Rodentia_A	ANCESTRAL SPECIES		ENSGT00940000159723 #7	ENSGT00940000157831 #8	ENSGT00390000018208 #9	ENSGT00390000005914.a #10	ENSGT00940000153997.b.a.b #11	ENSGT01030000234556.a.b.a #13	ENSGT00390000001322 #14	ENSGT00510000047120	ENSGT00950000182900.C #15	ENSGT00940000157829 #16	ENSGT00390000006659 #17	ENSGT00390000018525.a.b #18	ENSGT00940000160000 #19	ENSGT01100000263557.A.b.b #20	ENSGT00390000010760 #21	ENSGT01030000234579.C #22	ENSGT00940000158946 #23	ENSGT00390000009400 #24	ENSGT00390000018244 #25	ENSGT00950000183022.a.b #26	ENSGT00940000158556 #27	ENSGT00940000161063 #28	ENSGT00940000162076	ENSGT00940000160168 #29	ENSGT00390000000464 #30	ENSGT00390000004791 #31	ENSGT00930000151043 #32	ENSGT00390000003574 #33	ENSGT00390000008371.a #34	ENSGT00390000014886 #35	ENSGT00940000159466 #36
Sciuridae	ANCESTRAL SPECIES		ENSGT00940000159723 #7	ENSGT00940000157831 #8	ENSGT00390000018208 #9	ENSGT00390000005914.a #10	ENSGT00940000153997.b.a.b #11	ENSGT01030000234556.a.b.a #13	ENSGT00390000001322 #14	ENSGT00510000047120	ENSGT00950000182900.C #15	ENSGT00940000157829 #16	ENSGT00390000006659 #17	ENSGT00390000018525.a.b #18	ENSGT00940000160000 #19	ENSGT01100000263557.A.b.b #20	ENSGT00390000010760 #21	ENSGT01030000234579.C #22	ENSGT00940000158946 #23	ENSGT00390000009400 #24	ENSGT00390000018244 #25	ENSGT00950000183022.a.b #26	ENSGT00940000158556 #27	ENSGT00940000161063 #28	ENSGT00940000162076	ENSGT00940000160168 #29	ENSGT00390000000464 #30	ENSGT00390000004791 #31	ENSGT00930000151043 #32	ENSGT00390000003574 #33	ENSGT00390000008371.a #34	ENSGT00390000014886 #35	ENSGT00940000159466 #36
Marmotini	ANCESTRAL SPECIES	34	ENSGT00940000159723 #7	ENSGT00940000157831 #8	ENSGT00390000018208 #9	ENSGT00390000005914.a #10	ENSGT00940000153997.b.a.b #11	ENSGT01030000234556.a.b.a #13	ENSGT00390000001322 #14	ENSGT00510000047120	ENSGT00950000182900.C #15	ENSGT00940000157829 #16	ENSGT00390000006659.q #17	ENSGT00390000018525.a.b #18	ENSGT00940000160000 #19	ENSGT01100000263557.A.b.b #20	ENSGT00390000010760 #21	ENSGT01030000234579.C #22	ENSGT00940000158946 #23	ENSGT00390000009400 #24	ENSGT00390000018244 #25	ENSGT00950000183022.a.b #26	ENSGT00940000158556 #27	ENSGT00940000161063 #28	ENSGT00940000162076	ENSGT00940000160168 #29	ENSGT00390000000464 #30	ENSGT00390000004791 #31	ENSGT00930000151043 #32	ENSGT00390000003574 #33	ENSGT00390000008371.a #34	ENSGT00390000014886 #35	ENSGT00940000159466 #36
Alpin marmot	MODERN SPECIES	29	ENSMMMG00000020541 #7	POU2F1 (ENSMMMG00000020142) #8	CD247 (ENSMMMG00000020139) #9	ENSMMMG00000020132 #10	RCSD1 (ENSMMMG00000020128) #11	ENSMMMG00000020122 #12	MPZL1 (ENSMMMG00000020120) #13	ADCY10 (ENSMMMG00000020099) #14	DCAF6 (ENSMMMG00000018848) #15	GPR161 (ENSMMMG00000018796) #16	TIPRL (ENSMMMG00000018786) #17	SFT2D2 (ENSMMMG00000018779) #18	TBX19 (ENSMMMG00000018775) #19	ENSMMMG00000018756 #20	DPT (ENSMMMG00000018754) #21	ATP1B1 (ENSMMMG00000018738) #22	NME7 (ENSMMMG00000018711) #23	BLZF1 (ENSMMMG00000018679) #24	CCDC181 (ENSMMMG00000018669) #25	SLC19A2 (ENSMMMG00000018667) #26	F5 (ENSMMMG00000018600) #27	SELP (ENSMMMG00000018590) #28	SELE (ENSMMMG00000018492) #29	METTL18 (ENSMMMG00000018443) #30	C1orf112 (ENSMMMG00000018413) #31	SCYL3 (ENSMMMG00000018300) #32	KIFAP3 (ENSMMMG00000018230) #33	NTMT2 (ENSMMMG00000018220) #34	ENSMMMG00000018202 #35	PRRX1 (ENSMMMG00000018176) #36	ENSMMMG00000018167 #37
Marmotini_b	ANCESTRAL SPECIES	28	ENSGT00940000159723 #7	ENSGT00940000157831 #8	ENSGT00390000018208 #9	ENSGT00390000005914.a #10	ENSGT00940000153997.b.a.b #11	ENSGT01030000234556.a.b.a #13	ENSGT00390000001322 #14	ENSGT00510000047120.q	ENSGT00950000182900.C #15	ENSGT00940000157829 #16	ENSGT00390000006659.q #17	ENSGT00390000018525.a.b #18	ENSGT00940000160000 #19	ENSGT01100000263557.A.b.b #20	ENSGT00390000010760 #21	ENSGT01030000234579.C #22	ENSGT00940000158946 #23	ENSGT00390000009400 #24	ENSGT00390000018244 #25	ENSGT00950000183022.a.b #26	ENSGT00940000158556 #27	ENSGT00940000161063 #28	ENSGT00940000162076	ENSGT00940000160168 #29	ENSGT00390000000464 #30	ENSGT00390000004791 #31	ENSGT00930000151043 #32	ENSGT00390000003574 #33	ENSGT00390000008371.a #34	ENSGT00390000014886 #35	ENSGT00940000159466 #36
Squirrel	MODERN SPECIES	81	STYXL2 (ENSSTOG00000010472) #7	POU2F1 (ENSSTOG00000005980) #8	CD247 (ENSSTOG00000027006) #9	ENSSTOG00000032814 #10	RCSD1 (ENSSTOG00000027565) #11	MPZL1 (ENSSTOG00000008875) #13	ADCY10 (ENSSTOG00000003252) #14	ENSSTOG00000034079	DCAF6 (ENSSTOG00000002913) #15	GPR161 (ENSSTOG00000024601) #16	ENSSTOG00000014921 #17	SFT2D2 (ENSSTOG00000030565) #18	TBX19 (ENSSTOG00000019913) #19	ENSSTOG00000014588 #20	DPT (ENSSTOG00000029188) #21	ATP1B1 (ENSSTOG00000011473) #22	NME7 (ENSSTOG00000011478) #23	BLZF1 (ENSSTOG00000011491) #24	CCDC181 (ENSSTOG00000023591) #25	SLC19A2 (ENSSTOG00000008889) #26	F5 (ENSSTOG00000008897) #27	SELP (ENSSTOG00000008931) #28	SELL (ENSSTOG00000008958)	SELE (ENSSTOG00000008973) #29	METTL18 (ENSSTOG00000003028) #30	C1orf112 (ENSSTOG00000003029) #31	SCYL3 (ENSSTOG00000003053) #32	KIFAP3 (ENSSTOG00000003065) #33	NTMT2 (ENSSTOG00000003081) #34	GORAB (ENSSTOG00000026492) #35	PRRX1 (ENSSTOG00000023298) #36
Arctic ground squirrel	MODERN SPECIES	314								DCAF6 (ENSUPAG00010011091) #15	GPR161 (ENSUPAG00010011079) #16	ENSUPAG00010011074	TIPRL (ENSUPAG00010011057) #17	SFT2D2 (ENSUPAG00010011039) #18	TBX19 (ENSUPAG00010011029) #19	ENSUPAG00010011020 #20	DPT (ENSUPAG00010011014) #21	ATP1B1 (ENSUPAG00010010998) #22	NME7 (ENSUPAG00010010951) #23	BLZF1 (ENSUPAG00010010941) #24	CCDC181 (ENSUPAG00010010935) #25	SLC19A2 (ENSUPAG00010010910) #26	F5 (ENSUPAG00010010738) #27	SELP (ENSUPAG00010010702) #28	ENSUPAG00010010678 #29	METTL18 (ENSUPAG00010010675) #30	C1orf112 (ENSUPAG00010010622) #31	SCYL3 (ENSUPAG00010010543) #32	KIFAP3 (ENSUPAG00010010519) #33	NTMT2 (ENSUPAG00010010514) #34	GORAB (ENSUPAG00010010512) #35	PRRX1 (ENSUPAG00010010497) #36	ENSUPAG00010010493 ##37
Eurasian red squirrel	MODERN SPECIES	3	GPA33 (ENSSVLG00005007183)	STYXL2 (ENSSVLG00005007140) #7	ENSSVLG00005006838 #8	CD247 (ENSSVLG00005006678) #9	CREG1 (ENSSVLG00005006640) #10	RCSD1 (ENSSVLG00005006562) #11	ADCY10 (ENSSVLG00005006248) #14	MPC2 (ENSSVLG00005006196)	DCAF6 (ENSSVLG00005005682) #15	GPR161 (ENSSVLG00005005499) #16	TIPRL (ENSSVLG00005005418) #17	SFT2D2 (ENSSVLG00005005367) #18	TBX19 (ENSSVLG00005024818) #19	ENSSVLG00005024789 #20	DPT (ENSSVLG00005024772) #21	ATP1B1 (ENSSVLG00005024750) #22	NME7 (ENSSVLG00005024722) #23	BLZF1 (ENSSVLG00005024682) #24	CCDC181 (ENSSVLG00005024651) #25	SLC19A2 (ENSSVLG00005024621) #26	F5 (ENSSVLG00005024439) #27	ENSSVLG00005024389	SELP (ENSSVLG00005024333) #28	SELL (ENSSVLG00005024196)	ENSSVLG00005024116 #29	ENSSVLG00005023929 #28	ENSSVLG00005023504 #29	METTL18 (ENSSVLG00005023411) #30	ENSSVLG00005023399	C1orf112 (ENSSVLG00005023367) #31	SCYL3 (ENSSVLG00005023322) #32
Hystricomorpha	ANCESTRAL SPECIES	2	ENSGT00940000159723 #7	ENSGT00940000157831 #8	ENSGT00390000018208 #9	ENSGT00390000005914.a #10	ENSGT00940000153997.b.a.b #11	ENSGT01030000234556.a.b.a #13	ENSGT00390000001322 #14	ENSGT00510000047120	ENSGT00950000182900.C #15	ENSGT00940000157829 #16	ENSGT00390000006659 #17	ENSGT00390000018525.a.b #18	ENSGT00940000160000 #19	ENSGT01100000263557.A.b.b #20	ENSGT00390000010760 #21	ENSGT01030000234579.C #22	ENSGT00940000158946 #23	ENSGT00390000009400 #24	ENSGT00390000018244 #25	ENSGT00950000183022.a.b #26	ENSGT00940000158556 #27	ENSGT00940000161063 #28	ENSGT00940000162076	ENSGT00940000160168 #29	ENSGT00390000000464 #30	ENSGT00390000004791 #31	ENSGT00930000151043 #32	ENSGT00940000159466 #36	ENSGT00390000014886 #35	ENSGT00390000008371.a #34	ENSGT00390000003574 #33
Naked mole-rat female	MODERN SPECIES	20	MPZL1 (ENSHGLG00000050117) #13	ENSHGLG00000042405 #14	ENSHGLG00000004748 #14	ENSHGLG00000050084	ENSHGLG00000034812	ENSHGLG00000020687	DCAF6 (ENSHGLG00000007535) #15	GPR161 (ENSHGLG00000009958) #16	TIPRL (ENSHGLG00000010990) #17	ENSHGLG00000038783 #18	TBX19 (ENSHGLG00000001534) #19	ENSHGLG00000001604 #20	ENSHGLG00000033916 #20	DPT (ENSHGLG00000001646) #21	ENSHGLG00000046760	ATP1B1 (ENSHGLG00000041771) #22	NME7 (ENSHGLG00000002119) #23	BLZF1 (ENSHGLG00000003011) #24	ENSHGLG00000050690 #25	ENSHGLG00000040907	SLC19A2 (ENSHGLG00000001890) #26	F5 (ENSHGLG00000002250) #27	SELP (ENSHGLG00000001876) #28	SELL (ENSHGLG00000048749)	ENSHGLG00000002768 #29	METTL18 (ENSHGLG00000020074) #30	ENSHGLG00000018896 #31	ENSHGLG00000019520 #32	ENSHGLG00000036520	ENSHGLG00000021140	ENSHGLG00000038928
Hystricomorpha_a	ANCESTRAL SPECIES	11	ENSGT00940000159723 #7	ENSGT00940000157831 #8	ENSGT00390000018208 #9	ENSGT00390000005914.a #10	ENSGT00940000153997.b.a.b #11	ENSGT01030000234556.a.b.a #13	ENSGT00390000001322 #14	ENSGT00510000047120	ENSGT00950000182900.C #15	ENSGT00940000157829 #16	ENSGT00390000006659 #17	ENSGT00390000018525.a.b #18	ENSGT00940000160000 #19	ENSGT01100000263557.A.b.b #20	ENSGT00390000010760 #21	ENSGT01030000234579.C #22	ENSGT00940000158946 #23	ENSGT00390000009400 #24	ENSGT00390000018244 #25	ENSGT00950000183022.a.b #26	ENSGT00940000158556 #27	ENSGT00940000161063 #28	ENSGT00940000162076	ENSGT00940000160168 #29	ENSGT00390000000464 #30	ENSGT00390000004791 #31	ENSGT00930000151043 #32	ENSGT00940000159466 #36	ENSGT00390000014886 #35	ENSGT00390000008371.a #34	ENSGT00390000003574 #33
Guinea pig	MODERN SPECIES	39	STYXL2 (ENSCPOG00000002322) #7	POU2F1 (ENSCPOG00000008237) #8	CD247 (ENSCPOG00000022786) #9	CREG1 (ENSCPOG00000010738) #10	RCSD1 (ENSCPOG00000033238) #11	MPZL1 (ENSCPOG00000038506) #13	ADCY10 (ENSCPOG00000003852) #14	MPC2 (ENSCPOG00000037670)	DCAF6 (ENSCPOG00000013095) #15	GPR161 (ENSCPOG00000032385) #16	TIPRL (ENSCPOG00000034819) #17	SFT2D2 (ENSCPOG00000039073) #18	TBX19 (ENSCPOG00000012456) #19	ENSCPOG00000032648 #20	DPT (ENSCPOG00000007553) #21	ATP1B1 (ENSCPOG00000039107) #22	NME7 (ENSCPOG00000004222) #23	BLZF1 (ENSCPOG00000007333) #24	CCDC181 (ENSCPOG00000024492) #25	SLC19A2 (ENSCPOG00000006894) #26	F5 (ENSCPOG00000006900) #27	SELP (ENSCPOG00000006911) #28	SELL (ENSCPOG00000035058)	SELE (ENSCPOG00000012409) #29	METTL18 (ENSCPOG00000027533) #30	C1orf112 (ENSCPOG00000012270) #31	SCYL3 (ENSCPOG00000026352) #32	PRRX1 (ENSCPOG00000014515) #36	GORAB (ENSCPOG00000012461) #35	NTMT2 (ENSCPOG00000039607) #34	ENSCPOG00000010161 #33
Hystricomorpha_b	ANCESTRAL SPECIES	8	ENSGT00940000159723 #7	ENSGT00940000157831 #8	ENSGT00390000018208 #9	ENSGT00390000005914.a #10	ENSGT00940000153997.b.a.b #11	ENSGT01030000234556.a.b.a #13	ENSGT00390000001322 #14	ENSGT00510000047120	ENSGT00950000182900.C #15	ENSGT00940000157829 #16	ENSGT00390000006659 #17	ENSGT00390000018525.a.b #18	ENSGT00940000160000 #19	ENSGT01100000263557.A.b.b #20	ENSGT00390000010760 #21	ENSGT01030000234579.C #22	ENSGT00940000158946 #23	ENSGT00390000009400 #24	ENSGT00390000018244 #25	ENSGT00950000183022.a.b #26	ENSGT00940000158556 #27	ENSGT00940000161063 #28	ENSGT00940000162076	ENSGT00940000160168 #29	ENSGT00390000000464 #30	ENSGT00390000004791 #31	ENSGT00930000151043 #32	ENSGT00940000159466 #36	ENSGT00390000014886 #35	ENSGT00390000008371.a #34	ENSGT00390000003574 #33
Degu	MODERN SPECIES	291	CREG1 (ENSODEG00000002026) #10	RCSD1 (ENSODEG00000002064) #11	MPZL1 (ENSODEG00000002143) #13	ENSODEG00000018781	ADCY10 (ENSODEG00000002246) #14	ENSODEG00000001149	DCAF6 (ENSODEG00000001207) #15	GPR161 (ENSODEG00000001359) #16	ENSODEG00000001396	ENSODEG00000001403	SFT2D2 (ENSODEG00000001437) #18	TBX19 (ENSODEG00000001542) #19	ENSODEG00000018697	ENSODEG00000001554 #20	DPT (ENSODEG00000001574) #21	ATP1B1 (ENSODEG00000001596) #22
Long-tailed chinchilla	MODERN SPECIES	169	STYXL2 (ENSCLAG00000006188) #7	ENSCLAG00000005067	POU2F1 (ENSCLAG00000005927) #8	CD247 (ENSCLAG00000005425) #9	CREG1 (ENSCLAG00000005740) #10	RCSD1 (ENSCLAG00000004726) #11	ADCY10 (ENSCLAG00000005189) #14	ENSCLAG00000004770	DCAF6 (ENSCLAG00000005742) #15	GPR161 (ENSCLAG00000005310) #16	ENSCLAG00000004496 #17	SFT2D2 (ENSCLAG00000007183) #18	TBX19 (ENSCLAG00000006520) #19	ENSCLAG00000005901 #20	DPT (ENSCLAG00000005439) #21	ATP1B1 (ENSCLAG00000009477) #22	NME7 (ENSCLAG00000007842) #23	BLZF1 (ENSCLAG00000006177) #24	CCDC181 (ENSCLAG00000005303) #25	SLC19A2 (ENSCLAG00000014197) #26	F5 (ENSCLAG00000011798) #27	SELP (ENSCLAG00000005532) #28	SELL (ENSCLAG00000005466)	SELE (ENSCLAG00000004901) #29	METTL18 (ENSCLAG00000017821) #30	C1orf112 (ENSCLAG00000012920) #31	SCYL3 (ENSCLAG00000006650) #32	PRRX1 (ENSCLAG00000005839) #36	GORAB (ENSCLAG00000004310) #35	ENSCLAG00000007665 #34	KIFAP3 (ENSCLAG00000011056) #33