Hystricomorpha	ANCESTRAL SPECIES	9	ENSGT00940000161214	ENSGT00940000157309	ENSGT00940000157098	ENSGT00390000010948 #9	ENSGT01040000240451.a.b.a #11	ENSGT00940000159587 #12	ENSGT00390000016293 #13	ENSGT00940000161297 #14	ENSGT00390000017840 #15	ENSGT00950000182905.a.a.b #16	ENSGT00940000158208 #17	ENSGT00940000154770 #18	ENSGT00940000160351 #19	ENSGT00940000158956 #20	ENSGT00530000063603.A #21	ENSGT00390000006679.a #22	ENSGT01070000253775.a.d.b #23	ENSGT00940000160422 #24	ENSGT00940000161404 #25	ENSGT00940000156890.a.a #26	ENSGT00940000159439 #27	ENSGT00390000003427 #28	ENSGT00530000064137.a.a #29	ENSGT00390000006305 #31	ENSGT00550000075017 #32	ENSGT00950000182860.a.b.a #33	ENSGT00940000160235 #34	ENSGT00940000162107 #35	ENSGT00940000160065 #36	ENSGT00940000155609 #37	ENSGT00950000183092.a
Hystricomorpha_a	ANCESTRAL SPECIES	7	ENSGT00940000161214	ENSGT00940000157309	ENSGT00940000157098	ENSGT00390000010948 #9	ENSGT01040000240451.a.b.a #11	ENSGT00940000159587 #12	ENSGT00390000016293 #13	ENSGT00940000161297 #14	ENSGT00390000017840 #15	ENSGT00950000182905.a.a.b #16	ENSGT00940000158208 #17	ENSGT00940000154770 #18	ENSGT00940000160351 #19	ENSGT00940000158956 #20	ENSGT00530000063603.A #21	ENSGT00390000006679.a #22	ENSGT01070000253775.a.d.b #23	ENSGT00940000160422 #24	ENSGT00940000161404 #25	ENSGT00940000156890.a.a #26	ENSGT00940000159439 #27	ENSGT00390000003427 #28	ENSGT00530000064137.a.a #29	ENSGT00390000006305 #31	ENSGT00550000075017 #32	ENSGT00950000182860.a.b.a #33	ENSGT00940000160235 #34	ENSGT00940000162107 #35	ENSGT00940000160065 #36	ENSGT00940000155609 #37	ENSGT00950000183092.a
Hystricomorpha_b	ANCESTRAL SPECIES	13	ENSGT00940000161214	ENSGT00940000157309	ENSGT00940000157098	ENSGT00390000010948 #9	ENSGT01040000240451.a.b.a #11	ENSGT00940000159587 #12	ENSGT00390000016293 #13	ENSGT00940000161297 #14	ENSGT00390000017840 #15	ENSGT00950000182905.a.a.b #16	ENSGT00940000158208 #17	ENSGT00940000154770 #18	ENSGT00940000160351 #19	ENSGT00940000158956 #20	ENSGT00530000063603.A #21	ENSGT00390000006679.a #22	ENSGT01070000253775.a.d.b #23	ENSGT00940000160422 #24	ENSGT00940000161404 #25	ENSGT00940000156890.a.a #26	ENSGT00940000159439 #27	ENSGT00390000003427 #28	ENSGT00530000064137.a.a #29	ENSGT00390000006305 #31	ENSGT00550000075017 #32	ENSGT00950000182860.a.b.a #33	ENSGT00940000160235 #34	ENSGT00940000162107 #35	ENSGT00940000160065 #36	ENSGT00940000155609 #37	ENSGT00950000183092.a
Degu	MODERN SPECIES	327	ENSODEG00000018814 #7	ENSODEG00000002068 #8	ATP23 (ENSODEG00000002049) #9	ENSODEG00000002035 #10	ENSODEG00000002015 #11	AVIL (ENSODEG00000001940) #12	TSFM (ENSODEG00000001882) #13	EEF1AKMT3 (ENSODEG00000001854) #14	METTL1 (ENSODEG00000001799) #15	CYP27B1 (ENSODEG00000001745) #16	MARCHF9 (ENSODEG00000001713) #17	ENSODEG00000001702 #18	TSPAN31 (ENSODEG00000001691) #19	AGAP2 (ENSODEG00000001675) #20	OS9 (ENSODEG00000001586) #21	B4GALNT1 (ENSODEG00000002156) #22	ENSODEG00000002108 #23	ARHGEF25 (ENSODEG00000002032) #24	DTX3 (ENSODEG00000001975) #25	PIP4K2C (ENSODEG00000001958) #26	KIF5A (ENSODEG00000001884) #27	DCTN2 (ENSODEG00000001844) #28	ENSODEG00000001830 #29	ENSODEG00000001814 #30	DDIT3 (ENSODEG00000001801) #31	MARS1 (ENSODEG00000001752) #32	ARHGAP9 (ENSODEG00000001619) #33	GLI1 (ENSODEG00000001558) #34	INHBE (ENSODEG00000001543) #35	INHBC (ENSODEG00000001532) #36	ENSODEG00000001520 #37
Long-tailed chinchilla	MODERN SPECIES	165	TAFA2 (ENSCLAG00000015199)	SLC16A7 (ENSCLAG00000011812)	LRIG3 (ENSCLAG00000010704)	ATP23 (ENSCLAG00000010629) #9	CTDSP2 (ENSCLAG00000015950) #11	AVIL (ENSCLAG00000009924) #12	TSFM (ENSCLAG00000009226) #13	EEF1AKMT3 (ENSCLAG00000012713) #14	METTL1 (ENSCLAG00000014968) #15	CYP27B1 (ENSCLAG00000013845) #16	TSPAN31 (ENSCLAG00000013511) #19	CDK4 (ENSCLAG00000012995) #18	MARCHF9 (ENSCLAG00000012609) #17	AGAP2 (ENSCLAG00000009332) #20	OS9 (ENSCLAG00000010151) #21	B4GALNT1 (ENSCLAG00000009160) #22	ENSCLAG00000011703 #23	ARHGEF25 (ENSCLAG00000010120) #24	DTX3 (ENSCLAG00000008560) #25	PIP4K2C (ENSCLAG00000012549) #26	KIF5A (ENSCLAG00000011917) #27	DCTN2 (ENSCLAG00000010761) #28	MBD6 (ENSCLAG00000010083) #29	DDIT3 (ENSCLAG00000009376) #31	MARS1 (ENSCLAG00000012164) #32	ARHGAP9 (ENSCLAG00000015213) #33	GLI1 (ENSCLAG00000010833) #34	INHBE (ENSCLAG00000013199) #35	INHBC (ENSCLAG00000015051) #36	R3HDM2 (ENSCLAG00000011997) #37	STAC3 (ENSCLAG00000017371)
Guinea pig	MODERN SPECIES	9	TAFA2 (ENSCPOG00000035228)	SLC16A7 (ENSCPOG00000010219)	LRIG3 (ENSCPOG00000011502)	ATP23 (ENSCPOG00000039300) #9	CTDSP2 (ENSCPOG00000039281) #11	AVIL (ENSCPOG00000012226) #12	TSFM (ENSCPOG00000037732) #13	EEF1AKMT3 (ENSCPOG00000011497) #14	METTL1 (ENSCPOG00000000066) #15	CYP27B1 (ENSCPOG00000019603) #16	MARCHF9 (ENSCPOG00000002671) #17	CDK4 (ENSCPOG00000033131) #18	TSPAN31 (ENSCPOG00000011494) #19	AGAP2 (ENSCPOG00000022267) #20	OS9 (ENSCPOG00000002667) #21	B4GALNT1 (ENSCPOG00000003202) #22	ENSCPOG00000033620 #23	ARHGEF25 (ENSCPOG00000020097) #24	PIP4K2C (ENSCPOG00000022071) #26	KIF5A (ENSCPOG00000012882) #27	DCTN2 (ENSCPOG00000012879) #28	MBD6 (ENSCPOG00000012873) #29	DDIT3 (ENSCPOG00000012871) #31	MARS1 (ENSCPOG00000012866) #32	ARHGAP9 (ENSCPOG00000014343) #33	GLI1 (ENSCPOG00000005414) #34	INHBE (ENSCPOG00000031115) #35	INHBC (ENSCPOG00000033593) #36	R3HDM2 (ENSCPOG00000009217) #37	STAC3 (ENSCPOG00000006200)	NDUFA4L2 (ENSCPOG00000035802)
Naked mole-rat female	MODERN SPECIES	8	ENSHGLG00000049232	ENSHGLG00000000518	ENSHGLG00000039977 #9	CTDSP2 (ENSHGLG00000005482) #11	AVIL (ENSHGLG00000006939) #12	TSFM (ENSHGLG00000035817) #13	EEF1AKMT3 (ENSHGLG00000014041) #14	METTL1 (ENSHGLG00000040341) #15	CYP27B1 (ENSHGLG00000018056) #16	MARCHF9 (ENSHGLG00000031879) #17	CDK4 (ENSHGLG00000034505) #18	TSPAN31 (ENSHGLG00000009305) #19	AGAP2 (ENSHGLG00000009759) #20	OS9 (ENSHGLG00000018868) #21	ENSHGLG00000032575	B4GALNT1 (ENSHGLG00000016963) #22	ENSHGLG00000015674 #23	ENSHGLG00000044481	ENSHGLG00000035780 ##23	ARHGEF25 (ENSHGLG00000018169) #24	DTX3 (ENSHGLG00000033032) #25	PIP4K2C (ENSHGLG00000016024) #26	ENSHGLG00000043824	DCTN2 (ENSHGLG00000013797) #28	ENSHGLG00000047970 #29	ENSHGLG00000041807	MARS1 (ENSHGLG00000013493) #32	INHBE (ENSHGLG00000032463) #35	ENSHGLG00000042046	NDUFA4L2 (ENSHGLG00000045559)	ENSHGLG00000050142