Pecora	ANCESTRAL SPECIES	20	ENSGT00940000158863 #8	ENSGT00940000159497 #9	ENSGT00940000155059 #10	ENSGT00940000154502.o.a #11	ENSGT00940000153141.B.a #12	ENSGT00520000055567.a.a.b #13	ENSGT00950000183056.B.b	ENSGT00840000130804 #14	ENSGT00940000160216 #15	ENSGT00950000183149.A #16	ENSGT00940000163618 #17	ENSGT00940000156731 #18	ENSGT00390000001029 #19	ENSGT00940000159246 #20	ENSGT00940000160233 #21	ENSGT00390000003248.a.a.a.b.u #22	ENSGT00940000158011 #23	ENSGT00390000018056 #24	ENSGT00390000011782 #25	ENSGT01070000253766.A.b #26	ENSGT00940000154242.b #27	ENSGT00940000156694	ENSGT00390000009040.a #28	ENSGT00940000154185 #29	ENSGT00940000155121 #30	ENSGT00940000159123 #31	ENSGT00390000003289 #33	ENSGT00940000157341 #34	ENSGT00940000161936 #35	ENSGT00390000015871 #36	ENSGT00940000159969.a #37
Percora_a	ANCESTRAL SPECIES	23	ENSGT00940000158863 #8	ENSGT00940000159497 #9	ENSGT00940000155059 #10	ENSGT00940000154502.o.a #11	ENSGT00940000153141.B.a #12	ENSGT00520000055567.a.a.b #13	ENSGT00950000183056.B.b	ENSGT00840000130804 #14	ENSGT00940000160216 #15	ENSGT00950000183149.A #16	ENSGT00940000163618 #17	ENSGT00940000156731 #18	ENSGT00390000001029 #19	ENSGT00940000159246 #20	ENSGT00940000160233 #21	ENSGT00390000003248.a.a.a.b.u #22	ENSGT00940000158011 #23	ENSGT00390000018056 #24	ENSGT00390000011782 #25	ENSGT01070000253766.A.b #26	ENSGT00940000154242.b #27	ENSGT00940000156694	ENSGT00390000009040.a #28	ENSGT00940000154185.f #29	ENSGT00940000155121 #30	ENSGT00940000159123 #31	ENSGT00390000003289 #33	ENSGT00940000157341 #34	ENSGT00940000161936 #35	ENSGT00390000015871 #36	ENSGT00940000159969.a #37
Bovidae	ANCESTRAL SPECIES	22	ENSGT00940000158863 #8	ENSGT00940000159497 #9	ENSGT00940000155059 #10	ENSGT00940000154502.o.a #11	ENSGT00940000153141.B.a #12	ENSGT00520000055567.a.a.b #13	ENSGT00950000183056.B.b	ENSGT00840000130804 #14	ENSGT00940000160216 #15	ENSGT00950000183149.A #16	ENSGT00940000163618 #17	ENSGT00940000156731 #18	ENSGT00390000001029 #19	ENSGT00940000159246 #20	ENSGT00940000160233 #21	ENSGT00390000003248.a.a.a.b.u #22	ENSGT00940000158011 #23	ENSGT00390000018056 #24	ENSGT00390000011782 #25	ENSGT01070000253766.A.b #26	ENSGT00940000154242.b #27	ENSGT00940000156694	ENSGT00390000009040.a #28	ENSGT00940000154185.f #29	ENSGT00940000155121 #30	ENSGT00940000159123 #31	ENSGT00390000003289 #33	ENSGT00940000157341 #34	ENSGT00940000161936 #35	ENSGT00390000015871 #36	ENSGT00940000159969.a #37
Bovinae	ANCESTRAL SPECIES	18	ENSGT00940000158863 #8	ENSGT00940000159497 #9	ENSGT00940000155059 #10	ENSGT00940000154502.o.a #11	ENSGT00940000153141.B.a #12	ENSGT00520000055567.a.a.b #13	ENSGT00950000183056.B.b	ENSGT00840000130804 #14	ENSGT00940000160216 #15	ENSGT00950000183149.A #16	ENSGT00940000163618 #17	ENSGT00940000156731 #18	ENSGT00390000001029 #19	ENSGT00940000159246 #20	ENSGT00940000160233 #21	ENSGT00390000003248.a.a.a.b.u #22	ENSGT00940000158011 #23	ENSGT00390000018056 #24	ENSGT00390000011782 #25	ENSGT01070000253766.A.b #26	ENSGT00940000154242.b #27	ENSGT00940000156694	ENSGT00390000009040.a #28	ENSGT00940000154185.f.a #29	ENSGT00940000155121 #30	ENSGT00940000159123 #31	ENSGT00390000010130.f #32	ENSGT00390000003289.g.a #33	ENSGT00940000157341 #34	ENSGT00940000161936 #35	ENSGT00390000015871 #36
American bison	MODERN SPECIES	3036	RAB2A (ENSBBBG00000017073) #7	CA8 (ENSBBBG00000017090) #8	TOX (ENSBBBG00000017129) #9	NSMAF (ENSBBBG00000004247) #10	ENSBBBG00000017283 #11	CYP7A1 (ENSBBBG00000008342) #12	UBXN2B (ENSBBBG00000017321) #13	ENSBBBG00000007573 #14	BPNT2 (ENSBBBG00000017338) #15	PENK (ENSBBBG00000017347) #16	ENSBBBG00000017363 #17	SDR16C5 (ENSBBBG00000017391) #18	CHCHD7 (ENSBBBG00000017425) #19	PLAG1 (ENSBBBG00000017437) #20	MOS (ENSBBBG00000004319) #21	RPS20 (ENSBBBG00000017472) #22	LYN (ENSBBBG00000017506) #23	TGS1 (ENSBBBG00000017523) #24	TMEM68 (ENSBBBG00000017572) #25	XKR4 (ENSBBBG00000004357) #26	RP1 (ENSBBBG00000008007) #27	ENSBBBG00000017605 #28	ENSBBBG00000008932 #29	TCEA1 (ENSBBBG00000004377) #30	RGS20 (ENSBBBG00000017756) #31	ENSBBBG00000006782 #32	ENSBBBG00000004389 #33	OPRK1 (ENSBBBG00000017852) #34	NPBWR1 (ENSBBBG00000017860) #35	RB1CC1 (ENSBBBG00000017917) #36	ALKAL1 (ENSBBBG00000004408) #37
Bos	ANCESTRAL SPECIES	21	ENSGT00940000159497 #9	ENSGT00940000155059 #10	ENSGT00940000154502.o.a #11	ENSGT00940000153141.B.a #12	ENSGT00520000055567.a.a.b #13	ENSGT00950000183056.B.b	ENSGT00840000130804 #14	ENSGT00940000160216 #15	ENSGT00950000183149.A #16	ENSGT00940000163618 #17	ENSGT00940000156731 #18	ENSGT00970000194954	ENSGT00390000001029 #19	ENSGT00940000159246 #20	ENSGT00940000160233 #21	ENSGT00390000003248.a.a.a.b.u #22	ENSGT00940000158011 #23	ENSGT00390000018056 #24	ENSGT00390000011782 #25	ENSGT01070000253766.A.b #26	ENSGT00940000154242.b #27	ENSGT00940000156694	ENSGT00390000009040.a #28	ENSGT00940000154185.f.a #29	ENSGT00940000155121 #30	ENSGT00940000159123 #31	ENSGT00390000010130.f #32	ENSGT00390000003289.g.a #33	ENSGT00940000157341 #34	ENSGT00940000161936 #35	ENSGT00390000015871 #36
Bos_b	ANCESTRAL SPECIES	25	ENSGT00940000158863 #8	ENSGT00940000159497 #9	ENSGT00940000155059 #10	ENSGT00940000154502.o.a #11	ENSGT00940000153141.B.a #12	ENSGT00520000055567.a.a.b #13	ENSGT00950000183056.B.b	ENSGT00940000160216 #15	ENSGT00950000183149.A #16	ENSGT00940000163618 #17	ENSGT00940000156731 #18	ENSGT00970000194954	ENSGT00390000001029 #19	ENSGT00940000159246 #20	ENSGT00940000160233 #21	ENSGT00390000003248.a.a.a.b.u #22	ENSGT00940000158011 #23	ENSGT00390000018056 #24	ENSGT00390000011782 #25	ENSGT01070000253766.A.b #26	ENSGT00940000154242.b #27	ENSGT00940000156694	ENSGT00390000009040.a #28	ENSGT00940000154185.f.a #29	ENSGT00940000155121 #30	ENSGT00940000159123 #31	ENSGT00390000010130.f #32	ENSGT00390000003289.g.a #33	ENSGT00940000157341 #34	ENSGT00940000161936 #35	ENSGT00390000015871 #36
Cow	DUPLICATION
Cow	MODERN SPECIES	24	HELB (ENSBTAG00000020806)	GRIP1 (ENSBTAG00000033726)	CAND1 (ENSBTAG00000009939)	DYRK2 (ENSBTAG00000007256)	IFNG (ENSBTAG00000012529)	IL26 (ENSBTAG00000052655)	ENSBTAG00000015395	IL22 (ENSBTAG00000015407)	MDM1 (ENSBTAG00000019738)	RAP1B (ENSBTAG00000008967)	NUP107 (ENSBTAG00000006911)	SLC35E3 (ENSBTAG00000031919)	ENSBTAG00000051975	MDM2 (ENSBTAG00000010422)	CPM (ENSBTAG00000013496)	ENSBTAG00000002741 #22	CPSF6 (ENSBTAG00000007323)	LYZ (ENSBTAG00000026779)	ENSBTAG00000026322	LYZ3 (ENSBTAG00000046628)	LYZ1 (ENSBTAG00000046511)	LYZ2 (ENSBTAG00000026088)	LYSB (ENSBTAG00000026323)	ENSBTAG00000039170	ENSBTAG00000000198	ENSBTAG00000054492	ENSBTAG00000020564	ENSBTAG00000049929	ENSBTAG00000022971	LYZ1 (ENSBTAG00000011941)	YEATS4 (ENSBTAG00000002256)
Cow	MODERN SPECIES	5	TOX (ENSBTAG00000004954) #9	NSMAF (ENSBTAG00000008958) #10	SDCBP (ENSBTAG00000019910) #11	CYP7A1 (ENSBTAG00000005287) #12	UBXN2B (ENSBTAG00000009138) #13	ENSBTAG00000047136	FAM110B (ENSBTAG00000050550)	BPNT2 (ENSBTAG00000015637) #15	PENK (ENSBTAG00000004924) #16	SDR16C6 (ENSBTAG00000040321) #17	SDR16C5 (ENSBTAG00000018570) #18	ENSBTAG00000054153	CHCHD7 (ENSBTAG00000049910) #19	PLAG1 (ENSBTAG00000004022) #20	MOS (ENSBTAG00000019145) #21	RPS20 (ENSBTAG00000019147) #22	LYN (ENSBTAG00000020034) #23	TGS1 (ENSBTAG00000005898) #24	TMEM68 (ENSBTAG00000005893) #25	XKR4 (ENSBTAG00000044050) #26	RP1 (ENSBTAG00000011203) #27	SOX17 (ENSBTAG00000005748)	ENSBTAG00000052277	MRPL15 (ENSBTAG00000001174) #28	LYPLA1 (ENSBTAG00000004243) #29	TCEA1 (ENSBTAG00000003460) #30	RGS20 (ENSBTAG00000003454) #31	ENSBTAG00000054835 #32	ATP6V1H (ENSBTAG00000003450) #33	OPRK1 (ENSBTAG00000000914) #34	NPBWR1 (ENSBTAG00000016159) #35
Bos_a	ANCESTRAL SPECIES	95	ENSGT00940000159497 #9	ENSGT00940000155059 #10	ENSGT00940000154502.o.a #11	ENSGT00940000153141.B.a #12	ENSGT00520000055567.a.a.b #13	ENSGT00950000183056.B.b	ENSGT00840000130804 #14	ENSGT00940000160216 #15	ENSGT00950000183149.A #16	ENSGT00940000163618 #17	ENSGT00940000156731 #18	ENSGT00970000194954	ENSGT00390000001029 #19	ENSGT00940000159246 #20	ENSGT00940000160233 #21	ENSGT00390000003248.a.a.a.b.u #22	ENSGT00940000158011 #23	ENSGT00390000018056 #24	ENSGT00390000011782 #25	ENSGT01070000253766.A.b #26
Domestic yak	MODERN SPECIES	24	ENSBGRG00000020011	ENSBGRG00000020063	CAND1 (ENSBGRG00000020115)	DYRK2 (ENSBGRG00000020516)	ENSBGRG00000020554	ENSBGRG00000020561	IFNG (ENSBGRG00000020571)	IL26 (ENSBGRG00000020605)	IL22 (ENSBGRG00000020656)	MDM1 (ENSBGRG00000020724)	RAP1B (ENSBGRG00000021221)	NUP107 (ENSBGRG00000021761)	ENSBGRG00000022075	MDM2 (ENSBGRG00000022145)	CPM (ENSBGRG00000022902)	ENSBGRG00000022992 #22	CPSF6 (ENSBGRG00000023026)	ENSBGRG00000023194	ENSBGRG00000023254	ENSBGRG00000023317	ENSBGRG00000023368	ENSBGRG00000023386	ENSBGRG00000023408	ENSBGRG00000023471	ENSBGRG00000007422	YEATS4 (ENSBGRG00000007500)	FRS2 (ENSBGRG00000007705)	CCT2 (ENSBGRG00000007901)	LRRC10 (ENSBGRG00000008156)	ENSBGRG00000008385	RAB3IP (ENSBGRG00000008446)
Wild yak	MODERN SPECIES	210	TOX (ENSBMUG00000012126) #9	NSMAF (ENSBMUG00000012057) #10	ENSBMUG00000011917 #11	CYP7A1 (ENSBMUG00000011852) #12	UBXN2B (ENSBMUG00000011833) #13	ENSBMUG00000011815	ENSBMUG00000011795 #14	BPNT2 (ENSBMUG00000011773) #15	PENK (ENSBMUG00000011752) #16	ENSBMUG00000011743 #17	SDR16C5 (ENSBMUG00000011734) #18	ENSBMUG00000011708	ENSBMUG00000011692 #19	PLAG1 (ENSBMUG00000011659) #20	MOS (ENSBMUG00000011644) #21	RPS20 (ENSBMUG00000011614) #22	LYN (ENSBMUG00000011591) #23	TGS1 (ENSBMUG00000011561) #24	TMEM68 (ENSBMUG00000011514) #25	XKR4 (ENSBMUG00000011415) #26
Caprinae	ANCESTRAL SPECIES	18	ENSGT00940000153886.a.b #7	ENSGT00940000158863 #8	ENSGT00940000159497 #9	ENSGT00940000155059 #10	ENSGT00940000154502.o.a #11	ENSGT00940000153141.B.a #12	ENSGT00520000055567.a.a.b #13	ENSGT00950000183056.B.b	ENSGT00940000160216 #15	ENSGT00950000183149.A #16	ENSGT00940000163618 #17	ENSGT00940000156731 #18	ENSGT00390000001029 #19	ENSGT00940000159246 #20	ENSGT00940000160233 #21	ENSGT00390000003248.a.a.a.b.u #22	ENSGT00940000158011 #23	ENSGT00390000018056 #24	ENSGT00390000011782 #25	ENSGT01070000253766.A.b #26	ENSGT00940000154242.b #27	ENSGT00940000156694	ENSGT00390000009040.a #28	ENSGT00940000154185.f #29	ENSGT00940000155121 #30	ENSGT00940000159123 #31	ENSGT00390000003289 #33	ENSGT00940000157341 #34	ENSGT00940000161936 #35	ENSGT00390000015871 #36	ENSGT00940000159969.a #37
Rambouillet Sheep	MODERN SPECIES	25	CHD7 (ENSOARG00020025706)	RAB2A (ENSOARG00020025690) #7	CA8 (ENSOARG00020025684) #8	TOX (ENSOARG00020025664) #9	SDCBP (ENSOARG00020025628) ##11	CYP7A1 (ENSOARG00020025602) #12	UBXN2B (ENSOARG00020025589) #13	FAM110B (ENSOARG00020025582)	BPNT2 (ENSOARG00020025578) #15	PENK (ENSOARG00020025573) #16	ENSOARG00020025564 #17	SDR16C5 (ENSOARG00020025547) #18	CHCHD7 (ENSOARG00020025533) #19	PLAG1 (ENSOARG00020025527) #20	MOS (ENSOARG00020025525) #21	RPS20 (ENSOARG00020025515) #22	LYN (ENSOARG00020025503) #23	TMEM68 (ENSOARG00020025479) #25	XKR4 (ENSOARG00020025470) #26	RP1 (ENSOARG00020025463) #27	SOX17 (ENSOARG00020025457)	MRPL15 (ENSOARG00020025448) #28	LYPLA1 (ENSOARG00020025402) #29	TCEA1 (ENSOARG00020025361) #30	RGS20 (ENSOARG00020025341) #31	ATP6V1H (ENSOARG00020025312) #33	OPRK1 (ENSOARG00020025297) #34	NPBWR1 (ENSOARG00020025293) #35	RB1CC1 (ENSOARG00020025223) #36	ALKAL1 (ENSOARG00020025195) #37	ENSOARG00020025180
Siberian musk deer	MODERN SPECIES	49	ENSMMSG00000000065	ENSMMSG00000000077	ENSMMSG00000000087	PGBD2 (ENSMMSG00000000103)	ZNF692 (ENSMMSG00000000125)	ENSMMSG00000000154	SH3BP5L (ENSMMSG00000000169)	ENSMMSG00000000198	ENSMMSG00000000214	ENSMMSG00000000224	ENSMMSG00000000240	ENSMMSG00000000251	OR2T11 (ENSMMSG00000000272)	ENSMMSG00000000309	ENSMMSG00000000319	ENSMMSG00000000326 #22	OR2G6 (ENSMMSG00000000350)	ENSMMSG00000000357	OR2T27 (ENSMMSG00000000365)	OR2T1 (ENSMMSG00000000377)	OR2T6 (ENSMMSG00000000386)	ENSMMSG00000000394	ENSMMSG00000000400	ENSMMSG00000000425	ENSMMSG00000000438	ENSMMSG00000000448	ENSMMSG00000000461	ENSMMSG00000000475	ENSMMSG00000000487	ENSMMSG00000000497	ENSMMSG00000000509
Yarkand deer	MODERN SPECIES	13	CA8 (ENSCHYG00000025104) #8	TOX (ENSCHYG00000025044) #9	NSMAF (ENSCHYG00000024822) #10	SDCBP (ENSCHYG00000024674) #11	CYP7A1 (ENSCHYG00000024626) #12	UBXN2B (ENSCHYG00000024580) #13	FAM110B (ENSCHYG00000024557)	ENSCHYG00000024542	ENSCHYG00000024535	BPNT2 (ENSCHYG00000024500) #15	PENK (ENSCHYG00000024468) #16	ENSCHYG00000024371 #17	CHCHD7 (ENSCHYG00000024223) #19	PLAG1 (ENSCHYG00000024189) #20	MOS (ENSCHYG00000024173) #21	RPS20 (ENSCHYG00000024102) #22	LYN (ENSCHYG00000023984) #23	TGS1 (ENSCHYG00000023932) #24	TMEM68 (ENSCHYG00000023790) #25	XKR4 (ENSCHYG00000023732) #26	ENSCHYG00000023702 #27	SOX17 (ENSCHYG00000023663)	MRPL15 (ENSCHYG00000023624) #28	LYPLA1 (ENSCHYG00000023356) #29	ENSCHYG00000022967 #30	RGS20 (ENSCHYG00000022852) #31	ATP6V1H (ENSCHYG00000022766) #33	OPRK1 (ENSCHYG00000022698) #34	NPBWR1 (ENSCHYG00000022686) #35	RB1CC1 (ENSCHYG00000022542) #36	ALKAL1 (ENSCHYG00000022488) #37