Murinae	ANCESTRAL SPECIES	2	ENSGT00940000158863 #7	ENSGT00940000159497 #8	ENSGT00940000155059 #9	ENSGT00940000154502 #10	ENSGT00940000153141.B.a #11	ENSGT00520000055567.a.a.b #12	ENSGT00950000183056.B.b #13	ENSGT00940000160216 #14	ENSGT00940000154383.s.a	ENSGT00950000183149.A #15	ENSGT00940000163618 #16	ENSGT00940000156731 #17	ENSGT00390000001029 #19	ENSGT00940000159246 #20	ENSGT00940000160233 #21	ENSGT00390000003248.a.a.a.b.db #22	ENSGT00940000158011 #23	ENSGT00390000018056 #24	ENSGT00390000011782 #25	ENSGT01070000253766.A.b	ENSGT00940000154242.b	ENSGT00940000156694	ENSGT00390000009040	ENSGT00940000154185	ENSGT00940000155121	ENSGT00940000159123	ENSGT00390000003289	ENSGT00940000157341	ENSGT00940000161936	ENSGT00390000015871	ENSGT00940000159969.a
Mus	ANCESTRAL SPECIES	3	ENSGT00940000158863 #7	ENSGT00940000159497 #8	ENSGT00940000155059 #9	ENSGT00940000154502 #10	ENSGT00940000153141.B.a #11	ENSGT00520000055567.a.a.b #12	ENSGT00950000183056.B.b #13	ENSGT00940000160216 #14	ENSGT00940000154383.s.a	ENSGT00950000183149.A #15	ENSGT00940000163618 #16	ENSGT00940000156731 #17	ENSGT00390000001029 #19	ENSGT00940000159246 #20	ENSGT00940000160233 #21	ENSGT00390000003248.a.a.a.b.db #22	ENSGT00940000158011 #23	ENSGT00390000018056 #24	ENSGT01100000265193	ENSGT01070000253766.A.b	ENSGT00940000154242.b	ENSGT00940000156694	ENSGT00390000009040	ENSGT00940000154185	ENSGT00940000155121	ENSGT00940000159123	ENSGT00390000003289	ENSGT00940000157341	ENSGT00940000161936	ENSGT00390000015871	ENSGT00940000159969.a
Mus_A	ANCESTRAL SPECIES	3	ENSGT00940000158863 #7	ENSGT00940000159497 #8	ENSGT00940000155059 #9	ENSGT00940000154502 #10	ENSGT00940000153141.B.a #11	ENSGT00520000055567.a.a.b #12	ENSGT00950000183056.B.b #13	ENSGT00940000160216 #14	ENSGT00940000154383.s.a	ENSGT00950000183149.A #15	ENSGT00940000163618 #16	ENSGT00940000156731 #17	ENSGT00390000001029 #19	ENSGT00940000159246 #20	ENSGT00940000160233 #21	ENSGT00390000003248.a.a.a.b.db #22	ENSGT00940000158011 #23	ENSGT00390000018056.f #24	ENSGT00390000011782 #25
Mus_B	ANCESTRAL SPECIES	22	ENSGT00940000159497 #8	ENSGT00940000155059 #9	ENSGT00940000154502 #10	ENSGT00940000153141.B.a #11	ENSGT00520000055567.a.a.b #12	ENSGT00950000183056.B.b #13	ENSGT00940000160216 #14	ENSGT00940000154383.s.a	ENSGT00950000183149.A #15	ENSGT00940000163618 #16	ENSGT00940000156731 #17	ENSGT00390000001029 #19	ENSGT00940000159246 #20	ENSGT00940000160233 #21	ENSGT00390000003248.a.a.a.b.cb.a.a ##22	ENSGT00390000003248.a.a.a.b.db #22	ENSGT00940000158011 #23	ENSGT00390000018056.f #24	ENSGT00390000011782 #25
Mouse	MODERN SPECIES	13	Car8 (ENSMUSG00000041261) #7	Tox (ENSMUSG00000041272) #8	Nsmaf (ENSMUSG00000028245) #9	Sdcbp (ENSMUSG00000028249) #10	Cyp7a1 (ENSMUSG00000028240) #11	Ubxn2b (ENSMUSG00000028243) #12	Fam110b (ENSMUSG00000049119) #13	Bpnt2 (ENSMUSG00000066324) #14	Penk (ENSMUSG00000045573) #15	Sdr16c6 (ENSMUSG00000071019) #16	Sdr16c5 (ENSMUSG00000028236) #17	Gm11808 (ENSMUSG00000068240) #18	Chchd7 (ENSMUSG00000042198) #19	Plag1 (ENSMUSG00000003282) #20	Mos (ENSMUSG00000078365) #21	Rps20 (ENSMUSG00000028234) #22	Lyn (ENSMUSG00000042228) #23	Tgs1 (ENSMUSG00000028233) #24	Tmem68 (ENSMUSG00000028232) #25	Vmn1r3 (ENSMUSG00000115466) #26	Vmn1r2 (ENSMUSG00000115072) #27
Mus_C	ANCESTRAL SPECIES																	ENSGT00390000003248.a.a.a.b.db #22
Steppe mouse	MODERN SPECIES	3284													ENSMSIG00000003831	Naaladl2 (ENSMSIG00000003840)	ENSMSIG00000003888	ENSMSIG00000003917 #22	Tbl1xr1 (ENSMSIG00000003957)
Ryukyu mouse	MODERN SPECIES	13	Rab2a (MGP_CAROLIEiJ_G0025796)	Car8 (MGP_CAROLIEiJ_G0025795) #7	Tox (MGP_CAROLIEiJ_G0025794) #8	Nsmaf (MGP_CAROLIEiJ_G0025793) #9	Sdcbp (MGP_CAROLIEiJ_G0025792) #10	Cyp7a1 (MGP_CAROLIEiJ_G0025791) #11	Ubxn2b (MGP_CAROLIEiJ_G0025790) #12	Fam110b (MGP_CAROLIEiJ_G0025789) #13	Bpnt2 (MGP_CAROLIEiJ_G0025788) #14	Penk (MGP_CAROLIEiJ_G0025787) #15	Sdr16c6 (MGP_CAROLIEiJ_G0025786) #16	Sdr16c5 (MGP_CAROLIEiJ_G0025785) #17	Chchd7 (MGP_CAROLIEiJ_G0025784) #19	Plag1 (MGP_CAROLIEiJ_G0025783) #20	Mos (MGP_CAROLIEiJ_G0025782) #21	Rps20 (MGP_CAROLIEiJ_G0025781) #22	MGP_CAROLIEiJ_G0025780 #24	MGP_CAROLIEiJ_G0025779 #24	Tmem68 (MGP_CAROLIEiJ_G0025778) #25
Shrew mouse	MODERN SPECIES	14	Rab2a (MGP_PahariEiJ_G0023919)	Car8 (MGP_PahariEiJ_G0023918) #7	Tox (MGP_PahariEiJ_G0023917) #8	Nsmaf (MGP_PahariEiJ_G0023916) #9	Sdcbp (MGP_PahariEiJ_G0023915) #10	Cyp7a1 (MGP_PahariEiJ_G0023914) #11	Ubxn2b (MGP_PahariEiJ_G0023913) #12	Fam110b (MGP_PahariEiJ_G0023912) #13	Bpnt2 (MGP_PahariEiJ_G0023911) #14	Penk (MGP_PahariEiJ_G0023910) #15	Sdr16c6 (MGP_PahariEiJ_G0023909) #16	Sdr16c5 (MGP_PahariEiJ_G0023908) #17	Chchd7 (MGP_PahariEiJ_G0023907) #19	Plag1 (MGP_PahariEiJ_G0023906) #20	Mos (MGP_PahariEiJ_G0023905) #21	Rps20 (MGP_PahariEiJ_G0023904) #22	Lyn (MGP_PahariEiJ_G0023903) #23	MGP_PahariEiJ_G0023902 #24	MGP_PahariEiJ_G0023901 #24	MGP_PahariEiJ_G0023900	Xkr4 (MGP_PahariEiJ_G0023899)	Rp1 (MGP_PahariEiJ_G0023898)	Sox17 (MGP_PahariEiJ_G0023897)	Mrpl15 (MGP_PahariEiJ_G0023896)	Lypla1 (MGP_PahariEiJ_G0023895)	MGP_PahariEiJ_G0023894	Tcea1 (MGP_PahariEiJ_G0023893)	Rgs20 (MGP_PahariEiJ_G0023892)	Atp6v1h (MGP_PahariEiJ_G0023891)	Oprk1 (MGP_PahariEiJ_G0023890)	Npbwr1 (MGP_PahariEiJ_G0023889)
Rat	DUPLICATION
Rat	MODERN SPECIES	15	Tmem82 (ENSRNOG00000011970)	Plekhm2 (ENSRNOG00000012163)	Ddi2 (ENSRNOG00000012274)	Agmat (ENSRNOG00000012315)	Dnajc16 (ENSRNOG00000012503)	Casp9 (ENSRNOG00000012944)	Cela2a (ENSRNOG00000013628)	Ctrc (ENSRNOG00000013745)	Efhd2 (ENSRNOG00000013783)	Fhad1 (ENSRNOG00000028064)	Tmem51 (ENSRNOG00000014197)	ENSRNOG00000070661	Kazn (ENSRNOG00000014322)	6330411D24Rik (ENSRNOG00000065736)	Prdm2 (ENSRNOG00000033522)	LOC100359951 (ENSRNOG00000071148) #22	ENSRNOG00000070725	Pdpn (ENSRNOG00000014961)	Lrrc38 (ENSRNOG00000015264)	Pramef27 (ENSRNOG00000027328)	Pramef8 (ENSRNOG00000027278)	Oog3 (ENSRNOG00000033000)	Pramef5 (ENSRNOG00000067307)	ENSRNOG00000065869	Oog1 (ENSRNOG00000027142)	LOC120103107 (ENSRNOG00000047341)	RGD1306186 (ENSRNOG00000037039)	Pramef17 (ENSRNOG00000042820)	Pramef25 (ENSRNOG00000027000)	Pramef20 (ENSRNOG00000053942)	Pramef12 (ENSRNOG00000037035)
Rat	MODERN SPECIES	10	Tat (ENSRNOG00000016348)	Marveld3 (ENSRNOG00000016291)	Phlpp2 (ENSRNOG00000016108)	Ap1g1 (ENSRNOG00000069458)	Atxn1l (ENSRNOG00000038766)	Zfp821 (ENSRNOG00000000262)	Ist1 (ENSRNOG00000015144)	Pkd1l3 (ENSRNOG00000052310)	Dhodh (ENSRNOG00000015063)	Hp (ENSRNOG00000014964)	ENSRNOG00000063716	Txnl4b (ENSRNOG00000021379)	Dhx38 (ENSRNOG00000014619)	Pmfbp1 (ENSRNOG00000014505)	Zfhx3 (ENSRNOG00000014452)	LOC679899 (ENSRNOG00000069342) #22	Psmd7 (ENSRNOG00000014097)	Wwp2 (ENSRNOG00000012937)	Nob1 (ENSRNOG00000021890)	Nqo1 (ENSRNOG00000012772)	Nfat5 (ENSRNOG00000011879)	Cyb5b (ENSRNOG00000011142)	Terf2 (ENSRNOG00000020435)	Tmed6 (ENSRNOG00000020406)	Nip7 (ENSRNOG00000020391)	Cog8 (ENSRNOG00000020379)	Pdf (ENSRNOG00000022303)	Vps4a (ENSRNOG00000020351)	Sntb2 (ENSRNOG00000020344)	Utp4 (ENSRNOG00000020333)	Chtf8 (ENSRNOG00000047246)