Rodentia	DUPLICATION
Rodentia	ANCESTRAL SPECIES																	ENSGT00390000003248.a.a.a.b.cb.a.a #22
Rodentia_B	ANCESTRAL SPECIES																	ENSGT00390000003248.a.a.a.b.cb.a.a #22
Myomorpha	ANCESTRAL SPECIES																	ENSGT00390000003248.a.a.a.b.cb.a.a #22
Muroidea	ANCESTRAL SPECIES																	ENSGT00390000003248.a.a.a.b.cb.a.a #22
Muroidea_A	ANCESTRAL SPECIES																	ENSGT00390000003248.a.a.a.b.cb.a.a #22
Murinae	ANCESTRAL SPECIES																	ENSGT00390000003248.a.a.a.b.cb.a.a #22
Rat	MODERN SPECIES	19	RGD1559960 (ENSRNOG00000068175) #7	ENSRNOG00000069656 #8	Sult1c2a (ENSRNOG00000042111) #9	LOC102551938 (ENSRNOG00000067413) #10	LOC120093086 (ENSRNOG00000065530) #11	LOC301165 (ENSRNOG00000046714) #12	Sgo1 (ENSRNOG00000022499) #13	Kat2b (ENSRNOG00000011871) #14	Pp2d1 (ENSRNOG00000004719) #15	Rab5a (ENSRNOG00000057056) #16	LOC103690615 (ENSRNOG00000000124) #17	Efhb (ENSRNOG00000012618) #18	LOC689479 (ENSRNOG00000046576) #19	Kcnh8 (ENSRNOG00000058626) #20	Satb1 (ENSRNOG00000012942) #21	Rps20-ps11 (ENSRNOG00000030345) #22	Tbc1d5 (ENSRNOG00000010637) #23	Plcl2 (ENSRNOG00000013368) #24	ENSRNOG00000064269 #25	LOC120094619 (ENSRNOG00000063528) #26	AABR07066416.2 (ENSRNOG00000046104) #27	ENSRNOG00000070668 #28	LOC120093071 (ENSRNOG00000049503) #29	ENSRNOG00000070131 #30	LOC120094615 (ENSRNOG00000068213) #31	LOC120094611 (ENSRNOG00000066837) #32	LOC108351878 (ENSRNOG00000062425) #33	LOC100360856 (ENSRNOG00000047581) #34	LOC120094612 (ENSRNOG00000064783) #35	LOC120094606 (ENSRNOG00000067046) #36	ENSRNOG00000066561 #37
Mus	ANCESTRAL SPECIES																	ENSGT00390000003248.a.a.a.b.cb.a.a #22
Mus_A	ANCESTRAL SPECIES																	ENSGT00390000003248.a.a.a.b.cb.a.a #22
Mus_B	ANCESTRAL SPECIES	22	ENSGT00940000158863	ENSGT00940000159497	ENSGT00940000155059	ENSGT00940000154502	ENSGT00940000153141.B.a	ENSGT00520000055567.a.a.b	ENSGT00950000183056.B.b	ENSGT00940000160216	ENSGT00940000154383.s.a	ENSGT00950000183149.A	ENSGT00940000163618	ENSGT00940000156731	ENSGT00390000001029	ENSGT00940000159246	ENSGT00940000160233	ENSGT00390000003248.a.a.a.b.cb.a.a #22	ENSGT00390000003248.a.a.a.b.db ##22	ENSGT00940000158011	ENSGT00390000018056.f	ENSGT00390000011782
Mus_C	ANCESTRAL SPECIES	2	ENSGT00940000158863	ENSGT00940000159497	ENSGT00940000155059	ENSGT00940000154502	ENSGT00940000153141.B.a	ENSGT00520000055567.a.a.b	ENSGT00950000183056.B.b	ENSGT00940000160216	ENSGT00940000154383.s.a	ENSGT00950000183149.A	ENSGT00940000163618	ENSGT00940000156731	ENSGT00390000001029	ENSGT00940000159246	ENSGT00940000160233	ENSGT00390000003248.a.a.a.b.cb.a.a #22	ENSGT00940000158011	ENSGT00390000018056.f	ENSGT00390000011782
Steppe mouse	MODERN SPECIES	3083	ENSMSIG00000023749	Cyp7a1 (ENSMSIG00000023757)	Ubxn2b (ENSMSIG00000023768)	ENSMSIG00000023784	Fam110b (ENSMSIG00000023787)	ENSMSIG00000023798	ENSMSIG00000023802	Bpnt2 (ENSMSIG00000023807)	ENSMSIG00000023818	Penk (ENSMSIG00000023830)	Sdr16c6 (ENSMSIG00000023838)	Sdr16c5 (ENSMSIG00000023861)	Chchd7 (ENSMSIG00000023876)	Plag1 (ENSMSIG00000023923)	Mos (ENSMSIG00000023932)	ENSMSIG00000023940 #22
spretus	MODERN SPECIES	13	Rab2a (MGP_SPRETEiJ_G0026744)	Car8 (MGP_SPRETEiJ_G0026743)	Tox (MGP_SPRETEiJ_G0026742)	Nsmaf (MGP_SPRETEiJ_G0026741)	Sdcbp (MGP_SPRETEiJ_G0026740)	Cyp7a1 (MGP_SPRETEiJ_G0026739)	Ubxn2b (MGP_SPRETEiJ_G0026738)	Fam110b (MGP_SPRETEiJ_G0026737)	MGP_SPRETEiJ_G0026736	Penk (MGP_SPRETEiJ_G0026735)	Sdr16c6 (MGP_SPRETEiJ_G0026734)	Sdr16c5 (MGP_SPRETEiJ_G0026733)	Chchd7 (MGP_SPRETEiJ_G0026732)	Plag1 (MGP_SPRETEiJ_G0026731)	Mos (MGP_SPRETEiJ_G0026730)	Rps20 (MGP_SPRETEiJ_G0026729) #22	Lyn (MGP_SPRETEiJ_G0026728)	Tgs1 (MGP_SPRETEiJ_G0026727)	MGP_SPRETEiJ_G0026726	MGP_SPRETEiJ_G0026725
Cricetidae	ANCESTRAL SPECIES																	ENSGT00390000003248.a.a.a.b.cb.a.a #22
Cricetidae_B	ANCESTRAL SPECIES	50	ENSGT00940000158863	ENSGT00940000159497	ENSGT00940000155059	ENSGT00940000154502	ENSGT00940000153141.B.a	ENSGT00520000055567.a.a.b	ENSGT00950000183056.B.b	ENSGT00940000160216	ENSGT00940000154383.s.a	ENSGT00950000183149.A	ENSGT00940000163618	ENSGT00940000156731	ENSGT00390000001029	ENSGT00940000159246	ENSGT00940000160233	ENSGT00390000003248.a.a.a.b.cb.a.a #22	ENSGT00390000003248.a.a.a.b.db.d ##22	ENSGT00940000158011	ENSGT00390000018056	ENSGT00390000011782	ENSGT01070000253766.A.b	ENSGT00940000154242.b	ENSGT00940000156694	ENSGT00390000009040	ENSGT00940000154185	ENSGT00940000155121	ENSGT00940000159123	ENSGT00390000003289	ENSGT00940000157341	ENSGT00940000161936	ENSGT00390000015871
Northern American deer mouse	MODERN SPECIES	11	Car8 (ENSPEMG00000019908)	Tox (ENSPEMG00000019966)	Nsmaf (ENSPEMG00000019696)	Sdcbp (ENSPEMG00000020043)	Cyp7a1 (ENSPEMG00000019921)	Ubxn2b (ENSPEMG00000028233)	Fam110b (ENSPEMG00000028969)	Bpnt2 (ENSPEMG00000000461)	ENSPEMG00000015262	Penk (ENSPEMG00000016794)	Sdr16c6 (ENSPEMG00000023129)	Sdr16c5 (ENSPEMG00000021917)	ENSPEMG00000023256	Plag1 (ENSPEMG00000027390)	Mos (ENSPEMG00000008516)	ENSPEMG00000029829 #22	Lyn (ENSPEMG00000021545)	ENSPEMG00000029859	Tgs1 (ENSPEMG00000007957)	Tmem68 (ENSPEMG00000021534)	ENSPEMG00000030336	Xkr4 (ENSPEMG00000021985)	Rp1 (ENSPEMG00000013397)	ENSPEMG00000014386	ENSPEMG00000026817	Sox17 (ENSPEMG00000030488)	Mrpl15 (ENSPEMG00000000583)	ENSPEMG00000027695	ENSPEMG00000014138	Tcea1 (ENSPEMG00000023948)	Rgs20 (ENSPEMG00000009893)
Rodentia_A	ANCESTRAL SPECIES	18	ENSGT00940000153886.a.b.f	ENSGT00940000158863	ENSGT00940000159497	ENSGT00940000155059	ENSGT00940000154502	ENSGT00940000153141.B.a	ENSGT00520000055567.a.a.b	ENSGT00950000183056.B.b	ENSGT00940000160216	ENSGT00950000183149.A	ENSGT00940000163618	ENSGT00940000156731	ENSGT00390000001029	ENSGT00940000159246	ENSGT00940000160233	ENSGT00390000003248.a.a.a.b.cb.a.a #22	ENSGT00940000158011	ENSGT00390000018056	ENSGT00390000011782	ENSGT01070000253766.A.b	ENSGT00940000154242.b	ENSGT00940000156694	ENSGT00390000009040	ENSGT00940000154185	ENSGT00940000155121	ENSGT00940000159123	ENSGT00390000003289	ENSGT00940000157341	ENSGT00940000161936	ENSGT00390000015871	ENSGT00940000159969.a
Sciuridae	ANCESTRAL SPECIES	17	ENSGT00940000158863	ENSGT00940000159497	ENSGT00940000155059	ENSGT00940000154502	ENSGT00940000153141.B.a	ENSGT00520000055567.a.a.b	ENSGT00950000183056.B.b	ENSGT00940000160216	ENSGT00950000183149.A	ENSGT00940000163618	ENSGT00940000156731	ENSGT00390000001029	ENSGT00940000159246	ENSGT00940000160233	ENSGT00390000003248.a.a.a.b.db ##22	ENSGT00390000003248.a.a.a.b.cb.a.a #22	ENSGT00940000158011	ENSGT00390000018056	ENSGT00390000011782	ENSGT01070000253766.A.b	ENSGT00940000154242.b	ENSGT00940000156694	ENSGT00390000009040	ENSGT00940000154185	ENSGT00940000155121	ENSGT00940000159123	ENSGT00390000003289	ENSGT00940000157341	ENSGT00940000161936	ENSGT00390000015871	ENSGT00940000159969.a
Eurasian red squirrel	MODERN SPECIES		CA8 (ENSSVLG00005012006)	TOX (ENSSVLG00005011958)	NSMAF (ENSSVLG00005011910)	SDCBP (ENSSVLG00005011445)	CYP7A1 (ENSSVLG00005011337)	UBXN2B (ENSSVLG00005011261)	FAM110B (ENSSVLG00005011236)	BPNT2 (ENSSVLG00005011167)	PENK (ENSSVLG00005011127)	ENSSVLG00005010971	SDR16C5 (ENSSVLG00005010895)	ENSSVLG00005010860	CHCHD7 (ENSSVLG00005010790)	PLAG1 (ENSSVLG00005010731)	MOS (ENSSVLG00005010710)	RPS20 (ENSSVLG00005010588) #22	LYN (ENSSVLG00005010475)	TGS1 (ENSSVLG00005010446)	ENSSVLG00005010412	ENSSVLG00005010285	XKR4 (ENSSVLG00005010234)	RP1 (ENSSVLG00005009858)	SOX17 (ENSSVLG00005009789)	MRPL15 (ENSSVLG00005009764)	ENSSVLG00005009666	ENSSVLG00005009646	TCEA1 (ENSSVLG00005009501)	RGS20 (ENSSVLG00005009394)	ENSSVLG00005009360	ATP6V1H (ENSSVLG00005009299)	ENSSVLG00005009270
Marmotini	ANCESTRAL SPECIES																	ENSGT00390000003248.a.a.a.b.cb.a.a #22
Marmotini_b	ANCESTRAL SPECIES	52	ENSGT00940000157108	ENSGT00940000159307	ENSGT00940000155894	ENSGT00390000005870	ENSGT00940000157544	ENSGT00940000153141.B.a	ENSGT00520000055567.a.a.b	ENSGT00950000183056.B.b	ENSGT00940000160216	ENSGT00950000183149.A	ENSGT00940000163618	ENSGT00940000156731	ENSGT00390000001029	ENSGT00940000159246	ENSGT00940000160233	ENSGT00390000003248.a.a.a.b.cb.a.a #22	ENSGT00940000158011	ENSGT00390000018056	ENSGT00390000011782	ENSGT01070000253766.A.b	ENSGT00940000154242.b	ENSGT00940000156694	ENSGT00390000009040	ENSGT00940000154185	ENSGT00940000155121	ENSGT00940000159123	ENSGT00390000003289	ENSGT00940000157341	ENSGT00940000161936	ENSGT00390000015871	ENSGT00940000159969.a
Arctic ground squirrel	MODERN SPECIES	137																RPS20 (ENSUPAG00010002625) #22	LYN (ENSUPAG00010002635)	TMEM68 (ENSUPAG00010002929)	XKR4 (ENSUPAG00010002936)	RP1 (ENSUPAG00010002942)	ENSUPAG00010002961	SOX17 (ENSUPAG00010002964)	MRPL15 (ENSUPAG00010002973)	LYPLA1 (ENSUPAG00010002986)	TCEA1 (ENSUPAG00010003008)	ENSUPAG00010003023	RGS20 (ENSUPAG00010003027)	ATP6V1H (ENSUPAG00010003037)	OPRK1 (ENSUPAG00010003107)	ENSUPAG00010003124	NPBWR1 (ENSUPAG00010003128)
Hystricomorpha	ANCESTRAL SPECIES	12	ENSGT00940000153886.a.b.f	ENSGT00940000158863	ENSGT00940000159497	ENSGT00940000155059	ENSGT00940000154502	ENSGT00940000153141.B.a	ENSGT00520000055567.a.a.b	ENSGT00950000183056.B.b	ENSGT00940000160216	ENSGT00950000183149.A	ENSGT00940000163618	ENSGT00940000156731	ENSGT00390000001029	ENSGT00940000159246	ENSGT00940000160233	ENSGT00390000003248.a.a.a.b.cb.a.a #22	ENSGT00390000003248.a.b.b ##22	ENSGT00390000003248.a.a.a.b.cb.b.b ##22	ENSGT00940000158011	ENSGT00390000018056	ENSGT00390000011782	ENSGT01070000253766.A.b	ENSGT00940000154242.b	ENSGT00940000156694	ENSGT00390000009040	ENSGT00940000154185.cb	ENSGT00940000155121	ENSGT00940000159123	ENSGT00390000003289	ENSGT00940000157341	ENSGT00940000161936
Hystricomorpha_a	ANCESTRAL SPECIES	9	ENSGT00940000153886.a.b.f	ENSGT00940000158863	ENSGT00940000159497	ENSGT00940000155059	ENSGT00940000154502	ENSGT00940000153141.B.a	ENSGT00520000055567.a.a.b	ENSGT00950000183056.B.b	ENSGT00940000160216	ENSGT00950000183149.A	ENSGT00940000163618	ENSGT00940000156731	ENSGT00390000001029	ENSGT00940000159246	ENSGT00940000160233	ENSGT00390000003248.a.a.a.b.cb.a.a #22	ENSGT00390000003248.a.a.a.b.cb.b.b ##22	ENSGT00940000158011	ENSGT00390000018056	ENSGT00390000011782	ENSGT01070000253766.A.b	ENSGT00940000154242.b	ENSGT00940000156694	ENSGT00390000009040	ENSGT00940000154185.cb	ENSGT00940000155121	ENSGT00940000159123	ENSGT00390000003289	ENSGT00940000157341	ENSGT00940000161936	ENSGT00390000015871.v
Guinea pig	MODERN SPECIES	64								FAM110B (ENSCPOG00000033617)	BPNT2 (ENSCPOG00000023705)	PENK (ENSCPOG00000031786)	ENSCPOG00000020018	SDR16C5 (ENSCPOG00000000571)	CHCHD7 (ENSCPOG00000030280)	PLAG1 (ENSCPOG00000039131)	MOS (ENSCPOG00000020476)	ENSCPOG00000011697 #22	ENSCPOG00000030320	LYN (ENSCPOG00000011693)	TGS1 (ENSCPOG00000009713)	TMEM68 (ENSCPOG00000019826)	XKR4 (ENSCPOG00000003676)	ENSCPOG00000039324	SOX17 (ENSCPOG00000000892)	MRPL15 (ENSCPOG00000035946)	LYPLA1 (ENSCPOG00000022715)	TCEA1 (ENSCPOG00000005886)	ENSCPOG00000038533	ENSCPOG00000022816	ATP6V1H (ENSCPOG00000012174)	ENSCPOG00000023180	OPRK1 (ENSCPOG00000006607)
Hystricomorpha_b	ANCESTRAL SPECIES																	ENSGT00390000003248.a.a.a.b.cb.a.a #22
Degu	MODERN SPECIES	126																ENSODEG00000019073 #22	ENSODEG00000004554	ENSODEG00000005181	HMMR (ENSODEG00000004387)	ENSODEG00000004867	ENSODEG00000005448	TENM2 (ENSODEG00000005069)	WWC1 (ENSODEG00000004850)	RARS1 (ENSODEG00000005980)	ENSODEG00000005759	FBLL1 (ENSODEG00000019199)	PANK3 (ENSODEG00000005503)	SLIT3 (ENSODEG00000005145)	ENSODEG00000006240	INSYN2B (ENSODEG00000006097)	DOCK2 (ENSODEG00000004282)
Rodentia	ANCESTRAL SPECIES																	ENSGT00390000003248.a.a.a.b.cb.a.b ##22
Rodentia_B	ANCESTRAL SPECIES																	ENSGT00390000003248.a.a.a.b.cb.a.b ##22
Myomorpha	ANCESTRAL SPECIES																	ENSGT00390000003248.a.a.a.b.cb.a.b ##22
Muroidea	ANCESTRAL SPECIES																	ENSGT00390000003248.a.a.a.b.cb.a.b ##22
Muroidea_A	ANCESTRAL SPECIES																	ENSGT00390000003248.a.a.a.b.cb.a.b ##22
Murinae	ANCESTRAL SPECIES																	ENSGT00390000003248.a.a.a.b.cb.a.b ##22
Rat	DUPLICATION
Rat	MODERN SPECIES	13	ENSRNOG00000067722	Pdcl (ENSRNOG00000008484)	Rc3h2 (ENSRNOG00000009196)	Zbtb6 (ENSRNOG00000009340)	Zbtb26 (ENSRNOG00000009346)	Rabgap1 (ENSRNOG00000009402)	Gpr21 (ENSRNOG00000042269)	Strbp (ENSRNOG00000010150)	RGD1561137 (ENSRNOG00000030143)	Crb2 (ENSRNOG00000025498)	Dennd1a (ENSRNOG00000010526)	Lhx2 (ENSRNOG00000010551)	Nek6 (ENSRNOG00000010897)	Psmb7 (ENSRNOG00000011732)	ENSRNOG00000066446	Rps20 (ENSRNOG00000029627) ##22	Nr5a1 (ENSRNOG00000012682)	Nr6a1 (ENSRNOG00000013232)	Olfml2a (ENSRNOG00000014034)	Wdr38 (ENSRNOG00000014102)	Rpl35 (ENSRNOG00000014272)	Arpc5l (ENSRNOG00000014317)	Golga1 (ENSRNOG00000014493)	Scai (ENSRNOG00000025278)	Ppp6c (ENSRNOG00000015145)	AABR07051831.1 (ENSRNOG00000015854)	LOC100362366 (ENSRNOG00000028690)	Lrp1b (ENSRNOG00000030243)	Kynu (ENSRNOG00000029993)	Arhgap15 (ENSRNOG00000031168)	Gtdc1 (ENSRNOG00000031038)
Rat	MODERN SPECIES	15	Cyp7a1 (ENSRNOG00000009488)	Ubxn2b (ENSRNOG00000071045)	ENSRNOG00000063053	Fam110b (ENSRNOG00000009114)	ENSRNOG00000069204	Bpnt2 (ENSRNOG00000046647)	RGD1563405 (ENSRNOG00000069142)	Penk (ENSRNOG00000008943)	Sdr16c6 (ENSRNOG00000067216)	Sdr16c6 (ENSRNOG00000040151)	Sdr16c5 (ENSRNOG00000008871)	Chchd7 (ENSRNOG00000031769)	Plag1 (ENSRNOG00000008846)	LOC100364265 (ENSRNOG00000012088)	Mos (ENSRNOG00000008567)	Rps20-ps10 (ENSRNOG00000008555) ##22	Lyn (ENSRNOG00000008180)	Tgs1 (ENSRNOG00000008156)	Tmem68 (ENSRNOG00000008872)	Xkr4 (ENSRNOG00000027276)	Cyld-ps1 (ENSRNOG00000008861)	Rp1 (ENSRNOG00000008807)	ENSRNOG00000065942	Sumo4 (ENSRNOG00000069967)	Sox17 (ENSRNOG00000027357)	Mrpl15 (ENSRNOG00000008566)	Lypla1 (ENSRNOG00000008320)	Tcea1 (ENSRNOG00000022323)	Rgs20 (ENSRNOG00000008100)	Atp6v1h (ENSRNOG00000030862)	Oprk1 (ENSRNOG00000007647)
Cricetidae	ANCESTRAL SPECIES																	ENSGT00390000003248.a.a.a.b.cb.a.b ##22
Cricetidae_B	ANCESTRAL SPECIES																	ENSGT00390000003248.a.a.a.b.cb.a.b ##22
Northern American deer mouse	MODERN SPECIES	10			Tmx3 (ENSPEMG00000011968)	ENSPEMG00000030219	Dok6 (ENSPEMG00000019316)	Cd226 (ENSPEMG00000029583)	Rttn (ENSPEMG00000019864)	ENSPEMG00000027089	Socs6 (ENSPEMG00000009086)	ENSPEMG00000009228	ENSPEMG00000004621	ENSPEMG00000028176	Cbln2 (ENSPEMG00000024653)	Neto1 (ENSPEMG00000021247)	ENSPEMG00000026675	ENSPEMG00000030444 ##22	Fbxo15 (ENSPEMG00000003160)	Timm21 (ENSPEMG00000024475)	Cyb5a (ENSPEMG00000020270)	Gm17266 (ENSPEMG00000031219)	Dipk1c (ENSPEMG00000019790)	Cndp2 (ENSPEMG00000020038)	Cndp1 (ENSPEMG00000017304)	Zfp407 (ENSPEMG00000019754)	Zadh2 (ENSPEMG00000028418)	Tshz1 (ENSPEMG00000022838)	Zfp516 (ENSPEMG00000024000)	ENSPEMG00000024427	Zfp236 (ENSPEMG00000026320)	Mbp (ENSPEMG00000021451)	Galr1 (ENSPEMG00000022914)