Hystricomorpha_a ANCESTRAL SPECIES 4 ENSGT00940000160751 ENSGT00390000017913.h ENSGT00940000158168 ENSGT00390000015980 ENSGT00390000004096 ENSGT00940000157208 ENSGT00390000012265 ENSGT00940000162209 #14 ENSGT00940000161266 #15 ENSGT00940000156456 #16 ENSGT00940000161601 #17 ENSGT00940000160075 #18 ENSGT00390000002757.u #19 ENSGT00390000015520 #20 ENSGT00940000154964 #21 ENSGT00940000153497.E #22 ENSGT00940000158435 #23 ENSGT00890000139496 #24 ENSGT00940000155893.b #25 ENSGT00940000154509 #26 ENSGT00390000003738.a.b #27 ENSGT00940000155708 #28 ENSGT00950000183196.B #29 ENSGT00940000155015 #30 ENSGT00390000016029 #31 ENSGT00940000157005 #32 ENSGT01100000263484.C.b.a #33 ENSGT01070000253816.b #34 ENSGT00940000156699 #36 ENSGT00940000156299 ENSGT00390000015332 Hystricomorpha_b ANCESTRAL SPECIES 9 ENSGT00940000160751 ENSGT00390000017913.h ENSGT00940000158168 ENSGT00390000015980 ENSGT00390000004096 ENSGT00940000157208 ENSGT00390000012265 ENSGT00940000162209 #14 ENSGT00940000161266 #15 ENSGT00940000156456 #16 ENSGT00940000161601 #17 ENSGT00940000160075 #18 ENSGT00390000002757.u #19 ENSGT00390000015520 #20 ENSGT00940000154964 #21 ENSGT00940000153497.E #22 ENSGT00940000158435 #23 ENSGT00890000139496 #24 ENSGT00940000155893.b #25 ENSGT00940000154509 #26 ENSGT00390000003738.a.b.n.a #27 ENSGT00940000155708 #28 ENSGT00950000183196.B #29 ENSGT00940000155015 #30 ENSGT00390000016029 #31 ENSGT00940000157005 #32 ENSGT01100000263484.C.b.a #33 ENSGT01070000253816.b #34 ENSGT00940000156699 #36 ENSGT00940000156299 ENSGT00390000015332 Long-tailed chinchilla MODERN SPECIES 127 ACTRT3 (ENSCLAG00000013559) #14 MYNN (ENSCLAG00000015808) #15 LRRC34 (ENSCLAG00000014039) #16 LRRIQ4 (ENSCLAG00000014708) #17 SAMD7 (ENSCLAG00000011650) #18 ENSCLAG00000010122 #19 GPR160 (ENSCLAG00000011119) #20 PHC3 (ENSCLAG00000012350) #21 PRKCI (ENSCLAG00000014828) #22 SKIL (ENSCLAG00000011070) #23 CLDN11 (ENSCLAG00000009889) #24 SLC7A14 (ENSCLAG00000010996) #25 RPL22L1 (ENSCLAG00000012186) #26 ENSCLAG00000013461 #27 SLC2A2 (ENSCLAG00000014131) #28 TNIK (ENSCLAG00000011229) #29 PLD1 (ENSCLAG00000012419) #30 TMEM212 (ENSCLAG00000016037) #31 FNDC3B (ENSCLAG00000015717) #32 GHSR (ENSCLAG00000012973) #33 TNFSF10 (ENSCLAG00000015552) #34 ENSCLAG00000017893 #35 NCEH1 (ENSCLAG00000011865) #36 ENSCLAG00000013454 #37 Degu MODERN SPECIES 96 ENSODEG00000007858 ENSODEG00000008341 ENSODEG00000007821 GOLIM4 (ENSODEG00000009086) MECOM (ENSODEG00000008418) ENSODEG00000008227 ACTRT3 (ENSODEG00000008290) #14 ENSODEG00000019738 MYNN (ENSODEG00000008889) #15 LRRC34 (ENSODEG00000009647) #16 LRRIQ4 (ENSODEG00000008080) #17 ENSODEG00000009560 ENSODEG00000008380 #18 ENSODEG00000010940 #19 PHC3 (ENSODEG00000007882) #21 PRKCI (ENSODEG00000007927) #22 ENSODEG00000019467 SKIL (ENSODEG00000007781) #23 CLDN11 (ENSODEG00000008979) #24 SLC7A14 (ENSODEG00000008674) #25 ENSODEG00000009861 ENSODEG00000008003 #26 ENSODEG00000007731 #27 ENSODEG00000019567 SLC2A2 (ENSODEG00000008360) #28 TNIK (ENSODEG00000007936) #29 PLD1 (ENSODEG00000006929) #30 ENSODEG00000019876 ##35 TMEM212 (ENSODEG00000010772) #31 ENSODEG00000007581 #32 GHSR (ENSODEG00000007538) #33 Guinea pig DUPLICATION Guinea pig MODERN SPECIES 100 PDCD10 (ENSCPOG00000011955) SERPINI1 (ENSCPOG00000011960) ENSCPOG00000033855 GOLIM4 (ENSCPOG00000015646) MECOM (ENSCPOG00000013572) ENSCPOG00000012256 ACTRT3 (ENSCPOG00000011636) #14 MYNN (ENSCPOG00000011640) #15 LRRC34 (ENSCPOG00000011644) #16 LRRIQ4 (ENSCPOG00000011649) #17 SAMD7 (ENSCPOG00000025571) #18 SEC62 (ENSCPOG00000040337) #19 GPR160 (ENSCPOG00000007388) #20 PHC3 (ENSCPOG00000005870) #21 PRKCI (ENSCPOG00000015212) #22 SKIL (ENSCPOG00000006684) #23 CLDN11 (ENSCPOG00000033278) #24 SLC7A14 (ENSCPOG00000011615) #25 ENSCPOG00000009215 #26 EIF5A2 (ENSCPOG00000012594) #27 SLC2A2 (ENSCPOG00000012055) #28 TNIK (ENSCPOG00000012060) #29 PLD1 (ENSCPOG00000010721) #30 TMEM212 (ENSCPOG00000000573) #31 FNDC3B (ENSCPOG00000011705) #32 GHSR (ENSCPOG00000014041) #33 TNFSF10 (ENSCPOG00000031635) #34 Guinea pig DUPLICATION Guinea pig DUPLICATION Guinea pig DUPLICATION Guinea pig DUPLICATION Guinea pig DUPLICATION Guinea pig DUPLICATION Guinea pig DUPLICATION Guinea pig DUPLICATION Guinea pig MODERN SPECIES 292 ENSCPOG00000031078 #22 Guinea pig MODERN SPECIES 254 ENSCPOG00000037470 #22 Guinea pig MODERN SPECIES 34 ENSCPOG00000038236 #22 NCAM2 (ENSCPOG00000002125) TMPRSS15 (ENSCPOG00000005428) CHODL (ENSCPOG00000005427) C21orf91 (ENSCPOG00000036052) BTG3 (ENSCPOG00000010078) CXADR (ENSCPOG00000010075) USP25 (ENSCPOG00000002031) NRIP1 (ENSCPOG00000031629) SAMSN1 (ENSCPOG00000006019) HSPA13 (ENSCPOG00000007860) RBM11 (ENSCPOG00000005309) LIPI (ENSCPOG00000039776) ROBO2 (ENSCPOG00000012716) ROBO1 (ENSCPOG00000010039) GBE1 (ENSCPOG00000006294) Guinea pig DUPLICATION Guinea pig MODERN SPECIES 34 ENSCPOG00000026024 #22 ENSCPOG00000034571 #22 NSUN3 (ENSCPOG00000034439) STX19 (ENSCPOG00000002561) ARL13B (ENSCPOG00000002558) PROS1 (ENSCPOG00000000725) EPHA3 (ENSCPOG00000004938) ENSCPOG00000023944 C3orf38 (ENSCPOG00000007963) ZNF654 (ENSCPOG00000013512) CGGBP1 (ENSCPOG00000033764) POU1F1 (ENSCPOG00000006596) CHMP2B (ENSCPOG00000038857) VGLL3 (ENSCPOG00000024214) CADM2 (ENSCPOG00000009902) GBE1 (ENSCPOG00000006294) ROBO1 (ENSCPOG00000010039) Guinea pig MODERN SPECIES 34 GBE1 (ENSCPOG00000006294) CADM2 (ENSCPOG00000009902) VGLL3 (ENSCPOG00000024214) CHMP2B (ENSCPOG00000038857) POU1F1 (ENSCPOG00000006596) CGGBP1 (ENSCPOG00000033764) ZNF654 (ENSCPOG00000013512) C3orf38 (ENSCPOG00000007963) ENSCPOG00000023944 EPHA3 (ENSCPOG00000004938) PROS1 (ENSCPOG00000000725) ARL13B (ENSCPOG00000002558) STX19 (ENSCPOG00000002561) NSUN3 (ENSCPOG00000034439) ENSCPOG00000034571 #22 ENSCPOG00000026024 #22 Guinea pig DUPLICATION Guinea pig DUPLICATION Guinea pig DUPLICATION Guinea pig MODERN SPECIES 276 ENSCPOG00000038748 ENSCPOG00000037803 #22 Guinea pig MODERN SPECIES 106 ENSCPOG00000038587 #22 ENSCPOG00000024505 ENSCPOG00000039443 #22 GABRR3 (ENSCPOG00000012911) RIOX2 (ENSCPOG00000034933) ENSCPOG00000011074 ARL6 (ENSCPOG00000005344) ENSCPOG00000003784 ENSCPOG00000021384 Guinea pig MODERN SPECIES 106 ENSCPOG00000038587 #22 ENSCPOG00000024505 ENSCPOG00000039443 #22 GABRR3 (ENSCPOG00000012911) RIOX2 (ENSCPOG00000034933) ENSCPOG00000011074 ARL6 (ENSCPOG00000005344) ENSCPOG00000003784 ENSCPOG00000021384 Guinea pig DUPLICATION Guinea pig MODERN SPECIES 358 ENSCPOG00000039824 #22 Guinea pig MODERN SPECIES 441 ENSCPOG00000023559 #22 Guinea pig MODERN SPECIES 308 ENSCPOG00000024692 #22 Guinea pig MODERN SPECIES 380 ENSCPOG00000038225 #22 Guinea pig DUPLICATION Guinea pig DUPLICATION Guinea pig DUPLICATION Guinea pig DUPLICATION Guinea pig DUPLICATION Guinea pig DUPLICATION Guinea pig DUPLICATION Guinea pig MODERN SPECIES 413 ENSCPOG00000031205 #22 Guinea pig MODERN SPECIES 367 ENSCPOG00000039873 #22 Guinea pig MODERN SPECIES 216 ENSCPOG00000040064 #22 ENSCPOG00000031565 #22 Guinea pig MODERN SPECIES 280 ENSCPOG00000038231 #22 ENSCPOG00000037929 Guinea pig MODERN SPECIES 216 ENSCPOG00000031565 #22 ENSCPOG00000040064 #22 Guinea pig MODERN SPECIES 351 ENSCPOG00000020481 #22 Guinea pig MODERN SPECIES 343 ENSCPOG00000026323 ENSCPOG00000032140 #22 Guinea pig MODERN SPECIES 35 ENSCPOG00000026689 #22 ENSCPOG00000033142 CASR (ENSCPOG00000013000) CD86 (ENSCPOG00000020973) ILDR1 (ENSCPOG00000013173) SLC15A2 (ENSCPOG00000006934) EAF2 (ENSCPOG00000006427) IQCB1 (ENSCPOG00000006419) GOLGB1 (ENSCPOG00000006405) HCLS1 (ENSCPOG00000006399) FBXO40 (ENSCPOG00000013228) ENSCPOG00000026454 STXBP5L (ENSCPOG00000008283) GTF2E1 (ENSCPOG00000009651) ENSCPOG00000022678 RABL3 (ENSCPOG00000009645) Guinea pig MODERN SPECIES 322 ENSCPOG00000019431 #22