #35
Catarrhini	ANCESTRAL SPECIES	19	ENSGT00940000162922	ENSGT00940000159472	ENSGT00390000001562	ENSGT00390000000546	ENSGT00940000154663.u	ENSGT00390000013771.v	ENSGT00940000157601	ENSGT00390000001804.cb.b	ENSGT00940000154258.a #15	ENSGT00950000182981.a #16	ENSGT00940000153675.a.a.b.e.a.g.b #17	ENSGT00940000157014 #18	ENSGT00390000011067.A #19	ENSGT00940000158853 #20	ENSGT00390000014941 #21	ENSGT00530000063829.C #22	ENSGT00730000111114 #23	ENSGT00940000153299.c.b.a.b.a.b	ENSGT00940000156917 #24	ENSGT00940000156358 #25	ENSGT00390000013764 #26	ENSGT00940000160950 #27	ENSGT00390000018330 #28	ENSGT00940000159233 #29	ENSGT00390000001159 #30	ENSGT00940000158315 #31	ENSGT01100000263751	ENSGT00390000015972 #32	ENSGT00940000160254 #33	ENSGT00390000018118 #34	ENSGT00940000160455 #36
Cercopithecidae	ANCESTRAL SPECIES	16	ENSGT00940000162922	ENSGT00940000159472	ENSGT00390000001562	ENSGT00390000000546	ENSGT00940000154663.u	ENSGT00390000013771.v	ENSGT00940000157601	ENSGT00390000001804.cb.b.a.b	ENSGT00940000154258.a #15	ENSGT00950000182981.a #16	ENSGT00940000153675.a.a.b.e.a.g.b #17	ENSGT00940000157014 #18	ENSGT00390000011067.A #19	ENSGT00940000158853 #20	ENSGT00390000014941 #21	ENSGT00530000063829.C #22	ENSGT00730000111114 #23	ENSGT00940000153299.c.b.a.b.a.b	ENSGT00940000156917 #24	ENSGT00940000156358 #25	ENSGT00390000013764 #26	ENSGT00940000160950 #27	ENSGT00390000018330 #28	ENSGT00940000159233 #29	ENSGT00390000001159 #30	ENSGT00940000158315 #31	ENSGT00390000015972 #32	ENSGT00940000160254 #33	ENSGT00390000018118 #34	ENSGT00940000160455 #36	ENSGT00400000024545 #35
Cercopithecinae	ANCESTRAL SPECIES	19	ENSGT00940000162922	ENSGT00940000159472	ENSGT00390000001562	ENSGT00390000000546	ENSGT00940000154663.u	ENSGT00390000013771.v	ENSGT00940000157601	ENSGT00390000001804.cb.b.a.b	ENSGT00940000154258.a #15	ENSGT00950000182981.a #16	ENSGT00940000153675.a.a.b.e.a.g.b #17	ENSGT00940000157014 #18	ENSGT00390000011067.A #19	ENSGT00940000158853 #20	ENSGT00390000014941 #21	ENSGT00530000063829.C #22	ENSGT00730000111114 #23	ENSGT00940000153299.c.b.a.b.a.b	ENSGT00940000156917 #24	ENSGT00940000156358 #25	ENSGT00390000013764 #26	ENSGT00940000160950 #27	ENSGT00390000018330 #28	ENSGT00940000159233 #29	ENSGT00390000001159 #30	ENSGT00940000158315 #31	ENSGT00390000015972 #32	ENSGT00940000160254 #33	ENSGT00390000018118 #34	ENSGT00940000160455 #36	ENSGT00400000024545 #35
Cercopithecinae_a	ANCESTRAL SPECIES	18	ENSGT00940000154663.u	ENSGT00390000013771.v	ENSGT00940000157601	ENSGT00390000001804.cb.b.a.a	ENSGT00910000147823	ENSGT00390000001804.cb.b.a.b	ENSGT00940000153095.g.b.a.b.o	ENSGT00390000007890.c.a	ENSGT00940000154258.a #15	ENSGT00950000182981.a #16	ENSGT00940000153675.a.a.b.e.a.g.b #17	ENSGT00940000157014 #18	ENSGT00390000011067.A #19	ENSGT00940000158853 #20	ENSGT00390000014941 #21	ENSGT00530000063829.C #22	ENSGT00730000111114 #23	ENSGT00940000153299.c.b.a.b.a.b	ENSGT00940000156917 #24	ENSGT00940000156358 #25	ENSGT00390000013764 #26	ENSGT00940000160950 #27	ENSGT00390000018330 #28	ENSGT00940000159233 #29	ENSGT00390000001159 #30	ENSGT00940000158315 #31	ENSGT00390000015972 #32	ENSGT00940000160254 #33	ENSGT00390000018118 #34	ENSGT00940000160455 #36	ENSGT00400000024545 #35
Cercopithecinae_b	ANCESTRAL SPECIES	12	ENSGT00390000000546	ENSGT00940000154663.u	ENSGT00390000013771.v	ENSGT00940000157601	ENSGT00910000147823	ENSGT00390000001804.cb.b.a.b	ENSGT00940000153095.g.b.a.b.o	ENSGT00390000007890.c.a	ENSGT00940000154258.a #15	ENSGT00950000182981.a #16	ENSGT00940000153675.a.a.b.e.a.g.b #17	ENSGT00940000157014 #18	ENSGT00390000011067.A #19	ENSGT00940000158853 #20	ENSGT00390000014941 #21	ENSGT00530000063829.C #22	ENSGT00730000111114 #23	ENSGT00940000153299.c.b.a.b.a.b	ENSGT00940000156917 #24	ENSGT00940000156358 #25	ENSGT00390000013764 #26	ENSGT00940000160950 #27	ENSGT00390000018330 #28	ENSGT00940000159233 #29	ENSGT00390000001159 #30	ENSGT00940000158315 #31	ENSGT00390000015972 #32	ENSGT00940000160254 #33	ENSGT00390000018118 #34	ENSGT00940000160455 #36	ENSGT00400000024545 #35
Cercopithecinae_d	ANCESTRAL SPECIES	2	ENSGT00390000000546	ENSGT00940000154663.u	ENSGT00390000013771.v	ENSGT00940000157601	ENSGT00910000147823	ENSGT00390000001804.cb.b.a.b	ENSGT00940000153095.g.b.a.b.o	ENSGT00390000007890.c.a	ENSGT00940000154258.a #15	ENSGT00950000182981.a #16	ENSGT00940000153675.a.a.b.e.a.g.b #17	ENSGT00940000157014 #18	ENSGT00390000011067.A #19	ENSGT00940000158853 #20	ENSGT00390000014941 #21	ENSGT00530000063829.C #22	ENSGT00730000111114 #23	ENSGT00940000153299.c.b.a.b.a.b	ENSGT00940000156917 #24	ENSGT00940000156358 #25	ENSGT00390000013764 #26	ENSGT00940000160950 #27	ENSGT00390000018330 #28	ENSGT00940000159233 #29	ENSGT00390000001159 #30	ENSGT00940000158315 #31	ENSGT00390000015972 #32	ENSGT00940000160254 #33	ENSGT00390000018118 #34	ENSGT00940000160455 #36	ENSGT00400000024545 #35
Drill	MODERN SPECIES	330									ASIP (ENSMLEG00000010654) #15	AHCY (ENSMLEG00000034176) #16	ENSMLEG00000033356 #17	ITCH (ENSMLEG00000035500) #18	DYNLRB1 (ENSMLEG00000043629) #19	MAP1LC3A (ENSMLEG00000040666) #20	PIGU (ENSMLEG00000023509) #21	TP53INP2 (ENSMLEG00000043573) #22	NCOA6 (ENSMLEG00000023955) #23	GGT7 (ENSMLEG00000007101) #24	ACSS2 (ENSMLEG00000031945) #25	GSS (ENSMLEG00000031474) #26	MYH7B (ENSMLEG00000042979) #27	TRPC4AP (ENSMLEG00000025295) #28	EDEM2 (ENSMLEG00000028748) #29	PROCR (ENSMLEG00000037869) #30	MMP24 (ENSMLEG00000036357) #31	EIF6 (ENSMLEG00000043400) #32	FAM83C (ENSMLEG00000004620) #33	UQCC1 (ENSMLEG00000038496) #34	ENSMLEG00000027463 #35	GDF5 (ENSMLEG00000036106) #36	ENSMLEG00000042226 #37
Sooty mangabey	MODERN SPECIES	602	ZNF341 (ENSCATG00000011236)	CHMP4B (ENSCATG00000044221)	ENSCATG00000032333	RALY (ENSCATG00000031769)	ENSCATG00000022568	ENSCATG00000044082	ENSCATG00000044570	ENSCATG00000039901	ASIP (ENSCATG00000031477) #15	AHCY (ENSCATG00000044279) #16	ITCH (ENSCATG00000014525) #18	ENSCATG00000043993 #17	ENSCATG00000044108	MAP1LC3A (ENSCATG00000009117) #20	PIGU (ENSCATG00000037763) #21	TP53INP2 (ENSCATG00000016786) #22	NCOA6 (ENSCATG00000044657) #23	ENSCATG00000045113	GGT7 (ENSCATG00000019591) #24	ACSS2 (ENSCATG00000038772) #25	GSS (ENSCATG00000039520) #26	MYH7B (ENSCATG00000032483) #27	TRPC4AP (ENSCATG00000031979) #28	EDEM2 (ENSCATG00000031560) #29	PROCR (ENSCATG00000005902) #30	MMP24 (ENSCATG00000030505) #31	EIF6 (ENSCATG00000032440) #32	FAM83C (ENSCATG00000045115) #33	UQCC1 (ENSCATG00000030969) #34	GDF5 (ENSCATG00000040210) #36	ENSCATG00000022592 #35
Olive baboon	MODERN SPECIES	7	NECAB3 (ENSPANG00000025546)	C20orf144 (ENSPANG00000017513)	ACTL10 (ENSPANG00000004544)	E2F1 (ENSPANG00000006985)	PXMP4 (ENSPANG00000016747)	ZNF341 (ENSPANG00000018096)	CHMP4B (ENSPANG00000018095)	ENSPANG00000018093	ENSPANG00000048492	ASIP (ENSPANG00000022711) #15	AHCY (ENSPANG00000026274) #16	ITCH (ENSPANG00000009940) #18	DYNLRB1 (ENSPANG00000009941) #19	MAP1LC3A (ENSPANG00000014240) #20	NCOA6 (ENSPANG00000017422) #23	TP53INP2 (ENSPANG00000023199) #22	GGT7 (ENSPANG00000023260) #24	ACSS2 (ENSPANG00000023259) #25	GSS (ENSPANG00000023257) #26	MYH7B (ENSPANG00000000617) #27	TRPC4AP (ENSPANG00000025021) #28	EDEM2 (ENSPANG00000025548) #29	PROCR (ENSPANG00000014243) #30	MMP24 (ENSPANG00000019312) #31	EIF6 (ENSPANG00000020001) #32	FAM83C (ENSPANG00000009736) #33	UQCC (ENSPANG00000020456) #34	GDF5 (ENSPANG00000007525) #36	ENSPANG00000003013 #35	CEP250 (ENSPANG00000020002)	C20orf173 (ENSPANG00000011159)
Macaca	ANCESTRAL SPECIES	16	ENSGT00390000000546	ENSGT00940000154663.u	ENSGT00390000013771.v	ENSGT00940000157601	ENSGT00390000001804.cb.b.a.a	ENSGT00910000147823	ENSGT00390000001804.cb.b.a.b	ENSGT00940000153095.g.b.a.b.o	ENSGT00390000007890.c.a	ENSGT00940000154258.a #15	ENSGT00950000182981.a #16	ENSGT00940000157014 #18	ENSGT00390000011067.A #19	ENSGT00940000158853 #20	ENSGT00390000014941 #21	ENSGT00530000063829.C #22	ENSGT00730000111114 #23	ENSGT00940000153299.c.b.a.b.a.b	ENSGT00940000156917 #24	ENSGT00940000156358 #25	ENSGT00390000013764 #26	ENSGT00940000160950 #27	ENSGT00390000018330 #28	ENSGT00940000159233 #29	ENSGT00390000001159 #30	ENSGT00940000158315 #31	ENSGT00390000015972 #32	ENSGT00940000160254 #33	ENSGT00390000018118 #34	ENSGT00940000160455 #36	ENSGT00400000024545 #35
Macaca_a	ANCESTRAL SPECIES	18	ENSGT00390000013020	ENSGT00940000159472	ENSGT01100000263539.b.b.b.a.a.a.b	ENSGT00390000001562	ENSGT00390000000546	ENSGT00940000154663.u	ENSGT00940000157601	ENSGT00390000001804.cb.b.a.a	ENSGT00940000153095.g.b.a.b.o	ENSGT00940000154258.a #15	ENSGT00950000182981.a #16	ENSGT00940000157014 #18	ENSGT00390000011067.A #19	ENSGT00940000158853 #20	ENSGT00390000014941 #21	ENSGT00530000063829.C #22	ENSGT00730000111114 #23	ENSGT00940000156917 #24	ENSGT00940000156358 #25	ENSGT00390000013764 #26	ENSGT00940000160950 #27	ENSGT00390000018330 #28	ENSGT00940000159233 #29	ENSGT00390000001159 #30	ENSGT00940000158315 #31	ENSGT00390000015972 #32	ENSGT00940000160254 #33	ENSGT00390000018118 #34	ENSGT00940000160455 #36	ENSGT00400000024545 #35	ENSGT00940000161056.h
Crab-eating macaque	MODERN SPECIES	1	E2F1 (ENSMFAG00000042416)	ENSMFAG00000047376	ENSMFAG00000039376	ENSMFAG00000045920	CHMP4B (ENSMFAG00000040050)	ENSMFAG00000051093	ENSMFAG00000050321	RALY (ENSMFAG00000033131)	EIF2S2 (ENSMFAG00000037155)	AHCY (ENSMFAG00000031669) #16	ITCH (ENSMFAG00000041734) #18	ENSMFAG00000055213	DYNLRB1 (ENSMFAG00000033935) #19	MAP1LC3A (ENSMFAG00000035423) #20	PIGU (ENSMFAG00000042795) #21	TP53INP2 (ENSMFAG00000057837) #22	NCOA6 (ENSMFAG00000015862) #23	GGT7 (ENSMFAG00000046311) #24	ACSS2 (ENSMFAG00000037662) #25	GSS (ENSMFAG00000042365) #26	TRPC4AP (ENSMFAG00000036701) #28	EDEM2 (ENSMFAG00000002746) #29	PROCR (ENSMFAG00000003141) #30	MMP24 (ENSMFAG00000043972) #31	UQCC1 (ENSMFAG00000034648) #34	EIF6 (ENSMFAG00000031657) #32	FAM83C (ENSMFAG00000038878) #33	GDF5 (ENSMFAG00000037058) #36	ENSMFAG00000051683	C20orf173 (ENSMFAG00000040638)	ERGIC3 (ENSMFAG00000037850)
Rhesus	MODERN SPECIES	1	C10H20orf144 (ENSMMUG00000023548)	E2F1 (ENSMMUG00000023550)	ENSMMUG00000064963	PXMP4 (ENSMMUG00000023551)	ZNF341 (ENSMMUG00000021492)	CHMP4B (ENSMMUG00000008084)	RALY (ENSMMUG00000018093)	EIF2S2 (ENSMMUG00000018095)	ENSMMUG00000056046	ASIP (ENSMMUG00000061171) #15	AHCY (ENSMMUG00000016306) #16	ITCH (ENSMMUG00000012912) #18	DYNLRB1 (ENSMMUG00000031253) #19	MAP1LC3A (ENSMMUG00000045825) #20	PIGU (ENSMMUG00000063752) #21	TP53INP2 (ENSMMUG00000055449) #22	NCOA6 (ENSMMUG00000010715) #23	GGT7 (ENSMMUG00000017931) #24	ACSS2 (ENSMMUG00000017932) #25	GSS (ENSMMUG00000017940) #26	MYH7B (ENSMMUG00000000227) #27	TRPC4AP (ENSMMUG00000000229) #28	EDEM2 (ENSMMUG00000010032) #29	PROCR (ENSMMUG00000055802) #30	MMP24 (ENSMMUG00000018206) #31	EIF6 (ENSMMUG00000018208) #32	FAM83C (ENSMMUG00000018210) #33	UQCC1 (ENSMMUG00000010403) #34	GDF5 (ENSMMUG00000057979) #36	ENSMMUG00000031274 #35	CEP250 (ENSMMUG00000007335)
Pig-tailed macaque	MODERN SPECIES	232	CHMP4B (ENSMNEG00000032657)	ENSMNEG00000039504	RALY (ENSMNEG00000044988)	ENSMNEG00000018000	EIF2S2 (ENSMNEG00000029852)	ENSMNEG00000044539	ENSMNEG00000029730	ASIP (ENSMNEG00000040686) #15	ENSMNEG00000030944	AHCY (ENSMNEG00000040072) #16	ITCH (ENSMNEG00000029678) #18	ENSMNEG00000030104 #17	DYNLRB1 (ENSMNEG00000030752) #19	MAP1LC3A (ENSMNEG00000033581) #20	PIGU (ENSMNEG00000032759) #21	TP53INP2 (ENSMNEG00000044717) #22	NCOA6 (ENSMNEG00000036296) #23	ENSMNEG00000031465	GGT7 (ENSMNEG00000032224) #24	ACSS2 (ENSMNEG00000043732) #25	GSS (ENSMNEG00000033011) #26	MYH7B (ENSMNEG00000029838) #27	TRPC4AP (ENSMNEG00000041900) #28	EDEM2 (ENSMNEG00000032794) #29	PROCR (ENSMNEG00000029304) #30	MMP24 (ENSMNEG00000028095) #31	EIF6 (ENSMNEG00000030745) #32	FAM83C (ENSMNEG00000028152) #33	UQCC1 (ENSMNEG00000035001) #34	GDF5 (ENSMNEG00000029017) #36	ENSMNEG00000020059 #35
Vervet Monkey	MODERN SPECIES	11	NECAB3 (ENSCSAG00000012279)	C20orf144 (ENSCSAG00000012277)	ACTL10 (ENSCSAG00000018668)	E2F1 (ENSCSAG00000012265)	PXMP4 (ENSCSAG00000012247)	ZNF341 (ENSCSAG00000012235)	CHMP4B (ENSCSAG00000012213)	RALY (ENSCSAG00000012199)	EIF2S2 (ENSCSAG00000012138)	ASIP (ENSCSAG00000012125) #15	AHCY (ENSCSAG00000012115) #16	ITCH (ENSCSAG00000012102) #18	DYNLRB1 (ENSCSAG00000012088) #19	MAP1LC3A (ENSCSAG00000012080) #20	PIGU (ENSCSAG00000012058) #21	TP53INP2 (ENSCSAG00000011995) #22	NCOA6 (ENSCSAG00000011982) #23	GGT7 (ENSCSAG00000011967) #24	ACSS2 (ENSCSAG00000011945) #25	GSS (ENSCSAG00000011868) #26	MYH7B (ENSCSAG00000011856) #27	TRPC4AP (ENSCSAG00000011828) #28	EDEM2 (ENSCSAG00000011816) #29	PROCR (ENSCSAG00000011810) #30	BTBD3 (ENSCSAG00000011805)	ENSCSAG00000018669	SPTLC3 (ENSCSAG00000011801)	ISM1 (ENSCSAG00000011795)	TASP1 (ENSCSAG00000011790)	ESF1 (ENSCSAG00000011777)	NDUFAF5 (ENSCSAG00000011769)
Rhinopithecus	ANCESTRAL SPECIES	28	ENSGT00950000183131.a	ENSGT00940000159472	ENSGT00390000001562	ENSGT00390000000546	ENSGT00940000154663.u	ENSGT00390000013771.v	ENSGT00940000157601	ENSGT00390000001804.cb.b.a.b.d	ENSGT00390000001804.cb.b.b	ENSGT00940000154258.a #15	ENSGT00950000182981.a #16	ENSGT00940000157014 #18	ENSGT00390000011067.A #19	ENSGT00940000158853 #20	ENSGT00390000014941 #21	ENSGT00530000063829.C #22	ENSGT00730000111114 #23	ENSGT00940000156917 #24	ENSGT00940000156358 #25	ENSGT00390000013764 #26	ENSGT00940000160950 #27	ENSGT00390000018330 #28	ENSGT00940000159233 #29	ENSGT00390000001159 #30	ENSGT00940000158315 #31	ENSGT00390000015972 #32	ENSGT00940000160254 #33	ENSGT00390000018118 #34	ENSGT00940000160455 #36	ENSGT00400000024545 #35	ENSGT00940000161056
Golden snub-nosed monkey	MODERN SPECIES	2580								ENSRROG00000041602	ASIP (ENSRROG00000045056) #15	ENSRROG00000035300 #16	ITCH (ENSRROG00000030636) #18	ENSRROG00000031169	DYNLRB1 (ENSRROG00000029830) #19	MAP1LC3A (ENSRROG00000032284) #20	PIGU (ENSRROG00000029312) #21	TP53INP2 (ENSRROG00000040422) #22	NCOA6 (ENSRROG00000030181) #23	GGT7 (ENSRROG00000039407) #24	ACSS2 (ENSRROG00000029739) #25	GSS (ENSRROG00000027712) #26	MYH7B (ENSRROG00000038094) #27	TRPC4AP (ENSRROG00000040236) #28	ENSRROG00000035110	EDEM2 (ENSRROG00000033326) #29	PROCR (ENSRROG00000035122) #30	MMP24 (ENSRROG00000034337) #31	EIF6 (ENSRROG00000026884) #32	FAM83C (ENSRROG00000040897) #33	UQCC1 (ENSRROG00000041381) #34	GDF5 (ENSRROG00000017000) #36	ENSRROG00000011104 #35
Black snub-nosed monkey	MODERN SPECIES	75	E2F1 (ENSRBIG00000033055)	PXMP4 (ENSRBIG00000028626)	ZNF341 (ENSRBIG00000034139)	CHMP4B (ENSRBIG00000043046)	ENSRBIG00000033900	RALY (ENSRBIG00000030203)	ENSRBIG00000042624	ASIP (ENSRBIG00000039743) #15	ENSRBIG00000032079	ENSRBIG00000034932	AHCY (ENSRBIG00000027979) #16	ITCH (ENSRBIG00000035908) #18	DYNLRB1 (ENSRBIG00000042173) #19	MAP1LC3A (ENSRBIG00000034582) #20	PIGU (ENSRBIG00000004516) #21	TP53INP2 (ENSRBIG00000003470) #22	NCOA6 (ENSRBIG00000037755) #23	GGT7 (ENSRBIG00000036786) #24	ACSS2 (ENSRBIG00000044131) #25	GSS (ENSRBIG00000027587) #26	MYH7B (ENSRBIG00000043014) #27	TRPC4AP (ENSRBIG00000003148) #28
Hominoidea	ANCESTRAL SPECIES	17	ENSGT00940000162922	ENSGT00940000159472	ENSGT00390000001562	ENSGT00390000000546	ENSGT00940000154663.u	ENSGT00390000013771.v	ENSGT00940000157601	ENSGT00390000001804.cb.b.c.a	ENSGT00940000154258.a #15	ENSGT00950000182981.a #16	ENSGT00940000153675.a.a.b.e.a.g.b #17	ENSGT00940000157014 #18	ENSGT00390000011067.A #19	ENSGT00940000158853 #20	ENSGT00390000014941 #21	ENSGT00530000063829.C #22	ENSGT00730000111114 #23	ENSGT00940000153299.c.b.a.b.a.b	ENSGT00940000156917 #24	ENSGT00940000156358 #25	ENSGT00390000013764 #26	ENSGT00940000160950 #27	ENSGT00390000018330 #28	ENSGT00940000159233 #29	ENSGT00390000001159 #30	ENSGT00940000158315 #31	ENSGT01100000263751	ENSGT00390000015972 #32	ENSGT00940000160254 #33	ENSGT00390000018118 #34	ENSGT00940000160455 #36
Hominidae	ANCESTRAL SPECIES	18	ENSGT00940000162922	ENSGT00940000159472	ENSGT00390000001562	ENSGT00390000000546	ENSGT00940000154663.u	ENSGT00390000013771.v	ENSGT00940000157601	ENSGT00390000001804.cb.b.c.a	ENSGT00940000154258.a #15	ENSGT00950000182981.a #16	ENSGT00940000153675.a.a.b.e.a.g.b #17	ENSGT00940000157014 #18	ENSGT00390000011067.A #19	ENSGT00940000158853 #20	ENSGT00390000014941 #21	ENSGT00530000063829.C #22	ENSGT00730000111114 #23	ENSGT00940000153299.c.b.a.b.a.b	ENSGT00940000156917 #24	ENSGT00940000156358 #25	ENSGT00390000013764 #26	ENSGT00940000160950 #27	ENSGT00390000018330 #28	ENSGT00940000159233 #29	ENSGT00390000001159 #30	ENSGT00940000158315 #31	ENSGT01100000263751	ENSGT00390000015972 #32	ENSGT00940000160254 #33	ENSGT00390000018118 #34	ENSGT00940000160455 #36
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	16	ENSGT00390000013020	ENSGT00940000162922	ENSGT00940000159472	ENSGT00390000001562	ENSGT00390000000546	ENSGT00950000183030.m.a.a.b.a.b.a.b	ENSGT00940000154663.u	ENSGT00940000157601	ENSGT00390000001804.cb.b.c.a	ENSGT00940000154258.a #15	ENSGT00940000163568	ENSGT00940000157014 #18	ENSGT00390000011067.A #19	ENSGT00940000158853 #20	ENSGT00390000014941 #21	ENSGT00530000063829.C #22	ENSGT00730000111114 #23	ENSGT00940000153299.c.b.a.b.a.b	ENSGT00940000156917 #24	ENSGT00940000156358 #25	ENSGT00390000013764 #26	ENSGT00940000160950 #27	ENSGT00390000018330 #28	ENSGT00940000159233 #29	ENSGT00390000001159 #30	ENSGT00940000158315 #31	ENSGT01100000265414	ENSGT00390000015972 #32	ENSGT00940000160254 #33	ENSGT00390000018118 #34	ENSGT00940000160455 #36
Gorilla	MODERN SPECIES	11	ZNF341 (ENSGGOG00000015775)	ENSGGOG00000025590	CHMP4B (ENSGGOG00000007775)	RALY (ENSGGOG00000022709)	ENSGGOG00000015546	ENSGGOG00000027170	ASIP (ENSGGOG00000026572) #15	ENSGGOG00000040622	AHCY (ENSGGOG00000014694) #16	ITCH (ENSGGOG00000007233) #18	ENSGGOG00000043054	ENSGGOG00000027314	ENSGGOG00000023900 #19	MAP1LC3A (ENSGGOG00000006431) #20	PIGU (ENSGGOG00000006437) #21	TP53INP2 (ENSGGOG00000004118) #22	NCOA6 (ENSGGOG00000009617) #23	ENSGGOG00000037940	GGT7 (ENSGGOG00000014964) #24	ACSS2 (ENSGGOG00000006934) #25	GSS (ENSGGOG00000006950) #26	EDEM2 (ENSGGOG00000013171) #29	PROCR (ENSGGOG00000001019) #30	MMP24 (ENSGGOG00000012090) #31	MMP24OS (ENSGGOG00000039535)	EIF6 (ENSGGOG00000012097) #32	FAM83C (ENSGGOG00000012107) #33	UQCC1 (ENSGGOG00000012109) #34	GDF5 (ENSGGOG00000015513) #36	ENSGGOG00000040812 #35	CEP250 (ENSGGOG00000008213)
Homo/Pan group	ANCESTRAL SPECIES	17	ENSGT00940000162922	ENSGT00940000159472	ENSGT00390000001562	ENSGT00390000000546	ENSGT00950000183030.m.a.a.b.a.b.a.b	ENSGT00940000154663.u	ENSGT00940000157601	ENSGT00390000001804.cb.b.c.a	ENSGT00940000154258.a #15	ENSGT00950000182981.a #16	ENSGT00940000163568	ENSGT00940000157014 #18	ENSGT00390000011067.A #19	ENSGT00940000158853 #20	ENSGT00390000014941 #21	ENSGT00530000063829.C #22	ENSGT00730000111114 #23	ENSGT00940000156917 #24	ENSGT00940000156358 #25	ENSGT00390000013764 #26	ENSGT00940000160950 #27	ENSGT00390000018330 #28	ENSGT00940000159233 #29	ENSGT00390000001159 #30	ENSGT00940000158315 #31	ENSGT01100000265414	ENSGT00390000015972 #32	ENSGT00940000160254 #33	ENSGT00390000018118 #34	ENSGT00940000160455 #36	ENSGT00400000024545 #35
Human	MODERN SPECIES	12	C20orf144 (ENSG00000149609)	ACTL10 (ENSG00000288649)	E2F1 (ENSG00000101412)	PXMP4 (ENSG00000101417)	ZNF341 (ENSG00000131061)	CHMP4B (ENSG00000101421)	RALY (ENSG00000125970)	EIF2S2 (ENSG00000125977)	ASIP (ENSG00000101440) #15	AHCY (ENSG00000101444) #16	ITCH (ENSG00000078747) #18	DYNLRB1 (ENSG00000125971) #19	MAP1LC3A (ENSG00000101460) #20	PIGU (ENSG00000101464) #21	NCOA6 (ENSG00000198646) #23	TP53INP2 (ENSG00000078804) #22	GGT7 (ENSG00000131067) #24	ACSS2 (ENSG00000131069) #25	GSS (ENSG00000100983) #26	MYH7B (ENSG00000078814) #27	TRPC4AP (ENSG00000100991) #28	EDEM2 (ENSG00000088298) #29	PROCR (ENSG00000101000) #30	MMP24OS (ENSG00000126005)	MMP24 (ENSG00000125966) #31	EIF6 (ENSG00000242372) #32	FAM83C (ENSG00000125998) #33	UQCC1 (ENSG00000101019) #34	GDF5 (ENSG00000125965) #36	CEP250 (ENSG00000126001)	C20orf173 (ENSG00000125975)
Pan	ANCESTRAL SPECIES	15	ENSGT00940000162922	ENSGT00940000159472	ENSGT00390000001562	ENSGT00390000000546	ENSGT00950000183030.m.a.a.b.a.b.a.b	ENSGT00940000154663.u	ENSGT00940000157601	ENSGT00390000001804.cb.b.d	ENSGT00940000154258.a #15	ENSGT00950000182981.a #16	ENSGT00940000163568	ENSGT00940000157014 #18	ENSGT00390000011067.A #19	ENSGT00940000158853 #20	ENSGT00390000014941 #21	ENSGT00530000063829.C #22	ENSGT00730000111114 #23	ENSGT00940000156917 #24	ENSGT00940000156358 #25	ENSGT00390000013764 #26	ENSGT00940000160950 #27	ENSGT00390000018330 #28	ENSGT00940000159233 #29	ENSGT00390000001159 #30	ENSGT00940000158315 #31	ENSGT00390000015972 #32	ENSGT00940000160254 #33	ENSGT00390000018118 #34	ENSGT00940000160455 #36	ENSGT00400000024545 #35	ENSGT00940000161056
Chimpanzee	MODERN SPECIES	11	ZNF341 (ENSPTRG00000013406)	ENSPTRG00000045113	CHMP4B (ENSPTRG00000013408)	RALY (ENSPTRG00000013410)	EIF2S2 (ENSPTRG00000013412)	ENSPTRG00000045368	ENSPTRG00000046065	ASIP (ENSPTRG00000013413) #15	AHCY (ENSPTRG00000013414) #16	ITCH (ENSPTRG00000013415) #18	ENSPTRG00000052824 #17	ENSPTRG00000045408	DYNLRB1 (ENSPTRG00000013416) #19	MAP1LC3A (ENSPTRG00000013417) #20	PIGU (ENSPTRG00000013418) #21	TP53INP2 (ENSPTRG00000013420) #22	NCOA6 (ENSPTRG00000013421) #23	GGT7 (ENSPTRG00000013423) #24	ACSS2 (ENSPTRG00000013424) #25	GSS (ENSPTRG00000013426) #26	MYH7B (ENSPTRG00000013428) #27	TRPC4AP (ENSPTRG00000013429) #28	EDEM2 (ENSPTRG00000013430) #29	PROCR (ENSPTRG00000013431) #30	ENSPTRG00000044049	MMP24 (ENSPTRG00000013434) #31	EIF6 (ENSPTRG00000013435) #32	FAM83C (ENSPTRG00000013437) #33	UQCC1 (ENSPTRG00000013438) #34	GDF5 (ENSPTRG00000013439) #36	ENSPTRG00000046383 #35
Bonobo	MODERN SPECIES	11	ENSPPAG00000037596	CHMP4B (ENSPPAG00000028496)	RALY (ENSPPAG00000034951)	ENSPPAG00000043449	ENSPPAG00000041611	ENSPPAG00000041601	ENSPPAG00000043799	ASIP (ENSPPAG00000031015) #15	AHCY (ENSPPAG00000037325) #16	ITCH (ENSPPAG00000043454) #18	ENSPPAG00000035927	ENSPPAG00000027765	ENSPPAG00000030059 #19	MAP1LC3A (ENSPPAG00000037098) #20	PIGU (ENSPPAG00000037046) #21	TP53INP2 (ENSPPAG00000000861) #22	NCOA6 (ENSPPAG00000034298) #23	GGT7 (ENSPPAG00000035145) #24	ACSS2 (ENSPPAG00000043497) #25	GSS (ENSPPAG00000029155) #26	MYH7B (ENSPPAG00000035729) #27	TRPC4AP (ENSPPAG00000024329) #28	EDEM2 (ENSPPAG00000035737) #29	PROCR (ENSPPAG00000028469) #30	MMP24 (ENSPPAG00000028979) #31	EIF6 (ENSPPAG00000030763) #32	FAM83C (ENSPPAG00000037890) #33	UQCC1 (ENSPPAG00000040071) #34	GDF5 (ENSPPAG00000018244) #36	ENSPPAG00000007512 #35	CEP250 (ENSPPAG00000030925)
Orangutan	MODERN SPECIES	11	C20orf144 (ENSPPYG00000010927)	ACTL10 (ENSPPYG00000010928)	E2F1 (ENSPPYG00000010929)	PXMP4 (ENSPPYG00000041080)	ZNF341 (ENSPPYG00000010930)	CHMP4B (ENSPPYG00000010931)	ENSPPYG00000041388	ENSPPYG00000010932	EIF2S2 (ENSPPYG00000010933)	ENSPPYG00000010934 #15	AHCY (ENSPPYG00000010935) #16	ITCH (ENSPPYG00000010936) #18	ENSPPYG00000010937 #19	ENSPPYG00000010938 #20	PIGU (ENSPPYG00000010939) #21	TP53INP2 (ENSPPYG00000010940) #22	NCOA6 (ENSPPYG00000010941) #23	ENSPPYG00000036249	GGT7 (ENSPPYG00000010942) #24	ACSS2 (ENSPPYG00000010943) #25	GSS (ENSPPYG00000010944) #26	MYH7B (ENSPPYG00000010945) #27	TRPC4AP (ENSPPYG00000010946) #28	EDEM2 (ENSPPYG00000010947) #29	PROCR (ENSPPYG00000033786) #30	MMP24 (ENSPPYG00000010948) #31	ENSPPYG00000030527	EIF6 (ENSPPYG00000010949) #32	FAM83C (ENSPPYG00000010950) #33	UQCC (ENSPPYG00000010951) #34	GDF5 (ENSPPYG00000010952) #36
Gibbon	MODERN SPECIES	3	ENSNLEG00000009989	E2F1 (ENSNLEG00000010009)	ENSNLEG00000029978	ZNF341 (ENSNLEG00000010013)	CHMP4B (ENSNLEG00000010020)	ENSNLEG00000035552	ENSNLEG00000010031	EIF2S2 (ENSNLEG00000010034)	ENSNLEG00000028939	ENSNLEG00000010041 #16	ENSNLEG00000030506	ITCH (ENSNLEG00000010045) #18	ENSNLEG00000010082 #19	MAP1LC3A (ENSNLEG00000010086) #20	PIGU (ENSNLEG00000010090) #21	TP53INP2 (ENSNLEG00000010104) #22	NCOA6 (ENSNLEG00000010107) #23	ENSNLEG00000028835	GGT7 (ENSNLEG00000010111) #24	ACSS2 (ENSNLEG00000010119) #25	GSS (ENSNLEG00000010145) #26	MYH7B (ENSNLEG00000032102) #27	TRPC4AP (ENSNLEG00000010157) #28	EDEM2 (ENSNLEG00000010181) #29	PROCR (ENSNLEG00000010201) #30	MMP24 (ENSNLEG00000010203) #31	ENSNLEG00000035782	EIF6 (ENSNLEG00000010207) #32	FAM83C (ENSNLEG00000010219) #33	UQCC1 (ENSNLEG00000035988) #34	ENSNLEG00000018271 #35
Platyrrhini	ANCESTRAL SPECIES	11	ENSGT00390000013020	ENSGT00940000162922	ENSGT00950000183131.a	ENSGT00940000159472	ENSGT00390000001562	ENSGT00390000000546	ENSGT00940000154663	ENSGT00940000157601	ENSGT00390000001804.cb.a	ENSGT00940000154258.a #15	ENSGT00950000182981.a.dc.b #16	ENSGT00940000157014 #18	ENSGT00390000011067.A #19	ENSGT00940000158853 #20	ENSGT00390000014941 #21	ENSGT00530000063829.C #22	ENSGT00730000111114 #23	ENSGT00940000156917 #24	ENSGT00940000156358 #25	ENSGT00390000013764 #26	ENSGT00940000160950 #27	ENSGT00390000018330 #28	ENSGT00940000159233 #29	ENSGT00390000001159 #30	ENSGT00940000158315 #31	ENSGT01100000265414	ENSGT00390000015972 #32	ENSGT00940000160254 #33	ENSGT00390000018118 #34	ENSGT00400000024545 #35	ENSGT00940000160455 #36
Mas night monkey	MODERN SPECIES	1017	E2F1 (ENSANAG00000029428)	PXMP4 (ENSANAG00000031512)	ZNF341 (ENSANAG00000023240)	CHMP4B (ENSANAG00000023014)	RALY (ENSANAG00000019376)	ENSANAG00000022839	ASIP (ENSANAG00000030668) #15	ENSANAG00000033573 #16	ENSANAG00000014301	ITCH (ENSANAG00000027856) #18	ENSANAG00000023825 #19	MAP1LC3A (ENSANAG00000022249) #20	PIGU (ENSANAG00000035852) #21	ENSANAG00000032881	ENSANAG00000013769	TP53INP2 (ENSANAG00000036290) #22	NCOA6 (ENSANAG00000022285) #23	ENSANAG00000029128	GGT7 (ENSANAG00000028329) #24	ACSS2 (ENSANAG00000033642) #25	GSS (ENSANAG00000025065) #26	MYH7B (ENSANAG00000030486) #27	TRPC4AP (ENSANAG00000021875) #28	EDEM2 (ENSANAG00000035027) #29	PROCR (ENSANAG00000037248) #30	MMP24 (ENSANAG00000023779) #31	EIF6 (ENSANAG00000029529) #32	FAM83C (ENSANAG00000024148) #33	UQCC1 (ENSANAG00000020623) #34	GDF5 (ENSANAG00000027413) #36	ENSANAG00000037254 #35
Cebidae	ANCESTRAL SPECIES	13	ENSGT00390000013020	ENSGT00940000162922	ENSGT00950000183131.a	ENSGT00940000159472	ENSGT00390000001562	ENSGT00390000000546	ENSGT00940000154663	ENSGT00940000157601	ENSGT00390000001804.cb.a.c	ENSGT00940000154258.a #15	ENSGT00950000182981.a.dc.b #16	ENSGT00940000157014 #18	ENSGT00390000011067.A #19	ENSGT00940000158853 #20	ENSGT00390000014941 #21	ENSGT00530000063829.C #22	ENSGT00730000111114 #23	ENSGT00940000156917 #24	ENSGT00940000156358 #25	ENSGT00390000013764 #26	ENSGT00940000160950 #27	ENSGT00390000018330 #28	ENSGT00940000159233 #29	ENSGT00390000001159 #30	ENSGT00940000158315 #31	ENSGT01100000265414	ENSGT00390000015972 #32	ENSGT00940000160254 #33	ENSGT00390000018118 #34	ENSGT00400000024545 #35	ENSGT00940000160455 #36
Marmoset	MODERN SPECIES	17	NECAB3 (ENSCJAG00000018455)	E2F1 (ENSCJAG00000018451)	PXMP4 (ENSCJAG00000080526)	ZNF341 (ENSCJAG00000018423)	CHMP4B (ENSCJAG00000018397)	ENSCJAG00000018361	ENSCJAG00000018334	ASIP (ENSCJAG00000018327) #15	AHCY (ENSCJAG00000018303) #16	ENSCJAG00000084324	ENSCJAG00000047561	ITCH (ENSCJAG00000018204) #18	ENSCJAG00000079373 #19	MAP1LC3A (ENSCJAG00000045544) #20	PIGU (ENSCJAG00000018152) #21	TP53INP2 (ENSCJAG00000057751) #22	NCOA6 (ENSCJAG00000018049) #23	GGT7 (ENSCJAG00000018095) #24	ACSS2 (ENSCJAG00000018019) #25	GSS (ENSCJAG00000017992) #26	MYH7B (ENSCJAG00000017977) #27	TRPC4AP (ENSCJAG00000017914) #28	EDEM2 (ENSCJAG00000017880) #29	PROCR (ENSCJAG00000017877) #30	ENSCJAG00000039019	MMP24 (ENSCJAG00000017865) #31	MMP24OS (ENSCJAG00000060058)	EIF6 (ENSCJAG00000017846) #32	FAM83C (ENSCJAG00000017842) #33	UQCC1 (ENSCJAG00000017831) #34	GDF5 (ENSCJAG00000017826) #36
Cebidae_a	ANCESTRAL SPECIES	2	ENSGT00940000162922	ENSGT00950000183131.a	ENSGT00940000159472	ENSGT00390000001562	ENSGT00390000000546	ENSGT00940000154663	ENSGT00940000157601	ENSGT00390000001804.cb.a.c	ENSGT00940000154258.a #15	ENSGT00950000182981.a.dc.b #16	ENSGT00940000157014 #18	ENSGT00390000011067.A #19	ENSGT00940000158853 #20	ENSGT00930000150941.x.a.b.a	ENSGT00390000014941 #21	ENSGT00530000063829.C #22	ENSGT00390000015537.bb.b	ENSGT00730000111114 #23	ENSGT00940000156917 #24	ENSGT00940000156358 #25	ENSGT00390000013764 #26	ENSGT00940000160950 #27	ENSGT00390000018330 #28	ENSGT00940000159233 #29	ENSGT00390000001159 #30	ENSGT00940000158315 #31	ENSGT01100000265414	ENSGT00390000015972 #32	ENSGT00940000160254 #33	ENSGT00390000018118 #34	ENSGT00400000024545 #35
Bolivian squirrel monkey	MODERN SPECIES	89	ACTL10 (ENSSBOG00000004671)	NECAB3 (ENSSBOG00000036045)	E2F1 (ENSSBOG00000028962)	PXMP4 (ENSSBOG00000005223)	ZNF341 (ENSSBOG00000026329)	CHMP4B (ENSSBOG00000030524)	RALY (ENSSBOG00000001418)	ENSSBOG00000020845	ENSSBOG00000035159	AHCY (ENSSBOG00000018930) #16	ITCH (ENSSBOG00000028570) #18	ENSSBOG00000034562	MAP1LC3A (ENSSBOG00000027529) #20	ENSSBOG00000036011	PIGU (ENSSBOG00000019453) #21	TP53INP2 (ENSSBOG00000034807) #22	ENSSBOG00000031077	NCOA6 (ENSSBOG00000035825) #23	GGT7 (ENSSBOG00000027087) #24	ACSS2 (ENSSBOG00000035237) #25	GSS (ENSSBOG00000032771) #26	MYH7B (ENSSBOG00000028792) #27	TRPC4AP (ENSSBOG00000031386) #28	EDEM2 (ENSSBOG00000035788) #29	PROCR (ENSSBOG00000034753) #30	MMP24 (ENSSBOG00000027876) #31	EIF6 (ENSSBOG00000027892) #32	FAM83C (ENSSBOG00000025721) #33	UQCC1 (ENSSBOG00000015918) #34	ENSSBOG00000022883 #35	GDF5 (ENSSBOG00000015812) #36
Capuchin	MODERN SPECIES	18	NECAB3 (ENSCCAG00000025337)	E2F1 (ENSCCAG00000031862)	PXMP4 (ENSCCAG00000023929)	ZNF341 (ENSCCAG00000022663)	CHMP4B (ENSCCAG00000035412)	RALY (ENSCCAG00000024548)	ENSCCAG00000035446	ASIP (ENSCCAG00000034213) #15	ENSCCAG00000036415 #16	ITCH (ENSCCAG00000036090) #18	ENSCCAG00000026601 #19	MAP1LC3A (ENSCCAG00000026883) #20	ENSCCAG00000018006	ENSCCAG00000020219	PIGU (ENSCCAG00000032834) #21	TP53INP2 (ENSCCAG00000029034) #22	ENSCCAG00000033808	NCOA6 (ENSCCAG00000011874) #23	GGT7 (ENSCCAG00000027060) #24	ACSS2 (ENSCCAG00000030998) #25	GSS (ENSCCAG00000032388) #26	MYH7B (ENSCCAG00000029746) #27	TRPC4AP (ENSCCAG00000033819) #28	EDEM2 (ENSCCAG00000025032) #29	PROCR (ENSCCAG00000029686) #30	MMP24 (ENSCCAG00000029749) #31	MMP24OS (ENSCCAG00000003817)	EIF6 (ENSCCAG00000030532) #32	FAM83C (ENSCCAG00000025013) #33	UQCC1 (ENSCCAG00000020072) #34	ENSCCAG00000028751 #35
Tarsier	MODERN SPECIES	7237														PIGU (ENSTSYG00000010525) #21	ENSTSYG00000027696	ENSTSYG00000035201 #22
Strepsirrhini	ANCESTRAL SPECIES	12	ENSGT00950000183131.a	ENSGT00390000013020	ENSGT00940000162922	ENSGT00940000159472	ENSGT00390000001562	ENSGT00390000000546	ENSGT00940000154663	ENSGT00940000157601	ENSGT00390000001804	ENSGT00940000154258.a #15	ENSGT00950000182981.a #16	ENSGT00940000157014 #18	ENSGT00390000011067.A #19	ENSGT00940000158853 #20	ENSGT00390000014941 #21	ENSGT00530000063829.C #22	ENSGT00730000111114 #23	ENSGT00940000156917 #24	ENSGT00940000156358 #25	ENSGT00390000013764 #26	ENSGT00940000160950 #27	ENSGT00390000018330 #28	ENSGT00940000159233 #29	ENSGT00390000001159 #30	ENSGT00940000158315 #31	ENSGT00390000015972 #32	ENSGT00940000160254 #33	ENSGT00390000018118 #34	ENSGT00940000160455 #36	ENSGT00400000024545 #35	ENSGT00940000161056
Lemuriformes	ANCESTRAL SPECIES	10	ENSGT00950000183131.a	ENSGT00390000013020	ENSGT00940000162922	ENSGT00940000159472	ENSGT00390000001562	ENSGT00390000000546	ENSGT00940000154663	ENSGT00940000157601	ENSGT00390000001804	ENSGT00940000154258.a #15	ENSGT00950000182981.a #16	ENSGT00940000157014 #18	ENSGT00390000011067.A #19	ENSGT00940000158853 #20	ENSGT00390000014941 #21	ENSGT00530000063829.C #22	ENSGT00730000111114 #23	ENSGT00940000156917 #24	ENSGT00940000156358 #25	ENSGT00390000013764 #26	ENSGT00940000160950 #27	ENSGT00390000018330 #28	ENSGT00940000159233 #29	ENSGT00390000001159 #30	ENSGT00940000158315 #31	ENSGT00390000015972 #32	ENSGT00940000160254 #33	ENSGT00390000018118 #34	ENSGT00400000024545 #35	ENSGT00940000160455 #36	ENSGT00940000161056
Lemuriformes_a	ANCESTRAL SPECIES	26	ENSGT00950000183131.a	ENSGT00390000013020	ENSGT00940000162922	ENSGT00940000159472	ENSGT00390000001562	ENSGT00390000000546	ENSGT00940000154663	ENSGT00940000157601	ENSGT00390000001804	ENSGT00940000154258.a #15	ENSGT00950000182981.a #16	ENSGT00940000157014 #18	ENSGT00390000011067.A #19	ENSGT00940000158853 #20	ENSGT00390000014941 #21	ENSGT00530000063829.C #22	ENSGT00730000111114 #23	ENSGT00940000156917 #24	ENSGT00940000156358 #25	ENSGT00390000013764 #26	ENSGT00940000160950 #27	ENSGT00390000018330 #28	ENSGT00940000159233 #29	ENSGT00390000001159 #30	ENSGT00940000158315 #31	ENSGT00390000015972 #32	ENSGT00940000160254 #33	ENSGT00390000018118 #34	ENSGT00400000024545 #35	ENSGT00940000160455 #36	ENSGT00940000161056
Coquerels sifaka	MODERN SPECIES	126	E2F1 (ENSPCOG00000020987)	PXMP4 (ENSPCOG00000024717)	ZNF341 (ENSPCOG00000023267)	CHMP4B (ENSPCOG00000019410)	RALY (ENSPCOG00000016363)	EIF2S2 (ENSPCOG00000023384)	ENSPCOG00000016432	ENSPCOG00000016748	ASIP (ENSPCOG00000010026) #15	AHCY (ENSPCOG00000028404) #16	ENSPCOG00000023647	ITCH (ENSPCOG00000009922) #18	ENSPCOG00000014374 #19	MAP1LC3A (ENSPCOG00000027110) #20	PIGU (ENSPCOG00000020520) #21	TP53INP2 (ENSPCOG00000021152) #22	NCOA6 (ENSPCOG00000022758) #23	GGT7 (ENSPCOG00000018869) #24	ACSS2 (ENSPCOG00000019139) #25	GSS (ENSPCOG00000026947) #26	MYH7B (ENSPCOG00000020539) #27	TRPC4AP (ENSPCOG00000013569) #28	EDEM2 (ENSPCOG00000023491) #29	PROCR (ENSPCOG00000014168) #30	MMP24 (ENSPCOG00000025865) #31	EIF6 (ENSPCOG00000014898) #32	FAM83C (ENSPCOG00000022524) #33	UQCC1 (ENSPCOG00000001441) #34	GDF5 (ENSPCOG00000021580) #36	CEP250 (ENSPCOG00000012429)	C20orf173 (ENSPCOG00000017734)
Greater bamboo lemur	MODERN SPECIES	98	NECAB3 (ENSPSMG00000018052)	ENSPSMG00000018069	ACTL10 (ENSPSMG00000018073)	E2F1 (ENSPSMG00000018083)	PXMP4 (ENSPSMG00000018104)	ZNF341 (ENSPSMG00000018155)	CHMP4B (ENSPSMG00000018182)	RALY (ENSPSMG00000018249)	EIF2S2 (ENSPSMG00000018322)	ASIP (ENSPSMG00000018334) #15	AHCY (ENSPSMG00000018371) #16	ITCH (ENSPSMG00000018448) #18	ENSPSMG00000018498 #19	MAP1LC3A (ENSPSMG00000018505) #20	PIGU (ENSPSMG00000018561) #21	TP53INP2 (ENSPSMG00000018569) #22	NCOA6 (ENSPSMG00000018681) #23
Mouse lemur	MODERN SPECIES	9	NECAB3 (ENSMICG00000006906)	E2F1 (ENSMICG00000006921)	ENSMICG00000028174	ZNF341 (ENSMICG00000047832)	ENSMICG00000042802	RALY (ENSMICG00000039074)	ENSMICG00000006944	ASIP (ENSMICG00000044506) #15	AHCY (ENSMICG00000003232) #16	ENSMICG00000032740	ENSMICG00000034345	ITCH (ENSMICG00000003238) #18	DYNLRB1 (ENSMICG00000003253) #19	MAP1LC3A (ENSMICG00000028466) #20	PIGU (ENSMICG00000003257) #21	TP53INP2 (ENSMICG00000042490) #22	NCOA6 (ENSMICG00000032033) #23	GGT7 (ENSMICG00000004896) #24	ACSS2 (ENSMICG00000004916) #25	GSS (ENSMICG00000004941) #26	MYH7B (ENSMICG00000004956) #27	TRPC4AP (ENSMICG00000005010) #28	EDEM2 (ENSMICG00000046463) #29	PROCR (ENSMICG00000038532) #30	MMP24 (ENSMICG00000005999) #31	FAM83C (ENSMICG00000013976) #33	EIF6 (ENSMICG00000006009) #32	UQCC1 (ENSMICG00000006027) #34	GDF5 (ENSMICG00000030851) #36	CEP250 (ENSMICG00000007393)	C20orf173 (ENSMICG00000004178)
Bushbaby	MODERN SPECIES	140	CBFA2T2 (ENSOGAG00000015051)	NECAB3 (ENSOGAG00000028758)	ACTL10 (ENSOGAG00000010438)	E2F1 (ENSOGAG00000024304)	PXMP4 (ENSOGAG00000010440)	ZNF341 (ENSOGAG00000010441)	CHMP4B (ENSOGAG00000010444)	ENSOGAG00000013532	RALY (ENSOGAG00000032337)	ENSOGAG00000001417	AHCY (ENSOGAG00000016787) #16	ITCH (ENSOGAG00000016792) #18	ENSOGAG00000016802 #19	MAP1LC3A (ENSOGAG00000027682) #20	PIGU (ENSOGAG00000003518) #21	TP53INP2 (ENSOGAG00000006332) #22	NCOA6 (ENSOGAG00000006333) #23	GGT7 (ENSOGAG00000012970) #24	ACSS2 (ENSOGAG00000001803) #25	GSS (ENSOGAG00000001806) #26	MYH7B (ENSOGAG00000001809) #27	TRPC4AP (ENSOGAG00000001822) #28	ENSOGAG00000029126	ENSOGAG00000026955	EDEM2 (ENSOGAG00000001826) #29	PROCR (ENSOGAG00000001829) #30	MMP24 (ENSOGAG00000008970) #31	EIF6 (ENSOGAG00000001831) #32	FAM83C (ENSOGAG00000001833) #33	UQCC1 (ENSOGAG00000001840) #34	GDF5 (ENSOGAG00000029192) #36
Euarchontoglires_A	ANCESTRAL SPECIES	16	ENSGT00950000183131.a	ENSGT00390000013020	ENSGT00940000162922	ENSGT00940000159472	ENSGT00390000001562	ENSGT00390000000546	ENSGT00940000154663	ENSGT00940000157601	ENSGT00390000001804	ENSGT00940000154258.a #15	ENSGT00950000182981.a #16	ENSGT00940000157014 #18	ENSGT00390000011067.A #19	ENSGT00940000158853 #20	ENSGT00390000014941 #21	ENSGT00530000063829.C #22	ENSGT00730000111114 #23	ENSGT00940000156917 #24	ENSGT00940000156358 #25	ENSGT00390000013764 #26	ENSGT00940000160950 #27	ENSGT00390000018330 #28	ENSGT00940000159233 #29	ENSGT00390000001159 #30	ENSGT00940000158315 #31	ENSGT01100000263751	ENSGT00390000015972 #32	ENSGT00940000160254 #33	ENSGT00390000018118 #34	ENSGT00940000160455 #36	ENSGT00400000024545 #35
Glires	ANCESTRAL SPECIES	17	ENSGT00950000183131.a	ENSGT00390000013020	ENSGT00940000162922	ENSGT00940000159472	ENSGT00390000001562	ENSGT00390000000546	ENSGT00940000154663	ENSGT00940000157601	ENSGT00390000001804	ENSGT00940000154258.a #15	ENSGT00950000182981.a #16	ENSGT00940000157014 #18	ENSGT00390000011067.A #19	ENSGT00940000158853 #20	ENSGT00390000014941 #21	ENSGT00530000063829.C #22	ENSGT00730000111114 #23	ENSGT00940000156917 #24	ENSGT00940000156358 #25	ENSGT00390000013764 #26	ENSGT00940000160950 #27	ENSGT00390000018330 #28	ENSGT00940000159233 #29	ENSGT00390000001159 #30	ENSGT00940000158315 #31	ENSGT01100000263751	ENSGT00390000015972 #32	ENSGT00940000160254 #33	ENSGT00390000018118 #34	ENSGT00940000160455 #36	ENSGT00400000024545 #35
Rodentia	ANCESTRAL SPECIES	18	ENSGT00950000183131.a	ENSGT00390000013020	ENSGT00940000162922	ENSGT00940000159472	ENSGT00390000001562	ENSGT00390000000546	ENSGT00940000154663	ENSGT00940000157601	ENSGT00390000001804	ENSGT00940000154258.a #15	ENSGT00950000182981.a #16	ENSGT00940000157014 #18	ENSGT00390000011067.A #19	ENSGT00940000158853 #20	ENSGT00390000014941 #21	ENSGT00530000063829.C #22	ENSGT00730000111114 #23	ENSGT00940000156917 #24	ENSGT00940000156358 #25	ENSGT00390000013764 #26	ENSGT00940000160950 #27	ENSGT00390000018330 #28	ENSGT00940000159233 #29	ENSGT00390000001159 #30	ENSGT00940000158315 #31	ENSGT01100000263751	ENSGT00390000015972 #32	ENSGT00940000160254 #33	ENSGT00390000018118 #34	ENSGT00940000160455 #36	ENSGT00400000024545 #35
Rodentia_A	ANCESTRAL SPECIES	17	ENSGT00390000013020	ENSGT00940000162922	ENSGT00950000183131.a	ENSGT00940000159472	ENSGT00390000001562	ENSGT00390000000546	ENSGT00940000154663	ENSGT00940000157601	ENSGT00390000001804	ENSGT00940000154258.a #15	ENSGT00950000182981.a #16	ENSGT00940000157014 #18	ENSGT00390000011067.A #19	ENSGT00940000158853 #20	ENSGT00390000014941 #21	ENSGT00530000063829.C #22	ENSGT00730000111114 #23	ENSGT00940000156917 #24	ENSGT00940000156358 #25	ENSGT00390000013764 #26	ENSGT00940000160950 #27	ENSGT00390000018330 #28	ENSGT00940000159233 #29	ENSGT00390000001159 #30	ENSGT00940000158315 #31	ENSGT01100000263751	ENSGT00390000015972 #32	ENSGT00940000160254 #33	ENSGT00390000018118 #34	ENSGT00400000024545 #35	ENSGT00940000160455 #36
Sciuridae	ANCESTRAL SPECIES	13	ENSGT00950000183131.a	ENSGT00390000013020	ENSGT00940000162922	ENSGT00940000159472	ENSGT00390000001562	ENSGT00390000000546	ENSGT00940000154663	ENSGT00940000157601	ENSGT00390000001804	ENSGT00940000154258.a #15	ENSGT00950000182981.a #16	ENSGT00940000157014 #18	ENSGT00390000011067.A #19	ENSGT00940000158853 #20	ENSGT00390000014941 #21	ENSGT00530000063829.C #22	ENSGT00730000111114 #23	ENSGT00940000156917 #24	ENSGT00940000156358 #25	ENSGT00390000013764 #26	ENSGT00940000160950 #27	ENSGT00390000018330 #28	ENSGT00940000159233 #29	ENSGT00390000001159 #30	ENSGT00940000158315 #31	ENSGT01100000263751	ENSGT00390000015972 #32	ENSGT00940000160254 #33	ENSGT00390000018118 #34	ENSGT00400000024545 #35	ENSGT00940000160455 #36
Marmotini	ANCESTRAL SPECIES	5	ENSGT00390000013020	ENSGT00940000162922	ENSGT00950000183131.a	ENSGT00940000159472	ENSGT00390000001562	ENSGT00390000000546	ENSGT00940000154663	ENSGT00940000157601	ENSGT00390000001804	ENSGT00940000154258.a #15	ENSGT00950000182981.a #16	ENSGT00940000157014 #18	ENSGT00390000011067.A #19	ENSGT00940000158853 #20	ENSGT00390000014941 #21	ENSGT00530000063829.C #22	ENSGT00730000111114 #23	ENSGT00940000156917 #24	ENSGT00940000156358 #25	ENSGT00390000013764 #26	ENSGT00940000160950 #27	ENSGT00390000018330 #28	ENSGT00940000159233 #29	ENSGT00390000001159 #30	ENSGT00940000158315 #31	ENSGT01100000263751	ENSGT00390000015972 #32	ENSGT00940000160254 #33	ENSGT00390000018118 #34	ENSGT00400000024545 #35	ENSGT00940000160455 #36
Marmotini_b	ANCESTRAL SPECIES	29	ENSGT00390000013020	ENSGT00940000162922	ENSGT00950000183131.a	ENSGT00940000159472	ENSGT00390000001562	ENSGT00390000000546	ENSGT00940000154663	ENSGT00940000157601	ENSGT00390000001804	ENSGT00940000154258.a #15	ENSGT00950000182981.a #16	ENSGT00940000157014 #18	ENSGT00390000011067.A.o.b #19	ENSGT00940000158853 #20	ENSGT00390000014941 #21	ENSGT00530000063829.C #22	ENSGT00730000111114 #23	ENSGT00940000156917 #24	ENSGT00940000156358 #25	ENSGT00390000013764 #26	ENSGT00940000160950 #27	ENSGT00390000018330 #28	ENSGT00940000159233 #29	ENSGT00390000001159 #30	ENSGT00940000158315 #31	ENSGT01100000263751	ENSGT00390000015972 #32	ENSGT00940000160254 #33	ENSGT00390000018118 #34	ENSGT00400000024545 #35	ENSGT00940000160455 #36
Squirrel	MODERN SPECIES	161	CBFA2T2 (ENSSTOG00000003478)	ACTL10 (ENSSTOG00000000902)	NECAB3 (ENSSTOG00000028643)	E2F1 (ENSSTOG00000002735)	PXMP4 (ENSSTOG00000002748)	ZNF341 (ENSSTOG00000002753)	CHMP4B (ENSSTOG00000005242)	RALY (ENSSTOG00000008810)	EIF2S2 (ENSSTOG00000008821)	ASIP (ENSSTOG00000003501) #15	AHCY (ENSSTOG00000003013) #16	ITCH (ENSSTOG00000014804) #18	ENSSTOG00000014820 #19	MAP1LC3A (ENSSTOG00000006158) #20	PIGU (ENSSTOG00000014830) #21	TP53INP2 (ENSSTOG00000014835) #22	NCOA6 (ENSSTOG00000025050) #23	GGT7 (ENSSTOG00000011584) #24	ACSS2 (ENSSTOG00000011617) #25	GSS (ENSSTOG00000011637) #26	MYH7B (ENSSTOG00000011646) #27	TRPC4AP (ENSSTOG00000011689) #28	EDEM2 (ENSSTOG00000011911) #29	PROCR (ENSSTOG00000011916) #30	ENSSTOG00000032051	MMP24 (ENSSTOG00000013103) #31	EIF6 (ENSSTOG00000013111) #32	FAM83C (ENSSTOG00000019705) #33	UQCC1 (ENSSTOG00000013116) #34	ENSSTOG00000001690 #35	GDF5 (ENSSTOG00000026204) #36
Arctic ground squirrel	MODERN SPECIES	24	C20orf144 (ENSUPAG00010004879)	ACTL10 (ENSUPAG00010004872)	NECAB3 (ENSUPAG00010004839)	E2F1 (ENSUPAG00010004824)	PXMP4 (ENSUPAG00010004822)	ZNF341 (ENSUPAG00010004795)	CHMP4B (ENSUPAG00010004793)	RALY (ENSUPAG00010004731)	EIF2S2 (ENSUPAG00010004723)	ASIP (ENSUPAG00010004712) #15	AHCY (ENSUPAG00010004706) #16	ITCH (ENSUPAG00010004671) #18	DYNLRB1 (ENSUPAG00010004657) #19	MAP1LC3A (ENSUPAG00010004647) #20	PIGU (ENSUPAG00010004614) #21	TP53INP2 (ENSUPAG00010004603) #22	NCOA6 (ENSUPAG00010004584) #23	GGT7 (ENSUPAG00010004573) #24	ACSS2 (ENSUPAG00010004531) #25	GSS (ENSUPAG00010004505) #26	MYH7B (ENSUPAG00010004442) #27	TRPC4AP (ENSUPAG00010004385) #28	EDEM2 (ENSUPAG00010004372) #29	PROCR (ENSUPAG00010004359) #30	MMP24 (ENSUPAG00010004328) #31	ENSUPAG00010004311 #32	FAM83C (ENSUPAG00010004293) #33	UQCC1 (ENSUPAG00010004223) #34	ENSUPAG00010004220 #35	GDF5 (ENSUPAG00010004214) #36	ENSUPAG00010004196
Eurasian red squirrel	MODERN SPECIES	11	ENSSVLG00005003036	CHMP4B (ENSSVLG00005003046)	ENSSVLG00005003066	EIF2S2 (ENSSVLG00005003099)	ENSSVLG00005003129	ENSSVLG00005003145	ENSSVLG00005003157	ASIP (ENSSVLG00005003171) #15	AHCY (ENSSVLG00005003186) #16	ENSSVLG00005003215	ITCH (ENSSVLG00005003277) #18	ENSSVLG00005003373	ENSSVLG00005003389 #19	ENSSVLG00005003409 #20	PIGU (ENSSVLG00005003450) #21	TP53INP2 (ENSSVLG00005003481) #22	NCOA6 (ENSSVLG00005010764) #23	GGT7 (ENSSVLG00005010854) #24	ACSS2 (ENSSVLG00005010902) #25	GSS (ENSSVLG00005011008) #26	MYH7B (ENSSVLG00005011140) #27	TRPC4AP (ENSSVLG00005011658) #28	EDEM2 (ENSSVLG00005011740) #29	PROCR (ENSSVLG00005011920) #30	MMP24 (ENSSVLG00005011948) #31	EIF6 (ENSSVLG00005012066) #32	FAM83C (ENSSVLG00005012115) #33	UQCC1 (ENSSVLG00005012272) #34	ENSSVLG00005012866	GDF5 (ENSSVLG00005012908) #36	ENSSVLG00005012951 #35
Hystricomorpha	ANCESTRAL SPECIES	10	ENSGT00950000183131.a	ENSGT00390000013020	ENSGT00940000162922	ENSGT00940000159472	ENSGT00390000001562	ENSGT00390000000546	ENSGT00940000154663	ENSGT00940000157601	ENSGT00390000001804	ENSGT00940000154258.a #15	ENSGT00950000182981.a #16	ENSGT00940000157014 #18	ENSGT00390000011067.A #19	ENSGT00940000158853 #20	ENSGT00390000014941 #21	ENSGT00530000063829.C #22	ENSGT00730000111114 #23	ENSGT00940000156917 #24	ENSGT00940000156358 #25	ENSGT00390000013764 #26	ENSGT00940000160950 #27	ENSGT00390000018330 #28	ENSGT00940000159233 #29	ENSGT00390000001159 #30	ENSGT00940000158315 #31	ENSGT01100000263751	ENSGT00390000015972 #32	ENSGT00940000160254 #33	ENSGT00390000018118 #34	ENSGT00940000160455 #36	ENSGT00400000024545 #35
Hystricomorpha_a	ANCESTRAL SPECIES	8	ENSGT00950000183131.a	ENSGT00390000013020	ENSGT00940000162922	ENSGT00940000159472	ENSGT00390000001562	ENSGT00390000000546	ENSGT00940000154663	ENSGT00940000157601	ENSGT00390000001804	ENSGT00940000154258.a #15	ENSGT00950000182981.a #16	ENSGT00940000157014 #18	ENSGT00390000011067.A #19	ENSGT00940000158853 #20	ENSGT00390000014941 #21	ENSGT00530000063829.C #22	ENSGT00730000111114 #23	ENSGT00940000156917 #24	ENSGT00940000156358 #25	ENSGT00390000013764 #26	ENSGT00940000160950 #27	ENSGT00390000018330 #28	ENSGT00940000159233 #29	ENSGT00390000001159 #30	ENSGT00940000158315 #31	ENSGT01100000263751	ENSGT00390000015972 #32	ENSGT00940000160254 #33	ENSGT00390000018118 #34	ENSGT00940000160455 #36	ENSGT00400000024545 #35
Guinea pig	MODERN SPECIES	45	CBFA2T2 (ENSCPOG00000001721)	NECAB3 (ENSCPOG00000020859)	ENSCPOG00000022109	E2F1 (ENSCPOG00000001800)	PXMP4 (ENSCPOG00000024804)	ZNF341 (ENSCPOG00000003820)	CHMP4B (ENSCPOG00000035794)	RALY (ENSCPOG00000000309)	EIF2S2 (ENSCPOG00000040226)	ASIP (ENSCPOG00000005139) #15	AHCY (ENSCPOG00000014740) #16	ITCH (ENSCPOG00000013787) #18	DYNLRB1 (ENSCPOG00000013798) #19	PIGU (ENSCPOG00000013806) #21	MAP1LC3A (ENSCPOG00000030093) #20	TP53INP2 (ENSCPOG00000030059) #22	NCOA6 (ENSCPOG00000011318) #23	GGT7 (ENSCPOG00000004187) #24	ACSS2 (ENSCPOG00000004192) #25	ENSCPOG00000039987	GSS (ENSCPOG00000004201) #26	MYH7B (ENSCPOG00000004208) #27	TRPC4AP (ENSCPOG00000003448) #28	EDEM2 (ENSCPOG00000037179) #29	PROCR (ENSCPOG00000005271) #30	MMP24 (ENSCPOG00000004050) #31	EIF6 (ENSCPOG00000013279) #32	FAM83C (ENSCPOG00000027379) #33	UQCC1 (ENSCPOG00000002990) #34	GDF5 (ENSCPOG00000002993) #36	ENSCPOG00000037705 #35
Hystricomorpha_b	ANCESTRAL SPECIES	16	ENSGT00390000013020	ENSGT00940000162922	ENSGT00950000183131.a	ENSGT00940000159472	ENSGT00390000001562	ENSGT00390000000546	ENSGT00940000154663	ENSGT00940000157601	ENSGT00390000001804	ENSGT00940000154258.a #15	ENSGT00950000182981.a #16	ENSGT00940000157014 #18	ENSGT00390000011067.A #19	ENSGT00940000158853 #20	ENSGT00390000014941 #21	ENSGT00530000063829.C #22	ENSGT00730000111114 #23	ENSGT00940000156917 #24	ENSGT00940000156358 #25	ENSGT00390000013764 #26	ENSGT00940000160950 #27	ENSGT00390000018330 #28	ENSGT00940000159233 #29	ENSGT00390000001159 #30	ENSGT00940000158315 #31	ENSGT01100000263751	ENSGT00390000015972 #32	ENSGT00940000160254 #33	ENSGT00390000018118 #34	ENSGT00940000160455 #36	ENSGT00940000161056.l
Long-tailed chinchilla	MODERN SPECIES	129	ENSCLAG00000017072	ACTL10 (ENSCLAG00000018112)	NECAB3 (ENSCLAG00000017054)	E2F1 (ENSCLAG00000017077)	PXMP4 (ENSCLAG00000017245)	ZNF341 (ENSCLAG00000016902)	CHMP4B (ENSCLAG00000017205)	RALY (ENSCLAG00000016899)	ENSCLAG00000017263	ASIP (ENSCLAG00000017188) #15	AHCY (ENSCLAG00000017278) #16	ITCH (ENSCLAG00000016997) #18	DYNLRB1 (ENSCLAG00000016878) #19	MAP1LC3A (ENSCLAG00000016760) #20	PIGU (ENSCLAG00000016489) #21	TP53INP2 (ENSCLAG00000016875) #22	NCOA6 (ENSCLAG00000017340) #23	GGT7 (ENSCLAG00000017317) #24	ACSS2 (ENSCLAG00000016248) #25	GSS (ENSCLAG00000017163) #26	MYH7B (ENSCLAG00000017117) #27	TRPC4AP (ENSCLAG00000017276) #28	EDEM2 (ENSCLAG00000016226) #29	PROCR (ENSCLAG00000016150) #30	ENSCLAG00000015911	MMP24 (ENSCLAG00000017243) #31	FAM83C (ENSCLAG00000016840) #33	UQCC1 (ENSCLAG00000016937) #34	GDF5 (ENSCLAG00000017037) #36	ENSCLAG00000017110	ENSCLAG00000017231
Degu	MODERN SPECIES	78	PXMP4 (ENSODEG00000015173)	ZNF341 (ENSODEG00000013884)	ENSODEG00000012366	ENSODEG00000012831	ENSODEG00000012151	ENSODEG00000012943	ENSODEG00000015189	ENSODEG00000020169	ASIP (ENSODEG00000013289) #15	AHCY (ENSODEG00000013391) #16	ENSODEG00000013834	ITCH (ENSODEG00000012186) #18	ENSODEG00000012899 #19	MAP1LC3A (ENSODEG00000013000) #20	PIGU (ENSODEG00000013242) #21	TP53INP2 (ENSODEG00000014437) #22	NCOA6 (ENSODEG00000013455) #23	GGT7 (ENSODEG00000014267) #24	ENSODEG00000013536 #25	GSS (ENSODEG00000013028) #26	ENSODEG00000013634	ENSODEG00000020172	MYH7B (ENSODEG00000013313) #27	TRPC4AP (ENSODEG00000014176) #28	ENSODEG00000020094	EDEM2 (ENSODEG00000013582) #29	PROCR (ENSODEG00000012672) #30	MMP24 (ENSODEG00000013784) #31	ENSODEG00000013668	ENSODEG00000012965 #32	ENSODEG00000012880 #34
Naked mole-rat female	MODERN SPECIES	6	ENSHGLG00000009659	E2F1 (ENSHGLG00000009301)	ENSHGLG00000041428	PXMP4 (ENSHGLG00000016991)	ZNF341 (ENSHGLG00000013786)	ENSHGLG00000041357	ENSHGLG00000032344	ENSHGLG00000042490	RALY (ENSHGLG00000017779)	ENSHGLG00000031940 #15	AHCY (ENSHGLG00000009751) #16	ITCH (ENSHGLG00000005001) #18	ENSHGLG00000010397 #19	MAP1LC3A (ENSHGLG00000009257) #20	ENSHGLG00000008565 #21	TP53INP2 (ENSHGLG00000033209) #22	ENSHGLG00000020370	ENSHGLG00000005296 #23	GGT7 (ENSHGLG00000007389) #24	ACSS2 (ENSHGLG00000013444) #25	ENSHGLG00000049123	GSS (ENSHGLG00000013619) #26	TRPC4AP (ENSHGLG00000015614) #28	ENSHGLG00000011522	EDEM2 (ENSHGLG00000039402) #29	ENSHGLG00000036931	PROCR (ENSHGLG00000009583) #30	MMP24 (ENSHGLG00000046205) #31	EIF6 (ENSHGLG00000010214) #32	FAM83C (ENSHGLG00000040004) #33	UQCC1 (ENSHGLG00000017446) #34
Rodentia_B	ANCESTRAL SPECIES	13	ENSGT00950000183131.a	ENSGT00390000013020	ENSGT00940000162922	ENSGT00940000159472	ENSGT00390000001562	ENSGT00390000000546	ENSGT00940000154663	ENSGT00940000157601	ENSGT00390000001804	ENSGT00940000154258.a #15	ENSGT00950000182981.a #16	ENSGT00940000157014 #18	ENSGT00390000011067.A #19	ENSGT00940000158853 #20	ENSGT00390000014941 #21	ENSGT00530000063829.C #22	ENSGT00730000111114 #23	ENSGT00940000156917 #24	ENSGT00940000156358 #25	ENSGT00390000013764 #26	ENSGT00940000160950 #27	ENSGT00390000018330 #28	ENSGT00940000159233 #29	ENSGT00390000001159 #30	ENSGT00940000158315 #31	ENSGT01100000263751	ENSGT00390000015972 #32	ENSGT00940000160254 #33	ENSGT00390000018118 #34	ENSGT00940000160455 #36	ENSGT00400000024545 #35
Kangaroo rat	MODERN SPECIES	332	Snta1 (ENSDORG00000029237)	Cbfa2t2 (ENSDORG00000001656)	Necab3 (ENSDORG00000013792)	E2f1 (ENSDORG00000013793)	Pxmp4 (ENSDORG00000030129)	Zfp341 (ENSDORG00000000005)	Chmp4b (ENSDORG00000011539)	Raly (ENSDORG00000013400)	Eif2s2 (ENSDORG00000001920)	a (ENSDORG00000013768) #15	ENSDORG00000012590 #16	Itch (ENSDORG00000027257) #18	Dynlrb1 (ENSDORG00000028607) #19	ENSDORG00000029351	Pigu (ENSDORG00000001715) #21	Trp53inp2 (ENSDORG00000026160) #22	ENSDORG00000016245 #23	Ggt7 (ENSDORG00000008568) #24	Acss2 (ENSDORG00000008570) #25	ENSDORG00000008574 #26	Myh7b (ENSDORG00000008575) #27	Trpc4ap (ENSDORG00000008578) #28	Edem2 (ENSDORG00000006204) #29	Procr (ENSDORG00000001184) #30	Mmp24 (ENSDORG00000001419) #31	Eif6 (ENSDORG00000001423) #32	Fam83c (ENSDORG00000001424) #33	Uqcc1 (ENSDORG00000001426) #34	Gdf5 (ENSDORG00000015642) #36	Gm15557 (ENSDORG00000027886) #35	Cep250 (ENSDORG00000006794)
Myomorpha	ANCESTRAL SPECIES	9	ENSGT00950000183131.a	ENSGT00390000013020	ENSGT00940000162922	ENSGT00940000159472	ENSGT00390000001562	ENSGT00390000000546	ENSGT00940000154663	ENSGT00940000157601	ENSGT00390000001804	ENSGT00940000154258.a #15	ENSGT00950000182981.a #16	ENSGT00940000157014 #18	ENSGT00390000011067.A #19	ENSGT00940000158853 #20	ENSGT00390000014941 #21	ENSGT00530000063829.C #22	ENSGT00730000111114 #23	ENSGT00940000156917 #24	ENSGT00940000156358 #25	ENSGT00390000013764 #26	ENSGT00940000160950 #27	ENSGT00390000018330 #28	ENSGT00940000159233 #29	ENSGT00390000001159 #30	ENSGT00940000158315 #31	ENSGT01100000263751	ENSGT00390000015972 #32	ENSGT00940000160254 #33	ENSGT00390000018118 #34	ENSGT00940000160455 #36	ENSGT00400000024545 #35
Muroidea	ANCESTRAL SPECIES	7	ENSGT00950000183131.a	ENSGT00390000013020	ENSGT00940000162922	ENSGT00940000159472	ENSGT00390000001562	ENSGT00390000000546	ENSGT00940000154663	ENSGT00940000157601	ENSGT00390000001804	ENSGT00940000154258.a #15	ENSGT00950000182981.a #16	ENSGT00940000157014 #18	ENSGT00390000011067.A #19	ENSGT00940000158853 #20	ENSGT00390000014941 #21	ENSGT00530000063829.C #22	ENSGT00730000111114 #23	ENSGT00940000156917 #24	ENSGT00940000156358 #25	ENSGT00390000013764 #26	ENSGT00940000160950 #27	ENSGT00390000018330 #28	ENSGT00940000159233 #29	ENSGT00390000001159 #30	ENSGT00940000158315 #31	ENSGT01100000263751	ENSGT00390000015972 #32	ENSGT00940000160254 #33	ENSGT00390000018118 #34	ENSGT00400000024545 #35	ENSGT00940000160455 #36
Muroidea_A	ANCESTRAL SPECIES	2	ENSGT00950000183131.a	ENSGT00390000013020	ENSGT00940000162922	ENSGT00940000159472	ENSGT00390000001562	ENSGT00390000000546	ENSGT00940000154663	ENSGT00940000157601	ENSGT00390000001804	ENSGT00940000154258.a #15	ENSGT00950000182981.a #16	ENSGT00940000157014 #18	ENSGT00390000011067.A #19	ENSGT00940000158853 #20	ENSGT00390000014941 #21	ENSGT00530000063829.C #22	ENSGT00730000111114 #23	ENSGT00940000156917 #24	ENSGT00940000156358 #25	ENSGT00390000013764 #26	ENSGT00940000160950 #27	ENSGT00390000018330 #28	ENSGT00940000159233 #29	ENSGT00390000001159 #30	ENSGT00940000158315 #31	ENSGT01100000263751	ENSGT00390000015972 #32	ENSGT00940000160254 #33	ENSGT00390000018118 #34	ENSGT00400000024545 #35	ENSGT00940000160455 #36
Cricetidae	ANCESTRAL SPECIES	5	ENSGT00390000013020	ENSGT00940000162922	ENSGT00950000183131.a	ENSGT00940000159472	ENSGT00390000001562	ENSGT00390000000546	ENSGT00940000154663	ENSGT00940000157601	ENSGT00390000001804	ENSGT00940000154258.a #15	ENSGT00950000182981.a #16	ENSGT00940000157014 #18	ENSGT00390000011067.A #19	ENSGT00940000158853 #20	ENSGT00390000014941 #21	ENSGT00530000063829.C #22	ENSGT00730000111114 #23	ENSGT00940000156917 #24	ENSGT00940000156358 #25	ENSGT00390000013764 #26	ENSGT00940000160950 #27	ENSGT00390000018330 #28	ENSGT00940000159233 #29	ENSGT00390000001159 #30	ENSGT00940000158315.d #31	ENSGT01100000263751	ENSGT00390000015972 #32	ENSGT00940000160254 #33	ENSGT00390000018118 #34	ENSGT00940000160455 #36	ENSGT00400000024545 #35
Cricetidae_B	ANCESTRAL SPECIES	4	ENSGT00950000183131.a	ENSGT00390000013020	ENSGT00940000162922	ENSGT00940000159472	ENSGT00390000001562	ENSGT00390000000546	ENSGT00940000154663	ENSGT00940000157601	ENSGT00390000001804	ENSGT00940000154258.a #15	ENSGT00950000182981.a #16	ENSGT00940000157014 #18	ENSGT00390000011067.A #19	ENSGT00940000158853 #20	ENSGT00390000014941 #21	ENSGT00530000063829.C #22	ENSGT00730000111114 #23	ENSGT00940000156917 #24	ENSGT00940000156358 #25	ENSGT00390000013764 #26	ENSGT00940000160950 #27	ENSGT00390000018330 #28	ENSGT00940000159233 #29	ENSGT00390000001159 #30	ENSGT00940000158315.d #31	ENSGT01100000263751	ENSGT00390000015972 #32	ENSGT00940000160254 #33	ENSGT00390000018118 #34	ENSGT00940000160455 #36	ENSGT00400000024545 #35
Northern American deer mouse	MODERN SPECIES	17	Necab3 (ENSPEMG00000011260)	1700003F12Rik (ENSPEMG00000031171)	Actl10 (ENSPEMG00000026578)	E2f1 (ENSPEMG00000018049)	Pxmp4 (ENSPEMG00000023523)	Zfp341 (ENSPEMG00000022506)	Chmp4b (ENSPEMG00000021658)	Raly (ENSPEMG00000021466)	Eif2s2 (ENSPEMG00000023172)	a (ENSPEMG00000023599) #15	ENSPEMG00000024071 #16	Itch (ENSPEMG00000021623) #18	Dynlrb1 (ENSPEMG00000001641) #19	Map1lc3a (ENSPEMG00000001010) #20	Pigu (ENSPEMG00000001185) #21	Trp53inp2 (ENSPEMG00000029672) #22	Ncoa6 (ENSPEMG00000022222) #23	Ggt7 (ENSPEMG00000021854) #24	Acss2 (ENSPEMG00000008637) #25	Gss (ENSPEMG00000021810) #26	Myh7b (ENSPEMG00000024179) #27	Trpc4ap (ENSPEMG00000021450) #28	Edem2 (ENSPEMG00000021778) #29	Procr (ENSPEMG00000022438) #30	Mmp24 (ENSPEMG00000022693) #31	BC029722 (ENSPEMG00000004769)	Eif6 (ENSPEMG00000023020) #32	Fam83c (ENSPEMG00000021622) #33	Uqcc1 (ENSPEMG00000022290) #34	Gdf5 (ENSPEMG00000015381) #36	Gm15557 (ENSPEMG00000002798) #35
Prairie vole	MODERN SPECIES	357	1700003F12Rik (ENSMOCG00000019597)	Necab3 (ENSMOCG00000000497)	E2f1 (ENSMOCG00000012464)	Pxmp4 (ENSMOCG00000003745)	Zfp341 (ENSMOCG00000004075)	Chmp4b (ENSMOCG00000022208)	ENSMOCG00000017228	Raly (ENSMOCG00000009450)	Eif2s2 (ENSMOCG00000012809)	a (ENSMOCG00000006735) #15	ENSMOCG00000021599 #16	Itch (ENSMOCG00000015148) #18	Dynlrb1 (ENSMOCG00000001553) #19	Map1lc3a (ENSMOCG00000022232) #20	Pigu (ENSMOCG00000012991) #21	Trp53inp2 (ENSMOCG00000000724) #22	ENSMOCG00000000295 #23	Ggt7 (ENSMOCG00000012611) #24	Acss2 (ENSMOCG00000001936) #25	Gss (ENSMOCG00000015352) #26	Myh7b (ENSMOCG00000021150) #27	Trpc4ap (ENSMOCG00000006945) #28	Edem2 (ENSMOCG00000021913) #29	ENSMOCG00000011547	Procr (ENSMOCG00000007987) #30	Mmp24 (ENSMOCG00000003265) #31	Eif6 (ENSMOCG00000020625) #32	Fam83c (ENSMOCG00000016691) #33	Uqcc1 (ENSMOCG00000021669) #34	Gm15557 (ENSMOCG00000008777) #35	Gdf5 (ENSMOCG00000013925) #36
Cricetinae	ANCESTRAL SPECIES	1	ENSGT00390000013020	ENSGT00940000162922	ENSGT00950000183131.a	ENSGT00940000159472	ENSGT00390000001562	ENSGT00390000000546	ENSGT00940000154663	ENSGT00940000157601	ENSGT00390000001804.y.b	ENSGT00940000154258.a #15	ENSGT00950000182981.a #16	ENSGT00940000157014 #18	ENSGT00390000011067.A #19	ENSGT00940000158853 #20	ENSGT00390000014941 #21	ENSGT00530000063829.C #22	ENSGT00730000111114 #23	ENSGT00940000156917 #24	ENSGT00940000156358 #25	ENSGT00390000013764 #26	ENSGT00940000160950 #27	ENSGT00390000018330 #28	ENSGT00940000159233 #29	ENSGT00390000001159 #30	ENSGT00940000158315.d #31	ENSGT01100000263751	ENSGT00390000015972 #32	ENSGT00940000160254 #33	ENSGT00390000018118 #34	ENSGT00940000160455 #36	ENSGT00400000024545 #35
Golden Hamster	MODERN SPECIES	791	Snta1 (ENSMAUG00000013984)	Cbfa2t2 (ENSMAUG00000001412)	1700003F12Rik (ENSMAUG00000022072)	Necab3 (ENSMAUG00000015672)	E2f1 (ENSMAUG00000000913)	Pxmp4 (ENSMAUG00000015504)	Zfp341 (ENSMAUG00000011481)	Chmp4b (ENSMAUG00000020158)	Raly (ENSMAUG00000005739)	ENSMAUG00000009771	a (ENSMAUG00000021663) #15	ENSMAUG00000006591 #16	Itch (ENSMAUG00000001009) #18	Dynlrb1 (ENSMAUG00000019405) #19	Pigu (ENSMAUG00000012275) #21	Trp53inp2 (ENSMAUG00000004915) #22	ENSMAUG00000020422 #23	ENSMAUG00000013174 #24	Acss2 (ENSMAUG00000007803) #25	Gss (ENSMAUG00000018706) #26	Myh7b (ENSMAUG00000012385) #27	Trpc4ap (ENSMAUG00000009774) #28	Edem2 (ENSMAUG00000011237) #29	Procr (ENSMAUG00000015719) #30	Mmp24 (ENSMAUG00000016379) #31	Eif6 (ENSMAUG00000019381) #32	Fam83c (ENSMAUG00000011286) #33	ENSMAUG00000008637	Uqcc1 (ENSMAUG00000019025) #34	Gm15557 (ENSMAUG00000006576) #35	Gdf5 (ENSMAUG00000011269) #36
Chinese hamster chok1gshd	MODERN SPECIES	188	Actl10 (ENSCGRG00001006945)	Necab3 (ENSCGRG00001013760)	E2f1 (ENSCGRG00001001729)	Pxmp4 (ENSCGRG00001010342)	Zfp341 (ENSCGRG00001014101)	Chmp4b (ENSCGRG00001000652)	Raly (ENSCGRG00001014652)	ENSCGRG00001001614	ENSCGRG00001004778	a (ENSCGRG00001021768) #15	ENSCGRG00001012673 #16	Itch (ENSCGRG00001020207) #18	Dynlrb1 (ENSCGRG00001013277) #19	Map1lc3a (ENSCGRG00001005970) #20	Pigu (ENSCGRG00001013977) #21	Trp53inp2 (ENSCGRG00001018606) #22	Ncoa6 (ENSCGRG00001020420) #23	Ggt7 (ENSCGRG00001014701) #24	Acss2 (ENSCGRG00001022462) #25	Gss (ENSCGRG00001023241) #26	Myh7b (ENSCGRG00001023442) #27	Trpc4ap (ENSCGRG00001024075) #28	Edem2 (ENSCGRG00001022570) #29	Procr (ENSCGRG00001021446) #30
Murinae	ANCESTRAL SPECIES	1	ENSGT00950000183131.a	ENSGT00390000013020	ENSGT00940000162922	ENSGT00940000159472	ENSGT00390000001562	ENSGT00390000000546	ENSGT00940000154663	ENSGT00940000157601	ENSGT00390000001804	ENSGT00940000154258.a #15	ENSGT00950000182981.a #16	ENSGT00940000157014 #18	ENSGT00390000011067.A #19	ENSGT00940000158853 #20	ENSGT00390000014941 #21	ENSGT00530000063829.C #22	ENSGT00730000111114 #23	ENSGT00940000156917 #24	ENSGT00940000156358 #25	ENSGT00390000013764 #26	ENSGT00940000160950 #27	ENSGT00390000018330 #28	ENSGT00940000159233 #29	ENSGT00390000001159 #30	ENSGT00940000158315 #31	ENSGT01100000263751	ENSGT00390000015972 #32	ENSGT00940000160254 #33	ENSGT00390000018118 #34	ENSGT00400000024545 #35	ENSGT00940000160455 #36
Mus	ANCESTRAL SPECIES	1	ENSGT00390000013020	ENSGT00940000162922	ENSGT00940000159472	ENSGT00390000001562	ENSGT00860000136314	ENSGT00390000000546	ENSGT00940000154663	ENSGT00940000157601	ENSGT00390000001804	ENSGT00940000154258.a #15	ENSGT00950000182981.a #16	ENSGT00940000157014 #18	ENSGT00390000011067.A #19	ENSGT00940000158853 #20	ENSGT00390000014941 #21	ENSGT00530000063829.C #22	ENSGT00730000111114 #23	ENSGT00940000156917 #24	ENSGT00940000156358 #25	ENSGT00390000013764 #26	ENSGT00940000160950 #27	ENSGT00390000018330 #28	ENSGT00940000159233 #29	ENSGT00390000001159 #30	ENSGT00940000158315 #31	ENSGT01100000263751	ENSGT00390000015972 #32	ENSGT00940000160254 #33	ENSGT00390000018118 #34	ENSGT00400000024545 #35	ENSGT00940000160455 #36
Mus_A	ANCESTRAL SPECIES		ENSGT00390000013020	ENSGT00940000162922	ENSGT00940000159472	ENSGT00390000001562	ENSGT00860000136314	ENSGT00390000000546	ENSGT00940000154663	ENSGT00940000157601	ENSGT00390000001804	ENSGT00940000154258.a #15	ENSGT00950000182981.a #16	ENSGT00940000157014 #18	ENSGT00390000011067.A #19	ENSGT00940000158853 #20	ENSGT00390000014941 #21	ENSGT00530000063829.C #22	ENSGT00730000111114 #23	ENSGT00940000156917 #24	ENSGT00940000156358 #25	ENSGT00390000013764 #26	ENSGT00940000160950 #27	ENSGT00390000018330 #28	ENSGT00940000159233 #29	ENSGT00390000001159 #30	ENSGT00940000158315 #31	ENSGT01100000263751	ENSGT00390000015972.e #32	ENSGT00940000160254 #33	ENSGT00390000018118 #34	ENSGT00400000024545 #35	ENSGT00940000160455 #36
Mus_B	ANCESTRAL SPECIES	1	ENSGT00390000013020	ENSGT00940000162922	ENSGT00940000159472	ENSGT00390000001562	ENSGT00860000136314	ENSGT00390000000546	ENSGT00940000154663	ENSGT00940000157601	ENSGT00390000001804	ENSGT00940000154258.a #15	ENSGT00950000182981.a #16	ENSGT00940000157014 #18	ENSGT00390000011067.A #19	ENSGT00940000158853 #20	ENSGT00390000014941 #21	ENSGT00530000063829.C #22	ENSGT00730000111114 #23	ENSGT00940000156917 #24	ENSGT00940000156358 #25	ENSGT00390000013764 #26	ENSGT00940000160950 #27	ENSGT00390000018330 #28	ENSGT00940000159233 #29	ENSGT00390000001159 #30	ENSGT00940000158315 #31	ENSGT01100000263751	ENSGT00390000015972.e #32	ENSGT00940000160254 #33	ENSGT00390000018118 #34	ENSGT00400000024545 #35	ENSGT00940000160455 #36
Mouse	MODERN SPECIES	11	Necab3 (ENSMUSG00000027489)	1700003F12Rik (ENSMUSG00000038523)	Actl10 (ENSMUSG00000078129)	E2f1 (ENSMUSG00000027490)	Pxmp4 (ENSMUSG00000000876)	Zfp341 (ENSMUSG00000059842)	Chmp4b (ENSMUSG00000038467)	Raly (ENSMUSG00000027593)	a (ENSMUSG00000027596) #15	Eif2s2 (ENSMUSG00000074656)	Ahcy (ENSMUSG00000027597) #16	Itch (ENSMUSG00000027598) #18	Dynlrb1 (ENSMUSG00000047459) #19	Map1lc3a (ENSMUSG00000027602) #20	Pigu (ENSMUSG00000038383) #21	Trp53inp2 (ENSMUSG00000038375) #22	Ncoa6 (ENSMUSG00000038369) #23	Ggt7 (ENSMUSG00000027603) #24	Acss2 (ENSMUSG00000027605) #25	Gss (ENSMUSG00000027610) #26	Myh7b (ENSMUSG00000074652) #27	Trpc4ap (ENSMUSG00000038324) #28	Edem2 (ENSMUSG00000038312) #29	Procr (ENSMUSG00000027611) #30	Mmp24 (ENSMUSG00000027612) #31	BC029722 (ENSMUSG00000074649)	Eif6 (ENSMUSG00000027613) #32	Fam83c (ENSMUSG00000074647) #33	Uqcc1 (ENSMUSG00000005882) #34	Gm15557 (ENSMUSG00000078972) #35	Gdf5 (ENSMUSG00000038259) #36
Mus_C	ANCESTRAL SPECIES		ENSGT00390000013020	ENSGT00940000162922	ENSGT00940000159472	ENSGT00390000001562	ENSGT00860000136314	ENSGT00390000000546	ENSGT00940000154663	ENSGT00940000157601	ENSGT00390000001804	ENSGT00940000154258.a #15	ENSGT00950000182981.a #16	ENSGT00940000157014 #18	ENSGT00390000011067.A #19	ENSGT00940000158853 #20	ENSGT00390000014941 #21	ENSGT00530000063829.C #22	ENSGT00730000111114 #23	ENSGT00940000156917 #24	ENSGT00940000156358 #25	ENSGT00390000013764 #26	ENSGT00940000160950 #27	ENSGT00390000018330 #28	ENSGT00940000159233 #29	ENSGT00390000001159 #30	ENSGT00940000158315 #31	ENSGT01100000263751	ENSGT00390000015972.e #32	ENSGT00940000160254 #33	ENSGT00390000018118 #34	ENSGT00940000160455 #36	ENSGT00400000024545 #35
Steppe mouse	MODERN SPECIES	27	Actl10 (ENSMSIG00000001387)	E2f1 (ENSMSIG00000001395)	Pxmp4 (ENSMSIG00000001438)	ENSMSIG00000001473	Zfp341 (ENSMSIG00000001480)	Chmp4b (ENSMSIG00000001595)	ENSMSIG00000001612	Raly (ENSMSIG00000001654)	Eif2s2 (ENSMSIG00000001803)	a (ENSMSIG00000001870) #15	ENSMSIG00000001894 #16	Itch (ENSMSIG00000001955) #18	Dynlrb1 (ENSMSIG00000002016) #19	Map1lc3a (ENSMSIG00000002049) #20	Pigu (ENSMSIG00000002063) #21	Trp53inp2 (ENSMSIG00000002241) #22	Ncoa6 (ENSMSIG00000002291) #23	Ggt7 (ENSMSIG00000002452) #24	Acss2 (ENSMSIG00000002548) #25	Gss (ENSMSIG00000002823) #26	Myh7b (ENSMSIG00000002871) #27	Trpc4ap (ENSMSIG00000003047) #28	Edem2 (ENSMSIG00000003199) #29	ENSMSIG00000003235	Procr (ENSMSIG00000003240) #30	Mmp24 (ENSMSIG00000003274) #31	BC029722 (ENSMSIG00000003309)	Eif6 (ENSMSIG00000003329) #32	Fam83c (ENSMSIG00000003341) #33	Uqcc1 (ENSMSIG00000003378) #34	Gdf5 (ENSMSIG00000003800) #36
spretus	MODERN SPECIES	11	Actl10 (MGP_SPRETEiJ_G0025434)	E2f1 (MGP_SPRETEiJ_G0025435)	Pxmp4 (MGP_SPRETEiJ_G0025436)	MGP_SPRETEiJ_G0025437	MGP_SPRETEiJ_G0025438	Chmp4b (MGP_SPRETEiJ_G0025439)	MGP_SPRETEiJ_G0025440	Raly (MGP_SPRETEiJ_G0025441)	a (MGP_SPRETEiJ_G0025442) #15	Eif2s2 (MGP_SPRETEiJ_G0025443)	MGP_SPRETEiJ_G0025444 #16	Itch (MGP_SPRETEiJ_G0025445) #18	Dynlrb1 (MGP_SPRETEiJ_G0025446) #19	Map1lc3a (MGP_SPRETEiJ_G0025447) #20	Pigu (MGP_SPRETEiJ_G0025448) #21	Trp53inp2 (MGP_SPRETEiJ_G0025449) #22	Ncoa6 (MGP_SPRETEiJ_G0025450) #23	Ggt7 (MGP_SPRETEiJ_G0025451) #24	Acss2 (MGP_SPRETEiJ_G0025452) #25	Gss (MGP_SPRETEiJ_G0025453) #26	Myh7b (MGP_SPRETEiJ_G0025454) #27	Trpc4ap (MGP_SPRETEiJ_G0025455) #28	Edem2 (MGP_SPRETEiJ_G0025456) #29	MGP_SPRETEiJ_G0025457	Procr (MGP_SPRETEiJ_G0025458) #30	Mmp24 (MGP_SPRETEiJ_G0025459) #31	BC029722 (MGP_SPRETEiJ_G0025460)	Eif6 (MGP_SPRETEiJ_G0025461) #32	Fam83c (MGP_SPRETEiJ_G0025462) #33	Uqcc1 (MGP_SPRETEiJ_G0025463) #34	Gm15557 (MGP_SPRETEiJ_G0025464) #35
Ryukyu mouse	MODERN SPECIES	11	Actl10 (MGP_CAROLIEiJ_G0024512)	E2f1 (MGP_CAROLIEiJ_G0024513)	Pxmp4 (MGP_CAROLIEiJ_G0024514)	MGP_CAROLIEiJ_G0024515	Zfp341 (MGP_CAROLIEiJ_G0024516)	Chmp4b (MGP_CAROLIEiJ_G0024517)	MGP_CAROLIEiJ_G0024518	Raly (MGP_CAROLIEiJ_G0024519)	a (MGP_CAROLIEiJ_G0024520) #15	Eif2s2 (MGP_CAROLIEiJ_G0024521)	MGP_CAROLIEiJ_G0024522 #16	Itch (MGP_CAROLIEiJ_G0024523) #18	Dynlrb1 (MGP_CAROLIEiJ_G0024524) #19	Map1lc3a (MGP_CAROLIEiJ_G0024525) #20	Pigu (MGP_CAROLIEiJ_G0024526) #21	Trp53inp2 (MGP_CAROLIEiJ_G0024527) #22	Ncoa6 (MGP_CAROLIEiJ_G0024528) #23	Ggt7 (MGP_CAROLIEiJ_G0024529) #24	Acss2 (MGP_CAROLIEiJ_G0024530) #25	Gss (MGP_CAROLIEiJ_G0024531) #26	Myh7b (MGP_CAROLIEiJ_G0024532) #27	Trpc4ap (MGP_CAROLIEiJ_G0024533) #28	Edem2 (MGP_CAROLIEiJ_G0024534) #29	MGP_CAROLIEiJ_G0024535	Procr (MGP_CAROLIEiJ_G0024536) #30	Mmp24 (MGP_CAROLIEiJ_G0024537) #31	BC029722 (MGP_CAROLIEiJ_G0024538)	Eif6 (MGP_CAROLIEiJ_G0024539) #32	MGP_CAROLIEiJ_G0024540 #33	Uqcc1 (MGP_CAROLIEiJ_G0024541) #34	Gm15557 (MGP_CAROLIEiJ_G0024542) #35
Shrew mouse	MODERN SPECIES	16	E2f1 (MGP_PahariEiJ_G0025957)	Pxmp4 (MGP_PahariEiJ_G0025958)	MGP_PahariEiJ_G0025959	Zfp341 (MGP_PahariEiJ_G0025960)	Chmp4b (MGP_PahariEiJ_G0025961)	MGP_PahariEiJ_G0025962	Raly (MGP_PahariEiJ_G0025963)	a (MGP_PahariEiJ_G0025964) #15	Eif2s2 (MGP_PahariEiJ_G0025965)	MGP_PahariEiJ_G0025966	MGP_PahariEiJ_G0025967 #16	Itch (MGP_PahariEiJ_G0025968) #18	Dynlrb1 (MGP_PahariEiJ_G0025969) #19	Map1lc3a (MGP_PahariEiJ_G0025970) #20	Pigu (MGP_PahariEiJ_G0025971) #21	Trp53inp2 (MGP_PahariEiJ_G0025972) #22	Ncoa6 (MGP_PahariEiJ_G0025973) #23	Ggt7 (MGP_PahariEiJ_G0025974) #24	Acss2 (MGP_PahariEiJ_G0025975) #25	Gss (MGP_PahariEiJ_G0025976) #26	Myh7b (MGP_PahariEiJ_G0025977) #27	Trpc4ap (MGP_PahariEiJ_G0025978) #28	Edem2 (MGP_PahariEiJ_G0025979) #29	MGP_PahariEiJ_G0025980	Procr (MGP_PahariEiJ_G0025981) #30	Mmp24 (MGP_PahariEiJ_G0025982) #31	BC029722 (MGP_PahariEiJ_G0025983)	Eif6 (MGP_PahariEiJ_G0025984) #32	Fam83c (MGP_PahariEiJ_G0025985) #33	Uqcc1 (MGP_PahariEiJ_G0025986) #34	Gm15557 (MGP_PahariEiJ_G0025987) #35
Rat	MODERN SPECIES	13	Actl10 (ENSRNOG00000036864)	Pxmp4 (ENSRNOG00000016975)	Zfp341 (ENSRNOG00000017086)	ENSRNOG00000063087	AABR07054368.1 (ENSRNOG00000029996)	Chmp4b (ENSRNOG00000046585)	LOC690597 (ENSRNOG00000055182)	Raly (ENSRNOG00000017405)	Eif2s2 (ENSRNOG00000017447)	Asip (ENSRNOG00000017701) #15	Ahcy (ENSRNOG00000017777) #16	Itch (ENSRNOG00000059043) #18	Dynlrb1 (ENSRNOG00000025715) #19	Map1lc3a (ENSRNOG00000025443) #20	Pigu (ENSRNOG00000025181) #21	Tp53inp2 (ENSRNOG00000018225) #22	Ncoa6 (ENSRNOG00000018288) #23	Ggt7 (ENSRNOG00000018441) #24	Acss2 (ENSRNOG00000018755) #25	Gss (ENSRNOG00000018964) #26	Myh7b (ENSRNOG00000018997) #27	Trpc4ap (ENSRNOG00000019152) #28	Edem2 (ENSRNOG00000019299) #29	Procr (ENSRNOG00000019330) #30	Mmp24 (ENSRNOG00000047028) #31	Eif6 (ENSRNOG00000049497) #32	Fam83c (ENSRNOG00000046772) #33	Uqcc1 (ENSRNOG00000048309) #34	Gdf5 (ENSRNOG00000050123) #36	Cep250 (ENSRNOG00000019340)	LOC102550306 (ENSRNOG00000047596)
Upper Galilee mountains blind mole rat	MODERN SPECIES	1409													Dynlrb1 (ENSNGAG00000014248) #19	Map1lc3a (ENSNGAG00000019254) #20	Pigu (ENSNGAG00000002924) #21	Trp53inp2 (ENSNGAG00000018941) #22	ENSNGAG00000007923 #23	ENSNGAG00000022992	ENSNGAG00000001854 #23	Ggt7 (ENSNGAG00000020960) #24	Acss2 (ENSNGAG00000019593) #25	Gss (ENSNGAG00000003898) #26	Myh7b (ENSNGAG00000022693) #27	Trpc4ap (ENSNGAG00000019616) #28
Lesser Egyptian jerboa	MODERN SPECIES	149	Necab3 (ENSJJAG00000020960)	1700003F12Rik (ENSJJAG00000010475)	E2f1 (ENSJJAG00000022378)	Pxmp4 (ENSJJAG00000016829)	Zfp341 (ENSJJAG00000020905)	Chmp4b (ENSJJAG00000013547)	Raly (ENSJJAG00000008473)	Eif2s2 (ENSJJAG00000014081)	ENSJJAG00000001144	a (ENSJJAG00000018926) #15	ENSJJAG00000022935 #16	Itch (ENSJJAG00000000211) #18	ENSJJAG00000005483 #19	Map1lc3a (ENSJJAG00000010977) #20	Pigu (ENSJJAG00000021314) #21	Trp53inp2 (ENSJJAG00000019307) #22	Ggt7 (ENSJJAG00000016677) #24	Acss2 (ENSJJAG00000014518) #25	Gss (ENSJJAG00000019451) #26	Myh7b (ENSJJAG00000011461) #27	Edem2 (ENSJJAG00000006740) #29	Procr (ENSJJAG00000011230) #30	Mmp24 (ENSJJAG00000018735) #31	Eif6 (ENSJJAG00000006310) #32	Fam83c (ENSJJAG00000013689) #33	Uqcc1 (ENSJJAG00000023965) #34	Gdf5 (ENSJJAG00000023147) #36	Gm15557 (ENSJJAG00000003923) #35	Cep250 (ENSJJAG00000013081)	Ergic3 (ENSJJAG00000019873)	Spag4 (ENSJJAG00000006639)
Laurasiatheria	ANCESTRAL SPECIES	17	ENSGT00950000183131.a	ENSGT00390000013020	ENSGT00940000162922	ENSGT00940000159472	ENSGT00390000001562	ENSGT00390000000546	ENSGT00940000154663	ENSGT00940000157601	ENSGT00390000001804	ENSGT00940000154258.a #15	ENSGT00950000182981.a #16	ENSGT00940000157014 #18	ENSGT00390000011067.A #19	ENSGT00940000158853 #20	ENSGT00390000014941 #21	ENSGT00530000063829.C #22	ENSGT00730000111114 #23	ENSGT00940000156917 #24	ENSGT00940000156358 #25	ENSGT00390000013764 #26	ENSGT00940000160950 #27	ENSGT00390000018330 #28	ENSGT00940000159233 #29	ENSGT00390000001159 #30	ENSGT00940000158315 #31	ENSGT01100000263751	ENSGT00390000015972 #32	ENSGT00940000160254 #33	ENSGT00390000018118 #34	ENSGT00940000160455 #36	ENSGT00400000024545 #35
Eulipotyphla	ANCESTRAL SPECIES	1465																ENSGT00530000063829.C #22	ENSGT00730000111114 #23
Hedgehog	MODERN SPECIES	8689																TP53INP2 (ENSEEUG00000007348) #22
Common shrew	MODERN SPECIES	4726																TP53INP2 (ENSSARG00000006545) #22	NCOA6 (ENSSARG00000006590) #23
Laurasiatheria_a	ANCESTRAL SPECIES	18	ENSGT00950000183131.a	ENSGT00390000013020	ENSGT00940000162922	ENSGT00940000159472	ENSGT00390000001562	ENSGT00390000000546	ENSGT00940000154663	ENSGT00940000157601	ENSGT00390000001804	ENSGT00940000154258.a #15	ENSGT00950000182981.a #16	ENSGT00940000157014 #18	ENSGT00390000011067.A #19	ENSGT00940000158853 #20	ENSGT00390000014941 #21	ENSGT00530000063829.C #22	ENSGT00730000111114 #23	ENSGT00940000156917 #24	ENSGT00940000156358 #25	ENSGT00390000013764 #26	ENSGT00940000160950 #27	ENSGT00390000018330 #28	ENSGT00940000159233 #29	ENSGT00390000001159 #30	ENSGT00940000158315 #31	ENSGT01100000263751	ENSGT00390000015972 #32	ENSGT00940000160254 #33	ENSGT00390000018118 #34	ENSGT00940000160455 #36	ENSGT00400000024545 #35
Laurasiatheria_b	ANCESTRAL SPECIES	19	ENSGT00950000183131.a	ENSGT00390000013020	ENSGT00940000162922	ENSGT00940000159472	ENSGT00390000001562	ENSGT00390000000546	ENSGT00940000154663	ENSGT00940000157601	ENSGT00390000001804	ENSGT00940000154258.a #15	ENSGT00950000182981.a #16	ENSGT00940000157014 #18	ENSGT00390000011067.A #19	ENSGT00940000158853 #20	ENSGT00390000014941 #21	ENSGT00530000063829.C #22	ENSGT00730000111114 #23	ENSGT00940000156917 #24	ENSGT00940000156358 #25	ENSGT00390000013764 #26	ENSGT00940000160950 #27	ENSGT00390000018330 #28	ENSGT00940000159233 #29	ENSGT00390000001159 #30	ENSGT00940000158315 #31	ENSGT01100000263751	ENSGT00390000015972 #32	ENSGT00940000160254 #33	ENSGT00390000018118 #34	ENSGT00940000160455 #36	ENSGT00400000024545 #35
Carnivora	ANCESTRAL SPECIES	20	ENSGT00950000183131.a	ENSGT00390000013020	ENSGT00940000162922	ENSGT00940000159472	ENSGT00390000001562	ENSGT00390000000546	ENSGT00940000154663	ENSGT00940000157601	ENSGT00390000001804	ENSGT00940000154258.a #15	ENSGT00950000182981.a #16	ENSGT00940000157014 #18	ENSGT00390000011067.A #19	ENSGT00940000158853 #20	ENSGT00390000014941 #21	ENSGT00530000063829.C #22	ENSGT00730000111114 #23	ENSGT00940000156917 #24	ENSGT00940000156358 #25	ENSGT00390000013764 #26	ENSGT00940000160950 #27	ENSGT00390000018330 #28	ENSGT00940000159233 #29	ENSGT00390000001159 #30	ENSGT00940000158315 #31	ENSGT01100000263751	ENSGT00390000015972 #32	ENSGT00940000160254 #33	ENSGT00390000018118 #34	ENSGT00940000160455 #36	ENSGT00400000024545 #35
Felidae	ANCESTRAL SPECIES	3	ENSGT00950000183131.a	ENSGT00390000013020	ENSGT00940000162922	ENSGT00940000159472	ENSGT00390000001562	ENSGT00390000000546	ENSGT00940000154663	ENSGT00940000157601	ENSGT00390000001804	ENSGT00940000154258.a #15	ENSGT00950000182981.a #16	ENSGT00940000157014.d #18	ENSGT00390000011067.A #19	ENSGT00940000158853 #20	ENSGT00390000014941 #21	ENSGT00530000063829.C #22	ENSGT00730000111114 #23	ENSGT00940000156917 #24	ENSGT00940000156358 #25	ENSGT00390000013764 #26	ENSGT00940000160950 #27	ENSGT00390000018330 #28	ENSGT00940000159233 #29	ENSGT00390000001159 #30	ENSGT00940000158315 #31	ENSGT01100000263751	ENSGT00390000015972 #32	ENSGT00940000160254 #33	ENSGT00390000018118 #34	ENSGT00940000160455 #36	ENSGT00400000024545 #35
Panthera	ANCESTRAL SPECIES	2	ENSGT00950000183131.a	ENSGT00390000013020	ENSGT00940000162922	ENSGT00940000159472	ENSGT00390000001562	ENSGT00390000000546	ENSGT00940000154663	ENSGT00940000157601	ENSGT00390000001804	ENSGT00940000154258.a #15	ENSGT00950000182981.a #16	ENSGT00940000157014.d #18	ENSGT00390000011067.A #19	ENSGT00940000158853 #20	ENSGT00390000014941 #21	ENSGT00530000063829.C #22	ENSGT00730000111114 #23	ENSGT00940000156917 #24	ENSGT00940000156358 #25	ENSGT00390000013764 #26	ENSGT00940000160950 #27	ENSGT00390000018330 #28	ENSGT00940000159233 #29	ENSGT00390000001159 #30	ENSGT00940000158315 #31	ENSGT01100000263751	ENSGT00390000015972 #32	ENSGT00940000160254 #33	ENSGT00390000018118 #34	ENSGT00940000160455 #36	ENSGT00400000024545 #35
Panthera_a	ANCESTRAL SPECIES	1	ENSGT00950000183131.a	ENSGT00390000013020	ENSGT00940000162922	ENSGT00940000159472	ENSGT00390000001562	ENSGT00390000000546	ENSGT00940000154663	ENSGT00940000157601	ENSGT00390000001804	ENSGT00940000154258.a #15	ENSGT00950000182981.a #16	ENSGT00940000157014.d #18	ENSGT00390000011067.A #19	ENSGT00940000158853 #20	ENSGT00390000014941 #21	ENSGT00530000063829.C #22	ENSGT00730000111114 #23	ENSGT00940000156917 #24	ENSGT00940000156358 #25	ENSGT00390000013764 #26	ENSGT00940000160950 #27	ENSGT00390000018330 #28	ENSGT00940000159233 #29	ENSGT00390000001159 #30	ENSGT00940000158315 #31	ENSGT01100000263751	ENSGT00390000015972 #32	ENSGT00940000160254 #33	ENSGT00390000018118 #34	ENSGT00940000160455 #36	ENSGT00400000024545 #35
lion	MODERN SPECIES	3	NECAB3 (ENSPLOG00000016443)	ENSPLOG00000016536	ACTL10 (ENSPLOG00000016575)	E2F1 (ENSPLOG00000016585)	PXMP4 (ENSPLOG00000016650)	ZNF341 (ENSPLOG00000016700)	CHMP4B (ENSPLOG00000016734)	RALY (ENSPLOG00000016811)	EIF2S2 (ENSPLOG00000016881)	ASIP (ENSPLOG00000016919) #15	ENSPLOG00000016963 #16	ITCH (ENSPLOG00000017081) #18	DYNLRB1 (ENSPLOG00000017257) #19	MAP1LC3A (ENSPLOG00000017340) #20	PIGU (ENSPLOG00000017369) #21	TP53INP2 (ENSPLOG00000017445) #22	NCOA6 (ENSPLOG00000017497) #23	GGT7 (ENSPLOG00000017579) #24	ACSS2 (ENSPLOG00000017693) #25	GSS (ENSPLOG00000017776) #26	MYH7B (ENSPLOG00000018114) #27	TRPC4AP (ENSPLOG00000018847) #28	EDEM2 (ENSPLOG00000018904) #29	PROCR (ENSPLOG00000018994) #30	MMP24 (ENSPLOG00000019035) #31	EIF6 (ENSPLOG00000019100) #32	FAM83C (ENSPLOG00000019126) #33	UQCC1 (ENSPLOG00000019226) #34	GDF5 (ENSPLOG00000019643) #36	ENSPLOG00000019664 #35	CEP250 (ENSPLOG00000019690)
leopard	MODERN SPECIES	32	CBFA2T2 (ENSPPRG00000009192)	ACTL10 (ENSPPRG00000015321)	NECAB3 (ENSPPRG00000011300)	E2F1 (ENSPPRG00000011405)	PXMP4 (ENSPPRG00000011904)	ZNF341 (ENSPPRG00000013033)	CHMP4B (ENSPPRG00000013846)	RALY (ENSPPRG00000014593)	EIF2S2 (ENSPPRG00000015102)	ASIP (ENSPPRG00000015476) #15	AHCY (ENSPPRG00000015988) #16	ITCH (ENSPPRG00000017149) #18	DYNLRB1 (ENSPPRG00000018205) #19	MAP1LC3A (ENSPPRG00000020454) #20	PIGU (ENSPPRG00000022523) #21	TP53INP2 (ENSPPRG00000024794) #22	NCOA6 (ENSPPRG00000024663) #23	GGT7 (ENSPPRG00000023696) #24	ACSS2 (ENSPPRG00000023485) #25	GSS (ENSPPRG00000022871) #26	TRPC4AP (ENSPPRG00000004601) #28	EDEM2 (ENSPPRG00000005168) #29	PROCR (ENSPPRG00000005506) #30	MMP24 (ENSPPRG00000005658) #31	ENSPPRG00000015802	EIF6 (ENSPPRG00000006006) #32	FAM83C (ENSPPRG00000006244) #33	UQCC1 (ENSPPRG00000008852) #34	GDF5 (ENSPPRG00000009262) #36	CEP250 (ENSPPRG00000010295)	C20orf173 (ENSPPRG00000010825)
Tiger	MODERN SPECIES	25	CBFA2T2 (ENSPTIG00000020570)	NECAB3 (ENSPTIG00000009683)	ACTL10 (ENSPTIG00000001807)	E2F1 (ENSPTIG00000016955)	PXMP4 (ENSPTIG00000018768)	ZNF341 (ENSPTIG00000019844)	CHMP4B (ENSPTIG00000021794)	RALY (ENSPTIG00000021910)	EIF2S2 (ENSPTIG00000022041)	ASIP (ENSPTIG00000022078) #15	AHCY (ENSPTIG00000022112) #16	ITCH (ENSPTIG00000005169) #18	DYNLRB1 (ENSPTIG00000007501) #19	MAP1LC3A (ENSPTIG00000008448) #20	PIGU (ENSPTIG00000009571) #21	TP53INP2 (ENSPTIG00000011147) #22	NCOA6 (ENSPTIG00000011719) #23	GGT7 (ENSPTIG00000016105) #24	ACSS2 (ENSPTIG00000017967) #25	GSS (ENSPTIG00000004924) #26	MYH7B (ENSPTIG00000006924) #27	TRPC4AP (ENSPTIG00000013230) #28	EDEM2 (ENSPTIG00000016873) #29	PROCR (ENSPTIG00000018834) #30	MMP24 (ENSPTIG00000019086) #31	ENSPTIG00000004000	EIF6 (ENSPTIG00000020323) #32	FAM83C (ENSPTIG00000020766) #33	UQCC1 (ENSPTIG00000000492) #34	GDF5 (ENSPTIG00000011627) #36	ENSPTIG00000012329 #35
Cat	MODERN SPECIES	2	CBFA2T2 (ENSFCAG00000030382)	CA3H20orf144 (ENSFCAG00000021903)	ACTL10 (ENSFCAG00000005015)	NECAB3 (ENSFCAG00000005010)	E2F1 (ENSFCAG00000005016)	ZNF341 (ENSFCAG00000018478)	CHMP4B (ENSFCAG00000025893)	EIF2S2 (ENSFCAG00000026834)	RALY (ENSFCAG00000025252)	ASIP (ENSFCAG00000011037) #15	AHCY (ENSFCAG00000007301) #16	ITCH (ENSFCAG00000008780) #18	DYNLRB1 (ENSFCAG00000002304) #19	MAP1LC3A (ENSFCAG00000022040) #20	PIGU (ENSFCAG00000002305) #21	TP53INP2 (ENSFCAG00000045855) #22	NCOA6 (ENSFCAG00000002306) #23	GGT7 (ENSFCAG00000002307) #24	ACSS2 (ENSFCAG00000002309) #25	GSS (ENSFCAG00000002310) #26	ENSFCAG00000028061	MYH7B (ENSFCAG00000046530) #27	TRPC4AP (ENSFCAG00000002312) #28	EDEM2 (ENSFCAG00000002313) #29	PROCR (ENSFCAG00000002314) #30	MMP24 (ENSFCAG00000027275) #31	EIF6 (ENSFCAG00000006430) #32	FAM83C (ENSFCAG00000006431) #33	UQCC1 (ENSFCAG00000033453) #34	ENSFCAG00000025120 #35	GDF5 (ENSFCAG00000037811) #36
Caniformia	ANCESTRAL SPECIES		ENSGT00950000183131.a	ENSGT00390000013020	ENSGT00940000162922	ENSGT00940000159472	ENSGT00390000001562	ENSGT00390000000546	ENSGT00940000154663	ENSGT00940000157601	ENSGT00390000001804	ENSGT00940000154258.a #15	ENSGT00950000182981.a #16	ENSGT00940000157014 #18	ENSGT00390000011067.A #19	ENSGT00940000158853 #20	ENSGT00390000014941 #21	ENSGT00530000063829.C #22	ENSGT00730000111114 #23	ENSGT00940000156917 #24	ENSGT00940000156358 #25	ENSGT00390000013764 #26	ENSGT00940000160950 #27	ENSGT00390000018330 #28	ENSGT00940000159233 #29	ENSGT00390000001159 #30	ENSGT00940000158315 #31	ENSGT00390000015972 #32	ENSGT00940000160254 #33	ENSGT00390000018118 #34	ENSGT00400000024545 #35	ENSGT00940000160455 #36	ENSGT00940000161056
Canidae	ANCESTRAL SPECIES	19	ENSGT00950000183131.a	ENSGT00390000013020	ENSGT00940000162922	ENSGT00940000159472	ENSGT00390000001562	ENSGT00390000000546	ENSGT00940000154663	ENSGT00940000157601	ENSGT00390000001804	ENSGT00940000154258.a #15	ENSGT00950000182981.a #16	ENSGT00940000157014 #18	ENSGT00390000011067.A #19	ENSGT00940000158853 #20	ENSGT00390000014941 #21	ENSGT00530000063829.C #22	ENSGT00730000111114 #23	ENSGT00940000156917 #24	ENSGT00940000156358 #25	ENSGT00390000013764 #26	ENSGT00940000160950 #27	ENSGT00390000018330 #28	ENSGT00940000159233 #29	ENSGT00390000001159 #30	ENSGT00940000158315 #31	ENSGT00390000015972 #32	ENSGT00940000160254 #33	ENSGT00390000018118 #34	ENSGT00400000024545 #35	ENSGT00940000160455 #36	ENSGT00940000161056
Canis_lupus	ANCESTRAL SPECIES	13	ENSGT00940000162922	ENSGT00940000159472	ENSGT00390000001562	ENSGT00940000154661.a.a	ENSGT00390000000546	ENSGT00940000154663	ENSGT00940000157601	ENSGT00390000001804	ENSGT00940000154258.a #15	ENSGT00950000182981.a #16	ENSGT00390000017515.o.a	ENSGT00940000157014 #18	ENSGT00390000011067.A.jb #19	ENSGT00940000158853 #20	ENSGT00390000014941 #21	ENSGT00530000063829.C #22	ENSGT00730000111114 #23	ENSGT00940000156917 #24	ENSGT00940000156358 #25	ENSGT00390000013764 #26	ENSGT00940000160950 #27	ENSGT00390000018330 #28	ENSGT00940000159233 #29	ENSGT00390000001159 #30	ENSGT00940000158315 #31	ENSGT00390000015972 #32	ENSGT00940000160254 #33	ENSGT00390000018118 #34	ENSGT00940000160455 #36	ENSGT00940000161056	ENSGT00940000166164
Dog	MODERN SPECIES	16	NECAB3 (ENSCAFG00845024784)	ENSCAFG00845025080	ENSCAFG00845025127	E2F1 (ENSCAFG00845025182)	TIMM8A (ENSCAFG00845025368)	ZNF341 (ENSCAFG00845025407)	CHMP4B (ENSCAFG00845025558)	RALY (ENSCAFG00845025648)	EIF2S2 (ENSCAFG00845025914)	ASIP (ENSCAFG00845015715) #15	ENSCAFG00845015756 #16	ENSCAFG00845015788	ITCH (ENSCAFG00845015881) #18	DYNLRB1 (ENSCAFG00845016154) #19	PIGU (ENSCAFG00845016278) #21	TP53INP2 (ENSCAFG00845016363) #22	NCOA6 (ENSCAFG00845016505) #23	GGT7 (ENSCAFG00845016862) #24	ACSS2 (ENSCAFG00845017032) #25	GSS (ENSCAFG00845017262) #26	MYH7B (ENSCAFG00845017533) #27	TRPC4AP (ENSCAFG00845018297) #28	RPL21 (ENSCAFG00845018554)	EDEM2 (ENSCAFG00845018621) #29	PROCR (ENSCAFG00845018768) #30	MMP24 (ENSCAFG00845018823) #31	EIF6 (ENSCAFG00845018936) #32	FAM83C (ENSCAFG00845019082) #33	UQCC1 (ENSCAFG00845019298) #34	GDF5 (ENSCAFG00845019680) #36	CEP250 (ENSCAFG00845019804)
Dingo	MODERN SPECIES	343	ACTL10 (ENSCAFG00020004965)	E2F1 (ENSCAFG00020004968)	PXMP4 (ENSCAFG00020004976)	ENSCAFG00020004983	ZNF341 (ENSCAFG00020004998)	CHMP4B (ENSCAFG00020005042)	ENSCAFG00020005046	RALY (ENSCAFG00020005069)	EIF2S2 (ENSCAFG00020005078)	ASIP (ENSCAFG00020005092) #15	ENSCAFG00020005093	ITCH (ENSCAFG00020005109) #18	ENSCAFG00020005131 #19	MAP1LC3A (ENSCAFG00020005136) #20	PIGU (ENSCAFG00020005140) #21	TP53INP2 (ENSCAFG00020005204) #22	NCOA6 (ENSCAFG00020005210) #23	GGT7 (ENSCAFG00020005220) #24	ACSS2 (ENSCAFG00020005231) #25	GSS (ENSCAFG00020005260) #26	MYH7B (ENSCAFG00020005272) #27	TRPC4AP (ENSCAFG00020005309) #28	ENSCAFG00020005317	EDEM2 (ENSCAFG00020005321) #29	PROCR (ENSCAFG00020005331) #30	MMP24 (ENSCAFG00020005336) #31	EIF6 (ENSCAFG00020005353) #32	FAM83C (ENSCAFG00020005360) #33	UQCC1 (ENSCAFG00020005381) #34	GDF5 (ENSCAFG00020005418) #36	CEP250 (ENSCAFG00020005426)
Caniformia_b	ANCESTRAL SPECIES		ENSGT00390000013020	ENSGT00940000162922	ENSGT00950000183131.a	ENSGT00940000159472	ENSGT00390000001562	ENSGT00390000000546	ENSGT00940000154663	ENSGT00940000157601	ENSGT00390000001804	ENSGT00940000154258.a #15	ENSGT00950000182981.a #16	ENSGT00940000157014 #18	ENSGT00390000011067.A #19	ENSGT00940000158853 #20	ENSGT00390000014941 #21	ENSGT00530000063829.C #22	ENSGT00730000111114 #23	ENSGT00940000156917 #24	ENSGT00940000156358 #25	ENSGT00390000013764 #26	ENSGT00940000160950 #27	ENSGT00390000018330 #28	ENSGT00940000159233 #29	ENSGT00390000001159 #30	ENSGT00940000158315 #31	ENSGT00390000015972 #32	ENSGT00940000160254 #33	ENSGT00390000018118 #34	ENSGT00940000160455 #36	ENSGT00940000161056	ENSGT00510000049503
Mustelinae	ANCESTRAL SPECIES	11	ENSGT00390000013020	ENSGT00940000162922	ENSGT00950000183131.a	ENSGT00940000159472	ENSGT00390000001562	ENSGT00390000000546	ENSGT00940000154663	ENSGT00940000157601	ENSGT00390000001804	ENSGT00940000154258.a #15	ENSGT00950000182981.a #16	ENSGT00940000157014 #18	ENSGT00390000011067.A #19	ENSGT00940000158853 #20	ENSGT00390000014941 #21	ENSGT00530000063829.C #22	ENSGT00730000111114 #23	ENSGT00940000156917 #24	ENSGT00940000156358 #25	ENSGT00390000013764 #26	ENSGT00940000160950 #27	ENSGT00390000018330 #28	ENSGT00940000159233 #29	ENSGT00390000001159 #30	ENSGT00940000158315 #31	ENSGT00390000015972 #32	ENSGT00940000160254 #33	ENSGT00390000018118 #34	ENSGT00940000160455 #36	ENSGT00940000161056	ENSGT00510000049503
Ferret	MODERN SPECIES	180	CBFA2T2 (ENSMPUG00000017831)	ENSMPUG00000017829	NECAB3 (ENSMPUG00000017825)	E2F1 (ENSMPUG00000017824)	PXMP4 (ENSMPUG00000017823)	ZNF341 (ENSMPUG00000017822)	CHMP4B (ENSMPUG00000017821)	RALY (ENSMPUG00000017820)	EIF2S2 (ENSMPUG00000017819)	ASIP (ENSMPUG00000017818) #15	AHCY (ENSMPUG00000017817) #16	ITCH (ENSMPUG00000017816) #18	DYNLRB1 (ENSMPUG00000017815) #19	MAP1LC3A (ENSMPUG00000017814) #20	PIGU (ENSMPUG00000017813) #21	TP53INP2 (ENSMPUG00000017812) #22	NCOA6 (ENSMPUG00000017811) #23	GGT7 (ENSMPUG00000017810) #24	ACSS2 (ENSMPUG00000017809) #25	GSS (ENSMPUG00000017808) #26	MYH7B (ENSMPUG00000017807) #27	TRPC4AP (ENSMPUG00000017806) #28	EDEM2 (ENSMPUG00000017805) #29	PROCR (ENSMPUG00000017804) #30	MMP24 (ENSMPUG00000017803) #31	EIF6 (ENSMPUG00000017802) #32	FAM83C (ENSMPUG00000017801) #33	UQCC1 (ENSMPUG00000017800) #34	GDF5 (ENSMPUG00000017799) #36	CEP250 (ENSMPUG00000017798)	ERGIC3 (ENSMPUG00000017797)
American mink	MODERN SPECIES	17	ENSNVIG00000017895	ACTL10 (ENSNVIG00000017892)	NECAB3 (ENSNVIG00000017859)	E2F1 (ENSNVIG00000017832)	PXMP4 (ENSNVIG00000017800)	ZNF341 (ENSNVIG00000017752)	CHMP4B (ENSNVIG00000017728)	RALY (ENSNVIG00000017666)	EIF2S2 (ENSNVIG00000017647)	ASIP (ENSNVIG00000017624) #15	AHCY (ENSNVIG00000017607) #16	ITCH (ENSNVIG00000017551) #18	ENSNVIG00000017524 #19	MAP1LC3A (ENSNVIG00000017515) #20	PIGU (ENSNVIG00000017474) #21	TP53INP2 (ENSNVIG00000017453) #22	NCOA6 (ENSNVIG00000017415) #23	GGT7 (ENSNVIG00000017359) #24	ACSS2 (ENSNVIG00000017287) #25	GSS (ENSNVIG00000017212) #26	MYH7B (ENSNVIG00000015830) #27	TRPC4AP (ENSNVIG00000015688) #28	EDEM2 (ENSNVIG00000015640) #29	EPCR (ENSNVIG00000015621) #30	MMP24 (ENSNVIG00000015595) #31	IF6 (ENSNVIG00000015551) #32	FAM83C (ENSNVIG00000015534) #33	UQCC (ENSNVIG00000015323) #34	GDF5 (ENSNVIG00000015273) #36	CEP250 (ENSNVIG00000015133)	C20orf173 (ENSNVIG00000015115)
Ursidae	ANCESTRAL SPECIES	14	ENSGT00390000013020	ENSGT00940000162922	ENSGT00950000183131.a	ENSGT00940000159472	ENSGT00390000001562	ENSGT00390000000546	ENSGT00940000154663.j	ENSGT00940000157601	ENSGT00390000001804.b	ENSGT00940000154258.a #15	ENSGT00950000182981.a #16	ENSGT00940000157014 #18	ENSGT00390000011067.A #19	ENSGT00940000158853 #20	ENSGT00390000014941 #21	ENSGT00530000063829.C #22	ENSGT00730000111114 #23	ENSGT00940000156917 #24	ENSGT00940000156358 #25	ENSGT00540000070023.d.m.a	ENSGT00390000013764 #26	ENSGT00940000160950 #27	ENSGT00390000018330 #28	ENSGT00940000159233 #29	ENSGT00390000001159 #30	ENSGT00940000158315 #31	ENSGT00390000015972 #32	ENSGT00940000160254 #33	ENSGT00390000018118 #34	ENSGT00940000160455 #36	ENSGT00940000161056
Giant Panda	MODERN SPECIES	4	CBFA2T2 (ENSAMEG00000008925)	ENSAMEG00000019179	ACTL10 (ENSAMEG00000008990)	ENSAMEG00000008958	ENSAMEG00000009004	ZNF341 (ENSAMEG00000009012)	CHMP4B (ENSAMEG00000009038)	RALY (ENSAMEG00000009050)	EIF2S2 (ENSAMEG00000009071)	ASIP (ENSAMEG00000009091) #15	AHCY (ENSAMEG00000009105) #16	ITCH (ENSAMEG00000009134) #18	ENSAMEG00000009179 #19	MAP1LC3A (ENSAMEG00000009183) #20	PIGU (ENSAMEG00000009187) #21	TP53INP2 (ENSAMEG00000009209) #22	NCOA6 (ENSAMEG00000009213) #23	GGT7 (ENSAMEG00000009233) #24	ACSS2 (ENSAMEG00000009268) #25	ENSAMEG00000031509	GSS (ENSAMEG00000009334) #26	MYH7B (ENSAMEG00000009361) #27	TRPC4AP (ENSAMEG00000009593) #28	EDEM2 (ENSAMEG00000009658) #29	PROCR (ENSAMEG00000009692) #30	MMP24 (ENSAMEG00000009701) #31	EIF6 (ENSAMEG00000009775) #32	FAM83C (ENSAMEG00000009786) #33	UQCC1 (ENSAMEG00000009796) #34	GDF5 (ENSAMEG00000029208) #36	CEP250 (ENSAMEG00000009815)
Ursus	ANCESTRAL SPECIES	1	ENSGT00950000183131.a	ENSGT00390000013020	ENSGT00940000162922	ENSGT00940000159472	ENSGT00390000001562	ENSGT00390000000546	ENSGT00940000154663.j	ENSGT00940000157601	ENSGT00390000001804.b	ENSGT00940000154258.a #15	ENSGT00950000182981.a #16	ENSGT00940000157014 #18	ENSGT00390000011067.A #19	ENSGT00940000158853 #20	ENSGT00390000014941 #21	ENSGT00530000063829.C #22	ENSGT00730000111114 #23	ENSGT00940000156917 #24	ENSGT00940000156358.u #25	ENSGT00540000070023.d.m.a	ENSGT00390000013764 #26	ENSGT00940000160950 #27	ENSGT00390000018330 #28	ENSGT00940000159233 #29	ENSGT00390000001159 #30	ENSGT00940000158315 #31	ENSGT00390000015972 #32	ENSGT00940000160254 #33	ENSGT00390000018118 #34	ENSGT00940000160455 #36	ENSGT00940000161056
Polar bear	MODERN SPECIES	211											ENSUMAG00000005341 #15	AHCY (ENSUMAG00000005335) #16	ITCH (ENSUMAG00000005318) #18	ENSUMAG00000005309 #19	PIGU (ENSUMAG00000005298) #21	TP53INP2 (ENSUMAG00000005290) #22	NCOA6 (ENSUMAG00000005285) #23	GGT7 (ENSUMAG00000005258) #24	ACSS2 (ENSUMAG00000005237) #25	ENSUMAG00000005201	ENSUMAG00000005194 #26	ENSUMAG00000005187	MYH7B (ENSUMAG00000005146) #27	TRPC4AP (ENSUMAG00000005126) #28	EDEM2 (ENSUMAG00000005114) #29	PROCR (ENSUMAG00000005112) #30	MMP24 (ENSUMAG00000005105) #31	EIF6 (ENSUMAG00000005102) #32	FAM83C (ENSUMAG00000005095) #33	UQCC1 (ENSUMAG00000005083) #34	ENSUMAG00000005072 #36
American black bear	MODERN SPECIES	3506																TP53INP2 (ENSUAMG00000018144) #22	NCOA6 (ENSUAMG00000017933) #23	GGT7 (ENSUAMG00000017926) #24	ENSUAMG00000017925 #25
Laurasiatheria_c	ANCESTRAL SPECIES	17	ENSGT00950000183131.a	ENSGT00390000013020	ENSGT00940000162922	ENSGT00940000159472	ENSGT00390000001562	ENSGT00390000000546	ENSGT00940000154663	ENSGT00940000157601	ENSGT00390000001804	ENSGT00940000154258.a #15	ENSGT00950000182981.a #16	ENSGT00940000157014 #18	ENSGT00390000011067.A #19	ENSGT00940000158853 #20	ENSGT00390000014941 #21	ENSGT00530000063829.C #22	ENSGT00730000111114 #23	ENSGT00940000156917 #24	ENSGT00940000156358 #25	ENSGT00390000013764 #26	ENSGT00940000160950 #27	ENSGT00390000018330 #28	ENSGT00940000159233 #29	ENSGT00390000001159 #30	ENSGT00940000158315 #31	ENSGT00390000015972 #32	ENSGT00940000160254 #33	ENSGT00390000018118 #34	ENSGT00940000160455 #36	ENSGT00940000161056	ENSGT00940000166164
Equus	ANCESTRAL SPECIES	8	ENSGT00390000013020	ENSGT00940000162922	ENSGT00940000159472	ENSGT00390000001562	ENSGT00390000000546	ENSGT00940000154663	ENSGT00940000157601	ENSGT00390000001804	ENSGT01050000245239.e.b	ENSGT00940000154258.a #15	ENSGT00950000182981.a #16	ENSGT00940000157014 #18	ENSGT00390000011067.A #19	ENSGT00940000158853 #20	ENSGT00390000014941 #21	ENSGT00530000063829.C #22	ENSGT00730000111114 #23	ENSGT00940000156917 #24	ENSGT00940000156358 #25	ENSGT00390000013764 #26	ENSGT00940000160950 #27	ENSGT00390000018330 #28	ENSGT00940000159233 #29	ENSGT00390000001159 #30	ENSGT00940000158315 #31	ENSGT00390000015972 #32	ENSGT00940000160254 #33	ENSGT00390000018118 #34	ENSGT00940000160455 #36	ENSGT00940000161056	ENSGT00940000166164
Horse	MODERN SPECIES	14	NECAB3 (ENSECAG00000012086)	ENSECAG00000049637	ACTL10 (ENSECAG00000001232)	PXMP4 (ENSECAG00000024954)	ZNF341 (ENSECAG00000000301)	CHMP4B (ENSECAG00000008311)	RALY (ENSECAG00000012357)	EIF2S2 (ENSECAG00000050295)	ENSECAG00000040547	ASIP (ENSECAG00000004241) #15	ENSECAG00000055038	ENSECAG00000020551 #16	ENSECAG00000060369 #16	ITCH (ENSECAG00000016216) #18	PIGU (ENSECAG00000017510) #21	TP53INP2 (ENSECAG00000011160) #22	NCOA6 (ENSECAG00000011243) #23	GGT7 (ENSECAG00000000773) #24	ACSS2 (ENSECAG00000016389) #25	GSS (ENSECAG00000021620) #26	MYH7B (ENSECAG00000014246) #27	TRPC4AP (ENSECAG00000018628) #28	EDEM2 (ENSECAG00000011614) #29	PROCR (ENSECAG00000024428) #30	MMP24 (ENSECAG00000024778) #31	EIF6 (ENSECAG00000010701) #32	UQCC1 (ENSECAG00000011605) #33	GDF5 (ENSECAG00000019421) #36	CEP250 (ENSECAG00000021188)	ENSECAG00000011918	C22H20orf173 (ENSECAG00000012130)
Donkey	MODERN SPECIES	6	ENSEASG00005032176	E2F1 (ENSEASG00005008538)	PXMP4 (ENSEASG00005035010)	ZNF341 (ENSEASG00005008514)	ENSEASG00005034253	RALY (ENSEASG00005008501)	EIF2S2 (ENSEASG00005008498)	ASIP (ENSEASG00005024850) #15	ENSEASG00005033842	ENSEASG00005028379 #16	ENSEASG00005037670 #16	ITCH (ENSEASG00005007446) #18	ENSEASG00005036210 #19	ENSEASG00005032554 #20	PIGU (ENSEASG00005007165) #21	TP53INP2 (ENSEASG00005034772) #22	NCOA6 (ENSEASG00005006852) #23	GGT7 (ENSEASG00005006817) #24	ACSS2 (ENSEASG00005006749) #25	GSS (ENSEASG00005006418) #26	MYH7B (ENSEASG00005006406) #27	TRPC4AP (ENSEASG00005005988) #28	EDEM2 (ENSEASG00005005868) #29	PROCR (ENSEASG00005005851) #30	MMP24 (ENSEASG00005005847) #31	EIF6 (ENSEASG00005005842) #32	FAM83C (ENSEASG00005005839) #33	UQCC1 (ENSEASG00005005823) #34	GDF5 (ENSEASG00005005809) #36	CEP250 (ENSEASG00005005674)	ENSEASG00005033913
Chiroptera	ANCESTRAL SPECIES	7	ENSGT00950000183131.a	ENSGT00390000013020	ENSGT00940000162922	ENSGT00940000159472	ENSGT00390000001562	ENSGT00390000000546	ENSGT00940000154663	ENSGT00940000157601	ENSGT00390000001804	ENSGT00940000154258.a #15	ENSGT00950000182981.a #16	ENSGT00940000157014 #18	ENSGT00390000011067.A #19	ENSGT00940000158853 #20	ENSGT00390000014941 #21	ENSGT00530000063829.C #22	ENSGT00730000111114 #23	ENSGT00940000156917 #24	ENSGT00940000156358 #25	ENSGT00390000013764 #26	ENSGT00940000160950 #27	ENSGT00390000018330 #28	ENSGT00940000159233 #29	ENSGT00390000001159 #30	ENSGT00940000158315 #31	ENSGT00390000015972 #32	ENSGT00940000160254 #33	ENSGT00390000018118 #34	ENSGT00940000160455 #36	ENSGT00940000161056	ENSGT00510000049503
Microchiroptera	ANCESTRAL SPECIES	6	ENSGT00390000013020	ENSGT00940000162922	ENSGT00950000183131.a	ENSGT00940000159472	ENSGT00390000001562	ENSGT00390000000546	ENSGT00940000154663	ENSGT00940000157601	ENSGT00390000001804	ENSGT00940000154258.a #15	ENSGT00950000182981.a #16	ENSGT00940000157014 #18	ENSGT00390000011067.A #19	ENSGT00940000158853 #20	ENSGT00390000014941 #21	ENSGT00530000063829.C #22	ENSGT00730000111114 #23	ENSGT00940000156917 #24	ENSGT00940000156358 #25	ENSGT00390000013764 #26	ENSGT00940000160950 #27	ENSGT00390000018330 #28	ENSGT00940000159233 #29	ENSGT00390000001159 #30	ENSGT00940000158315 #31	ENSGT00390000015972 #32	ENSGT00940000160254 #33	ENSGT00390000018118 #34	ENSGT00940000160455 #36	ENSGT00940000161056	ENSGT00510000049503
Greater horseshoe bat	MODERN SPECIES	15	C20orf144 (ENSRFEG00010008315)	ACTL10 (ENSRFEG00010008302)	NECAB3 (ENSRFEG00010008150)	E2F1 (ENSRFEG00010008064)	PXMP4 (ENSRFEG00010008002)	ZNF341 (ENSRFEG00010007927)	ENSRFEG00010007891	CHMP4B (ENSRFEG00010007840)	RALY (ENSRFEG00010007771)	EIF2S2 (ENSRFEG00010007720)	ASIP (ENSRFEG00010007692) #15	AHCY (ENSRFEG00010007632) #16	ITCH (ENSRFEG00010007315) #18	MAP1LC3A (ENSRFEG00010007180) #20	PIGU (ENSRFEG00010007108) #21	TP53INP2 (ENSRFEG00010007077) #22	NCOA6 (ENSRFEG00010006952) #23	GGT7 (ENSRFEG00010006853) #24	ACSS2 (ENSRFEG00010006759) #25	GSS (ENSRFEG00010006666) #26	MYH7B (ENSRFEG00010006291) #27	TRPC4AP (ENSRFEG00010006148) #28	EDEM2 (ENSRFEG00010006007) #29	PROCR (ENSRFEG00010019162) #30	MMP24 (ENSRFEG00010019093) #31	ENSRFEG00010019080	EIF6 (ENSRFEG00010019027) #32	FAM83C (ENSRFEG00010018993) #33	UQCC1 (ENSRFEG00010018830) #34	GDF5 (ENSRFEG00010018734) #36	CEP250 (ENSRFEG00010018666)
Microbat	MODERN SPECIES	997	NECAB3 (ENSMLUG00000015354)	ACTL10 (ENSMLUG00000023024)	E2F1 (ENSMLUG00000015371)	PXMP4 (ENSMLUG00000015379)	ZNF341 (ENSMLUG00000015386)	ENSMLUG00000027593	CHMP4B (ENSMLUG00000015397)	ENSMLUG00000005330	EIF2S2 (ENSMLUG00000005335)	ASIP (ENSMLUG00000001062) #15	AHCY (ENSMLUG00000001070) #16	ITCH (ENSMLUG00000004798) #18	DYNLRB1 (ENSMLUG00000004820) #19	MAP1LC3A (ENSMLUG00000006105) #20	PIGU (ENSMLUG00000004825) #21	TP53INP2 (ENSMLUG00000006961) #22	NCOA6 (ENSMLUG00000006967) #23	GGT7 (ENSMLUG00000006030) #24	ACSS2 (ENSMLUG00000006040) #25	GSS (ENSMLUG00000006049) #26	MYH7B (ENSMLUG00000007312) #27	TRPC4AP (ENSMLUG00000007388) #28	EDEM2 (ENSMLUG00000004180) #29	PROCR (ENSMLUG00000004465) #30	MMP24 (ENSMLUG00000004468) #31	EIF6 (ENSMLUG00000004472) #32	FAM83C (ENSMLUG00000004473) #33	UQCC1 (ENSMLUG00000004477) #34	GDF5 (ENSMLUG00000004483) #36	CEP250 (ENSMLUG00000016216)	ENSMLUG00000016262
Megabat	MODERN SPECIES	3354													ITCH (ENSPVAG00000005445) #18	MAP1LC3A (ENSPVAG00000005446) #20	PIGU (ENSPVAG00000005448) #21	TP53INP2 (ENSPVAG00000005449) #22	NCOA6 (ENSPVAG00000005450) #23
Artiodactyla	ANCESTRAL SPECIES	18	ENSGT00950000183131.a	ENSGT00390000013020	ENSGT00940000162922	ENSGT00940000159472	ENSGT00390000001562	ENSGT00390000000546	ENSGT00940000154663	ENSGT00940000157601	ENSGT00390000001804	ENSGT00940000154258.a #15	ENSGT00950000182981.a #16	ENSGT00940000157014 #18	ENSGT00390000011067.A #19	ENSGT00940000158853 #20	ENSGT00390000014941 #21	ENSGT00530000063829.C #22	ENSGT00730000111114 #23	ENSGT00940000156917 #24	ENSGT00940000156358 #25	ENSGT00390000013764 #26	ENSGT00940000160950 #27	ENSGT00390000018330 #28	ENSGT00940000159233 #29	ENSGT00390000001159 #30	ENSGT00940000158315 #31	ENSGT01100000263751	ENSGT00390000015972 #32	ENSGT00940000160254 #33	ENSGT00390000018118 #34	ENSGT00940000160455 #36	ENSGT00400000024545 #35
Suina	ANCESTRAL SPECIES	9	ENSGT00950000182863.A.a.b	ENSGT00950000183176.a	ENSGT00950000183131.a	ENSGT00940000159472	ENSGT00390000001562	ENSGT00390000000546	ENSGT00940000154663	ENSGT00940000157601	ENSGT00390000001804	ENSGT00940000154258.a #15	ENSGT00950000182981.a #16	ENSGT00940000157014 #18	ENSGT00390000011067.A #19	ENSGT00940000158853 #20	ENSGT00390000014941 #21	ENSGT00530000063829.C #22	ENSGT00730000111114 #23	ENSGT00940000156917 #24	ENSGT00940000156358 #25	ENSGT00390000013764 #26	ENSGT00940000160950 #27	ENSGT00390000018330 #28	ENSGT00940000159233 #29	ENSGT00390000001159 #30	ENSGT00940000158315 #31	ENSGT00390000015972 #32	ENSGT00940000160254 #33	ENSGT00390000018118 #34	ENSGT00400000024545 #35	ENSGT00940000160455 #36	ENSGT00940000161056
Chacoan peccary	MODERN SPECIES	801	ENSCWAG00000006723	ACTL10 (ENSCWAG00000006716)	NECAB3 (ENSCWAG00000006683)	E2F1 (ENSCWAG00000006652)	PXMP4 (ENSCWAG00000006623)	ZNF341 (ENSCWAG00000006507)	ENSCWAG00000006485	RALY (ENSCWAG00000006424)	EIF2S2 (ENSCWAG00000006369)	ASIP (ENSCWAG00000006347) #15	AHCY (ENSCWAG00000006316) #16	ITCH (ENSCWAG00000006169) #18	DYNLRB1 (ENSCWAG00000006128) #19	MAP1LC3A (ENSCWAG00000006108) #20	PIGU (ENSCWAG00000006023) #21	TP53INP2 (ENSCWAG00000005997) #22	ENSCWAG00000005977	NCOA6 (ENSCWAG00000005835) #23	GGT7 (ENSCWAG00000005707) #24	ACSS2 (ENSCWAG00000005600) #25	GSS (ENSCWAG00000005543) #26	MYH7B (ENSCWAG00000005380) #27	ENSCWAG00000005351	TRPC4AP (ENSCWAG00000005309) #28	EDEM2 (ENSCWAG00000005222) #29	PROCR (ENSCWAG00000005193) #30	MMP24 (ENSCWAG00000005139) #31	EIF6 (ENSCWAG00000005109) #32	FAM83C (ENSCWAG00000005078) #33	UQCC1 (ENSCWAG00000004874) #34	ENSCWAG00000004844 #35
Pig	MODERN SPECIES	8	ENSSSCG00000047940	ACTL10 (ENSSSCG00000044750)	E2F1 (ENSSSCG00000007268)	ENSSSCG00000034625	ZNF341 (ENSSSCG00000021769)	CHMP4B (ENSSSCG00000007272)	RALY (ENSSSCG00000007275)	EIF2S2 (ENSSSCG00000026617)	ASIP (ENSSSCG00000053652) #15	AHCY (ENSSSCG00000007278) #16	ITCH (ENSSSCG00000007280) #18	ENSSSCG00000043574	ENSSSCG00000037510 #19	PIGU (ENSSSCG00000007282) #21	MAP1LC3A (ENSSSCG00000007281) #20	TP53INP2 (ENSSSCG00000022099) #22	ENSSSCG00000007284 #23	GGT7 (ENSSSCG00000007285) #24	ACSS2 (ENSSSCG00000007286) #25	GSS (ENSSSCG00000007287) #26	MYH7B (ENSSSCG00000007288) #27	TRPC4AP (ENSSSCG00000007289) #28	EDEM2 (ENSSSCG00000007291) #29	PROCR (ENSSSCG00000026585) #30	MMP24 (ENSSSCG00000040160) #31	EIF6 (ENSSSCG00000022864) #32	FAM83C (ENSSSCG00000028858) #33	UQCC1 (ENSSSCG00000038237) #34	ENSSSCG00000058047	ENSSSCG00000033077	GDF5 (ENSSSCG00000023261) #36
Artiodactyla_a	ANCESTRAL SPECIES	16	ENSGT00950000183131.a	ENSGT00390000013020	ENSGT00940000162922	ENSGT00940000159472	ENSGT00390000001562	ENSGT00390000000546	ENSGT00940000154663	ENSGT00940000157601	ENSGT00390000001804	ENSGT00940000154258.a #15	ENSGT00950000182981.a #16	ENSGT00940000157014 #18	ENSGT00390000011067.A #19	ENSGT00940000158853 #20	ENSGT00390000014941 #21	ENSGT00530000063829.C #22	ENSGT00730000111114 #23	ENSGT00940000156917 #24	ENSGT00940000156358 #25	ENSGT00390000013764 #26	ENSGT00940000160950 #27	ENSGT00390000018330 #28	ENSGT00940000159233 #29	ENSGT00390000001159 #30	ENSGT00940000158315 #31	ENSGT01100000263751	ENSGT00390000015972 #32	ENSGT00940000160254 #33	ENSGT00390000018118 #34	ENSGT00940000160455 #36	ENSGT00400000024545 #35
Camelidae	ANCESTRAL SPECIES	10	ENSGT00950000183131.a	ENSGT00390000013020	ENSGT00940000162922	ENSGT00940000159472	ENSGT00390000001562	ENSGT00390000000546	ENSGT00940000154663	ENSGT00940000157601.h	ENSGT00390000001804	ENSGT00940000154258.a #15	ENSGT00950000182981.a #16	ENSGT00940000157014 #18	ENSGT00390000011067.A #19	ENSGT00940000158853 #20	ENSGT00390000014941 #21	ENSGT00530000063829.C #22	ENSGT00730000111114 #23	ENSGT00940000156917 #24	ENSGT00940000156358 #25	ENSGT00390000013764 #26	ENSGT00940000160950 #27	ENSGT00390000018330 #28	ENSGT00940000159233 #29	ENSGT00390000001159 #30	ENSGT00940000158315 #31	ENSGT01100000263751	ENSGT00390000015972 #32	ENSGT00940000160254 #33	ENSGT00390000018118 #34	ENSGT00940000160455 #36	ENSGT00400000024545 #35
Arabian camel	MODERN SPECIES	10	NECAB3 (ENSCDRG00005011220)	C20orf144 (ENSCDRG00005011343)	ACTL10 (ENSCDRG00005011389)	PXMP4 (ENSCDRG00005011563)	ZNF341 (ENSCDRG00005011605)	CHMP4B (ENSCDRG00005012040)	ENSCDRG00005012091	ENSCDRG00005012122	EIF2S2 (ENSCDRG00005012288)	ASIP (ENSCDRG00005012368) #15	AHCY (ENSCDRG00005012422) #16	ITCH (ENSCDRG00005012516) #18	DYNLRB1 (ENSCDRG00005012749) #19	ENSCDRG00005012808 #20	PIGU (ENSCDRG00005012895) #21	TP53INP2 (ENSCDRG00005013010) #22	NCOA6 (ENSCDRG00005013057) #23	GGT7 (ENSCDRG00005013179) #24	ACSS2 (ENSCDRG00005013262) #25	ENSCDRG00005013466	GSS (ENSCDRG00005013533) #26	MYH7B (ENSCDRG00005013768) #27	TRPC4AP (ENSCDRG00005014624) #28	EDEM2 (ENSCDRG00005014701) #29	PROCR (ENSCDRG00005014931) #30	MMP24 (ENSCDRG00005014966) #31	ENSCDRG00005015087	EIF6 (ENSCDRG00005015119) #32	FAM83C (ENSCDRG00005015187) #33	UQCC1 (ENSCDRG00005015218) #34	GDF5 (ENSCDRG00005015261) #36
Artiodactyla_b	ANCESTRAL SPECIES	17	ENSGT00950000183131.a	ENSGT00390000013020	ENSGT00940000162922	ENSGT00940000159472	ENSGT00390000001562	ENSGT00390000000546	ENSGT00940000154663.r.a	ENSGT00940000157601	ENSGT00390000001804	ENSGT00940000154258.a #15	ENSGT00950000182981.a #16	ENSGT00940000157014 #18	ENSGT00390000011067.A #19	ENSGT00940000158853 #20	ENSGT00390000014941 #21	ENSGT00530000063829.C #22	ENSGT00730000111114 #23	ENSGT00940000156917 #24	ENSGT00940000156358 #25	ENSGT00390000013764 #26	ENSGT00940000160950 #27	ENSGT00390000018330 #28	ENSGT00940000159233 #29	ENSGT00390000001159 #30	ENSGT00940000158315 #31	ENSGT01100000263751	ENSGT00390000015972 #32	ENSGT00940000160254 #33	ENSGT00390000018118 #34	ENSGT00940000160455 #36	ENSGT00400000024545 #35
Cetacea	ANCESTRAL SPECIES	3	ENSGT00390000013020	ENSGT00940000162922	ENSGT00950000183131.a	ENSGT00940000159472	ENSGT00390000001562	ENSGT00390000000546	ENSGT00940000154663.r.a	ENSGT00940000157601	ENSGT00390000001804	ENSGT00940000154258.a #15	ENSGT00950000182981.a #16	ENSGT00940000157014 #18	ENSGT00390000011067.A #19	ENSGT00940000158853 #20	ENSGT00390000014941 #21	ENSGT00530000063829.C #22	ENSGT00730000111114 #23	ENSGT00940000156917 #24	ENSGT00940000156358 #25	ENSGT00390000013764 #26	ENSGT00940000160950 #27	ENSGT00390000018330 #28	ENSGT00940000159233 #29	ENSGT00390000001159 #30	ENSGT00940000158315 #31	ENSGT00390000015972 #32	ENSGT00940000160254 #33	ENSGT00390000018118 #34	ENSGT00940000160455 #36	ENSGT00940000161056	ENSGT00510000049503
Odontoceti	ANCESTRAL SPECIES	3	ENSGT00390000013020	ENSGT00940000162922	ENSGT00950000183131.a	ENSGT00940000159472	ENSGT00390000001562	ENSGT00390000000546	ENSGT00940000154663.r.a	ENSGT00940000157601	ENSGT00390000001804	ENSGT00940000154258.a #15	ENSGT00950000182981.a #16	ENSGT00940000157014 #18	ENSGT00390000011067.A #19	ENSGT00940000158853 #20	ENSGT00390000014941 #21	ENSGT00530000063829.C #22	ENSGT00730000111114 #23	ENSGT00940000156917 #24	ENSGT00940000156358 #25	ENSGT00390000013764 #26	ENSGT00940000160950 #27	ENSGT00390000018330 #28	ENSGT00940000159233 #29	ENSGT00390000001159 #30	ENSGT00940000158315 #31	ENSGT00390000015972 #32	ENSGT00940000160254 #33	ENSGT00390000018118 #34	ENSGT00940000160455 #36	ENSGT00940000161056	ENSGT00510000049503
Odontoceti_a	ANCESTRAL SPECIES	3	ENSGT00390000013020	ENSGT00940000162922	ENSGT00950000183131.a	ENSGT00940000159472	ENSGT00390000001562	ENSGT00390000000546	ENSGT00940000154663.r.a	ENSGT00940000157601	ENSGT00390000001804	ENSGT00940000154258.a #15	ENSGT00950000182981.a #16	ENSGT00940000157014 #18	ENSGT00390000011067.A #19	ENSGT00940000158853 #20	ENSGT00390000014941 #21	ENSGT00530000063829.C #22	ENSGT00730000111114 #23	ENSGT00940000156917 #24	ENSGT00940000156358 #25	ENSGT00390000013764 #26	ENSGT00940000160950 #27	ENSGT00390000018330 #28	ENSGT00940000159233 #29	ENSGT00390000001159 #30	ENSGT00940000158315 #31	ENSGT00390000015972 #32	ENSGT00940000160254 #33	ENSGT00390000018118 #34	ENSGT00940000160455 #36	ENSGT00940000161056	ENSGT00510000049503
Odontoceti_b	ANCESTRAL SPECIES	3	ENSGT00390000013020	ENSGT00940000162922	ENSGT00950000183131.a	ENSGT00940000159472	ENSGT00390000001562	ENSGT00390000000546	ENSGT00940000154663.r.a	ENSGT00940000157601	ENSGT00390000001804	ENSGT00940000154258.a #15	ENSGT00950000182981.a #16	ENSGT00940000157014 #18	ENSGT00390000011067.A #19	ENSGT00940000158853 #20	ENSGT00390000014941 #21	ENSGT00530000063829.C #22	ENSGT00390000003022.j	ENSGT00730000111114 #23	ENSGT00940000156917 #24	ENSGT00940000156358 #25	ENSGT00390000013764 #26	ENSGT00940000160950 #27	ENSGT00390000018330 #28	ENSGT00940000159233 #29	ENSGT00390000001159 #30	ENSGT00940000158315 #31	ENSGT00390000015972 #32	ENSGT00940000160254 #33	ENSGT00390000018118 #34	ENSGT00940000160455 #36	ENSGT00940000161056
Monodontidae	ANCESTRAL SPECIES	1	ENSGT00390000013020	ENSGT00940000162922	ENSGT00950000183131.a	ENSGT00940000159472	ENSGT00390000001562	ENSGT00390000000546	ENSGT00940000154663.r.a	ENSGT00940000157601	ENSGT00390000001804	ENSGT00940000154258.a #15	ENSGT00950000182981.a #16	ENSGT00940000157014 #18	ENSGT00390000011067.A #19	ENSGT00940000158853 #20	ENSGT00390000014941 #21	ENSGT00530000063829.C #22	ENSGT00390000003022.j	ENSGT00730000111114 #23	ENSGT00940000156917 #24	ENSGT00940000156358 #25	ENSGT00390000013764 #26	ENSGT00940000160950 #27	ENSGT00390000018330 #28	ENSGT00940000159233 #29	ENSGT00390000001159 #30	ENSGT00940000158315 #31	ENSGT00390000015972 #32	ENSGT00940000160254 #33	ENSGT00390000018118 #34	ENSGT00940000160455 #36	ENSGT00940000161056
Narwhal	MODERN SPECIES	299	CBFA2T2 (ENSMMNG00015002029)	ENSMMNG00015001984	NECAB3 (ENSMMNG00015001933)	E2F1 (ENSMMNG00015001904)	PXMP4 (ENSMMNG00015001891)	ZNF341 (ENSMMNG00015001854)	ENSMMNG00015001817	RALY (ENSMMNG00015001794)	EIF2S2 (ENSMMNG00015001772)	ENSMMNG00015001751 #15	AHCY (ENSMMNG00015001713) #16	ITCH (ENSMMNG00015001660) #18	DYNLRB1 (ENSMMNG00015001633) #19	MAP1LC3A (ENSMMNG00015001604) #20	PIGU (ENSMMNG00015001564) #21	TP53INP2 (ENSMMNG00015001534) #22	ENSMMNG00015001517	NCOA6 (ENSMMNG00015001485) #23	GGT7 (ENSMMNG00015001393) #24	ACSS2 (ENSMMNG00015001297) #25	GSS (ENSMMNG00015001223) #26	MYH7B (ENSMMNG00015001132) #27	TRPC4AP (ENSMMNG00015001061) #28	EDEM2 (ENSMMNG00015001011) #29	PROCR (ENSMMNG00015000962) #30	MMP24 (ENSMMNG00015000916) #31	EIF6 (ENSMMNG00015000868) #32	FAM83C (ENSMMNG00015000839) #33	ENSMMNG00015000822	UQCC1 (ENSMMNG00015000668) #34	GDF5 (ENSMMNG00015000563) #36
Beluga whale	MODERN SPECIES	36	ENSDLEG00000018425	ACTL10 (ENSDLEG00000018420)	NECAB3 (ENSDLEG00000018392)	E2F1 (ENSDLEG00000018330)	PXMP4 (ENSDLEG00000018317)	ZNF341 (ENSDLEG00000018304)	CHMP4B (ENSDLEG00000018298)	RALY (ENSDLEG00000018282)	EIF2S2 (ENSDLEG00000018274)	ASIP (ENSDLEG00000018261) #15	AHCY (ENSDLEG00000018252) #16	ITCH (ENSDLEG00000018226) #18	DYNLRB1 (ENSDLEG00000018207) #19	MAP1LC3A (ENSDLEG00000018191) #20	PIGU (ENSDLEG00000018167) #21	TP53INP2 (ENSDLEG00000018151) #22	NCOA6 (ENSDLEG00000018098) #23	ENSDLEG00000018073	GGT7 (ENSDLEG00000018062) #24	ACSS2 (ENSDLEG00000018022) #25	GSS (ENSDLEG00000018003) #26	MYH7B (ENSDLEG00000017944) #27	TRPC4AP (ENSDLEG00000017867) #28	EDEM2 (ENSDLEG00000017813) #29	PROCR (ENSDLEG00000017795) #30	MMP24 (ENSDLEG00000017736) #31	EIF6 (ENSDLEG00000017711) #32	FAM83C (ENSDLEG00000017700) #33	UQCC1 (ENSDLEG00000017678) #34	GDF5 (ENSDLEG00000017646) #36	CEP250 (ENSDLEG00000017552)
Vaquita	MODERN SPECIES	6	SNTA1 (ENSPSNG00000015499)	CBFA2T2 (ENSPSNG00000015283)	ENSPSNG00000015208	NECAB3 (ENSPSNG00000015043)	E2F1 (ENSPSNG00000014974)	PXMP4 (ENSPSNG00000014910)	ZNF341 (ENSPSNG00000014477)	CHMP4B (ENSPSNG00000014408)	RALY (ENSPSNG00000014290)	EIF2S2 (ENSPSNG00000014204)	ASIP (ENSPSNG00000014123) #15	ENSPSNG00000014022 #16	ITCH (ENSPSNG00000013334) #18	MAP1LC3A (ENSPSNG00000013092) #20	PIGU (ENSPSNG00000012993) #21	TP53INP2 (ENSPSNG00000012935) #22	ENSPSNG00000012910	NCOA6 (ENSPSNG00000012808) #23	GGT7 (ENSPSNG00000012718) #24	ACSS2 (ENSPSNG00000012599) #25	GSS (ENSPSNG00000012466) #26	MYH7B (ENSPSNG00000012026) #27	TRPC4AP (ENSPSNG00000011589) #28	PROCR (ENSPSNG00000011430) #30	MMP24 (ENSPSNG00000011295) #31	EIF6 (ENSPSNG00000011211) #32	FAM83C (ENSPSNG00000011139) #33	UQCC1 (ENSPSNG00000010880) #34	GDF5 (ENSPSNG00000010716) #36	CEP250 (ENSPSNG00000010507)	ENSPSNG00000010402
Dolphin	MODERN SPECIES	2468												ITCH (ENSTTRG00000012426) #18	DYNLRB1 (ENSTTRG00000012461) #19	ENSTTRG00000012466 #20	PIGU (ENSTTRG00000012478) #21	TP53INP2 (ENSTTRG00000012489) #22	NCOA6 (ENSTTRG00000012494) #23
Sperm whale	MODERN SPECIES	5	BPIFA3 (ENSPCTG00005010684)	BPIFA1 (ENSPCTG00005010475)	CDK5RAP1 (ENSPCTG00005010350)	SNTA1 (ENSPCTG00005010299)	ENSPCTG00005010096	ZNF341 (ENSPCTG00005010042)	CHMP4B (ENSPCTG00005009997)	RALY (ENSPCTG00005009899)	EIF2S2 (ENSPCTG00005009850)	ITCH (ENSPCTG00005009484) #18	ENSPCTG00005009432	ENSPCTG00005009300 #16	MAP1LC3A (ENSPCTG00005009227) #20	ENSPCTG00005009176	PIGU (ENSPCTG00005008727) #21	TP53INP2 (ENSPCTG00005008663) #22	NCOA6 (ENSPCTG00005008566) #23	GGT7 (ENSPCTG00005008516) #24	ACSS2 (ENSPCTG00005008347) #25	GSS (ENSPCTG00005008290) #26	ENSPCTG00005008240 #27	TRPC4AP (ENSPCTG00005008061) #28	PROCR (ENSPCTG00005008023) #30	UQCC1 (ENSPCTG00005008009) #34	GDF5 (ENSPCTG00005007971) #36	CEP250 (ENSPCTG00005007930)	C20orf173 (ENSPCTG00005007895)	ERGIC3 (ENSPCTG00005007844)	ENSPCTG00005007817	SPAG4 (ENSPCTG00005007764)	CPNE1 (ENSPCTG00005007430)
Blue whale	MODERN SPECIES	6	E2F1 (ENSBMSG00010014642)	PXMP4 (ENSBMSG00010014607)	ZNF341 (ENSBMSG00010014577)	ENSBMSG00010014552	RALY (ENSBMSG00010014524)	EIF2S2 (ENSBMSG00010014478)	ENSBMSG00010014441 #15	AHCY (ENSBMSG00010014387) #16	ENSBMSG00010014355	ENSBMSG00010014323	ITCH (ENSBMSG00010014131) #18	ENSBMSG00010014031 #19	MAP1LC3A (ENSBMSG00010014008) #20	ENSBMSG00010013980	PIGU (ENSBMSG00010013941) #21	TP53INP2 (ENSBMSG00010013897) #22	NCOA6 (ENSBMSG00010013840) #23	GGT7 (ENSBMSG00010013779) #24	ACSS2 (ENSBMSG00010013760) #25	GSS (ENSBMSG00010013721) #26	MYH7B (ENSBMSG00010013658) #27	TRPC4AP (ENSBMSG00010013624) #28	EDEM2 (ENSBMSG00010013594) #29	PROCR (ENSBMSG00010013578) #30	MMP24 (ENSBMSG00010013568) #31	EIF6 (ENSBMSG00010013539) #32	FAM83C (ENSBMSG00010013518) #33	UQCC1 (ENSBMSG00010013459) #34	GDF5 (ENSBMSG00010013393) #36	CEP250 (ENSBMSG00010013353)	C20orf173 (ENSBMSG00010013312)
Pecora	ANCESTRAL SPECIES	9	ENSGT00940000162922	ENSGT00950000183176.a.s.a	ENSGT00950000183131.a	ENSGT00940000159472	ENSGT00390000001562	ENSGT00390000000546	ENSGT00940000154663.r.a	ENSGT00940000157601	ENSGT00390000001804	ENSGT00940000154258.a #15	ENSGT00950000182981.a #16	ENSGT00940000157014 #18	ENSGT00390000011067.A #19	ENSGT00940000158853 #20	ENSGT00390000014941 #21	ENSGT00530000063829.C #22	ENSGT00730000111114 #23	ENSGT00940000156917 #24	ENSGT00940000156358 #25	ENSGT00390000013764 #26	ENSGT00940000160950 #27	ENSGT00390000018330 #28	ENSGT00940000159233 #29	ENSGT00390000001159 #30	ENSGT00940000158315 #31	ENSGT01100000263751	ENSGT00390000015972 #32	ENSGT00940000160254 #33	ENSGT00390000018118 #34	ENSGT00940000160455 #36	ENSGT00400000024545 #35
Yarkand deer	MODERN SPECIES	15	ENSCHYG00000021007	ACTL10 (ENSCHYG00000021085)	E2F1 (ENSCHYG00000021119)	PXMP4 (ENSCHYG00000021195)	ZNF341 (ENSCHYG00000021267)	CHMP4B (ENSCHYG00000021413)	RALY (ENSCHYG00000021487)	EIF2S2 (ENSCHYG00000021669)	ASIP (ENSCHYG00000021759) #15	ENSCHYG00000021816 #16	ITCH (ENSCHYG00000021902) #18	DYNLRB1 (ENSCHYG00000022408) #19	MAP1LC3A (ENSCHYG00000022485) #20	PIGU (ENSCHYG00000022535) #21	ENSCHYG00000022610	TP53INP2 (ENSCHYG00000022628) #22	NCOA6 (ENSCHYG00000022710) #23	ENSCHYG00000022876	GGT7 (ENSCHYG00000022901) #24	ACSS2 (ENSCHYG00000023008) #25	GSS (ENSCHYG00000023257) #26	MYH7B (ENSCHYG00000023494) #27	TRPC4AP (ENSCHYG00000023747) #28	EDEM2 (ENSCHYG00000023864) #29	PROCR (ENSCHYG00000024034) #30	MMP24 (ENSCHYG00000024108) #31	EIF6 (ENSCHYG00000024220) #32	FAM83C (ENSCHYG00000024249) #33	ENSCHYG00000024276	UQCC1 (ENSCHYG00000024318) #34	GDF5 (ENSCHYG00000024419) #36
Percora_a	ANCESTRAL SPECIES	10	ENSGT00940000162922	ENSGT00950000183176.a.s.a	ENSGT00950000183131.a	ENSGT00940000159472	ENSGT00390000001562	ENSGT00390000000546	ENSGT00940000154663.r.a	ENSGT00940000157601	ENSGT00390000001804	ENSGT00940000154258.a #15	ENSGT00950000182981.a #16	ENSGT00940000157014 #18	ENSGT00390000011067.A #19	ENSGT00940000158853 #20	ENSGT00390000014941 #21	ENSGT00530000063829.C #22	ENSGT00730000111114 #23	ENSGT00940000156917 #24	ENSGT00940000156358 #25	ENSGT00390000013764 #26	ENSGT00940000160950 #27	ENSGT00390000018330 #28	ENSGT00940000159233 #29	ENSGT00390000001159 #30	ENSGT00940000158315 #31	ENSGT01100000263751	ENSGT00390000015972 #32	ENSGT00940000160254 #33	ENSGT00390000018118 #34	ENSGT00940000160455 #36	ENSGT00400000024545 #35
Siberian musk deer	MODERN SPECIES	1198	ENSMMSG00000012346	ACTL10 (ENSMMSG00000012331)	NECAB3 (ENSMMSG00000012299)	E2F1 (ENSMMSG00000012256)	PXMP4 (ENSMMSG00000012229)	ZNF341 (ENSMMSG00000012195)	CHMP4B (ENSMMSG00000012164)	RALY (ENSMMSG00000012103)	EIF2S2 (ENSMMSG00000012063)	ASIP (ENSMMSG00000012026) #15	AHCY (ENSMMSG00000011983) #16	ITCH (ENSMMSG00000011807) #18	DYNLRB1 (ENSMMSG00000011749) #19	MAP1LC3A (ENSMMSG00000011725) #20	PIGU (ENSMMSG00000011679) #21	TP53INP2 (ENSMMSG00000011648) #22	NCOA6 (ENSMMSG00000011597) #23	GGT7 (ENSMMSG00000011531) #24	ACSS2 (ENSMMSG00000011407) #25	ENSMMSG00000011371	GSS (ENSMMSG00000011243) #26	MYH7B (ENSMMSG00000010919) #27	TRPC4AP (ENSMMSG00000010843) #28	EDEM2 (ENSMMSG00000010736) #29	PROCR (ENSMMSG00000010674) #30	MMP24 (ENSMMSG00000010627) #31	EIF6 (ENSMMSG00000010588) #32	FAM83C (ENSMMSG00000010566) #33	UQCC1 (ENSMMSG00000010448) #34	ENSMMSG00000010415 #35	GDF5 (ENSMMSG00000010393) #36
Bovidae	ANCESTRAL SPECIES	10	ENSGT00390000013020	ENSGT00940000162922	ENSGT00940000159472	ENSGT00390000001562	ENSGT00390000000546	ENSGT00940000154663.r.a	ENSGT00940000157601	ENSGT00390000001804	ENSGT00940000154258.a #15	ENSGT00950000182981.a #16	ENSGT00940000157014 #18	ENSGT00390000011067.A #19	ENSGT00940000158853 #20	ENSGT00390000014941 #21	ENSGT00940000155114.wb.a	ENSGT00530000063829.C #22	ENSGT00730000111114 #23	ENSGT00940000156917 #24	ENSGT00940000156358 #25	ENSGT00390000013764 #26	ENSGT00940000160950 #27	ENSGT00390000018330 #28	ENSGT00940000159233 #29	ENSGT00390000001159 #30	ENSGT00940000158315 #31	ENSGT01100000263751	ENSGT00390000015972 #32	ENSGT00940000160254 #33	ENSGT00390000018118 #34	ENSGT00940000160455 #36	ENSGT00400000024545 #35
Caprinae	ANCESTRAL SPECIES	21	ENSGT00390000013020	ENSGT00940000162922	ENSGT00940000159472	ENSGT00390000001562	ENSGT00390000000546	ENSGT00940000154663.r.a	ENSGT00940000157601	ENSGT00390000001804	ENSGT00940000154258.a #15	ENSGT00950000182981.a #16	ENSGT00940000157014 #18	ENSGT00390000011067.A #19	ENSGT00940000158853 #20	ENSGT00390000014941 #21	ENSGT00940000155114.wb.a	ENSGT00530000063829.C #22	ENSGT00730000111114 #23	ENSGT00940000156917 #24	ENSGT00940000156358 #25	ENSGT00390000013764 #26	ENSGT00940000160950 #27	ENSGT00390000018330 #28	ENSGT00940000159233 #29	ENSGT00390000001159 #30	ENSGT00940000158315 #31	ENSGT00390000015972 #32	ENSGT00940000160254 #33	ENSGT00390000018118 #34	ENSGT00940000160455 #36	ENSGT00400000024545 #35	ENSGT00940000161056
Goat	MODERN SPECIES	4	ACTL10 (ENSCHIG00000002177)	E2F1 (ENSCHIG00000015683)	PXMP4 (ENSCHIG00000019935)	ZNF341 (ENSCHIG00000018677)	CHMP4B (ENSCHIG00000015320)	RALY (ENSCHIG00000026609)	ENSCHIG00000026317	ENSCHIG00000012008	ASIP (ENSCHIG00000014323) #15	AHCY (ENSCHIG00000026741) #16	ITCH (ENSCHIG00000013191) #18	DYNLRB1 (ENSCHIG00000017947) #19	MAP1LC3A (ENSCHIG00000022203) #20	PIGU (ENSCHIG00000024810) #21	ENSCHIG00000012729	TP53INP2 (ENSCHIG00000025399) #22	NCOA6 (ENSCHIG00000016934) #23	GGT7 (ENSCHIG00000023150) #24	ACSS2 (ENSCHIG00000023954) #25	GSS (ENSCHIG00000026043) #26	MYH7B (ENSCHIG00000018193) #27	TRPC4AP (ENSCHIG00000020184) #28	EDEM2 (ENSCHIG00000010223) #29	PROCR (ENSCHIG00000021754) #30	MMP24 (ENSCHIG00000012983) #31	EIF6 (ENSCHIG00000011324) #32	FAM83C (ENSCHIG00000020912) #33	UQCC1 (ENSCHIG00000012942) #34	GDF5 (ENSCHIG00000012502) #36	ENSCHIG00000024590 #35	CEP250 (ENSCHIG00000024256)
Rambouillet Sheep	MODERN SPECIES	4	ENSOARG00020011013	ENSOARG00020011066	NECAB3 (ENSOARG00020011215)	ENSOARG00020011959	E2F1 (ENSOARG00020011997)	PXMP4 (ENSOARG00020012090)	ZNF341 (ENSOARG00020012178)	CHMP4B (ENSOARG00020012426)	RALY (ENSOARG00020012493)	ENSOARG00020012697	AHCY (ENSOARG00020012830) #16	ITCH (ENSOARG00020013255) #18	DYNLRB1 (ENSOARG00020013544) #19	MAP1LC3A (ENSOARG00020013584) #20	PIGU (ENSOARG00020013640) #21	TP53INP2 (ENSOARG00020013838) #22	NCOA6 (ENSOARG00020013923) #23	GGT7 (ENSOARG00020014171) #24	ACSS2 (ENSOARG00020014319) #25	GSS (ENSOARG00020003193) #26	MYH7B (ENSOARG00020003288) #27	TRPC4AP (ENSOARG00020003691) #28	EDEM2 (ENSOARG00020003739) #29	PROCR (ENSOARG00020003823) #30	MMP24 (ENSOARG00020003845) #31	EIF6 (ENSOARG00020003878) #32	FAM83C (ENSOARG00020003913) #33	UQCC1 (ENSOARG00020003944) #34	GDF5 (ENSOARG00020004033) #36	ENSOARG00020004055 #35	CEP250 (ENSOARG00020004083)
Bovinae	ANCESTRAL SPECIES	23	ENSGT00950000183131.a	ENSGT00940000159472	ENSGT00390000001562.a	ENSGT00390000000546	ENSGT00940000154663.r.a	ENSGT00940000157601	ENSGT00390000001804	ENSGT00940000154258.a #15	ENSGT00950000182981.a #16	ENSGT00390000014165.c.a.b.b.b	ENSGT00940000157014.a #18	ENSGT00390000011067.A #19	ENSGT00940000158853 #20	ENSGT00390000014941 #21	ENSGT00940000155114.wb.a	ENSGT00530000063829.C #22	ENSGT00730000111114 #23	ENSGT00940000156917 #24	ENSGT00940000156358 #25	ENSGT00390000013764 #26	ENSGT00940000160950 #27	ENSGT00390000018330 #28	ENSGT00940000159233 #29	ENSGT00390000001159 #30	ENSGT00940000158315 #31	ENSGT01100000263751	ENSGT00390000015972 #32	ENSGT00940000160254 #33	ENSGT00390000018118 #34	ENSGT00940000160455 #36	ENSGT00400000024545 #35
American bison	MODERN SPECIES	3266	ENSBBBG00000004464	ACTL10 (ENSBBBG00000018177)	E2F1 (ENSBBBG00000008832)	ENSBBBG00000004455	ZNF341 (ENSBBBG00000018116)	CHMP4B (ENSBBBG00000004443)	RALY (ENSBBBG00000004441)	EIF2S2 (ENSBBBG00000004436)	ASIP (ENSBBBG00000018031) #15	AHCY (ENSBBBG00000018017) #16	ENSBBBG00000007314	ENSBBBG00000008776 #18	DYNLRB1 (ENSBBBG00000017935) #19	ENSBBBG00000017926 #20	PIGU (ENSBBBG00000017915) #21	TP53INP2 (ENSBBBG00000017873) #22	NCOA6 (ENSBBBG00000017859) #23	GGT7 (ENSBBBG00000017786) #24	ACSS2 (ENSBBBG00000017774) #25	GSS (ENSBBBG00000017707) #26	MYH7B (ENSBBBG00000017591) #27	TRPC4AP (ENSBBBG00000008559) #28	EDEM2 (ENSBBBG00000004331) #29	PROCR (ENSBBBG00000017455) #30	MMP24 (ENSBBBG00000017441) #31	EIF6 (ENSBBBG00000007181) #32	FAM83C (ENSBBBG00000017410) #33	UQCC1 (ENSBBBG00000017394) #34	GDF5 (ENSBBBG00000017356) #36	ENSBBBG00000008344 #35	CEP250 (ENSBBBG00000017341)
Bos	ANCESTRAL SPECIES	24	ENSGT00950000183131.a	ENSGT00940000159472	ENSGT00390000001562.a	ENSGT00390000000546	ENSGT00940000154663.r.a	ENSGT00940000157601	ENSGT00390000001804	ENSGT00940000154258.a #15	ENSGT00950000182981.a #16	ENSGT00390000014165.c.a.b.b.b	ENSGT00940000157014.a #18	ENSGT00390000011067.A #19	ENSGT00940000158853 #20	ENSGT00390000014941 #21	ENSGT00940000155114.wb.a	ENSGT00530000063829.C #22	ENSGT00730000111114 #23	ENSGT00940000156917 #24	ENSGT00940000156358 #25	ENSGT00390000013764 #26	ENSGT00940000160950 #27	ENSGT00390000018330 #28	ENSGT00940000159233 #29	ENSGT00390000001159 #30	ENSGT00940000158315 #31	ENSGT01100000263751	ENSGT00390000015972 #32	ENSGT00940000160254 #33	ENSGT00390000018118 #34	ENSGT00940000160455 #36	ENSGT00400000024545 #35
Bos_b	ANCESTRAL SPECIES	26	ENSGT00940000162922	ENSGT00950000183131.a	ENSGT00940000159472	ENSGT00390000001562.a.a	ENSGT00390000000546	ENSGT00940000154663.r.a	ENSGT00940000157601	ENSGT00390000001804	ENSGT00940000154258.a #15	ENSGT00950000182981.a #16	ENSGT00390000014165.c.a.b.b.b	ENSGT00940000157014.a #18	ENSGT00390000011067.A #19	ENSGT00940000158853 #20	ENSGT00390000014941 #21	ENSGT00530000063829.C #22	ENSGT00730000111114 #23	ENSGT00940000156917 #24	ENSGT00940000156358 #25	ENSGT00390000013764 #26	ENSGT00940000160950 #27	ENSGT00390000018330 #28	ENSGT00940000159233 #29	ENSGT00390000001159 #30	ENSGT00940000158315 #31	ENSGT01100000263751	ENSGT00390000015972 #32	ENSGT00940000160254 #33	ENSGT00390000018118 #34	ENSGT00940000160455 #36	ENSGT00400000024545 #35
Hybrid Bos Indicus	MODERN SPECIES	4	ACTL10 (ENSBIXG00005028235)	NECAB3 (ENSBIXG00005028280)	E2F1 (ENSBIXG00005028294)	ENSBIXG00005028326	ZNF341 (ENSBIXG00005028356)	ENSBIXG00005004879	RALY (ENSBIXG00005028479)	EIF2S2 (ENSBIXG00005006636)	ASIP (ENSBIXG00005004914) #15	AHCY (ENSBIXG00005028542) #16	ENSBIXG00005028582	ENSBIXG00005028645 #18	DYNLRB1 (ENSBIXG00005028646) #19	MAP1LC3A (ENSBIXG00005002367) #20	PIGU (ENSBIXG00005028741) #21	TP53INP2 (ENSBIXG00005028772) #22	NCOA6 (ENSBIXG00005005032) #23	GGT7 (ENSBIXG00005002164) #24	ACSS2 (ENSBIXG00005005097) #25	GSS (ENSBIXG00005029045) #26	MYH7B (ENSBIXG00005001785) #27	TRPC4AP (ENSBIXG00005001700) #28	EDEM2 (ENSBIXG00005001632) #29	PROCR (ENSBIXG00005001603) #30	MMP24 (ENSBIXG00005005269) #31	ENSBIXG00005005278	EIF6 (ENSBIXG00005000522) #32	FAM83C (ENSBIXG00005009544) #33	UQCC1 (ENSBIXG00005009596) #34	ENSBIXG00005000546 #35	GDF5 (ENSBIXG00005009634) #36
Cow	MODERN SPECIES	4	NECAB3 (ENSBTAG00000003946)	C13H20orf144 (ENSBTAG00000003962)	E2F1 (ENSBTAG00000003971)	PXMP4 (ENSBTAG00000038738)	ZNF341 (ENSBTAG00000039313)	CHMP4B (ENSBTAG00000013387)	RALY (ENSBTAG00000016524)	EIF2S2 (ENSBTAG00000005969)	ASIP (ENSBTAG00000034077) #15	AHCY (ENSBTAG00000018101) #16	ENSBTAG00000046623	ITCH (ENSBTAG00000000308) #18	DYNLRB1 (ENSBTAG00000006134) #19	MAP1LC3A (ENSBTAG00000006135) #20	PIGU (ENSBTAG00000011620) #21	TP53INP2 (ENSBTAG00000005504) #22	NCOA6 (ENSBTAG00000007930) #23	GGT7 (ENSBTAG00000013301) #24	ACSS2 (ENSBTAG00000013303) #25	GSS (ENSBTAG00000003504) #26	MYH7B (ENSBTAG00000003512) #27	TRPC4AP (ENSBTAG00000002236) #28	EDEM2 (ENSBTAG00000003815) #29	PROCR (ENSBTAG00000008291) #30	MMP24 (ENSBTAG00000010024) #31	EIF6 (ENSBTAG00000011263) #32	FAM83C (ENSBTAG00000006278) #33	UQCC1 (ENSBTAG00000030990) #34	GDF5 (ENSBTAG00000004429) #36	ENSBTAG00000052250 #35	CEP250 (ENSBTAG00000006021)
Bos_a	ANCESTRAL SPECIES	7	ENSGT00940000162922	ENSGT00940000159472	ENSGT00390000001562.a	ENSGT00390000000546	ENSGT00940000154663.r.a	ENSGT00940000157601	ENSGT00390000001804	ENSGT00940000154258.a #15	ENSGT00950000182981.a #16	ENSGT00390000014165.c.a.b.b.b	ENSGT00940000157014.a #18	ENSGT00390000011067.A #19	ENSGT00940000158853 #20	ENSGT00390000014941 #21	ENSGT00940000155114.wb.a	ENSGT00530000063829.C #22	ENSGT00730000111114 #23	ENSGT00940000156917 #24	ENSGT00940000156358 #25	ENSGT00390000013764 #26	ENSGT00940000160950 #27	ENSGT00390000018330 #28	ENSGT00940000159233 #29	ENSGT00390000001159 #30	ENSGT00940000158315 #31	ENSGT00390000015972 #32	ENSGT00940000160254 #33	ENSGT00390000018118 #34	ENSGT00940000160455 #36	ENSGT00940000161056	ENSGT00510000049503
Wild yak	MODERN SPECIES	1171										AHCY (ENSBMUG00000005492) #16	ENSBMUG00000005472	ENSBMUG00000005459 #18	DYNLRB1 (ENSBMUG00000005419) #19	MAP1LC3A (ENSBMUG00000005414) #20	PIGU (ENSBMUG00000005403) #21	TP53INP2 (ENSBMUG00000005386) #22	NCOA6 (ENSBMUG00000005374) #23	GGT7 (ENSBMUG00000005347) #24	ACSS2 (ENSBMUG00000005320) #25	GSS (ENSBMUG00000005277) #26	MYH7B (ENSBMUG00000005177) #27	TRPC4AP (ENSBMUG00000005030) #28	EDEM2 (ENSBMUG00000004983) #29	PROCR (ENSBMUG00000004929) #30	MMP24 (ENSBMUG00000004921) #31	EIF6 (ENSBMUG00000004916) #32	FAM83C (ENSBMUG00000004894) #33	UQCC1 (ENSBMUG00000004875) #34	GDF5 (ENSBMUG00000004832) #36	CEP250 (ENSBMUG00000004812)	C20orf173 (ENSBMUG00000004772)
Domestic yak	MODERN SPECIES	3	E2F1 (ENSBGRG00000006368)	ENSBGRG00000006426	ZNF341 (ENSBGRG00000006484)	ENSBGRG00000006672	RALY (ENSBGRG00000006728)	ENSBGRG00000006852	ENSBGRG00000006899	ASIP (ENSBGRG00000006937) #15	AHCY (ENSBGRG00000006978) #16	ENSBGRG00000007087	ENSBGRG00000007118 #18	DYNLRB1 (ENSBGRG00000007315) #19	PIGU (ENSBGRG00000007389) #21	MAP1LC3A (ENSBGRG00000007760) #20	ENSBGRG00000007887	TP53INP2 (ENSBGRG00000007904) #22	NCOA6 (ENSBGRG00000007972) #23	GGT7 (ENSBGRG00000008436) #24	ACSS2 (ENSBGRG00000008633) #25	GSS (ENSBGRG00000008772) #26	MYH7B (ENSBGRG00000008965) #27	TRPC4AP (ENSBGRG00000009081) #28	EDEM2 (ENSBGRG00000009406) #29	PROCR (ENSBGRG00000009552) #30	MMP24 (ENSBGRG00000009612) #31	ENSBGRG00000009705 #32	UQCC1 (ENSBGRG00000009807) #34	FAM83C (ENSBGRG00000009993) #33	GDF5 (ENSBGRG00000010061) #36	CEP250 (ENSBGRG00000010182)	C20orf173 (ENSBGRG00000010310)
Atlantogenata	ANCESTRAL SPECIES	6	ENSGT00950000183131.a	ENSGT00390000013020	ENSGT00940000162922	ENSGT00940000159472	ENSGT00390000001562	ENSGT00390000000546	ENSGT00940000154663	ENSGT00940000157601	ENSGT00390000001804	ENSGT00940000154258.a #15	ENSGT00950000182981.a #16	ENSGT00940000157014 #18	ENSGT00390000011067.A #19	ENSGT00940000158853 #20	ENSGT00390000014941 #21	ENSGT00530000063829.C #22	ENSGT00730000111114 #23	ENSGT00940000156917 #24	ENSGT00940000156358 #25	ENSGT00390000013764 #26	ENSGT00940000160950 #27	ENSGT00390000018330 #28	ENSGT00940000159233 #29	ENSGT00390000001159 #30	ENSGT00940000158315 #31	ENSGT00390000015972 #32	ENSGT00940000160254 #33	ENSGT00390000018118 #34	ENSGT00940000160455 #36	ENSGT00400000024545 #35	ENSGT00940000161056
Xenarthra	ANCESTRAL SPECIES	323											ENSGT00940000154258.a #15	ENSGT00950000182981.a #16	ENSGT00940000157014 #18	ENSGT00940000158853 #20	ENSGT00390000014941 #21	ENSGT00530000063829.C #22	ENSGT00730000111114 #23	ENSGT00940000156917 #24	ENSGT00940000156358 #25	ENSGT00390000013764 #26	ENSGT00940000160950 #27	ENSGT00390000018330 #28	ENSGT00940000159233 #29
Armadillo	MODERN SPECIES	1199								ENSDNOG00000033926	ENSDNOG00000048128	ASIP (ENSDNOG00000025676) #15	AHCY (ENSDNOG00000005175) #16	ENSDNOG00000042112	ITCH (ENSDNOG00000010803) #18	MAP1LC3A (ENSDNOG00000010044) #20	PIGU (ENSDNOG00000037143) #21	TP53INP2 (ENSDNOG00000048308) #22	NCOA6 (ENSDNOG00000002534) #23	GGT7 (ENSDNOG00000008535) #24	ACSS2 (ENSDNOG00000018563) #25	GSS (ENSDNOG00000006355) #26	MYH7B (ENSDNOG00000046534) #27	ENSDNOG00000006372 #28	EDEM2 (ENSDNOG00000046351) #29
Afrotheria	ANCESTRAL SPECIES	3	ENSGT00950000183131.a	ENSGT00390000013020	ENSGT00940000162922	ENSGT00940000159472	ENSGT00390000001562	ENSGT00390000000546	ENSGT00940000154663	ENSGT00940000157601	ENSGT00390000001804	ENSGT00940000154258.a #15	ENSGT00950000182981.a #16	ENSGT00940000157014 #18	ENSGT00390000011067.A #19	ENSGT00940000158853 #20	ENSGT00390000014941 #21	ENSGT00530000063829.C #22	ENSGT00730000111114 #23	ENSGT00940000156917 #24	ENSGT00940000156358 #25	ENSGT00390000013764 #26	ENSGT00940000160950 #27	ENSGT00390000018330 #28	ENSGT00940000159233 #29	ENSGT00390000001159 #30	ENSGT00940000158315 #31	ENSGT00390000015972 #32	ENSGT00940000160254 #33	ENSGT00390000018118 #34	ENSGT00940000160455 #36	ENSGT00400000024545 #35	ENSGT00940000161056
Afrotheria_a	ANCESTRAL SPECIES	3	ENSGT00950000183131.a	ENSGT00390000013020	ENSGT00940000162922	ENSGT00940000159472	ENSGT00390000001562	ENSGT00390000000546	ENSGT00940000154663	ENSGT00940000157601	ENSGT00390000001804	ENSGT00940000154258.a #15	ENSGT00950000182981.a #16	ENSGT00940000157014 #18	ENSGT00390000011067.A #19	ENSGT00940000158853 #20	ENSGT00390000014941 #21	ENSGT00530000063829.C #22	ENSGT00730000111114 #23	ENSGT00940000156917 #24	ENSGT00940000156358 #25	ENSGT00390000013764 #26	ENSGT00940000160950 #27	ENSGT00390000018330 #28	ENSGT00940000159233 #29	ENSGT00390000001159 #30	ENSGT00940000158315 #31	ENSGT00390000015972 #32	ENSGT00940000160254 #33	ENSGT00390000018118 #34	ENSGT00940000160455 #36	ENSGT00400000024545 #35	ENSGT00940000161056
Elephant	MODERN SPECIES	180	NECAB3 (ENSLAFG00000018096)	ENSLAFG00000018104	ACTL10 (ENSLAFG00000018108)	E2F1 (ENSLAFG00000018114)	PXMP4 (ENSLAFG00000004616)	ZNF341 (ENSLAFG00000007128)	CHMP4B (ENSLAFG00000022958)	RALY (ENSLAFG00000000321)	EIF2S2 (ENSLAFG00000016639)	ASIP (ENSLAFG00000005229) #15	ENSLAFG00000028026 #16	ITCH (ENSLAFG00000011603) #18	DYNLRB1 (ENSLAFG00000029820) #19	MAP1LC3A (ENSLAFG00000027645) #20	PIGU (ENSLAFG00000017870) #21	TP53INP2 (ENSLAFG00000028073) #22	NCOA6 (ENSLAFG00000017769) #23	GGT7 (ENSLAFG00000026900) #24	ACSS2 (ENSLAFG00000021977) #25	GSS (ENSLAFG00000002517) #26	MYH7B (ENSLAFG00000002820) #27	TRPC4AP (ENSLAFG00000002824) #28	EDEM2 (ENSLAFG00000002827) #29	PROCR (ENSLAFG00000015078) #30	MMP24 (ENSLAFG00000012350) #31	EIF6 (ENSLAFG00000012356) #32	FAM83C (ENSLAFG00000029152) #33	UQCC1 (ENSLAFG00000012360) #34	GDF5 (ENSLAFG00000017482) #36	ENSLAFG00000017485 #35	CEP250 (ENSLAFG00000011886)
Hyrax	MODERN SPECIES	7474																TP53INP2 (ENSPCAG00000014124) #22	NCOA6 (ENSPCAG00000014141) #23
Marsupialia	ANCESTRAL SPECIES	9	ENSGT00940000162922	ENSGT00950000183131.a	ENSGT00940000159472	ENSGT00390000001562	ENSGT00390000000546	ENSGT00940000154663	ENSGT00940000155266.x	ENSGT00940000157601	ENSGT00390000001804	ENSGT00940000154258.a #15	ENSGT00950000182981.a.g #16	ENSGT00940000157014 #18	ENSGT00390000011067.A #19	ENSGT00940000158853 #20	ENSGT00390000014941 #21	ENSGT00530000063829.C #22	ENSGT00730000111114 #23	ENSGT00940000156917 #24	ENSGT00940000156358 #25	ENSGT00390000013764 #26	ENSGT00940000160950 #27	ENSGT00390000018330 #28	ENSGT00940000159233 #29	ENSGT00390000001159 #30	ENSGT00940000158315 #31	ENSGT00390000015972 #32	ENSGT00940000160254 #33	ENSGT00390000018118 #34	ENSGT00940000160455 #36	ENSGT00940000161056	ENSGT00530000063113.B
Opossum	MODERN SPECIES		ENSMODG00000002988	E2F1 (ENSMODG00000002875)	PXMP4 (ENSMODG00000002864)	ZNF341 (ENSMODG00000002856)	CHMP4B (ENSMODG00000002830)	ENSMODG00000002836	RALY (ENSMODG00000002819)	EIF2S2 (ENSMODG00000002805)	ENSMODG00000002765	ASIP (ENSMODG00000002762) #15	AHCY (ENSMODG00000002753) #16	ITCH (ENSMODG00000002732) #18	DYNLRB1 (ENSMODG00000002702) #19	MAP1LC3A (ENSMODG00000002694) #20	PIGU (ENSMODG00000002683) #21	TP53INP2 (ENSMODG00000002664) #22	NCOA6 (ENSMODG00000002651) #23	GGT7 (ENSMODG00000002630) #24	ENSMODG00000015242	ACSS2 (ENSMODG00000002614) #25	GSS (ENSMODG00000002598) #26	ENSMODG00000002575	TRPC4AP (ENSMODG00000001878) #28	ENSMODG00000001848 #30	MMP24 (ENSMODG00000001844) #31	ENSMODG00000045544 #34	GDF5 (ENSMODG00000001792) #36	CEP250 (ENSMODG00000001788)	ERGIC3 (ENSMODG00000001767)	ENSMODG00000001730	SPAG4 (ENSMODG00000001669)
Marsupialia_b	ANCESTRAL SPECIES	5	ENSGT00940000162922	ENSGT00950000183131.a	ENSGT00940000159472	ENSGT00390000001562	ENSGT00390000000546	ENSGT00940000155266.x	ENSGT00940000154663	ENSGT00940000157601	ENSGT00390000001804	ENSGT00940000154258.a #15	ENSGT00950000182981.a.g #16	ENSGT00940000157014 #18	ENSGT00390000011067.A #19	ENSGT00940000158853 #20	ENSGT00390000014941 #21	ENSGT00530000063829.C #22	ENSGT00730000111114 #23	ENSGT00940000156917 #24	ENSGT00940000156358 #25	ENSGT00390000013764 #26	ENSGT00940000160950 #27	ENSGT00390000018330 #28	ENSGT00940000159233 #29	ENSGT00390000001159 #30	ENSGT00940000158315 #31	ENSGT00390000015972 #32	ENSGT00940000160254 #33	ENSGT00390000018118 #34	ENSGT00940000160455 #36	ENSGT00940000161056	ENSGT00530000063113.B
Diprotodontia	ANCESTRAL SPECIES	4	ENSGT00950000183176.a	ENSGT00940000162922	ENSGT00950000183131.a	ENSGT00940000159472	ENSGT00390000001562	ENSGT00390000000546	ENSGT00940000155266.x	ENSGT00940000157601.x.a	ENSGT00390000001804	ENSGT00940000154258.a #15	ENSGT00950000182981.a.g #16	ENSGT00940000157014 #18	ENSGT00390000011067.A #19	ENSGT00940000158853 #20	ENSGT00390000014941 #21	ENSGT00530000063829.C #22	ENSGT00730000111114 #23	ENSGT00940000156917 #24	ENSGT00940000156358 #25	ENSGT00390000013764 #26	ENSGT00940000160950 #27	ENSGT00390000018330 #28	ENSGT00940000159233 #29	ENSGT00390000001159 #30	ENSGT00940000158315 #31	ENSGT00390000015972 #32	ENSGT00940000160254 #33	ENSGT00390000018118 #34	ENSGT00940000160455 #36	ENSGT00940000161056	ENSGT00530000063113.B
Diprotodontia_a	ANCESTRAL SPECIES	5	ENSGT00950000183131.a	ENSGT00940000159472	ENSGT00390000001562	ENSGT00390000000546	ENSGT00940000155266.x	ENSGT00940000154663	ENSGT00940000157601.x.b	ENSGT00940000157601.x.a	ENSGT00390000001804	ENSGT00940000154258.a #15	ENSGT00950000182981.a.g #16	ENSGT00940000157014 #18	ENSGT00390000011067.A #19	ENSGT00940000158853 #20	ENSGT00390000014941 #21	ENSGT00530000063829.C #22	ENSGT00730000111114 #23	ENSGT00940000156917 #24	ENSGT00940000156358 #25	ENSGT00390000013764 #26	ENSGT00940000160950 #27	ENSGT00390000018330 #28	ENSGT00940000159233 #29	ENSGT00390000001159 #30	ENSGT00940000158315 #31	ENSGT00390000015972 #32	ENSGT00940000160254 #33	ENSGT00390000018118 #34	ENSGT00940000160455 #36	ENSGT00940000161056	ENSGT00530000063113.B
Common wonbat	MODERN SPECIES	1023	ACTL10 (ENSVURG00010019341)	NECAB3 (ENSVURG00010019324)	E2F1 (ENSVURG00010019304)	PXMP4 (ENSVURG00010019297)	ZNF341 (ENSVURG00010019277)	ENSVURG00010019269	CHMP4B (ENSVURG00010019263)	ENSVURG00010019251	EIF2S2 (ENSVURG00010019246)	ASIP (ENSVURG00010019239) #15	AHCY (ENSVURG00010019234) #16	ITCH (ENSVURG00010019217) #18	DYNLRB1 (ENSVURG00010019208) #19	MAP1LC3A (ENSVURG00010019204) #20	PIGU (ENSVURG00010019190) #21	TP53INP2 (ENSVURG00010019184) #22	NCOA6 (ENSVURG00010019155) #23	GGT7 (ENSVURG00010019146) #24	ACSS2 (ENSVURG00010019114) #25	GSS (ENSVURG00010019082) #26	MYH7B (ENSVURG00010019023) #27	TRPC4AP (ENSVURG00010019011) #28	EDEM2 (ENSVURG00010019001) #29	EIF6 (ENSVURG00010018991) #32	ENSVURG00010018989 #33	UQCC1 (ENSVURG00010018970) #34	GDF5 (ENSVURG00010018960) #36	CEP250 (ENSVURG00010018949)	ERGIC3 (ENSVURG00010018933)	ENSVURG00010018931	ENSVURG00010018928
koala	MODERN SPECIES	74	E2F1 (ENSPCIG00000005835)	PXMP4 (ENSPCIG00000005843)	ZNF341 (ENSPCIG00000005844)	ENSPCIG00000005849	CHMP4B (ENSPCIG00000005848)	ENSPCIG00000011153	EIF2S2 (ENSPCIG00000011155)	ASIP (ENSPCIG00000028159) #15	ENSPCIG00000028158 #16	ENSPCIG00000028157	ITCH (ENSPCIG00000028155) #18	DYNLRB1 (ENSPCIG00000028154) #19	ENSPCIG00000028153 #20	ENSPCIG00000000272	PIGU (ENSPCIG00000028152) #21	TP53INP2 (ENSPCIG00000028151) #22	NCOA6 (ENSPCIG00000028150) #23	GGT7 (ENSPCIG00000028148) #24	ACSS2 (ENSPCIG00000028147) #25	GSS (ENSPCIG00000028146) #26	MYH7B (ENSPCIG00000028143) #27	TRPC4AP (ENSPCIG00000027987) #28	EDEM2 (ENSPCIG00000027979) #29	ENSPCIG00000027977 #30	MMP24 (ENSPCIG00000027976) #31	EIF6 (ENSPCIG00000027974) #32	FAM83C (ENSPCIG00000027973) #33	UQCC1 (ENSPCIG00000027972) #34	GDF5 (ENSPCIG00000027971) #36	ENSPCIG00000031746	ENSPCIG00000027970
Wallaby	MODERN SPECIES	14190																TP53INP2 (ENSMEUG00000012327) #22
Tasmanian devil	MODERN SPECIES	1	ENSSHAG00000024966	ENSSHAG00000023391	E2F1 (ENSSHAG00000029215)	ENSSHAG00000023415	PXMP4 (ENSSHAG00000029249)	ZNF341 (ENSSHAG00000022447)	ENSSHAG00000022664	ENSSHAG00000026098	ENSSHAG00000022710	EIF2S2 (ENSSHAG00000029026)	ENSSHAG00000031644	AHCY (ENSSHAG00000031421) #16	ITCH (ENSSHAG00000030062) #18	MAP1LC3A (ENSSHAG00000030605) #20	PIGU (ENSSHAG00000017606) #21	TP53INP2 (ENSSHAG00000017777) #22	NCOA6 (ENSSHAG00000017783) #23	GGT7 (ENSSHAG00000017889) #24	ACSS2 (ENSSHAG00000017995) #25	GSS (ENSSHAG00000018025) #26	MYH7B (ENSSHAG00000018092) #27	TRPC4AP (ENSSHAG00000027334) #28	EDEM2 (ENSSHAG00000018124) #29	PROCR (ENSSHAG00000023613) #30	ENSSHAG00000027231	MMP24 (ENSSHAG00000018297) #31	FAM83C (ENSSHAG00000018346) #33	ENSSHAG00000018354 #32	UQCC1 (ENSSHAG00000018380) #34	GDF5 (ENSSHAG00000018515) #36	ENSSHAG00000021239
Platypus	MODERN SPECIES	6										ENSOANG00000006054	SHISA6 (ENSOANG00000048722)	MMP24 (ENSOANG00000050183) #31	ENSOANG00000041393 #30	ENSOANG00000011546 #20	PIGU (ENSOANG00000011545) #21	TP53INP2 (ENSOANG00000041414) #22	NCOA6 (ENSOANG00000039332) #23	GGT7 (ENSOANG00000046941) #24	ACSS2 (ENSOANG00000036843) #25	GSS (ENSOANG00000006006) #26	MYH7B (ENSOANG00000044120) #27	TRPC4AP (ENSOANG00000049082) #28	EDEM2 (ENSOANG00000038445) #29	ENSOANG00000044537 #19	ITCH (ENSOANG00000012904) #18	AHCY (ENSOANG00000042794) #16	EIF2S2 (ENSOANG00000012907)	CHMP4B (ENSOANG00000012908)	ZNF341 (ENSOANG00000003442)	LUC7L3 (ENSOANG00000012492)	ANKRD40 (ENSOANG00000045526)
Sauria	ANCESTRAL SPECIES	16	ENSGT00950000183131.a	ENSGT00940000159472	ENSGT00390000001562	ENSGT00390000000546	ENSGT00940000154663	ENSGT00940000157601	ENSGT00390000001804	ENSGT00940000154258.a #15	ENSGT00950000182981.a #16	ENSGT00940000157014 #18	ENSGT00390000011067.A #19	ENSGT00940000158853 #20	ENSGT00390000014941 #21	ENSGT00980000199297	ENSGT00940000164556	ENSGT00530000063829.C #22	ENSGT00730000111114 #23	ENSGT00940000156917 #24	ENSGT00390000004786	ENSGT00940000155458	ENSGT00940000159849	ENSGT00940000155308	ENSGT00390000007796	ENSGT00960000189067	ENSGT00940000158442	ENSGT00940000155448	ENSGT00940000159708	ENSGT00940000153776.a.b	ENSGT00390000011581	ENSGT00940000156091.b	ENSGT00940000155326
Lepidosauria	ANCESTRAL SPECIES	6	ENSGT00950000183131.a	ENSGT00940000159472	ENSGT00390000001562	ENSGT00390000000546	ENSGT00940000154663	ENSGT00940000157601	ENSGT00390000001804	ENSGT00940000154258.a #15	ENSGT00950000182981.a #16	ENSGT00940000157014 #18	ENSGT00390000011067.A #19	ENSGT00940000158853 #20	ENSGT00390000014941 #21	ENSGT00980000199297	ENSGT00940000164556	ENSGT00530000063829.C #22	ENSGT00730000111114 #23	ENSGT00940000156917 #24	ENSGT00390000004786	ENSGT00940000155458	ENSGT00940000159849	ENSGT00940000155308	ENSGT00390000007796	ENSGT00960000189067	ENSGT00940000158442	ENSGT00940000155448	ENSGT00940000159708	ENSGT00940000153776.a.b	ENSGT00390000011581	ENSGT00940000156091.b	ENSGT00940000155326
Episquamata	ANCESTRAL SPECIES	1	ENSGT00950000183131.a	ENSGT00940000159472	ENSGT00390000001562	ENSGT00390000000546	ENSGT00940000154663	ENSGT00940000157601	ENSGT00390000001804	ENSGT00940000154258.a #15	ENSGT00950000182981.a #16	ENSGT00940000157014 #18	ENSGT00390000011067.A #19	ENSGT00940000158853 #20	ENSGT00390000014941 #21	ENSGT00980000199297	ENSGT00940000164556	ENSGT00530000063829.C #22	ENSGT00730000111114 #23	ENSGT00940000156917 #24	ENSGT00940000164912	ENSGT00940000164676	ENSGT00940000161068	ENSGT00940000162747	ENSGT00390000004786	ENSGT00940000155458	ENSGT00940000159849	ENSGT00940000155308	ENSGT00390000007796	ENSGT00960000189067	ENSGT00940000158442	ENSGT00940000155448	ENSGT00940000159708
Toxicofera	ANCESTRAL SPECIES	1	ENSGT00950000183131.a	ENSGT00940000159472	ENSGT00390000001562	ENSGT00390000000546	ENSGT00940000154663	ENSGT00940000157601	ENSGT00390000001804	ENSGT00940000154258.a #15	ENSGT00950000182981.a #16	ENSGT00940000157014 #18	ENSGT00390000011067.A #19	ENSGT00940000158853 #20	ENSGT00390000014941 #21	ENSGT00980000199297	ENSGT00940000164556	ENSGT00530000063829.C #22	ENSGT00730000111114 #23	ENSGT00940000156917 #24	ENSGT00940000164912	ENSGT00390000004786	ENSGT00940000155458	ENSGT00940000159849	ENSGT00940000155308	ENSGT00390000007796	ENSGT00940000158442	ENSGT00940000155448	ENSGT00940000159708	ENSGT00940000153776.a.b	ENSGT00390000011581	ENSGT00940000156091.b	ENSGT00940000155326
Elapidae	ANCESTRAL SPECIES	1	ENSGT00940000162922	ENSGT00950000183131.a	ENSGT00940000159472	ENSGT00390000001562	ENSGT00390000000546	ENSGT00940000154663	ENSGT00940000157601	ENSGT00390000001804	ENSGT00940000154258.a #15	ENSGT00950000182981.a #16	ENSGT00940000157014 #18	ENSGT00390000011067.A #19	ENSGT00940000158853 #20	ENSGT00390000014941 #21	ENSGT00980000199297	ENSGT00530000063829.C #22	ENSGT00730000111114 #23	ENSGT00940000156917 #24	ENSGT00390000004786	ENSGT00940000155458	ENSGT00940000159849	ENSGT00940000155308	ENSGT00390000007796	ENSGT00940000158442.y	ENSGT00940000155448	ENSGT00940000159708	ENSGT00940000153776.a.b	ENSGT00390000011581	ENSGT00940000156091.b	ENSGT00940000155326.pb	ENSGT00490000043380
Elapidae_a	ANCESTRAL SPECIES	3	ENSGT00950000183176.a	ENSGT00940000162922	ENSGT00950000183131.a	ENSGT00940000159472	ENSGT00390000001562	ENSGT00390000000546	ENSGT00940000154663	ENSGT00940000157601	ENSGT00390000001804	ENSGT00940000154258.a #15	ENSGT00950000182981.a #16	ENSGT00940000157014 #18	ENSGT00390000011067.A #19	ENSGT00940000158853 #20	ENSGT00390000014941 #21	ENSGT00530000063829.C #22	ENSGT00730000111114 #23	ENSGT00940000156917 #24	ENSGT00390000004786	ENSGT00940000155458	ENSGT00940000159849	ENSGT00940000155308	ENSGT00390000007796	ENSGT00940000158442.y	ENSGT00940000155448	ENSGT00940000159708	ENSGT00940000153776.a.b	ENSGT00390000011581	ENSGT00940000156091.b	ENSGT00940000155326.pb	ENSGT00490000043380
Acanthophiinae	ANCESTRAL SPECIES	2	ENSGT00950000183176.a	ENSGT00940000162922	ENSGT00950000183131.a	ENSGT00940000159472	ENSGT00390000001562	ENSGT00390000000546	ENSGT00940000154663	ENSGT00940000157601	ENSGT00390000001804	ENSGT00940000154258.a #15	ENSGT00950000182981.a #16	ENSGT00940000157014 #18	ENSGT00390000011067.A #19	ENSGT00940000158853 #20	ENSGT00390000014941 #21	ENSGT00530000063829.C #22	ENSGT00730000111114 #23	ENSGT00940000156917 #24	ENSGT00390000004786	ENSGT00940000155458	ENSGT00940000155308	ENSGT00390000007796	ENSGT00940000158442.y	ENSGT00940000155448	ENSGT00940000159708	ENSGT00940000153776.a.b	ENSGT00390000011581	ENSGT00940000156091.b	ENSGT00940000155326.pb	ENSGT00490000043380	ENSGT00940000162174
Eastern brown snake	MODERN SPECIES	8	NECAB3 (ENSPTXG00000007818)	E2F1 (ENSPTXG00000007817)	PXMP4 (ENSPTXG00000007816)	ZNF341 (ENSPTXG00000007815)	CHMP4B (ENSPTXG00000007814)	ENSPTXG00000007812	ENSPTXG00000007811	EIF2S2 (ENSPTXG00000007809)	ASIP (ENSPTXG00000007806) #15	AHCY (ENSPTXG00000007803) #16	ITCH (ENSPTXG00000007800) #18	DYNLRB1 (ENSPTXG00000007798) #19	MAP1LC3A (ENSPTXG00000007795) #20	PIGU (ENSPTXG00000007794) #21	ENSPTXG00000007791	TP53INP2 (ENSPTXG00000007790) #22	NCOA6 (ENSPTXG00000007788) #23	GGT7 (ENSPTXG00000007783) #24	RAB5IF (ENSPTXG00000007780)	ENSPTXG00000007779	ENSPTXG00000007777	ENSPTXG00000007775	ENSPTXG00000007773	AAR2 (ENSPTXG00000007770)	EPB41L1 (ENSPTXG00000007765)	SRSF6 (ENSPTXG00000007762)	L3MBTL1 (ENSPTXG00000007761)	SGK2 (ENSPTXG00000007760)	IFT52 (ENSPTXG00000007726)	MYBL2 (ENSPTXG00000007725)	PTPRT (ENSPTXG00000007607)
Mainland tiger snake	MODERN SPECIES	159	NECAB3 (ENSNSUG00000006812)	E2F1 (ENSNSUG00000006810)	PXMP4 (ENSNSUG00000006808)	ZNF341 (ENSNSUG00000006805)	CHMP4B (ENSNSUG00000006802)	ENSNSUG00000006800	ENSNSUG00000006799	EIF2S2 (ENSNSUG00000006794)	ASIP (ENSNSUG00000006791) #15	AHCY (ENSNSUG00000006790) #16	ITCH (ENSNSUG00000004770) #18	DYNLRB1 (ENSNSUG00000004757) #19	MAP1LC3A (ENSNSUG00000004753) #20	PIGU (ENSNSUG00000004739) #21	ENSNSUG00000004738	TP53INP2 (ENSNSUG00000004733) #22	NCOA6 (ENSNSUG00000004718) #23	GGT7 (ENSNSUG00000004708) #24	RAB5IF (ENSNSUG00000004702)	ENSNSUG00000004699	ENSNSUG00000004694	ENSNSUG00000004693	ENSNSUG00000004692
Blue-lipped sea krait	MODERN SPECIES	4138																TP53INP2 (ENSLLTG00000011868) #22	NCOA6 (ENSLLTG00000011879) #23
Indian cobra	MODERN SPECIES	2	NECAB3 (ENSNNAG00000001130)	E2F1 (ENSNNAG00000001105)	PXMP4 (ENSNNAG00000001074)	ZNF341 (ENSNNAG00000001049)	CHMP4B (ENSNNAG00000001020)	ENSNNAG00000001010	ENSNNAG00000000994	EIF2S2 (ENSNNAG00000000981)	ASIP (ENSNNAG00000000968) #15	AHCY (ENSNNAG00000000953) #16	ITCH (ENSNNAG00000000909) #18	DYNLRB1 (ENSNNAG00000000888) #19	MAP1LC3A (ENSNNAG00000000871) #20	PIGU (ENSNNAG00000000795) #21	ENSNNAG00000000782	TP53INP2 (ENSNNAG00000000774) #22	NCOA6 (ENSNNAG00000000742) #23	GGT7 (ENSNNAG00000002814) #24	RAB5IF (ENSNNAG00000002806)	ENSNNAG00000002801	ENSNNAG00000002796	ENSNNAG00000002784	ENSNNAG00000002776	ENSNNAG00000002771	AAR2 (ENSNNAG00000002767)	EPB41L1 (ENSNNAG00000002751)	SRSF6 (ENSNNAG00000002740)	L3MBTL1 (ENSNNAG00000002690)	SGK2 (ENSNNAG00000002672)	IFT52 (ENSNNAG00000002651)	MYBL2 (ENSNNAG00000002639)
Lizard	MODERN SPECIES	3	ENSACAG00000043994	RALY (ENSACAG00000008983)	ENSACAG00000037938	EIF2S2 (ENSACAG00000009041)	ASIP (ENSACAG00000037981) #15	ENSACAG00000043656	AHCY (ENSACAG00000009113) #16	ENSACAG00000034769	ITCH (ENSACAG00000009222) #18	DYNLRB1 (ENSACAG00000043054) #19	MAP1LC3A (ENSACAG00000009374) #20	ENSACAG00000044135	PIGU (ENSACAG00000009379) #21	ENSACAG00000042586	ENSACAG00000029573	TP53INP2 (ENSACAG00000043363) #22	NCOA6 (ENSACAG00000009455) #23	ENSACAG00000009508 #24	ENSACAG00000009634	ENSACAG00000009714	ENSACAG00000009716	ENSACAG00000042738	ENSACAG00000009733	ENSACAG00000009750	ENSACAG00000028253	ENSACAG00000014335	ENSACAG00000044404	PTPN22 (ENSACAG00000000141)	RSBN1 (ENSACAG00000000150)	PHTF1 (ENSACAG00000000153)	ENSACAG00000000160
Laterata	ANCESTRAL SPECIES	14	ENSGT00950000183131.a	ENSGT00940000159472	ENSGT00390000001562	ENSGT00390000000546	ENSGT00940000154663	ENSGT00940000157601	ENSGT00390000001804	ENSGT00940000154258.a #15	ENSGT00950000182981.a #16	ENSGT00940000157014 #18	ENSGT00390000011067.A #19	ENSGT00940000158853 #20	ENSGT00390000014941 #21	ENSGT00980000199297	ENSGT00940000164556	ENSGT00530000063829.C #22	ENSGT00730000111114 #23	ENSGT00940000156917 #24	ENSGT00940000164912	ENSGT00390000004786	ENSGT00940000155458	ENSGT00940000159849	ENSGT00940000155308	ENSGT00390000007796	ENSGT00960000189067	ENSGT00940000158442	ENSGT00940000155448	ENSGT00940000159708	ENSGT00940000153776.a.b	ENSGT00390000011581	ENSGT00940000156091.b
Common wall lizard	MODERN SPECIES	14	E2F1 (ENSPMRG00000020737)	PXMP4 (ENSPMRG00000020743)	ZNF341 (ENSPMRG00000020759)	CHMP4B (ENSPMRG00000020773)	ENSPMRG00000020778	RALY (ENSPMRG00000020782)	EIF2S2 (ENSPMRG00000020795)	ASIP (ENSPMRG00000020805) #15	ENSPMRG00000020811	AHCY (ENSPMRG00000020815) #16	ITCH (ENSPMRG00000020827) #18	DYNLRB1 (ENSPMRG00000020841) #19	PIGU (ENSPMRG00000020849) #21	MAP1LC3A (ENSPMRG00000020853) #20	ENSPMRG00000020858	TP53INP2 (ENSPMRG00000020864) #22	NCOA6 (ENSPMRG00000020876) #23	GGT7 (ENSPMRG00000020902) #24	ENSPMRG00000020913	RAB5IF (ENSPMRG00000020921)	MYL9 (ENSPMRG00000020929)	ENSPMRG00000020934	DLGAP4 (ENSPMRG00000020941)	ENSPMRG00000020955	AAR2 (ENSPMRG00000020958)	ENSPMRG00000020966	EPB41L1 (ENSPMRG00000020983)	ENSPMRG00000021067	L3MBTL1 (ENSPMRG00000021072)	SGK2 (ENSPMRG00000021090)	IFT52 (ENSPMRG00000021100)
Argentine black and white tegu	MODERN SPECIES	28	ZNF341 (ENSSMRG00000001447)	CHMP4B (ENSSMRG00000001390)	ENSSMRG00000001388	ENSSMRG00000001318	RALY (ENSSMRG00000001280)	EIF2S2 (ENSSMRG00000001247)	ENSSMRG00000001230	ASIP (ENSSMRG00000001224) #15	ENSSMRG00000001217	AHCY (ENSSMRG00000001207) #16	ITCH (ENSSMRG00000001158) #18	DYNLRB1 (ENSSMRG00000001155) #19	MAP1LC3A (ENSSMRG00000001142) #20	PIGU (ENSSMRG00000001122) #21	ENSSMRG00000001103	TP53INP2 (ENSSMRG00000001056) #22	NCOA6 (ENSSMRG00000001004) #23	GGT7 (ENSSMRG00000000974) #24	RAB5IF (ENSSMRG00000000958)	ENSSMRG00000000953	TGIF2 (ENSSMRG00000000944)	DLGAP4 (ENSSMRG00000000897)	AAR2 (ENSSMRG00000000867)	ENSSMRG00000000865	EPB41L1 (ENSSMRG00000000724)	SRSF6 (ENSSMRG00000000722)	L3MBTL1 (ENSSMRG00000000665)	SGK2 (ENSSMRG00000000619)	IFT52 (ENSSMRG00000000581)	MYBL2 (ENSSMRG00000000554)	ENSSMRG00000000475
tuatara	MODERN SPECIES	618											AHCY (ENSSPUG00000008392) #16	ITCH (ENSSPUG00000008370) #18	DYNLRB1 (ENSSPUG00000008358) #19	MAP1LC3A (ENSSPUG00000008352) #20	PIGU (ENSSPUG00000008335) #21	TP53INP2 (ENSSPUG00000008328) #22	NCOA6 (ENSSPUG00000008311) #23	GGT7 (ENSSPUG00000008256) #24	RAB5IF (ENSSPUG00000008245)	MYL9 (ENSSPUG00000008238)	ENSSPUG00000008221	DLGAP4 (ENSSPUG00000008215)	AAR2 (ENSSPUG00000008171)
Archelosauria	ANCESTRAL SPECIES		ENSGT00940000159472	ENSGT00390000001562	ENSGT00390000000546	ENSGT00940000154663	ENSGT00950000182920.b.a.a.c.a.a.a.d	ENSGT00940000157601	ENSGT00390000001804	ENSGT00940000154258.a #15	ENSGT00950000182981.a #16	ENSGT00940000157014 #18	ENSGT00390000011067.A #19	ENSGT00940000158853 #20	ENSGT00390000014941 #21	ENSGT00980000199297	ENSGT00940000164556	ENSGT00530000063829.C #22	ENSGT00730000111114 #23	ENSGT00940000156917 #24	ENSGT00390000004786	ENSGT00940000155458	ENSGT00940000159849	ENSGT00940000155308	ENSGT00390000007796	ENSGT00960000189067	ENSGT00940000158442	ENSGT00940000155448	ENSGT00940000159708	ENSGT00940000153776.a.b	ENSGT00390000011581	ENSGT00940000156091.b	ENSGT00940000155326
Cryptodira	ANCESTRAL SPECIES	7	ENSGT00940000159472	ENSGT00390000001562	ENSGT00390000000546	ENSGT00940000154663	ENSGT00950000182920.b.a.a.c.a.a.a.d	ENSGT00940000157601	ENSGT00390000001804	ENSGT00940000154258.a #15	ENSGT00950000182981.a #16	ENSGT00940000157014 #18	ENSGT00390000011067.A #19	ENSGT00940000158853 #20	ENSGT00390000014941 #21	ENSGT00980000199297	ENSGT00940000164556	ENSGT00530000063829.C #22	ENSGT00730000111114 #23	ENSGT00940000156917 #24	ENSGT00390000004786	ENSGT00940000155458	ENSGT00940000159849	ENSGT00940000155308	ENSGT00390000007796	ENSGT00960000189067	ENSGT00940000158442	ENSGT00940000155448	ENSGT00940000159708	ENSGT00940000153776.a.b	ENSGT00390000011581	ENSGT00940000156091.b	ENSGT00940000155326
Testudinoidea	ANCESTRAL SPECIES	28	ENSGT00940000159472	ENSGT00390000001562	ENSGT00390000000546	ENSGT00940000154663	ENSGT00950000182920.b.a.a.c.a.a.a.d	ENSGT00940000157601	ENSGT00390000001804	ENSGT00940000154258.a #15	ENSGT00950000182981.a #16	ENSGT00940000157014 #18	ENSGT00390000011067.A #19	ENSGT00940000158853 #20	ENSGT00390000014941 #21	ENSGT00980000199297	ENSGT00940000164556	ENSGT00530000063829.C #22	ENSGT00730000111114 #23	ENSGT00940000156917 #24	ENSGT00390000004786	ENSGT00940000155458	ENSGT00940000159849	ENSGT00940000155308	ENSGT00390000007796	ENSGT00960000189067	ENSGT00940000158442	ENSGT00940000155448	ENSGT00940000159708	ENSGT00940000153776.a.b	ENSGT00390000011581	ENSGT00940000156091.b	ENSGT00940000155326
Testudinidae	ANCESTRAL SPECIES	34	ENSGT00940000162922	ENSGT00950000183131.a	ENSGT00940000159472	ENSGT00390000001562	ENSGT00390000000546	ENSGT00940000154663	ENSGT00940000157601	ENSGT00390000001804	ENSGT00940000154258.a #15	ENSGT00950000182981.a #16	ENSGT00940000157014 #18	ENSGT00390000011067.A #19	ENSGT00940000158853 #20	ENSGT00390000014941 #21	ENSGT00980000199297	ENSGT00530000063829.C #22	ENSGT00730000111114 #23	ENSGT00940000156917 #24	ENSGT00390000004786	ENSGT00940000155458	ENSGT00940000159849	ENSGT00940000155308	ENSGT00390000007796	ENSGT00940000158442	ENSGT00940000155448	ENSGT00940000159708	ENSGT00940000153776.a.b	ENSGT00390000011581	ENSGT00940000156091.b	ENSGT00940000155326	ENSGT00490000043380
Goode s thornscrub tortoise	MODERN SPECIES	5	ENSGEVG00005013648	ACTL10 (ENSGEVG00005013631)	NECAB3 (ENSGEVG00005013465)	E2F1 (ENSGEVG00005013271)	PXMP4 (ENSGEVG00005013238)	ZNF341 (ENSGEVG00005013173)	CHMP4B (ENSGEVG00005013137)	RALY (ENSGEVG00005013016)	EIF2S2 (ENSGEVG00005012979)	ASIP (ENSGEVG00005012839) #15	AHCY (ENSGEVG00005012811) #16	ITCH (ENSGEVG00005012721) #18	DYNLRB1 (ENSGEVG00005012686) #19	MAP1LC3A (ENSGEVG00005012664) #20	PIGU (ENSGEVG00005012623) #21	TP53INP2 (ENSGEVG00005012590) #22	NCOA6 (ENSGEVG00005012555) #23	GGT7 (ENSGEVG00005012428) #24	RAB5IF (ENSGEVG00005012385)	MYL9 (ENSGEVG00005012363)	TGIF2 (ENSGEVG00005012334)	ENSGEVG00005012309	ENSGEVG00005012250	AAR2 (ENSGEVG00005012230)	EPB41L1 (ENSGEVG00005012067)	SRSF6 (ENSGEVG00005012031)	L3MBTL1 (ENSGEVG00005011681)	SGK2 (ENSGEVG00005011597)	IFT52 (ENSGEVG00005011567)	MYBL2 (ENSGEVG00005011446)	PTPRT (ENSGEVG00005010423)
Abingdon island giant tortoise	MODERN SPECIES	2721													MAP1LC3A (ENSCABG00000001089) #20	PIGU (ENSCABG00000001045) #21	ENSCABG00000001032	TP53INP2 (ENSCABG00000001015) #22	NCOA6 (ENSCABG00000001002) #23	GGT7 (ENSCABG00000000994) #24	RAB5IF (ENSCABG00000000991)	MYL9 (ENSCABG00000000968)	ENSCABG00000000962	ENSCABG00000000957	ENSCABG00000000950	AAR2 (ENSCABG00000000946)	EPB41L1 (ENSCABG00000000936)	SRSF6 (ENSCABG00000000928)	L3MBTL1 (ENSCABG00000000902)	SGK2 (ENSCABG00000000887)	IFT52 (ENSCABG00000000846)	MYBL2 (ENSCABG00000000835)	PTPRT (ENSCABG00000000308)
Emydidae	ANCESTRAL SPECIES	50	ENSGT00960000191106	ENSGT00950000183131.a	ENSGT00940000159472	ENSGT00390000001562	ENSGT00390000000546	ENSGT00940000154663	ENSGT00950000182920.b.a.a.c.a.a.a.d	ENSGT00940000157601	ENSGT00390000001804	ENSGT00940000154258.a #15	ENSGT00950000182981.a #16	ENSGT00940000157014 #18	ENSGT00390000011067.A #19	ENSGT00940000158853 #20	ENSGT00390000014941 #21	ENSGT00530000063829.C #22	ENSGT00730000111114 #23	ENSGT00940000156917 #24	ENSGT00390000004786	ENSGT00940000155458	ENSGT00940000159849	ENSGT00940000155308	ENSGT00390000007796	ENSGT00960000189067	ENSGT00940000158442	ENSGT00940000155448	ENSGT00940000159708	ENSGT00940000153776.a.b	ENSGT00390000011581	ENSGT00940000156091.b	ENSGT00940000155326
Three-toed box turtle	MODERN SPECIES	108	NECAB3 (ENSTMTG00000018162)	E2F1 (ENSTMTG00000018143)	PXMP4 (ENSTMTG00000018136)	ZNF341 (ENSTMTG00000018098)	CHMP4B (ENSTMTG00000018087)	ENSTMTG00000018045	RALY (ENSTMTG00000018027)	EIF2S2 (ENSTMTG00000018010)	ASIP (ENSTMTG00000017959) #15	AHCY (ENSTMTG00000017923) #16	ITCH (ENSTMTG00000017861) #18	DYNLRB1 (ENSTMTG00000017842) #19	MAP1LC3A (ENSTMTG00000017835) #20	PIGU (ENSTMTG00000017811) #21	ENSTMTG00000017804	TP53INP2 (ENSTMTG00000017776) #22	NCOA6 (ENSTMTG00000017760) #23	GGT7 (ENSTMTG00000017714) #24	RAB5IF (ENSTMTG00000017705)	MYL9 (ENSTMTG00000017696)	ENSTMTG00000017689	ENSTMTG00000017678	ENSTMTG00000017656	AAR2 (ENSTMTG00000017641)	ENSTMTG00000017632	EPB41L1 (ENSTMTG00000017604)	SRSF6 (ENSTMTG00000017588)	L3MBTL1 (ENSTMTG00000016877)	SGK2 (ENSTMTG00000016783)	IFT52 (ENSTMTG00000016766)	MYBL2 (ENSTMTG00000016729)
painted turtle	MODERN SPECIES	700	ENSCPBG00000019184	ENSCPBG00000019182	NECAB3 (ENSCPBG00000019179)	E2F1 (ENSCPBG00000019177)	PXMP4 (ENSCPBG00000019176)	ZNF341 (ENSCPBG00000019174)	CHMP4B (ENSCPBG00000019173)	ENSCPBG00000019171	RALY (ENSCPBG00000019164)	EIF2S2 (ENSCPBG00000019159)	ASIP (ENSCPBG00000019156) #15	AHCY (ENSCPBG00000018709) #16	ITCH (ENSCPBG00000018232) #18	MAP1LC3A (ENSCPBG00000018213) #20	PIGU (ENSCPBG00000018212) #21	TP53INP2 (ENSCPBG00000018211) #22	NCOA6 (ENSCPBG00000018210) #23	GGT7 (ENSCPBG00000018208) #24	RAB5IF (ENSCPBG00000018207)	MYL9 (ENSCPBG00000018206)	TGIF2 (ENSCPBG00000018205)	DLGAP4 (ENSCPBG00000018204)	AAR2 (ENSCPBG00000018203)	EPB41L1 (ENSCPBG00000018201)	SRSF6 (ENSCPBG00000018200)	L3MBTL1 (ENSCPBG00000018198)	SGK2 (ENSCPBG00000018197)	IFT52 (ENSCPBG00000018196)	MYBL2 (ENSCPBG00000018195)	PTPRT (ENSCPBG00000018191)	SLC32A1 (ENSCPBG00000018189)
Chinese turtle	MODERN SPECIES	1313												ENSPSIG00000016958	ENSPSIG00000016912	ENSPSIG00000016883	ERGIC3 (ENSPSIG00000016832)	TP53INP2 (ENSPSIG00000016806) #22	NCOA6 (ENSPSIG00000016753) #23	RAB5IF (ENSPSIG00000016739)	MYL9 (ENSPSIG00000016736)	GGT7 (ENSPSIG00000016663) #24	TGIF2 (ENSPSIG00000016647)	DLGAP4 (ENSPSIG00000016639)	ENSPSIG00000002040	AAR2 (ENSPSIG00000016622)	EPB41L1 (ENSPSIG00000016549)	ENSPSIG00000016546	L3MBTL1 (ENSPSIG00000016444)	SGK2 (ENSPSIG00000016302)	IFT52 (ENSPSIG00000016252)	MYBL2 (ENSPSIG00000016162)	ENSPSIG00000002039
Archosauria	ANCESTRAL SPECIES	13	ENSGT00940000162922	ENSGT00950000183131.a	ENSGT00940000159472	ENSGT00390000001562	ENSGT00390000000546	ENSGT00940000154663	ENSGT00950000182920.b.a.a.c.a.a.a.d	ENSGT00940000157601	ENSGT00390000001804	ENSGT00940000154258.a #15	ENSGT00950000182981.a #16	ENSGT00940000157014 #18	ENSGT00390000011067.A #19	ENSGT00940000158853 #20	ENSGT00390000014941 #21	ENSGT00530000063829.C #22	ENSGT00730000111114 #23	ENSGT00940000156917 #24	ENSGT00390000004786	ENSGT00940000155458	ENSGT00940000159849	ENSGT00940000155308	ENSGT00390000007796	ENSGT00960000189067	ENSGT00940000158442	ENSGT00940000155448	ENSGT00940000159708
Aves	ANCESTRAL SPECIES	16	ENSGT00940000160611	ENSGT00940000155740	ENSGT00390000005315	ENSGT00940000154468	ENSGT00940000164502	ENSGT00940000156477	ENSGT00940000160331	ENSGT00950000182872.f.a.a.b	ENSGT00700000104550.a	ENSGT00940000158986	ENSGT01040000241001	ENSGT00950000183202.a.a	ENSGT00390000013867	ENSGT00940000161648	ENSGT00390000014941 #21	ENSGT00530000063829.C #22	ENSGT00730000111114 #23	ENSGT00940000156917 #24	ENSGT00390000004786	ENSGT00940000155458	ENSGT00940000159849	ENSGT00940000155308	ENSGT00390000007796	ENSGT00960000189067	ENSGT00940000158442	ENSGT00940000155448	ENSGT00940000159708	ENSGT01100000263562.b.a.b	ENSGT00940000164866
Neognathae	ANCESTRAL SPECIES	16	ENSGT00390000005315	ENSGT01100000263958	ENSGT00940000154468	ENSGT00940000164502	ENSGT00940000156477	ENSGT00940000160331	ENSGT00950000182872.f.a.a.b	ENSGT00700000104550.a	ENSGT00940000158986	ENSGT01040000241001	ENSGT00950000183202.a.a	ENSGT00390000013867	ENSGT00940000161648	ENSGT00940000167904	ENSGT00390000014941 #21	ENSGT00530000063829.C #22	ENSGT00730000111114 #23	ENSGT00940000156917 #24	ENSGT00390000004786	ENSGT00940000155458	ENSGT00940000159849	ENSGT00940000155308	ENSGT00390000007796	ENSGT00960000189067	ENSGT00940000158442	ENSGT00940000155448	ENSGT00940000159708	ENSGT01100000263562.b.a.b	ENSGT00940000164866
Neognathae_b	ANCESTRAL SPECIES	17	ENSGT00940000155740	ENSGT00390000005315	ENSGT01100000263958	ENSGT00940000154468	ENSGT00940000164502	ENSGT00940000156477	ENSGT00940000160331	ENSGT00950000182872.f.a.a.b	ENSGT00700000104550.a	ENSGT00940000158986	ENSGT00950000183202.a.a	ENSGT00390000013867	ENSGT00940000161648	ENSGT00940000167904	ENSGT00390000014941 #21	ENSGT00530000063829.C #22	ENSGT00730000111114 #23	ENSGT00940000156917 #24	ENSGT00390000004786	ENSGT00940000155458	ENSGT00940000159849	ENSGT00940000155308	ENSGT00390000007796	ENSGT00940000158442	ENSGT00940000155448	ENSGT00940000159708	ENSGT00940000171155	ENSGT00940000161056.b	ENSGT01100000263562.b.a.b	ENSGT00940000164866
Passeriformes	ANCESTRAL SPECIES	47	ENSGT00940000162210	ENSGT00940000160611	ENSGT00940000155740	ENSGT00390000005315	ENSGT01100000263958	ENSGT00940000154468	ENSGT00940000164502	ENSGT00940000156477	ENSGT00950000182872.f.a.a.b	ENSGT00700000104550.a	ENSGT00940000158986	ENSGT00950000183202.a.a	ENSGT00390000013867	ENSGT00940000167904	ENSGT00390000014941 #21	ENSGT00530000063829.C #22	ENSGT00730000111114 #23	ENSGT00940000156917 #24	ENSGT00390000004786	ENSGT00940000155458	ENSGT00940000159849	ENSGT00940000155308	ENSGT00390000007796	ENSGT00940000158442	ENSGT00940000155448	ENSGT00940000159708
Great tit	MODERN SPECIES	12	CPNE1 (ENSPMJG00000001186)	RBM12 (ENSPMJG00000001256)	NFS1 (ENSPMJG00000001263)	ROMO1 (ENSPMJG00000001282)	ENSPMJG00000001289	RBM39 (ENSPMJG00000001299)	ENSPMJG00000001376	PHF20 (ENSPMJG00000001396)	NDRG3 (ENSPMJG00000001419)	RALGAPB (ENSPMJG00000001470)	CHD6 (ENSPMJG00000001547)	RBL1 (ENSPMJG00000001680)	SAMHD1 (ENSPMJG00000001719)	ENSPMJG00000001731	PIGU (ENSPMJG00000001745) #21	TP53INP2 (ENSPMJG00000001752) #22	NCOA6 (ENSPMJG00000001765) #23	GGT7 (ENSPMJG00000001796) #24	RAB5IF (ENSPMJG00000001808)	MYL9 (ENSPMJG00000001814)	TGIF2 (ENSPMJG00000001823)	DLGAP4 (ENSPMJG00000001839)	AAR2 (ENSPMJG00000001903)	EPB41L1 (ENSPMJG00000001912)	SRSF6 (ENSPMJG00000001950)	L3MBTL1 (ENSPMJG00000001954)	ENSPMJG00000001966	ITCH (ENSPMJG00000001969) #18	DYNLRB1 (ENSPMJG00000001988) #19	MAP1LC3A (ENSPMJG00000001994) #20	ENSPMJG00000002002
Passeriformes_d	ANCESTRAL SPECIES	43	ENSGT00940000160586	ENSGT00940000162210	ENSGT00940000160611	ENSGT00940000155740	ENSGT00390000005315	ENSGT01100000263958	ENSGT00940000154468	ENSGT00940000164502	ENSGT00940000156477	ENSGT00950000182872.f.a.a.b	ENSGT00700000104550.a	ENSGT00940000158986	ENSGT00950000183202.a.a	ENSGT00390000013867	ENSGT00390000014941 #21	ENSGT00530000063829.C #22	ENSGT00730000111114 #23	ENSGT00940000156917 #24	ENSGT00390000004786	ENSGT00940000155458	ENSGT00940000159849	ENSGT00940000155308	ENSGT00390000007796	ENSGT00940000158442	ENSGT00940000155448	ENSGT00940000159708
Passeriformes_g	ANCESTRAL SPECIES	54	ENSGT00940000160586	ENSGT00940000162210	ENSGT00940000160611	ENSGT00940000155740	ENSGT00390000005315	ENSGT01100000263958	ENSGT00940000154468	ENSGT00940000164502	ENSGT00940000156477	ENSGT00950000182872.f.a.a.b	ENSGT00700000104550.a	ENSGT00940000158986	ENSGT00950000183202.a.a	ENSGT00390000013867	ENSGT00390000014941 #21	ENSGT00530000063829.C #22	ENSGT00730000111114 #23	ENSGT00940000156917 #24	ENSGT00390000004786	ENSGT00940000155458	ENSGT00940000159849	ENSGT00940000155308	ENSGT00390000007796	ENSGT00940000158442	ENSGT00940000155448	ENSGT00940000159708	ENSGT00940000171155.d
Passeroidea	ANCESTRAL SPECIES	55	ENSGT00940000160586	ENSGT00940000162210	ENSGT00940000160611	ENSGT00940000155740	ENSGT00390000005315	ENSGT01100000263958	ENSGT00940000154468	ENSGT00940000164502	ENSGT00940000156477	ENSGT00950000182872.f.a.a.b	ENSGT00700000104550.a	ENSGT00940000158986	ENSGT00950000183202.a.a	ENSGT00390000013867	ENSGT00390000014941 #21	ENSGT00530000063829.C #22	ENSGT00730000111114 #23	ENSGT00940000156917 #24	ENSGT00390000004786	ENSGT00940000155458	ENSGT00940000159849	ENSGT00940000155308	ENSGT00390000007796	ENSGT00940000158442	ENSGT00940000155448	ENSGT00940000159708	ENSGT00940000171155.d.a
Zebra finch	MODERN SPECIES	13	ENSTGUG00000029366	RBM12 (ENSTGUG00000003002)	NFS1 (ENSTGUG00000003005)	ROMO1 (ENSTGUG00000003046)	ENSTGUG00000028563	RBM39 (ENSTGUG00000003048)	ENSTGUG00000003078	PHF20 (ENSTGUG00000003083)	NDRG3 (ENSTGUG00000003092)	RALGAPB (ENSTGUG00000003151)	CHD6 (ENSTGUG00000003179)	RBL1 (ENSTGUG00000003231)	SAMHD1 (ENSTGUG00000003280)	ENSTGUG00000003300	PIGU (ENSTGUG00000003310) #21	TP53INP2 (ENSTGUG00000003333) #22	NCOA6 (ENSTGUG00000003336) #23	GGT7 (ENSTGUG00000003352) #24	RAB5IF (ENSTGUG00000003394)	MYL9 (ENSTGUG00000019646)	ENSTGUG00000027480	DLGAP4 (ENSTGUG00000003402)	AAR2 (ENSTGUG00000025845)	EPB41L1 (ENSTGUG00000003444)	SRSF6 (ENSTGUG00000003455)	L3MBTL1 (ENSTGUG00000003474)	ENSTGUG00000003507	ITCH (ENSTGUG00000003516) #18	DYNLRB1 (ENSTGUG00000026456) #19	MAP1LC3A (ENSTGUG00000027468) #20	CEP250 (ENSTGUG00000003580)
Neognathae_c	ANCESTRAL SPECIES	20	ENSGT00940000160611	ENSGT00940000155740	ENSGT00390000005315	ENSGT01100000263958	ENSGT00940000154468	ENSGT00940000164502	ENSGT00940000156477	ENSGT00940000160331	ENSGT00950000182872.f.a.a.b	ENSGT00700000104550.a	ENSGT00940000158986	ENSGT00950000183202.a.a	ENSGT00390000013867	ENSGT00940000161648	ENSGT00390000014941 #21	ENSGT00530000063829.C #22	ENSGT00730000111114 #23	ENSGT00940000156917 #24	ENSGT00390000004786	ENSGT00940000155458	ENSGT00940000159849	ENSGT00940000155308	ENSGT00390000007796	ENSGT00940000158442	ENSGT00940000155448	ENSGT00940000159708	ENSGT00940000171155	ENSGT00940000161056.b	ENSGT01100000263562.b.a.b	ENSGT00940000164866
Kakapo	MODERN SPECIES	5	RBM12 (ENSSHBG00005017618)	NFS1 (ENSSHBG00005017616)	ROMO1 (ENSSHBG00005017611)	ENSSHBG00005017608	RBM39 (ENSSHBG00005017603)	ENSSHBG00005017593	PHF20 (ENSSHBG00005017575)	SLA2 (ENSSHBG00005017565)	NDRG3 (ENSSHBG00005017560)	RALGAPB (ENSSHBG00005017544)	ENSSHBG00005017534	CHD6 (ENSSHBG00005008746)	RBL1 (ENSSHBG00005008287)	SAMHD1 (ENSSHBG00005007243)	PIGU (ENSSHBG00005007086) #21	TP53INP2 (ENSSHBG00005007072) #22	NCOA6 (ENSSHBG00005007034) #23	GGT7 (ENSSHBG00005007000) #24	RAB5IF (ENSSHBG00005006984)	MYL9 (ENSSHBG00005006964)	TGIF2 (ENSSHBG00005006954)	DLGAP4 (ENSSHBG00005006910)	AAR2 (ENSSHBG00005006874)	EPB41L1 (ENSSHBG00005006827)	SRSF6 (ENSSHBG00005006791)	L3MBTL1 (ENSSHBG00005006765)	ENSSHBG00005006465	ENSSHBG00005006392	ENSSHBG00005006367	RPN2 (ENSSHBG00005006337)	ENSSHBG00005006300
Golden eagle	MODERN SPECIES	19	RBM12 (ENSACCG00020004022)	NFS1 (ENSACCG00020004006)	ENSACCG00020003999	ROMO1 (ENSACCG00020003989)	RBM39 (ENSACCG00020003974)	ENSACCG00020003949	PHF20 (ENSACCG00020003907)	SLA2 (ENSACCG00020003882)	NDRG3 (ENSACCG00020003838)	RALGAPB (ENSACCG00020003728)	CHD6 (ENSACCG00020003632)	RBL1 (ENSACCG00020003541)	SAMHD1 (ENSACCG00020003511)	TLDC2 (ENSACCG00020003481)	PIGU (ENSACCG00020003456) #21	TP53INP2 (ENSACCG00020003441) #22	NCOA6 (ENSACCG00020003415) #23	GGT7 (ENSACCG00020003387) #24	RAB5IF (ENSACCG00020003375)	MYL9 (ENSACCG00020003364)	TGIF2 (ENSACCG00020003358)	DLGAP4 (ENSACCG00020003308)	AAR2 (ENSACCG00020003273)	EPB41L1 (ENSACCG00020003187)	SRSF6 (ENSACCG00020003133)	L3MBTL1 (ENSACCG00020003111)	ENSACCG00020003091	ENSACCG00020003061	ENSACCG00020003012	ENSACCG00020002990	ENSACCG00020002964
Galloanserae	ANCESTRAL SPECIES	15	ENSGT00390000005315	ENSGT01100000263958	ENSGT00940000154468	ENSGT00940000164502	ENSGT00940000156477	ENSGT00940000160331	ENSGT00950000182872.f.a.a.b	ENSGT00700000104550.a	ENSGT00940000158986	ENSGT01040000241001	ENSGT00950000183202.a.a	ENSGT00390000013867	ENSGT00940000161648	ENSGT00940000167904	ENSGT00390000014941 #21	ENSGT00530000063829.C #22	ENSGT00730000111114 #23	ENSGT00940000156917 #24	ENSGT00390000004786	ENSGT00940000155458	ENSGT00940000159849	ENSGT00940000155308	ENSGT00390000007796	ENSGT00960000189067	ENSGT00940000158442	ENSGT00940000155448	ENSGT00940000159708	ENSGT01100000263562.b.a.b
Phasianidae	ANCESTRAL SPECIES	15	ENSGT00940000160611	ENSGT00940000155740	ENSGT00390000005315	ENSGT01100000263958	ENSGT00940000154468	ENSGT00940000164502	ENSGT00940000156477	ENSGT00940000160331	ENSGT00950000182872.f.a.a.b	ENSGT00700000104550.a	ENSGT00940000158986	ENSGT00950000183202.a.a	ENSGT00390000013867	ENSGT00940000161648	ENSGT00390000014941 #21	ENSGT00530000063829.C #22	ENSGT00730000111114 #23	ENSGT00940000156917 #24	ENSGT00390000004786	ENSGT00940000155458	ENSGT00940000159849	ENSGT00940000155308	ENSGT00390000007796	ENSGT00960000189067	ENSGT00940000158442	ENSGT00940000155448	ENSGT00940000159708	ENSGT01100000263562.b.a.b
Phasianidae_b	ANCESTRAL SPECIES	15	ENSGT00940000160611	ENSGT00940000155740	ENSGT00390000005315	ENSGT01100000263958	ENSGT00940000154468	ENSGT00940000164502	ENSGT00940000156477	ENSGT00940000160331	ENSGT00950000182872.f.a.a.b	ENSGT00700000104550.a	ENSGT00940000158986	ENSGT00950000183202.a.a	ENSGT00390000013867	ENSGT00940000161648	ENSGT00390000014941 #21	ENSGT00530000063829.C #22	ENSGT00730000111114 #23	ENSGT00940000156917 #24	ENSGT00390000004786	ENSGT00940000155458	ENSGT00940000159849	ENSGT00940000155308	ENSGT00390000007796	ENSGT00940000158442	ENSGT00940000155448	ENSGT00940000159708	ENSGT01100000263562.b.a.b
Chicken	MODERN SPECIES	12	NFS1 (ENSGALG00010022230)	ROMO1 (ENSGALG00010022216)	ENSGALG00010022206	RBM23 (ENSGALG00010022199)	ENSGALG00010021354	PHF20 (ENSGALG00010021881)	ENSGALG00010021860	NDRG3 (ENSGALG00010021795)	RALGAPB (ENSGALG00010021770)	CHD6 (ENSGALG00010024457)	RBL1 (ENSGALG00010024438)	SAMHD1 (ENSGALG00010024424)	TLDC2 (ENSGALG00010024418)	PIGU (ENSGALG00010024412) #21	ENSGALG00010024396	TP53INP2 (ENSGALG00010021676) #22	NCOA6 (ENSGALG00010021627) #23	GGT7 (ENSGALG00010021597) #24	C20H20ORF24 (ENSGALG00010021579)	MYL9 (ENSGALG00010021572)	TGIF2 (ENSGALG00010021561)	DLGAP4 (ENSGALG00010024586)	AAR2 (ENSGALG00010024639)	EPB41L1 (ENSGALG00010024631)	SRSF6 (ENSGALG00010024593)	L3MBTL1 (ENSGALG00010021341)	IGSF1 (ENSGALG00010021327)	ENSGALG00010024046
Turkey	MODERN SPECIES	14	RBM12 (ENSMGAG00000001502)	NFS1 (ENSMGAG00000001556)	ROMO1 (ENSMGAG00000018175)	ENSMGAG00000017897	RBM39 (ENSMGAG00000001509)	ENSMGAG00000001486	PHF20 (ENSMGAG00000001455)	ENSMGAG00000001448	ENSMGAG00000001365	ENSMGAG00000001329	ENSMGAG00000001121	ENSMGAG00000001062	ENSMGAG00000001008	ENSMGAG00000001007	ENSMGAG00000001041 #21	ENSMGAG00000019498 #22	ENSMGAG00000000960 #23	ENSMGAG00000000889 #24	ENSMGAG00000000819	ENSMGAG00000000945	ENSMGAG00000000915	ENSMGAG00000017514	ENSMGAG00000000855	ENSMGAG00000000986	ENSMGAG00000000888	ENSMGAG00000000827	ENSMGAG00000020350	ENSMGAG00000017525	ENSMGAG00000008093	ENSMGAG00000021887
Japanese quail	MODERN SPECIES	12	ENSCJPG00005020516	CPNE1 (ENSCJPG00005020365)	ROMO1 (ENSCJPG00005020357)	NFS1 (ENSCJPG00005020337)	RBM39 (ENSCJPG00005020335)	ENSCJPG00005020327	PHF20 (ENSCJPG00005020315)	ENSCJPG00005020314	NDRG3 (ENSCJPG00005020313)	RALGAPB (ENSCJPG00005020209)	CHD6 (ENSCJPG00005020194)	RBL1 (ENSCJPG00005020193)	SAMHD1 (ENSCJPG00005019634)	ENSCJPG00005019632	PIGU (ENSCJPG00005019631) #21	TP53INP2 (ENSCJPG00005019629) #22	NCOA6 (ENSCJPG00005019628) #23	GGT7 (ENSCJPG00005019627) #24	RAB5IF (ENSCJPG00005019626)	MYL9 (ENSCJPG00005019625)	TGIF2 (ENSCJPG00005019624)	DLGAP4 (ENSCJPG00005019623)	AAR2 (ENSCJPG00005019622)	ENSCJPG00005019621	EPB41L1 (ENSCJPG00005019574)	ENSCJPG00005019573	SRSF6 (ENSCJPG00005019572)	L3MBTL1 (ENSCJPG00005019570)
Anatidae	ANCESTRAL SPECIES	75	ENSGT00940000162210	ENSGT00940000155740	ENSGT00390000005315	ENSGT00940000154468	ENSGT00940000164502	ENSGT00940000156477	ENSGT00940000160331	ENSGT00950000182872.f.a.a.b	ENSGT00700000104550.a	ENSGT00940000158986	ENSGT01040000241001	ENSGT00950000183202.a.a	ENSGT00390000013867	ENSGT00940000167904	ENSGT00390000014941 #21	ENSGT00530000063829.C #22	ENSGT00730000111114 #23	ENSGT00940000156917 #24	ENSGT00390000004786	ENSGT00940000155458	ENSGT00940000159849	ENSGT00940000155308	ENSGT00390000007796	ENSGT00940000158442
Pink-footed goose	MODERN SPECIES	189	ENSABRG00000020115	CPNE1 (ENSABRG00000019553)	NFS1 (ENSABRG00000019375)	ROMO1 (ENSABRG00000019358)	RBM39 (ENSABRG00000019229)	ENSABRG00000019089	PHF20 (ENSABRG00000019015)	SLA2 (ENSABRG00000018917)	NDRG3 (ENSABRG00000018623)	RALGAPB (ENSABRG00000018148)	CHD6 (ENSABRG00000017097)	RBL1 (ENSABRG00000016870)	SAMHD1 (ENSABRG00000016307)	ENSABRG00000016248	PIGU (ENSABRG00000016169) #21	ENSABRG00000016161 #22	NCOA6 (ENSABRG00000016158) #23	GGT7 (ENSABRG00000016155) #24	RAB5IF (ENSABRG00000016152)	MYL9 (ENSABRG00000016150)	TGIF2 (ENSABRG00000016148)	ENSABRG00000016139	ENSABRG00000016132	ENSABRG00000016129	AAR2 (ENSABRG00000016118)	EPB41L1 (ENSABRG00000016098)
Duck	MODERN SPECIES	12	CPNE1 (ENSAPLG00000004619)	NFS1 (ENSAPLG00000003958)	ROMO1 (ENSAPLG00000003945)	RBM39 (ENSAPLG00000003477)	ENSAPLG00000003465	PHF20 (ENSAPLG00000003088)	SLA2 (ENSAPLG00000002986)	NDRG3 (ENSAPLG00000002691)	RALGAPB (ENSAPLG00000002476)	CHD6 (ENSAPLG00000015592)	ENSAPLG00000026060	RBL1 (ENSAPLG00000014817)	SAMHD1 (ENSAPLG00000014604)	ENSAPLG00000014598	PIGU (ENSAPLG00000014171) #21	TP53INP2 (ENSAPLG00000029946) #22	NCOA6 (ENSAPLG00000013856) #23	GGT7 (ENSAPLG00000013413) #24	TGIF2 (ENSAPLG00000022727)	DLGAP4 (ENSAPLG00000012891)	AAR2 (ENSAPLG00000012763)	EPB41L1 (ENSAPLG00000012144)	ENSAPLG00000012085	CEBPB (ENSAPLG00000020861)	PTPN1 (ENSAPLG00000008547)	RIPOR3 (ENSAPLG00000007994)	PARD6B (ENSAPLG00000019880)	ADNP (ENSAPLG00000007870)	DPM1 (ENSAPLG00000007501)	KCNG1 (ENSAPLG00000007454)	NFATC2 (ENSAPLG00000007259)
African ostrich	MODERN SPECIES	764	CPNE1 (ENSSCUG00000011566)	RBM12 (ENSSCUG00000011564)	NFS1 (ENSSCUG00000011561)	ROMO1 (ENSSCUG00000011559)	RBM39 (ENSSCUG00000011557)	ENSSCUG00000011556	PHF20 (ENSSCUG00000011551)	SLA2 (ENSSCUG00000011550)	NDRG3 (ENSSCUG00000011543)	RALGAPB (ENSSCUG00000011538)	CHD6 (ENSSCUG00000011432)	RBL1 (ENSSCUG00000011374)	SAMHD1 (ENSSCUG00000011328)	ENSSCUG00000011314	PIGU (ENSSCUG00000011311) #21	TP53INP2 (ENSSCUG00000011309) #22	NCOA6 (ENSSCUG00000011300) #23	GGT7 (ENSSCUG00000011295) #24	RAB5IF (ENSSCUG00000011294)	MYL9 (ENSSCUG00000011293)	TGIF2 (ENSSCUG00000011290)	ENSSCUG00000011289	ENSSCUG00000011287	AAR2 (ENSSCUG00000011286)	EPB41L1 (ENSSCUG00000011262)	SRSF6 (ENSSCUG00000011250)	L3MBTL1 (ENSSCUG00000011244)	ENSSCUG00000011238	ENSSCUG00000011232	ENSSCUG00000011230
Australian saltwater crocodile	MODERN SPECIES	41	ENSCPRG00005012740	ACTL10 (ENSCPRG00005012747)	E2F1 (ENSCPRG00005012754)	PXMP4 (ENSCPRG00005012758)	ZNF341 (ENSCPRG00005012761)	CHMP4B (ENSCPRG00005012772)	ENSCPRG00005012778	RALY (ENSCPRG00005012788)	EIF2S2 (ENSCPRG00005012797)	ASIP (ENSCPRG00005012814) #15	AHCY (ENSCPRG00005012824) #16	ITCH (ENSCPRG00005012830) #18	DYNLRB1 (ENSCPRG00005012837) #19	MAP1LC3A (ENSCPRG00005012842) #20	PIGU (ENSCPRG00005012848) #21	TP53INP2 (ENSCPRG00005012859) #22	NCOA6 (ENSCPRG00005012865) #23	GGT7 (ENSCPRG00005012885) #24	RAB5IF (ENSCPRG00005012890)	MYL9 (ENSCPRG00005012894)	TGIF2 (ENSCPRG00005012899)	ENSCPRG00005012903	ENSCPRG00005012907	TMEM127 (ENSCPRG00005012912)	CIAO1 (ENSCPRG00005012925)	SNRNP200 (ENSCPRG00005013034)	STARD7 (ENSCPRG00005013522)	NCAPH (ENSCPRG00005013545)	NEURL3 (ENSCPRG00005013552)	TMED4 (ENSCPRG00005013555)	DDX56 (ENSCPRG00005013557)
Anura	ANCESTRAL SPECIES	50	ENSGT01070000255540	ENSGT00950000183131.a.c	ENSGT00950000183131.a.d	ENSGT00940000159472	ENSGT00390000001562	ENSGT00390000000546	ENSGT00940000154663	ENSGT00940000157601	ENSGT00390000001804	ENSGT00940000176173	ENSGT00950000182981.a #16	ENSGT00940000157014 #18	ENSGT00390000011067.A #19	ENSGT00940000158853 #20	ENSGT00390000014941 #21	ENSGT00530000063829.C #22	ENSGT00730000111114 #23	ENSGT00940000156917 #24	ENSGT00390000004786	ENSGT00950000182893.a.a.b	ENSGT00940000158901	ENSGT00940000155006	ENSGT00940000160486	ENSGT00940000156142	ENSGT00940000158405	ENSGT00940000154090.b	ENSGT00720000108866	ENSGT00940000162174	ENSGT00490000043380	ENSGT00940000155326	ENSGT00940000156091.b
Leishan spiny toad	MODERN SPECIES	3	ERGIC3 (ENSLLEG00000023746)	ENSLLEG00000023988	ENSLLEG00000024093	ENSLLEG00000024348	ENSLLEG00000024396	ENSLLEG00000024707	CPNE1 (ENSLLEG00000024748)	ENSLLEG00000025037	AHCY (ENSLLEG00000025193) #16	ITCH (ENSLLEG00000025398) #18	DYNLRB1 (ENSLLEG00000025869) #19	MAP1LC3A (ENSLLEG00000025892) #20	PIGU (ENSLLEG00000025923) #21	ENSLLEG00000026033	ENSLLEG00000026076	TP53INP2 (ENSLLEG00000026114) #22	NCOA6 (ENSLLEG00000026176) #23	ENSLLEG00000026323	GGT7 (ENSLLEG00000026363) #24	ENSLLEG00000026608	ENSLLEG00000026623	ZHX3 (ENSLLEG00000026685)	PLCG1 (ENSLLEG00000026744)	TOP1 (ENSLLEG00000027347)	ENSLLEG00000027427	MAFB (ENSLLEG00000027439)	DHX35 (ENSLLEG00000027484)	ENSLLEG00000027872	ENSLLEG00000027880	PPP1R16B (ENSLLEG00000027912)	ACTR5 (ENSLLEG00000028027)
Frog	MODERN SPECIES	1	cbfa2t2 (ENSXETG00000021431)	ENSXETG00000031462	ENSXETG00000037342	e2f1 (ENSXETG00000046118)	pxmp4 (ENSXETG00000042606)	znf341 (ENSXETG00000021426)	chmp4b (ENSXETG00000043359)	ENSXETG00000045900	raly (ENSXETG00000019514)	asip (ENSXETG00000044164)	eif2s2 (ENSXETG00000019507)	dynlrb1 (ENSXETG00000019475) #18	ahcy (ENSXETG00000019486) #16	map1lc3a (ENSXETG00000019473) #20	pigu (ENSXETG00000019472) #21	tp53inp2 (ENSXETG00000046826) #22	ncoa6 (ENSXETG00000019466) #23	ggt7 (ENSXETG00000019461) #24	rab5if (ENSXETG00000044067)	zhx3 (ENSXETG00000019457)	plcg1 (ENSXETG00000019423)	top1.1 (ENSXETG00000040254)	mafb (ENSXETG00000037195)	ENSXETG00000038526	ENSXETG00000045196	dhx35 (ENSXETG00000012145)	fam83d (ENSXETG00000045492)	ppp1r16b (ENSXETG00000012142)	actr5 (ENSXETG00000012141)	arhgap40 (ENSXETG00000012135)	slc32a1 (ENSXETG00000025497)
Coelacanth	MODERN SPECIES	227												AHCY (ENSLACG00000019061) #16	ITCH (ENSLACG00000019055) #18	MAP1LC3A (ENSLACG00000019052) #20	PIGU (ENSLACG00000019048) #21	TP53INP2 (ENSLACG00000019043) #22	NCOA6 (ENSLACG00000019038) #23	GGT7 (ENSLACG00000019032) #24	RAB5IF (ENSLACG00000019030)	ZHX3 (ENSLACG00000019016)	PLCG1 (ENSLACG00000019007)	IFT52 (ENSLACG00000019001)	MYBL2 (ENSLACG00000018995)	MMP24 (ENSLACG00000018981) #31	EIF6 (ENSLACG00000018972) #32	osgn1 (ENSLACG00000018955)	mtss1 (ENSLACG00000018932)	mych (ENSLACG00000018920)	ROMO1 (ENSLACG00000018912)	ERGIC3 (ENSLACG00000022352)	CYC1 (ENSLACG00000018901)
Actinopterygii	ANCESTRAL SPECIES	66												ENSGT00530000063825.B	ENSGT00940000160217	ENSGT00940000160876	ENSGT00940000161671	ENSGT00530000063829.C #22	ENSGT00730000111114 #23	ENSGT00940000156917 #24	ENSGT00390000018123.b	ENSGT00940000155006	ENSGT00940000158901	ENSGT00950000182893.a.a.b	ENSGT00390000004786	ENSGT00940000158405	ENSGT00940000156142	ENSGT00940000160486	ENSGT00950000182909.b.b.a	ENSGT00530000063956.a	ENSGT01100000263524.B.b.a	ENSGT00940000157210	ENSGT00940000158138
Neopterygii	ANCESTRAL SPECIES	49	ENSGT00950000183029.C	ENSGT00390000007823	ENSGT00940000161109	ENSGT00940000156478	ENSGT00940000164502	ENSGT00940000156477	ENSGT00940000160331	ENSGT00950000182872.f.a.a.b	ENSGT00940000159233 #29	ENSGT00390000018330 #28	ENSGT00940000163461.b	ENSGT00940000160318	ENSGT00390000013764 #26	ENSGT00390000013867	ENSGT00940000154681.b	ENSGT00530000063829.C #22	ENSGT00730000111114 #23	ENSGT00940000156917 #24	ENSGT00390000018123.b	ENSGT00940000155006	ENSGT00940000158901	ENSGT00950000182893.a.a.b	ENSGT00390000004786	ENSGT00940000158405	ENSGT00940000156142	ENSGT00940000160486	ENSGT00950000182909.b.b.a	ENSGT00530000063956.a	ENSGT01100000263524.B.b.a	ENSGT00940000157210	ENSGT00940000158138
Osteoglossocephalai	ANCESTRAL SPECIES	28	ENSGT00390000007823	ENSGT00950000183029.C	ENSGT00940000159151	ENSGT00940000166926	ENSGT00940000164502.a.b	ENSGT00940000156477.d	ENSGT00950000182872.f.a.a.a.b	ENSGT00940000160331	ENSGT00940000159233 #29	ENSGT00390000018330 #28	ENSGT00940000160318.c.b	ENSGT00940000163461.b	ENSGT00390000013764 #26	ENSGT00390000013867	ENSGT00940000154681.b	ENSGT00530000063829.C #22	ENSGT00940000156917.a #24	ENSGT00730000111114 #23	ENSGT00940000155006.e.b.b	ENSGT00940000158901	ENSGT00950000182893.a.a.b.a	ENSGT00390000004786	ENSGT00940000155006.e.a	ENSGT00950000182893.a.a.b.b	ENSGT00940000158405	ENSGT00940000156142	ENSGT00940000160486.c	ENSGT00950000182909.b.b.a	ENSGT00530000063956.a	ENSGT01100000263524.B.b.a.a	ENSGT00940000157210
Clupeocephala	ANCESTRAL SPECIES	53												ENSGT00940000163461.b	ENSGT00390000013764 #26	ENSGT00390000013867	ENSGT00940000154681.b.c	ENSGT00530000063829.C #22	ENSGT00940000156917.a #24	ENSGT00730000111114 #23	ENSGT00940000155006.e.b.b	ENSGT00940000158901	ENSGT00950000182893.a.a.b.a	ENSGT00390000004786	ENSGT00940000156142	ENSGT00940000160486.c	ENSGT00950000182909.b.b.a	ENSGT00530000063956.a	ENSGT01100000263524.B.b.a.a	ENSGT00940000157210	ENSGT00940000158138	ENSGT01030000234633.B.b.a	ENSGT00390000007796
Euteleosteomorpha	ANCESTRAL SPECIES	11							ENSGT00940000156963.a.a	ENSGT00940000164203	ENSGT00390000014570.b	ENSGT00940000164714	ENSGT01070000253775.a.d.a.b.b.h.a	ENSGT00940000156836.b	ENSGT00940000158422.b	ENSGT00390000013867	ENSGT00940000154681.b.c	ENSGT00530000063829.C #22	ENSGT00940000156917.a #24	ENSGT00730000111114 #23	ENSGT00940000155006.e.b.b	ENSGT00940000158901	ENSGT00950000182893.a.a.b.a	ENSGT00390000004786	ENSGT00940000156142	ENSGT00940000160486.c	ENSGT00950000182909.b.b.a	ENSGT00530000063956.a	ENSGT01100000263524.B.b.a.a	ENSGT00940000157210	ENSGT00940000158138	ENSGT01030000234633.B.b.a	ENSGT00390000007796
Protacanthopterygii	ANCESTRAL SPECIES	37						ENSGT00940000163520.A.a.a.a.b.a.a	ENSGT00940000156963.a.a	ENSGT00940000164203	ENSGT00390000014570.b	ENSGT00940000164714	ENSGT01070000253775.a.d.a.b.b.h.a.d	ENSGT00940000156836.b	ENSGT00940000158422.b	ENSGT00390000013867.b	ENSGT00940000154681.b.c	ENSGT00530000063829.C #22	ENSGT00940000156917.a #24	ENSGT00730000111114 #23	ENSGT00940000155006.e.b.b	ENSGT00940000158901	ENSGT00950000182893.a.a.b.a	ENSGT00390000004786	ENSGT00940000156142	ENSGT00940000160486.c	ENSGT00950000182909.b.b.a	ENSGT00530000063956.a	ENSGT01100000263524.B.b.a.a	ENSGT00940000157210	ENSGT00940000158138	ENSGT01030000234633.B.b.a	ENSGT00390000007796
Salmoninae	ANCESTRAL SPECIES	317				ENSGT00970000193381.a.a.c.b.a.b.a	ENSGT01100000263502.A.b.a.a	ENSGT00940000163520.A.a.a.a.b.a.a	ENSGT00940000156963.a.a	ENSGT00940000164203	ENSGT00390000014570.b	ENSGT00940000164714	ENSGT01070000253775.a.d.a.b.b.h.a.d	ENSGT00940000156836.b	ENSGT00940000158422.b	ENSGT00390000013867.b.b	ENSGT00940000154681.b.c	ENSGT00530000063829.C #22	ENSGT00940000156917.a #24	ENSGT00730000111114.e.b #23	ENSGT00940000155006.e.b.b	ENSGT00940000158901	ENSGT00950000182893.a.a.b.a.c	ENSGT00390000004786	ENSGT00940000156142	ENSGT00940000160486.c.a	ENSGT00950000182909.b.b.a.j	ENSGT00530000063956.a.h	ENSGT01100000263524.B.b.a.a	ENSGT00940000157210	ENSGT00940000158138	ENSGT01030000234633.B.b.a.c	ENSGT00390000007796.f
Salmoninae_a	ANCESTRAL SPECIES	26	ENSGT00940000158894	ENSGT00940000158933	ENSGT00940000155766.a	ENSGT00970000193381.a.a.c.b.a.b.a	ENSGT01100000263502.A.b.a.a	ENSGT00940000163520.A.a.a.a.b.a.a	ENSGT00940000156963.a.a	ENSGT00940000164203	ENSGT00390000014570.b	ENSGT00940000164714	ENSGT01070000253775.a.d.a.b.b.h.a.d	ENSGT00940000156836.b	ENSGT00940000158422.b	ENSGT00390000013867.b.b	ENSGT00940000154681.b.c	ENSGT00530000063829.C #22	ENSGT00940000156917.a #24	ENSGT00730000111114.e.b #23	ENSGT00940000155006.e.b.b	ENSGT00940000158901	ENSGT00950000182893.a.a.b.a.c	ENSGT00390000004786	ENSGT00940000156142	ENSGT00940000160486.c.a	ENSGT00950000182909.b.b.a.j	ENSGT00530000063956.a.h	ENSGT01100000263524.B.b.a.a	ENSGT00940000157210	ENSGT00940000158138	ENSGT01030000234633.B.b.a.c	ENSGT00390000007796.f
Oncorhynchus	ANCESTRAL SPECIES	7	ENSGT00940000158933	ENSGT00940000155766.a	ENSGT00970000193381.a.a.c.b.a.b.a.c	ENSGT00970000193381.a.a.c.b.a.b.a.d	ENSGT01100000263502.A.b.a.a	ENSGT00940000163520.A.a.a.a.b.a.a	ENSGT00940000156963.a.a	ENSGT00940000164203	ENSGT00390000014570.b	ENSGT00940000164714	ENSGT01070000253775.a.d.a.b.b.h.a.d	ENSGT00940000156836.b	ENSGT00940000158422.b	ENSGT00390000013867.b.b	ENSGT00940000154681.b.c	ENSGT00530000063829.C #22	ENSGT00940000156917.a #24	ENSGT00730000111114.e.b #23	ENSGT00940000155006.e.b.b	ENSGT00940000158901	ENSGT00950000182893.a.a.b.a.c	ENSGT00390000004786	ENSGT00940000156142	ENSGT00940000160486.c.a	ENSGT00950000182909.b.b.a.j	ENSGT00530000063956.a.h	ENSGT01100000263524.B.b.a.a	ENSGT00940000157210	ENSGT00940000158138	ENSGT01030000234633.B.b.a.c	ENSGT00390000007796.f
Oncorhynchus_a	ANCESTRAL SPECIES	9	ENSGT00940000158894	ENSGT00940000158933	ENSGT00970000193381.a.a.c.b.a.b.a.c	ENSGT00970000193381.a.a.c.b.a.b.a.d	ENSGT01100000263502.A.b.a.a	ENSGT00940000163520.A.a.a.a.b.a.a	ENSGT00940000156963.a.a	ENSGT00940000164203	ENSGT00390000014570.b	ENSGT00940000164714	ENSGT01070000253775.a.d.a.b.b.h.a.d	ENSGT00940000156836.b	ENSGT00940000158422.b	ENSGT00390000013867.b.b	ENSGT00940000154681.b.c	ENSGT00530000063829.C #22	ENSGT00940000156917.a #24	ENSGT00730000111114.e.b #23	ENSGT00940000155006.e.b.b	ENSGT00940000158901	ENSGT00950000182893.a.a.b.a.c	ENSGT00390000004786	ENSGT00940000156142	ENSGT00940000160486.c.a	ENSGT00950000182909.b.b.a.j	ENSGT00530000063956.a.h	ENSGT01100000263524.B.b.a.a	ENSGT00940000157210	ENSGT00940000158138	ENSGT01030000234633.B.b.a.c	ENSGT00550000075016.d.a
Chinook salmon	MODERN SPECIES	14	abt1 (ENSOTSG00005007913)	ENSOTSG00005007912	comta (ENSOTSG00005007911)	CDK16 (ENSOTSG00005007515)	tsr2 (ENSOTSG00005007514)	SRPK3 (ENSOTSG00005003664)	ENSOTSG00005003633	ENSOTSG00005003630	parapinopsina (ENSOTSG00005003628)	ENSOTSG00005003626	KBTBD12 (ENSOTSG00005003623)	ENSOTSG00005003620	samhd1 (ENSOTSG00005003231)	snai1b (ENSOTSG00005003220)	ENSOTSG00005003218	ENSOTSG00005003216 #22	GGT7 (ENSOTSG00005003182) #24	ENSOTSG00005003176 #23	ENSOTSG00005003172 #23	ENSOTSG00005003171	plcg1 (ENSOTSG00005002801)	zhx3b (ENSOTSG00005002752)	rab5if (ENSOTSG00005002751)	dhx35 (ENSOTSG00005002745)	ENSOTSG00005002740	ENSOTSG00005002734	ENSOTSG00005002732	rnf114 (ENSOTSG00005002725)	spata2 (ENSOTSG00005002722)	opn7b (ENSOTSG00005002718)	DNAJC5 (ENSOTSG00005044904)
Coho salmon	MODERN SPECIES	16	ENSOKIG00005013928	ENSOKIG00005013896	parapinopsina (ENSOKIG00005013861)	ENSOKIG00005013825	ENSOKIG00005013785	ENSOKIG00005029231	ENSOKIG00005029211	p4htma (ENSOKIG00005029171)	ENSOKIG00005028612	ENSOKIG00005028461	ENSOKIG00005028426	ENSOKIG00005028417	ENSOKIG00005028410	SAMHD1 (ENSOKIG00005026821)	snai1b (ENSOKIG00005026718)	ENSOKIG00005026703 #22	GGT7 (ENSOKIG00005026380) #24	ENSOKIG00005026316 #23	TOP1 (ENSOKIG00005024944)	plcg1 (ENSOKIG00005024051)	zhx3b (ENSOKIG00005023903)	rab5if (ENSOKIG00005023874)	dhx35 (ENSOKIG00005023781)	ENSOKIG00005023768	mafba (ENSOKIG00005023749)	rnf114 (ENSOKIG00005023727)	spata2 (ENSOKIG00005023715)	opn7b (ENSOKIG00005023706)	ENSOKIG00005023696	ENSOKIG00005023690	ENSOKIG00005023686
Rainbow trout	MODERN SPECIES	7	ENSOMYG00000038825	ENSOMYG00000063469	ENSOMYG00000038839	parapinopsina (ENSOMYG00000038927)	ENSOMYG00000038885	ENSOMYG00000055070	ENSOMYG00000038805	ENSOMYG00000038784	ENSOMYG00000038770	ENSOMYG00000038745	ENSOMYG00000038727	ENSOMYG00000038716	ENSOMYG00000038194	snai1b (ENSOMYG00000038038)	ENSOMYG00000074668	ENSOMYG00000038031 #22	ENSOMYG00000037988 #24	ENSOMYG00000037941 #23	TOP1 (ENSOMYG00000055145)	plcg1 (ENSOMYG00000037662)	zhx3b (ENSOMYG00000037499)	rab5if (ENSOMYG00000037488)	dhx35 (ENSOMYG00000037477)	mafba (ENSOMYG00000037449)	rnf114 (ENSOMYG00000037438)	spata2 (ENSOMYG00000037432)	opn7b (ENSOMYG00000037413)	slc9a8 (ENSOMYG00000035974)	b4galt5 (ENSOMYG00000035822)	ENSOMYG00000059803	ENSOMYG00000035808
Salmo	ANCESTRAL SPECIES	4	ENSGT00940000158894	ENSGT00940000158933	ENSGT00940000155766.a	ENSGT00970000193381.a.a.c.b.a.b.a	ENSGT01100000263502.A.b.a.a	ENSGT00940000163520.A.a.a.a.b.a.a	ENSGT00940000156963.a.a	ENSGT00940000164203	ENSGT00390000014570.b	ENSGT00940000164714	ENSGT01070000253775.a.d.a.b.b.h.a.d	ENSGT00940000156836.b	ENSGT00940000158422.b	ENSGT00390000013867.b.b	ENSGT00940000154681.b.c	ENSGT00530000063829.C #22	ENSGT00940000156917.a #24	ENSGT00730000111114.e.b #23	ENSGT00940000155006.e.b.b	ENSGT00940000158901	ENSGT00950000182893.a.a.b.a.c	ENSGT00390000004786	ENSGT00940000156142	ENSGT00940000160486.c.a	ENSGT00950000182909.b.b.a.j	ENSGT00530000063956.a.h	ENSGT01100000263524.B.b.a.a	ENSGT00940000157210	ENSGT00940000158138	ENSGT01030000234633.B.b.a.c	ENSGT00390000007796.f
River trout	MODERN SPECIES	23	wnt5a (ENSSTUG00000043950)	LRTM1 (ENSSTUG00000043940)	CACNA2D3 (ENSSTUG00000043747)	ENSSTUG00000043727	parapinopsina (ENSSTUG00000043717)	ENSSTUG00000043687	ENSSTUG00000043653	P4HTM (ENSSTUG00000043639)	ENSSTUG00000043437	ENSSTUG00000042974	ENSSTUG00000042944	samhd1 (ENSSTUG00000042468)	ENSSTUG00000042423	samhd1 (ENSSTUG00000042290)	snai1b (ENSSTUG00000042260)	ENSSTUG00000042233 #22	GGT7 (ENSSTUG00000042044) #24	ENSSTUG00000042027 #23	ENSSTUG00000042010 #23	TOP1 (ENSSTUG00000039834)	plcg1 (ENSSTUG00000039112)	zhx3b (ENSSTUG00000039075)	rab5if (ENSSTUG00000039070)	dhx35 (ENSSTUG00000038927)	mafba (ENSSTUG00000038917)	rnf114 (ENSSTUG00000038905)	spata2 (ENSSTUG00000038895)	opn7b (ENSSTUG00000038889)	slc9a8 (ENSSTUG00000037758)	b4galt5 (ENSSTUG00000037499)	EMILIN3 (ENSSTUG00000037491)
Atlantic salmon	MODERN SPECIES	4	ENSSSAG00000004433	ENSSSAG00000102045	ENSSSAG00000077068	ENSSSAG00000024999	ENSSSAG00000077079	ENSSSAG00000086390	ENSSSAG00000077085	ENSSSAG00000086888	ENSSSAG00000110069	ENSSSAG00000077149	ENSSSAG00000077170	ENSSSAG00000089491	ENSSSAG00000088473	ENSSSAG00000090850	snai1b (ENSSSAG00000091370)	ENSSSAG00000084815 #22	ggt7 (ENSSSAG00000004211) #24	ENSSSAG00000004289 #23	TOP1 (ENSSSAG00000004397)	plcg1 (ENSSSAG00000005538)	zhx3 (ENSSSAG00000008706)	rab5if (ENSSSAG00000083008)	dhx35 (ENSSSAG00000008774)	ENSSSAG00000105566	mafba (ENSSSAG00000009538)	rnf114 (ENSSSAG00000077116)	spata2 (ENSSSAG00000009559)	opn7b (ENSSSAG00000009564)	ENSSSAG00000120839	slc9a8 (ENSSSAG00000009646)	b4galt5 (ENSSSAG00000086071)
Huchen	MODERN SPECIES	2147																ENSHHUG00000006674 #22	GGT7 (ENSHHUG00000006688) #24	ENSHHUG00000006756 #23	TOP1 (ENSHHUG00000006775)	plcg1 (ENSHHUG00000006916)	zhx3b (ENSHHUG00000006975)	rab5if (ENSHHUG00000006990)	dhx35 (ENSHHUG00000007003)
Northern pike	MODERN SPECIES	11	ENSELUG00000002823	SLC26A6 (ENSELUG00000002799)	KBTBD12 (ENSELUG00000002782)	SLC26A6 (ENSELUG00000002761)	SLC26A6 (ENSELUG00000002664)	ENSELUG00000002633	samhd1 (ENSELUG00000024763)	samhd1 (ENSELUG00000002615)	samhd1 (ENSELUG00000002066)	samhd1 (ENSELUG00000030154)	samhd1 (ENSELUG00000002378)	ENSELUG00000027778	samhd1 (ENSELUG00000002059)	samhd1 (ENSELUG00000002062)	snai1b (ENSELUG00000002056)	ENSELUG00000002053 #22	GGT7 (ENSELUG00000002047) #24	ENSELUG00000032730 #23	TOP1 (ENSELUG00000002025)	plcg1 (ENSELUG00000002015)	zhx3b (ENSELUG00000001999)	rab5if (ENSELUG00000001992)	dhx35 (ENSELUG00000001988)	mafba (ENSELUG00000001978)	rnf114 (ENSELUG00000001974)	spata2 (ENSELUG00000001970)	opn7b (ENSELUG00000001967)	slc9a8 (ENSELUG00000001964)	b4galt5 (ENSELUG00000001956)	ENSELUG00000028962	aar2 (ENSELUG00000001950)
Acanthomorphata	ANCESTRAL SPECIES	3	ENSGT00950000183119.a.b	ENSGT00950000182852.B.b	ENSGT00950000182958.b.a.a.b	ENSGT00940000155343.a.a	ENSGT00940000158400	ENSGT01100000263502.A.b.a.a	ENSGT00940000156963.a.a	ENSGT00940000164203	ENSGT00390000014570.b	ENSGT00940000164714	ENSGT01070000253775.a.d.a.b.b.h.a	ENSGT00940000156836.b	ENSGT00940000158422.b	ENSGT00390000013867	ENSGT00940000154681.b.c	ENSGT00530000063829.C #22	ENSGT00940000156917.a #24	ENSGT00730000111114 #23	ENSGT00940000155006.e.b.b	ENSGT00940000158901	ENSGT00950000182893.a.a.b.a	ENSGT00390000004786	ENSGT00940000156142	ENSGT00940000160486.c	ENSGT00950000182909.b.b.a	ENSGT00530000063956.a	ENSGT01100000263524.B.b.a.a	ENSGT00940000157210	ENSGT00940000158138	ENSGT01030000234633.B.b.a	ENSGT00390000007796
Euacanthomorphacea	ANCESTRAL SPECIES	2	ENSGT00950000182852.B.b	ENSGT00950000182958.b.a.a.b	ENSGT00940000155343.a.a	ENSGT00940000164736	ENSGT00940000158400	ENSGT01100000263502.A.b.a.a	ENSGT00940000156963.a.a	ENSGT00940000164203	ENSGT00390000014570.b	ENSGT00940000164714	ENSGT01070000253775.a.d.a.b.b.h.a	ENSGT00940000156836.b	ENSGT00940000158422.b	ENSGT00390000013867	ENSGT00940000154681.b.c	ENSGT00530000063829.C #22	ENSGT00940000156917.a #24	ENSGT00730000111114 #23	ENSGT00940000155006.e.b.b	ENSGT00940000158901	ENSGT00950000182893.a.a.b.a	ENSGT00390000004786	ENSGT00940000156142	ENSGT00940000160486.c	ENSGT00950000182909.b.b.a	ENSGT00530000063956.a	ENSGT01100000263524.B.b.a.a	ENSGT00940000157210	ENSGT00940000158138	ENSGT01030000234633.B.b.a	ENSGT00390000007796
Percomorphaceae	ANCESTRAL SPECIES	7	ENSGT00950000182852.B.b	ENSGT00950000182958.b.a.a.b	ENSGT00940000155343.a.a	ENSGT00940000164736	ENSGT00940000158400	ENSGT01100000263502.A.b.a.a	ENSGT00940000156963.a.a	ENSGT00940000164203	ENSGT00390000014570.b	ENSGT00940000164714	ENSGT01070000253775.a.d.a.b.b.h.a	ENSGT00940000156836.b	ENSGT00940000158422.b	ENSGT00390000013867	ENSGT00940000154681.b.c	ENSGT00530000063829.C #22	ENSGT00940000156917.a #24	ENSGT00730000111114 #23	ENSGT00940000155006.e.b.b	ENSGT00940000158901	ENSGT00950000182893.a.a.b.a	ENSGT00390000004786	ENSGT00940000156142	ENSGT00940000160486.c	ENSGT00950000182909.b.b.a	ENSGT00530000063956.a	ENSGT01100000263524.B.b.a.a	ENSGT00940000157210	ENSGT00940000158138	ENSGT01030000234633.B.b.a	ENSGT00390000007796
Percomorphaceae_B	ANCESTRAL SPECIES	6	ENSGT00950000182852.B.b	ENSGT00950000182958.b.a.a.b	ENSGT00940000155343.a.a	ENSGT00940000164736	ENSGT00940000158400	ENSGT01100000263502.A.b.a.a	ENSGT00940000156963.a.a	ENSGT00940000164203	ENSGT00390000014570.b	ENSGT00940000164714	ENSGT01070000253775.a.d.a.b.b.h.a	ENSGT00940000156836.b	ENSGT00940000158422.b	ENSGT00390000013867	ENSGT00940000154681.b.c	ENSGT00530000063829.C #22	ENSGT00940000156917.a #24	ENSGT00730000111114 #23	ENSGT00940000155006.e.b.b	ENSGT00940000158901	ENSGT00950000182893.a.a.b.a	ENSGT00390000004786	ENSGT00940000156142	ENSGT00940000160486.c	ENSGT00950000182909.b.b.a	ENSGT00530000063956.a	ENSGT01100000263524.B.b.a.a	ENSGT00940000157210	ENSGT00940000158138	ENSGT01030000234633.B.b.a	ENSGT00390000007796
Percomorphaceae_C	ANCESTRAL SPECIES	4	ENSGT00950000182958.b.a.a.b	ENSGT00940000155343.a.a	ENSGT00940000164736	ENSGT00940000158400	ENSGT01100000263502.A.b.a.a	ENSGT00940000156963.a.a	ENSGT00390000014570.b	ENSGT00940000164203	ENSGT00940000164714	ENSGT01070000253775.a.d.a.b.b.h.a	ENSGT00940000156836.b	ENSGT00940000158422.b	ENSGT00390000013867	ENSGT01070000253760.b.a.a.b	ENSGT00940000154681.b.c	ENSGT00530000063829.C #22	ENSGT00940000156917.a #24	ENSGT00730000111114 #23	ENSGT00940000155006.e.b.b	ENSGT00940000158901	ENSGT00950000182893.a.a.b.a	ENSGT00390000004786	ENSGT00940000156142	ENSGT00940000160486.c	ENSGT00950000182909.b.b.a	ENSGT00530000063956.a	ENSGT01100000263524.B.b.a.a	ENSGT00940000157210	ENSGT00940000158138	ENSGT01030000234633.B.b.a	ENSGT00390000007796
Percomorphaceae_D	ANCESTRAL SPECIES	4	ENSGT00950000182958.b.a.a.b	ENSGT00940000155343.a.a	ENSGT00940000164736	ENSGT00940000158400	ENSGT01100000263502.A.b.a.a	ENSGT00940000156963.a.a	ENSGT00390000014570.b	ENSGT00940000164203	ENSGT00940000164714	ENSGT01070000253775.a.d.a.b.b.h.a	ENSGT00940000156836.b	ENSGT00940000158422.b	ENSGT00390000013867	ENSGT01070000253760.b.a.a.b	ENSGT00940000154681.b.c	ENSGT00530000063829.C #22	ENSGT00940000156917.a #24	ENSGT00730000111114 #23	ENSGT00940000155006.e.b.b	ENSGT00940000158901	ENSGT00950000182893.a.a.b.a	ENSGT00390000004786	ENSGT00940000156142	ENSGT00940000160486.c	ENSGT00950000182909.b.b.a	ENSGT00530000063956.a	ENSGT01100000263524.B.b.a.a	ENSGT00940000157210	ENSGT00940000158138	ENSGT01030000234633.B.b.a	ENSGT00390000007796
Anabantaria	ANCESTRAL SPECIES	3	ENSGT00950000182852.B.b	ENSGT00950000182958.b.a.a.b	ENSGT00940000155343.a.a	ENSGT00940000158400	ENSGT01100000263502.A.b.a.a	ENSGT00940000156963.a.a	ENSGT00390000014570.b	ENSGT00940000164203	ENSGT00940000164714	ENSGT01070000253775.a.d.a.b.b.h.a	ENSGT00940000156836.b	ENSGT00940000158422.b	ENSGT00390000013867	ENSGT01070000253760.b.a.a.b	ENSGT00940000154681.b.c	ENSGT00530000063829.C #22	ENSGT00940000156917.a #24	ENSGT00730000111114 #23	ENSGT00940000155006.e.b.b	ENSGT00940000158901	ENSGT00950000182893.a.a.b.a	ENSGT00390000004786	ENSGT00940000156142	ENSGT00940000160486.c	ENSGT00950000182909.b.b.a	ENSGT00530000063956.a	ENSGT01100000263524.B.b.a.a	ENSGT00940000157210	ENSGT00940000158138	ENSGT01030000234633.B.b.a	ENSGT00390000007796
Anabantoidei	ANCESTRAL SPECIES	2	ENSGT00950000182958.b.a.a.b	ENSGT00940000155343.a.a	ENSGT00940000158400	ENSGT01100000263502.A.b.a.a	ENSGT00940000156963.a.a	ENSGT00940000164203	ENSGT00390000014570.b	ENSGT00940000164714	ENSGT01070000253775.a.d.a.b.b.h.a.a	ENSGT01070000253775.a.d.a.b.b.h.a.b	ENSGT00940000156836.b	ENSGT00940000158422.b	ENSGT00390000013867	ENSGT01070000253760.b.a.a.b	ENSGT00940000154681.b.c	ENSGT00530000063829.C #22	ENSGT00940000156917.a #24	ENSGT00730000111114 #23	ENSGT00940000155006.e.b.b	ENSGT00940000158901	ENSGT00950000182893.a.a.b.a	ENSGT00390000004786	ENSGT00940000156142	ENSGT00940000160486.c	ENSGT00950000182909.b.b.a	ENSGT00530000063956.a	ENSGT01100000263524.B.b.a.a	ENSGT00940000157210	ENSGT00940000158138	ENSGT01030000234633.B.b.a	ENSGT00390000007796
Climbing perch	MODERN SPECIES	20	ENSATEG00000003704	ENSATEG00000025564	ENSATEG00000003786	ENSATEG00000003834	ENSATEG00000029166	ENSATEG00000027611	ENSATEG00000003856	ENSATEG00000004919	ENSATEG00000026968	ENSATEG00000004700	ENSATEG00000004841	ENSATEG00000028099	ENSATEG00000004860	ENSATEG00000004865	snai1b (ENSATEG00000004944)	ENSATEG00000004950 #22	ENSATEG00000004962 #24	ENSATEG00000005030 #23	TOP1 (ENSATEG00000005046)	plcg1 (ENSATEG00000005101)	zhx3b (ENSATEG00000005265)	rab5if (ENSATEG00000005282)	dhx35 (ENSATEG00000005292)	mafba (ENSATEG00000005372)	rnf114 (ENSATEG00000028341)	spata2 (ENSATEG00000005395)	opn7b (ENSATEG00000005403)	slc9a8 (ENSATEG00000005481)	b4galt5 (ENSATEG00000005499)	ENSATEG00000005545	aar2 (ENSATEG00000005558)
Siamese fighting fish	MODERN SPECIES	18	cttnbp2nlb (ENSBSLG00000015035)	ENSBSLG00000013458	kcnd3 (ENSBSLG00000013133)	ddx20 (ENSBSLG00000012459)	ENSBSLG00000011799	ENSBSLG00000011285	p4htma (ENSBSLG00000011277)	ENSBSLG00000011074	SLC26A6 (ENSBSLG00000010789)	ENSBSLG00000010647	ENSBSLG00000010600	ENSBSLG00000010134	samhd1 (ENSBSLG00000009871)	ENSBSLG00000009793	snai1b (ENSBSLG00000009787)	ENSBSLG00000009729 #22	GGT7 (ENSBSLG00000009620) #24	NCOA6 (ENSBSLG00000009604) #23	TOP1 (ENSBSLG00000008883)	plcg1 (ENSBSLG00000008707)	zhx3b (ENSBSLG00000008669)	rab5if (ENSBSLG00000008663)	dhx35 (ENSBSLG00000008312)	mafba (ENSBSLG00000008224)	rnf114 (ENSBSLG00000008213)	spata2 (ENSBSLG00000008211)	opn7b (ENSBSLG00000008203)	ENSBSLG00000008199	ENSBSLG00000008166	opn7b (ENSBSLG00000008153)	ENSBSLG00000008145
Zig-zag eel	MODERN SPECIES	21	p4htma (ENSMAMG00000009900)	ENSMAMG00000009944	ENSMAMG00000009962	ENSMAMG00000010082	ENSMAMG00000010060	ENSMAMG00000010172	ENSMAMG00000010202	ENSMAMG00000010304	ENSMAMG00000010265	ENSMAMG00000010320	ENSMAMG00000025436	ENSMAMG00000024333	ENSMAMG00000010336	ENSMAMG00000010367	snai1b (ENSMAMG00000010384)	ENSMAMG00000010410 #22	ENSMAMG00000010415 #24	ENSMAMG00000010433 #23	TOP1 (ENSMAMG00000010464)	plcg1 (ENSMAMG00000010510)	zhx3b (ENSMAMG00000010547)	rab5if (ENSMAMG00000025806)	dhx35 (ENSMAMG00000010572)	mafba (ENSMAMG00000010630)	rnf114 (ENSMAMG00000010634)	spata2 (ENSMAMG00000010643)	opn7b (ENSMAMG00000010647)	slc9a8 (ENSMAMG00000010657)	b4galt5 (ENSMAMG00000010674)	ENSMAMG00000010702	aar2 (ENSMAMG00000010708)
Carangaria	ANCESTRAL SPECIES	2	ENSGT00950000182958.b.a.a.b	ENSGT00940000155343.a.a	ENSGT00940000164736	ENSGT00940000158400	ENSGT01100000263502.A.b.a.a	ENSGT00940000156963.a.a	ENSGT00940000164203	ENSGT00390000014570.b	ENSGT00940000164714	ENSGT01070000253775.a.d.a.b.b.h.a	ENSGT00940000156836.b	ENSGT00940000158422.b	ENSGT00390000013867	ENSGT01070000253760.b.a.a.b	ENSGT00940000154681.b.c	ENSGT00530000063829.C #22	ENSGT00940000156917.a #24	ENSGT00730000111114 #23	ENSGT00940000155006.e.b.b	ENSGT00940000158901	ENSGT00950000182893.a.a.b.a	ENSGT00390000004786	ENSGT00940000156142	ENSGT00940000160486.c	ENSGT00950000182909.b.b.a	ENSGT00530000063956.a	ENSGT01100000263524.B.b.a.a	ENSGT00940000157210	ENSGT00940000158138	ENSGT01030000234633.B.b.a	ENSGT00390000007796
Carangaria_A	ANCESTRAL SPECIES	1	ENSGT00950000182958.b.a.a.b	ENSGT00940000155343.a.a	ENSGT00940000164736	ENSGT00940000158400	ENSGT01100000263502.A.b.a.a	ENSGT00940000156963.a.a	ENSGT00390000014570.b	ENSGT00940000164203	ENSGT00940000164714	ENSGT01070000253775.a.d.a.b.b.h.a	ENSGT00940000156836.b	ENSGT00940000158422.b	ENSGT00390000013867	ENSGT01070000253760.b.a.a.b	ENSGT00940000154681.b.c	ENSGT00530000063829.C #22	ENSGT00940000156917.a #24	ENSGT00730000111114 #23	ENSGT00940000155006.e.b.b	ENSGT00940000158901	ENSGT00950000182893.a.a.b.a	ENSGT00390000004786	ENSGT00940000156142	ENSGT00940000160486.c	ENSGT00950000182909.b.b.a	ENSGT00530000063956.a	ENSGT01100000263524.B.b.a.a	ENSGT00940000157210	ENSGT00940000158138	ENSGT01030000234633.B.b.a	ENSGT00390000007796
Barramundi perch	MODERN SPECIES	136	ENSLCAG00010020633	kcnd3 (ENSLCAG00010021032)	ddx20 (ENSLCAG00010021048)	parapinopsina (ENSLCAG00010021061)	ENSLCAG00010021124	p4htma (ENSLCAG00010021255)	ENSLCAG00010021257	ENSLCAG00010021263	SLC26A6 (ENSLCAG00010021282)	KBTBD12 (ENSLCAG00010021319)	ENSLCAG00010021328	ENSLCAG00010021361	samhd1 (ENSLCAG00010021453)	ENSLCAG00010021462	snai1b (ENSLCAG00010021464)	ENSLCAG00010021466 #22	GGT7 (ENSLCAG00010021468) #24	NCOA6 (ENSLCAG00010021474) #23	TOP1 (ENSLCAG00010021519)	plcg1 (ENSLCAG00010021637)	zhx3b (ENSLCAG00010021690)	rab5if (ENSLCAG00010021694)	dhx35 (ENSLCAG00010021718)	mafba (ENSLCAG00010021799)	rnf114 (ENSLCAG00010021800)	spata2 (ENSLCAG00010021803)	opn7b (ENSLCAG00010021805)
Seriola	ANCESTRAL SPECIES	8	ENSGT00940000155343.a.a	ENSGT00940000164736	ENSGT00940000158400	ENSGT01100000263502.A.b.a.a	ENSGT00940000156963.a.a	ENSGT00940000164203	ENSGT00390000014570.b	ENSGT00940000164714	ENSGT01070000253775.a.d.a.b.b.h.a	ENSGT00940000156836.b	ENSGT00940000158422.b	ENSGT00390000013867.db.a	ENSGT00390000013867.eb	ENSGT01070000253760.b.a.a.b	ENSGT00940000154681.b.c	ENSGT00530000063829.C #22	ENSGT00940000156917.a #24	ENSGT00730000111114 #23	ENSGT00940000155006.e.b.b	ENSGT00940000158901	ENSGT00950000182893.a.a.b.a	ENSGT00390000004786	ENSGT00940000156142	ENSGT00940000160486.c	ENSGT00950000182909.b.b.a	ENSGT00530000063956.a	ENSGT01100000263524.B.b.a.a	ENSGT00940000157210	ENSGT00940000158138	ENSGT01030000234633.B.b.a	ENSGT00390000007796
Greater amberjack	MODERN SPECIES	24											ENSSDUG00000017314	samhd1 (ENSSDUG00000017287)	ENSSDUG00000017268	ENSSDUG00000017256	snai1b (ENSSDUG00000017250)	ENSSDUG00000017227 #22	GGT7 (ENSSDUG00000017185) #24	ENSSDUG00000017145 #23	TOP1 (ENSSDUG00000017111)	plcg1 (ENSSDUG00000017063)	zhx3b (ENSSDUG00000017041)	rab5if (ENSSDUG00000017026)	dhx35 (ENSSDUG00000016954)	mafba (ENSSDUG00000016930)	rnf114 (ENSSDUG00000016912)	spata2 (ENSSDUG00000016901)	opn7b (ENSSDUG00000016848)
Yellowtail amberjack	MODERN SPECIES	3093	kcnd3 (ENSSLDG00000000468)	ENSSLDG00000000451	ddx20 (ENSSLDG00000000437)	parapinopsina (ENSSLDG00000000286)	ENSSLDG00000000259	ENSSLDG00000000223	P4HTM (ENSSLDG00000000213)	ENSSLDG00000000099	SLC26A6 (ENSSLDG00000025374)	KBTBD12 (ENSSLDG00000025372)	ENSSLDG00000025370	ENSSLDG00000025367	samhd1 (ENSSLDG00000025364)	ENSSLDG00000025361	snai1b (ENSSLDG00000025359)	ENSSLDG00000025358 #22	GGT7 (ENSSLDG00000025350) #24	ENSSLDG00000025349 #23	TOP1 (ENSSLDG00000025343)	plcg1 (ENSSLDG00000025335)	zhx3b (ENSSLDG00000025332)	rab5if (ENSSLDG00000025331)	dhx35 (ENSSLDG00000025317)	mafba (ENSSLDG00000025314)	rnf114 (ENSSLDG00000025310)	spata2 (ENSSLDG00000025308)	opn7b (ENSSLDG00000025305)	slc9a8 (ENSSLDG00000025299)	b4galt5 (ENSSLDG00000025296)	EMILIN3 (ENSSLDG00000025294)	aar2 (ENSSLDG00000025293)
Pleuronectoidei	ANCESTRAL SPECIES	71								ENSGT00940000164203	ENSGT00390000014570.b	ENSGT00940000164714	ENSGT01070000253775.a.d.a.b.b.h.a	ENSGT00940000156836.b	ENSGT00940000158422.b	ENSGT00390000013867	ENSGT00940000154681.b.c	ENSGT00530000063829.C #22	ENSGT00940000156917.a #24	ENSGT00730000111114 #23	ENSGT00940000155006.e.b.b	ENSGT00940000158901	ENSGT00950000182893.a.a.b.a	ENSGT00390000004786	ENSGT00940000156142	ENSGT00940000160486.c	ENSGT00950000182909.b.b.a	ENSGT00530000063956.a	ENSGT01100000263524.B.b.a.a	ENSGT00940000157210	ENSGT00940000158138	ENSGT01030000234633.B.b.a	ENSGT00390000007796
Tongue sole	MODERN SPECIES	1	rpl32 (ENSCSEG00000021045)	ssuh2rs1 (ENSCSEG00000021044)	DCAF1 (ENSCSEG00000021043)	DOCK3 (ENSCSEG00000021042)	pcbp4 (ENSCSEG00000021041)	DAG1 (ENSCSEG00000021039)	ENSCSEG00000021037	ENSCSEG00000021036	AMIGO3 (ENSCSEG00000021034)	ENSCSEG00000021031	p4htma (ENSCSEG00000021030)	ENSCSEG00000021028	SLC26A6 (ENSCSEG00000021027)	samhd1 (ENSCSEG00000021024)	snai1b (ENSCSEG00000021022)	ENSCSEG00000021021 #22	GGT7 (ENSCSEG00000021018) #24	ENSCSEG00000021017 #23	ENSCSEG00000021013	ENSCSEG00000021012	ENSCSEG00000021010	zhx3b (ENSCSEG00000021007)	rab5if (ENSCSEG00000021005)	dhx35 (ENSCSEG00000021003)	mafba (ENSCSEG00000021002)	rnf114 (ENSCSEG00000021001)	spata2 (ENSCSEG00000021000)	slc9a8 (ENSCSEG00000020997)	b4galt5 (ENSCSEG00000020993)	EMILIN3 (ENSCSEG00000020992)	aar2 (ENSCSEG00000020991)
Turbot	MODERN SPECIES	2	ENSSMAG00000009334	ENSSMAG00000009328	ENSSMAG00000009297	ENSSMAG00000009280	ENSSMAG00000009155	ENSSMAG00000009132	ENSSMAG00000009105	p4htma (ENSSMAG00000009093)	ENSSMAG00000009025	ENSSMAG00000008990	ENSSMAG00000008964	ENSSMAG00000008945	ENSSMAG00000030879	ENSSMAG00000008850	snai1b (ENSSMAG00000008834)	ENSSMAG00000008815 #22	ENSSMAG00000008762 #24	ENSSMAG00000008685 #23	TOP1 (ENSSMAG00000008650)	plcg1 (ENSSMAG00000008551)	zhx3b (ENSSMAG00000008524)	rab5if (ENSSMAG00000008502)	dhx35 (ENSSMAG00000008419)	mafba (ENSSMAG00000008395)	rnf114 (ENSSMAG00000008383)	spata2 (ENSSMAG00000032305)	opn7b (ENSSMAG00000037335)	slc9a8 (ENSSMAG00000008304)	b4galt5 (ENSSMAG00000008219)	ENSSMAG00000008194	aar2 (ENSSMAG00000008182)
Eupercaria	ANCESTRAL SPECIES	4	ENSGT00950000182958.b.a.a.b	ENSGT00940000155343.a.a	ENSGT00940000164736	ENSGT00940000158400	ENSGT01100000263502.A.b.a.a	ENSGT00940000156963.a.a	ENSGT00390000014570.b	ENSGT00940000164203	ENSGT00940000164714	ENSGT01070000253775.a.d.a.b.b.h.a	ENSGT00940000156836.b	ENSGT00940000158422.b	ENSGT00390000013867	ENSGT01070000253760.b.a.a.b	ENSGT00940000154681.b.c	ENSGT00530000063829.C #22	ENSGT00940000156917.a #24	ENSGT00730000111114 #23	ENSGT00940000155006.e.b.b	ENSGT00940000158901	ENSGT00950000182893.a.a.b.a	ENSGT00390000004786	ENSGT00940000156142	ENSGT00940000160486.c	ENSGT00950000182909.b.b.a	ENSGT00530000063956.a	ENSGT01100000263524.B.b.a.a	ENSGT00940000157210	ENSGT00940000158138	ENSGT01030000234633.B.b.a	ENSGT00390000007796
Tetraodontidae	ANCESTRAL SPECIES	2	ENSGT00950000182958.b.a.a.b	ENSGT00950000182958.b.b	ENSGT00940000155343.a.a	ENSGT00940000164736	ENSGT00940000158400	ENSGT01100000263502.A.b.a.a	ENSGT00940000156963.a.a	ENSGT00390000014570.b	ENSGT00940000164203	ENSGT00940000164714	ENSGT01070000253775.a.d.a.b.b.h.a	ENSGT00940000156836.b	ENSGT00940000158422.b	ENSGT00390000013867	ENSGT00940000154681.b.c	ENSGT00530000063829.C #22	ENSGT00940000156917.a #24	ENSGT00730000111114 #23	ENSGT00940000155006.e.b.b	ENSGT00940000158901	ENSGT00950000182893.a.a.b.a	ENSGT00390000004786	ENSGT00940000156142	ENSGT00940000160486.c	ENSGT00950000182909.b.b.a	ENSGT00530000063956.a	ENSGT01100000263524.B.b.a.a	ENSGT00940000157210	ENSGT00940000158138	ENSGT01030000234633.B.b.a	ENSGT00390000007796
Fugu	MODERN SPECIES	15	ddx20 (ENSTRUG00000023712)	parapinopsina (ENSTRUG00000006524)	ENSTRUG00000006166	p4htma (ENSTRUG00000022821)	ENSTRUG00000005983	ENSTRUG00000005480	SLC26A6 (ENSTRUG00000003313)	KBTBD12 (ENSTRUG00000031116)	ENSTRUG00000020777	p4htma (ENSTRUG00000027605)	ENSTRUG00000026345	ENSTRUG00000027974	KBTBD12 (ENSTRUG00000031674)	samhd1 (ENSTRUG00000027672)	snai1b (ENSTRUG00000000419)	ENSTRUG00000024255 #22	GGT7 (ENSTRUG00000000439) #24	NCOA6 (ENSTRUG00000031596) #23	TOP1 (ENSTRUG00000000575)	plcg1 (ENSTRUG00000000710)	zhx3b (ENSTRUG00000000835)	rab5if (ENSTRUG00000023756)	dhx35 (ENSTRUG00000001011)	mafba (ENSTRUG00000025028)	rnf114 (ENSTRUG00000023221)	spata2 (ENSTRUG00000025144)	opn7b (ENSTRUG00000001427)	slc9a8 (ENSTRUG00000001576)	b4galt5 (ENSTRUG00000028184)	ENSTRUG00000002445	aar2 (ENSTRUG00000002631)
Eupecaria_A	ANCESTRAL SPECIES	4	ENSGT00950000182958.b.a.a.b	ENSGT00940000155343.a.a	ENSGT00940000164736	ENSGT00940000158400	ENSGT01100000263502.A.b.a.a	ENSGT00940000156963.a.a	ENSGT00940000164203	ENSGT00390000014570.b	ENSGT00940000164714	ENSGT01070000253775.a.d.a.b.b.h.a	ENSGT00940000156836.b	ENSGT00940000158422.b	ENSGT00390000013867	ENSGT01070000253760.b.a.a.b	ENSGT00940000154681.b.c	ENSGT00530000063829.C #22	ENSGT00940000156917.a #24	ENSGT00730000111114 #23	ENSGT00940000155006.e.b.b	ENSGT00940000158901	ENSGT00950000182893.a.a.b.a	ENSGT00390000004786	ENSGT00940000156142	ENSGT00940000160486.c	ENSGT00950000182909.b.b.a	ENSGT00530000063956.a	ENSGT01100000263524.B.b.a.a	ENSGT00940000157210	ENSGT00940000158138	ENSGT01030000234633.B.b.a	ENSGT00390000007796
Ballan wrasse	MODERN SPECIES	227											ENSLBEG00000007087	ogfr (ENSLBEG00000007068)	kcnk15 (ENSLBEG00000007037)	CDH4 (ENSLBEG00000006989)	snai1b (ENSLBEG00000006963)	ENSLBEG00000006946 #22	GGT7 (ENSLBEG00000006889) #24	ENSLBEG00000006855 #23	TOP1 (ENSLBEG00000006737)	plcg1 (ENSLBEG00000006555)	zhx3b (ENSLBEG00000006486)	rab5if (ENSLBEG00000006459)	dhx35 (ENSLBEG00000006365)	mafba (ENSLBEG00000006331)	rnf114 (ENSLBEG00000006315)	spata2 (ENSLBEG00000006291)
Eupecaria_B	ANCESTRAL SPECIES	5	ENSGT00950000182958.b.a.a.b	ENSGT00940000155343.a.a	ENSGT00940000164736	ENSGT00940000158400	ENSGT01100000263502.A.b.a.a	ENSGT00940000156963.a.a	ENSGT00940000164203	ENSGT00390000014570.b	ENSGT00940000164714	ENSGT01070000253775.a.d.a.b.b.h.a	ENSGT00940000156836.b	ENSGT00940000158422.b	ENSGT00390000013867	ENSGT01070000253760.b.a.a.b	ENSGT00940000154681.b.c	ENSGT00530000063829.C #22	ENSGT00940000156917.a #24	ENSGT00730000111114 #23	ENSGT00940000155006.e.b.b	ENSGT00940000158901	ENSGT00950000182893.a.a.b.a	ENSGT00390000004786	ENSGT00940000156142	ENSGT00940000160486.c	ENSGT00950000182909.b.b.a	ENSGT00530000063956.a	ENSGT01100000263524.B.b.a.a	ENSGT00940000157210	ENSGT00940000158138	ENSGT01030000234633.B.b.a	ENSGT00390000007796
Perciformes	ANCESTRAL SPECIES	4	ENSGT00950000182852.B.b	ENSGT00950000182958.b.a.a.b	ENSGT00940000155343.a.a	ENSGT00940000158400	ENSGT01100000263502.A.b.a.a	ENSGT00940000156963.a.a	ENSGT00390000014570.b	ENSGT00940000164203	ENSGT00940000164714	ENSGT01070000253775.a.d.a.b.b.h.a	ENSGT00940000156836.b	ENSGT00940000158422.b	ENSGT00390000013867	ENSGT01070000253760.b.a.a.b	ENSGT00940000154681.b.c	ENSGT00530000063829.C #22	ENSGT00940000156917.a #24	ENSGT00730000111114 #23	ENSGT00940000155006.e.b.b	ENSGT00940000158901	ENSGT00950000182893.a.a.b.a	ENSGT00390000004786	ENSGT00940000156142	ENSGT00940000160486.c	ENSGT00950000182909.b.b.a	ENSGT00530000063956.a	ENSGT01100000263524.B.b.a.a	ENSGT00940000157210	ENSGT00940000158138	ENSGT01030000234633.B.b.a	ENSGT00390000007796
Cottioidei	ANCESTRAL SPECIES	2														ENSGT00390000013867	ENSGT00940000154681.b.c	ENSGT00530000063829.C #22	ENSGT00940000156917.a #24	ENSGT00730000111114 #23	ENSGT00940000155006.e.b.b	ENSGT00940000158901	ENSGT00950000182893.a.a.b.a	ENSGT00940000158138	ENSGT01030000234633.B.b.a	ENSGT00390000007796	ENSGT00550000075016	ENSGT00390000008161.a.a.a.b	ENSGT00940000159165	ENSGT01020000230412.B.b.b.b	ENSGT00940000158060	ENSGT00940000156172.a	ENSGT00970000193593
Lumpfish	MODERN SPECIES	22	ENSCLMG00005017751	ENSCLMG00005017746	ENSCLMG00005017745	abcd1 (ENSCLMG00005017334)	PLXNB3 (ENSCLMG00005016945)	SRPK3 (ENSCLMG00005013236)	tsr2 (ENSCLMG00005013178)	ENSCLMG00005013176	GRM6 (ENSCLMG00005013175)	abt1 (ENSCLMG00005013173)	rad51c (ENSCLMG00005013172)	CDK16 (ENSCLMG00005012987)	ENSCLMG00005012971	samhd1 (ENSCLMG00005011739)	snai1b (ENSCLMG00005011734)	TP53INP2 (ENSCLMG00005011732) #22	GGT7 (ENSCLMG00005011681) #24	ENSCLMG00005011680 #23	TOP1 (ENSCLMG00005011678)	plcg1 (ENSCLMG00005010570)	zhx3b (ENSCLMG00005010553)	b4galt5 (ENSCLMG00005010144)	EMILIN3 (ENSCLMG00005010141)	aar2 (ENSCLMG00005010140)	prpf6 (ENSCLMG00005010125)	SAMD10 (ENSCLMG00005010106)	ENSCLMG00005010103	ZNF512B (ENSCLMG00005010033)	ENSCLMG00005010032	UCKL1 (ENSCLMG00005010031)	opn7b (ENSCLMG00005010030)
Perciformes_a	ANCESTRAL SPECIES	2	ENSGT00950000182852.B.b	ENSGT00950000182958.b.a.a.b	ENSGT00940000155343.a.a	ENSGT00940000158400	ENSGT01100000263502.A.b.a.a	ENSGT00940000156963.a.a	ENSGT00940000164203	ENSGT00390000014570.b	ENSGT00940000164714	ENSGT01070000253775.a.d.a.b.b.h.a	ENSGT00940000156836.b	ENSGT00940000158422.b	ENSGT00390000013867	ENSGT01070000253760.b.a.a.b	ENSGT00940000154681.b.c	ENSGT00530000063829.C #22	ENSGT00940000156917.a #24	ENSGT00730000111114 #23	ENSGT00940000155006.e.b.b	ENSGT00940000158901	ENSGT00950000182893.a.a.b.a	ENSGT00390000004786	ENSGT00940000156142	ENSGT00940000160486.c	ENSGT00950000182909.b.b.a	ENSGT00530000063956.a	ENSGT01100000263524.B.b.a.a	ENSGT00940000157210	ENSGT00940000158138	ENSGT01030000234633.B.b.a	ENSGT00390000007796
Channel bull blenny	MODERN SPECIES	21	ENSCGOG00000001910	ENSCGOG00000001578	kcnd3 (ENSCGOG00000001568)	ddx20 (ENSCGOG00000001557)	parapinopsina (ENSCGOG00000001556)	ENSCGOG00000000929	ENSCGOG00000000878	p4htma (ENSCGOG00000000877)	ENSCGOG00000000418	SLC26A6 (ENSCGOG00000000259)	KBTBD12 (ENSCGOG00000000147)	ENSCGOG00000000132	ENSCGOG00000000116	samhd1 (ENSCGOG00000022385)	snai1b (ENSCGOG00000022367)	ENSCGOG00000022366 #22	GGT7 (ENSCGOG00000022320) #24	NCOA6 (ENSCGOG00000022309) #23	TOP1 (ENSCGOG00000022182)	plcg1 (ENSCGOG00000021047)	zhx3b (ENSCGOG00000021012)	ENSCGOG00000021011	rab5if (ENSCGOG00000021010)	dhx35 (ENSCGOG00000020936)	mafba (ENSCGOG00000020927)	rnf114 (ENSCGOG00000020922)	spata2 (ENSCGOG00000020916)	opn7b (ENSCGOG00000020911)	slc9a8 (ENSCGOG00000020589)	b4galt5 (ENSCGOG00000019983)	EMILIN3 (ENSCGOG00000019958)
Pike perch	MODERN SPECIES	31	cttnbp2nlb (ENSSLUG00000017270)	ENSSLUG00000017463	kcnd3 (ENSSLUG00000020215)	ddx20 (ENSSLUG00000020230)	parapinopsina (ENSSLUG00000020269)	ENSSLUG00000020353	p4htma (ENSSLUG00000021330)	ENSSLUG00000021336	ENSSLUG00000021444	ENSSLUG00000022887	KBTBD12 (ENSSLUG00000022930)	ENSSLUG00000001511	samhd1 (ENSSLUG00000001794)	ENSSLUG00000002406	snai1b (ENSSLUG00000002409)	ENSSLUG00000002412 #22	GGT7 (ENSSLUG00000002432) #24	NCOA6 (ENSSLUG00000002497) #23	TOP1 (ENSSLUG00000002565)	plcg1 (ENSSLUG00000002779)	zhx3b (ENSSLUG00000003989)	rab5if (ENSSLUG00000003996)	dhx35 (ENSSLUG00000004014)	mafba (ENSSLUG00000004041)	rnf114 (ENSSLUG00000004051)	spata2 (ENSSLUG00000004060)	opn7b (ENSSLUG00000004065)	ENSSLUG00000004073	ENSSLUG00000004082	slc9a8 (ENSSLUG00000004133)	b4galt5 (ENSSLUG00000004812)
Eupecaria_C	ANCESTRAL SPECIES	5	ENSGT00950000182852.B.b	ENSGT00950000182958.b.a.a.b	ENSGT00940000155343.a.a	ENSGT00940000158400	ENSGT01100000263502.A.b.a.a	ENSGT00940000156963.a.a	ENSGT00940000164203	ENSGT00390000014570.b	ENSGT00940000164714	ENSGT01070000253775.a.d.a.b.b.h.a	ENSGT00940000156836.b	ENSGT00940000158422.b	ENSGT00390000013867	ENSGT01070000253760.b.a.a.b	ENSGT00940000154681.b.c	ENSGT00530000063829.C #22	ENSGT00940000156917.a #24	ENSGT00730000111114 #23	ENSGT00940000155006.e.b.b	ENSGT00940000158901	ENSGT00950000182893.a.a.b.a	ENSGT00390000004786	ENSGT00940000156142	ENSGT00940000160486.c	ENSGT00950000182909.b.b.a	ENSGT00530000063956.a	ENSGT01100000263524.B.b.a.a	ENSGT00940000157210	ENSGT00940000158138	ENSGT01030000234633.B.b.a	ENSGT00390000007796
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	15	ENSGT00950000182852.B.b	ENSGT00950000182958.b.a.a.b	ENSGT00940000155343.a.a	ENSGT00940000158400	ENSGT01100000263502.A.b.a.a	ENSGT00940000156963.a.a	ENSGT00940000164203	ENSGT00390000014570.b	ENSGT00940000164714	ENSGT01070000253775.a.d.a.b.b.h.a	ENSGT00940000156836.b	ENSGT00940000158422.b	ENSGT00390000013867	ENSGT01070000253760.b.a.a.b	ENSGT00940000154681.b.c	ENSGT00530000063829.C #22	ENSGT00940000156917.a #24	ENSGT00730000111114 #23	ENSGT00940000155006.e.b.b	ENSGT00940000158901	ENSGT00950000182893.a.a.b.a	ENSGT00390000004786	ENSGT00940000156142	ENSGT00940000160486.c	ENSGT00950000182909.b.b.a	ENSGT00530000063956.a	ENSGT01100000263524.B.b.a.a	ENSGT00940000157210	ENSGT00940000158138	ENSGT01030000234633.B.b.a	ENSGT00390000007796
Large yellow croaker	MODERN SPECIES	487	ENSLCRG00005005649	KLHL10 (ENSLCRG00005005658)	ENSLCRG00005005659	kif5aa (ENSLCRG00005005717)	ENSLCRG00005012443	ENSLCRG00005012445	stac3 (ENSLCRG00005012448)	ENSLCRG00005012455	prkar2aa (ENSLCRG00005012464)	mgll (ENSLCRG00005012466)	SLC26A6 (ENSLCRG00005012484)	ENSLCRG00005013025	samhd1 (ENSLCRG00005013032)	ENSLCRG00005013871	snai1b (ENSLCRG00005013873)	ENSLCRG00005013875 #22	GGT7 (ENSLCRG00005013880) #24	NCOA6 (ENSLCRG00005013915) #23	TOP1 (ENSLCRG00005013921)	plcg1 (ENSLCRG00005014782)	zhx3b (ENSLCRG00005014917)	rab5if (ENSLCRG00005014918)	dhx35 (ENSLCRG00005014923)	mafba (ENSLCRG00005015055)	rnf114 (ENSLCRG00005015058)	spata2 (ENSLCRG00005015060)	opn7b (ENSLCRG00005015061)	ENSLCRG00005015062	slc9a8 (ENSLCRG00005015065)	b4galt5 (ENSLCRG00005015311)	EMILIN3 (ENSLCRG00005015483)
Gilthead seabream	MODERN SPECIES	21	ADCY6 (ENSSAUG00010012879)	ENSSAUG00010013686	G6PD (ENSSAUG00010013690)	GPD1 (ENSSAUG00010013694)	asic1a (ENSSAUG00010013700)	spryd4 (ENSSAUG00010013713)	GLS2 (ENSSAUG00010013723)	col2a1a (ENSSAUG00010014288)	aaas (ENSSAUG00010014758)	map3k12 (ENSSAUG00010015130)	pcbp2 (ENSSAUG00010015135)	DLGAP4 (ENSSAUG00010015253)	ENSSAUG00010015256	ENSSAUG00010015258	snai1b (ENSSAUG00010015260)	ENSSAUG00010015264 #22	GGT7 (ENSSAUG00010015267) #24	NCOA6 (ENSSAUG00010015268) #23	TOP1 (ENSSAUG00010015283)	plcg1 (ENSSAUG00010015476)	zhx3b (ENSSAUG00010015841)	rab5if (ENSSAUG00010015844)	dhx35 (ENSSAUG00010015849)	mafba (ENSSAUG00010015884)	rnf114 (ENSSAUG00010015886)	spata2 (ENSSAUG00010015890)	opn7b (ENSSAUG00010015892)	slc9a8 (ENSSAUG00010015903)	b4galt5 (ENSSAUG00010015937)	EMILIN3 (ENSSAUG00010015965)	aar2 (ENSSAUG00010015969)
Ovalentaria	ANCESTRAL SPECIES	6	ENSGT00940000155343.a.a	ENSGT00940000164736	ENSGT00940000158400	ENSGT01100000263502.A.b.a.a	ENSGT00940000156963.a.a	ENSGT00940000177817	ENSGT00940000164203	ENSGT00390000014570.b	ENSGT00940000164714	ENSGT01070000253775.a.d.a.b.b.h.a	ENSGT00940000156836.b	ENSGT00940000160885	ENSGT00940000158422.b	ENSGT00390000013867	ENSGT00940000154681.b.c	ENSGT00530000063829.C #22	ENSGT00940000156917.a #24	ENSGT00730000111114 #23	ENSGT00940000155006.e.b.b	ENSGT00940000158901	ENSGT00950000182893.a.a.b.a	ENSGT00390000004786	ENSGT00940000156142	ENSGT00940000160486.c	ENSGT00950000182909.b.b.a	ENSGT00530000063956.a	ENSGT01100000263524.B.b.a.a	ENSGT00940000157210	ENSGT00940000158138	ENSGT01030000234633.B.b.a	ENSGT00390000007796
Ovalentaria_B	ANCESTRAL SPECIES	2	ENSGT00940000155343.a.a	ENSGT00940000164736	ENSGT00940000158400	ENSGT01100000263502.A.b.a.a	ENSGT00940000156963.a.a	ENSGT00940000177817	ENSGT00940000164203	ENSGT00390000014570.b	ENSGT00940000164714	ENSGT01070000253775.a.d.a.b.b.h.a	ENSGT00940000156836.b	ENSGT00940000160885	ENSGT00940000158422.b	ENSGT00390000013867	ENSGT00940000154681.b.c	ENSGT00530000063829.C #22	ENSGT00940000156917.a #24	ENSGT00730000111114 #23	ENSGT00940000155006.e.b.b	ENSGT00940000158901	ENSGT00950000182893.a.a.b.a	ENSGT00390000004786	ENSGT00940000156142	ENSGT00940000160486.c	ENSGT00950000182909.b.b.a	ENSGT00530000063956.a	ENSGT01100000263524.B.b.a.a	ENSGT00940000157210	ENSGT00940000158138	ENSGT01030000234633.B.b.a	ENSGT00390000007796
Pomacentridae	ANCESTRAL SPECIES	2	ENSGT00950000182852.B.b	ENSGT00950000182958.b.a.a.b	ENSGT00940000155343.a.a	ENSGT00940000158400	ENSGT01100000263502.A.b.a.a	ENSGT00940000156963.a.a	ENSGT00390000014570.b	ENSGT00940000164203	ENSGT00940000164714	ENSGT01070000253775.a.d.a.b.b.h.a	ENSGT00940000156836.b	ENSGT00940000160885	ENSGT00940000158422.b	ENSGT00390000013867	ENSGT00940000154681.b.c	ENSGT00530000063829.C #22	ENSGT00940000156917.a #24	ENSGT00730000111114 #23	ENSGT00940000155006.e.b.b	ENSGT00940000158901	ENSGT00950000182893.a.a.b.a	ENSGT00390000004786	ENSGT00940000156142	ENSGT00940000160486.c	ENSGT00950000182909.b.b.a	ENSGT00530000063956.a	ENSGT01100000263524.B.b.a.a	ENSGT00940000157210	ENSGT00940000158138	ENSGT01030000234633.B.b.a	ENSGT00390000007796
Bicolor damselfish	MODERN SPECIES	1133													ENSSPAG00000001178	samhd1 (ENSSPAG00000001107)	snai1b (ENSSPAG00000001098)	ENSSPAG00000001089 #22	GGT7 (ENSSPAG00000001014) #24	NCOA6 (ENSSPAG00000000969) #23	TOP1 (ENSSPAG00000000920)	plcg1 (ENSSPAG00000000787)	zhx3b (ENSSPAG00000000776)	rab5if (ENSSPAG00000000771)	dhx35 (ENSSPAG00000000687)
Pomacentridae_A	ANCESTRAL SPECIES	12	ENSGT00950000182958.b.a.a.b	ENSGT00940000155343.a.a	ENSGT00940000164736	ENSGT00940000158400	ENSGT01100000263502.A.b.a.a	ENSGT00940000156963.a.a	ENSGT00390000014570.b	ENSGT00940000164203	ENSGT00940000164714	ENSGT01070000253775.a.d.a.b.b.h.a	ENSGT00940000156836.b	ENSGT00940000160885	ENSGT00940000158422.b	ENSGT00390000013867	ENSGT00940000154681.b.c	ENSGT00530000063829.C #22	ENSGT00940000156917.a #24	ENSGT00730000111114 #23	ENSGT00940000155006.e.b.b	ENSGT00940000158901	ENSGT00950000182893.a.a.b.a	ENSGT00390000004786	ENSGT00940000156142	ENSGT00940000160486.c	ENSGT00950000182909.b.b.a	ENSGT00530000063956.a	ENSGT01100000263524.B.b.a.a	ENSGT00940000157210	ENSGT00940000158138	ENSGT01030000234633.B.b.a	ENSGT00390000007796
Spiny chromis	MODERN SPECIES	79													samhd1 (ENSAPOG00000016415)	snai1b (ENSAPOG00000016426)	mibp2 (ENSAPOG00000016437)	ENSAPOG00000016470 #22	GGT7 (ENSAPOG00000016560) #24	ENSAPOG00000016588 #23	TOP1 (ENSAPOG00000016685)	plcg1 (ENSAPOG00000016841)	zhx3b (ENSAPOG00000016859)	rab5if (ENSAPOG00000016892)	dhx35 (ENSAPOG00000016979)	mafba (ENSAPOG00000016988)	rnf114 (ENSAPOG00000016994)	spata2 (ENSAPOG00000016999)	opn7b (ENSAPOG00000017005)	gas1a (ENSAPOG00000017018)	ENSAPOG00000017045	klhl21 (ENSAPOG00000017059)	ENSAPOG00000017084
Amphiprion	ANCESTRAL SPECIES	22	ENSGT00950000182958.b.a.a.b	ENSGT00940000155343.a.a	ENSGT00940000164736	ENSGT00940000158400	ENSGT01100000263502.A.b.a.a	ENSGT00940000156963.a.a	ENSGT00390000014570.b	ENSGT00940000164203	ENSGT00940000164714	ENSGT01070000253775.a.d.a.b.b.h.a	ENSGT00940000156836.b	ENSGT00940000160885	ENSGT00940000158422.b	ENSGT00390000013867	ENSGT00940000154681.b.c	ENSGT00530000063829.C #22	ENSGT00940000156917.a #24	ENSGT00730000111114 #23	ENSGT00940000155006.e.b.b	ENSGT00940000158901	ENSGT00950000182893.a.a.b.a	ENSGT00390000004786	ENSGT00940000156142	ENSGT00940000160486.c	ENSGT00950000182909.b.b.a	ENSGT00530000063956.a	ENSGT01100000263524.B.b.a.a	ENSGT00940000157210	ENSGT00940000158138	ENSGT01030000234633.B.b.a	ENSGT00390000007796
Orange clownfish	MODERN SPECIES	22	kcnd3 (ENSAPEG00000006660)	ENSAPEG00000006679	ddx20 (ENSAPEG00000006690)	parapinopsina (ENSAPEG00000006717)	ENSAPEG00000006825	p4htma (ENSAPEG00000006874)	ENSAPEG00000006882	ENSAPEG00000006913	SLC26A6 (ENSAPEG00000007039)	KBTBD12 (ENSAPEG00000007406)	ENSAPEG00000007492	ENSAPEG00000007536	ENSAPEG00000007552	samhd1 (ENSAPEG00000007627)	snai1b (ENSAPEG00000007647)	ENSAPEG00000007666 #22	GGT7 (ENSAPEG00000007669) #24	NCOA6 (ENSAPEG00000007739) #23	TOP1 (ENSAPEG00000007810)	plcg1 (ENSAPEG00000007844)	zhx3b (ENSAPEG00000007953)	rab5if (ENSAPEG00000007971)	dhx35 (ENSAPEG00000008001)	mafba (ENSAPEG00000008093)	rnf114 (ENSAPEG00000008110)	spata2 (ENSAPEG00000008119)	opn7b (ENSAPEG00000008124)	slc9a8 (ENSAPEG00000008186)	b4galt5 (ENSAPEG00000008234)	EMILIN3 (ENSAPEG00000008268)	aar2 (ENSAPEG00000008277)
Clown anemonefish	MODERN SPECIES	1559							ENSAOCG00000019188	p4htma (ENSAOCG00000019276)	ENSAOCG00000019335	SLC26A6 (ENSAOCG00000019561)	KBTBD12 (ENSAOCG00000019602)	ENSAOCG00000019642	ENSAOCG00000019665	samhd1 (ENSAOCG00000019724)	snai1b (ENSAOCG00000019753)	ENSAOCG00000019764 #22	GGT7 (ENSAOCG00000019819) #24	ENSAOCG00000019846 #23	TOP1 (ENSAOCG00000019964)	plcg1 (ENSAOCG00000020110)	zhx3b (ENSAOCG00000020130)	rab5if (ENSAOCG00000001494)	dhx35 (ENSAOCG00000020254)	mafba (ENSAOCG00000020286)
Cichlidae	ANCESTRAL SPECIES		ENSGT00940000155343.a.a	ENSGT00940000158400	ENSGT01100000263502.A.b.a.a	ENSGT00940000156963.a.a	ENSGT00940000177817	ENSGT00940000164203	ENSGT00390000014570.b	ENSGT00940000164714	ENSGT01070000253775.a.d.a.b.b.h.a	ENSGT00940000156836.b	ENSGT00940000160885	ENSGT00940000158422.b	ENSGT00390000013867.g.b	ENSGT00390000013867.h	ENSGT00940000154681.b.c	ENSGT00530000063829.C #22	ENSGT00940000156917.a #24	ENSGT00730000111114 #23	ENSGT00940000155006.e.b.b	ENSGT00940000158901	ENSGT00950000182893.a.a.b.a	ENSGT00390000004786	ENSGT00940000156142	ENSGT00940000160486.c	ENSGT00950000182909.b.b.a	ENSGT00530000063956.a	ENSGT01100000263524.B.b.a.a	ENSGT00940000157210	ENSGT00940000158138	ENSGT01030000234633.B.b.a	ENSGT00390000007796
Midas cichlid	MODERN SPECIES	112														samhd1 (ENSACIG00000009319)	snai1b (ENSACIG00000009443)	ENSACIG00000009455 #22	GGT7 (ENSACIG00000009464) #24	ENSACIG00000009512 #23	TOP1 (ENSACIG00000009575)	plcg1 (ENSACIG00000009612)	zhx3b (ENSACIG00000009679)	dhx35 (ENSACIG00000009707)	mafba (ENSACIG00000009757)	rnf114 (ENSACIG00000009773)	spata2 (ENSACIG00000009864)	opn7b (ENSACIG00000009892)	slc9a8 (ENSACIG00000009939)	b4galt5 (ENSACIG00000009982)
Pseudocrenilabrinae	ANCESTRAL SPECIES	5	ENSGT00940000158400	ENSGT01100000263502.A.b.a.a	ENSGT00940000156963.a.a	ENSGT00940000177817	ENSGT00940000164203	ENSGT00390000014570.b	ENSGT00940000164714	ENSGT01070000253775.a.d.a.b.b.h.a	ENSGT00940000156836.b	ENSGT00940000160885	ENSGT00940000158422.b	ENSGT00390000013867.g.b.a.a	ENSGT00390000013867.g.b.a.b	ENSGT00390000013867.h	ENSGT00940000154681.b.c	ENSGT00530000063829.C #22	ENSGT00940000156917.a #24	ENSGT00730000111114 #23	ENSGT00940000155006.e.b.b	ENSGT00940000158901	ENSGT00950000182893.a.a.b.a	ENSGT00390000004786	ENSGT00940000156142	ENSGT00940000160486.c	ENSGT00950000182909.b.b.a	ENSGT00530000063956.a	ENSGT01100000263524.B.b.a.a	ENSGT00940000157210	ENSGT00940000158138	ENSGT01030000234633.B.b.a	ENSGT00390000007796
Nile tilapia	MODERN SPECIES	12	ENSONIG00000012464	ENSONIG00000012465	ENSONIG00000012466	ENSONIG00000034749	ENSONIG00000040562	ENSONIG00000030474	ENSONIG00000033268	ENSONIG00000041779	ENSONIG00000027210	ENSONIG00000040188	ENSONIG00000034865	ENSONIG00000038411	ENSONIG00000027562	samhd1 (ENSONIG00000017453)	snai1b (ENSONIG00000017451)	ENSONIG00000017450 #22	GGT7 (ENSONIG00000017447) #24	ENSONIG00000030796 #23	TOP1 (ENSONIG00000017441)	plcg1 (ENSONIG00000017435)	zhx3b (ENSONIG00000041085)	rab5if (ENSONIG00000017429)	dhx35 (ENSONIG00000017426)	mafba (ENSONIG00000021147)	rnf114 (ENSONIG00000017424)	spata2 (ENSONIG00000032167)	opn7b (ENSONIG00000037865)	slc9a8 (ENSONIG00000017417)	EMILIN3 (ENSONIG00000017412)	b4galt5 (ENSONIG00000030311)	aar2 (ENSONIG00000017411)
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	18													ENSGT00390000013867.g.b.a.b	ENSGT00390000013867.h	ENSGT00940000154681.b.c	ENSGT00530000063829.C #22	ENSGT00940000156917.a #24	ENSGT00730000111114 #23	ENSGT00940000155006.e.b.b	ENSGT00940000158901	ENSGT00950000182893.a.a.b.a	ENSGT00390000004786	ENSGT00940000156142	ENSGT00940000160486.c	ENSGT00950000182909.b.b.a	ENSGT00530000063956.a	ENSGT01100000263524.B.b.a.a	ENSGT00940000157210	ENSGT00940000158138	ENSGT01030000234633.B.b.a	ENSGT00390000007796
Lyretail cichlid	MODERN SPECIES	334														samhd1 (ENSNBRG00000014357)	snai1b (ENSNBRG00000014403)	ENSNBRG00000014472 #22	GGT7 (ENSNBRG00000014485) #24	ENSNBRG00000014526 #23	TOP1 (ENSNBRG00000014546)	plcg1 (ENSNBRG00000014590)	zhx3b (ENSNBRG00000014664)	rab5if (ENSNBRG00000014705)	dhx35 (ENSNBRG00000014723)	mafba (ENSNBRG00000014768)	rnf114 (ENSNBRG00000014785)	spata2 (ENSNBRG00000014835)	opn7b (ENSNBRG00000014842)	slc9a8 (ENSNBRG00000014869)	b4galt5 (ENSNBRG00000014964)	EMILIN3 (ENSNBRG00000014988)	aar2 (ENSNBRG00000015002)
Haplochromini	ANCESTRAL SPECIES	20													ENSGT00390000013867.g.b.a.b	ENSGT00390000013867.h	ENSGT00940000154681.b.c	ENSGT00530000063829.C #22	ENSGT00940000156917.a #24	ENSGT00730000111114 #23	ENSGT00940000155006.e.b.b	ENSGT00940000158901	ENSGT00950000182893.a.a.b.a	ENSGT00390000004786	ENSGT00940000156142	ENSGT00940000160486.c	ENSGT00950000182909.b.b.a	ENSGT00530000063956.a	ENSGT01100000263524.B.b.a.a	ENSGT00940000157210	ENSGT00940000158138	ENSGT01030000234633.B.b.a	ENSGT00390000007796
Burton s mouthbrooder	MODERN SPECIES	553													ENSHBUG00000005972	samhd1 (ENSHBUG00000005786)	snai1b (ENSHBUG00000005726)	ENSHBUG00000005717 #22	GGT7 (ENSHBUG00000005694) #24	ENSHBUG00000005636 #23	TOP1 (ENSHBUG00000005619)	plcg1 (ENSHBUG00000005585)	zhx3b (ENSHBUG00000005529)	rab5if (ENSHBUG00000005516)	dhx35 (ENSHBUG00000005482)	mafba (ENSHBUG00000005400)	rnf114 (ENSHBUG00000005378)	spata2 (ENSHBUG00000005371)	opn7b (ENSHBUG00000005359)	ENSHBUG00000005355	slc9a8 (ENSHBUG00000005342)	b4galt5 (ENSHBUG00000005309)	EMILIN3 (ENSHBUG00000005290)
Haplochromini_A	ANCESTRAL SPECIES	17													ENSGT00390000013867.g.b.a.b	ENSGT00390000013867.h	ENSGT00940000154681.b.c	ENSGT00530000063829.C #22	ENSGT00940000156917.a #24	ENSGT00730000111114 #23	ENSGT00940000155006.e.b.b	ENSGT00940000158901	ENSGT00950000182893.a.a.b.a	ENSGT00390000004786	ENSGT00940000156142	ENSGT00940000160486.c	ENSGT00950000182909.b.b.a	ENSGT00530000063956.a	ENSGT01100000263524.B.b.a.a	ENSGT00940000157210	ENSGT00940000158138	ENSGT01030000234633.B.b.a	ENSGT00390000007796
Haplochromini_B	ANCESTRAL SPECIES	14											ENSGT00390000013867.g.a.b.a.b.a	ENSGT00390000013867.g.b.a.a.d.a	ENSGT00390000013867.g.b.a.b	ENSGT00390000013867.h	ENSGT00940000154681.b.c	ENSGT00530000063829.C #22	ENSGT00940000156917.a #24	ENSGT00730000111114 #23	ENSGT00940000155006.e.b.b	ENSGT00940000158901	ENSGT00950000182893.a.a.b.a	ENSGT00390000004786	ENSGT00940000156142	ENSGT00940000160486.c	ENSGT00950000182909.b.b.a	ENSGT00530000063956.a	ENSGT01100000263524.B.b.a.a	ENSGT00940000157210	ENSGT00940000158138	ENSGT01030000234633.B.b.a	ENSGT00390000007796.g
Eastern happy	MODERN SPECIES	12	ENSACLG00000000397	ENSACLG00000000381	ENSACLG00000000371	NINJ1 (ENSACLG00000000345)	ENSACLG00000000326	ENSACLG00000000285	ENSACLG00000000246	ENSACLG00000000230	ENSACLG00000000146	ENSACLG00000000120	ENSACLG00000000055	ENSACLG00000026513	ENSACLG00000026489	samhd1 (ENSACLG00000026464)	snai1b (ENSACLG00000026461)	ENSACLG00000026435 #22	GGT7 (ENSACLG00000026362) #24	ENSACLG00000026310 #23	TOP1 (ENSACLG00000026288)	plcg1 (ENSACLG00000026161)	zhx3b (ENSACLG00000026150)	ENSACLG00000026144	rab5if (ENSACLG00000026138)	dhx35 (ENSACLG00000026087)	mafba (ENSACLG00000026057)	rnf114 (ENSACLG00000026036)	ENSACLG00000026023	opn7b (ENSACLG00000026014)	slc9a8 (ENSACLG00000025959)	b4galt5 (ENSACLG00000025950)	EMILIN3 (ENSACLG00000025948)
Zebra mbuna	MODERN SPECIES	1103	ENSMZEG00005026669	gpr182 (ENSMZEG00005026668)	ZBTB39 (ENSMZEG00005026667)	agap2 (ENSMZEG00005026665)	tspan31 (ENSMZEG00005026663)	MARCHF9 (ENSMZEG00005026662)	SLC11A2 (ENSMZEG00005026660)	ctdsp2 (ENSMZEG00005026657)	TMBIM6 (ENSMZEG00005026655)	ENSMZEG00005026652	ENSMZEG00005026639	ENSMZEG00005026629	ENSMZEG00005026607	samhd1 (ENSMZEG00005026599)	snai1b (ENSMZEG00005026596)	ENSMZEG00005026594 #22	GGT7 (ENSMZEG00005026589) #24	ENSMZEG00005026586 #23	TOP1 (ENSMZEG00005026581)	plcg1 (ENSMZEG00005026576)	zhx3b (ENSMZEG00005026573)	rab5if (ENSMZEG00005026571)	dhx35 (ENSMZEG00005026563)	mafba (ENSMZEG00005026558)	rnf114 (ENSMZEG00005026556)	spata2 (ENSMZEG00005026554)	opn7b (ENSMZEG00005026553)	ENSMZEG00005026552	slc9a8 (ENSMZEG00005026549)	b4galt5 (ENSMZEG00005026546)	EMILIN3 (ENSMZEG00005026544)
P. nyererei	MODERN SPECIES	395												ENSPNYG00000000670	ENSPNYG00000000797	samhd1 (ENSPNYG00000001152)	snai1b (ENSPNYG00000001207)	ENSPNYG00000001255 #22	GGT7 (ENSPNYG00000001266) #24	ENSPNYG00000001332 #23	TOP1 (ENSPNYG00000001351)	plcg1 (ENSPNYG00000001397)	zhx3b (ENSPNYG00000001554)	rab5if (ENSPNYG00000001566)	dhx35 (ENSPNYG00000001597)	mafba (ENSPNYG00000001689)	rnf114 (ENSPNYG00000001705)	spata2 (ENSPNYG00000001715)	opn7b (ENSPNYG00000001723)	slc9a8 (ENSPNYG00000001787)	b4galt5 (ENSPNYG00000001857)	EMILIN3 (ENSPNYG00000001901)	aar2 (ENSPNYG00000001908)
Atherinomorphae	ANCESTRAL SPECIES	3	ENSGT00950000182852.B.b	ENSGT00940000155343.a.a	ENSGT00940000158400	ENSGT01100000263502.A.b.a.a	ENSGT00940000156963.a.a	ENSGT00940000177817	ENSGT00940000164203	ENSGT00390000014570.b	ENSGT00940000164714	ENSGT01070000253775.a.d.a.b.b.h.a	ENSGT00940000156836.b	ENSGT00940000160885	ENSGT00940000158422.b	ENSGT00390000013867	ENSGT00940000154681.b.c	ENSGT00530000063829.C #22	ENSGT00940000156917.a #24	ENSGT00730000111114 #23	ENSGT00940000155006.e.b.b	ENSGT00940000158901	ENSGT00950000182893.a.a.b.a	ENSGT00390000004786	ENSGT00940000156142	ENSGT00940000160486.c	ENSGT00950000182909.b.b.a	ENSGT00530000063956.a	ENSGT01100000263524.B.b.a.a	ENSGT00940000157210	ENSGT00940000158138	ENSGT01030000234633.B.b.a	ENSGT00390000007796
Oryzias	ANCESTRAL SPECIES	4	ENSGT00950000183119.a.b	ENSGT00950000182852.B.b	ENSGT00940000155343.a.a	ENSGT00940000158400	ENSGT00940000156963.a.a	ENSGT00390000014570.b	ENSGT00940000164203	ENSGT00940000164714	ENSGT01070000253775.a.d.a.b.b.h.a	ENSGT00940000156836.b	ENSGT00940000160885	ENSGT00940000158422.b	ENSGT00390000013867.q.a	ENSGT00390000013867.r	ENSGT00940000154681.b.c	ENSGT00530000063829.C #22	ENSGT00940000156917.a #24	ENSGT00730000111114 #23	ENSGT00940000155006.e.b.b	ENSGT00940000158901	ENSGT00950000182893.a.a.b.a	ENSGT00390000004786	ENSGT00940000156142	ENSGT00940000160486.c	ENSGT00950000182909.b.b.a	ENSGT00530000063956.a	ENSGT01100000263524.B.b.a.a	ENSGT00940000157210	ENSGT00940000158138.l	ENSGT01030000234633.B.b.a	ENSGT00390000007796
Oryzias_a	ANCESTRAL SPECIES		ENSGT00950000183119.a.b	ENSGT00950000182852.B.b	ENSGT00940000155343.a.a	ENSGT00940000158400	ENSGT00940000156963.a.a	ENSGT00940000164203	ENSGT00390000014570.b	ENSGT00940000164714	ENSGT01070000253775.a.d.a.b.b.h.a	ENSGT00940000156836.b	ENSGT00940000160885	ENSGT00940000158422.b	ENSGT00390000013867.q.a	ENSGT00390000013867.r	ENSGT00940000154681.b.c	ENSGT00530000063829.C #22	ENSGT00940000156917.a #24	ENSGT00730000111114 #23	ENSGT00940000155006.e.b.b	ENSGT00940000158901	ENSGT00950000182893.a.a.b.a	ENSGT00390000004786	ENSGT00940000156142	ENSGT00940000160486.c	ENSGT00950000182909.b.b.a	ENSGT00530000063956.a	ENSGT01100000263524.B.b.a.a	ENSGT00940000157210	ENSGT00940000158138.l	ENSGT01030000234633.B.b.a	ENSGT00390000007796
Chinese medaka	MODERN SPECIES	499	ENSOSIG00000018249	capza1b (ENSOSIG00000018143)	cttnbp2nlb (ENSOSIG00000018134)	kcnd3 (ENSOSIG00000018133)	ddx20 (ENSOSIG00000017815)	ENSOSIG00000014406	ENSOSIG00000014382	p4htma (ENSOSIG00000014380)	ENSOSIG00000013101	SLC26A6 (ENSOSIG00000010727)	KBTBD12 (ENSOSIG00000010716)	ENSOSIG00000010712	ENSOSIG00000010711	samhd1 (ENSOSIG00000010708)	snai1b (ENSOSIG00000010705)	ENSOSIG00000010704 #22	GGT7 (ENSOSIG00000010693) #24	NCOA6 (ENSOSIG00000010682) #23	TOP1 (ENSOSIG00000009943)	plcg1 (ENSOSIG00000009891)	zhx3b (ENSOSIG00000009880)	rab5if (ENSOSIG00000009877)	dhx35 (ENSOSIG00000009873)	mafba (ENSOSIG00000009870)	rnf114 (ENSOSIG00000009868)	ENSOSIG00000009867	spata2 (ENSOSIG00000009866)	opn7b (ENSOSIG00000009865)	slc9a8 (ENSOSIG00000009678)	ENSOSIG00000009669	b4galt5 (ENSOSIG00000009325)
Japanese Medaka HdrR	MODERN SPECIES	21	ENSORLG00000023674	ddx20 (ENSORLG00000008949)	ENSORLG00000009019	p4htma (ENSORLG00000009038)	ENSORLG00000009063	ENSORLG00000009110	SLC26A6 (ENSORLG00000009169)	ENSORLG00000009182	misrii (ENSORLG00000009191)	ENSORLG00000023101	ENSORLG00000021917	samhd1 (ENSORLG00000009232)	ENSORLG00000024021	ENSORLG00000026257	snai1b (ENSORLG00000009246)	ENSORLG00000024064 #22	ggt7 (ENSORLG00000009271) #24	ENSORLG00000009292 #23	TOP1 (ENSORLG00000009314)	plcg1 (ENSORLG00000009380)	zhx3b (ENSORLG00000009397)	rab5if (ENSORLG00000029729)	dhx35 (ENSORLG00000009467)	mafba (ENSORLG00000025273)	rnf114 (ENSORLG00000009506)	spata2 (ENSORLG00000009514)	ENSORLG00000027085	opn7b (ENSORLG00000009521)	slc9a8 (ENSORLG00000009537)	b4galt5 (ENSORLG00000009547)	ENSORLG00000009555
Oryzias_b	ANCESTRAL SPECIES	2	ENSGT00950000183119.a.b	ENSGT00950000182852.B.b	ENSGT00940000155343.a.a	ENSGT00940000158400	ENSGT00940000156963.a.a	ENSGT00390000014570.b	ENSGT00940000164203	ENSGT00940000164714	ENSGT01070000253775.a.d.a.b.b.h.a	ENSGT00940000156836.b	ENSGT00940000160885	ENSGT00940000158422.b	ENSGT00390000013867.q.a.a.a	ENSGT00390000013867.r	ENSGT00940000154681.b.c	ENSGT00530000063829.C #22	ENSGT00940000156917.a #24	ENSGT00730000111114 #23	ENSGT00940000155006.e.b.b	ENSGT00940000158901	ENSGT00950000182893.a.a.b.a	ENSGT00390000004786	ENSGT00940000156142	ENSGT00940000160486.c	ENSGT00950000182909.b.b.a	ENSGT00530000063956.a	ENSGT01100000263524.B.b.a.a	ENSGT00940000157210	ENSGT00940000158138.l	ENSGT01030000234633.B.b.a	ENSGT00390000007796
Javanese ricefish	MODERN SPECIES	21	cttnbp2nlb (ENSOJAG00000001101)	kcnd3 (ENSOJAG00000001126)	ddx20 (ENSOJAG00000001145)	ENSOJAG00000001207	p4htma (ENSOJAG00000001283)	ENSOJAG00000001290	ENSOJAG00000001304	SLC26A6 (ENSOJAG00000001406)	KBTBD12 (ENSOJAG00000001503)	ENSOJAG00000001525	ENSOJAG00000001540	ENSOJAG00000001547	ENSOJAG00000001603	samhd1 (ENSOJAG00000001716)	snai1b (ENSOJAG00000001867)	ENSOJAG00000001872 #22	GGT7 (ENSOJAG00000001889) #24	NCOA6 (ENSOJAG00000001966) #23	TOP1 (ENSOJAG00000002142)	plcg1 (ENSOJAG00000002657)	zhx3b (ENSOJAG00000003307)	rab5if (ENSOJAG00000003316)	dhx35 (ENSOJAG00000003345)	mafba (ENSOJAG00000003384)	rnf114 (ENSOJAG00000003396)	spata2 (ENSOJAG00000003405)	opn7b (ENSOJAG00000003421)	slc9a8 (ENSOJAG00000003446)	b4galt5 (ENSOJAG00000003488)	ENSOJAG00000003665	aar2 (ENSOJAG00000003698)
Indian medaka	MODERN SPECIES	23	ddx20 (ENSOMEG00000013657)	ENSOMEG00000013575	p4htma (ENSOMEG00000013397)	ENSOMEG00000013379	ENSOMEG00000013360	SLC26A6 (ENSOMEG00000013305)	KBTBD12 (ENSOMEG00000013258)	ENSOMEG00000013232	ENSOMEG00000013190	ENSOMEG00000013161	ENSOMEG00000013127	ENSOMEG00000013085	samhd1 (ENSOMEG00000012990)	ENSOMEG00000012938	snai1b (ENSOMEG00000012928)	ENSOMEG00000012902 #22	GGT7 (ENSOMEG00000012878) #24	ENSOMEG00000012843 #23	TOP1 (ENSOMEG00000012791)	plcg1 (ENSOMEG00000012744)	zhx3b (ENSOMEG00000012602)	rab5if (ENSOMEG00000012576)	dhx35 (ENSOMEG00000012536)	ENSOMEG00000012450	ENSOMEG00000012438	mafba (ENSOMEG00000012408)	rnf114 (ENSOMEG00000012400)	spata2 (ENSOMEG00000012380)	opn7b (ENSOMEG00000012362)	slc9a8 (ENSOMEG00000012313)	b4galt5 (ENSOMEG00000012258)
Cyprinodontiformes	ANCESTRAL SPECIES	4	ENSGT00950000182852.B.b	ENSGT00940000155343.a.a	ENSGT00940000158400	ENSGT01100000263502.A.b.a.a	ENSGT00940000156963.a.a	ENSGT00940000177817	ENSGT00940000164203	ENSGT00390000014570.b	ENSGT00940000164714	ENSGT01070000253775.a.d.a.b.b.h.a	ENSGT00940000156836.b	ENSGT00940000160885	ENSGT00940000158422.b	ENSGT00390000013867	ENSGT00940000154681.b.c	ENSGT00530000063829.C #22	ENSGT00940000156917.a #24	ENSGT00730000111114 #23	ENSGT00940000155006.e.b.b	ENSGT00940000158901	ENSGT00950000182893.a.a.b.a	ENSGT00390000004786	ENSGT00940000156142	ENSGT00940000160486.c	ENSGT00950000182909.b.b.a	ENSGT00530000063956.a	ENSGT01100000263524.B.b.a.a	ENSGT00940000157210	ENSGT00940000158138	ENSGT01030000234633.B.b.a	ENSGT00390000007796
Cyprinodontoidei	ANCESTRAL SPECIES	3	ENSGT00940000155343.a.a	ENSGT00940000158400	ENSGT01100000263502.A.b.a.a	ENSGT00940000156963.a.a	ENSGT00940000177817	ENSGT00940000164203	ENSGT00390000014570.b	ENSGT00940000164714	ENSGT01070000253775.a.d.a.b.b.h.a	ENSGT00940000156836.b	ENSGT00940000160885	ENSGT00940000158422.b	ENSGT00390000013867.p	ENSGT00940000164472.a.a.b.b.a.a.b	ENSGT00940000154681.b.c	ENSGT00530000063829.C #22	ENSGT00940000156917.a #24	ENSGT00730000111114 #23	ENSGT00940000155006.e.b.b	ENSGT00940000158901	ENSGT00950000182893.a.a.b.a	ENSGT00390000004786	ENSGT00940000156142	ENSGT00940000160486.c	ENSGT00950000182909.b.b.a	ENSGT00530000063956.a	ENSGT01100000263524.B.b.a.a	ENSGT00940000157210	ENSGT00940000158138	ENSGT01030000234633.B.b.a	ENSGT00390000007796
Poeciliinae	ANCESTRAL SPECIES	2	ENSGT00940000155343.a.a	ENSGT00940000158400	ENSGT01100000263502.A.b.a.a	ENSGT00940000156963.a.a	ENSGT00940000177817	ENSGT00940000164203	ENSGT00390000014570.b	ENSGT00940000164714	ENSGT01070000253775.a.d.a.b.b.h.a	ENSGT00940000156836.b	ENSGT00940000160885	ENSGT00940000158422.b	ENSGT00390000013867.p	ENSGT00940000164472.a.a.b.b.a.a.b	ENSGT00940000154681.b.c	ENSGT00530000063829.C #22	ENSGT00940000156917.a #24	ENSGT00730000111114 #23	ENSGT00940000155006.e.b.b	ENSGT00940000158901	ENSGT00950000182893.a.a.b.a	ENSGT00390000004786	ENSGT00940000156142	ENSGT00940000160486.c	ENSGT00950000182909.b.b.a	ENSGT00530000063956.a	ENSGT01100000263524.B.b.a.a	ENSGT00940000157210	ENSGT00940000158138	ENSGT01030000234633.B.b.a	ENSGT00390000007796
Poecilia	ANCESTRAL SPECIES	14	ENSGT00940000158400	ENSGT01100000263502.A.b.a.a	ENSGT00940000156963.a.a	ENSGT00940000177817	ENSGT00940000164203	ENSGT00390000014570.b	ENSGT00940000164714	ENSGT01070000253775.a.d.a.b.b.h.a	ENSGT00940000156836.b	ENSGT00940000160885	ENSGT00940000158422.b	ENSGT00390000013867.p	ENSGT00390000013867.o.b	ENSGT00940000164472.a.a.b.b.a.a.b	ENSGT00940000154681.b.c	ENSGT00530000063829.C #22	ENSGT00940000156917.a #24	ENSGT00730000111114 #23	ENSGT00940000155006.e.b.b	ENSGT00940000158901	ENSGT00950000182893.a.a.b.a	ENSGT00390000004786	ENSGT00940000156142	ENSGT00940000160486.c	ENSGT00950000182909.b.b.a	ENSGT00530000063956.a	ENSGT01100000263524.B.b.a.a	ENSGT00940000157210	ENSGT00940000158138	ENSGT01030000234633.B.b.a	ENSGT00390000007796
Guppy	MODERN SPECIES	459	parapinopsina (ENSPREG00000018826)	ENSPREG00000018765	ENSPREG00000018739	p4htma (ENSPREG00000018725)	ENSPREG00000018714	ENSPREG00000018656	SLC26A6 (ENSPREG00000018621)	KBTBD12 (ENSPREG00000018575)	ENSPREG00000018560	ENSPREG00000018548	ENSPREG00000018532	samhd1 (ENSPREG00000018511)	ENSPREG00000018487	ENSPREG00000018478	snai1b (ENSPREG00000018470)	ENSPREG00000018463 #22	GGT7 (ENSPREG00000018438) #24	ENSPREG00000018417 #23	TOP1 (ENSPREG00000018373)	plcg1 (ENSPREG00000018328)	zhx3b (ENSPREG00000018299)	rab5if (ENSPREG00000018269)	dhx35 (ENSPREG00000018197)	rnf114 (ENSPREG00000018135)	spata2 (ENSPREG00000018124)	opn7b (ENSPREG00000018104)	slc9a8 (ENSPREG00000018068)	ENSPREG00000018058	b4galt5 (ENSPREG00000018051)	aar2 (ENSPREG00000018031)	prpf6 (ENSPREG00000017993)
NAME_6	ANCESTRAL SPECIES	105	ENSGT00940000158400	ENSGT01100000263502.A.b.a.a	ENSGT00940000156963.a.a	ENSGT00940000177817	ENSGT00940000164203	ENSGT00390000014570.b	ENSGT00940000164714	ENSGT01070000253775.a.d.a.b.b.h.a	ENSGT00940000156836.b	ENSGT00940000160885	ENSGT00940000158422.b	ENSGT00390000013867.p	ENSGT00390000013867.o.b	ENSGT00940000164472.a.a.b.b.a.a.b	ENSGT00940000154681.b.c	ENSGT00530000063829.C #22	ENSGT00940000156917.a #24	ENSGT00730000111114 #23	ENSGT00940000155006.e.b.b	ENSGT00940000158901	ENSGT00950000182893.a.a.b.a	ENSGT00390000004786	ENSGT00940000156142	ENSGT00940000160486.c	ENSGT00950000182909.b.b.a	ENSGT00530000063956.a	ENSGT01100000263524.B.b.a.a	ENSGT00940000157210	ENSGT00940000158138	ENSGT01030000234633.B.b.a	ENSGT00390000007796
Sailfin molly	MODERN SPECIES	329	ENSPLAG00000010050	ENSPLAG00000010065	ENSPLAG00000010084	p4htma (ENSPLAG00000010090)	ENSPLAG00000010103	SLC26A6 (ENSPLAG00000000229)	KBTBD12 (ENSPLAG00000010178)	ENSPLAG00000010210	ENSPLAG00000010229	samhd1 (ENSPLAG00000010303)	ENSPLAG00000010358	ENSPLAG00000010374	ENSPLAG00000010565	ENSPLAG00000010588	snai1b (ENSPLAG00000010605)	ENSPLAG00000010622 #22	GGT7 (ENSPLAG00000010671) #24	NCOA6 (ENSPLAG00000010686) #23	ENSPLAG00000010762	PLCG1 (ENSPLAG00000010810)
Amazon molly	MODERN SPECIES	341	kcnd3 (ENSPFOG00000010623)	ddx20 (ENSPFOG00000010540)	parapinopsina (ENSPFOG00000010462)	ENSPFOG00000010009	ENSPFOG00000009916	p4htma (ENSPFOG00000024359)	ENSPFOG00000009646	SLC26A6 (ENSPFOG00000009341)	KBTBD12 (ENSPFOG00000009220)	ENSPFOG00000009167	ENSPFOG00000009064	samhd1 (ENSPFOG00000008702)	ENSPFOG00000023332	ENSPFOG00000023291	snai1b (ENSPFOG00000008667)	ENSPFOG00000008642 #22	GGT7 (ENSPFOG00000008502) #24	NCOA6 (ENSPFOG00000008448) #23	TOP1 (ENSPFOG00000008298)	plcg1 (ENSPFOG00000007841)	zhx3b (ENSPFOG00000007793)	rab5if (ENSPFOG00000007791)	dhx35 (ENSPFOG00000007451)	mafba (ENSPFOG00000007436)	rnf114 (ENSPFOG00000007389)	spata2 (ENSPFOG00000007371)	opn7b (ENSPFOG00000007299)	slc9a8 (ENSPFOG00000007020)	b4galt5 (ENSPFOG00000006923)	EMILIN3 (ENSPFOG00000006865)	aar2 (ENSPFOG00000006833)
Platyfish	MODERN SPECIES		ddx20 (ENSXMAG00000007573)	ENSXMAG00000007551	p4htma (ENSXMAG00000007547)	ENSXMAG00000007548	ENSXMAG00000007523	SLC26A6 (ENSXMAG00000007476)	KBTBD12 (ENSXMAG00000007470)	ENSXMAG00000007463	ENSXMAG00000007457	samhd1 (ENSXMAG00000007439)	ENSXMAG00000007436	ENSXMAG00000030002	ENSXMAG00000028156	ENSXMAG00000000269	snai1b (ENSXMAG00000015281)	ENSXMAG00000023061 #22	GGT7 (ENSXMAG00000015291) #24	ENSXMAG00000023426 #23	TOP1 (ENSXMAG00000015345)	plcg1 (ENSXMAG00000015379)	zhx3b (ENSXMAG00000015457)	rab5if (ENSXMAG00000024990)	dhx35 (ENSXMAG00000015468)	mafba (ENSXMAG00000019914)	rnf114 (ENSXMAG00000015512)	spata2 (ENSXMAG00000015528)	opn7b (ENSXMAG00000015533)	slc9a8 (ENSXMAG00000015549)	b4galt5 (ENSXMAG00000015569)	ENSXMAG00000015576	aar2 (ENSXMAG00000015577)
NAME_4	ANCESTRAL SPECIES	87														ENSGT00940000164472.a.a.b.b.a.a.b	ENSGT00940000154681.b.c	ENSGT00530000063829.C #22	ENSGT00940000156917.a #24	ENSGT00730000111114 #23	ENSGT00940000155006.e.b.b	ENSGT00940000158901	ENSGT00950000182893.a.a.b.a	ENSGT00390000004786	ENSGT00940000156142	ENSGT00940000160486.c	ENSGT00950000182909.b.b.a	ENSGT00530000063956.a	ENSGT01100000263524.B.b.a.a	ENSGT00940000157210	ENSGT00940000158138	ENSGT01030000234633.B.b.a	ENSGT00390000007796
Sheepshead minnow	MODERN SPECIES	300													ENSCVAG00000009823	ENSCVAG00000009917	snai1b (ENSCVAG00000009930)	ENSCVAG00000009939 #22	GGT7 (ENSCVAG00000010024) #24	NCOA6 (ENSCVAG00000010054) #23	TOP1 (ENSCVAG00000010094)	plcg1 (ENSCVAG00000010211)	zhx3b (ENSCVAG00000010221)	rab5if (ENSCVAG00000010234)	dhx35 (ENSCVAG00000010301)	mafba (ENSCVAG00000010311)	rnf114 (ENSCVAG00000010329)	spata2 (ENSCVAG00000010335)	opn7b (ENSCVAG00000010367)	ENSCVAG00000000810	slc9a8 (ENSCVAG00000010444)	b4galt5 (ENSCVAG00000010452)	ENSCVAG00000010464
Mummichog	MODERN SPECIES	2194														ENSFHEG00000022083	snai1b (ENSFHEG00000022095)	ENSFHEG00000022101 #22	GGT7 (ENSFHEG00000022174) #24	NCOA6 (ENSFHEG00000022254) #23	TOP1 (ENSFHEG00000022308)	plcg1 (ENSFHEG00000022467)	zhx3b (ENSFHEG00000022479)	rab5if (ENSFHEG00000022494)	dhx35 (ENSFHEG00000022602)	mafba (ENSFHEG00000022608)	rnf114 (ENSFHEG00000022611)	spata2 (ENSFHEG00000022620)	opn7b (ENSFHEG00000022633)	slc9a8 (ENSFHEG00000022766)	b4galt5 (ENSFHEG00000022808)	ENSFHEG00000022820	aar2 (ENSFHEG00000022825)
Aplocheiloidei	ANCESTRAL SPECIES		ENSGT00950000183119.a.b	ENSGT00950000182852.B.b	ENSGT00940000155343.a.a	ENSGT00940000158400	ENSGT00940000156963.a.a	ENSGT00940000164203	ENSGT00390000014570.b	ENSGT00940000164714	ENSGT01070000253775.a.d.a.b.b.h.a	ENSGT00940000156836.b	ENSGT00940000160885	ENSGT00940000158422.b	ENSGT00390000013867	ENSGT01070000253760.b.a.a.b	ENSGT00940000154681.b.c	ENSGT00530000063829.C #22	ENSGT00940000156917.a #24	ENSGT00730000111114 #23	ENSGT00940000155006.e.b.b	ENSGT00940000158901	ENSGT00950000182893.a.a.b.a	ENSGT00390000004786	ENSGT00940000156142	ENSGT00940000160486.c	ENSGT00950000182909.b.b.a	ENSGT00530000063956.a	ENSGT01100000263524.B.b.a.a	ENSGT00940000157210	ENSGT00940000158138	ENSGT01030000234633.B.b.a	ENSGT00390000007796
Turquoise killifish	MODERN SPECIES	1624	EMILIN3 (ENSNFUG00015014905)	B4GALT5 (ENSNFUG00015014653)	SLC9A8 (ENSNFUG00015013254)	ENSNFUG00015013221	ENSNFUG00015013220	CR847526.1 (ENSNFUG00015013214)	SPATA2 (ENSNFUG00015013211)	rnf114 (ENSNFUG00015013208)	MAFBA (ENSNFUG00015013203)	ENSNFUG00015013202	ENSNFUG00015013200	ENSNFUG00015013197	ENSNFUG00015013195	DHX35 (ENSNFUG00015013152)	snai1b (ENSNFUG00015013138)	TP53INP2 (ENSNFUG00015013125) #22	ENSNFUG00015013114	GGT7 (ENSNFUG00015013068) #24	ENSNFUG00015013038 #23	TOP1 (ENSNFUG00015012115)	plcg1 (ENSNFUG00015010750)	ZHX3 (ENSNFUG00015010579)	rab5if (ENSNFUG00015010571)	ENSNFUG00015010563	SAMHD1 (ENSNFUG00015009751)	Nfu_g_1_001420 (ENSNFUG00015009573)	AMHR2 (ENSNFUG00015009537)	ENSNFUG00015009501	SLC26A6 (ENSNFUG00015008147)	SLC6A8 (ENSNFUG00015007763)	ENSNFUG00015007716
Mangrove rivulus	MODERN SPECIES	32	ENSKMAG00000019212	capza1b (ENSKMAG00000019151)	cttnbp2nlb (ENSKMAG00000019105)	kcnd3 (ENSKMAG00000019060)	ddx20 (ENSKMAG00000019022)	ENSKMAG00000018895	ENSKMAG00000018857	p4htma (ENSKMAG00000018843)	ENSKMAG00000018777	SLC26A6 (ENSKMAG00000018718)	KBTBD12 (ENSKMAG00000018672)	ENSKMAG00000018635	ENSKMAG00000018623	samhd1 (ENSKMAG00000018565)	snai1b (ENSKMAG00000018546)	ENSKMAG00000018527 #22	GGT7 (ENSKMAG00000018478) #24	ENSKMAG00000018442 #23	TOP1 (ENSKMAG00000018356)	plcg1 (ENSKMAG00000018222)	zhx3b (ENSKMAG00000018174)	rab5if (ENSKMAG00000018160)	dhx35 (ENSKMAG00000018089)	mafba (ENSKMAG00000018062)	rnf114 (ENSKMAG00000018049)	spata2 (ENSKMAG00000018042)	opn7b (ENSKMAG00000018026)	slc9a8 (ENSKMAG00000017966)	b4galt5 (ENSKMAG00000017920)	EMILIN3 (ENSKMAG00000017898)	aar2 (ENSKMAG00000017869)
Tiger tail seahorse	MODERN SPECIES	148	prpf6 (ENSHCOG00000011513)	aar2 (ENSHCOG00000011524)	EMILIN3 (ENSHCOG00000011540)	b4galt5 (ENSHCOG00000011552)	slc9a8 (ENSHCOG00000011580)	opn7b (ENSHCOG00000011628)	spata2 (ENSHCOG00000011636)	rnf114 (ENSHCOG00000011643)	mafba (ENSHCOG00000011652)	dhx35 (ENSHCOG00000011691)	rab5if (ENSHCOG00000011725)	zhx3b (ENSHCOG00000011729)	plcg1 (ENSHCOG00000011833)	NCOA6 (ENSHCOG00000011854) #23	GGT7 (ENSHCOG00000011895) #24	ENSHCOG00000011907 #22	ENSHCOG00000011915	ENSHCOG00000011932	SYT2 (ENSHCOG00000011953)	ENSHCOG00000011960	guca1b (ENSHCOG00000011987)	oard1 (ENSHCOG00000012007)	ENSHCOG00000012036	eif4e3 (ENSHCOG00000012145)	ENSHCOG00000012215	mitfb (ENSHCOG00000012288)	FRMD4B (ENSHCOG00000012364)	LMOD3 (ENSHCOG00000012433)	arl6ip5b (ENSHCOG00000012448)	UBA3 (ENSHCOG00000012495)	ENSHCOG00000012512
Pinecone sodierfish	MODERN SPECIES	21	p4htma (ENSMMDG00005016593)	ENSMMDG00005016597	ENSMMDG00005016651	SLC26A6 (ENSMMDG00005017930)	KBTBD12 (ENSMMDG00005018196)	ENSMMDG00005018201	samhd1 (ENSMMDG00005018207)	ENSMMDG00005018249	ENSMMDG00005018256	ENSMMDG00005018265	ENSMMDG00005018277	ENSMMDG00005018286	ENSMMDG00005018289	ENSMMDG00005018290	snai1b (ENSMMDG00005018294)	ENSMMDG00005018298 #22	GGT7 (ENSMMDG00005018306) #24	NCOA6 (ENSMMDG00005018312) #23	TOP1 (ENSMMDG00005018372)	plcg1 (ENSMMDG00005019725)	zhx3b (ENSMMDG00005019813)	rab5if (ENSMMDG00005019816)	dhx35 (ENSMMDG00005019821)	mafba (ENSMMDG00005019833)	rnf114 (ENSMMDG00005019836)	spata2 (ENSMMDG00005019840)	opn7b (ENSMMDG00005019844)	slc9a8 (ENSMMDG00005019858)	b4galt5 (ENSMMDG00005019920)	EMILIN3 (ENSMMDG00005019929)	aar2 (ENSMMDG00005019932)
Cod	MODERN SPECIES		ENSGMOG00000003387	kcnd3 (ENSGMOG00000005160)	ddx20 (ENSGMOG00000024195)	ENSGMOG00000005108	ENSGMOG00000004816	ENSGMOG00000017625	p4htma (ENSGMOG00000017546)	ENSGMOG00000033278	ENSGMOG00000017515	ENSGMOG00000017452	ENSGMOG00000002000	ENSGMOG00000033178	ENSGMOG00000013817	ENSGMOG00000015141	snai1b (ENSGMOG00000026974)	ENSGMOG00000007475 #22	ENSGMOG00000007462 #24	TOP1 (ENSGMOG00000007425)	plcg1 (ENSGMOG00000007363)	zhx3b (ENSGMOG00000003089)	rab5if (ENSGMOG00000003079)	dhx35 (ENSGMOG00000003036)	mafba (ENSGMOG00000030953)	rnf114 (ENSGMOG00000031591)	spata2 (ENSGMOG00000018987)	opn7b (ENSGMOG00000019010)	slc9a8 (ENSGMOG00000019067)	b4galt5 (ENSGMOG00000022899)	ENSGMOG00000019200	aar2 (ENSGMOG00000015584)	ENSGMOG00000015593
Otomorpha	DUPLICATION
Otomorpha	ANCESTRAL SPECIES																	ENSGT00530000063829.C.a #22
Otophysi	ANCESTRAL SPECIES																	ENSGT00530000063829.C.a #22
Cyprinoidei	ANCESTRAL SPECIES																	ENSGT00530000063829.C.a #22
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	212									ENSGT00940000164502.a.b.b	ENSGT00940000156477.d.a.k.a.b	ENSGT00950000182872.f.a.a.a.b.g.a	ENSGT00940000160331.l	ENSGT00390000018330.n.b #28	ENSGT00940000160318.c.b	ENSGT00940000154681.b.d.e	ENSGT00530000063829.C.a.a #22	ENSGT00390000018123.b.a	ENSGT00940000155006.e.a.f	ENSGT00950000182893.a.a.b.b.b	ENSGT00940000158405.e	ENSGT00940000161531.b.a	ENSGT00940000164411.b	ENSGT00530000063631.b.n.a.a	ENSGT00940000166313.a.a	ENSGT00940000166196.f	ENSGT00940000164702.b.b	ENSGT01030000234549.a.a.a.a.a.a.a	ENSGT01030000234549.a.a.a.b.gb	ENSGT00940000155877.b	ENSGT00940000157503.i.b.b	ENSGT01060000253577
Goldfish	MODERN SPECIES	142										arhgap46a (ENSCARG00000034008)	ENSCARG00000034061	ndrg3a (ENSCARG00000034089)	trpc4apa (ENSCARG00000034821) #28	myh7ba (ENSCARG00000035006)	snai1a (ENSCARG00000035323)	tp53inp2 (ENSCARG00000035332) #22	ENSCARG00000035337	top1a (ENSCARG00000035362)	ENSCARG00000036550	fam83d (ENSCARG00000036570)	mafbb (ENSCARG00000036595)	adnpa (ENSCARG00000036603)	gata1a (ENSCARG00000036620)	hcfc1a (ENSCARG00000036717)	opn1sw2 (ENSCARG00000037260)	ENSCARG00000037307	tfe3b (ENSCARG00000037442)	cxxc1b (ENSCARG00000040392)	mbd1b (ENSCARG00000040889)	ccdc120b (ENSCARG00000040903)	comtb (ENSCARG00000040935)
Cyprininae_a	ANCESTRAL SPECIES	3	ENSGT00390000016889.m.b	ENSGT00940000157076.j.c.c	ENSGT00390000008224.e	ENSGT00730000111186.a.a	ENSGT00940000159825.a.b.b	ENSGT00390000017780.f.db	ENSGT00940000166926.a	ENSGT00940000164502.a.b.b	ENSGT00940000156477.d.a.k.a.b	ENSGT00940000156477.d.a.l	ENSGT00950000182872.f.a.a.a.b.g.a	ENSGT00940000160331.l	ENSGT00390000018330.n.b #28	ENSGT00940000160318.c.b	ENSGT00940000154681.b.d.e	ENSGT00530000063829.C.a.a #22	ENSGT00390000018123.b.a	ENSGT00940000155006.e.a.f	ENSGT00950000182893.a.a.b.b.b	ENSGT00940000158405.e	ENSGT00940000161531.b.a	ENSGT00940000164411.b	ENSGT00530000063631.b.n.a.a	ENSGT00940000166313.a.a	ENSGT00940000166196.f	ENSGT00940000164702.b.b	ENSGT01030000234549.a.a.a.a.a.a.a	ENSGT01030000234549.a.a.a.b.gb	ENSGT00940000155877.b	ENSGT00940000157503.i.b.b	ENSGT01060000253577
Common carp reference	MODERN SPECIES	42	rnpep (ENSCCRG00000072647)	cyb5r1 (ENSCCRG00000047979)	ENSCCRG00000048238	kdm5ba (ENSCCRG00000048253)	ipo9 (ENSCCRG00000048310)	shisa4 (ENSCCRG00000076617)	ENSCCRG00000059754	timm17a (ENSCCRG00000003079)	sulf2a (ENSCCRG00000041869)	arhgap46a (ENSCCRG00000003147)	ENSCCRG00000039400	ndrg3a (ENSCCRG00000006676)	trpc4apa (ENSCCRG00000017847) #28	myh7ba (ENSCCRG00000017821)	snai1a (ENSCCRG00000057413)	tp53inp2 (ENSCCRG00000043585) #22	ENSCCRG00000063625	ENSCCRG00000043578	top1a (ENSCCRG00000076066)	fam83d (ENSCCRG00000043564)	ENSCCRG00000043364	adnpa (ENSCCRG00000043343)	hcfc1a (ENSCCRG00000058227)	opn1sw2 (ENSCCRG00000034760)	ENSCCRG00000042194	tfe3b (ENSCCRG00000076795)	ENSCCRG00000082624	cxxc1b (ENSCCRG00000041918)	mbd1b (ENSCCRG00000079505)	ccdc120b (ENSCCRG00000040452)	comtb (ENSCCRG00000055844)
Golden-line barbel	MODERN SPECIES	1	rabif (ENSSGRG00000038391)	kdm5ba (ENSSGRG00000037847)	ipo9 (ENSSGRG00000037642)	SHISA4 (ENSSGRG00000037634)	LMOD1 (ENSSGRG00000037633)	timm17a (ENSSGRG00000037628)	sulf2a (ENSSGRG00000037593)	arhgap46a (ENSSGRG00000037581)	ENSSGRG00000037577	ndrg3a (ENSSGRG00000037502)	ENSSGRG00000037500	trpc4apa (ENSSGRG00000037499) #28	trpc4apa (ENSSGRG00000037498) #28	myh7ba (ENSSGRG00000030364)	snai1a (ENSSGRG00000030274)	tp53inp2 (ENSSGRG00000030273) #22	top1a (ENSSGRG00000029390)	fam83d (ENSSGRG00000029370)	mafbb (ENSSGRG00000029369)	ENSSGRG00000029368	ENSSGRG00000029367	si:dkey-13a21.4 (ENSSGRG00000029365)	hcfc1a (ENSSGRG00000028465)	opn1sw2 (ENSSGRG00000028454)	LWS1 (ENSSGRG00000028050)	gnl3l (ENSSGRG00000028038)	tfe3b (ENSSGRG00000028032)	cxxc1b (ENSSGRG00000027621)	mbd1b (ENSSGRG00000027615)	ccdc120b (ENSSGRG00000027614)	comtb (ENSSGRG00000027613)
Cyprininae	ANCESTRAL SPECIES																	ENSGT00530000063829.C.a.b #22
Cyprininae_a	ANCESTRAL SPECIES	9	ENSGT00940000153962.b.k.a	ENSGT00940000154563.ib.b.a	ENSGT00390000016889.m.a	ENSGT00940000157076.j.c.d	ENSGT00390000008224.f	ENSGT00730000111186.a.b	ENSGT00940000159825.a.b.a	ENSGT00390000017780.f.eb	ENSGT00940000166926.b	ENSGT00940000164502.a.b.a	ENSGT00940000156477.d.a.k.a.a	ENSGT00950000182872.f.a.a.a.b.h	ENSGT00390000018330.n.a #28	ENSGT00940000160318.c.a	ENSGT00940000154681.b.d.f	ENSGT00530000063829.C.a.b #22	ENSGT00390000018123.b.b	ENSGT00940000155006.e.a.e	ENSGT00950000182893.a.a.b.b.a	ENSGT00940000158405.f	ENSGT00940000161531.b.b	ENSGT00940000164411.a	ENSGT00530000063631.b.n.a.b	ENSGT00940000166313.a.b	ENSGT00940000166196.e	ENSGT00940000164702.b.a	ENSGT01030000234549.a.a.a.a.a.a.b	ENSGT01030000234549.a.a.a.b.fb	ENSGT00940000155877.a	ENSGT00940000157503.i.b.a	ENSGT00940000166392.b
Golden-line barbel	MODERN SPECIES	2	GPR25 (ENSSGRG00000052282)	rnpep (ENSSGRG00000052290)	adipor1a (ENSSGRG00000052375)	rabif (ENSSGRG00000052388)	kdm5ba (ENSSGRG00000052400)	shisa4 (ENSSGRG00000052610)	LMOD1 (ENSSGRG00000052611)	timm17a (ENSSGRG00000052612)	sulf2a (ENSSGRG00000052620)	arhgap46a (ENSSGRG00000052621)	ENSSGRG00000052625	ndrg3a (ENSSGRG00000052628)	trpc4apa (ENSSGRG00000052675) #28	ENSSGRG00000052699	snai1a (ENSSGRG00000052701)	tp53inp2 (ENSSGRG00000052702) #22	ENSSGRG00000052703	top1a (ENSSGRG00000052705)	ENSSGRG00000052959	fam83d (ENSSGRG00000052960)	ENSSGRG00000052961	adnpa (ENSSGRG00000052962)	gata1a (ENSSGRG00000052963)	si:dkey-13a21.4 (ENSSGRG00000052964)	hcfc1a (ENSSGRG00000052971)	opn1sw2 (ENSSGRG00000053033)	ENSSGRG00000053037	gnl3l (ENSSGRG00000053063)	cxxc1b (ENSSGRG00000053088)	mbd1b (ENSSGRG00000053211)	ccdc120b (ENSSGRG00000053213)
Common carp reference	MODERN SPECIES	13	cyb5r1 (ENSCCRG00000072849)	adipor1a (ENSCCRG00000004002)	rabif (ENSCCRG00000048242)	kdm5ba (ENSCCRG00000049606)	ipo9 (ENSCCRG00000049729)	shisa4 (ENSCCRG00000049278)	ENSCCRG00000055207	timm17a (ENSCCRG00000077656)	sulf2a (ENSCCRG00000003109)	arhgap46a (ENSCCRG00000025393)	ENSCCRG00000003164	ndrg3a (ENSCCRG00000003216)	trpc4apa (ENSCCRG00000080700) #28	ENSCCRG00000055230	snai1a (ENSCCRG00000054727)	tp53inp2 (ENSCCRG00000079619) #22	ENSCCRG00000043281	top1a (ENSCCRG00000043096)	ENSCCRG00000043267	fam83d (ENSCCRG00000043259)	mafbb (ENSCCRG00000071188)	ENSCCRG00000062076	adnpa (ENSCCRG00000067055)	gata1a (ENSCCRG00000005129)	si:dkey-13a21.4 (ENSCCRG00000005132)	hcfc1a (ENSCCRG00000018417)	ENSCCRG00000034762	gnl3l (ENSCCRG00000034764)	tfe3b (ENSCCRG00000042182)	cxxc1b (ENSCCRG00000040395)	mbd1b (ENSCCRG00000040434)
Zebrafish	MODERN SPECIES	2	adipor1a (ENSDARG00000002912)	rabif (ENSDARG00000002690)	kdm5ba (ENSDARG00000057093)	ipo9 (ENSDARG00000016753)	shisa4 (ENSDARG00000006307)	LMOD1 (ENSDARG00000077261)	timm17a (ENSDARG00000029510)	sulf2a (ENSDARG00000018423)	arhgap46a (ENSDARG00000044874)	ENSDARG00000002750	ndrg3a (ENSDARG00000013087)	ENSDARG00000099887	trpc4apa (ENSDARG00000018840) #28	myh7ba (ENSDARG00000076075)	snai1a (ENSDARG00000056995)	tp53inp2 (ENSDARG00000088178) #22	ENSDARG00000089724	top1a (ENSDARG00000070545)	ENSDARG00000087186	fam83d (ENSDARG00000077883)	mafbb (ENSDARG00000070542)	ENSDARG00000070541	adnpa (ENSDARG00000062002)	gata1a (ENSDARG00000013477)	si:dkey-13a21.4 (ENSDARG00000026098)	hcfc1a (ENSDARG00000015990)	opn1sw2 (ENSDARG00000017274)	opn1lw1 (ENSDARG00000044862)	opn1lw2 (ENSDARG00000044861)	gnl3l (ENSDARG00000020595)	tfe3b (ENSDARG00000019457)
Clupeiformes	ANCESTRAL SPECIES																	ENSGT00530000063829.C.a #22
Denticle herring	MODERN SPECIES	1	hmga1a (ENSDCDG00000021021)	ENSDCDG00000021023	ENSDCDG00000021025	nudt3a (ENSDCDG00000021026)	rps10 (ENSDCDG00000021029)	pacsin1a (ENSDCDG00000021035)	SPDEF (ENSDCDG00000021037)	ilrun (ENSDCDG00000021042)	BLTP3A (ENSDCDG00000021051)	taf11 (ENSDCDG00000021062)	ANKS1A (ENSDCDG00000021081)	ENSDCDG00000021351	OSBPL2 (ENSDCDG00000021362)	ENSDCDG00000021436	snai1b (ENSDCDG00000021447)	TP53INP2 (ENSDCDG00000021449) #22	GGT7 (ENSDCDG00000021455) #24	NCOA6 (ENSDCDG00000021501) #23	zgc:114123 (ENSDCDG00000021506)	TOP1 (ENSDCDG00000021537)	plcg1 (ENSDCDG00000022166)	zhx3b (ENSDCDG00000022330)	rab5if (ENSDCDG00000022332)	dhx35 (ENSDCDG00000022342)	rnf114 (ENSDCDG00000022360)	spata2 (ENSDCDG00000022364)	opn7b (ENSDCDG00000022368)	slc9a8 (ENSDCDG00000003133)	b4galt5 (ENSDCDG00000003357)	EMILIN3 (ENSDCDG00000003441)	ENSDCDG00000003471
Otomorpha	ANCESTRAL SPECIES	22												ENSGT00940000163461.b	ENSGT00390000013764 #26	ENSGT00390000013867	ENSGT00940000154681.b.c	ENSGT00530000063829.C.b #22	ENSGT00940000156917.a #24	ENSGT00730000111114 #23	ENSGT00940000155006.e.b.b	ENSGT00940000158901	ENSGT00950000182893.a.a.b.a	ENSGT00390000004786	ENSGT00940000156142	ENSGT00940000160486.c	ENSGT00950000182909.b.b.a	ENSGT00530000063956.a	ENSGT01100000263524.B.b.a.a	ENSGT00940000157210	ENSGT00940000158138	ENSGT01030000234633.B.b.a	ENSGT00390000007796
Otophysi	ANCESTRAL SPECIES	115															ENSGT00940000154681.b.c	ENSGT00530000063829.C.b #22	ENSGT00940000156917.a #24	ENSGT00730000111114 #23	ENSGT00940000155006.e.b.b	ENSGT00940000158901	ENSGT00950000182893.a.a.b.a	ENSGT00390000004786	ENSGT00940000156142	ENSGT00940000160486.c	ENSGT00950000182909.b.b.a	ENSGT00530000063956.a	ENSGT01100000263524.B.b.a.a	ENSGT00940000157210	ENSGT00940000158138	ENSGT01030000234633.B.b.a	ENSGT00390000007796
Characiphysae	ANCESTRAL SPECIES	73	ENSGT00940000159695	ENSGT00940000156010.db	ENSGT00390000011620.a.a.b.f	ENSGT00940000158073.a	ENSGT00940000155141.x	ENSGT00940000160902.c.b	ENSGT00390000018730.A.e	ENSGT00940000161930	ENSGT00390000002821	ENSGT00940000167932.b	ENSGT00410000025882.b	ENSGT00940000157392.p	ENSGT00940000155614.i.a	ENSGT00950000182835.c.c.g.a	ENSGT00940000154681.b.c	ENSGT00530000063829.C.b #22	ENSGT00940000156917.a #24	ENSGT00730000111114 #23	ENSGT00940000155006.e.b.b	ENSGT00940000158901	ENSGT00950000182893.a.a.b.a	ENSGT00390000004786	ENSGT00940000156142	ENSGT00940000160486.d.c	ENSGT00950000182909.b.b.a	ENSGT00530000063956.a	ENSGT01100000263524.B.b.a.a	ENSGT00940000157210	ENSGT00940000158138	ENSGT01030000234633.B.b.a	ENSGT00390000007796
Channel catfish	MODERN SPECIES	6	ENSIPUG00000015484	ENSIPUG00000015489	ENSIPUG00000015499	kcnk15 (ENSIPUG00000015516)	ogfr (ENSIPUG00000015539)	col9a3 (ENSIPUG00000015548)	ENSIPUG00000015603	dido1 (ENSIPUG00000015614)	ENSIPUG00000015631	ENSIPUG00000015643	SMIM29 (ENSIPUG00000015649)	socs2 (ENSIPUG00000015657)	smc1al (ENSIPUG00000015670)	ENSIPUG00000015751	snai1b (ENSIPUG00000015844)	tp53inp2 (ENSIPUG00000015849) #22	ggt7 (ENSIPUG00000015865) #24	NCOA6 (ENSIPUG00000015933) #23	zgc:114123 (ENSIPUG00000015953)	TOP1 (ENSIPUG00000015990)	PLCG1 (ENSIPUG00000016131)	zhx3b (ENSIPUG00000016291)	c15h20orf24 (ENSIPUG00000016326)	dhx35 (ENSIPUG00000016363)	MAFB (ENSIPUG00000016478)	rnf114 (ENSIPUG00000016483)	spata2 (ENSIPUG00000016496)	opn7b (ENSIPUG00000016509)	nup210 (ENSIPUG00000016553)	FBLN2 (ENSIPUG00000016719)	WNT7A (ENSIPUG00000016744)
Characiphysae_b	ANCESTRAL SPECIES	77					ENSGT00940000167904	ENSGT00940000160902.c.b	ENSGT00390000018730.A.e	ENSGT00940000161930	ENSGT00390000002821	ENSGT00940000167932.a.a	ENSGT00410000025882.b	ENSGT00940000157392.p	ENSGT00940000155614.i.a	ENSGT00950000182835.c.c.g.a	ENSGT00940000154681.b.c	ENSGT00530000063829.C.b #22	ENSGT00940000156917.a #24	ENSGT00730000111114 #23	ENSGT00940000155006.e.b.b	ENSGT00940000158901	ENSGT00950000182893.a.a.b.a	ENSGT00390000004786	ENSGT00940000156142	ENSGT00940000160486.d.c	ENSGT00950000182909.b.b.a	ENSGT00530000063956.a	ENSGT01100000263524.B.b.a.a	ENSGT00940000157210	ENSGT00940000158138	ENSGT01030000234633.B.b.a	ENSGT00390000007796
Characoidei	ANCESTRAL SPECIES	38				ENSGT00940000167904	ENSGT00940000160902.c.b	ENSGT00390000018730.A.e	ENSGT00940000161930	ENSGT00390000002821	ENSGT00940000155532	ENSGT00940000167932.a.a	ENSGT00410000025882.b	ENSGT00940000157392.p	ENSGT00940000155614.i.a	ENSGT00950000182835.c.c.g.a	ENSGT00940000154681.b.c	ENSGT00530000063829.C.b #22	ENSGT00940000156917.a #24	ENSGT00730000111114 #23	ENSGT00940000155006.e.b.b	ENSGT00940000158901	ENSGT00950000182893.a.a.b.a	ENSGT00390000004786	ENSGT00940000156142	ENSGT00940000160486.d.c	ENSGT00950000182909.b.b.a	ENSGT00530000063956.a	ENSGT01100000263524.B.b.a.a	ENSGT00940000157210	ENSGT00940000158138	ENSGT01030000234633.B.b.a	ENSGT00390000007796
Mexicana tetra	MODERN SPECIES	64				ENSAMXG00000002462	kcnk15 (ENSAMXG00000043458)	ogfr (ENSAMXG00000002443)	col9a3 (ENSAMXG00000002074)	ENSAMXG00000033631	ENSAMXG00000042302	hmga1a (ENSAMXG00000035516)	SMIM29 (ENSAMXG00000037930)	ENSAMXG00000036383	smc1al (ENSAMXG00000020424)	PFKFB1 (ENSAMXG00000020429)	snai1b (ENSAMXG00000039849)	ENSAMXG00000020437 #22	GGT7 (ENSAMXG00000020442) #24	ENSAMXG00000004196 #23	zgc:114123 (ENSAMXG00000039705)	ENSAMXG00000032479	TOP1 (ENSAMXG00000020451)	plcg1 (ENSAMXG00000020468)	zhx3b (ENSAMXG00000020512)	rab5if (ENSAMXG00000037270)	dhx35 (ENSAMXG00000020520)
Red-bellied piranha	MODERN SPECIES	55			ENSPNAG00000024749	ENSPNAG00000024729	kcnk15 (ENSPNAG00000024679)	ogfr (ENSPNAG00000024662)	col9a3 (ENSPNAG00000006819)	ENSPNAG00000024507	ENSPNAG00000024470	hmga1a (ENSPNAG00000024330)	SMIM29 (ENSPNAG00000003823)	ENSPNAG00000024282	smc1al (ENSPNAG00000024270)	ENSPNAG00000024157	snai1b (ENSPNAG00000024123)	ENSPNAG00000024099 #22	GGT7 (ENSPNAG00000024085) #24	NCOA6 (ENSPNAG00000023989) #23	zgc:114123 (ENSPNAG00000023930)	TOP1 (ENSPNAG00000007064)	plcg1 (ENSPNAG00000023788)	zhx3b (ENSPNAG00000023616)	rab5if (ENSPNAG00000023602)	dhx35 (ENSPNAG00000023549)	ENSPNAG00000023457	MAFB (ENSPNAG00000023436)	rnf114 (ENSPNAG00000023432)	spata2 (ENSPNAG00000023425)	opn7b (ENSPNAG00000023415)	slc9a8 (ENSPNAG00000023387)	b4galt5 (ENSPNAG00000023303)
Electric eel	MODERN SPECIES	531			ENSEEEG00000013612	ENSEEEG00000013611	kcnk15 (ENSEEEG00000013608)	ogfr (ENSEEEG00000013606)	ENSEEEG00000013605	ENSEEEG00000013603	ENSEEEG00000013598	hmga1a (ENSEEEG00000013597)	SMIM29 (ENSEEEG00000013596)	ENSEEEG00000013595	smc1al (ENSEEEG00000013574)	ENSEEEG00000013447	snai1b (ENSEEEG00000013443)	ENSEEEG00000013442 #22	GGT7 (ENSEEEG00000013441) #24	ENSEEEG00000013439
Cyprinoidei	ANCESTRAL SPECIES	83	ENSGT00940000153467.a.a.fc.a	ENSGT00940000162200.a.a	ENSGT00940000167983	ENSGT00950000183177.a.b.a	ENSGT00940000158340	ENSGT00390000007586.a.b	ENSGT00940000160357	ENSGT01100000263547.a.b.b.a.a.a.a.a	ENSGT00940000159588	ENSGT01030000235096	ENSGT00940000155482	ENSGT00940000157723.d	ENSGT00550000074878	ENSGT00390000000155.b.a	ENSGT00940000154681.b.c	ENSGT00530000063829.C.b #22	ENSGT00940000156917.a #24	ENSGT00730000111114 #23	ENSGT00940000155006.e.b.b	ENSGT00940000158901	ENSGT00950000182893.a.a.b.a	ENSGT00390000004786	ENSGT00940000156142	ENSGT00940000160486.c	ENSGT00950000182909.b.b.a	ENSGT00530000063956.a	ENSGT01100000263524.B.b.a.a	ENSGT00940000157210	ENSGT00940000158138	ENSGT01030000234633.B.b.a	ENSGT00390000007796
Cyprininae	DUPLICATION
Cyprininae	DUPLICATION
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES																	ENSGT00530000063829.C.b.a.a.a #22
Goldfish	MODERN SPECIES	57	IQSEC1 (ENSCARG00000022953)	ENSCARG00000023007	ENSCARG00000023008	ENSCARG00000023009	cnbpa (ENSCARG00000023017)	raf1a (ENSCARG00000023115)	syn2a (ENSCARG00000025554)	prdm5 (ENSCARG00000025578)	ndnf (ENSCARG00000025663)	CPEB2 (ENSCARG00000025691)	ENSCARG00000026334	PLEKHG1 (ENSCARG00000026347)	tcp1 (ENSCARG00000026367)	ENSCARG00000026478	snai1b (ENSCARG00000026486)	ENSCARG00000026503 #22	GGT7 (ENSCARG00000026523) #24	NCOA6 (ENSCARG00000026591) #23	ENSCARG00000026627	plcg1 (ENSCARG00000026709)	zhx3b (ENSCARG00000028175)	rab5if (ENSCARG00000028182)	mafba (ENSCARG00000028185)	rnf114 (ENSCARG00000028192)	spata2 (ENSCARG00000028196)	ENSCARG00000028206	pacsin1a (ENSCARG00000028221)	nudt3a (ENSCARG00000028299)	hmga1a (ENSCARG00000028320)	ENSCARG00000028346	slc9a8 (ENSCARG00000028396)
Cyprininae_a	ANCESTRAL SPECIES																	ENSGT00530000063829.C.b.a.a.a #22
Golden-line barbel	MODERN SPECIES	658					prdm5 (ENSSGRG00000023987)	ndnf (ENSSGRG00000023988)	CPEB2 (ENSSGRG00000023999)	ENSSGRG00000024402	ENSSGRG00000024404	PLEKHG1 (ENSSGRG00000024408)	tcp1 (ENSSGRG00000024470)	PRSS35 (ENSSGRG00000024661)	ENSSGRG00000024663	ENSSGRG00000024664	snai1b (ENSSGRG00000024665)	ENSSGRG00000024666 #22	GGT7 (ENSSGRG00000024667) #24
Cyprininae	ANCESTRAL SPECIES																	ENSGT00530000063829.C.b.a.a.b #22
Cyprininae_a	ANCESTRAL SPECIES																	ENSGT00530000063829.C.b.a.a.b #22
Golden-line barbel	MODERN SPECIES	363			UTRN (ENSSGRG00000032806)	psmb11b (ENSSGRG00000033564)	slc34a2b (ENSSGRG00000033567)	prdm5 (ENSSGRG00000033569)	ENSSGRG00000033572	ndnf (ENSSGRG00000033575)	CPEB2 (ENSSGRG00000033580)	C1QTNF7 (ENSSGRG00000033587)	CC2D2A (ENSSGRG00000033591)	PLEKHG1 (ENSSGRG00000033598)	tcp1 (ENSSGRG00000033620)	ENSSGRG00000034393	snai1b (ENSSGRG00000034394)	TP53INP2 (ENSSGRG00000034395) #22
Cyprininae	ANCESTRAL SPECIES	459								ENSGT00940000158340.g	ENSGT00390000007586.a.b.a	ENSGT00940000160357.e.a	ENSGT00940000157723.d.c	ENSGT00550000074878	ENSGT00390000000155.b.a.c	ENSGT01100000263529.a.a.a.a.a.a.a.b.b.b.a.b.b.a.a	ENSGT00940000154681.b.c.a	ENSGT00530000063829.C.b.a.b #22	ENSGT00940000156917.a.b #24	ENSGT00730000111114.c #23	ENSGT00940000158901.e	ENSGT00950000182893.a.a.b.a.a	ENSGT00940000160486.c.c	ENSGT00950000182909.b.b.a.f	ENSGT00530000063956.a	ENSGT00940000164679.eb.d.b.a	ENSGT00940000157210	ENSGT00940000158138.g	ENSGT01030000234633.B.b.a.b	ENSGT00940000158138.h	ENSGT01030000234633.B.b.a.a.a.a	ENSGT00390000007796	ENSGT00510000046470.a.a.b.b
Cyprininae_a	ANCESTRAL SPECIES	367					ENSGT00940000158340.g	ENSGT00390000007586.a.b.a	ENSGT00940000160357.e.a	ENSGT01100000263547.a.b.b.a.a.a.a.a	ENSGT00940000159588.e	ENSGT00940000155482.b	ENSGT00940000157723.d.c	ENSGT00550000074878.ob	ENSGT00390000000155.b.a.c	ENSGT01100000263529.a.a.a.a.a.a.a.b.b.b.a.b.b.a.a	ENSGT00940000154681.b.c.a	ENSGT00530000063829.C.b.a.b #22	ENSGT00940000156917.a.b #24	ENSGT00730000111114.c #23	ENSGT00940000155006.e.b.b	ENSGT00940000158901.e	ENSGT00950000182893.a.a.b.a.a	ENSGT00390000004786.g.b	ENSGT00940000160486.c.c	ENSGT00950000182909.b.b.a.f	ENSGT00530000063956.a	ENSGT00940000164679.eb.d.b.a	ENSGT00940000157210.c	ENSGT00940000158138.h	ENSGT01030000234633.B.b.a.a.a.a	ENSGT00390000007796	ENSGT00510000046470.a.a.b.b
Common carp reference	MODERN SPECIES	11	ENSCCRG00000042344	prdm5 (ENSCCRG00000022853)	ndnf (ENSCCRG00000055993)	CPEB2 (ENSCCRG00000073539)	ENSCCRG00000033104	ENSCCRG00000013509	ENSCCRG00000060531	ENSCCRG00000022612	ENSCCRG00000070429	tcp1 (ENSCCRG00000022560)	ENSCCRG00000076275	ENSCCRG00000059595	ENSCCRG00000074563	ENSCCRG00000039558	snai1b (ENSCCRG00000022786)	ENSCCRG00000075756 #22	ENSCCRG00000071709 #24	ENSCCRG00000082092 #23	TOP1 (ENSCCRG00000032166)	plcg1 (ENSCCRG00000032195)	zhx3b (ENSCCRG00000075543)	ENSCCRG00000065758	ENSCCRG00000074500	ENSCCRG00000070138	ENSCCRG00000075257	mafba (ENSCCRG00000074407)	rnf114 (ENSCCRG00000015736)	spata2 (ENSCCRG00000015742)	ENSCCRG00000048972	pacsin1a (ENSCCRG00000082067)	nudt3a (ENSCCRG00000055456)
Cyprininae	ANCESTRAL SPECIES	168	ENSGT00940000153467.a.a.fc.a	ENSGT00940000162200.a.a	ENSGT00940000167983	ENSGT00950000183177.a.b.a.e	ENSGT00940000158340.h	ENSGT00390000007586.a.b.b	ENSGT00940000160357.e.b	ENSGT00940000159588.f	ENSGT01030000235096	ENSGT01100000263547.a.b.b.a.a.a.a.a	ENSGT00940000159588.e	ENSGT00940000155482	ENSGT00940000157723.d.d	ENSGT00390000000155.b.a.d	ENSGT00940000154681.b.c.b	ENSGT00530000063829.C.b.b #22	ENSGT00940000156917.a.a #24	ENSGT00730000111114.d #23	ENSGT00940000155006.e.b.b	ENSGT00940000158901.f	ENSGT00950000182893.a.a.b.a.b	ENSGT00390000004786	ENSGT00940000156142	ENSGT00940000160486.c.d	ENSGT00950000182909.b.b.a.e
Cyprininae_a	ANCESTRAL SPECIES	79	ENSGT00390000010101	ENSGT00940000153467.a.a.fc.a	ENSGT00940000162200.a.a	ENSGT00940000167983	ENSGT00950000183177.a.b.a.f	ENSGT00950000183177.a.b.a.e	ENSGT00940000158340.h	ENSGT00390000007586.a.b.b	ENSGT00940000160357.e.b	ENSGT00940000159588.f	ENSGT00940000155482.a.a	ENSGT00940000157723.d.d	ENSGT00550000074878.nb	ENSGT00390000000155.b.a.d	ENSGT00940000154681.b.c.b	ENSGT00530000063829.C.b.b #22	ENSGT00940000156917.a.a #24	ENSGT00730000111114.d #23	ENSGT00390000003058.b.a.b.l	ENSGT00940000158901.f	ENSGT00950000182893.a.a.b.a.b	ENSGT00390000004786.g.a	ENSGT00940000156142	ENSGT00940000160486.c.d	ENSGT00950000182909.b.b.a.e
Common carp reference	MODERN SPECIES	49	ENSCCRG00000009434	ENSCCRG00000056131	prdm5 (ENSCCRG00000022838)	ndnf (ENSCCRG00000082518)	ENSCCRG00000068117	CPEB2 (ENSCCRG00000065707)	ENSCCRG00000064419	CC2D2A (ENSCCRG00000030164)	ENSCCRG00000070182	ENSCCRG00000029020	ENSCCRG00000070334	ENSCCRG00000061091	tcp1 (ENSCCRG00000067021)	ENSCCRG00000065015	snai1b (ENSCCRG00000024135)	ENSCCRG00000071710 #22	ENSCCRG00000056902 #24	ENSCCRG00000076996 #23	plcg1 (ENSCCRG00000060325)	zhx3b (ENSCCRG00000057491)	rab5if (ENSCCRG00000038048)	dhx35 (ENSCCRG00000049267)	mafba (ENSCCRG00000063775)	rnf114 (ENSCCRG00000060470)	spata2 (ENSCCRG00000071221)	ENSCCRG00000045681	ENSCCRG00000020987	ENSCCRG00000070147	ENSCCRG00000078144	ENSCCRG00000078263	ENSCCRG00000080474
Goldfish	MODERN SPECIES	15	fbxo30b (ENSCARG00000009881)	EPM2A (ENSCARG00000009885)	psmb11b (ENSCARG00000010046)	ENSCARG00000010060	slc34a2b (ENSCARG00000010136)	prdm5 (ENSCARG00000011170)	ndnf (ENSCARG00000011190)	CPEB2 (ENSCARG00000011220)	C1QTNF7 (ENSCARG00000011637)	ENSCARG00000011642	CC2D2A (ENSCARG00000011654)	PLEKHG1 (ENSCARG00000011944)	tcp1 (ENSCARG00000011994)	PRSS35 (ENSCARG00000012115)	snai1b (ENSCARG00000012120)	TP53INP2 (ENSCARG00000012126) #22	GGT7 (ENSCARG00000012143) #24	ENSCARG00000012843 #23	TOP1 (ENSCARG00000012904)	plcg1 (ENSCARG00000013028)	zhx3b (ENSCARG00000013954)	rab5if (ENSCARG00000013958)	dhx35 (ENSCARG00000013970)	mafba (ENSCARG00000014042)	pacsin1a (ENSCARG00000014066)	ENSCARG00000014154	rnf114 (ENSCARG00000014157)	spata2 (ENSCARG00000014162)	ENSCARG00000014172	ENSCARG00000014181	ENSCARG00000014204
Zebrafish	MODERN SPECIES	15	fbxo30b (ENSDARG00000019311)	ENSDARG00000075676	ENSDARG00000108006	stxbp3 (ENSDARG00000008142)	rabggta (ENSDARG00000061024)	TGM1 (ENSDARG00000017799)	prdm5 (ENSDARG00000006288)	ndnf (ENSDARG00000062936)	CPEB2 (ENSDARG00000052604)	C1QTNF7 (ENSDARG00000074949)	CC2D2A (ENSDARG00000090971)	ENSDARG00000111585	tcp1 (ENSDARG00000017891)	PRSS35 (ENSDARG00000059081)	snai1b (ENSDARG00000046019)	ENSDARG00000109769 #22	GGT7 (ENSDARG00000115805) #24	ENSDARG00000115082	ENSDARG00000071272 #23	zgc:114123 (ENSDARG00000044956)	TOP1 (ENSDARG00000086775)	plcg1 (ENSDARG00000038442)	zhx3b (ENSDARG00000019774)	rab5if (ENSDARG00000074790)	dhx35 (ENSDARG00000063419)	mafba (ENSDARG00000017121)	rnf114 (ENSDARG00000009886)	spata2 (ENSDARG00000063250)	ENSDARG00000105341	pacsin1a (ENSDARG00000032865)	nudt3a (ENSDARG00000016256)
Clupeiformes	ANCESTRAL SPECIES	322														ENSGT00390000013867	ENSGT00940000154681.b.c	ENSGT00530000063829.C.b #22	ENSGT00940000156917.a #24	ENSGT00730000111114 #23	ENSGT00940000155006.e.b.b	ENSGT00940000158901	ENSGT00950000182893.a.a.b.a	ENSGT00390000004786	ENSGT00940000156142	ENSGT00940000160486.c	ENSGT00950000182909.b.b.a	ENSGT00530000063956.a	ENSGT01100000263524.B.b.a.a	ENSGT00940000157210	ENSGT00940000158138.i	ENSGT01030000234633.B.b.a
Atlantic herring	MODERN SPECIES	20	kctd6b (ENSCHAG00000010250)	abhd6b (ENSCHAG00000010230)	slmapb (ENSCHAG00000010184)	atp6ap1lb (ENSCHAG00000010172)	DNAH12 (ENSCHAG00000006637)	ASB14 (ENSCHAG00000006505)	ENSCHAG00000006169	trpc4apb (ENSCHAG00000005024) #28	ENSCHAG00000004820	samhd1 (ENSCHAG00000002379)	samhd1 (ENSCHAG00000002266)	samhd1 (ENSCHAG00000001845)	gss (ENSCHAG00000000400) #26	samhd1 (ENSCHAG00000000210)	snai1b (ENSCHAG00000000196)	ENSCHAG00000000178 #22	GGT7 (ENSCHAG00000023533) #24	ENSCHAG00000023449 #23	zgc:114123 (ENSCHAG00000023430)	TOP1 (ENSCHAG00000023109)	plcg1 (ENSCHAG00000022986)	zhx3b (ENSCHAG00000022957)	rab5if (ENSCHAG00000022947)	dhx35 (ENSCHAG00000022734)	mafba (ENSCHAG00000022719)	rnf114 (ENSCHAG00000022713)	spata2 (ENSCHAG00000022711)	opn7b (ENSCHAG00000022679)	slc9a8 (ENSCHAG00000022479)	b4galt5 (ENSCHAG00000022268)	EMILIN3 (ENSCHAG00000022249)
Osteoglossiformes	ANCESTRAL SPECIES	76	ENSGT00510000046470.a.a.b	ENSGT00950000183021.a.b.f	ENSGT00940000156478.c	ENSGT00390000007823.`b	ENSGT00950000183029.C	ENSGT00940000159151	ENSGT00940000164502.b	ENSGT00940000156477.c	ENSGT00950000182872.f.a.a.a.a	ENSGT00940000160331.a	ENSGT00940000159233 #29	ENSGT00390000018330.d #28	ENSGT00390000013764 #26	ENSGT00390000013867.cc.a	ENSGT00940000154681.b.a	ENSGT00530000063829.C #22	ENSGT00940000156917.a #24	ENSGT00730000111114.h #23	ENSGT00940000155006.e.b.b	ENSGT00940000158901.c	ENSGT00950000182893.a.a.b.b	ENSGT00390000004786.a	ENSGT00940000158405.d	ENSGT00940000156142	ENSGT00940000160486.c	ENSGT00950000182909.b.b.a	ENSGT00530000063956.a.i	ENSGT01100000263524.B.b.a.a	ENSGT00940000157210	ENSGT00940000158138.e	ENSGT01030000234633.B.b
Asian bonytongue	MODERN SPECIES	11	ID1 (ENSSFOG00015021071)	MRGBP (ENSSFOG00015021074)	eef1a2 (ENSSFOG00015021087)	sulf2b (ENSSFOG00015021111)	ENSSFOG00015021186	phf20b (ENSSFOG00015021216)	ndrg3b (ENSSFOG00015021286)	sla2b (ENSSFOG00015021385)	edem2 (ENSSFOG00015021400) #29	TRPC4AP (ENSSFOG00015021419) #28	ENSSFOG00015024359	gss (ENSSFOG00015021468) #26	ENSSFOG00015028099	samhd1 (ENSSFOG00015021505)	ENSSFOG00015021578	TP53INP2 (ENSSFOG00015021584) #22	GGT7 (ENSSFOG00015021596) #24	zgc:114123 (ENSSFOG00015021618)	TOP1 (ENSSFOG00015021646)	plcg1 (ENSSFOG00015021712)	ZHX3 (ENSSFOG00015030198)	ENSSFOG00015021795	fam83d (ENSSFOG00015021806)	dhx35 (ENSSFOG00015021820)	ENSSFOG00015024695	mafba (ENSSFOG00015028448)	rnf114 (ENSSFOG00015031462)	spata2 (ENSSFOG00015032378)	opn7b (ENSSFOG00015021921)	slc9a8 (ENSSFOG00015021941)	b4galt5 (ENSSFOG00015021983)
P. kingsleyae	MODERN SPECIES	59														samhd1 (ENSPKIG00000006484)	ENSPKIG00000006393	TP53INP2 (ENSPKIG00000006378) #22	GGT7 (ENSPKIG00000006322) #24	ENSPKIG00000006227 #23	ENSPKIG00000006184	TOP1 (ENSPKIG00000006127)	plcg1 (ENSPKIG00000005948)	ZHX3 (ENSPKIG00000005847)	fam83d (ENSPKIG00000005834)	dhx35 (ENSPKIG00000005719)	mafba (ENSPKIG00000005667)	rnf114 (ENSPKIG00000005611)	spata2 (ENSPKIG00000005572)	slc9a8 (ENSPKIG00000005514)	b4galt5 (ENSPKIG00000005447)	EMILIN3 (ENSPKIG00000005418)	aar2 (ENSPKIG00000005382)
Spotted gar	MODERN SPECIES	656	mrgbp (ENSLOCG00000004057)	id1 (ENSLOCG00000004086)	hm13 (ENSLOCG00000004095)	arhgap46a (ENSLOCG00000004130)	phf20b (ENSLOCG00000004172)	sla2b (ENSLOCG00000004198)	ndrg3b (ENSLOCG00000004216)	edem2 (ENSLOCG00000004263) #29	trpc4apa (ENSLOCG00000004284) #28	myh7ba (ENSLOCG00000004315)	gss (ENSLOCG00000004359) #26	samhd1 (ENSLOCG00000004382)	ENSLOCG00000004427	snai1b (ENSLOCG00000004443)	ENSLOCG00000018361	tp53inp2 (ENSLOCG00000004455) #22	NCOA6 (ENSLOCG00000004487) #23	GGT7 (ENSLOCG00000004507) #24	ENSLOCG00000004523	zgc:114123 (ENSLOCG00000004528)	top1a (ENSLOCG00000004545)	plcg1 (ENSLOCG00000004569)	zhx3b (ENSLOCG00000004596)	rab5if (ENSLOCG00000004604)	fam83d (ENSLOCG00000004621)	dhx35 (ENSLOCG00000004639)	ENSLOCG00000004661	mafba (ENSLOCG00000004673)	rnf114 (ENSLOCG00000004685)	spata2 (ENSLOCG00000004705)	opn7b (ENSLOCG00000004718)
Reedfish	MODERN SPECIES	1	ENSECRG00000008086	ENSECRG00000008070	ENSECRG00000008052	ENSECRG00000009917	MTG2 (ENSECRG00000009904)	SS18L1 (ENSECRG00000009876)	PSMA7 (ENSECRG00000009862)	lsm14b (ENSECRG00000009847)	TAF4 (ENSECRG00000009735)	adrm1 (ENSECRG00000009663)	osbpl2b (ENSECRG00000009634)	SOGA1 (ENSECRG00000009600)	ENSECRG00000009576	acss2 (ENSECRG00000009543) #25	ENSECRG00000009523	TP53INP2 (ENSECRG00000009510) #22	NCOA6 (ENSECRG00000009492) #23	GGT7 (ENSECRG00000009465) #24	ENSECRG00000009424	zgc:114123 (ENSECRG00000009398)	top1a (ENSECRG00000009339)	plcg1 (ENSECRG00000009177)	zhx3b (ENSECRG00000009119)	ENSECRG00000009111	ENSECRG00000009107	rab5if (ENSECRG00000009100)	fam83d (ENSECRG00000009087)	dhx35 (ENSECRG00000009062)	psma3 (ENSECRG00000009052)	ENSECRG00000009043	mafba (ENSECRG00000009024)