Chordata	ANCESTRAL SPECIES																	ENSGT00940000153615.a.b #22
Vertebrata	ANCESTRAL SPECIES																	ENSGT00940000153615.a.b #22
Gnathostomata	ANCESTRAL SPECIES																	ENSGT00940000153615.a.b #22
Euteleostomi	ANCESTRAL SPECIES																	ENSGT00940000153615.a.b #22
Sarcopterygii	ANCESTRAL SPECIES	541																ENSGT00940000153615.a.b #22	ENSGT00940000159480 #24	ENSGT00950000183070.a.a #25	ENSGT01030000234564.b #27	ENSGT00940000157473 #30	ENSGT00940000158621 #29
Tetrapoda	ANCESTRAL SPECIES	107	ENSGT00940000159033	ENSGT00940000156904 #7	ENSGT00510000049460 #8	ENSGT00390000005023.a #10	ENSGT00940000168928	ENSGT00390000017213.A #14	ENSGT00940000159164 #15	ENSGT01000000214413.b.a.b.a #16	ENSGT00390000017343 #17	ENSGT00940000168539	ENSGT00940000156036 #18	ENSGT00390000013354 #19	ENSGT01030000234629.A	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242 #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a #25	ENSGT00390000000305 #26
Amniota	ANCESTRAL SPECIES	53	ENSGT00940000159033	ENSGT00940000156904 #7	ENSGT00510000049460 #8	ENSGT00940000159873 #9	ENSGT00390000005023.a #10	ENSGT01090000259985.b.b.b.a.a.a #12	ENSGT00390000001745 #13	ENSGT00390000017213.A #14	ENSGT00940000159164 #15	ENSGT01000000214413.b.a.b.a #16	ENSGT00390000017343 #17	ENSGT00940000156036 #18	ENSGT00390000013354.d #19	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242 #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000157473 #30	ENSGT00940000158621 #29	ENSGT00940000162526 #32	ENSGT00950000183086.a.b #33	ENSGT00940000156605 #34	ENSGT00940000160666	ENSGT00940000162867	ENSGT00390000009359.a	ENSGT01100000263564.b	ENSGT00940000161053
Mammalia	ANCESTRAL SPECIES	20	ENSGT00940000156904 #7	ENSGT00510000049460 #8	ENSGT00940000159873 #9	ENSGT00390000005023.a #10	ENSGT01090000259985.b.b.b.a.a.a #12	ENSGT00390000001745 #13	ENSGT00390000017213.A #14	ENSGT00940000159164 #15	ENSGT01000000214413.b.a.b.a #16	ENSGT00390000017343 #17	ENSGT00940000156036 #18	ENSGT00390000013354.d #19	ENSGT01030000234629.A	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242 #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000157473 #30	ENSGT00940000158621 #29	ENSGT00940000162526 #32	ENSGT00950000183086.a.b #33	ENSGT00940000156605 #34	ENSGT00940000155955.C	ENSGT00530000063509.A	ENSGT00530000063707.a	ENSGT00940000155964	ENSGT00950000182696.A.a
Theria	ANCESTRAL SPECIES		ENSGT00940000156904 #7	ENSGT00510000049460 #8	ENSGT00940000159873 #9	ENSGT00390000005023.a #10	ENSGT01090000259985.b.b.b.a.a.a #12	ENSGT00390000001745 #13	ENSGT00390000017213.A #14	ENSGT00940000159164 #15	ENSGT01000000214413.b.a.b.a #16	ENSGT00390000017343 #17	ENSGT00940000156036 #18	ENSGT00390000013354.d #19	ENSGT01030000234629.A	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242 #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000157473 #30	ENSGT00940000158621 #29	ENSGT00940000162495 #31	ENSGT00940000162526 #32	ENSGT00950000183086.a.b #33	ENSGT00940000156605 #34	ENSGT00940000155955.C	ENSGT00530000063509.A	ENSGT00530000063707.a	ENSGT00940000155964
Eutheria	ANCESTRAL SPECIES	1	ENSGT00510000049460 #8	ENSGT00940000159873 #9	ENSGT00390000005023.a #10	ENSGT01030000234816	ENSGT01090000259985.b.b.b.a.a.a #12	ENSGT00390000001745 #13	ENSGT00390000017213.A #14	ENSGT00940000159164 #15	ENSGT01000000214413.b.a.b.a #16	ENSGT00390000017343 #17	ENSGT00940000156036 #18	ENSGT00390000013354.d #19	ENSGT01030000234629.A	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242 #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000157473 #30	ENSGT00940000158621 #29	ENSGT00940000162495 #31	ENSGT00940000162526 #32	ENSGT00950000183086.a.b #33	ENSGT00940000156605 #34	ENSGT00940000157963	ENSGT00940000164229 #37	ENSGT00940000155987.b	ENSGT00940000160666
Boreoeutheria	ANCESTRAL SPECIES	6	ENSGT00510000049460 #8	ENSGT00940000159873 #9	ENSGT00390000005023.a #10	ENSGT01030000234816	ENSGT01090000259985.b.b.b.a.a.a #12	ENSGT00390000001745 #13	ENSGT00390000017213.A #14	ENSGT00940000159164 #15	ENSGT01000000214413.b.a.b.a #16	ENSGT00390000017343 #17	ENSGT00940000156036 #18	ENSGT00390000013354.d.b ##19	ENSGT01030000234629.A	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242 #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000157473 #30	ENSGT00940000158621 #29	ENSGT00940000162495 #31	ENSGT00940000162526 #32	ENSGT00950000183086.a.b #33	ENSGT00940000156605 #34	ENSGT00940000157963	ENSGT00560000078483	ENSGT00940000164229 #37	ENSGT00940000155987.b
Euarchontoglires	ANCESTRAL SPECIES	6	ENSGT00510000049460 #8	ENSGT00940000159873 #9	ENSGT00390000005023.a #10	ENSGT01030000234816	ENSGT01090000259985.b.b.b.a.a.a #12	ENSGT00390000001745 #13	ENSGT00390000017213.A #14	ENSGT00940000159164 #15	ENSGT01000000214413.b.a.b.a #16	ENSGT00390000017343 #17	ENSGT00940000156036 #18	ENSGT00390000013354.d.b ##19	ENSGT01030000234629.A	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242 #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000157473 #30	ENSGT00940000158621 #29	ENSGT00940000162495 #31	ENSGT00940000162526 #32	ENSGT00950000183086.a.b #33	ENSGT00940000156605 #34	ENSGT00940000157963	ENSGT00560000078483	ENSGT00940000164229 #37	ENSGT00940000155987.b
Primates	ANCESTRAL SPECIES	6	ENSGT00940000159873 #9	ENSGT00390000005023.a #10	ENSGT01030000234816	ENSGT01090000259985.b.b.b.a.a.a #12	ENSGT00390000001745 #13	ENSGT00390000017213.A #14	ENSGT00940000159164 #15	ENSGT01000000214413.b.a.b.a #16	ENSGT00390000017343 #17	ENSGT00940000156036 #18	ENSGT00390000013354.d.a.b #19	ENSGT01030000234629.A	ENSGT00390000013354.d.b ##19	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242 #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000157473 #30	ENSGT00940000158621 #29	ENSGT00940000162495 #31	ENSGT00940000162526 #32	ENSGT00950000183086.a.b #33	ENSGT00940000156605 #34	ENSGT00940000157963	ENSGT00560000078483	ENSGT00940000164229 #37	ENSGT00940000155987.b
Haplorrhini	ANCESTRAL SPECIES	39	ENSGT00940000159873 #9	ENSGT00390000005023.a #10	ENSGT00910000146795 #11	ENSGT01030000234816	ENSGT01090000259985.b.b.b.a.a.a #12	ENSGT00390000001745 #13	ENSGT00390000017213.A #14	ENSGT00940000159164 #15	ENSGT01000000214413.b.a.b.a #16	ENSGT00390000017343 #17	ENSGT00940000156036 #18	ENSGT00390000013354.d.a.b #19	ENSGT01030000234629.A	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242 #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000157473 #30	ENSGT00940000158621 #29	ENSGT00940000162495 #31	ENSGT00940000162526 #32	ENSGT00950000183086.a.b #33	ENSGT00940000156605 #34	ENSGT00560000078483	ENSGT00940000164229 #37	ENSGT00940000155987.b
Simiiformes	ANCESTRAL SPECIES	4	ENSGT00510000049460 #8	ENSGT00940000159873 #9	ENSGT00390000005023.a #10	ENSGT01030000234816	ENSGT01090000259985.b.b.b.a.a.a #12	ENSGT00390000001745 #13	ENSGT00390000017213.A #14	ENSGT00940000159164 #15	ENSGT01000000214413.b.a.b.a #16	ENSGT00390000017343 #17	ENSGT00940000156036 #18	ENSGT00390000013354.d.a.b #19	ENSGT01030000234629.A	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242 #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000157473 #30	ENSGT00940000158621 #29	ENSGT00940000162495 #31	ENSGT00940000162526 #32	ENSGT00950000183086.a.b #33	ENSGT00940000156605 #34	ENSGT00940000162316 #36	ENSGT00390000002365.x.c.a	ENSGT00940000164229 #37	ENSGT00560000078483
Catarrhini	ANCESTRAL SPECIES	4	ENSGT00510000049460 #8	ENSGT00940000159873 #9	ENSGT00390000005023.a #10	ENSGT01030000234816	ENSGT01090000259985.b.b.b.a.a.a #12	ENSGT00390000001745 #13	ENSGT00390000017213.A #14	ENSGT00940000159164 #15	ENSGT01000000214413.b.a.b.a #16	ENSGT00390000017343 #17	ENSGT00940000156036 #18	ENSGT00390000013354.d.a.b #19	ENSGT01030000234629.A	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242 #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000157473 #30	ENSGT00940000158621 #29	ENSGT00940000162495 #31	ENSGT00940000162526 #32	ENSGT00950000183086.a.b #33	ENSGT00940000156605 #34	ENSGT00940000162316 #36	ENSGT00940000164229 #37	ENSGT00940000155987.b	ENSGT00940000161190
Cercopithecidae	ANCESTRAL SPECIES	3	ENSGT00510000049460 #8	ENSGT00940000159873 #9	ENSGT00390000005023.a #10	ENSGT01030000234816	ENSGT01090000259985.b.b.b.a.a.a #12	ENSGT00390000001745 #13	ENSGT00390000017213.A #14	ENSGT00940000159164 #15	ENSGT01000000214413.b.a.b.a #16	ENSGT00390000017343 #17	ENSGT00940000156036 #18	ENSGT00390000013354.d.a.b.a.b #19	ENSGT01030000234629.A	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242 #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a.i.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000157473 #30	ENSGT00940000158621.j.a #29	ENSGT00940000158621.j.b ##29	ENSGT00940000162495 #31	ENSGT00940000162526 #32	ENSGT00950000183086.a.b #33	ENSGT00940000156605 #34	ENSGT00940000162316 #36	ENSGT00390000002365.x.d.d	ENSGT00940000164229 #37
Cercopithecinae	ANCESTRAL SPECIES	7	ENSGT00940000159873 #9	ENSGT00390000005023.a #10	ENSGT00910000146795 #11	ENSGT01030000234816	ENSGT01090000259985.b.b.b.a.a.a #12	ENSGT00390000001745 #13	ENSGT00390000017213.A #14	ENSGT00940000159164 #15	ENSGT01000000214413.b.a.b.a #16	ENSGT00390000017343 #17	ENSGT00940000156036 #18	ENSGT00390000013354.d.a.b.a.b #19	ENSGT01030000234629.A	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242 #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a.i.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000157473 #30	ENSGT00940000158621.j.a #29	ENSGT00940000158621.j.b ##29	ENSGT00940000162495 #31	ENSGT00940000162526 #32	ENSGT00950000183086.a.b #33	ENSGT00940000156605 #34	ENSGT00940000162316 #36	ENSGT00390000002365.x.d.d	ENSGT00940000164229 #37
Cercopithecinae_a	ANCESTRAL SPECIES	25	ENSGT00510000049460 #8	ENSGT00940000159873 #9	ENSGT00390000005023.a #10	ENSGT00910000146795 #11	ENSGT01090000259985.b.b.b.a.a.a #12	ENSGT00390000001745 #13	ENSGT00390000017213.A #14	ENSGT00940000159164 #15	ENSGT01000000214413.b.a.b.a #16	ENSGT00390000017343 #17	ENSGT00940000156036 #18	ENSGT00390000013354.d.a.b.a.b #19	ENSGT01030000234629.A	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242 #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a.i.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000157473.e #28	ENSGT00940000158621.j.a #29	ENSGT00940000157473.f #30	ENSGT00940000158621.j.b ##29	ENSGT00940000162495 #31	ENSGT00940000162526 #32	ENSGT00950000183086.a.b #33	ENSGT00940000156605 #34	ENSGT00940000153309.c.b.a.a.b.a.b.a.a	ENSGT00940000153336.e.a.a.a.a #35
Cercopithecinae_b	ANCESTRAL SPECIES	43	ENSGT00510000049460 #8	ENSGT00940000159873 #9	ENSGT00390000005023.a #10	ENSGT00910000146795 #11	ENSGT01090000259985.b.b.b.a.a.a #12	ENSGT00390000001745 #13	ENSGT00390000017213.A #14	ENSGT00940000159164 #15	ENSGT01000000214413.b.a.b.a #16	ENSGT00390000017343 #17	ENSGT00940000156036 #18	ENSGT00390000013354.d.a.b.a.b #19	ENSGT01030000234629.A	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242 #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a.i.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000157473.e #28	ENSGT00940000158621.j.a #29	ENSGT00940000157473.f #30	ENSGT00940000158621.j.b ##29	ENSGT00940000162495 #31	ENSGT00940000162526 #32	ENSGT00950000183086.a.b #33	ENSGT00940000156605 #34	ENSGT00940000153336.e.a.a.a.a.b #35	ENSGT00940000162316 #36
Olive baboon	MODERN SPECIES	19	ZNF384 (ENSPANG00000014845) #7	PIANP (ENSPANG00000019209) #8	COPS7A (ENSPANG00000010017) #9	MLF2 (ENSPANG00000012265) #10	ENSPANG00000001015 #11	LAG3 (ENSPANG00000001016) #12	CD4 (ENSPANG00000020297) #13	GPR162 (ENSPANG00000014122) #14	P3H3 (ENSPANG00000020167) #15	GNB3 (ENSPANG00000020582) #16	CDCA3 (ENSPANG00000017670) #17	USP5 (ENSPANG00000006040) #18	ENSPANG00000021028 #19	LRRC23 (ENSPANG00000017212) #20	ENO2 (ENSPANG00000004280) #21	ATN1 (ENSPANG00000024515) #22	C12orf57 (ENSPANG00000020210) #23	PTPN6 (ENSPANG00000024514) #24	ENSPANG00000029255 #25	EMG1 (ENSPANG00000005523) #26	LPCAT3 (ENSPANG00000017049) #27	ENSPANG00000012264 #28	C1R (ENSPANG00000042479) #29	ENSPANG00000006741 #30	C1RL (ENSPANG00000030761) #31	RBP5 (ENSPANG00000010166) #32	CLSTN3 (ENSPANG00000017048) #33	PEX5 (ENSPANG00000014887) #34	ENSPANG00000005737 #35	ACSM4 (ENSPANG00000013788) #36	CD163L1 (ENSPANG00000006740) #37
Cercopithecinae_d	ANCESTRAL SPECIES	66	ENSGT00510000049460 #8	ENSGT00940000159873 #9	ENSGT00390000005023.a #10	ENSGT00910000146795 #11	ENSGT01090000259985.b.b.b.a.a.a #12	ENSGT00390000001745 #13	ENSGT00390000017213.A #14	ENSGT00940000159164 #15	ENSGT01000000214413.b.a.b.a #16	ENSGT00390000017343 #17	ENSGT00940000156036 #18	ENSGT00390000013354.d.a.b.a.b #19	ENSGT01030000234629.A	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242 #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a.i.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000157473.f #30	ENSGT00940000157473.e #28	ENSGT00940000158621.j.a #29	ENSGT00940000158621.i ##29	ENSGT00940000162495 #31	ENSGT00940000162526 #32	ENSGT00950000183086.a.b #33	ENSGT00940000156605 #34	ENSGT00940000162316 #36	ENSGT00940000164229 #37
Drill	MODERN SPECIES	866	PIANP (ENSMLEG00000041991) #8	COPS7A (ENSMLEG00000037093) #9	MLF2 (ENSMLEG00000037897) #10	ENSMLEG00000039403 #11	LAG3 (ENSMLEG00000009222) #12	CD4 (ENSMLEG00000032879) #13	GPR162 (ENSMLEG00000013920) #14	P3H3 (ENSMLEG00000013218) #15	GNB3 (ENSMLEG00000025857) #16	CDCA3 (ENSMLEG00000034056) #17	USP5 (ENSMLEG00000043334) #18	ENSMLEG00000023085 #19	SPSB2 (ENSMLEG00000009403)	LRRC23 (ENSMLEG00000044254) #20	ENO2 (ENSMLEG00000035763) #21	ATN1 (ENSMLEG00000027702) #22	C12orf57 (ENSMLEG00000043045) #23	PTPN6 (ENSMLEG00000031501) #24	ENSMLEG00000031652 #25	EMG1 (ENSMLEG00000026029) #26	LPCAT3 (ENSMLEG00000035672) #27	ENSMLEG00000043082	ENSMLEG00000028216 #28	ENSMLEG00000037813 #29	ENSMLEG00000028458 #30	ENSMLEG00000040182 ##29	C1RL (ENSMLEG00000040411) #31	RBP5 (ENSMLEG00000034338) #32	CLSTN3 (ENSMLEG00000043226) #33	PEX5 (ENSMLEG00000040233) #34	ENSMLEG00000033967 ##35
Sooty mangabey	MODERN SPECIES	609	PIANP (ENSCATG00000035419) #8	COPS7A (ENSCATG00000030189) #9	MLF2 (ENSCATG00000040743) #10	ENSCATG00000041394 #11	LAG3 (ENSCATG00000042803) #12	CD4 (ENSCATG00000038270) #13	GPR162 (ENSCATG00000029723) #14	P3H3 (ENSCATG00000040167) #15	GNB3 (ENSCATG00000024663) #16	CDCA3 (ENSCATG00000041241) #17	USP5 (ENSCATG00000036103) #18	ENSCATG00000004123 #19	SPSB2 (ENSCATG00000039105)	LRRC23 (ENSCATG00000033024) #20	ENO2 (ENSCATG00000042438) #21	ATN1 (ENSCATG00000012735) #22	C12orf57 (ENSCATG00000041423) #23	PTPN6 (ENSCATG00000010859) #24	ENSCATG00000038231 #25	EMG1 (ENSCATG00000016750) #26	LPCAT3 (ENSCATG00000036846) #27	C1S (ENSCATG00000032150) #30	C1R (ENSCATG00000038989) #29	C1RL (ENSCATG00000044912) #31	ENSCATG00000029942 ##29	RBP5 (ENSCATG00000041907) #32	CLSTN3 (ENSCATG00000032731) #33	PEX5 (ENSCATG00000033822) #34	ENSCATG00000037193	ACSM4 (ENSCATG00000039866) #36	CD163L1 (ENSCATG00000006510) #37
Macaca	ANCESTRAL SPECIES	30	ENSGT00510000049460 #8	ENSGT00940000159873 #9	ENSGT00390000005023.a #10	ENSGT00910000146795 #11	ENSGT01090000259985.b.b.b.a.a.a #12	ENSGT00390000001745 #13	ENSGT00390000017213.A #14	ENSGT00940000159164 #15	ENSGT01000000214413.b.a.b.a #16	ENSGT00390000017343 #17	ENSGT00940000156036 #18	ENSGT00390000013354.d.a.b.a.b #19	ENSGT01030000234629.A	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242 #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a.i.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000157473.e #28	ENSGT00940000158621.j.a #29	ENSGT00940000158621.j.b ##29	ENSGT00940000162495 #31	ENSGT00940000162526 #32	ENSGT00950000183086.a.b #33	ENSGT00940000156605 #34	ENSGT00940000153309.c.b.a.a.b.a.b.a.a	ENSGT00940000153336.e.a.a.a.a #35	ENSGT00940000162316 #36
Macaca_a	ANCESTRAL SPECIES	6	ENSGT00940000159873 #9	ENSGT00390000005023.a #10	ENSGT00910000146795 #11	ENSGT01030000237444	ENSGT01090000259985.b.b.b.a.a.a #12	ENSGT00390000001745 #13	ENSGT00390000017213.A #14	ENSGT00940000159164 #15	ENSGT01000000214413.b.a.b.a #16	ENSGT00390000017343 #17	ENSGT00940000156036 #18	ENSGT00390000013354.d.a.b.a.b #19	ENSGT01030000234629.A	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242 #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a.i.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000157473.e #28	ENSGT00940000158621.j.a #29	ENSGT00940000158621.j.b ##29	ENSGT00940000162495 #31	ENSGT01030000240307	ENSGT00950000183086.a.b #33	ENSGT00940000156605 #34	ENSGT00940000162316 #36	ENSGT00940000164229 #37	ENSGT00940000155987.b
Crab-eating macaque	MODERN SPECIES	2	ING4 (ENSMFAG00000001174)	ZNF384 (ENSMFAG00000037538) #7	PIANP (ENSMFAG00000001518) #8	COPS7A (ENSMFAG00000038467) #9	MLF2 (ENSMFAG00000060388) #10	ENSMFAG00000033048 #11	CD4 (ENSMFAG00000041228) #13	GPR162 (ENSMFAG00000037690) #14	GNB3 (ENSMFAG00000029449) #16	CDCA3 (ENSMFAG00000042353) #17	USP5 (ENSMFAG00000000814) #18	ENSMFAG00000032800 #19	SPSB2 (ENSMFAG00000036312)	LRRC23 (ENSMFAG00000040201) #20	ENO2 (ENSMFAG00000003928) #21	ATN1 (ENSMFAG00000001982) #22	C12orf57 (ENSMFAG00000054549) #23	PTPN6 (ENSMFAG00000033356) #24	ENSMFAG00000042277 #25	EMG1 (ENSMFAG00000037142) #26	LPCAT3 (ENSMFAG00000038298) #27	C1S (ENSMFAG00000044978) #28	ENSMFAG00000040641 #29	C1RL (ENSMFAG00000000168) #31	ENSMFAG00000035975 ##29	ENSMFAG00000050568	CLSTN3 (ENSMFAG00000042634) #33	PEX5 (ENSMFAG00000037602) #34	ENSMFAG00000050305 ##35	ENSMFAG00000044995 ##35	ACSM4 (ENSMFAG00000032770) #36
Rhesus	MODERN SPECIES	2	COPS7A (ENSMMUG00000009583) #9	MLF2 (ENSMMUG00000012206) #10	ENSMMUG00000050151 #11	ENSMMUG00000039070	LAG3 (ENSMMUG00000056979) #12	CD4 (ENSMMUG00000013202) #13	GPR162 (ENSMMUG00000049147) #14	P3H3 (ENSMMUG00000005189) #15	GNB3 (ENSMMUG00000005190) #16	CDCA3 (ENSMMUG00000005191) #17	USP5 (ENSMMUG00000005192) #18	TPI1 (ENSMMUG00000052852) #19	SPSB2 (ENSMMUG00000044556)	LRRC23 (ENSMMUG00000001781) #20	ENO2 (ENSMMUG00000009443) #21	ATN1 (ENSMMUG00000010201) #22	C11H12orf57 (ENSMMUG00000064031) #23	PTPN6 (ENSMMUG00000010203) #24	PHB2 (ENSMMUG00000010205) #25	EMG1 (ENSMMUG00000010207) #26	LPCAT3 (ENSMMUG00000010210) #27	C1S (ENSMMUG00000012786) #28	C1R (ENSMMUG00000006470) #29	C1RL (ENSMMUG00000008897) #31	RBP5 (ENSMMUG00000059276)	CLSTN3 (ENSMMUG00000008899) #33	PEX5 (ENSMMUG00000004242) #34	CD163L1 (ENSMMUG00000022109) #37	ACSM4 (ENSMMUG00000022106) #36	CD163 (ENSMMUG00000005150)	APOBEC1 (ENSMMUG00000051090)
Pig-tailed macaque	MODERN SPECIES	593	PIANP (ENSMNEG00000033631) #8	COPS7A (ENSMNEG00000031298) #9	MLF2 (ENSMNEG00000034081) #10	ENSMNEG00000033214 #11	LAG3 (ENSMNEG00000024032) #12	CD4 (ENSMNEG00000043009) #13	GPR162 (ENSMNEG00000041385) #14	P3H3 (ENSMNEG00000028584) #15	GNB3 (ENSMNEG00000036587) #16	CDCA3 (ENSMNEG00000037981) #17	USP5 (ENSMNEG00000029869) #18	ENSMNEG00000041858 #19	SPSB2 (ENSMNEG00000034014)	LRRC23 (ENSMNEG00000030007) #20	ENO2 (ENSMNEG00000034777) #21	ATN1 (ENSMNEG00000037346) #22	C12orf57 (ENSMNEG00000033742) #23	PTPN6 (ENSMNEG00000038390) #24	ENSMNEG00000006922 #25	EMG1 (ENSMNEG00000040907) #26	LPCAT3 (ENSMNEG00000018059) #27	C1S (ENSMNEG00000041029) #30	C1R (ENSMNEG00000006341) #29	C1RL (ENSMNEG00000030292) #31	RBP5 (ENSMNEG00000044428) #32	CLSTN3 (ENSMNEG00000029706) #33	PEX5 (ENSMNEG00000006946) #34	ENSMNEG00000043577 #35	ACSM4 (ENSMNEG00000041684) #36	CD163L1 (ENSMNEG00000041441) #37	CD163 (ENSMNEG00000031460)
Vervet Monkey	MODERN SPECIES	2	ZNF384 (ENSCSAG00000010379) #7	PIANP (ENSCSAG00000010351) #8	COPS7A (ENSCSAG00000010346) #9	MLF2 (ENSCSAG00000010338) #10	ENSCSAG00000010328	LAG3 (ENSCSAG00000010305) #12	CD4 (ENSCSAG00000010263) #13	GPR162 (ENSCSAG00000010255) #14	P3H3 (ENSCSAG00000010242) #15	GNB3 (ENSCSAG00000010234) #16	CDCA3 (ENSCSAG00000010224) #17	USP5 (ENSCSAG00000010215) #18	TPI1 (ENSCSAG00000010202) #19	LRRC23 (ENSCSAG00000010193) #20	ENO2 (ENSCSAG00000010188) #21	ATN1 (ENSCSAG00000010176) #22	C12orf57 (ENSCSAG00000010169) #23	PTPN6 (ENSCSAG00000010157) #24	PHB2 (ENSCSAG00000010145) ##25	EMG1 (ENSCSAG00000010140) #26	LPCAT3 (ENSCSAG00000010132) #27	C1R (ENSCSAG00000010122) #29	C1S (ENSCSAG00000010067) #30	C1RL (ENSCSAG00000009944) #31	RBP5 (ENSCSAG00000009936) #32	CLSTN3 (ENSCSAG00000009922) #33	PEX5 (ENSCSAG00000009909) #34	ACSM4 (ENSCSAG00000009890) #36	ENSCSAG00000009860	CD163L1 (ENSCSAG00000009836) #37	CD163 (ENSCSAG00000009826)
Rhinopithecus	ANCESTRAL SPECIES	54	ENSGT00940000159873 #9	ENSGT00390000005023.a #10	ENSGT00910000146795 #11	ENSGT01030000234816	ENSGT01090000259985.b.b.b.a.a.a #12	ENSGT00390000001745 #13	ENSGT00390000017213.A #14	ENSGT00940000159164 #15	ENSGT01000000214413.b.a.b.a #16	ENSGT00390000017343 #17	ENSGT00940000156036 #18	ENSGT00390000013354.d.a.b.a.b #19	ENSGT01030000234629.A	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242 #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a.i.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000157473 #30	ENSGT00940000158621.j.a #29	ENSGT00940000158621.j.b ##29	ENSGT00940000162495 #31	ENSGT00940000162526 #32	ENSGT00950000183086.a.b #33	ENSGT00940000156605 #34	ENSGT00940000164229 #37	ENSGT00940000155987.b	ENSGT00940000161190
Black snub-nosed monkey	MODERN SPECIES	1066	ENSRBIG00000037587 #9	COPS7A (ENSRBIG00000034305) #9	MLF2 (ENSRBIG00000012695) #10	PTMS (ENSRBIG00000042120)	LAG3 (ENSRBIG00000034533) #12	CD4 (ENSRBIG00000039046) #13	GPR162 (ENSRBIG00000035479) #14	P3H3 (ENSRBIG00000034982) #15	GNB3 (ENSRBIG00000032871) #16	CDCA3 (ENSRBIG00000041965) #17	USP5 (ENSRBIG00000029793) #18	ENSRBIG00000041436 #19	SPSB2 (ENSRBIG00000043951)	LRRC23 (ENSRBIG00000040674) #20	ENO2 (ENSRBIG00000038169) #21	ATN1 (ENSRBIG00000030578) #22	C12orf57 (ENSRBIG00000040051) #23	PTPN6 (ENSRBIG00000043222) #24	ENSRBIG00000044479 #25	EMG1 (ENSRBIG00000031315) #26	LPCAT3 (ENSRBIG00000042336) #27	C1S (ENSRBIG00000037071) #30	ENSRBIG00000034925 #29	ENSRBIG00000018800 ##29	C1RL (ENSRBIG00000019825) #31	RBP5 (ENSRBIG00000015752) #32	CLSTN3 (ENSRBIG00000043964) #33	PEX5 (ENSRBIG00000031840) #34	ENSRBIG00000007264	CD163L1 (ENSRBIG00000033931) #37	CD163 (ENSRBIG00000030958)
Golden snub-nosed monkey	MODERN SPECIES	2549	PIANP (ENSRROG00000034978) #8	COPS7A (ENSRROG00000041726) #9	MLF2 (ENSRROG00000038823) #10	ENSRROG00000044634 #11	LAG3 (ENSRROG00000030083) #12	CD4 (ENSRROG00000028161) #13	GPR162 (ENSRROG00000042378) #14	P3H3 (ENSRROG00000030746) #15	GNB3 (ENSRROG00000023776) #16	CDCA3 (ENSRROG00000042250) #17	USP5 (ENSRROG00000043893) #18	ENSRROG00000045274 #19	SPSB2 (ENSRROG00000043708)	LRRC23 (ENSRROG00000040181) #20	ENO2 (ENSRROG00000031379) #21	ATN1 (ENSRROG00000032627) #22	C12orf57 (ENSRROG00000031505) #23	PTPN6 (ENSRROG00000038357) #24	ENSRROG00000025259 #25	EMG1 (ENSRROG00000032961) #26	LPCAT3 (ENSRROG00000033408) #27
Hominoidea	ANCESTRAL SPECIES	5	ENSGT00940000159873 #9	ENSGT00390000005023.a #10	ENSGT00910000146795 #11	ENSGT01090000259985.b.b.b.a.a.a #12	ENSGT00390000001745 #13	ENSGT00390000017213.A #14	ENSGT00940000159164 #15	ENSGT01000000214413.b.a.b.a #16	ENSGT00390000017343 #17	ENSGT00940000156036 #18	ENSGT00390000013354.d.a.b #19	ENSGT01030000234629.A	ENSGT00950000183000.c.a.b.r.b	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242 #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000157473 #30	ENSGT00940000158621 #29	ENSGT00940000162495 #31	ENSGT00940000162526 #32	ENSGT00950000183086.a.b #33	ENSGT00940000156605 #34	ENSGT00940000162316 #36	ENSGT00390000002365.x.c.a	ENSGT00940000164229 #37	ENSGT00940000155987.b
Hominidae	ANCESTRAL SPECIES	4	ENSGT00390000005023.a #10	ENSGT00910000146795 #11	ENSGT01030000234816	ENSGT01090000259985.b.b.b.a.a.a #12	ENSGT00390000001745 #13	ENSGT00390000017213.A #14	ENSGT00940000159164 #15	ENSGT01000000214413.b.a.b.a #16	ENSGT00390000017343 #17	ENSGT00940000156036 #18	ENSGT00390000013354.d.a.b #19	ENSGT01030000234629.A	ENSGT00950000183000.c.a.b.r.b	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242 #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000157473 #30	ENSGT00940000158621 #29	ENSGT00940000162495 #31	ENSGT00940000162526 #32	ENSGT00950000183086.a.b #33	ENSGT00940000156605 #34	ENSGT00940000162316 #36	ENSGT00390000002365.x.c.a	ENSGT00940000164229 #37	ENSGT00940000155987.b
Orangutan	MODERN SPECIES	3	PIANP (ENSPPYG00000004197) #8	COPS7A (ENSPPYG00000004198) #9	MLF2 (ENSPPYG00000004199) #10	ENSPPYG00000041549 #11	LAG3 (ENSPPYG00000004201) #12	CD4 (ENSPPYG00000004202) #13	GPR162 (ENSPPYG00000038576) #14	P3H3 (ENSPPYG00000004203) #15	GNB3 (ENSPPYG00000004204) #16	CDCA3 (ENSPPYG00000004205) #17	USP5 (ENSPPYG00000004206) #18	TPI1 (ENSPPYG00000004207) #19	SPSB2 (ENSPPYG00000004208)	LRRC23 (ENSPPYG00000004209) #20	ENO2 (ENSPPYG00000004210) #21	ATN1 (ENSPPYG00000004211) #22	ENSPPYG00000004212 #23	PTPN6 (ENSPPYG00000004213) #24	PHB2 (ENSPPYG00000004214) #25	EMG1 (ENSPPYG00000004215) #26	LPCAT3 (ENSPPYG00000004216) #27	C1S (ENSPPYG00000004217) #30	C1R (ENSPPYG00000004218) #29	ENSPPYG00000004220 #29	ENSPPYG00000004221	RBP5 (ENSPPYG00000032813) #32	CLSTN3 (ENSPPYG00000004223) #33	PEX5 (ENSPPYG00000004224) #34	ACSM4 (ENSPPYG00000004225) #36	ENSPPYG00000039124	ENSPPYG00000037359
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	5	ENSGT00940000159873 #9	ENSGT00390000005023.a #10	ENSGT01030000234816	ENSGT01090000259985.b.b.b.a.a.a #12	ENSGT00390000001745 #13	ENSGT00390000017213.A #14	ENSGT00940000159164 #15	ENSGT01000000214413.b.a.b.a #16	ENSGT00390000017343 #17	ENSGT00940000156036 #18	ENSGT00390000013354.d.a.b.c.b #19	ENSGT01030000234629.A	ENSGT00950000183000.c.a.b.r.b	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242 #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000157473 #30	ENSGT00940000158621 #29	ENSGT00940000162495 #31	ENSGT00530000065099	ENSGT00940000162526 #32	ENSGT00950000183086.a.b #33	ENSGT00940000156605 #34	ENSGT00940000162316 #36	ENSGT00940000164229 #37	ENSGT00940000155987.b
Homo/Pan group	ANCESTRAL SPECIES	6	ENSGT00940000159873 #9	ENSGT00390000005023.a #10	ENSGT01030000234816	ENSGT01090000259985.b.b.b.a.a.a #12	ENSGT00390000001745 #13	ENSGT00390000017213.A #14	ENSGT00940000159164 #15	ENSGT01000000214413.b.a.b.a #16	ENSGT00390000017343 #17	ENSGT00940000156036 #18	ENSGT00390000013354.d.a.b.c.b #19	ENSGT01030000234629.A	ENSGT00950000183000.c.a.b.r.b	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242 #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000157473 #30	ENSGT00940000158621 #29	ENSGT00940000162495 #31	ENSGT00530000065099	ENSGT00940000162526 #32	ENSGT00950000183086.a.b #33	ENSGT00940000156605 #34	ENSGT00940000162316 #36	ENSGT00940000164229 #37	ENSGT00940000155987.b
Pan	ANCESTRAL SPECIES	31	ENSGT00940000159873 #9	ENSGT00390000005023.a #10	ENSGT00910000146795 #11	ENSGT01090000259985.b.b.b.a.a.a #12	ENSGT00390000001745 #13	ENSGT00390000017213.A #14	ENSGT00940000159164 #15	ENSGT01000000214413.b.a.b.a #16	ENSGT00390000017343 #17	ENSGT00940000156036 #18	ENSGT00390000013354.d.a.b.c.b #19	ENSGT01030000234629.A	ENSGT00950000183000.c.a.b.r.b	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00940000159480 #24	ENSGT00950000183070.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000157473 #30	ENSGT00940000158621 #29	ENSGT00940000162495 #31	ENSGT00530000065099	ENSGT00940000162526 #32	ENSGT00950000183086.a.b #33	ENSGT00940000156605 #34	ENSGT00940000162316 #36	ENSGT00940000164229 #37	ENSGT00940000155987.b	ENSGT00940000161190
Bonobo	MODERN SPECIES	3	COPS7A (ENSPPAG00000022715) #9	MLF2 (ENSPPAG00000034825) #10	ENSPPAG00000033598 #11	LAG3 (ENSPPAG00000026677) #12	CD4 (ENSPPAG00000034703) #13	GPR162 (ENSPPAG00000005842) #14	P3H3 (ENSPPAG00000036812) #15	GNB3 (ENSPPAG00000042920) #16	CDCA3 (ENSPPAG00000036023) #17	USP5 (ENSPPAG00000037918) #18	ENSPPAG00000043988 #19	SPSB2 (ENSPPAG00000034889)	ENSPPAG00000042879	LRRC23 (ENSPPAG00000038236) #20	ENO2 (ENSPPAG00000039920) #21	ATN1 (ENSPPAG00000042467) #22	PTPN6 (ENSPPAG00000027742) #24	PHB2 (ENSPPAG00000037135) #25	EMG1 (ENSPPAG00000033046) #26	LPCAT3 (ENSPPAG00000036224) #27	C1S (ENSPPAG00000042864) #30	C1R (ENSPPAG00000034994) #29	C1RL (ENSPPAG00000037116) #31	ENSPPAG00000042138	RBP5 (ENSPPAG00000027394) #32	CLSTN3 (ENSPPAG00000032428) #33	PEX5 (ENSPPAG00000040706) #34	ACSM4 (ENSPPAG00000031185) #36	CD163L1 (ENSPPAG00000043132) #37	CD163 (ENSPPAG00000036221)	ENSPPAG00000040606
Chimpanzee	MODERN SPECIES	3	COPS7A (ENSPTRG00000004586) #9	MLF2 (ENSPTRG00000004587) #10	PTMS (ENSPTRG00000004588) #11	LAG3 (ENSPTRG00000024384) #12	CD4 (ENSPTRG00000004590) #13	GPR162 (ENSPTRG00000038667) #14	P3H3 (ENSPTRG00000004591) #15	GNB3 (ENSPTRG00000004592) #16	CDCA3 (ENSPTRG00000004593) #17	USP5 (ENSPTRG00000004594) #18	TPI1 (ENSPTRG00000004595) #19	SPSB2 (ENSPTRG00000004596)	ENSPTRG00000051149	LRRC23 (ENSPTRG00000004597) #20	ENO2 (ENSPTRG00000050094) #21	ATN1 (ENSPTRG00000040559) #22	PTPN6 (ENSPTRG00000004601) #24	PHB2 (ENSPTRG00000046876) #25	EMG1 (ENSPTRG00000048050) #26	LPCAT3 (ENSPTRG00000004604) #27	C1S (ENSPTRG00000004605) #30	C1R (ENSPTRG00000004606) #29	C1RL (ENSPTRG00000004607) #31	ENSPTRG00000050311	RBP5 (ENSPTRG00000004608) #32	CLSTN3 (ENSPTRG00000004609) #33	PEX5 (ENSPTRG00000004610) #34	ACSM4 (ENSPTRG00000034486) #36	CD163L1 (ENSPTRG00000004612) #37	CD163 (ENSPTRG00000004613)	PTPN11 (ENSPTRG00000042397)
Human	MODERN SPECIES	3	PIANP (ENSG00000139200) #8	COPS7A (ENSG00000111652) #9	MLF2 (ENSG00000089693) #10	PTMS (ENSG00000159335)	LAG3 (ENSG00000089692) #12	CD4 (ENSG00000010610) #13	GPR162 (ENSG00000250510) #14	P3H3 (ENSG00000110811) #15	GNB3 (ENSG00000111664) #16	CDCA3 (ENSG00000111665) #17	USP5 (ENSG00000111667) #18	TPI1 (ENSG00000111669) #19	SPSB2 (ENSG00000111671)	LRRC23 (ENSG00000010626) #20	ENO2 (ENSG00000111674) #21	ATN1 (ENSG00000111676) #22	C12orf57 (ENSG00000111678) #23	PTPN6 (ENSG00000111679) #24	PHB2 (ENSG00000215021) #25	EMG1 (ENSG00000126749) #26	LPCAT3 (ENSG00000111684) #27	C1S (ENSG00000182326) #30	C1R (ENSG00000159403) #29	C1RL (ENSG00000139178) #31	RBP5 (ENSG00000139194) #32	CLSTN3 (ENSG00000139182) #33	PEX5 (ENSG00000139197) #34	ACSM4 (ENSG00000215009) #36	CD163L1 (ENSG00000177675) #37	CD163 (ENSG00000177575)	APOBEC1 (ENSG00000111701)
Gibbon	MODERN SPECIES	15	COPS7A (ENSNLEG00000004510) #9	MLF2 (ENSNLEG00000004587) #10	ENSNLEG00000004666 #11	ENSNLEG00000004668 #12	CD4 (ENSNLEG00000004671) #13	GPR162 (ENSNLEG00000004700) #14	P3H3 (ENSNLEG00000004705) #15	GNB3 (ENSNLEG00000004736) #16	CDCA3 (ENSNLEG00000004752) #17	USP5 (ENSNLEG00000004763) #18	TPI1 (ENSNLEG00000004821) #19	ENSNLEG00000018833	ENSNLEG00000028508	LRRC23 (ENSNLEG00000004880) #20	ENO2 (ENSNLEG00000032245) #21	ATN1 (ENSNLEG00000032638) #22	PTPN6 (ENSNLEG00000004969) #24	ENSNLEG00000005021 #25	EMG1 (ENSNLEG00000005080) #26	LPCAT3 (ENSNLEG00000005092) #27	C1S (ENSNLEG00000005106) #30	ENSNLEG00000026861 #29	C1RL (ENSNLEG00000005143) #31	RBP5 (ENSNLEG00000005160) #32	CLSTN3 (ENSNLEG00000005169) #33	PEX5 (ENSNLEG00000005190) #34	ACSM4 (ENSNLEG00000005246) #36	CD163L1 (ENSNLEG00000005255) #37	CD163 (ENSNLEG00000005300)	APOBEC1 (ENSNLEG00000005342)	GDF3 (ENSNLEG00000005350)
Platyrrhini	ANCESTRAL SPECIES	46	ENSGT00510000049460 #8	ENSGT00940000159873 #9	ENSGT00390000005023.a #10	ENSGT01030000234816	ENSGT01090000259985.b.b.b.a.a.a #12	ENSGT00390000001745 #13	ENSGT00390000017213.A #14	ENSGT00940000159164 #15	ENSGT01000000214413.b.a.b.a #16	ENSGT00390000017343 #17	ENSGT00940000156036 #18	ENSGT00390000013354.d.a.a.a ##19	ENSGT01030000234629.A	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242 #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a #25	ENSGT00390000000305.l.a #26	ENSGT01030000234564.b #27	ENSGT00940000157473 #30	ENSGT00940000158621 #29	ENSGT00940000162495 #31	ENSGT00940000162526 #32	ENSGT00950000183086.a.b #33	ENSGT00940000156605.c.a #34	ENSGT00940000162316 #36	ENSGT00940000164229 #37	ENSGT00950000182970.B
Cebidae	ANCESTRAL SPECIES	41	ENSGT00510000049460 #8	ENSGT00940000159873 #9	ENSGT00390000005023.a #10	ENSGT01030000234816	ENSGT01090000259985.b.b.b.a.a.a #12	ENSGT00390000001745 #13	ENSGT00390000017213.A #14	ENSGT00940000159164 #15	ENSGT01000000214413.b.a.b.a #16	ENSGT00390000017343 #17	ENSGT00940000156036 #18	ENSGT00390000013354.d.a.a.a ##19	ENSGT01030000234629.A	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242 #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a #25	ENSGT00390000000305.l.a #26	ENSGT01030000234564.b #27	ENSGT00940000157473 #30	ENSGT00940000158621 #29	ENSGT00940000162495 #31	ENSGT00940000162526 #32	ENSGT00950000183086.a.b #33	ENSGT00940000156605.c.a #34	ENSGT00940000162316 #36	ENSGT00940000164229 #37	ENSGT00950000182970.B
Cebidae_a	ANCESTRAL SPECIES	109			ENSGT00390000005023.a #10	ENSGT01030000234816	ENSGT01090000259985.b.b.b.a.a.a #12	ENSGT00390000001745 #13	ENSGT00390000017213.A #14	ENSGT00940000159164 #15	ENSGT01000000214413.b.a.b.a #16	ENSGT00390000017343 #17	ENSGT00940000156036 #18	ENSGT00390000013354.d.a.a.a ##19	ENSGT01030000234629.A	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242 #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a.o #25	ENSGT00390000000305.l.a #26	ENSGT01030000234564.b #27	ENSGT00940000157473 #30	ENSGT00940000158621 #29	ENSGT00940000162495 #31	ENSGT00940000162526 #32	ENSGT00950000183086.a.b #33	ENSGT00940000156605.c.a #34	ENSGT00940000162316 #36	ENSGT00940000164229 #37	ENSGT00950000182970.B
Capuchin	MODERN SPECIES	612			ENSCCAG00000035556 #10	ENSCCAG00000028105 #11	LAG3 (ENSCCAG00000028175) #12	CD4 (ENSCCAG00000031506) #13	GPR162 (ENSCCAG00000033816) #14	P3H3 (ENSCCAG00000024330) #15	GNB3 (ENSCCAG00000034678) #16	CDCA3 (ENSCCAG00000037915) #17	USP5 (ENSCCAG00000023448) #18	ENSCCAG00000034643 ##19	SPSB2 (ENSCCAG00000031725)	LRRC23 (ENSCCAG00000028550) #20	ENO2 (ENSCCAG00000028635) #21	ATN1 (ENSCCAG00000029777) #22	C12orf57 (ENSCCAG00000029803) #23	PTPN6 (ENSCCAG00000004809) #24	ENSCCAG00000022324 #25	EMG1 (ENSCCAG00000033309) #26	LPCAT3 (ENSCCAG00000021675) #27	C1S (ENSCCAG00000026672) #30	C1R (ENSCCAG00000028695) #29	C1RL (ENSCCAG00000031977) #31	RBP5 (ENSCCAG00000034315) #32	CLSTN3 (ENSCCAG00000021458) #33	PEX5 (ENSCCAG00000025351) #34	ACSM4 (ENSCCAG00000030290) #36	CD163L1 (ENSCCAG00000023214) #37	DDX11 (ENSCCAG00000024909)
Bolivian squirrel monkey	MODERN SPECIES	279			MLF2 (ENSSBOG00000023854) #10	PTMS (ENSSBOG00000023486)	LAG3 (ENSSBOG00000034046) #12	CD4 (ENSSBOG00000030484) #13	GPR162 (ENSSBOG00000027790) #14	P3H3 (ENSSBOG00000027303) #15	GNB3 (ENSSBOG00000023498) #16	ENSSBOG00000026227 #17	USP5 (ENSSBOG00000019870) #18	SPSB2 (ENSSBOG00000025788)	ENSSBOG00000029658 ##19	LRRC23 (ENSSBOG00000000324) #20	ENO2 (ENSSBOG00000028209) #21	ATN1 (ENSSBOG00000029921) #22	C12orf57 (ENSSBOG00000024165) #23	PTPN6 (ENSSBOG00000023720) #24	ENSSBOG00000003526 #25	EMG1 (ENSSBOG00000029143) #26	LPCAT3 (ENSSBOG00000026055) #27	ENSSBOG00000024635	C1S (ENSSBOG00000024987) #30	C1R (ENSSBOG00000028032) #29	RBP5 (ENSSBOG00000022075) #32	CLSTN3 (ENSSBOG00000029895) #33	ENSSBOG00000021855 #34	ENSSBOG00000029512
Marmoset	MODERN SPECIES	21	PIANP (ENSCJAG00000007910) #8	COPS7A (ENSCJAG00000007835) #9	MLF2 (ENSCJAG00000007681) #10	ENSCJAG00000038843	LAG3 (ENSCJAG00000007657) #12	CD4 (ENSCJAG00000007635) #13	GPR162 (ENSCJAG00000044634) #14	P3H3 (ENSCJAG00000007528) #15	GNB3 (ENSCJAG00000007512) #16	CDCA3 (ENSCJAG00000007508) #17	USP5 (ENSCJAG00000007431) #18	ENSCJAG00000007348 ##19	SPSB2 (ENSCJAG00000055518)	LRRC23 (ENSCJAG00000007339) #20	ENO2 (ENSCJAG00000007307) #21	ATN1 (ENSCJAG00000007276) #22	C12orf57 (ENSCJAG00000007272) #23	PTPN6 (ENSCJAG00000007188) #24	PHB2 (ENSCJAG00000007137) #25	EMG1 (ENSCJAG00000007120) #26	LPCAT3 (ENSCJAG00000007079) #27	ENSCJAG00000081262	C1S (ENSCJAG00000007042) #30	C1R (ENSCJAG00000002410) #29	C1RL (ENSCJAG00000039168) #31	RBP5 (ENSCJAG00000004871) #32	CLSTN3 (ENSCJAG00000004876) #33	PEX5 (ENSCJAG00000004968) #34	ACSM4 (ENSCJAG00000005054) #36	CD163L1 (ENSCJAG00000005091) #37	ENSCJAG00000052734
Mas night monkey	MODERN SPECIES	274	ENSANAG00000036949	ENSANAG00000034921	MLF2 (ENSANAG00000023951) #10	PTMS (ENSANAG00000025029)	LAG3 (ENSANAG00000027143) #12	CD4 (ENSANAG00000031728) #13	GPR162 (ENSANAG00000035754) #14	P3H3 (ENSANAG00000027222) #15	GNB3 (ENSANAG00000022700) #16	CDCA3 (ENSANAG00000033856) #17	USP5 (ENSANAG00000024191) #18	ENSANAG00000000053 ##19	SPSB2 (ENSANAG00000004812)	LRRC23 (ENSANAG00000031671) #20	ENO2 (ENSANAG00000035011) #21	ATN1 (ENSANAG00000036177) #22	C12orf57 (ENSANAG00000027255) #23	PTPN6 (ENSANAG00000031420) #24	PHB2 (ENSANAG00000024890) #25	ENSANAG00000022855 #26	LPCAT3 (ENSANAG00000027115) #27	C1S (ENSANAG00000037362) #30	C1R (ENSANAG00000033455) #29	C1RL (ENSANAG00000037812) #31	RBP5 (ENSANAG00000031149) #32	CLSTN3 (ENSANAG00000038406) #33	ENSANAG00000030787 #34	ACSM4 (ENSANAG00000025863) #36	CD163L1 (ENSANAG00000032423) #37	ENSANAG00000025649	DDX11 (ENSANAG00000026137)
Strepsirrhini	ANCESTRAL SPECIES	3	ENSGT00510000049460 #8	ENSGT00940000159873 #9	ENSGT00390000005023.a.f #10	ENSGT01030000234816	ENSGT01090000259985.b.b.b.a.a.a #12	ENSGT00390000001745 #13	ENSGT00390000017213.A #14	ENSGT00940000159164 #15	ENSGT01000000214413.b.a.b.a #16	ENSGT00390000017343 #17	ENSGT00940000156036 #18	ENSGT00390000013354.d.b ##19	ENSGT01030000234629.A	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242 #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000157473 #30	ENSGT00940000158621 #29	ENSGT00940000162495 #31	ENSGT00940000162526 #32	ENSGT00950000183086.a.b #33	ENSGT00940000156605 #34	ENSGT00940000157963	ENSGT00560000078483	ENSGT00940000164229 #37	ENSGT00940000155987.b
Lemuriformes	ANCESTRAL SPECIES	41	ENSGT00510000049460 #8	ENSGT00940000159873 #9	ENSGT00390000005023.a.f #10	ENSGT01030000234816	ENSGT01090000259985.b.b.b.a.a.a #12	ENSGT00390000001745 #13	ENSGT00390000017213.A #14	ENSGT00940000159164 #15	ENSGT01000000214413.b.a.b.a #16	ENSGT00390000017343 #17	ENSGT00940000156036 #18	ENSGT00390000013354.d.b ##19	ENSGT01030000234629.A	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242 #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000157473 #30	ENSGT00940000158621 #29	ENSGT00940000162495 #31	ENSGT00940000162526 #32	ENSGT00950000183086.a.b #33	ENSGT00940000156605 #34	ENSGT00560000078483	ENSGT00940000164229 #37	ENSGT00940000155987.b	ENSGT00940000160666
Lemuriformes_a	ANCESTRAL SPECIES	33	ENSGT00510000049460 #8	ENSGT00940000159873 #9	ENSGT00390000005023.a.f #10	ENSGT01030000234816	ENSGT01090000259985.b.b.b.a.a.a #12	ENSGT00390000001745 #13	ENSGT00390000017213.A #14	ENSGT00940000159164 #15	ENSGT01000000214413.b.a.b.a #16	ENSGT00390000017343 #17	ENSGT00940000156036 #18	ENSGT00390000013354.d.b ##19	ENSGT01030000234629.A	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242 #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000157473 #30	ENSGT00940000158621 #29	ENSGT00940000162495 #31	ENSGT00940000162526 #32	ENSGT00950000183086.a.b #33	ENSGT00940000156605 #34	ENSGT00560000078483	ENSGT00940000164229 #37	ENSGT00940000155987.b	ENSGT00940000160666
Coquerels sifaka	MODERN SPECIES	128	PIANP (ENSPCOG00000015290) #8	COPS7A (ENSPCOG00000023849) #9	MLF2 (ENSPCOG00000021173) #10	ENSPCOG00000019129 #11	LAG3 (ENSPCOG00000026047) #12	CD4 (ENSPCOG00000015849) #13	GPR162 (ENSPCOG00000018277) #14	P3H3 (ENSPCOG00000024751) #15	GNB3 (ENSPCOG00000028837) #16	CDCA3 (ENSPCOG00000012783) #17	USP5 (ENSPCOG00000023120) #18	ENSPCOG00000028236 ##19	SPSB2 (ENSPCOG00000023170)	LRRC23 (ENSPCOG00000026963) #20	ENO2 (ENSPCOG00000028857) #21	ATN1 (ENSPCOG00000024764) #22	C12orf57 (ENSPCOG00000018698) #23	PTPN6 (ENSPCOG00000018515) #24	ENSPCOG00000025860 #25	EMG1 (ENSPCOG00000028560) #26	LPCAT3 (ENSPCOG00000021530) #27	C1S (ENSPCOG00000018942) #30	C1R (ENSPCOG00000021412) #29	C1RL (ENSPCOG00000025155) #31	RBP5 (ENSPCOG00000024308) #32	CLSTN3 (ENSPCOG00000022319) #33	PEX5 (ENSPCOG00000017563) #34	CD163L1 (ENSPCOG00000001924) #37	CD163 (ENSPCOG00000015026)	CLEC4E (ENSPCOG00000017330)	CLEC4D (ENSPCOG00000023414)
Greater bamboo lemur	MODERN SPECIES	605	COPS7A (ENSPSMG00000016330) #9	MLF2 (ENSPSMG00000016257) #10	PTMS (ENSPSMG00000016228)	LAG3 (ENSPSMG00000016218) #12	CD4 (ENSPSMG00000016207) #13	GPR162 (ENSPSMG00000016191) #14	P3H3 (ENSPSMG00000016162) #15	GNB3 (ENSPSMG00000016055) #16	CDCA3 (ENSPSMG00000015938) #17	USP5 (ENSPSMG00000015879) #18	TPI1 (ENSPSMG00000015802) ##19	SPSB2 (ENSPSMG00000015768)	LRRC23 (ENSPSMG00000015747) #20	ENO2 (ENSPSMG00000015423) #21	C12orf57 (ENSPSMG00000015194) #23	ATN1 (ENSPSMG00000015134) #22	PTPN6 (ENSPSMG00000015028) #24	PHB2 (ENSPSMG00000014912) #25	EMG1 (ENSPSMG00000014825) #26	LPCAT3 (ENSPSMG00000014786) #27	C1S (ENSPSMG00000014739) #30	C1R (ENSPSMG00000014674) #29	C1RL (ENSPSMG00000014564) #31	RBP5 (ENSPSMG00000014560) #32	CLSTN3 (ENSPSMG00000014550) #33	PEX5 (ENSPSMG00000014313) #34
Mouse lemur	MODERN SPECIES	29	PIANP (ENSMICG00000026350) #8	COPS7A (ENSMICG00000013661) #9	MLF2 (ENSMICG00000048017) #10	PTMS (ENSMICG00000036709)	LAG3 (ENSMICG00000044236) #12	CD4 (ENSMICG00000027649) #13	GPR162 (ENSMICG00000001963) #14	P3H3 (ENSMICG00000042131) #15	GNB3 (ENSMICG00000015148) #16	CDCA3 (ENSMICG00000001744) #17	USP5 (ENSMICG00000001749) #18	SPSB2 (ENSMICG00000001765)	ENSMICG00000030580 ##19	LRRC23 (ENSMICG00000001768) #20	ENO2 (ENSMICG00000027396) #21	ATN1 (ENSMICG00000032239) #22	C12orf57 (ENSMICG00000043340) #23	PTPN6 (ENSMICG00000001782) #24	PHB2 (ENSMICG00000028867) #25	EMG1 (ENSMICG00000001790) #26	LPCAT3 (ENSMICG00000001793) #27	C1S (ENSMICG00000032049) #30	C1R (ENSMICG00000002784) #29	C1RL (ENSMICG00000033633) #31	RBP5 (ENSMICG00000044689) #32	CLSTN3 (ENSMICG00000009538) #33	ENSMICG00000009549 #34	ENSMICG00000046864	CD163L1 (ENSMICG00000007470) #37	CD163 (ENSMICG00000005428)	CLEC4E (ENSMICG00000033022)
Bushbaby	MODERN SPECIES	219	PIANP (ENSOGAG00000034013) #8	COPS7A (ENSOGAG00000005973) #9	ENSOGAG00000005976 #10	ACRBP (ENSOGAG00000010040)	LAG3 (ENSOGAG00000033914) #12	CD4 (ENSOGAG00000014692) #13	GPR162 (ENSOGAG00000024660) #14	P3H3 (ENSOGAG00000003025) #15	GNB3 (ENSOGAG00000027119) #16	CDCA3 (ENSOGAG00000032007) #17	USP5 (ENSOGAG00000010847) #18	ENSOGAG00000031254 ##19	SPSB2 (ENSOGAG00000028292)	LRRC23 (ENSOGAG00000010909) #20	ENO2 (ENSOGAG00000010912) #21	ATN1 (ENSOGAG00000006970) #22	C12orf57 (ENSOGAG00000006974) #23	PTPN6 (ENSOGAG00000010915) #24	PHB2 (ENSOGAG00000030553) #25	EMG1 (ENSOGAG00000006975) #26	LPCAT3 (ENSOGAG00000006978) #27	C1S (ENSOGAG00000006982) #30	C1R (ENSOGAG00000011095) #29	C1RL (ENSOGAG00000010755) #31	RBP5 (ENSOGAG00000010756) #32	CLSTN3 (ENSOGAG00000025517) #33	PEX5 (ENSOGAG00000010757) #34	ENSOGAG00000028448	CD163 (ENSOGAG00000014466)	CLEC4E (ENSOGAG00000000965)	CLEC4D (ENSOGAG00000009259)
Euarchontoglires_A	ANCESTRAL SPECIES	5	ENSGT00510000049460 #8	ENSGT00940000159873 #9	ENSGT00390000005023.a #10	ENSGT01030000234816	ENSGT01090000259985.b.b.b.a.a.a #12	ENSGT00390000001745 #13	ENSGT00390000017213.A #14	ENSGT00940000159164 #15	ENSGT01000000214413.b.a.b.a #16	ENSGT00390000017343 #17	ENSGT00940000156036 #18	ENSGT00390000013354.d.b ##19	ENSGT01030000234629.A	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242 #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000157473 #30	ENSGT00940000158621 #29	ENSGT00940000162495 #31	ENSGT00940000162526 #32	ENSGT00950000183086.a.b #33	ENSGT00940000156605 #34	ENSGT00940000157963	ENSGT00560000078483	ENSGT00940000155987.b	ENSGT00940000160666
Glires	ANCESTRAL SPECIES	4	ENSGT00510000049460 #8	ENSGT00940000159873 #9	ENSGT00390000005023.a #10	ENSGT01030000234816	ENSGT01090000259985.b.b.b.a.a.a #12	ENSGT00390000001745 #13	ENSGT00390000017213.A #14	ENSGT00940000159164 #15	ENSGT01000000214413.b.a.b.a #16	ENSGT00390000017343 #17	ENSGT00940000156036 #18	ENSGT00390000013354.d.b ##19	ENSGT01030000234629.A	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242 #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000157473 #30	ENSGT00940000158621 #29	ENSGT00940000162495 #31	ENSGT00940000162526 #32	ENSGT00950000183086.a.b #33	ENSGT00940000156605 #34	ENSGT00940000157963	ENSGT00560000078483	ENSGT00940000155987.b	ENSGT00940000160666
Rodentia	ANCESTRAL SPECIES	5	ENSGT00510000049460 #8	ENSGT00940000159873 #9	ENSGT00390000005023.a #10	ENSGT01030000234816	ENSGT01090000259985.b.b.b.a.a.a #12	ENSGT00390000001745 #13	ENSGT00390000017213.A #14	ENSGT00940000159164 #15	ENSGT01000000214413.b.a.b.a #16	ENSGT00390000017343 #17	ENSGT00940000156036 #18	ENSGT00390000013354.d.b ##19	ENSGT01030000234629.A	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242 #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000157473 #30	ENSGT00940000158621 #29	ENSGT00940000162495 #31	ENSGT00940000162526 #32	ENSGT00950000183086.a.b #33	ENSGT00940000156605 #34	ENSGT00940000157963	ENSGT00560000078483	ENSGT00940000155987.b	ENSGT00940000163606
Rodentia_B	ANCESTRAL SPECIES	35	ENSGT00510000049460 #8	ENSGT00940000159873 #9	ENSGT00390000005023.a #10	ENSGT01030000234816	ENSGT01090000259985.b.b.b.a.a.a #12	ENSGT00390000001745 #13	ENSGT00390000017213.A #14	ENSGT00940000159164 #15	ENSGT01000000214413.b.a.b.a #16	ENSGT00390000017343 #17	ENSGT00940000156036 #18	ENSGT00390000013354.d.b ##19	ENSGT01030000234629.A	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242 #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000157473 #30	ENSGT00940000158621 #29	ENSGT00940000162495 #31	ENSGT00940000162526 #32	ENSGT00950000183086.a.b #33	ENSGT00940000156605 #34	ENSGT00560000078483	ENSGT00940000155987.b	ENSGT00940000163606	ENSGT00940000160666
Myomorpha	ANCESTRAL SPECIES	15	ENSGT00510000049460 #8	ENSGT00940000159873 #9	ENSGT00390000005023.a #10	ENSGT01030000234816	ENSGT01090000259985.b.b.b.a.a.a #12	ENSGT00390000001745 #13	ENSGT00390000017213.A #14	ENSGT00940000159164 #15	ENSGT01000000214413.b.a.b.a #16	ENSGT00390000017343 #17	ENSGT00940000156036 #18	ENSGT00390000013354.d.b ##19	ENSGT01030000234629.A	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242 #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000157473 #30	ENSGT00940000158621 #29	ENSGT00940000162495 #31	ENSGT00940000162526 #32	ENSGT00950000183086.a.b #33	ENSGT00940000156605 #34	ENSGT00560000078483	ENSGT00940000155987.b	ENSGT00940000163606	ENSGT00940000160666
Muroidea	ANCESTRAL SPECIES	24	ENSGT00510000049460 #8	ENSGT00940000159873 #9	ENSGT00390000005023.a #10	ENSGT01030000234816	ENSGT01090000259985.b.b.b.a.a.a #12	ENSGT00390000001745 #13	ENSGT00390000017213.A #14	ENSGT00940000159164 #15	ENSGT01000000214413.b.a.b.a #16	ENSGT00390000017343 #17	ENSGT00940000156036 #18	ENSGT00390000013354.d.b ##19	ENSGT01030000234629.A	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242 #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000157473 #30	ENSGT00940000158621 #29	ENSGT00940000162495 #31	ENSGT00940000162526 #32	ENSGT00950000183086.a.b #33	ENSGT00940000156605 #34	ENSGT00560000078483	ENSGT00940000155987.b	ENSGT00940000163606	ENSGT00940000160666
Muroidea_A	ANCESTRAL SPECIES	4	ENSGT00510000049460 #8	ENSGT00940000159873 #9	ENSGT00390000005023.a #10	ENSGT01100000264105	ENSGT01090000259985.b.b.b.a.a.a #12	ENSGT00390000001745 #13	ENSGT00390000017213.A #14	ENSGT00940000159164 #15	ENSGT01000000214413.b.a.b.a #16	ENSGT00390000017343 #17	ENSGT00940000156036 #18	ENSGT00390000013354.d.b ##19	ENSGT01030000234629.A	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242 #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000157473 #30	ENSGT00940000158621 #29	ENSGT00940000162495 #31	ENSGT00950000183086.a.b #33	ENSGT00940000156605 #34	ENSGT00560000078483	ENSGT00940000155987.b	ENSGT00940000163606	ENSGT00940000160666	ENSGT00940000162400
Cricetidae	ANCESTRAL SPECIES	3	ENSGT00510000049460 #8	ENSGT00940000159873 #9	ENSGT00390000005023.a #10	ENSGT01100000264105	ENSGT01090000259985.b.b.b.a.a.a #12	ENSGT00390000001745 #13	ENSGT00390000017213.A #14	ENSGT00940000159164 #15	ENSGT01000000214413.b.a.b.a #16	ENSGT00390000017343 #17	ENSGT00940000156036 #18	ENSGT00390000013354.d.b ##19	ENSGT01030000234629.A	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242.m #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000157473 #30	ENSGT00940000158621 #29	ENSGT00940000162495 #31	ENSGT00950000183086.a.b #33	ENSGT00940000156605 #34	ENSGT00560000078483	ENSGT00940000155987.b	ENSGT00940000163606	ENSGT00940000160666	ENSGT00940000162400
Cricetinae	ANCESTRAL SPECIES	8	ENSGT00510000049460 #8	ENSGT00940000159873 #9	ENSGT00390000005023.a #10	ENSGT01100000264105	ENSGT01090000259985.b.b.b.a.a.a #12	ENSGT00390000001745 #13	ENSGT00390000017213.A #14	ENSGT00940000159164 #15	ENSGT01000000214413.b.a.b.a #16	ENSGT00390000017343 #17	ENSGT00940000156036 #18	ENSGT00390000013354.d.b ##19	ENSGT01030000234629.A	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242.m #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000157473 #30	ENSGT00940000158621 #29	ENSGT00940000162495 #31	ENSGT00950000183086.a.b #33	ENSGT00940000156605 #34	ENSGT00560000078483	ENSGT00940000155987.b	ENSGT00940000163606	ENSGT00940000160666	ENSGT00940000162400
Chinese hamster chok1gshd	MODERN SPECIES	289	Pianp (ENSCGRG00001015100) #8	Cops7a (ENSCGRG00001014256) #9	Mlf2 (ENSCGRG00001010430) #10	Ptms (ENSCGRG00001001584)	Lag3 (ENSCGRG00001022458) #12	Cd4 (ENSCGRG00001013261) #13	Gpr162 (ENSCGRG00001003162) #14	P3h3 (ENSCGRG00001000528) #15	Gnb3 (ENSCGRG00001016439) #16	Cdca3 (ENSCGRG00001013882) #17	ENSCGRG00001003405 #18	ENSCGRG00001023512 ##19	Spsb2 (ENSCGRG00001015446)	Lrrc23 (ENSCGRG00001014615) #20	Eno2 (ENSCGRG00001005536) #21	Atn1 (ENSCGRG00001002091) #22	Grcc10 (ENSCGRG00001000772) #23	Ptpn6 (ENSCGRG00001000777) #24	Phb2 (ENSCGRG00001010980) #25	Emg1 (ENSCGRG00001018228) #26	Lpcat3 (ENSCGRG00001017783) #27	ENSCGRG00001018041 #30	ENSCGRG00001011539 #29	C1rl (ENSCGRG00001000458) #31	Clstn3 (ENSCGRG00001014128) #33	PEX5 (ENSCGRG00001020537) #34	ENSCGRG00001018106	Cd163 (ENSCGRG00001013534)	ENSCGRG00001022487	Clec4e (ENSCGRG00001020170)	Clec4d (ENSCGRG00001015907)
Golden Hamster	MODERN SPECIES	622	Pianp (ENSMAUG00000020708) #8	Cops7a (ENSMAUG00000014756) #9	Mlf2 (ENSMAUG00000021106) #10	Ptms (ENSMAUG00000014936)	Lag3 (ENSMAUG00000010793) #12	Cd4 (ENSMAUG00000008564) #13	Gpr162 (ENSMAUG00000015921) #14	P3h3 (ENSMAUG00000019245) #15	Gnb3 (ENSMAUG00000009606) #16	Cdca3 (ENSMAUG00000022142) #17	Usp5 (ENSMAUG00000012318) #18	ENSMAUG00000006567 ##19	Spsb2 (ENSMAUG00000021689)	Lrrc23 (ENSMAUG00000016637) #20	Eno2 (ENSMAUG00000015278) #21	Atn1 (ENSMAUG00000021780) #22	ENSMAUG00000013193 #24	Grcc10 (ENSMAUG00000006718) #23	Phb2 (ENSMAUG00000015418) #25	Emg1 (ENSMAUG00000011093) #26	Lpcat3 (ENSMAUG00000001241) #27	C1s (ENSMAUG00000017562) #30	ENSMAUG00000001230 #29	C1rl (ENSMAUG00000007953) #31	Clstn3 (ENSMAUG00000007828) #33	Pex5 (ENSMAUG00000012548) #34	ENSMAUG00000017972	Cd163 (ENSMAUG00000000759)	Clec4e (ENSMAUG00000018571)	Clec4d (ENSMAUG00000004749)	Clec4n (ENSMAUG00000016308)
Cricetidae_B	ANCESTRAL SPECIES	14	ENSGT00510000049460 #8	ENSGT00940000159873 #9	ENSGT00390000005023.a #10	ENSGT01100000264105	ENSGT01090000259985.b.b.b.a.a.a #12	ENSGT00390000001745 #13	ENSGT00390000017213.A #14	ENSGT00940000159164 #15	ENSGT01000000214413.b.a.b.a #16	ENSGT00390000017343 #17	ENSGT00940000156036 #18	ENSGT00390000013354.d.b ##19	ENSGT01030000234629.A	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242.m #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000157473 #30	ENSGT00940000158621 #29	ENSGT00940000162495 #31	ENSGT00950000183086.a.b #33	ENSGT00940000156605 #34	ENSGT00560000078483	ENSGT00940000155987.b	ENSGT00940000163606	ENSGT00940000160666	ENSGT00940000162400
Northern American deer mouse	MODERN SPECIES	16	Pianp (ENSPEMG00000013120) #8	Cops7a (ENSPEMG00000002860) #9	Mlf2 (ENSPEMG00000013094) #10	ENSPEMG00000016593	Lag3 (ENSPEMG00000018743) #12	ENSPEMG00000024347 #13	Gpr162 (ENSPEMG00000017095) #14	P3h3 (ENSPEMG00000011450) #15	Gnb3 (ENSPEMG00000016368) #16	Cdca3 (ENSPEMG00000016358) #17	Usp5 (ENSPEMG00000015362) #18	Tpi1 (ENSPEMG00000015666) ##19	Spsb2 (ENSPEMG00000002397)	Lrrc23 (ENSPEMG00000018958) #20	Eno2 (ENSPEMG00000016439) #21	Atn1 (ENSPEMG00000019091) #22	ENSPEMG00000019030 #23	Ptpn6 (ENSPEMG00000026571) #24	Phb2 (ENSPEMG00000018214) #25	ENSPEMG00000010244 #26	Lpcat3 (ENSPEMG00000008421) #27	ENSPEMG00000003953 #30	ENSPEMG00000016968 #29	C1rl (ENSPEMG00000024503) #31	Clstn3 (ENSPEMG00000012312) #33	Pex5 (ENSPEMG00000011167) #34	ENSPEMG00000013047	Cd163 (ENSPEMG00000023074)	ENSPEMG00000021552	Clec4e (ENSPEMG00000022603)	Clec4d (ENSPEMG00000021801)
Prairie vole	MODERN SPECIES	84	Pianp (ENSMOCG00000012046) #8	Cops7a (ENSMOCG00000018184) #9	ENSMOCG00000000196 #10	Ptms (ENSMOCG00000011411)	Lag3 (ENSMOCG00000016856) #12	Cd4 (ENSMOCG00000007576) #13	Gpr162 (ENSMOCG00000018395) #14	P3h3 (ENSMOCG00000014085) #15	Gnb3 (ENSMOCG00000019447) #16	Cdca3 (ENSMOCG00000008232) #17	Usp5 (ENSMOCG00000002382) #18	ENSMOCG00000020047 ##19	Spsb2 (ENSMOCG00000018093)	Lrrc23 (ENSMOCG00000016717) #20	Eno2 (ENSMOCG00000016135) #21	Atn1 (ENSMOCG00000016557) #22	Grcc10 (ENSMOCG00000009351) #23	Ptpn6 (ENSMOCG00000017778) #24	Phb2 (ENSMOCG00000013484) #25	Emg1 (ENSMOCG00000022570) #26	Lpcat3 (ENSMOCG00000021701) #27	ENSMOCG00000019687 #30	ENSMOCG00000020420 #29	C1rl (ENSMOCG00000011460) #31	Clstn3 (ENSMOCG00000014748) #33	ENSMOCG00000000391	Pex5 (ENSMOCG00000017492) #34	ENSMOCG00000002666	Cd163 (ENSMOCG00000016909)	Clec4e (ENSMOCG00000000786)	Clec4d (ENSMOCG00000010391)
Murinae	ANCESTRAL SPECIES	4	ENSGT00510000049460 #8	ENSGT00940000159873 #9	ENSGT00390000005023.a #10	ENSGT01100000264105	ENSGT01090000259985.b.b.b.a.a.a #12	ENSGT00390000001745 #13	ENSGT00390000017213.A #14	ENSGT00940000159164 #15	ENSGT01000000214413.b.a.b.a #16	ENSGT00390000017343 #17	ENSGT00940000156036 #18	ENSGT00390000013354.d.b ##19	ENSGT01030000234629.A	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242 #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000157473 #30	ENSGT00940000158621 #29	ENSGT00940000162495 #31	ENSGT00950000183086.a.b #33	ENSGT00940000156605 #34	ENSGT00560000078483	ENSGT00940000155987.b	ENSGT00940000160666	ENSGT00940000162400	ENSGT00940000162938
Mus	ANCESTRAL SPECIES	12	ENSGT00510000049460 #8	ENSGT00940000159873 #9	ENSGT00390000005023.a #10	ENSGT01100000264105	ENSGT01090000259985.b.b.b.a.a.a #12	ENSGT00390000001745 #13	ENSGT00390000017213.A #14	ENSGT00940000159164 #15	ENSGT01000000214413.b.a.b.a #16	ENSGT00390000017343 #17	ENSGT00940000156036 #18	ENSGT00390000013354.d.b ##19	ENSGT01030000234629.A	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242 #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000157473 #30	ENSGT00940000158621 #29	ENSGT00940000162495 #31	ENSGT00950000183086.a.b #33	ENSGT00940000156605 #34	ENSGT00560000078483	ENSGT00940000155987.b	ENSGT00940000160666	ENSGT00940000162400	ENSGT00940000162938
Mus_A	ANCESTRAL SPECIES	7	ENSGT00510000049460 #8	ENSGT00940000159873 #9	ENSGT00390000005023.a #10	ENSGT01100000264105	ENSGT01090000259985.b.b.b.a.a.a #12	ENSGT00390000001745 #13	ENSGT00390000017213.A #14	ENSGT00940000159164 #15	ENSGT01000000214413.b.a.b.a #16	ENSGT00390000017343 #17	ENSGT00940000156036 #18	ENSGT00390000013354.d.b ##19	ENSGT01030000234629.A	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242 #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000157473 #30	ENSGT00940000158621 #29	ENSGT00940000162495 #31	ENSGT00950000183086.a.b #33	ENSGT00940000156605 #34	ENSGT00560000078483	ENSGT00940000155987.b.v	ENSGT00940000160666	ENSGT00940000162400	ENSGT00940000162938
Mus_B	ANCESTRAL SPECIES	15	ENSGT00510000049460 #8	ENSGT00940000159873 #9	ENSGT00390000005023.a #10	ENSGT01100000264105	ENSGT01090000259985.b.b.b.a.a.a #12	ENSGT00390000001745 #13	ENSGT00390000017213.A #14	ENSGT00940000159164 #15	ENSGT01000000214413.b.a.b.a #16	ENSGT00390000017343.g #17	ENSGT00940000156036 #18	ENSGT00390000013354.d.b ##19	ENSGT01030000234629.A	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242 #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000157473.i #30	ENSGT00940000158621.k.b #29	ENSGT00940000157473.j #30	ENSGT00940000158621.k.a #29	ENSGT00940000162495 #31	ENSGT00950000183086.a.b #33	ENSGT00940000156605 #34	ENSGT00560000078483	ENSGT00940000155987.b.v	ENSGT00940000163606.a.b.a.b
Mus_C	ANCESTRAL SPECIES	18	ENSGT00510000049460 #8	ENSGT00940000159873 #9	ENSGT00940000168330	ENSGT01100000264105	ENSGT01090000259985.b.b.b.a.a.a #12	ENSGT00390000001745 #13	ENSGT00390000017213.A #14	ENSGT00940000159164 #15	ENSGT01000000214413.b.a.b.a #16	ENSGT00390000017343.g #17	ENSGT00940000156036 #18	ENSGT00390000013354.d.b ##19	ENSGT01030000234629.A	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242 #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000158621.l #29	ENSGT00940000162495 #31	ENSGT00950000183086.a.b #33	ENSGT00940000156605 #34	ENSGT00560000078483	ENSGT00940000155987.b.v	ENSGT00940000163606.a.b.a.b	ENSGT00940000163606.a.b.a.a.a	ENSGT00940000163606.a.a	ENSGT00940000163606.a.b.b.b
spretus	DUPLICATION
spretus	MODERN SPECIES	15	Pianp (MGP_SPRETEiJ_G0029906) #8	Cops7a (MGP_SPRETEiJ_G0029905) #9	MGP_SPRETEiJ_G0029904	MGP_SPRETEiJ_G0029903	Lag3 (MGP_SPRETEiJ_G0029902) #12	Cd4 (MGP_SPRETEiJ_G0029901) #13	Gpr162 (MGP_SPRETEiJ_G0029900) #14	P3h3 (MGP_SPRETEiJ_G0029899) #15	Gnb3 (MGP_SPRETEiJ_G0029898) #16	Cdca3 (MGP_SPRETEiJ_G0029897) #17	Usp5 (MGP_SPRETEiJ_G0029896) #18	MGP_SPRETEiJ_G0029895 ##19	Spsb2 (MGP_SPRETEiJ_G0029894)	Lrrc23 (MGP_SPRETEiJ_G0029893) #20	Eno2 (MGP_SPRETEiJ_G0029892) #21	MGP_SPRETEiJ_G0029891 #22	MGP_SPRETEiJ_G0029890 #22	Grcc10 (MGP_SPRETEiJ_G0029889) #23	Ptpn6 (MGP_SPRETEiJ_G0029888) #24	Phb2 (MGP_SPRETEiJ_G0029887) #25	Emg1 (MGP_SPRETEiJ_G0029886) #26	Lpcat3 (MGP_SPRETEiJ_G0029885) #27	MGP_SPRETEiJ_G0029883 #29	C1rl (MGP_SPRETEiJ_G0029882) #31	Clstn3 (MGP_SPRETEiJ_G0029881) #33	Pex5 (MGP_SPRETEiJ_G0029880) #34	MGP_SPRETEiJ_G0029879	Cd163 (MGP_SPRETEiJ_G0029878)	MGP_SPRETEiJ_G0029877	MGP_SPRETEiJ_G0029876	MGP_SPRETEiJ_G0029875
spretus	MODERN SPECIES	15	Cops7a (MGP_SPRETEiJ_G0029905) #9	MGP_SPRETEiJ_G0029904	MGP_SPRETEiJ_G0029903	Lag3 (MGP_SPRETEiJ_G0029902) #12	Cd4 (MGP_SPRETEiJ_G0029901) #13	Gpr162 (MGP_SPRETEiJ_G0029900) #14	P3h3 (MGP_SPRETEiJ_G0029899) #15	Gnb3 (MGP_SPRETEiJ_G0029898) #16	Cdca3 (MGP_SPRETEiJ_G0029897) #17	Usp5 (MGP_SPRETEiJ_G0029896) #18	MGP_SPRETEiJ_G0029895 ##19	Spsb2 (MGP_SPRETEiJ_G0029894)	Lrrc23 (MGP_SPRETEiJ_G0029893) #20	Eno2 (MGP_SPRETEiJ_G0029892) #21	MGP_SPRETEiJ_G0029891 #22	MGP_SPRETEiJ_G0029890 #22	Grcc10 (MGP_SPRETEiJ_G0029889) #23	Ptpn6 (MGP_SPRETEiJ_G0029888) #24	Phb2 (MGP_SPRETEiJ_G0029887) #25	Emg1 (MGP_SPRETEiJ_G0029886) #26	Lpcat3 (MGP_SPRETEiJ_G0029885) #27	MGP_SPRETEiJ_G0029883 #29	C1rl (MGP_SPRETEiJ_G0029882) #31	Clstn3 (MGP_SPRETEiJ_G0029881) #33	Pex5 (MGP_SPRETEiJ_G0029880) #34	MGP_SPRETEiJ_G0029879	Cd163 (MGP_SPRETEiJ_G0029878)	MGP_SPRETEiJ_G0029877	MGP_SPRETEiJ_G0029876	MGP_SPRETEiJ_G0029875	MGP_SPRETEiJ_G0029874
Mouse	MODERN SPECIES	15	Pianp (ENSMUSG00000030329) #8	Cops7a (ENSMUSG00000030127) #9	Mlf2 (ENSMUSG00000030120) #10	Ptms (ENSMUSG00000030122)	Lag3 (ENSMUSG00000030124) #12	Cd4 (ENSMUSG00000023274) #13	Gpr162 (ENSMUSG00000038390) #14	P3h3 (ENSMUSG00000023191) #15	Gnb3 (ENSMUSG00000023439) #16	Cdca3 (ENSMUSG00000023505) #17	Usp5 (ENSMUSG00000038429) #18	Tpi1 (ENSMUSG00000023456) ##19	Spsb2 (ENSMUSG00000038451)	Lrrc23 (ENSMUSG00000030125) #20	Eno2 (ENSMUSG00000004267) #21	Atn1 (ENSMUSG00000004263) #22	Grcc10 (ENSMUSG00000072772) #23	Ptpn6 (ENSMUSG00000004266) #24	Phb2 (ENSMUSG00000004264) #25	Emg1 (ENSMUSG00000004268) #26	Lpcat3 (ENSMUSG00000004270) #27	C1s2 (ENSMUSG00000079343) #30	C1rb (ENSMUSG00000098470) #29	C1s1 (ENSMUSG00000038521) #30	C1ra (ENSMUSG00000055172) #29	C1rl (ENSMUSG00000038527) #31	Clstn3 (ENSMUSG00000008153) #33	Pex5 (ENSMUSG00000005069) #34	Cd163 (ENSMUSG00000008845)	Vmn2r27 (ENSMUSG00000072778)	Vmn2r26 (ENSMUSG00000096630)
Ryukyu mouse	DUPLICATION
Ryukyu mouse	MODERN SPECIES	15	Pianp (MGP_CAROLIEiJ_G0028864) #8	Cops7a (MGP_CAROLIEiJ_G0028863) #9	MGP_CAROLIEiJ_G0028862	MGP_CAROLIEiJ_G0028861	MGP_CAROLIEiJ_G0028860 #12	Cd4 (MGP_CAROLIEiJ_G0028859) #13	Gpr162 (MGP_CAROLIEiJ_G0028858) #14	Gnb3 (MGP_CAROLIEiJ_G0028856) #16	Cdca3 (MGP_CAROLIEiJ_G0028855) #17	Usp5 (MGP_CAROLIEiJ_G0028854) #18	Tpi1 (MGP_CAROLIEiJ_G0028853) ##19	Spsb2 (MGP_CAROLIEiJ_G0028852)	Lrrc23 (MGP_CAROLIEiJ_G0028851) #20	Eno2 (MGP_CAROLIEiJ_G0028850) #21	MGP_CAROLIEiJ_G0028849 #22	MGP_CAROLIEiJ_G0028848 #22	Grcc10 (MGP_CAROLIEiJ_G0028847) #23	MGP_CAROLIEiJ_G0028846	Phb2 (MGP_CAROLIEiJ_G0028845) #25	Emg1 (MGP_CAROLIEiJ_G0028844) #26	Lpcat3 (MGP_CAROLIEiJ_G0028843) #27	MGP_CAROLIEiJ_G0028842 #33	MGP_CAROLIEiJ_G0028840	Cd163 (MGP_CAROLIEiJ_G0028839)	MGP_CAROLIEiJ_G0028838	Clec4d (MGP_CAROLIEiJ_G0028837)	MGP_CAROLIEiJ_G0028836	MGP_CAROLIEiJ_G0028835	MGP_CAROLIEiJ_G0028834	Clec4a2 (MGP_CAROLIEiJ_G0028833)	Clec4a4 (MGP_CAROLIEiJ_G0028832)
Ryukyu mouse	MODERN SPECIES	15	Zfp384 (MGP_CAROLIEiJ_G0028865) #7	Pianp (MGP_CAROLIEiJ_G0028864) #8	Cops7a (MGP_CAROLIEiJ_G0028863) #9	MGP_CAROLIEiJ_G0028862	MGP_CAROLIEiJ_G0028861	MGP_CAROLIEiJ_G0028860 #12	Cd4 (MGP_CAROLIEiJ_G0028859) #13	Gpr162 (MGP_CAROLIEiJ_G0028858) #14	Gnb3 (MGP_CAROLIEiJ_G0028856) #16	Cdca3 (MGP_CAROLIEiJ_G0028855) #17	Usp5 (MGP_CAROLIEiJ_G0028854) #18	Tpi1 (MGP_CAROLIEiJ_G0028853) ##19	Spsb2 (MGP_CAROLIEiJ_G0028852)	Lrrc23 (MGP_CAROLIEiJ_G0028851) #20	Eno2 (MGP_CAROLIEiJ_G0028850) #21	MGP_CAROLIEiJ_G0028849 #22	MGP_CAROLIEiJ_G0028848 #22	Grcc10 (MGP_CAROLIEiJ_G0028847) #23	MGP_CAROLIEiJ_G0028846	Phb2 (MGP_CAROLIEiJ_G0028845) #25	Emg1 (MGP_CAROLIEiJ_G0028844) #26	Lpcat3 (MGP_CAROLIEiJ_G0028843) #27	MGP_CAROLIEiJ_G0028842 #33	MGP_CAROLIEiJ_G0028840	Cd163 (MGP_CAROLIEiJ_G0028839)	MGP_CAROLIEiJ_G0028838	Clec4d (MGP_CAROLIEiJ_G0028837)	MGP_CAROLIEiJ_G0028836	MGP_CAROLIEiJ_G0028835	MGP_CAROLIEiJ_G0028834	Clec4a2 (MGP_CAROLIEiJ_G0028833)
Shrew mouse	MODERN SPECIES	11	Pianp (MGP_PahariEiJ_G0022624) #8	Cops7a (MGP_PahariEiJ_G0022623) #9	MGP_PahariEiJ_G0022622	MGP_PahariEiJ_G0022621	Lag3 (MGP_PahariEiJ_G0022620) #12	MGP_PahariEiJ_G0022619 #13	Gpr162 (MGP_PahariEiJ_G0022618) #14	P3h3 (MGP_PahariEiJ_G0022617) #15	Gnb3 (MGP_PahariEiJ_G0022616) #16	Cdca3 (MGP_PahariEiJ_G0022615) #17	Usp5 (MGP_PahariEiJ_G0022614) #18	Tpi1 (MGP_PahariEiJ_G0022613) ##19	Spsb2 (MGP_PahariEiJ_G0022612)	Lrrc23 (MGP_PahariEiJ_G0022611) #20	Eno2 (MGP_PahariEiJ_G0022610) #21	Atn1 (MGP_PahariEiJ_G0022609) #22	Grcc10 (MGP_PahariEiJ_G0022608) #23	Ptpn6 (MGP_PahariEiJ_G0022607) #24	Phb2 (MGP_PahariEiJ_G0022606) #25	Emg1 (MGP_PahariEiJ_G0022605) #26	Lpcat3 (MGP_PahariEiJ_G0022604) #27	MGP_PahariEiJ_G0022603 #29	MGP_PahariEiJ_G0022602 #29	C1rl (MGP_PahariEiJ_G0022601) #31	Clstn3 (MGP_PahariEiJ_G0022600) #33	Pex5 (MGP_PahariEiJ_G0022599) #34	MGP_PahariEiJ_G0022598	Cd163 (MGP_PahariEiJ_G0022597)	MGP_PahariEiJ_G0022596	MGP_PahariEiJ_G0022595	MGP_PahariEiJ_G0022594
Rat	MODERN SPECIES	14	Cops7a (ENSRNOG00000016778) #9	Mlf2 (ENSRNOG00000016589) #10	AC115420.4 (ENSRNOG00000060308)	Ptms (ENSRNOG00000060098)	Lag3 (ENSRNOG00000021334) #12	ENSRNOG00000071219 #13	Gpr162 (ENSRNOG00000016143) #14	P3h3 (ENSRNOG00000071218) #15	Gnb3 (ENSRNOG00000015541) #16	Cdca3 (ENSRNOG00000015529) #17	Usp5 (ENSRNOG00000015409) #18	Tpi1 (ENSRNOG00000015290) ##19	Spsb2 (ENSRNOG00000015125)	Lrrc23 (ENSRNOG00000026309) #20	Eno2 (ENSRNOG00000013141) #21	Atn1 (ENSRNOG00000060594) #22	Ptpn6 (ENSRNOG00000014294) #24	Phb2 (ENSRNOG00000012999) #25	Emg1 (ENSRNOG00000012828) #26	Lpcat3 (ENSRNOG00000012269) #27	C1s (ENSRNOG00000011971) #30	C1r (ENSRNOG00000011796) #29	C1rl (ENSRNOG00000011718) #31	Zfp42l (ENSRNOG00000063726)	Clstn3 (ENSRNOG00000011156) #33	Pex5 (ENSRNOG00000049203) #34	RGD1307916 (ENSRNOG00000042494)	Cd163 (ENSRNOG00000010253)	Vom2r52 (ENSRNOG00000068988)	Vom2r51 (ENSRNOG00000066511)	Vom2r50 (ENSRNOG00000070578)
Upper Galilee mountains blind mole rat	MODERN SPECIES	1885	Cops7a (ENSNGAG00000022873) #9	Mlf2 (ENSNGAG00000016666) #10	ENSNGAG00000021065	Lag3 (ENSNGAG00000009790) #12	ENSNGAG00000022963 #13	Gpr162 (ENSNGAG00000002840) #14	P3h3 (ENSNGAG00000015076) #15	Gnb3 (ENSNGAG00000023501) #16	Cdca3 (ENSNGAG00000016633) #17	Usp5 (ENSNGAG00000011453) #18	Tpi1 (ENSNGAG00000017109) ##19	Spsb2 (ENSNGAG00000008201)	ENSNGAG00000019265	Lrrc23 (ENSNGAG00000023434) #20	Eno2 (ENSNGAG00000019726) #21	Atn1 (ENSNGAG00000003346) #22	Grcc10 (ENSNGAG00000015624) #23	Ptpn6 (ENSNGAG00000006668) #24	ENSNGAG00000023489 #25	Emg1 (ENSNGAG00000022592) #26	Lpcat3 (ENSNGAG00000019456) #27	ENSNGAG00000019975 #30	ENSNGAG00000021958 #29	C1rl (ENSNGAG00000023384) #31	ENSNGAG00000018451 #32	Clstn3 (ENSNGAG00000022664) #33	Pex5 (ENSNGAG00000022852) #34	ENSNGAG00000023425	ENSNGAG00000023205	Cd163 (ENSNGAG00000004434)	Clec4e (ENSNGAG00000010318)
Lesser Egyptian jerboa	MODERN SPECIES	158	Pianp (ENSJJAG00000000549) #8	Cops7a (ENSJJAG00000010387) #9	Mlf2 (ENSJJAG00000009196) #10	ENSJJAG00000008935	Lag3 (ENSJJAG00000007735) #12	Cd4 (ENSJJAG00000006130) #13	Gpr162 (ENSJJAG00000004130) #14	P3h3 (ENSJJAG00000002354) #15	Gnb3 (ENSJJAG00000000612) #16	Cdca3 (ENSJJAG00000000372) #17	Usp5 (ENSJJAG00000022609) #18	Tpi1 (ENSJJAG00000022451) ##19	Spsb2 (ENSJJAG00000022156)	Lrrc23 (ENSJJAG00000021825) #20	Eno2 (ENSJJAG00000021287) #21	Atn1 (ENSJJAG00000019576) #22	Grcc10 (ENSJJAG00000018958) #23	ENSJJAG00000018809 #24	ENSJJAG00000018699 #25	Emg1 (ENSJJAG00000018448) #26	Lpcat3 (ENSJJAG00000018031) #27	ENSJJAG00000016716 #30	ENSJJAG00000015111 #29	ENSJJAG00000014098 #31	ENSJJAG00000013518 #32	Clstn3 (ENSJJAG00000013207) #33	ENSJJAG00000010801 #34	Cd163 (ENSJJAG00000008702)	Clec4e (ENSJJAG00000001281)	Clec4d (ENSJJAG00000000318)	ENSJJAG00000000075
Rodentia_A	ANCESTRAL SPECIES	4	ENSGT00510000049460 #8	ENSGT00940000159873 #9	ENSGT00390000005023.a #10	ENSGT01030000234816	ENSGT01090000259985.b.b.b.a.a.a #12	ENSGT00390000001745 #13	ENSGT00390000017213.A #14	ENSGT00940000159164 #15	ENSGT01000000214413.b.a.b.a #16	ENSGT00390000017343 #17	ENSGT00940000156036 #18	ENSGT00390000013354.d.b ##19	ENSGT01030000234629.A	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242 #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000157473 #30	ENSGT00940000158621 #29	ENSGT00940000162495 #31	ENSGT00940000162526 #32	ENSGT00950000183086.a.b #33	ENSGT00940000156605 #34	ENSGT00940000157963	ENSGT00560000078483	ENSGT00940000155987.b	ENSGT00940000163606
Hystricomorpha	ANCESTRAL SPECIES	13	ENSGT00510000049460 #8	ENSGT00940000159873 #9	ENSGT00390000005023.a #10	ENSGT01030000234816	ENSGT01090000259985.b.b.b.a.a.a #12	ENSGT00390000001745 #13	ENSGT00390000017213.A #14	ENSGT00940000159164 #15	ENSGT01000000214413.b.a.b.a #16	ENSGT00390000017343 #17	ENSGT00940000156036 #18	ENSGT00390000013354.d.b ##19	ENSGT01030000234629.A	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242 #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000157473 #30	ENSGT00940000158621 #29	ENSGT00940000162495 #31	ENSGT00940000162526 #32	ENSGT00950000183086.a.b #33	ENSGT00940000156605 #34	ENSGT00940000157963	ENSGT00940000155987.b	ENSGT00940000163606	ENSGT00940000160666
Hystricomorpha_a	ANCESTRAL SPECIES	6	ENSGT00510000049460 #8	ENSGT00940000159873 #9	ENSGT00390000005023.a #10	ENSGT01030000234816	ENSGT01090000259985.b.b.b.a.a.a #12	ENSGT00390000001745 #13	ENSGT00390000017213.A #14	ENSGT00940000159164 #15	ENSGT01000000214413.b.a.b.a #16	ENSGT00390000017343 #17	ENSGT00940000156036 #18	ENSGT00390000013354.d.b ##19	ENSGT01030000234629.A	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242 #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000157473 #30	ENSGT00940000158621 #29	ENSGT00940000162495 #31	ENSGT00940000162526 #32	ENSGT00950000183086.a.b #33	ENSGT00940000156605 #34	ENSGT00940000155987.b	ENSGT00940000163606	ENSGT00940000160666	ENSGT00940000162400
Hystricomorpha_b	ANCESTRAL SPECIES	2	ENSGT00510000049460 #8	ENSGT00940000159873 #9	ENSGT00390000005023.a #10	ENSGT01030000234816	ENSGT01090000259985.b.b.b.a.a.a #12	ENSGT00390000001745 #13	ENSGT00390000017213.A #14	ENSGT00940000159164 #15	ENSGT01000000214413.b.a.b.a #16	ENSGT00390000017343 #17	ENSGT00940000156036 #18	ENSGT00390000013354.d.b ##19	ENSGT01030000234629.A	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242 #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000157473 #30	ENSGT00940000158621 #29	ENSGT00940000162495 #31	ENSGT00940000162526 #32	ENSGT00950000183086.a.b #33	ENSGT00940000156605 #34	ENSGT00940000155987.b	ENSGT00940000163606	ENSGT00940000160666	ENSGT00940000162400
Long-tailed chinchilla	MODERN SPECIES	120	PIANP (ENSCLAG00000016394) #8	COPS7A (ENSCLAG00000014244) #9	MLF2 (ENSCLAG00000013739) #10	PTMS (ENSCLAG00000016337)	LAG3 (ENSCLAG00000014680) #12	CD4 (ENSCLAG00000016197) #13	GPR162 (ENSCLAG00000015020) #14	P3H3 (ENSCLAG00000012569) #15	GNB3 (ENSCLAG00000014669) #16	CDCA3 (ENSCLAG00000013619) #17	USP5 (ENSCLAG00000015551) #18	TPI1 (ENSCLAG00000016645) ##19	SPSB2 (ENSCLAG00000014822)	LRRC23 (ENSCLAG00000016347) #20	ENO2 (ENSCLAG00000015698) #21	ATN1 (ENSCLAG00000016679) #22	C12orf57 (ENSCLAG00000015538) #23	PTPN6 (ENSCLAG00000013644) #24	PHB2 (ENSCLAG00000015902) #25	EMG1 (ENSCLAG00000015067) #26	LPCAT3 (ENSCLAG00000015685) #27	C1S (ENSCLAG00000015517) #30	C1R (ENSCLAG00000015939) #29	C1RL (ENSCLAG00000017098) #31	RBP5 (ENSCLAG00000015079) #32	CLSTN3 (ENSCLAG00000013125) #33	PEX5 (ENSCLAG00000014902) #34	CD163 (ENSCLAG00000016131)	ENSCLAG00000014034	CLEC4E (ENSCLAG00000014802)	CLEC4D (ENSCLAG00000015345)
Degu	MODERN SPECIES	219	COPS7A (ENSODEG00000002432) #9	MLF2 (ENSODEG00000002383) #10	ENSODEG00000002310	LAG3 (ENSODEG00000002278) #12	ENSODEG00000002251	ENSODEG00000018791	GPR162 (ENSODEG00000003518) #14	P3H3 (ENSODEG00000003441) #15	GNB3 (ENSODEG00000003424) #16	CDCA3 (ENSODEG00000003383) #17	USP5 (ENSODEG00000002978) #18	ENSODEG00000002846 ##19	SPSB2 (ENSODEG00000002806)	LRRC23 (ENSODEG00000002781) #20	ENO2 (ENSODEG00000002668) #21	ATN1 (ENSODEG00000003478) #22	C12orf57 (ENSODEG00000003444) #23	PTPN6 (ENSODEG00000003352) #24	ENSODEG00000003109 #25	EMG1 (ENSODEG00000004059) #26	LPCAT3 (ENSODEG00000004029) #27	C1S (ENSODEG00000003726) #30	ENSODEG00000003709 #29	C1RL (ENSODEG00000003650) #31	RBP5 (ENSODEG00000003636) #32	CLSTN3 (ENSODEG00000002598) #33	PEX5 (ENSODEG00000002469) #34	ENSODEG00000002405	ENSODEG00000018806
Naked mole-rat female	MODERN SPECIES	24	PIANP (ENSHGLG00000003689) #8	COPS7A (ENSHGLG00000032684) #9	MLF2 (ENSHGLG00000003883) #10	PTMS (ENSHGLG00000038669)	LAG3 (ENSHGLG00000004095) #12	CD4 (ENSHGLG00000004194) #13	GPR162 (ENSHGLG00000004580) #14	P3H3 (ENSHGLG00000004948) #15	GNB3 (ENSHGLG00000005327) #16	CDCA3 (ENSHGLG00000005685) #17	USP5 (ENSHGLG00000006008) #18	TPI1 (ENSHGLG00000047042) ##19	SPSB2 (ENSHGLG00000000850)	LRRC23 (ENSHGLG00000000873) #20	ENO2 (ENSHGLG00000040320) #21	ATN1 (ENSHGLG00000000959) #22	C12orf57 (ENSHGLG00000000977) #23	PTPN6 (ENSHGLG00000001036) #24	PHB2 (ENSHGLG00000001214) #25	EMG1 (ENSHGLG00000001300) #26	LPCAT3 (ENSHGLG00000001329) #27	C1S (ENSHGLG00000038360) #30	C1R (ENSHGLG00000001453) #29	C1RL (ENSHGLG00000042250) #31	ENSHGLG00000001579 #32	CLSTN3 (ENSHGLG00000001611) #33	ENSHGLG00000035824	ENSHGLG00000001679 #34	ENSHGLG00000037231	ENSHGLG00000001870	CLEC4D (ENSHGLG00000047579)
Sciuridae	ANCESTRAL SPECIES	15	ENSGT00510000049460 #8	ENSGT00940000159873 #9	ENSGT00390000005023.a #10	ENSGT01030000234816	ENSGT01090000259985.b.b.b.a.a.a #12	ENSGT00390000001745 #13	ENSGT00390000017213.A #14	ENSGT00940000159164 #15	ENSGT01000000214413.b.a.b.a #16	ENSGT00390000017343 #17	ENSGT00940000156036 #18	ENSGT00390000013354.d.b ##19	ENSGT01030000234629.A	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242 #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000157473 #30	ENSGT00940000158621 #29	ENSGT00940000162495 #31	ENSGT00940000162526 #32	ENSGT00950000183086.a.b #33	ENSGT00940000156605 #34	ENSGT00940000157963.e.a.b	ENSGT00560000078483	ENSGT00940000155987.b	ENSGT00940000163606
Marmotini	ANCESTRAL SPECIES	43	ENSGT00510000049460 #8	ENSGT00940000159873 #9	ENSGT00390000005023.a #10	ENSGT01030000234816	ENSGT01090000259985.b.b.b.a.a.a #12	ENSGT00390000001745 #13	ENSGT00390000017213.A #14	ENSGT00940000159164 #15	ENSGT01000000214413.b.a.b.a #16	ENSGT00390000017343 #17	ENSGT00940000156036 #18	ENSGT00390000013354.d.b ##19	ENSGT01030000234629.A	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242 #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000157473 #30	ENSGT00940000158621 #29	ENSGT00940000162495 #31	ENSGT00940000162526 #32	ENSGT00950000183086.a.b #33	ENSGT00940000156605 #34	ENSGT00940000162741.j	ENSGT00940000157963.e.b	ENSGT00940000157963.e.a.a	ENSGT00940000157963.e.a.b.a.b.b
Alpin marmot	MODERN SPECIES	69	PIANP (ENSMMMG00000017119) #8	COPS7A (ENSMMMG00000017113) #9	MLF2 (ENSMMMG00000017103) #10	ENSMMMG00000017097	LAG3 (ENSMMMG00000017001) #12	CD4 (ENSMMMG00000016990) #13	GPR162 (ENSMMMG00000016980) #14	P3H3 (ENSMMMG00000016960) #15	GNB3 (ENSMMMG00000016949) #16	CDCA3 (ENSMMMG00000016946) #17	USP5 (ENSMMMG00000016921) #18	TPI1 (ENSMMMG00000016904) ##19	SPSB2 (ENSMMMG00000016902)	LRRC23 (ENSMMMG00000016890) #20	ENO2 (ENSMMMG00000016836) #21	ATN1 (ENSMMMG00000016825) #22	C12orf57 (ENSMMMG00000016822) #23	PTPN6 (ENSMMMG00000016690) #24	PHB2 (ENSMMMG00000016672) #25	EMG1 (ENSMMMG00000016665) #26	LPCAT3 (ENSMMMG00000016656) #27	C1S (ENSMMMG00000016640) #30	C1R (ENSMMMG00000016634) #29	C1RL (ENSMMMG00000016631) #31	RBP5 (ENSMMMG00000016625) #32	CLSTN3 (ENSMMMG00000016592) #33	PEX5 (ENSMMMG00000016410) #34	ENSMMMG00000016404	ENSMMMG00000016218	ENSMMMG00000016202	ENSMMMG00000012230
Marmotini_b	ANCESTRAL SPECIES	111	ENSGT00510000049460 #8	ENSGT00940000159873 #9	ENSGT00390000005023.a #10	ENSGT01030000234816	ENSGT01090000259985.b.b.b.a.a.a #12	ENSGT00390000001745 #13	ENSGT00390000017213.A #14	ENSGT00940000159164 #15	ENSGT01000000214413.b.a.b.a #16	ENSGT00390000017343 #17	ENSGT00940000156036 #18	ENSGT00390000013354.d.b ##19	ENSGT01030000234629.A	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242 #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000157473 #30	ENSGT00940000158621 #29	ENSGT00940000162495 #31	ENSGT00940000162526 #32	ENSGT00950000183086.a.b #33	ENSGT00940000156605 #34	ENSGT00940000162741.j	ENSGT00940000157963.e.b	ENSGT00940000157963.e.a.a
Squirrel	MODERN SPECIES	309	PIANP (ENSSTOG00000028660) #8	COPS7A (ENSSTOG00000027250) #9	ENSSTOG00000009908 #10	PTMS (ENSSTOG00000034819)	LAG3 (ENSSTOG00000015581) #12	CD4 (ENSSTOG00000027178) #13	GPR162 (ENSSTOG00000020091) #14	P3H3 (ENSSTOG00000015582) #15	GNB3 (ENSSTOG00000015586) #16	CDCA3 (ENSSTOG00000023573) #17	USP5 (ENSSTOG00000015589) #18	SPSB2 (ENSSTOG00000026457)	TPI1 (ENSSTOG00000021940) ##19	LRRC23 (ENSSTOG00000004121) #20	ENO2 (ENSSTOG00000012290) #21	ATN1 (ENSSTOG00000024332) #22	C12orf57 (ENSSTOG00000024055) #23	PTPN6 (ENSSTOG00000000383) #24	PHB2 (ENSSTOG00000027814) #25	EMG1 (ENSSTOG00000000387) #26	LPCAT3 (ENSSTOG00000000390) #27	ENSSTOG00000032593	C1S (ENSSTOG00000015162) #30	C1R (ENSSTOG00000002585) #29	RBP5 (ENSSTOG00000002611) #32	CLSTN3 (ENSSTOG00000002622) #33	PEX5 (ENSSTOG00000002648) #34	ENSSTOG00000024410	ENSSTOG00000034235	ENSSTOG00000028404
Arctic ground squirrel	MODERN SPECIES	287	COPS7A (ENSUPAG00010012353) #9	ENSUPAG00010012348	MLF2 (ENSUPAG00010012341) #10	ENSUPAG00010012331	LAG3 (ENSUPAG00010012322) #12	CD4 (ENSUPAG00010012311) #13	GPR162 (ENSUPAG00010012307) #14	P3H3 (ENSUPAG00010012273) #15	GNB3 (ENSUPAG00010012262) #16	CDCA3 (ENSUPAG00010012251) #17	USP5 (ENSUPAG00010012212) #18	TPI1 (ENSUPAG00010012206) ##19	SPSB2 (ENSUPAG00010012200)	LRRC23 (ENSUPAG00010012187) #20	ENO2 (ENSUPAG00010012149) #21	ATN1 (ENSUPAG00010012129) #22	C12orf57 (ENSUPAG00010012116) #23	PTPN6 (ENSUPAG00010011946) #24	PHB2 (ENSUPAG00010011907) #25	EMG1 (ENSUPAG00010011895) #26	LPCAT3 (ENSUPAG00010011881) #27	ENSUPAG00010011873	C1S (ENSUPAG00010011857) #30	C1R (ENSUPAG00010011846) #29	C1RL (ENSUPAG00010011772) #31	RBP5 (ENSUPAG00010011765) #32	CLSTN3 (ENSUPAG00010011730) #33	PEX5 (ENSUPAG00010011683) #34	ENSUPAG00010011679	ENSUPAG00010011164	ENSUPAG00010009458
Eurasian red squirrel	MODERN SPECIES	14	PIANP (ENSSVLG00005018592) #8	ENSSVLG00005018640 #9	MLF2 (ENSSVLG00005018671) #10	ENSSVLG00005018711 #11	LAG3 (ENSSVLG00005018831) #12	CD4 (ENSSVLG00005018976) #13	GPR162 (ENSSVLG00005019129) #14	P3H3 (ENSSVLG00005019312) #15	GNB3 (ENSSVLG00005019432) #16	ENSSVLG00005019585 #17	USP5 (ENSSVLG00005019715) #18	TPI1 (ENSSVLG00005019785) ##19	SPSB2 (ENSSVLG00005019907)	LRRC23 (ENSSVLG00005020001) #20	ENO2 (ENSSVLG00005020249) #21	ATN1 (ENSSVLG00005020350) #22	C12orf57 (ENSSVLG00005020402) #23	PTPN6 (ENSSVLG00005000251) #24	ENSSVLG00005000414 #25	EMG1 (ENSSVLG00005000499) #26	LPCAT3 (ENSSVLG00005000522) #27	C1S (ENSSVLG00005000584) #30	C1R (ENSSVLG00005000643) #29	ENSSVLG00005000676	RBP5 (ENSSVLG00005000704) #32	CLSTN3 (ENSSVLG00005000748) #33	PEX5 (ENSSVLG00005000805) #34	ENSSVLG00005000856	ENSSVLG00005000869	ENSSVLG00005000884	ENSSVLG00005000919
Lagomorpha	ANCESTRAL SPECIES	37	ENSGT00510000049460 #8	ENSGT00940000159873 #9	ENSGT00390000005023.a #10	ENSGT01030000234816	ENSGT01090000259985.b.b.b.a.a.a #12	ENSGT00390000001745 #13	ENSGT00390000017213.A #14	ENSGT00940000159164 #15	ENSGT01000000214413.b.a.b.a #16	ENSGT00390000017343 #17	ENSGT00940000156036 #18	ENSGT00390000013354.d.b ##19	ENSGT01030000234629.A	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242 #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000157473 #30	ENSGT00940000158621 #29	ENSGT00940000162526 #32	ENSGT00950000183086.a.b #33	ENSGT00940000156605 #34	ENSGT00940000155987.b	ENSGT00940000160666	ENSGT00940000162400	ENSGT00940000158835	ENSGT00390000009359.a
Rabbit	MODERN SPECIES	19	ZNF384 (ENSOCUG00000003747) #7	PIANP (ENSOCUG00000003749) #8	COPS7A (ENSOCUG00000011187) #9	ENSOCUG00000003750 #10	LAG3 (ENSOCUG00000011196) #12	ENSOCUG00000012911 #13	GPR162 (ENSOCUG00000030705) #14	P3H3 (ENSOCUG00000012916) #15	GNB3 (ENSOCUG00000012934) #16	CDCA3 (ENSOCUG00000022434) #17	USP5 (ENSOCUG00000003582) #18	TPI1 (ENSOCUG00000025649) ##19	SPSB2 (ENSOCUG00000026363)	LRRC23 (ENSOCUG00000026502) #20	ENO2 (ENSOCUG00000003589) #21	ATN1 (ENSOCUG00000003592) #22	C12orf57 (ENSOCUG00000013275) #23	PTPN6 (ENSOCUG00000003599) #24	PHB2 (ENSOCUG00000026538) #25	EMG1 (ENSOCUG00000003603) #26	LPCAT3 (ENSOCUG00000014461) #27	C1S (ENSOCUG00000014468) #30	C1R (ENSOCUG00000014480) #29	RBP5 (ENSOCUG00000023679) #32	CLSTN3 (ENSOCUG00000014499) #33	PEX5 (ENSOCUG00000005856) #34	ENSOCUG00000039239	ENSOCUG00000027440	CD163 (ENSOCUG00000003958)	ENSOCUG00000022788	CLEC4E (ENSOCUG00000009195)
Pika	MODERN SPECIES	233	ACRBP (ENSOPRG00000003592)	ZNF384 (ENSOPRG00000003626) #7	COPS7A (ENSOPRG00000003640) #9	MLF2 (ENSOPRG00000003657) #10	PTMS (ENSOPRG00000003690)	LAG3 (ENSOPRG00000003706) #12	CD4 (ENSOPRG00000003747) #13	P3H3 (ENSOPRG00000003768) #15	GNB3 (ENSOPRG00000003814) #16	CDCA3 (ENSOPRG00000003837) #17	USP5 (ENSOPRG00000003849) #18	TPI1 (ENSOPRG00000003895) ##19	SPSB2 (ENSOPRG00000003916)	LRRC23 (ENSOPRG00000003927) #20	ENO2 (ENSOPRG00000003940) #21	ATN1 (ENSOPRG00000003965) #22	C12orf57 (ENSOPRG00000004013) #23	PTPN6 (ENSOPRG00000004028) #24	PHB2 (ENSOPRG00000019151) #25	EMG1 (ENSOPRG00000004071) #26	C1S (ENSOPRG00000004093) #30
Tree shrew	MODERN SPECIES	402																ENSTBEG00000015017 #22	EMG1 (ENSTBEG00000015406) #26	LPCAT3 (ENSTBEG00000015525) #27
Laurasiatheria	ANCESTRAL SPECIES	6	ENSGT00510000049460 #8	ENSGT00940000159873 #9	ENSGT00390000005023.a #10	ENSGT01030000234816	ENSGT01090000259985.b.b.b.a.a.a #12	ENSGT00390000001745 #13	ENSGT00390000017213.A #14	ENSGT00940000159164 #15	ENSGT01000000214413.b.a.b.a #16	ENSGT00390000017343 #17	ENSGT00940000156036 #18	ENSGT00390000013354.d.b ##19	ENSGT01030000234629.A	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242 #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000157473 #30	ENSGT00940000158621 #29	ENSGT00940000162495 #31	ENSGT00940000162526 #32	ENSGT00950000183086.a.b #33	ENSGT00940000156605 #34	ENSGT00940000157963	ENSGT00560000078483	ENSGT00940000164229 #37	ENSGT00940000155987.b
Laurasiatheria_a	ANCESTRAL SPECIES	6	ENSGT00510000049460 #8	ENSGT00940000159873 #9	ENSGT00390000005023.a #10	ENSGT01030000234816	ENSGT01090000259985.b.b.b.a.a.a #12	ENSGT00390000001745 #13	ENSGT00390000017213.A #14	ENSGT00940000159164 #15	ENSGT01000000214413.b.a.b.a #16	ENSGT00390000017343 #17	ENSGT00940000156036 #18	ENSGT00390000013354.d.b ##19	ENSGT01030000234629.A	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242 #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000157473 #30	ENSGT00940000158621 #29	ENSGT00940000162495 #31	ENSGT00940000162526 #32	ENSGT00950000183086.a.b #33	ENSGT00940000156605 #34	ENSGT00940000157963	ENSGT00560000078483	ENSGT00940000164229 #37	ENSGT00940000155987.b
Laurasiatheria_b	ANCESTRAL SPECIES	6	ENSGT00510000049460 #8	ENSGT00940000159873 #9	ENSGT00390000005023.a #10	ENSGT01030000234816	ENSGT01090000259985.b.b.b.a.a.a #12	ENSGT00390000001745 #13	ENSGT00390000017213.A #14	ENSGT00940000159164 #15	ENSGT01000000214413.b.a.b.a #16	ENSGT00390000017343 #17	ENSGT00940000156036 #18	ENSGT00390000013354.d.b ##19	ENSGT01030000234629.A	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242 #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000157473 #30	ENSGT00940000158621 #29	ENSGT00940000162495 #31	ENSGT00940000162526 #32	ENSGT00950000183086.a.b #33	ENSGT00940000156605 #34	ENSGT00940000157963	ENSGT00560000078483	ENSGT00940000164229 #37	ENSGT00940000155987.b
Carnivora	ANCESTRAL SPECIES	3	ENSGT00510000049460 #8	ENSGT00940000159873 #9	ENSGT00390000005023.a #10	ENSGT01030000234816	ENSGT01090000259985.b.b.b.a.a.a #12	ENSGT00390000001745 #13	ENSGT00390000017213.A #14	ENSGT00940000159164 #15	ENSGT01000000214413.b.a.b.a #16	ENSGT00390000017343 #17	ENSGT00940000156036 #18	ENSGT00390000013354.d.b ##19	ENSGT01030000234629.A	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242 #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000157473 #30	ENSGT00940000158621 #29	ENSGT00940000162495 #31	ENSGT00940000162526 #32	ENSGT00950000183086.a.b #33	ENSGT00940000156605 #34	ENSGT00940000157963	ENSGT00560000078483	ENSGT00940000155987.b	ENSGT00940000160666
Caniformia	ANCESTRAL SPECIES	19	ENSGT00510000049460 #8	ENSGT00940000159873 #9	ENSGT00390000005023.a #10	ENSGT01030000234816	ENSGT01090000259985.b.b.b.a.a.a #12	ENSGT00390000001745 #13	ENSGT00390000017213.A #14	ENSGT00940000159164 #15	ENSGT01000000214413.b.a.b.a #16	ENSGT00390000017343 #17	ENSGT00940000156036 #18	ENSGT00390000013354.d.b ##19	ENSGT01030000234629.A	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242 #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000157473 #30	ENSGT00940000158621 #29	ENSGT00940000162495 #31	ENSGT00940000162526 #32	ENSGT00950000183086.a.b #33	ENSGT00940000156605 #34	ENSGT00940000157963	ENSGT00560000078483	ENSGT00940000155987.b	ENSGT00940000160666
Caniformia_b	ANCESTRAL SPECIES	17	ENSGT00510000049460 #8	ENSGT00940000159873 #9	ENSGT00390000005023.a #10	ENSGT01030000234816	ENSGT01090000259985.b.b.b.a.a.a #12	ENSGT00390000001745 #13	ENSGT00390000017213.A #14	ENSGT00940000159164 #15	ENSGT01000000214413.b.a.b.a #16	ENSGT00390000017343 #17	ENSGT00940000156036 #18	ENSGT00390000013354.d.b ##19	ENSGT01030000234629.A	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242 #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000157473 #30	ENSGT00940000158621 #29	ENSGT00940000162495 #31	ENSGT00940000162526 #32	ENSGT00950000183086.a.b #33	ENSGT00940000156605 #34	ENSGT00940000157963	ENSGT00560000078483	ENSGT00940000155987.b	ENSGT00940000160666
Ursidae	ANCESTRAL SPECIES	25	ENSGT00940000156904 #7	ENSGT00510000049460 #8	ENSGT00940000159873.b #9	ENSGT00390000005023.a #10	ENSGT01090000259985.b.b.b.a.a.a #12	ENSGT00390000001745 #13	ENSGT00390000017213.A #14	ENSGT00940000159164 #15	ENSGT01000000214413.b.a.b.a #16	ENSGT00390000017343 #17	ENSGT00940000156036 #18	ENSGT00390000013354.d.b ##19	ENSGT01030000234629.A	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a.b #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242 #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000157473 #30	ENSGT00940000158621 #29	ENSGT00950000183086.a.b #33	ENSGT00940000156605 #34	ENSGT00940000157963	ENSGT00560000078483	ENSGT00940000155987.b	ENSGT00940000160666	ENSGT00940000162400	ENSGT00940000162938
Ursus	ANCESTRAL SPECIES	103	ENSGT00940000156904 #7	ENSGT00510000049460 #8	ENSGT00940000159873.b #9	ENSGT00390000005023.a #10	ENSGT01090000259985.b.b.b.a.a.a #12	ENSGT00390000001745 #13	ENSGT00390000017213.A #14	ENSGT00940000159164 #15	ENSGT01000000214413.b.a.b.a #16	ENSGT00390000017343 #17	ENSGT00940000156036 #18	ENSGT00390000013354.d.b ##19	ENSGT01030000234629.A	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a.b #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242 #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000157473 #30	ENSGT00940000158621 #29	ENSGT00940000162495 #31	ENSGT00940000162526 #32	ENSGT00950000183086.a.b #33	ENSGT00940000156605 #34	ENSGT00940000157963	ENSGT00560000078483	ENSGT00940000155987.b	ENSGT00940000160666
American black bear	MODERN SPECIES	1884					ENSUAMG00000026856 #13	GPR162 (ENSUAMG00000026858) #14	P3H3 (ENSUAMG00000026859) #15	GNB3 (ENSUAMG00000026878) #16	ENSUAMG00000026895 #17	ENSUAMG00000026899 #17	USP5 (ENSUAMG00000026901) #18	TPI1 (ENSUAMG00000026906) ##19	SPSB2 (ENSUAMG00000026909)	LRRC23 (ENSUAMG00000026911) #20	ENO2 (ENSUAMG00000026916) #21	ATN1 (ENSUAMG00000026919) #22	C12orf57 (ENSUAMG00000026923) #23	PTPN6 (ENSUAMG00000026927) #24	PHB2 (ENSUAMG00000026938) #25	EMG1 (ENSUAMG00000026959) #26	LPCAT3 (ENSUAMG00000026964) #27
Polar bear	MODERN SPECIES	484	ING4 (ENSUMAG00000005092)	ZNF384 (ENSUMAG00000005073) #7	PIANP (ENSUMAG00000005067) #8	COPS7A (ENSUMAG00000005057) #9	MLF2 (ENSUMAG00000005049) #10	LAG3 (ENSUMAG00000005008) #12	CD4 (ENSUMAG00000004996) #13	P3H3 (ENSUMAG00000004936) #15	GNB3 (ENSUMAG00000004881) #16	CDCA3 (ENSUMAG00000004864) #17	USP5 (ENSUMAG00000004200) #18	TPI1 (ENSUMAG00000004130) ##19	SPSB2 (ENSUMAG00000004129)	LRRC23 (ENSUMAG00000004125) #20	ENO2 (ENSUMAG00000004123) #21	ATN1 (ENSUMAG00000004101) #22	ENSUMAG00000004089 #23	PTPN6 (ENSUMAG00000003383) #24	PHB2 (ENSUMAG00000003256) #25	EMG1 (ENSUMAG00000003248) #26	LPCAT3 (ENSUMAG00000003237) #27	C1S (ENSUMAG00000003232) #30	C1R (ENSUMAG00000003227) #29	C1RL (ENSUMAG00000003224) #31	RBP5 (ENSUMAG00000003222) #32	CLSTN3 (ENSUMAG00000003194) #33	PEX5 (ENSUMAG00000003162) #34	ENSUMAG00000003145	ENSUMAG00000003138	CD163 (ENSUMAG00000003115)	CLEC4E (ENSUMAG00000003105)
Giant Panda	MODERN SPECIES	7	PIANP (ENSAMEG00000014112) #8	COPS7A (ENSAMEG00000014096) #9	MLF2 (ENSAMEG00000014077) #10	ENSAMEG00000014074	LAG3 (ENSAMEG00000014063) #12	CD4 (ENSAMEG00000014043) #13	GPR162 (ENSAMEG00000014035) #14	P3H3 (ENSAMEG00000014022) #15	GNB3 (ENSAMEG00000013993) #16	CDCA3 (ENSAMEG00000013985) #17	USP5 (ENSAMEG00000013920) #18	ENSAMEG00000027919 ##19	SPSB2 (ENSAMEG00000026509)	LRRC23 (ENSAMEG00000013885) #20	ENO2 (ENSAMEG00000013841) #21	ATN1 (ENSAMEG00000013826) #22	C12orf57 (ENSAMEG00000013823) #23	PTPN6 (ENSAMEG00000013783) #24	PHB2 (ENSAMEG00000013760) #25	EMG1 (ENSAMEG00000013753) #26	LPCAT3 (ENSAMEG00000013733) #27	C1S (ENSAMEG00000013668) #30	C1R (ENSAMEG00000013566) #29	CLSTN3 (ENSAMEG00000013498) #33	PEX5 (ENSAMEG00000013470) #34	ENSAMEG00000013450	ENSAMEG00000029290	ENSAMEG00000013414	ENSAMEG00000013399	CLEC4D (ENSAMEG00000013378)	CLEC4A (ENSAMEG00000016975)
Mustelinae	ANCESTRAL SPECIES	95	ENSGT00510000049460 #8	ENSGT00940000159873 #9	ENSGT00390000005023.a #10	ENSGT01030000234816	ENSGT01090000259985.b.b.b.a.a.a #12	ENSGT00390000001745 #13	ENSGT00390000017213.A #14	ENSGT00940000159164 #15	ENSGT01000000214413.b.a.b.a #16	ENSGT00390000017343 #17	ENSGT00940000156036 #18	ENSGT00390000013354.d.b ##19	ENSGT01030000234629.A	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242 #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000157473 #30	ENSGT00940000158621 #29	ENSGT00940000162495 #31	ENSGT00940000162526 #32	ENSGT00950000183086.a.b #33	ENSGT00940000156605 #34	ENSGT00940000157963	ENSGT00560000078483	ENSGT00940000155987.b	ENSGT00940000160666
Ferret	MODERN SPECIES	284	COPS7A (ENSMPUG00000016835) #9	MLF2 (ENSMPUG00000016834) #10	PTMS (ENSMPUG00000016830)	ENSMPUG00000016828	LAG3 (ENSMPUG00000016825) #12	CD4 (ENSMPUG00000016809) #13	GPR162 (ENSMPUG00000016806) #14	P3H3 (ENSMPUG00000016793) #15	GNB3 (ENSMPUG00000016783) #16	CDCA3 (ENSMPUG00000016781) #17	USP5 (ENSMPUG00000016778) #18	ENSMPUG00000016774 ##19	SPSB2 (ENSMPUG00000016772)	LRRC23 (ENSMPUG00000016771) #20	ENO2 (ENSMPUG00000016769) #21	ATN1 (ENSMPUG00000016768) #22	PTPN6 (ENSMPUG00000016767) #24	PHB2 (ENSMPUG00000016765) #25	EMG1 (ENSMPUG00000016763) #26	LPCAT3 (ENSMPUG00000016762) #27	C1S (ENSMPUG00000016761) #30	C1R (ENSMPUG00000016760) #29	C1RL (ENSMPUG00000016759) #31	RBP5 (ENSMPUG00000016758) #32	CLSTN3 (ENSMPUG00000016757) #33	PEX5 (ENSMPUG00000016756) #34	ENSMPUG00000016754	ENSMPUG00000016753	ENSMPUG00000016752	ENSMPUG00000016751	CD163 (ENSMPUG00000016750)
American mink	MODERN SPECIES	333	PIANP (ENSNVIG00000024637) #8	CSN7A (ENSNVIG00000024636) #9	MLF2 (ENSNVIG00000024635) #10	PTMS (ENSNVIG00000024634)	LAG3 (ENSNVIG00000024633) #12	CD4 (ENSNVIG00000024632) #13	GPR162 (ENSNVIG00000024631) #14	P3H3 (ENSNVIG00000024630) #15	GNB3 (ENSNVIG00000024629) #16	CDCA3 (ENSNVIG00000024628) #17	USP5 (ENSNVIG00000024627) #18	TPI1 (ENSNVIG00000024626) ##19	SPSB2 (ENSNVIG00000024625)	LRC23 (ENSNVIG00000024624) #20	ENO2 (ENSNVIG00000024623) #21	ATN1 (ENSNVIG00000024622) #22	ENSNVIG00000024621 #23	PTPN6 (ENSNVIG00000024620) #24	PHB2 (ENSNVIG00000024616) #25	EMG1 (ENSNVIG00000024615) #26	LPCAT3 (ENSNVIG00000024614) #27	C1S (ENSNVIG00000024613) #30	C1R (ENSNVIG00000024612) #29	C1RL (ENSNVIG00000024611) #31	RET5 (ENSNVIG00000024610) #32	CLSTN3 (ENSNVIG00000024609) #33	PEX5 (ENSNVIG00000024606) #34	ENSNVIG00000024602	ENSNVIG00000024601	CD163 (ENSNVIG00000024600)
Canidae	ANCESTRAL SPECIES	8	ENSGT00510000049460 #8	ENSGT00940000159873 #9	ENSGT00390000005023.a #10	ENSGT01030000234816	ENSGT01090000259985.b.b.b.a.a.a #12	ENSGT00390000001745 #13	ENSGT00390000017213.A #14	ENSGT00940000159164 #15	ENSGT01000000214413.b.a.b.a #16	ENSGT00390000017343 #17	ENSGT00940000156036 #18	ENSGT00390000013354.d.b ##19	ENSGT01030000234629.A	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242 #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000157473 #30	ENSGT00940000158621 #29	ENSGT00940000162495 #31	ENSGT00940000162526 #32	ENSGT00950000183086.a.b #33	ENSGT00940000156605 #34	ENSGT00940000157963	ENSGT00560000078483	ENSGT00940000155987.b	ENSGT00940000160666
Canis_lupus	ANCESTRAL SPECIES	14	ENSGT00510000049460 #8	ENSGT00940000159873 #9	ENSGT00390000005023.a #10	ENSGT01030000234816	ENSGT01090000259985.b.b.b.a.a.a #12	ENSGT00390000001745 #13	ENSGT00390000017213.A #14	ENSGT00940000159164 #15	ENSGT01000000214413.b.a.b.a #16	ENSGT00390000017343 #17	ENSGT00940000156036 #18	ENSGT00390000013354.d.b ##19	ENSGT01030000234629.A	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242 #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000157473 #30	ENSGT00940000158621 #29	ENSGT00940000162495 #31	ENSGT00940000162526 #32	ENSGT00950000183086.a.b #33	ENSGT00940000156605 #34	ENSGT00940000157963	ENSGT00560000078483	ENSGT00940000155987.b	ENSGT00940000160666
Dingo	MODERN SPECIES	56	PIANP (ENSCAFG00020002942) #8	COPS7A (ENSCAFG00020002947) #9	MLF2 (ENSCAFG00020002950) #10	ENSCAFG00020002965	LAG3 (ENSCAFG00020002976) #12	CD4 (ENSCAFG00020002986) #13	GPR162 (ENSCAFG00020002990) #14	P3H3 (ENSCAFG00020003004) #15	GNB3 (ENSCAFG00020003050) #16	CDCA3 (ENSCAFG00020003055) #17	USP5 (ENSCAFG00020003066) #18	TPI1 (ENSCAFG00020003073) ##19	SPSB2 (ENSCAFG00020003076)	LRRC23 (ENSCAFG00020003078) #20	ENO2 (ENSCAFG00020003086) #21	ATN1 (ENSCAFG00020003089) #22	C12orf57 (ENSCAFG00020003105) #23	PTPN6 (ENSCAFG00020003109) #24	PHB2 (ENSCAFG00020003126) #25	EMG1 (ENSCAFG00020003127) #26	LPCAT3 (ENSCAFG00020003130) #27	C1S (ENSCAFG00020003135) #30	C1R (ENSCAFG00020003140) #29	C1RL (ENSCAFG00020003144) #31	RBP5 (ENSCAFG00020003147) #32	CLSTN3 (ENSCAFG00020003152) #33	PEX5 (ENSCAFG00020003159) #34	ENSCAFG00020003201	ENSCAFG00020003421	CD163 (ENSCAFG00020003427)	CLEC4E (ENSCAFG00020003453)
Dog	MODERN SPECIES	19	PIANP (ENSCAFG00845028055) #8	COPS7A (ENSCAFG00845027958) #9	MLF2 (ENSCAFG00845027898) #10	PTMS (ENSCAFG00845027847)	LAG3 (ENSCAFG00845027788) #12	CD4 (ENSCAFG00845027739) #13	GPR162 (ENSCAFG00845027631) #14	P3H3 (ENSCAFG00845027539) #15	GNB3 (ENSCAFG00845027447) #16	CDCA3 (ENSCAFG00845027345) #17	USP5 (ENSCAFG00845027217) #18	TPI1 (ENSCAFG00845027022) ##19	SPSB2 (ENSCAFG00845026990)	LRRC23 (ENSCAFG00845026868) #20	ENO2 (ENSCAFG00845026633) #21	ATN1 (ENSCAFG00845026413) #22	C12orf57 (ENSCAFG00845026325) #23	PTPN6 (ENSCAFG00845026107) #24	PHB2 (ENSCAFG00845025797) #25	EMG1 (ENSCAFG00845025699) #26	LPCAT3 (ENSCAFG00845025601) #27	C1S (ENSCAFG00845025415) #30	C1R (ENSCAFG00845025120) #29	C1RL (ENSCAFG00845024953) #31	ENSCAFG00845024907 #32	CLSTN3 (ENSCAFG00845024611) #33	PEX5 (ENSCAFG00845024224) #34	ENSCAFG00845023990	ENSCAFG00845023930	ENSCAFG00845023895	CD163 (ENSCAFG00845023298)
Red fox	MODERN SPECIES	18	ZNF384 (ENSVVUG00000011329) #7	PIANP (ENSVVUG00000011301) #8	COPS7A (ENSVVUG00000011285) #9	MLF2 (ENSVVUG00000011279) #10	LAG3 (ENSVVUG00000011272) #12	CD4 (ENSVVUG00000011267) #13	GPR162 (ENSVVUG00000011261) #14	P3H3 (ENSVVUG00000011231) #15	GNB3 (ENSVVUG00000011081) #16	CDCA3 (ENSVVUG00000011065) #17	USP5 (ENSVVUG00000011044) #18	ENSVVUG00000011024 ##19	SPSB2 (ENSVVUG00000011016)	LRRC23 (ENSVVUG00000010999) #20	ENO2 (ENSVVUG00000010987) #21	ATN1 (ENSVVUG00000010945) #22	CUNH12orf57 (ENSVVUG00000010932) #23	PTPN6 (ENSVVUG00000010907) #24	ENSVVUG00000010819 #25	EMG1 (ENSVVUG00000010807) #26	LPCAT3 (ENSVVUG00000010795) #27	C1S (ENSVVUG00000010771) #30	C1R (ENSVVUG00000010758) #29	C1RL (ENSVVUG00000010755) #31	RBP5 (ENSVVUG00000010750) #32	CLSTN3 (ENSVVUG00000010740) #33	PEX5 (ENSVVUG00000010700) #34	ENSVVUG00000010676	ENSVVUG00000010668	CD163 (ENSVVUG00000010646)	CLEC4E (ENSVVUG00000010608)
Felidae	ANCESTRAL SPECIES	2	ENSGT00510000049460 #8	ENSGT00940000159873 #9	ENSGT00390000005023.a #10	ENSGT01030000234816	ENSGT01090000259985.b.b.b.a.a.a #12	ENSGT00390000001745 #13	ENSGT00390000017213.A #14	ENSGT00940000159164 #15	ENSGT01000000214413.b.a.b.a #16	ENSGT00390000017343 #17	ENSGT00940000156036 #18	ENSGT00390000013354.d.b ##19	ENSGT01030000234629.A	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242 #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000157473 #30	ENSGT00940000158621 #29	ENSGT00940000162495 #31	ENSGT00940000162526 #32	ENSGT00950000183086.a.b #33	ENSGT00940000156605 #34	ENSGT00940000157963	ENSGT00560000078483	ENSGT00940000155987.b	ENSGT00940000160666
Panthera	ANCESTRAL SPECIES		ENSGT00510000049460 #8	ENSGT00940000159873 #9	ENSGT00390000005023.a #10	ENSGT01030000234816	ENSGT01090000259985.b.b.b.a.a.a #12	ENSGT00390000001745 #13	ENSGT00390000017213.A #14	ENSGT00940000159164 #15	ENSGT01000000214413.b.a.b.a #16	ENSGT00390000017343 #17	ENSGT00940000156036 #18	ENSGT00390000013354.d.b ##19	ENSGT01030000234629.A	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242 #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000157473 #30	ENSGT00940000158621 #29	ENSGT00940000162495 #31	ENSGT00940000162526 #32	ENSGT00950000183086.a.b #33	ENSGT00940000156605 #34	ENSGT00940000157963	ENSGT00560000078483	ENSGT00940000155987.b	ENSGT00940000160666
Panthera_a	ANCESTRAL SPECIES	5	ENSGT00510000049460 #8	ENSGT00940000159873 #9	ENSGT00390000005023.a #10	ENSGT01030000234816	ENSGT01090000259985.b.b.b.a.a.a #12	ENSGT00390000001745 #13	ENSGT00390000017213.A #14	ENSGT00940000159164 #15	ENSGT01000000214413.b.a.b.a #16	ENSGT00390000017343 #17	ENSGT00940000156036 #18	ENSGT00390000013354.d.b ##19	ENSGT01030000234629.A	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242 #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000157473 #30	ENSGT00940000158621 #29	ENSGT00940000162495 #31	ENSGT00940000162526 #32	ENSGT00950000183086.a.b #33	ENSGT00940000156605 #34	ENSGT00940000157963	ENSGT00560000078483	ENSGT00940000155987.b	ENSGT00940000160666
lion	MODERN SPECIES	7	PIANP (ENSPLOG00000002539) #8	COPS7A (ENSPLOG00000002565) #9	MLF2 (ENSPLOG00000002583) #10	PTMS (ENSPLOG00000002603)	LAG3 (ENSPLOG00000002630) #12	CD4 (ENSPLOG00000002666) #13	GPR162 (ENSPLOG00000002701) #14	P3H3 (ENSPLOG00000002749) #15	GNB3 (ENSPLOG00000002795) #16	CDCA3 (ENSPLOG00000002825) #17	USP5 (ENSPLOG00000002867) #18	TPI1 (ENSPLOG00000002909) ##19	SPSB2 (ENSPLOG00000002952)	LRRC23 (ENSPLOG00000002997) #20	ENO2 (ENSPLOG00000003070) #21	ATN1 (ENSPLOG00000003157) #22	C12orf57 (ENSPLOG00000003182) #23	PTPN6 (ENSPLOG00000003233) #24	PHB2 (ENSPLOG00000003339) #25	EMG1 (ENSPLOG00000003379) #26	LPCAT3 (ENSPLOG00000003407) #27	C1S (ENSPLOG00000003432) #30	C1R (ENSPLOG00000003484) #29	C1RL (ENSPLOG00000003525) #31	RBP5 (ENSPLOG00000003551) #32	CLSTN3 (ENSPLOG00000003585) #33	PEX5 (ENSPLOG00000003652) #34	ENSPLOG00000003948	ENSPLOG00000004116	CD163 (ENSPLOG00000004151)	CLEC4E (ENSPLOG00000004205)
leopard	MODERN SPECIES	45	PIANP (ENSPPRG00000007131) #8	COPS7A (ENSPPRG00000008884) #9	ENSPPRG00000009219	PTMS (ENSPPRG00000009564)	LAG3 (ENSPPRG00000010078) #12	CD4 (ENSPPRG00000011287) #13	ENSPPRG00000012222 #14	P3H3 (ENSPPRG00000012543) #15	GNB3 (ENSPPRG00000013637) #16	CDCA3 (ENSPPRG00000014482) #17	USP5 (ENSPPRG00000020797) #18	TPI1 (ENSPPRG00000023572) ##19	SPSB2 (ENSPPRG00000023327)	LRRC23 (ENSPPRG00000001223) #20	ENO2 (ENSPPRG00000005030) #21	ATN1 (ENSPPRG00000005953) #22	C12orf57 (ENSPPRG00000006711) #23	PTPN6 (ENSPPRG00000008384) #24	ENSPPRG00000008605	PHB2 (ENSPPRG00000011140) #25	EMG1 (ENSPPRG00000012350) #26	LPCAT3 (ENSPPRG00000012613) #27	C1S (ENSPPRG00000013655) #30	C1R (ENSPPRG00000015378) #29	C1RL (ENSPPRG00000020793) #31	RBP5 (ENSPPRG00000022406) #32	CLSTN3 (ENSPPRG00000022969) #33	PEX5 (ENSPPRG00000001418) #34	ENSPPRG00000012515	ENSPPRG00000013375	CD163 (ENSPPRG00000023017)
Tiger	MODERN SPECIES	306	COPS7A (ENSPTIG00000011947) #9	MLF2 (ENSPTIG00000010093) #10	PTMS (ENSPTIG00000009333)	ENSPTIG00000008812	LAG3 (ENSPTIG00000008140) #12	CD4 (ENSPTIG00000006621) #13	ENSPTIG00000005722 #14	P3H3 (ENSPTIG00000003404) #15	GNB3 (ENSPTIG00000000824) #16	CDCA3 (ENSPTIG00000021746) #17	USP5 (ENSPTIG00000020715) #18	TPI1 (ENSPTIG00000020566) ##19	SPSB2 (ENSPTIG00000020204)	LRRC23 (ENSPTIG00000019167) #20	ENO2 (ENSPTIG00000016106) #21	ATN1 (ENSPTIG00000012538) #22	C12orf57 (ENSPTIG00000011489) #23	PTPN6 (ENSPTIG00000008200) #24	PHB2 (ENSPTIG00000002634) #25	EMG1 (ENSPTIG00000000358) #26	LPCAT3 (ENSPTIG00000021406) #27	C1S (ENSPTIG00000021139) #30	C1R (ENSPTIG00000019514) #29	C1RL (ENSPTIG00000018833) #31	RBP5 (ENSPTIG00000018369) #32	CLSTN3 (ENSPTIG00000018008) #33	PEX5 (ENSPTIG00000013475) #34	ENSPTIG00000013283	CD163 (ENSPTIG00000010909)	CLEC4E (ENSPTIG00000009417)	CLEC4D (ENSPTIG00000009303)
Cat	MODERN SPECIES	238	PIANP (ENSFCAG00000024891) #8	COPS7A (ENSFCAG00000043178) #9	ENSFCAG00000032640	PTMS (ENSFCAG00000043997)	LAG3 (ENSFCAG00000006886) #12	CD4 (ENSFCAG00000004269) #13	GPR162 (ENSFCAG00000024524) #14	P3H3 (ENSFCAG00000004270) #15	GNB3 (ENSFCAG00000012371) #16	CDCA3 (ENSFCAG00000004274) #17	USP5 (ENSFCAG00000004276) #18	TPI1 (ENSFCAG00000030274) ##19	SPSB2 (ENSFCAG00000022946)	LRRC23 (ENSFCAG00000004280) #20	ENO2 (ENSFCAG00000004282) #21	ATN1 (ENSFCAG00000026172) #22	CB4H12orf57 (ENSFCAG00000004285) #23	PTPN6 (ENSFCAG00000004287) #24	PHB2 (ENSFCAG00000016328) #25	EMG1 (ENSFCAG00000004288) #26	LPCAT3 (ENSFCAG00000004289) #27	C1S (ENSFCAG00000000175) #30	ENSFCAG00000000177 #29	ENSFCAG00000048167 #29	ENSFCAG00000000179 #31	ENSFCAG00000052347 #31	RBP5 (ENSFCAG00000040547) #32	CLSTN3 (ENSFCAG00000000183) #33	PEX5 (ENSFCAG00000000184) #34	ENSFCAG00000035965	ENSFCAG00000038766
Laurasiatheria_c	ANCESTRAL SPECIES	5	ENSGT00510000049460 #8	ENSGT00940000159873 #9	ENSGT00390000005023.a #10	ENSGT01030000234816	ENSGT01090000259985.b.b.b.a.a.a #12	ENSGT00390000001745 #13	ENSGT00390000017213.A #14	ENSGT00940000159164 #15	ENSGT01000000214413.b.a.b.a #16	ENSGT00390000017343 #17	ENSGT00940000156036 #18	ENSGT00390000013354.d.b ##19	ENSGT01030000234629.A	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242 #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000157473 #30	ENSGT00940000158621 #29	ENSGT00940000162495 #31	ENSGT00940000162526 #32	ENSGT00950000183086.a.b #33	ENSGT00940000156605 #34	ENSGT00940000157963	ENSGT00560000078483	ENSGT00940000164229 #37	ENSGT00940000155987.b
Equus	ANCESTRAL SPECIES	28	ENSGT00510000049460 #8	ENSGT00940000159873 #9	ENSGT00390000005023.a #10	ENSGT01030000234816	ENSGT01090000259985.b.b.b.a.a.a #12	ENSGT00390000001745 #13	ENSGT00390000017213.A #14	ENSGT00940000159164 #15	ENSGT01000000214413.b.a.b.a #16	ENSGT00390000017343 #17	ENSGT00940000156036 #18	ENSGT00390000013354.d.b ##19	ENSGT01030000234629.A	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242 #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000157473 #30	ENSGT00940000158621 #29	ENSGT00940000162495 #31	ENSGT00940000162526 #32	ENSGT00950000183086.a.b #33	ENSGT00940000156605 #34	ENSGT00940000157963	ENSGT00560000078483	ENSGT00940000164229 #37	ENSGT00940000155987.b
Donkey	MODERN SPECIES	14	PIANP (ENSEASG00005016141) #8	COPS7A (ENSEASG00005016138) #9	MLF2 (ENSEASG00005016135) #10	ENSEASG00005016131	LAG3 (ENSEASG00005016128) #12	CD4 (ENSEASG00005016122) #13	GPR162 (ENSEASG00005016119) #14	P3H3 (ENSEASG00005016118) #15	GNB3 (ENSEASG00005016089) #16	CDCA3 (ENSEASG00005016075) #17	USP5 (ENSEASG00005016070) #18	SPSB2 (ENSEASG00005038597)	TPI1 (ENSEASG00005016069) ##19	LRRC23 (ENSEASG00005016067) #20	ENO2 (ENSEASG00005016066) #21	ATN1 (ENSEASG00005016064) #22	C12orf57 (ENSEASG00005025431) #23	PTPN6 (ENSEASG00005016034) #24	PHB2 (ENSEASG00005016019) #25	EMG1 (ENSEASG00005028027) #26	LPCAT3 (ENSEASG00005016016) #27	C1S (ENSEASG00005016014) #30	C1R (ENSEASG00005016013) #29	C1RL (ENSEASG00005036234) #31	RBP5 (ENSEASG00005036449) #32	CLSTN3 (ENSEASG00005016008) #33	PEX5 (ENSEASG00005016004) #34	ENSEASG00005016000	ENSEASG00005026036	CD163L1 (ENSEASG00005015998) #37	ENSEASG00005015996
Horse	MODERN SPECIES	27	ZNF384 (ENSECAG00000009490) #7	PIANP (ENSECAG00000015893) #8	COPS7A (ENSECAG00000015911) #9	MLF2 (ENSECAG00000022587) #10	ENSECAG00000042372	LAG3 (ENSECAG00000002971) #12	CD4 (ENSECAG00000009049) #13	ENSECAG00000054174	P3H3 (ENSECAG00000021815) #15	CDCA3 (ENSECAG00000014517) #17	USP5 (ENSECAG00000014532) #18	SPSB2 (ENSECAG00000033679)	TPI1 (ENSECAG00000015581) ##19	LRRC23 (ENSECAG00000000386) #20	ENO2 (ENSECAG00000007386) #21	ATN1 (ENSECAG00000021403) #22	PTPN6 (ENSECAG00000000465) #24	PHB2 (ENSECAG00000016937) #25	EMG1 (ENSECAG00000022412) #26	LPCAT3 (ENSECAG00000023202) #27	C1S (ENSECAG00000009519) #30	C1R (ENSECAG00000021429) #29	C1RL (ENSECAG00000014251) #31	CLSTN3 (ENSECAG00000020326) #33	RBP5 (ENSECAG00000014695) #32	PEX5 (ENSECAG00000017111) #34	ENSECAG00000046287	ENSECAG00000004670	ENSECAG00000038042	CD163L1 (ENSECAG00000012955) #37	CD163 (ENSECAG00000019111)
Chiroptera	ANCESTRAL SPECIES	4	ENSGT00510000049460 #8	ENSGT00940000159873 #9	ENSGT00390000005023.a #10	ENSGT01030000234816	ENSGT01090000259985.b.b.b.a.a.a #12	ENSGT00390000001745 #13	ENSGT00390000017213.A #14	ENSGT00940000159164 #15	ENSGT01000000214413.b.a.b.a #16	ENSGT00390000017343 #17	ENSGT00940000156036 #18	ENSGT00390000013354.d.b ##19	ENSGT01030000234629.A	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242 #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000157473 #30	ENSGT00940000158621 #29	ENSGT00940000162495 #31	ENSGT00940000162526 #32	ENSGT00950000183086.a.b #33	ENSGT00940000156605 #34	ENSGT00940000157963	ENSGT00940000155987.b	ENSGT00940000160666	ENSGT00940000162400
Microchiroptera	ANCESTRAL SPECIES	8	ENSGT00510000049460 #8	ENSGT00940000159873 #9	ENSGT00390000005023.a #10	ENSGT01030000234816	ENSGT01090000259985.b.b.b.a.a.a #12	ENSGT00390000001745 #13	ENSGT00390000017213.A #14	ENSGT00940000159164 #15	ENSGT01000000214413.b.a.b.a #16	ENSGT00390000017343 #17	ENSGT00940000156036 #18	ENSGT00390000013354.d.b ##19	ENSGT01030000234629.A	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242 #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000157473 #30	ENSGT00940000158621 #29	ENSGT00940000162495 #31	ENSGT00940000162526 #32	ENSGT00950000183086.a.b #33	ENSGT00940000156605 #34	ENSGT00940000157963	ENSGT00940000155987.b	ENSGT00940000160666	ENSGT00940000162400
Greater horseshoe bat	MODERN SPECIES	1	ENSRFEG00010002934	COPS7A (ENSRFEG00010002955) #9	MLF2 (ENSRFEG00010002982) #10	PTMS (ENSRFEG00010003014)	LAG3 (ENSRFEG00010003036) #12	CD4 (ENSRFEG00010003064) #13	GPR162 (ENSRFEG00010003086) #14	P3H3 (ENSRFEG00010003127) #15	GNB3 (ENSRFEG00010003179) #16	CDCA3 (ENSRFEG00010003221) #17	USP5 (ENSRFEG00010003273) #18	TPI1 (ENSRFEG00010003310) ##19	SPSB2 (ENSRFEG00010003333)	LRRC23 (ENSRFEG00010003379) #20	ENO2 (ENSRFEG00010003434) #21	ATN1 (ENSRFEG00010003490) #22	C12orf57 (ENSRFEG00010003532) #23	PTPN6 (ENSRFEG00010003566) #24	PHB2 (ENSRFEG00010003691) #25	EMG1 (ENSRFEG00010003804) #26	LPCAT3 (ENSRFEG00010003822) #27	ENSRFEG00010003865	C1S (ENSRFEG00010003888) #30	C1R (ENSRFEG00010003937) #29	C1RL (ENSRFEG00010003986) #31	RBP5 (ENSRFEG00010004005) #32	CLSTN3 (ENSRFEG00010004041) #33	PEX5 (ENSRFEG00010004095) #34	ENSRFEG00010004181	ENSRFEG00010004197	ENSRFEG00010004205
Microbat	MODERN SPECIES	947	ZNF384 (ENSMLUG00000013771) #7	PIANP (ENSMLUG00000004845) #8	COPS7A (ENSMLUG00000013776) #9	MLF2 (ENSMLUG00000013779) #10	PTMS (ENSMLUG00000013783)	LAG3 (ENSMLUG00000013787) #12	CD4 (ENSMLUG00000024020) #13	GPR162 (ENSMLUG00000022349) #14	P3H3 (ENSMLUG00000006754) #15	GNB3 (ENSMLUG00000006739) #16	CDCA3 (ENSMLUG00000006726) #17	USP5 (ENSMLUG00000013790) #18	TPI1 (ENSMLUG00000024989) ##19	LRRC23 (ENSMLUG00000013800) #20	ENO2 (ENSMLUG00000013803) #21	ENSMLUG00000024674 #22	C12orf57 (ENSMLUG00000001004) #23	PTPN6 (ENSMLUG00000001028) #24	PHB2 (ENSMLUG00000027501) #25	EMG1 (ENSMLUG00000009196) #26	LPCAT3 (ENSMLUG00000009212) #27	C1S (ENSMLUG00000028357) #30	C1R (ENSMLUG00000009230) #29	RBP5 (ENSMLUG00000009297) #32	CLSTN3 (ENSMLUG00000009304) #33	ENSMLUG00000009346 #34	ENSMLUG00000029332	CD163 (ENSMLUG00000013459)	ENSMLUG00000028443	CLEC4E (ENSMLUG00000011581)	CLEC4D (ENSMLUG00000027823)
Megabat	MODERN SPECIES	4010																ATN1 (ENSPVAG00000006017) #22	C12orf57 (ENSPVAG00000006020) #23	PTPN6 (ENSPVAG00000006022) #24	PHB2 (ENSPVAG00000006028) #25	EMG1 (ENSPVAG00000006030) #26	LPCAT3 (ENSPVAG00000006032) #27	C1S (ENSPVAG00000006033) #30
Artiodactyla	ANCESTRAL SPECIES	6	ENSGT00510000049460 #8	ENSGT00940000159873 #9	ENSGT00390000005023.a #10	ENSGT01030000234816	ENSGT01090000259985.b.b.b.a.a.a #12	ENSGT00390000001745 #13	ENSGT00390000017213.A #14	ENSGT00940000159164 #15	ENSGT01000000214413.b.a.b.a #16	ENSGT00390000017343 #17	ENSGT00940000156036 #18	ENSGT00390000013354.d.b ##19	ENSGT01030000234629.A	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242 #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000157473 #30	ENSGT00940000158621 #29	ENSGT00940000162495 #31	ENSGT00940000162526 #32	ENSGT00950000183086.a.b #33	ENSGT00940000156605 #34	ENSGT00940000157963.h	ENSGT00940000157963.g.b.a	ENSGT00560000078483	ENSGT00940000155987.b
Suina	ANCESTRAL SPECIES	4	ENSGT00510000049460 #8	ENSGT00940000159873 #9	ENSGT00390000005023.a #10	ENSGT01030000234816	ENSGT01090000259985.b.b.b.a.a.a #12	ENSGT00390000001745 #13	ENSGT00390000017213.A #14	ENSGT00940000159164 #15	ENSGT01000000214413.b.a.b.a #16	ENSGT00390000017343 #17	ENSGT00940000156036 #18	ENSGT00390000013354.d.b ##19	ENSGT01030000234629.A	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242 #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000157473 #30	ENSGT00940000158621 #29	ENSGT00940000162495 #31	ENSGT00940000162526 #32	ENSGT00950000183086.a.b #33	ENSGT00940000156605 #34	ENSGT00940000157963.h	ENSGT00940000157963.g.b.a	ENSGT00560000078483	ENSGT00940000155987.b
Pig	MODERN SPECIES	13	ENSSSCG00000058867	COPS7A (ENSSSCG00000000691) #9	MLF2 (ENSSSCG00000000690) #10	ENSSSCG00000022176	LAG3 (ENSSSCG00000000688) #12	CD4 (ENSSSCG00000000687) #13	GPR162 (ENSSSCG00000000680) #14	P3H3 (ENSSSCG00000000681) #15	GNB3 (ENSSSCG00000000682) #16	CDCA3 (ENSSSCG00000000683) #17	USP5 (ENSSSCG00000000684) #18	TPI1 (ENSSSCG00000000685) ##19	SPSB2 (ENSSSCG00000025460)	LRRC23 (ENSSSCG00000000679) #20	ENO2 (ENSSSCG00000028373) #21	ATN1 (ENSSSCG00000025117) #22	C12orf57 (ENSSSCG00000040186) #23	PTPN6 (ENSSSCG00000025537) #24	PHB2 (ENSSSCG00000024655) #25	EMG1 (ENSSSCG00000026812) #26	LPCAT3 (ENSSSCG00000027205) #27	C1S (ENSSSCG00000055651) #30	C1R (ENSSSCG00000060530) #29	C1RL (ENSSSCG00000033913) #31	RBP5 (ENSSSCG00000054936) #32	CLSTN3 (ENSSSCG00000000672) #33	PEX5 (ENSSSCG00000025252) #34	ENSSSCG00000034914	ENSSSCG00000042161	ENSSSCG00000058930	CD163 (ENSSSCG00000033146)
Chacoan peccary	MODERN SPECIES	901	COPS7A (ENSCWAG00000004095) #9	MLF2 (ENSCWAG00000004129) #10	PTMS (ENSCWAG00000004167)	LAG3 (ENSCWAG00000004203) #12	ENSCWAG00000004259 #13	ENSCWAG00000004287 #13	GPR162 (ENSCWAG00000004328) #14	P3H3 (ENSCWAG00000004391) #15	GNB3 (ENSCWAG00000004448) #16	CDCA3 (ENSCWAG00000004557) #17	USP5 (ENSCWAG00000004654) #18	TPI1 (ENSCWAG00000004840) ##19	SPSB2 (ENSCWAG00000004877)	LRRC23 (ENSCWAG00000004898) #20	ENO2 (ENSCWAG00000004978) #21	ATN1 (ENSCWAG00000005185) #22	C12orf57 (ENSCWAG00000005210) #23	PTPN6 (ENSCWAG00000005281) #24	PHB2 (ENSCWAG00000005427) #25	EMG1 (ENSCWAG00000005490) #26	LPCAT3 (ENSCWAG00000005512) #27	C1S (ENSCWAG00000005558) #30	C1R (ENSCWAG00000005587) #29	C1RL (ENSCWAG00000005659) #31	RBP5 (ENSCWAG00000005695) #32	ENSCWAG00000005724 #33	PEX5 (ENSCWAG00000005784) #34	ENSCWAG00000006006	ENSCWAG00000006066	ENSCWAG00000006079	ENSCWAG00000006094
Artiodactyla_a	ANCESTRAL SPECIES	5	ENSGT00510000049460 #8	ENSGT00940000159873 #9	ENSGT00390000005023.a #10	ENSGT01030000234816	ENSGT01090000259985.b.b.b.a.a.a #12	ENSGT00390000001745 #13	ENSGT00390000017213.A #14	ENSGT00940000159164 #15	ENSGT01000000214413.b.a.b.a #16	ENSGT00390000017343 #17	ENSGT00940000156036 #18	ENSGT00390000013354.d.b ##19	ENSGT01030000234629.A	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242 #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000157473 #30	ENSGT00940000158621 #29	ENSGT00940000162495 #31	ENSGT00940000162526 #32	ENSGT00950000183086.a.b #33	ENSGT00940000156605 #34	ENSGT00940000157963.g.b.a	ENSGT00560000078483	ENSGT00940000155987.b	ENSGT00940000160666
Artiodactyla_b	ANCESTRAL SPECIES	5	ENSGT00510000049460 #8	ENSGT00940000159873 #9	ENSGT00390000005023.a #10	ENSGT01030000234816	ENSGT01090000259985.b.b.b.a.a.a #12	ENSGT00390000001745 #13	ENSGT00390000017213.A #14	ENSGT00940000159164 #15	ENSGT01000000214413.b.a.b.a #16	ENSGT00390000017343 #17	ENSGT00940000156036 #18	ENSGT00390000013354.d.b ##19	ENSGT01030000234629.A	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242 #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000157473 #30	ENSGT00940000158621 #29	ENSGT00940000162495 #31	ENSGT00940000162526 #32	ENSGT00950000183086.a.b #33	ENSGT00940000156605 #34	ENSGT00940000157963.g.b.a	ENSGT00560000078483	ENSGT00940000155987.b	ENSGT00940000160666
Cetacea	ANCESTRAL SPECIES	8	ENSGT00510000049460 #8	ENSGT00940000159873 #9	ENSGT00390000005023.a #10	ENSGT01030000234816	ENSGT01090000259985.b.b.b.a.a.a #12	ENSGT00390000001745 #13	ENSGT00390000017213.A #14	ENSGT00940000159164 #15	ENSGT01000000214413.b.a.b.a #16	ENSGT00390000017343 #17	ENSGT00940000156036 #18	ENSGT00390000013354.d.b ##19	ENSGT01030000234629.A	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242 #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000157473 #30	ENSGT00940000155436.f	ENSGT00940000158621 #29	ENSGT00940000162495 #31	ENSGT00940000162526 #32	ENSGT00950000183086.a.b #33	ENSGT00940000156605 #34	ENSGT00940000155987.b	ENSGT00940000160666	ENSGT00940000162400
Odontoceti	ANCESTRAL SPECIES	7	ENSGT00510000049460 #8	ENSGT00940000159873 #9	ENSGT00390000005023.a #10	ENSGT01030000234816	ENSGT01090000259985.b.b.b.a.a.a #12	ENSGT00390000001745 #13	ENSGT00390000017213.A #14	ENSGT00940000159164 #15	ENSGT01000000214413.b.a.b.a #16	ENSGT00390000017343 #17	ENSGT00940000156036 #18	ENSGT00390000013354.d.b ##19	ENSGT01030000234629.A	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242 #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000157473 #30	ENSGT00940000155436.f	ENSGT00940000158621 #29	ENSGT00940000162495 #31	ENSGT00940000162526 #32	ENSGT00950000183086.a.b #33	ENSGT00940000156605 #34	ENSGT00940000155987.b	ENSGT00940000160666	ENSGT00940000162400
Odontoceti_a	ANCESTRAL SPECIES	6	ENSGT00510000049460 #8	ENSGT00940000159873 #9	ENSGT00390000005023.a #10	ENSGT01030000234816	ENSGT01090000259985.b.b.b.a.a.a #12	ENSGT00390000001745 #13	ENSGT00390000017213.A #14	ENSGT00940000159164 #15	ENSGT01000000214413.b.a.b.a #16	ENSGT00390000017343 #17	ENSGT00940000156036 #18	ENSGT00390000013354.d.b ##19	ENSGT01030000234629.A	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242 #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000157473 #30	ENSGT00940000158621 #29	ENSGT00940000162495 #31	ENSGT00940000162526 #32	ENSGT00950000183086.a.b #33	ENSGT00940000156605 #34	ENSGT00940000155987.b	ENSGT00940000160666	ENSGT00940000162400	ENSGT00390000009359.a
Odontoceti_b	ANCESTRAL SPECIES	7	ENSGT00940000159873 #9	ENSGT00390000005023.a #10	ENSGT01030000234816	ENSGT01090000259985.b.b.b.a.a.a #12	ENSGT00390000001745 #13	ENSGT00390000017213.A #14	ENSGT00940000159164 #15	ENSGT01000000214413.b.a.b.a #16	ENSGT00390000017343 #17	ENSGT00940000156036 #18	ENSGT00390000013354.d.b ##19	ENSGT01030000234629.A	ENSGT00940000153430.a.b.j	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242 #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000157473 #30	ENSGT00940000158621 #29	ENSGT00940000162495 #31	ENSGT00940000162526 #32	ENSGT00950000183086.a.b #33	ENSGT00940000156605 #34	ENSGT00940000155987.b	ENSGT00940000160666	ENSGT00940000162400	ENSGT00390000009359.a
Monodontidae	ANCESTRAL SPECIES	6	ENSGT00940000159873 #9	ENSGT00390000005023.a #10	ENSGT01030000234816	ENSGT01090000259985.b.b.b.a.a.a #12	ENSGT00390000001745 #13	ENSGT00390000017213.A #14	ENSGT00940000159164 #15	ENSGT01000000214413.b.a.b.a #16	ENSGT00390000017343 #17	ENSGT00940000156036 #18	ENSGT00390000013354.d.b ##19	ENSGT01030000234629.A	ENSGT00940000153430.a.b.j	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242 #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000157473 #30	ENSGT00940000158621 #29	ENSGT00940000162495 #31	ENSGT00940000162526 #32	ENSGT00950000183086.a.b #33	ENSGT00940000156605 #34	ENSGT00940000155987.b	ENSGT00940000160666	ENSGT00940000162400	ENSGT00390000009359.a
Narwhal	MODERN SPECIES	313	COPS7A (ENSMMNG00015015318) #9	MLF2 (ENSMMNG00015015337) #10	PTMS (ENSMMNG00015015353)	LAG3 (ENSMMNG00015015366) #12	CD4 (ENSMMNG00015015391) #13	GPR162 (ENSMMNG00015015414) #14	P3H3 (ENSMMNG00015015434) #15	GNB3 (ENSMMNG00015015448) #16	CDCA3 (ENSMMNG00015015481) #17	USP5 (ENSMMNG00015015510) #18	TPI1 (ENSMMNG00015015764) ##19	SPSB2 (ENSMMNG00015015797)	ENSMMNG00015015832	LRRC23 (ENSMMNG00015015931) #20	ENO2 (ENSMMNG00015016116) #21	ATN1 (ENSMMNG00015016194) #22	C12orf57 (ENSMMNG00015016278) #23	PTPN6 (ENSMMNG00015016375) #24	PHB2 (ENSMMNG00015016550) #25	EMG1 (ENSMMNG00015016611) #26	LPCAT3 (ENSMMNG00015016648) #27	C1S (ENSMMNG00015016694) #30	C1R (ENSMMNG00015016776) #29	C1RL (ENSMMNG00015016894) #31	ENSMMNG00015016913 #32	CLSTN3 (ENSMMNG00015016951) #33	PEX5 (ENSMMNG00015016996) #34	CD163 (ENSMMNG00015017218)	CLEC4E (ENSMMNG00015017338)	ENSMMNG00015017373	NECAP1 (ENSMMNG00015017410)
Beluga whale	MODERN SPECIES	23	MLF2 (ENSDLEG00000015348) #10	LAG3 (ENSDLEG00000015366) #12	CD4 (ENSDLEG00000015440) #13	GPR162 (ENSDLEG00000015459) #14	P3H3 (ENSDLEG00000015481) #15	ENSDLEG00000015588 #16	ENSDLEG00000015552 #16	ENSDLEG00000015607 #17	ENSDLEG00000015616 #17	USP5 (ENSDLEG00000015635) #18	TPI1 (ENSDLEG00000015660) ##19	SPSB2 (ENSDLEG00000015683)	ENSDLEG00000015696	LRRC23 (ENSDLEG00000015705) #20	ENO2 (ENSDLEG00000015736) #21	ATN1 (ENSDLEG00000015753) #22	CUNH12orf57 (ENSDLEG00000015776) #23	PTPN6 (ENSDLEG00000015801) #24	ENSDLEG00000015827 #25	EMG1 (ENSDLEG00000015851) #26	LPCAT3 (ENSDLEG00000015866) #27	C1S (ENSDLEG00000015889) #30	C1R (ENSDLEG00000015916) #29	C1RL (ENSDLEG00000015962) #31	CLSTN3 (ENSDLEG00000015994) #33	PEX5 (ENSDLEG00000016025) #34	CD163 (ENSDLEG00000016084)	CLEC4E (ENSDLEG00000016164)	ENSDLEG00000016176	NECAP1 (ENSDLEG00000016184)	C3AR1 (ENSDLEG00000016200)
Vaquita	MODERN SPECIES	1	COPS7A (ENSPSNG00000005746) #9	MLF2 (ENSPSNG00000005707) #10	PTMS (ENSPSNG00000005689)	LAG3 (ENSPSNG00000005663) #12	CD4 (ENSPSNG00000005617) #13	GPR162 (ENSPSNG00000005573) #14	P3H3 (ENSPSNG00000005493) #15	GNB3 (ENSPSNG00000005442) #16	ENSPSNG00000005389 #17	USP5 (ENSPSNG00000005317) #18	TPI1 (ENSPSNG00000005263) ##19	SPSB2 (ENSPSNG00000005239)	ENSPSNG00000005219	LRRC23 (ENSPSNG00000005175) #20	ENO2 (ENSPSNG00000005075) #21	ATN1 (ENSPSNG00000005006) #22	C12orf57 (ENSPSNG00000004951) #23	PTPN6 (ENSPSNG00000004895) #24	PHB2 (ENSPSNG00000004823) #25	EMG1 (ENSPSNG00000004766) #26	LPCAT3 (ENSPSNG00000004738) #27	C1S (ENSPSNG00000004705) #30	C1R (ENSPSNG00000004652) #29	C1RL (ENSPSNG00000004616) #31	ENSPSNG00000004595 #32	CLSTN3 (ENSPSNG00000004552) #33	PEX5 (ENSPSNG00000004416) #34	CD163 (ENSPSNG00000004288)	CLEC4E (ENSPSNG00000004210)	NECAP1 (ENSPSNG00000011016)	C3AR1 (ENSPSNG00000010984)
Dolphin	MODERN SPECIES	3058						CD4 (ENSTTRG00000004621) #13	GPR162 (ENSTTRG00000021380) #14	P3H3 (ENSTTRG00000004668) #15	GNB3 (ENSTTRG00000004702) #16	CDCA3 (ENSTTRG00000004721) #17	USP5 (ENSTTRG00000004729) #18	TPI1 (ENSTTRG00000004742) ##19	SPSB2 (ENSTTRG00000004755)	LRRC23 (ENSTTRG00000004761) #20	ENO2 (ENSTTRG00000004771) #21	ATN1 (ENSTTRG00000004784) #22	CUNH12orf57 (ENSTTRG00000004797) #23	ENSTTRG00000004801 #24	PHB2 (ENSTTRG00000004806) #25	EMG1 (ENSTTRG00000004810) #26	LPCAT3 (ENSTTRG00000004813) #27	C1S (ENSTTRG00000004816) #30	C1R (ENSTTRG00000004820) #29	C1RL (ENSTTRG00000004821) #31	RBP5 (ENSTTRG00000004823) #32	CLSTN3 (ENSTTRG00000004824) #33	PEX5 (ENSTTRG00000004827) #34
Sperm whale	MODERN SPECIES	72							GPR162 (ENSPCTG00005018455) #14	P3H3 (ENSPCTG00005018558) #15	GNB3 (ENSPCTG00005018716) #16	CDCA3 (ENSPCTG00005018866) #17	USP5 (ENSPCTG00005018965) #18	TPI1 (ENSPCTG00005019035) ##19	SPSB2 (ENSPCTG00005019095)	LRRC23 (ENSPCTG00005019122) #20	ENO2 (ENSPCTG00005019273) #21	ATN1 (ENSPCTG00005019407) #22	CUNH12orf57 (ENSPCTG00005019445) #23	PTPN6 (ENSPCTG00005019528) #24	PHB2 (ENSPCTG00005019787) #25	EMG1 (ENSPCTG00005019876) #26	LPCAT3 (ENSPCTG00005019898) #27
Blue whale	MODERN SPECIES	1	PIANP (ENSBMSG00010014495) #8	COPS7A (ENSBMSG00010014553) #9	MLF2 (ENSBMSG00010014597) #10	PTMS (ENSBMSG00010014712)	LAG3 (ENSBMSG00010014753) #12	CD4 (ENSBMSG00010014905) #13	GPR162 (ENSBMSG00010014987) #14	P3H3 (ENSBMSG00010015046) #15	GNB3 (ENSBMSG00010015104) #16	CDCA3 (ENSBMSG00010015169) #17	USP5 (ENSBMSG00010015257) #18	TPI1 (ENSBMSG00010015329) ##19	SPSB2 (ENSBMSG00010015375)	LRRC23 (ENSBMSG00010015406) #20	ENO2 (ENSBMSG00010015498) #21	ATN1 (ENSBMSG00010015747) #22	C12orf57 (ENSBMSG00010015774) #23	PTPN6 (ENSBMSG00010015835) #24	PHB2 (ENSBMSG00010015977) #25	EMG1 (ENSBMSG00010016055) #26	LPCAT3 (ENSBMSG00010016087) #27	C1S (ENSBMSG00010016127) #30	ENSBMSG00010016157	C1R (ENSBMSG00010016210) #29	C1RL (ENSBMSG00010016364) #31	RBP5 (ENSBMSG00010016389) #32	CLSTN3 (ENSBMSG00010016426) #33	PEX5 (ENSBMSG00010016544) #34	ENSBMSG00010016794	ENSBMSG00010016887	CD163 (ENSBMSG00010017704)
Pecora	ANCESTRAL SPECIES	3	ENSGT00510000049460 #8	ENSGT00940000159873 #9	ENSGT00390000005023.a #10	ENSGT01030000234816	ENSGT01090000259985.b.b.b.a.a.a #12	ENSGT00390000001745 #13	ENSGT00390000017213.A #14	ENSGT00940000159164 #15	ENSGT01000000214413.b.a.b.a #16	ENSGT00390000017343 #17	ENSGT00940000156036 #18	ENSGT00390000013354.d.b ##19	ENSGT01030000234629.A	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242 #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000157473 #30	ENSGT00940000158621 #29	ENSGT00940000162495 #31	ENSGT00940000162526 #32	ENSGT00950000183086.a.b #33	ENSGT00940000156605 #34	ENSGT00940000157963.g.b.a.c.a.b	ENSGT00940000157963.g.b.a.c.a.a.a.b	ENSGT00560000078483	ENSGT00940000155987.b
Yarkand deer	MODERN SPECIES	14	PIANP (ENSCHYG00000024684) #8	COPS7A (ENSCHYG00000024633) #9	MLF2 (ENSCHYG00000024596) #10	ENSCHYG00000024584	LAG3 (ENSCHYG00000024522) #12	CD4 (ENSCHYG00000024477) #13	GPR162 (ENSCHYG00000024446) #14	P3H3 (ENSCHYG00000024241) #15	GNB3 (ENSCHYG00000024150) #16	CDCA3 (ENSCHYG00000024020) #17	USP5 (ENSCHYG00000023817) #18	TPI1 (ENSCHYG00000023734) ##19	SPSB2 (ENSCHYG00000023711)	LRRC23 (ENSCHYG00000023669) #20	ENO2 (ENSCHYG00000023562) #21	ATN1 (ENSCHYG00000023488) #22	C12orf57 (ENSCHYG00000023367) #23	PTPN6 (ENSCHYG00000023189) #24	ENSCHYG00000022916 #25	EMG1 (ENSCHYG00000022863) #26	LPCAT3 (ENSCHYG00000022709) #27	C1S (ENSCHYG00000022602) #30	ENSCHYG00000022582	C1R (ENSCHYG00000022253) #29	C1RL (ENSCHYG00000022163) #31	RBP5 (ENSCHYG00000022108) #32	CLSTN3 (ENSCHYG00000021837) #33	PEX5 (ENSCHYG00000021374) #34	ENSCHYG00000021319	ENSCHYG00000020146	ENSCHYG00000019724
Percora_a	ANCESTRAL SPECIES	3	ENSGT00510000049460 #8	ENSGT00940000159873 #9	ENSGT00390000005023.a #10	ENSGT01030000234816	ENSGT01090000259985.b.b.b.a.a.a #12	ENSGT00390000001745 #13	ENSGT00390000017213.A #14	ENSGT00940000159164 #15	ENSGT01000000214413.b.a.b.a #16	ENSGT00390000017343 #17	ENSGT00940000156036 #18	ENSGT00390000013354.d.b ##19	ENSGT01030000234629.A	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242 #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000157473 #30	ENSGT00940000158621 #29	ENSGT00940000162495 #31	ENSGT00940000162526 #32	ENSGT00950000183086.a.b #33	ENSGT00940000156605 #34	ENSGT00940000158463.m	ENSGT00940000157963.g.b.a.c.a.a.a.b	ENSGT00560000078483	ENSGT00940000155987.b
Siberian musk deer	MODERN SPECIES	1247	PIANP (ENSMMSG00000021673) #8	COPS7A (ENSMMSG00000021708) #9	MLF2 (ENSMMSG00000021729) #10	PTMS (ENSMMSG00000021756)	LAG3 (ENSMMSG00000021775) #12	CD4 (ENSMMSG00000021846) #13	GPR162 (ENSMMSG00000021887) #14	P3H3 (ENSMMSG00000021912) #15	GNB3 (ENSMMSG00000021946) #16	CDCA3 (ENSMMSG00000021980) #17	USP5 (ENSMMSG00000022009) #18	TPI1 (ENSMMSG00000022032) ##19	SPSB2 (ENSMMSG00000022073)	LRRC23 (ENSMMSG00000022095) #20	ENO2 (ENSMMSG00000022127) #21	ATN1 (ENSMMSG00000022203) #22	C12orf57 (ENSMMSG00000022213) #23	PTPN6 (ENSMMSG00000020364) #24	PHB2 (ENSMMSG00000020421) #25	EMG1 (ENSMMSG00000020458) #26	LPCAT3 (ENSMMSG00000020493) #27	C1S (ENSMMSG00000020518) #30	C1R (ENSMMSG00000020571) #29	C1RL (ENSMMSG00000020657) #31	RBP5 (ENSMMSG00000020698) #32	CLSTN3 (ENSMMSG00000020725) #33	PEX5 (ENSMMSG00000020788) #34	ENSMMSG00000021073	ENSMMSG00000021129	ENSMMSG00000021653	ENSMMSG00000022481
Bovidae	ANCESTRAL SPECIES	3	ENSGT00510000049460 #8	ENSGT00940000159873 #9	ENSGT00390000005023.a #10	ENSGT01030000234816	ENSGT01090000259985.b.b.b.a.a.a #12	ENSGT00390000001745 #13	ENSGT00390000017213.A #14	ENSGT00940000159164 #15	ENSGT01000000214413.b.a.b.a #16	ENSGT00390000017343 #17	ENSGT00940000156036 #18	ENSGT00390000013354.d.b ##19	ENSGT01030000234629.A	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242 #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000157473 #30	ENSGT00940000158621 #29	ENSGT00940000162495 #31	ENSGT00940000162526 #32	ENSGT00950000183086.a.b #33	ENSGT00940000156605 #34	ENSGT00940000158463.m	ENSGT00940000157963.g.b.a.c.a.a.a.b	ENSGT00560000078483	ENSGT00940000155987.b
Caprinae	ANCESTRAL SPECIES		ENSGT00510000049460 #8	ENSGT00940000159873 #9	ENSGT00390000005023.a #10	ENSGT01030000234816	ENSGT01090000259985.b.b.b.a.a.a #12	ENSGT00390000001745 #13	ENSGT00390000017213.A #14	ENSGT00940000159164 #15	ENSGT01000000214413.b.a.b.a #16	ENSGT00390000017343 #17	ENSGT00940000156036 #18	ENSGT00390000013354.d.b.b ##19	ENSGT01030000234629.A	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242 #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000157473 #30	ENSGT00940000158621 #29	ENSGT00940000162495 #31	ENSGT00940000162526 #32	ENSGT00950000183086.a.b #33	ENSGT00940000156605 #34	ENSGT00940000158463.m	ENSGT00940000157963.g.b.a.c.a.b.b.a	ENSGT00940000157963.g.b.a.d.a.b.a	ENSGT00940000157963.g.b.a.d.b.a
Rambouillet Sheep	MODERN SPECIES	19	PIANP (ENSOARG00020004619) #8	COPS7A (ENSOARG00020004603) #9	MLF2 (ENSOARG00020004578) #10	PTMS (ENSOARG00020004551)	LAG3 (ENSOARG00020004514) #12	CD4 (ENSOARG00020004460) #13	GPR162 (ENSOARG00020004446) #14	P3H3 (ENSOARG00020023431) #15	GNB3 (ENSOARG00020023409) #16	CDCA3 (ENSOARG00020023351) #17	USP5 (ENSOARG00020023279) #18	TPI1 (ENSOARG00020023229) ##19	SPSB2 (ENSOARG00020023215)	LRRC23 (ENSOARG00020023167) #20	ENO2 (ENSOARG00020022863) #21	ATN1 (ENSOARG00020022792) #22	C12orf57 (ENSOARG00020022731) #23	PTPN6 (ENSOARG00020022658) #24	PHB2 (ENSOARG00020022553) #25	EMG1 (ENSOARG00020022522) #26	LPCAT3 (ENSOARG00020022475) #27	C1S (ENSOARG00020022422) #30	C1R (ENSOARG00020022383) #29	ENSOARG00020022365	RBP5 (ENSOARG00020022272) #32	CLSTN3 (ENSOARG00020022163) #33	PEX5 (ENSOARG00020021853) #34	ENSOARG00020021773	ENSOARG00020021654	ENSOARG00020020451	ENSOARG00020017398
Goat	MODERN SPECIES	24	PIANP (ENSCHIG00000017399) #8	COPS7A (ENSCHIG00000013096) #9	MLF2 (ENSCHIG00000014233) #10	LAG3 (ENSCHIG00000012648) #12	CD4 (ENSCHIG00000010446) #13	GPR162 (ENSCHIG00000019485) #14	P3H3 (ENSCHIG00000000989) #15	GNB3 (ENSCHIG00000012696) #16	CDCA3 (ENSCHIG00000013074) #17	USP5 (ENSCHIG00000012356) #18	ENSCHIG00000016031 ##19	SPSB2 (ENSCHIG00000022848)	LRRC23 (ENSCHIG00000011691) #20	ENO2 (ENSCHIG00000018278) #21	C12orf57 (ENSCHIG00000020812) #23	ATN1 (ENSCHIG00000013433) #22	PTPN6 (ENSCHIG00000019949) #24	PHB2 (ENSCHIG00000017171) #25	EMG1 (ENSCHIG00000003188) #26	LPCAT3 (ENSCHIG00000014795) #27	C1S (ENSCHIG00000012570) #30	C1R (ENSCHIG00000023479) #29	C1RL (ENSCHIG00000013828) #31	RBP5 (ENSCHIG00000012769) #32	CLSTN3 (ENSCHIG00000010522) #33	ENSCHIG00000016189	PEX5 (ENSCHIG00000014978) #34	ENSCHIG00000012940	ENSCHIG00000008296	ENSCHIG00000012795	ENSCHIG00000015136
Bovinae	ANCESTRAL SPECIES	10	ENSGT00510000049460 #8	ENSGT00940000159873 #9	ENSGT00390000005023.a #10	ENSGT01030000234816	ENSGT01090000259985.b.b.b.a.a.a #12	ENSGT00390000001745 #13	ENSGT00390000017213.A #14	ENSGT00940000159164 #15	ENSGT01000000214413.b.a.b.a #16	ENSGT00390000017343 #17	ENSGT00940000156036 #18	ENSGT00390000013354.d.b ##19	ENSGT01030000234629.A	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242 #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000157473 #30	ENSGT00940000158621 #29	ENSGT00940000162495 #31	ENSGT00940000162526 #32	ENSGT00950000183086.a.b #33	ENSGT00940000156605 #34	ENSGT00940000157963.g.b.a.c.a.b	ENSGT00940000157963.g.b.a.c.a.a.a.b	ENSGT00560000078483	ENSGT00940000155987.b
Bos	ANCESTRAL SPECIES	2	ENSGT00510000049460 #8	ENSGT00940000159873 #9	ENSGT00390000005023.a #10	ENSGT01030000234816	ENSGT01090000259985.b.b.b.a.a.a #12	ENSGT00390000001745 #13	ENSGT00390000017213.A #14	ENSGT00940000159164 #15	ENSGT01000000214413.b.a.b.a #16	ENSGT00390000017343 #17	ENSGT00940000156036 #18	ENSGT00390000013354.d.b ##19	ENSGT01030000234629.A	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242 #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000157473 #30	ENSGT00940000158621.o.a #29	ENSGT00940000158621.o.b #29	ENSGT00940000162526 #32	ENSGT00950000183086.a.b #33	ENSGT00940000156605 #34	ENSGT00940000157963.g.b.a.c.a.b	ENSGT00940000157963.g.b.a.c.a.a.a.a	ENSGT00940000157963.g.b.a.d.a.b.d	ENSGT00940000157963.g.b.a.d.b.c
Bos_a	ANCESTRAL SPECIES	24	ENSGT00510000049460 #8	ENSGT00940000159873 #9	ENSGT00390000005023.a #10	ENSGT01030000234816	ENSGT01090000259985.b.b.b.a.a.a #12	ENSGT00390000001745 #13	ENSGT00390000017213.A #14	ENSGT00940000159164 #15	ENSGT01000000214413.b.a.b.a #16	ENSGT00390000017343 #17	ENSGT00940000156036 #18	ENSGT00390000013354.d.b ##19	ENSGT01030000234629.A	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242 #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000157473 #30	ENSGT00940000158621.o.a #29
Wild yak	MODERN SPECIES	2103	PIANP (ENSBMUG00000009210) #8	COPS7A (ENSBMUG00000009260) #9	MLF2 (ENSBMUG00000009291) #10	ENSBMUG00000009305	LAG3 (ENSBMUG00000009333) #12	CD4 (ENSBMUG00000009372) #13	ENSBMUG00000009392 #14	P3H3 (ENSBMUG00000009413) #15	GNB3 (ENSBMUG00000009430) #16	CDCA3 (ENSBMUG00000009485) #17	USP5 (ENSBMUG00000009512) #18	TPI1 (ENSBMUG00000009525) ##19	SPSB2 (ENSBMUG00000009535)	LRRC23 (ENSBMUG00000009544) #20	ENO2 (ENSBMUG00000009582) #21	ATN1 (ENSBMUG00000009661) #22	C12orf57 (ENSBMUG00000009683) #23	PTPN6 (ENSBMUG00000009724) #24	PHB2 (ENSBMUG00000009812) #25	EMG1 (ENSBMUG00000009841) #26	LPCAT3 (ENSBMUG00000009851) #27	C1S (ENSBMUG00000009867) #30	ENSBMUG00000009901 #29
Domestic yak	MODERN SPECIES	24	PIANP (ENSBGRG00000000449) #8	COPS7A (ENSBGRG00000000425) #9	MLF2 (ENSBGRG00000000386) #10	PTMS (ENSBGRG00000000358)	LAG 3 (ENSBGRG00000000330) #12	CD4 (ENSBGRG00000000298) #13	GPR162 (ENSBGRG00000022613) #14	P3H3 (ENSBGRG00000022465) #15	GNB3 (ENSBGRG00000022348) #16	CDCA3 (ENSBGRG00000022253) #17	USP5 (ENSBGRG00000022011) #18	TPI1 (ENSBGRG00000021836) ##19	SPSB2 (ENSBGRG00000021787)	LRRC23 (ENSBGRG00000021691) #20	ENO2 (ENSBGRG00000021376) #21	ATN1 (ENSBGRG00000021256) #22	C12orf57 (ENSBGRG00000021156) #23	PTPN6 (ENSBGRG00000020914) #24	PHB2 (ENSBGRG00000020632) #25	ENSBGRG00000020598 #26	ENSBGRG00000020557 #26	LPCAT3 (ENSBGRG00000020472) #27	C1S (ENSBGRG00000020327) #30	ENSBGRG00000020276 #29	ENSBGRG00000020256	ENSBGRG00000019561	ENSBGRG00000019397	ENSBGRG00000017969	ENSBGRG00000015663	ENSBGRG00000013995	ENSBGRG00000013903
Bos_b	ANCESTRAL SPECIES	30	ENSGT00510000049460 #8	ENSGT00940000159873 #9	ENSGT00390000005023.a #10	ENSGT01030000234816	ENSGT01090000259985.b.b.b.a.a.a #12	ENSGT00390000001745 #13	ENSGT00390000017213.A #14	ENSGT00940000159164 #15	ENSGT01000000214413.b.a.b.a #16	ENSGT00390000017343 #17	ENSGT00940000156036 #18	ENSGT00390000013354.d.b ##19	ENSGT01030000234629.A	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242 #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000157473 #30	ENSGT00940000158621.o.a #29	ENSGT00940000158621.o.b #29	ENSGT00940000162526 #32	ENSGT00950000183086.a.b #33	ENSGT00940000156605 #34	ENSGT00940000157963.g.b.a.c.a.b.c
Hybrid Bos Indicus	MODERN SPECIES	24	COPS7A (ENSBIXG00005019728) #9	ENSBIXG00005019647	MLF2 (ENSBIXG00005019632) #10	PTMS (ENSBIXG00005019569)	LAG3 (ENSBIXG00005019525) #12	CD4 (ENSBIXG00005019448) #13	GPR162 (ENSBIXG00005003161) #14	P3H3 (ENSBIXG00005019389) #15	GNB3 (ENSBIXG00005003143) #16	CDCA3 (ENSBIXG00005019324) #17	USP5 (ENSBIXG00005019301) #18	TPI1 (ENSBIXG00005019261) ##19	SPSB2 (ENSBIXG00005019228)	LRRC23 (ENSBIXG00005006028) #20	ENO2 (ENSBIXG00005019163) #21	ATN1 (ENSBIXG00005019104) #22	C12orf57 (ENSBIXG00005019072) #23	PTPN6 (ENSBIXG00005019039) #24	PHB2 (ENSBIXG00005018962) #25	EMG1 (ENSBIXG00005018929) #26	LPCAT3 (ENSBIXG00005018911) #27	C1S (ENSBIXG00005018867) #30	ENSBIXG00005018766 #29	ENSBIXG00005018687 #29	RBP5 (ENSBIXG00005003024) #32	CLSTN3 (ENSBIXG00005018641) #33	PEX5 (ENSBIXG00005018586) #34	ENSBIXG00005018398	ENSBIXG00005018133	ENSBIXG00005002924	ENSBIXG00005017933
Cow	MODERN SPECIES	24	COPS7A (ENSBTAG00000011111) #9	MLF2 (ENSBTAG00000014931) #10	PTMS (ENSBTAG00000018451)	LAG3 (ENSBTAG00000034295) #12	ENSBTAG00000051680	CD4 (ENSBTAG00000003255) #13	GPR162 (ENSBTAG00000034385) #14	P3H3 (ENSBTAG00000003598) #15	GNB3 (ENSBTAG00000016043) #16	CDCA3 (ENSBTAG00000019777) #17	USP5 (ENSBTAG00000019780) #18	TPI1 (ENSBTAG00000019782) ##19	SPSB2 (ENSBTAG00000053346)	LRRC23 (ENSBTAG00000011273) #20	ENO2 (ENSBTAG00000011274) #21	ATN1 (ENSBTAG00000018828) #22	PTPN6 (ENSBTAG00000020294) #24	PHB2 (ENSBTAG00000013123) #25	EMG1 (ENSBTAG00000013126) #26	LPCAT3 (ENSBTAG00000013127) #27	C1S (ENSBTAG00000004840) #30	C1R (ENSBTAG00000008612) #29	ENSBTAG00000037743 #29	C1RL (ENSBTAG00000016204) #31	RBP5 (ENSBTAG00000008127) #32	CLSTN3 (ENSBTAG00000008129) #33	PEX5 (ENSBTAG00000010490) #34	CD163L1 (ENSBTAG00000054245)	ENSBTAG00000050749	ENSBTAG00000050301	ENSBTAG00000039256
American bison	MODERN SPECIES	3130	ENSBBBG00000013164 #9	ENSBBBG00000013172	MLF2 (ENSBBBG00000013185) #10	PTMS (ENSBBBG00000013194)	LAG3 (ENSBBBG00000001644) #12	CD4 (ENSBBBG00000013265) #13	ENSBBBG00000002685 #14	P3H3 (ENSBBBG00000013282) #15	GNB3 (ENSBBBG00000001619) #16	CDCA3 (ENSBBBG00000013314) #17	USP5 (ENSBBBG00000013362) #18	TPI1 (ENSBBBG00000013389) ##19	SPSB2 (ENSBBBG00000001570)	LRRC23 (ENSBBBG00000001562) #20	ENO2 (ENSBBBG00000013486) #21	ATN1 (ENSBBBG00000013523) #22	C12orf57 (ENSBBBG00000013536) #23	PTPN6 (ENSBBBG00000013574) #24	PHB2 (ENSBBBG00000013615) #25	EMG1 (ENSBBBG00000013624) #26	LPCAT3 (ENSBBBG00000013637) #27	C1S (ENSBBBG00000002855) #30	C1R (ENSBBBG00000013692) #29
Camelidae	ANCESTRAL SPECIES	17	ENSGT00510000049460 #8	ENSGT00940000159873 #9	ENSGT00390000005023.a #10	ENSGT01030000234816	ENSGT01090000259985.b.b.b.a.a.a #12	ENSGT00390000001745 #13	ENSGT00390000017213.A #14	ENSGT00940000159164 #15	ENSGT01000000214413.b.a.b.a #16	ENSGT00390000017343 #17	ENSGT00940000156036 #18	ENSGT00390000013354.d.b ##19	ENSGT01030000234629.A	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242 #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a #25	ENSGT00390000000305 #26	ENSGT00940000157473 #30	ENSGT00940000158621 #29	ENSGT00940000162495 #31	ENSGT00940000162526 #32	ENSGT00950000183086.a.b #33	ENSGT00940000156605 #34	ENSGT00940000157963.h	ENSGT00940000155987.b	ENSGT00940000160666	ENSGT00940000162400	ENSGT00390000009359.a
Arabian camel	MODERN SPECIES	27	PIANP (ENSCDRG00005018699) #8	COPS7A (ENSCDRG00005018742) #9	MLF2 (ENSCDRG00005018784) #10	PTMS (ENSCDRG00005018819)	LAG3 (ENSCDRG00005018858) #12	CD4 (ENSCDRG00005018894) #13	GPR162 (ENSCDRG00005018926) #14	P3H3 (ENSCDRG00005018977) #15	GNB3 (ENSCDRG00005019041) #16	CDCA3 (ENSCDRG00005019067) #17	USP5 (ENSCDRG00005019114) #18	TPI1 (ENSCDRG00005019144) ##19	ENSCDRG00005019197	LRRC23 (ENSCDRG00005019257) #20	ENO2 (ENSCDRG00005019317) #21	ATN1 (ENSCDRG00005019382) #22	ENSCDRG00005019400 #23	PTPN6 (ENSCDRG00005019443) #24	PHB2 (ENSCDRG00005019555) #25	EMG1 (ENSCDRG00005019592) #26	C1S (ENSCDRG00005019604) #30	C1R (ENSCDRG00005019633) #29	C1RL (ENSCDRG00005019656) #31	RBP5 (ENSCDRG00005019669) #32	CLSTN3 (ENSCDRG00005019691) #33	PEX5 (ENSCDRG00005019720) #34	ENSCDRG00005020025	ENSCDRG00005021278	CD163 (ENSCDRG00005021289)	CLEC4E (ENSCDRG00005021309)	ENSCDRG00005021317
Alpaca	MODERN SPECIES	3568																ENSVPAG00000005790 #22
Atlantogenata	ANCESTRAL SPECIES	5	ENSGT00510000049460 #8	ENSGT00940000159873 #9	ENSGT00390000005023.a #10	ENSGT01030000234816	ENSGT01090000259985.b.b.b.a.a.a #12	ENSGT00390000001745 #13	ENSGT00390000017213.A #14	ENSGT00940000159164 #15	ENSGT01000000214413.b.a.b.a #16	ENSGT00390000017343 #17	ENSGT00940000156036 #18	ENSGT00390000013354.d #19	ENSGT01030000234629.A	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242 #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000157473 #30	ENSGT00940000158621 #29	ENSGT00940000162495 #31	ENSGT00940000162526 #32	ENSGT00950000183086.a.b #33	ENSGT00940000156605 #34	ENSGT00940000157963.b	ENSGT00940000157963.a	ENSGT00940000164229 #37	ENSGT00940000155987.b
Afrotheria	ANCESTRAL SPECIES	11	ENSGT00940000156904 #7	ENSGT00510000049460 #8	ENSGT00940000159873 #9	ENSGT00390000005023.a #10	ENSGT01090000259985.b.b.b.a.a.a #12	ENSGT00390000001745 #13	ENSGT00390000017213.A #14	ENSGT00940000159164 #15	ENSGT01000000214413.b.a.b.a #16	ENSGT00390000017343.a #17	ENSGT00940000156036 #18	ENSGT00390000013354.d #19	ENSGT01030000234629.A	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242 #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000157473 #30	ENSGT00940000158621 #29	ENSGT00940000162526 #32	ENSGT00950000183086.a.b #33	ENSGT00940000156605 #34	ENSGT00940000157963.b	ENSGT00940000157963.a	ENSGT00940000164229 #37	ENSGT00940000155987.b	ENSGT00940000160666
Afrotheria_a	ANCESTRAL SPECIES	11	ENSGT00940000156904 #7	ENSGT00510000049460 #8	ENSGT00940000159873 #9	ENSGT00390000005023.a #10	ENSGT01090000259985.b.b.b.a.a.a #12	ENSGT00390000001745 #13	ENSGT00390000017213.A #14	ENSGT00940000159164 #15	ENSGT01000000214413.b.a.b.a #16	ENSGT00390000017343.a #17	ENSGT00940000156036 #18	ENSGT00390000013354.d #19	ENSGT01030000234629.A	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242 #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000158621 #29	ENSGT00940000162526 #32	ENSGT00950000183086.a.b #33	ENSGT00940000156605 #34	ENSGT00940000157963.b	ENSGT00940000157963.a	ENSGT00940000164229 #37	ENSGT00940000155987.b	ENSGT00940000160666	ENSGT00940000162400
Elephant	MODERN SPECIES	108	ZNF384 (ENSLAFG00000008381) #7	PIANP (ENSLAFG00000025728) #8	COPS7A (ENSLAFG00000004634) #9	MLF2 (ENSLAFG00000013649) #10	LAG3 (ENSLAFG00000032271) #12	CD4 (ENSLAFG00000029166) #13	GPR162 (ENSLAFG00000022632) #14	P3H3 (ENSLAFG00000006551) #15	GNB3 (ENSLAFG00000006559) #16	ENSLAFG00000006567 #17	USP5 (ENSLAFG00000006569) #18	TPI1 (ENSLAFG00000032143) #19	SPSB2 (ENSLAFG00000030363)	LRRC23 (ENSLAFG00000005818) #20	ENO2 (ENSLAFG00000005603) #21	ATN1 (ENSLAFG00000013065) #22	C12orf57 (ENSLAFG00000013063) #23	PTPN6 (ENSLAFG00000026638) #24	PHB2 (ENSLAFG00000020869) #25	EMG1 (ENSLAFG00000001314) #26	LPCAT3 (ENSLAFG00000003470) #27	RBP5 (ENSLAFG00000032292) #32	CLSTN3 (ENSLAFG00000006568) #33	PEX5 (ENSLAFG00000006574) #34	ENSLAFG00000031645	ENSLAFG00000028952	ENSLAFG00000032210	CD163L1 (ENSLAFG00000018264) #37	CD163 (ENSLAFG00000002941)	CLEC4E (ENSLAFG00000022194)	CLEC4D (ENSLAFG00000000977)
Hyrax	MODERN SPECIES	246														LRRC23 (ENSPCAG00000011878) #20	ENO2 (ENSPCAG00000011923) #21	ATN1 (ENSPCAG00000012030) #22	C12orf57 (ENSPCAG00000012150) #23	PTPN6 (ENSPCAG00000012174) #24	PHB2 (ENSPCAG00000012299) #25	EMG1 (ENSPCAG00000012368) #26	LPCAT3 (ENSPCAG00000012408) #27
Tenrec	MODERN SPECIES	1340																ATN1 (ENSETEG00000016682) #22
Xenarthra	ANCESTRAL SPECIES	5	ENSGT00510000049460 #8	ENSGT00940000159873 #9	ENSGT00390000005023.a #10	ENSGT01030000234816	ENSGT01090000259985.b.b.b.a.a.a #12	ENSGT00390000001745 #13	ENSGT00390000017213.A #14	ENSGT00940000159164 #15	ENSGT01000000214413.b.a.b.a #16	ENSGT00390000017343 #17	ENSGT00940000156036 #18	ENSGT00390000013354.d #19	ENSGT01030000234629.A	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242 #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000157473 #30	ENSGT00940000158621 #29	ENSGT00940000162495 #31	ENSGT00940000162526 #32	ENSGT00950000183086.a.b #33
Armadillo	MODERN SPECIES	508	PIANP (ENSDNOG00000037888) #8	COPS7A (ENSDNOG00000001998) #9	ENSDNOG00000000758 #10	PTMS (ENSDNOG00000024120)	LAG3 (ENSDNOG00000002426) #12	CD4 (ENSDNOG00000002205) #13	GPR162 (ENSDNOG00000039746) #14	P3H3 (ENSDNOG00000036097) #15	GNB3 (ENSDNOG00000036546) #16	CDCA3 (ENSDNOG00000044971) #17	USP5 (ENSDNOG00000002211) #18	TPI1 (ENSDNOG00000002214) #19	SPSB2 (ENSDNOG00000047635)	LRRC23 (ENSDNOG00000002219) #20	ENO2 (ENSDNOG00000011978) #21	ATN1 (ENSDNOG00000046087) #22	C12orf57 (ENSDNOG00000012015) #23	PTPN6 (ENSDNOG00000036046) #24	PHB2 (ENSDNOG00000025639) #25	EMG1 (ENSDNOG00000005533) #26	LPCAT3 (ENSDNOG00000033494) #27	C1S (ENSDNOG00000049074) #30	ENSDNOG00000019893 #29
Marsupialia	ANCESTRAL SPECIES	4	ENSGT00940000156904 #7	ENSGT00510000049460 #8	ENSGT00940000159873 #9	ENSGT00390000005023.a #10	ENSGT01090000259985.b.b.b.a.a.a #12	ENSGT00390000001745 #13	ENSGT00390000017213.A #14	ENSGT00940000159164 #15	ENSGT01000000214413.b.a.b.a #16	ENSGT00390000017343 #17	ENSGT00940000156036 #18	ENSGT00390000013354.d #19	ENSGT01030000234629.A	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242.e #23	ENSGT00390000005242.f #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000157473 #30	ENSGT00940000158621 #29	ENSGT00940000162495 #31	ENSGT00950000183086.a.b #33	ENSGT00940000156605 #34	ENSGT00940000155955.C	ENSGT00530000063509.A	ENSGT00530000063707.a	ENSGT00940000155964
Marsupialia_b	ANCESTRAL SPECIES	12	ENSGT00510000049460 #8	ENSGT00940000159873 #9	ENSGT00390000005023.a #10	ENSGT01050000246306	ENSGT01090000259985.b.b.b.a.a.a #12	ENSGT00390000001745 #13	ENSGT00390000017213.A #14	ENSGT00940000159164 #15	ENSGT01000000214413.b.a.b.a #16	ENSGT00390000017343 #17	ENSGT00940000156036 #18	ENSGT00390000013354.d #19	ENSGT01030000234629.A	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242.e #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000157473 #30	ENSGT00940000158621 #29	ENSGT00940000162495 #31	ENSGT00950000183086.a.b #33	ENSGT00940000156605 #34	ENSGT00940000155955.C	ENSGT00530000063509.A	ENSGT00530000063707.a	ENSGT00940000155964	ENSGT00950000182696.A.a
Diprotodontia	ANCESTRAL SPECIES	16	ENSGT00510000049460 #8	ENSGT00940000159873 #9	ENSGT00390000005023.a #10	ENSGT01050000246306	ENSGT01090000259985.b.b.b.a.a.a #12	ENSGT00390000001745 #13	ENSGT00390000017213.A #14	ENSGT00940000159164 #15	ENSGT01000000214413.b.a.b.a #16	ENSGT00390000017343 #17	ENSGT00940000156036 #18	ENSGT00390000013354.d #19	ENSGT01030000234629.A	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242.e #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000157473 #30	ENSGT00940000158621 #29	ENSGT00940000162495 #31	ENSGT00950000183086.a.b #33	ENSGT00940000156605 #34	ENSGT00940000155955.C	ENSGT00530000063509.A	ENSGT00530000063707.a	ENSGT00940000155964	ENSGT00950000182696.A.a
Diprotodontia_a	ANCESTRAL SPECIES	18	ENSGT00510000049460 #8	ENSGT00940000159873 #9	ENSGT00390000005023.a #10	ENSGT01050000246306	ENSGT01090000259985.b.b.b.a.a.a #12	ENSGT00390000001745 #13	ENSGT00390000017213.A #14	ENSGT00940000159164 #15	ENSGT01000000214413.b.a.b.a #16	ENSGT00390000017343.q #17	ENSGT00940000156036 #18	ENSGT00390000013354.d #19	ENSGT01030000234629.A	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242.e #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000157473 #30	ENSGT00940000158621 #29	ENSGT00940000162495 #31	ENSGT00950000183086.a.b #33	ENSGT00940000156605 #34	ENSGT00940000155955.C	ENSGT00530000063509.A	ENSGT00530000063707.a	ENSGT00940000155964	ENSGT00950000182696.A.a
Common wonbat	MODERN SPECIES	1112	PIANP (ENSVURG00010001647) #8	COPS7A (ENSVURG00010001667) #9	MLF2 (ENSVURG00010001688) #10	ENSVURG00010001702	ENSVURG00010001711 #12	ENSVURG00010001730 #13	GPR162 (ENSVURG00010001748) #14	P3H3 (ENSVURG00010001768) #15	GNB3 (ENSVURG00010001792) #16	ENSVURG00010001810 #17	USP5 (ENSVURG00010001824) #18	TPI1 (ENSVURG00010001852) #19	SPSB2 (ENSVURG00010001864)	ENSVURG00010001873 #20	ENO2 (ENSVURG00010001899) #21	ATN1 (ENSVURG00010001982) #22	C12orf57 (ENSVURG00010001998) #23	PTPN6 (ENSVURG00010002029) #24	ENSVURG00010002133 #25	EMG1 (ENSVURG00010002256) #26	LPCAT3 (ENSVURG00010002268) #27	C1S (ENSVURG00010002291) #30	C1R (ENSVURG00010002303) #29	ENSVURG00010002311 #31
koala	MODERN SPECIES	56	PIANP (ENSPCIG00000001968) #8	COPS7A (ENSPCIG00000001977) #9	MLF2 (ENSPCIG00000001988) #10	ENSPCIG00000032253	ENSPCIG00000002003 #12	ENSPCIG00000002019 #13	GPR162 (ENSPCIG00000034794) #14	P3H3 (ENSPCIG00000002057) #15	GNB3 (ENSPCIG00000002089) #16	USP5 (ENSPCIG00000002410) #18	ENSPCIG00000002395 #17	TPI1 (ENSPCIG00000002442) #19	SPSB2 (ENSPCIG00000035402)	ENSPCIG00000002468 #20	ENO2 (ENSPCIG00000002479) #21	ATN1 (ENSPCIG00000002515) #22	C12orf57 (ENSPCIG00000002608) #23	PTPN6 (ENSPCIG00000002637) #24	PHB2 (ENSPCIG00000002687) #25	EMG1 (ENSPCIG00000002814) #26	LPCAT3 (ENSPCIG00000002864) #27	C1S (ENSPCIG00000002903) #30	C1R (ENSPCIG00000003078) #29	ENSPCIG00000003092 #31	CLSTN3 (ENSPCIG00000003113) #33	PEX5 (ENSPCIG00000003151) #34	GUCY2C (ENSPCIG00000003194)	PLBD1 (ENSPCIG00000003219)	ATF7IP (ENSPCIG00000003247)
Wallaby	MODERN SPECIES	2029																ATN1 (ENSMEUG00000015324) #22
Opossum	MODERN SPECIES	41																ATN1 (ENSMODG00000009271) #22	ENSMODG00000009276 #23
Platypus	MODERN SPECIES	87	ING4 (ENSOANG00000036657)	ZNF384 (ENSOANG00000040010) #7	PIANP (ENSOANG00000037079) #8	COPS7A (ENSOANG00000003858) #9	MLF2 (ENSOANG00000003857) #10	PTMS (ENSOANG00000045022)	GPR162 (ENSOANG00000035991) #14	P3H3 (ENSOANG00000041812) #15	GNB3 (ENSOANG00000009941) #16	ENSOANG00000042014	USP5 (ENSOANG00000040189) #18	TPI1 (ENSOANG00000042133) #19	SPSB2 (ENSOANG00000039691)	ENSOANG00000003356 #20	ENO2 (ENSOANG00000003357) #21	ATN1 (ENSOANG00000050509) #22	C12orf57 (ENSOANG00000049282) #23	PTPN6 (ENSOANG00000012769) #24	PHB2 (ENSOANG00000037102) #25	EMG1 (ENSOANG00000038468) #26	LPCAT3 (ENSOANG00000008658) #27	C1S (ENSOANG00000008659) #30	ENSOANG00000005199 #29	ENSOANG00000039314 #29	CLSTN3 (ENSOANG00000040242) #33	PEX5 (ENSOANG00000036156) #34	GUCY2C (ENSOANG00000007339)	PLBD1 (ENSOANG00000007338)	ENSOANG00000047073	ENSOANG00000003770	GRIN2B (ENSOANG00000001317)
Sauria	ANCESTRAL SPECIES	49	ENSGT00940000156904 #7	ENSGT00510000049460 #8	ENSGT00940000159873 #9	ENSGT00990000212708	ENSGT00390000005023.a #10	ENSGT01090000259985.b.b.b.a.a.a #12	ENSGT00390000001745 #13	ENSGT00390000017213.A #14	ENSGT00940000159164 #15	ENSGT01000000214413.b.a.b.a #16	ENSGT00390000017343 #17	ENSGT00940000156036 #18	ENSGT00390000013354.d #19	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242 #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000157473 #30	ENSGT00940000158621 #29	ENSGT00940000162526 #32	ENSGT00950000183086.a.b #33	ENSGT00940000166488	ENSGT00940000156605 #34
Archelosauria	ANCESTRAL SPECIES	30	ENSGT00510000049460 #8	ENSGT00940000159873 #9	ENSGT00990000212708	ENSGT00390000005023.a #10	ENSGT00950000185787	ENSGT01090000259985.b.b.b.a.a.a #12	ENSGT00390000001745 #13	ENSGT00390000017213.A #14	ENSGT00940000159164 #15	ENSGT01000000214413.b.a.b.a #16	ENSGT00390000017343 #17	ENSGT00940000156036 #18	ENSGT00390000013354.d #19	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242 #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000157473 #30	ENSGT00940000158621 #29	ENSGT00940000162526 #32	ENSGT00950000183086.a.b #33	ENSGT00940000166488	ENSGT00940000156605 #34	ENSGT01050000244815.B.a.b	ENSGT00940000160920	ENSGT00940000154273.a	ENSGT00940000171511
Archosauria	ANCESTRAL SPECIES	2	ENSGT00940000159873 #9	ENSGT00990000212708	ENSGT00390000005023.a #10	ENSGT00950000185787	ENSGT00940000168928	ENSGT01090000259985.b.b.b.a.a.a #12	ENSGT00390000001745 #13	ENSGT00390000017213.A #14	ENSGT00940000159164 #15	ENSGT01000000214413.b.a.b.a #16	ENSGT00390000017343 #17	ENSGT00940000156036 #18	ENSGT00390000013354.d #19	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242 #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000157473 #30	ENSGT00940000158621 #29	ENSGT00940000162526 #32	ENSGT00950000183086.a.b #33	ENSGT00940000166488	ENSGT00940000156605 #34	ENSGT01050000244815.B.a.b	ENSGT00940000160920	ENSGT00940000154273.a	ENSGT00940000171511
Aves	ANCESTRAL SPECIES		ENSGT00940000159873 #9	ENSGT00990000212708	ENSGT00390000005023.a #10	ENSGT00950000185787	ENSGT00940000168928	ENSGT01090000259985.b.b.b.a.a.a #12	ENSGT00390000001745 #13	ENSGT00390000017213.A #14	ENSGT00940000159164 #15	ENSGT01000000214413.b.a.b.a #16	ENSGT00390000017343 #17	ENSGT00940000156036 #18	ENSGT00390000013354.d #19	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242 #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000157473 #30	ENSGT00940000158621 #29	ENSGT00940000162526 #32	ENSGT00950000183086.a.b #33	ENSGT00940000166488	ENSGT00940000156605 #34	ENSGT00420000030545.g	ENSGT01000000214738	ENSGT01050000244815.B.a.b	ENSGT00940000160920
Neognathae	ANCESTRAL SPECIES	1	ENSGT00510000049460 #8	ENSGT00940000159873 #9	ENSGT00390000005023.a #10	ENSGT00950000185787	ENSGT00940000168928	ENSGT01090000259985.b.b.b.a.a.a #12	ENSGT00390000001745 #13	ENSGT00390000017213.A #14	ENSGT00940000159164 #15	ENSGT01000000214413.b.a.b.a #16	ENSGT00390000017343 #17	ENSGT00940000156036 #18	ENSGT00390000013354.d #19	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242 #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000157473 #30	ENSGT00940000158621 #29	ENSGT00940000162526 #32	ENSGT00950000183086.a.b #33	ENSGT00940000166488	ENSGT00940000156605 #34	ENSGT00420000030545.g	ENSGT01000000214738	ENSGT01050000244815.B.a.b	ENSGT00940000160920
Neognathae_b	ANCESTRAL SPECIES		ENSGT00510000049460 #8	ENSGT00940000159873 #9	ENSGT00390000005023.a #10	ENSGT00950000185787	ENSGT00940000168928	ENSGT01090000259985.b.b.b.a.a.a #12	ENSGT00390000001745 #13	ENSGT00390000017213.A #14	ENSGT00940000159164 #15	ENSGT01000000214413.b.a.b.a #16	ENSGT00390000017343 #17	ENSGT00940000156036 #18	ENSGT00390000013354.d #19	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242 #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000157473 #30	ENSGT00940000158621 #29	ENSGT00940000162526 #32	ENSGT00950000183086.a.b #33	ENSGT00940000166488	ENSGT00940000156605 #34	ENSGT00420000030545.g	ENSGT01000000214738	ENSGT01050000244815.B.a.b	ENSGT00940000160920
Neognathae_c	ANCESTRAL SPECIES	37	ENSGT00510000049460 #8	ENSGT00940000159873 #9	ENSGT00390000005023.a #10	ENSGT00950000185787	ENSGT00940000168928	ENSGT01090000259985.b.b.b.a.a.a #12	ENSGT00390000001745 #13	ENSGT00390000017213.A #14	ENSGT00940000159164 #15	ENSGT01000000214413.b.a.b.a #16	ENSGT00390000017343 #17	ENSGT00940000156036 #18	ENSGT00390000013354.d #19	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242 #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000157473 #30	ENSGT00940000158621 #29	ENSGT00940000162526 #32	ENSGT00950000183086.a.b #33	ENSGT00940000166488	ENSGT00940000156605 #34	ENSGT00420000030545.g	ENSGT01050000244815.B.a.b	ENSGT00940000160920	ENSGT00940000154273.a
Kakapo	MODERN SPECIES	28	ZNF384 (ENSSHBG00005006044) #7	PIANP (ENSSHBG00005006099) #8	COPS7A (ENSSHBG00005006120) #9	MLF2 (ENSSHBG00005006148) #10	ENSSHBG00005006180	ENSSHBG00005006239	ENSSHBG00005006346 #13	GPR162 (ENSSHBG00005007180) #14	ENSSHBG00005007197 #15	GNB3 (ENSSHBG00005007225) #16	CDCA3 (ENSSHBG00005007275) #17	USP5 (ENSSHBG00005007292) #18	TPI1 (ENSSHBG00005007328) #19	LRRC23 (ENSSHBG00005007344) #20	ENO2 (ENSSHBG00005007362) #21	ATN1 (ENSSHBG00005007377) #22	C12orf57 (ENSSHBG00005007392) #23	PTPN6 (ENSSHBG00005007426) #24	PHB2 (ENSSHBG00005007464) #25	EMG1 (ENSSHBG00005007480) #26	LPCAT3 (ENSSHBG00005007495) #27	C1S (ENSSHBG00005007536) #30	C1R (ENSSHBG00005007590) #29	RBP5 (ENSSHBG00005007605) #32	CLSTN3 (ENSSHBG00005007644) #33	ENSSHBG00005007669	PEX5 (ENSSHBG00005007710) #34	ENSSHBG00005007744	CSTB (ENSSHBG00005007756)	CASR (ENSSHBG00005007779)	CD86 (ENSSHBG00005007796)
Golden eagle	MODERN SPECIES	23	ZNF384 (ENSACCG00020013549) #7	PIANP (ENSACCG00020013498) #8	COPS7A (ENSACCG00020013469) #9	MLF2 (ENSACCG00020013447) #10	ENSACCG00020013433	ENSACCG00020013369 #12	ENSACCG00020013263 #13	GPR162 (ENSACCG00020013153) #14	P3H3 (ENSACCG00020013136) #15	GNB3 (ENSACCG00020013094) #16	ENSACCG00020013029	USP5 (ENSACCG00020012999) #18	TPI1 (ENSACCG00020012973) #19	LRRC23 (ENSACCG00020012950) #20	ENO2 (ENSACCG00020012897) #21	ATN1 (ENSACCG00020012859) #22	C12orf57 (ENSACCG00020012834) #23	PTPN6 (ENSACCG00020012789) #24	PHB2 (ENSACCG00020012761) #25	EMG1 (ENSACCG00020012735) #26	LPCAT3 (ENSACCG00020012705) #27	C1S (ENSACCG00020012662) #30	C1R (ENSACCG00020012637) #29	RBP5 (ENSACCG00020012622) #32	CLSTN3 (ENSACCG00020012586) #33	ENSACCG00020012562	PEX5 (ENSACCG00020012516) #34	ENSACCG00020012480	ENSACCG00020012458	EPHA1 (ENSACCG00020012421)	ZYX (ENSACCG00020012376)
Passeriformes	ANCESTRAL SPECIES	1	ENSGT00940000156904 #7	ENSGT00510000049460 #8	ENSGT00940000159873 #9	ENSGT00390000005023.a #10	ENSGT00950000185787	ENSGT00940000168928	ENSGT00390000001745 #13	ENSGT00390000017213.A #14	ENSGT00940000159164 #15	ENSGT01000000214413.b.a.b.a #16	ENSGT00390000017343 #17	ENSGT00940000156036 #18	ENSGT00390000013354.d #19	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242 #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000157473 #30	ENSGT00940000158621 #29	ENSGT00940000162526 #32	ENSGT00950000183086.a.b #33	ENSGT00940000166488	ENSGT00940000156605 #34	ENSGT00420000030545.g	ENSGT01050000244815.B.a.b	ENSGT00940000160920	ENSGT00940000154273.a
Passeriformes_d	ANCESTRAL SPECIES	1	ENSGT00940000156904 #7	ENSGT00510000049460 #8	ENSGT00940000159873 #9	ENSGT00390000005023.a #10	ENSGT00950000185787	ENSGT00940000168928	ENSGT00390000001745 #13	ENSGT00390000017213.A #14	ENSGT00940000159164 #15	ENSGT01000000214413.b.a.b.a #16	ENSGT00390000017343 #17	ENSGT00940000156036 #18	ENSGT00390000013354.d #19	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242 #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000157473 #30	ENSGT00940000158621 #29	ENSGT00940000162526 #32	ENSGT00950000183086.a.b #33	ENSGT00940000166488	ENSGT00940000156605 #34	ENSGT00420000030545.g.b.a	ENSGT01000000214738.i	ENSGT01050000244815.B.a.b	ENSGT00940000160920
Passeriformes_g	ANCESTRAL SPECIES	25	ENSGT00940000156904 #7	ENSGT00510000049460 #8	ENSGT00940000159873 #9	ENSGT00390000005023.a #10	ENSGT00950000185787	ENSGT00940000168928	ENSGT00390000001745 #13	ENSGT00390000017213.A #14	ENSGT00940000159164 #15	ENSGT01000000214413.b.a.b.a #16	ENSGT00390000017343 #17	ENSGT00940000156036 #18	ENSGT00390000013354.d #19	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242 #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000157473 #30	ENSGT00940000158621 #29	ENSGT00940000162526 #32	ENSGT00950000183086.a.b #33	ENSGT00940000166488.b	ENSGT00940000166488.a	ENSGT00940000156605 #34	ENSGT00420000030545.g.b.b	ENSGT01000000214738.j	ENSGT01050000244815.B.a.b
Medium ground finch	MODERN SPECIES	23	ING4 (ENSGFOG00000013241)	ZNF384 (ENSGFOG00000013243) #7	PIANP (ENSGFOG00000013247) #8	COPS7A (ENSGFOG00000013250) #9	MLF2 (ENSGFOG00000013254) #10	ENSGFOG00000013258	ENSGFOG00000013260	ENSGFOG00000013276 #13	GPR162 (ENSGFOG00000013280) #14	P3H3 (ENSGFOG00000013283) #15	GNB3 (ENSGFOG00000013285) #16	USP5 (ENSGFOG00000013290) #18	TPI1 (ENSGFOG00000013294) #19	LRRC23 (ENSGFOG00000013298) #20	ENO2 (ENSGFOG00000013310) #21	ATN1 (ENSGFOG00000013313) #22	PTPN6 (ENSGFOG00000013317) #24	PHB2 (ENSGFOG00000013323) #25	EMG1 (ENSGFOG00000013325) #26	LPCAT3 (ENSGFOG00000013330) #27	C1S (ENSGFOG00000013338) #30	C1R (ENSGFOG00000013342) #29	RBP5 (ENSGFOG00000013345) #32	CLSTN3 (ENSGFOG00000013348) #33	ENSGFOG00000013352	ENSGFOG00000013354	PEX5 (ENSGFOG00000013357) #34	ENSGFOG00000013372
Passeroidea	ANCESTRAL SPECIES	5	ENSGT00940000156904 #7	ENSGT00510000049460 #8	ENSGT00940000159873 #9	ENSGT00390000005023.a #10	ENSGT00950000185787	ENSGT00940000168928	ENSGT00390000001745 #13	ENSGT00390000017213.A #14	ENSGT00940000159164 #15	ENSGT01000000214413.b.a.b.a #16	ENSGT00390000017343 #17	ENSGT00940000156036 #18	ENSGT00390000013354.d #19	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242 #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000157473 #30	ENSGT00940000158621 #29	ENSGT00940000162526 #32	ENSGT00950000183086.a.b #33	ENSGT00940000166488.b	ENSGT00940000166488.a	ENSGT00940000156605 #34	ENSGT00420000030545.g.b.b	ENSGT01000000214738.j	ENSGT01050000244815.B.a.b
Common canary	MODERN SPECIES	4	ENSSCAG00000011706	LPAR5 (ENSSCAG00000011712)	ENSSCAG00000011715	CHD4 (ENSSCAG00000012159)	ENSSCAG00000014175	IFFO1 (ENSSCAG00000014177)	GAPDH (ENSSCAG00000014296)	ENSSCAG00000014608	NCAPD2 (ENSSCAG00000014615)	MRPL51 (ENSSCAG00000014627)	VAMP1 (ENSSCAG00000014630)	SCNN1A (ENSSCAG00000014632)	FBXO40 (ENSSCAG00000014639)	LRRC23 (ENSSCAG00000014644) #20	ENO2 (ENSSCAG00000014656) #21	ATN1 (ENSSCAG00000014678) #22	C12orf57 (ENSSCAG00000014688) #23	PTPN6 (ENSSCAG00000014698) #24	PHB2 (ENSSCAG00000014710) #25	ENSSCAG00000014717	EMG1 (ENSSCAG00000014723) #26	LPCAT3 (ENSSCAG00000014751) #27	C1S (ENSSCAG00000014825) #30	C1R (ENSSCAG00000014837) #29	RBP5 (ENSSCAG00000014844) #32	CLSTN3 (ENSSCAG00000014851) #33	ENSSCAG00000014859	PEX5 (ENSSCAG00000014867) #34	ENSSCAG00000014877	ENSSCAG00000014885	ENSSCAG00000014893
Zebra finch	MODERN SPECIES		ING4 (ENSTGUG00000013323)	ZNF384 (ENSTGUG00000013319) #7	PIANP (ENSTGUG00000023446) #8	COPS7A (ENSTGUG00000013312) #9	ENSTGUG00000013310 #10	ENSTGUG00000013307	ENSTGUG00000013304 #13	GPR162 (ENSTGUG00000018169) #14	P3H3 (ENSTGUG00000013302) #15	GNB3 (ENSTGUG00000013301) #16	CDCA3 (ENSTGUG00000013300) #17	USP5 (ENSTGUG00000013294) #18	ENO2 (ENSTGUG00000013292) #21	TPI1 (ENSTGUG00000023677) #19	LRRC23 (ENSTGUG00000018128) #20	ATN1 (ENSTGUG00000013280) #22	C1H12orf57 (ENSTGUG00000013279) #23	PTPN6 (ENSTGUG00000013276) #24	PHB2 (ENSTGUG00000013273) #25	EMG1 (ENSTGUG00000013271) #26	LPCAT3 (ENSTGUG00000013269) #27	C1S (ENSTGUG00000013265) #30	C1R (ENSTGUG00000013261) #29	RBP5 (ENSTGUG00000013259) #32	CLSTN3 (ENSTGUG00000013253) #33	ENSTGUG00000013252	PEX5 (ENSTGUG00000013248) #34	ENSTGUG00000022711	ENSTGUG00000021638	ENSTGUG00000019774	ENSTGUG00000027668
Flycatcher	MODERN SPECIES		LPAR5 (ENSFALG00000014540)	ACRBP (ENSFALG00000004771)	ING4 (ENSFALG00000004756)	PIANP (ENSFALG00000004734) #8	COPS7A (ENSFALG00000027863) #9	ENSFALG00000004741 #7	ENSFALG00000023328	ENSFALG00000004715	ENSFALG00000004705 #13	GPR162 (ENSFALG00000004699) #14	P3H3 (ENSFALG00000004696) #15	GNB3 (ENSFALG00000004692) #16	USP5 (ENSFALG00000004685) #18	LRRC23 (ENSFALG00000004669) #20	ENO2 (ENSFALG00000004665) #21	ATN1 (ENSFALG00000004657) #22	PTPN6 (ENSFALG00000004645) #24	PHB2 (ENSFALG00000004627) #25	ENSFALG00000028943	EMG1 (ENSFALG00000004617) #26	LPCAT3 (ENSFALG00000027128) #27	C1S (ENSFALG00000004610) #30	C1R (ENSFALG00000004606) #29	RBP5 (ENSFALG00000004603) #32	CLSTN3 (ENSFALG00000004589) #33	ENSFALG00000004595	ENSFALG00000027897	PEX5 (ENSFALG00000004586) #34	ENSFALG00000026165	ENSFALG00000024862	ENSFALG00000026331
Great tit	MODERN SPECIES		ZNF384 (ENSPMJG00000007327) #7	PIANP (ENSPMJG00000007323) #8	COPS7A (ENSPMJG00000007320) #9	MLF2 (ENSPMJG00000007317) #10	ENSPMJG00000007316	ENSPMJG00000007313	ENSPMJG00000007310 #13	GPR162 (ENSPMJG00000007307) #14	P3H3 (ENSPMJG00000007300) #15	GNB3 (ENSPMJG00000007272) #16	ENSPMJG00000007269	USP5 (ENSPMJG00000007267) #18	TPI1 (ENSPMJG00000007264) #19	LRRC23 (ENSPMJG00000007259) #20	ENO2 (ENSPMJG00000007256) #21	ATN1 (ENSPMJG00000007252) #22	C12orf57 (ENSPMJG00000007246) #23	PTPN6 (ENSPMJG00000007018) #24	PHB2 (ENSPMJG00000007010) #25	EMG1 (ENSPMJG00000007001) #26	LPCAT3 (ENSPMJG00000006918) #27	C1S (ENSPMJG00000006906) #30	C1R (ENSPMJG00000006905) #29	RBP5 (ENSPMJG00000006903) #32	CLSTN3 (ENSPMJG00000006900) #33	ENSPMJG00000006899	PEX5 (ENSPMJG00000006877) #34	ENSPMJG00000006874	ENSPMJG00000006868	ENSPMJG00000006863	ENSPMJG00000006783
Galloanserae	ANCESTRAL SPECIES	1	ENSGT00510000049460 #8	ENSGT00940000159873 #9	ENSGT00390000005023.a #10	ENSGT00950000185787	ENSGT00940000168928	ENSGT01090000259985.b.b.b.a.a.a #12	ENSGT00390000001745 #13	ENSGT00390000017213.A #14	ENSGT00940000159164 #15	ENSGT01000000214413.b.a.b.a #16	ENSGT00390000017343 #17	ENSGT00940000156036 #18	ENSGT00390000013354.d #19	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242 #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000157473 #30	ENSGT00940000158621 #29	ENSGT00940000162526 #32	ENSGT00950000183086.a.b #33	ENSGT00940000166488	ENSGT00940000156605 #34	ENSGT00420000030545.g	ENSGT01050000244815.B.a.b	ENSGT00940000160920	ENSGT00940000154273.a
Anatidae	ANCESTRAL SPECIES	6	ENSGT00940000156904 #7	ENSGT00510000049460 #8	ENSGT00940000159873 #9	ENSGT00390000005023.a #10	ENSGT00950000185787	ENSGT01090000259985.b.b.b.a.a.a #12	ENSGT00390000001745 #13	ENSGT00390000017213.A #14	ENSGT00940000159164 #15	ENSGT01000000214413.b.a.b.a #16	ENSGT01030000236432	ENSGT00940000156036 #18	ENSGT00390000013354.d #19	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242 #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00960000193110	ENSGT00940000157473 #30	ENSGT00940000158621 #29	ENSGT00940000162526 #32	ENSGT00950000183086.a.b #33	ENSGT00940000166488	ENSGT00940000156605 #34	ENSGT00420000030545.g	ENSGT01050000244815.B.a.b	ENSGT00940000160920
Pink-footed goose	MODERN SPECIES	319	PIANP (ENSABRG00000012579) #8	COPS7A (ENSABRG00000012574) #9	MLF2 (ENSABRG00000012568) #10	ENSABRG00000012557	LAG3 (ENSABRG00000012548) #12	ENSABRG00000012533 #13	GPR162 (ENSABRG00000012527) #14	P3H3 (ENSABRG00000012526) #15	GNB3 (ENSABRG00000012518) #16	ENSABRG00000012516	USP5 (ENSABRG00000012507) #18	TPI1 (ENSABRG00000012501) #19	LRRC23 (ENSABRG00000012486) #20	ENSABRG00000012458	ENO2 (ENSABRG00000012455) #21	ATN1 (ENSABRG00000012448) #22	C12orf57 (ENSABRG00000012446) #23	PTPN6 (ENSABRG00000012266) #24	PHB2 (ENSABRG00000012199) #25	EMG1 (ENSABRG00000012035) #26	LPCAT3 (ENSABRG00000011999) #27	ENSABRG00000011981	C1S (ENSABRG00000011969) #30	C1R (ENSABRG00000011953) #29	RBP5 (ENSABRG00000011937) #32	CLSTN3 (ENSABRG00000011893) #33	ENSABRG00000011880	ENSABRG00000011844 #34
Duck	MODERN SPECIES		ING4 (ENSAPLG00000015791)	ZNF384 (ENSAPLG00000015889) #7	PIANP (ENSAPLG00000021371) #8	COPS7A (ENSAPLG00000001230) #9	MLF2 (ENSAPLG00000002492) #10	ENSAPLG00000000776	LAG3 (ENSAPLG00000002679) #12	GPR162 (ENSAPLG00000028368) #14	P3H3 (ENSAPLG00000002993) #15	GNB3 (ENSAPLG00000003313) #16	USP5 (ENSAPLG00000003443) #18	TPI1 (ENSAPLG00000004000) #19	ENSAPLG00000004212 #20	ENSAPLG00000024460 #20	ENO2 (ENSAPLG00000019275) #21	ATN1 (ENSAPLG00000021772) #22	C12orf57 (ENSAPLG00000017896) #23	PTPN6 (ENSAPLG00000004866) #24	PHB2 (ENSAPLG00000005151) #25	EMG1 (ENSAPLG00000005308) #26	LPCAT3 (ENSAPLG00000005313) #27	ENSAPLG00000017179	C1S (ENSAPLG00000005501) #30	C1R (ENSAPLG00000006077) #29	CLSTN3 (ENSAPLG00000007312) #33	RBP5 (ENSAPLG00000007239) #32	ENSAPLG00000007797	PEX5 (ENSAPLG00000007988) #34	ENSAPLG00000000700	EPHA1 (ENSAPLG00000002800)	ZYX (ENSAPLG00000003801)
Phasianidae	ANCESTRAL SPECIES		ENSGT00510000049460 #8	ENSGT00940000159873 #9	ENSGT00390000005023.a #10	ENSGT00950000185787	ENSGT00940000168928	ENSGT01090000259985.b.b.b.a.a.a #12	ENSGT00390000001745 #13	ENSGT00390000017213.A #14	ENSGT00940000159164 #15	ENSGT01000000214413.b.a.b.a #16	ENSGT00390000017343 #17	ENSGT00940000156036 #18	ENSGT00390000013354.d #19	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242 #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000157473 #30	ENSGT00940000158621 #29	ENSGT00940000162526 #32	ENSGT00950000183086.a.b #33	ENSGT00940000166488	ENSGT00940000156605 #34	ENSGT01050000244815.B.a.b	ENSGT00940000160920.c	ENSGT00940000154273.a	ENSGT00940000171511
Japanese quail	MODERN SPECIES		ING4 (ENSCJPG00005016730)	ZNF384 (ENSCJPG00005016731) #7	PIANP (ENSCJPG00005016732) #8	COPS7A (ENSCJPG00005016746) #9	MLF2 (ENSCJPG00005016747) #10	ENSCJPG00005016749	ENSCJPG00005016750	ENSCJPG00005016751 #13	GPR162 (ENSCJPG00005016752) #14	P3H3 (ENSCJPG00005016753) #15	ENSCJPG00005016754	USP5 (ENSCJPG00005016755) #18	TPI1 (ENSCJPG00005016756) #19	LRRC23 (ENSCJPG00005016757) #20	ENO2 (ENSCJPG00005016758) #21	ATN1 (ENSCJPG00005016759) #22	PHB2 (ENSCJPG00005016760) #25	C12orf57 (ENSCJPG00005016761) #23	PTPN6 (ENSCJPG00005016762) #24	ENSCJPG00005016763 #26	LPCAT3 (ENSCJPG00005016764) #27	C1S (ENSCJPG00005016765) #30	C1R (ENSCJPG00005016766) #29	RBP5 (ENSCJPG00005016767) #32	CLSTN3 (ENSCJPG00005016768) #33	ENSCJPG00005016769	PEX5 (ENSCJPG00005016770) #34	ENSCJPG00005016898	EPHA1 (ENSCJPG00005016957)	ZYX (ENSCJPG00005016958)	FAM131B (ENSCJPG00005016959)
Phasianidae_b	ANCESTRAL SPECIES		ENSGT00510000049460 #8	ENSGT00940000159873 #9	ENSGT00390000005023.a #10	ENSGT00950000185787	ENSGT00940000168928	ENSGT01090000259985.b.b.b.a.a.a #12	ENSGT00390000001745 #13	ENSGT00390000017213.A #14	ENSGT00940000159164 #15	ENSGT01000000214413.b.a.b.a #16	ENSGT00390000017343 #17	ENSGT00940000156036 #18	ENSGT00390000013354.d #19	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242 #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000157473 #30	ENSGT00940000158621 #29	ENSGT00940000162526 #32	ENSGT00950000183086.a.b #33	ENSGT00940000166488	ENSGT00940000156605 #34	ENSGT01050000244815.B.a.b	ENSGT00940000160920.c	ENSGT00940000154273.a	ENSGT00940000171511
Chicken	MODERN SPECIES		ZNF384 (ENSGALG00010021687) #7	PIANP (ENSGALG00010021697) #8	COPS7A (ENSGALG00010021704) #9	MLF2 (ENSGALG00010021530) #10	ENSGALG00010023320	LAG3 (ENSGALG00010023324) #12	CD4 (ENSGALG00010023331) #13	GPR162 (ENSGALG00010023336) #14	P3H3 (ENSGALG00010023340) #15	GNB3 (ENSGALG00010023351) #16	CDCA3 (ENSGALG00010023359) #17	USP5 (ENSGALG00010023380) #18	TPI1 (ENSGALG00010023392) #19	LRRC23 (ENSGALG00010023401) #20	ENO2 (ENSGALG00010026252) #21	ATN1 (ENSGALG00010023434) #22	C12orf57 (ENSGALG00010023447) #23	PTPN6 (ENSGALG00010023472) #24	PHB2 (ENSGALG00010023490) #25	EMG1 (ENSGALG00010023522) #26	LPCAT3 (ENSGALG00010023569) #27	ENSGALG00010023583	C1S (ENSGALG00010023603) #30	C1R (ENSGALG00010023655) #29	CLSTN3 (ENSGALG00010023695) #33	ENSGALG00010023748	PEX5 (ENSGALG00010023800) #34	ENSGALG00010025669	EPHA1 (ENSGALG00010023864)	ZYX (ENSGALG00010023926)	ENSGALG00010026266
Turkey	MODERN SPECIES		ENSMGAG00000014169	ENSMGAG00000014170	FAM131B (ENSMGAG00000014185)	ENSMGAG00000014177	ENSMGAG00000014183	ENSMGAG00000022237	ENSMGAG00000016049	ENSMGAG00000014167 #34	CLSTN3 (ENSMGAG00000014157) #33	ENSMGAG00000014164	ENSMGAG00000014150 #30	ENSMGAG00000014154 #29	RBP5 (ENSMGAG00000014156) #32	ENSMGAG00000014145 #26	ENSMGAG00000014147 #27	ATN1 (ENSMGAG00000014134) #22	C12orf57 (ENSMGAG00000014137) #23	PTPN6 (ENSMGAG00000014138) #24	PHB2 (ENSMGAG00000014144) #25	ENO2 (ENSMGAG00000014131) #21	ENSMGAG00000014129 #19	ENSMGAG00000020253 #20	USP5 (ENSMGAG00000014124) #18	ENSMGAG00000014116 #15	ENSMGAG00000014120 #16	GPR162 (ENSMGAG00000014115) #14	ENSMGAG00000018668	ENSMGAG00000014111	CD4 (ENSMGAG00000014113) #13	ENSMGAG00000014109 #10	ENSMGAG00000014106 #9
African ostrich	MODERN SPECIES	972	ENSSCUG00000017892	PIANP (ENSSCUG00000017894) #8	COPS7A (ENSSCUG00000017895) #9	ENSSCUG00000017897	MLF2 (ENSSCUG00000017898) #10	ENSSCUG00000017901	ENSSCUG00000017902	ENSSCUG00000017905 #13	GPR162 (ENSSCUG00000017907) #14	P3H3 (ENSSCUG00000017908) #15	GNB3 (ENSSCUG00000017910) #16	USP5 (ENSSCUG00000017912) #18	TPI1 (ENSSCUG00000017915) #19	LRRC23 (ENSSCUG00000017919) #20	ENO2 (ENSSCUG00000017921) #21	ATN1 (ENSSCUG00000017925) #22	PTPN6 (ENSSCUG00000017931) #24	PHB2 (ENSSCUG00000017942) #25	LPCAT3 (ENSSCUG00000017947) #27	EMG1 (ENSSCUG00000017949) #26	C1S (ENSSCUG00000017954) #30	C1R (ENSSCUG00000017959) #29	RBP5 (ENSSCUG00000017961) #32	CLSTN3 (ENSSCUG00000017963) #33	ENSSCUG00000017964	PEX5 (ENSSCUG00000017966) #34	ENSSCUG00000017969	ENSSCUG00000017971	EPHA1 (ENSSCUG00000017973)	ZYX (ENSSCUG00000017976)	FAM131B (ENSSCUG00000017978)
Australian saltwater crocodile	MODERN SPECIES	60	ZNF384 (ENSCPRG00005005809) #7	PIANP (ENSCPRG00005005804) #8	COPS7A (ENSCPRG00005005800) #9	MLF2 (ENSCPRG00005005783) #10	ENSCPRG00005005775	ENSCPRG00005005769	ENSCPRG00005005677	GPR162 (ENSCPRG00005005667) #14	P3H3 (ENSCPRG00005005662) #15	GNB3 (ENSCPRG00005005605) #16	ENSCPRG00005005596	USP5 (ENSCPRG00005005162) #18	TPI1 (ENSCPRG00005005065) #19	LRRC23 (ENSCPRG00005005049) #20	ENO2 (ENSCPRG00005005045) #21	ATN1 (ENSCPRG00005005035) #22	C12orf57 (ENSCPRG00005005023) #23	PTPN6 (ENSCPRG00005004916) #24	PHB2 (ENSCPRG00005004808) #25	EMG1 (ENSCPRG00005004794) #26	LPCAT3 (ENSCPRG00005004783) #27	C1S (ENSCPRG00005004775) #30	C1R (ENSCPRG00005004767) #29	RBP5 (ENSCPRG00005004765) #32	CLSTN3 (ENSCPRG00005004757) #33	ENSCPRG00005004743	PEX5 (ENSCPRG00005004726) #34	ENSCPRG00005004711	LNP1 (ENSCPRG00005004709)	ENSCPRG00005004708	TOMM70 (ENSCPRG00005004539)
Cryptodira	ANCESTRAL SPECIES		ENSGT00940000156904 #7	ENSGT00510000049460 #8	ENSGT00940000159873 #9	ENSGT00390000005023.a #10	ENSGT00950000185787	ENSGT01090000259985.b.b.b.a.a.a #12	ENSGT00390000001745 #13	ENSGT00390000017213.A #14	ENSGT00940000159164 #15	ENSGT01000000214413.b.a.b.a #16	ENSGT00390000017343 #17	ENSGT00940000156036 #18	ENSGT00390000013354.d #19	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242 #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000157473 #30	ENSGT00940000158621 #29	ENSGT00940000162526 #32	ENSGT00950000183086.a.b #33	ENSGT00940000166488	ENSGT00940000156605 #34
Testudinoidea	ANCESTRAL SPECIES	1	ENSGT00940000156904 #7	ENSGT00510000049460 #8	ENSGT00940000159873 #9	ENSGT00390000005023.a #10	ENSGT00950000185787	ENSGT01090000259985.b.b.b.a.a.a #12	ENSGT00390000001745 #13	ENSGT00390000017213.A #14	ENSGT00940000159164 #15	ENSGT01000000214413.b.a.b.a #16	ENSGT00390000017343 #17	ENSGT00940000156036 #18	ENSGT00390000013354.d #19	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242 #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000157473 #30	ENSGT00940000158621.a #29	ENSGT00940000162526 #32	ENSGT00950000183086.a.b #33	ENSGT00940000166488	ENSGT00940000156605 #34	ENSGT00440000033697	ENSGT00940000168148	ENSGT00940000156657	ENSGT00940000157383
Emydidae	ANCESTRAL SPECIES	57	ENSGT00940000159033	ENSGT00940000156904 #7	ENSGT00510000049460 #8	ENSGT00940000159873 #9	ENSGT00390000005023.a #10	ENSGT00940000168928	ENSGT00390000001745 #13	ENSGT00390000017213.A #14	ENSGT00940000159164 #15	ENSGT01000000214413.b.a.b.a #16	ENSGT00390000017343 #17	ENSGT00940000156036 #18	ENSGT00390000013354.d #19	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242 #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000157473.m #30	ENSGT00940000158621.a.a #29	ENSGT00940000162526 #32	ENSGT00950000183086.a.b #33	ENSGT00940000166488	ENSGT00940000156605 #34	ENSGT00440000033697	ENSGT00940000168148	ENSGT00940000156657	ENSGT00940000157383
Three-toed box turtle	MODERN SPECIES	357	ZNF384 (ENSTMTG00000003676) #7	PIANP (ENSTMTG00000003558) #8	COPS7A (ENSTMTG00000003508) #9	MLF2 (ENSTMTG00000003474) #10	ENSTMTG00000003450	ENSTMTG00000003376 #12	ENSTMTG00000008800	GPR162 (ENSTMTG00000008765) #14	P3H3 (ENSTMTG00000008695) #15	GNB3 (ENSTMTG00000008647) #16	ENSTMTG00000008609	USP5 (ENSTMTG00000008569) #18	TPI1 (ENSTMTG00000008558) #19	LRRC23 (ENSTMTG00000008531) #20	ENO2 (ENSTMTG00000008152) #21	ATN1 (ENSTMTG00000008111) #22	C12orf57 (ENSTMTG00000008083) #23	PTPN6 (ENSTMTG00000008036) #24	PHB2 (ENSTMTG00000008009) #25	EMG1 (ENSTMTG00000007994) #26	LPCAT3 (ENSTMTG00000007948) #27	ENSTMTG00000007921 #30	ENSTMTG00000007899 #29	RBP5 (ENSTMTG00000007892) #32	CLSTN3 (ENSTMTG00000007841) #33	ENSTMTG00000007823	PEX5 (ENSTMTG00000007726) #34	GSTK1 (ENSTMTG00000007704)	ENSTMTG00000007687	CASP2 (ENSTMTG00000007646)	CLCN1 (ENSTMTG00000007575)
painted turtle	MODERN SPECIES	1055										GNB3 (ENSCPBG00000004738) #16	CDCA3 (ENSCPBG00000005061) #17	USP5 (ENSCPBG00000005073) #18	TPI1 (ENSCPBG00000005099) #19	LRRC23 (ENSCPBG00000005104) #20	ENO2 (ENSCPBG00000005111) #21	ATN1 (ENSCPBG00000005119) #22	C12orf57 (ENSCPBG00000005136) #23	PTPN6 (ENSCPBG00000005148) #24	PHB2 (ENSCPBG00000005162) #25	EMG1 (ENSCPBG00000005167) #26	LPCAT3 (ENSCPBG00000005176) #27	C1S (ENSCPBG00000005186) #30	ENSCPBG00000005202 #29	RBP5 (ENSCPBG00000005217) #32	CLSTN3 (ENSCPBG00000005229) #33	ENSCPBG00000005241	GSTK1 (ENSCPBG00000005253)	ENSCPBG00000005266
Testudinidae	ANCESTRAL SPECIES		ENSGT00510000049460 #8	ENSGT00940000159873 #9	ENSGT00390000005023.a #10	ENSGT00950000185787	ENSGT01090000259985.b.b.b.a.a.a #12	ENSGT00390000001745 #13	ENSGT00390000017213.A #14	ENSGT00940000159164 #15	ENSGT01000000214413.b.a.b.a #16	ENSGT00390000017343 #17	ENSGT00940000168539	ENSGT00940000156036 #18	ENSGT00390000013354.d #19	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242 #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000157473 #30	ENSGT00940000158621.a #29	ENSGT00940000162526 #32	ENSGT00950000183086.a.b #33	ENSGT00940000166488	ENSGT00940000156605 #34	ENSGT00440000033697	ENSGT00940000156138	ENSGT00940000168148	ENSGT00940000156657
Goode s thornscrub tortoise	MODERN SPECIES		COPS7A (ENSGEVG00005003541) #9	MLF2 (ENSGEVG00005008774) #10	ENSGEVG00005008802	ENSGEVG00005008834 #12	ENSGEVG00005008875 #13	ENSGEVG00005008896	ENSGEVG00005008913	GPR162 (ENSGEVG00005008929) #14	P3H3 (ENSGEVG00005008983) #15	GNB3 (ENSGEVG00005009024) #16	CDCA3 (ENSGEVG00005009106) #17	USP5 (ENSGEVG00005009143) #18	TPI1 (ENSGEVG00005009272) #19	LRRC23 (ENSGEVG00005009368) #20	ENO2 (ENSGEVG00005009659) #21	ATN1 (ENSGEVG00005010185) #22	C12orf57 (ENSGEVG00005010219) #23	PTPN6 (ENSGEVG00005010250) #24	PHB2 (ENSGEVG00005010289) #25	EMG1 (ENSGEVG00005010325) #26	LPCAT3 (ENSGEVG00005010368) #27	C1S (ENSGEVG00005010432) #30	ENSGEVG00005010991 #29	RBP5 (ENSGEVG00005011382) #32	CLSTN3 (ENSGEVG00005011415) #33	ENSGEVG00005011568	PEX5 (ENSGEVG00005011609) #34	GSTK1 (ENSGEVG00005011687)	ENSGEVG00005011719	ENSGEVG00005011887	CASP2 (ENSGEVG00005011904)
Abingdon island giant tortoise	MODERN SPECIES	333														LRRC23 (ENSCABG00000000853) #20	ENO2 (ENSCABG00000000850) #21	ATN1 (ENSCABG00000000845) #22	C12orf57 (ENSCABG00000000841) #23	PTPN6 (ENSCABG00000000837) #24	PHB2 (ENSCABG00000000830) #25	EMG1 (ENSCABG00000000824) #26	LPCAT3 (ENSCABG00000000820) #27	C1S (ENSCABG00000000762) #30	C1R (ENSCABG00000000711) #29	RBP5 (ENSCABG00000000697) #32	CLSTN3 (ENSCABG00000000688) #33	ENSCABG00000000684	PEX5 (ENSCABG00000000680) #34
Chinese turtle	MODERN SPECIES	1166	ING4 (ENSPSIG00000015200)	ENSPSIG00000015173 #7	PIANP (ENSPSIG00000015128) #8	COPS7A (ENSPSIG00000015085) #9	MLF2 (ENSPSIG00000014808) #10	ENSPSIG00000014771 #12	ENSPSIG00000014631 #13	GPR162 (ENSPSIG00000014547) #14	P3H3 (ENSPSIG00000014258) #15	GNB3 (ENSPSIG00000014105) #16	USP5 (ENSPSIG00000013620) #18	TPI1 (ENSPSIG00000013373) #19	ENSPSIG00000001676	LRRC23 (ENSPSIG00000013205) #20	ENO2 (ENSPSIG00000012860) #21	ATN1 (ENSPSIG00000012639) #22	C12orf57 (ENSPSIG00000012634) #23	PTPN6 (ENSPSIG00000011564) #24	PHB2 (ENSPSIG00000011138) #25	EMG1 (ENSPSIG00000011094) #26	LPCAT3 (ENSPSIG00000010704) #27	ENSPSIG00000010124 #30	ENSPSIG00000010114 #30
Lepidosauria	ANCESTRAL SPECIES	65	ENSGT00940000156904 #7	ENSGT00510000049460 #8	ENSGT00940000159873 #9	ENSGT00990000212708	ENSGT00390000005023.a #10	ENSGT01090000259985.b.b.b.a.a.a #12	ENSGT00940000168928	ENSGT00390000017213.A #14	ENSGT00940000159164 #15	ENSGT01000000214413.b.a.b.a #16	ENSGT00940000168539	ENSGT00940000156036 #18	ENSGT00390000013354.d #19	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242 #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000157473 #30	ENSGT00940000158621 #29	ENSGT00940000162526 #32	ENSGT00950000183086.a.b #33	ENSGT00940000166488	ENSGT00940000156605 #34
Episquamata	ANCESTRAL SPECIES	6	ENSGT00940000156904 #7	ENSGT00510000049460 #8	ENSGT00940000159873 #9	ENSGT00990000212708	ENSGT00390000005023.a #10	ENSGT01090000259985.b.b.b.a.a.a #12	ENSGT00990000211157	ENSGT00390000017213.A #14	ENSGT00940000159164 #15	ENSGT01000000214413.b.a.b.a #16	ENSGT00940000168539	ENSGT00940000156036 #18	ENSGT00390000013354.d #19	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242 #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000157473 #30	ENSGT00940000158621 #29	ENSGT00940000162526 #32	ENSGT00950000183086.a.b #33	ENSGT00940000166488	ENSGT00940000156605 #34	ENSGT00940000157596	ENSGT00940000157498	ENSGT00940000155444	ENSGT00390000018717.b.a.b
Laterata	ANCESTRAL SPECIES	7	ENSGT00940000156904 #7	ENSGT00510000049460 #8	ENSGT00940000159873 #9	ENSGT00990000212708	ENSGT00390000005023.a #10	ENSGT01090000259985.b.b.b.a.a.a #12	ENSGT00990000211157	ENSGT00390000017213.A #14	ENSGT00940000159164 #15	ENSGT01000000214413.b.a.b.a.d #16	ENSGT00940000168539	ENSGT00940000156036 #18	ENSGT00390000013354.d #19	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242 #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000157473 #30	ENSGT00940000158621 #29	ENSGT00940000162526 #32	ENSGT00950000183086.a.b #33	ENSGT00940000166488	ENSGT00940000156605 #34	ENSGT00940000157596	ENSGT00940000157498	ENSGT00940000155444	ENSGT00390000018717.b.a.b
Argentine black and white tegu	MODERN SPECIES	45	ZNF384 (ENSSMRG00000019107) #7	PIANP (ENSSMRG00000019109) #8	COPS7A (ENSSMRG00000019110) #9	ENSSMRG00000019111	MLF2 (ENSSMRG00000019112) #10	ENSSMRG00000019113	ENSSMRG00000019114	GPR162 (ENSSMRG00000019118) #14	P3H3 (ENSSMRG00000019119) #15	GNB3 (ENSSMRG00000019120) #16	ENSSMRG00000019122	USP5 (ENSSMRG00000019123) #18	TPI1 (ENSSMRG00000019124) #19	LRRC23 (ENSSMRG00000019125) #20	ENO2 (ENSSMRG00000019126) #21	ATN1 (ENSSMRG00000019127) #22	C12orf57 (ENSSMRG00000019294) #23	PTPN6 (ENSSMRG00000019297) #24	PHB2 (ENSSMRG00000019300) #25	EMG1 (ENSSMRG00000019302) #26	LPCAT3 (ENSSMRG00000019303) #27	C1S (ENSSMRG00000019304) #30	C1R (ENSSMRG00000019305) #29	RBP5 (ENSSMRG00000019306) #32	CLSTN3 (ENSSMRG00000019307) #33	ENSSMRG00000019308	ENSSMRG00000019309	PEX5 (ENSSMRG00000019310) #34	CASR (ENSSMRG00000019311)	MAN1A2 (ENSSMRG00000019312)	ENSSMRG00000019313
Common wall lizard	MODERN SPECIES	8	ZNF384 (ENSPMRG00000018429) #7	PIANP (ENSPMRG00000018419) #8	COPS7A (ENSPMRG00000018410) #9	ENSPMRG00000018406	MLF2 (ENSPMRG00000018362) #10	LAG3 (ENSPMRG00000018333) #12	ENSPMRG00000018312	GPR162 (ENSPMRG00000018296) #14	P3H3 (ENSPMRG00000018283) #15	GNB3 (ENSPMRG00000018273) #16	ENSPMRG00000018266	USP5 (ENSPMRG00000018255) #18	TPI1 (ENSPMRG00000018244) #19	LRRC23 (ENSPMRG00000018237) #20	ENO2 (ENSPMRG00000018213) #21	ATN1 (ENSPMRG00000018192) #22	C12orf57 (ENSPMRG00000018182) #23	PTPN6 (ENSPMRG00000018168) #24	PHB2 (ENSPMRG00000018118) #25	EMG1 (ENSPMRG00000018101) #26	LPCAT3 (ENSPMRG00000018076) #27	C1S (ENSPMRG00000018060) #30	C1R (ENSPMRG00000018029) #29	CLSTN3 (ENSPMRG00000018007) #33	ENSPMRG00000017999	PEX5 (ENSPMRG00000017982) #34	CASR (ENSPMRG00000017969)	ENSPMRG00000017962	MAN1A2 (ENSPMRG00000017944)	ENSPMRG00000017936	HAO2 (ENSPMRG00000017927)
Toxicofera	ANCESTRAL SPECIES	6	ENSGT00950000183136.b.b	ENSGT00390000000826	ENSGT00940000159033	ENSGT00940000156904 #7	ENSGT00510000049460 #8	ENSGT00940000159873 #9	ENSGT00390000005023.a #10	ENSGT01090000259985.b.b.b.a.a.a #12	ENSGT00990000211157	ENSGT00390000017213.A #14	ENSGT00940000159164 #15	ENSGT01000000214413.b.a.b.a #16	ENSGT01030000236833	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242 #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000157473 #30	ENSGT00940000158621 #29	ENSGT00940000162526 #32	ENSGT00950000183086.a.b #33	ENSGT00940000166488	ENSGT00940000156605 #34	ENSGT00940000157596	ENSGT00940000157498	ENSGT00940000155444	ENSGT00390000018717.b.a.b
Elapidae	ANCESTRAL SPECIES	28	ENSGT00940000155088	ENSGT00950000183136.b.b	ENSGT00390000000826	ENSGT00940000159033.e	ENSGT00940000156904 #7	ENSGT00510000049460 #8	ENSGT00940000159873 #9	ENSGT00390000005023.a #10	ENSGT00940000168928	ENSGT00390000017213.A #14	ENSGT00940000159164 #15	ENSGT01000000214413.b.a.b.a #16	ENSGT01030000236833	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242 #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a.jb #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000161852.z.b	ENSGT00940000157473 #30	ENSGT00940000158621.e #29	ENSGT00940000162526 #32	ENSGT00950000183086.a.b #33	ENSGT00940000166488	ENSGT00940000156605 #34	ENSGT00940000157596	ENSGT00940000157498	ENSGT00940000155444
Elapidae_a	ANCESTRAL SPECIES	47	ENSGT00390000000826	ENSGT00940000159033.e	ENSGT00940000156904 #7	ENSGT00510000049460 #8	ENSGT00940000159873 #9	ENSGT00390000005023.a #10	ENSGT00940000168928	ENSGT00390000017213.A #14	ENSGT00940000159164 #15	ENSGT01000000214413.b.a.b.a #16	ENSGT00940000168539	ENSGT00940000156036 #18	ENSGT00390000013354.c.a.a ##19	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242 #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a.jb #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000161852.z.b	ENSGT00940000157473 #30	ENSGT00940000158621.e #29	ENSGT00940000162526 #32	ENSGT00950000183086.a.b #33	ENSGT00940000166488	ENSGT00940000156605 #34	ENSGT00940000157596	ENSGT00940000157498	ENSGT00940000155444
Acanthophiinae	ANCESTRAL SPECIES	44	ENSGT00390000000826	ENSGT00940000159033.e	ENSGT00940000156904 #7	ENSGT00510000049460 #8	ENSGT00940000159873 #9	ENSGT00390000005023.a #10	ENSGT00940000168928	ENSGT00390000017213.A #14	ENSGT00940000159164 #15	ENSGT01000000214413.b.a.b.a #16	ENSGT00940000168539	ENSGT00940000156036 #18	ENSGT00390000013354.c.a.a ##19	ENSGT00940000159748 #20	ENSGT00950000182805.a.a.b.a #21	ENSGT00940000153615.a.b #22	ENSGT00390000005242 #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a.jb #25	ENSGT00390000000305 #26	ENSGT01030000234564.b #27	ENSGT00940000161852.z.b	ENSGT00940000157473 #30	ENSGT00940000158621.e #29	ENSGT00940000162526 #32	ENSGT00950000183086.a.b #33	ENSGT00940000166488	ENSGT00940000156605 #34	ENSGT00940000157596	ENSGT00940000157498	ENSGT00940000155444
Eastern brown snake	MODERN SPECIES	59	LPAR5 (ENSPTXG00000019079)	ACRBP (ENSPTXG00000019083)	ING4 (ENSPTXG00000019084)	ZNF384 (ENSPTXG00000014216) #7	PIANP (ENSPTXG00000014220) #8	COPS7A (ENSPTXG00000014221) #9	MLF2 (ENSPTXG00000014223) #10	GPR162 (ENSPTXG00000014224) #14	P3H3 (ENSPTXG00000014225) #15	GNB3 (ENSPTXG00000014230) #16	ENSPTXG00000014233	USP5 (ENSPTXG00000014234) #18	TPI1 (ENSPTXG00000014237) ##19	LRRC23 (ENSPTXG00000014239) #20	ENO2 (ENSPTXG00000014244) #21	ATN1 (ENSPTXG00000014413) #22	C12orf57 (ENSPTXG00000014416) #23	PTPN6 (ENSPTXG00000014418) #24	PHB2 (ENSPTXG00000014420) #25	EMG1 (ENSPTXG00000014421) #26	LPCAT3 (ENSPTXG00000014422) #27	ENSPTXG00000014423	C1S (ENSPTXG00000014424) #30	C1R (ENSPTXG00000014426) #29	RBP5 (ENSPTXG00000014427) #32	CLSTN3 (ENSPTXG00000014428) #33	ENSPTXG00000014474	PEX5 (ENSPTXG00000014475) #34	CASR (ENSPTXG00000014476)	MAN1A2 (ENSPTXG00000014480)	ENSPTXG00000014484
Mainland tiger snake	MODERN SPECIES	284				COPS7A (ENSNSUG00000008932) #9	MLF2 (ENSNSUG00000008933) #10	ENSNSUG00000008935	ENSNSUG00000008971	GPR162 (ENSNSUG00000008972) #14	P3H3 (ENSNSUG00000008973) #15	GNB3 (ENSNSUG00000008974) #16	ENSNSUG00000008975	USP5 (ENSNSUG00000008976) #18	ENSNSUG00000008977 ##19	LRRC23 (ENSNSUG00000008982) #20	ENO2 (ENSNSUG00000008986) #21	ATN1 (ENSNSUG00000008990) #22	C12orf57 (ENSNSUG00000009030) #23	PTPN6 (ENSNSUG00000009031) #24	PHB2 (ENSNSUG00000009032) #25	EMG1 (ENSNSUG00000009033) #26	LPCAT3 (ENSNSUG00000009034) #27	ENSNSUG00000009035
Blue-lipped sea krait	MODERN SPECIES	10437																ATN1 (ENSLLTG00000011577) #22
Indian cobra	MODERN SPECIES	1	ENSNNAG00000014716	ENSNNAG00000014706	ZNF384 (ENSNNAG00000014615) #7	COPS7A (ENSNNAG00000014570) #9	MLF2 (ENSNNAG00000014552) #10	ENSNNAG00000014534	ENSNNAG00000014513	GPR162 (ENSNNAG00000014481) #14	P3H3 (ENSNNAG00000014400) #15	GNB3 (ENSNNAG00000014368) #16	ENSNNAG00000014319	USP5 (ENSNNAG00000014250) #18	ENSNNAG00000014227 ##19	LRRC23 (ENSNNAG00000014167) #20	ENO2 (ENSNNAG00000013851) #21	ATN1 (ENSNNAG00000013811) #22	C12orf57 (ENSNNAG00000013796) #23	PTPN6 (ENSNNAG00000013757) #24	PHB2 (ENSNNAG00000013745) #25	EMG1 (ENSNNAG00000013730) #26	LPCAT3 (ENSNNAG00000013697) #27	ENSNNAG00000013665	C1S (ENSNNAG00000013644) #30	C1R (ENSNNAG00000013353) #29	RBP5 (ENSNNAG00000013316) #32	CLSTN3 (ENSNNAG00000013267) #33	ENSNNAG00000013195	PEX5 (ENSNNAG00000013133) #34	CASR (ENSNNAG00000013066)	ENSNNAG00000013041	MAN1A2 (ENSNNAG00000012533)
Lizard	MODERN SPECIES	1065		COPS7A (ENSACAG00000006014) #9	MLF2 (ENSACAG00000005969) #10	ENSACAG00000005940 #12	ENSACAG00000036708	GPR162 (ENSACAG00000005932) #14	P3H3 (ENSACAG00000005838) #15	ENSACAG00000039180	GNB3 (ENSACAG00000005792) #16	ENSACAG00000005790	USP5 (ENSACAG00000005682) #18	TPI1 (ENSACAG00000005633) #19	ENSACAG00000036709	LRRC23 (ENSACAG00000041517) #20	ENO2 (ENSACAG00000005505) #21	ATN1 (ENSACAG00000005441) #22	C12orf57 (ENSACAG00000038218) #23	PHB2 (ENSACAG00000007158) #25
tuatara	MODERN SPECIES	1253	NOP2 (ENSSPUG00000015240)	CHD4 (ENSSPUG00000015131)	LPAR5 (ENSSPUG00000015098)	ENSSPUG00000014998	ING4 (ENSSPUG00000014965)	ZNF384 (ENSSPUG00000014935) #7	COPS7A (ENSSPUG00000014867) #9	MLF2 (ENSSPUG00000014850) #10	ENSSPUG00000014840 #13	GNB3 (ENSSPUG00000014719) #16	ENSSPUG00000014712	USP5 (ENSSPUG00000014695) #18	TPI1 (ENSSPUG00000014685) #19	LRRC23 (ENSSPUG00000014664) #20	ENO2 (ENSSPUG00000014585) #21	ATN1 (ENSSPUG00000014541) #22	PTPN6 (ENSSPUG00000014486) #24	ENSSPUG00000014474 #29	ENSSPUG00000014471 #29	LPCAT3 (ENSSPUG00000014459) #27	EMG1 (ENSSPUG00000014446) #26	ENSSPUG00000014408 #25	C1S (ENSSPUG00000014380) #30	ENSSPUG00000014359 #29	RBP5 (ENSSPUG00000014352) #32	CLSTN3 (ENSSPUG00000014315) #33	ENSSPUG00000014290	PEX5 (ENSSPUG00000014253) #34	CDK4 (ENSSPUG00000014234)	TSPAN31 (ENSSPUG00000014225)	ENSSPUG00000014176
Anura	ANCESTRAL SPECIES	104	ENSGT00940000159033	ENSGT00940000156904 #7	ENSGT01000000218818	ENSGT00510000049460 #8	ENSGT00390000005023.a #10	ENSGT00940000168928	ENSGT01010000229504	ENSGT00390000017213.A #14	ENSGT00390000001652.e	ENSGT00940000159164 #15	ENSGT01000000214413.b.a.b.a #16	ENSGT00940000168539	ENSGT00940000156036 #18	ENSGT00390000013354 #19	ENSGT00940000159748 #20	ENSGT00940000153615.a.b #22	ENSGT00390000005242 #23	ENSGT00940000159480 #24	ENSGT00950000183070.a.a #25	ENSGT00390000000305 #26	ENSGT00950000183086.a.b #33	ENSGT00940000162526 #32	ENSGT00940000158621 #29	ENSGT00940000157473.c #30	ENSGT01030000234564.b #27
Frog	MODERN SPECIES	7	znf384 (ENSXETG00000011532) #7	XB1017155 [provisional] (ENSXETG00000026414)	pianp (ENSXETG00000031467) #8	ENSXETG00000044747	ENSXETG00000035333	mlf2 (ENSXETG00000011538) #10	cd4 (ENSXETG00000036441)	gpr162 (ENSXETG00000035772) #14	XB5901519 [provisional:tprg1l] (ENSXETG00000043473)	rassf6 (ENSXETG00000011541) #15	gnb3 (ENSXETG00000009466) #16	usp5 (ENSXETG00000023925) #18	tpi1 (ENSXETG00000023924) #19	ENSXETG00000048212	lrrc23 (ENSXETG00000023923) #20	atn1 (ENSXETG00000023922) #22	ptpn6 (ENSXETG00000023918) #24	phb2 (ENSXETG00000023919) #25	emg1 (ENSXETG00000023917) #26	clstn3 (ENSXETG00000023916) #33	c1s (ENSXETG00000023912) #30	c1r (ENSXETG00000033339) #30	ENSXETG00000047157	necap1 (ENSXETG00000039955)	ENSXETG00000046983	pex5 (ENSXETG00000023910) #34	c3ar1 (ENSXETG00000023907)	c12orf57 (ENSXETG00000036471) #23	foxj2 (ENSXETG00000027639)	ENSXETG00000040851	ENSXETG00000047347
Leishan spiny toad	MODERN SPECIES	9	ZNF384 (ENSLLEG00000013153) #7	ENSLLEG00000013203	PIANP (ENSLLEG00000013255) #8	MLF2 (ENSLLEG00000013309) #10	ENSLLEG00000013367	ENSLLEG00000013414	GPR162 (ENSLLEG00000013469) #14	ENSLLEG00000013521	ENSLLEG00000013598	P3H3 (ENSLLEG00000013626) #15	GNB3 (ENSLLEG00000013724) #16	ENSLLEG00000013931	USP5 (ENSLLEG00000014032) #18	LRRC23 (ENSLLEG00000014958) #20	ENSLLEG00000015115	ATN1 (ENSLLEG00000015147) #22	ENSLLEG00000015316	C12orf57 (ENSLLEG00000015376) #23	PTPN6 (ENSLLEG00000015463) #24	PHB2 (ENSLLEG00000015655) #25	EMG1 (ENSLLEG00000015935) #26	CLSTN3 (ENSLLEG00000015980) #33	ENSLLEG00000016110	RBP5 (ENSLLEG00000016134) #32	C1R (ENSLLEG00000016229) #29	C1S (ENSLLEG00000016479) #30	LPCAT3 (ENSLLEG00000016603) #27	ENSLLEG00000016728	ENSLLEG00000016786	ENSLLEG00000016827	ENSLLEG00000016872
Coelacanth	MODERN SPECIES	3704																ATN1 (ENSLACG00000000377) #22	PTPN6 (ENSLACG00000002472) #24
Ciona	ANCESTRAL SPECIES																	ENSGT00940000153615.a.b #22
Ciona savignyi	MODERN SPECIES	181	ENSCSAVG00000003735	ENSCSAVG00000003686	ENSCSAVG00000003682	ENSCSAVG00000003679	ENSCSAVG00000003677	ENSCSAVG00000003675	ENSCSAVG00000003620	ENSCSAVG00000003525	ENSCSAVG00000003522	ENSCSAVG00000003498	ENSCSAVG00000003496	ENSCSAVG00000003493	ENSCSAVG00000003491	ENSCSAVG00000003489	ENSCSAVG00000003483	ENSCSAVG00000003482 #22	ENSCSAVG00000003480	ENSCSAVG00000003479	ENSCSAVG00000003474	ENSCSAVG00000003471	ENSCSAVG00000003383	ENSCSAVG00000003196	ENSCSAVG00000003185	ENSCSAVG00000003184	ENSCSAVG00000003179	ENSCSAVG00000003174	ENSCSAVG00000003170	ENSCSAVG00000003085	ENSCSAVG00000003080	ENSCSAVG00000003075	ENSCSAVG00000003062
Ciona intestinalis	MODERN SPECIES		ENSCING00000016787	ENSCING00000013711	ENSCING00000013708	ENSCING00000019981	ENSCING00000024327	ENSCING00000019054	ENSCING00000001879	ENSCING00000020867	ENSCING00000001888	ENSCING00000019666	ENSCING00000023673	ENSCING00000013710	ENSCING00000001907	ENSCING00000023833	ENSCING00000016786	ENSCING00000023596 #22	ENSCING00000023411	ENSCING00000013704	ENSCING00000013705	zf(traf/ring)-1 (ENSCING00000001849)	ENSCING00000001850	ENSCING00000022991	ENSCING00000022670	ENSCING00000023877	ENSCING00000020676	tgfbr-iia (ENSCING00000000348)	ENSCING00000019844	ENSCING00000004508	ENSCING00000023553	ENSCING00000022127	ENSCING00000003459