Hystricomorpha	ANCESTRAL SPECIES	13	ENSGT00510000049460 #7	ENSGT00940000159873 #8	ENSGT00390000005023.a #9	ENSGT01030000234816 #10	ENSGT01090000259985.b.b.b.a.a.a #11	ENSGT00390000001745 #12	ENSGT00390000017213.A #13	ENSGT00940000159164 #14	ENSGT01000000214413.b.a.b.a #15	ENSGT00390000017343 #16	ENSGT00940000156036 #17	ENSGT00390000013354.d.b #18	ENSGT01030000234629.A #19	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242 #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000157473 #28	ENSGT00940000158621 #29	ENSGT00940000162495 #30	ENSGT00940000162526 #31	ENSGT00950000183086.a.b #32	ENSGT00940000156605 #33	ENSGT00940000157963	ENSGT00940000155987.b #34	ENSGT00940000163606 #35	ENSGT00940000160666 #36
Hystricomorpha_a	ANCESTRAL SPECIES	6	ENSGT00510000049460 #7	ENSGT00940000159873 #8	ENSGT00390000005023.a #9	ENSGT01030000234816 #10	ENSGT01090000259985.b.b.b.a.a.a #11	ENSGT00390000001745 #12	ENSGT00390000017213.A #13	ENSGT00940000159164 #14	ENSGT01000000214413.b.a.b.a #15	ENSGT00390000017343 #16	ENSGT00940000156036 #17	ENSGT00390000013354.d.b #18	ENSGT01030000234629.A #19	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242 #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000157473 #28	ENSGT00940000158621 #29	ENSGT00940000162495 #30	ENSGT00940000162526 #31	ENSGT00950000183086.a.b #32	ENSGT00940000156605 #33	ENSGT00940000155987.b #34	ENSGT00940000163606 #35	ENSGT00940000160666 #36	ENSGT00940000162400 #37
Hystricomorpha_b	ANCESTRAL SPECIES	2	ENSGT00510000049460 #7	ENSGT00940000159873 #8	ENSGT00390000005023.a #9	ENSGT01030000234816 #10	ENSGT01090000259985.b.b.b.a.a.a #11	ENSGT00390000001745 #12	ENSGT00390000017213.A #13	ENSGT00940000159164 #14	ENSGT01000000214413.b.a.b.a #15	ENSGT00390000017343 #16	ENSGT00940000156036 #17	ENSGT00390000013354.d.b #18	ENSGT01030000234629.A #19	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242 #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000157473 #28	ENSGT00940000158621 #29	ENSGT00940000162495 #30	ENSGT00940000162526 #31	ENSGT00950000183086.a.b #32	ENSGT00940000156605 #33	ENSGT00940000155987.b #34	ENSGT00940000163606 #35	ENSGT00940000160666 #36	ENSGT00940000162400 #37
Long-tailed chinchilla	MODERN SPECIES	120	PIANP (ENSCLAG00000016394) #7	COPS7A (ENSCLAG00000014244) #8	MLF2 (ENSCLAG00000013739) #9	PTMS (ENSCLAG00000016337) #10	LAG3 (ENSCLAG00000014680) #11	CD4 (ENSCLAG00000016197) #12	GPR162 (ENSCLAG00000015020) #13	P3H3 (ENSCLAG00000012569) #14	GNB3 (ENSCLAG00000014669) #15	CDCA3 (ENSCLAG00000013619) #16	USP5 (ENSCLAG00000015551) #17	TPI1 (ENSCLAG00000016645) #18	SPSB2 (ENSCLAG00000014822) #19	LRRC23 (ENSCLAG00000016347) #20	ENO2 (ENSCLAG00000015698) #21	ATN1 (ENSCLAG00000016679) #22	C12orf57 (ENSCLAG00000015538) #23	PTPN6 (ENSCLAG00000013644) #24	PHB2 (ENSCLAG00000015902) #25	EMG1 (ENSCLAG00000015067) #26	LPCAT3 (ENSCLAG00000015685) #27	C1S (ENSCLAG00000015517) #28	C1R (ENSCLAG00000015939) #29	C1RL (ENSCLAG00000017098) #30	RBP5 (ENSCLAG00000015079) #31	CLSTN3 (ENSCLAG00000013125) #32	PEX5 (ENSCLAG00000014902) #33	CD163 (ENSCLAG00000016131) #34	ENSCLAG00000014034 #35	CLEC4E (ENSCLAG00000014802) #36	CLEC4D (ENSCLAG00000015345) #37
Degu	MODERN SPECIES	219	COPS7A (ENSODEG00000002432) #8	MLF2 (ENSODEG00000002383) #9	ENSODEG00000002310 #10	LAG3 (ENSODEG00000002278) #11	ENSODEG00000002251	ENSODEG00000018791	GPR162 (ENSODEG00000003518) #13	P3H3 (ENSODEG00000003441) #14	GNB3 (ENSODEG00000003424) #15	CDCA3 (ENSODEG00000003383) #16	USP5 (ENSODEG00000002978) #17	ENSODEG00000002846 #18	SPSB2 (ENSODEG00000002806) #19	LRRC23 (ENSODEG00000002781) #20	ENO2 (ENSODEG00000002668) #21	ATN1 (ENSODEG00000003478) #22	C12orf57 (ENSODEG00000003444) #23	PTPN6 (ENSODEG00000003352) #24	ENSODEG00000003109 #25	EMG1 (ENSODEG00000004059) #26	LPCAT3 (ENSODEG00000004029) #27	C1S (ENSODEG00000003726) #28	ENSODEG00000003709 #29	C1RL (ENSODEG00000003650) #30	RBP5 (ENSODEG00000003636) #31	CLSTN3 (ENSODEG00000002598) #32	PEX5 (ENSODEG00000002469) #33	ENSODEG00000002405	ENSODEG00000018806
Naked mole-rat female	MODERN SPECIES	24	PIANP (ENSHGLG00000003689) #7	COPS7A (ENSHGLG00000032684) #8	MLF2 (ENSHGLG00000003883) #9	PTMS (ENSHGLG00000038669) #10	LAG3 (ENSHGLG00000004095) #11	CD4 (ENSHGLG00000004194) #12	GPR162 (ENSHGLG00000004580) #13	P3H3 (ENSHGLG00000004948) #14	GNB3 (ENSHGLG00000005327) #15	CDCA3 (ENSHGLG00000005685) #16	USP5 (ENSHGLG00000006008) #17	TPI1 (ENSHGLG00000047042) #18	SPSB2 (ENSHGLG00000000850) #19	LRRC23 (ENSHGLG00000000873) #20	ENO2 (ENSHGLG00000040320) #21	ATN1 (ENSHGLG00000000959) #22	C12orf57 (ENSHGLG00000000977) #23	PTPN6 (ENSHGLG00000001036) #24	PHB2 (ENSHGLG00000001214) #25	EMG1 (ENSHGLG00000001300) #26	LPCAT3 (ENSHGLG00000001329) #27	C1S (ENSHGLG00000038360) #28	C1R (ENSHGLG00000001453) #29	C1RL (ENSHGLG00000042250) #30	ENSHGLG00000001579 #31	CLSTN3 (ENSHGLG00000001611) #32	ENSHGLG00000035824	ENSHGLG00000001679 #33	ENSHGLG00000037231	ENSHGLG00000001870 #36	CLEC4D (ENSHGLG00000047579) #37