Laurasiatheria	ANCESTRAL SPECIES	6	ENSGT00510000049460 #7	ENSGT00940000159873 #8	ENSGT00390000005023.a #9	ENSGT01030000234816 #10	ENSGT01090000259985.b.b.b.a.a.a #11	ENSGT00390000001745 #12	ENSGT00390000017213.A #13	ENSGT00940000159164 #14	ENSGT01000000214413.b.a.b.a #15	ENSGT00390000017343 #16	ENSGT00940000156036 #17	ENSGT00390000013354.d.b #18	ENSGT01030000234629.A #19	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242 #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000157473 #28	ENSGT00940000158621 #29	ENSGT00940000162495	ENSGT00940000162526 #31	ENSGT00950000183086.a.b #32	ENSGT00940000156605 #33	ENSGT00940000157963 #35	ENSGT00560000078483	ENSGT00940000164229	ENSGT00940000155987.b
Laurasiatheria_a	ANCESTRAL SPECIES	6	ENSGT00510000049460 #7	ENSGT00940000159873 #8	ENSGT00390000005023.a #9	ENSGT01030000234816 #10	ENSGT01090000259985.b.b.b.a.a.a #11	ENSGT00390000001745 #12	ENSGT00390000017213.A #13	ENSGT00940000159164 #14	ENSGT01000000214413.b.a.b.a #15	ENSGT00390000017343 #16	ENSGT00940000156036 #17	ENSGT00390000013354.d.b #18	ENSGT01030000234629.A #19	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242 #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000157473 #28	ENSGT00940000158621 #29	ENSGT00940000162495	ENSGT00940000162526 #31	ENSGT00950000183086.a.b #32	ENSGT00940000156605 #33	ENSGT00940000157963 #35	ENSGT00560000078483	ENSGT00940000164229	ENSGT00940000155987.b
Artiodactyla	ANCESTRAL SPECIES	6	ENSGT00510000049460 #7	ENSGT00940000159873 #8	ENSGT00390000005023.a #9	ENSGT01030000234816 #10	ENSGT01090000259985.b.b.b.a.a.a #11	ENSGT00390000001745 #12	ENSGT00390000017213.A #13	ENSGT00940000159164 #14	ENSGT01000000214413.b.a.b.a #15	ENSGT00390000017343 #16	ENSGT00940000156036 #17	ENSGT00390000013354.d.b #18	ENSGT01030000234629.A #19	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242 #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000157473 #28	ENSGT00940000158621 #29	ENSGT00940000162495	ENSGT00940000162526 #31	ENSGT00950000183086.a.b #32	ENSGT00940000156605 #33	ENSGT00940000157963.h ##35	ENSGT00940000157963.g.b.a #35	ENSGT00560000078483	ENSGT00940000155987.b
Artiodactyla_a	ANCESTRAL SPECIES	5	ENSGT00510000049460 #7	ENSGT00940000159873 #8	ENSGT00390000005023.a #9	ENSGT01030000234816 #10	ENSGT01090000259985.b.b.b.a.a.a #11	ENSGT00390000001745 #12	ENSGT00390000017213.A #13	ENSGT00940000159164 #14	ENSGT01000000214413.b.a.b.a #15	ENSGT00390000017343 #16	ENSGT00940000156036 #17	ENSGT00390000013354.d.b #18	ENSGT01030000234629.A #19	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242 #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000157473 #28	ENSGT00940000158621 #29	ENSGT00940000162495	ENSGT00940000162526 #31	ENSGT00950000183086.a.b #32	ENSGT00940000156605 #33	ENSGT00940000157963.g.b.a #35	ENSGT00560000078483	ENSGT00940000155987.b	ENSGT00940000160666
Artiodactyla_b	ANCESTRAL SPECIES	5	ENSGT00510000049460 #7	ENSGT00940000159873 #8	ENSGT00390000005023.a #9	ENSGT01030000234816 #10	ENSGT01090000259985.b.b.b.a.a.a #11	ENSGT00390000001745 #12	ENSGT00390000017213.A #13	ENSGT00940000159164 #14	ENSGT01000000214413.b.a.b.a #15	ENSGT00390000017343 #16	ENSGT00940000156036 #17	ENSGT00390000013354.d.b #18	ENSGT01030000234629.A #19	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242 #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000157473 #28	ENSGT00940000158621 #29	ENSGT00940000162495	ENSGT00940000162526 #31	ENSGT00950000183086.a.b #32	ENSGT00940000156605 #33	ENSGT00940000157963.g.b.a #35	ENSGT00560000078483	ENSGT00940000155987.b	ENSGT00940000160666
Pecora	ANCESTRAL SPECIES	3	ENSGT00510000049460 #7	ENSGT00940000159873 #8	ENSGT00390000005023.a #9	ENSGT01030000234816 #10	ENSGT01090000259985.b.b.b.a.a.a #11	ENSGT00390000001745 #12	ENSGT00390000017213.A #13	ENSGT00940000159164 #14	ENSGT01000000214413.b.a.b.a #15	ENSGT00390000017343 #16	ENSGT00940000156036 #17	ENSGT00390000013354.d.b #18	ENSGT01030000234629.A #19	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242 #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000157473 #28	ENSGT00940000158621 #29	ENSGT00940000162495	ENSGT00940000162526 #31	ENSGT00950000183086.a.b #32	ENSGT00940000156605 #33	ENSGT00940000157963.g.b.a.c.a.b #35	ENSGT00940000157963.g.b.a.c.a.a.a.b ##35	ENSGT00560000078483	ENSGT00940000155987.b
Percora_a	ANCESTRAL SPECIES	3	ENSGT00510000049460 #7	ENSGT00940000159873 #8	ENSGT00390000005023.a #9	ENSGT01030000234816 #10	ENSGT01090000259985.b.b.b.a.a.a #11	ENSGT00390000001745 #12	ENSGT00390000017213.A #13	ENSGT00940000159164 #14	ENSGT01000000214413.b.a.b.a #15	ENSGT00390000017343 #16	ENSGT00940000156036 #17	ENSGT00390000013354.d.b #18	ENSGT01030000234629.A #19	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242 #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000157473 #28	ENSGT00940000158621 #29	ENSGT00940000162495	ENSGT00940000162526 #31	ENSGT00950000183086.a.b #32	ENSGT00940000156605 #33	ENSGT00940000158463.m #34	ENSGT00940000157963.g.b.a.c.a.a.a.b ##35	ENSGT00560000078483	ENSGT00940000155987.b
Bovidae	ANCESTRAL SPECIES	3	ENSGT00510000049460 #7	ENSGT00940000159873 #8	ENSGT00390000005023.a #9	ENSGT01030000234816 #10	ENSGT01090000259985.b.b.b.a.a.a #11	ENSGT00390000001745 #12	ENSGT00390000017213.A #13	ENSGT00940000159164 #14	ENSGT01000000214413.b.a.b.a #15	ENSGT00390000017343 #16	ENSGT00940000156036 #17	ENSGT00390000013354.d.b #18	ENSGT01030000234629.A #19	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242 #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000157473 #28	ENSGT00940000158621 #29	ENSGT00940000162495	ENSGT00940000162526 #31	ENSGT00950000183086.a.b #32	ENSGT00940000156605 #33	ENSGT00940000158463.m #34	ENSGT00940000157963.g.b.a.c.a.a.a.b ##35	ENSGT00560000078483	ENSGT00940000155987.b
Caprinae	ANCESTRAL SPECIES		ENSGT00510000049460 #7	ENSGT00940000159873 #8	ENSGT00390000005023.a #9	ENSGT01030000234816 #10	ENSGT01090000259985.b.b.b.a.a.a #11	ENSGT00390000001745 #12	ENSGT00390000017213.A #13	ENSGT00940000159164 #14	ENSGT01000000214413.b.a.b.a #15	ENSGT00390000017343 #16	ENSGT00940000156036 #17	ENSGT00390000013354.d.b.b #18	ENSGT01030000234629.A #19	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242 #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000157473 #28	ENSGT00940000158621 #29	ENSGT00940000162495	ENSGT00940000162526 #31	ENSGT00950000183086.a.b #32	ENSGT00940000156605 #33	ENSGT00940000158463.m #34	ENSGT00940000157963.g.b.a.c.a.b.b.a #35	ENSGT00940000157963.g.b.a.d.a.b.a ##35	ENSGT00940000157963.g.b.a.d.b.a ##35
Rambouillet Sheep	MODERN SPECIES	19	PIANP (ENSOARG00020004619) #7	COPS7A (ENSOARG00020004603) #8	MLF2 (ENSOARG00020004578) #9	PTMS (ENSOARG00020004551) #10	LAG3 (ENSOARG00020004514) #11	CD4 (ENSOARG00020004460) #12	GPR162 (ENSOARG00020004446) #13	P3H3 (ENSOARG00020023431) #14	GNB3 (ENSOARG00020023409) #15	CDCA3 (ENSOARG00020023351) #16	USP5 (ENSOARG00020023279) #17	TPI1 (ENSOARG00020023229) #18	SPSB2 (ENSOARG00020023215) #19	LRRC23 (ENSOARG00020023167) #20	ENO2 (ENSOARG00020022863) #21	ATN1 (ENSOARG00020022792) #22	C12orf57 (ENSOARG00020022731) #23	PTPN6 (ENSOARG00020022658) #24	PHB2 (ENSOARG00020022553) #25	EMG1 (ENSOARG00020022522) #26	LPCAT3 (ENSOARG00020022475) #27	C1S (ENSOARG00020022422) #28	C1R (ENSOARG00020022383) #29	ENSOARG00020022365 #30	RBP5 (ENSOARG00020022272) #31	CLSTN3 (ENSOARG00020022163) #32	PEX5 (ENSOARG00020021853) #33	ENSOARG00020021773 #34	ENSOARG00020021654 #35	ENSOARG00020020451 #36	ENSOARG00020017398 #37
Goat	MODERN SPECIES	24	PIANP (ENSCHIG00000017399) #7	COPS7A (ENSCHIG00000013096) #8	MLF2 (ENSCHIG00000014233) #9	LAG3 (ENSCHIG00000012648) #11	CD4 (ENSCHIG00000010446) #12	GPR162 (ENSCHIG00000019485) #13	P3H3 (ENSCHIG00000000989) #14	GNB3 (ENSCHIG00000012696) #15	CDCA3 (ENSCHIG00000013074) #16	USP5 (ENSCHIG00000012356) #17	ENSCHIG00000016031 #18	SPSB2 (ENSCHIG00000022848) #19	LRRC23 (ENSCHIG00000011691) #20	ENO2 (ENSCHIG00000018278) #21	C12orf57 (ENSCHIG00000020812) #23	ATN1 (ENSCHIG00000013433) #22	PTPN6 (ENSCHIG00000019949) #24	PHB2 (ENSCHIG00000017171) #25	EMG1 (ENSCHIG00000003188) #26	LPCAT3 (ENSCHIG00000014795) #27	C1S (ENSCHIG00000012570) #28	C1R (ENSCHIG00000023479) #29	C1RL (ENSCHIG00000013828)	RBP5 (ENSCHIG00000012769) #31	CLSTN3 (ENSCHIG00000010522) #32	ENSCHIG00000016189	PEX5 (ENSCHIG00000014978) #33	ENSCHIG00000012940 ##35	ENSCHIG00000008296 #35	ENSCHIG00000012795 ##35	ENSCHIG00000015136 ##35
Bovinae	ANCESTRAL SPECIES	10	ENSGT00510000049460 #7	ENSGT00940000159873 #8	ENSGT00390000005023.a #9	ENSGT01030000234816 #10	ENSGT01090000259985.b.b.b.a.a.a #11	ENSGT00390000001745 #12	ENSGT00390000017213.A #13	ENSGT00940000159164 #14	ENSGT01000000214413.b.a.b.a #15	ENSGT00390000017343 #16	ENSGT00940000156036 #17	ENSGT00390000013354.d.b #18	ENSGT01030000234629.A #19	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242 #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000157473 #28	ENSGT00940000158621 #29	ENSGT00940000162495	ENSGT00940000162526 #31	ENSGT00950000183086.a.b #32	ENSGT00940000156605 #33	ENSGT00940000157963.g.b.a.c.a.b #35	ENSGT00940000157963.g.b.a.c.a.a.a.b ##35	ENSGT00560000078483	ENSGT00940000155987.b
Bos	ANCESTRAL SPECIES	2	ENSGT00510000049460 #7	ENSGT00940000159873 #8	ENSGT00390000005023.a #9	ENSGT01030000234816 #10	ENSGT01090000259985.b.b.b.a.a.a #11	ENSGT00390000001745 #12	ENSGT00390000017213.A #13	ENSGT00940000159164 #14	ENSGT01000000214413.b.a.b.a #15	ENSGT00390000017343 #16	ENSGT00940000156036 #17	ENSGT00390000013354.d.b #18	ENSGT01030000234629.A #19	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242 #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000157473 #28	ENSGT00940000158621.o.a #29	ENSGT00940000158621.o.b #29	ENSGT00940000162526 #31	ENSGT00950000183086.a.b #32	ENSGT00940000156605 #33	ENSGT00940000157963.g.b.a.c.a.b #35	ENSGT00940000157963.g.b.a.c.a.a.a.a #36	ENSGT00940000157963.g.b.a.d.a.b.d ##35	ENSGT00940000157963.g.b.a.d.b.c ##35
Bos_a	ANCESTRAL SPECIES	24	ENSGT00510000049460 #7	ENSGT00940000159873 #8	ENSGT00390000005023.a #9	ENSGT01030000234816 #10	ENSGT01090000259985.b.b.b.a.a.a #11	ENSGT00390000001745 #12	ENSGT00390000017213.A #13	ENSGT00940000159164 #14	ENSGT01000000214413.b.a.b.a #15	ENSGT00390000017343 #16	ENSGT00940000156036 #17	ENSGT00390000013354.d.b #18	ENSGT01030000234629.A #19	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242 #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000157473 #28	ENSGT00940000158621.o.a #29
Wild yak	MODERN SPECIES	2103	PIANP (ENSBMUG00000009210) #7	COPS7A (ENSBMUG00000009260) #8	MLF2 (ENSBMUG00000009291) #9	ENSBMUG00000009305	LAG3 (ENSBMUG00000009333) #11	CD4 (ENSBMUG00000009372) #12	ENSBMUG00000009392 #13	P3H3 (ENSBMUG00000009413) #14	GNB3 (ENSBMUG00000009430) #15	CDCA3 (ENSBMUG00000009485) #16	USP5 (ENSBMUG00000009512) #17	TPI1 (ENSBMUG00000009525) #18	SPSB2 (ENSBMUG00000009535) #19	LRRC23 (ENSBMUG00000009544) #20	ENO2 (ENSBMUG00000009582) #21	ATN1 (ENSBMUG00000009661) #22	C12orf57 (ENSBMUG00000009683) #23	PTPN6 (ENSBMUG00000009724) #24	PHB2 (ENSBMUG00000009812) #25	EMG1 (ENSBMUG00000009841) #26	LPCAT3 (ENSBMUG00000009851) #27	C1S (ENSBMUG00000009867) #28	ENSBMUG00000009901 #29
Domestic yak	MODERN SPECIES	24	PIANP (ENSBGRG00000000449) #7	COPS7A (ENSBGRG00000000425) #8	MLF2 (ENSBGRG00000000386) #9	PTMS (ENSBGRG00000000358) #10	LAG 3 (ENSBGRG00000000330) #11	CD4 (ENSBGRG00000000298) #12	GPR162 (ENSBGRG00000022613) #13	P3H3 (ENSBGRG00000022465) #14	GNB3 (ENSBGRG00000022348) #15	CDCA3 (ENSBGRG00000022253) #16	USP5 (ENSBGRG00000022011) #17	TPI1 (ENSBGRG00000021836) #18	SPSB2 (ENSBGRG00000021787) #19	LRRC23 (ENSBGRG00000021691) #20	ENO2 (ENSBGRG00000021376) #21	ATN1 (ENSBGRG00000021256) #22	C12orf57 (ENSBGRG00000021156) #23	PTPN6 (ENSBGRG00000020914) #24	PHB2 (ENSBGRG00000020632) #25	ENSBGRG00000020598 #26	ENSBGRG00000020557 #26	LPCAT3 (ENSBGRG00000020472) #27	C1S (ENSBGRG00000020327) #28	ENSBGRG00000020276 #29	ENSBGRG00000020256	ENSBGRG00000019561 ##35	ENSBGRG00000019397 ##35	ENSBGRG00000017969 ##35	ENSBGRG00000015663	ENSBGRG00000013995 #35	ENSBGRG00000013903
Bos_b	ANCESTRAL SPECIES	30	ENSGT00510000049460 #7	ENSGT00940000159873 #8	ENSGT00390000005023.a #9	ENSGT01030000234816 #10	ENSGT01090000259985.b.b.b.a.a.a #11	ENSGT00390000001745 #12	ENSGT00390000017213.A #13	ENSGT00940000159164 #14	ENSGT01000000214413.b.a.b.a #15	ENSGT00390000017343 #16	ENSGT00940000156036 #17	ENSGT00390000013354.d.b #18	ENSGT01030000234629.A #19	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242 #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000157473 #28	ENSGT00940000158621.o.a #29	ENSGT00940000158621.o.b #29	ENSGT00940000162526 #31	ENSGT00950000183086.a.b #32	ENSGT00940000156605 #33	ENSGT00940000157963.g.b.a.c.a.b.c #35
Hybrid Bos Indicus	MODERN SPECIES	24	COPS7A (ENSBIXG00005019728) #8	ENSBIXG00005019647	MLF2 (ENSBIXG00005019632) #9	PTMS (ENSBIXG00005019569) #10	LAG3 (ENSBIXG00005019525) #11	CD4 (ENSBIXG00005019448) #12	GPR162 (ENSBIXG00005003161) #13	P3H3 (ENSBIXG00005019389) #14	GNB3 (ENSBIXG00005003143) #15	CDCA3 (ENSBIXG00005019324) #16	USP5 (ENSBIXG00005019301) #17	TPI1 (ENSBIXG00005019261) #18	SPSB2 (ENSBIXG00005019228) #19	LRRC23 (ENSBIXG00005006028) #20	ENO2 (ENSBIXG00005019163) #21	ATN1 (ENSBIXG00005019104) #22	C12orf57 (ENSBIXG00005019072) #23	PTPN6 (ENSBIXG00005019039) #24	PHB2 (ENSBIXG00005018962) #25	EMG1 (ENSBIXG00005018929) #26	LPCAT3 (ENSBIXG00005018911) #27	C1S (ENSBIXG00005018867) #28	ENSBIXG00005018766 #29	ENSBIXG00005018687 #29	RBP5 (ENSBIXG00005003024) #31	CLSTN3 (ENSBIXG00005018641) #32	PEX5 (ENSBIXG00005018586) #33	ENSBIXG00005018398 #35	ENSBIXG00005018133 #35	ENSBIXG00005002924	ENSBIXG00005017933 #36
Cow	MODERN SPECIES	24	COPS7A (ENSBTAG00000011111) #8	MLF2 (ENSBTAG00000014931) #9	PTMS (ENSBTAG00000018451)	LAG3 (ENSBTAG00000034295) #11	ENSBTAG00000051680	CD4 (ENSBTAG00000003255) #12	GPR162 (ENSBTAG00000034385) #13	P3H3 (ENSBTAG00000003598) #14	GNB3 (ENSBTAG00000016043) #15	CDCA3 (ENSBTAG00000019777) #16	USP5 (ENSBTAG00000019780) #17	TPI1 (ENSBTAG00000019782) #18	SPSB2 (ENSBTAG00000053346) #19	LRRC23 (ENSBTAG00000011273) #20	ENO2 (ENSBTAG00000011274) #21	ATN1 (ENSBTAG00000018828) #22	PTPN6 (ENSBTAG00000020294) #24	PHB2 (ENSBTAG00000013123) #25	EMG1 (ENSBTAG00000013126) #26	LPCAT3 (ENSBTAG00000013127) #27	C1S (ENSBTAG00000004840) #28	C1R (ENSBTAG00000008612) #29	ENSBTAG00000037743 #29	C1RL (ENSBTAG00000016204)	RBP5 (ENSBTAG00000008127) #31	CLSTN3 (ENSBTAG00000008129) #32	PEX5 (ENSBTAG00000010490) #33	CD163L1 (ENSBTAG00000054245) #35	ENSBTAG00000050749 ##35	ENSBTAG00000050301	ENSBTAG00000039256 ##35
American bison	MODERN SPECIES	3130	ENSBBBG00000013164 #8	ENSBBBG00000013172	MLF2 (ENSBBBG00000013185) #9	PTMS (ENSBBBG00000013194) #10	LAG3 (ENSBBBG00000001644) #11	CD4 (ENSBBBG00000013265) #12	ENSBBBG00000002685 #13	P3H3 (ENSBBBG00000013282) #14	GNB3 (ENSBBBG00000001619) #15	CDCA3 (ENSBBBG00000013314) #16	USP5 (ENSBBBG00000013362) #17	TPI1 (ENSBBBG00000013389) #18	SPSB2 (ENSBBBG00000001570) #19	LRRC23 (ENSBBBG00000001562) #20	ENO2 (ENSBBBG00000013486) #21	ATN1 (ENSBBBG00000013523) #22	C12orf57 (ENSBBBG00000013536) #23	PTPN6 (ENSBBBG00000013574) #24	PHB2 (ENSBBBG00000013615) #25	EMG1 (ENSBBBG00000013624) #26	LPCAT3 (ENSBBBG00000013637) #27	C1S (ENSBBBG00000002855) #28	C1R (ENSBBBG00000013692) #29
Siberian musk deer	MODERN SPECIES	1247	PIANP (ENSMMSG00000021673) #7	COPS7A (ENSMMSG00000021708) #8	MLF2 (ENSMMSG00000021729) #9	PTMS (ENSMMSG00000021756) #10	LAG3 (ENSMMSG00000021775) #11	CD4 (ENSMMSG00000021846) #12	GPR162 (ENSMMSG00000021887) #13	P3H3 (ENSMMSG00000021912) #14	GNB3 (ENSMMSG00000021946) #15	CDCA3 (ENSMMSG00000021980) #16	USP5 (ENSMMSG00000022009) #17	TPI1 (ENSMMSG00000022032) #18	SPSB2 (ENSMMSG00000022073) #19	LRRC23 (ENSMMSG00000022095) #20	ENO2 (ENSMMSG00000022127) #21	ATN1 (ENSMMSG00000022203) #22	C12orf57 (ENSMMSG00000022213) #23	PTPN6 (ENSMMSG00000020364) #24	PHB2 (ENSMMSG00000020421) #25	EMG1 (ENSMMSG00000020458) #26	LPCAT3 (ENSMMSG00000020493) #27	C1S (ENSMMSG00000020518) #28	C1R (ENSMMSG00000020571) #29	C1RL (ENSMMSG00000020657)	RBP5 (ENSMMSG00000020698) #31	CLSTN3 (ENSMMSG00000020725) #32	PEX5 (ENSMMSG00000020788) #33	ENSMMSG00000021073 #34	ENSMMSG00000021129 ##35	ENSMMSG00000021653 ##35	ENSMMSG00000022481 ##35
Yarkand deer	MODERN SPECIES	14	PIANP (ENSCHYG00000024684) #7	COPS7A (ENSCHYG00000024633) #8	MLF2 (ENSCHYG00000024596) #9	ENSCHYG00000024584	LAG3 (ENSCHYG00000024522) #11	CD4 (ENSCHYG00000024477) #12	GPR162 (ENSCHYG00000024446) #13	P3H3 (ENSCHYG00000024241) #14	GNB3 (ENSCHYG00000024150) #15	CDCA3 (ENSCHYG00000024020) #16	USP5 (ENSCHYG00000023817) #17	TPI1 (ENSCHYG00000023734) #18	SPSB2 (ENSCHYG00000023711) #19	LRRC23 (ENSCHYG00000023669) #20	ENO2 (ENSCHYG00000023562) #21	ATN1 (ENSCHYG00000023488) #22	C12orf57 (ENSCHYG00000023367) #23	PTPN6 (ENSCHYG00000023189) #24	ENSCHYG00000022916 #25	EMG1 (ENSCHYG00000022863) #26	LPCAT3 (ENSCHYG00000022709) #27	C1S (ENSCHYG00000022602) #28	ENSCHYG00000022582	C1R (ENSCHYG00000022253) #29	C1RL (ENSCHYG00000022163)	RBP5 (ENSCHYG00000022108) #31	CLSTN3 (ENSCHYG00000021837) #32	PEX5 (ENSCHYG00000021374) #33	ENSCHYG00000021319	ENSCHYG00000020146 ##35	ENSCHYG00000019724 #36
Cetacea	ANCESTRAL SPECIES	8	ENSGT00510000049460 #7	ENSGT00940000159873 #8	ENSGT00390000005023.a #9	ENSGT01030000234816 #10	ENSGT01090000259985.b.b.b.a.a.a #11	ENSGT00390000001745 #12	ENSGT00390000017213.A #13	ENSGT00940000159164 #14	ENSGT01000000214413.b.a.b.a #15	ENSGT00390000017343 #16	ENSGT00940000156036 #17	ENSGT00390000013354.d.b #18	ENSGT01030000234629.A #19	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242 #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000157473 #28	ENSGT00940000155436.f	ENSGT00940000158621 #29	ENSGT00940000162495	ENSGT00940000162526 #31	ENSGT00950000183086.a.b #32	ENSGT00940000156605 #33	ENSGT00940000155987.b	ENSGT00940000160666	ENSGT00940000162400
Odontoceti	ANCESTRAL SPECIES	7	ENSGT00510000049460 #7	ENSGT00940000159873 #8	ENSGT00390000005023.a #9	ENSGT01030000234816 #10	ENSGT01090000259985.b.b.b.a.a.a #11	ENSGT00390000001745 #12	ENSGT00390000017213.A #13	ENSGT00940000159164 #14	ENSGT01000000214413.b.a.b.a #15	ENSGT00390000017343 #16	ENSGT00940000156036 #17	ENSGT00390000013354.d.b #18	ENSGT01030000234629.A #19	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242 #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000157473 #28	ENSGT00940000155436.f	ENSGT00940000158621 #29	ENSGT00940000162495	ENSGT00940000162526 #31	ENSGT00950000183086.a.b #32	ENSGT00940000156605 #33	ENSGT00940000155987.b	ENSGT00940000160666	ENSGT00940000162400
Odontoceti_a	ANCESTRAL SPECIES	6	ENSGT00510000049460 #7	ENSGT00940000159873 #8	ENSGT00390000005023.a #9	ENSGT01030000234816 #10	ENSGT01090000259985.b.b.b.a.a.a #11	ENSGT00390000001745 #12	ENSGT00390000017213.A #13	ENSGT00940000159164 #14	ENSGT01000000214413.b.a.b.a #15	ENSGT00390000017343 #16	ENSGT00940000156036 #17	ENSGT00390000013354.d.b #18	ENSGT01030000234629.A #19	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242 #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000157473 #28	ENSGT00940000158621 #29	ENSGT00940000162495	ENSGT00940000162526 #31	ENSGT00950000183086.a.b #32	ENSGT00940000156605 #33	ENSGT00940000155987.b	ENSGT00940000160666	ENSGT00940000162400	ENSGT00390000009359.a
Odontoceti_b	ANCESTRAL SPECIES	7	ENSGT00940000159873 #8	ENSGT00390000005023.a #9	ENSGT01030000234816 #10	ENSGT01090000259985.b.b.b.a.a.a #11	ENSGT00390000001745 #12	ENSGT00390000017213.A #13	ENSGT00940000159164 #14	ENSGT01000000214413.b.a.b.a #15	ENSGT00390000017343 #16	ENSGT00940000156036 #17	ENSGT00390000013354.d.b #18	ENSGT01030000234629.A #19	ENSGT00940000153430.a.b.j	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242 #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000157473 #28	ENSGT00940000158621 #29	ENSGT00940000162495	ENSGT00940000162526 #31	ENSGT00950000183086.a.b #32	ENSGT00940000156605 #33	ENSGT00940000155987.b	ENSGT00940000160666	ENSGT00940000162400	ENSGT00390000009359.a
Monodontidae	ANCESTRAL SPECIES	6	ENSGT00940000159873 #8	ENSGT00390000005023.a #9	ENSGT01030000234816 #10	ENSGT01090000259985.b.b.b.a.a.a #11	ENSGT00390000001745 #12	ENSGT00390000017213.A #13	ENSGT00940000159164 #14	ENSGT01000000214413.b.a.b.a #15	ENSGT00390000017343 #16	ENSGT00940000156036 #17	ENSGT00390000013354.d.b #18	ENSGT01030000234629.A #19	ENSGT00940000153430.a.b.j	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242 #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000157473 #28	ENSGT00940000158621 #29	ENSGT00940000162495	ENSGT00940000162526 #31	ENSGT00950000183086.a.b #32	ENSGT00940000156605 #33	ENSGT00940000155987.b	ENSGT00940000160666	ENSGT00940000162400	ENSGT00390000009359.a
Narwhal	MODERN SPECIES	313	COPS7A (ENSMMNG00015015318) #8	MLF2 (ENSMMNG00015015337) #9	PTMS (ENSMMNG00015015353) #10	LAG3 (ENSMMNG00015015366) #11	CD4 (ENSMMNG00015015391) #12	GPR162 (ENSMMNG00015015414) #13	P3H3 (ENSMMNG00015015434) #14	GNB3 (ENSMMNG00015015448) #15	CDCA3 (ENSMMNG00015015481) #16	USP5 (ENSMMNG00015015510) #17	TPI1 (ENSMMNG00015015764) #18	SPSB2 (ENSMMNG00015015797) #19	ENSMMNG00015015832	LRRC23 (ENSMMNG00015015931) #20	ENO2 (ENSMMNG00015016116) #21	ATN1 (ENSMMNG00015016194) #22	C12orf57 (ENSMMNG00015016278) #23	PTPN6 (ENSMMNG00015016375) #24	PHB2 (ENSMMNG00015016550) #25	EMG1 (ENSMMNG00015016611) #26	LPCAT3 (ENSMMNG00015016648) #27	C1S (ENSMMNG00015016694) #28	C1R (ENSMMNG00015016776) #29	C1RL (ENSMMNG00015016894)	ENSMMNG00015016913 #31	CLSTN3 (ENSMMNG00015016951) #32	PEX5 (ENSMMNG00015016996) #33	CD163 (ENSMMNG00015017218)	CLEC4E (ENSMMNG00015017338)	ENSMMNG00015017373	NECAP1 (ENSMMNG00015017410)
Beluga whale	MODERN SPECIES	23	MLF2 (ENSDLEG00000015348) #9	LAG3 (ENSDLEG00000015366) #11	CD4 (ENSDLEG00000015440) #12	GPR162 (ENSDLEG00000015459) #13	P3H3 (ENSDLEG00000015481) #14	ENSDLEG00000015588 #15	ENSDLEG00000015552 #15	ENSDLEG00000015607 #16	ENSDLEG00000015616 #16	USP5 (ENSDLEG00000015635) #17	TPI1 (ENSDLEG00000015660) #18	SPSB2 (ENSDLEG00000015683) #19	ENSDLEG00000015696	LRRC23 (ENSDLEG00000015705) #20	ENO2 (ENSDLEG00000015736) #21	ATN1 (ENSDLEG00000015753) #22	CUNH12orf57 (ENSDLEG00000015776) #23	PTPN6 (ENSDLEG00000015801) #24	ENSDLEG00000015827 #25	EMG1 (ENSDLEG00000015851) #26	LPCAT3 (ENSDLEG00000015866) #27	C1S (ENSDLEG00000015889) #28	C1R (ENSDLEG00000015916) #29	C1RL (ENSDLEG00000015962)	CLSTN3 (ENSDLEG00000015994) #32	PEX5 (ENSDLEG00000016025) #33	CD163 (ENSDLEG00000016084)	CLEC4E (ENSDLEG00000016164)	ENSDLEG00000016176	NECAP1 (ENSDLEG00000016184)	C3AR1 (ENSDLEG00000016200)
Vaquita	MODERN SPECIES	1	COPS7A (ENSPSNG00000005746) #8	MLF2 (ENSPSNG00000005707) #9	PTMS (ENSPSNG00000005689) #10	LAG3 (ENSPSNG00000005663) #11	CD4 (ENSPSNG00000005617) #12	GPR162 (ENSPSNG00000005573) #13	P3H3 (ENSPSNG00000005493) #14	GNB3 (ENSPSNG00000005442) #15	ENSPSNG00000005389 #16	USP5 (ENSPSNG00000005317) #17	TPI1 (ENSPSNG00000005263) #18	SPSB2 (ENSPSNG00000005239) #19	ENSPSNG00000005219	LRRC23 (ENSPSNG00000005175) #20	ENO2 (ENSPSNG00000005075) #21	ATN1 (ENSPSNG00000005006) #22	C12orf57 (ENSPSNG00000004951) #23	PTPN6 (ENSPSNG00000004895) #24	PHB2 (ENSPSNG00000004823) #25	EMG1 (ENSPSNG00000004766) #26	LPCAT3 (ENSPSNG00000004738) #27	C1S (ENSPSNG00000004705) #28	C1R (ENSPSNG00000004652) #29	C1RL (ENSPSNG00000004616)	ENSPSNG00000004595 #31	CLSTN3 (ENSPSNG00000004552) #32	PEX5 (ENSPSNG00000004416) #33	CD163 (ENSPSNG00000004288)	CLEC4E (ENSPSNG00000004210)	NECAP1 (ENSPSNG00000011016)	C3AR1 (ENSPSNG00000010984)
Dolphin	MODERN SPECIES	3058						CD4 (ENSTTRG00000004621) #12	GPR162 (ENSTTRG00000021380) #13	P3H3 (ENSTTRG00000004668) #14	GNB3 (ENSTTRG00000004702) #15	CDCA3 (ENSTTRG00000004721) #16	USP5 (ENSTTRG00000004729) #17	TPI1 (ENSTTRG00000004742) #18	SPSB2 (ENSTTRG00000004755) #19	LRRC23 (ENSTTRG00000004761) #20	ENO2 (ENSTTRG00000004771) #21	ATN1 (ENSTTRG00000004784) #22	CUNH12orf57 (ENSTTRG00000004797) #23	ENSTTRG00000004801 #24	PHB2 (ENSTTRG00000004806) #25	EMG1 (ENSTTRG00000004810) #26	LPCAT3 (ENSTTRG00000004813) #27	C1S (ENSTTRG00000004816) #28	C1R (ENSTTRG00000004820) #29	C1RL (ENSTTRG00000004821)	RBP5 (ENSTTRG00000004823) #31	CLSTN3 (ENSTTRG00000004824) #32	PEX5 (ENSTTRG00000004827) #33
Sperm whale	MODERN SPECIES	72							GPR162 (ENSPCTG00005018455) #13	P3H3 (ENSPCTG00005018558) #14	GNB3 (ENSPCTG00005018716) #15	CDCA3 (ENSPCTG00005018866) #16	USP5 (ENSPCTG00005018965) #17	TPI1 (ENSPCTG00005019035) #18	SPSB2 (ENSPCTG00005019095) #19	LRRC23 (ENSPCTG00005019122) #20	ENO2 (ENSPCTG00005019273) #21	ATN1 (ENSPCTG00005019407) #22	CUNH12orf57 (ENSPCTG00005019445) #23	PTPN6 (ENSPCTG00005019528) #24	PHB2 (ENSPCTG00005019787) #25	EMG1 (ENSPCTG00005019876) #26	LPCAT3 (ENSPCTG00005019898) #27
Blue whale	MODERN SPECIES	1	PIANP (ENSBMSG00010014495) #7	COPS7A (ENSBMSG00010014553) #8	MLF2 (ENSBMSG00010014597) #9	PTMS (ENSBMSG00010014712) #10	LAG3 (ENSBMSG00010014753) #11	CD4 (ENSBMSG00010014905) #12	GPR162 (ENSBMSG00010014987) #13	P3H3 (ENSBMSG00010015046) #14	GNB3 (ENSBMSG00010015104) #15	CDCA3 (ENSBMSG00010015169) #16	USP5 (ENSBMSG00010015257) #17	TPI1 (ENSBMSG00010015329) #18	SPSB2 (ENSBMSG00010015375) #19	LRRC23 (ENSBMSG00010015406) #20	ENO2 (ENSBMSG00010015498) #21	ATN1 (ENSBMSG00010015747) #22	C12orf57 (ENSBMSG00010015774) #23	PTPN6 (ENSBMSG00010015835) #24	PHB2 (ENSBMSG00010015977) #25	EMG1 (ENSBMSG00010016055) #26	LPCAT3 (ENSBMSG00010016087) #27	C1S (ENSBMSG00010016127) #28	ENSBMSG00010016157	C1R (ENSBMSG00010016210) #29	C1RL (ENSBMSG00010016364)	RBP5 (ENSBMSG00010016389) #31	CLSTN3 (ENSBMSG00010016426) #32	PEX5 (ENSBMSG00010016544) #33	ENSBMSG00010016794	ENSBMSG00010016887 ##35	CD163 (ENSBMSG00010017704)
Camelidae	ANCESTRAL SPECIES	17	ENSGT00510000049460 #7	ENSGT00940000159873 #8	ENSGT00390000005023.a #9	ENSGT01030000234816 #10	ENSGT01090000259985.b.b.b.a.a.a #11	ENSGT00390000001745 #12	ENSGT00390000017213.A #13	ENSGT00940000159164 #14	ENSGT01000000214413.b.a.b.a #15	ENSGT00390000017343 #16	ENSGT00940000156036 #17	ENSGT00390000013354.d.b #18	ENSGT01030000234629.A #19	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242 #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a #25	ENSGT00390000000305 #26	ENSGT00940000157473 #28	ENSGT00940000158621 #29	ENSGT00940000162495	ENSGT00940000162526 #31	ENSGT00950000183086.a.b #32	ENSGT00940000156605 #33	ENSGT00940000157963.h ##35	ENSGT00940000155987.b	ENSGT00940000160666	ENSGT00940000162400	ENSGT00390000009359.a
Arabian camel	MODERN SPECIES	27	PIANP (ENSCDRG00005018699) #7	COPS7A (ENSCDRG00005018742) #8	MLF2 (ENSCDRG00005018784) #9	PTMS (ENSCDRG00005018819) #10	LAG3 (ENSCDRG00005018858) #11	CD4 (ENSCDRG00005018894) #12	GPR162 (ENSCDRG00005018926) #13	P3H3 (ENSCDRG00005018977) #14	GNB3 (ENSCDRG00005019041) #15	CDCA3 (ENSCDRG00005019067) #16	USP5 (ENSCDRG00005019114) #17	TPI1 (ENSCDRG00005019144) #18	ENSCDRG00005019197 #19	LRRC23 (ENSCDRG00005019257) #20	ENO2 (ENSCDRG00005019317) #21	ATN1 (ENSCDRG00005019382) #22	ENSCDRG00005019400 #23	PTPN6 (ENSCDRG00005019443) #24	PHB2 (ENSCDRG00005019555) #25	EMG1 (ENSCDRG00005019592) #26	C1S (ENSCDRG00005019604) #28	C1R (ENSCDRG00005019633) #29	C1RL (ENSCDRG00005019656)	RBP5 (ENSCDRG00005019669) #31	CLSTN3 (ENSCDRG00005019691) #32	PEX5 (ENSCDRG00005019720) #33	ENSCDRG00005020025 ##35	ENSCDRG00005021278 ##35	CD163 (ENSCDRG00005021289)	CLEC4E (ENSCDRG00005021309)	ENSCDRG00005021317
Alpaca	MODERN SPECIES	3568																ENSVPAG00000005790 #22
Suina	ANCESTRAL SPECIES	4	ENSGT00510000049460 #7	ENSGT00940000159873 #8	ENSGT00390000005023.a #9	ENSGT01030000234816 #10	ENSGT01090000259985.b.b.b.a.a.a #11	ENSGT00390000001745 #12	ENSGT00390000017213.A #13	ENSGT00940000159164 #14	ENSGT01000000214413.b.a.b.a #15	ENSGT00390000017343 #16	ENSGT00940000156036 #17	ENSGT00390000013354.d.b #18	ENSGT01030000234629.A #19	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242 #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000157473 #28	ENSGT00940000158621 #29	ENSGT00940000162495	ENSGT00940000162526 #31	ENSGT00950000183086.a.b #32	ENSGT00940000156605 #33	ENSGT00940000157963.h ##35	ENSGT00940000157963.g.b.a #35	ENSGT00560000078483	ENSGT00940000155987.b
Pig	MODERN SPECIES	13	ENSSSCG00000058867	COPS7A (ENSSSCG00000000691) #8	MLF2 (ENSSSCG00000000690) #9	ENSSSCG00000022176 #10	LAG3 (ENSSSCG00000000688) #11	CD4 (ENSSSCG00000000687) #12	GPR162 (ENSSSCG00000000680) #13	P3H3 (ENSSSCG00000000681) #14	GNB3 (ENSSSCG00000000682) #15	CDCA3 (ENSSSCG00000000683) #16	USP5 (ENSSSCG00000000684) #17	TPI1 (ENSSSCG00000000685) #18	SPSB2 (ENSSSCG00000025460) #19	LRRC23 (ENSSSCG00000000679) #20	ENO2 (ENSSSCG00000028373) #21	ATN1 (ENSSSCG00000025117) #22	C12orf57 (ENSSSCG00000040186) #23	PTPN6 (ENSSSCG00000025537) #24	PHB2 (ENSSSCG00000024655) #25	EMG1 (ENSSSCG00000026812) #26	LPCAT3 (ENSSSCG00000027205) #27	C1S (ENSSSCG00000055651) #28	C1R (ENSSSCG00000060530) #29	C1RL (ENSSSCG00000033913)	RBP5 (ENSSSCG00000054936) #31	CLSTN3 (ENSSSCG00000000672) #32	PEX5 (ENSSSCG00000025252) #33	ENSSSCG00000034914 ##35	ENSSSCG00000042161	ENSSSCG00000058930 ##35	CD163 (ENSSSCG00000033146)
Chacoan peccary	MODERN SPECIES	901	COPS7A (ENSCWAG00000004095) #8	MLF2 (ENSCWAG00000004129) #9	PTMS (ENSCWAG00000004167) #10	LAG3 (ENSCWAG00000004203) #11	ENSCWAG00000004259 #12	ENSCWAG00000004287 #12	GPR162 (ENSCWAG00000004328) #13	P3H3 (ENSCWAG00000004391) #14	GNB3 (ENSCWAG00000004448) #15	CDCA3 (ENSCWAG00000004557) #16	USP5 (ENSCWAG00000004654) #17	TPI1 (ENSCWAG00000004840) #18	SPSB2 (ENSCWAG00000004877) #19	LRRC23 (ENSCWAG00000004898) #20	ENO2 (ENSCWAG00000004978) #21	ATN1 (ENSCWAG00000005185) #22	C12orf57 (ENSCWAG00000005210) #23	PTPN6 (ENSCWAG00000005281) #24	PHB2 (ENSCWAG00000005427) #25	EMG1 (ENSCWAG00000005490) #26	LPCAT3 (ENSCWAG00000005512) #27	C1S (ENSCWAG00000005558) #28	C1R (ENSCWAG00000005587) #29	C1RL (ENSCWAG00000005659)	RBP5 (ENSCWAG00000005695) #31	ENSCWAG00000005724 #32	PEX5 (ENSCWAG00000005784) #33	ENSCWAG00000006006 ##35	ENSCWAG00000006066 #35	ENSCWAG00000006079 #35	ENSCWAG00000006094
Laurasiatheria_b	ANCESTRAL SPECIES	6	ENSGT00510000049460 #7	ENSGT00940000159873 #8	ENSGT00390000005023.a #9	ENSGT01030000234816 #10	ENSGT01090000259985.b.b.b.a.a.a #11	ENSGT00390000001745 #12	ENSGT00390000017213.A #13	ENSGT00940000159164 #14	ENSGT01000000214413.b.a.b.a #15	ENSGT00390000017343 #16	ENSGT00940000156036 #17	ENSGT00390000013354.d.b #18	ENSGT01030000234629.A #19	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242 #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000157473 #28	ENSGT00940000158621 #29	ENSGT00940000162495	ENSGT00940000162526 #31	ENSGT00950000183086.a.b #32	ENSGT00940000156605 #33	ENSGT00940000157963 #35	ENSGT00560000078483	ENSGT00940000164229	ENSGT00940000155987.b
Carnivora	ANCESTRAL SPECIES	3	ENSGT00510000049460 #7	ENSGT00940000159873 #8	ENSGT00390000005023.a #9	ENSGT01030000234816 #10	ENSGT01090000259985.b.b.b.a.a.a #11	ENSGT00390000001745 #12	ENSGT00390000017213.A #13	ENSGT00940000159164 #14	ENSGT01000000214413.b.a.b.a #15	ENSGT00390000017343 #16	ENSGT00940000156036 #17	ENSGT00390000013354.d.b #18	ENSGT01030000234629.A #19	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242 #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000157473 #28	ENSGT00940000158621 #29	ENSGT00940000162495	ENSGT00940000162526 #31	ENSGT00950000183086.a.b #32	ENSGT00940000156605 #33	ENSGT00940000157963 #35	ENSGT00560000078483	ENSGT00940000155987.b	ENSGT00940000160666
Caniformia	ANCESTRAL SPECIES	19	ENSGT00510000049460 #7	ENSGT00940000159873 #8	ENSGT00390000005023.a #9	ENSGT01030000234816 #10	ENSGT01090000259985.b.b.b.a.a.a #11	ENSGT00390000001745 #12	ENSGT00390000017213.A #13	ENSGT00940000159164 #14	ENSGT01000000214413.b.a.b.a #15	ENSGT00390000017343 #16	ENSGT00940000156036 #17	ENSGT00390000013354.d.b #18	ENSGT01030000234629.A #19	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242 #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000157473 #28	ENSGT00940000158621 #29	ENSGT00940000162495	ENSGT00940000162526 #31	ENSGT00950000183086.a.b #32	ENSGT00940000156605 #33	ENSGT00940000157963 #35	ENSGT00560000078483	ENSGT00940000155987.b	ENSGT00940000160666
Caniformia_b	ANCESTRAL SPECIES	17	ENSGT00510000049460 #7	ENSGT00940000159873 #8	ENSGT00390000005023.a #9	ENSGT01030000234816 #10	ENSGT01090000259985.b.b.b.a.a.a #11	ENSGT00390000001745 #12	ENSGT00390000017213.A #13	ENSGT00940000159164 #14	ENSGT01000000214413.b.a.b.a #15	ENSGT00390000017343 #16	ENSGT00940000156036 #17	ENSGT00390000013354.d.b #18	ENSGT01030000234629.A #19	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242 #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000157473 #28	ENSGT00940000158621 #29	ENSGT00940000162495	ENSGT00940000162526 #31	ENSGT00950000183086.a.b #32	ENSGT00940000156605 #33	ENSGT00940000157963 #35	ENSGT00560000078483	ENSGT00940000155987.b	ENSGT00940000160666
Ursidae	ANCESTRAL SPECIES	25	ENSGT00940000156904	ENSGT00510000049460 #7	ENSGT00940000159873.b #8	ENSGT00390000005023.a #9	ENSGT01090000259985.b.b.b.a.a.a #11	ENSGT00390000001745 #12	ENSGT00390000017213.A #13	ENSGT00940000159164 #14	ENSGT01000000214413.b.a.b.a #15	ENSGT00390000017343 #16	ENSGT00940000156036 #17	ENSGT00390000013354.d.b #18	ENSGT01030000234629.A #19	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a.b #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242 #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000157473 #28	ENSGT00940000158621 #29	ENSGT00950000183086.a.b #32	ENSGT00940000156605 #33	ENSGT00940000157963 #35	ENSGT00560000078483	ENSGT00940000155987.b	ENSGT00940000160666	ENSGT00940000162400	ENSGT00940000162938
Ursus	ANCESTRAL SPECIES	103	ENSGT00940000156904	ENSGT00510000049460 #7	ENSGT00940000159873.b #8	ENSGT00390000005023.a #9	ENSGT01090000259985.b.b.b.a.a.a #11	ENSGT00390000001745 #12	ENSGT00390000017213.A #13	ENSGT00940000159164 #14	ENSGT01000000214413.b.a.b.a #15	ENSGT00390000017343 #16	ENSGT00940000156036 #17	ENSGT00390000013354.d.b #18	ENSGT01030000234629.A #19	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a.b #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242 #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000157473 #28	ENSGT00940000158621 #29	ENSGT00940000162495	ENSGT00940000162526 #31	ENSGT00950000183086.a.b #32	ENSGT00940000156605 #33	ENSGT00940000157963 #35	ENSGT00560000078483	ENSGT00940000155987.b	ENSGT00940000160666
American black bear	MODERN SPECIES	1884					ENSUAMG00000026856 #12	GPR162 (ENSUAMG00000026858) #13	P3H3 (ENSUAMG00000026859) #14	GNB3 (ENSUAMG00000026878) #15	ENSUAMG00000026895 #16	ENSUAMG00000026899 #16	USP5 (ENSUAMG00000026901) #17	TPI1 (ENSUAMG00000026906) #18	SPSB2 (ENSUAMG00000026909) #19	LRRC23 (ENSUAMG00000026911) #20	ENO2 (ENSUAMG00000026916) #21	ATN1 (ENSUAMG00000026919) #22	C12orf57 (ENSUAMG00000026923) #23	PTPN6 (ENSUAMG00000026927) #24	PHB2 (ENSUAMG00000026938) #25	EMG1 (ENSUAMG00000026959) #26	LPCAT3 (ENSUAMG00000026964) #27
Polar bear	MODERN SPECIES	484	ING4 (ENSUMAG00000005092)	ZNF384 (ENSUMAG00000005073)	PIANP (ENSUMAG00000005067) #7	COPS7A (ENSUMAG00000005057) #8	MLF2 (ENSUMAG00000005049) #9	LAG3 (ENSUMAG00000005008) #11	CD4 (ENSUMAG00000004996) #12	P3H3 (ENSUMAG00000004936) #14	GNB3 (ENSUMAG00000004881) #15	CDCA3 (ENSUMAG00000004864) #16	USP5 (ENSUMAG00000004200) #17	TPI1 (ENSUMAG00000004130) #18	SPSB2 (ENSUMAG00000004129) #19	LRRC23 (ENSUMAG00000004125) #20	ENO2 (ENSUMAG00000004123) #21	ATN1 (ENSUMAG00000004101) #22	ENSUMAG00000004089 #23	PTPN6 (ENSUMAG00000003383) #24	PHB2 (ENSUMAG00000003256) #25	EMG1 (ENSUMAG00000003248) #26	LPCAT3 (ENSUMAG00000003237) #27	C1S (ENSUMAG00000003232) #28	C1R (ENSUMAG00000003227) #29	C1RL (ENSUMAG00000003224)	RBP5 (ENSUMAG00000003222) #31	CLSTN3 (ENSUMAG00000003194) #32	PEX5 (ENSUMAG00000003162) #33	ENSUMAG00000003145 #35	ENSUMAG00000003138	CD163 (ENSUMAG00000003115)	CLEC4E (ENSUMAG00000003105)
Giant Panda	MODERN SPECIES	7	PIANP (ENSAMEG00000014112) #7	COPS7A (ENSAMEG00000014096) #8	MLF2 (ENSAMEG00000014077) #9	ENSAMEG00000014074	LAG3 (ENSAMEG00000014063) #11	CD4 (ENSAMEG00000014043) #12	GPR162 (ENSAMEG00000014035) #13	P3H3 (ENSAMEG00000014022) #14	GNB3 (ENSAMEG00000013993) #15	CDCA3 (ENSAMEG00000013985) #16	USP5 (ENSAMEG00000013920) #17	ENSAMEG00000027919 #18	SPSB2 (ENSAMEG00000026509) #19	LRRC23 (ENSAMEG00000013885) #20	ENO2 (ENSAMEG00000013841) #21	ATN1 (ENSAMEG00000013826) #22	C12orf57 (ENSAMEG00000013823) #23	PTPN6 (ENSAMEG00000013783) #24	PHB2 (ENSAMEG00000013760) #25	EMG1 (ENSAMEG00000013753) #26	LPCAT3 (ENSAMEG00000013733) #27	C1S (ENSAMEG00000013668) #28	C1R (ENSAMEG00000013566) #29	CLSTN3 (ENSAMEG00000013498) #32	PEX5 (ENSAMEG00000013470) #33	ENSAMEG00000013450 #35	ENSAMEG00000029290	ENSAMEG00000013414	ENSAMEG00000013399	CLEC4D (ENSAMEG00000013378)	CLEC4A (ENSAMEG00000016975)
Mustelinae	ANCESTRAL SPECIES	95	ENSGT00510000049460 #7	ENSGT00940000159873 #8	ENSGT00390000005023.a #9	ENSGT01030000234816 #10	ENSGT01090000259985.b.b.b.a.a.a #11	ENSGT00390000001745 #12	ENSGT00390000017213.A #13	ENSGT00940000159164 #14	ENSGT01000000214413.b.a.b.a #15	ENSGT00390000017343 #16	ENSGT00940000156036 #17	ENSGT00390000013354.d.b #18	ENSGT01030000234629.A #19	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242 #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000157473 #28	ENSGT00940000158621 #29	ENSGT00940000162495	ENSGT00940000162526 #31	ENSGT00950000183086.a.b #32	ENSGT00940000156605 #33	ENSGT00940000157963 #35	ENSGT00560000078483	ENSGT00940000155987.b	ENSGT00940000160666
Ferret	MODERN SPECIES	284	COPS7A (ENSMPUG00000016835) #8	MLF2 (ENSMPUG00000016834) #9	PTMS (ENSMPUG00000016830) #10	ENSMPUG00000016828	LAG3 (ENSMPUG00000016825) #11	CD4 (ENSMPUG00000016809) #12	GPR162 (ENSMPUG00000016806) #13	P3H3 (ENSMPUG00000016793) #14	GNB3 (ENSMPUG00000016783) #15	CDCA3 (ENSMPUG00000016781) #16	USP5 (ENSMPUG00000016778) #17	ENSMPUG00000016774 #18	SPSB2 (ENSMPUG00000016772) #19	LRRC23 (ENSMPUG00000016771) #20	ENO2 (ENSMPUG00000016769) #21	ATN1 (ENSMPUG00000016768) #22	PTPN6 (ENSMPUG00000016767) #24	PHB2 (ENSMPUG00000016765) #25	EMG1 (ENSMPUG00000016763) #26	LPCAT3 (ENSMPUG00000016762) #27	C1S (ENSMPUG00000016761) #28	C1R (ENSMPUG00000016760) #29	C1RL (ENSMPUG00000016759)	RBP5 (ENSMPUG00000016758) #31	CLSTN3 (ENSMPUG00000016757) #32	PEX5 (ENSMPUG00000016756) #33	ENSMPUG00000016754 #35	ENSMPUG00000016753	ENSMPUG00000016752	ENSMPUG00000016751	CD163 (ENSMPUG00000016750)
American mink	MODERN SPECIES	333	PIANP (ENSNVIG00000024637) #7	CSN7A (ENSNVIG00000024636) #8	MLF2 (ENSNVIG00000024635) #9	PTMS (ENSNVIG00000024634) #10	LAG3 (ENSNVIG00000024633) #11	CD4 (ENSNVIG00000024632) #12	GPR162 (ENSNVIG00000024631) #13	P3H3 (ENSNVIG00000024630) #14	GNB3 (ENSNVIG00000024629) #15	CDCA3 (ENSNVIG00000024628) #16	USP5 (ENSNVIG00000024627) #17	TPI1 (ENSNVIG00000024626) #18	SPSB2 (ENSNVIG00000024625) #19	LRC23 (ENSNVIG00000024624) #20	ENO2 (ENSNVIG00000024623) #21	ATN1 (ENSNVIG00000024622) #22	ENSNVIG00000024621 #23	PTPN6 (ENSNVIG00000024620) #24	PHB2 (ENSNVIG00000024616) #25	EMG1 (ENSNVIG00000024615) #26	LPCAT3 (ENSNVIG00000024614) #27	C1S (ENSNVIG00000024613) #28	C1R (ENSNVIG00000024612) #29	C1RL (ENSNVIG00000024611)	RET5 (ENSNVIG00000024610) #31	CLSTN3 (ENSNVIG00000024609) #32	PEX5 (ENSNVIG00000024606) #33	ENSNVIG00000024602 #35	ENSNVIG00000024601	CD163 (ENSNVIG00000024600)
Canidae	ANCESTRAL SPECIES	8	ENSGT00510000049460 #7	ENSGT00940000159873 #8	ENSGT00390000005023.a #9	ENSGT01030000234816 #10	ENSGT01090000259985.b.b.b.a.a.a #11	ENSGT00390000001745 #12	ENSGT00390000017213.A #13	ENSGT00940000159164 #14	ENSGT01000000214413.b.a.b.a #15	ENSGT00390000017343 #16	ENSGT00940000156036 #17	ENSGT00390000013354.d.b #18	ENSGT01030000234629.A #19	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242 #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000157473 #28	ENSGT00940000158621 #29	ENSGT00940000162495	ENSGT00940000162526 #31	ENSGT00950000183086.a.b #32	ENSGT00940000156605 #33	ENSGT00940000157963 #35	ENSGT00560000078483	ENSGT00940000155987.b	ENSGT00940000160666
Canis_lupus	ANCESTRAL SPECIES	14	ENSGT00510000049460 #7	ENSGT00940000159873 #8	ENSGT00390000005023.a #9	ENSGT01030000234816 #10	ENSGT01090000259985.b.b.b.a.a.a #11	ENSGT00390000001745 #12	ENSGT00390000017213.A #13	ENSGT00940000159164 #14	ENSGT01000000214413.b.a.b.a #15	ENSGT00390000017343 #16	ENSGT00940000156036 #17	ENSGT00390000013354.d.b #18	ENSGT01030000234629.A #19	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242 #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000157473 #28	ENSGT00940000158621 #29	ENSGT00940000162495	ENSGT00940000162526 #31	ENSGT00950000183086.a.b #32	ENSGT00940000156605 #33	ENSGT00940000157963 #35	ENSGT00560000078483	ENSGT00940000155987.b	ENSGT00940000160666
Dingo	MODERN SPECIES	56	PIANP (ENSCAFG00020002942) #7	COPS7A (ENSCAFG00020002947) #8	MLF2 (ENSCAFG00020002950) #9	ENSCAFG00020002965 #10	LAG3 (ENSCAFG00020002976) #11	CD4 (ENSCAFG00020002986) #12	GPR162 (ENSCAFG00020002990) #13	P3H3 (ENSCAFG00020003004) #14	GNB3 (ENSCAFG00020003050) #15	CDCA3 (ENSCAFG00020003055) #16	USP5 (ENSCAFG00020003066) #17	TPI1 (ENSCAFG00020003073) #18	SPSB2 (ENSCAFG00020003076) #19	LRRC23 (ENSCAFG00020003078) #20	ENO2 (ENSCAFG00020003086) #21	ATN1 (ENSCAFG00020003089) #22	C12orf57 (ENSCAFG00020003105) #23	PTPN6 (ENSCAFG00020003109) #24	PHB2 (ENSCAFG00020003126) #25	EMG1 (ENSCAFG00020003127) #26	LPCAT3 (ENSCAFG00020003130) #27	C1S (ENSCAFG00020003135) #28	C1R (ENSCAFG00020003140) #29	C1RL (ENSCAFG00020003144)	RBP5 (ENSCAFG00020003147) #31	CLSTN3 (ENSCAFG00020003152) #32	PEX5 (ENSCAFG00020003159) #33	ENSCAFG00020003201 #35	ENSCAFG00020003421	CD163 (ENSCAFG00020003427)	CLEC4E (ENSCAFG00020003453)
Dog	MODERN SPECIES	19	PIANP (ENSCAFG00845028055) #7	COPS7A (ENSCAFG00845027958) #8	MLF2 (ENSCAFG00845027898) #9	PTMS (ENSCAFG00845027847) #10	LAG3 (ENSCAFG00845027788) #11	CD4 (ENSCAFG00845027739) #12	GPR162 (ENSCAFG00845027631) #13	P3H3 (ENSCAFG00845027539) #14	GNB3 (ENSCAFG00845027447) #15	CDCA3 (ENSCAFG00845027345) #16	USP5 (ENSCAFG00845027217) #17	TPI1 (ENSCAFG00845027022) #18	SPSB2 (ENSCAFG00845026990) #19	LRRC23 (ENSCAFG00845026868) #20	ENO2 (ENSCAFG00845026633) #21	ATN1 (ENSCAFG00845026413) #22	C12orf57 (ENSCAFG00845026325) #23	PTPN6 (ENSCAFG00845026107) #24	PHB2 (ENSCAFG00845025797) #25	EMG1 (ENSCAFG00845025699) #26	LPCAT3 (ENSCAFG00845025601) #27	C1S (ENSCAFG00845025415) #28	C1R (ENSCAFG00845025120) #29	C1RL (ENSCAFG00845024953)	ENSCAFG00845024907 #31	CLSTN3 (ENSCAFG00845024611) #32	PEX5 (ENSCAFG00845024224) #33	ENSCAFG00845023990 #35	ENSCAFG00845023930	ENSCAFG00845023895	CD163 (ENSCAFG00845023298)
Red fox	MODERN SPECIES	18	ZNF384 (ENSVVUG00000011329)	PIANP (ENSVVUG00000011301) #7	COPS7A (ENSVVUG00000011285) #8	MLF2 (ENSVVUG00000011279) #9	LAG3 (ENSVVUG00000011272) #11	CD4 (ENSVVUG00000011267) #12	GPR162 (ENSVVUG00000011261) #13	P3H3 (ENSVVUG00000011231) #14	GNB3 (ENSVVUG00000011081) #15	CDCA3 (ENSVVUG00000011065) #16	USP5 (ENSVVUG00000011044) #17	ENSVVUG00000011024 #18	SPSB2 (ENSVVUG00000011016) #19	LRRC23 (ENSVVUG00000010999) #20	ENO2 (ENSVVUG00000010987) #21	ATN1 (ENSVVUG00000010945) #22	CUNH12orf57 (ENSVVUG00000010932) #23	PTPN6 (ENSVVUG00000010907) #24	ENSVVUG00000010819 #25	EMG1 (ENSVVUG00000010807) #26	LPCAT3 (ENSVVUG00000010795) #27	C1S (ENSVVUG00000010771) #28	C1R (ENSVVUG00000010758) #29	C1RL (ENSVVUG00000010755)	RBP5 (ENSVVUG00000010750) #31	CLSTN3 (ENSVVUG00000010740) #32	PEX5 (ENSVVUG00000010700) #33	ENSVVUG00000010676 #35	ENSVVUG00000010668	CD163 (ENSVVUG00000010646)	CLEC4E (ENSVVUG00000010608)
Felidae	ANCESTRAL SPECIES	2	ENSGT00510000049460 #7	ENSGT00940000159873 #8	ENSGT00390000005023.a #9	ENSGT01030000234816 #10	ENSGT01090000259985.b.b.b.a.a.a #11	ENSGT00390000001745 #12	ENSGT00390000017213.A #13	ENSGT00940000159164 #14	ENSGT01000000214413.b.a.b.a #15	ENSGT00390000017343 #16	ENSGT00940000156036 #17	ENSGT00390000013354.d.b #18	ENSGT01030000234629.A #19	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242 #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000157473 #28	ENSGT00940000158621 #29	ENSGT00940000162495	ENSGT00940000162526 #31	ENSGT00950000183086.a.b #32	ENSGT00940000156605 #33	ENSGT00940000157963 #35	ENSGT00560000078483	ENSGT00940000155987.b	ENSGT00940000160666
Panthera	ANCESTRAL SPECIES		ENSGT00510000049460 #7	ENSGT00940000159873 #8	ENSGT00390000005023.a #9	ENSGT01030000234816 #10	ENSGT01090000259985.b.b.b.a.a.a #11	ENSGT00390000001745 #12	ENSGT00390000017213.A #13	ENSGT00940000159164 #14	ENSGT01000000214413.b.a.b.a #15	ENSGT00390000017343 #16	ENSGT00940000156036 #17	ENSGT00390000013354.d.b #18	ENSGT01030000234629.A #19	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242 #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000157473 #28	ENSGT00940000158621 #29	ENSGT00940000162495	ENSGT00940000162526 #31	ENSGT00950000183086.a.b #32	ENSGT00940000156605 #33	ENSGT00940000157963 #35	ENSGT00560000078483	ENSGT00940000155987.b	ENSGT00940000160666
Panthera_a	ANCESTRAL SPECIES	5	ENSGT00510000049460 #7	ENSGT00940000159873 #8	ENSGT00390000005023.a #9	ENSGT01030000234816 #10	ENSGT01090000259985.b.b.b.a.a.a #11	ENSGT00390000001745 #12	ENSGT00390000017213.A #13	ENSGT00940000159164 #14	ENSGT01000000214413.b.a.b.a #15	ENSGT00390000017343 #16	ENSGT00940000156036 #17	ENSGT00390000013354.d.b #18	ENSGT01030000234629.A #19	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242 #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000157473 #28	ENSGT00940000158621 #29	ENSGT00940000162495	ENSGT00940000162526 #31	ENSGT00950000183086.a.b #32	ENSGT00940000156605 #33	ENSGT00940000157963 #35	ENSGT00560000078483	ENSGT00940000155987.b	ENSGT00940000160666
lion	MODERN SPECIES	7	PIANP (ENSPLOG00000002539) #7	COPS7A (ENSPLOG00000002565) #8	MLF2 (ENSPLOG00000002583) #9	PTMS (ENSPLOG00000002603) #10	LAG3 (ENSPLOG00000002630) #11	CD4 (ENSPLOG00000002666) #12	GPR162 (ENSPLOG00000002701) #13	P3H3 (ENSPLOG00000002749) #14	GNB3 (ENSPLOG00000002795) #15	CDCA3 (ENSPLOG00000002825) #16	USP5 (ENSPLOG00000002867) #17	TPI1 (ENSPLOG00000002909) #18	SPSB2 (ENSPLOG00000002952) #19	LRRC23 (ENSPLOG00000002997) #20	ENO2 (ENSPLOG00000003070) #21	ATN1 (ENSPLOG00000003157) #22	C12orf57 (ENSPLOG00000003182) #23	PTPN6 (ENSPLOG00000003233) #24	PHB2 (ENSPLOG00000003339) #25	EMG1 (ENSPLOG00000003379) #26	LPCAT3 (ENSPLOG00000003407) #27	C1S (ENSPLOG00000003432) #28	C1R (ENSPLOG00000003484) #29	C1RL (ENSPLOG00000003525)	RBP5 (ENSPLOG00000003551) #31	CLSTN3 (ENSPLOG00000003585) #32	PEX5 (ENSPLOG00000003652) #33	ENSPLOG00000003948 #35	ENSPLOG00000004116	CD163 (ENSPLOG00000004151)	CLEC4E (ENSPLOG00000004205)
leopard	MODERN SPECIES	45	PIANP (ENSPPRG00000007131) #7	COPS7A (ENSPPRG00000008884) #8	ENSPPRG00000009219	PTMS (ENSPPRG00000009564) #10	LAG3 (ENSPPRG00000010078) #11	CD4 (ENSPPRG00000011287) #12	ENSPPRG00000012222 #13	P3H3 (ENSPPRG00000012543) #14	GNB3 (ENSPPRG00000013637) #15	CDCA3 (ENSPPRG00000014482) #16	USP5 (ENSPPRG00000020797) #17	TPI1 (ENSPPRG00000023572) #18	SPSB2 (ENSPPRG00000023327) #19	LRRC23 (ENSPPRG00000001223) #20	ENO2 (ENSPPRG00000005030) #21	ATN1 (ENSPPRG00000005953) #22	C12orf57 (ENSPPRG00000006711) #23	PTPN6 (ENSPPRG00000008384) #24	ENSPPRG00000008605	PHB2 (ENSPPRG00000011140) #25	EMG1 (ENSPPRG00000012350) #26	LPCAT3 (ENSPPRG00000012613) #27	C1S (ENSPPRG00000013655) #28	C1R (ENSPPRG00000015378) #29	C1RL (ENSPPRG00000020793)	RBP5 (ENSPPRG00000022406) #31	CLSTN3 (ENSPPRG00000022969) #32	PEX5 (ENSPPRG00000001418) #33	ENSPPRG00000012515 #35	ENSPPRG00000013375	CD163 (ENSPPRG00000023017)
Tiger	MODERN SPECIES	306	COPS7A (ENSPTIG00000011947) #8	MLF2 (ENSPTIG00000010093) #9	PTMS (ENSPTIG00000009333) #10	ENSPTIG00000008812	LAG3 (ENSPTIG00000008140) #11	CD4 (ENSPTIG00000006621) #12	ENSPTIG00000005722 #13	P3H3 (ENSPTIG00000003404) #14	GNB3 (ENSPTIG00000000824) #15	CDCA3 (ENSPTIG00000021746) #16	USP5 (ENSPTIG00000020715) #17	TPI1 (ENSPTIG00000020566) #18	SPSB2 (ENSPTIG00000020204) #19	LRRC23 (ENSPTIG00000019167) #20	ENO2 (ENSPTIG00000016106) #21	ATN1 (ENSPTIG00000012538) #22	C12orf57 (ENSPTIG00000011489) #23	PTPN6 (ENSPTIG00000008200) #24	PHB2 (ENSPTIG00000002634) #25	EMG1 (ENSPTIG00000000358) #26	LPCAT3 (ENSPTIG00000021406) #27	C1S (ENSPTIG00000021139) #28	C1R (ENSPTIG00000019514) #29	C1RL (ENSPTIG00000018833)	RBP5 (ENSPTIG00000018369) #31	CLSTN3 (ENSPTIG00000018008) #32	PEX5 (ENSPTIG00000013475) #33	ENSPTIG00000013283	CD163 (ENSPTIG00000010909)	CLEC4E (ENSPTIG00000009417)	CLEC4D (ENSPTIG00000009303)
Cat	MODERN SPECIES	238	PIANP (ENSFCAG00000024891) #7	COPS7A (ENSFCAG00000043178) #8	ENSFCAG00000032640	PTMS (ENSFCAG00000043997) #10	LAG3 (ENSFCAG00000006886) #11	CD4 (ENSFCAG00000004269) #12	GPR162 (ENSFCAG00000024524) #13	P3H3 (ENSFCAG00000004270) #14	GNB3 (ENSFCAG00000012371) #15	CDCA3 (ENSFCAG00000004274) #16	USP5 (ENSFCAG00000004276) #17	TPI1 (ENSFCAG00000030274) #18	SPSB2 (ENSFCAG00000022946) #19	LRRC23 (ENSFCAG00000004280) #20	ENO2 (ENSFCAG00000004282) #21	ATN1 (ENSFCAG00000026172) #22	CB4H12orf57 (ENSFCAG00000004285) #23	PTPN6 (ENSFCAG00000004287) #24	PHB2 (ENSFCAG00000016328) #25	EMG1 (ENSFCAG00000004288) #26	LPCAT3 (ENSFCAG00000004289) #27	C1S (ENSFCAG00000000175) #28	ENSFCAG00000000177 #29	ENSFCAG00000048167 #29	ENSFCAG00000000179	ENSFCAG00000052347	RBP5 (ENSFCAG00000040547) #31	CLSTN3 (ENSFCAG00000000183) #32	PEX5 (ENSFCAG00000000184) #33	ENSFCAG00000035965	ENSFCAG00000038766
Laurasiatheria_c	ANCESTRAL SPECIES	5	ENSGT00510000049460 #7	ENSGT00940000159873 #8	ENSGT00390000005023.a #9	ENSGT01030000234816 #10	ENSGT01090000259985.b.b.b.a.a.a #11	ENSGT00390000001745 #12	ENSGT00390000017213.A #13	ENSGT00940000159164 #14	ENSGT01000000214413.b.a.b.a #15	ENSGT00390000017343 #16	ENSGT00940000156036 #17	ENSGT00390000013354.d.b #18	ENSGT01030000234629.A #19	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242 #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000157473 #28	ENSGT00940000158621 #29	ENSGT00940000162495	ENSGT00940000162526 #31	ENSGT00950000183086.a.b #32	ENSGT00940000156605 #33	ENSGT00940000157963 #35	ENSGT00560000078483	ENSGT00940000164229	ENSGT00940000155987.b
Equus	ANCESTRAL SPECIES	28	ENSGT00510000049460 #7	ENSGT00940000159873 #8	ENSGT00390000005023.a #9	ENSGT01030000234816 #10	ENSGT01090000259985.b.b.b.a.a.a #11	ENSGT00390000001745 #12	ENSGT00390000017213.A #13	ENSGT00940000159164 #14	ENSGT01000000214413.b.a.b.a #15	ENSGT00390000017343 #16	ENSGT00940000156036 #17	ENSGT00390000013354.d.b #18	ENSGT01030000234629.A #19	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242 #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000157473 #28	ENSGT00940000158621 #29	ENSGT00940000162495	ENSGT00940000162526 #31	ENSGT00950000183086.a.b #32	ENSGT00940000156605 #33	ENSGT00940000157963 #35	ENSGT00560000078483	ENSGT00940000164229	ENSGT00940000155987.b
Donkey	MODERN SPECIES	14	PIANP (ENSEASG00005016141) #7	COPS7A (ENSEASG00005016138) #8	MLF2 (ENSEASG00005016135) #9	ENSEASG00005016131 #10	LAG3 (ENSEASG00005016128) #11	CD4 (ENSEASG00005016122) #12	GPR162 (ENSEASG00005016119) #13	P3H3 (ENSEASG00005016118) #14	GNB3 (ENSEASG00005016089) #15	CDCA3 (ENSEASG00005016075) #16	USP5 (ENSEASG00005016070) #17	SPSB2 (ENSEASG00005038597) #19	TPI1 (ENSEASG00005016069) #18	LRRC23 (ENSEASG00005016067) #20	ENO2 (ENSEASG00005016066) #21	ATN1 (ENSEASG00005016064) #22	C12orf57 (ENSEASG00005025431) #23	PTPN6 (ENSEASG00005016034) #24	PHB2 (ENSEASG00005016019) #25	EMG1 (ENSEASG00005028027) #26	LPCAT3 (ENSEASG00005016016) #27	C1S (ENSEASG00005016014) #28	C1R (ENSEASG00005016013) #29	C1RL (ENSEASG00005036234)	RBP5 (ENSEASG00005036449) #31	CLSTN3 (ENSEASG00005016008) #32	PEX5 (ENSEASG00005016004) #33	ENSEASG00005016000 #35	ENSEASG00005026036	CD163L1 (ENSEASG00005015998)	ENSEASG00005015996
Horse	MODERN SPECIES	27	ZNF384 (ENSECAG00000009490)	PIANP (ENSECAG00000015893) #7	COPS7A (ENSECAG00000015911) #8	MLF2 (ENSECAG00000022587) #9	ENSECAG00000042372 #10	LAG3 (ENSECAG00000002971) #11	CD4 (ENSECAG00000009049) #12	ENSECAG00000054174	P3H3 (ENSECAG00000021815) #14	CDCA3 (ENSECAG00000014517) #16	USP5 (ENSECAG00000014532) #17	SPSB2 (ENSECAG00000033679) #19	TPI1 (ENSECAG00000015581) #18	LRRC23 (ENSECAG00000000386) #20	ENO2 (ENSECAG00000007386) #21	ATN1 (ENSECAG00000021403) #22	PTPN6 (ENSECAG00000000465) #24	PHB2 (ENSECAG00000016937) #25	EMG1 (ENSECAG00000022412) #26	LPCAT3 (ENSECAG00000023202) #27	C1S (ENSECAG00000009519) #28	C1R (ENSECAG00000021429) #29	C1RL (ENSECAG00000014251)	CLSTN3 (ENSECAG00000020326) #32	RBP5 (ENSECAG00000014695) #31	PEX5 (ENSECAG00000017111) #33	ENSECAG00000046287	ENSECAG00000004670 #35	ENSECAG00000038042	CD163L1 (ENSECAG00000012955)	CD163 (ENSECAG00000019111)
Chiroptera	ANCESTRAL SPECIES	4	ENSGT00510000049460 #7	ENSGT00940000159873 #8	ENSGT00390000005023.a #9	ENSGT01030000234816 #10	ENSGT01090000259985.b.b.b.a.a.a #11	ENSGT00390000001745 #12	ENSGT00390000017213.A #13	ENSGT00940000159164 #14	ENSGT01000000214413.b.a.b.a #15	ENSGT00390000017343 #16	ENSGT00940000156036 #17	ENSGT00390000013354.d.b #18	ENSGT01030000234629.A #19	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242 #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000157473 #28	ENSGT00940000158621 #29	ENSGT00940000162495	ENSGT00940000162526 #31	ENSGT00950000183086.a.b #32	ENSGT00940000156605 #33	ENSGT00940000157963 #35	ENSGT00940000155987.b	ENSGT00940000160666	ENSGT00940000162400
Microchiroptera	ANCESTRAL SPECIES	8	ENSGT00510000049460 #7	ENSGT00940000159873 #8	ENSGT00390000005023.a #9	ENSGT01030000234816 #10	ENSGT01090000259985.b.b.b.a.a.a #11	ENSGT00390000001745 #12	ENSGT00390000017213.A #13	ENSGT00940000159164 #14	ENSGT01000000214413.b.a.b.a #15	ENSGT00390000017343 #16	ENSGT00940000156036 #17	ENSGT00390000013354.d.b #18	ENSGT01030000234629.A #19	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242 #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000157473 #28	ENSGT00940000158621 #29	ENSGT00940000162495	ENSGT00940000162526 #31	ENSGT00950000183086.a.b #32	ENSGT00940000156605 #33	ENSGT00940000157963 #35	ENSGT00940000155987.b	ENSGT00940000160666	ENSGT00940000162400
Greater horseshoe bat	MODERN SPECIES	1	ENSRFEG00010002934	COPS7A (ENSRFEG00010002955) #8	MLF2 (ENSRFEG00010002982) #9	PTMS (ENSRFEG00010003014) #10	LAG3 (ENSRFEG00010003036) #11	CD4 (ENSRFEG00010003064) #12	GPR162 (ENSRFEG00010003086) #13	P3H3 (ENSRFEG00010003127) #14	GNB3 (ENSRFEG00010003179) #15	CDCA3 (ENSRFEG00010003221) #16	USP5 (ENSRFEG00010003273) #17	TPI1 (ENSRFEG00010003310) #18	SPSB2 (ENSRFEG00010003333) #19	LRRC23 (ENSRFEG00010003379) #20	ENO2 (ENSRFEG00010003434) #21	ATN1 (ENSRFEG00010003490) #22	C12orf57 (ENSRFEG00010003532) #23	PTPN6 (ENSRFEG00010003566) #24	PHB2 (ENSRFEG00010003691) #25	EMG1 (ENSRFEG00010003804) #26	LPCAT3 (ENSRFEG00010003822) #27	ENSRFEG00010003865	C1S (ENSRFEG00010003888) #28	C1R (ENSRFEG00010003937) #29	C1RL (ENSRFEG00010003986)	RBP5 (ENSRFEG00010004005) #31	CLSTN3 (ENSRFEG00010004041) #32	PEX5 (ENSRFEG00010004095) #33	ENSRFEG00010004181 #35	ENSRFEG00010004197	ENSRFEG00010004205
Microbat	MODERN SPECIES	947	ZNF384 (ENSMLUG00000013771)	PIANP (ENSMLUG00000004845) #7	COPS7A (ENSMLUG00000013776) #8	MLF2 (ENSMLUG00000013779) #9	PTMS (ENSMLUG00000013783) #10	LAG3 (ENSMLUG00000013787) #11	CD4 (ENSMLUG00000024020) #12	GPR162 (ENSMLUG00000022349) #13	P3H3 (ENSMLUG00000006754) #14	GNB3 (ENSMLUG00000006739) #15	CDCA3 (ENSMLUG00000006726) #16	USP5 (ENSMLUG00000013790) #17	TPI1 (ENSMLUG00000024989) #18	LRRC23 (ENSMLUG00000013800) #20	ENO2 (ENSMLUG00000013803) #21	ENSMLUG00000024674 #22	C12orf57 (ENSMLUG00000001004) #23	PTPN6 (ENSMLUG00000001028) #24	PHB2 (ENSMLUG00000027501) #25	EMG1 (ENSMLUG00000009196) #26	LPCAT3 (ENSMLUG00000009212) #27	C1S (ENSMLUG00000028357) #28	C1R (ENSMLUG00000009230) #29	RBP5 (ENSMLUG00000009297) #31	CLSTN3 (ENSMLUG00000009304) #32	ENSMLUG00000009346 #33	ENSMLUG00000029332 #35	CD163 (ENSMLUG00000013459)	ENSMLUG00000028443	CLEC4E (ENSMLUG00000011581)	CLEC4D (ENSMLUG00000027823)
Megabat	MODERN SPECIES	4010																ATN1 (ENSPVAG00000006017) #22	C12orf57 (ENSPVAG00000006020) #23	PTPN6 (ENSPVAG00000006022) #24	PHB2 (ENSPVAG00000006028) #25	EMG1 (ENSPVAG00000006030) #26	LPCAT3 (ENSPVAG00000006032) #27	C1S (ENSPVAG00000006033) #28