Gnathostomata	ANCESTRAL SPECIES	180								ENSGT00940000155053 #14	ENSGT00940000157137 #16	ENSGT00940000154695 #17	ENSGT00390000005983	ENSGT00940000157192 #18	ENSGT00530000063186.b.b #19	ENSGT01030000234570.d.a #20	ENSGT00940000157652 #21	ENSGT00530000063688.a #22	ENSGT00390000001447 #23	ENSGT00640000091496 #24	ENSGT00940000156597 #26	ENSGT00940000159094 #30	ENSGT00940000156307.b #31	ENSGT00390000012547.b #32
Euteleostomi	ANCESTRAL SPECIES	40	ENSGT00940000161997.a	ENSGT00940000166348	ENSGT00940000155126 #8	ENSGT00940000168433	ENSGT00390000004553 #9	ENSGT00940000157295 #11	ENSGT00940000156532 #12	ENSGT00720000108792.B #13	ENSGT00940000157137 #16	ENSGT00940000154695 #17	ENSGT00390000005983	ENSGT00940000157192 #18	ENSGT00530000063186.b.b #19	ENSGT01030000234570.d.a #20	ENSGT00940000157652 #21	ENSGT00530000063688.a #22	ENSGT00390000001447 #23	ENSGT00640000091496 #24	ENSGT00940000156597.b #26	ENSGT00940000159094 #30	ENSGT00940000156307.b #31	ENSGT00390000012547.b #32	ENSGT00940000159743	ENSGT00940000162639	ENSGT00940000155408	ENSGT00940000155235	ENSGT00940000161191.B	ENSGT00940000154453.a.a	ENSGT00940000157249
Sarcopterygii	ANCESTRAL SPECIES	95	ENSGT00940000161997.a	ENSGT00940000166348	ENSGT00940000155126 #8	ENSGT00940000168433	ENSGT00390000004553 #9	ENSGT00940000157295 #11	ENSGT00940000156532 #12	ENSGT00720000108792.B #13	ENSGT00940000157137 #16	ENSGT00940000154695 #17	ENSGT00390000005983	ENSGT00940000157192 #18	ENSGT00530000063186.b.b #19	ENSGT01030000234570.d.a #20	ENSGT00940000157652 #21	ENSGT00530000063688.a #22	ENSGT00390000001447 #23	ENSGT00640000091496 #24	ENSGT00940000156597.b #26	ENSGT00940000159094 #30	ENSGT00940000156307.b #31	ENSGT00390000012547.b #32	ENSGT00940000159743	ENSGT00940000162639	ENSGT00940000155408	ENSGT00940000155235	ENSGT00940000161191.B	ENSGT00940000154453.b	ENSGT00940000157249
Tetrapoda	ANCESTRAL SPECIES	6	ENSGT00940000163794	ENSGT00940000166348	ENSGT00940000155126 #8	ENSGT00940000168433	ENSGT00390000004553 #9	ENSGT00940000157295 #11	ENSGT00940000156532 #12	ENSGT00720000108792.B #13	ENSGT00940000157137 #16	ENSGT00940000154695 #17	ENSGT00390000005983	ENSGT00940000157192 #18	ENSGT00530000063186.b.b #19	ENSGT01030000234570.d.a #20	ENSGT00940000157652 #21	ENSGT00530000063688.a #22	ENSGT00390000001447 #23	ENSGT00640000091496 #24	ENSGT00940000156597.b #26	ENSGT00940000159094 #30	ENSGT00940000156307.b #31	ENSGT00390000012547.b #32	ENSGT00940000159743	ENSGT00940000162639	ENSGT00940000161191.B	ENSGT00940000154453.b	ENSGT00940000157249	ENSGT00940000155408	ENSGT00940000155235	ENSGT00940000161508	ENSGT01030000234607.A.b
Amniota	ANCESTRAL SPECIES	6	ENSGT00940000163794	ENSGT00390000008926	ENSGT00940000155126 #8	ENSGT00940000168433	ENSGT00390000004553 #9	ENSGT00940000157295 #11	ENSGT00940000156532 #12	ENSGT00720000108792.B #13	ENSGT00940000155053 #14	ENSGT00940000157137 #16	ENSGT00940000154695 #17	ENSGT00940000157192 #18	ENSGT00530000063186.b.b #19	ENSGT01030000234570.d.a #20	ENSGT00940000157652 #21	ENSGT00530000063688.a #22	ENSGT00390000001447 #23	ENSGT01030000235330	ENSGT00640000091496 #24	ENSGT00940000156597.b #26	ENSGT00940000159094 #30	ENSGT00940000156307.b #31	ENSGT00940000177631	ENSGT00390000012547.b #32	ENSGT00960000187202	ENSGT00390000004840 #33	ENSGT00940000156190	ENSGT00940000159232 #35	ENSGT00940000163494.a.b.g.b	ENSGT00940000159743	ENSGT00940000162639
Mammalia	ANCESTRAL SPECIES	6		ENSGT00390000008926	ENSGT00940000155126 #8	ENSGT00940000168433	ENSGT00390000004553 #9	ENSGT00940000157295 #11	ENSGT00940000156532 #12	ENSGT00720000108792.B #13	ENSGT00940000155053 #14	ENSGT00940000157137 #16	ENSGT00940000154695 #17	ENSGT00940000157192 #18	ENSGT00530000063186.b.b #19	ENSGT01030000234570.d.a #20	ENSGT00940000157652 #21	ENSGT00530000063688.a #22	ENSGT00390000001447 #23	ENSGT01030000235330	ENSGT00640000091496 #24	ENSGT00940000156597.b #26	ENSGT00940000159094 #30	ENSGT00940000156307.b #31	ENSGT00940000177631	ENSGT00390000012547.b #32	ENSGT00960000187202	ENSGT00390000004840 #33	ENSGT00940000156190	ENSGT00940000159232 #35	ENSGT00940000159743	ENSGT00940000162639	ENSGT00940000154453.b
Theria	ANCESTRAL SPECIES	5	ENSGT00940000156882	ENSGT00390000008926	ENSGT00940000155126 #8	ENSGT00940000168433	ENSGT00390000004553 #9	ENSGT00940000157295 #11	ENSGT00940000156532 #12	ENSGT00720000108792.B #13	ENSGT00940000155053 #14	ENSGT00940000157137 #16	ENSGT00940000154695 #17	ENSGT00940000157192 #18	ENSGT00530000063186.b.b #19	ENSGT01030000234570.d.a #20	ENSGT00940000157652 #21	ENSGT00530000063688.a #22	ENSGT00390000001447 #23	ENSGT01030000235330	ENSGT00640000091496 #24	ENSGT00940000156597.b #26	ENSGT00940000159094 #30	ENSGT00940000156307.b #31	ENSGT00940000177631	ENSGT00390000012547.b #32	ENSGT00960000187202	ENSGT00390000004840 #33	ENSGT00940000156190	ENSGT00940000159232 #35	ENSGT00940000158720 #34	ENSGT00940000163272 #37	ENSGT00940000159743
Eutheria	ANCESTRAL SPECIES	10	ENSGT00940000156882	ENSGT00390000008926	ENSGT00940000155126 #8	ENSGT00940000168433	ENSGT00390000004553 #9	ENSGT00940000157295 #11	ENSGT00940000156532 #12	ENSGT00720000108792.B #13	ENSGT00940000155053 #14	ENSGT00940000157137 #16	ENSGT00940000154695 #17	ENSGT00940000157192 #18	ENSGT00530000063186.b.b #19	ENSGT01030000234570.d.a #20	ENSGT00940000157652 #21	ENSGT00530000063688.a #22	ENSGT00390000001447 #23	ENSGT01030000235330	ENSGT00640000091496 #24	ENSGT00940000156597.b #26	ENSGT00940000159094 #30	ENSGT00940000156307.b #31	ENSGT00940000177631	ENSGT00390000012547.b #32	ENSGT00390000004840 #33	ENSGT00940000156190.h	ENSGT00940000159232.h.a ##35	ENSGT00940000156190.g	ENSGT00940000159232.h.b #35	ENSGT00940000158720.c.a ##34	ENSGT00940000163272 #37
Boreoeutheria	ANCESTRAL SPECIES	14	ENSGT00390000008926	ENSGT00940000155126 #8	ENSGT00940000168433	ENSGT00390000004553 #9	ENSGT00940000157295 #11	ENSGT00940000156532 #12	ENSGT00720000108792.B #13	ENSGT00940000155053 #14	ENSGT00940000157137 #16	ENSGT00390000002231.d.b	ENSGT00940000154695 #17	ENSGT00940000157192 #18	ENSGT00530000063186.b.b #19	ENSGT01030000234570.d.a #20	ENSGT00940000157652 #21	ENSGT00530000063688.a #22	ENSGT00390000001447 #23	ENSGT01030000235330	ENSGT00640000091496 #24	ENSGT00940000156597.b #26	ENSGT00940000159094 #30	ENSGT00940000156307.b #31	ENSGT00940000177631	ENSGT00390000012547.b #32	ENSGT00390000004840 #33	ENSGT00940000156190.h	ENSGT00940000159232.h.a ##35	ENSGT00940000156190.g	ENSGT00940000159232.h.b #35	ENSGT00940000158720.c.a ##34	ENSGT00940000158720.c.b ##34
Euarchontoglires	ANCESTRAL SPECIES	14	ENSGT00390000008926	ENSGT00940000155126 #8	ENSGT00940000168433	ENSGT00390000004553 #9	ENSGT00940000157295 #11	ENSGT00940000156532 #12	ENSGT00720000108792.B #13	ENSGT00940000155053 #14	ENSGT00940000157137 #16	ENSGT00390000002231.d.b	ENSGT00940000154695 #17	ENSGT00940000157192 #18	ENSGT00530000063186.b.b #19	ENSGT01030000234570.d.a #20	ENSGT00940000157652 #21	ENSGT00530000063688.a #22	ENSGT00390000001447 #23	ENSGT00640000091496 #24	ENSGT00940000156597.b #26	ENSGT00940000159094 #30	ENSGT00940000156307.b #31	ENSGT00390000012547.b #32	ENSGT00390000004840 #33	ENSGT00940000156190.h	ENSGT00940000159232.h.a ##35	ENSGT00940000159232.h.b #35	ENSGT00940000158720.c.a ##34	ENSGT00940000158720.c.b ##34	ENSGT00940000159743	ENSGT00940000162639	ENSGT00940000154453.b.a.b
Euarchontoglires_A	ANCESTRAL SPECIES	13	ENSGT00390000008926	ENSGT00940000155126 #8	ENSGT00940000168433	ENSGT00390000004553 #9	ENSGT00940000157295 #11	ENSGT00940000156532 #12	ENSGT00720000108792.B #13	ENSGT00940000155053 #14	ENSGT00940000157137 #16	ENSGT00390000002231.d.b	ENSGT00940000154695 #17	ENSGT00940000157192 #18	ENSGT00530000063186.b.b #19	ENSGT01030000234570.d.a #20	ENSGT00940000157652 #21	ENSGT00530000063688.a #22	ENSGT00390000001447 #23	ENSGT00640000091496 #24	ENSGT00940000156597.b #26	ENSGT00940000159094 #30	ENSGT00940000156307.b #31	ENSGT00390000012547.b #32	ENSGT00390000004840 #33	ENSGT00940000156190.h	ENSGT00940000159232.h.a ##35	ENSGT00940000156190.g	ENSGT00940000159232.h.b #35	ENSGT00940000158720.c.a ##34	ENSGT00940000163272.a.a #37	ENSGT00940000158720.c.b ##34	ENSGT00940000159743
Glires	ANCESTRAL SPECIES	14	ENSGT00390000008926	ENSGT00940000155126 #8	ENSGT00940000168433	ENSGT00390000004553 #9	ENSGT00940000157295 #11	ENSGT00940000156532 #12	ENSGT00720000108792.B #13	ENSGT00940000155053 #14	ENSGT00940000157137 #16	ENSGT00390000002231.d.b	ENSGT00940000154695 #17	ENSGT00940000157192 #18	ENSGT00530000063186.b.b #19	ENSGT01030000234570.d.a #20	ENSGT00940000157652 #21	ENSGT00530000063688.a #22	ENSGT00390000001447 #23	ENSGT00640000091496 #24	ENSGT00940000156597.b #26	ENSGT00940000159094 #30	ENSGT00940000156307.b #31	ENSGT00390000012547.b #32	ENSGT00390000004840 #33	ENSGT00940000156190.h	ENSGT00940000159232.h.a ##35	ENSGT00940000159232.h.b #35	ENSGT00940000158720.c.a ##34	ENSGT00940000163272.a.a #37	ENSGT00940000158720.c.b ##34	ENSGT00940000159743	ENSGT00940000162639
Rodentia	ANCESTRAL SPECIES	14	ENSGT00390000008926	ENSGT00940000155126 #8	ENSGT00940000168433	ENSGT00390000004553 #9	ENSGT00940000157295 #11	ENSGT00940000156532 #12	ENSGT00720000108792.B #13	ENSGT00940000155053 #14	ENSGT00940000157137 #16	ENSGT00390000002231.d.b	ENSGT00940000154695 #17	ENSGT00940000157192 #18	ENSGT00530000063186.b.b #19	ENSGT01030000234570.d.a #20	ENSGT00940000157652 #21	ENSGT00530000063688.a #22	ENSGT00390000001447 #23	ENSGT00640000091496 #24	ENSGT00940000156597.b #26	ENSGT00940000163272.a.a #37	ENSGT00940000159094 #30	ENSGT00940000156307.b #31	ENSGT00390000012547.b #32	ENSGT00390000004840 #33	ENSGT00940000156190.h	ENSGT00940000159232.h.a ##35	ENSGT00940000159232.h.b #35	ENSGT00940000158720.c.a ##34	ENSGT00940000158720.c.b ##34	ENSGT00940000159743	ENSGT00940000162639
Rodentia_B	ANCESTRAL SPECIES	12	ENSGT00390000008926	ENSGT00940000155126 #8	ENSGT00940000168433	ENSGT00390000004553 #9	ENSGT00940000157295 #11	ENSGT00940000156532 #12	ENSGT00720000108792.B #13	ENSGT00940000155053 #14	ENSGT00940000157137 #16	ENSGT00390000002231.d.b	ENSGT00940000154695 #17	ENSGT00940000157192 #18	ENSGT00530000063186.b.b #19	ENSGT01030000234570.d.a #20	ENSGT00940000157652 #21	ENSGT00530000063688.a #22	ENSGT00390000001447 #23	ENSGT00640000091496 #24	ENSGT00940000156597.b #26	ENSGT00940000159094 #30	ENSGT00940000156307.b #31	ENSGT00390000012547.b #32	ENSGT00390000004840 #33	ENSGT00940000156190.h	ENSGT00940000159232.h.a ##35	ENSGT00940000159232.h.b #35	ENSGT00940000163272.a.b #36	ENSGT00940000163272.a.a #37	ENSGT00940000159743	ENSGT00940000162639	ENSGT00940000154453.b.a.a
Myomorpha	ANCESTRAL SPECIES	10	ENSGT00390000008926	ENSGT00940000155126 #8	ENSGT00940000168433	ENSGT00390000004553 #9	ENSGT00940000157295 #11	ENSGT00940000156532 #12	ENSGT00720000108792.B #13	ENSGT00940000155053 #14	ENSGT00940000157137 #16	ENSGT00390000002231.d.b	ENSGT00940000154695 #17	ENSGT00940000157192 #18	ENSGT00530000063186.b.b #19	ENSGT01030000234570.d.a #20	ENSGT00940000157652 #21	ENSGT00530000063688.a #22	ENSGT00390000001447 #23	ENSGT00640000091496 #24	ENSGT00940000156597.b #26	ENSGT00940000159094 #30	ENSGT00940000156307.b #31	ENSGT00390000012547.b #32	ENSGT00390000004840 #33	ENSGT00940000156190.h	ENSGT00940000159232.h.a ##35	ENSGT00940000159232.h.b #35	ENSGT00940000163272.a.b #36	ENSGT00940000163272.a.a #37	ENSGT00940000159743	ENSGT00940000162639	ENSGT00940000154453.b.a.a
Muroidea	ANCESTRAL SPECIES	20	ENSGT00390000008926	ENSGT00940000155126 #8	ENSGT00940000168433	ENSGT00390000004553 #9	ENSGT00940000157295 #11	ENSGT00940000156532 #12	ENSGT00720000108792.B #13	ENSGT00940000155053 #14	ENSGT00940000157137 #16	ENSGT00390000002231.d.b	ENSGT00940000154695 #17	ENSGT00940000157192 #18	ENSGT00530000063186.b.b #19	ENSGT01030000234570.d.a #20	ENSGT00940000157652 #21	ENSGT00530000063688.a #22	ENSGT00390000001447 #23	ENSGT00640000091496 #24	ENSGT00940000156597.b #26	ENSGT00940000159094 #30	ENSGT00940000156307.b #31	ENSGT00390000012547.b #32	ENSGT00390000004840 #33	ENSGT00940000156190.h	ENSGT00940000159232.h.a ##35	ENSGT00940000159232.h.b #35	ENSGT00940000163272.a.b #36	ENSGT00940000163272.a.a #37	ENSGT00940000159743	ENSGT00940000162639	ENSGT00940000154453.b.a.a
Muroidea_A	ANCESTRAL SPECIES	19	ENSGT00940000156882	ENSGT00390000008926	ENSGT00940000155126 #8	ENSGT00390000004553 #9	ENSGT00940000157295 #11	ENSGT00940000156532 #12	ENSGT00720000108792.B #13	ENSGT00940000155053 #14	ENSGT00940000157137 #16	ENSGT00390000002231.d.b	ENSGT00940000154695 #17	ENSGT00940000157192 #18	ENSGT00530000063186.b.b #19	ENSGT01030000234570.d.a #20	ENSGT00940000157652 #21	ENSGT00530000063688.a #22	ENSGT00390000001447 #23	ENSGT00640000091496 #24	ENSGT00940000156597.b #26	ENSGT00940000159094 #30	ENSGT00940000156307.b #31	ENSGT00390000012547.b #32	ENSGT00390000004840 #33	ENSGT00940000156190.h	ENSGT00940000159232.h.a ##35	ENSGT00940000159232.h.b #35	ENSGT00940000163272.a.b #36	ENSGT00940000163272.a.a #37	ENSGT00940000159743	ENSGT00940000162639	ENSGT00940000154453.b.a.a
Cricetidae	ANCESTRAL SPECIES	19	ENSGT00940000156882	ENSGT00390000008926	ENSGT00940000155126 #8	ENSGT00390000004553 #9	ENSGT00940000157295 #11	ENSGT00940000156532 #12	ENSGT00720000108792.B #13	ENSGT00940000155053 #14	ENSGT00940000157137 #16	ENSGT00390000002231.d.b	ENSGT00940000154695 #17	ENSGT00940000157192 #18	ENSGT00530000063186.b.b #19	ENSGT01030000234570.d.a #20	ENSGT00940000157652 #21	ENSGT00530000063688.a #22	ENSGT00390000001447 #23	ENSGT00640000091496 #24	ENSGT00940000156597.b #26	ENSGT00940000159094 #30	ENSGT00940000156307.b #31	ENSGT00390000012547.b #32	ENSGT00390000004840 #33	ENSGT00940000156190.h	ENSGT00940000159232.h.a ##35	ENSGT00940000159232.h.b #35	ENSGT00940000163272.a.b #36	ENSGT00940000163272.a.a #37	ENSGT00940000159743	ENSGT00940000162639	ENSGT00940000154453.b.a.a
Cricetidae_B	ANCESTRAL SPECIES	20	ENSGT00940000156882	ENSGT00390000008926	ENSGT00940000155126 #8	ENSGT00390000004553 #9	ENSGT00940000157295 #11	ENSGT00940000156532 #12	ENSGT00720000108792.B #13	ENSGT00940000155053 #14	ENSGT00940000157137 #16	ENSGT00390000002231.d.b	ENSGT00940000154695 #17	ENSGT00940000157192 #18	ENSGT00530000063186.b.b #19	ENSGT01030000234570.d.a #20	ENSGT00940000157652 #21	ENSGT00530000063688.a #22	ENSGT00390000001447 #23	ENSGT00640000091496 #24	ENSGT00940000156597.b #26	ENSGT00940000159094 #30	ENSGT00940000156307.b #31	ENSGT00390000012547.b #32	ENSGT00390000004840 #33	ENSGT00940000156190.h	ENSGT00940000159232.h.a ##35	ENSGT00940000159232.h.b #35	ENSGT00940000163272.a.b #36	ENSGT00940000163272.a.a #37	ENSGT00940000159743	ENSGT00940000162639	ENSGT00940000154453.b.a.a
Prairie vole	MODERN SPECIES	354	ENSMOCG00000020221 #7	Fn1 (ENSMOCG00000022262) #8	Atic (ENSMOCG00000015771) #9	ENSMOCG00000003338 #10	Abca12 (ENSMOCG00000014923) #11	Bard1 (ENSMOCG00000017289) #12	Vwc2l (ENSMOCG00000007279) #13	Spag16 (ENSMOCG00000017743) #14	ENSMOCG00000000249 #15	Ikzf2 (ENSMOCG00000011868) #16	Erbb4 (ENSMOCG00000016854) #17	Cps1 (ENSMOCG00000009767) #18	Lancl1 (ENSMOCG00000017471) #19	Myl1 (ENSMOCG00000021319) #20	Acadl (ENSMOCG00000022401) #21	Kansl1l (ENSMOCG00000020578) #22	Rpe (ENSMOCG00000013941) #23	Unc80 (ENSMOCG00000014746) #24	ENSMOCG00000006121 #25	ENSMOCG00000017798 #26	ENSMOCG00000022246 #27	ENSMOCG00000014035 #28	ENSMOCG00000016045 #29	Pth2r (ENSMOCG00000006742) #30	Pikfyve (ENSMOCG00000014597) #31	IDH1 (ENSMOCG00000018153) #32	ENSMOCG00000008599 #33	ENSMOCG00000015565 #34	Crygc (ENSMOCG00000017760) #35	Crygd (ENSMOCG00000018181) #36	ENSMOCG00000018497 #37
Northern American deer mouse	MODERN SPECIES	4	Pecr (ENSPEMG00000007409)	Mreg (ENSPEMG00000007185)	Fn1 (ENSPEMG00000018184) #8	Atic (ENSPEMG00000014807) #9	Abca12 (ENSPEMG00000016577) #11	Bard1 (ENSPEMG00000009105) #12	Vwc2l (ENSPEMG00000018139) #13	ENSPEMG00000018844 #14	Ikzf2 (ENSPEMG00000011886) #16	ENSPEMG00000024657	Erbb4 (ENSPEMG00000017090) #17	Cps1 (ENSPEMG00000010458) #18	Lancl1 (ENSPEMG00000020372) #19	Myl1 (ENSPEMG00000016490) #20	Acadl (ENSPEMG00000012977) #21	Kansl1l (ENSPEMG00000000580) #22	Rpe (ENSPEMG00000021162) #23	Unc80 (ENSPEMG00000020306) #24	Map2 (ENSPEMG00000020588) #26	ENSPEMG00000024512 #37	ENSPEMG00000024519	Pth2r (ENSPEMG00000008254) #30	ENSPEMG00000024955	Pikfyve (ENSPEMG00000021384) #31	Idh1 (ENSPEMG00000016518) #32	ENSPEMG00000001038	D630023F18Rik (ENSPEMG00000012946) #33	Cryga (ENSPEMG00000028371)	Crygb (ENSPEMG00000011613) ##35	Crygc (ENSPEMG00000027882) #35	Crygd (ENSPEMG00000031321) #36
Cricetinae	ANCESTRAL SPECIES	3	ENSGT00390000015276	ENSGT00940000156882	ENSGT00390000008926	ENSGT00940000155126 #8	ENSGT00390000004553 #9	ENSGT00940000157295 #11	ENSGT00940000156532 #12	ENSGT00720000108792.B #13	ENSGT00940000155053 #14	ENSGT00940000157137 #16	ENSGT00940000154695 #17	ENSGT00940000157192 #18	ENSGT00530000063186.b.b #19	ENSGT01030000234570.d.a #20	ENSGT00940000157652 #21	ENSGT00530000063688.a #22	ENSGT00390000001447 #23	ENSGT00640000091496 #24	ENSGT00940000156597.b #26	ENSGT00940000159094 #30	ENSGT00940000156307.b #31	ENSGT00390000012547.b #32	ENSGT00390000004840 #33	ENSGT00940000156190.h	ENSGT00940000156190.g	ENSGT00940000159232.h.b #35	ENSGT00940000163272.a.b #36	ENSGT00940000163272.a.a #37	ENSGT00940000159743	ENSGT00940000162639	ENSGT00940000154453.b.a.a
Chinese hamster chok1gshd	MODERN SPECIES	1	Tmem169 (ENSCGRG00001022364)	Pecr (ENSCGRG00001020645)	Mreg (ENSCGRG00001019227)	Fn1 (ENSCGRG00001023892) #8	Atic (ENSCGRG00001019907) #9	Abca12 (ENSCGRG00001018994) #11	Bard1 (ENSCGRG00001019211) #12	Vwc2l (ENSCGRG00001022705) #13	ENSCGRG00001018870 #14	Ikzf2 (ENSCGRG00001020531) #16	Erbb4 (ENSCGRG00001023006) #17	Cps1 (ENSCGRG00001019583) #18	Lancl1 (ENSCGRG00001018654) #19	Myl1 (ENSCGRG00001018385) #20	Acadl (ENSCGRG00001020753) #21	Kansl1l (ENSCGRG00001021527) #22	Rpe (ENSCGRG00001018221) #23	Unc80 (ENSCGRG00001024763) #24	Map2 (ENSCGRG00001019179) #26	ENSCGRG00001017914 #37	Pth2r (ENSCGRG00001020290) #30	Pikfyve (ENSCGRG00001019851) #31	Idh1 (ENSCGRG00001018765) #32	D630023F18Rik (ENSCGRG00001021567) #33	Cryga (ENSCGRG00001018244)	ENSCGRG00001020560	Crygc (ENSCGRG00001020149) #35	Crygd (ENSCGRG00001020195) #36	ENSCGRG00001020657 #37	Plekhm3 (ENSCGRG00001023068)	Fzd5 (ENSCGRG00001010794)
Golden Hamster	MODERN SPECIES	640	Tmem169 (ENSMAUG00000014332)	Pecr (ENSMAUG00000009535)	Fn1 (ENSMAUG00000001872) #8	Atic (ENSMAUG00000013188) #9	Abca12 (ENSMAUG00000011442) #11	Bard1 (ENSMAUG00000005663) #12	ENSMAUG00000009590	Vwc2l (ENSMAUG00000009036) #13	ENSMAUG00000010536 #14	Ikzf2 (ENSMAUG00000017775) #16	Erbb4 (ENSMAUG00000021336) #17	Cps1 (ENSMAUG00000010923) #18	Lancl1 (ENSMAUG00000013753) #19	Myl1 (ENSMAUG00000018186) #20	Acadl (ENSMAUG00000018703) #21	Kansl1l (ENSMAUG00000013611) #22	Rpe (ENSMAUG00000011547) #23	ENSMAUG00000009679	ENSMAUG00000019100 #24	Map2 (ENSMAUG00000012012) #26	ENSMAUG00000015143 #37	Pth2r (ENSMAUG00000020947) #30	Pikfyve (ENSMAUG00000001410) #31	ENSMAUG00000001360 #32	D630023F18Rik (ENSMAUG00000022108) #33	Cryga (ENSMAUG00000019430)	ENSMAUG00000022086 ##37	Crygc (ENSMAUG00000009964) #35	Crygd (ENSMAUG00000020101) #36	ENSMAUG00000022028 #37	Plekhm3 (ENSMAUG00000021638)
Murinae	ANCESTRAL SPECIES	9	ENSGT00390000008926	ENSGT01050000247708	ENSGT00940000155126 #8	ENSGT00390000004553 #9	ENSGT00940000157295 #11	ENSGT00940000156532 #12	ENSGT00720000108792.B #13	ENSGT00940000155053 #14	ENSGT00940000157137 #16	ENSGT00390000002231.d.b	ENSGT00940000154695 #17	ENSGT00940000157192 #18	ENSGT00530000063186.b.b #19	ENSGT01030000234570.d.a #20	ENSGT00940000157652 #21	ENSGT00530000063688.a #22	ENSGT00390000001447 #23	ENSGT00640000091496 #24	ENSGT00940000156597.b #26	ENSGT00940000163272.a.a #37	ENSGT00940000159094 #30	ENSGT00940000156307.b #31	ENSGT00390000012547.b #32	ENSGT00390000004840 #33	ENSGT00940000156190.h	ENSGT00940000159232.h.a ##35	ENSGT00940000159232.h.b #35	ENSGT00940000163272.a.b #36	ENSGT00940000159743	ENSGT00940000162639	ENSGT00940000154453.b.a.a
Mus	ANCESTRAL SPECIES	5	ENSGT00390000008926	ENSGT01050000247708	ENSGT00940000155126 #8	ENSGT00390000004553 #9	ENSGT00940000157295 #11	ENSGT00940000156532 #12	ENSGT00720000108792.B #13	ENSGT00940000155053 #14	ENSGT00940000157137 #16	ENSGT00390000002231.d.b	ENSGT00940000154695 #17	ENSGT00940000157192 #18	ENSGT00530000063186.b.b #19	ENSGT01030000234570.d.a #20	ENSGT00940000157652 #21	ENSGT00530000063688.a #22	ENSGT00390000001447 #23	ENSGT00640000091496 #24	ENSGT00940000156597.b #26	ENSGT00940000163272.a.a.i #37	ENSGT00940000159094 #30	ENSGT00940000156307.b #31	ENSGT00390000012547.b #32	ENSGT00390000004840 #33	ENSGT00940000156190.h	ENSGT00940000159232.h.a ##35	ENSGT00940000159232.h.b #35	ENSGT00940000163272.a.b #36	ENSGT00940000163272.a.a.j #37	ENSGT00940000153677.u.b.b.a.a.b	ENSGT00940000159743
Mus_A	ANCESTRAL SPECIES	5	ENSGT00390000008926	ENSGT01050000247708	ENSGT00940000155126 #8	ENSGT00390000004553 #9	ENSGT00940000157295 #11	ENSGT00940000156532 #12	ENSGT00720000108792.B #13	ENSGT00940000155053 #14	ENSGT00940000157137 #16	ENSGT00390000002231.d.b	ENSGT00940000154695 #17	ENSGT00940000157192 #18	ENSGT00530000063186.b.b #19	ENSGT01030000234570.d.a #20	ENSGT00940000157652 #21	ENSGT00530000063688.a #22	ENSGT00390000001447 #23	ENSGT00640000091496 #24	ENSGT00940000156597.b #26	ENSGT00940000163272.a.a.i #37	ENSGT00940000159094 #30	ENSGT00940000156307.b #31	ENSGT00390000012547.b #32	ENSGT00390000004840 #33	ENSGT00940000156190.h	ENSGT00940000159232.h.a ##35	ENSGT00940000159232.h.b #35	ENSGT00940000163272.a.b #36	ENSGT00940000163272.a.a.j #37	ENSGT00940000153677.u.b.b.a.a.b	ENSGT00940000159743
Mus_B	ANCESTRAL SPECIES	7	ENSGT00390000008926	ENSGT01050000247708	ENSGT00940000155126 #8	ENSGT00390000004553 #9	ENSGT00940000157295 #11	ENSGT00940000156532 #12	ENSGT00720000108792.B #13	ENSGT00940000155053 #14	ENSGT00940000157137 #16	ENSGT00390000002231.d.b	ENSGT00940000154695 #17	ENSGT00940000157192 #18	ENSGT00530000063186.b.b #19	ENSGT01030000234570.d.a #20	ENSGT00940000157652 #21	ENSGT00530000063688.a #22	ENSGT00390000001447 #23	ENSGT00640000091496 #24	ENSGT00940000156597.b #26	ENSGT00940000163272.a.a.i #37	ENSGT00940000159094 #30	ENSGT00940000156307.b #31	ENSGT00390000012547.b #32	ENSGT00390000004840 #33	ENSGT00940000156190.h	ENSGT00940000159232.h.a ##35	ENSGT00940000159232.h.b #35	ENSGT00940000163272.a.b #36	ENSGT00940000163272.a.a.j #37	ENSGT00940000153677.u.b.b.a.a.b	ENSGT00940000159743
Mus_C	ANCESTRAL SPECIES	1	ENSGT00390000008926	ENSGT01050000247708	ENSGT00940000155126 #8	ENSGT00390000004553 #9	ENSGT00940000157295 #11	ENSGT00940000156532 #12	ENSGT00720000108792.B #13	ENSGT00940000155053 #14	ENSGT00940000157137 #16	ENSGT00390000002231.d.b	ENSGT00940000154695 #17	ENSGT00940000157192 #18	ENSGT00530000063186.b.b #19	ENSGT01030000234570.d.a #20	ENSGT00940000157652 #21	ENSGT00530000063688.a #22	ENSGT00390000001447 #23	ENSGT00640000091496 #24	ENSGT00940000156597.b #26	ENSGT00940000163272.a.a.i #37	ENSGT00940000159094 #30	ENSGT00940000156307.b #31	ENSGT00390000012547.b #32	ENSGT00390000004840 #33	ENSGT00940000156190.h	ENSGT00940000159232.h.a ##35	ENSGT00940000159232.h.b #35	ENSGT00940000163272.a.b #36	ENSGT00940000163272.a.a.j #37	ENSGT00940000153677.u.b.b.a.a.b	ENSGT00940000159743
Steppe mouse	MODERN SPECIES	3325							ENSMSIG00000002654	ENSMSIG00000002686 #14	Ikzf2 (ENSMSIG00000002778) #16	ENSMSIG00000003111	Erbb4 (ENSMSIG00000003165) #17	Cps1 (ENSMSIG00000003654) #18	Lancl1 (ENSMSIG00000003720) #19	ENSMSIG00000003762 #20	Acadl (ENSMSIG00000003848) #21	Kansl1l (ENSMSIG00000003880) #22	Rpe (ENSMSIG00000003962) #23	Unc80 (ENSMSIG00000004131) #24	Map2 (ENSMSIG00000005432) #26	Crygf (ENSMSIG00000005643) #37
spretus	MODERN SPECIES		Tmem169 (MGP_SPRETEiJ_G0015049)	Pecr (MGP_SPRETEiJ_G0015048)	Mreg (MGP_SPRETEiJ_G0015047)	Fn1 (MGP_SPRETEiJ_G0015046) #8	Atic (MGP_SPRETEiJ_G0015045) #9	Abca12 (MGP_SPRETEiJ_G0015044) #11	Bard1 (MGP_SPRETEiJ_G0015043) #12	Vwc2l (MGP_SPRETEiJ_G0015042) #13	Spag16 (MGP_SPRETEiJ_G0015041) #14	Ikzf2 (MGP_SPRETEiJ_G0015040) #16	Erbb4 (MGP_SPRETEiJ_G0015039) #17	Cps1 (MGP_SPRETEiJ_G0015038) #18	Lancl1 (MGP_SPRETEiJ_G0015037) #19	Myl1 (MGP_SPRETEiJ_G0015036) #20	Acadl (MGP_SPRETEiJ_G0015035) #21	Kansl1l (MGP_SPRETEiJ_G0015034) #22	Rpe (MGP_SPRETEiJ_G0015033) #23	Unc80 (MGP_SPRETEiJ_G0015032) #24	Map2 (MGP_SPRETEiJ_G0015031) #26	Crygf (MGP_SPRETEiJ_G0015030) #37	Pth2r (MGP_SPRETEiJ_G0015029) #30	Pikfyve (MGP_SPRETEiJ_G0015028) #31	Idh1 (MGP_SPRETEiJ_G0015027) #32	MGP_SPRETEiJ_G0015026 #33	MGP_SPRETEiJ_G0015025 #33	Cryga (MGP_SPRETEiJ_G0015024)	Crygb (MGP_SPRETEiJ_G0015023) ##35	Crygc (MGP_SPRETEiJ_G0015022) #35	Crygd (MGP_SPRETEiJ_G0015021) #36	Cryge (MGP_SPRETEiJ_G0015020) #37	Akr1cl (MGP_SPRETEiJ_G0015019)
Mouse	MODERN SPECIES		Tmem169 (ENSMUSG00000026188)	Pecr (ENSMUSG00000026189)	Mreg (ENSMUSG00000039395)	Fn1 (ENSMUSG00000026193) #8	Atic (ENSMUSG00000026192) #9	Abca12 (ENSMUSG00000050296) #11	Bard1 (ENSMUSG00000026196) #12	Vwc2l (ENSMUSG00000045648) #13	Spag16 (ENSMUSG00000053153) #14	Ikzf2 (ENSMUSG00000025997) #16	Erbb4 (ENSMUSG00000062209) #17	Cps1 (ENSMUSG00000025991) #18	Lancl1 (ENSMUSG00000026000) #19	Myl1 (ENSMUSG00000061816) #20	Acadl (ENSMUSG00000026003) #21	Kansl1l (ENSMUSG00000026004) #22	Rpe (ENSMUSG00000026005) #23	Unc80 (ENSMUSG00000055567) #24	Map2 (ENSMUSG00000015222) #26	Crygf (ENSMUSG00000025945) #37	Pth2r (ENSMUSG00000025946) #30	Pikfyve (ENSMUSG00000025949) #31	Idh1 (ENSMUSG00000025950) #32	D630023F18Rik (ENSMUSG00000044816) #33	Gm28845 (ENSMUSG00000100846)	Cryga (ENSMUSG00000044429)	Crygb (ENSMUSG00000073658) ##35	Crygc (ENSMUSG00000025952) #35	Crygd (ENSMUSG00000067299) #36	Cryge (ENSMUSG00000070870) #37	Akr1cl (ENSMUSG00000025955)
Ryukyu mouse	MODERN SPECIES		Tmem169 (MGP_CAROLIEiJ_G0014242)	Pecr (MGP_CAROLIEiJ_G0014241)	Mreg (MGP_CAROLIEiJ_G0014240)	Fn1 (MGP_CAROLIEiJ_G0014239) #8	Atic (MGP_CAROLIEiJ_G0014238) #9	Abca12 (MGP_CAROLIEiJ_G0014237) #11	Bard1 (MGP_CAROLIEiJ_G0014236) #12	Vwc2l (MGP_CAROLIEiJ_G0014235) #13	Spag16 (MGP_CAROLIEiJ_G0014234) #14	Ikzf2 (MGP_CAROLIEiJ_G0014233) #16	Erbb4 (MGP_CAROLIEiJ_G0014232) #17	Cps1 (MGP_CAROLIEiJ_G0014231) #18	Lancl1 (MGP_CAROLIEiJ_G0014230) #19	Myl1 (MGP_CAROLIEiJ_G0014229) #20	Acadl (MGP_CAROLIEiJ_G0014228) #21	Kansl1l (MGP_CAROLIEiJ_G0014227) #22	Rpe (MGP_CAROLIEiJ_G0014226) #23	Unc80 (MGP_CAROLIEiJ_G0014225) #24	Map2 (MGP_CAROLIEiJ_G0014224) #26	Crygf (MGP_CAROLIEiJ_G0014223) #37	Pth2r (MGP_CAROLIEiJ_G0014222) #30	Pikfyve (MGP_CAROLIEiJ_G0014221) #31	Idh1 (MGP_CAROLIEiJ_G0014220) #32	MGP_CAROLIEiJ_G0014219 #33	MGP_CAROLIEiJ_G0014218 #33	Cryga (MGP_CAROLIEiJ_G0014217)	Crygb (MGP_CAROLIEiJ_G0014216) ##35	Crygc (MGP_CAROLIEiJ_G0014215) #35	Crygd (MGP_CAROLIEiJ_G0014214) #36	Cryge (MGP_CAROLIEiJ_G0014213) #37	Akr1cl (MGP_CAROLIEiJ_G0014212)
Shrew mouse	MODERN SPECIES	18	Tmem169 (MGP_PahariEiJ_G0027480)	Pecr (MGP_PahariEiJ_G0027479)	Mreg (MGP_PahariEiJ_G0027478)	Fn1 (MGP_PahariEiJ_G0027477) #8	Atic (MGP_PahariEiJ_G0027476) #9	Abca12 (MGP_PahariEiJ_G0027475) #11	Bard1 (MGP_PahariEiJ_G0027474) #12	Vwc2l (MGP_PahariEiJ_G0027473) #13	Spag16 (MGP_PahariEiJ_G0027472) #14	Ikzf2 (MGP_PahariEiJ_G0027471) #16	Erbb4 (MGP_PahariEiJ_G0027470) #17	Cps1 (MGP_PahariEiJ_G0027469) #18	Lancl1 (MGP_PahariEiJ_G0027468) #19	Myl1 (MGP_PahariEiJ_G0027467) #20	Acadl (MGP_PahariEiJ_G0027466) #21	Kansl1l (MGP_PahariEiJ_G0027465) #22	Rpe (MGP_PahariEiJ_G0027464) #23	Unc80 (MGP_PahariEiJ_G0027463) #24	Map2 (MGP_PahariEiJ_G0027462) #26	MGP_PahariEiJ_G0027461 #37	MGP_PahariEiJ_G0027460 #30	Pikfyve (MGP_PahariEiJ_G0027459) #31	Idh1 (MGP_PahariEiJ_G0027458) #32	MGP_PahariEiJ_G0027457 #33	MGP_PahariEiJ_G0027456 #33	Cryga (MGP_PahariEiJ_G0027455)	Crygb (MGP_PahariEiJ_G0027454) ##35	Crygc (MGP_PahariEiJ_G0027453) #35	Crygd (MGP_PahariEiJ_G0027452) #36	MGP_PahariEiJ_G0027451 #37	Akr1cl (MGP_PahariEiJ_G0027450)
Rat	MODERN SPECIES	19	AABR07068042.1 (ENSRNOG00000037894)	Fn1 (ENSRNOG00000014288) #8	Atic (ENSRNOG00000015511) #9	Abca12 (ENSRNOG00000015248) #11	Bard1 (ENSRNOG00000014960) #12	Vwc2l (ENSRNOG00000027400) #13	ENSRNOG00000069358	LOC102550841 (ENSRNOG00000054475) #14	Ikzf2 (ENSRNOG00000027430) #16	RGD1562431 (ENSRNOG00000032306)	Erbb4 (ENSRNOG00000014248) #17	Cps1 (ENSRNOG00000013704) #18	Lancl1 (ENSRNOG00000013557) #19	Myl1 (ENSRNOG00000013262) #20	Acadl (ENSRNOG00000012966) #21	Kansl1l (ENSRNOG00000028149) #22	Rpe (ENSRNOG00000038085) #23	Unc80 (ENSRNOG00000028362) #24	Map2 (ENSRNOG00000011841) #26	ENSRNOG00000068845	Crygf (ENSRNOG00000032869) #37	Pth2r (ENSRNOG00000015259) #30	Pikfyve (ENSRNOG00000015158) #31	Idh1 (ENSRNOG00000015020) #32	Cryga (ENSRNOG00000046343)	Crygb (ENSRNOG00000032926)	Crygc (ENSRNOG00000014950) #35	Crygd (ENSRNOG00000032219) #36	Cryga (ENSRNOG00000014790) #37	Plekhm3 (ENSRNOG00000023760)	Fzd5 (ENSRNOG00000014678)
Upper Galilee mountains blind mole rat	MODERN SPECIES	1322									ENSNGAG00000011292 #14	Ikzf2 (ENSNGAG00000016617) #16	Erbb4 (ENSNGAG00000012140) #17	Cps1 (ENSNGAG00000011164) #18	Lancl1 (ENSNGAG00000011473) #19	Myl1 (ENSNGAG00000014879) #20	ENSNGAG00000011216 #21	Kansl1l (ENSNGAG00000015682) #22	Rpe (ENSNGAG00000011728) #23	Unc80 (ENSNGAG00000010725) #24	ENSNGAG00000019112 #26	ENSNGAG00000018453 #37	Pth2r (ENSNGAG00000017148) #30	Pikfyve (ENSNGAG00000013615) #31	Idh1 (ENSNGAG00000006870) #32	D630023F18Rik (ENSNGAG00000013154) #33	Crygc (ENSNGAG00000017419) #35	Plekhm3 (ENSNGAG00000007962)	Fzd5 (ENSNGAG00000014954)	Ccnyl1 (ENSNGAG00000004870)	ENSNGAG00000014167	Mettl21a (ENSNGAG00000013752)	Creb1 (ENSNGAG00000018967)
Lesser Egyptian jerboa	MODERN SPECIES	52	ENSJJAG00000016483	Fn1 (ENSJJAG00000021114) #8	Atic (ENSJJAG00000020485) #9	Abca12 (ENSJJAG00000014262) #11	ENSJJAG00000015311 #12	Vwc2l (ENSJJAG00000020624) #13	Spag16 (ENSJJAG00000000768) #14	Ikzf2 (ENSJJAG00000015254) #16	Erbb4 (ENSJJAG00000021464) #17	ENSJJAG00000013028	ENSJJAG00000008457	Cps1 (ENSJJAG00000023728) #18	Lancl1 (ENSJJAG00000005677) #19	Myl1 (ENSJJAG00000000461) #20	Acadl (ENSJJAG00000021820) #21	Kansl1l (ENSJJAG00000020367) #22	ENSJJAG00000012686 #23	Unc80 (ENSJJAG00000015201) #24	Map2 (ENSJJAG00000014034) #26	Pth2r (ENSJJAG00000009843) #30	Pikfyve (ENSJJAG00000019036) #31	Idh1 (ENSJJAG00000018017) #32	D630023F18Rik (ENSJJAG00000011180) #33	Cryga (ENSJJAG00000018493)	ENSJJAG00000013715	Crygc (ENSJJAG00000023810) #35	Crygd (ENSJJAG00000014362) #36	ENSJJAG00000021625 #37	Plekhm3 (ENSJJAG00000012116)	Fzd5 (ENSJJAG00000004014)	Ccnyl1 (ENSJJAG00000024111)
Kangaroo rat	MODERN SPECIES	320	ENSDORG00000028093	Atic (ENSDORG00000010127) #9	Abca12 (ENSDORG00000005459) #11	ENSDORG00000015439 #12	Vwc2l (ENSDORG00000010438) #13	ENSDORG00000025882 #14	Ikzf2 (ENSDORG00000007539) #16	ENSDORG00000028919	ENSDORG00000023387	Erbb4 (ENSDORG00000013025) #17	Cps1 (ENSDORG00000007835) #18	Lancl1 (ENSDORG00000009233) #19	Myl1 (ENSDORG00000027836) #20	ENSDORG00000024057	Acadl (ENSDORG00000005849) #21	Kansl1l (ENSDORG00000005847) #22	Rpe (ENSDORG00000005846) #23	Unc80 (ENSDORG00000005840) #24	Map2 (ENSDORG00000005837) #26	ENSDORG00000014386	ENSDORG00000029050 #37	ENSDORG00000028731	Pth2r (ENSDORG00000005747) #30	Pikfyve (ENSDORG00000005745) #31	Idh1 (ENSDORG00000005744) #32	ENSDORG00000003879 #33	Cryga (ENSDORG00000028587)	ENSDORG00000023215 #34	Crygc (ENSDORG00000023173) #35	Crygd (ENSDORG00000003876) #36	ENSDORG00000027705 #37
Rodentia_A	ANCESTRAL SPECIES	13	ENSGT00390000015276	ENSGT00940000156882	ENSGT00390000008926	ENSGT00940000155126 #8	ENSGT00390000004553 #9	ENSGT00940000157295 #11	ENSGT00940000156532 #12	ENSGT00720000108792.B #13	ENSGT00940000155053 #14	ENSGT00940000157137 #16	ENSGT00940000154695 #17	ENSGT00940000157192 #18	ENSGT00530000063186.b.b #19	ENSGT01030000234570.d.a #20	ENSGT00940000157652 #21	ENSGT00530000063688.a #22	ENSGT00390000001447 #23	ENSGT00640000091496 #24	ENSGT00940000156597.b #26	ENSGT00940000163272.a.a #37	ENSGT00940000159094 #30	ENSGT00940000156307.b #31	ENSGT00390000012547.b #32	ENSGT00390000004840 #33	ENSGT00940000156190.h	ENSGT00940000156190.g	ENSGT00940000159232.h.b #35	ENSGT00940000163272.a.b #36	ENSGT00940000158720.c.b ##34	ENSGT00940000159743	ENSGT00940000162639
Sciuridae	ANCESTRAL SPECIES	10	ENSGT00390000015276	ENSGT00940000156882	ENSGT00390000008926	ENSGT00940000155126 #8	ENSGT00390000004553 #9	ENSGT00940000157295 #11	ENSGT00940000156532 #12	ENSGT00720000108792.B #13	ENSGT00940000155053 #14	ENSGT00940000157137 #16	ENSGT00940000154695 #17	ENSGT00940000157192 #18	ENSGT00530000063186.b.b #19	ENSGT01030000234570.d.a #20	ENSGT00940000157652 #21	ENSGT00530000063688.a #22	ENSGT00390000001447 #23	ENSGT00640000091496 #24	ENSGT00940000156597.b #26	ENSGT00940000163272.a.a #37	ENSGT00940000159094 #30	ENSGT00940000156307.b #31	ENSGT00390000012547.b #32	ENSGT00390000004840 #33	ENSGT00940000156190.h	ENSGT00940000159232.h.a ##35	ENSGT00940000159232.h.b #35	ENSGT00940000158720.c.a ##34	ENSGT00940000163272.a.b #36	ENSGT00940000159743	ENSGT00940000162639
Marmotini	ANCESTRAL SPECIES	2	ENSGT00390000015276	ENSGT00940000156882	ENSGT00390000008926	ENSGT00940000155126 #8	ENSGT00390000004553 #9	ENSGT00940000157295 #11	ENSGT00940000156532 #12	ENSGT00720000108792.B #13	ENSGT00940000155053 #14	ENSGT00940000157137 #16	ENSGT00940000154695 #17	ENSGT00940000157192 #18	ENSGT00530000063186.b.b #19	ENSGT01030000234570.d.a #20	ENSGT00940000157652 #21	ENSGT00530000063688.a #22	ENSGT00390000001447 #23	ENSGT00640000091496 #24	ENSGT00940000156597.b #26	ENSGT00940000163272.a.a #37	ENSGT00940000159094 #30	ENSGT00940000156307.b #31	ENSGT00390000012547.b #32	ENSGT00390000004840 #33	ENSGT00940000156190.h	ENSGT00940000159232.h.a ##35	ENSGT00940000159232.h.b #35	ENSGT00940000163272.a.b #36	ENSGT00940000159743	ENSGT00940000162639	ENSGT00940000154453.b.a.b
Marmotini_b	ANCESTRAL SPECIES	167	ENSGT00390000015276	ENSGT00940000156882	ENSGT00390000008926	ENSGT00940000155126 #8	ENSGT00390000004553 #9	ENSGT00940000157295 #11	ENSGT00940000156532 #12	ENSGT00720000108792.B #13	ENSGT00940000155053 #14	ENSGT00940000157137 #16	ENSGT00940000154695 #17	ENSGT00940000157192 #18	ENSGT00530000063186.b.b #19	ENSGT01030000234570.d.a #20	ENSGT00940000157652 #21	ENSGT00530000063688.a #22	ENSGT00390000001447 #23	ENSGT00640000091496 #24	ENSGT00940000156597.b #26	ENSGT00940000163272.a.a #37
Squirrel	MODERN SPECIES	445															ACADL (ENSSTOG00000023520) #21	KANSL1L (ENSSTOG00000010328) #22	ENSSTOG00000010322 #23	UNC80 (ENSSTOG00000010288) #24	MAP2 (ENSSTOG00000004521) #26
Arctic ground squirrel	MODERN SPECIES	289											ERBB4 (ENSUPAG00010016635) #17	CPS1 (ENSUPAG00010016539) #18	LANCL1 (ENSUPAG00010016524) #19	MYL1 (ENSUPAG00010016493) #20	ACADL (ENSUPAG00010016459) #21	KANSL1L (ENSUPAG00010016379) #22	ENSUPAG00010016336 #23	UNC80 (ENSUPAG00010016116) #24	MAP2 (ENSUPAG00010015927) #26	ENSUPAG00010015906 #37
Alpin marmot	MODERN SPECIES	8	MREG (ENSMMMG00000017833)	FN1 (ENSMMMG00000016529) #8	ATIC (ENSMMMG00000016514) #9	ABCA12 (ENSMMMG00000016481) #11	BARD1 (ENSMMMG00000016460) #12	VWC2L (ENSMMMG00000016430) #13	ENSMMMG00000016401 #14	IKZF2 (ENSMMMG00000016182) #16	ENSMMMG00000016161	ENSMMMG00000016149	ENSMMMG00000016133 #17	CPS1 (ENSMMMG00000016097) #18	LANCL1 (ENSMMMG00000016069) #19	MYL1 (ENSMMMG00000016062) #20	ACADL (ENSMMMG00000015744) #21	KANSL1L (ENSMMMG00000015671) #22	ENSMMMG00000015656 #23	UNC80 (ENSMMMG00000015490) #24	MAP2 (ENSMMMG00000015268) #26	ENSMMMG00000015249 #37	PTH2R (ENSMMMG00000015216) #30	PIKFYVE (ENSMMMG00000015121) #31	IDH1 (ENSMMMG00000015109) #32	C2orf80 (ENSMMMG00000015100) #33	CRYGB (ENSMMMG00000015095) ##35	CRYGC (ENSMMMG00000015089) #35	ENSMMMG00000015075 #36	PLEKHM3 (ENSMMMG00000015063)	ENSMMMG00000015050	CCNYL1 (ENSMMMG00000015025)	METTL21A (ENSMMMG00000015010)
Eurasian red squirrel	MODERN SPECIES	12	ABCA12 (ENSSVLG00005007547) #11	BARD1 (ENSSVLG00005007225) #12	VWC2L (ENSSVLG00005007108) #13	SPAG16 (ENSSVLG00005007010) #14	ENSSVLG00005006962	IKZF2 (ENSSVLG00005006796) #16	ENSSVLG00005006732	ENSSVLG00005006704	ERBB4 (ENSSVLG00005006250) #17	CPS1 (ENSSVLG00005005630) #18	ENSSVLG00005005520 #19	MYL1 (ENSSVLG00005005436) #20	ENSSVLG00005005403	HNRNPA2B1 (ENSSVLG00005005387)	ACADL (ENSSVLG00005005352) #21	KANSL1L (ENSSVLG00005005286) #22	ENSSVLG00005005150 #23	ENSSVLG00005005077	UNC80 (ENSSVLG00005004348) #24	MAP2 (ENSSVLG00005003888) #26	ENSSVLG00005003797	ENSSVLG00005003780 #37	ENSSVLG00005003758	ENSSVLG00005003733	PTH2R (ENSSVLG00005003700) #30	PIKFYVE (ENSSVLG00005003549) #31	IDH1 (ENSSVLG00005003436) #32	C2orf80 (ENSSVLG00005003394) #33	CRYGA (ENSSVLG00005003355)	CRYGB (ENSSVLG00005003340) ##35	CRYGC (ENSSVLG00005003325) #35
Hystricomorpha	ANCESTRAL SPECIES	28	ENSGT00390000015276	ENSGT00940000156882	ENSGT00390000008926	ENSGT00940000155126 #8	ENSGT00390000004553 #9	ENSGT00940000157295 #11	ENSGT00940000156532 #12	ENSGT00720000108792.B #13	ENSGT00940000155053 #14	ENSGT00940000157137 #16	ENSGT00940000154695 #17	ENSGT00940000157192 #18	ENSGT00530000063186.b.b #19	ENSGT01030000234570.d.a #20	ENSGT00940000157652 #21	ENSGT00530000063688.a #22	ENSGT00390000001447 #23	ENSGT00640000091496 #24	ENSGT00940000156597.b #26	ENSGT00940000159094 #30	ENSGT00940000156307.b #31	ENSGT00390000012547.b.c #32	ENSGT00390000012547.b.d #32	ENSGT00390000004840 #33	ENSGT00940000156190.h	ENSGT00940000156190.g	ENSGT00940000159232.h.b #35	ENSGT00940000158720.c.b ##34	ENSGT00940000159743	ENSGT00940000162639	ENSGT00940000154453.b.b
Naked mole-rat female	MODERN SPECIES	17	BARD1 (ENSHGLG00000048952) #12	VWC2L (ENSHGLG00000006216) #13	ENSHGLG00000045998	ENSHGLG00000007634 #14	ENSHGLG00000032302	IKZF2 (ENSHGLG00000015317) #16	ENSHGLG00000042334	ENSHGLG00000049981	ENSHGLG00000036818	ERBB4 (ENSHGLG00000015379) #17	ENSHGLG00000039921	CPS1 (ENSHGLG00000017911) #18	LANCL1 (ENSHGLG00000036257) #19	MYL1 (ENSHGLG00000048085) #20	ENSHGLG00000004628 #21	KANSL1L (ENSHGLG00000005747) #22	ENSHGLG00000008127 #23	ENSHGLG00000018871 #24	ENSHGLG00000009762 #26	ENSHGLG00000044133	ENSHGLG00000008713	ENSHGLG00000037435 ##34	ENSHGLG00000012419	ENSHGLG00000012576	ENSHGLG00000020810	ENSHGLG00000005131 #30	PIKFYVE (ENSHGLG00000005275) #31	IDH1 (ENSHGLG00000006766) #32	ENSHGLG00000047720	ENSHGLG00000036358	C2orf80 (ENSHGLG00000007437) #33
Hystricomorpha_a	ANCESTRAL SPECIES	67			ENSGT00390000008926	ENSGT00940000155126 #8	ENSGT00390000004553 #9	ENSGT00940000157295 #11	ENSGT00940000156532 #12	ENSGT00720000108792.B #13	ENSGT00940000155053 #14	ENSGT00940000157137 #16	ENSGT00940000154695 #17	ENSGT00940000157192 #18	ENSGT00530000063186.b.b #19	ENSGT01030000234570.d.a #20	ENSGT00940000157652 #21	ENSGT00530000063688.a #22	ENSGT00390000001447 #23	ENSGT00640000091496 #24	ENSGT00940000156597.b #26	ENSGT00940000159094 #30	ENSGT00940000156307.b #31	ENSGT00390000012547.b.d #32	ENSGT00390000004840 #33	ENSGT00940000156190.h	ENSGT00940000156190.g	ENSGT00940000159232.h.b #35	ENSGT00940000159743	ENSGT00940000162639	ENSGT00940000154453.b.b	ENSGT00940000157249	ENSGT00940000155408
Guinea pig	MODERN SPECIES	13			MREG (ENSCPOG00000038481)	FN1 (ENSCPOG00000012808) #8	ATIC (ENSCPOG00000012802) #9	ABCA12 (ENSCPOG00000005978) #11	BARD1 (ENSCPOG00000011499) #12	VWC2L (ENSCPOG00000013515) #13	IKZF2 (ENSCPOG00000013506) #16	ERBB4 (ENSCPOG00000011232) #17	ENSCPOG00000035740	CPS1 (ENSCPOG00000004146) #18	LANCL1 (ENSCPOG00000009439) #19	MYL1 (ENSCPOG00000009446) #20	ACADL (ENSCPOG00000009871) #21	KANSL1L (ENSCPOG00000001503) #22	ENSCPOG00000001502 #23	UNC80 (ENSCPOG00000008641) #24	ENSCPOG00000040677 #26	PTH2R (ENSCPOG00000027198) #30	PIKFYVE (ENSCPOG00000003863) #31	IDH1 (ENSCPOG00000013587) #32	C2orf80 (ENSCPOG00000015050) #33	CRYGA (ENSCPOG00000015047)	ENSCPOG00000022025	CRYGC (ENSCPOG00000000186) #35	PLEKHM3 (ENSCPOG00000004119)	FZD5 (ENSCPOG00000038146)	ENSCPOG00000035156	METTL21A (ENSCPOG00000034803)	CREB1 (ENSCPOG00000010778)
Hystricomorpha_b	ANCESTRAL SPECIES	52			ENSGT00390000008926	ENSGT00940000155126 #8	ENSGT00390000004553 #9	ENSGT00940000157295 #11	ENSGT00940000156532 #12	ENSGT00720000108792.B #13	ENSGT00940000155053 #14	ENSGT00940000157137 #16	ENSGT00940000154695 #17	ENSGT00940000157192 #18	ENSGT00530000063186.b.b #19	ENSGT01030000234570.d.a #20	ENSGT00940000157652 #21	ENSGT00530000063688.a #22	ENSGT00390000001447 #23	ENSGT00640000091496 #24	ENSGT00940000156597.b #26	ENSGT00940000159094 #30	ENSGT00940000156307.b #31	ENSGT00390000012547.b.d #32	ENSGT00390000004840 #33	ENSGT00940000156190.h	ENSGT00940000156190.g	ENSGT00940000159232.h.b #35	ENSGT00940000159743	ENSGT00940000162639	ENSGT00940000154453.b.b	ENSGT00940000157249	ENSGT00940000155408
Long-tailed chinchilla	MODERN SPECIES	164			MREG (ENSCLAG00000005783)	FN1 (ENSCLAG00000004804) #8	ATIC (ENSCLAG00000008276) #9	ABCA12 (ENSCLAG00000006672) #11	BARD1 (ENSCLAG00000007649) #12	VWC2L (ENSCLAG00000004321) #13	ENSCLAG00000004744 #14	IKZF2 (ENSCLAG00000003632) #16	ERBB4 (ENSCLAG00000006948) #17	CPS1 (ENSCLAG00000003104) #18	LANCL1 (ENSCLAG00000005272) #19	MYL1 (ENSCLAG00000004096) #20	ACADL (ENSCLAG00000004230) #21	KANSL1L (ENSCLAG00000005749) #22	ENSCLAG00000003444 #23	UNC80 (ENSCLAG00000004587) #24	MAP2 (ENSCLAG00000003473) #26	ENSCLAG00000003083	PTH2R (ENSCLAG00000003358) #30	PIKFYVE (ENSCLAG00000005225) #31	IDH1 (ENSCLAG00000013186) #32	C2orf80 (ENSCLAG00000012137) #33	CRYGA (ENSCLAG00000013039)	ENSCLAG00000010298	CRYGC (ENSCLAG00000010342) #35	PLEKHM3 (ENSCLAG00000010825)	FZD5 (ENSCLAG00000008821)	ENSCLAG00000004502	ENSCLAG00000005432
Degu	MODERN SPECIES	57	ENSODEG00000008221 #12	ENSODEG00000009279	VWC2L (ENSODEG00000008549) #13	ENSODEG00000007901	ENSODEG00000008353	ENSODEG00000008509 #14	IKZF2 (ENSODEG00000008010) #16	ERBB4 (ENSODEG00000009033) #17	ENSODEG00000013776	ENSODEG00000008980	CPS1 (ENSODEG00000007917) #18	ENSODEG00000008576	LANCL1 (ENSODEG00000013138) #19	MYL1 (ENSODEG00000007814) #20	ACADL (ENSODEG00000008088) #21	KANSL1L (ENSODEG00000008832) #22	ENSODEG00000008423 #23	UNC80 (ENSODEG00000009853) #24	MAP2 (ENSODEG00000009342) #26	ENSODEG00000019840	ENSODEG00000019756	PTH2R (ENSODEG00000010800) #30	PIKFYVE (ENSODEG00000008877) #31	ENSODEG00000009512 #32	C2orf80 (ENSODEG00000009684) #33	CRYGA (ENSODEG00000009878)	ENSODEG00000009966	CRYGC (ENSODEG00000008672) #35	ENSODEG00000019682	ENSODEG00000019703	PLEKHM3 (ENSODEG00000010028)
Lagomorpha	ANCESTRAL SPECIES	13	ENSGT00940000156882	ENSGT00390000008926	ENSGT00940000155126 #8	ENSGT00390000004553 #9	ENSGT00940000157295 #11	ENSGT00940000156532 #12	ENSGT00720000108792.B #13	ENSGT00940000155053 #14	ENSGT00940000157137 #16	ENSGT00390000002231.d.b	ENSGT00940000154695 #17	ENSGT00940000157192 #18	ENSGT00530000063186.b.b.b #19	ENSGT01030000234570.d.a #20	ENSGT00940000157652 #21	ENSGT00530000063688.a #22	ENSGT00390000001447 #23	ENSGT00640000091496 #24	ENSGT00940000156597.b #26	ENSGT00940000158720.c.b ##34	ENSGT00940000156307.b #31	ENSGT00390000012547.b #32	ENSGT00390000004840 #33	ENSGT00940000156190.h	ENSGT00940000158720.d #34	ENSGT00940000158720.c.a ##34	ENSGT00940000159743	ENSGT00940000162639	ENSGT00940000154453.b.a.a	ENSGT00940000157249	ENSGT00940000155408
Rabbit	MODERN SPECIES	18	ABCA12 (ENSOCUG00000017926) #11	BARD1 (ENSOCUG00000001552) #12	VWC2L (ENSOCUG00000014302) #13	ENSOCUG00000032906	SPAG16 (ENSOCUG00000014285) #14	ENSOCUG00000037270	IKZF2 (ENSOCUG00000007309) #16	ENSOCUG00000034291	ENSOCUG00000036328	ERBB4 (ENSOCUG00000009790) #17	ENSOCUG00000021317	ENSOCUG00000034876	CPS1 (ENSOCUG00000017716) #18	LANCL1 (ENSOCUG00000017711) #19	MYL1 (ENSOCUG00000014182) #20	KANSL1L (ENSOCUG00000017001) #22	ENSOCUG00000016995 #23	UNC80 (ENSOCUG00000016966) #24	MAP2 (ENSOCUG00000005163) #26	ENSOCUG00000010967 ##34	ENSOCUG00000037560	PIKFYVE (ENSOCUG00000002676) #31	IDH1 (ENSOCUG00000002671) #32	ENSOCUG00000034990	C2orf80 (ENSOCUG00000010976) #33	CRYGA (ENSOCUG00000010973)	CRYGD (ENSOCUG00000029414) ##34	PLEKHM3 (ENSOCUG00000015383)	ENSOCUG00000036167	FZD5 (ENSOCUG00000027916)	ENSOCUG00000015013
Pika	MODERN SPECIES	2225															ACADL (ENSOPRG00000005245) #21	KANSL1L (ENSOPRG00000005223) #22	ENSOPRG00000005213 #23	ENSOPRG00000005140 #24	ENSOPRG00000005117 #24
Tree shrew	MODERN SPECIES	2187																KANSL1L (ENSTBEG00000011183) #22	ENSTBEG00000010833 #23	ENSTBEG00000017721 #24
Primates	ANCESTRAL SPECIES	13	ENSGT00940000156882	ENSGT00390000008926	ENSGT00940000155126 #8	ENSGT00390000004553 #9	ENSGT00940000157295 #11	ENSGT00940000156532 #12	ENSGT00720000108792.B #13	ENSGT00940000155053 #14	ENSGT00940000157137 #16	ENSGT00390000002231.d.b	ENSGT00940000154695 #17	ENSGT00940000157192 #18	ENSGT00530000063186.b.b #19	ENSGT01030000234570.d.a #20	ENSGT00940000157652 #21	ENSGT00530000063688.a #22	ENSGT00390000001447 #23	ENSGT00640000091496 #24	ENSGT00940000156597.b #26	ENSGT00940000159094 #30	ENSGT00940000156307.b #31	ENSGT00390000012547.b #32	ENSGT00390000004840 #33	ENSGT00940000156190.h	ENSGT00940000159232.h.a ##35	ENSGT00940000159232.h.b #35	ENSGT00940000158720.c.a ##34	ENSGT00940000158720.c.b ##34	ENSGT00940000159743	ENSGT00940000162639	ENSGT00940000154453.b.a.b
Haplorrhini	ANCESTRAL SPECIES	10	ENSGT00940000156882	ENSGT00390000008926	ENSGT00940000155126 #8	ENSGT00390000004553 #9	ENSGT00940000157295 #11	ENSGT00940000156532 #12	ENSGT00720000108792.B #13	ENSGT00940000155053 #14	ENSGT00940000157137 #16	ENSGT00390000002231.d.b	ENSGT00940000154695 #17	ENSGT00940000157192 #18	ENSGT00530000063186.b.b #19	ENSGT01030000234570.d.a #20	ENSGT00940000157652 #21	ENSGT00530000063688.a #22	ENSGT00390000001447 #23	ENSGT00640000091496 #24	ENSGT00940000156597.b #26	ENSGT00940000159094 #30	ENSGT00940000156307.b #31	ENSGT00390000012547.b #32	ENSGT00390000004840 #33	ENSGT00940000156190.h	ENSGT00940000159232.h.a ##35	ENSGT00940000159232.h.b #35	ENSGT00940000158720.c.a ##34	ENSGT00940000158720.c.b ##34	ENSGT00940000159743	ENSGT00940000162639	ENSGT00940000154453.b.a.b
Simiiformes	ANCESTRAL SPECIES	15	ENSGT00390000008926	ENSGT00940000155126 #8	ENSGT00390000004553 #9	ENSGT00940000157295 #11	ENSGT00940000156532 #12	ENSGT00720000108792.B #13	ENSGT00940000155053 #14	ENSGT00940000157137 #16	ENSGT00390000002231.d.b	ENSGT00940000154695 #17	ENSGT00940000157192 #18	ENSGT00910000147691	ENSGT00530000063186.b.b #19	ENSGT01030000234570.d.a #20	ENSGT00940000157652 #21	ENSGT00530000063688.a #22	ENSGT00390000001447 #23	ENSGT00640000091496 #24	ENSGT00940000156597.b #26	ENSGT00940000159094 #30	ENSGT00940000156307.b #31	ENSGT00390000012547.b.b.b #32	ENSGT00390000004840 #33	ENSGT00940000156190.h	ENSGT00940000159232.h.a ##35	ENSGT00940000159232.h.b #35	ENSGT00940000158720.c.a ##34	ENSGT00940000158720.c.b ##34	ENSGT00940000159743	ENSGT00940000161191.B	ENSGT00910000146869
Catarrhini	ANCESTRAL SPECIES	16	ENSGT00940000155126 #8	ENSGT00390000004553 #9	ENSGT00940000157295 #11	ENSGT00940000156532 #12	ENSGT00720000108792.B #13	ENSGT00940000155053 #14	ENSGT00940000157137 #16	ENSGT00390000002231.d.b	ENSGT00940000154695 #17	ENSGT00940000157192 #18	ENSGT00910000147691	ENSGT00530000063186.b.b #19	ENSGT01030000234570.d.a #20	ENSGT00910000147420	ENSGT00940000157652 #21	ENSGT00530000063688.a #22	ENSGT00390000001447.p.b #23	ENSGT00640000091496 #24	ENSGT00940000156597.b #26	ENSGT00390000015257.s.a	ENSGT00940000159094 #30	ENSGT00940000156307.b #31	ENSGT00390000012547.b.b.b #32	ENSGT00390000004840 #33	ENSGT00940000156190.h	ENSGT00940000159232.h.a ##35	ENSGT00940000159232.h.b #35	ENSGT00940000158720.c.a ##34	ENSGT00940000158720.c.b ##34	ENSGT00940000159743	ENSGT00910000147537
Hominoidea	ANCESTRAL SPECIES	15	ENSGT00390000008926	ENSGT00940000155126 #8	ENSGT00390000004553 #9	ENSGT00940000157295 #11	ENSGT00940000156532 #12	ENSGT00720000108792.B #13	ENSGT00940000155053 #14	ENSGT00940000157137 #16	ENSGT00390000002231.d.b	ENSGT00940000154695 #17	ENSGT00940000157192 #18	ENSGT00530000063186.b.b #19	ENSGT01030000234570.d.a #20	ENSGT00910000147420	ENSGT00940000157652 #21	ENSGT00530000063688.a #22	ENSGT00390000001447.p.b #23	ENSGT00640000091496 #24	ENSGT00940000156597.b #26	ENSGT00940000159094 #30	ENSGT00940000156307.b #31	ENSGT00390000012547.b.b.b #32	ENSGT00390000004840 #33	ENSGT00940000156190.h	ENSGT00940000159232.h.a ##35	ENSGT00940000159232.h.b #35	ENSGT00940000158720.c.a ##34	ENSGT00940000158720.c.b ##34	ENSGT00940000159743	ENSGT00910000147537	ENSGT00910000146869
Hominidae	ANCESTRAL SPECIES	17	ENSGT00390000008926	ENSGT00940000155126 #8	ENSGT00390000004553 #9	ENSGT00940000157295 #11	ENSGT00940000156532 #12	ENSGT00720000108792.B #13	ENSGT00940000155053 #14	ENSGT00940000157137 #16	ENSGT00390000002231.d.b	ENSGT00940000154695 #17	ENSGT00940000157192 #18	ENSGT00530000063186.b.b #19	ENSGT01030000234570.d.a #20	ENSGT00910000147420	ENSGT00940000157652 #21	ENSGT00530000063688.a #22	ENSGT00390000001447.q #23	ENSGT00640000091496 #24	ENSGT00940000156597.b #26	ENSGT00940000159094 #30	ENSGT00940000156307.b #31	ENSGT00390000012547.b.b.b #32	ENSGT00390000004840 #33	ENSGT00940000156190.h	ENSGT00940000159232.h.a ##35	ENSGT00940000159232.h.b #35	ENSGT00940000158720.c.a ##34	ENSGT00940000158720.c.b ##34	ENSGT00940000159743	ENSGT00910000146869	ENSGT00910000147537
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	14	ENSGT00390000008926	ENSGT00940000155126 #8	ENSGT00390000004553 #9	ENSGT00940000157295 #11	ENSGT00940000156532 #12	ENSGT00720000108792.B #13	ENSGT00940000155053 #14	ENSGT00940000157137 #16	ENSGT00910000148020	ENSGT00940000154695 #17	ENSGT00940000157192 #18	ENSGT00530000063186.b.b #19	ENSGT01030000234570.d.a #20	ENSGT00910000147420	ENSGT00940000157652 #21	ENSGT00530000063688.a #22	ENSGT00390000001447.q #23	ENSGT00390000001447.p.b #23	ENSGT00640000091496 #24	ENSGT00940000156597.b #26	ENSGT00940000159094 #30	ENSGT00940000156307.b #31	ENSGT00390000012547.b.b.b #32	ENSGT00390000004840 #33	ENSGT00940000156190.h	ENSGT00940000159232.h.a ##35	ENSGT00940000159232.h.b #35	ENSGT00940000158720.c.a ##34	ENSGT00940000158720.c.b ##34	ENSGT00940000159743	ENSGT00910000146869
Homo/Pan group	ANCESTRAL SPECIES	13	ENSGT00390000008926	ENSGT00940000155126 #8	ENSGT00390000004553 #9	ENSGT00940000157295 #11	ENSGT00940000156532 #12	ENSGT00720000108792.B #13	ENSGT00940000155053 #14	ENSGT00940000157137 #16	ENSGT00910000148020	ENSGT00940000154695 #17	ENSGT00940000157192 #18	ENSGT00530000063186.b.b #19	ENSGT01030000234570.d.a #20	ENSGT00910000147420	ENSGT00940000157652 #21	ENSGT00530000063688.a #22	ENSGT00390000001447.p.b #23	ENSGT00640000091496 #24	ENSGT00940000156597.b #26	ENSGT00940000159094 #30	ENSGT00940000156307.b #31	ENSGT00390000012547.b.b.b #32	ENSGT00390000004840 #33	ENSGT00940000156190.h	ENSGT00940000159232.h.a ##35	ENSGT00940000159232.h.b #35	ENSGT00940000158720.c.a ##34	ENSGT00940000158720.c.b ##34	ENSGT00940000159743	ENSGT00910000146869	ENSGT00910000147537
Pan	ANCESTRAL SPECIES	12	ENSGT00390000008926	ENSGT00940000155126 #8	ENSGT00390000004553 #9	ENSGT00940000157295 #11	ENSGT00940000156532 #12	ENSGT00720000108792.B #13	ENSGT00940000155053 #14	ENSGT00940000157137 #16	ENSGT00910000148020	ENSGT00940000154695 #17	ENSGT00940000157192 #18	ENSGT00530000063186.b.b #19	ENSGT01030000234570.d.a #20	ENSGT00910000147420	ENSGT00940000157652 #21	ENSGT00530000063688.a #22	ENSGT00390000001447.p.b #23	ENSGT00640000091496 #24	ENSGT00940000156597.b #26	ENSGT00940000159094 #30	ENSGT00940000156307.b #31	ENSGT00390000012547.b.b.b #32	ENSGT00390000004840 #33	ENSGT00940000156190.h	ENSGT00940000159232.h.a ##35	ENSGT00940000159232.h.b #35	ENSGT00940000158720.c.a ##34	ENSGT00940000158720.c.b ##34	ENSGT00940000159743	ENSGT00910000146869	ENSGT00910000147537
Chimpanzee	MODERN SPECIES	15	FN1 (ENSPTRG00000012892) #8	ATIC (ENSPTRG00000012891) #9	ABCA12 (ENSPTRG00000012889) #11	BARD1 (ENSPTRG00000012888) #12	VWC2L (ENSPTRG00000012886) #13	SPAG16 (ENSPTRG00000012885) #14	IKZF2 (ENSPTRG00000048797) #16	ENSPTRG00000050921	ERBB4 (ENSPTRG00000012883) #17	CPS1 (ENSPTRG00000012881) #18	LANCL1 (ENSPTRG00000012880) #19	MYL1 (ENSPTRG00000012879) #20	ENSPTRG00000044780	ACADL (ENSPTRG00000012876) #21	ENSPTRG00000043540	KANSL1L (ENSPTRG00000012875) #22	ENSPTRG00000048818 #23	UNC80 (ENSPTRG00000012873) #24	MAP2 (ENSPTRG00000012869) #26	PTH2R (ENSPTRG00000012868) #30	PIKFYVE (ENSPTRG00000012866) #31	IDH1 (ENSPTRG00000012865) #32	C2orf80 (ENSPTRG00000012863) #33	CRYGA (ENSPTRG00000012862)	CRYGB (ENSPTRG00000012861) ##35	CRYGC (ENSPTRG00000012859) #35	CRYGD (ENSPTRG00000012858) ##34	ENSPTRG00000049376 ##34	PLEKHM3 (ENSPTRG00000012857)	ENSPTRG00000043594	ENSPTRG00000049925
Bonobo	MODERN SPECIES	15	MREG (ENSPPAG00000024976)	FN1 (ENSPPAG00000041188) #8	ATIC (ENSPPAG00000031346) #9	ABCA12 (ENSPPAG00000027092) #11	BARD1 (ENSPPAG00000043112) #12	VWC2L (ENSPPAG00000037418) #13	SPAG16 (ENSPPAG00000043643) #14	IKZF2 (ENSPPAG00000041873) #16	ENSPPAG00000023325	ERBB4 (ENSPPAG00000041527) #17	CPS1 (ENSPPAG00000037514) #18	LANCL1 (ENSPPAG00000039753) #19	MYL1 (ENSPPAG00000032667) #20	ENSPPAG00000009402	ACADL (ENSPPAG00000035916) #21	KANSL1L (ENSPPAG00000038917) #22	ENSPPAG00000034521 #23	UNC80 (ENSPPAG00000038207) #24	MAP2 (ENSPPAG00000042145) #26	PTH2R (ENSPPAG00000000087) #30	PIKFYVE (ENSPPAG00000038724) #31	IDH1 (ENSPPAG00000039215) #32	C2orf80 (ENSPPAG00000035033) #33	CRYGA (ENSPPAG00000038408)	CRYGB (ENSPPAG00000019473) ##35	CRYGC (ENSPPAG00000029445) #35	CRYGD (ENSPPAG00000030489) ##34	ENSPPAG00000019104 ##34	PLEKHM3 (ENSPPAG00000028938)	ENSPPAG00000034737	ENSPPAG00000004988
Human	MODERN SPECIES	11	TMEM169 (ENSG00000163449)	PECR (ENSG00000115425)	MREG (ENSG00000118242)	FN1 (ENSG00000115414) #8	ATIC (ENSG00000138363) #9	ABCA12 (ENSG00000144452) #11	BARD1 (ENSG00000138376) #12	VWC2L (ENSG00000174453) #13	SPAG16 (ENSG00000144451) #14	IKZF2 (ENSG00000030419) #16	ERBB4 (ENSG00000178568) #17	CPS1 (ENSG00000021826) #18	LANCL1 (ENSG00000115365) #19	MYL1 (ENSG00000168530) #20	ACADL (ENSG00000115361) #21	KANSL1L (ENSG00000144445) #22	RPE (ENSG00000197713) #23	UNC80 (ENSG00000144406) #24	MAP2 (ENSG00000078018) #26	PTH2R (ENSG00000144407) #30	PIKFYVE (ENSG00000115020) #31	IDH1 (ENSG00000138413) #32	C2orf80 (ENSG00000188674) #33	CRYGA (ENSG00000168582)	CRYGB (ENSG00000182187) ##35	CRYGC (ENSG00000163254) #35	CRYGD (ENSG00000118231) ##34	PLEKHM3 (ENSG00000178385)	FZD5 (ENSG00000163251)	CCNYL1 (ENSG00000163249)	METTL21A (ENSG00000144401)
Gorilla	MODERN SPECIES	15	MREG (ENSGGOG00000027103)	FN1 (ENSGGOG00000015010) #8	ATIC (ENSGGOG00000007916) #9	ABCA12 (ENSGGOG00000011952) #11	BARD1 (ENSGGOG00000014597) #12	VWC2L (ENSGGOG00000016106) #13	SPAG16 (ENSGGOG00000043689) #14	IKZF2 (ENSGGOG00000011301) #16	ENSGGOG00000039432	ERBB4 (ENSGGOG00000014309) #17	CPS1 (ENSGGOG00000028226) #18	LANCL1 (ENSGGOG00000041237) #19	MYL1 (ENSGGOG00000011991) #20	ENSGGOG00000036486	ACADL (ENSGGOG00000006541) #21	KANSL1L (ENSGGOG00000011150) #22	ENSGGOG00000043889 #23	UNC80 (ENSGGOG00000010917) #24	MAP2 (ENSGGOG00000027310) #26	ENSGGOG00000028471 ##34	PTH2R (ENSGGOG00000016959) #30	PIKFYVE (ENSGGOG00000012992) #31	IDH1 (ENSGGOG00000012619) #32	C2orf80 (ENSGGOG00000004332) #33	CRYGA (ENSGGOG00000022179)	CRYGB (ENSGGOG00000008895) ##35	CRYGC (ENSGGOG00000026944) #35	CRYGD (ENSGGOG00000027001) ##34	ENSGGOG00000040001 ##34	PLEKHM3 (ENSGGOG00000000998)	ENSGGOG00000043005
Orangutan	MODERN SPECIES	15	FN1 (ENSPPYG00000013148) #8	ATIC (ENSPPYG00000013146) #9	ABCA12 (ENSPPYG00000013145) #11	BARD1 (ENSPPYG00000013144) #12	VWC2L (ENSPPYG00000013143) #13	ENSPPYG00000034405	SPAG16 (ENSPPYG00000013141) #14	IKZF2 (ENSPPYG00000013139) #16	ENSPPYG00000035873	ERBB4 (ENSPPYG00000013138) #17	CPS1 (ENSPPYG00000013137) #18	LANCL1 (ENSPPYG00000033825) #19	MYL1 (ENSPPYG00000013135) #20	ENSPPYG00000013134	ACADL (ENSPPYG00000037453) #21	KANSL1L (ENSPPYG00000013133) #22	RPE (ENSPPYG00000030957) #23	UNC80 (ENSPPYG00000013131) #24	MAP2 (ENSPPYG00000013128) #26	PTH2R (ENSPPYG00000013127) #30	PIKFYVE (ENSPPYG00000013126) #31	IDH1 (ENSPPYG00000013125) #32	C2BH2orf80 (ENSPPYG00000013124) #33	CRYGA (ENSPPYG00000031928)	CRYGB (ENSPPYG00000013386) ##35	CRYGC (ENSPPYG00000035452) #35	ENSPPYG00000040257 ##34	PLEKHM3 (ENSPPYG00000013121)	ENSPPYG00000013120	FZD5 (ENSPPYG00000013119)	CCNYL1 (ENSPPYG00000013118)
Gibbon	MODERN SPECIES	14	PECR (ENSNLEG00000007265)	MREG (ENSNLEG00000007262)	FN1 (ENSNLEG00000007224) #8	ATIC (ENSNLEG00000007215) #9	ABCA12 (ENSNLEG00000007208) #11	BARD1 (ENSNLEG00000007205) #12	VWC2L (ENSNLEG00000007204) #13	SPAG16 (ENSNLEG00000007201) #14	IKZF2 (ENSNLEG00000031188) #16	ERBB4 (ENSNLEG00000007195) #17	CPS1 (ENSNLEG00000007187) #18	LANCL1 (ENSNLEG00000007182) #19	MYL1 (ENSNLEG00000007180) #20	ENSNLEG00000007179	ACADL (ENSNLEG00000007175) #21	ENSNLEG00000007174 #22	ENSNLEG00000027381 #23	UNC80 (ENSNLEG00000007162) #24	MAP2 (ENSNLEG00000007156) #26	ENSNLEG00000035981 ##34	PTH2R (ENSNLEG00000007155) #30	PIKFYVE (ENSNLEG00000007150) #31	IDH1 (ENSNLEG00000007143) #32	ENSNLEG00000007142 #33	CRYGA (ENSNLEG00000007141)	CRYGB (ENSNLEG00000007137) ##35	CRYGC (ENSNLEG00000007139) #35	ENSNLEG00000035688 ##34	PLEKHM3 (ENSNLEG00000007136)	ENSNLEG00000032494	ENSNLEG00000031847
Cercopithecidae	ANCESTRAL SPECIES	13	ENSGT00940000155126 #8	ENSGT00390000004553 #9	ENSGT00940000157295 #11	ENSGT00940000156532 #12	ENSGT00720000108792.B #13	ENSGT00940000155053 #14	ENSGT00940000157137 #16	ENSGT00390000002231.d.b	ENSGT00940000154695 #17	ENSGT00940000157192 #18	ENSGT00910000147691	ENSGT00530000063186.b.b #19	ENSGT01030000234570.d.a #20	ENSGT00910000147420	ENSGT00940000157652 #21	ENSGT00530000063688.a #22	ENSGT00390000001447.q #23	ENSGT00390000001447.p.b #23	ENSGT00640000091496 #24	ENSGT00940000156597.b #26	ENSGT00390000015257.s.a	ENSGT00940000159094 #30	ENSGT00940000156307.b #31	ENSGT00390000012547.b.b.b #32	ENSGT00390000004840 #33	ENSGT00940000156190.h	ENSGT00940000159232.h.a ##35	ENSGT00940000159232.h.b #35	ENSGT00940000158720.c.a ##34	ENSGT00940000158720.c.b ##34	ENSGT00940000159743
Cercopithecinae	ANCESTRAL SPECIES	11	ENSGT00940000156882	ENSGT00390000008926	ENSGT00940000155126 #8	ENSGT00390000004553 #9	ENSGT00940000157295 #11	ENSGT00940000156532 #12	ENSGT00720000108792.B #13	ENSGT00940000155053 #14	ENSGT00940000157137 #16	ENSGT00390000002231.d.b	ENSGT00940000154695 #17	ENSGT00940000157192 #18	ENSGT00530000063186.b.b #19	ENSGT01030000234570.d.a #20	ENSGT00940000157652 #21	ENSGT00530000063688.a #22	ENSGT00390000001447.q #23	ENSGT00640000091496 #24	ENSGT00940000156597.b #26	ENSGT00390000015257.s.a	ENSGT00940000159094 #30	ENSGT00940000156307.b #31	ENSGT00390000012547.b.b.b #32	ENSGT00390000004840 #33	ENSGT00940000156190.h	ENSGT00940000159232.h.a ##35	ENSGT00940000159232.h.b #35	ENSGT00940000158720.c.a ##34	ENSGT00940000158720.c.b ##34	ENSGT00940000159743	ENSGT00910000147537
Cercopithecinae_a	ANCESTRAL SPECIES	16	ENSGT00940000156882	ENSGT00390000008926	ENSGT00940000155126 #8	ENSGT00390000004553 #9	ENSGT00940000157295 #11	ENSGT00940000156532 #12	ENSGT00720000108792.B #13	ENSGT00940000155053 #14	ENSGT00940000157137 #16	ENSGT00390000002231.d.b	ENSGT00940000154695 #17	ENSGT00940000157192 #18	ENSGT00530000063186.b.b #19	ENSGT01030000234570.d.a #20	ENSGT00940000157652 #21	ENSGT00530000063688.a #22	ENSGT00910000148013	ENSGT00390000001447.p.b #23	ENSGT00640000091496 #24	ENSGT00940000156597.b #26	ENSGT00390000015257.s.a	ENSGT00940000159094 #30	ENSGT00940000156307.b #31	ENSGT00390000012547.b.b.b #32	ENSGT00390000004840 #33	ENSGT00940000156190.h	ENSGT00940000159232.h.a ##35	ENSGT00940000159232.h.b #35	ENSGT00940000158720.c.a ##34	ENSGT00940000158720.c.b ##34	ENSGT00940000159743
Macaca	ANCESTRAL SPECIES	15	ENSGT00390000015276	ENSGT00940000156882	ENSGT00390000008926	ENSGT00940000155126 #8	ENSGT00390000004553 #9	ENSGT00940000157295 #11	ENSGT00940000156532 #12	ENSGT00720000108792.B #13	ENSGT00940000155053 #14	ENSGT00940000157137 #16	ENSGT00940000154695 #17	ENSGT00940000157192 #18	ENSGT00530000063186.b.b #19	ENSGT01030000234570.d.a #20	ENSGT00940000157652 #21	ENSGT00530000063688.a #22	ENSGT00910000148013	ENSGT00390000001447.p.b #23	ENSGT00640000091496 #24	ENSGT00940000156597.b #26	ENSGT00950000183099.u.a.e.i.a	ENSGT00940000159094 #30	ENSGT00940000156307.b #31	ENSGT00390000012547.b.b.b #32	ENSGT00390000004840 #33	ENSGT00940000156190.h	ENSGT00940000159232.h.a ##35	ENSGT00940000159232.h.b #35	ENSGT00940000158720.c.a ##34	ENSGT00940000158720.c.b ##34	ENSGT00940000159743
Macaca_a	ANCESTRAL SPECIES	17	ENSGT00940000153239.A	ENSGT00390000015276	ENSGT00940000156882	ENSGT00940000155126 #8	ENSGT00390000004553 #9	ENSGT00940000157295 #11	ENSGT00940000156532 #12	ENSGT00720000108792.B #13	ENSGT00940000155053 #14	ENSGT00940000157137 #16	ENSGT00390000002231.d.b	ENSGT00940000154695 #17	ENSGT00940000157192 #18	ENSGT00530000063186.b.b #19	ENSGT01030000234570.d.a #20	ENSGT00530000063688.a #22	ENSGT00390000001447.q #23	ENSGT00640000091496 #24	ENSGT00940000156597.b #26	ENSGT00950000183099.u.a.e.i.a	ENSGT00960000191503.d	ENSGT00940000159094 #30	ENSGT00940000156307.b #31	ENSGT00390000012547.b.b.b #32	ENSGT00390000004840 #33	ENSGT00940000156190.h	ENSGT00940000159232.h.a ##35	ENSGT00940000159232.h.b #35	ENSGT00940000158720.c.a ##34	ENSGT00940000158720.c.b ##34	ENSGT00940000159743
Crab-eating macaque	MODERN SPECIES	3	ENSMFAG00000055847	FN1 (ENSMFAG00000032168) #8	ATIC (ENSMFAG00000044630) #9	ABCA12 (ENSMFAG00000041527) #11	BARD1 (ENSMFAG00000032566) #12	VWC2L (ENSMFAG00000004450) #13	ENSMFAG00000056823	SPAG16 (ENSMFAG00000036303) #14	IKZF2 (ENSMFAG00000049387) #16	ENSMFAG00000059453	ENSMFAG00000047331	ERBB4 (ENSMFAG00000042352) #17	CPS1 (ENSMFAG00000044079) #18	LANCL1 (ENSMFAG00000041765) #19	MYL1 (ENSMFAG00000031549) #20	KANSL1L (ENSMFAG00000031878) #22	ENSMFAG00000001492 #23	UNC80 (ENSMFAG00000038823) #24	MAP2 (ENSMFAG00000037191) #26	ENSMFAG00000040051	ENSMFAG00000049469	PTH2R (ENSMFAG00000000697) #30	PIKFYVE (ENSMFAG00000041669) #31	IDH1 (ENSMFAG00000037839) #32	C2orf80 (ENSMFAG00000003892) #33	CRYGB (ENSMFAG00000052040) ##35	CRYGC (ENSMFAG00000047676) #35	CRYGD (ENSMFAG00000052291) ##34	ENSMFAG00000065752 ##34	ENSMFAG00000064501	PLEKHM3 (ENSMFAG00000033450)
Rhesus	MODERN SPECIES	3	FN1 (ENSMMUG00000012321) #8	ATIC (ENSMMUG00000012318) #9	ABCA12 (ENSMMUG00000014813) #11	BARD1 (ENSMMUG00000005700) #12	VWC2L (ENSMMUG00000054519) #13	ENSMMUG00000065281	ENSMMUG00000064880	SPAG16 (ENSMMUG00000000382) #14	IKZF2 (ENSMMUG00000000381) #16	ENSMMUG00000061342	ENSMMUG00000058114	ERBB4 (ENSMMUG00000001674) #17	CPS1 (ENSMMUG00000010508) #18	LANCL1 (ENSMMUG00000054937) #19	MYL1 (ENSMMUG00000010519) #20	KANSL1L (ENSMMUG00000010515) #22	RPE (ENSMMUG00000010513) #23	UNC80 (ENSMMUG00000002809) #24	MAP2 (ENSMMUG00000018741) #26	ENSMMUG00000004941	ENSMMUG00000051180	PTH2R (ENSMMUG00000005295) #30	PIKFYVE (ENSMMUG00000017524) #31	IDH1 (ENSMMUG00000016077) #32	C12H2orf80 (ENSMMUG00000014299) #33	CRYGA (ENSMMUG00000049611)	CRYGB (ENSMMUG00000010871) ##35	CRYGC (ENSMMUG00000056938) #35	CRYGD (ENSMMUG00000052742) ##34	ENSMMUG00000045625 ##34	ENSMMUG00000059636
Pig-tailed macaque	MODERN SPECIES	570	FN1 (ENSMNEG00000029457) #8	ATIC (ENSMNEG00000033660) #9	ABCA12 (ENSMNEG00000031040) #11	BARD1 (ENSMNEG00000042003) #12	VWC2L (ENSMNEG00000044264) #13	SPAG16 (ENSMNEG00000033132) #14	IKZF2 (ENSMNEG00000031320) #16	ERBB4 (ENSMNEG00000041797) #17	ENSMNEG00000017162	ENSMNEG00000034167	CPS1 (ENSMNEG00000035547) #18	LANCL1 (ENSMNEG00000029637) #19	MYL1 (ENSMNEG00000036767) #20	ACADL (ENSMNEG00000012188) #21	ENSMNEG00000014156	KANSL1L (ENSMNEG00000035464) #22	ENSMNEG00000040500 #23	UNC80 (ENSMNEG00000035845) #24	MAP2 (ENSMNEG00000038593) #26	ENSMNEG00000036977 ##34
Cercopithecinae_b	ANCESTRAL SPECIES	10	ENSGT00940000156882	ENSGT00390000008926	ENSGT00940000155126 #8	ENSGT00390000004553 #9	ENSGT00940000157295 #11	ENSGT00940000156532 #12	ENSGT00720000108792.B #13	ENSGT00940000155053 #14	ENSGT00940000157137 #16	ENSGT00940000154695 #17	ENSGT00940000157192 #18	ENSGT00530000063186.b.b #19	ENSGT00510000046986.n.a.d.b	ENSGT01030000234570.d.a #20	ENSGT00940000157652 #21	ENSGT00530000063688.a #22	ENSGT00910000148013	ENSGT00390000001447.p.b #23	ENSGT00640000091496 #24	ENSGT00940000156597.b #26	ENSGT00390000015257.s.a	ENSGT00940000159094 #30	ENSGT00940000156307.b #31	ENSGT00390000012547.b.b.b #32	ENSGT00390000004840 #33	ENSGT00940000156190.h	ENSGT00940000159232.h.a ##35	ENSGT00940000159232.h.b #35	ENSGT00940000158720.c.a ##34	ENSGT00940000158720.c.b ##34	ENSGT00940000159743
Olive baboon	MODERN SPECIES	1	FN1 (ENSPANG00000005725) #8	ATIC (ENSPANG00000012147) #9	ABCA12 (ENSPANG00000005668) #11	BARD1 (ENSPANG00000019723) #12	VWC2L (ENSPANG00000046744) #13	ENSPANG00000037591	SPAG16 (ENSPANG00000011416) #14	IKZF2 (ENSPANG00000016694) #16	ENSPANG00000050738	ENSPANG00000048059	ERBB4 (ENSPANG00000020599) #17	CPS1 (ENSPANG00000008478) #18	LANCL1 (ENSPANG00000043351) #19	ENSPANG00000050010	MYL1 (ENSPANG00000005181) #20	KANSL1L (ENSPANG00000000746) #22	ENSPANG00000005182 #23	UNC80 (ENSPANG00000024759) #24	MAP2 (ENSPANG00000019944) #26	ENSPANG00000051073	ENSPANG00000039642	PTH2R (ENSPANG00000002436) #30	PIKFYVE (ENSPANG00000010442) #31	C2orf80 (ENSPANG00000033159) #33	IDH1 (ENSPANG00000005239) #32	CRYGB (ENSPANG00000049951) ##35	CRYGC (ENSPANG00000051332) #35	CRYGD (ENSPANG00000039491) ##34	ENSPANG00000040505	ENSPANG00000041891 ##34	PLEKHM3 (ENSPANG00000020994)
Cercopithecinae_d	ANCESTRAL SPECIES		ENSGT00940000155126 #8	ENSGT00390000004553 #9	ENSGT00940000157295 #11	ENSGT00940000156532 #12	ENSGT00720000108792.B #13	ENSGT00940000155053 #14	ENSGT00940000157137 #16	ENSGT00940000154695 #17	ENSGT00910000147161	ENSGT00910000147691	ENSGT00940000157192 #18	ENSGT00530000063186.b.b #19	ENSGT00510000046986.n.a.d.b	ENSGT01030000234570.d.a #20	ENSGT00940000157652 #21	ENSGT00530000063688.a #22	ENSGT00910000148013	ENSGT00390000001447.p.b #23	ENSGT00640000091496 #24	ENSGT00940000156597.b #26	ENSGT00390000015257.s.a	ENSGT00940000159094 #30	ENSGT00940000156307.b #31	ENSGT00390000012547.b.b.b #32	ENSGT00390000004840 #33	ENSGT00940000156190.h	ENSGT00940000159232.h.a ##35	ENSGT00940000159232.h.b #35	ENSGT00940000158720.c.a ##34	ENSGT00940000158720.c.b ##34	ENSGT00940000159743
Drill	MODERN SPECIES	1499										ENSMLEG00000011832	CPS1 (ENSMLEG00000038945) #18	LANCL1 (ENSMLEG00000033475) #19	ENSMLEG00000012488	MYL1 (ENSMLEG00000041044) #20	ACADL (ENSMLEG00000040139) #21	KANSL1L (ENSMLEG00000043267) #22	ENSMLEG00000033066 #23	UNC80 (ENSMLEG00000030480) #24	MAP2 (ENSMLEG00000031717) #26	ENSMLEG00000038774	ENSMLEG00000017306
Sooty mangabey	MODERN SPECIES	570	FN1 (ENSCATG00000034092) #8	ATIC (ENSCATG00000033414) #9	ABCA12 (ENSCATG00000042293) #11	BARD1 (ENSCATG00000043060) #12	VWC2L (ENSCATG00000039480) #13	SPAG16 (ENSCATG00000032997) #14	IKZF2 (ENSCATG00000029418) #16	ERBB4 (ENSCATG00000043272) #17	ENSCATG00000003304	CPS1 (ENSCATG00000033305) #18	LANCL1 (ENSCATG00000038900) #19	ENSCATG00000031803	MYL1 (ENSCATG00000044624) #20	ACADL (ENSCATG00000041550) #21	ENSCATG00000006457	KANSL1L (ENSCATG00000043995) #22	ENSCATG00000043868 #23	UNC80 (ENSCATG00000041534) #24	MAP2 (ENSCATG00000042916) #26	ENSCATG00000043850	PTH2R (ENSCATG00000037593) #30	PIKFYVE (ENSCATG00000033498) #31	IDH1 (ENSCATG00000042214) #32	C2orf80 (ENSCATG00000038326) #33	CRYGA (ENSCATG00000043962)	CRYGB (ENSCATG00000038743) ##35	CRYGC (ENSCATG00000036220) #35	CRYGD (ENSCATG00000037915) ##34	ENSCATG00000036671 ##34	PLEKHM3 (ENSCATG00000036070)	ENSCATG00000036323
Vervet Monkey	MODERN SPECIES	1	TMEM169 (ENSCSAG00000009111)	PECR (ENSCSAG00000009122)	MREG (ENSCSAG00000009131)	FN1 (ENSCSAG00000009162) #8	ABCA12 (ENSCSAG00000009303) #11	BARD1 (ENSCSAG00000009338) #12	VWC2L (ENSCSAG00000009346) #13	ENSCSAG00000009388 #14	IKZF2 (ENSCSAG00000009405) #16	ENSCSAG00000009457 #17	ENSCSAG00000009490 #17	CPS1 (ENSCSAG00000009759) #18	LANCL1 (ENSCSAG00000009844) #19	MYL1 (ENSCSAG00000009850) #20	ACADL (ENSCSAG00000009898) #21	KANSL1L (ENSCSAG00000009924) #22	ENSCSAG00000009931 #23	UNC80 (ENSCSAG00000009965) #24	MAP2 (ENSCSAG00000009974) #26	ENSCSAG00000009983 ##34	ENSCSAG00000018772	PTH2R (ENSCSAG00000010012) #30	PIKFYVE (ENSCSAG00000010033) #31	IDH1 (ENSCSAG00000010039) #32	C2orf80 (ENSCSAG00000010044) #33	CRYGA (ENSCSAG00000010050)	CRYGB (ENSCSAG00000010058) ##35	CRYGC (ENSCSAG00000010063) #35	CRYGD (ENSCSAG00000010066) ##34	PLEKHM3 (ENSCSAG00000010071)	FZD5 (ENSCSAG00000018771)
Rhinopithecus	ANCESTRAL SPECIES	73										ENSGT00940000157192 #18	ENSGT00910000147691	ENSGT00530000063186.b.b #19	ENSGT01030000234570.d.a.g #20	ENSGT00910000147420	ENSGT00940000157652 #21	ENSGT00530000063688.a #22	ENSGT00390000001447.p.b #23	ENSGT00640000091496 #24	ENSGT00940000156597.b #26	ENSGT00390000015257.s.a	ENSGT00940000159094 #30	ENSGT00940000156307.b #31	ENSGT00390000012547.b.b.b #32	ENSGT00390000004840 #33	ENSGT00940000156190.h	ENSGT00940000159232.h.a ##35	ENSGT00940000159232.h.b #35	ENSGT00940000158720.c.a ##34	ENSGT00940000158720.c.b ##34	ENSGT00940000159743	ENSGT00910000146869
Golden snub-nosed monkey	MODERN SPECIES	2972										CPS1 (ENSRROG00000032509) #18	ENSRROG00000034071	LANCL1 (ENSRROG00000028658) #19	MYL1 (ENSRROG00000013515) #20	ENSRROG00000028877	ACADL (ENSRROG00000007633) #21	KANSL1L (ENSRROG00000043604) #22	ENSRROG00000031409 #23	UNC80 (ENSRROG00000038924) #24	MAP2 (ENSRROG00000032681) #26
Black snub-nosed monkey	MODERN SPECIES	957											ENSRBIG00000040006	CPS1 (ENSRBIG00000034628) #18	LANCL1 (ENSRBIG00000041559) #19	MYL1 (ENSRBIG00000027883) #20	ACADL (ENSRBIG00000028829) #21	KANSL1L (ENSRBIG00000028308) #22	ENSRBIG00000004921 #23	UNC80 (ENSRBIG00000042926) #24	MAP2 (ENSRBIG00000028156) #26	ENSRBIG00000029420	PTH2R (ENSRBIG00000033118) #30	PIKFYVE (ENSRBIG00000044045) #31	IDH1 (ENSRBIG00000029262) #32	C2orf80 (ENSRBIG00000035852) #33	CRYGA (ENSRBIG00000043634)	CRYGB (ENSRBIG00000006661) ##35	CRYGC (ENSRBIG00000035767) #35	CRYGD (ENSRBIG00000036767) ##34	ENSRBIG00000038783 ##34	PLEKHM3 (ENSRBIG00000026856)	ENSRBIG00000031476
Platyrrhini	ANCESTRAL SPECIES	9	ENSGT00940000156882	ENSGT00390000008926	ENSGT00940000155126 #8	ENSGT00390000004553.m.a.b #9	ENSGT00940000157295 #11	ENSGT00940000156532 #12	ENSGT00720000108792.B #13	ENSGT00940000155053 #14	ENSGT00940000157137 #16	ENSGT00940000154695 #17	ENSGT00940000157192 #18	ENSGT00910000147691	ENSGT00530000063186.b.b #19	ENSGT01030000234570.d.a #20	ENSGT00940000157652 #21	ENSGT00530000063688.a #22	ENSGT00390000001447 #23	ENSGT00640000091496 #24	ENSGT00940000156597.b #26	ENSGT00940000159094 #30	ENSGT00940000156307.b #31	ENSGT00390000012547.b.b.a #32	ENSGT00390000004840 #33	ENSGT00940000156190.h	ENSGT00940000159232.h.a ##35	ENSGT00940000159232.h.b #35	ENSGT00940000158720.c.a ##34	ENSGT00940000158720.c.b ##34	ENSGT00940000159743	ENSGT00940000161191.B	ENSGT00910000146869
Cebidae	ANCESTRAL SPECIES	11	ENSGT00940000153239.A.a	ENSGT00390000015276	ENSGT00940000156882	ENSGT00390000008926	ENSGT00940000155126 #8	ENSGT00390000004553.m.a.b #9	ENSGT00940000157295 #11	ENSGT00940000156532 #12	ENSGT00720000108792.B #13	ENSGT00940000155053 #14	ENSGT00940000157137 #16	ENSGT00940000154695 #17	ENSGT00940000157192 #18	ENSGT00530000063186.b.b #19	ENSGT01030000234570.d.a #20	ENSGT00530000063688.a #22	ENSGT00390000001447 #23	ENSGT00640000091496 #24	ENSGT00940000156597.b #26	ENSGT00940000159094 #30	ENSGT00940000156307.b #31	ENSGT00390000012547.b.b.a #32	ENSGT00940000156150.f.a	ENSGT00390000004840 #33	ENSGT00940000156190.h	ENSGT00940000159232.h.a ##35	ENSGT00940000159232.h.b #35	ENSGT00940000158720.c.a ##34	ENSGT00940000158720.c.b ##34	ENSGT00940000159743	ENSGT00940000161191.B
Marmoset	MODERN SPECIES	18	BARD1 (ENSCJAG00000011473) #12	ENSCJAG00000040361	VWC2L (ENSCJAG00000052055) #13	ENSCJAG00000083858	ENSCJAG00000058419	ENSCJAG00000075827	ENSCJAG00000057539	SPAG16 (ENSCJAG00000011448) #14	IKZF2 (ENSCJAG00000043858) #16	ENSCJAG00000055705	ENSCJAG00000074375	ERBB4 (ENSCJAG00000011307) #17	CPS1 (ENSCJAG00000010985) #18	LANCL1 (ENSCJAG00000038860) #19	MYL1 (ENSCJAG00000010924) #20	KANSL1L (ENSCJAG00000010851) #22	ENSCJAG00000010822 #23	UNC80 (ENSCJAG00000010773) #24	MAP2 (ENSCJAG00000010689) #26	ENSCJAG00000010676	ENSCJAG00000082683	ENSCJAG00000075881	ENSCJAG00000071851	ENSCJAG00000002713	ENSCJAG00000041460	ENSCJAG00000079485	ENSCJAG00000060037	ENSCJAG00000038285	PTH2R (ENSCJAG00000002754) #30	PIKFYVE (ENSCJAG00000002759) #31	ENSCJAG00000075032
Cebidae_a	ANCESTRAL SPECIES	16	ENSGT00940000153239.A.a	ENSGT00390000015276	ENSGT00940000156882	ENSGT00390000008926	ENSGT00940000155126 #8	ENSGT00390000004553.m.a.b #9	ENSGT00940000157295 #11	ENSGT00940000156532 #12	ENSGT00720000108792.B #13	ENSGT00940000155053 #14	ENSGT00940000157137 #16	ENSGT00940000154695 #17	ENSGT00940000157192 #18	ENSGT00530000063186.b.b #19	ENSGT01030000234570.d.a #20	ENSGT00530000063688.a #22	ENSGT00390000001447 #23	ENSGT00640000091496 #24	ENSGT00940000156597.b #26	ENSGT00940000159094 #30	ENSGT00940000156307.b #31	ENSGT00390000012547.b.b.a #32	ENSGT00940000156150.f.a	ENSGT00390000004840 #33	ENSGT00940000156190.h	ENSGT00940000159232.h.a ##35	ENSGT00940000159232.h.b #35	ENSGT00940000158720.c.a ##34	ENSGT00940000158720.c.b ##34	ENSGT00940000159743	ENSGT00940000161191.B
Bolivian squirrel monkey	MODERN SPECIES	56	XRCC5 (ENSSBOG00000029325)	TMEM169 (ENSSBOG00000035035)	ENSSBOG00000022001	MREG (ENSSBOG00000030269)	FN1 (ENSSBOG00000030941) #8	ATIC (ENSSBOG00000035246) #9	ABCA12 (ENSSBOG00000021012) #11	BARD1 (ENSSBOG00000024817) #12	VWC2L (ENSSBOG00000027487) #13	SPAG16 (ENSSBOG00000028079) #14	IKZF2 (ENSSBOG00000020703) #16	ERBB4 (ENSSBOG00000030062) #17	CPS1 (ENSSBOG00000001070) #18	LANCL1 (ENSSBOG00000020922) #19	MYL1 (ENSSBOG00000033791) #20	KANSL1L (ENSSBOG00000033776) #22	ENSSBOG00000019098 #23	UNC80 (ENSSBOG00000036149) #24	MAP2 (ENSSBOG00000036242) #26	ENSSBOG00000025322	PTH2R (ENSSBOG00000022880) #30	PIKFYVE (ENSSBOG00000031867) #31	ENSSBOG00000025738 #32	C2orf80 (ENSSBOG00000020763) #33	CRYGA (ENSSBOG00000026091)	CRYGB (ENSSBOG00000023184) ##35	CRYGC (ENSSBOG00000026600) #35	ENSSBOG00000020159 ##34	PLEKHM3 (ENSSBOG00000027559)	ENSSBOG00000031757	CCNYL1 (ENSSBOG00000034567)
Capuchin	MODERN SPECIES	191											CPS1 (ENSCCAG00000027521) #18	ENSCCAG00000034724	LANCL1 (ENSCCAG00000028325) #19	MYL1 (ENSCCAG00000034680) #20	ENSCCAG00000036882	KANSL1L (ENSCCAG00000037601) #22	ENSCCAG00000033448 #23	UNC80 (ENSCCAG00000025606) #24	MAP2 (ENSCCAG00000038055) #26	PTH2R (ENSCCAG00000036728) #30	PIKFYVE (ENSCCAG00000026780) #31	ENSCCAG00000000173 #32	ENSCCAG00000035005	C2orf80 (ENSCCAG00000021479) #33	CRYGA (ENSCCAG00000028117)	ENSCCAG00000028787	CRYGC (ENSCCAG00000033759) #35	CRYGD (ENSCCAG00000034553) ##34	ENSCCAG00000037061 ##34	PLEKHM3 (ENSCCAG00000019609)	ENSCCAG00000030735
Mas night monkey	MODERN SPECIES	357	ENSANAG00000026766	FN1 (ENSANAG00000027282) #8	ENSANAG00000020375 #9	ABCA12 (ENSANAG00000035285) #11	BARD1 (ENSANAG00000026965) #12	ENSANAG00000034992	VWC2L (ENSANAG00000022669) #13	SPAG16 (ENSANAG00000021194) #14	IKZF2 (ENSANAG00000020083) #16	ERBB4 (ENSANAG00000034026) #17	CPS1 (ENSANAG00000036815) #18	ENSANAG00000036535	ENSANAG00000033281 #19	MYL1 (ENSANAG00000032098) #20	ACADL (ENSANAG00000034362) #21	KANSL1L (ENSANAG00000028662) #22	ENSANAG00000021491 #23	UNC80 (ENSANAG00000022890) #24	MAP2 (ENSANAG00000031569) #26	ENSANAG00000036032	PTH2R (ENSANAG00000026937) #30	PIKFYVE (ENSANAG00000034773) #31	ENSANAG00000029087 #32	ENSANAG00000033767	C2orf80 (ENSANAG00000021366) #33	CRYGA (ENSANAG00000020661)	CRYGB (ENSANAG00000001941) ##35	CRYGC (ENSANAG00000035987) #35	CRYGD (ENSANAG00000036850) ##34	ENSANAG00000009967 ##34	PLEKHM3 (ENSANAG00000028108)
Tarsier	MODERN SPECIES	2400																KANSL1L (ENSTSYG00000003309) #22	RPE (ENSTSYG00000003304) #23	UNC80 (ENSTSYG00000011416) #24
Strepsirrhini	ANCESTRAL SPECIES	10	ENSGT00940000156882	ENSGT00390000008926	ENSGT00940000155126 #8	ENSGT00390000004553 #9	ENSGT00940000157295.e #11	ENSGT00940000156532 #12	ENSGT00720000108792.B #13	ENSGT00940000155053 #14	ENSGT00940000157137 #16	ENSGT00390000002231.d.b	ENSGT00940000154695 #17	ENSGT00940000157192 #18	ENSGT00530000063186.b.b #19	ENSGT01030000234570.d.a #20	ENSGT00940000157652 #21	ENSGT00530000063688.a #22	ENSGT00390000001447 #23	ENSGT00640000091496 #24	ENSGT00940000156597.b #26	ENSGT00940000159094 #30	ENSGT00940000156307.b #31	ENSGT00390000012547.b #32	ENSGT00390000004840 #33	ENSGT00940000156190.h	ENSGT00940000156190.g	ENSGT00940000159232.h.b #35	ENSGT00940000158720.c.a ##34	ENSGT00940000158720.c.b ##34	ENSGT00940000159743	ENSGT00940000162639	ENSGT00940000154453.b.b
Lemuriformes	ANCESTRAL SPECIES	5	ENSGT00940000156882	ENSGT00390000008926	ENSGT00940000155126 #8	ENSGT00390000004553 #9	ENSGT00940000157295.e #11	ENSGT00940000156532 #12	ENSGT00720000108792.B #13	ENSGT00940000155053 #14	ENSGT00940000157137 #16	ENSGT00390000002231.d.b	ENSGT00940000154695 #17	ENSGT00940000157192 #18	ENSGT00530000063186.b.b #19	ENSGT01030000234570.d.a #20	ENSGT00940000157652 #21	ENSGT00530000063688.a #22	ENSGT00390000001447 #23	ENSGT00640000091496 #24	ENSGT00940000156597.b #26	ENSGT00940000159094 #30	ENSGT00940000156307.b #31	ENSGT00390000012547.b #32	ENSGT00390000004840 #33	ENSGT00940000156190.h	ENSGT00940000156190.g	ENSGT00940000159232.h.b #35	ENSGT00940000158720.c.a ##34	ENSGT00940000158720.c.b ##34	ENSGT00940000159743	ENSGT00940000162639	ENSGT00940000154453.b.b
Mouse lemur	MODERN SPECIES	30	FN1 (ENSMICG00000014594) #8	ENSMICG00000044310 #9	ABCA12 (ENSMICG00000014502) #11	BARD1 (ENSMICG00000014488) #12	VWC2L (ENSMICG00000034610) #13	SPAG16 (ENSMICG00000013876) #14	ENSMICG00000043031	ATIC (ENSMICG00000014573) #9	IKZF2 (ENSMICG00000013862) #16	ENSMICG00000037305	ERBB4 (ENSMICG00000036699) #17	CPS1 (ENSMICG00000010886) #18	LANCL1 (ENSMICG00000033807) #19	MYL1 (ENSMICG00000010008) #20	ACADL (ENSMICG00000009991) #21	KANSL1L (ENSMICG00000009963) #22	ENSMICG00000009953 #23	UNC80 (ENSMICG00000009921) #24	MAP2 (ENSMICG00000009887) #26	ENSMICG00000045866 ##34	PTH2R (ENSMICG00000029711) #30	PIKFYVE (ENSMICG00000009805) #31	IDH1 (ENSMICG00000031243) #32	C2orf80 (ENSMICG00000009794) #33	CRYGA (ENSMICG00000045154)	ENSMICG00000033287	CRYGC (ENSMICG00000037493) #35	CRYGD (ENSMICG00000043795) ##34	ENSMICG00000045926 ##34	PLEKHM3 (ENSMICG00000009771)	FZD5 (ENSMICG00000044967)
Lemuriformes_a	ANCESTRAL SPECIES	15	ENSGT00390000008926	ENSGT00940000155126 #8	ENSGT00390000004553 #9	ENSGT00940000157295.e #11	ENSGT00940000157295.f #11	ENSGT00940000156532 #12	ENSGT00720000108792.B #13	ENSGT00940000155053 #14	ENSGT00940000157137 #16	ENSGT00390000002231.d.b	ENSGT00940000154695 #17	ENSGT00940000157192 #18	ENSGT00530000063186.b.b #19	ENSGT01030000234570.d.a #20	ENSGT00940000157652 #21	ENSGT00530000063688.a #22	ENSGT00390000001447 #23	ENSGT00640000091496 #24	ENSGT00940000156597.b #26	ENSGT00940000159094 #30	ENSGT00940000156307.b #31	ENSGT00390000012547.b #32	ENSGT00390000004840 #33	ENSGT00940000156190.h	ENSGT00940000156190.g	ENSGT00940000159232.h.b #35	ENSGT00940000158720.c.a ##34	ENSGT00940000158720.c.b ##34	ENSGT00940000159743	ENSGT00940000162639	ENSGT00940000154453.b.b
Greater bamboo lemur	MODERN SPECIES	1131												CPS1 (ENSPSMG00000018594) #18	LANCL1 (ENSPSMG00000018635) #19	MYL1 (ENSPSMG00000018656) #20	ACADL (ENSPSMG00000018666) #21	KANSL1L (ENSPSMG00000018721) #22	ENSPSMG00000018796 #23	UNC80 (ENSPSMG00000018894) #24
Coquerels sifaka	MODERN SPECIES	847									ENSPCOG00000027398 #17	CPS1 (ENSPCOG00000021968) #18	ENSPCOG00000028314	LANCL1 (ENSPCOG00000008331) #19	MYL1 (ENSPCOG00000018716) #20	ENSPCOG00000026981	ACADL (ENSPCOG00000021470) #21	KANSL1L (ENSPCOG00000012542) #22	ENSPCOG00000017484 #23	UNC80 (ENSPCOG00000028748) #24	MAP2 (ENSPCOG00000020566) #26	PTH2R (ENSPCOG00000016298) #30	ENSPCOG00000014595	PIKFYVE (ENSPCOG00000021844) #31	IDH1 (ENSPCOG00000021282) #32	C2orf80 (ENSPCOG00000013784) #33	CRYGA (ENSPCOG00000028701)	ENSPCOG00000022043	CRYGC (ENSPCOG00000004093) #35	ENSPCOG00000017843 ##34	PLEKHM3 (ENSPCOG00000024736)	FZD5 (ENSPCOG00000011393)	ENSPCOG00000013286
Bushbaby	MODERN SPECIES	128	PECR (ENSOGAG00000004437)	MREG (ENSOGAG00000002252)	FN1 (ENSOGAG00000005042) #8	ATIC (ENSOGAG00000005039) #9	ABCA12 (ENSOGAG00000016828) #11	BARD1 (ENSOGAG00000009078) #12	VWC2L (ENSOGAG00000004042) #13	IKZF2 (ENSOGAG00000016680) #16	ENSOGAG00000010768 #17	ENSOGAG00000028178 #17	CPS1 (ENSOGAG00000005623) #18	LANCL1 (ENSOGAG00000005620) #19	MYL1 (ENSOGAG00000009848) #20	ENSOGAG00000027184	ACADL (ENSOGAG00000009844) #21	KANSL1L (ENSOGAG00000002780) #22	ENSOGAG00000002778 #23	UNC80 (ENSOGAG00000002771) #24	ENSOGAG00000025605 #26	ENSOGAG00000024989 ##34	PTH2R (ENSOGAG00000007106) #30	PIKFYVE (ENSOGAG00000014853) #31	IDH1 (ENSOGAG00000014848) #32	C2orf80 (ENSOGAG00000014847) #33	ENSOGAG00000014842	CRYGC (ENSOGAG00000014846) #35	CRYGD (ENSOGAG00000025720) ##34	ENSOGAG00000031316 ##34	ENSOGAG00000031869	PLEKHM3 (ENSOGAG00000003678)	FZD5 (ENSOGAG00000003677)
Laurasiatheria	ANCESTRAL SPECIES	12	ENSGT00940000156882	ENSGT00390000008926	ENSGT00940000155126 #8	ENSGT00390000004553 #9	ENSGT00940000157295 #11	ENSGT00940000156532 #12	ENSGT00720000108792.B #13	ENSGT00940000155053 #14	ENSGT00940000157137 #16	ENSGT00390000002231.d.b	ENSGT00940000154695 #17	ENSGT00940000157192 #18	ENSGT00530000063186.b.b #19	ENSGT01030000234570.d.a #20	ENSGT00940000157652 #21	ENSGT00530000063688.a #22	ENSGT00390000001447 #23	ENSGT01030000235330	ENSGT00640000091496 #24	ENSGT00940000156597.b #26	ENSGT00940000159094 #30	ENSGT00940000156307.b #31	ENSGT00940000177631	ENSGT00390000012547.b #32	ENSGT00390000004840 #33	ENSGT00940000156190.h	ENSGT00940000159232.h.a ##35	ENSGT00940000156190.g	ENSGT00940000159232.h.b #35	ENSGT00940000158720.c.a ##34	ENSGT00940000158720.c.b ##34
Laurasiatheria_a	ANCESTRAL SPECIES	16	ENSGT00940000156882	ENSGT00390000008926	ENSGT00940000155126 #8	ENSGT00390000004553 #9	ENSGT00940000157295 #11	ENSGT00940000156532 #12	ENSGT00720000108792.B #13	ENSGT00940000155053 #14	ENSGT00940000157137 #16	ENSGT00390000002231.d.b	ENSGT00940000154695 #17	ENSGT00940000157192 #18	ENSGT00530000063186.b.b #19	ENSGT01030000234570.d.a #20	ENSGT00940000157652 #21	ENSGT00530000063688.a #22	ENSGT00390000001447 #23	ENSGT01030000235330	ENSGT00640000091496 #24	ENSGT00940000156597.b #26	ENSGT00940000159094 #30	ENSGT00940000156307.b #31	ENSGT00940000177631	ENSGT00390000012547.b #32	ENSGT00390000004840 #33	ENSGT00940000156190.h	ENSGT00940000159232.h.a ##35	ENSGT00940000156190.g	ENSGT00940000159232.h.b #35	ENSGT00940000158720.c.a ##34	ENSGT00940000158720.c.b ##34
Laurasiatheria_b	ANCESTRAL SPECIES	16	ENSGT00390000015276	ENSGT00940000156882	ENSGT00390000008926	ENSGT00940000155126 #8	ENSGT00390000004553 #9	ENSGT00940000157295 #11	ENSGT00940000156532 #12	ENSGT00720000108792.B #13	ENSGT00940000155053 #14	ENSGT00940000157137 #16	ENSGT00940000154695 #17	ENSGT00940000157192 #18	ENSGT00530000063186.b.b #19	ENSGT01030000234570.d.a #20	ENSGT00940000157652 #21	ENSGT00530000063688.a #22	ENSGT00390000001447 #23	ENSGT00640000091496 #24	ENSGT00940000156597.b #26	ENSGT00940000159094 #30	ENSGT00940000156307.b #31	ENSGT00390000012547.b #32	ENSGT00390000004840 #33	ENSGT00940000156190.h	ENSGT00940000156190.g	ENSGT00940000159232.h.b #35	ENSGT00940000158720.c.a ##34	ENSGT00940000158720.c.b ##34	ENSGT00940000159743	ENSGT00940000162639	ENSGT00940000154453.b.b
Carnivora	ANCESTRAL SPECIES	17	ENSGT00390000015276	ENSGT00940000156882	ENSGT00390000008926	ENSGT00940000155126 #8	ENSGT00390000004553 #9	ENSGT00940000157295 #11	ENSGT00940000156532 #12	ENSGT00720000108792.B #13	ENSGT00940000155053 #14	ENSGT00940000157137 #16	ENSGT00940000154695 #17	ENSGT00940000157192 #18	ENSGT00530000063186.b.b #19	ENSGT01030000234570.d.a #20	ENSGT00940000157652 #21	ENSGT00530000063688.a #22	ENSGT00390000001447 #23	ENSGT00640000091496 #24	ENSGT00940000156597.b #26	ENSGT00940000159094 #30	ENSGT00940000156307.b #31	ENSGT00390000012547.b #32	ENSGT00390000004840 #33	ENSGT00940000156190.h	ENSGT00940000156190.g	ENSGT00940000159232.h.b #35	ENSGT00940000158720.c.a ##34	ENSGT00940000158720.c.b ##34	ENSGT00940000159743	ENSGT00940000162639	ENSGT00940000154453.b.b
Caniformia	ANCESTRAL SPECIES	14	ENSGT00390000015276	ENSGT00940000156882	ENSGT00390000008926	ENSGT00940000155126 #8	ENSGT00390000004553 #9	ENSGT00940000157295 #11	ENSGT00940000156532 #12	ENSGT00720000108792.B #13	ENSGT00940000155053 #14	ENSGT00940000157137 #16	ENSGT00940000154695 #17	ENSGT00940000157192 #18	ENSGT00530000063186.b.b #19	ENSGT01030000234570.d.a #20	ENSGT00940000157652 #21	ENSGT00530000063688.a #22	ENSGT00390000001447 #23	ENSGT00640000091496 #24	ENSGT00940000156597.b #26	ENSGT00940000159094 #30	ENSGT00940000156307.b #31	ENSGT00390000012547.b #32	ENSGT00390000004840 #33	ENSGT00940000156190.h	ENSGT00940000156190.g	ENSGT00940000159232.h.b #35	ENSGT00940000158720.c.a ##34	ENSGT00940000158720.c.b ##34	ENSGT00940000159743	ENSGT00940000162639	ENSGT00940000154453.b.b
Caniformia_b	ANCESTRAL SPECIES	13	ENSGT00390000015276	ENSGT00940000156882.l	ENSGT00390000008926	ENSGT00940000155126 #8	ENSGT00390000004553 #9	ENSGT00940000157295 #11	ENSGT00940000156532 #12	ENSGT00720000108792.B #13	ENSGT00940000155053 #14	ENSGT00940000157137 #16	ENSGT00940000154695 #17	ENSGT00940000157192 #18	ENSGT00530000063186.b.b #19	ENSGT01030000234570.d.a #20	ENSGT00940000157652 #21	ENSGT00530000063688.a #22	ENSGT00390000001447 #23	ENSGT00640000091496 #24	ENSGT00940000156597.b #26	ENSGT00940000159094 #30	ENSGT00940000156307.b #31	ENSGT00390000012547.b #32	ENSGT00390000004840 #33	ENSGT00940000156190.h	ENSGT00940000156190.g	ENSGT00940000159232.h.b #35	ENSGT00940000158720.c.a ##34	ENSGT00940000158720.c.b ##34	ENSGT00940000159743	ENSGT00940000162639	ENSGT00940000154453.b.b
Ursidae	ANCESTRAL SPECIES	7	ENSGT00390000015276	ENSGT00940000156882.l	ENSGT00390000008926	ENSGT00940000155126 #8	ENSGT00390000004553 #9	ENSGT00940000157295 #11	ENSGT00940000156532 #12	ENSGT00720000108792.B #13	ENSGT00940000155053 #14	ENSGT00940000157137 #16	ENSGT00940000154695 #17	ENSGT00940000157192 #18	ENSGT00530000063186.b.b #19	ENSGT01030000234570.d.a.c.b #20	ENSGT00940000157652 #21	ENSGT00530000063688.a #22	ENSGT00390000001447 #23	ENSGT00640000091496 #24	ENSGT00940000156597.b #26	ENSGT00940000158720.c.b.cb ##34	ENSGT00940000159094 #30	ENSGT00940000156307.b #31	ENSGT00390000012547.b #32	ENSGT00390000004840 #33	ENSGT00940000156190.h	ENSGT00940000156190.g	ENSGT00940000159232.h.b #35	ENSGT00940000158720.c.a ##34	ENSGT00940000158720.c.b.bb ##34	ENSGT00940000159743	ENSGT00940000162639
Ursus	ANCESTRAL SPECIES	4										ENSGT00940000155053 #14	ENSGT00940000157137 #16	ENSGT00940000157192 #18	ENSGT00530000063186.b.b #19	ENSGT01030000234570.d.a.c.b #20	ENSGT00940000157652 #21	ENSGT00530000063688.a #22	ENSGT00390000001447 #23	ENSGT00640000091496 #24	ENSGT00940000156597.b #26	ENSGT00940000158720.c.b.cb ##34	ENSGT00940000159094 #30	ENSGT00940000156307.b #31	ENSGT00390000012547.b #32	ENSGT00390000004840 #33	ENSGT00940000156190.h	ENSGT00940000156190.g	ENSGT00940000159232.h.b #35	ENSGT00940000158720.c.a ##34	ENSGT00940000158720.c.b.bb ##34	ENSGT00940000159743	ENSGT00940000162639
Polar bear	MODERN SPECIES	142								ENSUMAG00000023308 #14	ENSUMAG00000023307	ENSUMAG00000023301 #16	ENSUMAG00000023299 #16	CPS1 (ENSUMAG00000023263) #18	LANCL1 (ENSUMAG00000023250) #19	MYL1 (ENSUMAG00000023244) #20	ACADL (ENSUMAG00000023226) #21	KANSL1L (ENSUMAG00000023220) #22	ENSUMAG00000023217 #23	UNC80 (ENSUMAG00000023174) #24	MAP2 (ENSUMAG00000023131) #26	ENSUMAG00000023115 ##34	PTH2R (ENSUMAG00000023104) #30	PIKFYVE (ENSUMAG00000022735) #31	IDH1 (ENSUMAG00000022685) #32	C2orf80 (ENSUMAG00000022683) #33	CRYGA (ENSUMAG00000022681)	ENSUMAG00000022680	CRYGC (ENSUMAG00000022675) #35	CRYGD (ENSUMAG00000022673) ##34	ENSUMAG00000022672 ##34	PLEKHM3 (ENSUMAG00000022668)	ENSUMAG00000022665
American black bear	MODERN SPECIES	2501															ACADL (ENSUAMG00000008752) #21	KANSL1L (ENSUAMG00000008735) #22
Giant Panda	MODERN SPECIES	11	TMEM169 (ENSAMEG00000026744)	PECR (ENSAMEG00000003490)	MREG (ENSAMEG00000026110)	FN1 (ENSAMEG00000003517) #8	ATIC (ENSAMEG00000003629) #9	ABCA12 (ENSAMEG00000003679) #11	BARD1 (ENSAMEG00000003804) #12	VWC2L (ENSAMEG00000003842) #13	SPAG16 (ENSAMEG00000008081) #14	IKZF2 (ENSAMEG00000008058) #16	ERBB4 (ENSAMEG00000007301) #17	CPS1 (ENSAMEG00000005080) #18	LANCL1 (ENSAMEG00000005046) #19	MYL1 (ENSAMEG00000005031) #20	ACADL (ENSAMEG00000004978) #21	KANSL1L (ENSAMEG00000004973) #22	ENSAMEG00000004965 #23	UNC80 (ENSAMEG00000004864) #24	MAP2 (ENSAMEG00000014971) #26	ENSAMEG00000030710 ##34	PTH2R (ENSAMEG00000015327) #30	PIKFYVE (ENSAMEG00000015268) #31	IDH1 (ENSAMEG00000015244) #32	C2orf80 (ENSAMEG00000015239) #33	CRYGA (ENSAMEG00000028445)	ENSAMEG00000023505	CRYGC (ENSAMEG00000025725) #35	CRYGD (ENSAMEG00000031493) ##34	ENSAMEG00000023570 ##34	PLEKHM3 (ENSAMEG00000015216)	FZD5 (ENSAMEG00000015206)
Mustelinae	ANCESTRAL SPECIES	44			ENSGT00390000008926	ENSGT00940000155126 #8	ENSGT00390000004553 #9	ENSGT00940000157295 #11	ENSGT00940000156532 #12	ENSGT00720000108792.B #13	ENSGT00940000155053.lb #14	ENSGT00940000157137 #16	ENSGT00940000154695 #17	ENSGT00940000157192 #18	ENSGT00530000063186.b.b #19	ENSGT01030000234570.d.a #20	ENSGT00940000157652 #21	ENSGT00530000063688.a #22	ENSGT00390000001447 #23	ENSGT00640000091496 #24	ENSGT00940000156597.b #26	ENSGT00940000159094 #30	ENSGT00940000156307.b #31	ENSGT00390000012547.b #32	ENSGT00390000004840 #33	ENSGT00940000156190.h	ENSGT00940000159232.h.a ##35	ENSGT00940000159232.h.b #35	ENSGT00940000158720.c.a ##34	ENSGT00940000158720.c.b ##34	ENSGT00940000159743	ENSGT00940000162639	ENSGT00940000154453.b.b
American mink	MODERN SPECIES	107		ENSNVIG00000011301	FN1 (ENSNVIG00000010336) #8	PUR9 (ENSNVIG00000010219) #9	ABCA12 (ENSNVIG00000010058) #11	BARD1 (ENSNVIG00000009921) #12	VWC2L (ENSNVIG00000009906) #13	SPAG16 (ENSNVIG00000009863) #14	IKZF2 (ENSNVIG00000009778) #16	ERBB4 (ENSNVIG00000009625) #17	ENSNVIG00000009597	CPS1 (ENSNVIG00000009449) #18	LANCL1 (ENSNVIG00000009403) #19	MYL1 (ENSNVIG00000009358) #20	ACADL (ENSNVIG00000009328) #21	KANSL1L (ENSNVIG00000009283) #22	ENSNVIG00000009250 #23	UNC80 (ENSNVIG00000009127) #24
Ferret	MODERN SPECIES	289	FN1 (ENSMPUG00000007652) #8	ATIC (ENSMPUG00000007676) #9	ABCA12 (ENSMPUG00000007789) #11	BARD1 (ENSMPUG00000007816) #12	ENSMPUG00000019824	VWC2L (ENSMPUG00000007822) #13	ENSMPUG00000007826 #14	ENSMPUG00000007834 #14	IKZF2 (ENSMPUG00000007839) #16	ENSMPUG00000007887	ERBB4 (ENSMPUG00000007892) #17	CPS1 (ENSMPUG00000007909) #18	LANCL1 (ENSMPUG00000007928) #19	MYL1 (ENSMPUG00000007933) #20	ACADL (ENSMPUG00000007937) #21	KANSL1L (ENSMPUG00000007941) #22	ENSMPUG00000007948 #23	UNC80 (ENSMPUG00000008005) #24	MAP2 (ENSMPUG00000008039) #26	ENSMPUG00000008048 ##34
Canidae	ANCESTRAL SPECIES	20	ENSGT00390000015276.m	ENSGT00940000156882.i	ENSGT00390000008926	ENSGT00940000155126 #8	ENSGT00390000004553.u #9	ENSGT00940000157295 #11	ENSGT00940000156532 #12	ENSGT00720000108792.B #13	ENSGT00940000155053 #14	ENSGT00940000157137 #16	ENSGT00940000154695 #17	ENSGT00940000157192 #18	ENSGT00530000063186.b.b #19	ENSGT01030000234570.d.a #20	ENSGT00940000157652 #21	ENSGT00530000063688.a #22	ENSGT00390000001447 #23	ENSGT00640000091496 #24	ENSGT00940000156597.b #26	ENSGT00940000159094 #30	ENSGT00940000156307.b #31	ENSGT00390000012547.b #32	ENSGT00390000004840 #33	ENSGT00940000156190.h	ENSGT00940000156190.g	ENSGT00940000159232.h.b #35	ENSGT00940000158720.c.a ##34	ENSGT00940000158720.c.b ##34	ENSGT00940000159743	ENSGT00940000162639	ENSGT00940000154453.b.b
Canis_lupus	ANCESTRAL SPECIES	32	ENSGT00940000156882.i.a	ENSGT00390000008926	ENSGT00940000155126 #8	ENSGT00390000004553.u #9	ENSGT00940000157295 #11	ENSGT00940000156532.m #12	ENSGT00720000108792.B #13	ENSGT00940000155053 #14	ENSGT00940000157137 #16	ENSGT00940000154695 #17	ENSGT01030000235022.a.b	ENSGT00940000157192 #18	ENSGT00530000063186.b.b #19	ENSGT01030000234570.d.a #20	ENSGT00940000157652 #21	ENSGT00530000063688.a #22	ENSGT00390000001447 #23	ENSGT00640000091496 #24	ENSGT00940000156597.b #26	ENSGT00940000159094 #30	ENSGT00940000156307.b #31	ENSGT00390000012547.b #32	ENSGT00390000004840 #33	ENSGT00940000156190.h	ENSGT00940000156190.g	ENSGT00940000159232.h.b #35	ENSGT00940000158720.c.a ##34	ENSGT00940000158720.c.b.hb ##34	ENSGT00940000158720.c.b.ib ##34	ENSGT00940000159743	ENSGT00940000162639
Dingo	MODERN SPECIES	398	ENSCAFG00020027150	MREG (ENSCAFG00020027154)	FN1 (ENSCAFG00020027194) #8	ENSCAFG00020027231 #9	ABCA12 (ENSCAFG00020027288) #11	ENSCAFG00020027297 #12	VWC2L (ENSCAFG00020027301) #13	ENSCAFG00020027302 #14	IKZF2 (ENSCAFG00020027304) #16	ERBB4 (ENSCAFG00020027318) #17	ENSCAFG00020027327	CPS1 (ENSCAFG00020027329) #18	LANCL1 (ENSCAFG00020027334) #19	MYL1 (ENSCAFG00020027336) #20	ACADL (ENSCAFG00020027340) #21	KANSL1L (ENSCAFG00020027344) #22	ENSCAFG00020027348 #23	UNC80 (ENSCAFG00020027361) #24	MAP2 (ENSCAFG00020027372) #26	ENSCAFG00020027373 ##34	PTH2R (ENSCAFG00020027375) #30	PIKFYVE (ENSCAFG00020027378) #31	IDH1 (ENSCAFG00020027389) #32	C2orf80 (ENSCAFG00020027395) #33	CRYGA (ENSCAFG00020027398)	ENSCAFG00020027399	CRYGC (ENSCAFG00020027402) #35	CRYGD (ENSCAFG00020027405) ##34	ENSCAFG00020027409 ##34	PLEKHM3 (ENSCAFG00020027411)	FZD5 (ENSCAFG00020027413)
Dog	MODERN SPECIES	30	FN1 (ENSCAFG00845021985) #8	ATIC (ENSCAFG00845021597) #9	ABCA12 (ENSCAFG00845020774) #11	ENSCAFG00845020407 #12	VWC2L (ENSCAFG00845020176) #13	SPAG16 (ENSCAFG00845020068) #14	IKZF2 (ENSCAFG00845019777) #16	ERBB4 (ENSCAFG00845018700) #17	ENSCAFG00845018409	ENSCAFG00845018381	LANCL1 (ENSCAFG00845018274) #19	CPS1 (ENSCAFG00845017752) #18	MYL1 (ENSCAFG00845017241) #20	ENSCAFG00845017145	ACADL (ENSCAFG00845017093) #21	KANSL1L (ENSCAFG00845016965) #22	RPE (ENSCAFG00845016841) #23	ENSCAFG00845026723	UNC80 (ENSCAFG00845024595) #24	MAP2 (ENSCAFG00845024022) #26	ENSCAFG00845023938	ENSCAFG00845023908 ##34	PTH2R (ENSCAFG00845023795) #30	PIKFYVE (ENSCAFG00845023569) #31	IDH1 (ENSCAFG00845023478) #32	C37H2orf80 (ENSCAFG00845023251) #33	CRYGA (ENSCAFG00845023182)	CRYGB (ENSCAFG00845023028) #35	CRYGD (ENSCAFG00845022754) ##34	ENSCAFG00845022685 ##34	PLEKHM3 (ENSCAFG00845022580)
Red fox	MODERN SPECIES	39	ENSVVUG00000008967	FN1 (ENSVVUG00000008974) #8	ATIC (ENSVVUG00000008989) #9	ABCA12 (ENSVVUG00000009005) #11	BARD1 (ENSVVUG00000009080) #12	VWC2L (ENSVVUG00000009113) #13	ENSVVUG00000009126 #14	IKZF2 (ENSVVUG00000009142) #16	ERBB4 (ENSVVUG00000009194) #17	ENSVVUG00000009222	CPS1 (ENSVVUG00000009235) #18	LANCL1 (ENSVVUG00000009273) #19	ENSVVUG00000009278	MYL1 (ENSVVUG00000009295) #20	ACADL (ENSVVUG00000009345) #21	KANSL1L (ENSVVUG00000009477) #22	RPE (ENSVVUG00000009490) #23	UNC80 (ENSVVUG00000009630) #24	MAP2 (ENSVVUG00000009866) #26	PTH2R (ENSVVUG00000009949) #30	PIKFYVE (ENSVVUG00000010033) #31	IDH1 (ENSVVUG00000011802) #32	CUNH2orf80 (ENSVVUG00000011811) #33	CRYGA (ENSVVUG00000011815)	ENSVVUG00000011820	CRYGC (ENSVVUG00000011828) #35	CRYGD (ENSVVUG00000011838) ##34	PLEKHM3 (ENSVVUG00000011844)	FZD5 (ENSVVUG00000011856)	CCNYL1 (ENSVVUG00000011860)	ENSVVUG00000011880
Felidae	ANCESTRAL SPECIES	15	ENSGT00390000015276	ENSGT00940000156882	ENSGT00390000008926	ENSGT00940000155126 #8	ENSGT00390000004553.w #9	ENSGT00940000157295 #11	ENSGT00940000156532 #12	ENSGT00720000108792.B #13	ENSGT00940000155053 #14	ENSGT00940000157137 #16	ENSGT00940000154695 #17	ENSGT00940000157192 #18	ENSGT00530000063186.b.b #19	ENSGT01030000234570.d.a #20	ENSGT00940000157652 #21	ENSGT00530000063688.a #22	ENSGT00390000001447 #23	ENSGT00640000091496 #24	ENSGT00940000156597.b #26	ENSGT00940000158720.c.b.`b ##34	ENSGT00940000159094 #30	ENSGT00940000156307.b #31	ENSGT00390000012547.b #32	ENSGT00390000004840 #33	ENSGT00940000156190.h	ENSGT00940000159232.h.a ##35	ENSGT00940000159232.h.b #35	ENSGT00940000158720.c.a ##34	ENSGT00940000158720.c.b.ab ##34	ENSGT00940000159743	ENSGT00940000162639
Panthera	ANCESTRAL SPECIES	9	ENSGT00390000015276	ENSGT00940000156882	ENSGT00390000008926	ENSGT00940000155126 #8	ENSGT00390000004553.w #9	ENSGT00940000157295 #11	ENSGT00940000156532 #12	ENSGT00720000108792.B #13	ENSGT00940000155053 #14	ENSGT00940000157137 #16	ENSGT00940000154695 #17	ENSGT00940000157192 #18	ENSGT00530000063186.b.b #19	ENSGT01030000234570.d.a #20	ENSGT00940000157652 #21	ENSGT00530000063688.a #22	ENSGT00390000001447 #23	ENSGT00640000091496 #24	ENSGT00940000156597.b #26	ENSGT00940000158720.c.b.`b ##34	ENSGT00940000159094 #30	ENSGT00940000156307.b #31	ENSGT00390000012547.b #32	ENSGT00390000004840 #33	ENSGT00940000156190.h	ENSGT00940000159232.h.a ##35	ENSGT00940000159232.h.b #35	ENSGT00940000158720.c.a ##34	ENSGT00940000158720.c.b.ab ##34	ENSGT00940000159743	ENSGT00940000162639
Panthera_a	ANCESTRAL SPECIES	6	ENSGT00390000015276	ENSGT00940000156882	ENSGT00390000008926	ENSGT00940000155126 #8	ENSGT00390000004553.w #9	ENSGT00940000157295 #11	ENSGT00940000156532 #12	ENSGT00720000108792.B #13	ENSGT00940000155053 #14	ENSGT00940000157137 #16	ENSGT00940000154695 #17	ENSGT00940000157192 #18	ENSGT00530000063186.b.b #19	ENSGT01030000234570.d.a #20	ENSGT00940000157652 #21	ENSGT00530000063688.a #22	ENSGT00390000001447 #23	ENSGT00640000091496 #24	ENSGT00940000156597.b #26	ENSGT00940000159094 #30	ENSGT00940000156307.b #31	ENSGT00390000012547.b #32	ENSGT00390000004840 #33	ENSGT00940000156190.h	ENSGT00940000159232.h.a ##35	ENSGT00940000159232.h.b #35	ENSGT00940000158720.c.a ##34	ENSGT00940000158720.c.b.`b ##34	ENSGT00940000158720.c.b.ab ##34	ENSGT00940000159743	ENSGT00940000162639
lion	MODERN SPECIES	8	PECR (ENSPLOG00000022096)	MREG (ENSPLOG00000022108)	FN1 (ENSPLOG00000022449) #8	ATIC (ENSPLOG00000022715) #9	ABCA12 (ENSPLOG00000022719) #11	BARD1 (ENSPLOG00000022720) #12	ENSPLOG00000022721	VWC2L (ENSPLOG00000022722) #13	SPAG16 (ENSPLOG00000022723) #14	IKZF2 (ENSPLOG00000022726) #16	ERBB4 (ENSPLOG00000022728) #17	CPS1 (ENSPLOG00000022730) #18	LANCL1 (ENSPLOG00000022731) #19	MYL1 (ENSPLOG00000022732) #20	ACADL (ENSPLOG00000005365) #21	KANSL1L (ENSPLOG00000005446) #22	ENSPLOG00000005504 #23	UNC80 (ENSPLOG00000005686) #24	MAP2 (ENSPLOG00000006126) #26	ENSPLOG00000006284 ##34	ENSPLOG00000006368 ##34	PTH2R (ENSPLOG00000006401) #30	PIKFYVE (ENSPLOG00000006516) #31	IDH1 (ENSPLOG00000006638) #32	C2orf80 (ENSPLOG00000006690) #33	CRYGA (ENSPLOG00000006776)	CRYGB (ENSPLOG00000006808) ##35	CRYGC (ENSPLOG00000006841) #35	ENSPLOG00000006864 ##34	ENSPLOG00000006884 ##34	PLEKHM3 (ENSPLOG00000006915)
leopard	MODERN SPECIES	12	ENSPPRG00000010418	ENSPPRG00000010384	MREG (ENSPPRG00000010221)	FN1 (ENSPPRG00000009716) #8	ENSPPRG00000002551 #9	ABCA12 (ENSPPRG00000002284) #11	BARD1 (ENSPPRG00000000936) #12	VWC2L (ENSPPRG00000000428) #13	SPAG16 (ENSPPRG00000000338) #14	IKZF2 (ENSPPRG00000022962) #16	ERBB4 (ENSPPRG00000021619) #17	CPS1 (ENSPPRG00000017782) #18	LANCL1 (ENSPPRG00000014545) #19	MYL1 (ENSPPRG00000014175) #20	ACADL (ENSPPRG00000014114) #21	KANSL1L (ENSPPRG00000013126) #22	ENSPPRG00000012984 #23	UNC80 (ENSPPRG00000012259) #24	MAP2 (ENSPPRG00000010961) #26	ENSPPRG00000009415 ##34	PTH2R (ENSPPRG00000009093) #30	PIKFYVE (ENSPPRG00000008871) #31	IDH1 (ENSPPRG00000008143) #32	C2orf80 (ENSPPRG00000007937) #33	CRYGA (ENSPPRG00000007869)	ENSPPRG00000007792	CRYGC (ENSPPRG00000007729) #35	CRYGD (ENSPPRG00000007631) ##34	ENSPPRG00000007573 ##34	PLEKHM3 (ENSPPRG00000007268)	ENSPPRG00000007043
Tiger	MODERN SPECIES	240	TMEM169 (ENSPTIG00000015999)	PECR (ENSPTIG00000015470)	MREG (ENSPTIG00000014793)	FN1 (ENSPTIG00000019902) #8	ATIC (ENSPTIG00000015356) #9	ABCA12 (ENSPTIG00000006592) #11	BARD1 (ENSPTIG00000002607) #12	VWC2L (ENSPTIG00000022118) #13	SPAG16 (ENSPTIG00000022030) #14	IKZF2 (ENSPTIG00000021209) #16	ERBB4 (ENSPTIG00000007031) #17	CPS1 (ENSPTIG00000013483) #18	LANCL1 (ENSPTIG00000012768) #19	MYL1 (ENSPTIG00000012214) #20	ACADL (ENSPTIG00000009876) #21	KANSL1L (ENSPTIG00000004021) #22	ENSPTIG00000020548 #23	UNC80 (ENSPTIG00000017745) #24	MAP2 (ENSPTIG00000011771) #26	PTH2R (ENSPTIG00000010836) #30
Cat	MODERN SPECIES	239	FN1 (ENSFCAG00000009217) #8	ATIC (ENSFCAG00000009216) #9	ABCA12 (ENSFCAG00000009215) #11	BARD1 (ENSFCAG00000010312) #12	VWC2L (ENSFCAG00000015156) #13	ENSFCAG00000034149	ENSFCAG00000032010	SPAG16 (ENSFCAG00000015155) #14	ENSFCAG00000048148	IKZF2 (ENSFCAG00000036602) #16	ERBB4 (ENSFCAG00000027902) #17	CPS1 (ENSFCAG00000027460) #18	LANCL1 (ENSFCAG00000023129) #19	MYL1 (ENSFCAG00000036039) #20	ACADL (ENSFCAG00000024046) #21	KANSL1L (ENSFCAG00000027585) #22	ENSFCAG00000009135 #23	UNC80 (ENSFCAG00000031298) #24	MAP2 (ENSFCAG00000024249) #26	ENSFCAG00000041864 ##34	PTH2R (ENSFCAG00000003978) #30	PIKFYVE (ENSFCAG00000003977) #31	IDH1 (ENSFCAG00000003976) #32	CC1H2orf80 (ENSFCAG00000003974) #33	CRYGA (ENSFCAG00000003973)	CRYGB (ENSFCAG00000003972) ##35	CRYGC (ENSFCAG00000040128) #35	CRYGD (ENSFCAG00000042141) ##34	ENSFCAG00000046445 ##34	PLEKHM3 (ENSFCAG00000002716)	FZD5 (ENSFCAG00000037566)
Laurasiatheria_c	ANCESTRAL SPECIES	18	ENSGT00390000015276	ENSGT00940000156882	ENSGT00390000008926	ENSGT00940000155126 #8	ENSGT00390000004553 #9	ENSGT00940000157295 #11	ENSGT00940000156532 #12	ENSGT00720000108792.B #13	ENSGT00940000155053 #14	ENSGT00940000157137 #16	ENSGT00940000154695 #17	ENSGT00940000157192 #18	ENSGT00530000063186.b.b #19	ENSGT01030000234570.d.a #20	ENSGT00940000157652.f #21	ENSGT00530000063688.a #22	ENSGT00390000001447 #23	ENSGT00640000091496 #24	ENSGT00940000156597.b #26	ENSGT00940000159094 #30	ENSGT00940000156307.b #31	ENSGT00390000012547.b #32	ENSGT00390000004840 #33	ENSGT00940000156190.h	ENSGT00940000159232.h.a ##35	ENSGT00940000156190.g	ENSGT00940000159232.h.b #35	ENSGT00940000158720.c.a ##34	ENSGT00940000158720.c.b ##34	ENSGT00940000159743	ENSGT00940000162639
Equus	ANCESTRAL SPECIES	51	ENSGT00390000015276	ENSGT00940000156882	ENSGT00390000008926	ENSGT00940000155126 #8	ENSGT00390000004553 #9	ENSGT00940000157295 #11	ENSGT00940000156532 #12	ENSGT00720000108792.B #13	ENSGT00940000155053 #14	ENSGT00940000157137 #16	ENSGT00940000154695 #17	ENSGT00940000157192 #18	ENSGT00530000063186.b.b #19	ENSGT01030000234570.d.a #20	ENSGT00940000157652.e #21	ENSGT00530000063688.a #22	ENSGT00390000001447 #23	ENSGT00640000091496 #24	ENSGT00940000156597.b #26
Horse	MODERN SPECIES	27	ATIC (ENSECAG00000014653) #9	ABCA12 (ENSECAG00000009468) #11	BARD1 (ENSECAG00000002113) #12	VWC2L (ENSECAG00000001965) #13	ENSECAG00000056274	SPAG16 (ENSECAG00000000274) #14	IKZF2 (ENSECAG00000032639) #16	ENSECAG00000039974	ERBB4 (ENSECAG00000022865) #17	CPS1 (ENSECAG00000028289) #18	ENSECAG00000049241	LANCL1 (ENSECAG00000009197) #19	MYL1 (ENSECAG00000005145) #20	ENSECAG00000044963 #21	ENSECAG00000057220	KANSL1L (ENSECAG00000000018) #22	ENSECAG00000030135 #23	UNC80 (ENSECAG00000024348) #24
Donkey	MODERN SPECIES	5	GTF3C1 (ENSEASG00005017333)	IL21R (ENSEASG00005017341)	IL4R (ENSEASG00005017345)	NSMCE1 (ENSEASG00005017351)	KDM8 (ENSEASG00005017358)	ENSEASG00005025359	ENSEASG00005028243	ENSEASG00005030950	ZKSCAN2 (ENSEASG00005009546)	AQP8 (ENSEASG00005009547)	ENSEASG00005025800	ENSEASG00005034320	ENSEASG00005013395 #18	LANCL1 (ENSEASG00005013420) #19	MYL1 (ENSEASG00005027966) #20	KANSL1L (ENSEASG00005013432) #22	ENSEASG00005013438 #23	UNC80 (ENSEASG00005013454) #24	ENSEASG00005013504 #26	ENSEASG00005033307	ENSEASG00005031638	ENSEASG00005026882	ENSEASG00005034065	ENSEASG00005037698	ENSEASG00005026066	ENSEASG00005029119	ENSEASG00005032629	ENSEASG00005037638	ENSEASG00005029643	ENSEASG00005036213	ENSEASG00005033613
Chiroptera	ANCESTRAL SPECIES	11	ENSGT00390000015276	ENSGT00940000156882	ENSGT00390000008926	ENSGT00940000155126 #8	ENSGT00390000004553 #9	ENSGT00940000157295 #11	ENSGT00940000156532 #12	ENSGT00720000108792.B #13	ENSGT00940000155053 #14	ENSGT00940000157137 #16	ENSGT00940000154695 #17	ENSGT00940000157192 #18	ENSGT00530000063186.b.b #19	ENSGT01030000234570.d.a #20	ENSGT00940000157652.f #21	ENSGT00530000063688.a #22	ENSGT00390000001447 #23	ENSGT00640000091496 #24	ENSGT00940000156597.b #26	ENSGT00940000159094 #30	ENSGT00940000156307.b #31	ENSGT00390000012547.b #32	ENSGT00390000004840 #33	ENSGT00940000156190.h	ENSGT00940000159232.h.a ##35	ENSGT00940000159232.h.b #35	ENSGT00940000158720.c.a ##34	ENSGT00940000158720.c.b ##34	ENSGT00940000159743	ENSGT00940000162639	ENSGT00940000154453.b.a.b
Megabat	MODERN SPECIES	3104																KANSL1L (ENSPVAG00000014453) #22	ENSPVAG00000014452 #23
Microchiroptera	ANCESTRAL SPECIES	15	ENSGT00390000015276	ENSGT00940000156882	ENSGT00390000008926	ENSGT00940000155126 #8	ENSGT00390000004553 #9	ENSGT00940000157295 #11	ENSGT00940000156532 #12	ENSGT00720000108792.B #13	ENSGT00940000155053 #14	ENSGT00940000157137 #16	ENSGT00940000154695 #17	ENSGT00940000157192 #18	ENSGT00530000063186.b.b #19	ENSGT01030000234570.d.a #20	ENSGT00940000157652.f #21	ENSGT00530000063688.a #22	ENSGT00390000001447 #23	ENSGT00640000091496 #24	ENSGT00940000156597.b #26	ENSGT00940000159094 #30	ENSGT00940000156307.b #31	ENSGT00390000012547.b #32	ENSGT00390000004840 #33	ENSGT00940000159232.h.a ##35	ENSGT00940000159232.h.b #35	ENSGT00940000158720.c.b ##34	ENSGT00940000159743	ENSGT00940000162639	ENSGT00940000154453.b.a.b	ENSGT00940000154453.b.a.a	ENSGT00940000157249
Microbat	MODERN SPECIES	940	ATIC (ENSMLUG00000001830) #9	ABCA12 (ENSMLUG00000014147) #11	BARD1 (ENSMLUG00000014140) #12	VWC2L (ENSMLUG00000004050) #13	ENSMLUG00000004039 #14	ENSMLUG00000024505 #16	IKZF2 (ENSMLUG00000012494) #16	ENSMLUG00000023988 #17	ENSMLUG00000022171 #17	ENSMLUG00000016092 #17	CPS1 (ENSMLUG00000015090) #18	LANCL1 (ENSMLUG00000002650) #19	MYL1 (ENSMLUG00000002641) #20	ENSMLUG00000017730	ACADL (ENSMLUG00000014508) #21	KANSL1L (ENSMLUG00000014487) #22	ENSMLUG00000014477 #23	UNC80 (ENSMLUG00000014442) #24	MAP2 (ENSMLUG00000014420) #26	PTH2R (ENSMLUG00000008536) #30	PIKFYVE (ENSMLUG00000000897) #31	ENSMLUG00000000891 #32	C2orf80 (ENSMLUG00000025398) #33	CRYGC (ENSMLUG00000015767) #35	ENSMLUG00000028817 ##34	PLEKHM3 (ENSMLUG00000011905)	ENSMLUG00000016122	METTL21A (ENSMLUG00000015747)	CREB1 (ENSMLUG00000016119)	KLF7 (ENSMLUG00000009436)	CPO (ENSMLUG00000009428)
Greater horseshoe bat	MODERN SPECIES	26	ATIC (ENSRFEG00010014882) #9	ABCA12 (ENSRFEG00010014979) #11	BARD1 (ENSRFEG00010016379) #12	VWC2L (ENSRFEG00010017204) #13	SPAG16 (ENSRFEG00010017261) #14	ENSRFEG00010017326	IKZF2 (ENSRFEG00010017362) #16	ENSRFEG00010017533	ENSRFEG00010017581	ERBB4 (ENSRFEG00010017623) #17	ENSRFEG00010018450	CPS1 (ENSRFEG00010018496) #18	LANCL1 (ENSRFEG00010018871) #19	MYL1 (ENSRFEG00010018919) #20	ACADL (ENSRFEG00010019011) #21	KANSL1L (ENSRFEG00010019059) #22	ENSRFEG00010019086 #23	UNC80 (ENSRFEG00010019184) #24	ENSRFEG00010019323	MAP2 (ENSRFEG00010019384) #26	PTH2R (ENSRFEG00010019527) #30	PIKFYVE (ENSRFEG00010019609) #31	IDH1 (ENSRFEG00010019714) #32	C2orf80 (ENSRFEG00010019768) #33	CRYGB (ENSRFEG00010019933) ##35	CRYGC (ENSRFEG00010019976) #35	PLEKHM3 (ENSRFEG00010020009)	FZD5 (ENSRFEG00010020064)	CCNYL1 (ENSRFEG00010020079)	METTL21A (ENSRFEG00010020119)	ENSRFEG00010020167
Artiodactyla	ANCESTRAL SPECIES	13	ENSGT00940000156882	ENSGT00390000008926	ENSGT00940000155126 #8	ENSGT00390000004553 #9	ENSGT00940000157295 #11	ENSGT00940000156532 #12	ENSGT00720000108792.B #13	ENSGT00940000155053 #14	ENSGT00940000157137 #16	ENSGT00390000002231.d.b	ENSGT00940000154695 #17	ENSGT00940000157192 #18	ENSGT00530000063186.b.b #19	ENSGT01030000234570.d.a #20	ENSGT00940000157652 #21	ENSGT00530000063688.a #22	ENSGT00390000001447 #23	ENSGT01030000235330	ENSGT00640000091496 #24	ENSGT00940000156597.b #26	ENSGT00940000159094 #30	ENSGT00940000156307.b #31	ENSGT00940000177631	ENSGT00390000012547.b #32	ENSGT00390000004840 #33	ENSGT00940000156190.h	ENSGT00940000159232.h.a ##35	ENSGT00940000156190.g	ENSGT00940000159232.h.b #35	ENSGT00940000158720.c.a ##34	ENSGT00940000158720.c.b ##34
Suina	ANCESTRAL SPECIES	3	ENSGT00940000156882	ENSGT00390000008926	ENSGT00940000155126 #8	ENSGT00390000004553 #9	ENSGT00940000157295 #11	ENSGT00940000156532 #12	ENSGT00720000108792.B #13	ENSGT00940000155053 #14	ENSGT00940000157137 #16	ENSGT00390000002231.d.b	ENSGT00940000154695 #17	ENSGT00940000157192 #18	ENSGT00530000063186.b.b #19	ENSGT01030000234570.d.a #20	ENSGT00940000157652 #21	ENSGT00530000063688.a #22	ENSGT00390000001447 #23	ENSGT00640000091496 #24	ENSGT00940000156597.b #26	ENSGT00940000158720.c.b ##34	ENSGT00940000159094 #30	ENSGT00940000156307.b #31	ENSGT00390000012547.b #32	ENSGT00390000004840 #33	ENSGT00940000156190.h	ENSGT00940000159232.h.a ##35	ENSGT00940000159232.h.b #35	ENSGT00940000158720.c.a ##34	ENSGT00940000159743	ENSGT00940000162639	ENSGT00940000154453.b.b
Pig	MODERN SPECIES	6	ATIC (ENSSSCG00000016173) #9	ABCA12 (ENSSSCG00000034282) #11	BARD1 (ENSSSCG00000016170) #12	ENSSSCG00000048197	VWC2L (ENSSSCG00000016168) #13	ENSSSCG00000049911	SPAG16 (ENSSSCG00000016166) #14	IKZF2 (ENSSSCG00000016164) #16	ENSSSCG00000037703	ERBB4 (ENSSSCG00000016160) #17	CPS1 (ENSSSCG00000016159) #18	LANCL1 (ENSSSCG00000016158) #19	MYL1 (ENSSSCG00000016157) #20	ACADL (ENSSSCG00000016156) #21	ENSSSCG00000060126	KANSL1L (ENSSSCG00000022830) #22	ENSSSCG00000032311 #23	UNC80 (ENSSSCG00000016153) #24	MAP2 (ENSSSCG00000016151) #26	ENSSSCG00000038814 ##34	ENSSSCG00000032020	PTH2R (ENSSSCG00000016148) #30	PIKFYVE (ENSSSCG00000016147) #31	IDH1 (ENSSSCG00000023264) #32	C2orf80 (ENSSSCG00000032040) #33	ENSSSCG00000039241	CRYGC (ENSSSCG00000039620) #35	CRYGD (ENSSSCG00000034967) ##34	ENSSSCG00000036186 ##34	PLEKHM3 (ENSSSCG00000016141)	FZD5 (ENSSSCG00000016140)
Chacoan peccary	MODERN SPECIES	940	ATIC (ENSCWAG00000007355) #9	ABCA12 (ENSCWAG00000007483) #11	BARD1 (ENSCWAG00000008027) #12	VWC2L (ENSCWAG00000010304) #13	SPAG16 (ENSCWAG00000010324) #14	IKZF2 (ENSCWAG00000010504) #16	ENSCWAG00000010926	ERBB4 (ENSCWAG00000010989) #17	ENSCWAG00000011700	ENSCWAG00000011727	ENSCWAG00000011755	CPS1 (ENSCWAG00000011796) #18	LANCL1 (ENSCWAG00000012920) #19	MYL1 (ENSCWAG00000012965) #20	ACADL (ENSCWAG00000013051) #21	KANSL1L (ENSCWAG00000013105) #22	ENSCWAG00000013228 #23	UNC80 (ENSCWAG00000013389) #24	ENSCWAG00000014500 #26	ENSCWAG00000014678 ##34	PTH2R (ENSCWAG00000014718) #30	PIKFYVE (ENSCWAG00000014910) #31	IDH1 (ENSCWAG00000015021) #32	C2orf80 (ENSCWAG00000015065) #33	CRYGA (ENSCWAG00000015197)	CRYGB (ENSCWAG00000015245) ##35	CRYGC (ENSCWAG00000015274) #35	CRYGD (ENSCWAG00000015313) ##34	PLEKHM3 (ENSCWAG00000015435)	FZD5 (ENSCWAG00000015512)
Artiodactyla_a	ANCESTRAL SPECIES	13	ENSGT00940000156882	ENSGT00390000008926	ENSGT00940000155126 #8	ENSGT00390000004553 #9	ENSGT00940000157295 #11	ENSGT00940000156532 #12	ENSGT00720000108792.B #13	ENSGT00940000155053 #14	ENSGT00940000157137 #16	ENSGT00390000002231.d.b	ENSGT00940000154695 #17	ENSGT00940000157192 #18	ENSGT00530000063186.b.b #19	ENSGT01030000234570.d.a #20	ENSGT00940000157652 #21	ENSGT00530000063688.a #22	ENSGT00390000001447 #23	ENSGT01030000235330	ENSGT00640000091496 #24	ENSGT00940000156597.b #26	ENSGT00940000159094 #30	ENSGT00940000156307.b #31	ENSGT00940000177631	ENSGT00390000012547.b #32	ENSGT00390000004840 #33	ENSGT00940000156190.h	ENSGT00940000159232.h.a ##35	ENSGT00940000156190.g	ENSGT00940000159232.h.b #35	ENSGT00940000158720.c.a ##34	ENSGT00940000158720.c.b ##34
Camelidae	ANCESTRAL SPECIES	58			ENSGT00940000155126 #8	ENSGT00390000004553 #9	ENSGT00940000157295 #11	ENSGT00940000156532 #12	ENSGT00720000108792.B #13	ENSGT00940000155053 #14	ENSGT00940000157137 #16	ENSGT00390000002231.d.b	ENSGT00940000154695 #17	ENSGT00940000157192 #18	ENSGT00530000063186.b.b #19	ENSGT01030000234570.d.a #20	ENSGT00940000157652 #21	ENSGT00530000063688.a #22	ENSGT00390000001447 #23	ENSGT00640000091496 #24	ENSGT00940000156597.b #26	ENSGT00940000159094 #30	ENSGT00940000156307.b #31	ENSGT00390000012547.b #32	ENSGT00390000004840 #33	ENSGT00940000156190.h	ENSGT00940000159232.h.a ##35	ENSGT00940000156190.g	ENSGT00940000159232.h.b #35	ENSGT00940000158720.c.a ##34	ENSGT00940000158720.c.b ##34	ENSGT00940000159743	ENSGT00940000162639
Arabian camel	MODERN SPECIES	31	MFSD6 (ENSCDRG00005007954)	FN1 (ENSCDRG00005008111) #8	ATIC (ENSCDRG00005009297) #9	ABCA12 (ENSCDRG00005009551) #11	BARD1 (ENSCDRG00005010435) #12	VWC2L (ENSCDRG00005010599) #13	SPAG16 (ENSCDRG00005010669) #14	IKZF2 (ENSCDRG00005010931) #16	ENSCDRG00005011221	ERBB4 (ENSCDRG00005011281) #17	ENSCDRG00005011902	CPS1 (ENSCDRG00005011935) #18	LANCL1 (ENSCDRG00005012357) #19	MYL1 (ENSCDRG00005012450) #20	ACADL (ENSCDRG00005012612) #21	KANSL1L (ENSCDRG00005012697) #22	ENSCDRG00005012826 #23	UNC80 (ENSCDRG00005012995) #24	MAP2 (ENSCDRG00005014163) #26	ENSCDRG00005014776 ##34	PTH2R (ENSCDRG00005014818) #30	PIKFYVE (ENSCDRG00005014910) #31	IDH1 (ENSCDRG00005015742) #32	C2orf80 (ENSCDRG00005015804) #33	CRYGA (ENSCDRG00005015861)	CRYGB (ENSCDRG00005015889) ##35	CRYGC (ENSCDRG00005015923) #35	CRYGD (ENSCDRG00005015948) ##34	ENSCDRG00005015995 ##34	PLEKHM3 (ENSCDRG00005016026)	FZD5 (ENSCDRG00005016088)
Alpaca	MODERN SPECIES	1821															ACADL (ENSVPAG00000011587) #21	KANSL1L (ENSVPAG00000011586) #22	ENSVPAG00000011585 #23	ENSVPAG00000011584 #24	ENSVPAG00000011583 #24	MAP2 (ENSVPAG00000011582) #26
Artiodactyla_b	ANCESTRAL SPECIES	12	ENSGT00940000156882	ENSGT00390000008926	ENSGT00940000155126 #8	ENSGT00390000004553 #9	ENSGT00940000157295 #11	ENSGT00940000156532 #12	ENSGT00720000108792.B #13	ENSGT00940000155053 #14	ENSGT00940000157137 #16	ENSGT00390000002231.d.b	ENSGT00940000154695 #17	ENSGT00940000157192 #18	ENSGT00530000063186.b.b #19	ENSGT01030000234570.d.a #20	ENSGT00940000157652 #21	ENSGT00530000063688.a #22	ENSGT00390000001447 #23	ENSGT01030000235330.d	ENSGT00640000091496 #24	ENSGT00940000156597.b #26	ENSGT00940000159094 #30	ENSGT00940000156307.b #31	ENSGT00940000177631	ENSGT00390000012547.b #32	ENSGT00390000004840 #33	ENSGT00940000156190.h	ENSGT00940000159232.h.a ##35	ENSGT00940000156190.g	ENSGT00940000159232.h.b #35	ENSGT00940000158720.c.a ##34	ENSGT00940000158720.c.b ##34
Cetacea	ANCESTRAL SPECIES	14	ENSGT00390000008926	ENSGT00940000155126 #8	ENSGT00390000004553 #9	ENSGT00940000157295 #11	ENSGT00940000156532 #12	ENSGT00720000108792.B #13	ENSGT00940000155053 #14	ENSGT00940000157137 #16	ENSGT00390000002231.d.b	ENSGT00940000154695 #17	ENSGT00530000065303.j	ENSGT00940000157192 #18	ENSGT00530000063186.b.b #19	ENSGT01030000234570.d.a #20	ENSGT00940000157652 #21	ENSGT00530000063688.a #22	ENSGT00390000001447 #23	ENSGT01030000235330.d	ENSGT00640000091496 #24	ENSGT00940000156597.b #26	ENSGT00940000158720.c.b ##34	ENSGT00940000159094 #30	ENSGT00940000156307.b #31	ENSGT00390000012547.b #32	ENSGT00390000004840 #33	ENSGT00940000156190.h	ENSGT00940000159232.h.a ##35	ENSGT00940000156190.g	ENSGT00940000159232.h.b #35	ENSGT00940000158720.c.a ##34	ENSGT00390000006670.d
Odontoceti	ANCESTRAL SPECIES	13	ENSGT00390000008926	ENSGT00940000155126 #8	ENSGT00390000004553 #9	ENSGT00940000157295 #11	ENSGT00940000156532 #12	ENSGT00720000108792.B #13	ENSGT00940000155053 #14	ENSGT00940000157137 #16	ENSGT00390000002231.d.b	ENSGT00940000154695 #17	ENSGT00530000065303.j	ENSGT00940000157192 #18	ENSGT00530000063186.b.b #19	ENSGT01030000234570.d.a #20	ENSGT00940000157652 #21	ENSGT00530000063688.a #22	ENSGT00390000001447 #23	ENSGT01030000235330.d	ENSGT00640000091496 #24	ENSGT00940000156597.b #26	ENSGT00940000159094 #30	ENSGT00940000156307.b #31	ENSGT00390000012547.b #32	ENSGT00390000004840 #33	ENSGT00940000156190.h	ENSGT00940000156190.g	ENSGT00940000159232.h.b #35	ENSGT00940000158720.c.a ##34	ENSGT00940000158720.c.b ##34	ENSGT00940000159743	ENSGT00940000162639
Odontoceti_a	ANCESTRAL SPECIES	10	ENSGT00390000008926	ENSGT00940000155126 #8	ENSGT00390000004553 #9	ENSGT00940000157295 #11	ENSGT00940000156532 #12	ENSGT00720000108792.B #13	ENSGT00940000155053 #14	ENSGT00940000157137 #16	ENSGT00390000002231.d.b	ENSGT00940000154695 #17	ENSGT00530000065303.j	ENSGT00940000157192 #18	ENSGT00530000063186.b.b #19	ENSGT01030000234570.d.a #20	ENSGT00940000157652 #21	ENSGT00530000063688.a #22	ENSGT00390000001447 #23	ENSGT01030000235330.d	ENSGT00640000091496 #24	ENSGT00940000156597.b #26	ENSGT00940000158720.c.b ##34	ENSGT00940000159094 #30	ENSGT00940000156307.b #31	ENSGT00390000012547.b #32	ENSGT00390000004840 #33	ENSGT00940000156190.h	ENSGT00940000156190.g	ENSGT00940000159232.h.b #35	ENSGT00940000158720.c.a ##34	ENSGT00390000006670.d	ENSGT00940000159743
Odontoceti_b	ANCESTRAL SPECIES	12	ENSGT00390000008926	ENSGT00940000155126 #8	ENSGT00390000004553 #9	ENSGT00940000157295 #11	ENSGT00940000156532 #12	ENSGT00720000108792.B #13	ENSGT00940000155053 #14	ENSGT00940000157137 #16	ENSGT00390000002231.d.b	ENSGT00940000154695 #17	ENSGT00530000065303.j	ENSGT00940000157192 #18	ENSGT00530000063186.b.b #19	ENSGT01030000234570.d.a #20	ENSGT00940000157652 #21	ENSGT00530000063688.a #22	ENSGT00390000001447.qb #23	ENSGT01030000235330.d	ENSGT00640000091496 #24	ENSGT00940000156597.b #26	ENSGT00940000158720.c.b.x ##34	ENSGT00940000159094 #30	ENSGT00940000156307.b #31	ENSGT00390000012547.b #32	ENSGT00390000004840 #33	ENSGT00940000156190.h	ENSGT00940000159232.h.a ##35	ENSGT00940000159232.h.b #35	ENSGT00940000158720.c.a ##34	ENSGT00940000158720.c.b.w ##34	ENSGT00940000159743
Monodontidae	ANCESTRAL SPECIES	10	ENSGT00390000015276	ENSGT00390000008926	ENSGT00940000155126 #8	ENSGT00390000004553 #9	ENSGT00940000157295 #11	ENSGT00940000156532 #12	ENSGT00720000108792.B #13	ENSGT00940000155053 #14	ENSGT00940000157137 #16	ENSGT00940000154695 #17	ENSGT00530000065303.j	ENSGT00940000157192 #18	ENSGT00530000063186.b.b #19	ENSGT01030000234570.d.a #20	ENSGT00940000157652 #21	ENSGT00530000063688.a #22	ENSGT00390000001447.qb #23	ENSGT01030000235330.d	ENSGT00640000091496 #24	ENSGT00940000156597.b #26	ENSGT00940000158720.c.b.x ##34	ENSGT00940000159094 #30	ENSGT00940000156307.b #31	ENSGT00390000012547.b #32	ENSGT00390000004840 #33	ENSGT00940000156190.h	ENSGT00940000156190.g	ENSGT00940000159232.h.b #35	ENSGT00940000158720.c.a ##34	ENSGT00940000158720.c.b.w ##34	ENSGT00390000006670.d
Narwhal	MODERN SPECIES	302	MREG (ENSMMNG00015006946)	FN1 (ENSMMNG00015007016) #8	ATIC (ENSMMNG00015007140) #9	ABCA12 (ENSMMNG00015007237) #11	BARD1 (ENSMMNG00015007443) #12	VWC2L (ENSMMNG00015007616) #13	SPAG16 (ENSMMNG00015007641) #14	IKZF2 (ENSMMNG00015007711) #16	ERBB4 (ENSMMNG00015007770) #17	ENSMMNG00015007841	CPS1 (ENSMMNG00015007884) #18	LANCL1 (ENSMMNG00015008039) #19	MYL1 (ENSMMNG00015008068) #20	ENSMMNG00015008099	ACADL (ENSMMNG00015008110) #21	KANSL1L (ENSMMNG00015008134) #22	ENSMMNG00015008179 #23	UNC80 (ENSMMNG00015008270) #24	MAP2 (ENSMMNG00015008438) #26	ENSMMNG00015008487 ##34	PTH2R (ENSMMNG00015008501) #30	PIKFYVE (ENSMMNG00015008559) #31	IDH1 (ENSMMNG00015008654) #32	C2orf80 (ENSMMNG00015008684) #33	CRYGA (ENSMMNG00015008711)	CRYGC (ENSMMNG00015008725) #35	ENSMMNG00015008733 ##34	PLEKHM3 (ENSMMNG00015008741)	ENSMMNG00015005195	FZD5 (ENSMMNG00015005204)	ENSMMNG00015005216
Beluga whale	MODERN SPECIES	84	XRCC5 (ENSDLEG00000011573)	TMEM169 (ENSDLEG00000011562)	MREG (ENSDLEG00000011537)	FN1 (ENSDLEG00000011437) #8	ATIC (ENSDLEG00000011357) #9	ABCA12 (ENSDLEG00000011292) #11	BARD1 (ENSDLEG00000011262) #12	VWC2L (ENSDLEG00000011244) #13	IKZF2 (ENSDLEG00000011195) #16	ERBB4 (ENSDLEG00000011065) #17	ENSDLEG00000011044	CPS1 (ENSDLEG00000010899) #18	LANCL1 (ENSDLEG00000010841) #19	ENSDLEG00000010817 #20	ACADL (ENSDLEG00000010802) #21	KANSL1L (ENSDLEG00000010779) #22	ENSDLEG00000010744 #23	ENSDLEG00000010732	UNC80 (ENSDLEG00000010609) #24	MAP2 (ENSDLEG00000010499) #26	ENSDLEG00000010475 ##34	PTH2R (ENSDLEG00000010408) #30	PIKFYVE (ENSDLEG00000010278) #31	IDH1 (ENSDLEG00000010202) #32	C2orf80 (ENSDLEG00000010165) #33	CRYGB (ENSDLEG00000010148)	ENSDLEG00000010132 #35	CRYGD (ENSDLEG00000010113) ##34	ENSDLEG00000010093 ##34	ENSDLEG00000010082	PLEKHM3 (ENSDLEG00000010056)
Vaquita	MODERN SPECIES	18	FN1 (ENSPSNG00000016255) #8	ATIC (ENSPSNG00000016623) #9	ABCA12 (ENSPSNG00000016762) #11	BARD1 (ENSPSNG00000017308) #12	VWC2L (ENSPSNG00000017630) #13	ENSPSNG00000017666	SPAG16 (ENSPSNG00000017700) #14	IKZF2 (ENSPSNG00000017845) #16	ENSPSNG00000017988	ERBB4 (ENSPSNG00000018144) #17	ENSPSNG00000018762	CPS1 (ENSPSNG00000018881) #18	LANCL1 (ENSPSNG00000019514) #19	MYL1 (ENSPSNG00000019567) #20	ACADL (ENSPSNG00000019649) #21	KANSL1L (ENSPSNG00000019694) #22	ENSPSNG00000019741 #23	UNC80 (ENSPSNG00000020123) #24	MAP2 (ENSPSNG00000021466) #26	ENSPSNG00000021538 ##34	PTH2R (ENSPSNG00000021559) #30	PIKFYVE (ENSPSNG00000021640) #31	IDH1 (ENSPSNG00000021741) #32	C2orf80 (ENSPSNG00000021785) #33	CRYGB (ENSPSNG00000021815) ##35	CRYGC (ENSPSNG00000021832) #35	CRYGD (ENSPSNG00000021845) ##34	ENSPSNG00000021854 ##34	PLEKHM3 (ENSPSNG00000021878)	ENSPSNG00000021899	ENSPSNG00000021913
Dolphin	MODERN SPECIES	2312															ACADL (ENSTTRG00000000911) #21	KANSL1L (ENSTTRG00000000909) #22	RPE (ENSTTRG00000000908) #23	ENSTTRG00000000907 #24	ENSTTRG00000000906 #24	MAP2 (ENSTTRG00000000903) #26
Sperm whale	MODERN SPECIES	11	ATIC (ENSPCTG00005010239) #9	ABCA12 (ENSPCTG00005009725) #11	BARD1 (ENSPCTG00005009198) #12	VWC2L (ENSPCTG00005009115) #13	SPAG16 (ENSPCTG00005009033) #14	IKZF2 (ENSPCTG00005008691) #16	ENSPCTG00005008634	ERBB4 (ENSPCTG00005008147) #17	ENSPCTG00005008116	CPS1 (ENSPCTG00005007806) #18	LANCL1 (ENSPCTG00005007711) #19	ENSPCTG00005007695 #20	ENSPCTG00005007683 #20	MYL1 (ENSPCTG00005007638) #20	ACADL (ENSPCTG00005007603) #21	KANSL1L (ENSPCTG00005007546) #22	RPE (ENSPCTG00005007416) #23	UNC80 (ENSPCTG00005006733) #24	MAP2 (ENSPCTG00005006282) #26	ENSPCTG00005006233 ##34	PTH2R (ENSPCTG00005006194) #30	PIKFYVE (ENSPCTG00005005700) #31	IDH1 (ENSPCTG00005005612) #32	C2orf80 (ENSPCTG00005005458) #33	CRYGB (ENSPCTG00005005428) ##35	ENSPCTG00005005404 ##35	CRYGC (ENSPCTG00005005389) #35	CRYGD (ENSPCTG00005005372) ##34	ENSPCTG00005005346 ##34	PLEKHM3 (ENSPCTG00005005303)	FZD5 (ENSPCTG00005005280)
Blue whale	MODERN SPECIES	18	ABCA12 (ENSBMSG00010003607) #11	BARD1 (ENSBMSG00010003318) #12	VWC2L (ENSBMSG00010003263) #13	ENSBMSG00010003250	ENSBMSG00010003241	SPAG16 (ENSBMSG00010003224) #14	IKZF2 (ENSBMSG00010003187) #16	ENSBMSG00010003157	ERBB4 (ENSBMSG00010003029) #17	ENSBMSG00010002996	CPS1 (ENSBMSG00010002893) #18	LANCL1 (ENSBMSG00010002864) #19	MYL1 (ENSBMSG00010002843) #20	ENSBMSG00010002831	ACADL (ENSBMSG00010002817) #21	KANSL1L (ENSBMSG00010002800) #22	ENSBMSG00010002786 #23	UNC80 (ENSBMSG00010002392) #24	MAP2 (ENSBMSG00010001833) #26	ENSBMSG00010001803 ##34	PTH2R (ENSBMSG00010001780) #30	PIKFYVE (ENSBMSG00010001711) #31	IDH1 (ENSBMSG00010001674) #32	ENSBMSG00010001666	ENSBMSG00010001661	METTL21A (ENSBMSG00010001644)	CREB1 (ENSBMSG00010001606)	KLF7 (ENSBMSG00010001534)	FASTKD2 (ENSBMSG00010001509)	MDH1B (ENSBMSG00010001465)	DYTN (ENSBMSG00010001424)
Pecora	ANCESTRAL SPECIES	16	ENSGT00390000015276	ENSGT00940000156882	ENSGT00390000008926	ENSGT00940000155126 #8	ENSGT00390000004553 #9	ENSGT00940000157295 #11	ENSGT00940000156532 #12	ENSGT00720000108792.B #13	ENSGT00940000155053 #14	ENSGT00940000157137 #16	ENSGT00940000154695 #17	ENSGT00940000157192 #18	ENSGT00530000063186.b.b #19	ENSGT01030000234570.d.a #20	ENSGT00940000157652 #21	ENSGT00530000063688.a #22	ENSGT00390000001447 #23	ENSGT00640000091496 #24	ENSGT00940000156597.b #26	ENSGT00940000158720.c.b.t ##34	ENSGT00940000159094 #30	ENSGT00940000156307.b #31	ENSGT00940000177631	ENSGT00390000012547.b #32	ENSGT00390000004840 #33	ENSGT00940000156190.h	ENSGT00940000159232.h.a ##35	ENSGT00940000156190.g	ENSGT00940000159232.h.b #35	ENSGT00940000158720.c.a ##34	ENSGT00940000158720.c.b.s ##34
Percora_a	ANCESTRAL SPECIES	5	ENSGT00390000015276	ENSGT00940000156882	ENSGT00390000008926	ENSGT00940000155126 #8	ENSGT00390000004553 #9	ENSGT00940000157295 #11	ENSGT00940000156532 #12	ENSGT00720000108792.B #13	ENSGT00940000155053 #14	ENSGT00940000157137 #16	ENSGT00940000154695 #17	ENSGT00940000157192 #18	ENSGT00530000063186.b.b #19	ENSGT01030000234570.d.a #20	ENSGT00940000157652 #21	ENSGT00530000063688.a #22	ENSGT00390000001447 #23	ENSGT00640000091496 #24	ENSGT00940000156597.b #26	ENSGT00940000158720.c.b.t ##34	ENSGT00940000159094 #30	ENSGT00940000156307.b #31	ENSGT00940000177631	ENSGT00390000012547.b #32	ENSGT00390000004840 #33	ENSGT00940000156190.h	ENSGT00940000159232.h.a ##35	ENSGT00940000159232.h.b #35	ENSGT00940000158720.c.a ##34	ENSGT00940000158720.c.b.s ##34	ENSGT00940000159743
Bovidae	ANCESTRAL SPECIES	8	ENSGT00390000015276	ENSGT00940000156882	ENSGT00390000008926	ENSGT00940000155126 #8	ENSGT00390000004553 #9	ENSGT00940000157295 #11	ENSGT00940000156532.k #12	ENSGT00720000108792.B #13	ENSGT00940000155053 #14	ENSGT00940000157137 #16	ENSGT00940000154695 #17	ENSGT00940000157192 #18	ENSGT00530000063186.b.b #19	ENSGT01030000234570.d.a #20	ENSGT00940000157652 #21	ENSGT00530000063688.a #22	ENSGT00390000001447 #23	ENSGT00640000091496 #24	ENSGT00940000156597.b #26	ENSGT00940000158720.c.b.t ##34	ENSGT00940000159094 #30	ENSGT00940000156307.b #31	ENSGT00940000177631	ENSGT00390000012547.b #32	ENSGT00390000004840 #33	ENSGT00940000156190.h	ENSGT00940000159232.h.a ##35	ENSGT00940000156190.g	ENSGT00940000159232.h.b #35	ENSGT00940000158720.c.a ##34	ENSGT00940000153593.c.b
Caprinae	ANCESTRAL SPECIES	5	ENSGT00940000156882	ENSGT00390000008926	ENSGT00940000155126 #8	ENSGT00390000004553 #9	ENSGT00940000157295 #11	ENSGT00940000156532.k.a #12	ENSGT00720000108792.B #13	ENSGT00940000155053 #14	ENSGT00940000157137 #16	ENSGT00940000154695 #17	ENSGT01010000228811	ENSGT00940000157192 #18	ENSGT00530000063186.b.b #19	ENSGT01030000234570.d.a #20	ENSGT00940000157652 #21	ENSGT00530000063688.a #22	ENSGT00390000001447.lb.a #23	ENSGT00640000091496 #24	ENSGT00940000156597.b #26	ENSGT00940000158720.c.b.t ##34	ENSGT00940000159094 #30	ENSGT00940000156307.b #31	ENSGT00390000012547.b.g #32	ENSGT00390000004840 #33	ENSGT00940000156190.h	ENSGT00940000159232.h.a ##35	ENSGT00940000159232.h.b #35	ENSGT00940000158720.c.a ##34	ENSGT00940000153593.c.b	ENSGT00940000158720.c.b.s ##34	ENSGT00940000159743
Rambouillet Sheep	MODERN SPECIES	11	FN1 (ENSOARG00020024839) #8	ATIC (ENSOARG00020024672) #9	ABCA12 (ENSOARG00020024186) #11	ENSOARG00020023630 #12	VWC2L (ENSOARG00020023565) #13	SPAG16 (ENSOARG00020023425) #14	IKZF2 (ENSOARG00020023289) #16	ERBB4 (ENSOARG00020022203) #17	ENSOARG00020022121	ENSOARG00020022071	ENSOARG00020022058	CPS1 (ENSOARG00020021614) #18	LANCL1 (ENSOARG00020021560) #19	MYL1b (ENSOARG00020021419) #20	ACADL (ENSOARG00020021309) #21	KANSL1L (ENSOARG00020021126) #22	RPE (ENSOARG00020021044) #23	UNC80 (ENSOARG00020019570) #24	MAP2 (ENSOARG00020019287) #26	ENSOARG00020019223	ENSOARG00020019192 ##34	PTH2R (ENSOARG00020018956) #30	ENSOARG00020018915	PIKFYVE (ENSOARG00020017062) #31	IDH1 (ENSOARG00020016933) #32	C2orf80 (ENSOARG00020016679) #33	CRYGA (ENSOARG00020016623)	CRYGB (ENSOARG00020016583) ##35	CRYGC (ENSOARG00020016523) #35	CRYGD (ENSOARG00020016483) ##34	ENSOARG00020016435 ##34
Goat	MODERN SPECIES	11	MREG (ENSCHIG00000024433)	FN1 (ENSCHIG00000021438) #8	ATIC (ENSCHIG00000018659) #9	ABCA12 (ENSCHIG00000019371) #11	ENSCHIG00000021676 #12	VWC2L (ENSCHIG00000023299) #13	ENSCHIG00000024996 #14	ENSCHIG00000025009 #14	IKZF2 (ENSCHIG00000008623) #16	ENSCHIG00000025711 #17	ENSCHIG00000015255	CPS1 (ENSCHIG00000025029) #18	LANCL1 (ENSCHIG00000015499) #19	MYL1 (ENSCHIG00000016096) #20	ACADL (ENSCHIG00000012492) #21	KANSL1L (ENSCHIG00000025531) #22	ENSCHIG00000017628 #23	UNC80 (ENSCHIG00000023318) #24	MAP2 (ENSCHIG00000000510) #26	ENSCHIG00000015978 ##34	PTH2R (ENSCHIG00000003956) #30	ENSCHIG00000011874	PIKFYVE (ENSCHIG00000018742) #31	ENSCHIG00000018336 #32	C2orf80 (ENSCHIG00000012414) #33	CRYGA (ENSCHIG00000010538)	ENSCHIG00000006930	ENSCHIG00000018066 #35	ENSCHIG00000014620 ##34	ENSCHIG00000012148	ENSCHIG00000012358 ##34
Bovinae	ANCESTRAL SPECIES	5	ENSGT00390000015276	ENSGT00940000156882	ENSGT00390000008926	ENSGT00940000155126 #8	ENSGT00390000004553 #9	ENSGT00940000157295 #11	ENSGT00940000156532.k #12	ENSGT00720000108792.B #13	ENSGT00940000155053 #14	ENSGT00940000157137 #16	ENSGT00940000154695 #17	ENSGT00940000157192 #18	ENSGT00530000063186.b.b #19	ENSGT01030000234570.d.a #20	ENSGT00940000157652 #21	ENSGT00530000063688.a #22	ENSGT00390000001447 #23	ENSGT00640000091496 #24	ENSGT00940000156597.b #26	ENSGT00940000158720.c.b.t ##34	ENSGT00940000159094 #30	ENSGT00950000182965.b	ENSGT00940000156307.b #31	ENSGT00940000177631	ENSGT00390000012547.b #32	ENSGT00390000004840 #33	ENSGT00940000156190.h	ENSGT00940000156190.g	ENSGT00940000159232.h.b #35	ENSGT00940000158720.c.a ##34	ENSGT00940000153593.c.b
Bos	ANCESTRAL SPECIES	6	ENSGT00390000015276	ENSGT00940000156882	ENSGT00390000008926	ENSGT00940000155126 #8	ENSGT00390000004553 #9	ENSGT00940000157295 #11	ENSGT00940000156532.k #12	ENSGT00720000108792.B #13	ENSGT00940000155053 #14	ENSGT00940000157137 #16	ENSGT00940000154695 #17	ENSGT00940000157192 #18	ENSGT00530000063186.b.b #19	ENSGT01030000234570.d.a #20	ENSGT00940000157652 #21	ENSGT00530000063688.a #22	ENSGT00390000001447 #23	ENSGT00640000091496 #24	ENSGT00940000156597.b #26	ENSGT00940000158720.c.b.t ##34	ENSGT00940000159094 #30	ENSGT00940000156307.b #31	ENSGT00940000177631	ENSGT00390000012547.b #32	ENSGT00390000004840 #33	ENSGT00940000156190.h	ENSGT00940000156190.g	ENSGT00940000159232.h.b #35	ENSGT00940000158720.c.a ##34	ENSGT00940000158720.c.b.s ##34	ENSGT00940000159743
Bos_a	ANCESTRAL SPECIES	4	ENSGT00390000015276	ENSGT00940000156882	ENSGT00390000008926	ENSGT00940000155126 #8	ENSGT00390000004553 #9	ENSGT00940000157295 #11	ENSGT00940000156532.k #12	ENSGT00720000108792.B #13	ENSGT00940000155053 #14	ENSGT00940000157137 #16	ENSGT00940000154695 #17	ENSGT00940000157192 #18	ENSGT00530000063186.b.b #19	ENSGT01030000234570.d.a #20	ENSGT00940000157652 #21	ENSGT00530000063688.a #22	ENSGT00390000001447 #23	ENSGT00640000091496 #24	ENSGT00940000156597.b #26	ENSGT00940000158720.c.b.t ##34	ENSGT00940000159094 #30	ENSGT00940000156307.b #31	ENSGT00390000012547.b #32	ENSGT00390000004840 #33	ENSGT00940000156190.h	ENSGT00940000159232.h.a ##35	ENSGT00940000159232.h.b #35	ENSGT00940000158720.c.a ##34	ENSGT00940000158720.c.b.s ##34	ENSGT00940000159743	ENSGT00940000162639
Wild yak	MODERN SPECIES	192												CPS1 (ENSBMUG00000002799) #18	LANCL1 (ENSBMUG00000002694) #19	MYL1 (ENSBMUG00000002649) #20	ACADL (ENSBMUG00000002614) #21	KANSL1L (ENSBMUG00000002578) #22	ENSBMUG00000002517 #23	UNC80 (ENSBMUG00000002413) #24	MAP2 (ENSBMUG00000002216) #26	ENSBMUG00000002118 ##34	PTH2R (ENSBMUG00000002078) #30	ENSBMUG00000002057	PIKFYVE (ENSBMUG00000001934) #31
Domestic yak	MODERN SPECIES	11	TMEM169 (ENSBGRG00000002710)	PECR (ENSBGRG00000002736)	FN1 (ENSBGRG00000002811) #8	ATIC (ENSBGRG00000002957) #9	ABCA12 (ENSBGRG00000003073) #11	BARD1 (ENSBGRG00000003261) #12	VWC2L (ENSBGRG00000003498) #13	SPAG16 (ENSBGRG00000003519) #14	IKZF2 (ENSBGRG00000003601) #16	ENSBGRG00000003764	ERBB4 (ENSBGRG00000003801) #17	CPS1 (ENSBGRG00000004265) #18	LANCL1 (ENSBGRG00000004687) #19	MYL1 (ENSBGRG00000004749) #20	ACADL (ENSBGRG00000004885) #21	KANSL1L (ENSBGRG00000004930) #22	ENSBGRG00000005051 #23	UNC80 (ENSBGRG00000005202) #24	MAP2 (ENSBGRG00000005995) #26	ENSBGRG00000006119 ##34	PTH2R (ENSBGRG00000006150) #30	PIKFYVE (ENSBGRG00000006248) #31	IDH1 (ENSBGRG00000006637) #32	C2orf80 (ENSBGRG00000006683) #33	CRYGA (ENSBGRG00000006786)	ENSBGRG00000006816	CRYGC (ENSBGRG00000006857) #35	CRYGD (ENSBGRG00000006881) ##34	ENSBGRG00000006903 ##34	PLEKHM3 (ENSBGRG00000006928)	ENSBGRG00000007042
Bos_b	ANCESTRAL SPECIES	3	ENSGT00940000163284	ENSGT00550000074921	ENSGT00390000004860	ENSGT00390000011897	ENSGT00940000157238	ENSGT00940000160986	ENSGT00940000157444	ENSGT00940000159941	ENSGT00390000010053	ENSGT00940000154471.a.b.a.a	ENSGT00940000159597	ENSGT00390000006976	ENSGT00390000016408	ENSGT00940000158892.b	ENSGT00940000157652 #21	ENSGT00530000063688.a #22	ENSGT00390000001447 #23	ENSGT00640000091496 #24	ENSGT00940000156597.b #26	ENSGT00940000158720.c.b.t ##34	ENSGT00940000159094 #30	ENSGT00950000182965.b	ENSGT00940000156307.b #31	ENSGT00940000177631	ENSGT00390000012547.b #32	ENSGT00390000004840 #33	ENSGT00940000156190.h	ENSGT00940000156190.g	ENSGT00940000159232.h.b #35	ENSGT00940000158720.c.a ##34	ENSGT00940000158720.c.b.s ##34
Hybrid Bos Indicus	MODERN SPECIES	11	VWC2L (ENSBIXG00005004449) #13	SPAG16 (ENSBIXG00005004460) #14	IKZF2 (ENSBIXG00005004492) #16	ENSBIXG00005026391	ENSBIXG00005026408	ENSBIXG00005026433	ENSBIXG00005007409	ERBB4 (ENSBIXG00005026738) #17	CPS1 (ENSBIXG00005027520) #18	LANCL1 (ENSBIXG00005027712) #19	MYL1 (ENSBIXG00005027778) #20	ENSBIXG00005004776	ENSBIXG00005027813	ENSBIXG00005027821	ACADL (ENSBIXG00005027851) #21	KANSL1L (ENSBIXG00005004802) #22	ENSBIXG00005004817 #23	UNC80 (ENSBIXG00005007598) #24	ENSBIXG00005028747 ##34	PTH2R (ENSBIXG00005028831) #30	ENSBIXG00005002284	PIKFYVE (ENSBIXG00005029111) #31	IDH1 (ENSBIXG00005001809) #32	C2orf80 (ENSBIXG00005005242) #33	CRYGA (ENSBIXG00005001634)	ENSBIXG00005029217	CRYGC (ENSBIXG00005029223) #35	CRYGD (ENSBIXG00005005265) ##34	ENSBIXG00005005279 ##34	PLEKHM3 (ENSBIXG00005001556)	ENSBIXG00005001549
Cow	MODERN SPECIES	11	ABCA12 (ENSBTAG00000003472) #11	ENSBTAG00000051517	BARD1 (ENSBTAG00000033690) #12	VWC2L (ENSBTAG00000053460) #13	ENSBTAG00000052399 #14	ENSBTAG00000018549 #14	IKZF2 (ENSBTAG00000037804) #16	ENSBTAG00000053477 #17	ENSBTAG00000005239	ERBB4 (ENSBTAG00000012647) #17	CPS1 (ENSBTAG00000016662) #18	LANCL1 (ENSBTAG00000015066) #19	MYL1 (ENSBTAG00000009707) #20	ENSBTAG00000010722	ACADL (ENSBTAG00000010579) #21	KANSL1L (ENSBTAG00000021600) #22	RPE (ENSBTAG00000054647) #23	UNC80 (ENSBTAG00000015415) #24	MAP2 (ENSBTAG00000018130) #26	ENSBTAG00000052197 ##34	PTH2R (ENSBTAG00000011992) #30	ENSBTAG00000002180	PIKFYVE (ENSBTAG00000002177) #31	ENSBTAG00000055312	IDH1 (ENSBTAG00000020527) #32	C2H2orf80 (ENSBTAG00000012888) #33	CRYGA (ENSBTAG00000049076)	CRYGB (ENSBTAG00000021770)	CRYGC (ENSBTAG00000014783) #35	CRYGD (ENSBTAG00000015054) ##34	ENSBTAG00000049856 ##34
American bison	MODERN SPECIES	3330	PECR (ENSBBBG00000008537)	MREG (ENSBBBG00000001636)	FN1 (ENSBBBG00000010079) #8	ATIC (ENSBBBG00000010156) #9	ABCA12 (ENSBBBG00000010212) #11	ENSBBBG00000010218	BARD1 (ENSBBBG00000010253) #12	VWC2L (ENSBBBG00000000125) #13	SPAG16 (ENSBBBG00000000106) #14	IKZF2 (ENSBBBG00000000044) #16	ERBB4 (ENSBBBG00000010300) #17	CPS1 (ENSBBBG00000010353) #18	LANCL1 (ENSBBBG00000010389) #19	MYL1 (ENSBBBG00000010407) #20	ACADL (ENSBBBG00000001806) #21	KANSL1L (ENSBBBG00000010441) #22	ENSBBBG00000007586 #23	UNC80 (ENSBBBG00000010561) #24	MAP2 (ENSBBBG00000010617) #26	ENSBBBG00000010626 ##34	PTH2R (ENSBBBG00000010642) #30	ENSBBBG00000010646	PIKFYVE (ENSBBBG00000010714) #31	IDH1 (ENSBBBG00000010731) #32	C2orf80 (ENSBBBG00000010761) #33	CRYGA (ENSBBBG00000010767)	CRYGB (ENSBBBG00000010771) ##35	CRYGC (ENSBBBG00000001889) #35	CRYGD (ENSBBBG00000010778) ##34	ENSBBBG00000010781	ENSBBBG00000010792 ##34
Siberian musk deer	MODERN SPECIES	352	FN1 (ENSMMSG00000022388) #8	ATIC (ENSMMSG00000022097) #9	ABCA12 (ENSMMSG00000021923) #11	BARD1 (ENSMMSG00000021660) #12	VWC2L (ENSMMSG00000021613) #13	SPAG16 (ENSMMSG00000021415) #14	IKZF2 (ENSMMSG00000021166) #16	ENSMMSG00000021126	ERBB4 (ENSMMSG00000020665) #17	ENSMMSG00000020623	CPS1 (ENSMMSG00000020103) #18	LANCL1 (ENSMMSG00000020057) #19	MYL1 (ENSMMSG00000019985) #20	ACADL (ENSMMSG00000019943) #21	ENSMMSG00000019930	KANSL1L (ENSMMSG00000019864) #22	ENSMMSG00000019805 #23	UNC80 (ENSMMSG00000019152) #24	MAP2 (ENSMMSG00000018946) #26	ENSMMSG00000018909 ##34	PTH2R (ENSMMSG00000018791) #30	ENSMMSG00000018713	PIKFYVE (ENSMMSG00000018585) #31	IDH1 (ENSMMSG00000018507) #32	C2orf80 (ENSMMSG00000018380) #33	CRYGA (ENSMMSG00000018345)	CRYGB (ENSMMSG00000018324) ##35	CRYGC (ENSMMSG00000018298) #35	CRYGD (ENSMMSG00000018278) ##34	ENSMMSG00000018240 ##34	PLEKHM3 (ENSMMSG00000018216)
Yarkand deer	MODERN SPECIES	31	ENSCHYG00000003753 #12	VWC2L (ENSCHYG00000003794) #13	SPAG16 (ENSCHYG00000003817) #14	ENSCHYG00000003836	IKZF2 (ENSCHYG00000003879) #16	ERBB4 (ENSCHYG00000003952) #17	ENSCHYG00000004056	ENSCHYG00000004063	ENSCHYG00000004069	CPS1 (ENSCHYG00000004084) #18	LANCL1 (ENSCHYG00000004128) #19	ENSCHYG00000004138	MYL1 (ENSCHYG00000004152) #20	ACADL (ENSCHYG00000004178) #21	ENSCHYG00000004220	KANSL1L (ENSCHYG00000004240) #22	ENSCHYG00000004274 #23	UNC80 (ENSCHYG00000000452) #24	MAP2 (ENSCHYG00000000996) #26	ENSCHYG00000001066	ENSCHYG00000001080 ##34	PTH2R (ENSCHYG00000001108) #30	ENSCHYG00000001125	PIKFYVE (ENSCHYG00000001177) #31	ENSCHYG00000001240 #32	C2orf80 (ENSCHYG00000001293) #33	CRYGA (ENSCHYG00000001333)	ENSCHYG00000001348	CRYGC (ENSCHYG00000001360) #35	CRYGD (ENSCHYG00000001364) ##34	ENSCHYG00000001381 ##34
Eulipotyphla	ANCESTRAL SPECIES	286																ENSGT00530000063688.a #22	ENSGT00390000001447 #23	ENSGT00640000091496 #24	ENSGT00940000156597.b #26
Hedgehog	MODERN SPECIES	4138																ENSEEUG00000013549 #22	ENSEEUG00000013515 #23	ENSEEUG00000013211 #24
Common shrew	MODERN SPECIES	3135																KANSL1L (ENSSARG00000011460) #22	ENSSARG00000011436 #23	ENSSARG00000011402 #24
Atlantogenata	ANCESTRAL SPECIES	9	ENSGT00390000015276	ENSGT00940000156882	ENSGT00390000008926	ENSGT00940000155126 #8	ENSGT00390000004553 #9	ENSGT00940000157295 #11	ENSGT00940000156532 #12	ENSGT00720000108792.B #13	ENSGT00940000155053 #14	ENSGT00940000157137 #16	ENSGT00940000154695 #17	ENSGT00940000157192 #18	ENSGT00530000063186.b.b #19	ENSGT01030000234570.d.a #20	ENSGT00940000157652 #21	ENSGT00530000063688.a #22	ENSGT00390000001447 #23	ENSGT00640000091496 #24	ENSGT00940000156597.b #26	ENSGT00940000159094 #30	ENSGT00940000156307.b #31	ENSGT00390000012547.b #32	ENSGT00390000004840 #33	ENSGT00940000158720.c.b ##34	ENSGT00940000159743	ENSGT00940000162639	ENSGT00940000154453.b.a.b	ENSGT00940000154453.b.b	ENSGT00940000157249	ENSGT00940000155408	ENSGT00940000155235
Afrotheria	ANCESTRAL SPECIES	1	ENSGT00390000015276	ENSGT00940000156882	ENSGT00390000008926	ENSGT00940000155126 #8	ENSGT00390000004553 #9	ENSGT00940000157295 #11	ENSGT00940000156532 #12	ENSGT00720000108792.B #13	ENSGT00940000155053 #14	ENSGT00940000157137 #16	ENSGT00940000154695 #17	ENSGT00940000157192 #18	ENSGT00530000063186.b.b #19	ENSGT01030000234570.d.a #20	ENSGT00940000157652 #21	ENSGT00530000063688.a #22	ENSGT00390000001447 #23	ENSGT00640000091496 #24	ENSGT00940000156597.b #26	ENSGT00940000159094 #30	ENSGT00940000156307.b #31	ENSGT00390000012547.b #32	ENSGT00390000004840 #33	ENSGT00940000159232.h.a ##35	ENSGT00940000159743	ENSGT00940000162639	ENSGT00940000154453.b.b	ENSGT00940000157249	ENSGT00940000155408	ENSGT00940000155235	ENSGT00940000161508
Afrotheria_a	ANCESTRAL SPECIES	1	ENSGT00390000015276	ENSGT00940000156882	ENSGT00390000008926	ENSGT00940000155126 #8	ENSGT00390000004553 #9	ENSGT00940000157295 #11	ENSGT00940000156532 #12	ENSGT00720000108792.B #13	ENSGT00940000155053 #14	ENSGT00940000157137 #16	ENSGT00940000154695 #17	ENSGT00940000157192 #18	ENSGT00530000063186.b.b #19	ENSGT01030000234570.d.a #20	ENSGT00940000157652 #21	ENSGT00530000063688.a #22	ENSGT00390000001447 #23	ENSGT00640000091496 #24	ENSGT00940000156597.b #26	ENSGT00940000159094 #30	ENSGT00940000156307.b #31	ENSGT00390000012547.b #32	ENSGT00390000004840 #33	ENSGT00940000159232.h.a ##35	ENSGT00940000159743	ENSGT00940000162639	ENSGT00940000154453.b.b	ENSGT00940000157249	ENSGT00940000155408	ENSGT00940000155235	ENSGT00940000161508
Elephant	MODERN SPECIES	301	MREG (ENSLAFG00000018636)	FN1 (ENSLAFG00000016024) #8	ATIC (ENSLAFG00000002520) #9	ABCA12 (ENSLAFG00000005158) #11	BARD1 (ENSLAFG00000000546) #12	VWC2L (ENSLAFG00000010991) #13	ENSLAFG00000010985 #14	IKZF2 (ENSLAFG00000008236) #16	ENSLAFG00000032609 #17	ENSLAFG00000030559 #17	ENSLAFG00000006617 #17	CPS1 (ENSLAFG00000005505) #18	LANCL1 (ENSLAFG00000018697) #19	MYL1 (ENSLAFG00000005451) #20	ACADL (ENSLAFG00000015099) #21	KANSL1L (ENSLAFG00000014134) #22	ENSLAFG00000014127 #23	UNC80 (ENSLAFG00000008065) #24	MAP2 (ENSLAFG00000027965) #26	PTH2R (ENSLAFG00000009988) #30	PIKFYVE (ENSLAFG00000016887) #31	IDH1 (ENSLAFG00000016882) #32	C2orf80 (ENSLAFG00000016878) #33	ENSLAFG00000016874 ##35	ENSLAFG00000016869 ##35	PLEKHM3 (ENSLAFG00000030211)	FZD5 (ENSLAFG00000017105)	ENSLAFG00000021558	METTL21A (ENSLAFG00000017103)	CREB1 (ENSLAFG00000013257)	KLF7 (ENSLAFG00000005822)
Hyrax	MODERN SPECIES	3309																KANSL1L (ENSPCAG00000008195) #22	ENSPCAG00000008160 #23	ENSPCAG00000007949 #24
Tenrec	MODERN SPECIES	8150															ACADL (ENSETEG00000005351) #21	KANSL1L (ENSETEG00000005350) #22	ENSETEG00000005346 #23
Xenarthra	ANCESTRAL SPECIES	545												ENSGT00940000157192 #18	ENSGT00530000063186.b.b #19	ENSGT01030000234570.d.a #20	ENSGT00940000157652 #21	ENSGT00530000063688.a #22	ENSGT00390000001447 #23	ENSGT00640000091496 #24	ENSGT00940000156597.b #26	ENSGT00940000159094 #30
Sloth	MODERN SPECIES	3647																ENSCHOG00000003284 #22
Armadillo	MODERN SPECIES	2728										ENSDNOG00000010363 #18	ENSDNOG00000041035 #18	ENSDNOG00000030935 #18	LANCL1 (ENSDNOG00000035760) #19	MYL1 (ENSDNOG00000040106) #20	ACADL (ENSDNOG00000006287) #21	KANSL1L (ENSDNOG00000037785) #22	ENSDNOG00000003193 #23	UNC80 (ENSDNOG00000004075) #24	MAP2 (ENSDNOG00000034820) #26	ENSDNOG00000032423 #30
Marsupialia	ANCESTRAL SPECIES	8	ENSGT00390000015276	ENSGT00940000156882	ENSGT00390000008926	ENSGT00940000155126 #8	ENSGT00390000004553 #9	ENSGT00940000157295 #11	ENSGT00940000156532 #12	ENSGT00720000108792.B #13	ENSGT00940000155053 #14	ENSGT00940000157137 #16	ENSGT00940000154695 #17	ENSGT00940000157192 #18	ENSGT00530000063186.b.b #19	ENSGT01030000234570.d.a #20	ENSGT00940000157652 #21	ENSGT00530000063688.a #22	ENSGT00390000001447 #23	ENSGT00640000091496 #24	ENSGT00940000156597.b #26	ENSGT00940000159094 #30	ENSGT00940000156307.b #31	ENSGT00390000012547.b #32	ENSGT00960000187202	ENSGT00390000004840 #33	ENSGT00940000156190.i	ENSGT00940000159232.e #35	ENSGT00940000159232.f #35	ENSGT00940000158720.a #34	ENSGT00940000163272 #37	ENSGT00940000158720.b #34	ENSGT00940000159743
Marsupialia_b	ANCESTRAL SPECIES	7	ENSGT00390000015276	ENSGT00940000156882	ENSGT00390000008926	ENSGT00940000155126 #8	ENSGT00390000004553 #9	ENSGT00940000157295 #11	ENSGT00940000156532 #12	ENSGT00720000108792.B #13	ENSGT00940000155053 #14	ENSGT00940000157137 #16	ENSGT00940000154695 #17	ENSGT00940000157192 #18	ENSGT00530000063186.b.b #19	ENSGT01030000234570.d.a #20	ENSGT00940000157652 #21	ENSGT00530000063688.a #22	ENSGT00390000001447 #23	ENSGT00640000091496 #24	ENSGT00940000156597.b #26	ENSGT00940000159094 #30	ENSGT00940000156307.b #31	ENSGT00390000012547.b #32	ENSGT00960000187202	ENSGT00390000004840 #33	ENSGT00940000156190.j	ENSGT00940000156190.i	ENSGT00940000159232.e #35	ENSGT00940000159232.f #35	ENSGT00940000158720.a #34	ENSGT00940000163272 #37	ENSGT00940000158720.b #34
Diprotodontia	ANCESTRAL SPECIES	31	ENSGT00390000015276	ENSGT00940000156882.b	ENSGT00390000008926	ENSGT00940000155126 #8	ENSGT00390000004553 #9	ENSGT00940000157295 #11	ENSGT00940000156532 #12	ENSGT00720000108792.B #13	ENSGT00940000155053 #14	ENSGT00940000157137 #16	ENSGT00940000154695 #17	ENSGT00940000157192 #18	ENSGT00530000063186.b.b #19	ENSGT01030000234570.d.a #20	ENSGT00940000157652 #21	ENSGT00530000063688.a #22	ENSGT00390000001447 #23	ENSGT00640000091496 #24	ENSGT00940000156597.b #26	ENSGT00940000159094 #30	ENSGT00940000156307.b #31	ENSGT00390000012547.b #32	ENSGT00960000187202	ENSGT00390000004840 #33	ENSGT00940000156190.j	ENSGT00940000156190.i	ENSGT00940000159232.e #35	ENSGT00940000159232.f #35	ENSGT00940000158720.a #34	ENSGT00940000158720.b #34	ENSGT00940000159743
Diprotodontia_a	ANCESTRAL SPECIES	30	ENSGT00390000015276	ENSGT00940000156882.b	ENSGT00390000008926	ENSGT00940000155126 #8	ENSGT00390000004553 #9	ENSGT00940000157295 #11	ENSGT00940000156532 #12	ENSGT00720000108792.B #13	ENSGT00940000155053 #14	ENSGT00940000157137 #16	ENSGT00940000154695 #17	ENSGT00940000157192 #18	ENSGT00530000063186.b.b #19	ENSGT01030000234570.d.a #20	ENSGT00940000157652 #21	ENSGT00530000063688.a #22	ENSGT00390000001447 #23	ENSGT00640000091496 #24	ENSGT00940000156597.b #26	ENSGT00940000159094 #30	ENSGT00940000156307.b #31	ENSGT00390000012547.b #32	ENSGT00960000187202	ENSGT00390000004840 #33	ENSGT00940000156190.j	ENSGT00940000156190.i	ENSGT00940000159232.e #35	ENSGT00940000159232.f #35	ENSGT00940000158720.a #34	ENSGT00940000158720.b #34	ENSGT00940000159743
Common wonbat	MODERN SPECIES	1038	ENSVURG00010003025	MREG (ENSVURG00010003034)	FN1 (ENSVURG00010003070) #8	ATIC (ENSVURG00010003185) #9	ABCA12 (ENSVURG00010003222) #11	BARD1 (ENSVURG00010003327) #12	VWC2L (ENSVURG00010003348) #13	ENSVURG00010003372 #14	ENSVURG00010003388	IKZF2 (ENSVURG00010003422) #16	ERBB4 (ENSVURG00010003549) #17	CPS1 (ENSVURG00010003725) #18	LANCL1 (ENSVURG00010003810) #19	MYL1 (ENSVURG00010003828) #20	ACADL (ENSVURG00010003860) #21	KANSL1L (ENSVURG00010003874) #22	ENSVURG00010003917 #23	UNC80 (ENSVURG00010003993) #24	ENSVURG00010004218 #26	PTH2R (ENSVURG00010004279) #30	ENSVURG00010004334	PIKFYVE (ENSVURG00010004366) #31	IDH1 (ENSVURG00010004499) #32	C2orf80 (ENSVURG00010004523) #33	CRYGA (ENSVURG00010004554)	ENSVURG00010004566	ENSVURG00010004571 #35	ENSVURG00010004579 #35	ENSVURG00010004591 #34	ENSVURG00010004601 #34	PLEKHM3 (ENSVURG00010004626)
koala	MODERN SPECIES	132									ENSPCIG00000000504 #14	IKZF2 (ENSPCIG00000000561) #16	ERBB4 (ENSPCIG00000024251) #17	CPS1 (ENSPCIG00000013468) #18	LANCL1 (ENSPCIG00000013464) #19	MYL1 (ENSPCIG00000013463) #20	ACADL (ENSPCIG00000013461) #21	KANSL1L (ENSPCIG00000013458) #22	ENSPCIG00000013457 #23	UNC80 (ENSPCIG00000013438) #24	MAP2 (ENSPCIG00000035392) #26	ENSPCIG00000004335	PTH2R (ENSPCIG00000037126) #30	PIKFYVE (ENSPCIG00000012094) #31	IDH1 (ENSPCIG00000012090) #32	ENSPCIG00000012086	ENSPCIG00000012083 #33	ENSPCIG00000012080	ENSPCIG00000012076	ENSPCIG00000034463 #35	ENSPCIG00000036210 #35	ENSPCIG00000031919 #34	ENSPCIG00000035095 #34
Wallaby	MODERN SPECIES	9778																KANSL1L (ENSMEUG00000014076) #22	ENSMEUG00000014068 #23
Tasmanian devil	MODERN SPECIES	2	FN1 (ENSSHAG00000009319) #8	ATIC (ENSSHAG00000010108) #9	ENSSHAG00000022770	ABCA12 (ENSSHAG00000011632) #11	BARD1 (ENSSHAG00000012998) #12	VWC2L (ENSSHAG00000014665) #13	ENSSHAG00000025155 #14	ENSSHAG00000004079 #14	IKZF2 (ENSSHAG00000001687) #16	ERBB4 (ENSSHAG00000014078) #17	ENSSHAG00000025581	CPS1 (ENSSHAG00000017472) #18	LANCL1 (ENSSHAG00000021780) #19	MYL1 (ENSSHAG00000017951) #20	ACADL (ENSSHAG00000024844) #21	KANSL1L (ENSSHAG00000001897) #22	ENSSHAG00000025167 #23	UNC80 (ENSSHAG00000029699) #24	MAP2 (ENSSHAG00000008479) #26	ENSSHAG00000003999 #30	PIKFYVE (ENSSHAG00000009450) #31	IDH1 (ENSSHAG00000010387) #32	ENSSHAG00000026792	ENSSHAG00000021554	ENSSHAG00000028589	ENSSHAG00000026286 #35	ENSSHAG00000011184 #35	CRYGD (ENSSHAG00000028541) #34	ENSSHAG00000011379 #37	PLEKHM3 (ENSSHAG00000011794)	FZD5 (ENSSHAG00000027632)
Opossum	MODERN SPECIES	6	ABCA12 (ENSMODG00000015628) #11	BARD1 (ENSMODG00000015631) #12	VWC2L (ENSMODG00000015633) #13	ENSMODG00000042235 #14	ENSMODG00000008370	ENSMODG00000048388	ENSMODG00000015663	ENSMODG00000025486 #14	IKZF2 (ENSMODG00000015683) #16	ERBB4 (ENSMODG00000015755) #17	ENSMODG00000028496	CPS1 (ENSMODG00000015793) #18	LANCL1 (ENSMODG00000015804) #19	MYL1 (ENSMODG00000015807) #20	ACADL (ENSMODG00000015819) #21	KANSL1L (ENSMODG00000015823) #22	ENSMODG00000015827 #23	UNC80 (ENSMODG00000015849) #24	ENSMODG00000049580 #26	PTH2R (ENSMODG00000015872) #30	PIKFYVE (ENSMODG00000015918) #31	IDH1 (ENSMODG00000015928) #32	ENSMODG00000041817	ENSMODG00000015937 #33	CRYGA (ENSMODG00000015939)	ENSMODG00000049632	ENSMODG00000044652 #35	CRYGD (ENSMODG00000051256) #34	ENSMODG00000024830 #37	PLEKHM3 (ENSMODG00000027343)	FZD5 (ENSMODG00000015949)
Platypus	MODERN SPECIES	18	IKZF2 (ENSOANG00000009330) #16	ENSOANG00000029131 #14	ENSOANG00000050142 #14	VWC2L (ENSOANG00000012633) #13	BARD1 (ENSOANG00000048485) #12	ABCA12 (ENSOANG00000012250) #11	ATIC (ENSOANG00000005769) #9	FN1 (ENSOANG00000006836) #8	MREG (ENSOANG00000036014)	ENSOANG00000015675	ERBB4 (ENSOANG00000007021) #17	CPS1 (ENSOANG00000011059) #18	LANCL1 (ENSOANG00000011057) #19	MYL1 (ENSOANG00000006278) #20	ACADL (ENSOANG00000013488) #21	KANSL1L (ENSOANG00000000302) #22	ENSOANG00000041439 #23	UNC80 (ENSOANG00000028875) #24	MAP2 (ENSOANG00000007871) #26	PIKFYVE (ENSOANG00000008007) #31	PTH2R (ENSOANG00000008008) #30	IDH1 (ENSOANG00000049618) #32	ENSOANG00000041548 #35	ENSOANG00000001408 #35	CREB1 (ENSOANG00000005816)	ABRAXAS1 (ENSOANG00000032008)	ENSOANG00000038220	ROCK1 (ENSOANG00000038524)	USP14 (ENSOANG00000007418)	ENSOANG00000043500	VSTM2A (ENSOANG00000040691)
Sauria	ANCESTRAL SPECIES	32	ENSGT00940000154349	ENSGT00940000163794	ENSGT00390000008926	ENSGT00940000155126 #8	ENSGT00390000004553 #9	ENSGT00940000157295 #11	ENSGT00940000156532 #12	ENSGT00720000108792.B #13	ENSGT00940000155053 #14	ENSGT00940000157137 #16	ENSGT00940000154695 #17	ENSGT00940000157192 #18	ENSGT00530000063186.b.b #19	ENSGT01030000234570.d.a #20	ENSGT00940000157652 #21	ENSGT00530000063688.a #22	ENSGT00390000001447 #23	ENSGT01030000235330	ENSGT00640000091496 #24	ENSGT00940000156597.b #26	ENSGT00940000159094 #30	ENSGT00940000156307.b #31	ENSGT00940000177631	ENSGT00390000012547.b #32	ENSGT00960000187202	ENSGT00390000004840 #33	ENSGT00940000156190	ENSGT00940000159232 #35	ENSGT00940000163494.a.b.g.b	ENSGT00940000159743	ENSGT00940000161191.B
Archelosauria	ANCESTRAL SPECIES	8	ENSGT00940000163794	ENSGT00390000008926	ENSGT00940000155126 #8	ENSGT00390000004553 #9	ENSGT00940000157295 #11	ENSGT00940000156532 #12	ENSGT00720000108792.B #13	ENSGT00940000155053 #14	ENSGT00940000157137 #16	ENSGT00940000154695 #17	ENSGT00940000157192 #18	ENSGT00960000189051	ENSGT00530000063186.b.b #19	ENSGT01030000234570.d.a #20	ENSGT00940000157652 #21	ENSGT00530000063688.a #22	ENSGT00390000001447 #23	ENSGT01030000235330	ENSGT00640000091496 #24	ENSGT00940000156597.b #26	ENSGT00940000159094 #30	ENSGT00940000156307.b #31	ENSGT00940000177631	ENSGT00390000012547.b #32	ENSGT00960000187202	ENSGT00390000004840 #33	ENSGT00940000163494.a.b.g.a	ENSGT00940000163322.a.b	ENSGT00940000156190	ENSGT00940000159232 #35	ENSGT00940000163494.a.b.g.b
Archosauria	ANCESTRAL SPECIES	6	ENSGT00940000163794	ENSGT00390000008926	ENSGT00940000155126 #8	ENSGT00390000004553 #9	ENSGT00940000157295 #11	ENSGT00940000156532 #12	ENSGT00720000108792.B #13	ENSGT00940000155053 #14	ENSGT00940000157137 #16	ENSGT00940000154695 #17	ENSGT00940000157192 #18	ENSGT00960000189051	ENSGT00530000063186.b.b #19	ENSGT01030000234570.d.a #20	ENSGT00940000157652 #21	ENSGT00530000063688.a #22	ENSGT00390000001447 #23	ENSGT01030000235330	ENSGT00640000091496 #24	ENSGT00940000156597.b #26	ENSGT00940000159094 #30	ENSGT00940000156307.b #31	ENSGT00940000177631	ENSGT00390000012547.b #32	ENSGT00960000187202	ENSGT00940000159743	ENSGT00940000161191.B	ENSGT00940000154453.b	ENSGT00940000157249	ENSGT00940000155408	ENSGT00940000155235
Aves	ANCESTRAL SPECIES	8	ENSGT00940000163794	ENSGT00390000008926	ENSGT00940000155126 #8	ENSGT00390000004553 #9	ENSGT00940000157295 #11	ENSGT00940000156532 #12	ENSGT00720000108792.B #13	ENSGT00940000155053 #14	ENSGT00940000157137 #16	ENSGT00940000154695 #17	ENSGT00940000157192 #18	ENSGT00960000189051	ENSGT00530000063186.b.b #19	ENSGT01030000234570.d.a #20	ENSGT00940000157652 #21	ENSGT00530000063688.a #22	ENSGT00390000001447 #23	ENSGT00640000091496 #24	ENSGT00940000156597.b #26	ENSGT00940000159094 #30	ENSGT00940000156307.b #31	ENSGT00940000177631	ENSGT00390000012547.b #32	ENSGT00940000154107.b.j.b	ENSGT00390000004840 #33	ENSGT00940000159232 #35	ENSGT00940000163494.a.b.g.b	ENSGT00940000155041	ENSGT00390000017619	ENSGT00500000044939	ENSGT00940000156089
Neognathae	ANCESTRAL SPECIES	6	ENSGT00940000163794	ENSGT00390000008926	ENSGT00940000155126 #8	ENSGT00390000004553 #9	ENSGT00940000157295 #11	ENSGT00940000156532 #12	ENSGT00720000108792.B #13	ENSGT00940000155053 #14	ENSGT00940000157137 #16	ENSGT00940000154695 #17	ENSGT00940000157192 #18	ENSGT00960000189051	ENSGT00530000063186.b.b #19	ENSGT01030000234570.d.a #20	ENSGT00940000157652 #21	ENSGT00530000063688.a #22	ENSGT00390000001447 #23	ENSGT00640000091496 #24	ENSGT00940000156597.b #26	ENSGT00940000160494	ENSGT00390000016619.a	ENSGT00940000156472	ENSGT00390000005923	ENSGT00940000160909	ENSGT00390000015818	ENSGT00940000158361	ENSGT00950000183184.a.a	ENSGT00390000006826	ENSGT00940000159898	ENSGT00940000160767	ENSGT00940000156186
Neognathae_b	ANCESTRAL SPECIES	7	ENSGT00940000163794	ENSGT00390000008926	ENSGT00940000155126 #8	ENSGT00390000004553 #9	ENSGT00940000157295 #11	ENSGT00940000156532 #12	ENSGT00720000108792.B #13	ENSGT00940000155053 #14	ENSGT00940000157137 #16	ENSGT00940000154695 #17	ENSGT00940000157192 #18	ENSGT00960000189051	ENSGT00530000063186.b.b #19	ENSGT01030000234570.d.a #20	ENSGT00940000157652 #21	ENSGT00530000063688.a #22	ENSGT00390000001447 #23	ENSGT00640000091496 #24	ENSGT00940000156597.b #26	ENSGT00940000160494	ENSGT00390000016619.a	ENSGT00940000156472	ENSGT00390000005923	ENSGT00940000160909	ENSGT00390000015818	ENSGT00940000158361	ENSGT00950000183184.a.a	ENSGT00940000159898	ENSGT00940000160767	ENSGT00940000156186	ENSGT00940000161229
Neognathae_c	ANCESTRAL SPECIES	9	ENSGT00940000163794	ENSGT00390000008926	ENSGT00940000155126 #8	ENSGT00390000004553 #9	ENSGT00940000157295 #11	ENSGT00940000156532 #12	ENSGT00720000108792.B #13	ENSGT00940000155053 #14	ENSGT00940000157137 #16	ENSGT00940000154695 #17	ENSGT00940000157192 #18	ENSGT00960000189051	ENSGT00530000063186.b.b #19	ENSGT01030000234570.d.a #20	ENSGT00940000157652 #21	ENSGT00530000063688.a #22	ENSGT00390000001447 #23	ENSGT00640000091496 #24	ENSGT00940000156597.b #26	ENSGT00940000160494	ENSGT00390000016619.a	ENSGT00940000156472	ENSGT00390000005923	ENSGT00940000160909	ENSGT00390000015818	ENSGT00940000158361	ENSGT00950000183184.a.a	ENSGT00940000159898	ENSGT00940000160767	ENSGT00940000156186	ENSGT00960000189336
Golden eagle	MODERN SPECIES	22	MREG (ENSACCG00020014972)	ENSACCG00020015012 #8	ENSACCG00020015079 #8	ATIC (ENSACCG00020015119) #9	ABCA12 (ENSACCG00020015186) #11	BARD1 (ENSACCG00020015244) #12	VWC2L (ENSACCG00020015266) #13	SPAG16 (ENSACCG00020015279) #14	IKZF2 (ENSACCG00020015298) #16	ERBB4 (ENSACCG00020015334) #17	CPS1 (ENSACCG00020015419) #18	ENSACCG00020015465	LANCL1 (ENSACCG00020015474) #19	MYL1 (ENSACCG00020015555) #20	ACADL (ENSACCG00020015590) #21	KANSL1L (ENSACCG00020015606) #22	ENSACCG00020015621 #23	UNC80 (ENSACCG00020015792) #24	MAP2 (ENSACCG00020015943) #26	FRZB (ENSACCG00020015976)	NCKAP1 (ENSACCG00020016001)	DUSP19 (ENSACCG00020016037)	ENSACCG00020016041	NUP35 (ENSACCG00020016049)	ZNF804A (ENSACCG00020016060)	ZC3H15 (ENSACCG00020016072)	ITGAV (ENSACCG00020016088)	FAM171B (ENSACCG00020016109)	CALCRL (ENSACCG00020016123)	TFPI (ENSACCG00020000338)	GULP1 (ENSACCG00020000420)
Kakapo	MODERN SPECIES	22	HDAC4 (ENSSHBG00005021230)	NDUFA10 (ENSSHBG00005021204)	ENSSHBG00005021203	ENSSHBG00005021200	ENSSHBG00005021199	SLC19A1 (ENSSHBG00005021198)	ENSSHBG00005021197	ENSSHBG00005021194	COL6A2 (ENSSHBG00005021193)	ENSSHBG00005021192	ERBB4 (ENSSHBG00005021191) #17	CPS1 (ENSSHBG00005021188) #18	LANCL1 (ENSSHBG00005021187) #19	MYL1 (ENSSHBG00005021186) #20	ACADL (ENSSHBG00005021185) #21	KANSL1L (ENSSHBG00005021184) #22	ENSSHBG00005021183 #23	UNC80 (ENSSHBG00005021181) #24	MAP2 (ENSSHBG00005021179) #26	FTCD (ENSSHBG00005021178)	ENSSHBG00005021177	MCM3AP (ENSSHBG00005021176)	YBEY (ENSSHBG00005021175)	POFUT2 (ENSSHBG00005021174)	ENSSHBG00005021173	ENSSHBG00005021172	SLX9 (ENSSHBG00005021171)	ITGB2 (ENSSHBG00005021170)	KMO (ENSSHBG00005021169)	DIP2A (ENSSHBG00005020890)	ENSSHBG00005020403
Passeriformes	ANCESTRAL SPECIES	6	ENSGT00940000163794	ENSGT00390000008926	ENSGT00940000155126 #8	ENSGT00390000004553 #9	ENSGT00940000157295 #11	ENSGT00940000156532 #12	ENSGT00720000108792.B #13	ENSGT00940000155053 #14	ENSGT00940000157137 #16	ENSGT00940000154695 #17	ENSGT00940000157192 #18	ENSGT00960000189051	ENSGT00530000063186.b.b #19	ENSGT01030000234570.d.a #20	ENSGT00940000157652 #21	ENSGT00530000063688.a #22	ENSGT00390000001447 #23	ENSGT00640000091496 #24	ENSGT00940000156597.b #26	ENSGT00940000160494	ENSGT00390000016619.a	ENSGT00940000156472	ENSGT00390000005923	ENSGT00390000011570	ENSGT00940000161997.a	ENSGT00950000182997.a.b.b.a	ENSGT00730000110871.a.a.a.b	ENSGT00390000011514	ENSGT00390000000747	ENSGT01090000259987.a.a.a	ENSGT00390000015709
Passeriformes_d	ANCESTRAL SPECIES	8	ENSGT00940000163794	ENSGT00390000008926	ENSGT00940000155126 #8	ENSGT00390000004553 #9	ENSGT00940000157295 #11	ENSGT00940000156532 #12	ENSGT00720000108792.B #13	ENSGT00940000155053 #14	ENSGT00940000157137 #16	ENSGT00940000154695 #17	ENSGT00940000157192 #18	ENSGT00960000189051	ENSGT00530000063186.b.b #19	ENSGT01030000234570.d.a #20	ENSGT00940000157652 #21	ENSGT00530000063688.a #22	ENSGT00390000001447 #23	ENSGT00640000091496 #24	ENSGT00940000156597.b #26	ENSGT00940000160494	ENSGT00390000016619.a	ENSGT00940000156472	ENSGT00390000005923	ENSGT00940000160596.a.a.a.a.a	ENSGT00390000011570	ENSGT00940000161997.a	ENSGT00950000182997.a.b.b.a	ENSGT00730000110871.a.a.a.b	ENSGT00390000011514	ENSGT00390000000747	ENSGT01090000259987.a.a.a
Passeriformes_g	ANCESTRAL SPECIES	9	ENSGT00940000163794	ENSGT00390000008926	ENSGT00940000155126 #8	ENSGT00390000004553 #9	ENSGT00940000157295 #11	ENSGT00940000156532 #12	ENSGT00720000108792.B #13	ENSGT00940000155053 #14	ENSGT00940000157137 #16	ENSGT00940000154695 #17	ENSGT00940000157192 #18	ENSGT00960000189051	ENSGT00530000063186.b.b #19	ENSGT01030000234570.d.a #20	ENSGT00940000157652 #21	ENSGT00530000063688.a #22	ENSGT00390000001447 #23	ENSGT00640000091496 #24	ENSGT00940000156597.b #26	ENSGT00940000160494	ENSGT00390000016619.a	ENSGT00940000156472	ENSGT00390000005923	ENSGT00940000160596.a.a.a.a.a	ENSGT00390000011570	ENSGT00940000161997.a	ENSGT00950000182997.a.b.b.a	ENSGT00730000110871.a.a.a.b	ENSGT00390000011514	ENSGT00390000000747	ENSGT01090000259987.a.a.a
Medium ground finch	MODERN SPECIES	166								IKZF2 (ENSGFOG00000013051) #16	ENSGFOG00000013049	ERBB4 (ENSGFOG00000012241) #17	CPS1 (ENSGFOG00000011253) #18	ENSGFOG00000011249	LANCL1 (ENSGFOG00000011247) #19	MYL1 (ENSGFOG00000011240) #20	ACADL (ENSGFOG00000011237) #21	KANSL1L (ENSGFOG00000011231) #22	ENSGFOG00000011229 #23
Passeroidea	ANCESTRAL SPECIES	8	ENSGT00940000163794	ENSGT00390000008926	ENSGT00940000155126 #8	ENSGT00390000004553 #9	ENSGT00940000157295 #11	ENSGT00940000156532 #12	ENSGT00720000108792.B #13	ENSGT00940000155053 #14	ENSGT00940000157137 #16	ENSGT00940000154695 #17	ENSGT00940000157192 #18	ENSGT00960000189051	ENSGT00530000063186.b.b #19	ENSGT01030000234570.d.a #20	ENSGT00940000157652 #21	ENSGT00530000063688.a #22	ENSGT00390000001447 #23	ENSGT00640000091496 #24	ENSGT00940000156597.b #26	ENSGT00940000160494	ENSGT00390000016619.a	ENSGT00940000156472	ENSGT00390000005923	ENSGT00940000160596.a.a.a.a.a	ENSGT00390000011570	ENSGT00940000161997.a	ENSGT00950000182997.a.b.b.a	ENSGT00730000110871.a.a.a.b	ENSGT00390000011514	ENSGT00390000000747	ENSGT01090000259987.a.a.a
Zebra finch	MODERN SPECIES	29	DBI (ENSTGUG00000026977)	TMEM37 (ENSTGUG00000029671)	SCTR (ENSTGUG00000011525)	CFAP221 (ENSTGUG00000011524)	ESYT3 (ENSTGUG00000011515)	ENSTGUG00000011506	ENSTGUG00000022865	ENSTGUG00000020167	ENSTGUG00000019535	ERBB4 (ENSTGUG00000011479) #17	ENSTGUG00000028760	CPS1 (ENSTGUG00000011444) #18	LANCL1 (ENSTGUG00000011434) #19	MYL1 (ENSTGUG00000011416) #20	ACADL (ENSTGUG00000011392) #21	KANSL1L (ENSTGUG00000011385) #22	ENSTGUG00000011373 #23	UNC80 (ENSTGUG00000011342) #24	MAP2 (ENSTGUG00000011322) #26	FRZB (ENSTGUG00000011320)	NCKAP1 (ENSTGUG00000011303)	DUSP19 (ENSTGUG00000011298)	NUP35 (ENSTGUG00000011278)	ENSTGUG00000024434	LSS (ENSTGUG00000011260)	DIP2A (ENSTGUG00000011224)	PCNT (ENSTGUG00000028465)	C21orf58 (ENSTGUG00000011218)	KMO (ENSTGUG00000011204)	ITGB2 (ENSTGUG00000011172)	ENSTGUG00000011170
Common canary	MODERN SPECIES	8	MREG (ENSSCAG00000008744)	FN1 (ENSSCAG00000005638) #8	ATIC (ENSSCAG00000004622) #9	ABCA12 (ENSSCAG00000004519) #11	BARD1 (ENSSCAG00000004510) #12	VWC2L (ENSSCAG00000004500) #13	ENSSCAG00000004494 #14	ENSSCAG00000004487 #14	IKZF2 (ENSSCAG00000004479) #16	ERBB4 (ENSSCAG00000004444) #17	CPS1 (ENSSCAG00000004414) #18	ENSSCAG00000004409	LANCL1 (ENSSCAG00000004404) #19	MYL1 (ENSSCAG00000004398) #20	ACADL (ENSSCAG00000004392) #21	KANSL1L (ENSSCAG00000004376) #22	ENSSCAG00000004371 #23	UNC80 (ENSSCAG00000004263) #24	ENSSCAG00000004229 ##26	ENSSCAG00000004208 #26	NCKAP1 (ENSSCAG00000004188)	DUSP19 (ENSSCAG00000004181)	NUP35 (ENSSCAG00000004179)	LSS (ENSSCAG00000004170)	S100B (ENSSCAG00000004165)	DIP2A (ENSSCAG00000004156)	PCNT (ENSSCAG00000004141)	KMO (ENSSCAG00000004131)	ITGB2 (ENSSCAG00000004125)	ENSSCAG00000004115	ADARB1 (ENSSCAG00000004097)
Flycatcher	MODERN SPECIES	26	ENSFALG00000012826	MREG (ENSFALG00000012834)	FN1 (ENSFALG00000012845) #8	ATIC (ENSFALG00000012874) #9	ABCA12 (ENSFALG00000012901) #11	BARD1 (ENSFALG00000012920) #12	VWC2L (ENSFALG00000012931) #13	SPAG16 (ENSFALG00000012936) #14	IKZF2 (ENSFALG00000012948) #16	ERBB4 (ENSFALG00000012969) #17	CPS1 (ENSFALG00000013028) #18	ENSFALG00000027439	LANCL1 (ENSFALG00000013076) #19	MYL1 (ENSFALG00000013083) #20	ACADL (ENSFALG00000013095) #21	KANSL1L (ENSFALG00000013107) #22	ENSFALG00000013112 #23	UNC80 (ENSFALG00000013122) #24	MAP2 (ENSFALG00000024297) #26	FRZB (ENSFALG00000013151)	NCKAP1 (ENSFALG00000013164)	DUSP19 (ENSFALG00000026219)	NUP35 (ENSFALG00000013175)	ENSFALG00000013178	ENSFALG00000013215	S100B (ENSFALG00000024643)	DIP2A (ENSFALG00000013301)	PCNT (ENSFALG00000013314)	C21orf58 (ENSFALG00000013322)	ENSFALG00000013328	ITGB2 (ENSFALG00000013331)
Great tit	MODERN SPECIES	27	MREG (ENSPMJG00000006864)	FN1 (ENSPMJG00000006873) #8	ATIC (ENSPMJG00000006902) #9	ENSPMJG00000006908	ABCA12 (ENSPMJG00000006911) #11	BARD1 (ENSPMJG00000006924) #12	VWC2L (ENSPMJG00000006927) #13	SPAG16 (ENSPMJG00000006964) #14	IKZF2 (ENSPMJG00000006973) #16	ENSPMJG00000006993	ERBB4 (ENSPMJG00000007008) #17	CPS1 (ENSPMJG00000007044) #18	LANCL1 (ENSPMJG00000007791) #19	MYL1 (ENSPMJG00000007793) #20	ACADL (ENSPMJG00000007795) #21	KANSL1L (ENSPMJG00000007796) #22	ENSPMJG00000007800 #23	UNC80 (ENSPMJG00000007818) #24	MAP2 (ENSPMJG00000007838) #26	FRZB (ENSPMJG00000007853)	NCKAP1 (ENSPMJG00000007857)	DUSP19 (ENSPMJG00000007859)	NUP35 (ENSPMJG00000007860)	LSS (ENSPMJG00000007863)	DIP2A (ENSPMJG00000007969)	PCNT (ENSPMJG00000008007)	C21orf58 (ENSPMJG00000008021)	KMO (ENSPMJG00000008027)	ENSPMJG00000008038	ITGB2 (ENSPMJG00000008041)	SLX9 (ENSPMJG00000008046)
Galloanserae	ANCESTRAL SPECIES	7	ENSGT00940000163794	ENSGT00390000008926	ENSGT00940000155126 #8	ENSGT00390000004553 #9	ENSGT00940000157295 #11	ENSGT00940000156532 #12	ENSGT00720000108792.B #13	ENSGT00940000155053 #14	ENSGT00940000157137 #16	ENSGT00940000154695 #17	ENSGT00940000157192 #18	ENSGT00960000189051	ENSGT00530000063186.b.b #19	ENSGT01030000234570.d.a #20	ENSGT00940000157652 #21	ENSGT00530000063688.a #22	ENSGT00390000001447 #23	ENSGT00640000091496 #24	ENSGT00940000156597.b #26	ENSGT00940000160494	ENSGT00390000016619.a	ENSGT00940000156472	ENSGT00390000005923	ENSGT00940000160909	ENSGT00390000015818	ENSGT00940000158361	ENSGT00950000183184.a.a	ENSGT00390000006826	ENSGT00940000159898	ENSGT00940000160767	ENSGT00940000156186
Anatidae	ANCESTRAL SPECIES	10	ENSGT00940000163794	ENSGT00390000008926	ENSGT00940000155126 #8	ENSGT00390000004553 #9	ENSGT00940000157295 #11	ENSGT00940000156532 #12	ENSGT00720000108792.B #13	ENSGT00940000155053 #14	ENSGT00940000157137 #16	ENSGT00940000154695 #17	ENSGT00940000157192 #18	ENSGT00960000189051	ENSGT00530000063186.b.b #19	ENSGT01030000234570.d.a #20	ENSGT00940000157652 #21	ENSGT00530000063688.a #22	ENSGT00390000001447 #23	ENSGT00640000091496 #24	ENSGT00940000156597.b #26	ENSGT00940000160494	ENSGT00390000016619.a	ENSGT00940000156472	ENSGT00390000005923	ENSGT00940000160909	ENSGT00390000015818	ENSGT00940000158361	ENSGT00950000183184.a.a	ENSGT00390000006826	ENSGT00940000159898	ENSGT00940000160767	ENSGT00940000156186
Pink-footed goose	MODERN SPECIES	18	UBE2F (ENSABRG00000022177)	ENSABRG00000022171	MREG (ENSABRG00000022165)	FN1 (ENSABRG00000021857) #8	ATIC (ENSABRG00000021637) #9	ABCA12 (ENSABRG00000021521) #11	BARD1 (ENSABRG00000021511) #12	VWC2L (ENSABRG00000021509) #13	SPAG16 (ENSABRG00000021506) #14	IKZF2 (ENSABRG00000021503) #16	ERBB4 (ENSABRG00000020899) #17	CPS1 (ENSABRG00000020606) #18	LANCL1 (ENSABRG00000020550) #19	MYL1 (ENSABRG00000020537) #20	ACADL (ENSABRG00000020530) #21	KANSL1L (ENSABRG00000020507) #22	ENSABRG00000020485 #23	UNC80 (ENSABRG00000020422) #24	MAP2 (ENSABRG00000020231) #26	FRZB (ENSABRG00000020214)	NCKAP1 (ENSABRG00000020208)	DUSP19 (ENSABRG00000020205)	NUP35 (ENSABRG00000020199)	ZNF804A (ENSABRG00000020188)	ZC3H15 (ENSABRG00000020121)	ITGAV (ENSABRG00000019432)	FAM171B (ENSABRG00000019362)	CALCRL (ENSABRG00000019338)	TFPI (ENSABRG00000019310)	GULP1 (ENSABRG00000019292)	ENSABRG00000019281
Duck	MODERN SPECIES	25	MREG (ENSAPLG00000012631)	FN1 (ENSAPLG00000012652) #8	ATIC (ENSAPLG00000014306) #9	ABCA12 (ENSAPLG00000014859) #11	BARD1 (ENSAPLG00000015564) #12	VWC2L (ENSAPLG00000015890) #13	SPAG16 (ENSAPLG00000015934) #14	IKZF2 (ENSAPLG00000001291) #16	ERBB4 (ENSAPLG00000001331) #17	ENSAPLG00000026809	CPS1 (ENSAPLG00000002474) #18	ENSAPLG00000022497	LANCL1 (ENSAPLG00000004144) #19	MYL1 (ENSAPLG00000004615) #20	ACADL (ENSAPLG00000004832) #21	KANSL1L (ENSAPLG00000005351) #22	ENSAPLG00000005752 #23	UNC80 (ENSAPLG00000005783) #24	MAP2 (ENSAPLG00000022767) #26	NCKAP1 (ENSAPLG00000008045)	DUSP19 (ENSAPLG00000009154)	NUP35 (ENSAPLG00000009161)	ZNF804A (ENSAPLG00000026720)	ZC3H15 (ENSAPLG00000005971)	ITGAV (ENSAPLG00000006402)	FAM171B (ENSAPLG00000004087)	ZSWIM2 (ENSAPLG00000023653)	CALCRL (ENSAPLG00000003509)	TFPI (ENSAPLG00000003445)	GULP1 (ENSAPLG00000016317)	ENSAPLG00000001050
Phasianidae	ANCESTRAL SPECIES	8	ENSGT00940000163794	ENSGT00390000008926	ENSGT00940000155126 #8	ENSGT00390000004553 #9	ENSGT00940000157295 #11	ENSGT00940000156532 #12	ENSGT00720000108792.B #13	ENSGT00940000155053 #14	ENSGT00940000157137 #16	ENSGT00940000154695 #17	ENSGT00940000157192 #18	ENSGT00960000189051	ENSGT00530000063186.b.b #19	ENSGT01030000234570.d.a.l #20	ENSGT00940000157652 #21	ENSGT00530000063688.a #22	ENSGT00390000001447 #23	ENSGT00640000091496 #24	ENSGT00940000156597.b #26	ENSGT00940000160494	ENSGT00390000016619.a	ENSGT00940000156472	ENSGT00390000005923	ENSGT00940000160909	ENSGT00390000015818	ENSGT00940000158361	ENSGT00950000183184.a.a	ENSGT00940000159898	ENSGT00940000160767	ENSGT00940000156186	ENSGT00960000189336
Phasianidae_b	ANCESTRAL SPECIES	8	ENSGT00390000008926	ENSGT00940000155126 #8	ENSGT00390000004553 #9	ENSGT00940000157295 #11	ENSGT00940000156532 #12	ENSGT00720000108792.B #13	ENSGT00940000157452.s.a.c.a.b	ENSGT00940000155053 #14	ENSGT00940000157137 #16	ENSGT00940000154695 #17	ENSGT00940000157192 #18	ENSGT00960000189051	ENSGT00530000063186.b.b #19	ENSGT01030000234570.d.a.l #20	ENSGT00940000157652 #21	ENSGT00530000063688.a #22	ENSGT00390000001447 #23	ENSGT00640000091496 #24	ENSGT00940000156597.b #26	ENSGT00940000160494	ENSGT00390000016619.a	ENSGT00940000156472	ENSGT00390000005923	ENSGT00940000160909	ENSGT00390000015818	ENSGT00940000158361	ENSGT00950000183184.a.a	ENSGT00940000159898	ENSGT00940000160767	ENSGT00940000156186	ENSGT00960000189336
Turkey	MODERN SPECIES	27	FN1 (ENSMGAG00000003306) #8	ATIC (ENSMGAG00000003456) #9	ABCA12 (ENSMGAG00000003510) #11	BARD1 (ENSMGAG00000003641) #12	VWC2L (ENSMGAG00000003667) #13	ENSMGAG00000003687 #14	ENSMGAG00000003672	ENSMGAG00000022263 #14	ENSMGAG00000003697 #16	ERBB4 (ENSMGAG00000003739) #17	CPS1 (ENSMGAG00000003847) #18	ENSMGAG00000019418	LANCL1 (ENSMGAG00000004068) #19	MYL1 (ENSMGAG00000004000) #20	ACADL (ENSMGAG00000004045) #21	KANSL1L (ENSMGAG00000004128) #22	ENSMGAG00000020115 #23	UNC80 (ENSMGAG00000004158) #24	ENSMGAG00000004244 #26	ENSMGAG00000022329 ##26	FRZB (ENSMGAG00000004300)	NCKAP1 (ENSMGAG00000004331)	DUSP19 (ENSMGAG00000018282)	NUP35 (ENSMGAG00000004412)	ZNF804A (ENSMGAG00000004439)	ENSMGAG00000020780	ZC3H15 (ENSMGAG00000004447)	ITGAV (ENSMGAG00000004461)	FAM171B (ENSMGAG00000004572)	CALCRL (ENSMGAG00000004601)	TFPI (ENSMGAG00000004644)
Chicken	MODERN SPECIES	36	ENSGALG00010012015	MREG (ENSGALG00010012007)	FN1 (ENSGALG00010011984) #8	ATIC (ENSGALG00010011965) #9	ABCA12 (ENSGALG00010011949) #11	BARD1 (ENSGALG00010011923) #12	VWC2L (ENSGALG00010011894) #13	ENSGALG00010015237	SPAG16 (ENSGALG00010011850) #14	IKZF2 (ENSGALG00010011720) #16	ERBB4 (ENSGALG00010011625) #17	LANCL1 (ENSGALG00010011539) #19	MYL1 (ENSGALG00010011505) #20	CPS1 (ENSGALG00010011469) #18	ACADL (ENSGALG00010011424) #21	KANSL1L (ENSGALG00010011412) #22	ENSGALG00010011374 #23	UNC80 (ENSGALG00010011357) #24	MAP2 (ENSGALG00010011321) #26	FRZB (ENSGALG00010011251)	NCKAP1 (ENSGALG00010011212)	DUSP19 (ENSGALG00010011142)	NUP35 (ENSGALG00010011121)	ZNF804A (ENSGALG00010013423)	ZC3H15 (ENSGALG00010013407)	ITGAV (ENSGALG00010013386)	FAM171B (ENSGALG00010013355)	CALCRL (ENSGALG00010013320)	TFPI (ENSGALG00010013303)	GULP1 (ENSGALG00010013271)	COL3A1 (ENSGALG00010013170)
Japanese quail	MODERN SPECIES	25	ENSCJPG00005014041	ENSCJPG00005014038	MREG (ENSCJPG00005014036)	FN1 (ENSCJPG00005014024) #8	ATIC (ENSCJPG00005014023) #9	ABCA12 (ENSCJPG00005014021) #11	BARD1 (ENSCJPG00005014019) #12	VWC2L (ENSCJPG00005014018) #13	SPAG16 (ENSCJPG00005014016) #14	IKZF2 (ENSCJPG00005014015) #16	ERBB4 (ENSCJPG00005014005) #17	CPS1 (ENSCJPG00005013844) #18	LANCL1 (ENSCJPG00005013843) #19	MYL1 (ENSCJPG00005013841) #20	ACADL (ENSCJPG00005013840) #21	KANSL1L (ENSCJPG00005013839) #22	ENSCJPG00005013838 #23	UNC80 (ENSCJPG00005013837) #24	ENSCJPG00005013836 #26	FRZB (ENSCJPG00005013834)	NCKAP1 (ENSCJPG00005013833)	DUSP19 (ENSCJPG00005013832)	NUP35 (ENSCJPG00005013831)	ZNF804A (ENSCJPG00005013830)	ZC3H15 (ENSCJPG00005013826)	ITGAV (ENSCJPG00005013824)	FAM171B (ENSCJPG00005013823)	CALCRL (ENSCJPG00005013822)	TFPI (ENSCJPG00005013821)	ENSCJPG00005013820	GULP1 (ENSCJPG00005013819)
African ostrich	MODERN SPECIES	1071						ABCA12 (ENSSCUG00000013363) #11	BARD1 (ENSSCUG00000013356) #12	VWC2L (ENSSCUG00000013355) #13	SPAG16 (ENSSCUG00000013354) #14	IKZF2 (ENSSCUG00000013350) #16	ERBB4 (ENSSCUG00000013317) #17	CPS1 (ENSSCUG00000013255) #18	LANCL1 (ENSSCUG00000013218) #19	MYL1 (ENSSCUG00000013213) #20	ACADL (ENSSCUG00000013211) #21	KANSL1L (ENSSCUG00000013205) #22	ENSSCUG00000013202 #23	UNC80 (ENSSCUG00000013197) #24	MAP2 (ENSSCUG00000013191) #26	PTH2R (ENSSCUG00000013187) #30	PIKFYVE (ENSSCUG00000013177) #31	IDH1 (ENSSCUG00000013175) #32	ENSSCUG00000013173	C2orf80 (ENSSCUG00000013171) #33	ENSSCUG00000013166 #35	ENSSCUG00000013162	NBEAL1 (ENSSCUG00000013063)	ABI2 (ENSSCUG00000013010)	RAPH1 (ENSSCUG00000013003)	CD28 (ENSSCUG00000012996)	CTLA4 (ENSSCUG00000012995)
Australian saltwater crocodile	MODERN SPECIES	66	MREG (ENSCPRG00005005306)	FN1 (ENSCPRG00005003637) #8	ATIC (ENSCPRG00005003393) #9	ABCA12 (ENSCPRG00005003342) #11	BARD1 (ENSCPRG00005003336) #12	VWC2L (ENSCPRG00005003332) #13	ENSCPRG00005003324	ENSCPRG00005003312 #14	ENSCPRG00005003294	IKZF2 (ENSCPRG00005003290) #16	ERBB4 (ENSCPRG00005003197) #17	CPS1 (ENSCPRG00005002612) #18	LANCL1 (ENSCPRG00005002510) #19	MYL1 (ENSCPRG00005002506) #20	ACADL (ENSCPRG00005002494) #21	KANSL1L (ENSCPRG00005002482) #22	ENSCPRG00005002478 #23	ENSCPRG00005002476	UNC80 (ENSCPRG00005002350) #24	ENSCPRG00005002217 #26	PIKFYVE (ENSCPRG00005002112) #31	IDH1 (ENSCPRG00005002078) #32	ENSCPRG00005002066	C2orf80 (ENSCPRG00005002051) #33	ENSCPRG00005002039	CRYGA (ENSCPRG00005002034)	ENSCPRG00005002022	ENSCPRG00005002018	PLEKHM3 (ENSCPRG00005002005)	ENSCPRG00005002000	ENSCPRG00005001990
Cryptodira	ANCESTRAL SPECIES	5	ENSGT00940000163794	ENSGT00390000008926	ENSGT00940000155126 #8	ENSGT00390000004553 #9	ENSGT00940000157295 #11	ENSGT00940000156532 #12	ENSGT00720000108792.B #13	ENSGT00940000155053 #14	ENSGT00940000157137 #16	ENSGT00940000154695 #17	ENSGT00940000157192 #18	ENSGT00960000189051	ENSGT00530000063186.b.b #19	ENSGT01030000234570.d.a #20	ENSGT00940000157652 #21	ENSGT00530000063688.a #22	ENSGT00390000001447 #23	ENSGT00640000091496 #24	ENSGT00940000156597.b #26	ENSGT00940000159094 #30	ENSGT00940000156307.b #31	ENSGT00390000012547.b #32	ENSGT00390000004840 #33	ENSGT00940000156190	ENSGT00940000159232 #35	ENSGT00940000163494.a.b.g.b	ENSGT00940000159743	ENSGT00940000161191.B	ENSGT00940000154453.b	ENSGT00940000157249	ENSGT00940000155408
Testudinoidea	ANCESTRAL SPECIES	11	ENSGT00940000163794	ENSGT00390000008926	ENSGT00940000155126 #8	ENSGT00390000004553 #9	ENSGT00940000157295 #11	ENSGT00940000156532 #12	ENSGT00720000108792.B #13	ENSGT00940000155053 #14	ENSGT00940000157137 #16	ENSGT00940000154695 #17	ENSGT00940000157192 #18	ENSGT00960000189051	ENSGT00530000063186.b.b #19	ENSGT01030000234570.d.a #20	ENSGT00940000157652 #21	ENSGT00530000063688.a #22	ENSGT00390000001447 #23	ENSGT00640000091496 #24	ENSGT00940000156597.b #26	ENSGT00940000159094 #30	ENSGT00940000156307.b #31	ENSGT00390000012547.b #32	ENSGT00940000154107.b	ENSGT00390000004840 #33	ENSGT00940000163494.a.b.g.a	ENSGT00940000163322.a.b	ENSGT00940000156190	ENSGT00940000159232 #35	ENSGT00940000163494.a.b.g.b	ENSGT00940000159743	ENSGT00940000161191.B
Emydidae	ANCESTRAL SPECIES	4	ENSGT00390000014310.a	ENSGT00940000163794	ENSGT00390000008926	ENSGT00940000155126 #8	ENSGT00390000004553 #9	ENSGT00940000157295 #11	ENSGT00940000156532 #12	ENSGT00720000108792.B #13	ENSGT00940000155053 #14	ENSGT00940000157137 #16	ENSGT00940000154695 #17	ENSGT00940000157192 #18	ENSGT00530000063186.b.b #19	ENSGT01030000234570.d.a #20	ENSGT00940000157652 #21	ENSGT00530000063688.a #22	ENSGT00390000001447 #23	ENSGT00640000091496 #24	ENSGT00940000156597.b #26	ENSGT00940000159094 #30	ENSGT00940000156307.b #31	ENSGT00390000012547.b #32	ENSGT00940000154107.b	ENSGT00390000004840 #33	ENSGT00940000156190.c.a	ENSGT00940000159232 #35	ENSGT00940000163494.a.b.g.b	ENSGT00940000159743	ENSGT00940000161191.B	ENSGT00940000154453.b	ENSGT00940000157249
Three-toed box turtle	MODERN SPECIES	25		MREG (ENSTMTG00000003191)	FN1 (ENSTMTG00000003016) #8	ATIC (ENSTMTG00000002987) #9	ABCA12 (ENSTMTG00000002947) #11	BARD1 (ENSTMTG00000002934) #12	VWC2L (ENSTMTG00000002929) #13	ENSTMTG00000002921 #14	ENSTMTG00000002912 #14	IKZF2 (ENSTMTG00000002878) #16	ERBB4 (ENSTMTG00000002803) #17	CPS1 (ENSTMTG00000002766) #18	LANCL1 (ENSTMTG00000002758) #19	MYL1 (ENSTMTG00000002746) #20	ACADL (ENSTMTG00000002733) #21	KANSL1L (ENSTMTG00000002723) #22	ENSTMTG00000002718 #23	UNC80 (ENSTMTG00000002568) #24	ENSTMTG00000002484 #26	PTH2R (ENSTMTG00000002463) #30	PIKFYVE (ENSTMTG00000001522) #31	IDH1 (ENSTMTG00000001317) #32	C2orf80 (ENSTMTG00000001308) #33	ENSTMTG00000001300	ENSTMTG00000001290	ENSTMTG00000001279	ENSTMTG00000001256 #37	ENSTMTG00000001219	PLEKHM3 (ENSTMTG00000001191)	ENSTMTG00000001184	ENSTMTG00000001162
painted turtle	MODERN SPECIES	809									SPAG16 (ENSCPBG00000025370) #14	IKZF2 (ENSCPBG00000025371) #16	ERBB4 (ENSCPBG00000025372) #17	CPS1 (ENSCPBG00000025379) #18	LANCL1 (ENSCPBG00000025467) #19	MYL1 (ENSCPBG00000025476) #20	ACADL (ENSCPBG00000025491) #21	KANSL1L (ENSCPBG00000025529) #22	ENSCPBG00000025584 #23	UNC80 (ENSCPBG00000025696) #24	MAP2 (ENSCPBG00000025974) #26
Testudinidae	ANCESTRAL SPECIES	8	ENSGT00940000163794.cb	ENSGT00390000008926	ENSGT00940000155126 #8	ENSGT00390000004553 #9	ENSGT00940000157295 #11	ENSGT00940000156532 #12	ENSGT00720000108792.B #13	ENSGT00940000155053 #14	ENSGT00940000157137 #16	ENSGT00940000154695 #17	ENSGT00940000157192 #18	ENSGT00960000189051	ENSGT00530000063186.b.b #19	ENSGT01030000234570.d.a #20	ENSGT00940000157652 #21	ENSGT00530000063688.a #22	ENSGT00390000001447 #23	ENSGT00640000091496 #24	ENSGT00940000156597.b #26	ENSGT00940000159094 #30	ENSGT00940000156307.b #31	ENSGT00390000012547.b #32	ENSGT00940000154107.b	ENSGT00390000004840 #33	ENSGT00940000163322.a.b.f	ENSGT00940000163494.a.b.g.a	ENSGT00940000163322.a.b.e	ENSGT00940000156190	ENSGT00960000190368	ENSGT00940000163494.a.b.g.b	ENSGT00940000159743
Abingdon island giant tortoise	MODERN SPECIES	2493												CPS1 (ENSCABG00000020978) #18	LANCL1 (ENSCABG00000021026) #19	MYL1 (ENSCABG00000021030) #20	ACADL (ENSCABG00000021048) #21	KANSL1L (ENSCABG00000021161) #22	ENSCABG00000021164 #23	UNC80 (ENSCABG00000021168) #24	ENSCABG00000021179 #26	PTH2R (ENSCABG00000021190) #30	PIKFYVE (ENSCABG00000021210) #31	IDH1 (ENSCABG00000021521) #32	ENSCABG00000021522	C2orf80 (ENSCABG00000021523) #33	ENSCABG00000021525	ENSCABG00000021527	ENSCABG00000021528	CRYGD (ENSCABG00000021530) #34	ENSCABG00000021532	ENSCABG00000021534	ENSCABG00000021536
Goode s thornscrub tortoise	MODERN SPECIES	2	ENSGEVG00005013700 #8	ENSGEVG00005013790 #8	ATIC (ENSGEVG00005013845) #9	ABCA12 (ENSGEVG00005013908) #11	BARD1 (ENSGEVG00005014357) #12	VWC2L (ENSGEVG00005014438) #13	ENSGEVG00005014460 #14	ENSGEVG00005014540 #14	IKZF2 (ENSGEVG00005014648) #16	ERBB4 (ENSGEVG00005015015) #17	CPS1 (ENSGEVG00005015920) #18	ENSGEVG00005016107	LANCL1 (ENSGEVG00005016202) #19	MYL1 (ENSGEVG00005016236) #20	ACADL (ENSGEVG00005016296) #21	KANSL1L (ENSGEVG00005016332) #22	ENSGEVG00005016355 #23	UNC80 (ENSGEVG00005004294) #24	ENSGEVG00005004848 #26	PTH2R (ENSGEVG00005005111) #30	IDH1 (ENSGEVG00005005468) #32	C2orf80 (ENSGEVG00005005500) #33	ENSGEVG00005005557	ENSGEVG00005005635	ENSGEVG00005005668	CRYGA (ENSGEVG00005005709)	ENSGEVG00005005746	ENSGEVG00005005756	PLEKHM3 (ENSGEVG00005005792)	ENSGEVG00005005818	ENSGEVG00005005842
Chinese turtle	MODERN SPECIES	1375	FN1 (ENSPSIG00000015987) #8	ATIC (ENSPSIG00000015711) #9	ABCA12 (ENSPSIG00000015309) #11	BARD1 (ENSPSIG00000015299) #12	VWC2L (ENSPSIG00000015244) #13	ENSPSIG00000015060 #14	ENSPSIG00000001304	ENSPSIG00000015030 #14	IKZF2 (ENSPSIG00000014940) #16	ERBB4 (ENSPSIG00000013711) #17	ENSPSIG00000013508 #18	ENSPSIG00000013503 #18	LANCL1 (ENSPSIG00000013378) #19	MYL1 (ENSPSIG00000013292) #20	ACADL (ENSPSIG00000012661) #21	KANSL1L (ENSPSIG00000012588) #22	ENSPSIG00000012534 #23	UNC80 (ENSPSIG00000010780) #24	MAP2 (ENSPSIG00000010770) #26
Lepidosauria	ANCESTRAL SPECIES	7	ENSGT00940000163794	ENSGT00390000008926	ENSGT00940000155126 #8	ENSGT00390000004553 #9	ENSGT00940000157295 #11	ENSGT00940000156532 #12	ENSGT00720000108792.B #13	ENSGT00940000155053 #14	ENSGT00940000157137 #16	ENSGT00940000154695 #17	ENSGT00940000157192 #18	ENSGT00990000210950	ENSGT00530000063186.b.b #19	ENSGT01030000234570.d.a #20	ENSGT00940000157652 #21	ENSGT00530000063688.a #22	ENSGT00390000001447 #23	ENSGT00640000091496 #24	ENSGT00940000156597.b #26	ENSGT00940000159094 #30	ENSGT00940000156307.b #31	ENSGT00390000012547.b #32	ENSGT00940000159743	ENSGT00940000161191.B	ENSGT00940000154453.b	ENSGT00940000157249	ENSGT00940000155408	ENSGT00940000155235	ENSGT01030000234607.A.b	ENSGT00530000063410.b	ENSGT00940000162403
Episquamata	ANCESTRAL SPECIES		ENSGT00940000154349	ENSGT00390000008926	ENSGT00940000155126 #8	ENSGT00390000004553 #9	ENSGT00940000157295 #11	ENSGT00940000156532 #12	ENSGT00720000108792.B #13	ENSGT00940000155053 #14	ENSGT00940000157137 #16	ENSGT00940000154695 #17	ENSGT00940000157192 #18	ENSGT00990000210950	ENSGT00530000063186.b.b #19	ENSGT01030000234570.d.a #20	ENSGT00940000157652 #21	ENSGT00530000063688.a #22	ENSGT00390000001447 #23	ENSGT00640000091496 #24	ENSGT00940000156597.b #26	ENSGT00940000159094 #30	ENSGT00940000156307.b #31	ENSGT00390000012547.b #32	ENSGT00940000159743	ENSGT00940000161191.B	ENSGT00940000154453.b	ENSGT00940000157249	ENSGT00940000155408	ENSGT00940000155235	ENSGT01030000234607.A.b	ENSGT00530000063410.b	ENSGT00940000162403
Toxicofera	ANCESTRAL SPECIES		ENSGT00940000154349	ENSGT00390000008926	ENSGT00940000155126 #8	ENSGT00390000004553 #9	ENSGT00940000157295 #11	ENSGT00940000156532 #12	ENSGT00720000108792.B #13	ENSGT00940000155053 #14	ENSGT00940000157137 #16	ENSGT00940000154695 #17	ENSGT00940000157192 #18	ENSGT00990000210950	ENSGT00530000063186.b.b #19	ENSGT01030000234570.d.a #20	ENSGT00940000157652 #21	ENSGT00530000063688.a #22	ENSGT00390000001447 #23	ENSGT00640000091496 #24	ENSGT00940000156597.b #26	ENSGT00940000159094 #30	ENSGT00940000156307.b #31	ENSGT00390000012547.b #32	ENSGT00940000159743	ENSGT00940000161191.B	ENSGT00940000154453.b	ENSGT00940000157249	ENSGT00940000155408	ENSGT00940000155235	ENSGT01030000234607.A.b	ENSGT00530000063410.b	ENSGT00940000162403
Elapidae	ANCESTRAL SPECIES		ENSGT00940000154349	ENSGT00940000155126 #8	ENSGT00390000004553 #9	ENSGT00940000157295.g #11	ENSGT00940000156532.j #12	ENSGT00720000108792.B #13	ENSGT00940000155053 #14	ENSGT00940000157137.e #16	ENSGT00940000157137.f #16	ENSGT00940000154695 #17	ENSGT00940000157192 #18	ENSGT00990000210950	ENSGT00530000063186.b.b #19	ENSGT01030000234570.d.a #20	ENSGT00940000157652 #21	ENSGT00530000063688.a #22	ENSGT00390000001447 #23	ENSGT00640000091496 #24	ENSGT00940000156597.b #26	ENSGT00940000159094 #30	ENSGT00940000156307.b #31	ENSGT00390000012547.b #32	ENSGT00960000187202	ENSGT00940000159743	ENSGT00940000161191.B	ENSGT00940000154453.b	ENSGT00940000157249	ENSGT00940000155408	ENSGT00940000155235	ENSGT01030000234607.A.b	ENSGT00530000063410.b
Indian cobra	MODERN SPECIES		ENSNNAG00000003837 #11	ENSNNAG00000003847 #11	ENSNNAG00000003892 #11	BARD1 (ENSNNAG00000003981) #12	ENSNNAG00000004003 #14	ENSNNAG00000004042 #14	ENSNNAG00000004078	IKZF2 (ENSNNAG00000004094) #16	ENSNNAG00000004158	ERBB4 (ENSNNAG00000004204) #17	CPS1 (ENSNNAG00000004686) #18	ENSNNAG00000004905	LANCL1 (ENSNNAG00000004916) #19	MYL1 (ENSNNAG00000004947) #20	ACADL (ENSNNAG00000005029) #21	KANSL1L (ENSNNAG00000005103) #22	ENSNNAG00000005141 #23	UNC80 (ENSNNAG00000005183) #24	ENSNNAG00000005292 #26	PTH2R (ENSNNAG00000005410) #30	PIKFYVE (ENSNNAG00000005522) #31	IDH1 (ENSNNAG00000005790) #32	ENSNNAG00000005828	ENSNNAG00000005842	PLEKHM3 (ENSNNAG00000005905)	ENSNNAG00000005932	ENSNNAG00000005945	METTL21A (ENSNNAG00000005999)	CREB1 (ENSNNAG00000006029)	KLF7 (ENSNNAG00000006050)	FASTKD2 (ENSNNAG00000006083)
Elapidae_a	ANCESTRAL SPECIES	39	ENSGT00530000063564.b	ENSGT00940000154349	ENSGT00940000155126 #8	ENSGT00390000004553 #9	ENSGT00940000157295.g #11	ENSGT00940000156532.j #12	ENSGT00720000108792.B #13	ENSGT00940000155053 #14	ENSGT00940000157137.e #16	ENSGT00940000154695 #17	ENSGT00940000157192 #18	ENSGT00990000210950	ENSGT00530000063186.b.b #19	ENSGT01030000234570.d.a #20	ENSGT00940000157652 #21	ENSGT00530000063688.a #22	ENSGT00390000001447 #23	ENSGT00640000091496 #24	ENSGT00940000156597.b #26	ENSGT00940000159094 #30	ENSGT00940000156307.b.g #31	ENSGT00390000012547.b #32	ENSGT00960000187202	ENSGT00940000159743	ENSGT00940000161191.B	ENSGT00940000154453.b	ENSGT00940000157249	ENSGT00940000155408	ENSGT00940000155235	ENSGT01030000234607.A.b	ENSGT00530000063410.b
Blue-lipped sea krait	MODERN SPECIES	106														ACADL (ENSLLTG00000000117) #21	ENSLLTG00000000141 #23	KANSL1L (ENSLLTG00000000169) #22
Acanthophiinae	ANCESTRAL SPECIES	39	ENSGT00530000063564.b	ENSGT00940000154349	ENSGT00940000155126 #8	ENSGT00390000004553 #9	ENSGT00940000157295.g #11	ENSGT00940000156532.j #12	ENSGT00720000108792.B #13	ENSGT00940000155053 #14	ENSGT00940000157137.e #16	ENSGT00940000154695 #17	ENSGT00940000157192 #18	ENSGT00990000210950	ENSGT00530000063186.b.b #19	ENSGT01030000234570.d.a #20	ENSGT00940000157652 #21	ENSGT00530000063688.a #22	ENSGT00990000211987	ENSGT00390000001447 #23	ENSGT00640000091496 #24	ENSGT00940000156597.b #26	ENSGT00940000159094 #30	ENSGT00940000156307.b.g #31	ENSGT00390000012547.b #32	ENSGT00960000187202	ENSGT00940000159743	ENSGT00940000161191.B	ENSGT00940000154453.b	ENSGT00940000157249	ENSGT00940000155408	ENSGT00940000155235	ENSGT01030000234607.A.b
Mainland tiger snake	MODERN SPECIES	50	ENSNSUG00000004070 #8	ATIC (ENSNSUG00000004072) #9	ABCA12 (ENSNSUG00000004082) #11	ENSNSUG00000004101 #12	VWC2L (ENSNSUG00000004152) #13	ENSNSUG00000004154 #14	ENSNSUG00000004165 #14	IKZF2 (ENSNSUG00000004175) #16	ENSNSUG00000004221	ERBB4 (ENSNSUG00000004236) #17	CPS1 (ENSNSUG00000004536) #18	ENSNSUG00000004700	LANCL1 (ENSNSUG00000004707) #19	MYL1 (ENSNSUG00000004715) #20	ACADL (ENSNSUG00000004717) #21	KANSL1L (ENSNSUG00000004719) #22	ENSNSUG00000004721	ENSNSUG00000004723 #23	UNC80 (ENSNSUG00000004726) #24	ENSNSUG00000004751 #26	PTH2R (ENSNSUG00000004799) #30	PIKFYVE (ENSNSUG00000004809) #31	IDH1 (ENSNSUG00000004817) #32	ENSNSUG00000004820	ENSNSUG00000004822	PLEKHM3 (ENSNSUG00000004824)	ENSNSUG00000004832	ENSNSUG00000004833	ENSNSUG00000004835	METTL21A (ENSNSUG00000004836)	CREB1 (ENSNSUG00000004838)
Eastern brown snake	MODERN SPECIES	36	UBE2F (ENSPTXG00000007143)	FN1 (ENSPTXG00000007144) #8	ENSPTXG00000007146	ATIC (ENSPTXG00000007147) #9	ABCA12 (ENSPTXG00000007148) #11	ENSPTXG00000007149 #12	VWC2L (ENSPTXG00000007150) #13	SPAG16 (ENSPTXG00000007151) #14	IKZF2 (ENSPTXG00000007156) #16	ERBB4 (ENSPTXG00000007162) #17	CPS1 (ENSPTXG00000007248) #18	ENSPTXG00000007250	LANCL1 (ENSPTXG00000007251) #19	MYL1 (ENSPTXG00000007252) #20	ACADL (ENSPTXG00000007253) #21	KANSL1L (ENSPTXG00000007254) #22	ENSPTXG00000007255	ENSPTXG00000007256 #23	UNC80 (ENSPTXG00000007262) #24	ENSPTXG00000007270 #26	PTH2R (ENSPTXG00000007351) #30	PIKFYVE (ENSPTXG00000007358) #31	IDH1 (ENSPTXG00000008132) #32	PLEKHM3 (ENSPTXG00000008135)	ENSPTXG00000008136	ENSPTXG00000008137	METTL21A (ENSPTXG00000008138)	CREB1 (ENSPTXG00000008139)	KLF7 (ENSPTXG00000008140)	FASTKD2 (ENSPTXG00000008144)	MDH1B (ENSPTXG00000008146)
Lizard	MODERN SPECIES		ABCA12 (ENSACAG00000015468) #11	BARD1 (ENSACAG00000015438) #12	VWC2L (ENSACAG00000015435) #13	ENSACAG00000042550 #14	SPAG16 (ENSACAG00000009635) #14	ENSACAG00000041259	IKZF2 (ENSACAG00000025864) #16	ENSACAG00000038851	ENSACAG00000038179	ENSACAG00000043707	ERBB4 (ENSACAG00000009921) #17	CPS1 (ENSACAG00000010170) #18	LANCL1 (ENSACAG00000010566) #19	MYL1 (ENSACAG00000010643) #20	ACADL (ENSACAG00000010677) #21	KANSL1L (ENSACAG00000010727) #22	ENSACAG00000010750 #23	UNC80 (ENSACAG00000010788) #24	MAP2 (ENSACAG00000010914) #26	ENSACAG00000041714	ENSACAG00000027521	ENSACAG00000005027	RARS1 (ENSACAG00000004938)	WWC1 (ENSACAG00000004873)	TENM2 (ENSACAG00000004802)	ENSACAG00000040630	ENSACAG00000044699	ENSACAG00000044585	MAT2B (ENSACAG00000028511)	HMMR (ENSACAG00000029328)	NUDCD2 (ENSACAG00000028809)
Laterata	ANCESTRAL SPECIES	13	ENSGT00940000159224	ENSGT00940000154349	ENSGT00390000008926	ENSGT00940000155126 #8	ENSGT00390000004553 #9	ENSGT00940000157295 #11	ENSGT00940000156532 #12	ENSGT00720000108792.B #13	ENSGT00940000155053 #14	ENSGT00940000157137 #16	ENSGT00940000154695 #17	ENSGT00940000157192 #18	ENSGT00530000063186.b.b #19	ENSGT01030000234570.d.a #20	ENSGT00940000157652 #21	ENSGT00530000063688.a #22	ENSGT00390000001447 #23	ENSGT00640000091496 #24	ENSGT00940000156597.b #26
Argentine black and white tegu	MODERN SPECIES	12	MREG (ENSSMRG00000020834)	FN1 (ENSSMRG00000020833) #8	ATIC (ENSSMRG00000020832) #9	ABCA12 (ENSSMRG00000020831) #11	BARD1 (ENSSMRG00000020830) #12	VWC2L (ENSSMRG00000020829) #13	ENSSMRG00000020827 #14	ENSSMRG00000020826 #14	IKZF2 (ENSSMRG00000020825) #16	ENSSMRG00000020823	ERBB4 (ENSSMRG00000020822) #17	CPS1 (ENSSMRG00000020820) #18	LANCL1 (ENSSMRG00000020819) #19	MYL1 (ENSSMRG00000020818) #20	ACADL (ENSSMRG00000020817) #21	KANSL1L (ENSSMRG00000020816) #22	ENSSMRG00000020815 #23	UNC80 (ENSSMRG00000020808) #24	ENSSMRG00000020807 #26	ENSSMRG00000020804	ENSSMRG00000020802	ENSSMRG00000020801	STRADB (ENSSMRG00000020800)	ENSSMRG00000020799	TMEM237 (ENSSMRG00000020798)	MPP4 (ENSSMRG00000020796)	ALS2 (ENSSMRG00000020795)	CDK15 (ENSSMRG00000020794)	FZD7 (ENSSMRG00000020792)	ENSSMRG00000020791	KIAA2012 (ENSSMRG00000020790)
tuatara	MODERN SPECIES	1135											CPS1 (ENSSPUG00000014058) #18	ENSSPUG00000014046	LANCL1 (ENSSPUG00000014024) #19	ENSSPUG00000014003 #20	ACADL (ENSSPUG00000013975) #21	KANSL1L (ENSSPUG00000013801) #22	ENSSPUG00000013750 #23	ENSSPUG00000013742	UNC80 (ENSSPUG00000013493) #24	ENSSPUG00000013279 #26
Anura	ANCESTRAL SPECIES	7	ENSGT00940000163794.y	ENSGT00940000166348	ENSGT00940000155126 #8	ENSGT00390000004553 #9	ENSGT00940000157295 #11	ENSGT00940000156532 #12	ENSGT00720000108792.B #13	ENSGT00940000155053 #14	ENSGT00940000157137 #16	ENSGT00940000154695 #17	ENSGT00390000005983	ENSGT00940000157192 #18	ENSGT00530000063186.b.b #19	ENSGT01030000234570.d.a #20	ENSGT00940000157652 #21	ENSGT00530000063688.a #22	ENSGT00390000001447 #23	ENSGT00640000091496 #24	ENSGT00940000156597.b #26	ENSGT00390000007989	ENSGT00940000155992	ENSGT00390000015709	ENSGT01090000259987.a.a.a	ENSGT00390000004977	ENSGT00940000158193	ENSGT00510000047718	ENSGT00940000154360.A.b
Frog	MODERN SPECIES	9	itgb2 (ENSXETG00000018634)	slx9 (ENSXETG00000018690)	adarb1 (ENSXETG00000018692)	pofut2 (ENSXETG00000018700)	stat5b (ENSXETG00000001624) #26	unc80 (ENSXETG00000023691) #24	ENSXETG00000048787	ENSXETG00000045863	ENSXETG00000036906	adprh (ENSXETG00000001078)	armc8 (ENSXETG00000001081)	rab5d (ENSXETG00000001082)	nme9 (ENSXETG00000001083)	dpepe (ENSXETG00000001084)	acadl (ENSXETG00000001085) #21	kansl1l (ENSXETG00000001088) #22	myl1 (ENSXETG00000006917) #20	lancl1 (ENSXETG00000006918) #19	cps1 (ENSXETG00000006919) #18	ENSXETG00000042388	erbb4 (ENSXETG00000000413) #17	ENSXETG00000044441	ikzf2 (ENSXETG00000003127) #16	vwc2l (ENSXETG00000014240) #13	spag16 (ENSXETG00000038570) #14	ENSXETG00000045433	bard1 (ENSXETG00000014241) #12	abca12 (ENSXETG00000014244) #11	ENSXETG00000038463 #11	atic (ENSXETG00000025087) #9	fn1 (ENSXETG00000010898) #8
Leishan spiny toad	MODERN SPECIES	10	VWC2L (ENSLLEG00000009787) #13	ENSLLEG00000009751	ENSLLEG00000009689 #14	ENSLLEG00000009668	ENSLLEG00000009619	SPAG16 (ENSLLEG00000009409) #14	IKZF2 (ENSLLEG00000009303) #16	ENSLLEG00000009278	ERBB4 (ENSLLEG00000008032) #17	ENSLLEG00000007922	CPS1 (ENSLLEG00000007499) #18	ENSLLEG00000007467	ENSLLEG00000007443 #19	MYL1 (ENSLLEG00000007389) #20	ACADL (ENSLLEG00000007338) #21	KANSL1L (ENSLLEG00000007272) #22	ENSLLEG00000007252 #23	UNC80 (ENSLLEG00000006882) #24	ENSLLEG00000006698 #26	ENSLLEG00000006663	POFUT2 (ENSLLEG00000006574)	ADARB1 (ENSLLEG00000006438)	ENSLLEG00000006415	ENSLLEG00000006395	SLX9 (ENSLLEG00000006278)	ITGB2 (ENSLLEG00000006090)	ENSLLEG00000006052	ENSLLEG00000006035	ENSLLEG00000006021	ENSLLEG00000005983 ##25	ENSLLEG00000005951
Actinopterygii	ANCESTRAL SPECIES	142	ENSGT00940000163794	ENSGT00940000154349	ENSGT00940000159224	ENSGT00940000165690	ENSGT00390000007989	ENSGT00940000155752	ENSGT00940000157295 #11	ENSGT00940000156532 #12	ENSGT00720000108792.B #13	ENSGT00940000157137 #16	ENSGT00940000154695 #17	ENSGT00940000157192 #18	ENSGT00530000063186.b.b #19	ENSGT01030000234570.d.a #20	ENSGT00940000157652 #21	ENSGT00530000063688.a #22	ENSGT00940000156597.b #26	ENSGT00640000091496 #24	ENSGT00390000001447 #23	ENSGT00940000154793.C	ENSGT00940000154365.a.b
Neopterygii	ANCESTRAL SPECIES	63	ENSGT00940000165586	ENSGT00940000154349	ENSGT00940000159224	ENSGT00940000165690	ENSGT00390000007989	ENSGT00940000155752	ENSGT00940000157295 #11	ENSGT00940000156532 #12	ENSGT00720000108792.B #13	ENSGT00940000157137 #16	ENSGT00940000154695 #17	ENSGT00940000157192 #18	ENSGT00530000063186.b.b #19	ENSGT01030000234570.d.a #20	ENSGT00940000157652 #21	ENSGT00530000063688.a #22	ENSGT00940000156597.b #26	ENSGT00640000091496 #24	ENSGT00390000001447 #23	ENSGT00940000154793.C	ENSGT00940000154365.a.b	ENSGT00940000154067.c	ENSGT01090000260051.b.b	ENSGT00940000166042	ENSGT00940000166277	ENSGT00940000156462.B.d	ENSGT00940000156462.B.c.a	ENSGT00940000156462.B.c.b	ENSGT00940000156462.C	ENSGT00950000183138.a.b	ENSGT00940000161839
Osteoglossocephalai	ANCESTRAL SPECIES	903																ENSGT00530000063688.a #22	ENSGT00940000156597.a.a ##26
Clupeocephala	ANCESTRAL SPECIES	255							ENSGT00390000008796	ENSGT00940000158398	ENSGT00940000164835	ENSGT00930000151029.i.a	ENSGT00940000157406	ENSGT00940000160130	ENSGT00710000106813.A	ENSGT00970000197603	ENSGT00530000065251	ENSGT00530000063688.a #22	ENSGT00770000121792	ENSGT00940000156597.a.a ##26	ENSGT01030000234570.d.a.o #20	ENSGT00940000157192 #18	ENSGT00940000154695.d.a #17	ENSGT00940000157137 #16	ENSGT00720000108792.B #13	ENSGT00940000156532 #12	ENSGT00940000157295 #11	ENSGT00980000199646	ENSGT00390000007989	ENSGT00940000155752	ENSGT00390000007946.i.a	ENSGT00390000012561.b.pb.a
Otomorpha	ANCESTRAL SPECIES	301							ENSGT00390000008796	ENSGT00940000158398	ENSGT00940000164835	ENSGT00930000151029.i.a	ENSGT00940000157406	ENSGT00940000160130	ENSGT00710000106813.A	ENSGT00970000197603	ENSGT00530000065251.a.b.a	ENSGT00530000063688.a #22	ENSGT00770000121792	ENSGT00940000156597.a.a ##26	ENSGT01030000234570.d.a.o #20	ENSGT00940000157192 #18	ENSGT00940000154695.d.a #17	ENSGT00940000157137 #16	ENSGT00720000108792.B #13	ENSGT00940000156532 #12	ENSGT00940000157295 #11	ENSGT00980000199646	ENSGT00390000007989	ENSGT00940000155752	ENSGT00390000007946.i.a	ENSGT00390000012561.b.pb.a
Otophysi	ANCESTRAL SPECIES	102	ENSGT00940000158091	ENSGT00940000156180.f	ENSGT00940000163074	ENSGT00390000005415	ENSGT00950000182905.a.a.a.a.b	ENSGT00940000156322	ENSGT00390000011570	ENSGT00390000008796	ENSGT00940000158398	ENSGT00940000164835	ENSGT00930000151029.i.a	ENSGT00940000157406	ENSGT00940000160130	ENSGT00710000106813.A	ENSGT00530000065251.a.b.a	ENSGT00530000063688.a #22	ENSGT00770000121792	ENSGT00940000156597.a.a ##26	ENSGT01030000234570.d.a.o #20	ENSGT00940000157192 #18	ENSGT00940000154695.d.a #17	ENSGT00940000157137 #16	ENSGT00720000108792.B #13	ENSGT00940000156532 #12	ENSGT00940000157295 #11	ENSGT00980000199646	ENSGT00390000007989	ENSGT00890000139491	ENSGT00940000167830	ENSGT00940000165813.b	ENSGT00940000157085
Characiphysae	ANCESTRAL SPECIES	53																ENSGT00530000063688.a #22	ENSGT00940000156597.a.a.d ##26	ENSGT00770000121792	ENSGT00940000156597.a.a.c ##26	ENSGT01030000234570.d.a.o #20	ENSGT00940000157192 #18	ENSGT00940000154695.d.a #17	ENSGT00940000157137 #16	ENSGT00720000108792.B #13	ENSGT00940000156532 #12	ENSGT00940000157295 #11	ENSGT00390000007989	ENSGT00890000139491	ENSGT00940000167830	ENSGT00940000165813.b	ENSGT00940000157085
Characiphysae_b	ANCESTRAL SPECIES	88																ENSGT00530000063688.a #22	ENSGT00940000156597.a.a.d ##26	ENSGT00770000121792	ENSGT00940000156597.a.a.c ##26	ENSGT01030000234570.d.a.o #20	ENSGT00940000157192 #18	ENSGT00940000154695.d.a #17	ENSGT00940000157137 #16	ENSGT00720000108792.B #13	ENSGT00940000156532 #12	ENSGT00940000157295 #11	ENSGT00390000007989	ENSGT00890000139491	ENSGT00940000167830	ENSGT00940000165813.b	ENSGT00940000157085
Characoidei	ANCESTRAL SPECIES	43																ENSGT00530000063688.a #22	ENSGT00940000156597.a.a.d ##26	ENSGT00770000121792	ENSGT00940000156597.a.a.c ##26	ENSGT01030000234570.d.a.o #20	ENSGT00940000157192 #18	ENSGT00940000154695.d.a #17	ENSGT00940000157137 #16	ENSGT00720000108792.B #13	ENSGT00940000156532 #12	ENSGT00940000157295 #11	ENSGT00980000199646	ENSGT00390000007989	ENSGT00890000139491	ENSGT00940000167830	ENSGT00940000165813.b
Red-bellied piranha	MODERN SPECIES	128																ENSPNAG00000013039 #22	ENSPNAG00000013048 ##26	ENSPNAG00000002558 ##26	myl1 (ENSPNAG00000013155) #20	ENSPNAG00000002587	CPS1 (ENSPNAG00000002674) #18	ERBB4 (ENSPNAG00000013421) #17	IKZF2 (ENSPNAG00000002742) #16	vwc2l (ENSPNAG00000005242) #13	BARD1 (ENSPNAG00000013463) #12	ENSPNAG00000002771 #11
Mexicana tetra	MODERN SPECIES	10	tra2b (ENSAMXG00000003627)	igf2bp2a (ENSAMXG00000029202)	tmem41aa (ENSAMXG00000029785)	ehhadh (ENSAMXG00000003551)	zgc:162707 (ENSAMXG00000003520)	nup35 (ENSAMXG00000003371)	ENSAMXG00000031597	ENSAMXG00000040165	znf804a (ENSAMXG00000034108)	ENSAMXG00000033450	prmt2 (ENSAMXG00000032742)	ugt1a2 (ENSAMXG00000031296)	ugt1a2 (ENSAMXG00000038844)	NXPH2 (ENSAMXG00000006797)	spopla (ENSAMXG00000006769)	ENSAMXG00000006762 #22	ENSAMXG00000041387	ENSAMXG00000034032 ##26	myl1 (ENSAMXG00000006751) #20	CPS1 (ENSAMXG00000006717) #18	ERBB4 (ENSAMXG00000018917) #17	IKZF2 (ENSAMXG00000038726) #16	ENSAMXG00000033846	tssk6 (ENSAMXG00000038766)	vwc2l (ENSAMXG00000018901) #13	ENSAMXG00000018892 #12	ABCA12 (ENSAMXG00000018815) #11	ENSAMXG00000035856	ENSAMXG00000039838	pofut2 (ENSAMXG00000035853)	hibch (ENSAMXG00000018759)
Electric eel	MODERN SPECIES	704																ENSEEEG00000018236 #22	ENSEEEG00000018238	ENSEEEG00000018240	ENSEEEG00000018242 ##26	myl1 (ENSEEEG00000018243) #20	CPS1 (ENSEEEG00000018255) #18
Channel catfish	MODERN SPECIES	25	ENSIPUG00000006862	ENSIPUG00000006917	ENSIPUG00000006928	ENSIPUG00000006942	ENSIPUG00000006960	ENSIPUG00000007008	ENSIPUG00000007034	ENSIPUG00000007043	FKBP7 (ENSIPUG00000007117)	COL5A2 (ENSIPUG00000007145)	gulp1a (ENSIPUG00000007217)	tfpia (ENSIPUG00000007252)	calcrla (ENSIPUG00000007286)	ENSIPUG00000007331	ENSIPUG00000007344	kansl1l (ENSIPUG00000007360) #22	map2 (ENSIPUG00000007425) ##26	myl1 (ENSIPUG00000007577) #20	cps1 (ENSIPUG00000007625) #18	erbb4 (ENSIPUG00000007757) #17	ENSIPUG00000007895	ENSIPUG00000007903	ikzf2 (ENSIPUG00000007917) #16	ENSIPUG00000007960	vwc2l (ENSIPUG00000007989) #13	bard1 (ENSIPUG00000008007) #12	ABCA12 (ENSIPUG00000008030) #11	pofut2 (ENSIPUG00000008138)	hibch (ENSIPUG00000008201)	c6h2orf88 (ENSIPUG00000008299)	mstn (ENSIPUG00000008311)
Cyprinoidei	ANCESTRAL SPECIES	40	ENSGT00390000011294	ENSGT00940000156180.f	ENSGT00940000163074	ENSGT00390000005415	ENSGT00950000182905.a.a.a.a.b	ENSGT00940000156322	ENSGT00390000011570	ENSGT00390000008796	ENSGT00940000158398	ENSGT00940000164835	ENSGT00930000151029.i.a	ENSGT00940000157406	ENSGT00940000160130	ENSGT00710000106813.A	ENSGT00530000065251.a.b.a	ENSGT00530000063688.a #22	ENSGT00940000156597.a.a ##26	ENSGT01030000234570.d.a.o #20	ENSGT00940000157192 #18	ENSGT00940000154695.d.a #17	ENSGT00940000157137 #16	ENSGT00720000108792.B #13	ENSGT00940000156532.p #12	ENSGT00940000156532.o #12	ENSGT00940000157295 #11	ENSGT00980000199646	ENSGT00390000007989	ENSGT00890000139491	ENSGT00940000167830	ENSGT00940000165813.b	ENSGT00940000157085
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	181									ENSGT00940000158398.k	ENSGT00940000164835.a	ENSGT00930000151029.i.a.d	ENSGT00940000157406.gb	ENSGT00940000160130.d	ENSGT00710000106813.A.cb	ENSGT00530000065251.a.b.a	ENSGT00530000063688.a.a #22	ENSGT00940000156597.a.a.b ##26	ENSGT01030000234570.d.a.o.c #20	ENSGT00940000157192.f #18	ENSGT00940000154695.d.a.a #17	ENSGT00940000157137.r #16	ENSGT00720000108792.B.c #13	ENSGT00940000156532.p.a #12	ENSGT00940000156532.o #12	ENSGT00940000157295.a #11	ENSGT00390000007989.w	ENSGT00890000139491.l	ENSGT00940000167830.e.a	ENSGT00940000165813.b.a	ENSGT00940000157085.a	ENSGT00950000183178.b.a.d
Goldfish	MODERN SPECIES	49	ccdc93 (ENSCARG00000035128)	PLCD4 (ENSCARG00000034226)	bcs1l (ENSCARG00000034105)	ENSCARG00000033943	CYP27A1 (ENSCARG00000033764)	ENSCARG00000033696	lss (ENSCARG00000033527)	LMLN (ENSCARG00000033137)	OSBPL11 (ENSCARG00000032901)	ENSCARG00000032882	snx4 (ENSCARG00000031157)	znf148 (ENSCARG00000031055)	slc12a8 (ENSCARG00000031023)	heg1 (ENSCARG00000030968)	ENSCARG00000030947	ENSCARG00000030934 #22	MAP2 (ENSCARG00000030866) ##26	myl1 (ENSCARG00000030781) #20	CPS1 (ENSCARG00000024007) #18	ERBB4 (ENSCARG00000023135) #17	IKZF2 (ENSCARG00000023082) #16	vwc2l (ENSCARG00000023071) #13	ENSCARG00000023063 #12	ENSCARG00000023056 #12	ABCA12 (ENSCARG00000022666) #11	pofut2 (ENSCARG00000022282)	hibch (ENSCARG00000022067)	ENSCARG00000022055	mstnb (ENSCARG00000022031)	pms1 (ENSCARG00000021963)	ormdl1 (ENSCARG00000021945)
Cyprininae_a	ANCESTRAL SPECIES	120	ENSGT00390000011294	ENSGT00940000156180.f.b	ENSGT00940000163074.c	ENSGT00390000005415.f	ENSGT00950000182905.a.a.a.a.b.u.b	ENSGT00950000182905.a.a.a.a.b.u.a	ENSGT00940000156322.k	ENSGT00390000008796.b	ENSGT00940000158398.k	ENSGT00940000164835.a	ENSGT00930000151029.i.a.d	ENSGT00940000157406.gb	ENSGT00940000160130.d	ENSGT00710000106813.A.cb	ENSGT00530000065251.a.b.a	ENSGT00530000063688.a.a #22	ENSGT00940000156597.a.a.b ##26	ENSGT01030000234570.d.a.o.c #20	ENSGT00940000157192.f #18	ENSGT00940000154695.d.a.a #17	ENSGT00940000157137.r #16	ENSGT00720000108792.B.c #13	ENSGT00940000156532.p.a #12	ENSGT00940000156532.o #12	ENSGT00940000157295.a #11	ENSGT00390000007989.w	ENSGT00890000139491.l	ENSGT00940000167830.e.a	ENSGT00940000165813.b.a	ENSGT00940000157085.a	ENSGT00950000183178.b.a.d
Common carp reference	MODERN SPECIES	46	ccdc93 (ENSCCRG00000051767)	ENSCCRG00000081111	ENSCCRG00000080565	ENSCCRG00000040847	ENSCCRG00000066492	ENSCCRG00000051718	lss (ENSCCRG00000051707)	ENSCCRG00000051693	OSBPL11 (ENSCCRG00000051686)	ENSCCRG00000051685	snx4 (ENSCCRG00000065337)	znf148 (ENSCCRG00000018205)	slc12a8 (ENSCCRG00000018209)	heg1 (ENSCCRG00000074218)	ENSCCRG00000066921	ENSCCRG00000007085 #22	ENSCCRG00000030747 ##26	myl1 (ENSCCRG00000010677) #20	CPS1 (ENSCCRG00000065144) #18	ERBB4 (ENSCCRG00000056112) #17	ENSCCRG00000081516	IKZF2 (ENSCCRG00000080336) #16	vwc2l (ENSCCRG00000058014) #13	BARD1 (ENSCCRG00000057061) #12	ENSCCRG00000028584 #11	pofut2 (ENSCCRG00000028565)	hibch (ENSCCRG00000055415)	ENSCCRG00000071514	mstnb (ENSCCRG00000060576)	pms1 (ENSCCRG00000003785)	ormdl1 (ENSCCRG00000058116)
Golden-line barbel	MODERN SPECIES	548	clasp1a (ENSSGRG00000012503)	ddx18 (ENSSGRG00000020616)	ccdc93 (ENSSGRG00000020709)	ZNF142 (ENSSGRG00000020845)	bcs1l (ENSSGRG00000020850)	ENSSGRG00000020906	CYP27A1 (ENSSGRG00000020907)	ENSSGRG00000020914	OSBPL11 (ENSSGRG00000021049)	ENSSGRG00000021135	snx4 (ENSSGRG00000021145)	znf148 (ENSSGRG00000021482)	slc12a8 (ENSSGRG00000021484)	heg1 (ENSSGRG00000021492)	ENSSGRG00000021494	ENSSGRG00000021496 #22	MAP2 (ENSSGRG00000021500) ##26	myl1 (ENSSGRG00000021506) #20	CPS1 (ENSSGRG00000021510) #18	ERBB4 (ENSSGRG00000021605) #17
Cyprininae	ANCESTRAL SPECIES	264	ENSGT00390000011294	ENSGT00940000156180.f.b	ENSGT00940000163074.c	ENSGT00390000005415.f	ENSGT00950000182905.a.a.a.a.b.u.a	ENSGT00940000156322.k	ENSGT00390000011570	ENSGT00390000008796.b	ENSGT00390000008796.a	ENSGT00940000158398.l	ENSGT00940000164835.b	ENSGT00930000151029.i.a.c	ENSGT00940000157406.fb	ENSGT00940000160130.c	ENSGT00710000106813.A.bb.a	ENSGT00530000063688.a.b #22	ENSGT00940000156597.a.a.a ##26	ENSGT01030000234570.d.a.o.d #20	ENSGT00940000157192.e #18	ENSGT00940000154695.d.a.b #17	ENSGT00940000157137.q #16	ENSGT00720000108792.B.d #13	ENSGT00940000156532.p.b #12	ENSGT00940000157295.b #11	ENSGT00390000007989.x	ENSGT00890000139491.k	ENSGT00940000167830.e.b	ENSGT00940000165813.b.b	ENSGT00940000157085.b	ENSGT00950000183178.b.a.c	ENSGT00390000010706.a
Cyprininae_a	ANCESTRAL SPECIES	31	ENSGT00940000159158	ENSGT00680000100037.hb	ENSGT00940000156180.f.a	ENSGT00940000163074.d	ENSGT00390000005415.e	ENSGT00950000182905.a.a.a.a.b.v	ENSGT00940000156322.l	ENSGT00390000011570	ENSGT00390000008796.a	ENSGT00940000158398.l	ENSGT00940000164835.b	ENSGT00930000151029.i.a.c	ENSGT00940000157406.fb	ENSGT00940000160130.c	ENSGT00710000106813.A.bb.a	ENSGT00530000063688.a.b #22	ENSGT00940000156597.a.a.a ##26	ENSGT01030000234570.d.a.o.d #20	ENSGT00940000157192.e #18	ENSGT00940000154695.d.a.b #17	ENSGT00940000157137.q #16	ENSGT00720000108792.B.d #13	ENSGT00940000156532.p.b #12	ENSGT01060000253671	ENSGT00940000157295.b #11	ENSGT00390000007989.x	ENSGT00890000139491.k	ENSGT00940000167830.e.b	ENSGT00940000165813.b.b	ENSGT00940000157085.b	ENSGT00950000183178.b.a.c
Common carp reference	MODERN SPECIES	41	clasp1a (ENSCCRG00000052056)	tfcp2l1 (ENSCCRG00000047436)	PLCD4 (ENSCCRG00000047719)	ENSCCRG00000040826	bcs1l (ENSCCRG00000080918)	ENSCCRG00000051725	ENSCCRG00000052655	lss (ENSCCRG00000074874)	ENSCCRG00000052654	OSBPL11 (ENSCCRG00000017660)	ENSCCRG00000017670	snx4 (ENSCCRG00000017677)	znf148 (ENSCCRG00000054529)	slc12a8 (ENSCCRG00000018232)	heg1 (ENSCCRG00000018220)	ENSCCRG00000018241 #22	ENSCCRG00000018246 ##26	myl1 (ENSCCRG00000010670) #20	CPS1 (ENSCCRG00000011028) #18	ERBB4 (ENSCCRG00000062984) #17	IKZF2 (ENSCCRG00000067957) #16	ENSCCRG00000061339	vwc2l (ENSCCRG00000044130) #13	ENSCCRG00000044307 #12	ENSCCRG00000054911	ENSCCRG00000023106 #11	hibch (ENSCCRG00000028544)	ENSCCRG00000077185	mstnb (ENSCCRG00000028516)	pms1 (ENSCCRG00000075365)	ormdl1 (ENSCCRG00000061988)
Zebrafish	MODERN SPECIES	24	ZNF142 (ENSDARG00000061373)	bcs1l (ENSDARG00000012295)	ENSDARG00000033802	CYP27A1 (ENSDARG00000069186)	CYP27A1 (ENSDARG00000088013)	cyp27a1.4 (ENSDARG00000055159)	ENSDARG00000021402	lss (ENSDARG00000061274)	LMLN (ENSDARG00000061265)	OSBPL11 (ENSDARG00000076328)	ENSDARG00000055136	snx4 (ENSDARG00000022659)	znf148 (ENSDARG00000055106)	slc12a8 (ENSDARG00000074384)	heg1 (ENSDARG00000018441)	ENSDARG00000075284 #22	ENSDARG00000055052	myl1 (ENSDARG00000014196) #20	CPS1 (ENSDARG00000020028) #18	ERBB4 (ENSDARG00000089536) #17	IKZF2 (ENSDARG00000069111) #16	vwc2l (ENSDARG00000069134) #13	BARD1 (ENSDARG00000076733) #12	ABCA12 (ENSDARG00000074749) #11	ENSDARG00000093484	ENSDARG00000092452	pofut2 (ENSDARG00000045175)	hibch (ENSDARG00000054867)	ENSDARG00000097855	mstnb (ENSDARG00000069133)	pms1 (ENSDARG00000000476)
Clupeiformes	ANCESTRAL SPECIES	1	ENSGT00940000160626.b	ENSGT01050000244848.A.a	ENSGT01050000244848.A.b.a	ENSGT00390000016794.c.a	ENSGT00940000163961.b.i	ENSGT01030000234555.b.e	ENSGT00390000008796	ENSGT00940000158398	ENSGT00940000164835	ENSGT00930000151029.i.a	ENSGT00940000157406	ENSGT00940000160130	ENSGT00710000106813.A	ENSGT00970000197603	ENSGT00530000065251.a.b.a	ENSGT00530000063688.a #22	ENSGT00940000156597.a.a ##26	ENSGT01030000234570.d.a.o #20	ENSGT00940000157192 #18	ENSGT00940000154695.d.a #17	ENSGT00940000157137 #16	ENSGT00720000108792.B #13	ENSGT00940000156532 #12	ENSGT00940000157295 #11	ENSGT00390000007989	ENSGT00940000155752	ENSGT00390000007946.i.a	ENSGT00390000012561.b.pb.a	ENSGT00990000204171	ENSGT01030000235037	ENSGT00940000155442.o.e
Denticle herring	MODERN SPECIES	19	TNS1 (ENSDCDG00000026116)	PGC (ENSDCDG00000027393)	CXCR1 (ENSDCDG00000027442)	ENSDCDG00000027443	arpc2 (ENSDCDG00000027445)	ENSDCDG00000027448	LMLN (ENSDCDG00000027455)	OSBPL11 (ENSDCDG00000027560)	ENSDCDG00000027572	snx4 (ENSDCDG00000027576)	znf148 (ENSDCDG00000027623)	slc12a8 (ENSDCDG00000027625)	heg1 (ENSDCDG00000027628)	ENSDCDG00000027630	ENSDCDG00000027633	ENSDCDG00000027635 #22	ENSDCDG00000027638 ##26	myl1 (ENSDCDG00000027642) #20	CPS1 (ENSDCDG00000027653) #18	ERBB4 (ENSDCDG00000027895) #17	IKZF2 (ENSDCDG00000032306) #16	vwc2l (ENSDCDG00000032310) #13	ENSDCDG00000032312 #12	ENSDCDG00000032314 #12	ABCA12 (ENSDCDG00000032317) #11	pofut2 (ENSDCDG00000032329)	MYO1B (ENSDCDG00000032365)	BZW1 (ENSDCDG00000032459)	ENSDCDG00000032462	ENSDCDG00000032465	dync1i2a (ENSDCDG00000032567)
Euteleosteomorpha	ANCESTRAL SPECIES	232									ENSGT00940000167716	ENSGT00940000164835	ENSGT00930000151029.i.a	ENSGT00940000157406	ENSGT00940000160130	ENSGT00710000106813.A	ENSGT00530000065251	ENSGT00530000063688.a #22	ENSGT00770000121792	ENSGT00940000156597.a.a ##26	ENSGT01030000234570.d.a.o #20	ENSGT00940000157192 #18	ENSGT00940000154695.d.a #17	ENSGT00940000157137 #16	ENSGT00720000108792.B #13	ENSGT00940000156532 #12	ENSGT00940000157295 #11	ENSGT00980000199646	ENSGT00390000007989	ENSGT00940000155752	ENSGT00390000007946.i.a	ENSGT00390000012561.b.pb.a
Acanthomorphata	ANCESTRAL SPECIES	51	ENSGT00940000158913	ENSGT00950000182832.B	ENSGT00530000063353.a.b.b	ENSGT00940000168612	ENSGT00940000153259.a.b.b	ENSGT00940000160405	ENSGT00940000155238	ENSGT00950000183003.a.a.b.c.b	ENSGT00440000039314.a	ENSGT00940000161561	ENSGT00940000158191.b	ENSGT00940000157406	ENSGT00940000160130	ENSGT00710000106813.A	ENSGT00530000065251	ENSGT00530000063688.a #22	ENSGT00770000121792	ENSGT00940000156597.a.a ##26	ENSGT01030000234570.d.a.o #20	ENSGT00940000157192 #18	ENSGT00940000154695.d.a #17	ENSGT00940000157137 #16	ENSGT00720000108792.B #13	ENSGT00940000156532 #12	ENSGT00940000157295 #11	ENSGT00980000199646	ENSGT00390000007989	ENSGT00390000007946.i.a	ENSGT00940000155752	ENSGT00390000012561.b.pb.a	ENSGT00940000157521.a.a
Euacanthomorphacea	ANCESTRAL SPECIES	35	ENSGT00940000158913	ENSGT00950000182832.B	ENSGT00530000063353.a.b.b	ENSGT00940000168612	ENSGT00940000153259.a.b.b	ENSGT00940000160405	ENSGT00940000155238	ENSGT00950000183003.a.a.b.c.b	ENSGT00440000039314.a	ENSGT00940000161561	ENSGT00940000158191.b	ENSGT00940000157406	ENSGT00940000160130	ENSGT00710000106813.A	ENSGT00530000065251	ENSGT00530000063688.a #22	ENSGT00770000121792	ENSGT00940000156597.a.a ##26	ENSGT01030000234570.d.a.o #20	ENSGT00940000157192 #18	ENSGT00940000154695.d.a #17	ENSGT00940000157137 #16	ENSGT00720000108792.B #13	ENSGT00940000156532 #12	ENSGT00940000157295 #11	ENSGT00980000199646	ENSGT00390000007989	ENSGT00390000007946.i.a	ENSGT00940000155752	ENSGT00390000012561.b.pb.a	ENSGT00940000157521.a.a
Percomorphaceae	ANCESTRAL SPECIES	48	ENSGT00940000158913	ENSGT00950000182832.B	ENSGT00530000063353.a.b.b	ENSGT00940000168612	ENSGT00940000153259.a.b.b	ENSGT00940000160405	ENSGT00940000155238	ENSGT00950000183003.a.a.b.c.b	ENSGT00440000039314.a	ENSGT00940000161561	ENSGT00940000158191.b	ENSGT00940000157406	ENSGT00940000160130	ENSGT00710000106813.A	ENSGT00530000065251	ENSGT00530000063688.a #22	ENSGT00770000121792	ENSGT00940000156597.a.a ##26	ENSGT01030000234570.d.a.o #20	ENSGT00940000157192 #18	ENSGT00940000154695.d.a #17	ENSGT00940000157137 #16	ENSGT00720000108792.B #13	ENSGT00940000156532 #12	ENSGT00940000157295 #11	ENSGT00980000199646	ENSGT00390000007989	ENSGT00390000007946.i.a
Percomorphaceae_B	ANCESTRAL SPECIES	17	ENSGT00940000158913	ENSGT00950000182832.B	ENSGT00530000063353.a.b.b	ENSGT00940000168612	ENSGT00940000153259.a.b.b	ENSGT00940000160405	ENSGT00940000155238	ENSGT00950000183003.a.a.b.c.b	ENSGT00440000039314.a	ENSGT00940000161561	ENSGT00940000158191.b	ENSGT00940000157406	ENSGT00940000160130	ENSGT00710000106813.A	ENSGT00530000065251	ENSGT00530000063688.a #22	ENSGT00770000121792	ENSGT00940000156597.a.a ##26	ENSGT01030000234570.d.a.o #20	ENSGT00940000157192 #18	ENSGT00940000154695.d.a #17	ENSGT00940000157137 #16	ENSGT00720000108792.B #13	ENSGT00940000156532 #12	ENSGT00940000157295 #11	ENSGT00390000007989	ENSGT00950000183165.a.a.b	ENSGT00950000183165.b.a.e.b.d.a.a.a.a	ENSGT00940000160220	ENSGT00940000154095.b.b.a.b	ENSGT00940000155522.g.a
Ovalentaria	ANCESTRAL SPECIES	14	ENSGT00940000158913	ENSGT00950000182832.B	ENSGT00530000063353.a.b.b	ENSGT00940000168612	ENSGT00940000153259.a.b.b	ENSGT00940000160405	ENSGT00940000155238	ENSGT00950000183003.a.a.b.c.b	ENSGT00440000039314.a	ENSGT00940000161561	ENSGT00940000158191.b	ENSGT00940000157406	ENSGT00940000160130	ENSGT00710000106813.A	ENSGT00530000065251	ENSGT00530000063688.a #22	ENSGT00770000121792	ENSGT00940000156597.a.a ##26	ENSGT01030000234570.d.a.o #20	ENSGT00940000157192 #18	ENSGT00940000154695.d.a #17	ENSGT00940000157137 #16	ENSGT00720000108792.B #13	ENSGT00940000156532 #12	ENSGT00940000157295 #11	ENSGT00390000007989	ENSGT00950000183165.a.a.b	ENSGT00950000183165.b.a.e.b.d.a.a.a.b	ENSGT00950000183165.b.a.e.b.d.a.a.a.a	ENSGT00940000160220	ENSGT00940000154095.b.b.a.b
Ovalentaria_B	ANCESTRAL SPECIES	12	ENSGT00940000158913	ENSGT00950000182832.B	ENSGT00530000063353.a.b.b	ENSGT00940000168612	ENSGT00940000153259.a.b.b	ENSGT00940000160405	ENSGT00940000155238	ENSGT00950000183003.a.a.b.c.b	ENSGT00440000039314.a	ENSGT00940000161561	ENSGT00940000158191.b	ENSGT00940000157406	ENSGT00940000160130	ENSGT00710000106813.A	ENSGT00530000065251	ENSGT00530000063688.a #22	ENSGT00940000156597.a.a ##26	ENSGT01030000234570.d.a.o #20	ENSGT00940000157192 #18	ENSGT00940000154695.d.a #17	ENSGT00940000157137 #16	ENSGT00720000108792.B #13	ENSGT00940000156532 #12	ENSGT00940000157295 #11	ENSGT00390000007989	ENSGT00950000183165.a.a.b	ENSGT00950000183165.b.a.e.b.d.a.a.a.a	ENSGT00940000160220	ENSGT00950000183165.b.a.e.b.d.a.a.a.b	ENSGT00950000183165.b.a.e.b.d.a.b	ENSGT00940000166954
Pomacentridae	ANCESTRAL SPECIES	363															ENSGT00970000197603	ENSGT00530000063688.a #22
Pomacentridae_A	ANCESTRAL SPECIES	390															ENSGT00970000197603	ENSGT00530000063688.a #22
Amphiprion	ANCESTRAL SPECIES	421															ENSGT00970000197603	ENSGT00530000063688.a #22
Clown anemonefish	MODERN SPECIES	844											ENSAOCG00000024540	znf148 (ENSAOCG00000024544)	slc12a8 (ENSAOCG00000024547)	heg1 (ENSAOCG00000024552)	ENSAOCG00000024555	ENSAOCG00000024558 #22
Spiny chromis	MODERN SPECIES	799						ENSAPOG00000007249	ENSAPOG00000007233	ENSAPOG00000007209	akap17a (ENSAPOG00000007200)	asmt (ENSAPOG00000007162)	ENSAPOG00000007151	znf148 (ENSAPOG00000007136)	slc12a8 (ENSAPOG00000007109)	heg1 (ENSAPOG00000007031)	ENSAPOG00000007013	ENSAPOG00000006999 #22
Cichlidae	ANCESTRAL SPECIES	14	ENSGT01010000222287.B.b.a.a.a	ENSGT00940000158913	ENSGT00950000182832.B	ENSGT00530000063353.a.b.b	ENSGT00940000168612	ENSGT00940000153259.a.b.b	ENSGT00940000160405	ENSGT00940000155238	ENSGT00950000183003.a.a.b.c.b	ENSGT00440000039314.a	ENSGT00940000161561	ENSGT00940000158191.b	ENSGT00940000157406	ENSGT00940000160130	ENSGT00710000106813.A	ENSGT00530000063688.a #22	ENSGT00940000156597.a.a ##26	ENSGT01030000234570.d.a.o #20	ENSGT00940000157192 #18	ENSGT00940000154695.d.a #17	ENSGT00940000157137 #16	ENSGT00720000108792.B #13	ENSGT00940000156532 #12	ENSGT00940000157295 #11	ENSGT00390000007989	ENSGT00950000183165.a.a.b	ENSGT00950000183165.b.a.e.b.d.a.a.a.b	ENSGT00950000183165.b.a.e.b.d.a.b	ENSGT00940000166954	ENSGT00940000154095.b.b.a.b	ENSGT00940000155522.g.a
Pseudocrenilabrinae	ANCESTRAL SPECIES	15	ENSGT01010000222287.B.b.a.a.a	ENSGT00940000158913	ENSGT00950000182832.B	ENSGT00530000063353.a.b.b	ENSGT00940000168612	ENSGT00940000153259.a.b.b	ENSGT00940000160405	ENSGT00940000155238	ENSGT00950000183003.a.a.b.c.b	ENSGT00440000039314.a	ENSGT00940000161561	ENSGT00940000158191.b	ENSGT00940000157406	ENSGT00940000160130	ENSGT00710000106813.A	ENSGT00530000063688.a #22	ENSGT00940000156597.a.a ##26	ENSGT01030000234570.d.a.o #20	ENSGT00940000157192 #18	ENSGT00940000154695.d.a #17	ENSGT00940000157137 #16	ENSGT00720000108792.B #13	ENSGT00940000156532 #12	ENSGT00940000157295 #11	ENSGT00390000007989	ENSGT00950000183165.a.a.b	ENSGT00950000183165.b.a.e.b.d.a.a.a.b	ENSGT00950000183165.b.a.e.b.d.a.b	ENSGT00940000166954	ENSGT00940000154095.b.b.a.b	ENSGT00940000155522.g.a
Nile tilapia	MODERN SPECIES	7	ZNF654 (ENSONIG00000004279)	HTR1F (ENSONIG00000004278)	pou1f1 (ENSONIG00000004275)	chmp2b (ENSONIG00000039877)	VGLL3 (ENSONIG00000004268)	ENSONIG00000004266	edar (ENSONIG00000004260)	SH3RF3 (ENSONIG00000004255)	septin10 (ENSONIG00000004250)	SOWAHC (ENSONIG00000004249)	akap17a (ENSONIG00000004245)	asmt (ENSONIG00000004243)	ENSONIG00000004241	znf148 (ENSONIG00000004240)	heg1 (ENSONIG00000004232)	ENSONIG00000034825 #22	ENSONIG00000004229 ##26	myl1 (ENSONIG00000004223) #20	CPS1 (ENSONIG00000004217) #18	ERBB4 (ENSONIG00000004212) #17	IKZF2 (ENSONIG00000004211) #16	vwc2l (ENSONIG00000004208) #13	BARD1 (ENSONIG00000004203) #12	ABCA12 (ENSONIG00000004195) #11	pofut2 (ENSONIG00000004193)	TUBA4A (ENSONIG00000036516)	ENSONIG00000031701	ENSONIG00000004181	ptprna (ENSONIG00000004172)	desma (ENSONIG00000037686)	TMEM198 (ENSONIG00000004159)
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	14	ENSGT00940000158913	ENSGT00950000182832.B	ENSGT00530000063353.a.b.b	ENSGT00940000168612	ENSGT00940000153259.a.b.b	ENSGT00940000179630	ENSGT00940000160405	ENSGT00940000155238	ENSGT00950000183003.a.a.b.c.b	ENSGT00440000039314.a	ENSGT00940000161561	ENSGT00940000158191.b	ENSGT00940000157406	ENSGT00940000160130	ENSGT00710000106813.A	ENSGT00530000063688.a #22	ENSGT00940000156597.a.a ##26	ENSGT01030000234570.d.a.o #20	ENSGT00940000157192 #18	ENSGT00940000154695.d.a #17	ENSGT00940000157137 #16	ENSGT00720000108792.B #13	ENSGT00940000156532 #12	ENSGT00940000157295 #11	ENSGT00390000007989	ENSGT00950000183165.a.a.b.n	ENSGT00950000183165.b.a.e.b.d.a.a.a.b	ENSGT00950000183165.a.a.b.m	ENSGT00950000183165.b.a.e.b.d.a.b	ENSGT00940000166954	ENSGT00940000154095.b.b.a.b
Haplochromini	ANCESTRAL SPECIES	19	ENSGT00940000158913	ENSGT00950000182832.B	ENSGT00530000063353.a.b.b	ENSGT00940000168612	ENSGT00940000153259.a.b.b	ENSGT00940000179630	ENSGT00940000160405	ENSGT00940000155238	ENSGT00950000183003.a.a.b.c.b	ENSGT00440000039314.a	ENSGT00940000161561	ENSGT00940000158191.b	ENSGT00940000157406	ENSGT00940000160130	ENSGT00710000106813.A	ENSGT00530000063688.a #22	ENSGT00940000156597.a.a ##26	ENSGT01030000234570.d.a.o #20	ENSGT00940000157192 #18	ENSGT00940000154695.d.a #17	ENSGT00940000157137 #16	ENSGT00720000108792.B #13	ENSGT00940000156532 #12	ENSGT00940000157295 #11	ENSGT00390000007989	ENSGT00950000183165.a.a.b.n	ENSGT00950000183165.b.a.e.b.d.a.a.a.b	ENSGT00950000183165.a.a.b.m	ENSGT00950000183165.b.a.e.b.d.a.b	ENSGT00940000166954	ENSGT00940000154095.b.b.a.b
Burton s mouthbrooder	MODERN SPECIES	460	HTR1F (ENSHBUG00000013949)	pou1f1 (ENSHBUG00000013936)	chmp2ba (ENSHBUG00000013869)	VGLL3 (ENSHBUG00000013832)	ENSHBUG00000013821	edar (ENSHBUG00000013804)	SH3RF3 (ENSHBUG00000013785)	septin10 (ENSHBUG00000013743)	SOWAHC (ENSHBUG00000013720)	akap17a (ENSHBUG00000013669)	asmt (ENSHBUG00000013637)	ENSHBUG00000013610	znf148 (ENSHBUG00000013598)	slc12a8 (ENSHBUG00000013566)	heg1 (ENSHBUG00000013513)	ENSHBUG00000013500 #22	ENSHBUG00000013484 ##26	ENSHBUG00000013471 ##26	myl1 (ENSHBUG00000013411) #20	CPS1 (ENSHBUG00000013381) #18	ERBB4 (ENSHBUG00000013287) #17
Atherinomorphae	ANCESTRAL SPECIES	13	ENSGT01010000222287.B.b.a.a.a	ENSGT00940000158913	ENSGT00950000182832.B	ENSGT00530000063353.a.b.b	ENSGT00940000168612	ENSGT00940000153259.a.b.b	ENSGT00940000160405	ENSGT00940000155238	ENSGT00950000183003.a.a.b.c.b	ENSGT00440000039314.a	ENSGT00940000161561	ENSGT00940000158191.b	ENSGT00940000157406	ENSGT00940000160130	ENSGT00710000106813.A	ENSGT00530000063688.a #22	ENSGT00770000121792	ENSGT00940000156597.a.a ##26	ENSGT01030000234570.d.a.o #20	ENSGT00940000157192 #18	ENSGT00940000154695.d.a #17	ENSGT00940000157137 #16	ENSGT00720000108792.B #13	ENSGT00940000156532 #12	ENSGT00940000157295 #11	ENSGT00390000007989	ENSGT00950000183165.a.a.b	ENSGT00950000183165.b.a.e.b.d.a.a.a.b	ENSGT00950000183165.b.a.e.b.d.a.b	ENSGT00940000160220	ENSGT00940000169984
Cyprinodontiformes	ANCESTRAL SPECIES	15	ENSGT01010000222287.B.b.a.a.a	ENSGT00940000158913	ENSGT00950000182832.B	ENSGT00530000063353.a.b.b	ENSGT00940000168612	ENSGT00940000153259.a.b.b	ENSGT00940000160405	ENSGT00940000155238	ENSGT00950000183003.a.a.b.c.b	ENSGT00440000039314.a	ENSGT00940000161561	ENSGT00940000158191.b	ENSGT00940000157406	ENSGT00940000160130	ENSGT00710000106813.A	ENSGT00530000063688.a #22	ENSGT00770000121792	ENSGT00940000156597.a.a ##26	ENSGT01030000234570.d.a.o #20	ENSGT00940000157192 #18	ENSGT00940000154695.d.a #17	ENSGT00940000157137 #16	ENSGT00720000108792.B #13	ENSGT00940000156532 #12	ENSGT00940000157295 #11	ENSGT00390000007989	ENSGT00950000183165.a.a.b	ENSGT00950000183165.b.a.e.b.d.a.b	ENSGT00940000160220	ENSGT00940000169984	ENSGT00950000183165.a.b
Aplocheiloidei	ANCESTRAL SPECIES	6	ENSGT00940000165278	ENSGT01010000222287.B.b.a.a.a	ENSGT00940000158913	ENSGT00950000182832.B	ENSGT00530000063353.a.b.b	ENSGT00940000168612	ENSGT00940000153259.a.b.b	ENSGT00940000160405	ENSGT00940000155238	ENSGT00950000183003.a.a.b.c.b	ENSGT00440000039314.a	ENSGT00940000161561	ENSGT00940000158191.b	ENSGT00940000157406	ENSGT00940000160130	ENSGT00530000063688.a #22	ENSGT00940000156597.a.a ##26	ENSGT01030000234570.d.a.o #20	ENSGT00940000157192 #18	ENSGT00940000154695.d.a #17	ENSGT00940000157137 #16	ENSGT00720000108792.B #13	ENSGT00940000156532 #12	ENSGT00940000157295 #11	ENSGT00390000007989	ENSGT00950000183165.a.a.b	ENSGT00950000183165.b.a.e.b.d.a.b	ENSGT00940000160220	ENSGT00950000183165.a.b	ENSGT00950000183165.b.a.e.b.d.a.a.a.b	ENSGT00950000183165.b.a.e.b.d.a.a.a.a
Mangrove rivulus	MODERN SPECIES	74	ENSKMAG00000000492	pou1f1 (ENSKMAG00000000448)	chmp2ba (ENSKMAG00000000401)	VGLL3 (ENSKMAG00000000390)	ENSKMAG00000000372	edar (ENSKMAG00000000291)	SH3RF3 (ENSKMAG00000000176)	septin10 (ENSKMAG00000021282)	SOWAHC (ENSKMAG00000021278)	akap17a (ENSKMAG00000021272)	asmt (ENSKMAG00000021265)	ENSKMAG00000021258	znf148 (ENSKMAG00000021244)	slc12a8 (ENSKMAG00000021232)	ENSKMAG00000021223	ENSKMAG00000021196 #22	ENSKMAG00000021166 ##26	myl1 (ENSKMAG00000021142) #20	CPS1 (ENSKMAG00000021008) #18	ENSKMAG00000020958 #17	ENSKMAG00000020922 #17	ENSKMAG00000020911 #17	IKZF2 (ENSKMAG00000020894) #16	vwc2l (ENSKMAG00000020877) #13	BARD1 (ENSKMAG00000020864) #12	ABCA12 (ENSKMAG00000020788) #11	pofut2 (ENSKMAG00000020758)	TUBA4A (ENSKMAG00000020741)	tuba8l3 (ENSKMAG00000020723)	DNAJB2 (ENSKMAG00000020695)	ptprna (ENSKMAG00000020634)
Turquoise killifish	MODERN SPECIES	24																ENSNFUG00015019129 #22	ENSNFUG00015019122 ##26	ENSNFUG00015019114 ##26	myl1 (ENSNFUG00015019106) #20	ENSNFUG00015019101	CPS1 (ENSNFUG00015015766) #18
Cyprinodontoidei	ANCESTRAL SPECIES	13	ENSGT00950000183034.A.h	ENSGT01010000222287.B.b.a.a.a	ENSGT00940000158913	ENSGT00950000182832.B	ENSGT00530000063353.a.b.b	ENSGT00940000153259.a.b.b	ENSGT00940000160405	ENSGT00940000155238	ENSGT00950000183003.a.a.b.c.b	ENSGT00440000039314.a	ENSGT00940000161561	ENSGT00940000158191.b	ENSGT00940000157406	ENSGT00940000160130	ENSGT00710000106813.A	ENSGT00530000063688.a #22	ENSGT00770000121792	ENSGT00940000156597.a.a ##26	ENSGT01030000234570.d.a.o #20	ENSGT00940000157192 #18	ENSGT00940000154695.d.a #17	ENSGT00940000157137 #16	ENSGT00720000108792.B #13	ENSGT00940000156532 #12	ENSGT00940000157295 #11	ENSGT00390000007989	ENSGT00940000154205	ENSGT00940000154095.b.b.a.b	ENSGT00940000155522.g.a	ENSGT00390000016940.c.b.a	ENSGT00950000182882.A.b.b.e
Poeciliinae	ANCESTRAL SPECIES	25	ENSGT00950000183034.A.h	ENSGT01010000222287.B.b.a.a.a	ENSGT00940000158913	ENSGT00950000182832.B	ENSGT00530000063353.a.b.b	ENSGT00940000153259.a.b.b	ENSGT00940000160405	ENSGT00940000155238	ENSGT00950000183003.a.a.b.c.b	ENSGT00440000039314.a	ENSGT00940000161561	ENSGT00940000158191.b	ENSGT00940000157406	ENSGT00940000160130	ENSGT00710000106813.A	ENSGT00530000063688.a #22	ENSGT00770000121792	ENSGT00940000156597.a.a ##26	ENSGT01030000234570.d.a.o #20	ENSGT00940000157192 #18	ENSGT00940000154695.d.a #17	ENSGT00940000157137 #16	ENSGT00720000108792.B #13	ENSGT00940000156532 #12	ENSGT00940000157295 #11	ENSGT00390000007989	ENSGT00950000183165.b.a.e.b.d.a.a.a.b	ENSGT00940000160220	ENSGT00940000169984	ENSGT00950000183165.b.a.e.b.d.a.a.a.a	ENSGT00940000154205
Poecilia	ANCESTRAL SPECIES	13	ENSGT00950000183034.A.h	ENSGT01010000222287.B.b.a.a.a	ENSGT00940000158913	ENSGT00950000182832.B	ENSGT00530000063353.a.b.b	ENSGT00940000153259.a.b.b	ENSGT00940000160405	ENSGT00940000155238	ENSGT00950000183003.a.a.b.c.b	ENSGT00440000039314.a	ENSGT00940000161561	ENSGT00940000158191.b	ENSGT00940000157406	ENSGT00940000160130	ENSGT00710000106813.A	ENSGT00530000063688.a #22	ENSGT00770000121792	ENSGT00940000156597.a.a ##26	ENSGT01030000234570.d.a.o #20	ENSGT00940000157192 #18	ENSGT00940000154695.d.a #17	ENSGT00940000157137 #16	ENSGT00720000108792.B #13	ENSGT00940000156532 #12	ENSGT00940000157295 #11	ENSGT00390000007989	ENSGT00950000183165.b.a.e.b.d.a.a.a.b	ENSGT00940000160220	ENSGT00940000154095.b.b.a.b	ENSGT00940000155522.g.a	ENSGT00390000016940.c.b.a
NAME_6	ANCESTRAL SPECIES	80	ENSGT00950000183034.A.h	ENSGT01010000222287.B.b.a.a.a	ENSGT00940000158913	ENSGT00950000182832.B	ENSGT00530000063353.a.b.b	ENSGT00940000153259.a.b.b	ENSGT00940000160405	ENSGT00940000155238	ENSGT00950000183003.a.a.b.c.b	ENSGT00440000039314.a	ENSGT00940000161561	ENSGT00940000158191.b	ENSGT00940000157406	ENSGT00940000160130	ENSGT00710000106813.A	ENSGT00530000063688.a #22	ENSGT00770000121792	ENSGT00940000156597.a.a ##26	ENSGT01030000234570.d.a.o #20	ENSGT00940000157192 #18	ENSGT00940000154695.d.a #17
Amazon molly	MODERN SPECIES	335	ZNF654 (ENSPFOG00000005282)	HTR1F (ENSPFOG00000005260)	pou1f1 (ENSPFOG00000005115)	chmp2ba (ENSPFOG00000005036)	VGLL3 (ENSPFOG00000005002)	edar (ENSPFOG00000004898)	SH3RF3 (ENSPFOG00000004645)	septin10 (ENSPFOG00000004433)	SOWAHC (ENSPFOG00000004395)	akap17a (ENSPFOG00000004251)	asmt (ENSPFOG00000022834)	ENSPFOG00000004166	znf148 (ENSPFOG00000004115)	slc12a8 (ENSPFOG00000003862)	heg1 (ENSPFOG00000003766)	ENSPFOG00000003731 #22	ENSPFOG00000024693	ENSPFOG00000003635 ##26	myl1 (ENSPFOG00000003558) #20	CPS1 (ENSPFOG00000002962) #18	ERBB4 (ENSPFOG00000002105) #17
Sailfin molly	MODERN SPECIES	19							SH3RF3 (ENSPLAG00000018676)	septin10 (ENSPLAG00000000666)	SOWAHC (ENSPLAG00000018737)	akap17a (ENSPLAG00000018754)	asmt (ENSPLAG00000000429)	ENSPLAG00000018870	znf148 (ENSPLAG00000018914)	slc12a8 (ENSPLAG00000018950)	ENSPLAG00000018968	ENSPLAG00000018975 #22	ENSPLAG00000019058 ##26	myl1 (ENSPLAG00000019095) #20	CPS1 (ENSPLAG00000000433) #18	ERBB4 (ENSPLAG00000019256) #17
Guppy	MODERN SPECIES	450	HTR1F (ENSPREG00000012727)	pou1f1 (ENSPREG00000012708)	chmp2ba (ENSPREG00000012692)	VGLL3 (ENSPREG00000012685)	edar (ENSPREG00000012664)	ENSPREG00000012660	SH3RF3 (ENSPREG00000012634)	septin10 (ENSPREG00000012591)	SOWAHC (ENSPREG00000012566)	akap17a (ENSPREG00000012540)	asmt (ENSPREG00000012525)	ENSPREG00000012474	znf148 (ENSPREG00000012456)	slc12a8 (ENSPREG00000012418)	heg1 (ENSPREG00000012397)	ENSPREG00000012384 #22	ENSPREG00000012328 ##26	myl1 (ENSPREG00000012307) #20	CPS1 (ENSPREG00000012234) #18	ERBB4 (ENSPREG00000012150) #17	IKZF2 (ENSPREG00000012031) #16	vwc2l (ENSPREG00000011982) #13	BARD1 (ENSPREG00000011957) #12	ABCA12 (ENSPREG00000011867) #11	pofut2 (ENSPREG00000011831)	TUBA4A (ENSPREG00000011571)	tuba8l5 (ENSPREG00000011124)	tuba8l3 (ENSPREG00000011058)	ENSPREG00000011056	ENSPREG00000011045	ptprna (ENSPREG00000010981)
Platyfish	MODERN SPECIES	21	ZNF654 (ENSXMAG00000008761)	HTR1F (ENSXMAG00000008770)	pou1f1 (ENSXMAG00000008771)	chmp2ba (ENSXMAG00000008780)	VGLL3 (ENSXMAG00000016314)	edar (ENSXMAG00000016298)	SH3RF3 (ENSXMAG00000016288)	septin10 (ENSXMAG00000016237)	SOWAHC (ENSXMAG00000016235)	akap17a (ENSXMAG00000016225)	asmt (ENSXMAG00000016211)	ENSXMAG00000025732	znf148 (ENSXMAG00000016196)	slc12a8 (ENSXMAG00000016190)	heg1 (ENSXMAG00000016187)	ENSXMAG00000016184 #22	ENSXMAG00000016181 ##26	ENSXMAG00000029298 ##26	myl1 (ENSXMAG00000024579) #20	CPS1 (ENSXMAG00000016110) #18	ERBB4 (ENSXMAG00000016012) #17	IKZF2 (ENSXMAG00000026156) #16	vwc2l (ENSXMAG00000023254) #13	BARD1 (ENSXMAG00000023971) #12	ABCA12 (ENSXMAG00000015970) #11	pofut2 (ENSXMAG00000015956)	TUBA4A (ENSXMAG00000015955)	tuba8l5 (ENSXMAG00000015954)	ENSXMAG00000015953	ENSXMAG00000015942	ptprna (ENSXMAG00000015939)
NAME_4	ANCESTRAL SPECIES	32											ENSGT00940000158191.b	ENSGT00940000157406	ENSGT00940000160130	ENSGT00710000106813.A	ENSGT00530000065251	ENSGT00530000063688.a #22	ENSGT00940000156597.a.a ##26	ENSGT01030000234570.d.a.o #20	ENSGT00940000157192 #18	ENSGT00940000154695.d.a #17	ENSGT00940000157137 #16	ENSGT00720000108792.B #13	ENSGT00940000156532 #12	ENSGT00940000157295 #11	ENSGT00390000007989	ENSGT00950000183165.a.b	ENSGT00950000183165.b.a.e.b.d.a.a.a.b	ENSGT00950000183165.b.b.b.b.b	ENSGT00950000183165.b.a.e.b.d.a.a.a.a	ENSGT00940000167284	ENSGT00940000166954
Sheepshead minnow	MODERN SPECIES	316															ENSCVAG00000016579	ENSCVAG00000016568 #22	ENSCVAG00000016556 ##26	myl1 (ENSCVAG00000016478) #20	CPS1 (ENSCVAG00000016424) #18	ERBB4 (ENSCVAG00000016311) #17	IKZF2 (ENSCVAG00000016213) #16	vwc2l (ENSCVAG00000016170) #13	BARD1 (ENSCVAG00000016147) #12	ABCA12 (ENSCVAG00000016136) #11	pofut2 (ENSCVAG00000015944)	TUBA4A (ENSCVAG00000000406)	ENSCVAG00000015891	ENSCVAG00000015884	dnajb2 (ENSCVAG00000015878)	PTPRN (ENSCVAG00000015838)
Oryzias	ANCESTRAL SPECIES	10	ENSGT01010000222287.B.b.a.a.a	ENSGT00940000165278	ENSGT00940000158913	ENSGT00950000182832.B	ENSGT00530000063353.a.b.b	ENSGT00940000153259.a.b.b	ENSGT00940000160405	ENSGT00940000155238	ENSGT00950000183003.a.a.b.c.b	ENSGT00440000039314.a	ENSGT00940000161561	ENSGT00940000158191.b	ENSGT00940000157406	ENSGT00940000160130	ENSGT00710000106813.A	ENSGT00530000063688.a #22	ENSGT00770000121792	ENSGT00940000156597.a.a ##26	ENSGT01030000234570.d.a.o #20	ENSGT00940000157192 #18	ENSGT00940000154695.d.a #17	ENSGT00940000157137 #16	ENSGT00720000108792.B #13	ENSGT00940000156532 #12	ENSGT00940000157295 #11	ENSGT00390000007989	ENSGT00950000183165.a.a.b	ENSGT00950000183165.b.a.e.b.d.a.a.a.b.e.b	ENSGT00950000183165.b.a.e.b.d.a.a.a.a	ENSGT00940000166954	ENSGT00940000154095.b.b.a.b
Oryzias_b	ANCESTRAL SPECIES	10	ENSGT00950000183034.A.h	ENSGT00940000165278	ENSGT00940000158913	ENSGT00950000182832.B	ENSGT00530000063353.a.b.b	ENSGT00940000153259.a.b.b	ENSGT00940000160405	ENSGT00940000155238	ENSGT00950000183003.a.a.b.c.b	ENSGT00440000039314.a	ENSGT00940000161561	ENSGT00940000158191.b	ENSGT00940000157406	ENSGT00940000160130	ENSGT00710000106813.A	ENSGT00530000063688.a #22	ENSGT00770000121792	ENSGT00940000156597.a.a ##26	ENSGT01030000234570.d.a.o #20	ENSGT00940000157192 #18	ENSGT00940000154695.d.a #17	ENSGT00940000157137 #16	ENSGT00720000108792.B #13	ENSGT00940000156532 #12	ENSGT00940000157295 #11	ENSGT00390000007989	ENSGT00950000183165.a.a.b	ENSGT00950000183165.b.a.e.b.d.a.a.a.b.e.b	ENSGT00950000183165.b.a.e.b.d.a.a.a.a	ENSGT00940000166954	ENSGT00940000154095.b.b.a.b
Javanese ricefish	MODERN SPECIES	13	zgc:152951 (ENSOJAG00000004924)	ZNF654 (ENSOJAG00000004907)	ENSOJAG00000004894	pou1f1 (ENSOJAG00000004850)	chmp2ba (ENSOJAG00000004838)	ENSOJAG00000004830	edar (ENSOJAG00000004818)	SH3RF3 (ENSOJAG00000004797)	septin10 (ENSOJAG00000003925)	SOWAHC (ENSOJAG00000003732)	akap17a (ENSOJAG00000003616)	asmt (ENSOJAG00000003548)	ENSOJAG00000003528	znf148 (ENSOJAG00000024003)	slc12a8 (ENSOJAG00000023989)	ENSOJAG00000023983 #22	ENSOJAG00000023979 ##26	myl1 (ENSOJAG00000023978) #20	CPS1 (ENSOJAG00000023907) #18	ERBB4 (ENSOJAG00000023771) #17	IKZF2 (ENSOJAG00000023709) #16	vwc2l (ENSOJAG00000023705) #13	BARD1 (ENSOJAG00000023702) #12	ABCA12 (ENSOJAG00000023678) #11	pofut2 (ENSOJAG00000023650)	MPPED1 (ENSOJAG00000023646)	slco1d1 (ENSOJAG00000023608)	SLC2A13 (ENSOJAG00000023581)	DIP2A (ENSOJAG00000023414)	ENSOJAG00000023347	hycc2 (ENSOJAG00000023326)
Indian medaka	MODERN SPECIES	18	ZNF654 (ENSOMEG00000023383)	ENSOMEG00000023398	pou1f1 (ENSOMEG00000000631)	chmp2ba (ENSOMEG00000023423)	ENSOMEG00000023432	edar (ENSOMEG00000023466)	SH3RF3 (ENSOMEG00000023477)	septin10 (ENSOMEG00000023493)	SOWAHC (ENSOMEG00000023498)	akap17a (ENSOMEG00000023506)	asmt (ENSOMEG00000023515)	ENSOMEG00000023530	znf148 (ENSOMEG00000023546)	slc12a8 (ENSOMEG00000023566)	heg1 (ENSOMEG00000023574)	ENSOMEG00000023601 #22	ENSOMEG00000023611	ENSOMEG00000023645 ##26	myl1 (ENSOMEG00000001370) #20	CPS1 (ENSOMEG00000000010) #18	ERBB4 (ENSOMEG00000001386) #17	IKZF2 (ENSOMEG00000001392) #16	vwc2l (ENSOMEG00000001396) #13	BARD1 (ENSOMEG00000001402) #12	ENSOMEG00000001437 #11	pofut2 (ENSOMEG00000001447)	tuba8l5 (ENSOMEG00000001454)	TUBA4A (ENSOMEG00000001456)	ENSOMEG00000001459	ENSOMEG00000001465	ptprna (ENSOMEG00000001475)
Oryzias_a	ANCESTRAL SPECIES	45	ENSGT01010000222287.B.b.a.a.a	ENSGT00940000165278	ENSGT00940000158913	ENSGT00950000182832.B	ENSGT00530000063353.a.b.b	ENSGT00940000153259.a.b.b	ENSGT00940000160405	ENSGT00940000155238	ENSGT00950000183003.a.a.b.c.b	ENSGT00440000039314.a	ENSGT00940000161561	ENSGT00940000158191.b	ENSGT00940000157406	ENSGT00940000160130	ENSGT00710000106813.A	ENSGT00530000063688.a #22	ENSGT00940000156597.a.a ##26	ENSGT01030000234570.d.a.o #20	ENSGT00940000157192 #18	ENSGT00940000154695.d.a #17	ENSGT00940000157137 #16	ENSGT00720000108792.B #13	ENSGT00940000156532 #12	ENSGT00940000157295 #11	ENSGT00390000007989
Japanese Medaka HdrR	MODERN SPECIES	13	ZNF654 (ENSORLG00000015860)	ENSORLG00000015862	pou1f1 (ENSORLG00000015870)	chmp2ba (ENSORLG00000015878)	ENSORLG00000029056	edar (ENSORLG00000015897)	SH3RF3 (ENSORLG00000015907)	septin10 (ENSORLG00000015923)	SOWAHC (ENSORLG00000023792)	akap17a (ENSORLG00000015933)	asmt (ENSORLG00000015943)	ENSORLG00000026135	znf148 (ENSORLG00000015950)	slc12a8 (ENSORLG00000026774)	heg1 (ENSORLG00000023565)	ENSORLG00000025656 #22	ENSORLG00000027165 ##26	ENSORLG00000015970 ##26	myl1 (ENSORLG00000015981) #20	CPS1 (ENSORLG00000016011) #18	ERBB4 (ENSORLG00000016023) #17	IKZF2 (ENSORLG00000021961) #16	vwc2l (ENSORLG00000016037) #13	BARD1 (ENSORLG00000016051) #12	ABCA12 (ENSORLG00000016083) #11	ENSORLG00000026033	tuba8l5 (ENSORLG00000029189)	ENSORLG00000028339	dnajb2 (ENSORLG00000016120)	ptprna (ENSORLG00000016128)	desma (ENSORLG00000016133)
Chinese medaka	MODERN SPECIES	1111							ENSOSIG00000022675	ENSOSIG00000022678	ENSOSIG00000022686	septin10 (ENSOSIG00000022690)	SOWAHC (ENSOSIG00000022694)	akap17a (ENSOSIG00000022697)	asmt (ENSOSIG00000022703)	SOWAHC (ENSOSIG00000022705)	septin10 (ENSOSIG00000022735)	ENSOSIG00000008783 #22	slc12a8 (ENSOSIG00000008788)	ENSOSIG00000008799	ENSOSIG00000008801	ENSOSIG00000008803	myl1 (ENSOSIG00000008805) #20	CPS1 (ENSOSIG00000008819) #18	ERBB4 (ENSOSIG00000008851) #17	IKZF2 (ENSOSIG00000008997) #16	vwc2l (ENSOSIG00000008998) #13	BARD1 (ENSOSIG00000008999) #12	ABCA12 (ENSOSIG00000009001) #11	pofut2 (ENSOSIG00000009030)	ENSOSIG00000009052	desma (ENSOSIG00000009059)	TMEM198 (ENSOSIG00000009090)
Percomorphaceae_C	ANCESTRAL SPECIES	13	ENSGT00940000158913	ENSGT00950000182832.B	ENSGT00530000063353.a.b.b	ENSGT00940000168612	ENSGT00940000153259.a.b.b	ENSGT00940000160405	ENSGT00940000155238	ENSGT00950000183003.a.a.b.c.b	ENSGT00440000039314.a	ENSGT00940000161561	ENSGT00940000158191.b	ENSGT00940000157406	ENSGT00940000160130	ENSGT00710000106813.A	ENSGT00530000065251	ENSGT00530000063688.a #22	ENSGT00770000121792	ENSGT00940000156597.a.a ##26	ENSGT01030000234570.d.a.o #20	ENSGT00940000157192 #18	ENSGT00940000154695.d.a #17	ENSGT00940000157137 #16	ENSGT00720000108792.B #13	ENSGT00940000156532 #12	ENSGT00940000157295 #11	ENSGT00390000007989	ENSGT00390000007946.i.a	ENSGT00950000183165.a.a.b	ENSGT00950000183165.b.a.e.b.d.a.a.a.b	ENSGT00950000183165.b.a.e.b.d.a.a.a.a	ENSGT00940000160220
Percomorphaceae_D	ANCESTRAL SPECIES	12	ENSGT00940000158913	ENSGT00950000182832.B	ENSGT00530000063353.a.b.b	ENSGT00940000168612	ENSGT00940000153259.a.b.b	ENSGT00940000160405	ENSGT00940000155238	ENSGT00950000183003.a.a.b.c.b	ENSGT00440000039314.a	ENSGT00940000161561	ENSGT00940000158191.b	ENSGT00940000157406	ENSGT00940000160130	ENSGT00710000106813.A	ENSGT00530000065251	ENSGT00530000063688.a #22	ENSGT00940000156597.a.a ##26	ENSGT01030000234570.d.a.o #20	ENSGT00940000157192 #18	ENSGT00940000154695.d.a #17	ENSGT00940000157137 #16	ENSGT00720000108792.B #13	ENSGT00940000156532 #12	ENSGT00940000157295 #11	ENSGT00390000007989	ENSGT00390000007946.i.a	ENSGT00950000183165.a.a.b	ENSGT00950000183165.b.a.e.b.d.a.a.a.b	ENSGT00950000183165.b.a.e.b.d.a.a.a.a	ENSGT00940000160220	ENSGT00940000154095.b.b.a.b
Anabantaria	ANCESTRAL SPECIES	14	ENSGT00940000158913	ENSGT00950000182832.B	ENSGT00530000063353.a.b.b	ENSGT00940000168612	ENSGT00940000153259.a.b.b	ENSGT00940000160405	ENSGT00940000155238	ENSGT00950000183003.a.a.b.c.b	ENSGT00440000039314.a	ENSGT00940000161561	ENSGT00940000158191.b	ENSGT00940000157406	ENSGT00940000160130	ENSGT00710000106813.A	ENSGT00530000065251	ENSGT00530000063688.a #22	ENSGT00940000156597.a.a ##26	ENSGT01030000234570.d.a.o #20	ENSGT00940000157192 #18	ENSGT00940000154695.d.a #17	ENSGT00940000157137 #16	ENSGT00720000108792.B #13	ENSGT00940000156532 #12	ENSGT00940000157295 #11	ENSGT00390000007989	ENSGT00950000183165.a.a.b	ENSGT00950000183165.b.a.e.b.d.a.a.a.b	ENSGT00950000183165.b.a.e.b.d.a.a.a.a	ENSGT00940000160220	ENSGT00940000154095.b.b.a.b	ENSGT00940000155522.g.a
Anabantoidei	ANCESTRAL SPECIES	13	ENSGT00940000165278	ENSGT00940000158913	ENSGT00950000182832.B	ENSGT00530000063353.a.b.b	ENSGT00940000168612	ENSGT00940000153259.a.b.b	ENSGT00940000160405	ENSGT00940000155238	ENSGT00950000183003.a.a.b.c.b	ENSGT00440000039314.a	ENSGT00940000161561	ENSGT00940000158191.b	ENSGT00940000157406	ENSGT00940000160130	ENSGT00710000106813.A	ENSGT00530000063688.a #22	ENSGT00940000156597.a.a ##26	ENSGT01030000234570.d.a.o #20	ENSGT00940000157192 #18	ENSGT00940000154695.d.a #17	ENSGT00940000157137 #16	ENSGT00720000108792.B #13	ENSGT00940000156532 #12	ENSGT00940000157295 #11	ENSGT00390000007989	ENSGT00950000183165.a.a.b	ENSGT00950000183165.b.a.e.b.d.a.a.a.b	ENSGT00950000183165.b.a.e.b.d.a.a.a.a	ENSGT00940000160220	ENSGT00940000154095.b.b.a.b	ENSGT00940000155522.g.a
Climbing perch	MODERN SPECIES	12	ENSATEG00000001176	POU1F1 (ENSATEG00000001156)	CHMP2B (ENSATEG00000001129)	VGLL3 (ENSATEG00000001127)	ENSATEG00000001117	edar (ENSATEG00000001046)	SH3RF3 (ENSATEG00000001037)	septin10 (ENSATEG00000001021)	SOWAHC (ENSATEG00000001002)	akap17a (ENSATEG00000000994)	asmt (ENSATEG00000000960)	ENSATEG00000000955	znf148 (ENSATEG00000000928)	slc12a8 (ENSATEG00000000857)	heg1 (ENSATEG00000000847)	ENSATEG00000000828 #22	ENSATEG00000026644 ##26	myl1 (ENSATEG00000000643) #20	ENSATEG00000000630	CPS1 (ENSATEG00000000462) #18	ERBB4 (ENSATEG00000000455) #17	IKZF2 (ENSATEG00000000447) #16	vwc2l (ENSATEG00000000428) #13	BARD1 (ENSATEG00000000424) #12	ABCA12 (ENSATEG00000000040) #11	pofut2 (ENSATEG00000021612)	TUBA4A (ENSATEG00000021606)	tuba8l5 (ENSATEG00000021555)	DNAJB2 (ENSATEG00000028623)	ptprna (ENSATEG00000021498)	desma (ENSATEG00000021476)
Siamese fighting fish	MODERN SPECIES	11	ENSBSLG00000025537	pou1f1 (ENSBSLG00000025516)	chmp2ba (ENSBSLG00000025499)	VGLL3 (ENSBSLG00000025493)	edar (ENSBSLG00000025448)	ENSBSLG00000025410	SH3RF3 (ENSBSLG00000025376)	septin10 (ENSBSLG00000025330)	SOWAHC (ENSBSLG00000025328)	akap17a (ENSBSLG00000025327)	asmt (ENSBSLG00000025326)	ENSBSLG00000025325	znf148 (ENSBSLG00000025324)	slc12a8 (ENSBSLG00000025320)	heg1 (ENSBSLG00000025315)	ENSBSLG00000025314 #22	ENSBSLG00000025312 ##26	ENSBSLG00000025311 ##26	myl1 (ENSBSLG00000025310) #20	CPS1 (ENSBSLG00000025087) #18	ENSBSLG00000025031	ERBB4 (ENSBSLG00000021569) #17	IKZF2 (ENSBSLG00000021076) #16	vwc2l (ENSBSLG00000021033) #13	BARD1 (ENSBSLG00000021003) #12	ABCA12 (ENSBSLG00000020049) #11	ENSBSLG00000020034	ENSBSLG00000020024	pofut2 (ENSBSLG00000019855)	TUBA4A (ENSBSLG00000019829)	ENSBSLG00000019793
Zig-zag eel	MODERN SPECIES	13	pou1f1 (ENSMAMG00000018376)	chmp2ba (ENSMAMG00000018388)	VGLL3 (ENSMAMG00000018404)	ENSMAMG00000018417	edar (ENSMAMG00000027068)	SH3RF3 (ENSMAMG00000018464)	septin10 (ENSMAMG00000018477)	SOWAHC (ENSMAMG00000018511)	akap17a (ENSMAMG00000018525)	asmt (ENSMAMG00000018532)	ENSMAMG00000026727	znf148 (ENSMAMG00000018560)	slc12a8 (ENSMAMG00000018580)	heg1 (ENSMAMG00000018608)	ENSMAMG00000026411	ENSMAMG00000018637 #22	ENSMAMG00000024867	ENSMAMG00000018645 ##26	ENSMAMG00000018654 ##26	myl1 (ENSMAMG00000018692) #20	CPS1 (ENSMAMG00000018705) #18	ERBB4 (ENSMAMG00000018854) #17	IKZF2 (ENSMAMG00000018911) #16	ENSMAMG00000025019	vwc2l (ENSMAMG00000018923) #13	BARD1 (ENSMAMG00000018939) #12	ENSMAMG00000018956 #11	pofut2 (ENSMAMG00000018998)	TUBA4A (ENSMAMG00000019003)	tuba8l5 (ENSMAMG00000026124)	ENSMAMG00000027081
Carangaria	ANCESTRAL SPECIES	12	ENSGT00940000158913	ENSGT00950000182832.B	ENSGT00530000063353.a.b.b	ENSGT00940000168612	ENSGT00940000153259.a.b.b	ENSGT00940000160405	ENSGT00940000155238	ENSGT00950000183003.a.a.b.c.b	ENSGT00440000039314.a	ENSGT00940000161561	ENSGT00940000158191.b	ENSGT00940000157406	ENSGT00940000160130	ENSGT00710000106813.A	ENSGT00530000065251	ENSGT00530000063688.a #22	ENSGT00940000156597.a.a ##26	ENSGT01030000234570.d.a.o #20	ENSGT00940000157192 #18	ENSGT00940000154695.d.a #17	ENSGT00940000157137 #16	ENSGT00720000108792.B #13	ENSGT00940000156532 #12	ENSGT00940000157295 #11	ENSGT00390000007989	ENSGT00390000007946.i.a	ENSGT00950000183165.a.a.b	ENSGT00950000183165.b.a.e.b.d.a.a.a.b	ENSGT00950000183165.b.a.e.b.d.a.a.a.a	ENSGT00940000160220	ENSGT00940000154095.b.b.a.b
Pleuronectoidei	ANCESTRAL SPECIES	9	ENSGT00940000158913	ENSGT00950000182832.B	ENSGT00530000063353.a.b.b	ENSGT00940000168612	ENSGT00940000153259.a.b.b	ENSGT00940000160405	ENSGT00940000155238	ENSGT00950000183003.a.a.b.c.b	ENSGT00440000039314.a	ENSGT00940000161561	ENSGT00940000158191.b	ENSGT00940000157406	ENSGT00940000160130	ENSGT00710000106813.A	ENSGT00530000065251	ENSGT00530000063688.a #22	ENSGT00940000156597.a.a ##26	ENSGT01030000234570.d.a.o #20	ENSGT00940000157192 #18	ENSGT00940000154695.d.a #17	ENSGT00940000157137 #16	ENSGT00720000108792.B #13	ENSGT00940000156532 #12	ENSGT00940000157295 #11	ENSGT00390000007989	ENSGT00950000183165.a.a.b	ENSGT00950000183165.b.a.e.b.d.a.a.a.b	ENSGT00950000183165.b.a.e.b.d.a.a.a.a	ENSGT00940000160220	ENSGT00940000154095.b.b.a.b	ENSGT00940000155522.g.a
Turbot	MODERN SPECIES	5	CHMP2B (ENSSMAG00000008046)	VGLL3 (ENSSMAG00000008049)	ENSSMAG00000008065	edar (ENSSMAG00000008077)	ENSSMAG00000026706	ENSSMAG00000034504	septin10 (ENSSMAG00000008131)	SOWAHC (ENSSMAG00000034691)	akap17a (ENSSMAG00000008159)	asmt (ENSSMAG00000008163)	ENSSMAG00000032586	znf148 (ENSSMAG00000008252)	slc12a8 (ENSSMAG00000008272)	heg1 (ENSSMAG00000008321)	ENSSMAG00000025937	ENSSMAG00000008354 #22	ENSSMAG00000008391 ##26	myl1 (ENSSMAG00000008470) #20	CPS1 (ENSSMAG00000008581) #18	ERBB4 (ENSSMAG00000008828) #17	IKZF2 (ENSSMAG00000009034) #16	vwc2l (ENSSMAG00000009061) #13	BARD1 (ENSSMAG00000009076) #12	ABCA12 (ENSSMAG00000009128) #11	pofut2 (ENSSMAG00000009261)	TUBA4A (ENSSMAG00000037271)	tuba8l5 (ENSSMAG00000035351)	DNAJB2 (ENSSMAG00000009340)	ptprna (ENSSMAG00000009378)	desma (ENSSMAG00000009407)	ENSSMAG00000009463
Carangaria_A	ANCESTRAL SPECIES	11	ENSGT00940000158913	ENSGT00950000182832.B	ENSGT00530000063353.a.b.b	ENSGT00940000168612	ENSGT00940000153259.a.b.b	ENSGT00940000160405	ENSGT00940000155238	ENSGT00950000183003.a.a.b.c.b	ENSGT00440000039314.a	ENSGT00940000161561	ENSGT00940000158191.b	ENSGT00940000157406	ENSGT00940000160130	ENSGT00710000106813.A	ENSGT00970000197603	ENSGT00530000063688.a #22	ENSGT00940000156597.a.a ##26	ENSGT01030000234570.d.a.o #20	ENSGT00940000157192 #18	ENSGT00940000154695.d.a #17	ENSGT00940000157137 #16	ENSGT00720000108792.B #13	ENSGT00940000156532 #12	ENSGT00940000157295 #11	ENSGT00390000007989	ENSGT00390000007946.i.a	ENSGT00950000183165.a.a.b	ENSGT00950000183165.b.a.e.b.d.a.a.a.b	ENSGT00950000183165.b.a.e.b.d.a.a.a.a	ENSGT00940000160220	ENSGT00940000154095.b.b.a.b
Seriola	ANCESTRAL SPECIES	6	ENSGT01010000222287.B.b.a.a.a	ENSGT00940000158913	ENSGT00950000182832.B	ENSGT00530000063353.a.b.b	ENSGT00940000168612	ENSGT00940000153259.a.b.b	ENSGT00940000160405	ENSGT00940000155238	ENSGT00950000183003.a.a.b.c.b	ENSGT00440000039314.a	ENSGT00940000161561	ENSGT00940000158191.b	ENSGT00940000157406	ENSGT00940000160130	ENSGT00710000106813.A	ENSGT00530000063688.a #22	ENSGT00940000156597.a.a ##26	ENSGT01030000234570.d.a.o #20	ENSGT00940000157192 #18	ENSGT00940000154695.d.a #17	ENSGT00940000157137 #16	ENSGT00720000108792.B #13	ENSGT00940000156532 #12	ENSGT00940000157295 #11	ENSGT00390000007989	ENSGT00390000007946.i.a	ENSGT00950000183165.a.a.b	ENSGT00950000183165.b.a.e.b.d.a.a.a.b	ENSGT00950000183165.b.a.e.b.d.a.a.a.a	ENSGT00940000160220	ENSGT00940000154095.b.b.a.b
Greater amberjack	MODERN SPECIES	21	HTR1F (ENSSDUG00000013721)	pou1f1 (ENSSDUG00000013726)	chmp2ba (ENSSDUG00000013738)	VGLL3 (ENSSDUG00000013757)	ENSSDUG00000013772	edar (ENSSDUG00000013806)	SH3RF3 (ENSSDUG00000013834)	septin10 (ENSSDUG00000013879)	SOWAHC (ENSSDUG00000013887)	akap17a (ENSSDUG00000013903)	asmt (ENSSDUG00000013918)	ENSSDUG00000013971	znf148 (ENSSDUG00000013986)	slc12a8 (ENSSDUG00000014021)	ENSSDUG00000014084	ENSSDUG00000014096 #22	ENSSDUG00000014138 ##26	myl1 (ENSSDUG00000014209) #20	CPS1 (ENSSDUG00000014241) #18	ERBB4 (ENSSDUG00000014369) #17	IKZF2 (ENSSDUG00000014466) #16	vwc2l (ENSSDUG00000014480) #13	BARD1 (ENSSDUG00000014493) #12	ABCA12 (ENSSDUG00000014541) #11	pofut2 (ENSSDUG00000014667)	ENSSDUG00000014686	tuba8l2 (ENSSDUG00000014773)	ENSSDUG00000014783	DNAJB2 (ENSSDUG00000014791)	ptprna (ENSSDUG00000014837)	desma (ENSSDUG00000014903)
Yellowtail amberjack	MODERN SPECIES	2960	ZNF654 (ENSSLDG00000024059)	HTR1F (ENSSLDG00000024089)	pou1f1 (ENSSLDG00000024096)	chmp2ba (ENSSLDG00000024106)	VGLL3 (ENSSLDG00000024118)	ENSSLDG00000024126	edar (ENSSLDG00000024145)	SH3RF3 (ENSSLDG00000024178)	septin10 (ENSSLDG00000024200)	SOWAHC (ENSSLDG00000024221)	akap17a (ENSSLDG00000024239)	ENSSLDG00000024339	znf148 (ENSSLDG00000024351)	slc12a8 (ENSSLDG00000024373)	heg1 (ENSSLDG00000024397)	ENSSLDG00000024413 #22	ENSSLDG00000024425 ##26	myl1 (ENSSLDG00000024447) #20	CPS1 (ENSSLDG00000024467) #18	ERBB4 (ENSSLDG00000024555) #17	IKZF2 (ENSSLDG00000024592) #16	vwc2l (ENSSLDG00000024604) #13
Barramundi perch	MODERN SPECIES	389							septin10 (ENSLCAG00010021086)	ENSLCAG00010021090	akap17a (ENSLCAG00010021096)	asmt (ENSLCAG00010021102)	ENSLCAG00010021107	znf148 (ENSLCAG00010021114)	slc12a8 (ENSLCAG00010021120)	ENSLCAG00010021129	ENSLCAG00010021135	ENSLCAG00010021139 #22	ENSLCAG00010021143 ##26	myl1 (ENSLCAG00010021146) #20	ENSLCAG00010021150 ##26	CPS1 (ENSLCAG00010021183) #18
Eupercaria	ANCESTRAL SPECIES	25	ENSGT00940000158913	ENSGT00950000182832.B	ENSGT00530000063353.a.b.b	ENSGT00940000168612	ENSGT00940000153259.a.b.b	ENSGT00940000160405	ENSGT00940000155238	ENSGT00950000183003.a.a.b.c.b	ENSGT00440000039314.a	ENSGT00940000161561	ENSGT00940000158191.b	ENSGT00940000157406	ENSGT00940000160130	ENSGT00710000106813.A	ENSGT00530000065251	ENSGT00530000063688.a #22	ENSGT00770000121792	ENSGT00940000156597.a.a ##26	ENSGT01030000234570.d.a.o #20	ENSGT00940000157192 #18	ENSGT00940000154695.d.a #17	ENSGT00940000157137 #16	ENSGT00720000108792.B #13	ENSGT00940000156532 #12	ENSGT00940000157295 #11	ENSGT00390000007989	ENSGT00390000007946.i.a	ENSGT00950000183165.a.a.b	ENSGT00950000183165.b.a.e.b.d.a.a.a.b	ENSGT00950000183165.b.a.e.b.d.a.a.a.a	ENSGT00940000160220
Tetraodontidae	ANCESTRAL SPECIES		ENSGT00940000158913	ENSGT00950000182832.B	ENSGT00530000063353.a.b.b	ENSGT00940000168612	ENSGT00940000153259.a.b.b	ENSGT00940000160405	ENSGT00940000155238	ENSGT00950000183003.a.a.b.c.b	ENSGT00440000039314.a	ENSGT00940000161561	ENSGT00940000158191.b	ENSGT00940000157406	ENSGT00940000160130	ENSGT00710000106813.A	ENSGT00530000065251	ENSGT00530000063688.a #22	ENSGT00940000156597.a.a ##26	ENSGT01030000234570.d.a.o #20	ENSGT00940000157192 #18	ENSGT00940000154695.d.a #17	ENSGT00940000157137 #16	ENSGT00720000108792.B #13	ENSGT00940000156532 #12	ENSGT00940000157295 #11	ENSGT00390000007989	ENSGT00390000007946.i.a	ENSGT00950000183165.a.a.b	ENSGT00950000183165.b.a.e.b.d.a.a.a.b	ENSGT00950000183165.b.a.e.b.d.a.a.a.a	ENSGT00940000160220	ENSGT00940000154095.b.b.a.b
Fugu	MODERN SPECIES		pou1f1 (ENSTRUG00000003476)	chmp2ba (ENSTRUG00000003960)	VGLL3 (ENSTRUG00000004178)	ENSTRUG00000004319	edar (ENSTRUG00000004588)	SH3RF3 (ENSTRUG00000004966)	septin10 (ENSTRUG00000005559)	SOWAHC (ENSTRUG00000005734)	akap17a (ENSTRUG00000005761)	asmt (ENSTRUG00000005861)	ENSTRUG00000006006	znf148 (ENSTRUG00000021738)	slc12a8 (ENSTRUG00000006270)	heg1 (ENSTRUG00000006637)	ENSTRUG00000032795	ENSTRUG00000020723 #22	ENSTRUG00000019720 ##26	ENSTRUG00000029278 ##26	ENSTRUG00000006821 ##26	myl1 (ENSTRUG00000006953) #20	CPS1 (ENSTRUG00000007058) #18	ERBB4 (ENSTRUG00000008503) #17	IKZF2 (ENSTRUG00000014740) #16	vwc2l (ENSTRUG00000014735) #13	BARD1 (ENSTRUG00000014666) #12	ABCA12 (ENSTRUG00000014299) #11	pofut2 (ENSTRUG00000014241)	DHDH (ENSTRUG00000014194)	TUBA4A (ENSTRUG00000022357)	tuba8l3 (ENSTRUG00000024775)	DNAJB2 (ENSTRUG00000023546)
Eupecaria_A	ANCESTRAL SPECIES	24	ENSGT00940000158913	ENSGT00950000182832.B	ENSGT00530000063353.a.b.b	ENSGT00940000168612	ENSGT00940000153259.a.b.b	ENSGT00940000160405	ENSGT00940000155238	ENSGT00950000183003.a.a.b.c.b	ENSGT00440000039314.a	ENSGT00940000161561	ENSGT00940000158191.b	ENSGT00940000157406	ENSGT00940000160130	ENSGT00710000106813.A	ENSGT00530000065251	ENSGT00530000063688.a #22	ENSGT00770000121792	ENSGT00940000156597.a.a ##26	ENSGT01030000234570.d.a.o #20	ENSGT00940000157192 #18	ENSGT00940000154695.d.a #17	ENSGT00940000157137 #16	ENSGT00720000108792.B #13	ENSGT00940000156532 #12	ENSGT00940000157295 #11	ENSGT00390000007989	ENSGT00390000007946.i.a	ENSGT00950000183165.a.a.b	ENSGT00950000183165.b.a.e.b.d.a.a.a.b	ENSGT00950000183165.b.a.e.b.d.a.a.a.a	ENSGT00940000160220
Ballan wrasse	MODERN SPECIES	80					ENSLBEG00000001623	edar (ENSLBEG00000001674)	SH3RF3 (ENSLBEG00000001693)	septin10 (ENSLBEG00000001725)	SOWAHC (ENSLBEG00000001780)	akap17a (ENSLBEG00000001841)	asmt (ENSLBEG00000001868)	ENSLBEG00000001914	znf148 (ENSLBEG00000001953)	slc12a8 (ENSLBEG00000002062)	heg1 (ENSLBEG00000002092)	ENSLBEG00000002108 #22	ENSLBEG00000002125	ENSLBEG00000002169 ##26	myl1 (ENSLBEG00000002248) #20	CPS1 (ENSLBEG00000002329) #18	ERBB4 (ENSLBEG00000002429) #17	IKZF2 (ENSLBEG00000002545) #16	vwc2l (ENSLBEG00000002560) #13	BARD1 (ENSLBEG00000002588) #12	ABCA12 (ENSLBEG00000002654) #11	pofut2 (ENSLBEG00000002774)	DHDH (ENSLBEG00000002826)	TUBA4A (ENSLBEG00000002847)	tuba8l5 (ENSLBEG00000002892)	ENSLBEG00000003251	DNAJB2 (ENSLBEG00000003275)
Eupecaria_B	ANCESTRAL SPECIES	24	ENSGT00940000158913	ENSGT00950000182832.B	ENSGT00530000063353.a.b.b	ENSGT00940000168612	ENSGT00940000153259.a.b.b	ENSGT00940000160405	ENSGT00940000155238	ENSGT00950000183003.a.a.b.c.b	ENSGT00440000039314.a	ENSGT00940000161561	ENSGT00940000158191.b	ENSGT00940000157406	ENSGT00940000160130	ENSGT00710000106813.A	ENSGT00530000065251	ENSGT00530000063688.a #22	ENSGT00770000121792	ENSGT00940000156597.a.a ##26	ENSGT01030000234570.d.a.o #20	ENSGT00940000157192 #18	ENSGT00940000154695.d.a #17	ENSGT00940000157137 #16	ENSGT00720000108792.B #13	ENSGT00940000156532 #12	ENSGT00940000157295 #11	ENSGT00390000007989	ENSGT00390000007946.i.a	ENSGT00950000183165.a.a.b	ENSGT00950000183165.b.a.e.b.d.a.a.a.b	ENSGT00950000183165.b.a.e.b.d.a.a.a.a	ENSGT00940000160220
Perciformes	ANCESTRAL SPECIES	23	ENSGT00940000158913	ENSGT00950000182832.B	ENSGT00530000063353.a.b.b	ENSGT00940000168612	ENSGT00940000153259.a.b.b	ENSGT00940000160405	ENSGT00940000155238	ENSGT00950000183003.a.a.b.c.b	ENSGT00440000039314.a	ENSGT00940000161561	ENSGT00940000158191.b	ENSGT00940000157406	ENSGT00940000160130	ENSGT00710000106813.A	ENSGT00530000065251	ENSGT00530000063688.a #22	ENSGT00940000156597.a.a ##26	ENSGT01030000234570.d.a.o #20	ENSGT00940000157192 #18	ENSGT00940000154695.d.a #17	ENSGT00940000157137 #16	ENSGT00720000108792.B #13	ENSGT00940000156532 #12	ENSGT00940000157295 #11	ENSGT00390000007989	ENSGT00390000007946.i.a	ENSGT00950000183165.a.a.b	ENSGT00950000183165.b.a.e.b.d.a.a.a.b	ENSGT00950000183165.b.a.e.b.d.a.a.a.a	ENSGT00940000160220	ENSGT00940000154095.b.b.a.b
Perciformes_a	ANCESTRAL SPECIES	23	ENSGT00940000158913	ENSGT00950000182832.B	ENSGT00530000063353.a.b.b	ENSGT00940000168612	ENSGT00940000153259.a.b.b	ENSGT00940000166892	ENSGT00940000155238	ENSGT00950000183003.a.a.b.c.b	ENSGT00440000039314.a	ENSGT00940000161561	ENSGT00940000158191.b	ENSGT00940000157406	ENSGT00940000160130	ENSGT00710000106813.A	ENSGT00530000065251	ENSGT00530000063688.a #22	ENSGT00940000156597.a.a ##26	ENSGT01030000234570.d.a.o #20	ENSGT00940000157192 #18	ENSGT00940000154695.d.a #17	ENSGT00940000157137 #16	ENSGT00720000108792.B #13	ENSGT00940000156532 #12	ENSGT00940000157295 #11	ENSGT00390000007989	ENSGT00950000183165.a.a.b	ENSGT00950000183165.b.a.e.b.d.a.a.a.b	ENSGT00950000183165.b.a.e.b.d.a.a.a.a	ENSGT00940000160220	ENSGT00940000154205	ENSGT00940000154095.b.b.a.b
Pike perch	MODERN SPECIES	57	chmp2ba (ENSSLUG00000024739)	ENSSLUG00000024736	VGLL3 (ENSSLUG00000024734)	ENSSLUG00000024729	edar (ENSSLUG00000024727)	ENSSLUG00000024726	septin10 (ENSSLUG00000024439)	SOWAHC (ENSSLUG00000024411)	akap17a (ENSSLUG00000024405)	asmt (ENSSLUG00000024401)	ENSSLUG00000024396	znf148 (ENSSLUG00000024394)	slc12a8 (ENSSLUG00000024382)	heg1 (ENSSLUG00000024373)	ENSSLUG00000024369	ENSSLUG00000024366 #22	ENSSLUG00000024362	ENSSLUG00000024346 ##26	myl1 (ENSSLUG00000024342) #20	CPS1 (ENSSLUG00000024297) #18
Channel bull blenny	MODERN SPECIES	13	pou1f1 (ENSCGOG00000010880)	chmp2ba (ENSCGOG00000010898)	VGLL3 (ENSCGOG00000010902)	ENSCGOG00000010905	edar (ENSCGOG00000010906)	ENSCGOG00000010911	septin10 (ENSCGOG00000010996)	SOWAHC (ENSCGOG00000015342)	akap17a (ENSCGOG00000015346)	asmt (ENSCGOG00000015354)	ENSCGOG00000015360	znf148 (ENSCGOG00000015362)	slc12a8 (ENSCGOG00000015369)	heg1 (ENSCGOG00000015387)	ENSCGOG00000015395	ENSCGOG00000015398 #22	ENSCGOG00000015403 ##26	ENSCGOG00000015408 ##26	myl1 (ENSCGOG00000015409) #20	CPS1 (ENSCGOG00000015493) #18	ERBB4 (ENSCGOG00000018283) #17	IKZF2 (ENSCGOG00000018289) #16	vwc2l (ENSCGOG00000018295) #13	BARD1 (ENSCGOG00000018298) #12	ENSCGOG00000018299 #11	pofut2 (ENSCGOG00000018312)	ENSCGOG00000018465	TUBA4A (ENSCGOG00000018472)	tuba8l5 (ENSCGOG00000013056)	ENSCGOG00000013158	DNAJB2 (ENSCGOG00000013271)
Eupecaria_C	ANCESTRAL SPECIES	24	ENSGT00940000158913	ENSGT00950000182832.B	ENSGT00530000063353.a.b.b	ENSGT00940000168612	ENSGT00940000153259.a.b.b	ENSGT00940000160405	ENSGT00940000155238	ENSGT00950000183003.a.a.b.c.b	ENSGT00440000039314.a	ENSGT00940000161561	ENSGT00940000158191.b	ENSGT00940000157406	ENSGT00940000160130	ENSGT00710000106813.A	ENSGT00530000065251	ENSGT00530000063688.a #22	ENSGT00770000121792	ENSGT00940000156597.a.a ##26	ENSGT01030000234570.d.a.o #20	ENSGT00940000157192 #18	ENSGT00940000154695.d.a #17	ENSGT00940000157137 #16	ENSGT00720000108792.B #13	ENSGT00940000156532 #12	ENSGT00940000157295 #11	ENSGT00390000007989	ENSGT00390000007946.i.a	ENSGT00950000183165.a.a.b	ENSGT00950000183165.b.a.e.b.d.a.a.a.b	ENSGT00950000183165.b.a.e.b.d.a.a.a.a	ENSGT00940000160220
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	24	ENSGT00940000158913	ENSGT00950000182832.B	ENSGT00530000063353.a.b.b	ENSGT00940000168612	ENSGT00940000153259.a.b.b	ENSGT00940000160405	ENSGT00940000155238	ENSGT00950000183003.a.a.b.c.b	ENSGT00440000039314.a	ENSGT00940000161561	ENSGT00940000158191.b	ENSGT00940000157406	ENSGT00940000160130	ENSGT00710000106813.A	ENSGT00530000065251	ENSGT00530000063688.a #22	ENSGT00770000121792	ENSGT00940000156597.a.a ##26	ENSGT01030000234570.d.a.o #20	ENSGT00940000157192 #18	ENSGT00940000154695.d.a #17	ENSGT00940000157137 #16	ENSGT00720000108792.B #13	ENSGT00940000156532 #12	ENSGT00940000157295 #11	ENSGT00390000007989	ENSGT00950000183165.a.a.b	ENSGT00950000183165.a.b	ENSGT00950000183165.b.a.e.b.d.a.a.a.b	ENSGT00950000183165.b.a.e.b.d.a.a.a.a	ENSGT00940000160220
European seabass	MODERN SPECIES	5	POU1F1 (ENSDLAG00005030651)	CHMP2B (ENSDLAG00005033134)	VGLL3 (ENSDLAG00005001053)	ENSDLAG00005001059	edar (ENSDLAG00005001070)	SH3RF3 (ENSDLAG00005001083)	septin10 (ENSDLAG00005001151)	SOWAHC (ENSDLAG00005002166)	akap17a (ENSDLAG00005002170)	asmt (ENSDLAG00005002177)	ENSDLAG00005028574	znf148 (ENSDLAG00005029346)	slc12a8 (ENSDLAG00005002202)	heg1 (ENSDLAG00005032478)	ENSDLAG00005002261	ENSDLAG00005029565 #22	ENSDLAG00005002268 ##26	myl1 (ENSDLAG00005002632) #20	CPS1 (ENSDLAG00005003390) #18	ERBB4 (ENSDLAG00005006224) #17	IKZF2 (ENSDLAG00005008275) #16	vwc2l (ENSDLAG00005029709) #13	ENSDLAG00005033668	BARD1 (ENSDLAG00005008303) #12	ENSDLAG00005008321	ENSDLAG00005008372 #11	pofut2 (ENSDLAG00005009262)	TUBA4A (ENSDLAG00005028556)	tuba8l5 (ENSDLAG00005031330)	ENSDLAG00005032431	DNAJB2 (ENSDLAG00005009375)
Large yellow croaker	MODERN SPECIES	490	pou1f1 (ENSLCRG00005015797)	chmp2ba (ENSLCRG00005015799)	VGLL3 (ENSLCRG00005015800)	ENSLCRG00005015802	edar (ENSLCRG00005015805)	SH3RF3 (ENSLCRG00005015807)	septin10 (ENSLCRG00005015817)	SOWAHC (ENSLCRG00005016943)	akap17a (ENSLCRG00005016944)	asmt (ENSLCRG00005016950)	ENSLCRG00005016951	ENSLCRG00005016952	znf148 (ENSLCRG00005016953)	slc12a8 (ENSLCRG00005016955)	ENSLCRG00005016956	ENSLCRG00005016957 #22	ENSLCRG00005016959	ENSLCRG00005016960 ##26	ENSLCRG00005016961 ##26	myl1 (ENSLCRG00005016962) #20	CPS1 (ENSLCRG00005016975) #18	ERBB4 (ENSLCRG00005017119) #17	IKZF2 (ENSLCRG00005021694) #16	vwc2l (ENSLCRG00005021700) #13	BARD1 (ENSLCRG00005021702) #12	ABCA12 (ENSLCRG00005021725) #11	pofut2 (ENSLCRG00005021846)	ENSLCRG00005021848	ENSLCRG00005021851	ENSLCRG00005021852	ptprna (ENSLCRG00005021854)
Gilthead seabream	MODERN SPECIES	23	ALS2 (ENSSAUG00010016679)	FZD7 (ENSSAUG00010016676)	ENSSAUG00010016672	edar (ENSSAUG00010016667)	SH3RF3 (ENSSAUG00010016663)	septin10 (ENSSAUG00010015128)	SOWAHC (ENSSAUG00010015113)	akap17a (ENSSAUG00010015110)	asmt (ENSSAUG00010015107)	ENSSAUG00010015105	znf148 (ENSSAUG00010015104)	slc12a8 (ENSSAUG00010015099)	heg1 (ENSSAUG00010015096)	ENSSAUG00010015092	ENSSAUG00010015091	ENSSAUG00010015086 #22	ENSSAUG00010015084 ##26	myl1 (ENSSAUG00010015082) #20	CPS1 (ENSSAUG00010010140) #18	ERBB4 (ENSSAUG00010004938) #17	IKZF2 (ENSSAUG00010004795) #16	vwc2l (ENSSAUG00010004794) #13	BARD1 (ENSSAUG00010004792) #12	ABCA12 (ENSSAUG00010004747) #11	pofut2 (ENSSAUG00010004246)	DHDH (ENSSAUG00010004096)	TUBA4A (ENSSAUG00010027680)	tuba8l5 (ENSSAUG00010027679)	ENSSAUG00010027678	ENSSAUG00010027677	ptprna (ENSSAUG00010027671)
Pinecone sodierfish	MODERN SPECIES	13	ENSMMDG00005024011	RDX (ENSMMDG00005023952)	ENSMMDG00005023938	ENSMMDG00005023937	ENSMMDG00005023930	ENSMMDG00005023921	ENSMMDG00005023912	akap17a (ENSMMDG00005023906)	asmt (ENSMMDG00005023902)	ENSMMDG00005023899	znf148 (ENSMMDG00005023895)	slc12a8 (ENSMMDG00005023892)	heg1 (ENSMMDG00005023888)	ENSMMDG00005023885	ENSMMDG00005023884	ENSMMDG00005023881 #22	ENSMMDG00005023880	ENSMMDG00005023878 ##26	myl1 (ENSMMDG00005023877) #20	CPS1 (ENSMMDG00005021634) #18	ERBB4 (ENSMMDG00005021557) #17	IKZF2 (ENSMMDG00005021530) #16	vwc2l (ENSMMDG00005021520) #13	BARD1 (ENSMMDG00005021515) #12	ABCA12 (ENSMMDG00005021510) #11	pofut2 (ENSMMDG00005021500)	DHDH (ENSMMDG00005021497)	MYO1B (ENSMMDG00005021075)	BZW1 (ENSMMDG00005021044)	ENSMMDG00005021037	ENSMMDG00005021036
Cod	MODERN SPECIES	12	pou1f1 (ENSGMOG00000000489)	VGLL3 (ENSGMOG00000023988)	ENSGMOG00000000433	edar (ENSGMOG00000000404)	chmp2ba (ENSGMOG00000000475)	SH3RF3 (ENSGMOG00000028170)	septin10 (ENSGMOG00000000391)	SOWAHC (ENSGMOG00000000370)	akap17a (ENSGMOG00000000362)	asmt (ENSGMOG00000000351)	znf148 (ENSGMOG00000000320)	slc12a8 (ENSGMOG00000000303)	heg1 (ENSGMOG00000000286)	ENSGMOG00000031006	ENSGMOG00000019761	ENSGMOG00000034415 #22	ENSGMOG00000035530 ##26	myl1 (ENSGMOG00000000267) #20	CPS1 (ENSGMOG00000000243) #18	ENSGMOG00000033768	ERBB4 (ENSGMOG00000000227) #17	IKZF2 (ENSGMOG00000033404) #16	vwc2l (ENSGMOG00000012842) #13	BARD1 (ENSGMOG00000027836) #12	ABCA12 (ENSGMOG00000012822) #11	pofut2 (ENSGMOG00000012820)	ENSGMOG00000002472	ENSGMOG00000029204	ENSGMOG00000002399	ENSGMOG00000002379	ENSGMOG00000002328
Protacanthopterygii	ANCESTRAL SPECIES	18													ENSGT00940000160130	ENSGT00710000106813.A	ENSGT00530000065251	ENSGT00530000063688.a #22	ENSGT00770000121792	ENSGT00940000156597.a.a ##26	ENSGT01030000234570.d.a.o #20	ENSGT00940000157192 #18	ENSGT00940000154695.d.a #17	ENSGT00940000157137 #16	ENSGT00720000108792.B #13	ENSGT00940000156532 #12	ENSGT00940000157295 #11	ENSGT00390000007989	ENSGT00940000155752	ENSGT00390000007946.i.a	ENSGT00390000012561.b.pb.a	ENSGT00940000157521.a.a	ENSGT00940000155984.i.a.a
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	382	ENSGT01100000263532.A.a.a.b.b.a.a.a	ENSGT01100000263532.A.a.a.b.b.a.b	ENSGT01100000263532.A.a.a.a.b.a.a	ENSGT01100000263523.G.a.b.b	ENSGT01100000263523.J	ENSGT01100000263523.E	ENSGT01100000263532.C.c.b.o.b.a	ENSGT00390000008796.c	ENSGT00940000164835.d	ENSGT00930000151029.i.a.a	ENSGT00940000160052.i.b	ENSGT00940000157406.ib	ENSGT00940000160130	ENSGT00710000106813.A.`b	ENSGT00530000065251.n.a	ENSGT00530000063688.a.c #22	ENSGT00940000156597.a.a.e ##26	ENSGT01030000234570.d.a.o.b #20	ENSGT00940000157192 #18	ENSGT00940000154695.d.a.i #17	ENSGT00940000157137.s #16	ENSGT00720000108792.B.a #13	ENSGT00940000157295 #11	ENSGT00390000007989.y	ENSGT00940000155752.n	ENSGT00390000007946.i.a	ENSGT00390000012561.b.pb.a.c
Salmoninae_a	ANCESTRAL SPECIES		ENSGT01100000263532.A.a.a.b.b.a.b	ENSGT01100000263532.A.a.a.a.b.a.a	ENSGT01100000263523.G.a.b.b	ENSGT01100000263523.A.z.d	ENSGT01100000263523.F	ENSGT01100000263523.E	ENSGT01100000263532.C.c.b.o.b.a	ENSGT00390000008796.c	ENSGT00940000164835.d	ENSGT00930000151029.i.a.a	ENSGT00940000160052.i.b	ENSGT00940000157406.ib	ENSGT00940000160130	ENSGT00710000106813.A.`b	ENSGT00530000065251.n.a	ENSGT00530000063688.a.c #22	ENSGT00770000121792.a.b	ENSGT00940000156597.a.a.e ##26	ENSGT01030000234570.d.a.o.b #20	ENSGT00940000157192 #18	ENSGT00940000154695.d.a.i #17	ENSGT00940000157137.s #16	ENSGT00720000108792.B.a #13	ENSGT00940000157295 #11	ENSGT00390000007989.y	ENSGT00940000155752.n	ENSGT00390000007946.i.a	ENSGT00390000012561.b.pb.a.c	ENSGT00940000157521.a.a.g	ENSGT00940000155984.i.a.a.a	ENSGT00940000165735
Oncorhynchus	ANCESTRAL SPECIES	3	ENSGT01100000263523.A.z.c.b.a.b	ENSGT01100000263532.A.a.a.b.b.a.a.b.a	ENSGT01100000263532.C.c.a.a.a	ENSGT01100000263532.A.a.b.d	ENSGT01100000263532.C.c.b.o.a.b	ENSGT01100000263532.C.d.b.b	ENSGT01100000263523.F	ENSGT00390000008796.c	ENSGT00940000164835.d	ENSGT00930000151029.i.a.a	ENSGT00940000160052.i.b	ENSGT00940000157406.ib	ENSGT00940000160130	ENSGT00710000106813.A.`b	ENSGT00530000065251.n.a.a	ENSGT00530000063688.a.c #22	ENSGT00770000121792.a.b	ENSGT00940000156597.a.b.b.b.b ##26	ENSGT00940000156597.a.a.e ##26	ENSGT01030000234570.d.a.o.b #20	ENSGT00940000157192 #18	ENSGT00940000154695.d.a.i #17	ENSGT00940000157137.s #16	ENSGT00720000108792.B.a #13	ENSGT00940000157295 #11	ENSGT00390000007989.y	ENSGT00940000155752.n	ENSGT00390000007946.i.a	ENSGT00390000012561.b.pb.a.c	ENSGT00940000157521.a.a.g	ENSGT00940000155984.i.a.a.a
Rainbow trout	MODERN SPECIES	21	ENSOMYG00000073013	ENSOMYG00000064255	ENSOMYG00000068397	ENSOMYG00000020602	ENSOMYG00000066869	ENSOMYG00000060405	ENSOMYG00000030074	ENSOMYG00000053092	ENSOMYG00000030032	snx4 (ENSOMYG00000029748)	ENSOMYG00000029538	znf148 (ENSOMYG00000029530)	slc12a8 (ENSOMYG00000029496)	heg1 (ENSOMYG00000029419)	ENSOMYG00000029387	ENSOMYG00000029308 #22	ENSOMYG00000051766	ENSOMYG00000029291 ##26	ENSOMYG00000029263 ##26	myl1 (ENSOMYG00000029229) #20	cps1 (ENSOMYG00000024168) #18	ERBB4 (ENSOMYG00000022267) #17	IKZF2 (ENSOMYG00000022004) #16	vwc2l (ENSOMYG00000021986) #13	ENSOMYG00000021970	ENSOMYG00000073243	ENSOMYG00000021923 #11	pofut2 (ENSOMYG00000021722)	ENSOMYG00000017903	ENSOMYG00000017518	ENSOMYG00000017420
Oncorhynchus_a	ANCESTRAL SPECIES	8	ENSGT01100000263532.A.a.a.b.b.a.a.b.a	ENSGT01100000263532.A.a.a.b.b.a.a.a.b	ENSGT01100000263532.A.a.a.a.b.a.b	ENSGT01100000263532.A.a.b.d	ENSGT01100000263532.C.c.b.o.a.b	ENSGT01100000263532.C.d.b.b	ENSGT01100000263523.F	ENSGT00390000008796.c	ENSGT00940000164835.d	ENSGT00930000151029.i.a.a	ENSGT00940000160052.i.b	ENSGT00940000157406.ib	ENSGT00940000160130	ENSGT00710000106813.A.`b	ENSGT00530000065251.n.a.a	ENSGT00530000063688.a.c #22	ENSGT00770000121792.a.b	ENSGT00940000156597.a.b.b.b.b ##26	ENSGT00940000156597.a.a.e ##26	ENSGT01030000234570.d.a.o.b #20	ENSGT00940000157192 #18	ENSGT00940000154695.d.a.i #17	ENSGT00940000157137.s #16	ENSGT00720000108792.B.a #13	ENSGT00940000157295 #11	ENSGT00390000007989.y	ENSGT00940000155752.n	ENSGT00390000007946.i.a	ENSGT00390000012561.b.pb.a.c	ENSGT00940000157521.a.a.g	ENSGT00940000155984.i.a.a.a
Chinook salmon	MODERN SPECIES	22	ENSOTSG00005023745	ENSOTSG00005023744	ENSOTSG00005023743	ENSOTSG00005023742	ENSOTSG00005023741	ENSOTSG00005023740	ENSOTSG00005023739	ENSOTSG00005023738	LMLN (ENSOTSG00005023146)	ENSOTSG00005023125	snx4 (ENSOTSG00005020259)	lcat (ENSOTSG00005020237)	znf148 (ENSOTSG00005020163)	slc12a8 (ENSOTSG00005020162)	heg1 (ENSOTSG00005020161)	ENSOTSG00005020160 #22	ENSOTSG00005020159	ENSOTSG00005020158 ##26	ENSOTSG00005020157 ##26	myl1 (ENSOTSG00005020156) #20	CPS1 (ENSOTSG00005012756) #18	ERBB4 (ENSOTSG00005009631) #17	IKZF2 (ENSOTSG00005009606) #16	vwc2l (ENSOTSG00005009604) #13	ENSOTSG00005009560 #11	pofut2 (ENSOTSG00005009557)	MYO1B (ENSOTSG00005006845)	ENSOTSG00005006822	BZW1 (ENSOTSG00005006754)	ENSOTSG00005002453	ENSOTSG00005002353
Huchen	MODERN SPECIES	1386																ENSHHUG00000037632 #22	MAP2 (ENSHHUG00000037652) ##26	myl1 (ENSHHUG00000037688) #20	ENSHHUG00000037699	CPS1 (ENSHHUG00000037712) #18
Salmoninae	ANCESTRAL SPECIES	446						ENSGT00940000155611.j.b	ENSGT00730000111148.z	ENSGT00940000164697.a.d	ENSGT01100000263523.A.z.c.b.b	ENSGT01100000263532.C.c.b.o.b.b	ENSGT00390000008796.d	ENSGT00940000164835.c	ENSGT00930000151029.i.a.b	ENSGT00940000157406.hb	ENSGT00710000106813.A.ab	ENSGT00530000063688.a.d #22	ENSGT00770000121792.b	ENSGT00770000121792.a.a	ENSGT00940000156597.a.a.f ##26	ENSGT01030000234570.d.a.o.a #20	ENSGT00940000154695.d.a.j.b #17	ENSGT00940000157137.t #16	ENSGT00720000108792.B.b #13	ENSGT00940000156532 #12	ENSGT00390000007989.z	ENSGT00940000155752.m	ENSGT00390000012561.b.pb.a.d	ENSGT00940000157521.a.a.h
Salmoninae_a	ANCESTRAL SPECIES		ENSGT00940000155611.j.b	ENSGT00730000111148.z	ENSGT00940000164697.a.d	ENSGT01100000263523.A.z.c.b.b	ENSGT01100000263532.B	ENSGT00940000171516	ENSGT01100000263532.A.b.a	ENSGT01100000263532.A.a.b.c	ENSGT01100000263532.A.a.a.a.a.a.r	ENSGT01100000263532.C.c.b.o.b.b	ENSGT00390000008796.d	ENSGT00940000164835.c	ENSGT00930000151029.i.a.b	ENSGT00940000157406.hb	ENSGT00710000106813.A.ab	ENSGT00530000063688.a.d #22	ENSGT00770000121792.a.a	ENSGT00940000156597.a.a.f ##26	ENSGT01030000234570.d.a.o.a #20	ENSGT00940000154695.d.a.j.b #17	ENSGT00940000157137.t #16	ENSGT00720000108792.B.b #13	ENSGT00940000156532 #12	ENSGT00390000007989.z	ENSGT00940000155752.m	ENSGT00390000012561.b.pb.a.d	ENSGT00940000157521.a.a.h	ENSGT00940000155984.i.a.a.b	ENSGT00940000159862.a.f	ENSGT00940000159213.q.a.b	ENSGT00940000159158.i
Salmo	ANCESTRAL SPECIES	10	ENSGT00940000158443.m.a	ENSGT00940000155392.c	ENSGT00940000153458.B.n	ENSGT00940000155611.j.b	ENSGT00730000111148.z	ENSGT00940000164697.a.d	ENSGT01100000263523.A.z.c.b.a.a	ENSGT01100000263523.A.z.c.b.b	ENSGT01100000263532.A.a.a.b.b.a.b	ENSGT01100000263532.C.c.b.o.b.b	ENSGT00390000008796.d	ENSGT00940000164835.c	ENSGT00930000151029.i.a.b	ENSGT00940000157406.hb	ENSGT00710000106813.A.ab	ENSGT00530000063688.a.d #22	ENSGT00770000121792.b	ENSGT00940000156597.a.b.b.b ##26	ENSGT01030000234570.d.a.o.a #20	ENSGT00940000154695.d.a.j.a.a #17	ENSGT00940000157137.t #16	ENSGT00720000108792.B.b #13	ENSGT00940000156532 #12	ENSGT00390000007989.z	ENSGT00940000155752.m	ENSGT00390000012561.b.pb.a.d.a	ENSGT00940000157521.a.a.h	ENSGT00940000155984.i.a.a.b	ENSGT00940000159862.a.f	ENSGT00940000155925.j.b.a	ENSGT00940000159158.i
River trout	MODERN SPECIES	12	ENSSTUG00000050588	ENSSTUG00000050587	ENSSTUG00000050581	ENSSTUG00000050579	ENSSTUG00000050574	ENSSTUG00000050572	ENSSTUG00000050565	ENSSTUG00000050560	ENSSTUG00000050550	ENSSTUG00000050546	LMLN (ENSSTUG00000050510)	ENSSTUG00000050501	snx4 (ENSSTUG00000050459)	znf148 (ENSSTUG00000050441)	heg1 (ENSSTUG00000050435)	ENSSTUG00000050429 #22	ENSSTUG00000050428	ENSSTUG00000050424 ##26	myl1 (ENSSTUG00000050417) #20	ERBB4 (ENSSTUG00000050216) #17	IKZF2 (ENSSTUG00000050176) #16	vwc2l (ENSSTUG00000050173) #13	BARD1 (ENSSTUG00000050169) #12	pofut2 (ENSSTUG00000050133)	MYO1B (ENSSTUG00000049902)	BZW1 (ENSSTUG00000049832)	LRP1B (ENSSTUG00000048638)	RALB (ENSSTUG00000048441)	inhbb (ENSSTUG00000048417)	ENSSTUG00000048414	ENSSTUG00000048404
Atlantic salmon	MODERN SPECIES	13	ITGA4 (ENSSSAG00000078815)	ube2e3 (ENSSSAG00000078823)	cwc22 (ENSSSAG00000078849)	znf385b (ENSSSAG00000078993)	sestd1 (ENSSSAG00000063637)	ENSSSAG00000079047	TTN (ENSSSAG00000119643)	TTN (ENSSSAG00000105866)	ENSSSAG00000048119	ENSSSAG00000048250	ENSSSAG00000048286	snx4 (ENSSSAG00000048529)	znf148 (ENSSSAG00000048762)	heg1 (ENSSSAG00000048774)	ENSSSAG00000083816	ENSSSAG00000048794 #22	ENSSSAG00000096922 ##26	myl1 (ENSSSAG00000048886) #20	ERBB4 (ENSSSAG00000049188) #17	IKZF2 (ENSSSAG00000058344) #16	vwc2l (ENSSSAG00000058962) #13	BARD1 (ENSSSAG00000059003) #12	pofut2 (ENSSSAG00000059086)	ENSSSAG00000059799	ENSSSAG00000064197	ENSSSAG00000064387	ENSSSAG00000098007	ENSSSAG00000080302	ENSSSAG00000065361	ENSSSAG00000112678	ENSSSAG00000084634
Oncorhynchus	ANCESTRAL SPECIES	13	ENSGT00940000155611.j.b	ENSGT00730000111148.z	ENSGT00940000164697.a.d	ENSGT01100000263532.A.b.a	ENSGT01100000263532.A.a.b.c	ENSGT01100000263532.A.a.a.a.a.a.r	ENSGT01100000263523.A.z.d	ENSGT01100000263523.A.z.c.b.a.a	ENSGT01100000263532.B	ENSGT01100000263532.A.a.a.a.a.a.s	ENSGT00390000008796.d	ENSGT00940000164835.c	ENSGT00930000151029.i.a.b	ENSGT00940000157406.hb	ENSGT00710000106813.A.ab	ENSGT00530000063688.a.d #22	ENSGT00770000121792.a.a	ENSGT00940000156597.a.a.f ##26	ENSGT01030000234570.d.a.o.a #20	ENSGT00940000154695.d.a.j.b #17	ENSGT00940000157137.t #16	ENSGT00720000108792.B.b #13	ENSGT00940000156532 #12	ENSGT00390000007989.z	ENSGT00940000155752.m	ENSGT00390000012561.b.pb.a.d	ENSGT00940000157521.a.a.h	ENSGT00940000155984.i.a.a.b	ENSGT00940000159862.a.f	ENSGT00940000159213.q.a.b	ENSGT00940000159158.i
Oncorhynchus_a	ANCESTRAL SPECIES	11	ENSGT01100000263532.A.a.a.a.a.a.s	ENSGT01100000263532.A.a.a.a.b.a.a	ENSGT01100000263523.G.a.b.b	ENSGT01100000263532.C.d.b.a	ENSGT01100000263532.A.b.b	ENSGT01100000263532.A.a.a.b.b.a.a.a.a	ENSGT01100000263532.A.a.a.b.b.a.b	ENSGT01100000263532.A.a.a.b.b.b	ENSGT01100000263523.J	ENSGT01100000263523.E	ENSGT00390000008796.d	ENSGT00940000164835.c	ENSGT00930000151029.i.a.b	ENSGT00940000157406.hb	ENSGT00710000106813.A.ab	ENSGT00530000063688.a.d #22	ENSGT00770000121792.a.a	ENSGT00940000156597.a.a.f ##26	ENSGT01030000234570.d.a.o.a #20	ENSGT00940000154695.d.a.j.b #17	ENSGT00940000157137.t #16	ENSGT00720000108792.B.b #13	ENSGT00940000156532 #12	ENSGT00390000007989.z	ENSGT00940000155752.m	ENSGT00390000012561.b.pb.a.d	ENSGT00940000157521.a.a.h	ENSGT00940000155984.i.a.a.b	ENSGT00940000159862.a.f	ENSGT00940000159213.q.a.b	ENSGT00940000159158.i
Chinook salmon	MODERN SPECIES	18	ENSOTSG00005013780	ENSOTSG00005013781	ENSOTSG00005013782	ENSOTSG00005013783	ENSOTSG00005013784	ENSOTSG00005013785	ENSOTSG00005012020	ENSOTSG00005012022	ENSOTSG00005012024	ENSOTSG00005012025	LMLN (ENSOTSG00005012030)	ENSOTSG00005012070	snx4 (ENSOTSG00005012076)	znf148 (ENSOTSG00005013401)	heg1 (ENSOTSG00005013430)	ENSOTSG00005013436 #22	ENSOTSG00005013439	ENSOTSG00005013444 ##26	myl1 (ENSOTSG00005013450) #20	ERBB4 (ENSOTSG00005013479) #17	IKZF2 (ENSOTSG00005019743) #16	vwc2l (ENSOTSG00005019744) #13	BARD1 (ENSOTSG00005019745) #12	MYO1B (ENSOTSG00005019751)	BZW1 (ENSOTSG00005028405)	ENSOTSG00005028903	RALB (ENSOTSG00005034689)	inhbb (ENSOTSG00005034690)	gli2a (ENSOTSG00005034692)	tfcp2l1 (ENSOTSG00005034695)	clasp1a (ENSOTSG00005034742)
Coho salmon	MODERN SPECIES	18	ENSOKIG00005018332	ENSOKIG00005018337	ENSOKIG00005018344	ENSOKIG00005018362	ENSOKIG00005018380	ENSOKIG00005018392	ENSOKIG00005018412	ENSOKIG00005018436	ENSOKIG00005018450	ENSOKIG00005018467	LMLN (ENSOKIG00005018512)	ENSOKIG00005018688	snx4 (ENSOKIG00005018706)	znf148 (ENSOKIG00005018892)	heg1 (ENSOKIG00005019020)	ENSOKIG00005019043 #22	ENSOKIG00005019071 ##26	ENSOKIG00005019092 ##26	myl1 (ENSOKIG00005019142) #20	ENSOKIG00005019154	ERBB4 (ENSOKIG00005019215) #17	IKZF2 (ENSOKIG00005019879) #16	vwc2l (ENSOKIG00005019891) #13	BARD1 (ENSOKIG00005019912) #12	ENSOKIG00005019940	pofut2 (ENSOKIG00005019945)	MYO1B (ENSOKIG00005020087)	ENSOKIG00005021394	BZW1 (ENSOKIG00005021431)	ENSOKIG00005022751	RALB (ENSOKIG00005031005)
Rainbow trout	MODERN SPECIES	14	ENSOMYG00000020550	ENSOMYG00000020573	ENSOMYG00000020581	ENSOMYG00000077032	ENSOMYG00000020595	ENSOMYG00000020620	ENSOMYG00000020650	ENSOMYG00000020742	TTN (ENSOMYG00000060349)	ENSOMYG00000020889	ENSOMYG00000052352	ENSOMYG00000021046	snx4 (ENSOMYG00000021138)	znf148 (ENSOMYG00000021482)	heg1 (ENSOMYG00000021522)	ENSOMYG00000021546 #22	ENSOMYG00000021565 ##26	ENSOMYG00000056290 ##26	myl1 (ENSOMYG00000021585) #20	ERBB4 (ENSOMYG00000021728) #17	IKZF2 (ENSOMYG00000021843) #16	ENSOMYG00000051011	vwc2l (ENSOMYG00000021864) #13	BARD1 (ENSOMYG00000021916) #12	ENSOMYG00000072433	pofut2 (ENSOMYG00000021962)	ENSOMYG00000022408	ENSOMYG00000023230	ENSOMYG00000024665	ENSOMYG00000027060	ENSOMYG00000027098
Huchen	MODERN SPECIES	367	ENSHHUG00000024964	ENSHHUG00000024959	ENSHHUG00000024954	ENSHHUG00000024953	ENSHHUG00000024947	ENSHHUG00000024939	ENSHHUG00000024915	ENSHHUG00000024904	ENSHHUG00000024711	ENSHHUG00000024699	LMLN (ENSHHUG00000024692)	ENSHHUG00000024608	snx4 (ENSHHUG00000024536)	znf148 (ENSHHUG00000024489)	heg1 (ENSHHUG00000024478)	ENSHHUG00000024466 #22	ENSHHUG00000024463
Northern pike	MODERN SPECIES	15	ENSELUG00000011431	ENSELUG00000011167	ENSELUG00000011183	ENSELUG00000011201	ENSELUG00000011323	ENSELUG00000028835	ENSELUG00000011527	LMLN (ENSELUG00000011558)	ENSELUG00000011603	snx4 (ENSELUG00000011686)	lcat (ENSELUG00000011715)	znf148 (ENSELUG00000011757)	slc12a8 (ENSELUG00000011808)	heg1 (ENSELUG00000011841)	ENSELUG00000026433	ENSELUG00000011901 #22	ENSELUG00000011946 ##26	myl1 (ENSELUG00000011982) #20	CPS1 (ENSELUG00000012094) #18	ERBB4 (ENSELUG00000012207) #17	IKZF2 (ENSELUG00000032332) #16	hdac4 (ENSELUG00000012563)	twist2 (ENSELUG00000012619)	ENSELUG00000033219	asb1 (ENSELUG00000012649)	traf3ip1 (ENSELUG00000012760)	agr3 (ENSELUG00000012848)	ADARB1 (ENSELUG00000012944)	ITGB2 (ENSELUG00000012969)	vil1 (ENSELUG00000013040)	zgc:66484 (ENSELUG00000013108)
Osteoglossiformes	ANCESTRAL SPECIES	407																ENSGT00530000063688.a #22	ENSGT00940000156597.a.a.db ##26	ENSGT00640000091496 #24	ENSGT00710000106813.A	ENSGT00940000160130	ENSGT00940000157406.db	ENSGT00940000164835	ENSGT00940000158398	ENSGT00390000008796	ENSGT00530000063607.b.i
P. kingsleyae	MODERN SPECIES	321													ENSPKIG00000016974	rab5b (ENSPKIG00000016939)	dnajb11 (ENSPKIG00000016891)	ENSPKIG00000016828 #22	MAP2 (ENSPKIG00000016754) ##26	UNC80 (ENSPKIG00000016630) #24	heg1 (ENSPKIG00000016587)	slc12a8 (ENSPKIG00000016555)	znf148 (ENSPKIG00000016467)	SNX4 (ENSPKIG00000016386)	ENSPKIG00000016339	OSBPL11 (ENSPKIG00000016298)	si:dkey-261m9.17 (ENSPKIG00000016283)	ENSPKIG00000016262	ENSPKIG00000016216	zgc:173585 (ENSPKIG00000016202)	ENSPKIG00000016185	ENSPKIG00000016149	LMLN (ENSPKIG00000016041)
Spotted gar	MODERN SPECIES	650	si:ch211-93g23.2 (ENSLOCG00000004350)	ube2f (ENSLOCG00000004366)	ramp1 (ENSLOCG00000004383)	ENSLOCG00000004395	pofut2 (ENSLOCG00000004410)	MYO1B (ENSLOCG00000004425)	ABCA12 (ENSLOCG00000004451) #11	BARD1 (ENSLOCG00000004470) #12	vwc2l (ENSLOCG00000004485) #13	IKZF2 (ENSLOCG00000004501) #16	erbb4a (ENSLOCG00000004529) #17	CPS1 (ENSLOCG00000004580) #18	lancl1 (ENSLOCG00000004634) #19	mylz3 (ENSLOCG00000004651) #20	acadl (ENSLOCG00000004680) #21	KANSL1L (ENSLOCG00000004691) #22	MAP2 (ENSLOCG00000004706) #26	UNC80 (ENSLOCG00000004735) #24	rpe (ENSLOCG00000004757) #23	AGAP1 (ENSLOCG00000004775)	gbx2 (ENSLOCG00000004803)	ENSLOCG00000004813	iqca1 (ENSLOCG00000004845)	ackr3b (ENSLOCG00000004865)	cops8 (ENSLOCG00000004879)	COL6A3 (ENSLOCG00000004896)	mlpha (ENSLOCG00000004912)	prlh (ENSLOCG00000004947)	RAB17 (ENSLOCG00000004961)	LRRFIP1 (ENSLOCG00000004973)	DNAH7 (ENSLOCG00000005048)
Elephant shark	MODERN SPECIES	1561								SPAG16 (ENSCMIG00000014893) #14	IKZF2 (ENSCMIG00000014890) #16	erbb4a (ENSCMIG00000014584) #17	ENSCMIG00000014428	CPS1 (ENSCMIG00000014321) #18	lancl1 (ENSCMIG00000014218) #19	mylz3 (ENSCMIG00000014198) #20	acadl (ENSCMIG00000014191) #21	ENSCMIG00000014187 #22	rpe (ENSCMIG00000014183) #23	UNC80 (ENSCMIG00000014165) #24	ENSCMIG00000014152 #26	pth2ra (ENSCMIG00000014149) #30	pikfyve (ENSCMIG00000013940) #31	idh1 (ENSCMIG00000013750) #32	ENSCMIG00000013744	ENSCMIG00000013740	ENSCMIG00000013735	ENSCMIG00000013734	ENSCMIG00000013707	ENSCMIG00000013657	ENSCMIG00000013628	ENSCMIG00000013608	ENSCMIG00000013566