Pecora	ANCESTRAL SPECIES	3	ENSGT00510000049460 #7	ENSGT00940000159873 #8	ENSGT00390000005023.a #9	ENSGT01030000234816 #10	ENSGT01090000259985.b.b.b.a.a.a #11	ENSGT00390000001745 #12	ENSGT00390000017213.A #13	ENSGT00940000159164 #14	ENSGT01000000214413.b.a.b.a #15	ENSGT00390000017343 #16	ENSGT00940000156036 #17	ENSGT00390000013354.d.b #18	ENSGT01030000234629.A #19	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242 #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000157473 #28	ENSGT00940000158621 #29	ENSGT00940000162495	ENSGT00940000162526 #31	ENSGT00950000183086.a.b #32	ENSGT00940000156605 #33	ENSGT00940000157963.g.b.a.c.a.b #35	ENSGT00940000157963.g.b.a.c.a.a.a.b ##35	ENSGT00560000078483	ENSGT00940000155987.b
Percora_a	ANCESTRAL SPECIES	3	ENSGT00510000049460 #7	ENSGT00940000159873 #8	ENSGT00390000005023.a #9	ENSGT01030000234816 #10	ENSGT01090000259985.b.b.b.a.a.a #11	ENSGT00390000001745 #12	ENSGT00390000017213.A #13	ENSGT00940000159164 #14	ENSGT01000000214413.b.a.b.a #15	ENSGT00390000017343 #16	ENSGT00940000156036 #17	ENSGT00390000013354.d.b #18	ENSGT01030000234629.A #19	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242 #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000157473 #28	ENSGT00940000158621 #29	ENSGT00940000162495	ENSGT00940000162526 #31	ENSGT00950000183086.a.b #32	ENSGT00940000156605 #33	ENSGT00940000158463.m #34	ENSGT00940000157963.g.b.a.c.a.a.a.b ##35	ENSGT00560000078483	ENSGT00940000155987.b
Bovidae	ANCESTRAL SPECIES	3	ENSGT00510000049460 #7	ENSGT00940000159873 #8	ENSGT00390000005023.a #9	ENSGT01030000234816 #10	ENSGT01090000259985.b.b.b.a.a.a #11	ENSGT00390000001745 #12	ENSGT00390000017213.A #13	ENSGT00940000159164 #14	ENSGT01000000214413.b.a.b.a #15	ENSGT00390000017343 #16	ENSGT00940000156036 #17	ENSGT00390000013354.d.b #18	ENSGT01030000234629.A #19	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242 #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000157473 #28	ENSGT00940000158621 #29	ENSGT00940000162495	ENSGT00940000162526 #31	ENSGT00950000183086.a.b #32	ENSGT00940000156605 #33	ENSGT00940000158463.m #34	ENSGT00940000157963.g.b.a.c.a.a.a.b ##35	ENSGT00560000078483	ENSGT00940000155987.b
Caprinae	ANCESTRAL SPECIES		ENSGT00510000049460 #7	ENSGT00940000159873 #8	ENSGT00390000005023.a #9	ENSGT01030000234816 #10	ENSGT01090000259985.b.b.b.a.a.a #11	ENSGT00390000001745 #12	ENSGT00390000017213.A #13	ENSGT00940000159164 #14	ENSGT01000000214413.b.a.b.a #15	ENSGT00390000017343 #16	ENSGT00940000156036 #17	ENSGT00390000013354.d.b.b #18	ENSGT01030000234629.A #19	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242 #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000157473 #28	ENSGT00940000158621 #29	ENSGT00940000162495	ENSGT00940000162526 #31	ENSGT00950000183086.a.b #32	ENSGT00940000156605 #33	ENSGT00940000158463.m #34	ENSGT00940000157963.g.b.a.c.a.b.b.a #35	ENSGT00940000157963.g.b.a.d.a.b.a ##35	ENSGT00940000157963.g.b.a.d.b.a ##35
Rambouillet Sheep	MODERN SPECIES	19	PIANP (ENSOARG00020004619) #7	COPS7A (ENSOARG00020004603) #8	MLF2 (ENSOARG00020004578) #9	PTMS (ENSOARG00020004551) #10	LAG3 (ENSOARG00020004514) #11	CD4 (ENSOARG00020004460) #12	GPR162 (ENSOARG00020004446) #13	P3H3 (ENSOARG00020023431) #14	GNB3 (ENSOARG00020023409) #15	CDCA3 (ENSOARG00020023351) #16	USP5 (ENSOARG00020023279) #17	TPI1 (ENSOARG00020023229) #18	SPSB2 (ENSOARG00020023215) #19	LRRC23 (ENSOARG00020023167) #20	ENO2 (ENSOARG00020022863) #21	ATN1 (ENSOARG00020022792) #22	C12orf57 (ENSOARG00020022731) #23	PTPN6 (ENSOARG00020022658) #24	PHB2 (ENSOARG00020022553) #25	EMG1 (ENSOARG00020022522) #26	LPCAT3 (ENSOARG00020022475) #27	C1S (ENSOARG00020022422) #28	C1R (ENSOARG00020022383) #29	ENSOARG00020022365 #30	RBP5 (ENSOARG00020022272) #31	CLSTN3 (ENSOARG00020022163) #32	PEX5 (ENSOARG00020021853) #33	ENSOARG00020021773 #34	ENSOARG00020021654 #35	ENSOARG00020020451 #36	ENSOARG00020017398 #37
Goat	MODERN SPECIES	24	PIANP (ENSCHIG00000017399) #7	COPS7A (ENSCHIG00000013096) #8	MLF2 (ENSCHIG00000014233) #9	LAG3 (ENSCHIG00000012648) #11	CD4 (ENSCHIG00000010446) #12	GPR162 (ENSCHIG00000019485) #13	P3H3 (ENSCHIG00000000989) #14	GNB3 (ENSCHIG00000012696) #15	CDCA3 (ENSCHIG00000013074) #16	USP5 (ENSCHIG00000012356) #17	ENSCHIG00000016031 #18	SPSB2 (ENSCHIG00000022848) #19	LRRC23 (ENSCHIG00000011691) #20	ENO2 (ENSCHIG00000018278) #21	C12orf57 (ENSCHIG00000020812) #23	ATN1 (ENSCHIG00000013433) #22	PTPN6 (ENSCHIG00000019949) #24	PHB2 (ENSCHIG00000017171) #25	EMG1 (ENSCHIG00000003188) #26	LPCAT3 (ENSCHIG00000014795) #27	C1S (ENSCHIG00000012570) #28	C1R (ENSCHIG00000023479) #29	C1RL (ENSCHIG00000013828)	RBP5 (ENSCHIG00000012769) #31	CLSTN3 (ENSCHIG00000010522) #32	ENSCHIG00000016189	PEX5 (ENSCHIG00000014978) #33	ENSCHIG00000012940 ##35	ENSCHIG00000008296 #35	ENSCHIG00000012795 ##35	ENSCHIG00000015136 ##35
Bovinae	ANCESTRAL SPECIES	10	ENSGT00510000049460 #7	ENSGT00940000159873 #8	ENSGT00390000005023.a #9	ENSGT01030000234816 #10	ENSGT01090000259985.b.b.b.a.a.a #11	ENSGT00390000001745 #12	ENSGT00390000017213.A #13	ENSGT00940000159164 #14	ENSGT01000000214413.b.a.b.a #15	ENSGT00390000017343 #16	ENSGT00940000156036 #17	ENSGT00390000013354.d.b #18	ENSGT01030000234629.A #19	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242 #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000157473 #28	ENSGT00940000158621 #29	ENSGT00940000162495	ENSGT00940000162526 #31	ENSGT00950000183086.a.b #32	ENSGT00940000156605 #33	ENSGT00940000157963.g.b.a.c.a.b #35	ENSGT00940000157963.g.b.a.c.a.a.a.b ##35	ENSGT00560000078483	ENSGT00940000155987.b
Bos	ANCESTRAL SPECIES	2	ENSGT00510000049460 #7	ENSGT00940000159873 #8	ENSGT00390000005023.a #9	ENSGT01030000234816 #10	ENSGT01090000259985.b.b.b.a.a.a #11	ENSGT00390000001745 #12	ENSGT00390000017213.A #13	ENSGT00940000159164 #14	ENSGT01000000214413.b.a.b.a #15	ENSGT00390000017343 #16	ENSGT00940000156036 #17	ENSGT00390000013354.d.b #18	ENSGT01030000234629.A #19	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242 #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000157473 #28	ENSGT00940000158621.o.a #29	ENSGT00940000158621.o.b #29	ENSGT00940000162526 #31	ENSGT00950000183086.a.b #32	ENSGT00940000156605 #33	ENSGT00940000157963.g.b.a.c.a.b #35	ENSGT00940000157963.g.b.a.c.a.a.a.a #36	ENSGT00940000157963.g.b.a.d.a.b.d ##35	ENSGT00940000157963.g.b.a.d.b.c ##35
Bos_a	ANCESTRAL SPECIES	24	ENSGT00510000049460 #7	ENSGT00940000159873 #8	ENSGT00390000005023.a #9	ENSGT01030000234816 #10	ENSGT01090000259985.b.b.b.a.a.a #11	ENSGT00390000001745 #12	ENSGT00390000017213.A #13	ENSGT00940000159164 #14	ENSGT01000000214413.b.a.b.a #15	ENSGT00390000017343 #16	ENSGT00940000156036 #17	ENSGT00390000013354.d.b #18	ENSGT01030000234629.A #19	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242 #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000157473 #28	ENSGT00940000158621.o.a #29
Wild yak	MODERN SPECIES	2103	PIANP (ENSBMUG00000009210) #7	COPS7A (ENSBMUG00000009260) #8	MLF2 (ENSBMUG00000009291) #9	ENSBMUG00000009305	LAG3 (ENSBMUG00000009333) #11	CD4 (ENSBMUG00000009372) #12	ENSBMUG00000009392 #13	P3H3 (ENSBMUG00000009413) #14	GNB3 (ENSBMUG00000009430) #15	CDCA3 (ENSBMUG00000009485) #16	USP5 (ENSBMUG00000009512) #17	TPI1 (ENSBMUG00000009525) #18	SPSB2 (ENSBMUG00000009535) #19	LRRC23 (ENSBMUG00000009544) #20	ENO2 (ENSBMUG00000009582) #21	ATN1 (ENSBMUG00000009661) #22	C12orf57 (ENSBMUG00000009683) #23	PTPN6 (ENSBMUG00000009724) #24	PHB2 (ENSBMUG00000009812) #25	EMG1 (ENSBMUG00000009841) #26	LPCAT3 (ENSBMUG00000009851) #27	C1S (ENSBMUG00000009867) #28	ENSBMUG00000009901 #29
Domestic yak	MODERN SPECIES	24	PIANP (ENSBGRG00000000449) #7	COPS7A (ENSBGRG00000000425) #8	MLF2 (ENSBGRG00000000386) #9	PTMS (ENSBGRG00000000358) #10	LAG 3 (ENSBGRG00000000330) #11	CD4 (ENSBGRG00000000298) #12	GPR162 (ENSBGRG00000022613) #13	P3H3 (ENSBGRG00000022465) #14	GNB3 (ENSBGRG00000022348) #15	CDCA3 (ENSBGRG00000022253) #16	USP5 (ENSBGRG00000022011) #17	TPI1 (ENSBGRG00000021836) #18	SPSB2 (ENSBGRG00000021787) #19	LRRC23 (ENSBGRG00000021691) #20	ENO2 (ENSBGRG00000021376) #21	ATN1 (ENSBGRG00000021256) #22	C12orf57 (ENSBGRG00000021156) #23	PTPN6 (ENSBGRG00000020914) #24	PHB2 (ENSBGRG00000020632) #25	ENSBGRG00000020598 #26	ENSBGRG00000020557 #26	LPCAT3 (ENSBGRG00000020472) #27	C1S (ENSBGRG00000020327) #28	ENSBGRG00000020276 #29	ENSBGRG00000020256	ENSBGRG00000019561 ##35	ENSBGRG00000019397 ##35	ENSBGRG00000017969 ##35	ENSBGRG00000015663	ENSBGRG00000013995 #35	ENSBGRG00000013903
Bos_b	ANCESTRAL SPECIES	30	ENSGT00510000049460 #7	ENSGT00940000159873 #8	ENSGT00390000005023.a #9	ENSGT01030000234816 #10	ENSGT01090000259985.b.b.b.a.a.a #11	ENSGT00390000001745 #12	ENSGT00390000017213.A #13	ENSGT00940000159164 #14	ENSGT01000000214413.b.a.b.a #15	ENSGT00390000017343 #16	ENSGT00940000156036 #17	ENSGT00390000013354.d.b #18	ENSGT01030000234629.A #19	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242 #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000157473 #28	ENSGT00940000158621.o.a #29	ENSGT00940000158621.o.b #29	ENSGT00940000162526 #31	ENSGT00950000183086.a.b #32	ENSGT00940000156605 #33	ENSGT00940000157963.g.b.a.c.a.b.c #35
Hybrid Bos Indicus	MODERN SPECIES	24	COPS7A (ENSBIXG00005019728) #8	ENSBIXG00005019647	MLF2 (ENSBIXG00005019632) #9	PTMS (ENSBIXG00005019569) #10	LAG3 (ENSBIXG00005019525) #11	CD4 (ENSBIXG00005019448) #12	GPR162 (ENSBIXG00005003161) #13	P3H3 (ENSBIXG00005019389) #14	GNB3 (ENSBIXG00005003143) #15	CDCA3 (ENSBIXG00005019324) #16	USP5 (ENSBIXG00005019301) #17	TPI1 (ENSBIXG00005019261) #18	SPSB2 (ENSBIXG00005019228) #19	LRRC23 (ENSBIXG00005006028) #20	ENO2 (ENSBIXG00005019163) #21	ATN1 (ENSBIXG00005019104) #22	C12orf57 (ENSBIXG00005019072) #23	PTPN6 (ENSBIXG00005019039) #24	PHB2 (ENSBIXG00005018962) #25	EMG1 (ENSBIXG00005018929) #26	LPCAT3 (ENSBIXG00005018911) #27	C1S (ENSBIXG00005018867) #28	ENSBIXG00005018766 #29	ENSBIXG00005018687 #29	RBP5 (ENSBIXG00005003024) #31	CLSTN3 (ENSBIXG00005018641) #32	PEX5 (ENSBIXG00005018586) #33	ENSBIXG00005018398 #35	ENSBIXG00005018133 #35	ENSBIXG00005002924	ENSBIXG00005017933 #36
Cow	MODERN SPECIES	24	COPS7A (ENSBTAG00000011111) #8	MLF2 (ENSBTAG00000014931) #9	PTMS (ENSBTAG00000018451)	LAG3 (ENSBTAG00000034295) #11	ENSBTAG00000051680	CD4 (ENSBTAG00000003255) #12	GPR162 (ENSBTAG00000034385) #13	P3H3 (ENSBTAG00000003598) #14	GNB3 (ENSBTAG00000016043) #15	CDCA3 (ENSBTAG00000019777) #16	USP5 (ENSBTAG00000019780) #17	TPI1 (ENSBTAG00000019782) #18	SPSB2 (ENSBTAG00000053346) #19	LRRC23 (ENSBTAG00000011273) #20	ENO2 (ENSBTAG00000011274) #21	ATN1 (ENSBTAG00000018828) #22	PTPN6 (ENSBTAG00000020294) #24	PHB2 (ENSBTAG00000013123) #25	EMG1 (ENSBTAG00000013126) #26	LPCAT3 (ENSBTAG00000013127) #27	C1S (ENSBTAG00000004840) #28	C1R (ENSBTAG00000008612) #29	ENSBTAG00000037743 #29	C1RL (ENSBTAG00000016204)	RBP5 (ENSBTAG00000008127) #31	CLSTN3 (ENSBTAG00000008129) #32	PEX5 (ENSBTAG00000010490) #33	CD163L1 (ENSBTAG00000054245) #35	ENSBTAG00000050749 ##35	ENSBTAG00000050301	ENSBTAG00000039256 ##35
American bison	MODERN SPECIES	3130	ENSBBBG00000013164 #8	ENSBBBG00000013172	MLF2 (ENSBBBG00000013185) #9	PTMS (ENSBBBG00000013194) #10	LAG3 (ENSBBBG00000001644) #11	CD4 (ENSBBBG00000013265) #12	ENSBBBG00000002685 #13	P3H3 (ENSBBBG00000013282) #14	GNB3 (ENSBBBG00000001619) #15	CDCA3 (ENSBBBG00000013314) #16	USP5 (ENSBBBG00000013362) #17	TPI1 (ENSBBBG00000013389) #18	SPSB2 (ENSBBBG00000001570) #19	LRRC23 (ENSBBBG00000001562) #20	ENO2 (ENSBBBG00000013486) #21	ATN1 (ENSBBBG00000013523) #22	C12orf57 (ENSBBBG00000013536) #23	PTPN6 (ENSBBBG00000013574) #24	PHB2 (ENSBBBG00000013615) #25	EMG1 (ENSBBBG00000013624) #26	LPCAT3 (ENSBBBG00000013637) #27	C1S (ENSBBBG00000002855) #28	C1R (ENSBBBG00000013692) #29
Siberian musk deer	MODERN SPECIES	1247	PIANP (ENSMMSG00000021673) #7	COPS7A (ENSMMSG00000021708) #8	MLF2 (ENSMMSG00000021729) #9	PTMS (ENSMMSG00000021756) #10	LAG3 (ENSMMSG00000021775) #11	CD4 (ENSMMSG00000021846) #12	GPR162 (ENSMMSG00000021887) #13	P3H3 (ENSMMSG00000021912) #14	GNB3 (ENSMMSG00000021946) #15	CDCA3 (ENSMMSG00000021980) #16	USP5 (ENSMMSG00000022009) #17	TPI1 (ENSMMSG00000022032) #18	SPSB2 (ENSMMSG00000022073) #19	LRRC23 (ENSMMSG00000022095) #20	ENO2 (ENSMMSG00000022127) #21	ATN1 (ENSMMSG00000022203) #22	C12orf57 (ENSMMSG00000022213) #23	PTPN6 (ENSMMSG00000020364) #24	PHB2 (ENSMMSG00000020421) #25	EMG1 (ENSMMSG00000020458) #26	LPCAT3 (ENSMMSG00000020493) #27	C1S (ENSMMSG00000020518) #28	C1R (ENSMMSG00000020571) #29	C1RL (ENSMMSG00000020657)	RBP5 (ENSMMSG00000020698) #31	CLSTN3 (ENSMMSG00000020725) #32	PEX5 (ENSMMSG00000020788) #33	ENSMMSG00000021073 #34	ENSMMSG00000021129 ##35	ENSMMSG00000021653 ##35	ENSMMSG00000022481 ##35
Yarkand deer	MODERN SPECIES	14	PIANP (ENSCHYG00000024684) #7	COPS7A (ENSCHYG00000024633) #8	MLF2 (ENSCHYG00000024596) #9	ENSCHYG00000024584	LAG3 (ENSCHYG00000024522) #11	CD4 (ENSCHYG00000024477) #12	GPR162 (ENSCHYG00000024446) #13	P3H3 (ENSCHYG00000024241) #14	GNB3 (ENSCHYG00000024150) #15	CDCA3 (ENSCHYG00000024020) #16	USP5 (ENSCHYG00000023817) #17	TPI1 (ENSCHYG00000023734) #18	SPSB2 (ENSCHYG00000023711) #19	LRRC23 (ENSCHYG00000023669) #20	ENO2 (ENSCHYG00000023562) #21	ATN1 (ENSCHYG00000023488) #22	C12orf57 (ENSCHYG00000023367) #23	PTPN6 (ENSCHYG00000023189) #24	ENSCHYG00000022916 #25	EMG1 (ENSCHYG00000022863) #26	LPCAT3 (ENSCHYG00000022709) #27	C1S (ENSCHYG00000022602) #28	ENSCHYG00000022582	C1R (ENSCHYG00000022253) #29	C1RL (ENSCHYG00000022163)	RBP5 (ENSCHYG00000022108) #31	CLSTN3 (ENSCHYG00000021837) #32	PEX5 (ENSCHYG00000021374) #33	ENSCHYG00000021319	ENSCHYG00000020146 ##35	ENSCHYG00000019724 #36