Euarchontoglires_A ANCESTRAL SPECIES 19 ENSGT00940000153886.a.b.f ENSGT00940000158863 ENSGT00940000159497 ENSGT00940000155059 #7 ENSGT00940000154502 #8 ENSGT00940000153141.B.a #9 ENSGT00520000055567.a.a.b #10 ENSGT00950000183056.B.b #12 ENSGT00940000160216 #14 ENSGT00950000183149.A #15 ENSGT00940000163618 #16 ENSGT00940000156731 #17 ENSGT00390000001029 #19 ENSGT00940000159246 #20 ENSGT00940000160233 ENSGT00390000003248.a.a.a.b #22 ENSGT00940000158011 #23 ENSGT00390000018056 #24 ENSGT00390000011782 #25 ENSGT01070000253766.A.b #26 ENSGT00940000164647 ENSGT00940000154242.b #27 ENSGT00940000156694 #28 ENSGT00390000009040 #29 ENSGT00940000154185 #30 ENSGT00940000155121 #31 ENSGT00940000159123 #32 ENSGT00390000003289 #33 ENSGT00940000157341 #34 ENSGT00940000161936 #35 ENSGT00390000015871 #36 Glires ANCESTRAL SPECIES 20 ENSGT00940000153886.a.b.f ENSGT00940000158863 ENSGT00940000159497 ENSGT00940000155059 #7 ENSGT00940000154502 #8 ENSGT00940000153141.B.a #9 ENSGT00520000055567.a.a.b #10 ENSGT00950000183056.B.b #12 ENSGT00940000160216 #14 ENSGT00950000183149.A #15 ENSGT00940000163618 #16 ENSGT00940000156731 #17 ENSGT00390000001029 #19 ENSGT00940000159246 #20 ENSGT00940000160233 ENSGT00390000003248.a.a.a.b #22 ENSGT00940000158011 #23 ENSGT00390000018056 #24 ENSGT00390000011782 #25 ENSGT01070000253766.A.b #26 ENSGT00940000164647 ENSGT00940000154242.b #27 ENSGT00940000156694 #28 ENSGT00390000009040 #29 ENSGT00940000154185 #30 ENSGT00940000155121 #31 ENSGT00940000159123 #32 ENSGT00390000003289 #33 ENSGT00940000157341 #34 ENSGT00940000161936 #35 ENSGT00390000015871 #36 Rodentia DUPLICATION Rodentia ANCESTRAL SPECIES 19 ENSGT00940000153886.a.b.f ENSGT00940000158863 ENSGT00940000159497 ENSGT00940000155059 #7 ENSGT00940000154502 #8 ENSGT00940000153141.B.a #9 ENSGT00520000055567.a.a.b #10 ENSGT00950000183056.B.b #12 ENSGT00940000160216 #14 ENSGT00950000183149.A #15 ENSGT00940000163618 #16 ENSGT00940000156731 #17 ENSGT00390000001029 #19 ENSGT00940000159246 #20 ENSGT00940000160233 ENSGT00390000003248.a.a.a.b.db #22 ENSGT00940000158011 #23 ENSGT00390000018056 #24 ENSGT00390000011782 #25 ENSGT01070000253766.A.b #26 ENSGT00940000164647 ENSGT00940000154242.b #27 ENSGT00940000156694 #28 ENSGT00390000009040 #29 ENSGT00940000154185 #30 ENSGT00940000155121 #31 ENSGT00940000159123 #32 ENSGT00390000003289 #33 ENSGT00940000157341 #34 ENSGT00940000161936 #35 ENSGT00390000015871 #36 Rodentia_B ANCESTRAL SPECIES 17 ENSGT00940000153886.a.b.f ENSGT00940000158863 ENSGT00940000159497 ENSGT00940000155059 #7 ENSGT00940000154502 #8 ENSGT00940000153141.B.a #9 ENSGT00520000055567.a.a.b #10 ENSGT00950000183056.B.b #12 ENSGT00940000160216 #14 ENSGT00950000183149.A #15 ENSGT00940000163618 #16 ENSGT00940000156731 #17 ENSGT00390000001029 #19 ENSGT00940000159246 #20 ENSGT00940000160233 ENSGT00390000003248.a.a.a.b.db #22 ENSGT00940000158011 #23 ENSGT00390000018056 #24 ENSGT00390000011782 #25 ENSGT01070000253766.A.b #26 ENSGT00940000164647 ENSGT00940000154242.b #27 ENSGT00940000156694 #28 ENSGT00390000009040 #29 ENSGT00940000154185 #30 ENSGT00940000155121 #31 ENSGT00940000159123 #32 ENSGT00390000003289 #33 ENSGT00940000157341 #34 ENSGT00940000161936 #35 ENSGT00390000015871 #36 Kangaroo rat MODERN SPECIES 328 Nsmaf (ENSDORG00000006742) #7 Sdcbp (ENSDORG00000006741) #8 Cyp7a1 (ENSDORG00000004649) #9 Ubxn2b (ENSDORG00000005860) #10 ENSDORG00000026451 #11 Fam110b (ENSDORG00000015721) #12 ENSDORG00000025951 #13 Bpnt2 (ENSDORG00000015489) #14 Penk (ENSDORG00000011721) #15 Sdr16c6 (ENSDORG00000026488) #16 Sdr16c5 (ENSDORG00000004594) #17 ENSDORG00000025931 #18 Chchd7 (ENSDORG00000004592) #19 Plag1 (ENSDORG00000011524) #20 ENSDORG00000029409 #21 Rps20 (ENSDORG00000005794) #22 Lyn (ENSDORG00000000747) #23 Tgs1 (ENSDORG00000012484) #24 ENSDORG00000012483 #25 Xkr4 (ENSDORG00000005763) #26 Rp1 (ENSDORG00000009139) #27 Sox17 (ENSDORG00000027735) #28 Mrpl15 (ENSDORG00000012200) #29 Lypla1 (ENSDORG00000001479) #30 Tcea1 (ENSDORG00000015058) #31 ENSDORG00000006333 #32 Atp6v1h (ENSDORG00000007689) #33 Oprk1 (ENSDORG00000009506) #34 Npbwr1 (ENSDORG00000013949) #35 ENSDORG00000005679 #36 ENSDORG00000029422 #37 Myomorpha ANCESTRAL SPECIES 18 ENSGT00940000153886.a.b.f ENSGT00940000158863 ENSGT00940000159497 ENSGT00940000155059 #7 ENSGT00940000154502 #8 ENSGT00940000153141.B.a #9 ENSGT00520000055567.a.a.b #10 ENSGT00950000183056.B.b #12 ENSGT00940000160216 #14 ENSGT00950000183149.A #15 ENSGT00940000163618 #16 ENSGT00940000156731 #17 ENSGT00390000001029 #19 ENSGT00940000159246 #20 ENSGT00940000160233 ENSGT00390000003248.a.a.a.b.db #22 ENSGT00940000158011 #23 ENSGT00390000018056 #24 ENSGT00390000011782 #25 ENSGT01070000253766.A.b #26 ENSGT00940000164647 ENSGT00940000154242.b #27 ENSGT00940000156694 #28 ENSGT00390000009040 #29 ENSGT00940000154185 #30 ENSGT00940000155121 #31 ENSGT00940000159123 #32 ENSGT00390000003289 #33 ENSGT00940000157341 #34 ENSGT00940000161936 #35 ENSGT00390000015871 #36 Lesser Egyptian jerboa MODERN SPECIES 144 Hipk1 (ENSJJAG00000023146) Olfml3 (ENSJJAG00000021371) Syt6 (ENSJJAG00000020309) Trim33 (ENSJJAG00000012942) ENSJJAG00000007313 Dennd2c (ENSJJAG00000009709) Ampd1 (ENSJJAG00000021675) ENSJJAG00000020941 Csde1 (ENSJJAG00000019571) ENSJJAG00000019089 Nr1h5 (ENSJJAG00000018578) ENSJJAG00000018067 Tshb (ENSJJAG00000001329) Tspan2 (ENSJJAG00000000832) Ngf (ENSJJAG00000022901) ENSJJAG00000021722 #22 Vangl1 (ENSJJAG00000021462) Casq2 (ENSJJAG00000020862) Nhlh2 (ENSJJAG00000019983) Slc22a15 (ENSJJAG00000000255) Mab21l3 (ENSJJAG00000022482) Atp1a1 (ENSJJAG00000020791) Igsf3 (ENSJJAG00000017489) Cd2 (ENSJJAG00000019842) Ptgfrn (ENSJJAG00000019616) Ttf2 (ENSJJAG00000015225) Trim45 (ENSJJAG00000007227) Vtcn1 (ENSJJAG00000019207) ENSJJAG00000018170 Man1a2 (ENSJJAG00000017865) Tent5c (ENSJJAG00000013174) Muroidea ANCESTRAL SPECIES 14 ENSGT00940000153886.a.b.f ENSGT00940000158863 ENSGT00940000159497 ENSGT00940000155059 #7 ENSGT00940000154502 #8 ENSGT00940000153141.B.a #9 ENSGT00520000055567.a.a.b #10 ENSGT00950000183056.B.b #12 ENSGT00940000160216 #14 ENSGT00950000183149.A #15 ENSGT00940000163618 #16 ENSGT00940000156731 #17 ENSGT00390000001029 #19 ENSGT00940000159246 #20 ENSGT00940000160233 ENSGT00390000003248.a.a.a.b.db #22 ENSGT00940000158011 #23 ENSGT00390000018056 #24 ENSGT00390000011782 #25 ENSGT01070000253766.A.b #26 ENSGT00940000164647 ENSGT00940000154242.b #27 ENSGT00940000156694 #28 ENSGT00390000009040 #29 ENSGT00940000154185 #30 ENSGT00940000155121 #31 ENSGT00940000159123 #32 ENSGT00390000003289 #33 ENSGT00940000157341 #34 ENSGT00940000161936 #35 ENSGT00390000015871 #36 Muroidea_A ANCESTRAL SPECIES 3 ENSGT00940000158863 ENSGT00940000159497 ENSGT00940000155059 #7 ENSGT00940000154502 #8 ENSGT00940000153141.B.a #9 ENSGT00520000055567.a.a.b #10 ENSGT00950000183056.B.b #12 ENSGT00940000160216 #14 ENSGT00940000154383.s.a ENSGT00950000183149.A #15 ENSGT00940000163618 #16 ENSGT00940000156731 #17 ENSGT00390000001029 #19 ENSGT00940000159246 #20 ENSGT00940000160233 ENSGT00390000003248.a.a.a.b.db #22 ENSGT00940000158011 #23 ENSGT00390000018056 #24 ENSGT00390000011782 #25 ENSGT01070000253766.A.b #26 ENSGT00940000164647 ENSGT00940000154242.b #27 ENSGT00940000156694 #28 ENSGT00390000009040 #29 ENSGT00940000154185 #30 ENSGT00940000155121 #31 ENSGT00940000159123 #32 ENSGT00390000003289 #33 ENSGT00940000157341 #34 ENSGT00940000161936 #35 ENSGT00390000015871 #36 Murinae ANCESTRAL SPECIES 2 ENSGT00940000158863 ENSGT00940000159497 ENSGT00940000155059 #7 ENSGT00940000154502 #8 ENSGT00940000153141.B.a #9 ENSGT00520000055567.a.a.b #10 ENSGT00950000183056.B.b #12 ENSGT00940000160216 #14 ENSGT00940000154383.s.a ENSGT00950000183149.A #15 ENSGT00940000163618 #16 ENSGT00940000156731 #17 ENSGT00390000001029 #19 ENSGT00940000159246 #20 ENSGT00940000160233 ENSGT00390000003248.a.a.a.b.db #22 ENSGT00940000158011 #23 ENSGT00390000018056 #24 ENSGT00390000011782 #25 ENSGT01070000253766.A.b #26 ENSGT00940000154242.b #27 ENSGT00940000156694 #28 ENSGT00390000009040 #29 ENSGT00940000154185 #30 ENSGT00940000155121 #31 ENSGT00940000159123 #32 ENSGT00390000003289 #33 ENSGT00940000157341 #34 ENSGT00940000161936 #35 ENSGT00390000015871 #36 ENSGT00940000159969.a Rat DUPLICATION Rat MODERN SPECIES 15 Tmem82 (ENSRNOG00000011970) Plekhm2 (ENSRNOG00000012163) Ddi2 (ENSRNOG00000012274) Agmat (ENSRNOG00000012315) Dnajc16 (ENSRNOG00000012503) Casp9 (ENSRNOG00000012944) Cela2a (ENSRNOG00000013628) Ctrc (ENSRNOG00000013745) Efhd2 (ENSRNOG00000013783) Fhad1 (ENSRNOG00000028064) Tmem51 (ENSRNOG00000014197) ENSRNOG00000070661 Kazn (ENSRNOG00000014322) 6330411D24Rik (ENSRNOG00000065736) Prdm2 (ENSRNOG00000033522) LOC100359951 (ENSRNOG00000071148) #22 ENSRNOG00000070725 Pdpn (ENSRNOG00000014961) Lrrc38 (ENSRNOG00000015264) Pramef27 (ENSRNOG00000027328) Pramef8 (ENSRNOG00000027278) Oog3 (ENSRNOG00000033000) Pramef5 (ENSRNOG00000067307) ENSRNOG00000065869 Oog1 (ENSRNOG00000027142) LOC120103107 (ENSRNOG00000047341) RGD1306186 (ENSRNOG00000037039) Pramef17 (ENSRNOG00000042820) Pramef25 (ENSRNOG00000027000) Pramef20 (ENSRNOG00000053942) Pramef12 (ENSRNOG00000037035) Rat MODERN SPECIES 10 Tat (ENSRNOG00000016348) Marveld3 (ENSRNOG00000016291) Phlpp2 (ENSRNOG00000016108) Ap1g1 (ENSRNOG00000069458) Atxn1l (ENSRNOG00000038766) Zfp821 (ENSRNOG00000000262) Ist1 (ENSRNOG00000015144) Pkd1l3 (ENSRNOG00000052310) Dhodh (ENSRNOG00000015063) Hp (ENSRNOG00000014964) ENSRNOG00000063716 Txnl4b (ENSRNOG00000021379) Dhx38 (ENSRNOG00000014619) Pmfbp1 (ENSRNOG00000014505) Zfhx3 (ENSRNOG00000014452) LOC679899 (ENSRNOG00000069342) #22 Psmd7 (ENSRNOG00000014097) Wwp2 (ENSRNOG00000012937) Nob1 (ENSRNOG00000021890) Nqo1 (ENSRNOG00000012772) Nfat5 (ENSRNOG00000011879) Cyb5b (ENSRNOG00000011142) Terf2 (ENSRNOG00000020435) Tmed6 (ENSRNOG00000020406) Nip7 (ENSRNOG00000020391) Cog8 (ENSRNOG00000020379) Pdf (ENSRNOG00000022303) Vps4a (ENSRNOG00000020351) Sntb2 (ENSRNOG00000020344) Utp4 (ENSRNOG00000020333) Chtf8 (ENSRNOG00000047246) Mus ANCESTRAL SPECIES 3 ENSGT00940000158863 ENSGT00940000159497 ENSGT00940000155059 #7 ENSGT00940000154502 #8 ENSGT00940000153141.B.a #9 ENSGT00520000055567.a.a.b #10 ENSGT00950000183056.B.b #12 ENSGT00940000160216 #14 ENSGT00940000154383.s.a ENSGT00950000183149.A #15 ENSGT00940000163618 #16 ENSGT00940000156731 #17 ENSGT00390000001029 #19 ENSGT00940000159246 #20 ENSGT00940000160233 ENSGT00390000003248.a.a.a.b.db #22 ENSGT00940000158011 #23 ENSGT00390000018056 #24 ENSGT01100000265193 ENSGT01070000253766.A.b #26 ENSGT00940000154242.b #27 ENSGT00940000156694 #28 ENSGT00390000009040 #29 ENSGT00940000154185 #30 ENSGT00940000155121 #31 ENSGT00940000159123 #32 ENSGT00390000003289 #33 ENSGT00940000157341 #34 ENSGT00940000161936 #35 ENSGT00390000015871 #36 ENSGT00940000159969.a Shrew mouse MODERN SPECIES 14 Rab2a (MGP_PahariEiJ_G0023919) Car8 (MGP_PahariEiJ_G0023918) Tox (MGP_PahariEiJ_G0023917) Nsmaf (MGP_PahariEiJ_G0023916) #7 Sdcbp (MGP_PahariEiJ_G0023915) #8 Cyp7a1 (MGP_PahariEiJ_G0023914) #9 Ubxn2b (MGP_PahariEiJ_G0023913) #10 Fam110b (MGP_PahariEiJ_G0023912) #12 Bpnt2 (MGP_PahariEiJ_G0023911) #14 Penk (MGP_PahariEiJ_G0023910) #15 Sdr16c6 (MGP_PahariEiJ_G0023909) #16 Sdr16c5 (MGP_PahariEiJ_G0023908) #17 Chchd7 (MGP_PahariEiJ_G0023907) #19 Plag1 (MGP_PahariEiJ_G0023906) #20 Mos (MGP_PahariEiJ_G0023905) Rps20 (MGP_PahariEiJ_G0023904) #22 Lyn (MGP_PahariEiJ_G0023903) #23 MGP_PahariEiJ_G0023902 #24 MGP_PahariEiJ_G0023901 #24 MGP_PahariEiJ_G0023900 Xkr4 (MGP_PahariEiJ_G0023899) #26 Rp1 (MGP_PahariEiJ_G0023898) #27 Sox17 (MGP_PahariEiJ_G0023897) #28 Mrpl15 (MGP_PahariEiJ_G0023896) #29 Lypla1 (MGP_PahariEiJ_G0023895) #30 MGP_PahariEiJ_G0023894 Tcea1 (MGP_PahariEiJ_G0023893) #31 Rgs20 (MGP_PahariEiJ_G0023892) #32 Atp6v1h (MGP_PahariEiJ_G0023891) #33 Oprk1 (MGP_PahariEiJ_G0023890) #34 Npbwr1 (MGP_PahariEiJ_G0023889) #35 Mus_A ANCESTRAL SPECIES 3 ENSGT00940000158863 ENSGT00940000159497 ENSGT00940000155059 #7 ENSGT00940000154502 #8 ENSGT00940000153141.B.a #9 ENSGT00520000055567.a.a.b #10 ENSGT00950000183056.B.b #12 ENSGT00940000160216 #14 ENSGT00940000154383.s.a ENSGT00950000183149.A #15 ENSGT00940000163618 #16 ENSGT00940000156731 #17 ENSGT00390000001029 #19 ENSGT00940000159246 #20 ENSGT00940000160233 ENSGT00390000003248.a.a.a.b.db #22 ENSGT00940000158011 #23 ENSGT00390000018056.f #24 ENSGT00390000011782 #25 Ryukyu mouse MODERN SPECIES 13 Rab2a (MGP_CAROLIEiJ_G0025796) Car8 (MGP_CAROLIEiJ_G0025795) Tox (MGP_CAROLIEiJ_G0025794) Nsmaf (MGP_CAROLIEiJ_G0025793) #7 Sdcbp (MGP_CAROLIEiJ_G0025792) #8 Cyp7a1 (MGP_CAROLIEiJ_G0025791) #9 Ubxn2b (MGP_CAROLIEiJ_G0025790) #10 Fam110b (MGP_CAROLIEiJ_G0025789) #12 Bpnt2 (MGP_CAROLIEiJ_G0025788) #14 Penk (MGP_CAROLIEiJ_G0025787) #15 Sdr16c6 (MGP_CAROLIEiJ_G0025786) #16 Sdr16c5 (MGP_CAROLIEiJ_G0025785) #17 Chchd7 (MGP_CAROLIEiJ_G0025784) #19 Plag1 (MGP_CAROLIEiJ_G0025783) #20 Mos (MGP_CAROLIEiJ_G0025782) Rps20 (MGP_CAROLIEiJ_G0025781) #22 MGP_CAROLIEiJ_G0025780 #24 MGP_CAROLIEiJ_G0025779 #24 Tmem68 (MGP_CAROLIEiJ_G0025778) #25 Mus_B ANCESTRAL SPECIES 22 ENSGT00940000159497 ENSGT00940000155059 #7 ENSGT00940000154502 #8 ENSGT00940000153141.B.a #9 ENSGT00520000055567.a.a.b #10 ENSGT00950000183056.B.b #12 ENSGT00940000160216 #14 ENSGT00940000154383.s.a ENSGT00950000183149.A #15 ENSGT00940000163618 #16 ENSGT00940000156731 #17 ENSGT00390000001029 #19 ENSGT00940000159246 #20 ENSGT00940000160233 ENSGT00390000003248.a.a.a.b.cb.a.a ##22 ENSGT00390000003248.a.a.a.b.db #22 ENSGT00940000158011 #23 ENSGT00390000018056.f #24 ENSGT00390000011782 #25 Mus_C ANCESTRAL SPECIES ENSGT00390000003248.a.a.a.b.db #22 Steppe mouse MODERN SPECIES 3284 ENSMSIG00000003831 Naaladl2 (ENSMSIG00000003840) ENSMSIG00000003888 ENSMSIG00000003917 #22 Tbl1xr1 (ENSMSIG00000003957) Mouse MODERN SPECIES 13 Car8 (ENSMUSG00000041261) Tox (ENSMUSG00000041272) Nsmaf (ENSMUSG00000028245) #7 Sdcbp (ENSMUSG00000028249) #8 Cyp7a1 (ENSMUSG00000028240) #9 Ubxn2b (ENSMUSG00000028243) #10 Fam110b (ENSMUSG00000049119) #12 Bpnt2 (ENSMUSG00000066324) #14 Penk (ENSMUSG00000045573) #15 Sdr16c6 (ENSMUSG00000071019) #16 Sdr16c5 (ENSMUSG00000028236) #17 Gm11808 (ENSMUSG00000068240) Chchd7 (ENSMUSG00000042198) #19 Plag1 (ENSMUSG00000003282) #20 Mos (ENSMUSG00000078365) Rps20 (ENSMUSG00000028234) #22 Lyn (ENSMUSG00000042228) #23 Tgs1 (ENSMUSG00000028233) #24 Tmem68 (ENSMUSG00000028232) #25 Vmn1r3 (ENSMUSG00000115466) Vmn1r2 (ENSMUSG00000115072) Cricetidae DUPLICATION Cricetidae DUPLICATION Cricetidae ANCESTRAL SPECIES ENSGT00390000003248.a.a.a.b.db.c.a #22 Cricetidae_B ANCESTRAL SPECIES ENSGT00390000003248.a.a.a.b.db.c.a #22 Prairie vole DUPLICATION Prairie vole MODERN SPECIES 2 Cyp11b2 (ENSMOCG00000001733) Cyp11b1 (ENSMOCG00000020170) ENSMOCG00000015409 ENSMOCG00000008187 Nell2 (ENSMOCG00000002600) Ano6 (ENSMOCG00000018323) ENSMOCG00000016077 ENSMOCG00000019972 Scaf11 (ENSMOCG00000000678) Slc38a1 (ENSMOCG00000006739) Slc38a2 (ENSMOCG00000003601) Slc38a4 (ENSMOCG00000015247) Amigo2 (ENSMOCG00000013021) Pced1b (ENSMOCG00000005496) Rpap3 (ENSMOCG00000021033) ENSMOCG00000005623 #22 Endou (ENSMOCG00000015012) Rapgef3 (ENSMOCG00000002335) Slc48a1 (ENSMOCG00000013448) Hdac7 (ENSMOCG00000019731) ENSMOCG00000013472 Tmem106c (ENSMOCG00000016714) Col2a1 (ENSMOCG00000014833) ENSMOCG00000002706 ENSMOCG00000015383 Pfkm (ENSMOCG00000021333) Asb8 (ENSMOCG00000017776) Ccdc184 (ENSMOCG00000003788) ENSMOCG00000001175 ENSMOCG00000001245 Zfp641 (ENSMOCG00000019174) Prairie vole MODERN SPECIES 9 Tyr (ENSMOCG00000014094) ENSMOCG00000019618 Grm5 (ENSMOCG00000007786) Ctsc (ENSMOCG00000014577) Rab38 (ENSMOCG00000017329) Tmem135 (ENSMOCG00000018801) Fzd4 (ENSMOCG00000003180) ENSMOCG00000004372 Hddc3 (ENSMOCG00000010323) ENSMOCG00000017504 ENSMOCG00000012208 Fes (ENSMOCG00000015972) Furin (ENSMOCG00000010449) Blm (ENSMOCG00000016367) Crtc3 (ENSMOCG00000013330) ENSMOCG00000018309 #22 Iqgap1 (ENSMOCG00000008969) Zscan2 (ENSMOCG00000014314) Wdr73 (ENSMOCG00000015177) Nmb (ENSMOCG00000017100) Sec11a (ENSMOCG00000005585) Zfp592 (ENSMOCG00000019221) Alpk3 (ENSMOCG00000021545) Slc28a1 (ENSMOCG00000008190) Pde8a (ENSMOCG00000005246) Rps17 (ENSMOCG00000018582) Cpeb1 (ENSMOCG00000006902) Ap3b2 (ENSMOCG00000007121) BC048679 (ENSMOCG00000000682) ENSMOCG00000009343 Fsd2 (ENSMOCG00000015179) Cricetidae ANCESTRAL SPECIES ENSGT00390000003248.a.a.a.b.db.c.b #22 Cricetidae_B ANCESTRAL SPECIES ENSGT00390000003248.a.a.a.b.db.c.b #22 Prairie vole MODERN SPECIES 355 ENSMOCG00000005603 Tmem67 (ENSMOCG00000011860) Pdp1 (ENSMOCG00000014340) Cdh17 (ENSMOCG00000010844) Gem (ENSMOCG00000006722) Fsbp (ENSMOCG00000008704) Rad54b (ENSMOCG00000020035) Virma (ENSMOCG00000015388) Esrp1 (ENSMOCG00000013567) Dpy19l4 (ENSMOCG00000007197) Ints8 (ENSMOCG00000017112) Ccne2 (ENSMOCG00000001638) Trp53inp1 (ENSMOCG00000021132) Ndufaf6 (ENSMOCG00000015272) Plekhf2 (ENSMOCG00000002768) ENSMOCG00000002359 #22 Cfap418 (ENSMOCG00000019280) ENSMOCG00000000256 Gdf6 (ENSMOCG00000021011) Asph (ENSMOCG00000013819) Clvs1 (ENSMOCG00000013201) ENSMOCG00000010657 Chd7 (ENSMOCG00000011408) Rab2a (ENSMOCG00000014140) Car8 (ENSMOCG00000018985) Tox (ENSMOCG00000013368) Nsmaf (ENSMOCG00000018628) #7 ENSMOCG00000014994 #8 Cyp7a1 (ENSMOCG00000004265) #9 Ubxn2b (ENSMOCG00000009288) #10 Fam110b (ENSMOCG00000010757) #12 Cricetinae ANCESTRAL SPECIES ENSGT00390000003248.a.a.a.b.db.c.b #22 Chinese hamster chok1gshd MODERN SPECIES 54 ENSCGRG00001013970 ENSCGRG00001004842 Nxph1 (ENSCGRG00001017708) Ica1 (ENSCGRG00001013759) Glcci1 (ENSCGRG00001020867) Umad1 (ENSCGRG00001019337) Rpa3 (ENSCGRG00001004183) Mios (ENSCGRG00001022654) Col28a1 (ENSCGRG00001018669) ENSCGRG00001016873 ASNS (ENSCGRG00001015428) Tac1 (ENSCGRG00001020738) Sdhaf3 (ENSCGRG00001012553) Dlx5 (ENSCGRG00001001362) Dlx6 (ENSCGRG00001015244) ENSCGRG00001016396 #22 Sem1 (ENSCGRG00001000539) ENSCGRG00001023047 Slc25a13 (ENSCGRG00001024718) ENSCGRG00001003096 ENSCGRG00001022786 Pdk4 (ENSCGRG00001014183) Asb4 (ENSCGRG00001002568) Pon2 (ENSCGRG00001017926) Pon3 (ENSCGRG00001017513) Pon1 (ENSCGRG00001017580) ENSCGRG00001022001 ENSCGRG00001012942 ENSCGRG00001010002 Sgce (ENSCGRG00001021015) Casd1 (ENSCGRG00001001133) Cricetidae ANCESTRAL SPECIES 2 ENSGT00940000158863 ENSGT00940000159497 ENSGT00940000155059 #7 ENSGT00940000154502 #8 ENSGT00940000153141.B.a #9 ENSGT00520000055567.a.a.b #10 ENSGT00950000183056.B.b #12 ENSGT00940000160216 #14 ENSGT00940000154383.s.a ENSGT00950000183149.A #15 ENSGT00940000163618 #16 ENSGT00940000156731 #17 ENSGT00390000001029 #19 ENSGT00940000159246 #20 ENSGT00940000160233 ENSGT00390000003248.a.a.a.b.db.d #22 ENSGT00940000158011 #23 ENSGT00390000018056 #24 ENSGT00390000011782 #25 ENSGT01070000253766.A.b #26 ENSGT00940000164647 ENSGT00940000154242.b #27 ENSGT00940000156694 #28 ENSGT00390000009040 #29 ENSGT00940000154185 #30 ENSGT00940000155121 #31 ENSGT00940000159123 #32 ENSGT00390000003289 #33 ENSGT00940000157341 #34 ENSGT00940000161936 #35 ENSGT00390000015871 #36 Cricetinae ANCESTRAL SPECIES 31 ENSGT00940000153886.a.b.f ENSGT00940000158863 ENSGT00940000159497 ENSGT00940000155059 #7 ENSGT00940000154502 #8 ENSGT00940000153141.B.a #9 ENSGT00520000055567.a.a.b #10 ENSGT00950000183056.B.b #12 ENSGT00940000160216 #14 ENSGT00950000183149.A #15 ENSGT00940000163618 #16 ENSGT00940000156731 #17 ENSGT00390000001029 #19 ENSGT00940000159246 #20 ENSGT00940000160233 ENSGT00390000003248.a.a.a.b.db.d #22 ENSGT00940000158011 #23 ENSGT00390000018056 #24 ENSGT00390000011782 #25 ENSGT01070000253766.A.b #26 ENSGT00940000164647 ENSGT00940000154242.b #27 ENSGT00940000156694 #28 ENSGT00390000009040 #29 ENSGT00940000154185 #30 ENSGT00940000155121 #31 ENSGT00940000159123 #32 ENSGT00390000003289 #33 ENSGT00940000157341 #34 ENSGT00940000161936 #35 ENSGT00390000015871 #36 Chinese hamster chok1gshd MODERN SPECIES 136 Car8 (ENSCGRG00001016884) ENSCGRG00001015202 Tox (ENSCGRG00001012296) Nsmaf (ENSCGRG00001000418) #7 Sdcbp (ENSCGRG00001024052) #8 Cyp7a1 (ENSCGRG00001023767) #9 Ubxn2b (ENSCGRG00001022571) #10 Fam110b (ENSCGRG00001016576) #12 Bpnt2 (ENSCGRG00001020859) #14 Penk (ENSCGRG00001017327) #15 Sdr16c6 (ENSCGRG00001015002) #16 Sdr16c5 (ENSCGRG00001012918) #17 Chchd7 (ENSCGRG00001011586) #19 Plag1 (ENSCGRG00001007120) #20 Mos (ENSCGRG00001001977) ENSCGRG00001010356 #22 Lyn (ENSCGRG00001023003) #23 Tgs1 (ENSCGRG00001019470) #24 Tmem68 (ENSCGRG00001014894) #25 ENSCGRG00001014282 ENSCGRG00001013815 #26 ENSCGRG00001010786 #27 Sox17 (ENSCGRG00001009950) #28 ENSCGRG00001020498 #29 ENSCGRG00001016962 #30 ENSCGRG00001000991 #31 Rgs20 (ENSCGRG00001023847) #32 Atp6v1h (ENSCGRG00001018456) #33 Oprk1 (ENSCGRG00001014321) #34 ENSCGRG00001013124 Npbwr1 (ENSCGRG00001001773) #35 Cricetidae_B ANCESTRAL SPECIES 50 ENSGT00940000159497 ENSGT00940000155059 #7 ENSGT00940000154502 #8 ENSGT00940000153141.B.a #9 ENSGT00520000055567.a.a.b #10 ENSGT00950000183056.B.b #12 ENSGT00940000160216 #14 ENSGT00940000154383.s.a ENSGT00950000183149.A #15 ENSGT00940000163618 #16 ENSGT00940000156731 #17 ENSGT00390000001029 #19 ENSGT00940000159246 #20 ENSGT00940000160233 ENSGT00390000003248.a.a.a.b.cb.a.a ##22 ENSGT00390000003248.a.a.a.b.db.d #22 ENSGT00940000158011 #23 ENSGT00390000018056 #24 ENSGT00390000011782 #25 ENSGT01070000253766.A.b #26 ENSGT00940000154242.b #27 ENSGT00940000156694 #28 ENSGT00390000009040 #29 ENSGT00940000154185 #30 ENSGT00940000155121 #31 ENSGT00940000159123 #32 ENSGT00390000003289 #33 ENSGT00940000157341 #34 ENSGT00940000161936 #35 ENSGT00390000015871 #36 ENSGT00940000159969.a Prairie vole DUPLICATION Prairie vole MODERN SPECIES 12 Zfp821 (ENSMOCG00000021660) Ist1 (ENSMOCG00000001146) Pkd1l3 (ENSMOCG00000021954) ENSMOCG00000017444 ENSMOCG00000011833 Hp (ENSMOCG00000022096) Txnl4b (ENSMOCG00000013902) Dhx38 (ENSMOCG00000016798) Pmfbp1 (ENSMOCG00000008708) Zfhx3 (ENSMOCG00000017998) Psmd7 (ENSMOCG00000018363) Wwp2 (ENSMOCG00000019211) Nob1 (ENSMOCG00000010370) ENSMOCG00000009352 Cntnap4 (ENSMOCG00000005286) ENSMOCG00000010395 #22 Mon1b (ENSMOCG00000003753) Syce1l (ENSMOCG00000022883) Adamts18 (ENSMOCG00000015505) ENSMOCG00000010114 Nudt7 (ENSMOCG00000015530) Vat1l (ENSMOCG00000018479) Clec3a (ENSMOCG00000016149) Wwox (ENSMOCG00000013122) Maf (ENSMOCG00000017607) Dynlrb2 (ENSMOCG00000016123) Cdyl2 (ENSMOCG00000021578) ENSMOCG00000007353 Cenpn (ENSMOCG00000011952) Atmin (ENSMOCG00000020741) 1700030J22Rik (ENSMOCG00000021044) Prairie vole MODERN SPECIES 20 ENSMOCG00000000517 #22 Prairie vole MODERN SPECIES 355 Rab2a (ENSMOCG00000014140) Car8 (ENSMOCG00000018985) Tox (ENSMOCG00000013368) Nsmaf (ENSMOCG00000018628) #7 ENSMOCG00000014994 #8 Cyp7a1 (ENSMOCG00000004265) #9 Ubxn2b (ENSMOCG00000009288) #10 Fam110b (ENSMOCG00000010757) #12 Bpnt2 (ENSMOCG00000015732) #14 ENSMOCG00000003270 Penk (ENSMOCG00000005168) #15 Sdr16c6 (ENSMOCG00000012126) #16 Sdr16c5 (ENSMOCG00000002710) #17 Chchd7 (ENSMOCG00000015783) #19 Plag1 (ENSMOCG00000015674) #20 ENSMOCG00000019980 #22 Lyn (ENSMOCG00000018677) #23 Tgs1 (ENSMOCG00000019560) #24 Tmem68 (ENSMOCG00000004085) #25 ENSMOCG00000017472 Xkr4 (ENSMOCG00000014076) #26 ENSMOCG00000003814 #27 ENSMOCG00000019449 #28 ENSMOCG00000021042 #28 Mrpl15 (ENSMOCG00000015777) #29 ENSMOCG00000018466 Lypla1 (ENSMOCG00000016895) #30 Tcea1 (ENSMOCG00000018663) #31 Rgs20 (ENSMOCG00000021946) #32 Atp6v1h (ENSMOCG00000013542) #33 Oprk1 (ENSMOCG00000021359) #34 Upper Galilee mountains blind mole rat DUPLICATION Upper Galilee mountains blind mole rat MODERN SPECIES 1100 ENSNGAG00000012102 ENSNGAG00000013595 #22 Upper Galilee mountains blind mole rat MODERN SPECIES 826 ENSNGAG00000017707 Bpnt2 (ENSNGAG00000019142) #14 Penk (ENSNGAG00000011902) #15 Sdr16c6 (ENSNGAG00000012717) #16 Sdr16c5 (ENSNGAG00000013369) #17 Chchd7 (ENSNGAG00000013871) #19 Plag1 (ENSNGAG00000014522) #20 Mos (ENSNGAG00000015058) ENSNGAG00000015253 #22 Lyn (ENSNGAG00000016075) #23 Tgs1 (ENSNGAG00000019532) #24 ENSNGAG00000020846 #25 Upper Galilee mountains blind mole rat MODERN SPECIES 1279 ENSNGAG00000021481 Hmg20a (ENSNGAG00000021385) Lingo1 (ENSNGAG00000021247) Odf3l1 (ENSNGAG00000020969) ENSNGAG00000020737 #22 Cspg4 (ENSNGAG00000019508) Snx33 (ENSNGAG00000019047) Imp3 (ENSNGAG00000017248) Snupn (ENSNGAG00000018735) Ptpn9 (ENSNGAG00000018454) Sin3a (ENSNGAG00000015781) Man2c1 (ENSNGAG00000015162) Neil1 (ENSNGAG00000012812) Commd4 (ENSNGAG00000007593) Rodentia_A ANCESTRAL SPECIES ENSGT00390000003248.a.a.a.b.db #22 Hystricomorpha ANCESTRAL SPECIES ENSGT00390000003248.a.a.a.b.db #22 Hystricomorpha_a ANCESTRAL SPECIES ENSGT00390000003248.a.a.a.b.db #22 Hystricomorpha_b ANCESTRAL SPECIES ENSGT00390000003248.a.a.a.b.db #22 Degu DUPLICATION Degu MODERN SPECIES 43 TGM7 (ENSODEG00000016365) ADAL (ENSODEG00000016433) ZSCAN29 (ENSODEG00000016691) TUBGCP4 (ENSODEG00000016217) TP53BP1 (ENSODEG00000016364) MAP1A (ENSODEG00000016751) PPIP5K1 (ENSODEG00000016403) ENSODEG00000016390 PDIA3 (ENSODEG00000016212) ENSODEG00000016295 HYPK (ENSODEG00000016700) MFAP1 (ENSODEG00000016397) ENSODEG00000016060 FRMD5 (ENSODEG00000016269) ENSODEG00000020502 ENSODEG00000016724 #22 GOLM2 (ENSODEG00000016663) ENSODEG00000016525 CTDSPL2 (ENSODEG00000016569) ENSODEG00000016386 SPG11 (ENSODEG00000016165) ENSODEG00000016509 ENSODEG00000015913 CEMIP (ENSODEG00000016192) ENSODEG00000016748 TLNRD1 (ENSODEG00000020545) CFAP161 (ENSODEG00000015893) ENSODEG00000016584 ENSODEG00000016326 STARD5 (ENSODEG00000015843) TMC3 (ENSODEG00000015805) Degu MODERN SPECIES 43 ENSODEG00000020443 CHP1 (ENSODEG00000016900) RTF1 (ENSODEG00000016921) ITPKA (ENSODEG00000016760) ENSODEG00000017041 ENSODEG00000020489 ENSODEG00000020390 MGA (ENSODEG00000017016) ENSODEG00000016967 JMJD7 (ENSODEG00000016738) EHD4 (ENSODEG00000016665) PLA2G4F (ENSODEG00000016568) VPS39 (ENSODEG00000016980) TMEM87A (ENSODEG00000016556) GANC (ENSODEG00000016815) ENSODEG00000017288 #22 CAPN3 (ENSODEG00000017103) ENSODEG00000016557 ENSODEG00000020344 ENSODEG00000016643 ENSODEG00000016623 ENSODEG00000016919 ENSODEG00000016844 CDAN1 (ENSODEG00000016883) ENSODEG00000016839 UBR1 (ENSODEG00000016879) TMEM62 (ENSODEG00000016864) ENSODEG00000017025 TGM5 (ENSODEG00000016333) TGM7 (ENSODEG00000016365) ADAL (ENSODEG00000016433) Guinea pig MODERN SPECIES 25 RCC1 (ENSCPOG00000010069) PHACTR4 (ENSCPOG00000003219) MED18 (ENSCPOG00000038084) SESN2 (ENSCPOG00000000236) ATP5IF1 (ENSCPOG00000030836) DNAJC8 (ENSCPOG00000014652) PTAFR (ENSCPOG00000031748) EYA3 (ENSCPOG00000012512) ENSCPOG00000033302 ##26 SMPDL3B (ENSCPOG00000008773) RPA2 (ENSCPOG00000008766) THEMIS2 (ENSCPOG00000033796) PPP1R8 (ENSCPOG00000036078) STX12 (ENSCPOG00000013160) FAM76A (ENSCPOG00000006186) ENSCPOG00000031828 #22 FGR (ENSCPOG00000015092) AHDC1 (ENSCPOG00000022607) WASF2 (ENSCPOG00000012376) GPR3 (ENSCPOG00000027123) CD164L2 (ENSCPOG00000022092) MAP3K6 (ENSCPOG00000012359) SYTL1 (ENSCPOG00000012354) TMEM222 (ENSCPOG00000020198) WDTC1 (ENSCPOG00000012347) SLC9A1 (ENSCPOG00000035897) TENT5B (ENSCPOG00000032542) KDF1 (ENSCPOG00000022999) NUDC (ENSCPOG00000010413) NR0B2 (ENSCPOG00000010409) GPATCH3 (ENSCPOG00000010404) Sciuridae ANCESTRAL SPECIES 17 ENSGT00940000153886.a.b.f ENSGT00940000158863 ENSGT00940000159497 ENSGT00940000155059 #7 ENSGT00940000154502 #8 ENSGT00940000153141.B.a #9 ENSGT00520000055567.a.a.b #10 ENSGT00950000183056.B.b #12 ENSGT00940000160216 #14 ENSGT00950000183149.A #15 ENSGT00940000163618 #16 ENSGT00940000156731 #17 ENSGT00390000001029 #19 ENSGT00940000159246 #20 ENSGT00940000160233 ENSGT00390000003248.a.a.a.b.db #22 ENSGT00390000003248.a.a.a.b.cb.a.a ##22 ENSGT00940000158011 #23 ENSGT00390000018056 #24 ENSGT00390000011782 #25 ENSGT01070000253766.A.b #26 ENSGT00940000154242.b #27 ENSGT00940000156694 #28 ENSGT00390000009040 #29 ENSGT00940000154185 #30 ENSGT00940000155121 #31 ENSGT00940000159123 #32 ENSGT00390000003289 #33 ENSGT00940000157341 #34 ENSGT00940000161936 #35 ENSGT00390000015871 #36 Marmotini ANCESTRAL SPECIES 10 ENSGT00940000157108 ENSGT00940000159307 ENSGT00940000155894 ENSGT00390000005870 ENSGT00940000157544 ENSGT00940000153141.B.a #9 ENSGT00520000055567.a.a.b #10 ENSGT00950000183056.B.b #12 ENSGT00940000160216 #14 ENSGT00950000183149.A #15 ENSGT00940000163618 #16 ENSGT00940000156731 #17 ENSGT00390000001029 #19 ENSGT00940000159246 #20 ENSGT00940000160233 ENSGT00390000003248.a.a.a.b.db #22 ENSGT00940000158011 #23 ENSGT00390000018056 #24 ENSGT00390000011782 #25 ENSGT01070000253766.A.b #26 ENSGT00940000154242.b #27 ENSGT00940000156694 #28 ENSGT00390000009040 #29 ENSGT00940000154185 #30 ENSGT00940000155121 #31 ENSGT00940000159123 #32 ENSGT00390000003289 #33 ENSGT00940000157341 #34 ENSGT00940000161936 #35 ENSGT00390000015871 #36 ENSGT00940000159969.a Alpin marmot MODERN SPECIES 16 ARFGEF1 (ENSMMMG00000001982) CPA6 (ENSMMMG00000001953) PREX2 (ENSMMMG00000001880) C8orf34 (ENSMMMG00000001709) ENSMMMG00000001538 CYP7A1 (ENSMMMG00000001515) #9 UBXN2B (ENSMMMG00000001510) #10 FAM110B (ENSMMMG00000001495) #12 ENSMMMG00000001477 #14 PENK (ENSMMMG00000001467) #15 ENSMMMG00000001408 #16 SDR16C5 (ENSMMMG00000001394) #17 CHCHD7 (ENSMMMG00000001389) #19 PLAG1 (ENSMMMG00000001377) #20 MOS (ENSMMMG00000001371) RPS20 (ENSMMMG00000001350) #22 LYN (ENSMMMG00000001265) #23 TGS1 (ENSMMMG00000001130) #24 TMEM68 (ENSMMMG00000001093) #25 RP1 (ENSMMMG00000001046) #27 ENSMMMG00000001041 SOX17 (ENSMMMG00000001029) #28 ENSMMMG00000001024 MRPL15 (ENSMMMG00000001003) #29 LYPLA1 (ENSMMMG00000000994) #30 TCEA1 (ENSMMMG00000000970) #31 ATP6V1H (ENSMMMG00000000819) #33 OPRK1 (ENSMMMG00000000792) #34 ENSMMMG00000000769 ENSMMMG00000000761 NPBWR1 (ENSMMMG00000000755) #35 Rodentia DUPLICATION Rodentia DUPLICATION Rodentia ANCESTRAL SPECIES ENSGT00390000003248.a.a.a.b.cb.a.a ##22 Rodentia_B ANCESTRAL SPECIES ENSGT00390000003248.a.a.a.b.cb.a.a ##22 Myomorpha ANCESTRAL SPECIES ENSGT00390000003248.a.a.a.b.cb.a.a ##22 Muroidea ANCESTRAL SPECIES ENSGT00390000003248.a.a.a.b.cb.a.a ##22 Muroidea_A ANCESTRAL SPECIES ENSGT00390000003248.a.a.a.b.cb.a.a ##22 Murinae ANCESTRAL SPECIES ENSGT00390000003248.a.a.a.b.cb.a.a ##22 Mus ANCESTRAL SPECIES ENSGT00390000003248.a.a.a.b.cb.a.a ##22 Mus_A ANCESTRAL SPECIES ENSGT00390000003248.a.a.a.b.cb.a.a ##22 Mus_B ANCESTRAL SPECIES 22 ENSGT00940000158863 ENSGT00940000159497 ENSGT00940000155059 #7 ENSGT00940000154502 #8 ENSGT00940000153141.B.a #9 ENSGT00520000055567.a.a.b #10 ENSGT00950000183056.B.b #12 ENSGT00940000160216 #14 ENSGT00940000154383.s.a ENSGT00950000183149.A #15 ENSGT00940000163618 #16 ENSGT00940000156731 #17 ENSGT00390000001029 #19 ENSGT00940000159246 #20 ENSGT00940000160233 ENSGT00390000003248.a.a.a.b.cb.a.a ##22 ENSGT00390000003248.a.a.a.b.db #22 ENSGT00940000158011 #23 ENSGT00390000018056.f #24 ENSGT00390000011782 #25 Mus_C ANCESTRAL SPECIES 2 ENSGT00940000158863 ENSGT00940000159497 ENSGT00940000155059 #7 ENSGT00940000154502 #8 ENSGT00940000153141.B.a #9 ENSGT00520000055567.a.a.b #10 ENSGT00950000183056.B.b #12 ENSGT00940000160216 #14 ENSGT00940000154383.s.a ENSGT00950000183149.A #15 ENSGT00940000163618 #16 ENSGT00940000156731 #17 ENSGT00390000001029 #19 ENSGT00940000159246 #20 ENSGT00940000160233 ENSGT00390000003248.a.a.a.b.cb.a.a ##22 ENSGT00940000158011 #23 ENSGT00390000018056.f #24 ENSGT00390000011782 #25 Steppe mouse MODERN SPECIES 3083 ENSMSIG00000023749 Cyp7a1 (ENSMSIG00000023757) #9 Ubxn2b (ENSMSIG00000023768) #10 ENSMSIG00000023784 Fam110b (ENSMSIG00000023787) #12 ENSMSIG00000023798 ENSMSIG00000023802 Bpnt2 (ENSMSIG00000023807) #14 ENSMSIG00000023818 Penk (ENSMSIG00000023830) #15 Sdr16c6 (ENSMSIG00000023838) #16 Sdr16c5 (ENSMSIG00000023861) #17 Chchd7 (ENSMSIG00000023876) #19 Plag1 (ENSMSIG00000023923) #20 Mos (ENSMSIG00000023932) ENSMSIG00000023940 ##22 spretus MODERN SPECIES 13 Rab2a (MGP_SPRETEiJ_G0026744) Car8 (MGP_SPRETEiJ_G0026743) Tox (MGP_SPRETEiJ_G0026742) Nsmaf (MGP_SPRETEiJ_G0026741) #7 Sdcbp (MGP_SPRETEiJ_G0026740) #8 Cyp7a1 (MGP_SPRETEiJ_G0026739) #9 Ubxn2b (MGP_SPRETEiJ_G0026738) #10 Fam110b (MGP_SPRETEiJ_G0026737) #12 MGP_SPRETEiJ_G0026736 #14 Penk (MGP_SPRETEiJ_G0026735) #15 Sdr16c6 (MGP_SPRETEiJ_G0026734) #16 Sdr16c5 (MGP_SPRETEiJ_G0026733) #17 Chchd7 (MGP_SPRETEiJ_G0026732) #19 Plag1 (MGP_SPRETEiJ_G0026731) #20 Mos (MGP_SPRETEiJ_G0026730) Rps20 (MGP_SPRETEiJ_G0026729) ##22 Lyn (MGP_SPRETEiJ_G0026728) #23 Tgs1 (MGP_SPRETEiJ_G0026727) #24 MGP_SPRETEiJ_G0026726 #24 MGP_SPRETEiJ_G0026725 Rat MODERN SPECIES 19 RGD1559960 (ENSRNOG00000068175) ENSRNOG00000069656 Sult1c2a (ENSRNOG00000042111) LOC102551938 (ENSRNOG00000067413) LOC120093086 (ENSRNOG00000065530) LOC301165 (ENSRNOG00000046714) Sgo1 (ENSRNOG00000022499) Kat2b (ENSRNOG00000011871) Pp2d1 (ENSRNOG00000004719) Rab5a (ENSRNOG00000057056) LOC103690615 (ENSRNOG00000000124) Efhb (ENSRNOG00000012618) LOC689479 (ENSRNOG00000046576) Kcnh8 (ENSRNOG00000058626) Satb1 (ENSRNOG00000012942) Rps20-ps11 (ENSRNOG00000030345) ##22 Tbc1d5 (ENSRNOG00000010637) Plcl2 (ENSRNOG00000013368) ENSRNOG00000064269 LOC120094619 (ENSRNOG00000063528) AABR07066416.2 (ENSRNOG00000046104) ENSRNOG00000070668 LOC120093071 (ENSRNOG00000049503) ENSRNOG00000070131 LOC120094615 (ENSRNOG00000068213) LOC120094611 (ENSRNOG00000066837) LOC108351878 (ENSRNOG00000062425) LOC100360856 (ENSRNOG00000047581) LOC120094612 (ENSRNOG00000064783) LOC120094606 (ENSRNOG00000067046) ENSRNOG00000066561 Cricetidae ANCESTRAL SPECIES ENSGT00390000003248.a.a.a.b.cb.a.a ##22 Cricetidae_B ANCESTRAL SPECIES 50 ENSGT00940000158863 ENSGT00940000159497 ENSGT00940000155059 #7 ENSGT00940000154502 #8 ENSGT00940000153141.B.a #9 ENSGT00520000055567.a.a.b #10 ENSGT00950000183056.B.b #12 ENSGT00940000160216 #14 ENSGT00940000154383.s.a ENSGT00950000183149.A #15 ENSGT00940000163618 #16 ENSGT00940000156731 #17 ENSGT00390000001029 #19 ENSGT00940000159246 #20 ENSGT00940000160233 ENSGT00390000003248.a.a.a.b.cb.a.a ##22 ENSGT00390000003248.a.a.a.b.db.d #22 ENSGT00940000158011 #23 ENSGT00390000018056 #24 ENSGT00390000011782 #25 ENSGT01070000253766.A.b #26 ENSGT00940000154242.b #27 ENSGT00940000156694 #28 ENSGT00390000009040 #29 ENSGT00940000154185 #30 ENSGT00940000155121 #31 ENSGT00940000159123 #32 ENSGT00390000003289 #33 ENSGT00940000157341 #34 ENSGT00940000161936 #35 ENSGT00390000015871 #36 Northern American deer mouse MODERN SPECIES 11 Car8 (ENSPEMG00000019908) Tox (ENSPEMG00000019966) Nsmaf (ENSPEMG00000019696) #7 Sdcbp (ENSPEMG00000020043) #8 Cyp7a1 (ENSPEMG00000019921) #9 Ubxn2b (ENSPEMG00000028233) #10 Fam110b (ENSPEMG00000028969) #12 Bpnt2 (ENSPEMG00000000461) #14 ENSPEMG00000015262 Penk (ENSPEMG00000016794) #15 Sdr16c6 (ENSPEMG00000023129) #16 Sdr16c5 (ENSPEMG00000021917) #17 ENSPEMG00000023256 Plag1 (ENSPEMG00000027390) #20 Mos (ENSPEMG00000008516) ENSPEMG00000029829 ##22 Lyn (ENSPEMG00000021545) #23 ENSPEMG00000029859 Tgs1 (ENSPEMG00000007957) #24 Tmem68 (ENSPEMG00000021534) #25 ENSPEMG00000030336 #30 Xkr4 (ENSPEMG00000021985) #26 Rp1 (ENSPEMG00000013397) #27 ENSPEMG00000014386 ENSPEMG00000026817 Sox17 (ENSPEMG00000030488) #28 Mrpl15 (ENSPEMG00000000583) #29 ENSPEMG00000027695 ENSPEMG00000014138 #30 Tcea1 (ENSPEMG00000023948) #31 Rgs20 (ENSPEMG00000009893) #32 Rodentia_A ANCESTRAL SPECIES 18 ENSGT00940000153886.a.b.f ENSGT00940000158863 ENSGT00940000159497 ENSGT00940000155059 #7 ENSGT00940000154502 #8 ENSGT00940000153141.B.a #9 ENSGT00520000055567.a.a.b #10 ENSGT00950000183056.B.b #12 ENSGT00940000160216 #14 ENSGT00950000183149.A #15 ENSGT00940000163618 #16 ENSGT00940000156731 #17 ENSGT00390000001029 #19 ENSGT00940000159246 #20 ENSGT00940000160233 ENSGT00390000003248.a.a.a.b.cb.a.a ##22 ENSGT00940000158011 #23 ENSGT00390000018056 #24 ENSGT00390000011782 #25 ENSGT01070000253766.A.b #26 ENSGT00940000154242.b #27 ENSGT00940000156694 #28 ENSGT00390000009040 #29 ENSGT00940000154185 #30 ENSGT00940000155121 #31 ENSGT00940000159123 #32 ENSGT00390000003289 #33 ENSGT00940000157341 #34 ENSGT00940000161936 #35 ENSGT00390000015871 #36 ENSGT00940000159969.a Sciuridae ANCESTRAL SPECIES 17 ENSGT00940000158863 ENSGT00940000159497 ENSGT00940000155059 #7 ENSGT00940000154502 #8 ENSGT00940000153141.B.a #9 ENSGT00520000055567.a.a.b #10 ENSGT00950000183056.B.b #12 ENSGT00940000160216 #14 ENSGT00950000183149.A #15 ENSGT00940000163618 #16 ENSGT00940000156731 #17 ENSGT00390000001029 #19 ENSGT00940000159246 #20 ENSGT00940000160233 ENSGT00390000003248.a.a.a.b.db #22 ENSGT00390000003248.a.a.a.b.cb.a.a ##22 ENSGT00940000158011 #23 ENSGT00390000018056 #24 ENSGT00390000011782 #25 ENSGT01070000253766.A.b #26 ENSGT00940000154242.b #27 ENSGT00940000156694 #28 ENSGT00390000009040 #29 ENSGT00940000154185 #30 ENSGT00940000155121 #31 ENSGT00940000159123 #32 ENSGT00390000003289 #33 ENSGT00940000157341 #34 ENSGT00940000161936 #35 ENSGT00390000015871 #36 ENSGT00940000159969.a Eurasian red squirrel MODERN SPECIES CA8 (ENSSVLG00005012006) TOX (ENSSVLG00005011958) NSMAF (ENSSVLG00005011910) #7 SDCBP (ENSSVLG00005011445) #8 CYP7A1 (ENSSVLG00005011337) #9 UBXN2B (ENSSVLG00005011261) #10 FAM110B (ENSSVLG00005011236) #12 BPNT2 (ENSSVLG00005011167) #14 PENK (ENSSVLG00005011127) #15 ENSSVLG00005010971 #16 SDR16C5 (ENSSVLG00005010895) #17 ENSSVLG00005010860 CHCHD7 (ENSSVLG00005010790) #19 PLAG1 (ENSSVLG00005010731) #20 MOS (ENSSVLG00005010710) RPS20 (ENSSVLG00005010588) ##22 LYN (ENSSVLG00005010475) #23 TGS1 (ENSSVLG00005010446) #24 ENSSVLG00005010412 ENSSVLG00005010285 #25 XKR4 (ENSSVLG00005010234) #26 RP1 (ENSSVLG00005009858) #27 SOX17 (ENSSVLG00005009789) #28 MRPL15 (ENSSVLG00005009764) #29 ENSSVLG00005009666 #30 ENSSVLG00005009646 TCEA1 (ENSSVLG00005009501) #31 RGS20 (ENSSVLG00005009394) #32 ENSSVLG00005009360 ATP6V1H (ENSSVLG00005009299) #33 ENSSVLG00005009270 Marmotini ANCESTRAL SPECIES ENSGT00390000003248.a.a.a.b.cb.a.a ##22 Marmotini_b ANCESTRAL SPECIES 52 ENSGT00940000157108 ENSGT00940000159307 ENSGT00940000155894 ENSGT00390000005870 ENSGT00940000157544 ENSGT00940000153141.B.a #9 ENSGT00520000055567.a.a.b #10 ENSGT00950000183056.B.b #12 ENSGT00940000160216 #14 ENSGT00950000183149.A #15 ENSGT00940000163618 #16 ENSGT00940000156731 #17 ENSGT00390000001029 #19 ENSGT00940000159246 #20 ENSGT00940000160233 ENSGT00390000003248.a.a.a.b.cb.a.a ##22 ENSGT00940000158011 #23 ENSGT00390000018056 #24 ENSGT00390000011782 #25 ENSGT01070000253766.A.b #26 ENSGT00940000154242.b #27 ENSGT00940000156694 #28 ENSGT00390000009040 #29 ENSGT00940000154185 #30 ENSGT00940000155121 #31 ENSGT00940000159123 #32 ENSGT00390000003289 #33 ENSGT00940000157341 #34 ENSGT00940000161936 #35 ENSGT00390000015871 #36 ENSGT00940000159969.a Arctic ground squirrel MODERN SPECIES 137 RPS20 (ENSUPAG00010002625) ##22 LYN (ENSUPAG00010002635) #23 TMEM68 (ENSUPAG00010002929) #25 XKR4 (ENSUPAG00010002936) #26 RP1 (ENSUPAG00010002942) #27 ENSUPAG00010002961 SOX17 (ENSUPAG00010002964) #28 MRPL15 (ENSUPAG00010002973) #29 LYPLA1 (ENSUPAG00010002986) #30 TCEA1 (ENSUPAG00010003008) #31 ENSUPAG00010003023 RGS20 (ENSUPAG00010003027) #32 ATP6V1H (ENSUPAG00010003037) #33 OPRK1 (ENSUPAG00010003107) #34 ENSUPAG00010003124 NPBWR1 (ENSUPAG00010003128) #35 Hystricomorpha ANCESTRAL SPECIES 12 ENSGT00940000153886.a.b.f ENSGT00940000158863 ENSGT00940000159497 ENSGT00940000155059 #7 ENSGT00940000154502 #8 ENSGT00940000153141.B.a #9 ENSGT00520000055567.a.a.b #10 ENSGT00950000183056.B.b #12 ENSGT00940000160216 #14 ENSGT00950000183149.A #15 ENSGT00940000163618 #16 ENSGT00940000156731 #17 ENSGT00390000001029 #19 ENSGT00940000159246 #20 ENSGT00940000160233 ENSGT00390000003248.a.a.a.b.cb.a.a ##22 ENSGT00390000003248.a.b.b ##22 ENSGT00390000003248.a.a.a.b.cb.b.b ##22 ENSGT00940000158011 #23 ENSGT00390000018056 #24 ENSGT00390000011782 #25 ENSGT01070000253766.A.b #26 ENSGT00940000154242.b #27 ENSGT00940000156694 #28 ENSGT00390000009040 #29 ENSGT00940000154185.cb #30 ENSGT00940000155121 #31 ENSGT00940000159123 #32 ENSGT00390000003289 #33 ENSGT00940000157341 #34 ENSGT00940000161936 #35 Hystricomorpha_a ANCESTRAL SPECIES 9 ENSGT00940000153886.a.b.f ENSGT00940000158863 ENSGT00940000159497 ENSGT00940000155059 #7 ENSGT00940000154502 #8 ENSGT00940000153141.B.a #9 ENSGT00520000055567.a.a.b #10 ENSGT00950000183056.B.b #12 ENSGT00940000160216 #14 ENSGT00950000183149.A #15 ENSGT00940000163618 #16 ENSGT00940000156731 #17 ENSGT00390000001029 #19 ENSGT00940000159246 #20 ENSGT00940000160233 ENSGT00390000003248.a.a.a.b.cb.a.a ##22 ENSGT00390000003248.a.a.a.b.cb.b.b ##22 ENSGT00940000158011 #23 ENSGT00390000018056 #24 ENSGT00390000011782 #25 ENSGT01070000253766.A.b #26 ENSGT00940000154242.b #27 ENSGT00940000156694 #28 ENSGT00390000009040 #29 ENSGT00940000154185.cb #30 ENSGT00940000155121 #31 ENSGT00940000159123 #32 ENSGT00390000003289 #33 ENSGT00940000157341 #34 ENSGT00940000161936 #35 ENSGT00390000015871.v #36 Guinea pig MODERN SPECIES 64 FAM110B (ENSCPOG00000033617) #12 BPNT2 (ENSCPOG00000023705) #14 PENK (ENSCPOG00000031786) #15 ENSCPOG00000020018 #16 SDR16C5 (ENSCPOG00000000571) #17 CHCHD7 (ENSCPOG00000030280) #19 PLAG1 (ENSCPOG00000039131) #20 MOS (ENSCPOG00000020476) ENSCPOG00000011697 ##22 ENSCPOG00000030320 LYN (ENSCPOG00000011693) #23 TGS1 (ENSCPOG00000009713) #24 TMEM68 (ENSCPOG00000019826) #25 XKR4 (ENSCPOG00000003676) #26 ENSCPOG00000039324 #27 SOX17 (ENSCPOG00000000892) #28 MRPL15 (ENSCPOG00000035946) #29 LYPLA1 (ENSCPOG00000022715) #30 TCEA1 (ENSCPOG00000005886) #31 ENSCPOG00000038533 #32 ENSCPOG00000022816 ATP6V1H (ENSCPOG00000012174) #33 ENSCPOG00000023180 OPRK1 (ENSCPOG00000006607) #34 Hystricomorpha_b ANCESTRAL SPECIES ENSGT00390000003248.a.a.a.b.cb.a.a ##22 Degu MODERN SPECIES 126 ENSODEG00000019073 ##22 ENSODEG00000004554 ENSODEG00000005181 HMMR (ENSODEG00000004387) ENSODEG00000004867 ENSODEG00000005448 TENM2 (ENSODEG00000005069) WWC1 (ENSODEG00000004850) RARS1 (ENSODEG00000005980) ENSODEG00000005759 FBLL1 (ENSODEG00000019199) PANK3 (ENSODEG00000005503) SLIT3 (ENSODEG00000005145) ENSODEG00000006240 INSYN2B (ENSODEG00000006097) DOCK2 (ENSODEG00000004282) Rodentia ANCESTRAL SPECIES ENSGT00390000003248.a.a.a.b.cb.a.b ##22 Rodentia_B ANCESTRAL SPECIES ENSGT00390000003248.a.a.a.b.cb.a.b ##22 Myomorpha ANCESTRAL SPECIES ENSGT00390000003248.a.a.a.b.cb.a.b ##22 Muroidea ANCESTRAL SPECIES ENSGT00390000003248.a.a.a.b.cb.a.b ##22 Muroidea_A ANCESTRAL SPECIES ENSGT00390000003248.a.a.a.b.cb.a.b ##22 Murinae ANCESTRAL SPECIES ENSGT00390000003248.a.a.a.b.cb.a.b ##22 Rat DUPLICATION Rat MODERN SPECIES 13 ENSRNOG00000067722 Pdcl (ENSRNOG00000008484) Rc3h2 (ENSRNOG00000009196) Zbtb6 (ENSRNOG00000009340) Zbtb26 (ENSRNOG00000009346) Rabgap1 (ENSRNOG00000009402) Gpr21 (ENSRNOG00000042269) Strbp (ENSRNOG00000010150) RGD1561137 (ENSRNOG00000030143) Crb2 (ENSRNOG00000025498) Dennd1a (ENSRNOG00000010526) Lhx2 (ENSRNOG00000010551) Nek6 (ENSRNOG00000010897) Psmb7 (ENSRNOG00000011732) ENSRNOG00000066446 Rps20 (ENSRNOG00000029627) ##22 Nr5a1 (ENSRNOG00000012682) Nr6a1 (ENSRNOG00000013232) Olfml2a (ENSRNOG00000014034) Wdr38 (ENSRNOG00000014102) Rpl35 (ENSRNOG00000014272) Arpc5l (ENSRNOG00000014317) Golga1 (ENSRNOG00000014493) Scai (ENSRNOG00000025278) Ppp6c (ENSRNOG00000015145) AABR07051831.1 (ENSRNOG00000015854) LOC100362366 (ENSRNOG00000028690) Lrp1b (ENSRNOG00000030243) Kynu (ENSRNOG00000029993) Arhgap15 (ENSRNOG00000031168) Gtdc1 (ENSRNOG00000031038) Rat MODERN SPECIES 15 Cyp7a1 (ENSRNOG00000009488) #9 Ubxn2b (ENSRNOG00000071045) #10 ENSRNOG00000063053 Fam110b (ENSRNOG00000009114) #12 ENSRNOG00000069204 Bpnt2 (ENSRNOG00000046647) #14 RGD1563405 (ENSRNOG00000069142) Penk (ENSRNOG00000008943) #15 Sdr16c6 (ENSRNOG00000067216) #16 Sdr16c6 (ENSRNOG00000040151) #16 Sdr16c5 (ENSRNOG00000008871) #17 Chchd7 (ENSRNOG00000031769) Plag1 (ENSRNOG00000008846) #20 LOC100364265 (ENSRNOG00000012088) Mos (ENSRNOG00000008567) Rps20-ps10 (ENSRNOG00000008555) ##22 Lyn (ENSRNOG00000008180) #23 Tgs1 (ENSRNOG00000008156) #24 Tmem68 (ENSRNOG00000008872) #25 Xkr4 (ENSRNOG00000027276) #26 Cyld-ps1 (ENSRNOG00000008861) Rp1 (ENSRNOG00000008807) #27 ENSRNOG00000065942 Sumo4 (ENSRNOG00000069967) Sox17 (ENSRNOG00000027357) #28 Mrpl15 (ENSRNOG00000008566) #29 Lypla1 (ENSRNOG00000008320) #30 Tcea1 (ENSRNOG00000022323) #31 Rgs20 (ENSRNOG00000008100) #32 Atp6v1h (ENSRNOG00000030862) #33 Oprk1 (ENSRNOG00000007647) #34 Cricetidae ANCESTRAL SPECIES ENSGT00390000003248.a.a.a.b.cb.a.b ##22 Cricetidae_B ANCESTRAL SPECIES ENSGT00390000003248.a.a.a.b.cb.a.b ##22 Northern American deer mouse MODERN SPECIES 10 Tmx3 (ENSPEMG00000011968) ENSPEMG00000030219 Dok6 (ENSPEMG00000019316) Cd226 (ENSPEMG00000029583) Rttn (ENSPEMG00000019864) ENSPEMG00000027089 Socs6 (ENSPEMG00000009086) ENSPEMG00000009228 ##10 ENSPEMG00000004621 ENSPEMG00000028176 Cbln2 (ENSPEMG00000024653) Neto1 (ENSPEMG00000021247) ENSPEMG00000026675 ENSPEMG00000030444 ##22 Fbxo15 (ENSPEMG00000003160) Timm21 (ENSPEMG00000024475) Cyb5a (ENSPEMG00000020270) Gm17266 (ENSPEMG00000031219) Dipk1c (ENSPEMG00000019790) Cndp2 (ENSPEMG00000020038) Cndp1 (ENSPEMG00000017304) Zfp407 (ENSPEMG00000019754) Zadh2 (ENSPEMG00000028418) Tshz1 (ENSPEMG00000022838) Zfp516 (ENSPEMG00000024000) ENSPEMG00000024427 Zfp236 (ENSPEMG00000026320) Mbp (ENSPEMG00000021451) Galr1 (ENSPEMG00000022914) Rodentia DUPLICATION Rodentia ANCESTRAL SPECIES ENSGT00390000003248.a.a.a.b.cb.b.a ##22 Rodentia_B ANCESTRAL SPECIES ENSGT00390000003248.a.a.a.b.cb.b.a ##22 Myomorpha ANCESTRAL SPECIES ENSGT00390000003248.a.a.a.b.cb.b.a ##22 Muroidea ANCESTRAL SPECIES ENSGT00390000003248.a.a.a.b.cb.b.a ##22 Muroidea_A ANCESTRAL SPECIES ENSGT00390000003248.a.a.a.b.cb.b.a ##22 Murinae ANCESTRAL SPECIES ENSGT00390000003248.a.a.a.b.cb.b.a ##22 Rat MODERN SPECIES 15 Reck (ENSRNOG00000014863) Or13c7 (ENSRNOG00000068857) Or13c7c (ENSRNOG00000070597) Or13c7b (ENSRNOG00000063480) Or13c7e (ENSRNOG00000065792) Or13c7d (ENSRNOG00000062897) ENSRNOG00000070391 Hrct1 (ENSRNOG00000039336) Or13j1 (ENSRNOG00000066545) Or13e8 (ENSRNOG00000015652) Tmem8b (ENSRNOG00000015664) Fam221b (ENSRNOG00000025453) Hint2 (ENSRNOG00000015866) Spag8 (ENSRNOG00000032539) Npr2 (ENSRNOG00000015991) RGD1562259 (ENSRNOG00000070923) ##22 Msmp (ENSRNOG00000043023) Rgp1 (ENSRNOG00000016309) Gba2 (ENSRNOG00000016364) Creb3 (ENSRNOG00000016452) Tln1 (ENSRNOG00000016630) Tpm2 (ENSRNOG00000016731) Car9 (ENSRNOG00000017073) Arhgef39 (ENSRNOG00000021433) Ccdc107 (ENSRNOG00000017253) Sit1 (ENSRNOG00000021546) RGD1560723 (ENSRNOG00000063741) Cd72 (ENSRNOG00000017485) Tesk1 (ENSRNOG00000053729) Fam166b (ENSRNOG00000065204) Rusc2 (ENSRNOG00000045843) Rodentia ANCESTRAL SPECIES ENSGT00390000003248.a.a.a.b.cb.b.b ##22 Rodentia_A ANCESTRAL SPECIES ENSGT00390000003248.a.a.a.b.cb.b.b ##22 Hystricomorpha ANCESTRAL SPECIES 12 ENSGT00940000159497 ENSGT00940000155059 #7 ENSGT00940000154502 #8 ENSGT00940000153141.B.a #9 ENSGT00520000055567.a.a.b #10 ENSGT00950000183056.B.b #12 ENSGT00940000160216 #14 ENSGT00950000183149.A #15 ENSGT00940000163618 #16 ENSGT00940000156731 #17 ENSGT00390000001029 #19 ENSGT00940000159246 #20 ENSGT00940000160233 ENSGT00390000003248.a.a.a.b.cb.a.a ##22 ENSGT00390000003248.a.b.b ##22 ENSGT00390000003248.a.a.a.b.cb.b.b ##22 ENSGT00940000158011 #23 ENSGT00390000018056 #24 ENSGT00390000011782 #25 ENSGT01070000253766.A.b #26 ENSGT00940000154242.b #27 ENSGT00940000156694 #28 ENSGT00390000009040 #29 ENSGT00940000154185.cb #30 ENSGT00940000155121 #31 ENSGT00940000159123 #32 ENSGT00390000003289 #33 ENSGT00940000157341 #34 ENSGT00940000161936 #35 ENSGT00390000015871.v #36 ENSGT00940000159969.a Hystricomorpha_a ANCESTRAL SPECIES 9 ENSGT00940000158863 ENSGT00940000159497 ENSGT00940000155059 #7 ENSGT00940000154502 #8 ENSGT00940000153141.B.a #9 ENSGT00520000055567.a.a.b #10 ENSGT00950000183056.B.b #12 ENSGT00940000160216 #14 ENSGT00950000183149.A #15 ENSGT00940000163618 #16 ENSGT00940000156731 #17 ENSGT00390000001029 #19 ENSGT00940000159246 #20 ENSGT00940000160233 ENSGT00390000003248.a.a.a.b.cb.a.a ##22 ENSGT00390000003248.a.a.a.b.cb.b.b ##22 ENSGT00940000158011 #23 ENSGT00390000018056 #24 ENSGT00390000011782 #25 ENSGT01070000253766.A.b #26 ENSGT00940000154242.b #27 ENSGT00940000156694 #28 ENSGT00390000009040 #29 ENSGT00940000154185.cb #30 ENSGT00940000155121 #31 ENSGT00940000159123 #32 ENSGT00390000003289 #33 ENSGT00940000157341 #34 ENSGT00940000161936 #35 ENSGT00390000015871.v #36 ENSGT00940000159969.a Hystricomorpha_b ANCESTRAL SPECIES 27 ENSGT00940000155059 #7 ENSGT00940000154502 #8 ENSGT00940000153141.B.a #9 ENSGT00520000055567.a.a.b #10 ENSGT00940000160216 #14 ENSGT00950000183149.A #15 ENSGT00940000163618 #16 ENSGT00940000156731 #17 ENSGT00390000001029 #19 ENSGT00940000159246 #20 ENSGT00390000003248.a.a.a.b.cb.b.b ##22 ENSGT00940000158011 #23 ENSGT00390000018056 #24 ENSGT00390000011782 #25 ENSGT01070000253766.A.b #26 ENSGT00940000154242.b #27 ENSGT00390000009040 #29 ENSGT00940000154185.bb.a #30 ENSGT00940000155121 #31 ENSGT00940000159123 #32 ENSGT00390000003289 #33 ENSGT00940000157341 #34 ENSGT00940000161936 #35 ENSGT00390000015871.v #36 ENSGT00940000159969.a ENSGT00940000159905 Long-tailed chinchilla MODERN SPECIES 161 NSMAF (ENSCLAG00000013661) #7 SDCBP (ENSCLAG00000013259) #8 CYP7A1 (ENSCLAG00000012771) #9 UBXN2B (ENSCLAG00000011369) #10 ENSCLAG00000010131 #14 PENK (ENSCLAG00000017733) #15 ENSCLAG00000009495 #16 SDR16C5 (ENSCLAG00000012258) #17 CHCHD7 (ENSCLAG00000009729) #19 PLAG1 (ENSCLAG00000013839) #20 RPS20 (ENSCLAG00000015938) ##22 LYN (ENSCLAG00000010085) #23 TGS1 (ENSCLAG00000009468) #24 TMEM68 (ENSCLAG00000009473) #25 XKR4 (ENSCLAG00000010575) #26 ENSCLAG00000011553 #27 MRPL15 (ENSCLAG00000010064) #29 ENSCLAG00000014943 #30 TCEA1 (ENSCLAG00000013516) #31 ENSCLAG00000016009 #32 ATP6V1H (ENSCLAG00000009337) #33 OPRK1 (ENSCLAG00000009850) #34 ENSCLAG00000009340 RB1CC1 (ENSCLAG00000009807) #36 ENSCLAG00000014346 ST18 (ENSCLAG00000011202) Rodentia_B ANCESTRAL SPECIES ENSGT00390000003248.a.a.a.b.cb.b.b ##22 Myomorpha ANCESTRAL SPECIES ENSGT00390000003248.a.a.a.b.cb.b.b ##22 Lesser Egyptian jerboa MODERN SPECIES 51 Chd7 (ENSJJAG00000022064) Rab2a (ENSJJAG00000000676) Car8 (ENSJJAG00000000356) Tox (ENSJJAG00000023957) Nsmaf (ENSJJAG00000018732) #7 Sdcbp (ENSJJAG00000008505) #8 Cyp7a1 (ENSJJAG00000009993) #9 Ubxn2b (ENSJJAG00000017241) #10 Fam110b (ENSJJAG00000011482) #12 Bpnt2 (ENSJJAG00000016357) #14 Penk (ENSJJAG00000012141) #15 Sdr16c6 (ENSJJAG00000005653) #16 Sdr16c5 (ENSJJAG00000012889) #17 Chchd7 (ENSJJAG00000004951) #19 Plag1 (ENSJJAG00000008706) #20 ENSJJAG00000000512 ##22 Lyn (ENSJJAG00000014669) #23 Tgs1 (ENSJJAG00000016239) #24 Tmem68 (ENSJJAG00000009727) #25 ENSJJAG00000003859 Xkr4 (ENSJJAG00000013870) #26 ENSJJAG00000015642 #27 ENSJJAG00000012132 Sox17 (ENSJJAG00000021381) #28 Mrpl15 (ENSJJAG00000016599) #29 ENSJJAG00000019339 #30 Tcea1 (ENSJJAG00000020282) #31 Rgs20 (ENSJJAG00000004359) #32 Atp6v1h (ENSJJAG00000018257) #33 Oprk1 (ENSJJAG00000019887) #34 ENSJJAG00000011904 Muroidea ANCESTRAL SPECIES ENSGT00390000003248.a.a.a.b.cb.b.b ##22 Muroidea_A ANCESTRAL SPECIES ENSGT00390000003248.a.a.a.b.cb.b.b ##22 Cricetidae ANCESTRAL SPECIES ENSGT00390000003248.a.a.a.b.cb.b.b ##22 Cricetidae_B ANCESTRAL SPECIES ENSGT00390000003248.a.a.a.b.cb.b.b ##22 Prairie vole MODERN SPECIES 356 Spata4 (ENSMOCG00000003714) Asb5 (ENSMOCG00000022930) Spcs3 (ENSMOCG00000022872) Vegfc (ENSMOCG00000021548) ENSMOCG00000007262 ENSMOCG00000018728 Aga (ENSMOCG00000014844) Tenm3 (ENSMOCG00000020342) Dctd (ENSMOCG00000015038) ENSMOCG00000005387 ENSMOCG00000003820 Cldn22 (ENSMOCG00000006954) ENSMOCG00000008252 Cdkn2aip (ENSMOCG00000016713) Ing2 (ENSMOCG00000005078) ENSMOCG00000004967 ##22 Rwdd4a (ENSMOCG00000002163) Trappc11 (ENSMOCG00000015798) Stox2 (ENSMOCG00000006233) Enpp6 (ENSMOCG00000021517) Irf2 (ENSMOCG00000013068) Casp3 (ENSMOCG00000011756) Primpol (ENSMOCG00000006815) Cenpu (ENSMOCG00000004846) Acsl1 (ENSMOCG00000008489) Helt (ENSMOCG00000012330) ENSMOCG00000009524 Cfap97 (ENSMOCG00000005943) Snx25 (ENSMOCG00000012866) Lrp2bp (ENSMOCG00000014647) Ankrd37 (ENSMOCG00000011842) Murinae ANCESTRAL SPECIES ENSGT00390000003248.a.a.a.b.cb.b.b ##22 Rat MODERN SPECIES 18 Htr1b (ENSRNOG00000013042) Mei4 (ENSRNOG00000023794) Irak1bp1 (ENSRNOG00000008984) Phip (ENSRNOG00000008652) Hmgn3 (ENSRNOG00000031032) Lca5 (ENSRNOG00000009580) Sh3bgrl2 (ENSRNOG00000009613) Sh3bgrl2 (ENSRNOG00000068670) ENSRNOG00000066197 Elovl4 (ENSRNOG00000009773) Ttk (ENSRNOG00000029055) Bckdhb (ENSRNOG00000009928) RGD1560917 (ENSRNOG00000034128) Tent5a (ENSRNOG00000010240) Ibtk (ENSRNOG00000027728) LOC100359563 (ENSRNOG00000029843) ##22 Tpbg (ENSRNOG00000010694) Ube3d (ENSRNOG00000010802) Dop1a (ENSRNOG00000022847) Pgm3 (ENSRNOG00000009515) Rwdd2a (ENSRNOG00000009599) Me1 (ENSRNOG00000009715) Prss35 (ENSRNOG00000025184) Snap91 (ENSRNOG00000023861) Ripply2 (ENSRNOG00000010004) Cyb5r4 (ENSRNOG00000010024) Mrap2 (ENSRNOG00000010545) Cep162 (ENSRNOG00000010608) Tbx18 (ENSRNOG00000010685) Gabarapl2 (ENSRNOG00000051416) Nt5e (ENSRNOG00000011071) Lagomorpha ANCESTRAL SPECIES 112 ENSGT00950000183149.A #15 ENSGT00940000163618 #16 ENSGT00940000156731 #17 ENSGT00390000001029 #19 ENSGT00940000159246 #20 ENSGT00940000160233 ENSGT00390000003248.a.a.a.b #22 ENSGT00940000158011 #23 ENSGT00390000018056 #24 ENSGT00390000011782 #25 ENSGT01070000253766.A.b #26 ENSGT00940000154242.b #27 ENSGT00940000156694.hb #28 ENSGT00940000156694.gb #28 ENSGT00390000009040 #29 ENSGT00940000154185 #30 ENSGT00940000155121 #31 ENSGT00940000159123 #32 ENSGT00390000003289 #33 ENSGT00940000157341 #34 ENSGT00940000161936 #35 ENSGT00390000015871 #36 Pika MODERN SPECIES 3138 RPS20 (ENSOPRG00000011042) #22 LYN (ENSOPRG00000011016) #23 ENSOPRG00000010995 #24 TMEM68 (ENSOPRG00000010979) #25 Rabbit DUPLICATION Rabbit MODERN SPECIES 10 TUBD1 (ENSOCUG00000013772) VMP1 (ENSOCUG00000004210) PTRH2 (ENSOCUG00000023345) CLTC (ENSOCUG00000016413) DHX40 (ENSOCUG00000038496) ENSOCUG00000031327 ENSOCUG00000035846 YPEL2 (ENSOCUG00000020978) GDPD1 (ENSOCUG00000013113) SMG8 (ENSOCUG00000002350) PRR11 (ENSOCUG00000002337) ENSOCUG00000002334 TRIM37 (ENSOCUG00000002326) PPM1E (ENSOCUG00000026526) ENSOCUG00000002269 ENSOCUG00000025769 #22 TEX14 (ENSOCUG00000009775) ENSOCUG00000009757 MTMR4 (ENSOCUG00000009743) HSF5 (ENSOCUG00000009733) RNF43 (ENSOCUG00000009729) SUPT4H1 (ENSOCUG00000025823) TSPOAP1 (ENSOCUG00000009705) MPO (ENSOCUG00000006526) LPO (ENSOCUG00000009698) MKS1 (ENSOCUG00000010018) EPX (ENSOCUG00000010009) OR4D2 (ENSOCUG00000010006) OR4D1 (ENSOCUG00000011022) DYNLL2 (ENSOCUG00000016563) ENSOCUG00000017678 Rabbit MODERN SPECIES 6 RRH (ENSOCUG00000034648) MCUB (ENSOCUG00000013751) LRIT3 (ENSOCUG00000003908) EGF (ENSOCUG00000016388) ELOVL6 (ENSOCUG00000013069) ENPEP (ENSOCUG00000016264) PITX2 (ENSOCUG00000012685) FAM241A (ENSOCUG00000011383) AP1AR (ENSOCUG00000004413) TIFA (ENSOCUG00000017578) ALPK1 (ENSOCUG00000024991) ENSOCUG00000010848 NEUROG2 (ENSOCUG00000007063) ZGRF1 (ENSOCUG00000007057) LARP7 (ENSOCUG00000007073) ENSOCUG00000021222 #22 ANK2 (ENSOCUG00000010618) ENSOCUG00000035520 CAMK2D (ENSOCUG00000023650) ENSOCUG00000030939 UGT8 (ENSOCUG00000015037) NDST4 (ENSOCUG00000007796) ENSOCUG00000002295 ENSOCUG00000003691 TRAM1L1 (ENSOCUG00000003846) ENSOCUG00000038669 NDST3 (ENSOCUG00000009952) PRSS12 (ENSOCUG00000013625) ENSOCUG00000033772 PABPC4L (ENSOCUG00000028226) ENSOCUG00000038661 Rabbit MODERN SPECIES 14 CYP7A1 (ENSOCUG00000012283) #9 UBXN2B (ENSOCUG00000023461) #10 FAM110B (ENSOCUG00000028224) #12 ENSOCUG00000035749 ENSOCUG00000034339 ENSOCUG00000034482 BPNT2 (ENSOCUG00000004428) #14 ENSOCUG00000033892 ENSOCUG00000012122 ENSOCUG00000007052 #15 ENSOCUG00000023853 #16 SDR16C5 (ENSOCUG00000009657) #17 ENSOCUG00000036164 #19 PLAG1 (ENSOCUG00000006001) #20 MOS (ENSOCUG00000014049) ENSOCUG00000003068 #22 LYN (ENSOCUG00000003056) #23 TGS1 (ENSOCUG00000017522) #24 TMEM68 (ENSOCUG00000017517) #25 ENSOCUG00000027524 XKR4 (ENSOCUG00000017875) #26 RP1 (ENSOCUG00000015022) #27 ENSOCUG00000037040 #28 ENSOCUG00000012651 #28 ENSOCUG00000008012 MRPL15 (ENSOCUG00000001949) #29 LYPLA1 (ENSOCUG00000006751) #30 ENSOCUG00000001051 #32 ATP6V1H (ENSOCUG00000016298) #33 OPRK1 (ENSOCUG00000003120) #34 NPBWR1 (ENSOCUG00000028231) #35 Rabbit DUPLICATION Rabbit MODERN SPECIES ENSOCUG00000030357 ENSOCUG00000038359 ENSOCUG00000030169 ENSOCUG00000037426 ENSOCUG00000031086 INSL6 (ENSOCUG00000013682) ENSOCUG00000037721 JAK2 (ENSOCUG00000016853) RCL1 (ENSOCUG00000008161) ENSOCUG00000013279 ENSOCUG00000011411 CDC37L1 (ENSOCUG00000003468) SPATA6L (ENSOCUG00000003455) PLPP6 (ENSOCUG00000003465) ENSOCUG00000022202 ENSOCUG00000026987 #22 ENSOCUG00000013264 ENSOCUG00000036407 GLIS3 (ENSOCUG00000023004) ENSOCUG00000027590 ENSOCUG00000023393 RFX3 (ENSOCUG00000014086) ENSOCUG00000039572 ENSOCUG00000004189 KCNV2 (ENSOCUG00000004385) VLDLR (ENSOCUG00000002231) ENSOCUG00000022775 SMARCA2 (ENSOCUG00000006320) ENSOCUG00000000241 ENSOCUG00000035677 ENSOCUG00000023438 Rabbit MODERN SPECIES 5 KCNMB3 (ENSOCUG00000010643) MFN1 (ENSOCUG00000000928) GNB4 (ENSOCUG00000000931) ACTL6A (ENSOCUG00000017883) MRPL47 (ENSOCUG00000017886) NDUFB5 (ENSOCUG00000017887) USP13 (ENSOCUG00000006043) ENSOCUG00000039309 PEX5L (ENSOCUG00000006053) TTC14 (ENSOCUG00000000806) CCDC39 (ENSOCUG00000000812) FXR1 (ENSOCUG00000023518) DNAJC19 (ENSOCUG00000014043) ENSOCUG00000035765 ENSOCUG00000031658 ENSOCUG00000028029 #22 ATP11B (ENSOCUG00000012358) DCUN1D1 (ENSOCUG00000012386) MCCC1 (ENSOCUG00000012393) ENSOCUG00000005563 RFC4 (ENSOCUG00000005014) ENSOCUG00000005011 ENSOCUG00000031344 KNG1 (ENSOCUG00000005003) HRG (ENSOCUG00000011687) FETUB (ENSOCUG00000001032) AHSG (ENSOCUG00000002057) DNAJB11 (ENSOCUG00000002053) TBCCD1 (ENSOCUG00000002050) CRYGS (ENSOCUG00000022375) DGKG (ENSOCUG00000005238)