Euarchontoglires_A	ANCESTRAL SPECIES	5	ENSGT00510000049460 #7	ENSGT00940000159873 #8	ENSGT00390000005023.a #9	ENSGT01030000234816	ENSGT01090000259985.b.b.b.a.a.a #11	ENSGT00390000001745 #12	ENSGT00390000017213.A #13	ENSGT00940000159164 #14	ENSGT01000000214413.b.a.b.a #15	ENSGT00390000017343 #16	ENSGT00940000156036 #17	ENSGT00390000013354.d.b #18	ENSGT01030000234629.A #19	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242 #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000157473 #28	ENSGT00940000158621 #29	ENSGT00940000162495 #30	ENSGT00940000162526	ENSGT00950000183086.a.b #31	ENSGT00940000156605 #32	ENSGT00940000157963	ENSGT00560000078483 #33	ENSGT00940000155987.b #34	ENSGT00940000160666 #36
Glires	ANCESTRAL SPECIES	4	ENSGT00510000049460 #7	ENSGT00940000159873 #8	ENSGT00390000005023.a #9	ENSGT01030000234816	ENSGT01090000259985.b.b.b.a.a.a #11	ENSGT00390000001745 #12	ENSGT00390000017213.A #13	ENSGT00940000159164 #14	ENSGT01000000214413.b.a.b.a #15	ENSGT00390000017343 #16	ENSGT00940000156036 #17	ENSGT00390000013354.d.b #18	ENSGT01030000234629.A #19	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242 #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000157473 #28	ENSGT00940000158621 #29	ENSGT00940000162495 #30	ENSGT00940000162526	ENSGT00950000183086.a.b #31	ENSGT00940000156605 #32	ENSGT00940000157963	ENSGT00560000078483 #33	ENSGT00940000155987.b #34	ENSGT00940000160666 #36
Rodentia	ANCESTRAL SPECIES	5	ENSGT00510000049460 #7	ENSGT00940000159873 #8	ENSGT00390000005023.a #9	ENSGT01030000234816	ENSGT01090000259985.b.b.b.a.a.a #11	ENSGT00390000001745 #12	ENSGT00390000017213.A #13	ENSGT00940000159164 #14	ENSGT01000000214413.b.a.b.a #15	ENSGT00390000017343 #16	ENSGT00940000156036 #17	ENSGT00390000013354.d.b #18	ENSGT01030000234629.A #19	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242 #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000157473 #28	ENSGT00940000158621 #29	ENSGT00940000162495 #30	ENSGT00940000162526	ENSGT00950000183086.a.b #31	ENSGT00940000156605 #32	ENSGT00940000157963	ENSGT00560000078483 #33	ENSGT00940000155987.b #34	ENSGT00940000163606 #35
Rodentia_B	ANCESTRAL SPECIES	35	ENSGT00510000049460 #7	ENSGT00940000159873 #8	ENSGT00390000005023.a #9	ENSGT01030000234816	ENSGT01090000259985.b.b.b.a.a.a #11	ENSGT00390000001745 #12	ENSGT00390000017213.A #13	ENSGT00940000159164 #14	ENSGT01000000214413.b.a.b.a #15	ENSGT00390000017343 #16	ENSGT00940000156036 #17	ENSGT00390000013354.d.b #18	ENSGT01030000234629.A #19	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242 #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000157473 #28	ENSGT00940000158621 #29	ENSGT00940000162495 #30	ENSGT00940000162526	ENSGT00950000183086.a.b #31	ENSGT00940000156605 #32	ENSGT00560000078483 #33	ENSGT00940000155987.b #34	ENSGT00940000163606 #35	ENSGT00940000160666 #36
Myomorpha	ANCESTRAL SPECIES	15	ENSGT00510000049460 #7	ENSGT00940000159873 #8	ENSGT00390000005023.a #9	ENSGT01030000234816	ENSGT01090000259985.b.b.b.a.a.a #11	ENSGT00390000001745 #12	ENSGT00390000017213.A #13	ENSGT00940000159164 #14	ENSGT01000000214413.b.a.b.a #15	ENSGT00390000017343 #16	ENSGT00940000156036 #17	ENSGT00390000013354.d.b #18	ENSGT01030000234629.A #19	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242 #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000157473 #28	ENSGT00940000158621 #29	ENSGT00940000162495 #30	ENSGT00940000162526	ENSGT00950000183086.a.b #31	ENSGT00940000156605 #32	ENSGT00560000078483 #33	ENSGT00940000155987.b #34	ENSGT00940000163606 #35	ENSGT00940000160666 #36
Muroidea	ANCESTRAL SPECIES	24	ENSGT00510000049460 #7	ENSGT00940000159873 #8	ENSGT00390000005023.a #9	ENSGT01030000234816	ENSGT01090000259985.b.b.b.a.a.a #11	ENSGT00390000001745 #12	ENSGT00390000017213.A #13	ENSGT00940000159164 #14	ENSGT01000000214413.b.a.b.a #15	ENSGT00390000017343 #16	ENSGT00940000156036 #17	ENSGT00390000013354.d.b #18	ENSGT01030000234629.A #19	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242 #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000157473 #28	ENSGT00940000158621 #29	ENSGT00940000162495 #30	ENSGT00940000162526	ENSGT00950000183086.a.b #31	ENSGT00940000156605 #32	ENSGT00560000078483 #33	ENSGT00940000155987.b #34	ENSGT00940000163606 #35	ENSGT00940000160666 #36
Muroidea_A	ANCESTRAL SPECIES	4	ENSGT00510000049460 #7	ENSGT00940000159873 #8	ENSGT00390000005023.a #9	ENSGT01100000264105 #10	ENSGT01090000259985.b.b.b.a.a.a #11	ENSGT00390000001745 #12	ENSGT00390000017213.A #13	ENSGT00940000159164 #14	ENSGT01000000214413.b.a.b.a #15	ENSGT00390000017343 #16	ENSGT00940000156036 #17	ENSGT00390000013354.d.b #18	ENSGT01030000234629.A #19	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242 #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000157473 #28	ENSGT00940000158621 #29	ENSGT00940000162495 #30	ENSGT00950000183086.a.b #31	ENSGT00940000156605 #32	ENSGT00560000078483 #33	ENSGT00940000155987.b #34	ENSGT00940000163606 #35	ENSGT00940000160666 #36	ENSGT00940000162400 #37
Cricetidae	ANCESTRAL SPECIES	3	ENSGT00510000049460 #7	ENSGT00940000159873 #8	ENSGT00390000005023.a #9	ENSGT01100000264105 #10	ENSGT01090000259985.b.b.b.a.a.a #11	ENSGT00390000001745 #12	ENSGT00390000017213.A #13	ENSGT00940000159164 #14	ENSGT01000000214413.b.a.b.a #15	ENSGT00390000017343 #16	ENSGT00940000156036 #17	ENSGT00390000013354.d.b #18	ENSGT01030000234629.A #19	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242.m ##23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000157473 #28	ENSGT00940000158621 #29	ENSGT00940000162495 #30	ENSGT00950000183086.a.b #31	ENSGT00940000156605 #32	ENSGT00560000078483 #33	ENSGT00940000155987.b #34	ENSGT00940000163606 #35	ENSGT00940000160666 #36	ENSGT00940000162400 #37
Cricetidae_B	ANCESTRAL SPECIES	14	ENSGT00510000049460 #7	ENSGT00940000159873 #8	ENSGT00390000005023.a #9	ENSGT01100000264105 #10	ENSGT01090000259985.b.b.b.a.a.a #11	ENSGT00390000001745 #12	ENSGT00390000017213.A #13	ENSGT00940000159164 #14	ENSGT01000000214413.b.a.b.a #15	ENSGT00390000017343 #16	ENSGT00940000156036 #17	ENSGT00390000013354.d.b #18	ENSGT01030000234629.A #19	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242.m ##23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000157473 #28	ENSGT00940000158621 #29	ENSGT00940000162495 #30	ENSGT00950000183086.a.b #31	ENSGT00940000156605 #32	ENSGT00560000078483 #33	ENSGT00940000155987.b #34	ENSGT00940000163606 #35	ENSGT00940000160666 #36	ENSGT00940000162400 #37
Northern American deer mouse	MODERN SPECIES	16	Pianp (ENSPEMG00000013120) #7	Cops7a (ENSPEMG00000002860) #8	Mlf2 (ENSPEMG00000013094) #9	ENSPEMG00000016593 #10	Lag3 (ENSPEMG00000018743) #11	ENSPEMG00000024347 #12	Gpr162 (ENSPEMG00000017095) #13	P3h3 (ENSPEMG00000011450) #14	Gnb3 (ENSPEMG00000016368) #15	Cdca3 (ENSPEMG00000016358) #16	Usp5 (ENSPEMG00000015362) #17	Tpi1 (ENSPEMG00000015666) #18	Spsb2 (ENSPEMG00000002397) #19	Lrrc23 (ENSPEMG00000018958) #20	Eno2 (ENSPEMG00000016439) #21	Atn1 (ENSPEMG00000019091) #22	ENSPEMG00000019030 #23	Ptpn6 (ENSPEMG00000026571) #24	Phb2 (ENSPEMG00000018214) #25	ENSPEMG00000010244 #26	Lpcat3 (ENSPEMG00000008421) #27	ENSPEMG00000003953 #28	ENSPEMG00000016968 #29	C1rl (ENSPEMG00000024503) #30	Clstn3 (ENSPEMG00000012312) #31	Pex5 (ENSPEMG00000011167) #32	ENSPEMG00000013047 #33	Cd163 (ENSPEMG00000023074) #34	ENSPEMG00000021552 #35	Clec4e (ENSPEMG00000022603) #36	Clec4d (ENSPEMG00000021801) #37
Prairie vole	MODERN SPECIES	84	Pianp (ENSMOCG00000012046) #7	Cops7a (ENSMOCG00000018184) #8	ENSMOCG00000000196 #9	Ptms (ENSMOCG00000011411) #10	Lag3 (ENSMOCG00000016856) #11	Cd4 (ENSMOCG00000007576) #12	Gpr162 (ENSMOCG00000018395) #13	P3h3 (ENSMOCG00000014085) #14	Gnb3 (ENSMOCG00000019447) #15	Cdca3 (ENSMOCG00000008232) #16	Usp5 (ENSMOCG00000002382) #17	ENSMOCG00000020047 #18	Spsb2 (ENSMOCG00000018093) #19	Lrrc23 (ENSMOCG00000016717) #20	Eno2 (ENSMOCG00000016135) #21	Atn1 (ENSMOCG00000016557) #22	Grcc10 (ENSMOCG00000009351) ##23	Ptpn6 (ENSMOCG00000017778) #24	Phb2 (ENSMOCG00000013484) #25	Emg1 (ENSMOCG00000022570) #26	Lpcat3 (ENSMOCG00000021701) #27	ENSMOCG00000019687 #28	ENSMOCG00000020420 #29	C1rl (ENSMOCG00000011460) #30	Clstn3 (ENSMOCG00000014748) #31	ENSMOCG00000000391	Pex5 (ENSMOCG00000017492) #32	ENSMOCG00000002666 #33	Cd163 (ENSMOCG00000016909) #34	Clec4e (ENSMOCG00000000786) #36	Clec4d (ENSMOCG00000010391) #37
Cricetinae	ANCESTRAL SPECIES	8	ENSGT00510000049460 #7	ENSGT00940000159873 #8	ENSGT00390000005023.a #9	ENSGT01100000264105 #10	ENSGT01090000259985.b.b.b.a.a.a #11	ENSGT00390000001745 #12	ENSGT00390000017213.A #13	ENSGT00940000159164 #14	ENSGT01000000214413.b.a.b.a #15	ENSGT00390000017343 #16	ENSGT00940000156036 #17	ENSGT00390000013354.d.b #18	ENSGT01030000234629.A #19	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242.m ##23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000157473 #28	ENSGT00940000158621 #29	ENSGT00940000162495 #30	ENSGT00950000183086.a.b #31	ENSGT00940000156605 #32	ENSGT00560000078483 #33	ENSGT00940000155987.b #34	ENSGT00940000163606 #35	ENSGT00940000160666 #36	ENSGT00940000162400 #37
Chinese hamster chok1gshd	MODERN SPECIES	289	Pianp (ENSCGRG00001015100) #7	Cops7a (ENSCGRG00001014256) #8	Mlf2 (ENSCGRG00001010430) #9	Ptms (ENSCGRG00001001584) #10	Lag3 (ENSCGRG00001022458) #11	Cd4 (ENSCGRG00001013261) #12	Gpr162 (ENSCGRG00001003162) #13	P3h3 (ENSCGRG00001000528) #14	Gnb3 (ENSCGRG00001016439) #15	Cdca3 (ENSCGRG00001013882) #16	ENSCGRG00001003405 #17	ENSCGRG00001023512 #18	Spsb2 (ENSCGRG00001015446) #19	Lrrc23 (ENSCGRG00001014615) #20	Eno2 (ENSCGRG00001005536) #21	Atn1 (ENSCGRG00001002091) #22	Grcc10 (ENSCGRG00001000772) ##23	Ptpn6 (ENSCGRG00001000777) #24	Phb2 (ENSCGRG00001010980) #25	Emg1 (ENSCGRG00001018228) #26	Lpcat3 (ENSCGRG00001017783) #27	ENSCGRG00001018041 #28	ENSCGRG00001011539 #29	C1rl (ENSCGRG00001000458) #30	Clstn3 (ENSCGRG00001014128) #31	PEX5 (ENSCGRG00001020537) #32	ENSCGRG00001018106 #33	Cd163 (ENSCGRG00001013534) #34	ENSCGRG00001022487 #35	Clec4e (ENSCGRG00001020170) #36	Clec4d (ENSCGRG00001015907) #37
Golden Hamster	MODERN SPECIES	622	Pianp (ENSMAUG00000020708) #7	Cops7a (ENSMAUG00000014756) #8	Mlf2 (ENSMAUG00000021106) #9	Ptms (ENSMAUG00000014936) #10	Lag3 (ENSMAUG00000010793) #11	Cd4 (ENSMAUG00000008564) #12	Gpr162 (ENSMAUG00000015921) #13	P3h3 (ENSMAUG00000019245) #14	Gnb3 (ENSMAUG00000009606) #15	Cdca3 (ENSMAUG00000022142) #16	Usp5 (ENSMAUG00000012318) #17	ENSMAUG00000006567 #18	Spsb2 (ENSMAUG00000021689) #19	Lrrc23 (ENSMAUG00000016637) #20	Eno2 (ENSMAUG00000015278) #21	Atn1 (ENSMAUG00000021780) #22	ENSMAUG00000013193 #24	Grcc10 (ENSMAUG00000006718) ##23	Phb2 (ENSMAUG00000015418) #25	Emg1 (ENSMAUG00000011093) #26	Lpcat3 (ENSMAUG00000001241) #27	C1s (ENSMAUG00000017562) #28	ENSMAUG00000001230 #29	C1rl (ENSMAUG00000007953) #30	Clstn3 (ENSMAUG00000007828) #31	Pex5 (ENSMAUG00000012548) #32	ENSMAUG00000017972 #33	Cd163 (ENSMAUG00000000759) #34	Clec4e (ENSMAUG00000018571) #36	Clec4d (ENSMAUG00000004749) #37	Clec4n (ENSMAUG00000016308)
Murinae	ANCESTRAL SPECIES	4	ENSGT00510000049460 #7	ENSGT00940000159873 #8	ENSGT00390000005023.a #9	ENSGT01100000264105 #10	ENSGT01090000259985.b.b.b.a.a.a #11	ENSGT00390000001745 #12	ENSGT00390000017213.A #13	ENSGT00940000159164 #14	ENSGT01000000214413.b.a.b.a #15	ENSGT00390000017343 #16	ENSGT00940000156036 #17	ENSGT00390000013354.d.b #18	ENSGT01030000234629.A #19	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242 #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000157473 #28	ENSGT00940000158621 #29	ENSGT00940000162495 #30	ENSGT00950000183086.a.b #31	ENSGT00940000156605 #32	ENSGT00560000078483 #33	ENSGT00940000155987.b #34	ENSGT00940000160666 #36	ENSGT00940000162400 #37	ENSGT00940000162938
Mus	ANCESTRAL SPECIES	12	ENSGT00510000049460 #7	ENSGT00940000159873 #8	ENSGT00390000005023.a #9	ENSGT01100000264105 #10	ENSGT01090000259985.b.b.b.a.a.a #11	ENSGT00390000001745 #12	ENSGT00390000017213.A #13	ENSGT00940000159164 #14	ENSGT01000000214413.b.a.b.a #15	ENSGT00390000017343 #16	ENSGT00940000156036 #17	ENSGT00390000013354.d.b #18	ENSGT01030000234629.A #19	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242 #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000157473 #28	ENSGT00940000158621 #29	ENSGT00940000162495 #30	ENSGT00950000183086.a.b #31	ENSGT00940000156605 #32	ENSGT00560000078483 #33	ENSGT00940000155987.b #34	ENSGT00940000160666 #36	ENSGT00940000162400 #37	ENSGT00940000162938
Mus_A	ANCESTRAL SPECIES	7	ENSGT00510000049460 #7	ENSGT00940000159873 #8	ENSGT00390000005023.a #9	ENSGT01100000264105 #10	ENSGT01090000259985.b.b.b.a.a.a #11	ENSGT00390000001745 #12	ENSGT00390000017213.A #13	ENSGT00940000159164 #14	ENSGT01000000214413.b.a.b.a #15	ENSGT00390000017343 #16	ENSGT00940000156036 #17	ENSGT00390000013354.d.b #18	ENSGT01030000234629.A #19	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242 #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000157473 #28	ENSGT00940000158621 #29	ENSGT00940000162495 #30	ENSGT00950000183086.a.b #31	ENSGT00940000156605 #32	ENSGT00560000078483 #33	ENSGT00940000155987.b.v #34	ENSGT00940000160666 #36	ENSGT00940000162400 #37	ENSGT00940000162938
Mus_B	ANCESTRAL SPECIES	15	ENSGT00510000049460 #7	ENSGT00940000159873 #8	ENSGT00390000005023.a #9	ENSGT01100000264105 #10	ENSGT01090000259985.b.b.b.a.a.a #11	ENSGT00390000001745 #12	ENSGT00390000017213.A #13	ENSGT00940000159164 #14	ENSGT01000000214413.b.a.b.a #15	ENSGT00390000017343.g #16	ENSGT00940000156036 #17	ENSGT00390000013354.d.b #18	ENSGT01030000234629.A #19	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242 #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000157473.i #28	ENSGT00940000158621.k.b #29	ENSGT00940000157473.j #28	ENSGT00940000158621.k.a #29	ENSGT00940000162495 #30	ENSGT00950000183086.a.b #31	ENSGT00940000156605 #32	ENSGT00560000078483 #33	ENSGT00940000155987.b.v #34	ENSGT00940000163606.a.b.a.b #35
Mus_C	ANCESTRAL SPECIES	18	ENSGT00510000049460 #7	ENSGT00940000159873 #8	ENSGT00940000168330	ENSGT01100000264105 #10	ENSGT01090000259985.b.b.b.a.a.a #11	ENSGT00390000001745 #12	ENSGT00390000017213.A #13	ENSGT00940000159164 #14	ENSGT01000000214413.b.a.b.a #15	ENSGT00390000017343.g #16	ENSGT00940000156036 #17	ENSGT00390000013354.d.b #18	ENSGT01030000234629.A #19	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242 #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000158621.l #29	ENSGT00940000162495 #30	ENSGT00950000183086.a.b #31	ENSGT00940000156605 #32	ENSGT00560000078483 #33	ENSGT00940000155987.b.v #34	ENSGT00940000163606.a.b.a.b #35	ENSGT00940000163606.a.b.a.a.a #35	ENSGT00940000163606.a.a #35	ENSGT00940000163606.a.b.b.b #35
spretus	DUPLICATION
spretus	MODERN SPECIES	15	Pianp (MGP_SPRETEiJ_G0029906) #7	Cops7a (MGP_SPRETEiJ_G0029905) #8	MGP_SPRETEiJ_G0029904	MGP_SPRETEiJ_G0029903 #10	Lag3 (MGP_SPRETEiJ_G0029902) #11	Cd4 (MGP_SPRETEiJ_G0029901) #12	Gpr162 (MGP_SPRETEiJ_G0029900) #13	P3h3 (MGP_SPRETEiJ_G0029899) #14	Gnb3 (MGP_SPRETEiJ_G0029898) #15	Cdca3 (MGP_SPRETEiJ_G0029897) #16	Usp5 (MGP_SPRETEiJ_G0029896) #17	MGP_SPRETEiJ_G0029895 #18	Spsb2 (MGP_SPRETEiJ_G0029894) #19	Lrrc23 (MGP_SPRETEiJ_G0029893) #20	Eno2 (MGP_SPRETEiJ_G0029892) #21	MGP_SPRETEiJ_G0029891 #22	MGP_SPRETEiJ_G0029890 #22	Grcc10 (MGP_SPRETEiJ_G0029889) #23	Ptpn6 (MGP_SPRETEiJ_G0029888) #24	Phb2 (MGP_SPRETEiJ_G0029887) #25	Emg1 (MGP_SPRETEiJ_G0029886) #26	Lpcat3 (MGP_SPRETEiJ_G0029885) #27	MGP_SPRETEiJ_G0029883 #29	C1rl (MGP_SPRETEiJ_G0029882) #30	Clstn3 (MGP_SPRETEiJ_G0029881) #31	Pex5 (MGP_SPRETEiJ_G0029880) #32	MGP_SPRETEiJ_G0029879 #33	Cd163 (MGP_SPRETEiJ_G0029878) #34	MGP_SPRETEiJ_G0029877 #35	MGP_SPRETEiJ_G0029876 #35	MGP_SPRETEiJ_G0029875 #35
spretus	MODERN SPECIES	15	Cops7a (MGP_SPRETEiJ_G0029905) #8	MGP_SPRETEiJ_G0029904	MGP_SPRETEiJ_G0029903 #10	Lag3 (MGP_SPRETEiJ_G0029902) #11	Cd4 (MGP_SPRETEiJ_G0029901) #12	Gpr162 (MGP_SPRETEiJ_G0029900) #13	P3h3 (MGP_SPRETEiJ_G0029899) #14	Gnb3 (MGP_SPRETEiJ_G0029898) #15	Cdca3 (MGP_SPRETEiJ_G0029897) #16	Usp5 (MGP_SPRETEiJ_G0029896) #17	MGP_SPRETEiJ_G0029895 #18	Spsb2 (MGP_SPRETEiJ_G0029894) #19	Lrrc23 (MGP_SPRETEiJ_G0029893) #20	Eno2 (MGP_SPRETEiJ_G0029892) #21	MGP_SPRETEiJ_G0029891 #22	MGP_SPRETEiJ_G0029890 #22	Grcc10 (MGP_SPRETEiJ_G0029889) #23	Ptpn6 (MGP_SPRETEiJ_G0029888) #24	Phb2 (MGP_SPRETEiJ_G0029887) #25	Emg1 (MGP_SPRETEiJ_G0029886) #26	Lpcat3 (MGP_SPRETEiJ_G0029885) #27	MGP_SPRETEiJ_G0029883 #29	C1rl (MGP_SPRETEiJ_G0029882) #30	Clstn3 (MGP_SPRETEiJ_G0029881) #31	Pex5 (MGP_SPRETEiJ_G0029880) #32	MGP_SPRETEiJ_G0029879 #33	Cd163 (MGP_SPRETEiJ_G0029878) #34	MGP_SPRETEiJ_G0029877 #35	MGP_SPRETEiJ_G0029876 #35	MGP_SPRETEiJ_G0029875 #35	MGP_SPRETEiJ_G0029874 #35
Mouse	MODERN SPECIES	15	Pianp (ENSMUSG00000030329) #7	Cops7a (ENSMUSG00000030127) #8	Mlf2 (ENSMUSG00000030120) #9	Ptms (ENSMUSG00000030122) #10	Lag3 (ENSMUSG00000030124) #11	Cd4 (ENSMUSG00000023274) #12	Gpr162 (ENSMUSG00000038390) #13	P3h3 (ENSMUSG00000023191) #14	Gnb3 (ENSMUSG00000023439) #15	Cdca3 (ENSMUSG00000023505) #16	Usp5 (ENSMUSG00000038429) #17	Tpi1 (ENSMUSG00000023456) #18	Spsb2 (ENSMUSG00000038451) #19	Lrrc23 (ENSMUSG00000030125) #20	Eno2 (ENSMUSG00000004267) #21	Atn1 (ENSMUSG00000004263) #22	Grcc10 (ENSMUSG00000072772) #23	Ptpn6 (ENSMUSG00000004266) #24	Phb2 (ENSMUSG00000004264) #25	Emg1 (ENSMUSG00000004268) #26	Lpcat3 (ENSMUSG00000004270) #27	C1s2 (ENSMUSG00000079343) #28	C1rb (ENSMUSG00000098470) #29	C1s1 (ENSMUSG00000038521) #28	C1ra (ENSMUSG00000055172) #29	C1rl (ENSMUSG00000038527) #30	Clstn3 (ENSMUSG00000008153) #31	Pex5 (ENSMUSG00000005069) #32	Cd163 (ENSMUSG00000008845) #34	Vmn2r27 (ENSMUSG00000072778) #35	Vmn2r26 (ENSMUSG00000096630) #35
Ryukyu mouse	DUPLICATION
Ryukyu mouse	MODERN SPECIES	15	Pianp (MGP_CAROLIEiJ_G0028864) #7	Cops7a (MGP_CAROLIEiJ_G0028863) #8	MGP_CAROLIEiJ_G0028862	MGP_CAROLIEiJ_G0028861 #10	MGP_CAROLIEiJ_G0028860 #11	Cd4 (MGP_CAROLIEiJ_G0028859) #12	Gpr162 (MGP_CAROLIEiJ_G0028858) #13	Gnb3 (MGP_CAROLIEiJ_G0028856) #15	Cdca3 (MGP_CAROLIEiJ_G0028855) #16	Usp5 (MGP_CAROLIEiJ_G0028854) #17	Tpi1 (MGP_CAROLIEiJ_G0028853) #18	Spsb2 (MGP_CAROLIEiJ_G0028852) #19	Lrrc23 (MGP_CAROLIEiJ_G0028851) #20	Eno2 (MGP_CAROLIEiJ_G0028850) #21	MGP_CAROLIEiJ_G0028849 #22	MGP_CAROLIEiJ_G0028848 #22	Grcc10 (MGP_CAROLIEiJ_G0028847) #23	MGP_CAROLIEiJ_G0028846	Phb2 (MGP_CAROLIEiJ_G0028845) #25	Emg1 (MGP_CAROLIEiJ_G0028844) #26	Lpcat3 (MGP_CAROLIEiJ_G0028843) #27	MGP_CAROLIEiJ_G0028842 #31	MGP_CAROLIEiJ_G0028840 #33	Cd163 (MGP_CAROLIEiJ_G0028839) #34	MGP_CAROLIEiJ_G0028838 #36	Clec4d (MGP_CAROLIEiJ_G0028837) #37	MGP_CAROLIEiJ_G0028836	MGP_CAROLIEiJ_G0028835	MGP_CAROLIEiJ_G0028834	Clec4a2 (MGP_CAROLIEiJ_G0028833)	Clec4a4 (MGP_CAROLIEiJ_G0028832)
Ryukyu mouse	MODERN SPECIES	15	Zfp384 (MGP_CAROLIEiJ_G0028865)	Pianp (MGP_CAROLIEiJ_G0028864) #7	Cops7a (MGP_CAROLIEiJ_G0028863) #8	MGP_CAROLIEiJ_G0028862	MGP_CAROLIEiJ_G0028861 #10	MGP_CAROLIEiJ_G0028860 #11	Cd4 (MGP_CAROLIEiJ_G0028859) #12	Gpr162 (MGP_CAROLIEiJ_G0028858) #13	Gnb3 (MGP_CAROLIEiJ_G0028856) #15	Cdca3 (MGP_CAROLIEiJ_G0028855) #16	Usp5 (MGP_CAROLIEiJ_G0028854) #17	Tpi1 (MGP_CAROLIEiJ_G0028853) #18	Spsb2 (MGP_CAROLIEiJ_G0028852) #19	Lrrc23 (MGP_CAROLIEiJ_G0028851) #20	Eno2 (MGP_CAROLIEiJ_G0028850) #21	MGP_CAROLIEiJ_G0028849 #22	MGP_CAROLIEiJ_G0028848 #22	Grcc10 (MGP_CAROLIEiJ_G0028847) #23	MGP_CAROLIEiJ_G0028846	Phb2 (MGP_CAROLIEiJ_G0028845) #25	Emg1 (MGP_CAROLIEiJ_G0028844) #26	Lpcat3 (MGP_CAROLIEiJ_G0028843) #27	MGP_CAROLIEiJ_G0028842 #31	MGP_CAROLIEiJ_G0028840 #33	Cd163 (MGP_CAROLIEiJ_G0028839) #34	MGP_CAROLIEiJ_G0028838 #36	Clec4d (MGP_CAROLIEiJ_G0028837) #37	MGP_CAROLIEiJ_G0028836	MGP_CAROLIEiJ_G0028835	MGP_CAROLIEiJ_G0028834	Clec4a2 (MGP_CAROLIEiJ_G0028833)
Shrew mouse	MODERN SPECIES	11	Pianp (MGP_PahariEiJ_G0022624) #7	Cops7a (MGP_PahariEiJ_G0022623) #8	MGP_PahariEiJ_G0022622	MGP_PahariEiJ_G0022621 #10	Lag3 (MGP_PahariEiJ_G0022620) #11	MGP_PahariEiJ_G0022619 #12	Gpr162 (MGP_PahariEiJ_G0022618) #13	P3h3 (MGP_PahariEiJ_G0022617) #14	Gnb3 (MGP_PahariEiJ_G0022616) #15	Cdca3 (MGP_PahariEiJ_G0022615) #16	Usp5 (MGP_PahariEiJ_G0022614) #17	Tpi1 (MGP_PahariEiJ_G0022613) #18	Spsb2 (MGP_PahariEiJ_G0022612) #19	Lrrc23 (MGP_PahariEiJ_G0022611) #20	Eno2 (MGP_PahariEiJ_G0022610) #21	Atn1 (MGP_PahariEiJ_G0022609) #22	Grcc10 (MGP_PahariEiJ_G0022608) #23	Ptpn6 (MGP_PahariEiJ_G0022607) #24	Phb2 (MGP_PahariEiJ_G0022606) #25	Emg1 (MGP_PahariEiJ_G0022605) #26	Lpcat3 (MGP_PahariEiJ_G0022604) #27	MGP_PahariEiJ_G0022603 #29	MGP_PahariEiJ_G0022602 #29	C1rl (MGP_PahariEiJ_G0022601) #30	Clstn3 (MGP_PahariEiJ_G0022600) #31	Pex5 (MGP_PahariEiJ_G0022599) #32	MGP_PahariEiJ_G0022598 #33	Cd163 (MGP_PahariEiJ_G0022597) #34	MGP_PahariEiJ_G0022596 #35	MGP_PahariEiJ_G0022595 #35	MGP_PahariEiJ_G0022594 #35
Rat	MODERN SPECIES	14	Cops7a (ENSRNOG00000016778) #8	Mlf2 (ENSRNOG00000016589) #9	AC115420.4 (ENSRNOG00000060308)	Ptms (ENSRNOG00000060098) #10	Lag3 (ENSRNOG00000021334) #11	ENSRNOG00000071219 #12	Gpr162 (ENSRNOG00000016143) #13	P3h3 (ENSRNOG00000071218) #14	Gnb3 (ENSRNOG00000015541) #15	Cdca3 (ENSRNOG00000015529) #16	Usp5 (ENSRNOG00000015409) #17	Tpi1 (ENSRNOG00000015290) #18	Spsb2 (ENSRNOG00000015125) #19	Lrrc23 (ENSRNOG00000026309) #20	Eno2 (ENSRNOG00000013141) #21	Atn1 (ENSRNOG00000060594) #22	Ptpn6 (ENSRNOG00000014294) #24	Phb2 (ENSRNOG00000012999) #25	Emg1 (ENSRNOG00000012828) #26	Lpcat3 (ENSRNOG00000012269) #27	C1s (ENSRNOG00000011971) #28	C1r (ENSRNOG00000011796) #29	C1rl (ENSRNOG00000011718) #30	Zfp42l (ENSRNOG00000063726)	Clstn3 (ENSRNOG00000011156) #31	Pex5 (ENSRNOG00000049203) #32	RGD1307916 (ENSRNOG00000042494) #33	Cd163 (ENSRNOG00000010253) #34	Vom2r52 (ENSRNOG00000068988) #35	Vom2r51 (ENSRNOG00000066511) #35	Vom2r50 (ENSRNOG00000070578) #35
Upper Galilee mountains blind mole rat	MODERN SPECIES	1885	Cops7a (ENSNGAG00000022873) #8	Mlf2 (ENSNGAG00000016666) #9	ENSNGAG00000021065	Lag3 (ENSNGAG00000009790) #11	ENSNGAG00000022963 #12	Gpr162 (ENSNGAG00000002840) #13	P3h3 (ENSNGAG00000015076) #14	Gnb3 (ENSNGAG00000023501) #15	Cdca3 (ENSNGAG00000016633) #16	Usp5 (ENSNGAG00000011453) #17	Tpi1 (ENSNGAG00000017109) #18	Spsb2 (ENSNGAG00000008201) #19	ENSNGAG00000019265	Lrrc23 (ENSNGAG00000023434) #20	Eno2 (ENSNGAG00000019726) #21	Atn1 (ENSNGAG00000003346) #22	Grcc10 (ENSNGAG00000015624) #23	Ptpn6 (ENSNGAG00000006668) #24	ENSNGAG00000023489 #25	Emg1 (ENSNGAG00000022592) #26	Lpcat3 (ENSNGAG00000019456) #27	ENSNGAG00000019975 #28	ENSNGAG00000021958 #29	C1rl (ENSNGAG00000023384) #30	ENSNGAG00000018451	Clstn3 (ENSNGAG00000022664) #31	Pex5 (ENSNGAG00000022852) #32	ENSNGAG00000023425	ENSNGAG00000023205 #33	Cd163 (ENSNGAG00000004434) #34	Clec4e (ENSNGAG00000010318) #36
Lesser Egyptian jerboa	MODERN SPECIES	158	Pianp (ENSJJAG00000000549) #7	Cops7a (ENSJJAG00000010387) #8	Mlf2 (ENSJJAG00000009196) #9	ENSJJAG00000008935	Lag3 (ENSJJAG00000007735) #11	Cd4 (ENSJJAG00000006130) #12	Gpr162 (ENSJJAG00000004130) #13	P3h3 (ENSJJAG00000002354) #14	Gnb3 (ENSJJAG00000000612) #15	Cdca3 (ENSJJAG00000000372) #16	Usp5 (ENSJJAG00000022609) #17	Tpi1 (ENSJJAG00000022451) #18	Spsb2 (ENSJJAG00000022156) #19	Lrrc23 (ENSJJAG00000021825) #20	Eno2 (ENSJJAG00000021287) #21	Atn1 (ENSJJAG00000019576) #22	Grcc10 (ENSJJAG00000018958) #23	ENSJJAG00000018809 #24	ENSJJAG00000018699 #25	Emg1 (ENSJJAG00000018448) #26	Lpcat3 (ENSJJAG00000018031) #27	ENSJJAG00000016716 #28	ENSJJAG00000015111 #29	ENSJJAG00000014098 #30	ENSJJAG00000013518	Clstn3 (ENSJJAG00000013207) #31	ENSJJAG00000010801 #32	Cd163 (ENSJJAG00000008702) #34	Clec4e (ENSJJAG00000001281) #36	Clec4d (ENSJJAG00000000318) #37	ENSJJAG00000000075
Rodentia_A	ANCESTRAL SPECIES	4	ENSGT00510000049460 #7	ENSGT00940000159873 #8	ENSGT00390000005023.a #9	ENSGT01030000234816	ENSGT01090000259985.b.b.b.a.a.a #11	ENSGT00390000001745 #12	ENSGT00390000017213.A #13	ENSGT00940000159164 #14	ENSGT01000000214413.b.a.b.a #15	ENSGT00390000017343 #16	ENSGT00940000156036 #17	ENSGT00390000013354.d.b #18	ENSGT01030000234629.A #19	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242 #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000157473 #28	ENSGT00940000158621 #29	ENSGT00940000162495 #30	ENSGT00940000162526	ENSGT00950000183086.a.b #31	ENSGT00940000156605 #32	ENSGT00940000157963	ENSGT00560000078483 #33	ENSGT00940000155987.b #34	ENSGT00940000163606 #35
Hystricomorpha	ANCESTRAL SPECIES	13	ENSGT00510000049460 #7	ENSGT00940000159873 #8	ENSGT00390000005023.a #9	ENSGT01030000234816	ENSGT01090000259985.b.b.b.a.a.a #11	ENSGT00390000001745 #12	ENSGT00390000017213.A #13	ENSGT00940000159164 #14	ENSGT01000000214413.b.a.b.a #15	ENSGT00390000017343 #16	ENSGT00940000156036 #17	ENSGT00390000013354.d.b #18	ENSGT01030000234629.A #19	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242 #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000157473 #28	ENSGT00940000158621 #29	ENSGT00940000162495 #30	ENSGT00940000162526	ENSGT00950000183086.a.b #31	ENSGT00940000156605 #32	ENSGT00940000157963	ENSGT00940000155987.b #34	ENSGT00940000163606 #35	ENSGT00940000160666 #36
Hystricomorpha_a	ANCESTRAL SPECIES	6	ENSGT00510000049460 #7	ENSGT00940000159873 #8	ENSGT00390000005023.a #9	ENSGT01030000234816	ENSGT01090000259985.b.b.b.a.a.a #11	ENSGT00390000001745 #12	ENSGT00390000017213.A #13	ENSGT00940000159164 #14	ENSGT01000000214413.b.a.b.a #15	ENSGT00390000017343 #16	ENSGT00940000156036 #17	ENSGT00390000013354.d.b #18	ENSGT01030000234629.A #19	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242 #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000157473 #28	ENSGT00940000158621 #29	ENSGT00940000162495 #30	ENSGT00940000162526	ENSGT00950000183086.a.b #31	ENSGT00940000156605 #32	ENSGT00940000155987.b #34	ENSGT00940000163606 #35	ENSGT00940000160666 #36	ENSGT00940000162400 #37
Hystricomorpha_b	ANCESTRAL SPECIES	2	ENSGT00510000049460 #7	ENSGT00940000159873 #8	ENSGT00390000005023.a #9	ENSGT01030000234816	ENSGT01090000259985.b.b.b.a.a.a #11	ENSGT00390000001745 #12	ENSGT00390000017213.A #13	ENSGT00940000159164 #14	ENSGT01000000214413.b.a.b.a #15	ENSGT00390000017343 #16	ENSGT00940000156036 #17	ENSGT00390000013354.d.b #18	ENSGT01030000234629.A #19	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242 #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000157473 #28	ENSGT00940000158621 #29	ENSGT00940000162495 #30	ENSGT00940000162526	ENSGT00950000183086.a.b #31	ENSGT00940000156605 #32	ENSGT00940000155987.b #34	ENSGT00940000163606 #35	ENSGT00940000160666 #36	ENSGT00940000162400 #37
Long-tailed chinchilla	MODERN SPECIES	120	PIANP (ENSCLAG00000016394) #7	COPS7A (ENSCLAG00000014244) #8	MLF2 (ENSCLAG00000013739) #9	PTMS (ENSCLAG00000016337)	LAG3 (ENSCLAG00000014680) #11	CD4 (ENSCLAG00000016197) #12	GPR162 (ENSCLAG00000015020) #13	P3H3 (ENSCLAG00000012569) #14	GNB3 (ENSCLAG00000014669) #15	CDCA3 (ENSCLAG00000013619) #16	USP5 (ENSCLAG00000015551) #17	TPI1 (ENSCLAG00000016645) #18	SPSB2 (ENSCLAG00000014822) #19	LRRC23 (ENSCLAG00000016347) #20	ENO2 (ENSCLAG00000015698) #21	ATN1 (ENSCLAG00000016679) #22	C12orf57 (ENSCLAG00000015538) #23	PTPN6 (ENSCLAG00000013644) #24	PHB2 (ENSCLAG00000015902) #25	EMG1 (ENSCLAG00000015067) #26	LPCAT3 (ENSCLAG00000015685) #27	C1S (ENSCLAG00000015517) #28	C1R (ENSCLAG00000015939) #29	C1RL (ENSCLAG00000017098) #30	RBP5 (ENSCLAG00000015079)	CLSTN3 (ENSCLAG00000013125) #31	PEX5 (ENSCLAG00000014902) #32	CD163 (ENSCLAG00000016131) #34	ENSCLAG00000014034 #35	CLEC4E (ENSCLAG00000014802) #36	CLEC4D (ENSCLAG00000015345) #37
Degu	MODERN SPECIES	219	COPS7A (ENSODEG00000002432) #8	MLF2 (ENSODEG00000002383) #9	ENSODEG00000002310	LAG3 (ENSODEG00000002278) #11	ENSODEG00000002251	ENSODEG00000018791	GPR162 (ENSODEG00000003518) #13	P3H3 (ENSODEG00000003441) #14	GNB3 (ENSODEG00000003424) #15	CDCA3 (ENSODEG00000003383) #16	USP5 (ENSODEG00000002978) #17	ENSODEG00000002846 #18	SPSB2 (ENSODEG00000002806) #19	LRRC23 (ENSODEG00000002781) #20	ENO2 (ENSODEG00000002668) #21	ATN1 (ENSODEG00000003478) #22	C12orf57 (ENSODEG00000003444) #23	PTPN6 (ENSODEG00000003352) #24	ENSODEG00000003109 #25	EMG1 (ENSODEG00000004059) #26	LPCAT3 (ENSODEG00000004029) #27	C1S (ENSODEG00000003726) #28	ENSODEG00000003709 #29	C1RL (ENSODEG00000003650) #30	RBP5 (ENSODEG00000003636)	CLSTN3 (ENSODEG00000002598) #31	PEX5 (ENSODEG00000002469) #32	ENSODEG00000002405	ENSODEG00000018806
Naked mole-rat female	MODERN SPECIES	24	PIANP (ENSHGLG00000003689) #7	COPS7A (ENSHGLG00000032684) #8	MLF2 (ENSHGLG00000003883) #9	PTMS (ENSHGLG00000038669)	LAG3 (ENSHGLG00000004095) #11	CD4 (ENSHGLG00000004194) #12	GPR162 (ENSHGLG00000004580) #13	P3H3 (ENSHGLG00000004948) #14	GNB3 (ENSHGLG00000005327) #15	CDCA3 (ENSHGLG00000005685) #16	USP5 (ENSHGLG00000006008) #17	TPI1 (ENSHGLG00000047042) #18	SPSB2 (ENSHGLG00000000850) #19	LRRC23 (ENSHGLG00000000873) #20	ENO2 (ENSHGLG00000040320) #21	ATN1 (ENSHGLG00000000959) #22	C12orf57 (ENSHGLG00000000977) #23	PTPN6 (ENSHGLG00000001036) #24	PHB2 (ENSHGLG00000001214) #25	EMG1 (ENSHGLG00000001300) #26	LPCAT3 (ENSHGLG00000001329) #27	C1S (ENSHGLG00000038360) #28	C1R (ENSHGLG00000001453) #29	C1RL (ENSHGLG00000042250) #30	ENSHGLG00000001579	CLSTN3 (ENSHGLG00000001611) #31	ENSHGLG00000035824	ENSHGLG00000001679 #32	ENSHGLG00000037231	ENSHGLG00000001870 #36	CLEC4D (ENSHGLG00000047579) #37
Sciuridae	ANCESTRAL SPECIES	15	ENSGT00510000049460 #7	ENSGT00940000159873 #8	ENSGT00390000005023.a #9	ENSGT01030000234816	ENSGT01090000259985.b.b.b.a.a.a #11	ENSGT00390000001745 #12	ENSGT00390000017213.A #13	ENSGT00940000159164 #14	ENSGT01000000214413.b.a.b.a #15	ENSGT00390000017343 #16	ENSGT00940000156036 #17	ENSGT00390000013354.d.b #18	ENSGT01030000234629.A #19	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242 #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000157473 #28	ENSGT00940000158621 #29	ENSGT00940000162495 #30	ENSGT00940000162526	ENSGT00950000183086.a.b #31	ENSGT00940000156605 #32	ENSGT00940000157963.e.a.b	ENSGT00560000078483 #33	ENSGT00940000155987.b #34	ENSGT00940000163606 #35
Marmotini	ANCESTRAL SPECIES	43	ENSGT00510000049460 #7	ENSGT00940000159873 #8	ENSGT00390000005023.a #9	ENSGT01030000234816	ENSGT01090000259985.b.b.b.a.a.a #11	ENSGT00390000001745 #12	ENSGT00390000017213.A #13	ENSGT00940000159164 #14	ENSGT01000000214413.b.a.b.a #15	ENSGT00390000017343 #16	ENSGT00940000156036 #17	ENSGT00390000013354.d.b #18	ENSGT01030000234629.A #19	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242 #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000157473 #28	ENSGT00940000158621 #29	ENSGT00940000162495 #30	ENSGT00940000162526	ENSGT00950000183086.a.b #31	ENSGT00940000156605 #32	ENSGT00940000162741.j	ENSGT00940000157963.e.b	ENSGT00940000157963.e.a.a	ENSGT00940000157963.e.a.b.a.b.b
Alpin marmot	MODERN SPECIES	69	PIANP (ENSMMMG00000017119) #7	COPS7A (ENSMMMG00000017113) #8	MLF2 (ENSMMMG00000017103) #9	ENSMMMG00000017097	LAG3 (ENSMMMG00000017001) #11	CD4 (ENSMMMG00000016990) #12	GPR162 (ENSMMMG00000016980) #13	P3H3 (ENSMMMG00000016960) #14	GNB3 (ENSMMMG00000016949) #15	CDCA3 (ENSMMMG00000016946) #16	USP5 (ENSMMMG00000016921) #17	TPI1 (ENSMMMG00000016904) #18	SPSB2 (ENSMMMG00000016902) #19	LRRC23 (ENSMMMG00000016890) #20	ENO2 (ENSMMMG00000016836) #21	ATN1 (ENSMMMG00000016825) #22	C12orf57 (ENSMMMG00000016822) #23	PTPN6 (ENSMMMG00000016690) #24	PHB2 (ENSMMMG00000016672) #25	EMG1 (ENSMMMG00000016665) #26	LPCAT3 (ENSMMMG00000016656) #27	C1S (ENSMMMG00000016640) #28	C1R (ENSMMMG00000016634) #29	C1RL (ENSMMMG00000016631) #30	RBP5 (ENSMMMG00000016625)	CLSTN3 (ENSMMMG00000016592) #31	PEX5 (ENSMMMG00000016410) #32	ENSMMMG00000016404	ENSMMMG00000016218	ENSMMMG00000016202	ENSMMMG00000012230
Marmotini_b	ANCESTRAL SPECIES	111	ENSGT00510000049460 #7	ENSGT00940000159873 #8	ENSGT00390000005023.a #9	ENSGT01030000234816	ENSGT01090000259985.b.b.b.a.a.a #11	ENSGT00390000001745 #12	ENSGT00390000017213.A #13	ENSGT00940000159164 #14	ENSGT01000000214413.b.a.b.a #15	ENSGT00390000017343 #16	ENSGT00940000156036 #17	ENSGT00390000013354.d.b #18	ENSGT01030000234629.A #19	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242 #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000157473 #28	ENSGT00940000158621 #29	ENSGT00940000162495 #30	ENSGT00940000162526	ENSGT00950000183086.a.b #31	ENSGT00940000156605 #32	ENSGT00940000162741.j	ENSGT00940000157963.e.b	ENSGT00940000157963.e.a.a
Squirrel	MODERN SPECIES	309	PIANP (ENSSTOG00000028660) #7	COPS7A (ENSSTOG00000027250) #8	ENSSTOG00000009908 #9	PTMS (ENSSTOG00000034819)	LAG3 (ENSSTOG00000015581) #11	CD4 (ENSSTOG00000027178) #12	GPR162 (ENSSTOG00000020091) #13	P3H3 (ENSSTOG00000015582) #14	GNB3 (ENSSTOG00000015586) #15	CDCA3 (ENSSTOG00000023573) #16	USP5 (ENSSTOG00000015589) #17	SPSB2 (ENSSTOG00000026457) #19	TPI1 (ENSSTOG00000021940) #18	LRRC23 (ENSSTOG00000004121) #20	ENO2 (ENSSTOG00000012290) #21	ATN1 (ENSSTOG00000024332) #22	C12orf57 (ENSSTOG00000024055) #23	PTPN6 (ENSSTOG00000000383) #24	PHB2 (ENSSTOG00000027814) #25	EMG1 (ENSSTOG00000000387) #26	LPCAT3 (ENSSTOG00000000390) #27	ENSSTOG00000032593	C1S (ENSSTOG00000015162) #28	C1R (ENSSTOG00000002585) #29	RBP5 (ENSSTOG00000002611)	CLSTN3 (ENSSTOG00000002622) #31	PEX5 (ENSSTOG00000002648) #32	ENSSTOG00000024410	ENSSTOG00000034235	ENSSTOG00000028404
Arctic ground squirrel	MODERN SPECIES	287	COPS7A (ENSUPAG00010012353) #8	ENSUPAG00010012348	MLF2 (ENSUPAG00010012341) #9	ENSUPAG00010012331	LAG3 (ENSUPAG00010012322) #11	CD4 (ENSUPAG00010012311) #12	GPR162 (ENSUPAG00010012307) #13	P3H3 (ENSUPAG00010012273) #14	GNB3 (ENSUPAG00010012262) #15	CDCA3 (ENSUPAG00010012251) #16	USP5 (ENSUPAG00010012212) #17	TPI1 (ENSUPAG00010012206) #18	SPSB2 (ENSUPAG00010012200) #19	LRRC23 (ENSUPAG00010012187) #20	ENO2 (ENSUPAG00010012149) #21	ATN1 (ENSUPAG00010012129) #22	C12orf57 (ENSUPAG00010012116) #23	PTPN6 (ENSUPAG00010011946) #24	PHB2 (ENSUPAG00010011907) #25	EMG1 (ENSUPAG00010011895) #26	LPCAT3 (ENSUPAG00010011881) #27	ENSUPAG00010011873	C1S (ENSUPAG00010011857) #28	C1R (ENSUPAG00010011846) #29	C1RL (ENSUPAG00010011772) #30	RBP5 (ENSUPAG00010011765)	CLSTN3 (ENSUPAG00010011730) #31	PEX5 (ENSUPAG00010011683) #32	ENSUPAG00010011679	ENSUPAG00010011164	ENSUPAG00010009458
Eurasian red squirrel	MODERN SPECIES	14	PIANP (ENSSVLG00005018592) #7	ENSSVLG00005018640 #8	MLF2 (ENSSVLG00005018671) #9	ENSSVLG00005018711	LAG3 (ENSSVLG00005018831) #11	CD4 (ENSSVLG00005018976) #12	GPR162 (ENSSVLG00005019129) #13	P3H3 (ENSSVLG00005019312) #14	GNB3 (ENSSVLG00005019432) #15	ENSSVLG00005019585 #16	USP5 (ENSSVLG00005019715) #17	TPI1 (ENSSVLG00005019785) #18	SPSB2 (ENSSVLG00005019907) #19	LRRC23 (ENSSVLG00005020001) #20	ENO2 (ENSSVLG00005020249) #21	ATN1 (ENSSVLG00005020350) #22	C12orf57 (ENSSVLG00005020402) #23	PTPN6 (ENSSVLG00005000251) #24	ENSSVLG00005000414 #25	EMG1 (ENSSVLG00005000499) #26	LPCAT3 (ENSSVLG00005000522) #27	C1S (ENSSVLG00005000584) #28	C1R (ENSSVLG00005000643) #29	ENSSVLG00005000676	RBP5 (ENSSVLG00005000704)	CLSTN3 (ENSSVLG00005000748) #31	PEX5 (ENSSVLG00005000805) #32	ENSSVLG00005000856	ENSSVLG00005000869	ENSSVLG00005000884	ENSSVLG00005000919
Lagomorpha	ANCESTRAL SPECIES	37	ENSGT00510000049460 #7	ENSGT00940000159873 #8	ENSGT00390000005023.a #9	ENSGT01030000234816	ENSGT01090000259985.b.b.b.a.a.a #11	ENSGT00390000001745 #12	ENSGT00390000017213.A #13	ENSGT00940000159164 #14	ENSGT01000000214413.b.a.b.a #15	ENSGT00390000017343 #16	ENSGT00940000156036 #17	ENSGT00390000013354.d.b #18	ENSGT01030000234629.A #19	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242 #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000157473 #28	ENSGT00940000158621 #29	ENSGT00940000162526	ENSGT00950000183086.a.b #31	ENSGT00940000156605 #32	ENSGT00940000155987.b #34	ENSGT00940000160666 #36	ENSGT00940000162400 #37	ENSGT00940000158835	ENSGT00390000009359.a
Rabbit	MODERN SPECIES	19	ZNF384 (ENSOCUG00000003747)	PIANP (ENSOCUG00000003749) #7	COPS7A (ENSOCUG00000011187) #8	ENSOCUG00000003750 #9	LAG3 (ENSOCUG00000011196) #11	ENSOCUG00000012911 #12	GPR162 (ENSOCUG00000030705) #13	P3H3 (ENSOCUG00000012916) #14	GNB3 (ENSOCUG00000012934) #15	CDCA3 (ENSOCUG00000022434) #16	USP5 (ENSOCUG00000003582) #17	TPI1 (ENSOCUG00000025649) #18	SPSB2 (ENSOCUG00000026363) #19	LRRC23 (ENSOCUG00000026502) #20	ENO2 (ENSOCUG00000003589) #21	ATN1 (ENSOCUG00000003592) #22	C12orf57 (ENSOCUG00000013275) #23	PTPN6 (ENSOCUG00000003599) #24	PHB2 (ENSOCUG00000026538) #25	EMG1 (ENSOCUG00000003603) #26	LPCAT3 (ENSOCUG00000014461) #27	C1S (ENSOCUG00000014468) #28	C1R (ENSOCUG00000014480) #29	RBP5 (ENSOCUG00000023679)	CLSTN3 (ENSOCUG00000014499) #31	PEX5 (ENSOCUG00000005856) #32	ENSOCUG00000039239	ENSOCUG00000027440	CD163 (ENSOCUG00000003958) #34	ENSOCUG00000022788	CLEC4E (ENSOCUG00000009195) #36
Pika	MODERN SPECIES	233	ACRBP (ENSOPRG00000003592)	ZNF384 (ENSOPRG00000003626)	COPS7A (ENSOPRG00000003640) #8	MLF2 (ENSOPRG00000003657) #9	PTMS (ENSOPRG00000003690)	LAG3 (ENSOPRG00000003706) #11	CD4 (ENSOPRG00000003747) #12	P3H3 (ENSOPRG00000003768) #14	GNB3 (ENSOPRG00000003814) #15	CDCA3 (ENSOPRG00000003837) #16	USP5 (ENSOPRG00000003849) #17	TPI1 (ENSOPRG00000003895) #18	SPSB2 (ENSOPRG00000003916) #19	LRRC23 (ENSOPRG00000003927) #20	ENO2 (ENSOPRG00000003940) #21	ATN1 (ENSOPRG00000003965) #22	C12orf57 (ENSOPRG00000004013) #23	PTPN6 (ENSOPRG00000004028) #24	PHB2 (ENSOPRG00000019151) #25	EMG1 (ENSOPRG00000004071) #26	C1S (ENSOPRG00000004093) #28
Tree shrew	MODERN SPECIES	402																ENSTBEG00000015017 #22	EMG1 (ENSTBEG00000015406) #26	LPCAT3 (ENSTBEG00000015525) #27