Hystricomorpha	ANCESTRAL SPECIES	2	ENSGT00940000159723	ENSGT00940000157831	ENSGT00390000018208	ENSGT00390000005914.a	ENSGT00940000153997.b.a.b	ENSGT01030000234556.a.b.a #7	ENSGT00390000001322 #8	ENSGT00510000047120 #11	ENSGT00950000182900.C #13	ENSGT00940000157829 #14	ENSGT00390000006659 #15	ENSGT00390000018525.a.b #16	ENSGT00940000160000 #17	ENSGT01100000263557.A.b.b #18	ENSGT00390000010760 #20	ENSGT01030000234579.C #22	ENSGT00940000158946 #23	ENSGT00390000009400 #24	ENSGT00390000018244 #25	ENSGT00950000183022.a.b #27	ENSGT00940000158556 #28	ENSGT00940000161063 #29	ENSGT00940000162076 #30	ENSGT00940000160168 #31	ENSGT00390000000464 #32	ENSGT00390000004791 #33	ENSGT00930000151043 #34	ENSGT00940000159466	ENSGT00390000014886	ENSGT00390000008371.a	ENSGT00390000003574
Naked mole-rat female	MODERN SPECIES	20	MPZL1 (ENSHGLG00000050117) #7	ENSHGLG00000042405 #8	ENSHGLG00000004748 #9	ENSHGLG00000050084 #10	ENSHGLG00000034812 #11	ENSHGLG00000020687 #12	DCAF6 (ENSHGLG00000007535) #13	GPR161 (ENSHGLG00000009958) #14	TIPRL (ENSHGLG00000010990) #15	ENSHGLG00000038783 #16	TBX19 (ENSHGLG00000001534) #17	ENSHGLG00000001604 #18	ENSHGLG00000033916 #19	DPT (ENSHGLG00000001646) #20	ENSHGLG00000046760 #21	ATP1B1 (ENSHGLG00000041771) #22	NME7 (ENSHGLG00000002119) #23	BLZF1 (ENSHGLG00000003011) #24	ENSHGLG00000050690 #25	ENSHGLG00000040907 #26	SLC19A2 (ENSHGLG00000001890) #27	F5 (ENSHGLG00000002250) #28	SELP (ENSHGLG00000001876) #29	SELL (ENSHGLG00000048749) #30	ENSHGLG00000002768 #31	METTL18 (ENSHGLG00000020074) #32	ENSHGLG00000018896 #33	ENSHGLG00000019520 #34	ENSHGLG00000036520 #35	ENSHGLG00000021140 #36	ENSHGLG00000038928 #37
Hystricomorpha_a	ANCESTRAL SPECIES	11	ENSGT00940000159723	ENSGT00940000157831	ENSGT00390000018208	ENSGT00390000005914.a	ENSGT00940000153997.b.a.b	ENSGT01030000234556.a.b.a #7	ENSGT00390000001322 #8	ENSGT00510000047120 #11	ENSGT00950000182900.C #13	ENSGT00940000157829 #14	ENSGT00390000006659 #15	ENSGT00390000018525.a.b #16	ENSGT00940000160000 #17	ENSGT01100000263557.A.b.b #18	ENSGT00390000010760 #20	ENSGT01030000234579.C #22	ENSGT00940000158946 #23	ENSGT00390000009400 #24	ENSGT00390000018244 #25	ENSGT00950000183022.a.b #27	ENSGT00940000158556 #28	ENSGT00940000161063 #29	ENSGT00940000162076 #30	ENSGT00940000160168 #31	ENSGT00390000000464 #32	ENSGT00390000004791 #33	ENSGT00930000151043 #34	ENSGT00940000159466	ENSGT00390000014886	ENSGT00390000008371.a	ENSGT00390000003574
Guinea pig	MODERN SPECIES	39	STYXL2 (ENSCPOG00000002322)	POU2F1 (ENSCPOG00000008237)	CD247 (ENSCPOG00000022786)	CREG1 (ENSCPOG00000010738)	RCSD1 (ENSCPOG00000033238)	MPZL1 (ENSCPOG00000038506) #7	ADCY10 (ENSCPOG00000003852) #8	MPC2 (ENSCPOG00000037670) #11	DCAF6 (ENSCPOG00000013095) #13	GPR161 (ENSCPOG00000032385) #14	TIPRL (ENSCPOG00000034819) #15	SFT2D2 (ENSCPOG00000039073) #16	TBX19 (ENSCPOG00000012456) #17	ENSCPOG00000032648 #18	DPT (ENSCPOG00000007553) #20	ATP1B1 (ENSCPOG00000039107) #22	NME7 (ENSCPOG00000004222) #23	BLZF1 (ENSCPOG00000007333) #24	CCDC181 (ENSCPOG00000024492) #25	SLC19A2 (ENSCPOG00000006894) #27	F5 (ENSCPOG00000006900) #28	SELP (ENSCPOG00000006911) #29	SELL (ENSCPOG00000035058) #30	SELE (ENSCPOG00000012409) #31	METTL18 (ENSCPOG00000027533) #32	C1orf112 (ENSCPOG00000012270) #33	SCYL3 (ENSCPOG00000026352) #34	PRRX1 (ENSCPOG00000014515)	GORAB (ENSCPOG00000012461)	NTMT2 (ENSCPOG00000039607)	ENSCPOG00000010161
Hystricomorpha_b	ANCESTRAL SPECIES	8	ENSGT00940000159723	ENSGT00940000157831	ENSGT00390000018208	ENSGT00390000005914.a	ENSGT00940000153997.b.a.b	ENSGT01030000234556.a.b.a #7	ENSGT00390000001322 #8	ENSGT00510000047120 #11	ENSGT00950000182900.C #13	ENSGT00940000157829 #14	ENSGT00390000006659 #15	ENSGT00390000018525.a.b #16	ENSGT00940000160000 #17	ENSGT01100000263557.A.b.b #18	ENSGT00390000010760 #20	ENSGT01030000234579.C #22	ENSGT00940000158946 #23	ENSGT00390000009400 #24	ENSGT00390000018244 #25	ENSGT00950000183022.a.b #27	ENSGT00940000158556 #28	ENSGT00940000161063 #29	ENSGT00940000162076 #30	ENSGT00940000160168 #31	ENSGT00390000000464 #32	ENSGT00390000004791 #33	ENSGT00930000151043 #34	ENSGT00940000159466	ENSGT00390000014886	ENSGT00390000008371.a	ENSGT00390000003574
Degu	MODERN SPECIES	291	CREG1 (ENSODEG00000002026)	RCSD1 (ENSODEG00000002064)	MPZL1 (ENSODEG00000002143) #7	ENSODEG00000018781	ADCY10 (ENSODEG00000002246) #8	ENSODEG00000001149 #11	DCAF6 (ENSODEG00000001207) #13	GPR161 (ENSODEG00000001359) #14	ENSODEG00000001396	ENSODEG00000001403	SFT2D2 (ENSODEG00000001437) #16	TBX19 (ENSODEG00000001542) #17	ENSODEG00000018697	ENSODEG00000001554 #18	DPT (ENSODEG00000001574) #20	ATP1B1 (ENSODEG00000001596) #22
Long-tailed chinchilla	MODERN SPECIES	169	STYXL2 (ENSCLAG00000006188)	ENSCLAG00000005067	POU2F1 (ENSCLAG00000005927)	CD247 (ENSCLAG00000005425)	CREG1 (ENSCLAG00000005740)	RCSD1 (ENSCLAG00000004726)	ADCY10 (ENSCLAG00000005189) #8	ENSCLAG00000004770 #11	DCAF6 (ENSCLAG00000005742) #13	GPR161 (ENSCLAG00000005310) #14	ENSCLAG00000004496 #15	SFT2D2 (ENSCLAG00000007183) #16	TBX19 (ENSCLAG00000006520) #17	ENSCLAG00000005901 #18	DPT (ENSCLAG00000005439) #20	ATP1B1 (ENSCLAG00000009477) #22	NME7 (ENSCLAG00000007842) #23	BLZF1 (ENSCLAG00000006177) #24	CCDC181 (ENSCLAG00000005303) #25	SLC19A2 (ENSCLAG00000014197) #27	F5 (ENSCLAG00000011798) #28	SELP (ENSCLAG00000005532) #29	SELL (ENSCLAG00000005466) #30	SELE (ENSCLAG00000004901) #31	METTL18 (ENSCLAG00000017821) #32	C1orf112 (ENSCLAG00000012920) #33	SCYL3 (ENSCLAG00000006650) #34	PRRX1 (ENSCLAG00000005839)	GORAB (ENSCLAG00000004310)	ENSCLAG00000007665	KIFAP3 (ENSCLAG00000011056)