Theria	ANCESTRAL SPECIES	7	ENSGT00940000153886.a.b	ENSGT00940000158863	ENSGT00940000159497	ENSGT00940000155059 #8	ENSGT00940000154502 #9	ENSGT00940000153141.B.a #11	ENSGT00520000055567.a.a.b #12	ENSGT00950000183056.B.b #13	ENSGT00940000160216 #15	ENSGT00950000183149.A #16	ENSGT00940000163618	ENSGT00940000156731 #17	ENSGT00390000001029 #19	ENSGT00940000159246 #20	ENSGT00940000160233 #21	ENSGT00390000003248.a.a.a.b #22	ENSGT00940000158011 #24	ENSGT00390000018056 #25	ENSGT00390000011782 #26	ENSGT01070000253766.A.b	ENSGT00940000164647	ENSGT00940000154242.b #27	ENSGT00940000156694	ENSGT00390000009040 #29	ENSGT00940000154185 #30	ENSGT00940000155121 #31	ENSGT00940000159123 #32	ENSGT00390000003289 #33	ENSGT00940000157341 #34	ENSGT00940000161936 #35	ENSGT00390000015871 #36
Eutheria	ANCESTRAL SPECIES	15	ENSGT00940000153886.a.b	ENSGT00940000158863	ENSGT00940000159497	ENSGT00940000155059 #8	ENSGT00940000154502 #9	ENSGT00940000153141.B.a #11	ENSGT00520000055567.a.a.b #12	ENSGT00950000183056.B.b #13	ENSGT00940000160216 #15	ENSGT00950000183149.A #16	ENSGT00940000163618	ENSGT00940000156731 #17	ENSGT00390000001029 #19	ENSGT00940000159246 #20	ENSGT00940000160233 #21	ENSGT00390000003248.a.a.a.b #22	ENSGT00940000158011 #24	ENSGT00390000018056 #25	ENSGT00390000011782 #26	ENSGT01070000253766.A.b	ENSGT00940000164647	ENSGT00940000154242.b #27	ENSGT00940000156694	ENSGT00390000009040 #29	ENSGT00940000154185 #30	ENSGT00940000155121 #31	ENSGT00940000159123 #32	ENSGT00390000003289 #33	ENSGT00940000157341 #34	ENSGT00940000161936 #35	ENSGT00390000015871 #36
Boreoeutheria	ANCESTRAL SPECIES	19	ENSGT00940000158863	ENSGT00940000159497	ENSGT00940000155059 #8	ENSGT00940000154502 #9	ENSGT00940000153141.B.a #11	ENSGT00520000055567.a.a.b #12	ENSGT00950000183056.B.b #13	ENSGT00840000130804 #14	ENSGT00940000160216 #15	ENSGT00950000183149.A #16	ENSGT00940000163618	ENSGT00940000156731 #17	ENSGT00390000001029 #19	ENSGT00940000159246 #20	ENSGT00940000160233 #21	ENSGT00390000003248.a.a.a.b #22	ENSGT00940000158011 #24	ENSGT00390000018056 #25	ENSGT00390000011782 #26	ENSGT01070000253766.A.b	ENSGT00940000164647	ENSGT00940000154242.b #27	ENSGT00940000156694	ENSGT00390000009040 #29	ENSGT00940000154185 #30	ENSGT00940000155121 #31	ENSGT00940000159123 #32	ENSGT00390000003289 #33	ENSGT00940000157341 #34	ENSGT00940000161936 #35	ENSGT00390000015871 #36
Laurasiatheria	ANCESTRAL SPECIES	18	ENSGT00940000158863	ENSGT00940000159497	ENSGT00940000155059 #8	ENSGT00940000154502 #9	ENSGT00940000153141.B.a #11	ENSGT00520000055567.a.a.b #12	ENSGT00950000183056.B.b #13	ENSGT00840000130804 #14	ENSGT00940000160216 #15	ENSGT00950000183149.A #16	ENSGT00940000163618	ENSGT00940000156731 #17	ENSGT00390000001029 #19	ENSGT00940000159246 #20	ENSGT00940000160233 #21	ENSGT00390000003248.a.a.a.b #22	ENSGT00940000158011 #24	ENSGT00390000018056 #25	ENSGT00390000011782 #26	ENSGT01070000253766.A.b	ENSGT00940000154242.b #27	ENSGT00940000156694	ENSGT00390000009040 #29	ENSGT00940000154185 #30	ENSGT00940000155121 #31	ENSGT00940000159123 #32	ENSGT00390000003289 #33	ENSGT00940000157341 #34	ENSGT00940000161936 #35	ENSGT00390000015871 #36	ENSGT00940000159969.a #37
Laurasiatheria_a	ANCESTRAL SPECIES	20	ENSGT00940000158863	ENSGT00940000159497	ENSGT00940000155059 #8	ENSGT00940000154502 #9	ENSGT00940000153141.B.a #11	ENSGT00520000055567.a.a.b #12	ENSGT00950000183056.B.b #13	ENSGT00840000130804 #14	ENSGT00940000160216 #15	ENSGT00950000183149.A #16	ENSGT00940000163618	ENSGT00940000156731 #17	ENSGT00390000001029 #19	ENSGT00940000159246 #20	ENSGT00940000160233 #21	ENSGT00390000003248.a.a.a.b #22	ENSGT00940000158011 #24	ENSGT00390000018056 #25	ENSGT00390000011782 #26	ENSGT01070000253766.A.b	ENSGT00940000154242.b #27	ENSGT00940000156694	ENSGT00390000009040 #29	ENSGT00940000154185 #30	ENSGT00940000155121 #31	ENSGT00940000159123 #32	ENSGT00390000003289 #33	ENSGT00940000157341 #34	ENSGT00940000161936 #35	ENSGT00390000015871 #36	ENSGT00940000159969.a #37
Laurasiatheria_b	ANCESTRAL SPECIES	20	ENSGT00940000158863	ENSGT00940000159497	ENSGT00940000155059 #8	ENSGT00940000154502 #9	ENSGT00940000153141.B.a #11	ENSGT00520000055567.a.a.b #12	ENSGT00950000183056.B.b #13	ENSGT00840000130804 #14	ENSGT00940000160216 #15	ENSGT00950000183149.A #16	ENSGT00940000163618	ENSGT00940000156731 #17	ENSGT00390000001029 #19	ENSGT00940000159246 #20	ENSGT00940000160233 #21	ENSGT00390000003248.a.a.a.b #22	ENSGT00940000158011 #24	ENSGT00390000018056 #25	ENSGT00390000011782 #26	ENSGT01070000253766.A.b	ENSGT00940000154242.b #27	ENSGT00940000156694	ENSGT00390000009040 #29	ENSGT00940000154185 #30	ENSGT00940000155121 #31	ENSGT00940000159123 #32	ENSGT00390000003289 #33	ENSGT00940000157341 #34	ENSGT00940000161936 #35	ENSGT00390000015871 #36	ENSGT00940000159969.a #37
Carnivora	ANCESTRAL SPECIES	22	ENSGT00940000153886.a.b	ENSGT00940000158863	ENSGT00940000159497	ENSGT00940000155059 #8	ENSGT00940000154502 #9	ENSGT00940000153141.B.a #11	ENSGT00520000055567.a.a.b #12	ENSGT00950000183056.B.b #13	ENSGT00840000130804 #14	ENSGT00940000160216 #15	ENSGT00950000183149.A #16	ENSGT00940000156731 #17	ENSGT00390000001029 #19	ENSGT00940000159246 #20	ENSGT00940000160233 #21	ENSGT00390000003248.a.a.a.b #22	ENSGT00940000158011 #24	ENSGT00390000018056 #25	ENSGT00390000011782 #26	ENSGT01070000253766.A.b	ENSGT00940000154242.b #27	ENSGT00940000156694	ENSGT00390000009040 #29	ENSGT00940000154185 #30	ENSGT00940000155121 #31	ENSGT00940000159123 #32	ENSGT00390000003289 #33	ENSGT00940000157341 #34	ENSGT00940000161936 #35	ENSGT00390000015871 #36	ENSGT00940000159969.a #37
Caniformia	ANCESTRAL SPECIES	23	ENSGT00940000153886.a.b	ENSGT00940000158863	ENSGT00940000159497	ENSGT00940000155059 #8	ENSGT00940000154502 #9	ENSGT00940000153141.B.a #11	ENSGT00520000055567.a.a.b #12	ENSGT00950000183056.B.b #13	ENSGT00840000130804 #14	ENSGT00940000160216 #15	ENSGT00950000183149.A #16	ENSGT00940000156731 #17	ENSGT00390000001029 #19	ENSGT00940000159246 #20	ENSGT00940000160233 #21	ENSGT00390000003248.a.a.a.b #22	ENSGT00940000158011 #24	ENSGT00390000018056 #25	ENSGT00390000011782 #26	ENSGT01070000253766.A.b	ENSGT00940000154242.b #27	ENSGT00940000156694	ENSGT00390000009040 #29	ENSGT00940000154185 #30	ENSGT00940000155121 #31	ENSGT00940000159123 #32	ENSGT00390000003289 #33	ENSGT00940000157341 #34	ENSGT00940000161936 #35	ENSGT00390000015871 #36	ENSGT00940000159969.a #37
Caniformia_b	ANCESTRAL SPECIES	22	ENSGT00940000153886.a.b	ENSGT00940000158863	ENSGT00940000159497	ENSGT00940000155059 #8	ENSGT00940000154502 #9	ENSGT00940000153141.B.a #11	ENSGT00520000055567.a.a.b #12	ENSGT00950000183056.B.b #13	ENSGT00840000130804 #14	ENSGT00940000160216 #15	ENSGT00950000183149.A #16	ENSGT00940000156731 #17	ENSGT00390000001029 #19	ENSGT00940000159246 #20	ENSGT00940000160233 #21	ENSGT00390000003248.a.a.a.b #22	ENSGT00940000158011 #24	ENSGT00390000018056 #25	ENSGT00390000011782 #26	ENSGT01070000253766.A.b	ENSGT00940000154242.b #27	ENSGT00940000156694	ENSGT00390000009040 #29	ENSGT00940000154185 #30	ENSGT00940000155121 #31	ENSGT00940000159123 #32	ENSGT00390000003289 #33	ENSGT00940000157341 #34	ENSGT00940000161936 #35	ENSGT01090000260046.d	ENSGT00390000015871 #36
Ursidae	ANCESTRAL SPECIES	26	ENSGT00940000158863	ENSGT00940000159497	ENSGT00940000155059 #8	ENSGT00940000154502 #9	ENSGT00940000171038 #10	ENSGT00940000153141.B.a #11	ENSGT00520000055567.a.a.b #12	ENSGT00950000183056.B.b #13	ENSGT00840000130804 #14	ENSGT00940000160216 #15	ENSGT00950000183149.A #16	ENSGT00940000156731 #17	ENSGT00390000001029 #19	ENSGT00940000159246 #20	ENSGT00940000160233 #21	ENSGT00390000003248.a.a.a.b #22	ENSGT00940000158011 #24	ENSGT00390000018056 #25	ENSGT00390000011782 #26	ENSGT01070000253766.A.b
Ursus	ANCESTRAL SPECIES	110	ENSGT00940000159497	ENSGT01030000240256 #7	ENSGT00940000155059 #8	ENSGT00940000154502 #9	ENSGT00940000171038.c #10	ENSGT00940000153141.B.a #11	ENSGT00520000055567.a.a.b #12	ENSGT00950000183056.B.b #13	ENSGT00840000130804 #14	ENSGT00940000160216 #15	ENSGT00950000183149.A #16	ENSGT00940000156731 #17	ENSGT00390000001029 #19	ENSGT00940000159246 #20	ENSGT00940000160233 #21	ENSGT00390000003248.a.a.a.b #22	ENSGT00940000158011 #24	ENSGT00390000018056 #25	ENSGT00390000011782 #26	ENSGT00940000154242.b #27	ENSGT00940000156694	ENSGT00390000009040 #29	ENSGT00940000154185 #30	ENSGT00940000155121 #31	ENSGT00940000159123 #32	ENSGT00390000003289 #33	ENSGT00940000157341 #34	ENSGT00940000161936 #35	ENSGT00390000015871 #36	ENSGT00940000159969.a #37	ENSGT00940000159905
Polar bear	MODERN SPECIES	296	ENSUMAG00000009852 #7	NSMAF (ENSUMAG00000009846) #8	SDCBP (ENSUMAG00000009840) #9	ENSUMAG00000009836 #10	CYP7A1 (ENSUMAG00000009825) #11	UBXN2B (ENSUMAG00000009820) #12	FAM110B (ENSUMAG00000009815) #13	ENSUMAG00000009802 #14	ENSUMAG00000009795 #15	PENK (ENSUMAG00000009792) #16	SDR16C5 (ENSUMAG00000009791) #17	ENSUMAG00000009789 #18	ENSUMAG00000009788 #19	PLAG1 (ENSUMAG00000009787) #20	MOS (ENSUMAG00000009785) #21	RPS20 (ENSUMAG00000009783) #22	ENSUMAG00000009782 #23	LYN (ENSUMAG00000009778) #24	TGS1 (ENSUMAG00000009761) #25	TMEM68 (ENSUMAG00000009752) #26	ENSUMAG00000009732 #27	ENSUMAG00000009720 #28	MRPL15 (ENSUMAG00000009710) #29	LYPLA1 (ENSUMAG00000009670) #30	TCEA1 (ENSUMAG00000009581) #31	RGS20 (ENSUMAG00000009575) #32	ATP6V1H (ENSUMAG00000009570) #33	OPRK1 (ENSUMAG00000009564) #34	NPBWR1 (ENSUMAG00000009560) #35	RB1CC1 (ENSUMAG00000009553) #36	ENSUMAG00000009546 #37
Giant Panda	DUPLICATION
Giant Panda	MODERN SPECIES	19	RAB2A (ENSAMEG00000005810)	CA8 (ENSAMEG00000005842)	TOX (ENSAMEG00000005857)	NSMAF (ENSAMEG00000006217) #8	SDCBP (ENSAMEG00000006161) #9	ENSAMEG00000024357 #10	CYP7A1 (ENSAMEG00000006149) #11	UBXN2B (ENSAMEG00000006131) #12	FAM110B (ENSAMEG00000019450) #13	BPNT2 (ENSAMEG00000006121) #15	PENK (ENSAMEG00000006117) #16	SDR16C5 (ENSAMEG00000006100) #17	CHCHD7 (ENSAMEG00000006095) #19	PLAG1 (ENSAMEG00000006089) #20	MOS (ENSAMEG00000019444) #21	RPS20 (ENSAMEG00000006087) #22	LYN (ENSAMEG00000001737) #24	TGS1 (ENSAMEG00000001781) #25	ENSAMEG00000001796 #26	ENSAMEG00000001804	ENSAMEG00000026283	PML (ENSAMEG00000009174)	ENSAMEG00000029549	ENSAMEG00000009170	ISLR (ENSAMEG00000019950)	STRA6 (ENSAMEG00000009123)	CCDC33 (ENSAMEG00000009093)	CYP11A1 (ENSAMEG00000009069)	SEMA7A (ENSAMEG00000009057)	ARID3B (ENSAMEG00000009014)	CLK3 (ENSAMEG00000008977)
Giant Panda	MODERN SPECIES	994																ENSAMEG00000028292 #22
Mustelinae	ANCESTRAL SPECIES	134	ENSGT00940000153649.A	ENSGT00940000153886.a.b	ENSGT00940000158863	ENSGT00940000159497	ENSGT00940000155059 #8	ENSGT00940000154502.`b.b.a #9	ENSGT00940000153141.B.a #11	ENSGT00520000055567.a.a.b #12	ENSGT00950000183056.B.b #13	ENSGT00940000160216 #15	ENSGT00950000183149.A #16	ENSGT00940000156731 #17	ENSGT00390000001029 #19	ENSGT00940000159246 #20	ENSGT00940000160233 #21	ENSGT00390000003248.a.a.a.b #22	ENSGT00940000158011 #24	ENSGT00390000018056 #25	ENSGT00390000011782 #26	ENSGT01070000253766.A.b	ENSGT00940000154242.b #27	ENSGT00940000156694	ENSGT00390000009040 #29	ENSGT00940000154185 #30	ENSGT00940000155121 #31	ENSGT00940000159123 #32	ENSGT00390000003289 #33	ENSGT00940000157341 #34
American mink	MODERN SPECIES	315											PENK (ENSNVIG00000014124) #16	RDHE2 (ENSNVIG00000014101) #17	CHCHD7 (ENSNVIG00000014049) #19	PLAG1 (ENSNVIG00000014028) #20	MOS (ENSNVIG00000014021) #21	RPS20 (ENSNVIG00000013993) #22	LYN (ENSNVIG00000013973) #24	TGS1 (ENSNVIG00000013962) #25	TMM68 (ENSNVIG00000013922) #26	XKR4 (ENSNVIG00000013907)
Ferret	MODERN SPECIES	300		TOX (ENSMPUG00000010314)	NSMAF (ENSMPUG00000010320) #8	ENSMPUG00000010339 #9	CYP7A1 (ENSMPUG00000010398) #11	UBXN2B (ENSMPUG00000010405) #12	FAM110B (ENSMPUG00000018365) #13	ENSMPUG00000010416	BPNT2 (ENSMPUG00000010419) #15	PENK (ENSMPUG00000010426) #16	SDR16C5 (ENSMPUG00000010435) #17	ENSMPUG00000018366	CHCHD7 (ENSMPUG00000010442) #19	PLAG1 (ENSMPUG00000010446) #20	MOS (ENSMPUG00000018367) #21	RPS20 (ENSMPUG00000010452) #22	LYN (ENSMPUG00000010464) #24	TGS1 (ENSMPUG00000010475) #25	TMEM68 (ENSMPUG00000010480) #26	ENSMPUG00000010486	ENSMPUG00000010493	RP1 (ENSMPUG00000010497) #27	SOX17 (ENSMPUG00000010506)	ENSMPUG00000010510	ENSMPUG00000010523	ENSMPUG00000018368	ENSMPUG00000010533 #29	LYPLA1 (ENSMPUG00000010559) #30	ENSMPUG00000010596	TCEA1 (ENSMPUG00000010602) #31	RGS20 (ENSMPUG00000010644) #32
Canidae	ANCESTRAL SPECIES	42	ENSGT00940000153649.A	ENSGT00940000153886.a.b	ENSGT00940000158863	ENSGT00940000159497	ENSGT00940000155059 #8	ENSGT00940000154502.u.a #9	ENSGT00940000153141.B.a #11	ENSGT00520000055567.a.a.b #12	ENSGT00950000183056.B.b #13	ENSGT00940000160216 #15	ENSGT00950000183149.A #16	ENSGT00940000156731 #17	ENSGT00390000001029 #19	ENSGT00940000159246 #20	ENSGT00940000160233 #21	ENSGT00390000003248.a.a.a.b #22	ENSGT00940000158011 #24	ENSGT00390000018056 #25	ENSGT00390000011782 #26	ENSGT01070000253766.A.b	ENSGT00940000154242.b #27	ENSGT00940000156694	ENSGT00390000009040 #29	ENSGT00940000154185 #30	ENSGT00940000155121 #31	ENSGT00940000159123 #32	ENSGT00390000003289 #33	ENSGT00940000157341 #34	ENSGT00940000161936 #35	ENSGT00390000015871 #36	ENSGT00940000159969.a #37
Canis_lupus	ANCESTRAL SPECIES	17	ENSGT00390000003748	ENSGT00940000155907.b	ENSGT00940000153424.a.a.d	ENSGT00940000169428	ENSGT00940000153424.a.a.c.b	ENSGT00390000017697.a	ENSGT00940000155889	ENSGT00390000001280.a	ENSGT00940000158007	ENSGT00940000155628	ENSGT00510000048252	ENSGT00390000005300	ENSGT00390000008748.b	ENSGT00940000157725	ENSGT00940000158086	ENSGT00390000003248.a.a.a.b #22	ENSGT00530000063561	ENSGT00530000063760.a	ENSGT00940000154170.B	ENSGT00390000007857	ENSGT00390000017828	ENSGT00390000010409	ENSGT00940000160167.q	ENSGT00940000161629	ENSGT00390000008092.b	ENSGT00390000017392	ENSGT00390000017625	ENSGT00390000008152.B.b	ENSGT00950000183129.a	ENSGT00940000156969	ENSGT00940000159637
Dingo	DUPLICATION
Dingo	MODERN SPECIES	205	USP3 (ENSCAFG00020009426)	FBXL22 (ENSCAFG00020009419)	ENSCAFG00020009410	ENSCAFG00020009407	DAPK2 (ENSCAFG00020009392)	CIAO2A (ENSCAFG00020009343)	SNX1 (ENSCAFG00020009326)	SNX22 (ENSCAFG00020009320)	PPIB (ENSCAFG00020009317)	CSNK1G1 (ENSCAFG00020009012)	ENSCAFG00020008966	TRIP4 (ENSCAFG00020008960)	ZNF609 (ENSCAFG00020008938)	OAZ2 (ENSCAFG00020008922)	RBPMS2 (ENSCAFG00020008908)	ENSCAFG00020008906 #22	PIF1 (ENSCAFG00020008886)	PLEKHO2 (ENSCAFG00020008874)	ANKDD1A (ENSCAFG00020008860)	SPG21 (ENSCAFG00020008856)	MTFMT (ENSCAFG00020008826)	SLC51B (ENSCAFG00020008823)	ENSCAFG00020008821	KBTBD13 (ENSCAFG00020008818)	UBAP1L (ENSCAFG00020008809)	PDCD7 (ENSCAFG00020008800)	CLPX (ENSCAFG00020008792)	CILP (ENSCAFG00020008785)	ENSCAFG00020008780	PARP16 (ENSCAFG00020008773)	IGDCC3 (ENSCAFG00020008743)
Dingo	MODERN SPECIES	7	ENSCAFG00020018076	DIAPH3 (ENSCAFG00020018085)	ENSCAFG00020018106	ENSCAFG00020018107	PCDH17 (ENSCAFG00020018109)	ENSCAFG00020018112	ENSCAFG00020018121	OLFM4 (ENSCAFG00020018137)	PCDH8 (ENSCAFG00020018138)	CNMD (ENSCAFG00020018141)	SUGT1 (ENSCAFG00020018144)	ELF1 (ENSCAFG00020018152)	WBP4 (ENSCAFG00020018156)	KBTBD6 (ENSCAFG00020018170)	KBTBD7 (ENSCAFG00020018174)	ENSCAFG00020018176 #22	MTRF1 (ENSCAFG00020018178)	ENSCAFG00020018183	ENSCAFG00020018184	RGCC (ENSCAFG00020018187)	VWA8 (ENSCAFG00020018227)	ENSCAFG00020018598	DGKH (ENSCAFG00020018605)	AKAP11 (ENSCAFG00020018682)	TNFSF11 (ENSCAFG00020018702)	FAM216B (ENSCAFG00020018715)	ENSCAFG00020018717	DNAJC15 (ENSCAFG00020018719)	ENOX1 (ENSCAFG00020018723)	CCDC122 (ENSCAFG00020018762)	LACC1 (ENSCAFG00020018765)
Dog	DUPLICATION
Dog	MODERN SPECIES	23	CA12 (ENSCAFG00845020844)	USP3 (ENSCAFG00845021124)	FBXL22 (ENSCAFG00845021485)	HERC1 (ENSCAFG00845021555)	DAPK2 (ENSCAFG00845021918)	CIAO2A (ENSCAFG00845022079)	SNX1 (ENSCAFG00845022186)	ENSCAFG00845022581	PPIB (ENSCAFG00845022646)	CSNK1G1 (ENSCAFG00845022773)	PCLAF (ENSCAFG00845023122)	TRIP4 (ENSCAFG00845023208)	ZNF609 (ENSCAFG00845023283)	OAZ2 (ENSCAFG00845023459)	RBPMS2 (ENSCAFG00845023573)	ENSCAFG00845023679 #22	PIF1 (ENSCAFG00845023739)	PLEKHO2 (ENSCAFG00845023843)	ANKDD1A (ENSCAFG00845023984)	SPG21 (ENSCAFG00845024150)	MTFMT (ENSCAFG00845024367)	SLC51B (ENSCAFG00845024623)	KBTBD13 (ENSCAFG00845024657)	PDCD7 (ENSCAFG00845024725)	UBAP1L (ENSCAFG00845024876)	CLPX (ENSCAFG00845024932)	CILP (ENSCAFG00845025013)	AVPI1 (ENSCAFG00845025073)	PARP16 (ENSCAFG00845025116)	IGDCC3 (ENSCAFG00845025254)	IGDCC4 (ENSCAFG00845025408)
Dog	MODERN SPECIES	14	ENSCAFG00845020382	TDRD3 (ENSCAFG00845020184)	ENSCAFG00845019341	ENSCAFG00845019184	PCDH17 (ENSCAFG00845019099)	ENSCAFG00845019030	ENSCAFG00845013231	ENSCAFG00845013167	OLFM4 (ENSCAFG00845013112)	ENSCAFG00845013086	ENSCAFG00845013032	ENSCAFG00845013012	ELF1 (ENSCAFG00845012922)	WBP4 (ENSCAFG00845012821)	KBTBD6 (ENSCAFG00845012777)	ENSCAFG00845012746 #22	MTRF1 (ENSCAFG00845012616)	NAA16 (ENSCAFG00845012159)	RGCC (ENSCAFG00845012012)	VWA8 (ENSCAFG00845011611)	ENSCAFG00845011514	DGKH (ENSCAFG00845010984)	AKAP11 (ENSCAFG00845010732)	TNFSF11 (ENSCAFG00845010618)	FAM216B (ENSCAFG00845010557)	ENSCAFG00845010306	DNAJC15 (ENSCAFG00845010203)	ENOX1 (ENSCAFG00845010105)	CCDC122 (ENSCAFG00845010070)	LACC1 (ENSCAFG00845010010)	SMIM2 (ENSCAFG00845009884)
Red fox	DUPLICATION
Red fox	MODERN SPECIES		FBXL22 (ENSVVUG00000012296)	HERC1 (ENSVVUG00000012408)	DAPK2 (ENSVVUG00000013611)	CIAO2A (ENSVVUG00000013643)	ENSVVUG00000013649	SNX1 (ENSVVUG00000013655)	SNX22 (ENSVVUG00000013682)	PPIB (ENSVVUG00000013694)	CSNK1G1 (ENSVVUG00000013708)	ENSVVUG00000013767	PCLAF (ENSVVUG00000013774)	TRIP4 (ENSVVUG00000013776)	ZNF609 (ENSVVUG00000013796)	ENSVVUG00000013799	RBPMS2 (ENSVVUG00000013801)	ENSVVUG00000013805 #22	PLEKHO2 (ENSVVUG00000013810)	ANKDD1A (ENSVVUG00000013820)	SPG21 (ENSVVUG00000013822)	MTFMT (ENSVVUG00000013827)	SLC51B (ENSVVUG00000013831)	RASL12 (ENSVVUG00000013838)	ENSVVUG00000013847	PDCD7 (ENSVVUG00000013851)	CLPX (ENSVVUG00000013882)	CILP (ENSVVUG00000014204)	PARP16 (ENSVVUG00000014214)	IGDCC3 (ENSVVUG00000014224)	IGDCC4 (ENSVVUG00000014242)	DPP8 (ENSVVUG00000014284)	HACD3 (ENSVVUG00000014290)
Red fox	MODERN SPECIES	61	HSPB2 (ENSVVUG00000015899)	C11orf52 (ENSVVUG00000015902)	DIXDC1 (ENSVVUG00000015914)	DLAT (ENSVVUG00000015934)	ENSVVUG00000015941	ENSVVUG00000015945	ENSVVUG00000015949	SDHD (ENSVVUG00000015950)	IL18 (ENSVVUG00000015952)	TEX12 (ENSVVUG00000015963)	BCO2 (ENSVVUG00000015967)	PTS (ENSVVUG00000015979)	ENSVVUG00000015984	ENSVVUG00000015988	ENSVVUG00000016018	ENSVVUG00000016025 #22	NCAM1 (ENSVVUG00000016037)	ENSVVUG00000016052	TTC12 (ENSVVUG00000016067)	ANKK1 (ENSVVUG00000016115)	DRD2 (ENSVVUG00000016119)	ZW10 (ENSVVUG00000016132)	CLDN25 (ENSVVUG00000016173)	USP28 (ENSVVUG00000016186)	HTR3B (ENSVVUG00000016234)	HTR3A (ENSVVUG00000016249)	ZBTB16 (ENSVVUG00000016272)	ENSVVUG00000016275	NNMT (ENSVVUG00000016281)
Red fox	MODERN SPECIES	3	ENSVVUG00000018049	CA8 (ENSVVUG00000018041)	TOX (ENSVVUG00000018003)	NSMAF (ENSVVUG00000017979) #8	SDCBP (ENSVVUG00000017912) #9	ENSVVUG00000017905	CYP7A1 (ENSVVUG00000017882) #11	UBXN2B (ENSVVUG00000017875) #12	ENSVVUG00000017870	BPNT2 (ENSVVUG00000017862) #15	PENK (ENSVVUG00000017856) #16	SDR16C5 (ENSVVUG00000017852) #17	CHCHD7 (ENSVVUG00000017849) #19	PLAG1 (ENSVVUG00000017846) #20	MOS (ENSVVUG00000017842) #21	RPS20 (ENSVVUG00000017835) #22	LYN (ENSVVUG00000017823) #24	TGS1 (ENSVVUG00000017821) #25	TMEM68 (ENSVVUG00000017816) #26	ENSVVUG00000017810	XKR4 (ENSVVUG00000017809)	ENSVVUG00000017799	RP1 (ENSVVUG00000017796) #27	ENSVVUG00000017795	MRPL15 (ENSVVUG00000017791) #29	TCEA1 (ENSVVUG00000017781) #31	ENSVVUG00000017778 #32	ATP6V1H (ENSVVUG00000017772) #33	ENSVVUG00000017766	ENSVVUG00000017765	OPRK1 (ENSVVUG00000017764) #34
Red fox	MODERN SPECIES	53															ANKH (ENSVVUG00000030256)	ENSVVUG00000030264 #22	ZNF622 (ENSVVUG00000030273)	MYO10 (ENSVVUG00000030278)	ENSVVUG00000030279	CDH18 (ENSVVUG00000030291)	ENSVVUG00000030292	CDH12 (ENSVVUG00000030295)	ENSVVUG00000030304	CDH10 (ENSVVUG00000030310)	ENSVVUG00000030312	CDH9 (ENSVVUG00000000062)	ENSVVUG00000000102	CDH6 (ENSVVUG00000000446)
Red fox	MODERN SPECIES	78	PCDH17 (ENSVVUG00000028814)	ENSVVUG00000028813	ENSVVUG00000028807	ENSVVUG00000028805	ENSVVUG00000028804	ENSVVUG00000028792	ENSVVUG00000028790	OLFM4 (ENSVVUG00000028777)	PCDH8 (ENSVVUG00000028776)	CNMD (ENSVVUG00000028772)	SUGT1 (ENSVVUG00000028767)	ELF1 (ENSVVUG00000028763)	WBP4 (ENSVVUG00000028761)	KBTBD6 (ENSVVUG00000028760)	ENSVVUG00000028758	ENSVVUG00000028757 #22	MTRF1 (ENSVVUG00000028755)	NAA16 (ENSVVUG00000028743)	ENSVVUG00000028742	VWA8 (ENSVVUG00000028708)	DGKH (ENSVVUG00000028597)	AKAP11 (ENSVVUG00000028556)	TNFSF11 (ENSVVUG00000028544)	FAM216B (ENSVVUG00000028542)	ENSVVUG00000028538	ENSVVUG00000028527	ENSVVUG00000028523	ENOX1 (ENSVVUG00000028503)
Felidae	ANCESTRAL SPECIES	22	ENSGT00940000153649.A	ENSGT00940000153886.a.b	ENSGT00940000158863	ENSGT00940000159497	ENSGT00940000155059 #8	ENSGT00940000154502 #9	ENSGT00940000153141.B.a #11	ENSGT00520000055567.a.a.b #12	ENSGT00950000183056.B.b #13	ENSGT00940000160216 #15	ENSGT00950000183149.A #16	ENSGT00940000156731 #17	ENSGT00390000001029 #19	ENSGT00940000159246 #20	ENSGT00940000160233 #21	ENSGT00390000003248.a.a.a.b #22	ENSGT00940000158011 #24	ENSGT00390000018056 #25	ENSGT00390000011782 #26	ENSGT01070000253766.A.b	ENSGT00940000154242.b #27	ENSGT00940000156694	ENSGT01070000254546	ENSGT00390000009040 #29	ENSGT00940000154185 #30	ENSGT00940000155121 #31	ENSGT00940000159123 #32	ENSGT00390000003289 #33	ENSGT00940000157341 #34	ENSGT00940000161936 #35	ENSGT00390000015871 #36
Panthera	ANCESTRAL SPECIES	16	ENSGT00940000153649.A	ENSGT00940000153886.a.b	ENSGT00940000158863	ENSGT00940000159497	ENSGT00940000155059 #8	ENSGT00940000154502 #9	ENSGT00940000153141.B.a #11	ENSGT00520000055567.a.a.b #12	ENSGT00950000183056.B.b #13	ENSGT00940000160216 #15	ENSGT00950000183149.A #16	ENSGT00940000156731 #17	ENSGT00390000001029 #19	ENSGT00940000159246 #20	ENSGT00940000160233 #21	ENSGT00390000003248.a.a.a.b #22	ENSGT00940000158011 #24	ENSGT00390000018056 #25	ENSGT00390000011782 #26	ENSGT01070000253766.A.b	ENSGT00940000154242.b #27	ENSGT00940000156694	ENSGT01070000254546	ENSGT00390000009040 #29	ENSGT00940000154185 #30	ENSGT00940000155121 #31	ENSGT00940000159123 #32	ENSGT00390000003289 #33	ENSGT00940000157341 #34	ENSGT00940000161936 #35	ENSGT00390000015871 #36
Panthera_a	ANCESTRAL SPECIES	16	ENSGT00940000153649.A	ENSGT00940000153886.a.b	ENSGT00940000158863	ENSGT00940000159497	ENSGT00940000155059 #8	ENSGT00940000154502 #9	ENSGT00940000153141.B.a #11	ENSGT00520000055567.a.a.b #12	ENSGT00950000183056.B.b #13	ENSGT00940000160216 #15	ENSGT00950000183149.A #16	ENSGT00940000156731 #17	ENSGT00390000001029 #19	ENSGT00940000159246 #20	ENSGT00940000160233 #21	ENSGT00390000003248.a.a.a.b #22	ENSGT00940000158011 #24	ENSGT00390000018056 #25	ENSGT00390000011782 #26	ENSGT01070000253766.A.b	ENSGT00940000154242.b #27	ENSGT00940000156694	ENSGT01070000254546	ENSGT00390000009040 #29	ENSGT00940000154185 #30	ENSGT00940000155121 #31	ENSGT00940000159123 #32	ENSGT00390000003289 #33	ENSGT00940000157341 #34	ENSGT00940000161936 #35	ENSGT00390000015871 #36
leopard	DUPLICATION
leopard	MODERN SPECIES	37	RUNX3 (ENSPPRG00000001924)	ENSPPRG00000001651	ENSPPRG00000001638	RSRP1 (ENSPPRG00000001204)	TMEM50A (ENSPPRG00000000857)	ENSPPRG00000000586	MACO1 (ENSPPRG00000000258)	LDLRAP1 (ENSPPRG00000000074)	MAN1C1 (ENSPPRG00000022702)	SELENON (ENSPPRG00000022102)	MTFR1L (ENSPPRG00000019260)	AUNIP (ENSPPRG00000017004)	PAQR7 (ENSPPRG00000021047)	STMN1 (ENSPPRG00000016135)	PAFAH2 (ENSPPRG00000014671)	ENSPPRG00000021008 #22
leopard	MODERN SPECIES	84	RAB2A (ENSPPRG00000012945)	CA8 (ENSPPRG00000012015)	TOX (ENSPPRG00000009925)	NSMAF (ENSPPRG00000009327) #8	SDCBP (ENSPPRG00000006324) #9	CYP7A1 (ENSPPRG00000005172) #11	UBXN2B (ENSPPRG00000004977) #12	ENSPPRG00000014954 #13	ENSPPRG00000014945 #13	BPNT2 (ENSPPRG00000004394) #15	PENK (ENSPPRG00000004334) #16	SDR16C5 (ENSPPRG00000003488) #17	CHCHD7 (ENSPPRG00000002603) #19	PLAG1 (ENSPPRG00000002026) #20	MOS (ENSPPRG00000014813) #21	RPS20 (ENSPPRG00000001787) #22	LYN (ENSPPRG00000001330) #24	TGS1 (ENSPPRG00000000677) #25	TMEM68 (ENSPPRG00000000512) #26	XKR4 (ENSPPRG00000023126)
lion	DUPLICATION
lion	MODERN SPECIES	8	RUNX3 (ENSPLOG00000013543)	ENSPLOG00000013477	ENSPLOG00000013438	RSRP1 (ENSPLOG00000013415)	TMEM50A (ENSPLOG00000013372)	ENSPLOG00000013211	MACO1 (ENSPLOG00000013097)	LDLRAP1 (ENSPLOG00000013029)	MAN1C1 (ENSPLOG00000012845)	SELENON (ENSPLOG00000012695)	AUNIP (ENSPLOG00000012594)	MTFR1L (ENSPLOG00000012537)	PAQR7 (ENSPLOG00000012514)	STMN1 (ENSPLOG00000012470)	PAFAH2 (ENSPLOG00000012425)	ENSPLOG00000012401 #22	EXTL1 (ENSPLOG00000012288)	SLC30A2 (ENSPLOG00000012129)	TRIM63 (ENSPLOG00000012034)	PDIK1L (ENSPLOG00000011991)	FAM110D (ENSPLOG00000011975) ##13	ENSPLOG00000011913	ZNF593 (ENSPLOG00000011868)	ZNF593OS (ENSPLOG00000011833)	CNKSR1 (ENSPLOG00000011375)	CATSPER4 (ENSPLOG00000011265)	CEP85 (ENSPLOG00000011133)	SH3BGRL3 (ENSPLOG00000011054)	UBXN11 (ENSPLOG00000010922) ##12	CD52 (ENSPLOG00000010883)	CRYBG2 (ENSPLOG00000010761)
lion	MODERN SPECIES	509	CHD7 (ENSPLOG00000008970)	RAB2A (ENSPLOG00000000020)	CA8 (ENSPLOG00000000055)	TOX (ENSPLOG00000000065)	NSMAF (ENSPLOG00000000085) #8	SDCBP (ENSPLOG00000000123) #9	CYP7A1 (ENSPLOG00000000142) #11	UBXN2B (ENSPLOG00000000158) #12	FAM110B (ENSPLOG00000000166) #13	BPNT2 (ENSPLOG00000000177) #15	PENK (ENSPLOG00000000187) #16	SDR16C5 (ENSPLOG00000000199) #17	CHCHD7 (ENSPLOG00000000226) #19	PLAG1 (ENSPLOG00000000246) #20	MOS (ENSPLOG00000000254) #21	ENSPLOG00000000280 #22	LYN (ENSPLOG00000000327) #24	TGS1 (ENSPLOG00000000349) #25	TMEM68 (ENSPLOG00000000394) #26	XKR4 (ENSPLOG00000000434)	ENSPLOG00000000462 #27	SOX17 (ENSPLOG00000000493)	ENSPLOG00000000502	MRPL15 (ENSPLOG00000000514) #29	LYPLA1 (ENSPLOG00000000564) #30	TCEA1 (ENSPLOG00000000655) #31	ENSPLOG00000000706	ATP6V1H (ENSPLOG00000000736) #33	OPRK1 (ENSPLOG00000000775) #34	NPBWR1 (ENSPLOG00000000787) #35	RB1CC1 (ENSPLOG00000000813) #36
Tiger	DUPLICATION
Tiger	MODERN SPECIES	187	RCAN3 (ENSPTIG00000012025)	NCMAP (ENSPTIG00000011435)	ENSPTIG00000008778	CLIC4 (ENSPTIG00000008083)	ENSPTIG00000007036	ENSPTIG00000005711	TMEM50A (ENSPTIG00000004884)	ENSPTIG00000015194	MACO1 (ENSPTIG00000011078)	LDLRAP1 (ENSPTIG00000010439)	MAN1C1 (ENSPTIG00000005865)	SELENON (ENSPTIG00000022104)	MTFR1L (ENSPTIG00000021874)	AUNIP (ENSPTIG00000021670)	STMN1 (ENSPTIG00000020918)	ENSPTIG00000001971 #22	PAFAH2 (ENSPTIG00000020048)
Tiger	MODERN SPECIES	389												SDR16C5 (ENSPTIG00000010766) #17	CHCHD7 (ENSPTIG00000008683) #19	PLAG1 (ENSPTIG00000007814) #20	MOS (ENSPTIG00000005253) #21	ENSPTIG00000006613 #22	LYN (ENSPTIG00000005632) #24	TGS1 (ENSPTIG00000005122) #25	TMEM68 (ENSPTIG00000021279) #26	XKR4 (ENSPTIG00000020793)
Cat	DUPLICATION
Cat	MODERN SPECIES	239	CLIC4 (ENSFCAG00000044507)	RUNX3 (ENSFCAG00000036616)	ENSFCAG00000043095	ENSFCAG00000010324	RSRP1 (ENSFCAG00000029142)	TMEM50A (ENSFCAG00000012788)	ENSFCAG00000012789	MACO1 (ENSFCAG00000012790)	LDLRAP1 (ENSFCAG00000036460)	MAN1C1 (ENSFCAG00000012792)	SELENON (ENSFCAG00000012793)	MTFR1L (ENSFCAG00000012794)	PAQR7 (ENSFCAG00000026046)	ENSFCAG00000040721	PAFAH2 (ENSFCAG00000012798)	ENSFCAG00000037910 #22	EXTL1 (ENSFCAG00000012799)	SLC30A2 (ENSFCAG00000045714)	TRIM63 (ENSFCAG00000012801)	PDIK1L (ENSFCAG00000025403)	FAM110D (ENSFCAG00000024467) ##13	C1orf232 (ENSFCAG00000040939)	ZNF593 (ENSFCAG00000023239)	ZNF593OS (ENSFCAG00000032124)	CNKSR1 (ENSFCAG00000012803)	CATSPER4 (ENSFCAG00000012804)	CEP85 (ENSFCAG00000012805)	SH3BGRL3 (ENSFCAG00000012806)	UBXN11 (ENSFCAG00000012807) ##12	ENSFCAG00000049194	CD52 (ENSFCAG00000023721)
Cat	MODERN SPECIES	249	RAB2A (ENSFCAG00000024352)	CA8 (ENSFCAG00000010244)	TOX (ENSFCAG00000005993)	NSMAF (ENSFCAG00000008007) #8	SDCBP (ENSFCAG00000026811) #9	CYP7A1 (ENSFCAG00000008003) #11	UBXN2B (ENSFCAG00000022163) #12	FAM110B (ENSFCAG00000042816) #13	BPNT2 (ENSFCAG00000040896) #15	ENSFCAG00000026194	PENK (ENSFCAG00000046182) #16	SDR16C5 (ENSFCAG00000014982) #17	CHCHD7 (ENSFCAG00000032943) #19	PLAG1 (ENSFCAG00000014980) #20	MOS (ENSFCAG00000003663) #21	RPS20 (ENSFCAG00000029233) #22	LYN (ENSFCAG00000023614) #24	TGS1 (ENSFCAG00000011478) #25	TMEM68 (ENSFCAG00000011477) #26	XKR4 (ENSFCAG00000008909)	RP1 (ENSFCAG00000028934) #27	SOX17 (ENSFCAG00000045851)	ENSFCAG00000039931	MRPL15 (ENSFCAG00000033969) #29	LYPLA1 (ENSFCAG00000023494) #30	TCEA1 (ENSFCAG00000014436) #31	ENSFCAG00000014408 #32	ATP6V1H (ENSFCAG00000014405) #33	OPRK1 (ENSFCAG00000013774) #34	NPBWR1 (ENSFCAG00000040203) #35	RB1CC1 (ENSFCAG00000010353) #36
Laurasiatheria_c	ANCESTRAL SPECIES	19	ENSGT00940000158863	ENSGT00940000159497	ENSGT00940000155059 #8	ENSGT00940000154502 #9	ENSGT00940000153141.B.a #11	ENSGT00520000055567.a.a.b #12	ENSGT00950000183056.B.b #13	ENSGT00990000212811	ENSGT00940000160216 #15	ENSGT00950000183149.A #16	ENSGT00940000163618	ENSGT00940000156731 #17	ENSGT00390000001029 #19	ENSGT00940000159246 #20	ENSGT00940000160233 #21	ENSGT00390000003248.a.a.a.b #22	ENSGT00940000158011 #24	ENSGT00390000018056 #25	ENSGT00390000011782 #26	ENSGT01070000253766.A.b	ENSGT00940000154242.b #27	ENSGT00940000156694	ENSGT00390000009040 #29	ENSGT00940000154185 #30	ENSGT00940000155121 #31	ENSGT00940000159123 #32	ENSGT00390000003289 #33	ENSGT00940000157341 #34	ENSGT00940000161936 #35	ENSGT00390000015871 #36	ENSGT00940000159969.a #37
Chiroptera	ANCESTRAL SPECIES	42	ENSGT00940000153886.a.b	ENSGT00940000158863	ENSGT00940000159497	ENSGT00940000155059 #8	ENSGT00940000154502 #9	ENSGT00940000153141.B.a #11	ENSGT00520000055567.a.a.b #12	ENSGT00950000183056.B.b #13	ENSGT00940000160216 #15	ENSGT00950000183149.A #16	ENSGT00940000163618	ENSGT00940000156731 #17	ENSGT00390000001029 #19	ENSGT00940000159246 #20	ENSGT00940000160233 #21	ENSGT00390000003248.a.a.a.b #22	ENSGT00940000158011 #24	ENSGT00390000018056 #25	ENSGT00390000011782 #26	ENSGT01070000253766.A.b	ENSGT00940000154242.b #27	ENSGT00940000156694	ENSGT00390000009040 #29	ENSGT00940000154185 #30	ENSGT00940000155121 #31	ENSGT00940000159123 #32	ENSGT00390000003289 #33	ENSGT00940000157341 #34	ENSGT00940000161936 #35	ENSGT00390000015871 #36	ENSGT00940000159905
Megabat	MODERN SPECIES	3311																RPS20 (ENSPVAG00000016402) #22	LYN (ENSPVAG00000016401) #24	TGS1 (ENSPVAG00000016399) #25	TMEM68 (ENSPVAG00000016397) #26	XKR4 (ENSPVAG00000016396)
Microchiroptera	ANCESTRAL SPECIES	41	ENSGT00940000153886.a.b	ENSGT00940000158863	ENSGT00940000159497	ENSGT00940000155059 #8	ENSGT00940000154502 #9	ENSGT00940000153141.B.a #11	ENSGT00520000055567.a.a.b #12	ENSGT00950000183056.B.b #13	ENSGT00940000160216 #15	ENSGT00950000183149.A #16	ENSGT00940000163618	ENSGT00940000156731 #17	ENSGT00390000001029 #19	ENSGT00940000159246 #20	ENSGT00940000160233 #21	ENSGT00390000003248.a.a.a.b #22	ENSGT00940000158011 #24	ENSGT00390000018056 #25	ENSGT00390000011782 #26	ENSGT01070000253766.A.b	ENSGT00940000154242.b #27	ENSGT00940000156694	ENSGT00390000009040 #29	ENSGT00940000154185 #30	ENSGT00940000155121 #31	ENSGT00940000159123 #32	ENSGT00390000003289 #33	ENSGT00940000157341 #34	ENSGT00940000161936 #35	ENSGT00390000015871 #36	ENSGT00940000159905
Greater horseshoe bat	MODERN SPECIES	5	ENSRFEG00010007288	TOX (ENSRFEG00010007308)	NSMAF (ENSRFEG00010007360) #8	SDCBP (ENSRFEG00010007422) #9	CYP7A1 (ENSRFEG00010007643) #11	UBXN2B (ENSRFEG00010007689) #12	ENSRFEG00010007735	FAM110B (ENSRFEG00010007745) #13	BPNT2 (ENSRFEG00010007765) #15	PENK (ENSRFEG00010007792) #16	ENSRFEG00010007826	SDR16C5 (ENSRFEG00010007843) #17	CHCHD7 (ENSRFEG00010007883) #19	PLAG1 (ENSRFEG00010008003) #20	MOS (ENSRFEG00010008043) #21	RPS20 (ENSRFEG00010008066) #22	LYN (ENSRFEG00010008285) #24	TGS1 (ENSRFEG00010008465) #25	TMEM68 (ENSRFEG00010008543) #26	ENSRFEG00010008656	XKR4 (ENSRFEG00010008664)	ENSRFEG00010008703	ENSRFEG00010008837	RP1 (ENSRFEG00010008854) #27	SOX17 (ENSRFEG00010008892)	ENSRFEG00010008939 #29	TCEA1 (ENSRFEG00010009037) #31	RGS20 (ENSRFEG00010009394) #32	ENSRFEG00010009490	ATP6V1H (ENSRFEG00010009527) #33	OPRK1 (ENSRFEG00010009620) #34
Microbat	MODERN SPECIES	954	RAB2A (ENSMLUG00000002855)	CA8 (ENSMLUG00000009024)	ENSMLUG00000001254	TOX (ENSMLUG00000001247)	NSMAF (ENSMLUG00000004814) #8	ENSMLUG00000004807 #9	CYP7A1 (ENSMLUG00000004797) #11	UBXN2B (ENSMLUG00000022243) #12	FAM110B (ENSMLUG00000011997) #13	BPNT2 (ENSMLUG00000030180) #15	PENK (ENSMLUG00000002095) #16	SDR16C5 (ENSMLUG00000002087) #17	CHCHD7 (ENSMLUG00000002085) #19	PLAG1 (ENSMLUG00000022542) #20	MOS (ENSMLUG00000014866) #21	RPS20 (ENSMLUG00000029059) #22	LYN (ENSMLUG00000014860) #24	TGS1 (ENSMLUG00000014857) #25	TMEM68 (ENSMLUG00000014855) #26	XKR4 (ENSMLUG00000010742)	RP1 (ENSMLUG00000010162) #27	SOX17 (ENSMLUG00000010149)	MRPL15 (ENSMLUG00000001482) #29	ENSMLUG00000008208 #30	TCEA1 (ENSMLUG00000001005) #31	ENSMLUG00000001001 #32	ATP6V1H (ENSMLUG00000000993) #33	ENSMLUG00000023216	OPRK1 (ENSMLUG00000015401) #34	TBC1D31 (ENSMLUG00000015809)	DERL1 (ENSMLUG00000009085)
Equus	ANCESTRAL SPECIES	14	ENSGT00940000158863	ENSGT00940000159497	ENSGT00940000155059 #8	ENSGT00940000154502 #9	ENSGT00940000153141.B.a #11	ENSGT00520000055567.a.a.b #12	ENSGT00950000183056.B.b #13	ENSGT00990000212811	ENSGT00940000160216 #15	ENSGT00950000183149.A #16	ENSGT00940000163618	ENSGT00940000156731 #17	ENSGT00390000001029 #19	ENSGT00940000159246 #20	ENSGT00940000160233 #21	ENSGT00390000003248.a.a.a.b #22	ENSGT00940000158011 #24	ENSGT00390000018056 #25	ENSGT00390000011782 #26	ENSGT01070000253766.A.b	ENSGT00940000154242.b #27	ENSGT00940000156694	ENSGT00390000009040 #29	ENSGT00940000154185 #30	ENSGT00940000155121 #31	ENSGT00940000159123 #32	ENSGT00390000003289 #33	ENSGT00940000157341 #34	ENSGT00940000161936 #35	ENSGT00390000015871 #36	ENSGT00940000159969.a #37
Donkey	MODERN SPECIES	3	ENSEASG00005016264	TOX (ENSEASG00005016265)	NSMAF (ENSEASG00005016270) #8	SDCBP (ENSEASG00005016275) #9	CYP7A1 (ENSEASG00005016330) #11	UBXN2B (ENSEASG00005016334) #12	FAM110B (ENSEASG00005024095) #13	ENSEASG00005030180	BPNT2 (ENSEASG00005016346) #15	PENK (ENSEASG00005030368) #16	ENSEASG00005016354	SDR16C5 (ENSEASG00005016356) #17	CHCHD7 (ENSEASG00005016359) #19	PLAG1 (ENSEASG00005016361) #20	MOS (ENSEASG00005036688) #21	RPS20 (ENSEASG00005016365) #22	LYN (ENSEASG00005016369) #24	TGS1 (ENSEASG00005016371) #25	TMEM68 (ENSEASG00005016372) #26	XKR4 (ENSEASG00005035480)	RP1 (ENSEASG00005016381) #27	SOX17 (ENSEASG00005028498)	ENSEASG00005025388	ENSEASG00005035435	ENSEASG00005027512	ENSEASG00005035589 #29	ENSEASG00005029551	LYPLA1 (ENSEASG00005020322) #30	TCEA1 (ENSEASG00005020313) #31	RGS20 (ENSEASG00005020310) #32	ATP6V1H (ENSEASG00005020298) #33
Horse	MODERN SPECIES	30	TOX (ENSECAG00000022430)	NSMAF (ENSECAG00000000565) #8	SDCBP (ENSECAG00000015053) #9	CYP7A1 (ENSECAG00000012946) #11	UBXN2B (ENSECAG00000017075) #12	FAM110B (ENSECAG00000004777) #13	ENSECAG00000028112	BPNT2 (ENSECAG00000020044) #15	ENSECAG00000056448	PENK (ENSECAG00000024110) #16	ENSECAG00000006420	SDR16C5 (ENSECAG00000008479) #17	CHCHD7 (ENSECAG00000010468) #19	PLAG1 (ENSECAG00000010773) #20	MOS (ENSECAG00000012087) #21	RPS20 (ENSECAG00000012463) #22	LYN (ENSECAG00000012862) #24	TGS1 (ENSECAG00000019399) #25	TMEM68 (ENSECAG00000000568) #26	XKR4 (ENSECAG00000006978)	RP1 (ENSECAG00000007686) #27	ENSECAG00000043138	ENSECAG00000051067	MRPL15 (ENSECAG00000012110) #29	LYPLA1 (ENSECAG00000016530) #30	ENSECAG00000052889	TCEA1 (ENSECAG00000013436) #31	ENSECAG00000050151	RGS20 (ENSECAG00000018510) #32	ENSECAG00000044966	ATP6V1H (ENSECAG00000024159) #33
Artiodactyla	ANCESTRAL SPECIES	20	ENSGT00940000158863	ENSGT00940000159497	ENSGT00940000155059 #8	ENSGT00940000154502 #9	ENSGT00940000153141.B.a #11	ENSGT00520000055567.a.a.b #12	ENSGT00950000183056.B.b #13	ENSGT00840000130804 #14	ENSGT00940000160216 #15	ENSGT00950000183149.A #16	ENSGT00940000163618	ENSGT00940000156731 #17	ENSGT00390000001029 #19	ENSGT00940000159246 #20	ENSGT00940000160233 #21	ENSGT00390000003248.a.a.a.b #22	ENSGT00940000158011 #24	ENSGT00390000018056 #25	ENSGT00390000011782 #26	ENSGT01070000253766.A.b	ENSGT00940000154242.b #27	ENSGT00940000156694	ENSGT00390000009040 #29	ENSGT00940000154185 #30	ENSGT00940000155121 #31	ENSGT00940000159123 #32	ENSGT00390000003289 #33	ENSGT00940000157341 #34	ENSGT00940000161936 #35	ENSGT00390000015871 #36	ENSGT00940000159969.a #37
Artiodactyla_a	ANCESTRAL SPECIES	20	ENSGT00940000158863	ENSGT00940000159497	ENSGT00940000155059 #8	ENSGT00940000154502 #9	ENSGT00940000153141.B.a #11	ENSGT00520000055567.a.a.b #12	ENSGT00950000183056.B.b #13	ENSGT00840000130804 #14	ENSGT00940000160216 #15	ENSGT00950000183149.A #16	ENSGT00940000163618	ENSGT00940000156731 #17	ENSGT00390000001029 #19	ENSGT00940000159246 #20	ENSGT00940000160233 #21	ENSGT00390000003248.a.a.a.b #22	ENSGT00940000158011 #24	ENSGT00390000018056 #25	ENSGT00390000011782 #26	ENSGT01070000253766.A.b	ENSGT00940000154242.b #27	ENSGT00940000156694	ENSGT00390000009040 #29	ENSGT00940000154185 #30	ENSGT00940000155121 #31	ENSGT00940000159123 #32	ENSGT00390000003289 #33	ENSGT00940000157341 #34	ENSGT00940000161936 #35	ENSGT00390000015871 #36	ENSGT00940000159969.a #37
Camelidae	ANCESTRAL SPECIES	77	ENSGT00940000153886.a.b	ENSGT00940000158863	ENSGT00940000159497	ENSGT00940000155059 #8	ENSGT00940000154502 #9	ENSGT00940000153141.B.a #11	ENSGT00520000055567.a.a.b #12	ENSGT00950000183056.B.b #13	ENSGT00940000160216 #15	ENSGT00950000183149.A #16	ENSGT00940000163618	ENSGT00940000156731 #17	ENSGT00390000001029 #19	ENSGT00940000159246 #20	ENSGT00940000160233 #21	ENSGT00390000003248.a.a.a.b #22	ENSGT00940000158011 #24	ENSGT00390000018056 #25	ENSGT00390000011782 #26	ENSGT01070000253766.A.b	ENSGT00940000154242.b #27	ENSGT00940000156694	ENSGT00390000009040 #29	ENSGT00940000154185 #30	ENSGT00940000155121 #31	ENSGT00940000159123 #32	ENSGT00390000003289 #33	ENSGT00940000157341 #34	ENSGT00940000161936 #35	ENSGT00390000015871 #36	ENSGT00940000159969.a #37
Arabian camel	MODERN SPECIES	21	RAB2A (ENSCDRG00005020500)	CA8 (ENSCDRG00005020483)	TOX (ENSCDRG00005020469)	NSMAF (ENSCDRG00005020419) #8	SDCBP (ENSCDRG00005020366) #9	CYP7A1 (ENSCDRG00005020352) #11	UBXN2B (ENSCDRG00005020346) #12	FAM110B (ENSCDRG00005020341) #13	ENSCDRG00005020337 #15	PENK (ENSCDRG00005020332) #16	ENSCDRG00005020328	SDR16C5 (ENSCDRG00005020318) #17	CHCHD7 (ENSCDRG00005020260) #19	PLAG1 (ENSCDRG00005020252) #20	MOS (ENSCDRG00005020244) #21	RPS20 (ENSCDRG00005020230) #22	LYN (ENSCDRG00005020208) #24	TGS1 (ENSCDRG00005020178) #25	TMEM68 (ENSCDRG00005020157) #26	ENSCDRG00005020056 #27	SOX17 (ENSCDRG00005020040)	MRPL15 (ENSCDRG00005020012) #29	LYPLA1 (ENSCDRG00005019997) #30	TCEA1 (ENSCDRG00005019946) #31	ENSCDRG00005019928 #32	ATP6V1H (ENSCDRG00005019870) #33	OPRK1 (ENSCDRG00005019845) #34	NPBWR1 (ENSCDRG00005019836) #35	ALKAL1 (ENSCDRG00005019754) #37	ST18 (ENSCDRG00005019658)	PCMTD1 (ENSCDRG00005019634)
Artiodactyla_b	ANCESTRAL SPECIES	20	ENSGT00940000158863	ENSGT00940000159497	ENSGT00940000155059 #8	ENSGT00940000154502 #9	ENSGT00940000153141.B.a #11	ENSGT00520000055567.a.a.b #12	ENSGT00950000183056.B.b #13	ENSGT00840000130804 #14	ENSGT00940000160216 #15	ENSGT00950000183149.A #16	ENSGT00940000163618	ENSGT00940000156731 #17	ENSGT00390000001029 #19	ENSGT00940000159246 #20	ENSGT00940000160233 #21	ENSGT00390000003248.a.a.a.b #22	ENSGT00940000158011 #24	ENSGT00390000018056 #25	ENSGT00390000011782 #26	ENSGT01070000253766.A.b	ENSGT00940000154242.b #27	ENSGT00940000156694	ENSGT00390000009040 #29	ENSGT00940000154185 #30	ENSGT00940000155121 #31	ENSGT00940000159123 #32	ENSGT00390000003289 #33	ENSGT00940000157341 #34	ENSGT00940000161936 #35	ENSGT00390000015871 #36	ENSGT00940000159969.a #37
Pecora	DUPLICATION
Pecora	DUPLICATION
Pecora	ANCESTRAL SPECIES																	ENSGT00390000003248.a.a.a.b.t.a #22
Percora_a	ANCESTRAL SPECIES																	ENSGT00390000003248.a.a.a.b.t.a #22
Bovidae	ANCESTRAL SPECIES																	ENSGT00390000003248.a.a.a.b.t.a #22
Bovinae	DUPLICATION
Bovinae	ANCESTRAL SPECIES																	ENSGT00390000003248.a.a.a.b.t.a.a #22
Bos	ANCESTRAL SPECIES	13	ENSGT00950000182878.b.a.c.a.a.b.p.b.b.b	ENSGT00940000157417	ENSGT00940000158243	ENSGT00940000161472	ENSGT00390000017666	ENSGT00940000161067	ENSGT00940000162712	ENSGT00940000161933.e	ENSGT00940000161933.f	ENSGT00520000055955	ENSGT00830000128402	ENSGT00940000157547	ENSGT00390000018436.a.a	ENSGT00950000182808.a.a.b.a	ENSGT00940000158275	ENSGT00390000003248.a.a.a.b.t.a.a #22	ENSGT00940000157120	ENSGT00740000115643	ENSGT00950000183017.a	ENSGT00390000010094.a	ENSGT00390000003316.d.g.a.a	ENSGT00940000158846	ENSGT00390000014318	ENSGT00950000182900.A.b	ENSGT00940000155548	ENSGT00940000155076.a	ENSGT00940000160169	ENSGT00920000149143	ENSGT00940000161505	ENSGT00940000158191	ENSGT00950000183192.a.a
Bos_b	ANCESTRAL SPECIES	11	ENSGT00940000155944	ENSGT00940000157417	ENSGT00940000158243	ENSGT00940000161472	ENSGT00390000017666	ENSGT00940000161067	ENSGT00940000162712	ENSGT00940000161933.e	ENSGT00940000161933.f	ENSGT00520000055955	ENSGT00830000128402	ENSGT00940000157547	ENSGT00390000018436.a.a	ENSGT00950000182808.a.a.b.a	ENSGT00940000158275	ENSGT00390000003248.a.a.a.b.t.a.a #22	ENSGT00940000157120	ENSGT00740000115643	ENSGT00950000183017.a	ENSGT00390000010094.a	ENSGT00390000003316.d.g.a.a.b	ENSGT00940000158846	ENSGT00390000014318	ENSGT00950000182900.A.b	ENSGT00940000155548	ENSGT00940000155076.a	ENSGT00940000160169	ENSGT00920000149143	ENSGT00940000161505	ENSGT00940000158191	ENSGT00950000183192.a.a
Hybrid Bos Indicus	MODERN SPECIES	1	SIPA1L1 (ENSBIXG00005028352)	PCNX1 (ENSBIXG00005002329)	MAP3K9 (ENSBIXG00005005038)	TTC9 (ENSBIXG00005028903)	ENSBIXG00005028916	MED6 (ENSBIXG00005005085)	ADAM21 (ENSBIXG00005028972)	ENSBIXG00005028980	ENSBIXG00005002066	COX16 (ENSBIXG00005005118)	SYNJ2BP (ENSBIXG00005029040)	SLC8A3 (ENSBIXG00005029096)	SMOC1 (ENSBIXG00005001873)	SLC10A1 (ENSBIXG00005005187)	SRSF5 (ENSBIXG00005001782)	ENSBIXG00005001752 #22	SUSD6 (ENSBIXG00005001703)	CCDC177 (ENSBIXG00005001674)	PLEKHD1 (ENSBIXG00005001643)	SLC39A9 (ENSBIXG00005029879)	ENSBIXG00005029870	GALNT16 (ENSBIXG00005029858)	EXD2 (ENSBIXG00005029803)	DCAF5 (ENSBIXG00005029780)	ACTN1 (ENSBIXG00005029682)	ZFP36L1 (ENSBIXG00005029639)	ENSBIXG00005029630	RAD51B (ENSBIXG00005029614)	ZFYVE26 (ENSBIXG00005029551)	RDH12 (ENSBIXG00005029526)	RDH11 (ENSBIXG00005029495)
Cow	MODERN SPECIES	1	PCNX1 (ENSBTAG00000012565)	MAP3K9 (ENSBTAG00000005700)	TTC9 (ENSBTAG00000045604)	ENSBTAG00000052827	ADAM20 (ENSBTAG00000038377)	MED6 (ENSBTAG00000006786)	ADAM21 (ENSBTAG00000003715)	ENSBTAG00000037932	ENSBTAG00000054288	COX16 (ENSBTAG00000030595)	SYNJ2BP (ENSBTAG00000007586)	SLC8A3 (ENSBTAG00000027080)	SMOC1 (ENSBTAG00000030599)	SLC10A1 (ENSBTAG00000001881)	SRSF5 (ENSBTAG00000011596)	ENSBTAG00000050645 #22	SUSD6 (ENSBTAG00000003857)	CCDC177 (ENSBTAG00000047101)	PLEKHD1 (ENSBTAG00000008576)	SLC39A9 (ENSBTAG00000017811)	ERH (ENSBTAG00000017798)	GALNT16 (ENSBTAG00000009998)	EXD2 (ENSBTAG00000010052)	DCAF5 (ENSBTAG00000048519)	ACTN1 (ENSBTAG00000018255)	ZFP36L1 (ENSBTAG00000025434)	RAD51B (ENSBTAG00000018971)	ZFYVE26 (ENSBTAG00000014334)	RDH12 (ENSBTAG00000012838)	RDH11 (ENSBTAG00000001950)	VTI1B (ENSBTAG00000001948)
Bos_a	ANCESTRAL SPECIES	1	ENSGT00950000182878.b.a.c.a.a.b.p.b.b.b	ENSGT00940000157417	ENSGT00940000158243	ENSGT00940000161472	ENSGT00390000017666	ENSGT00940000161067	ENSGT00940000162712	ENSGT00940000161933.e	ENSGT00940000161933.f	ENSGT00520000055955	ENSGT00830000128402	ENSGT00940000157547	ENSGT00390000018436.a.a	ENSGT00950000182808.a.a.b.a	ENSGT00940000158275	ENSGT00390000003248.a.a.a.b.t.a.a #22	ENSGT00940000157120	ENSGT00740000115643	ENSGT00950000183017.a	ENSGT00390000010094.a	ENSGT00390000003316.d.g.a.a	ENSGT00940000158846	ENSGT00390000014318	ENSGT00950000182900.A.b	ENSGT00940000155548	ENSGT00940000155076.a	ENSGT00940000160169	ENSGT00920000149143	ENSGT00940000161505	ENSGT00940000158191	ENSGT00950000183192.a.a
Domestic yak	MODERN SPECIES	2	SIPA1L1 (ENSBGRG00000010469)	ENSBGRG00000010436	PCNX1 (ENSBGRG00000009684)	MAP3K9 (ENSBGRG00000009390)	TTC9 (ENSBGRG00000009323)	MED6 (ENSBGRG00000008994)	ADAM21 (ENSBGRG00000008955)	ENSBGRG00000008921	ENSBGRG00000008867	COX16 (ENSBGRG00000008784)	SYNJ2BP (ENSBGRG00000008751)	SLC8A3 (ENSBGRG00000008321)	SMOC1 (ENSBGRG00000007997)	SLC10A1 (ENSBGRG00000007947)	SRSF5 (ENSBGRG00000007863)	ENSBGRG00000007840 #22	SUSD6 (ENSBGRG00000007738)	CCDC177 (ENSBGRG00000007718)	PLEKHD1 (ENSBGRG00000007631)	SLC39A9 (ENSBGRG00000007464)	ENSBGRG00000007387	GALNT16 (ENSBGRG00000007271)	EXD2 (ENSBGRG00000007112)	DCAF5 (ENSBGRG00000007044)	ACTN1 (ENSBGRG00000006595)	ZFP36L1 (ENSBGRG00000006544)	RAD51B (ENSBGRG00000006291)	ZFYVE26 (ENSBGRG00000006154)	RDH12 (ENSBGRG00000006048)	RDH11 (ENSBGRG00000005960)	VTI1B (ENSBGRG00000005918)
American bison	MODERN SPECIES	3156	TTC9 (ENSBBBG00000024964)	ENSBBBG00000024958	MED6 (ENSBBBG00000007826)	ENSBBBG00000024889	ADAM20 (ENSBBBG00000024877)	ADAM21 (ENSBBBG00000024843)	ENSBBBG00000006817	ENSBBBG00000008045	COX16 (ENSBBBG00000006522)	SYNJ2BP (ENSBBBG00000024709)	SLC8A3 (ENSBBBG00000024696)	SMOC1 (ENSBBBG00000006424)	SLC10A1 (ENSBBBG00000009026)	SRSF5 (ENSBBBG00000024564)	SUSD6 (ENSBBBG00000008034)	ENSBBBG00000024477 #22	PLEKHD1 (ENSBBBG00000024457)	SLC39A9 (ENSBBBG00000009006)	ENSBBBG00000024305	GALNT16 (ENSBBBG00000024287)	EXD2 (ENSBBBG00000024244)	DCAF5 (ENSBBBG00000024180)	ACTN1 (ENSBBBG00000008979)	RAD51B (ENSBBBG00000006221)	ZFYVE26 (ENSBBBG00000008688)	RDH12 (ENSBBBG00000006192)	RDH11 (ENSBBBG00000023755)	VTI1B (ENSBBBG00000006185)	ARG2 (ENSBBBG00000023706)	ENSBBBG00000023690	PIGH (ENSBBBG00000023681)
Bovinae	ANCESTRAL SPECIES																	ENSGT00390000003248.a.a.a.b.t.a.b #22
American bison	MODERN SPECIES	3059												ENSBBBG00000017478	OTOL1 (ENSBBBG00000017470)	ENSBBBG00000017464	SPTSSB (ENSBBBG00000017462)	ENSBBBG00000017451 #22	NMD3 (ENSBBBG00000017439)	PPM1L (ENSBBBG00000017357)	ARL14 (ENSBBBG00000004289)	KPNA4 (ENSBBBG00000007462)	TRIM59 (ENSBBBG00000004283)	SMC4 (ENSBBBG00000017274)	IFT80 (ENSBBBG00000017101)	C3orf80 (ENSBBBG00000004213)	IL12A (ENSBBBG00000017024)	SCHIP1 (ENSBBBG00000017002)	IQCJ (ENSBBBG00000006892)	ENSBBBG00000016927	MFSD1 (ENSBBBG00000016915)	RARRES1 (ENSBBBG00000007038)	GFM1 (ENSBBBG00000016884)
Siberian musk deer	MODERN SPECIES	181	CA8 (ENSMMSG00000017738)	ENSMMSG00000017777	TOX (ENSMMSG00000017819)	NSMAF (ENSMMSG00000017867) #8	ENSMMSG00000018010 #9	CYP7A1 (ENSMMSG00000018193) #11	UBXN2B (ENSMMSG00000018228) #12	FAM110B (ENSMMSG00000018255) #13	BPNT2 (ENSMMSG00000018264) #15	PENK (ENSMMSG00000018295) #16	ENSMMSG00000018326	SDR16C5 (ENSMMSG00000018350) #17	CHCHD7 (ENSMMSG00000018418) #19	PLAG1 (ENSMMSG00000018496) #20	MOS (ENSMMSG00000018521) #21	ENSMMSG00000018541 #22	LYN (ENSMMSG00000018689) #24	TGS1 (ENSMMSG00000018818) #25	TMEM68 (ENSMMSG00000018879) #26	XKR4 (ENSMMSG00000018988)	ENSMMSG00000019022 #27	SOX17 (ENSMMSG00000019055)	ENSMMSG00000019067 #29	LYPLA1 (ENSMMSG00000019125) #30	TCEA1 (ENSMMSG00000019249) #31	RGS20 (ENSMMSG00000019413) #32	ATP6V1H (ENSMMSG00000019499) #33	OPRK1 (ENSMMSG00000019585) #34	ENSMMSG00000019617	NPBWR1 (ENSMMSG00000019656) #35	RB1CC1 (ENSMMSG00000019672) #36
Pecora	ANCESTRAL SPECIES																	ENSGT00390000003248.a.a.a.b.t.b #22
Yarkand deer	MODERN SPECIES		B3GNT6 (ENSCHYG00000005731)	CAPN5 (ENSCHYG00000005742)	MYO7A (ENSCHYG00000005782)	ENSCHYG00000005884	ENSCHYG00000006051	ANO3 (ENSCHYG00000006109)	MUC15 (ENSCHYG00000006418)	SLC5A12 (ENSCHYG00000006464)	ENSCHYG00000006539	FIBIN (ENSCHYG00000006554)	BBOX1 (ENSCHYG00000006577)	CCDC34 (ENSCHYG00000006637)	LGR4 (ENSCHYG00000006707)	LIN7C (ENSCHYG00000006875)	BDNF (ENSCHYG00000006918)	ENSCHYG00000006950 #22	KIF18A (ENSCHYG00000006968)	METTL15 (ENSCHYG00000007039)	ENSCHYG00000007105	ENSCHYG00000007126	KCNA4 (ENSCHYG00000007143)	ENSCHYG00000007152	ENSCHYG00000007179	ENSCHYG00000007199	ARL14EP (ENSCHYG00000007219)	MPPED2 (ENSCHYG00000007271)	DCDC1 (ENSCHYG00000007355)	DNAJC24 (ENSCHYG00000007483)	IMMP1L (ENSCHYG00000007517)	ELP4 (ENSCHYG00000007588)	PAX6 (ENSCHYG00000007997)
Percora_a	ANCESTRAL SPECIES																	ENSGT00390000003248.a.a.a.b.t.b #22
Bovidae	ANCESTRAL SPECIES																	ENSGT00390000003248.a.a.a.b.t.b #22
Caprinae	ANCESTRAL SPECIES																	ENSGT00390000003248.a.a.a.b.t.b #22
Goat	MODERN SPECIES	5	CA8 (ENSCHIG00000019407)	TOX (ENSCHIG00000024631)	NSMAF (ENSCHIG00000015908) #8	SDCBP (ENSCHIG00000017671) #9	CYP7A1 (ENSCHIG00000012643) #11	UBXN2B (ENSCHIG00000016275) #12	FAM110B (ENSCHIG00000025189) #13	BPNT2 (ENSCHIG00000012443) #15	ENSCHIG00000013126	PENK (ENSCHIG00000023682) #16	ENSCHIG00000024910	SDR16C5 (ENSCHIG00000020829) #17	CHCHD7 (ENSCHIG00000013735) #19	PLAG1 (ENSCHIG00000000623) #20	MOS (ENSCHIG00000011697) #21	RPS20 (ENSCHIG00000017184) #22	LYN (ENSCHIG00000022450) #24	TGS1 (ENSCHIG00000013976) #25	TMEM68 (ENSCHIG00000023378) #26	XKR4 (ENSCHIG00000012863)	RP1 (ENSCHIG00000024939) #27	SOX17 (ENSCHIG00000020928)	ENSCHIG00000000811 #29	ENSCHIG00000009109 #30	ENSCHIG00000022556 #31	RGS20 (ENSCHIG00000006425) #32	ATP6V1H (ENSCHIG00000016415) #33	OPRK1 (ENSCHIG00000023230) #34	NPBWR1 (ENSCHIG00000010898) #35	RB1CC1 (ENSCHIG00000017614) #36	ENSCHIG00000027047 #37
Bovinae	ANCESTRAL SPECIES																	ENSGT00390000003248.a.a.a.b.t.b #22
Bos	ANCESTRAL SPECIES																	ENSGT00390000003248.a.a.a.b.t.b #22
Bos_b	ANCESTRAL SPECIES																	ENSGT00390000003248.a.a.a.b.t.b #22
Hybrid Bos Indicus	MODERN SPECIES	5	ENSBIXG00005022654	UBXN2B (ENSBIXG00005022720) #12	ENSBIXG00005022753	ENSBIXG00005022760	FAM110B (ENSBIXG00005003896) #13	ENSBIXG00005022797	BPNT2 (ENSBIXG00005003904) #15	ENSBIXG00005022851	PENK (ENSBIXG00005022883) #16	ENSBIXG00005022898	SDR16C5 (ENSBIXG00005003919) #17	ENSBIXG00005023000	ENSBIXG00005023097	PLAG1 (ENSBIXG00005023155) #20	MOS (ENSBIXG00005007074) #21	ENSBIXG00005003964 #22	LYN (ENSBIXG00005023239) #24	TGS1 (ENSBIXG00005023257) #25	TMEM68 (ENSBIXG00005023366) #26	XKR4 (ENSBIXG00005023413)	RP1 (ENSBIXG00005023448) #27	SOX17 (ENSBIXG00005023546)	ENSBIXG00005023590 #29	ENSBIXG00005004065 #30	TCEA1 (ENSBIXG00005023901) #31	RGS20 (ENSBIXG00005004106) #32	ENSBIXG00005023996	ENSBIXG00005004122 #33	ENSBIXG00005024120	OPRK1 (ENSBIXG00005024194) #34	NPBWR1 (ENSBIXG00005024209) #35
Siberian musk deer	MODERN SPECIES	279		NSUN3 (ENSMMSG00000004538)	ARL13B (ENSMMSG00000004620)	STX19 (ENSMMSG00000004737)	PROS1 (ENSMMSG00000004821)	EPHA3 (ENSMMSG00000005101)	ENSMMSG00000005161	CSNKA2IP (ENSMMSG00000005187)	C3orf38 (ENSMMSG00000005242)	ZNF654 (ENSMMSG00000005277)	CGGBP1 (ENSMMSG00000005329)	POU1F1 (ENSMMSG00000005357)	CHMP2B (ENSMMSG00000005505)	VGLL3 (ENSMMSG00000005580)	CADM2 (ENSMMSG00000005641)	ENSMMSG00000005800 #22	ENSMMSG00000005849	ENSMMSG00000005872
Pecora	ANCESTRAL SPECIES	20	ENSGT00940000158863	ENSGT00940000159497	ENSGT00940000155059 #8	ENSGT00940000154502.o.a #9	ENSGT00940000153141.B.a #11	ENSGT00520000055567.a.a.b #12	ENSGT00950000183056.B.b #13	ENSGT00840000130804 #14	ENSGT00940000160216 #15	ENSGT00950000183149.A #16	ENSGT00940000163618	ENSGT00940000156731 #17	ENSGT00390000001029 #19	ENSGT00940000159246 #20	ENSGT00940000160233 #21	ENSGT00390000003248.a.a.a.b.u #22	ENSGT00940000158011 #24	ENSGT00390000018056 #25	ENSGT00390000011782 #26	ENSGT01070000253766.A.b	ENSGT00940000154242.b #27	ENSGT00940000156694	ENSGT00390000009040.a #29	ENSGT00940000154185 #30	ENSGT00940000155121 #31	ENSGT00940000159123 #32	ENSGT00390000003289 #33	ENSGT00940000157341 #34	ENSGT00940000161936 #35	ENSGT00390000015871 #36	ENSGT00940000159969.a #37
Yarkand deer	MODERN SPECIES	13	CA8 (ENSCHYG00000025104)	TOX (ENSCHYG00000025044)	NSMAF (ENSCHYG00000024822) #8	SDCBP (ENSCHYG00000024674) #9	CYP7A1 (ENSCHYG00000024626) #11	UBXN2B (ENSCHYG00000024580) #12	FAM110B (ENSCHYG00000024557) #13	ENSCHYG00000024542	ENSCHYG00000024535	BPNT2 (ENSCHYG00000024500) #15	PENK (ENSCHYG00000024468) #16	ENSCHYG00000024371	CHCHD7 (ENSCHYG00000024223) #19	PLAG1 (ENSCHYG00000024189) #20	MOS (ENSCHYG00000024173) #21	RPS20 (ENSCHYG00000024102) #22	LYN (ENSCHYG00000023984) #24	TGS1 (ENSCHYG00000023932) #25	TMEM68 (ENSCHYG00000023790) #26	XKR4 (ENSCHYG00000023732)	ENSCHYG00000023702 #27	SOX17 (ENSCHYG00000023663)	MRPL15 (ENSCHYG00000023624) #29	LYPLA1 (ENSCHYG00000023356) #30	ENSCHYG00000022967 #31	RGS20 (ENSCHYG00000022852) #32	ATP6V1H (ENSCHYG00000022766) #33	OPRK1 (ENSCHYG00000022698) #34	NPBWR1 (ENSCHYG00000022686) #35	RB1CC1 (ENSCHYG00000022542) #36	ALKAL1 (ENSCHYG00000022488) #37
Percora_a	ANCESTRAL SPECIES	23	ENSGT00940000158863	ENSGT00940000159497	ENSGT00940000155059 #8	ENSGT00940000154502.o.a #9	ENSGT00940000153141.B.a #11	ENSGT00520000055567.a.a.b #12	ENSGT00950000183056.B.b #13	ENSGT00840000130804 #14	ENSGT00940000160216 #15	ENSGT00950000183149.A #16	ENSGT00940000163618	ENSGT00940000156731 #17	ENSGT00390000001029 #19	ENSGT00940000159246 #20	ENSGT00940000160233 #21	ENSGT00390000003248.a.a.a.b.u #22	ENSGT00940000158011 #24	ENSGT00390000018056 #25	ENSGT00390000011782 #26	ENSGT01070000253766.A.b	ENSGT00940000154242.b #27	ENSGT00940000156694	ENSGT00390000009040.a #29	ENSGT00940000154185.f #30	ENSGT00940000155121 #31	ENSGT00940000159123 #32	ENSGT00390000003289 #33	ENSGT00940000157341 #34	ENSGT00940000161936 #35	ENSGT00390000015871 #36	ENSGT00940000159969.a #37
Siberian musk deer	MODERN SPECIES	49	ENSMMSG00000000065	ENSMMSG00000000077	ENSMMSG00000000087	PGBD2 (ENSMMSG00000000103)	ZNF692 (ENSMMSG00000000125)	ENSMMSG00000000154	SH3BP5L (ENSMMSG00000000169)	ENSMMSG00000000198	ENSMMSG00000000214	ENSMMSG00000000224	ENSMMSG00000000240	ENSMMSG00000000251	OR2T11 (ENSMMSG00000000272)	ENSMMSG00000000309	ENSMMSG00000000319	ENSMMSG00000000326 #22	OR2G6 (ENSMMSG00000000350)	ENSMMSG00000000357	OR2T27 (ENSMMSG00000000365)	OR2T1 (ENSMMSG00000000377)	OR2T6 (ENSMMSG00000000386)	ENSMMSG00000000394	ENSMMSG00000000400	ENSMMSG00000000425	ENSMMSG00000000438	ENSMMSG00000000448	ENSMMSG00000000461	ENSMMSG00000000475	ENSMMSG00000000487	ENSMMSG00000000497	ENSMMSG00000000509
Bovidae	ANCESTRAL SPECIES	22	ENSGT00940000158863	ENSGT00940000159497	ENSGT00940000155059 #8	ENSGT00940000154502.o.a #9	ENSGT00940000153141.B.a #11	ENSGT00520000055567.a.a.b #12	ENSGT00950000183056.B.b #13	ENSGT00840000130804 #14	ENSGT00940000160216 #15	ENSGT00950000183149.A #16	ENSGT00940000163618	ENSGT00940000156731 #17	ENSGT00390000001029 #19	ENSGT00940000159246 #20	ENSGT00940000160233 #21	ENSGT00390000003248.a.a.a.b.u #22	ENSGT00940000158011 #24	ENSGT00390000018056 #25	ENSGT00390000011782 #26	ENSGT01070000253766.A.b	ENSGT00940000154242.b #27	ENSGT00940000156694	ENSGT00390000009040.a #29	ENSGT00940000154185.f #30	ENSGT00940000155121 #31	ENSGT00940000159123 #32	ENSGT00390000003289 #33	ENSGT00940000157341 #34	ENSGT00940000161936 #35	ENSGT00390000015871 #36	ENSGT00940000159969.a #37
Caprinae	ANCESTRAL SPECIES	18	ENSGT00940000153886.a.b	ENSGT00940000158863	ENSGT00940000159497	ENSGT00940000155059 #8	ENSGT00940000154502.o.a #9	ENSGT00940000153141.B.a #11	ENSGT00520000055567.a.a.b #12	ENSGT00950000183056.B.b #13	ENSGT00940000160216 #15	ENSGT00950000183149.A #16	ENSGT00940000163618	ENSGT00940000156731 #17	ENSGT00390000001029 #19	ENSGT00940000159246 #20	ENSGT00940000160233 #21	ENSGT00390000003248.a.a.a.b.u #22	ENSGT00940000158011 #24	ENSGT00390000018056 #25	ENSGT00390000011782 #26	ENSGT01070000253766.A.b	ENSGT00940000154242.b #27	ENSGT00940000156694	ENSGT00390000009040.a #29	ENSGT00940000154185.f #30	ENSGT00940000155121 #31	ENSGT00940000159123 #32	ENSGT00390000003289 #33	ENSGT00940000157341 #34	ENSGT00940000161936 #35	ENSGT00390000015871 #36	ENSGT00940000159969.a #37
Rambouillet Sheep	MODERN SPECIES	25	CHD7 (ENSOARG00020025706)	RAB2A (ENSOARG00020025690)	CA8 (ENSOARG00020025684)	TOX (ENSOARG00020025664)	SDCBP (ENSOARG00020025628) #9	CYP7A1 (ENSOARG00020025602) #11	UBXN2B (ENSOARG00020025589) #12	FAM110B (ENSOARG00020025582) #13	BPNT2 (ENSOARG00020025578) #15	PENK (ENSOARG00020025573) #16	ENSOARG00020025564	SDR16C5 (ENSOARG00020025547) #17	CHCHD7 (ENSOARG00020025533) #19	PLAG1 (ENSOARG00020025527) #20	MOS (ENSOARG00020025525) #21	RPS20 (ENSOARG00020025515) #22	LYN (ENSOARG00020025503) #24	TMEM68 (ENSOARG00020025479) #26	XKR4 (ENSOARG00020025470)	RP1 (ENSOARG00020025463) #27	SOX17 (ENSOARG00020025457)	MRPL15 (ENSOARG00020025448) #29	LYPLA1 (ENSOARG00020025402) #30	TCEA1 (ENSOARG00020025361) #31	RGS20 (ENSOARG00020025341) #32	ATP6V1H (ENSOARG00020025312) #33	OPRK1 (ENSOARG00020025297) #34	NPBWR1 (ENSOARG00020025293) #35	RB1CC1 (ENSOARG00020025223) #36	ALKAL1 (ENSOARG00020025195) #37	ENSOARG00020025180
Bovinae	ANCESTRAL SPECIES	18	ENSGT00940000158863	ENSGT00940000159497	ENSGT00940000155059 #8	ENSGT00940000154502.o.a #9	ENSGT00940000153141.B.a #11	ENSGT00520000055567.a.a.b #12	ENSGT00950000183056.B.b #13	ENSGT00840000130804 #14	ENSGT00940000160216 #15	ENSGT00950000183149.A #16	ENSGT00940000163618	ENSGT00940000156731 #17	ENSGT00390000001029 #19	ENSGT00940000159246 #20	ENSGT00940000160233 #21	ENSGT00390000003248.a.a.a.b.u #22	ENSGT00940000158011 #24	ENSGT00390000018056 #25	ENSGT00390000011782 #26	ENSGT01070000253766.A.b	ENSGT00940000154242.b #27	ENSGT00940000156694	ENSGT00390000009040.a #29	ENSGT00940000154185.f.a #30	ENSGT00940000155121 #31	ENSGT00940000159123 #32	ENSGT00390000010130.f	ENSGT00390000003289.g.a #33	ENSGT00940000157341 #34	ENSGT00940000161936 #35	ENSGT00390000015871 #36
American bison	MODERN SPECIES	3036	RAB2A (ENSBBBG00000017073)	CA8 (ENSBBBG00000017090)	TOX (ENSBBBG00000017129)	NSMAF (ENSBBBG00000004247) #8	ENSBBBG00000017283 #9	CYP7A1 (ENSBBBG00000008342) #11	UBXN2B (ENSBBBG00000017321) #12	ENSBBBG00000007573 #14	BPNT2 (ENSBBBG00000017338) #15	PENK (ENSBBBG00000017347) #16	ENSBBBG00000017363	SDR16C5 (ENSBBBG00000017391) #17	CHCHD7 (ENSBBBG00000017425) #19	PLAG1 (ENSBBBG00000017437) #20	MOS (ENSBBBG00000004319) #21	RPS20 (ENSBBBG00000017472) #22	LYN (ENSBBBG00000017506) #24	TGS1 (ENSBBBG00000017523) #25	TMEM68 (ENSBBBG00000017572) #26	XKR4 (ENSBBBG00000004357)	RP1 (ENSBBBG00000008007) #27	ENSBBBG00000017605 #29	ENSBBBG00000008932 #30	TCEA1 (ENSBBBG00000004377) #31	RGS20 (ENSBBBG00000017756) #32	ENSBBBG00000006782	ENSBBBG00000004389 #33	OPRK1 (ENSBBBG00000017852) #34	NPBWR1 (ENSBBBG00000017860) #35	RB1CC1 (ENSBBBG00000017917) #36	ALKAL1 (ENSBBBG00000004408) #37
Bos	ANCESTRAL SPECIES	21	ENSGT00940000159497	ENSGT00940000155059 #8	ENSGT00940000154502.o.a #9	ENSGT00940000153141.B.a #11	ENSGT00520000055567.a.a.b #12	ENSGT00950000183056.B.b #13	ENSGT00840000130804 #14	ENSGT00940000160216 #15	ENSGT00950000183149.A #16	ENSGT00940000163618	ENSGT00940000156731 #17	ENSGT00970000194954	ENSGT00390000001029 #19	ENSGT00940000159246 #20	ENSGT00940000160233 #21	ENSGT00390000003248.a.a.a.b.u #22	ENSGT00940000158011 #24	ENSGT00390000018056 #25	ENSGT00390000011782 #26	ENSGT01070000253766.A.b	ENSGT00940000154242.b #27	ENSGT00940000156694	ENSGT00390000009040.a #29	ENSGT00940000154185.f.a #30	ENSGT00940000155121 #31	ENSGT00940000159123 #32	ENSGT00390000010130.f	ENSGT00390000003289.g.a #33	ENSGT00940000157341 #34	ENSGT00940000161936 #35	ENSGT00390000015871 #36
Bos_b	ANCESTRAL SPECIES	25	ENSGT00940000158863	ENSGT00940000159497	ENSGT00940000155059 #8	ENSGT00940000154502.o.a #9	ENSGT00940000153141.B.a #11	ENSGT00520000055567.a.a.b #12	ENSGT00950000183056.B.b #13	ENSGT00940000160216 #15	ENSGT00950000183149.A #16	ENSGT00940000163618	ENSGT00940000156731 #17	ENSGT00970000194954	ENSGT00390000001029 #19	ENSGT00940000159246 #20	ENSGT00940000160233 #21	ENSGT00390000003248.a.a.a.b.u #22	ENSGT00940000158011 #24	ENSGT00390000018056 #25	ENSGT00390000011782 #26	ENSGT01070000253766.A.b	ENSGT00940000154242.b #27	ENSGT00940000156694	ENSGT00390000009040.a #29	ENSGT00940000154185.f.a #30	ENSGT00940000155121 #31	ENSGT00940000159123 #32	ENSGT00390000010130.f	ENSGT00390000003289.g.a #33	ENSGT00940000157341 #34	ENSGT00940000161936 #35	ENSGT00390000015871 #36
Cow	DUPLICATION
Cow	MODERN SPECIES	24	HELB (ENSBTAG00000020806)	GRIP1 (ENSBTAG00000033726)	CAND1 (ENSBTAG00000009939)	DYRK2 (ENSBTAG00000007256)	IFNG (ENSBTAG00000012529)	IL26 (ENSBTAG00000052655)	ENSBTAG00000015395	IL22 (ENSBTAG00000015407)	MDM1 (ENSBTAG00000019738)	RAP1B (ENSBTAG00000008967)	NUP107 (ENSBTAG00000006911)	SLC35E3 (ENSBTAG00000031919)	ENSBTAG00000051975	MDM2 (ENSBTAG00000010422)	CPM (ENSBTAG00000013496)	ENSBTAG00000002741 #22	CPSF6 (ENSBTAG00000007323)	LYZ (ENSBTAG00000026779)	ENSBTAG00000026322	LYZ3 (ENSBTAG00000046628)	LYZ1 (ENSBTAG00000046511)	LYZ2 (ENSBTAG00000026088)	LYSB (ENSBTAG00000026323)	ENSBTAG00000039170	ENSBTAG00000000198	ENSBTAG00000054492	ENSBTAG00000020564	ENSBTAG00000049929	ENSBTAG00000022971	LYZ1 (ENSBTAG00000011941)	YEATS4 (ENSBTAG00000002256)
Cow	MODERN SPECIES	5	TOX (ENSBTAG00000004954)	NSMAF (ENSBTAG00000008958) #8	SDCBP (ENSBTAG00000019910) #9	CYP7A1 (ENSBTAG00000005287) #11	UBXN2B (ENSBTAG00000009138) #12	ENSBTAG00000047136	FAM110B (ENSBTAG00000050550) #13	BPNT2 (ENSBTAG00000015637) #15	PENK (ENSBTAG00000004924) #16	SDR16C6 (ENSBTAG00000040321)	SDR16C5 (ENSBTAG00000018570) #17	ENSBTAG00000054153	CHCHD7 (ENSBTAG00000049910) #19	PLAG1 (ENSBTAG00000004022) #20	MOS (ENSBTAG00000019145) #21	RPS20 (ENSBTAG00000019147) #22	LYN (ENSBTAG00000020034) #24	TGS1 (ENSBTAG00000005898) #25	TMEM68 (ENSBTAG00000005893) #26	XKR4 (ENSBTAG00000044050)	RP1 (ENSBTAG00000011203) #27	SOX17 (ENSBTAG00000005748)	ENSBTAG00000052277	MRPL15 (ENSBTAG00000001174) #29	LYPLA1 (ENSBTAG00000004243) #30	TCEA1 (ENSBTAG00000003460) #31	RGS20 (ENSBTAG00000003454) #32	ENSBTAG00000054835	ATP6V1H (ENSBTAG00000003450) #33	OPRK1 (ENSBTAG00000000914) #34	NPBWR1 (ENSBTAG00000016159) #35
Bos_a	ANCESTRAL SPECIES	95	ENSGT00940000159497	ENSGT00940000155059 #8	ENSGT00940000154502.o.a #9	ENSGT00940000153141.B.a #11	ENSGT00520000055567.a.a.b #12	ENSGT00950000183056.B.b #13	ENSGT00840000130804 #14	ENSGT00940000160216 #15	ENSGT00950000183149.A #16	ENSGT00940000163618	ENSGT00940000156731 #17	ENSGT00970000194954	ENSGT00390000001029 #19	ENSGT00940000159246 #20	ENSGT00940000160233 #21	ENSGT00390000003248.a.a.a.b.u #22	ENSGT00940000158011 #24	ENSGT00390000018056 #25	ENSGT00390000011782 #26	ENSGT01070000253766.A.b
Domestic yak	MODERN SPECIES	24	ENSBGRG00000020011	ENSBGRG00000020063	CAND1 (ENSBGRG00000020115)	DYRK2 (ENSBGRG00000020516)	ENSBGRG00000020554	ENSBGRG00000020561	IFNG (ENSBGRG00000020571)	IL26 (ENSBGRG00000020605)	IL22 (ENSBGRG00000020656)	MDM1 (ENSBGRG00000020724)	RAP1B (ENSBGRG00000021221)	NUP107 (ENSBGRG00000021761)	ENSBGRG00000022075	MDM2 (ENSBGRG00000022145)	CPM (ENSBGRG00000022902)	ENSBGRG00000022992 #22	CPSF6 (ENSBGRG00000023026)	ENSBGRG00000023194	ENSBGRG00000023254	ENSBGRG00000023317	ENSBGRG00000023368	ENSBGRG00000023386	ENSBGRG00000023408	ENSBGRG00000023471	ENSBGRG00000007422	YEATS4 (ENSBGRG00000007500)	FRS2 (ENSBGRG00000007705)	CCT2 (ENSBGRG00000007901)	LRRC10 (ENSBGRG00000008156)	ENSBGRG00000008385	RAB3IP (ENSBGRG00000008446)
Wild yak	MODERN SPECIES	210	TOX (ENSBMUG00000012126)	NSMAF (ENSBMUG00000012057) #8	ENSBMUG00000011917 #9	CYP7A1 (ENSBMUG00000011852) #11	UBXN2B (ENSBMUG00000011833) #12	ENSBMUG00000011815 #13	ENSBMUG00000011795 #14	BPNT2 (ENSBMUG00000011773) #15	PENK (ENSBMUG00000011752) #16	ENSBMUG00000011743	SDR16C5 (ENSBMUG00000011734) #17	ENSBMUG00000011708	ENSBMUG00000011692 #19	PLAG1 (ENSBMUG00000011659) #20	MOS (ENSBMUG00000011644) #21	RPS20 (ENSBMUG00000011614) #22	LYN (ENSBMUG00000011591) #24	TGS1 (ENSBMUG00000011561) #25	TMEM68 (ENSBMUG00000011514) #26	XKR4 (ENSBMUG00000011415)
Cetacea	ANCESTRAL SPECIES	17	ENSGT00970000193421.C.b.d.a.b	ENSGT00940000159497	ENSGT00940000155059 #8	ENSGT00940000154502 #9	ENSGT00940000153141.B.a #11	ENSGT00520000055567.a.a.b #12	ENSGT00950000183056.B.b #13	ENSGT00840000130804 #14	ENSGT00940000160216 #15	ENSGT00390000009517.n	ENSGT00950000183149.A #16	ENSGT00940000156731 #17	ENSGT00390000001029 #19	ENSGT00940000159246 #20	ENSGT00940000160233 #21	ENSGT00390000003248.a.a.a.b #22	ENSGT00940000158011 #24	ENSGT00390000018056 #25	ENSGT00390000011782 #26	ENSGT01070000253766.A.b	ENSGT00940000154242.b #27	ENSGT00940000156694	ENSGT00390000009040 #29	ENSGT00940000154185.h #30	ENSGT00940000155121 #31	ENSGT00940000159123 #32	ENSGT00390000003289 #33	ENSGT00940000157341 #34	ENSGT00940000161936 #35	ENSGT00390000015871 #36	ENSGT00940000159969.a #37
Blue whale	MODERN SPECIES	9	UGGT2 (ENSBMSG00010019576)	DNAJC3 (ENSBMSG00010019510)	DZIP1 (ENSBMSG00010019461)	CLDN10 (ENSBMSG00010019414)	ABCC4 (ENSBMSG00010019322)	SOX21 (ENSBMSG00010019291)	GPR180 (ENSBMSG00010019260)	TGDS (ENSBMSG00010019226)	DCT (ENSBMSG00010019181)	GPC6 (ENSBMSG00010019116)	GPC5 (ENSBMSG00010018992)	SLITRK5 (ENSBMSG00010018926)	SLITRK6 (ENSBMSG00010018912)	ENSBMSG00010018896	SLITRK1 (ENSBMSG00010018887)	ENSBMSG00010018878 #22	ENSBMSG00010018865	ENSBMSG00010018840	ENSBMSG00010018826	SPRY2 (ENSBMSG00010018812)	ENSBMSG00010018790	NDFIP2 (ENSBMSG00010018773)	RBM26 (ENSBMSG00010018424)	OBI1 (ENSBMSG00010018362)	POU4F1 (ENSBMSG00010018346)	ENSBMSG00010018327	EDNRB (ENSBMSG00010018307)	SLAIN1 (ENSBMSG00010018187)	SCEL (ENSBMSG00010018108)	ENSBMSG00010018068	ENSBMSG00010018045
Odontoceti	ANCESTRAL SPECIES	20	ENSGT00970000193421.C.b.d.a.b	ENSGT00940000159497	ENSGT00940000155059 #8	ENSGT00940000154502 #9	ENSGT00940000153141.B.a #11	ENSGT00520000055567.a.a.b #12	ENSGT00950000183056.B.b #13	ENSGT00840000130804 #14	ENSGT00940000160216 #15	ENSGT00390000009517.n	ENSGT00950000183149.A #16	ENSGT00940000156731 #17	ENSGT00390000001029 #19	ENSGT00940000159246 #20	ENSGT00940000160233 #21	ENSGT00390000003248.a.a.a.b #22	ENSGT00940000158011 #24	ENSGT00390000018056 #25	ENSGT00390000011782 #26	ENSGT01070000253766.A.b	ENSGT00940000154242.b #27	ENSGT00940000156694	ENSGT00390000009040 #29	ENSGT00940000154185.h #30	ENSGT00940000155121.n #31	ENSGT00940000155121.m.b #31	ENSGT00940000159123 #32	ENSGT00390000003289 #33	ENSGT00940000157341 #34	ENSGT00940000161936 #35	ENSGT00390000015871 #36
Odontoceti_a	ANCESTRAL SPECIES	17	ENSGT00940000158863	ENSGT00970000193421.C.b.d.a.b	ENSGT00940000159497	ENSGT00940000155059 #8	ENSGT00940000154502 #9	ENSGT00940000153141.B.a #11	ENSGT00520000055567.a.a.b #12	ENSGT00950000183056.B.b #13	ENSGT00840000130804 #14	ENSGT00940000160216 #15	ENSGT00950000183149.A #16	ENSGT00940000156731 #17	ENSGT00390000001029 #19	ENSGT00940000159246 #20	ENSGT00940000160233 #21	ENSGT00390000003248.a.a.a.b #22	ENSGT00940000158011 #24	ENSGT00390000018056 #25	ENSGT00390000011782 #26	ENSGT01070000253766.A.b	ENSGT00940000154242.b #27	ENSGT00940000156694	ENSGT00390000009040 #29	ENSGT00940000154185.h #30	ENSGT00940000155121.n #31	ENSGT00940000155121.m.a #31	ENSGT00940000159123 #32	ENSGT00390000003289 #33	ENSGT00940000157341 #34	ENSGT00940000161936 #35	ENSGT00390000015871 #36
Dolphin	MODERN SPECIES	957												TMEM126B (ENSTTRG00000016854)	SDR16C5 (ENSTTRG00000016853) #17	CHCHD7 (ENSTTRG00000016852) #19	PLAG1 (ENSTTRG00000016849) #20	RPS20 (ENSTTRG00000016847) #22	LYN (ENSTTRG00000016842) #24
Odontoceti_b	ANCESTRAL SPECIES	19	ENSGT00940000158863	ENSGT00970000193421.C.b.d.a.b	ENSGT00940000159497	ENSGT00940000155059 #8	ENSGT00940000154502.q.a #9	ENSGT00940000153141.B.a #11	ENSGT00520000055567.a.a.b #12	ENSGT00950000183056.B.b #13	ENSGT00840000130804 #14	ENSGT00940000160216 #15	ENSGT00950000183149.A #16	ENSGT00940000156731 #17	ENSGT00390000001029 #19	ENSGT00940000159246 #20	ENSGT00940000160233 #21	ENSGT00390000003248.a.a.a.b #22	ENSGT00940000158011 #24	ENSGT00390000018056 #25	ENSGT00390000011782 #26	ENSGT01070000253766.A.b	ENSGT00940000154242.b #27	ENSGT00940000156694	ENSGT00390000009040 #29	ENSGT00940000154185.h #30	ENSGT00940000155121.m.a #31	ENSGT00940000159123 #32	ENSGT00390000003289 #33	ENSGT00940000157341 #34	ENSGT00940000161936 #35	ENSGT00390000015871 #36	ENSGT00940000159969.a #37
Monodontidae	ANCESTRAL SPECIES	20	ENSGT00940000158863	ENSGT00970000193421.C.b.d.a.b	ENSGT00940000159497	ENSGT00940000155059 #8	ENSGT00940000154502.q.a #9	ENSGT00940000153141.B.a #11	ENSGT00520000055567.a.a.b #12	ENSGT00950000183056.B.b #13	ENSGT00840000130804 #14	ENSGT00940000160216 #15	ENSGT00950000183149.A #16	ENSGT00940000156731 #17	ENSGT00390000001029 #19	ENSGT00940000159246 #20	ENSGT00940000160233 #21	ENSGT00390000003248.a.a.a.b #22	ENSGT00940000158011 #24	ENSGT00390000018056 #25	ENSGT00390000011782 #26	ENSGT01070000253766.A.b	ENSGT00940000154242.b #27	ENSGT00940000156694	ENSGT00390000009040 #29	ENSGT00940000154185.h #30	ENSGT00940000155121.m.a #31	ENSGT00940000159123 #32	ENSGT00390000003289 #33	ENSGT00940000157341 #34	ENSGT00940000161936 #35	ENSGT00390000015871 #36	ENSGT00940000159969.a #37
Beluga whale	MODERN SPECIES	47	CA8 (ENSDLEG00000014524)	ENSDLEG00000014564	TOX (ENSDLEG00000014593)	NSMAF (ENSDLEG00000014647) #8	SDCBP (ENSDLEG00000014840) #9	CYP7A1 (ENSDLEG00000014869) #11	UBXN2B (ENSDLEG00000014883) #12	FAM110B (ENSDLEG00000014904) #13	ENSDLEG00000014911 #14	IMPAD1 (ENSDLEG00000014922) #15	PENK (ENSDLEG00000014942) #16	SDR16C5 (ENSDLEG00000014953) #17	CHCHD7 (ENSDLEG00000014964) #19	PLAG1 (ENSDLEG00000014990) #20	MOS (ENSDLEG00000014999) #21	RPS20 (ENSDLEG00000015007) #22	LYN (ENSDLEG00000015026) #24	TGS1 (ENSDLEG00000015081) #25	TMEM68 (ENSDLEG00000015101) #26	XKR4 (ENSDLEG00000015131)	ENSDLEG00000015141	RP1 (ENSDLEG00000015156) #27	SOX17 (ENSDLEG00000015171)	TPRKB (ENSDLEG00000015177)	MRPL15 (ENSDLEG00000015181) #29	ENSDLEG00000015196 #30	ENSDLEG00000015212 #30	ENSDLEG00000015221 #31	ENSDLEG00000015228 #31	RGS20 (ENSDLEG00000015243) #32	ATP6V1H (ENSDLEG00000015265) #33
Narwhal	MODERN SPECIES	300	CA8 (ENSMMNG00015014739)	ENSMMNG00015014768	TOX (ENSMMNG00015014789)	NSMAF (ENSMMNG00015014823) #8	ENSMMNG00015014889 #9	CYP7A1 (ENSMMNG00015014931) #11	UBXN2B (ENSMMNG00015014945) #12	FAM110B (ENSMMNG00015014967) #13	ENSMMNG00015014975 #14	BPNT2 (ENSMMNG00015014985) #15	PENK (ENSMMNG00015014998) #16	SDR16C5 (ENSMMNG00015015011) #17	CHCHD7 (ENSMMNG00015015047) #19	PLAG1 (ENSMMNG00015015090) #20	MOS (ENSMMNG00015015102) #21	RPS20 (ENSMMNG00015015116) #22	LYN (ENSMMNG00015015150) #24	TGS1 (ENSMMNG00015015178) #25	TMEM68 (ENSMMNG00015015221) #26	XKR4 (ENSMMNG00015015264)	ENSMMNG00015015277	RP1 (ENSMMNG00015015294) #27	SOX17 (ENSMMNG00015015308)	MRPL15 (ENSMMNG00015015322) #29	LYPLA1 (ENSMMNG00015015363) #30	ENSMMNG00015015524 #31	RGS20 (ENSMMNG00015015612) #32	ATP6V1H (ENSMMNG00015015669) #33	OPRK1 (ENSMMNG00015015726) #34	NPBWR1 (ENSMMNG00015015745) #35	RB1CC1 (ENSMMNG00015015771) #36
Sperm whale	DUPLICATION
Sperm whale	MODERN SPECIES	4	CLN5 (ENSPCTG00005009824)	FBXL3 (ENSPCTG00005009923)	MYCBP2 (ENSPCTG00005010000)	ENSPCTG00005011406	SCEL (ENSPCTG00005011562)	SLAIN1 (ENSPCTG00005012618)	EDNRB (ENSPCTG00005012800)	ENSPCTG00005012835	POU4F1 (ENSPCTG00005012843)	RNF219 (ENSPCTG00005012887)	ENSPCTG00005012934	RBM26 (ENSPCTG00005013050)	NDFIP2 (ENSPCTG00005014065)	ENSPCTG00005014186	SPRY2 (ENSPCTG00005014222)	ENSPCTG00005014248 #22	ENSPCTG00005014274	ENSPCTG00005014321	SLITRK1 (ENSPCTG00005008752)	ENSPCTG00005008804	SLITRK6 (ENSPCTG00005008841)	SLITRK5 (ENSPCTG00005008856)	ENSPCTG00005008886	ENSPCTG00005008905	GPC5 (ENSPCTG00005009013)	GPC6 (ENSPCTG00005009153)	DCT (ENSPCTG00005009298)	TGDS (ENSPCTG00005009348)	GPR180 (ENSPCTG00005009414)	SOX21 (ENSPCTG00005009464)	ABCC4 (ENSPCTG00005009511)
Sperm whale	MODERN SPECIES	6	ENSPCTG00005006157	TOX (ENSPCTG00005006198)	NSMAF (ENSPCTG00005006244) #8	SDCBP (ENSPCTG00005006360) #9	CYP7A1 (ENSPCTG00005006470) #11	UBXN2B (ENSPCTG00005006509) #12	FAM110B (ENSPCTG00005006604) #13	ENSPCTG00005006619 #14	IMPAD1 (ENSPCTG00005006632) #15	ENSPCTG00005006655	PENK (ENSPCTG00005006664) #16	SDR16C5 (ENSPCTG00005006691) #17	CHCHD7 (ENSPCTG00005006756) #19	PLAG1 (ENSPCTG00005006882) #20	MOS (ENSPCTG00005006904) #21	RPS20 (ENSPCTG00005006918) #22	LYN (ENSPCTG00005006994) #24	TGS1 (ENSPCTG00005007087) #25	TMEM68 (ENSPCTG00005007220) #26	ENSPCTG00005007335	RP1 (ENSPCTG00005007366) #27	SOX17 (ENSPCTG00005007395)	ENSPCTG00005007411	MRPL15 (ENSPCTG00005007420) #29	LYPLA1 (ENSPCTG00005007458) #30	TCEA1 (ENSPCTG00005007517) #31	RGS20 (ENSPCTG00005007671) #32	ATP6V1H (ENSPCTG00005007732) #33	OPRK1 (ENSPCTG00005007828) #34	NPBWR1 (ENSPCTG00005007847) #35	RB1CC1 (ENSPCTG00005007860) #36
Suina	ANCESTRAL SPECIES	26	ENSGT00940000153886.a.b	ENSGT00940000158863	ENSGT00940000159497	ENSGT00940000155059 #8	ENSGT00940000154502 #9	ENSGT00940000153141.B.a #11	ENSGT00520000055567.a.a.b #12	ENSGT00950000183056.B.b #13	ENSGT00940000160216 #15	ENSGT00950000183149.A #16	ENSGT00940000163618	ENSGT00940000156731 #17	ENSGT00390000001029 #19	ENSGT00940000159246 #20	ENSGT00940000160233 #21	ENSGT00390000003248.a.a.a.b #22	ENSGT00940000158011 #24	ENSGT00390000018056 #25	ENSGT00390000011782 #26	ENSGT01070000253766.A.b	ENSGT00940000154242.b #27	ENSGT00940000156694	ENSGT00390000009040 #29	ENSGT00940000154185 #30	ENSGT00940000155121 #31	ENSGT00940000159123 #32	ENSGT00390000003289 #33	ENSGT00940000157341 #34	ENSGT00940000161936 #35	ENSGT00390000015871 #36	ENSGT00940000159969.a #37
Chacoan peccary	MODERN SPECIES	840	ENSCWAG00000009840	RAB2A (ENSCWAG00000009724)	CA8 (ENSCWAG00000009637)	TOX (ENSCWAG00000009558)	NSMAF (ENSCWAG00000009476) #8	SDCBP (ENSCWAG00000009146) #9	CYP7A1 (ENSCWAG00000009085) #11	UBXN2B (ENSCWAG00000009024) #12	FAM110B (ENSCWAG00000008983) #13	BPNT2 (ENSCWAG00000008943) #15	PENK (ENSCWAG00000008910) #16	SDR16C5 (ENSCWAG00000008786) #17	CHCHD7 (ENSCWAG00000008684) #19	PLAG1 (ENSCWAG00000008649) #20	MOS (ENSCWAG00000008622) #21	RPS20 (ENSCWAG00000008512) #22	LYN (ENSCWAG00000008356) #24	TGS1 (ENSCWAG00000008274) #25	TMEM68 (ENSCWAG00000008128) #26	XKR4 (ENSCWAG00000008058)	RP1 (ENSCWAG00000007943) #27	SOX17 (ENSCWAG00000016827)	MRPL15 (ENSCWAG00000016794) #29	LYPLA1 (ENSCWAG00000016699) #30	TCEA1 (ENSCWAG00000016391) #31	RGS20 (ENSCWAG00000016261) #32	ATP6V1H (ENSCWAG00000016149) #33	OPRK1 (ENSCWAG00000016074) #34	NPBWR1 (ENSCWAG00000016059) #35	RB1CC1 (ENSCWAG00000016009) #36	ALKAL1 (ENSCWAG00000015933) #37
Pig	DUPLICATION
Pig	DUPLICATION
Pig	MODERN SPECIES	10	MAP3K11 (ENSSSCG00000037531)	KCNK7 (ENSSSCG00000012986)	EHBP1L1 (ENSSSCG00000012988)	FAM89B (ENSSSCG00000035604)	ZNRD2 (ENSSSCG00000020737)	LTBP3 (ENSSSCG00000012985)	SCYL1 (ENSSSCG00000012984)	FRMD8 (ENSSSCG00000012992)	SLC25A45 (ENSSSCG00000012993)	TIGD3 (ENSSSCG00000012994)	DPF2 (ENSSSCG00000012995)	CDC42EP2 (ENSSSCG00000012996)	POLA2 (ENSSSCG00000012997)	ENSSSCG00000012998	CAPN1 (ENSSSCG00000012999)	ENSSSCG00000030977 #22	SPDYC (ENSSSCG00000038112)	SYVN1 (ENSSSCG00000039740)	MRPL49 (ENSSSCG00000013001)	FAU (ENSSSCG00000027057)	TM7SF2 (ENSSSCG00000013004)	ZNHIT2 (ENSSSCG00000013003)	VPS51 (ENSSSCG00000013005)	TMEM262 (ENSSSCG00000047012)	ZFPL1 (ENSSSCG00000013007)	CDCA5 (ENSSSCG00000013008)	NAALADL1 (ENSSSCG00000013010)	SAC3D1 (ENSSSCG00000013011)	SNX15 (ENSSSCG00000013012)	ARL2 (ENSSSCG00000034387)	BATF2 (ENSSSCG00000023178)
Pig	MODERN SPECIES	10	SSH3 (ENSSSCG00000027956)	ANKRD13D (ENSSSCG00000012917)	GRK2 (ENSSSCG00000012918)	KDM2A (ENSSSCG00000029637)	RHOD (ENSSSCG00000022726)	SYT12 (ENSSSCG00000024837)	C11orf86 (ENSSSCG00000040729)	PC (ENSSSCG00000012926)	LRFN4 (ENSSSCG00000039360)	RCE1 (ENSSSCG00000012927)	C11orf80 (ENSSSCG00000029902)	SPTBN2 (ENSSSCG00000038508)	ENSSSCG00000038304	RBM14 (ENSSSCG00000038008)	RBM4 (ENSSSCG00000058325)	ENSSSCG00000040263 #22	CCS (ENSSSCG00000012934)	CCDC87 (ENSSSCG00000012933)	CTSF (ENSSSCG00000038918)	ACTN3 (ENSSSCG00000038323)	ENSSSCG00000021891	BBS1 (ENSSSCG00000040416)	DPP3 (ENSSSCG00000030415)	PELI3 (ENSSSCG00000012944)	MRPL11 (ENSSSCG00000012943)	NPAS4 (ENSSSCG00000012942)	SLC29A2 (ENSSSCG00000012941)	B4GAT1 (ENSSSCG00000012940)	BRMS1 (ENSSSCG00000012939)	ENSSSCG00000012950	ENSSSCG00000047415
Pig	MODERN SPECIES	12	RAB2A (ENSSSCG00000006232)	CA8 (ENSSSCG00000006233)	TOX (ENSSSCG00000006235)	NSMAF (ENSSSCG00000006236) #8	SDCBP (ENSSSCG00000006237) #9	CYP7A1 (ENSSSCG00000006238) #11	UBXN2B (ENSSSCG00000006239) #12	FAM110B (ENSSSCG00000006240) #13	BPNT2 (ENSSSCG00000032846) #15	PENK (ENSSSCG00000006243) #16	ENSSSCG00000036133	SDR16C5 (ENSSSCG00000006245) #17	ENSSSCG00000032573	PLAG1 (ENSSSCG00000006247) #20	MOS (ENSSSCG00000006248) #21	RPS20 (ENSSSCG00000040470) #22	LYN (ENSSSCG00000006250) #24	TGS1 (ENSSSCG00000006251) #25	TMEM68 (ENSSSCG00000006252) #26	XKR4 (ENSSSCG00000031813)	RP1 (ENSSSCG00000042752) #27	SOX17 (ENSSSCG00000060730)	MRPL15 (ENSSSCG00000030578) #29	LYPLA1 (ENSSSCG00000006260) #30	TCEA1 (ENSSSCG00000006261) #31	RGS20 (ENSSSCG00000006262) #32	ATP6V1H (ENSSSCG00000006263) #33	OPRK1 (ENSSSCG00000006264) #34	NPBWR1 (ENSSSCG00000059721) #35	RB1CC1 (ENSSSCG00000028902) #36	ALKAL1 (ENSSSCG00000033922) #37
Euarchontoglires	ANCESTRAL SPECIES	19	ENSGT00940000158863	ENSGT00940000159497	ENSGT00940000155059 #8	ENSGT00940000154502 #9	ENSGT00940000153141.B.a #11	ENSGT00520000055567.a.a.b #12	ENSGT00950000183056.B.b #13	ENSGT00840000130804 #14	ENSGT00940000160216 #15	ENSGT00950000183149.A #16	ENSGT00940000163618	ENSGT00940000156731 #17	ENSGT00390000001029 #19	ENSGT00940000159246 #20	ENSGT00940000160233 #21	ENSGT00390000003248.a.a.a.b #22	ENSGT00940000158011 #24	ENSGT00390000018056 #25	ENSGT00390000011782 #26	ENSGT01070000253766.A.b	ENSGT00940000164647	ENSGT00940000154242.b #27	ENSGT00940000156694	ENSGT00390000009040 #29	ENSGT00940000154185 #30	ENSGT00940000155121 #31	ENSGT00940000159123 #32	ENSGT00390000003289 #33	ENSGT00940000157341 #34	ENSGT00940000161936 #35	ENSGT00390000015871 #36
Euarchontoglires_A	ANCESTRAL SPECIES	19	ENSGT00940000153886.a.b.f	ENSGT00940000158863	ENSGT00940000159497	ENSGT00940000155059 #8	ENSGT00940000154502 #9	ENSGT00940000153141.B.a #11	ENSGT00520000055567.a.a.b #12	ENSGT00950000183056.B.b #13	ENSGT00940000160216 #15	ENSGT00950000183149.A #16	ENSGT00940000163618	ENSGT00940000156731 #17	ENSGT00390000001029 #19	ENSGT00940000159246 #20	ENSGT00940000160233 #21	ENSGT00390000003248.a.a.a.b #22	ENSGT00940000158011 #24	ENSGT00390000018056 #25	ENSGT00390000011782 #26	ENSGT01070000253766.A.b	ENSGT00940000164647	ENSGT00940000154242.b #27	ENSGT00940000156694	ENSGT00390000009040 #29	ENSGT00940000154185 #30	ENSGT00940000155121 #31	ENSGT00940000159123 #32	ENSGT00390000003289 #33	ENSGT00940000157341 #34	ENSGT00940000161936 #35	ENSGT00390000015871 #36
Glires	ANCESTRAL SPECIES	20	ENSGT00940000153886.a.b.f	ENSGT00940000158863	ENSGT00940000159497	ENSGT00940000155059 #8	ENSGT00940000154502 #9	ENSGT00940000153141.B.a #11	ENSGT00520000055567.a.a.b #12	ENSGT00950000183056.B.b #13	ENSGT00940000160216 #15	ENSGT00950000183149.A #16	ENSGT00940000163618	ENSGT00940000156731 #17	ENSGT00390000001029 #19	ENSGT00940000159246 #20	ENSGT00940000160233 #21	ENSGT00390000003248.a.a.a.b #22	ENSGT00940000158011 #24	ENSGT00390000018056 #25	ENSGT00390000011782 #26	ENSGT01070000253766.A.b	ENSGT00940000164647	ENSGT00940000154242.b #27	ENSGT00940000156694	ENSGT00390000009040 #29	ENSGT00940000154185 #30	ENSGT00940000155121 #31	ENSGT00940000159123 #32	ENSGT00390000003289 #33	ENSGT00940000157341 #34	ENSGT00940000161936 #35	ENSGT00390000015871 #36
Lagomorpha	ANCESTRAL SPECIES	112										ENSGT00950000183149.A #16	ENSGT00940000163618	ENSGT00940000156731 #17	ENSGT00390000001029 #19	ENSGT00940000159246 #20	ENSGT00940000160233 #21	ENSGT00390000003248.a.a.a.b #22	ENSGT00940000158011 #24	ENSGT00390000018056 #25	ENSGT00390000011782 #26	ENSGT01070000253766.A.b	ENSGT00940000154242.b #27	ENSGT00940000156694.hb	ENSGT00940000156694.gb	ENSGT00390000009040 #29	ENSGT00940000154185 #30	ENSGT00940000155121 #31	ENSGT00940000159123 #32	ENSGT00390000003289 #33	ENSGT00940000157341 #34	ENSGT00940000161936 #35	ENSGT00390000015871 #36
Pika	MODERN SPECIES	3138																RPS20 (ENSOPRG00000011042) #22	LYN (ENSOPRG00000011016) #24	ENSOPRG00000010995 #25	TMEM68 (ENSOPRG00000010979) #26
Rabbit	DUPLICATION
Rabbit	MODERN SPECIES	10	TUBD1 (ENSOCUG00000013772)	VMP1 (ENSOCUG00000004210)	PTRH2 (ENSOCUG00000023345)	CLTC (ENSOCUG00000016413)	DHX40 (ENSOCUG00000038496)	ENSOCUG00000031327	ENSOCUG00000035846	YPEL2 (ENSOCUG00000020978)	GDPD1 (ENSOCUG00000013113)	SMG8 (ENSOCUG00000002350)	PRR11 (ENSOCUG00000002337)	ENSOCUG00000002334	TRIM37 (ENSOCUG00000002326)	PPM1E (ENSOCUG00000026526)	ENSOCUG00000002269	ENSOCUG00000025769 #22	TEX14 (ENSOCUG00000009775)	ENSOCUG00000009757	MTMR4 (ENSOCUG00000009743)	HSF5 (ENSOCUG00000009733)	RNF43 (ENSOCUG00000009729)	SUPT4H1 (ENSOCUG00000025823)	TSPOAP1 (ENSOCUG00000009705)	MPO (ENSOCUG00000006526)	LPO (ENSOCUG00000009698)	MKS1 (ENSOCUG00000010018)	EPX (ENSOCUG00000010009)	OR4D2 (ENSOCUG00000010006)	OR4D1 (ENSOCUG00000011022)	DYNLL2 (ENSOCUG00000016563)	ENSOCUG00000017678
Rabbit	MODERN SPECIES	6	RRH (ENSOCUG00000034648)	MCUB (ENSOCUG00000013751)	LRIT3 (ENSOCUG00000003908)	EGF (ENSOCUG00000016388)	ELOVL6 (ENSOCUG00000013069)	ENPEP (ENSOCUG00000016264)	PITX2 (ENSOCUG00000012685)	FAM241A (ENSOCUG00000011383)	AP1AR (ENSOCUG00000004413)	TIFA (ENSOCUG00000017578)	ALPK1 (ENSOCUG00000024991)	ENSOCUG00000010848	NEUROG2 (ENSOCUG00000007063)	ZGRF1 (ENSOCUG00000007057)	LARP7 (ENSOCUG00000007073)	ENSOCUG00000021222 #22	ANK2 (ENSOCUG00000010618)	ENSOCUG00000035520	CAMK2D (ENSOCUG00000023650)	ENSOCUG00000030939	UGT8 (ENSOCUG00000015037)	NDST4 (ENSOCUG00000007796)	ENSOCUG00000002295	ENSOCUG00000003691	TRAM1L1 (ENSOCUG00000003846)	ENSOCUG00000038669	NDST3 (ENSOCUG00000009952)	PRSS12 (ENSOCUG00000013625)	ENSOCUG00000033772	PABPC4L (ENSOCUG00000028226)	ENSOCUG00000038661
Rabbit	MODERN SPECIES	14	CYP7A1 (ENSOCUG00000012283) #11	UBXN2B (ENSOCUG00000023461) #12	FAM110B (ENSOCUG00000028224) #13	ENSOCUG00000035749	ENSOCUG00000034339	ENSOCUG00000034482	BPNT2 (ENSOCUG00000004428) #15	ENSOCUG00000033892	ENSOCUG00000012122	ENSOCUG00000007052 #16	ENSOCUG00000023853	SDR16C5 (ENSOCUG00000009657) #17	ENSOCUG00000036164 #19	PLAG1 (ENSOCUG00000006001) #20	MOS (ENSOCUG00000014049) #21	ENSOCUG00000003068 #22	LYN (ENSOCUG00000003056) #24	TGS1 (ENSOCUG00000017522) #25	TMEM68 (ENSOCUG00000017517) #26	ENSOCUG00000027524	XKR4 (ENSOCUG00000017875)	RP1 (ENSOCUG00000015022) #27	ENSOCUG00000037040	ENSOCUG00000012651	ENSOCUG00000008012	MRPL15 (ENSOCUG00000001949) #29	LYPLA1 (ENSOCUG00000006751) #30	ENSOCUG00000001051 #32	ATP6V1H (ENSOCUG00000016298) #33	OPRK1 (ENSOCUG00000003120) #34	NPBWR1 (ENSOCUG00000028231) #35
Rabbit	DUPLICATION
Rabbit	MODERN SPECIES		ENSOCUG00000030357	ENSOCUG00000038359	ENSOCUG00000030169	ENSOCUG00000037426	ENSOCUG00000031086	INSL6 (ENSOCUG00000013682)	ENSOCUG00000037721	JAK2 (ENSOCUG00000016853)	RCL1 (ENSOCUG00000008161)	ENSOCUG00000013279	ENSOCUG00000011411	CDC37L1 (ENSOCUG00000003468)	SPATA6L (ENSOCUG00000003455)	PLPP6 (ENSOCUG00000003465)	ENSOCUG00000022202	ENSOCUG00000026987 #22	ENSOCUG00000013264	ENSOCUG00000036407	GLIS3 (ENSOCUG00000023004)	ENSOCUG00000027590	ENSOCUG00000023393	RFX3 (ENSOCUG00000014086)	ENSOCUG00000039572	ENSOCUG00000004189	KCNV2 (ENSOCUG00000004385)	VLDLR (ENSOCUG00000002231)	ENSOCUG00000022775	SMARCA2 (ENSOCUG00000006320)	ENSOCUG00000000241	ENSOCUG00000035677	ENSOCUG00000023438
Rabbit	MODERN SPECIES	5	KCNMB3 (ENSOCUG00000010643)	MFN1 (ENSOCUG00000000928)	GNB4 (ENSOCUG00000000931)	ACTL6A (ENSOCUG00000017883)	MRPL47 (ENSOCUG00000017886)	NDUFB5 (ENSOCUG00000017887)	USP13 (ENSOCUG00000006043)	ENSOCUG00000039309	PEX5L (ENSOCUG00000006053)	TTC14 (ENSOCUG00000000806)	CCDC39 (ENSOCUG00000000812)	FXR1 (ENSOCUG00000023518)	DNAJC19 (ENSOCUG00000014043)	ENSOCUG00000035765	ENSOCUG00000031658	ENSOCUG00000028029 #22	ATP11B (ENSOCUG00000012358)	DCUN1D1 (ENSOCUG00000012386)	MCCC1 (ENSOCUG00000012393)	ENSOCUG00000005563	RFC4 (ENSOCUG00000005014)	ENSOCUG00000005011	ENSOCUG00000031344	KNG1 (ENSOCUG00000005003)	HRG (ENSOCUG00000011687)	FETUB (ENSOCUG00000001032)	AHSG (ENSOCUG00000002057)	DNAJB11 (ENSOCUG00000002053)	TBCCD1 (ENSOCUG00000002050)	CRYGS (ENSOCUG00000022375)	DGKG (ENSOCUG00000005238)
Rodentia	DUPLICATION
Rodentia	DUPLICATION
Rodentia	DUPLICATION
Rodentia	ANCESTRAL SPECIES																	ENSGT00390000003248.a.a.a.b.cb.a.a #22
Rodentia_B	ANCESTRAL SPECIES																	ENSGT00390000003248.a.a.a.b.cb.a.a #22
Myomorpha	ANCESTRAL SPECIES																	ENSGT00390000003248.a.a.a.b.cb.a.a #22
Muroidea	ANCESTRAL SPECIES																	ENSGT00390000003248.a.a.a.b.cb.a.a #22
Muroidea_A	ANCESTRAL SPECIES																	ENSGT00390000003248.a.a.a.b.cb.a.a #22
Murinae	ANCESTRAL SPECIES																	ENSGT00390000003248.a.a.a.b.cb.a.a #22
Mus	ANCESTRAL SPECIES																	ENSGT00390000003248.a.a.a.b.cb.a.a #22
Mus_A	ANCESTRAL SPECIES																	ENSGT00390000003248.a.a.a.b.cb.a.a #22
Mus_B	ANCESTRAL SPECIES	22	ENSGT00940000158863	ENSGT00940000159497	ENSGT00940000155059 #8	ENSGT00940000154502 #9	ENSGT00940000153141.B.a #11	ENSGT00520000055567.a.a.b #12	ENSGT00950000183056.B.b #13	ENSGT00940000160216 #15	ENSGT00940000154383.s.a	ENSGT00950000183149.A #16	ENSGT00940000163618	ENSGT00940000156731 #17	ENSGT00390000001029 #19	ENSGT00940000159246 #20	ENSGT00940000160233 #21	ENSGT00390000003248.a.a.a.b.cb.a.a #22	ENSGT00390000003248.a.a.a.b.db #22	ENSGT00940000158011 #24	ENSGT00390000018056.f #25	ENSGT00390000011782 #26
Mus_C	ANCESTRAL SPECIES	2	ENSGT00940000158863	ENSGT00940000159497	ENSGT00940000155059 #8	ENSGT00940000154502 #9	ENSGT00940000153141.B.a #11	ENSGT00520000055567.a.a.b #12	ENSGT00950000183056.B.b #13	ENSGT00940000160216 #15	ENSGT00940000154383.s.a	ENSGT00950000183149.A #16	ENSGT00940000163618	ENSGT00940000156731 #17	ENSGT00390000001029 #19	ENSGT00940000159246 #20	ENSGT00940000160233 #21	ENSGT00390000003248.a.a.a.b.cb.a.a #22	ENSGT00940000158011 #24	ENSGT00390000018056.f #25	ENSGT00390000011782 #26
Steppe mouse	MODERN SPECIES	3083	ENSMSIG00000023749	Cyp7a1 (ENSMSIG00000023757) #11	Ubxn2b (ENSMSIG00000023768) #12	ENSMSIG00000023784	Fam110b (ENSMSIG00000023787) #13	ENSMSIG00000023798	ENSMSIG00000023802	Bpnt2 (ENSMSIG00000023807) #15	ENSMSIG00000023818	Penk (ENSMSIG00000023830) #16	Sdr16c6 (ENSMSIG00000023838)	Sdr16c5 (ENSMSIG00000023861) #17	Chchd7 (ENSMSIG00000023876) #19	Plag1 (ENSMSIG00000023923) #20	Mos (ENSMSIG00000023932) #21	ENSMSIG00000023940 #22
spretus	MODERN SPECIES	13	Rab2a (MGP_SPRETEiJ_G0026744)	Car8 (MGP_SPRETEiJ_G0026743)	Tox (MGP_SPRETEiJ_G0026742)	Nsmaf (MGP_SPRETEiJ_G0026741) #8	Sdcbp (MGP_SPRETEiJ_G0026740) #9	Cyp7a1 (MGP_SPRETEiJ_G0026739) #11	Ubxn2b (MGP_SPRETEiJ_G0026738) #12	Fam110b (MGP_SPRETEiJ_G0026737) #13	MGP_SPRETEiJ_G0026736 #15	Penk (MGP_SPRETEiJ_G0026735) #16	Sdr16c6 (MGP_SPRETEiJ_G0026734)	Sdr16c5 (MGP_SPRETEiJ_G0026733) #17	Chchd7 (MGP_SPRETEiJ_G0026732) #19	Plag1 (MGP_SPRETEiJ_G0026731) #20	Mos (MGP_SPRETEiJ_G0026730) #21	Rps20 (MGP_SPRETEiJ_G0026729) #22	Lyn (MGP_SPRETEiJ_G0026728) #24	Tgs1 (MGP_SPRETEiJ_G0026727) #25	MGP_SPRETEiJ_G0026726 #25	MGP_SPRETEiJ_G0026725
Rat	MODERN SPECIES	19	RGD1559960 (ENSRNOG00000068175)	ENSRNOG00000069656	Sult1c2a (ENSRNOG00000042111)	LOC102551938 (ENSRNOG00000067413)	LOC120093086 (ENSRNOG00000065530)	LOC301165 (ENSRNOG00000046714)	Sgo1 (ENSRNOG00000022499)	Kat2b (ENSRNOG00000011871)	Pp2d1 (ENSRNOG00000004719)	Rab5a (ENSRNOG00000057056)	LOC103690615 (ENSRNOG00000000124)	Efhb (ENSRNOG00000012618)	LOC689479 (ENSRNOG00000046576)	Kcnh8 (ENSRNOG00000058626)	Satb1 (ENSRNOG00000012942)	Rps20-ps11 (ENSRNOG00000030345) #22	Tbc1d5 (ENSRNOG00000010637)	Plcl2 (ENSRNOG00000013368)	ENSRNOG00000064269	LOC120094619 (ENSRNOG00000063528)	AABR07066416.2 (ENSRNOG00000046104)	ENSRNOG00000070668	LOC120093071 (ENSRNOG00000049503)	ENSRNOG00000070131	LOC120094615 (ENSRNOG00000068213)	LOC120094611 (ENSRNOG00000066837)	LOC108351878 (ENSRNOG00000062425)	LOC100360856 (ENSRNOG00000047581)	LOC120094612 (ENSRNOG00000064783)	LOC120094606 (ENSRNOG00000067046)	ENSRNOG00000066561
Cricetidae	ANCESTRAL SPECIES																	ENSGT00390000003248.a.a.a.b.cb.a.a #22
Cricetidae_B	ANCESTRAL SPECIES	50	ENSGT00940000158863	ENSGT00940000159497	ENSGT00940000155059 #8	ENSGT00940000154502 #9	ENSGT00940000153141.B.a #11	ENSGT00520000055567.a.a.b #12	ENSGT00950000183056.B.b #13	ENSGT00940000160216 #15	ENSGT00940000154383.s.a	ENSGT00950000183149.A #16	ENSGT00940000163618	ENSGT00940000156731 #17	ENSGT00390000001029 #19	ENSGT00940000159246 #20	ENSGT00940000160233 #21	ENSGT00390000003248.a.a.a.b.cb.a.a #22	ENSGT00390000003248.a.a.a.b.db.d #22	ENSGT00940000158011 #24	ENSGT00390000018056 #25	ENSGT00390000011782 #26	ENSGT01070000253766.A.b	ENSGT00940000154242.b #27	ENSGT00940000156694	ENSGT00390000009040 #29	ENSGT00940000154185 #30	ENSGT00940000155121 #31	ENSGT00940000159123 #32	ENSGT00390000003289 #33	ENSGT00940000157341 #34	ENSGT00940000161936 #35	ENSGT00390000015871 #36
Northern American deer mouse	MODERN SPECIES	11	Car8 (ENSPEMG00000019908)	Tox (ENSPEMG00000019966)	Nsmaf (ENSPEMG00000019696) #8	Sdcbp (ENSPEMG00000020043) #9	Cyp7a1 (ENSPEMG00000019921) #11	Ubxn2b (ENSPEMG00000028233) #12	Fam110b (ENSPEMG00000028969) #13	Bpnt2 (ENSPEMG00000000461) #15	ENSPEMG00000015262	Penk (ENSPEMG00000016794) #16	Sdr16c6 (ENSPEMG00000023129)	Sdr16c5 (ENSPEMG00000021917) #17	ENSPEMG00000023256	Plag1 (ENSPEMG00000027390) #20	Mos (ENSPEMG00000008516) #21	ENSPEMG00000029829 #22	Lyn (ENSPEMG00000021545) #24	ENSPEMG00000029859	Tgs1 (ENSPEMG00000007957) #25	Tmem68 (ENSPEMG00000021534) #26	ENSPEMG00000030336 #30	Xkr4 (ENSPEMG00000021985)	Rp1 (ENSPEMG00000013397) #27	ENSPEMG00000014386	ENSPEMG00000026817	Sox17 (ENSPEMG00000030488)	Mrpl15 (ENSPEMG00000000583) #29	ENSPEMG00000027695	ENSPEMG00000014138 #30	Tcea1 (ENSPEMG00000023948) #31	Rgs20 (ENSPEMG00000009893) #32
Rodentia_A	ANCESTRAL SPECIES	18	ENSGT00940000153886.a.b.f	ENSGT00940000158863	ENSGT00940000159497	ENSGT00940000155059 #8	ENSGT00940000154502 #9	ENSGT00940000153141.B.a #11	ENSGT00520000055567.a.a.b #12	ENSGT00950000183056.B.b #13	ENSGT00940000160216 #15	ENSGT00950000183149.A #16	ENSGT00940000163618	ENSGT00940000156731 #17	ENSGT00390000001029 #19	ENSGT00940000159246 #20	ENSGT00940000160233 #21	ENSGT00390000003248.a.a.a.b.cb.a.a #22	ENSGT00940000158011 #24	ENSGT00390000018056 #25	ENSGT00390000011782 #26	ENSGT01070000253766.A.b	ENSGT00940000154242.b #27	ENSGT00940000156694	ENSGT00390000009040 #29	ENSGT00940000154185 #30	ENSGT00940000155121 #31	ENSGT00940000159123 #32	ENSGT00390000003289 #33	ENSGT00940000157341 #34	ENSGT00940000161936 #35	ENSGT00390000015871 #36	ENSGT00940000159969.a #37
Sciuridae	ANCESTRAL SPECIES	17	ENSGT00940000158863	ENSGT00940000159497	ENSGT00940000155059 #8	ENSGT00940000154502 #9	ENSGT00940000153141.B.a #11	ENSGT00520000055567.a.a.b #12	ENSGT00950000183056.B.b #13	ENSGT00940000160216 #15	ENSGT00950000183149.A #16	ENSGT00940000163618	ENSGT00940000156731 #17	ENSGT00390000001029 #19	ENSGT00940000159246 #20	ENSGT00940000160233 #21	ENSGT00390000003248.a.a.a.b.db #22	ENSGT00390000003248.a.a.a.b.cb.a.a #22	ENSGT00940000158011 #24	ENSGT00390000018056 #25	ENSGT00390000011782 #26	ENSGT01070000253766.A.b	ENSGT00940000154242.b #27	ENSGT00940000156694	ENSGT00390000009040 #29	ENSGT00940000154185 #30	ENSGT00940000155121 #31	ENSGT00940000159123 #32	ENSGT00390000003289 #33	ENSGT00940000157341 #34	ENSGT00940000161936 #35	ENSGT00390000015871 #36	ENSGT00940000159969.a #37
Eurasian red squirrel	MODERN SPECIES		CA8 (ENSSVLG00005012006)	TOX (ENSSVLG00005011958)	NSMAF (ENSSVLG00005011910) #8	SDCBP (ENSSVLG00005011445) #9	CYP7A1 (ENSSVLG00005011337) #11	UBXN2B (ENSSVLG00005011261) #12	FAM110B (ENSSVLG00005011236) #13	BPNT2 (ENSSVLG00005011167) #15	PENK (ENSSVLG00005011127) #16	ENSSVLG00005010971	SDR16C5 (ENSSVLG00005010895) #17	ENSSVLG00005010860	CHCHD7 (ENSSVLG00005010790) #19	PLAG1 (ENSSVLG00005010731) #20	MOS (ENSSVLG00005010710) #21	RPS20 (ENSSVLG00005010588) #22	LYN (ENSSVLG00005010475) #24	TGS1 (ENSSVLG00005010446) #25	ENSSVLG00005010412	ENSSVLG00005010285 #26	XKR4 (ENSSVLG00005010234)	RP1 (ENSSVLG00005009858) #27	SOX17 (ENSSVLG00005009789)	MRPL15 (ENSSVLG00005009764) #29	ENSSVLG00005009666 #30	ENSSVLG00005009646	TCEA1 (ENSSVLG00005009501) #31	RGS20 (ENSSVLG00005009394) #32	ENSSVLG00005009360	ATP6V1H (ENSSVLG00005009299) #33	ENSSVLG00005009270
Marmotini	ANCESTRAL SPECIES																	ENSGT00390000003248.a.a.a.b.cb.a.a #22
Marmotini_b	ANCESTRAL SPECIES	52	ENSGT00940000157108	ENSGT00940000159307	ENSGT00940000155894	ENSGT00390000005870	ENSGT00940000157544	ENSGT00940000153141.B.a #11	ENSGT00520000055567.a.a.b #12	ENSGT00950000183056.B.b #13	ENSGT00940000160216 #15	ENSGT00950000183149.A #16	ENSGT00940000163618	ENSGT00940000156731 #17	ENSGT00390000001029 #19	ENSGT00940000159246 #20	ENSGT00940000160233 #21	ENSGT00390000003248.a.a.a.b.cb.a.a #22	ENSGT00940000158011 #24	ENSGT00390000018056 #25	ENSGT00390000011782 #26	ENSGT01070000253766.A.b	ENSGT00940000154242.b #27	ENSGT00940000156694	ENSGT00390000009040 #29	ENSGT00940000154185 #30	ENSGT00940000155121 #31	ENSGT00940000159123 #32	ENSGT00390000003289 #33	ENSGT00940000157341 #34	ENSGT00940000161936 #35	ENSGT00390000015871 #36	ENSGT00940000159969.a #37
Arctic ground squirrel	MODERN SPECIES	137																RPS20 (ENSUPAG00010002625) #22	LYN (ENSUPAG00010002635) #24	TMEM68 (ENSUPAG00010002929) #26	XKR4 (ENSUPAG00010002936)	RP1 (ENSUPAG00010002942) #27	ENSUPAG00010002961	SOX17 (ENSUPAG00010002964)	MRPL15 (ENSUPAG00010002973) #29	LYPLA1 (ENSUPAG00010002986) #30	TCEA1 (ENSUPAG00010003008) #31	ENSUPAG00010003023	RGS20 (ENSUPAG00010003027) #32	ATP6V1H (ENSUPAG00010003037) #33	OPRK1 (ENSUPAG00010003107) #34	ENSUPAG00010003124	NPBWR1 (ENSUPAG00010003128) #35
Hystricomorpha	ANCESTRAL SPECIES	12	ENSGT00940000153886.a.b.f	ENSGT00940000158863	ENSGT00940000159497	ENSGT00940000155059 #8	ENSGT00940000154502 #9	ENSGT00940000153141.B.a #11	ENSGT00520000055567.a.a.b #12	ENSGT00950000183056.B.b #13	ENSGT00940000160216 #15	ENSGT00950000183149.A #16	ENSGT00940000163618	ENSGT00940000156731 #17	ENSGT00390000001029 #19	ENSGT00940000159246 #20	ENSGT00940000160233 #21	ENSGT00390000003248.a.a.a.b.cb.a.a #22	ENSGT00390000003248.a.b.b ##22	ENSGT00390000003248.a.a.a.b.cb.b.b #22	ENSGT00940000158011 #24	ENSGT00390000018056 #25	ENSGT00390000011782 #26	ENSGT01070000253766.A.b	ENSGT00940000154242.b #27	ENSGT00940000156694	ENSGT00390000009040 #29	ENSGT00940000154185.cb #30	ENSGT00940000155121 #31	ENSGT00940000159123 #32	ENSGT00390000003289 #33	ENSGT00940000157341 #34	ENSGT00940000161936 #35
Hystricomorpha_a	ANCESTRAL SPECIES	9	ENSGT00940000153886.a.b.f	ENSGT00940000158863	ENSGT00940000159497	ENSGT00940000155059 #8	ENSGT00940000154502 #9	ENSGT00940000153141.B.a #11	ENSGT00520000055567.a.a.b #12	ENSGT00950000183056.B.b #13	ENSGT00940000160216 #15	ENSGT00950000183149.A #16	ENSGT00940000163618	ENSGT00940000156731 #17	ENSGT00390000001029 #19	ENSGT00940000159246 #20	ENSGT00940000160233 #21	ENSGT00390000003248.a.a.a.b.cb.a.a #22	ENSGT00390000003248.a.a.a.b.cb.b.b #22	ENSGT00940000158011 #24	ENSGT00390000018056 #25	ENSGT00390000011782 #26	ENSGT01070000253766.A.b	ENSGT00940000154242.b #27	ENSGT00940000156694	ENSGT00390000009040 #29	ENSGT00940000154185.cb #30	ENSGT00940000155121 #31	ENSGT00940000159123 #32	ENSGT00390000003289 #33	ENSGT00940000157341 #34	ENSGT00940000161936 #35	ENSGT00390000015871.v #36
Guinea pig	MODERN SPECIES	64								FAM110B (ENSCPOG00000033617) #13	BPNT2 (ENSCPOG00000023705) #15	PENK (ENSCPOG00000031786) #16	ENSCPOG00000020018	SDR16C5 (ENSCPOG00000000571) #17	CHCHD7 (ENSCPOG00000030280) #19	PLAG1 (ENSCPOG00000039131) #20	MOS (ENSCPOG00000020476) #21	ENSCPOG00000011697 #22	ENSCPOG00000030320	LYN (ENSCPOG00000011693) #24	TGS1 (ENSCPOG00000009713) #25	TMEM68 (ENSCPOG00000019826) #26	XKR4 (ENSCPOG00000003676)	ENSCPOG00000039324 #27	SOX17 (ENSCPOG00000000892)	MRPL15 (ENSCPOG00000035946) #29	LYPLA1 (ENSCPOG00000022715) #30	TCEA1 (ENSCPOG00000005886) #31	ENSCPOG00000038533 #32	ENSCPOG00000022816	ATP6V1H (ENSCPOG00000012174) #33	ENSCPOG00000023180	OPRK1 (ENSCPOG00000006607) #34
Hystricomorpha_b	ANCESTRAL SPECIES																	ENSGT00390000003248.a.a.a.b.cb.a.a #22
Degu	MODERN SPECIES	126																ENSODEG00000019073 #22	ENSODEG00000004554	ENSODEG00000005181	HMMR (ENSODEG00000004387)	ENSODEG00000004867	ENSODEG00000005448	TENM2 (ENSODEG00000005069)	WWC1 (ENSODEG00000004850)	RARS1 (ENSODEG00000005980)	ENSODEG00000005759	FBLL1 (ENSODEG00000019199)	PANK3 (ENSODEG00000005503)	SLIT3 (ENSODEG00000005145)	ENSODEG00000006240	INSYN2B (ENSODEG00000006097)	DOCK2 (ENSODEG00000004282)
Rodentia	ANCESTRAL SPECIES																	ENSGT00390000003248.a.a.a.b.cb.a.b #22
Rodentia_B	ANCESTRAL SPECIES																	ENSGT00390000003248.a.a.a.b.cb.a.b #22
Myomorpha	ANCESTRAL SPECIES																	ENSGT00390000003248.a.a.a.b.cb.a.b #22
Muroidea	ANCESTRAL SPECIES																	ENSGT00390000003248.a.a.a.b.cb.a.b #22
Muroidea_A	ANCESTRAL SPECIES																	ENSGT00390000003248.a.a.a.b.cb.a.b #22
Murinae	ANCESTRAL SPECIES																	ENSGT00390000003248.a.a.a.b.cb.a.b #22
Rat	DUPLICATION
Rat	MODERN SPECIES	13	ENSRNOG00000067722	Pdcl (ENSRNOG00000008484)	Rc3h2 (ENSRNOG00000009196)	Zbtb6 (ENSRNOG00000009340)	Zbtb26 (ENSRNOG00000009346)	Rabgap1 (ENSRNOG00000009402)	Gpr21 (ENSRNOG00000042269)	Strbp (ENSRNOG00000010150)	RGD1561137 (ENSRNOG00000030143)	Crb2 (ENSRNOG00000025498)	Dennd1a (ENSRNOG00000010526)	Lhx2 (ENSRNOG00000010551)	Nek6 (ENSRNOG00000010897)	Psmb7 (ENSRNOG00000011732)	ENSRNOG00000066446	Rps20 (ENSRNOG00000029627) #22	Nr5a1 (ENSRNOG00000012682)	Nr6a1 (ENSRNOG00000013232)	Olfml2a (ENSRNOG00000014034)	Wdr38 (ENSRNOG00000014102)	Rpl35 (ENSRNOG00000014272)	Arpc5l (ENSRNOG00000014317)	Golga1 (ENSRNOG00000014493)	Scai (ENSRNOG00000025278)	Ppp6c (ENSRNOG00000015145)	AABR07051831.1 (ENSRNOG00000015854)	LOC100362366 (ENSRNOG00000028690)	Lrp1b (ENSRNOG00000030243)	Kynu (ENSRNOG00000029993)	Arhgap15 (ENSRNOG00000031168)	Gtdc1 (ENSRNOG00000031038)
Rat	MODERN SPECIES	15	Cyp7a1 (ENSRNOG00000009488) #11	Ubxn2b (ENSRNOG00000071045) #12	ENSRNOG00000063053	Fam110b (ENSRNOG00000009114) #13	ENSRNOG00000069204	Bpnt2 (ENSRNOG00000046647) #15	RGD1563405 (ENSRNOG00000069142)	Penk (ENSRNOG00000008943) #16	Sdr16c6 (ENSRNOG00000067216)	Sdr16c6 (ENSRNOG00000040151)	Sdr16c5 (ENSRNOG00000008871) #17	Chchd7 (ENSRNOG00000031769)	Plag1 (ENSRNOG00000008846) #20	LOC100364265 (ENSRNOG00000012088)	Mos (ENSRNOG00000008567) #21	Rps20-ps10 (ENSRNOG00000008555) #22	Lyn (ENSRNOG00000008180) #24	Tgs1 (ENSRNOG00000008156) #25	Tmem68 (ENSRNOG00000008872) #26	Xkr4 (ENSRNOG00000027276)	Cyld-ps1 (ENSRNOG00000008861)	Rp1 (ENSRNOG00000008807) #27	ENSRNOG00000065942	Sumo4 (ENSRNOG00000069967)	Sox17 (ENSRNOG00000027357)	Mrpl15 (ENSRNOG00000008566) #29	Lypla1 (ENSRNOG00000008320) #30	Tcea1 (ENSRNOG00000022323) #31	Rgs20 (ENSRNOG00000008100) #32	Atp6v1h (ENSRNOG00000030862) #33	Oprk1 (ENSRNOG00000007647) #34
Cricetidae	ANCESTRAL SPECIES																	ENSGT00390000003248.a.a.a.b.cb.a.b #22
Cricetidae_B	ANCESTRAL SPECIES																	ENSGT00390000003248.a.a.a.b.cb.a.b #22
Northern American deer mouse	MODERN SPECIES	10			Tmx3 (ENSPEMG00000011968)	ENSPEMG00000030219	Dok6 (ENSPEMG00000019316)	Cd226 (ENSPEMG00000029583)	Rttn (ENSPEMG00000019864)	ENSPEMG00000027089	Socs6 (ENSPEMG00000009086)	ENSPEMG00000009228 ##12	ENSPEMG00000004621	ENSPEMG00000028176	Cbln2 (ENSPEMG00000024653)	Neto1 (ENSPEMG00000021247)	ENSPEMG00000026675	ENSPEMG00000030444 #22	Fbxo15 (ENSPEMG00000003160)	Timm21 (ENSPEMG00000024475)	Cyb5a (ENSPEMG00000020270)	Gm17266 (ENSPEMG00000031219)	Dipk1c (ENSPEMG00000019790)	Cndp2 (ENSPEMG00000020038)	Cndp1 (ENSPEMG00000017304)	Zfp407 (ENSPEMG00000019754)	Zadh2 (ENSPEMG00000028418)	Tshz1 (ENSPEMG00000022838)	Zfp516 (ENSPEMG00000024000)	ENSPEMG00000024427	Zfp236 (ENSPEMG00000026320)	Mbp (ENSPEMG00000021451)	Galr1 (ENSPEMG00000022914)
Rodentia	DUPLICATION
Rodentia	ANCESTRAL SPECIES																	ENSGT00390000003248.a.a.a.b.cb.b.a #22
Rodentia_B	ANCESTRAL SPECIES																	ENSGT00390000003248.a.a.a.b.cb.b.a #22
Myomorpha	ANCESTRAL SPECIES																	ENSGT00390000003248.a.a.a.b.cb.b.a #22
Muroidea	ANCESTRAL SPECIES																	ENSGT00390000003248.a.a.a.b.cb.b.a #22
Muroidea_A	ANCESTRAL SPECIES																	ENSGT00390000003248.a.a.a.b.cb.b.a #22
Murinae	ANCESTRAL SPECIES																	ENSGT00390000003248.a.a.a.b.cb.b.a #22
Rat	MODERN SPECIES	15	Reck (ENSRNOG00000014863)	Or13c7 (ENSRNOG00000068857)	Or13c7c (ENSRNOG00000070597)	Or13c7b (ENSRNOG00000063480)	Or13c7e (ENSRNOG00000065792)	Or13c7d (ENSRNOG00000062897)	ENSRNOG00000070391	Hrct1 (ENSRNOG00000039336)	Or13j1 (ENSRNOG00000066545)	Or13e8 (ENSRNOG00000015652)	Tmem8b (ENSRNOG00000015664)	Fam221b (ENSRNOG00000025453)	Hint2 (ENSRNOG00000015866)	Spag8 (ENSRNOG00000032539)	Npr2 (ENSRNOG00000015991)	RGD1562259 (ENSRNOG00000070923) #22	Msmp (ENSRNOG00000043023)	Rgp1 (ENSRNOG00000016309)	Gba2 (ENSRNOG00000016364)	Creb3 (ENSRNOG00000016452)	Tln1 (ENSRNOG00000016630)	Tpm2 (ENSRNOG00000016731)	Car9 (ENSRNOG00000017073)	Arhgef39 (ENSRNOG00000021433)	Ccdc107 (ENSRNOG00000017253)	Sit1 (ENSRNOG00000021546)	RGD1560723 (ENSRNOG00000063741)	Cd72 (ENSRNOG00000017485)	Tesk1 (ENSRNOG00000053729)	Fam166b (ENSRNOG00000065204)	Rusc2 (ENSRNOG00000045843)
Rodentia	ANCESTRAL SPECIES																	ENSGT00390000003248.a.a.a.b.cb.b.b #22
Rodentia_A	ANCESTRAL SPECIES																	ENSGT00390000003248.a.a.a.b.cb.b.b #22
Hystricomorpha	ANCESTRAL SPECIES	12	ENSGT00940000159497	ENSGT00940000155059 #8	ENSGT00940000154502 #9	ENSGT00940000153141.B.a #11	ENSGT00520000055567.a.a.b #12	ENSGT00950000183056.B.b #13	ENSGT00940000160216 #15	ENSGT00950000183149.A #16	ENSGT00940000163618	ENSGT00940000156731 #17	ENSGT00390000001029 #19	ENSGT00940000159246 #20	ENSGT00940000160233 #21	ENSGT00390000003248.a.a.a.b.cb.a.a #22	ENSGT00390000003248.a.b.b ##22	ENSGT00390000003248.a.a.a.b.cb.b.b #22	ENSGT00940000158011 #24	ENSGT00390000018056 #25	ENSGT00390000011782 #26	ENSGT01070000253766.A.b	ENSGT00940000154242.b #27	ENSGT00940000156694	ENSGT00390000009040 #29	ENSGT00940000154185.cb #30	ENSGT00940000155121 #31	ENSGT00940000159123 #32	ENSGT00390000003289 #33	ENSGT00940000157341 #34	ENSGT00940000161936 #35	ENSGT00390000015871.v #36	ENSGT00940000159969.a #37
Hystricomorpha_a	ANCESTRAL SPECIES	9	ENSGT00940000158863	ENSGT00940000159497	ENSGT00940000155059 #8	ENSGT00940000154502 #9	ENSGT00940000153141.B.a #11	ENSGT00520000055567.a.a.b #12	ENSGT00950000183056.B.b #13	ENSGT00940000160216 #15	ENSGT00950000183149.A #16	ENSGT00940000163618	ENSGT00940000156731 #17	ENSGT00390000001029 #19	ENSGT00940000159246 #20	ENSGT00940000160233 #21	ENSGT00390000003248.a.a.a.b.cb.a.a #22	ENSGT00390000003248.a.a.a.b.cb.b.b #22	ENSGT00940000158011 #24	ENSGT00390000018056 #25	ENSGT00390000011782 #26	ENSGT01070000253766.A.b	ENSGT00940000154242.b #27	ENSGT00940000156694	ENSGT00390000009040 #29	ENSGT00940000154185.cb #30	ENSGT00940000155121 #31	ENSGT00940000159123 #32	ENSGT00390000003289 #33	ENSGT00940000157341 #34	ENSGT00940000161936 #35	ENSGT00390000015871.v #36	ENSGT00940000159969.a #37
Hystricomorpha_b	ANCESTRAL SPECIES	27						ENSGT00940000155059 #8	ENSGT00940000154502 #9	ENSGT00940000153141.B.a #11	ENSGT00520000055567.a.a.b #12	ENSGT00940000160216 #15	ENSGT00950000183149.A #16	ENSGT00940000163618	ENSGT00940000156731 #17	ENSGT00390000001029 #19	ENSGT00940000159246 #20	ENSGT00390000003248.a.a.a.b.cb.b.b #22	ENSGT00940000158011 #24	ENSGT00390000018056 #25	ENSGT00390000011782 #26	ENSGT01070000253766.A.b	ENSGT00940000154242.b #27	ENSGT00390000009040 #29	ENSGT00940000154185.bb.a #30	ENSGT00940000155121 #31	ENSGT00940000159123 #32	ENSGT00390000003289 #33	ENSGT00940000157341 #34	ENSGT00940000161936 #35	ENSGT00390000015871.v #36	ENSGT00940000159969.a #37	ENSGT00940000159905
Long-tailed chinchilla	MODERN SPECIES	161						NSMAF (ENSCLAG00000013661) #8	SDCBP (ENSCLAG00000013259) #9	CYP7A1 (ENSCLAG00000012771) #11	UBXN2B (ENSCLAG00000011369) #12	ENSCLAG00000010131 #15	PENK (ENSCLAG00000017733) #16	ENSCLAG00000009495	SDR16C5 (ENSCLAG00000012258) #17	CHCHD7 (ENSCLAG00000009729) #19	PLAG1 (ENSCLAG00000013839) #20	RPS20 (ENSCLAG00000015938) #22	LYN (ENSCLAG00000010085) #24	TGS1 (ENSCLAG00000009468) #25	TMEM68 (ENSCLAG00000009473) #26	XKR4 (ENSCLAG00000010575)	ENSCLAG00000011553 #27	MRPL15 (ENSCLAG00000010064) #29	ENSCLAG00000014943 #30	TCEA1 (ENSCLAG00000013516) #31	ENSCLAG00000016009 #32	ATP6V1H (ENSCLAG00000009337) #33	OPRK1 (ENSCLAG00000009850) #34	ENSCLAG00000009340	RB1CC1 (ENSCLAG00000009807) #36	ENSCLAG00000014346 #37	ST18 (ENSCLAG00000011202)
Rodentia_B	ANCESTRAL SPECIES																	ENSGT00390000003248.a.a.a.b.cb.b.b #22
Myomorpha	ANCESTRAL SPECIES																	ENSGT00390000003248.a.a.a.b.cb.b.b #22
Lesser Egyptian jerboa	MODERN SPECIES	51	Chd7 (ENSJJAG00000022064)	Rab2a (ENSJJAG00000000676)	Car8 (ENSJJAG00000000356)	Tox (ENSJJAG00000023957)	Nsmaf (ENSJJAG00000018732) #8	Sdcbp (ENSJJAG00000008505) #9	Cyp7a1 (ENSJJAG00000009993) #11	Ubxn2b (ENSJJAG00000017241) #12	Fam110b (ENSJJAG00000011482) #13	Bpnt2 (ENSJJAG00000016357) #15	Penk (ENSJJAG00000012141) #16	Sdr16c6 (ENSJJAG00000005653)	Sdr16c5 (ENSJJAG00000012889) #17	Chchd7 (ENSJJAG00000004951) #19	Plag1 (ENSJJAG00000008706) #20	ENSJJAG00000000512 #22	Lyn (ENSJJAG00000014669) #24	Tgs1 (ENSJJAG00000016239) #25	Tmem68 (ENSJJAG00000009727) #26	ENSJJAG00000003859	Xkr4 (ENSJJAG00000013870)	ENSJJAG00000015642 #27	ENSJJAG00000012132	Sox17 (ENSJJAG00000021381)	Mrpl15 (ENSJJAG00000016599) #29	ENSJJAG00000019339 #30	Tcea1 (ENSJJAG00000020282) #31	Rgs20 (ENSJJAG00000004359) #32	Atp6v1h (ENSJJAG00000018257) #33	Oprk1 (ENSJJAG00000019887) #34	ENSJJAG00000011904
Muroidea	ANCESTRAL SPECIES																	ENSGT00390000003248.a.a.a.b.cb.b.b #22
Muroidea_A	ANCESTRAL SPECIES																	ENSGT00390000003248.a.a.a.b.cb.b.b #22
Cricetidae	ANCESTRAL SPECIES																	ENSGT00390000003248.a.a.a.b.cb.b.b #22
Cricetidae_B	ANCESTRAL SPECIES																	ENSGT00390000003248.a.a.a.b.cb.b.b #22
Prairie vole	MODERN SPECIES	356	Spata4 (ENSMOCG00000003714)	Asb5 (ENSMOCG00000022930)	Spcs3 (ENSMOCG00000022872)	Vegfc (ENSMOCG00000021548)	ENSMOCG00000007262	ENSMOCG00000018728	Aga (ENSMOCG00000014844)	Tenm3 (ENSMOCG00000020342)	Dctd (ENSMOCG00000015038)	ENSMOCG00000005387	ENSMOCG00000003820	Cldn22 (ENSMOCG00000006954)	ENSMOCG00000008252	Cdkn2aip (ENSMOCG00000016713)	Ing2 (ENSMOCG00000005078)	ENSMOCG00000004967 #22	Rwdd4a (ENSMOCG00000002163)	Trappc11 (ENSMOCG00000015798)	Stox2 (ENSMOCG00000006233)	Enpp6 (ENSMOCG00000021517)	Irf2 (ENSMOCG00000013068)	Casp3 (ENSMOCG00000011756)	Primpol (ENSMOCG00000006815)	Cenpu (ENSMOCG00000004846)	Acsl1 (ENSMOCG00000008489)	Helt (ENSMOCG00000012330)	ENSMOCG00000009524	Cfap97 (ENSMOCG00000005943)	Snx25 (ENSMOCG00000012866)	Lrp2bp (ENSMOCG00000014647)	Ankrd37 (ENSMOCG00000011842)
Murinae	ANCESTRAL SPECIES																	ENSGT00390000003248.a.a.a.b.cb.b.b #22
Rat	MODERN SPECIES	18	Htr1b (ENSRNOG00000013042)	Mei4 (ENSRNOG00000023794)	Irak1bp1 (ENSRNOG00000008984)	Phip (ENSRNOG00000008652)	Hmgn3 (ENSRNOG00000031032)	Lca5 (ENSRNOG00000009580)	Sh3bgrl2 (ENSRNOG00000009613)	Sh3bgrl2 (ENSRNOG00000068670)	ENSRNOG00000066197	Elovl4 (ENSRNOG00000009773)	Ttk (ENSRNOG00000029055)	Bckdhb (ENSRNOG00000009928)	RGD1560917 (ENSRNOG00000034128)	Tent5a (ENSRNOG00000010240)	Ibtk (ENSRNOG00000027728)	LOC100359563 (ENSRNOG00000029843) #22	Tpbg (ENSRNOG00000010694)	Ube3d (ENSRNOG00000010802)	Dop1a (ENSRNOG00000022847)	Pgm3 (ENSRNOG00000009515)	Rwdd2a (ENSRNOG00000009599)	Me1 (ENSRNOG00000009715)	Prss35 (ENSRNOG00000025184)	Snap91 (ENSRNOG00000023861)	Ripply2 (ENSRNOG00000010004)	Cyb5r4 (ENSRNOG00000010024)	Mrap2 (ENSRNOG00000010545)	Cep162 (ENSRNOG00000010608)	Tbx18 (ENSRNOG00000010685)	Gabarapl2 (ENSRNOG00000051416)	Nt5e (ENSRNOG00000011071)
Rodentia	ANCESTRAL SPECIES	19	ENSGT00940000153886.a.b.f	ENSGT00940000158863	ENSGT00940000159497	ENSGT00940000155059 #8	ENSGT00940000154502 #9	ENSGT00940000153141.B.a #11	ENSGT00520000055567.a.a.b #12	ENSGT00950000183056.B.b #13	ENSGT00940000160216 #15	ENSGT00950000183149.A #16	ENSGT00940000163618	ENSGT00940000156731 #17	ENSGT00390000001029 #19	ENSGT00940000159246 #20	ENSGT00940000160233 #21	ENSGT00390000003248.a.a.a.b.db #22	ENSGT00940000158011 #24	ENSGT00390000018056 #25	ENSGT00390000011782 #26	ENSGT01070000253766.A.b	ENSGT00940000164647	ENSGT00940000154242.b #27	ENSGT00940000156694	ENSGT00390000009040 #29	ENSGT00940000154185 #30	ENSGT00940000155121 #31	ENSGT00940000159123 #32	ENSGT00390000003289 #33	ENSGT00940000157341 #34	ENSGT00940000161936 #35	ENSGT00390000015871 #36
Rodentia_B	ANCESTRAL SPECIES	17	ENSGT00940000153886.a.b.f	ENSGT00940000158863	ENSGT00940000159497	ENSGT00940000155059 #8	ENSGT00940000154502 #9	ENSGT00940000153141.B.a #11	ENSGT00520000055567.a.a.b #12	ENSGT00950000183056.B.b #13	ENSGT00940000160216 #15	ENSGT00950000183149.A #16	ENSGT00940000163618	ENSGT00940000156731 #17	ENSGT00390000001029 #19	ENSGT00940000159246 #20	ENSGT00940000160233 #21	ENSGT00390000003248.a.a.a.b.db #22	ENSGT00940000158011 #24	ENSGT00390000018056 #25	ENSGT00390000011782 #26	ENSGT01070000253766.A.b	ENSGT00940000164647	ENSGT00940000154242.b #27	ENSGT00940000156694	ENSGT00390000009040 #29	ENSGT00940000154185 #30	ENSGT00940000155121 #31	ENSGT00940000159123 #32	ENSGT00390000003289 #33	ENSGT00940000157341 #34	ENSGT00940000161936 #35	ENSGT00390000015871 #36
Kangaroo rat	MODERN SPECIES	328	Nsmaf (ENSDORG00000006742) #8	Sdcbp (ENSDORG00000006741) #9	Cyp7a1 (ENSDORG00000004649) #11	Ubxn2b (ENSDORG00000005860) #12	ENSDORG00000026451	Fam110b (ENSDORG00000015721) #13	ENSDORG00000025951	Bpnt2 (ENSDORG00000015489) #15	Penk (ENSDORG00000011721) #16	Sdr16c6 (ENSDORG00000026488)	Sdr16c5 (ENSDORG00000004594) #17	ENSDORG00000025931	Chchd7 (ENSDORG00000004592) #19	Plag1 (ENSDORG00000011524) #20	ENSDORG00000029409	Rps20 (ENSDORG00000005794) #22	Lyn (ENSDORG00000000747) #24	Tgs1 (ENSDORG00000012484) #25	ENSDORG00000012483 #26	Xkr4 (ENSDORG00000005763)	Rp1 (ENSDORG00000009139) #27	Sox17 (ENSDORG00000027735)	Mrpl15 (ENSDORG00000012200) #29	Lypla1 (ENSDORG00000001479) #30	Tcea1 (ENSDORG00000015058) #31	ENSDORG00000006333 #32	Atp6v1h (ENSDORG00000007689) #33	Oprk1 (ENSDORG00000009506) #34	Npbwr1 (ENSDORG00000013949) #35	ENSDORG00000005679 #36	ENSDORG00000029422 #36
Myomorpha	ANCESTRAL SPECIES	18	ENSGT00940000153886.a.b.f	ENSGT00940000158863	ENSGT00940000159497	ENSGT00940000155059 #8	ENSGT00940000154502 #9	ENSGT00940000153141.B.a #11	ENSGT00520000055567.a.a.b #12	ENSGT00950000183056.B.b #13	ENSGT00940000160216 #15	ENSGT00950000183149.A #16	ENSGT00940000163618	ENSGT00940000156731 #17	ENSGT00390000001029 #19	ENSGT00940000159246 #20	ENSGT00940000160233 #21	ENSGT00390000003248.a.a.a.b.db #22	ENSGT00940000158011 #24	ENSGT00390000018056 #25	ENSGT00390000011782 #26	ENSGT01070000253766.A.b	ENSGT00940000164647	ENSGT00940000154242.b #27	ENSGT00940000156694	ENSGT00390000009040 #29	ENSGT00940000154185 #30	ENSGT00940000155121 #31	ENSGT00940000159123 #32	ENSGT00390000003289 #33	ENSGT00940000157341 #34	ENSGT00940000161936 #35	ENSGT00390000015871 #36
Lesser Egyptian jerboa	MODERN SPECIES	144	Hipk1 (ENSJJAG00000023146)	Olfml3 (ENSJJAG00000021371)	Syt6 (ENSJJAG00000020309)	Trim33 (ENSJJAG00000012942)	ENSJJAG00000007313	Dennd2c (ENSJJAG00000009709)	Ampd1 (ENSJJAG00000021675)	ENSJJAG00000020941	Csde1 (ENSJJAG00000019571) #28	ENSJJAG00000019089	Nr1h5 (ENSJJAG00000018578)	ENSJJAG00000018067	Tshb (ENSJJAG00000001329)	Tspan2 (ENSJJAG00000000832)	Ngf (ENSJJAG00000022901)	ENSJJAG00000021722 #22	Vangl1 (ENSJJAG00000021462)	Casq2 (ENSJJAG00000020862)	Nhlh2 (ENSJJAG00000019983)	Slc22a15 (ENSJJAG00000000255)	Mab21l3 (ENSJJAG00000022482)	Atp1a1 (ENSJJAG00000020791)	Igsf3 (ENSJJAG00000017489)	Cd2 (ENSJJAG00000019842)	Ptgfrn (ENSJJAG00000019616)	Ttf2 (ENSJJAG00000015225)	Trim45 (ENSJJAG00000007227)	Vtcn1 (ENSJJAG00000019207)	ENSJJAG00000018170	Man1a2 (ENSJJAG00000017865)	Tent5c (ENSJJAG00000013174)
Muroidea	ANCESTRAL SPECIES	14	ENSGT00940000153886.a.b.f	ENSGT00940000158863	ENSGT00940000159497	ENSGT00940000155059 #8	ENSGT00940000154502 #9	ENSGT00940000153141.B.a #11	ENSGT00520000055567.a.a.b #12	ENSGT00950000183056.B.b #13	ENSGT00940000160216 #15	ENSGT00950000183149.A #16	ENSGT00940000163618	ENSGT00940000156731 #17	ENSGT00390000001029 #19	ENSGT00940000159246 #20	ENSGT00940000160233 #21	ENSGT00390000003248.a.a.a.b.db #22	ENSGT00940000158011 #24	ENSGT00390000018056 #25	ENSGT00390000011782 #26	ENSGT01070000253766.A.b	ENSGT00940000164647	ENSGT00940000154242.b #27	ENSGT00940000156694	ENSGT00390000009040 #29	ENSGT00940000154185 #30	ENSGT00940000155121 #31	ENSGT00940000159123 #32	ENSGT00390000003289 #33	ENSGT00940000157341 #34	ENSGT00940000161936 #35	ENSGT00390000015871 #36
Muroidea_A	ANCESTRAL SPECIES	3	ENSGT00940000158863	ENSGT00940000159497	ENSGT00940000155059 #8	ENSGT00940000154502 #9	ENSGT00940000153141.B.a #11	ENSGT00520000055567.a.a.b #12	ENSGT00950000183056.B.b #13	ENSGT00940000160216 #15	ENSGT00940000154383.s.a	ENSGT00950000183149.A #16	ENSGT00940000163618	ENSGT00940000156731 #17	ENSGT00390000001029 #19	ENSGT00940000159246 #20	ENSGT00940000160233 #21	ENSGT00390000003248.a.a.a.b.db #22	ENSGT00940000158011 #24	ENSGT00390000018056 #25	ENSGT00390000011782 #26	ENSGT01070000253766.A.b	ENSGT00940000164647	ENSGT00940000154242.b #27	ENSGT00940000156694	ENSGT00390000009040 #29	ENSGT00940000154185 #30	ENSGT00940000155121 #31	ENSGT00940000159123 #32	ENSGT00390000003289 #33	ENSGT00940000157341 #34	ENSGT00940000161936 #35	ENSGT00390000015871 #36
Murinae	ANCESTRAL SPECIES	2	ENSGT00940000158863	ENSGT00940000159497	ENSGT00940000155059 #8	ENSGT00940000154502 #9	ENSGT00940000153141.B.a #11	ENSGT00520000055567.a.a.b #12	ENSGT00950000183056.B.b #13	ENSGT00940000160216 #15	ENSGT00940000154383.s.a	ENSGT00950000183149.A #16	ENSGT00940000163618	ENSGT00940000156731 #17	ENSGT00390000001029 #19	ENSGT00940000159246 #20	ENSGT00940000160233 #21	ENSGT00390000003248.a.a.a.b.db #22	ENSGT00940000158011 #24	ENSGT00390000018056 #25	ENSGT00390000011782 #26	ENSGT01070000253766.A.b	ENSGT00940000154242.b #27	ENSGT00940000156694	ENSGT00390000009040 #29	ENSGT00940000154185 #30	ENSGT00940000155121 #31	ENSGT00940000159123 #32	ENSGT00390000003289 #33	ENSGT00940000157341 #34	ENSGT00940000161936 #35	ENSGT00390000015871 #36	ENSGT00940000159969.a #37
Rat	DUPLICATION
Rat	MODERN SPECIES	15	Tmem82 (ENSRNOG00000011970)	Plekhm2 (ENSRNOG00000012163)	Ddi2 (ENSRNOG00000012274)	Agmat (ENSRNOG00000012315)	Dnajc16 (ENSRNOG00000012503)	Casp9 (ENSRNOG00000012944)	Cela2a (ENSRNOG00000013628)	Ctrc (ENSRNOG00000013745)	Efhd2 (ENSRNOG00000013783)	Fhad1 (ENSRNOG00000028064)	Tmem51 (ENSRNOG00000014197)	ENSRNOG00000070661	Kazn (ENSRNOG00000014322)	6330411D24Rik (ENSRNOG00000065736)	Prdm2 (ENSRNOG00000033522)	LOC100359951 (ENSRNOG00000071148) #22	ENSRNOG00000070725	Pdpn (ENSRNOG00000014961)	Lrrc38 (ENSRNOG00000015264)	Pramef27 (ENSRNOG00000027328)	Pramef8 (ENSRNOG00000027278)	Oog3 (ENSRNOG00000033000)	Pramef5 (ENSRNOG00000067307)	ENSRNOG00000065869	Oog1 (ENSRNOG00000027142)	LOC120103107 (ENSRNOG00000047341)	RGD1306186 (ENSRNOG00000037039)	Pramef17 (ENSRNOG00000042820)	Pramef25 (ENSRNOG00000027000)	Pramef20 (ENSRNOG00000053942)	Pramef12 (ENSRNOG00000037035)
Rat	MODERN SPECIES	10	Tat (ENSRNOG00000016348)	Marveld3 (ENSRNOG00000016291)	Phlpp2 (ENSRNOG00000016108)	Ap1g1 (ENSRNOG00000069458)	Atxn1l (ENSRNOG00000038766)	Zfp821 (ENSRNOG00000000262)	Ist1 (ENSRNOG00000015144)	Pkd1l3 (ENSRNOG00000052310)	Dhodh (ENSRNOG00000015063)	Hp (ENSRNOG00000014964)	ENSRNOG00000063716	Txnl4b (ENSRNOG00000021379)	Dhx38 (ENSRNOG00000014619)	Pmfbp1 (ENSRNOG00000014505)	Zfhx3 (ENSRNOG00000014452)	LOC679899 (ENSRNOG00000069342) #22	Psmd7 (ENSRNOG00000014097)	Wwp2 (ENSRNOG00000012937)	Nob1 (ENSRNOG00000021890)	Nqo1 (ENSRNOG00000012772)	Nfat5 (ENSRNOG00000011879)	Cyb5b (ENSRNOG00000011142)	Terf2 (ENSRNOG00000020435)	Tmed6 (ENSRNOG00000020406)	Nip7 (ENSRNOG00000020391)	Cog8 (ENSRNOG00000020379)	Pdf (ENSRNOG00000022303)	Vps4a (ENSRNOG00000020351)	Sntb2 (ENSRNOG00000020344)	Utp4 (ENSRNOG00000020333)	Chtf8 (ENSRNOG00000047246)
Mus	ANCESTRAL SPECIES	3	ENSGT00940000158863	ENSGT00940000159497	ENSGT00940000155059 #8	ENSGT00940000154502 #9	ENSGT00940000153141.B.a #11	ENSGT00520000055567.a.a.b #12	ENSGT00950000183056.B.b #13	ENSGT00940000160216 #15	ENSGT00940000154383.s.a	ENSGT00950000183149.A #16	ENSGT00940000163618	ENSGT00940000156731 #17	ENSGT00390000001029 #19	ENSGT00940000159246 #20	ENSGT00940000160233 #21	ENSGT00390000003248.a.a.a.b.db #22	ENSGT00940000158011 #24	ENSGT00390000018056 #25	ENSGT01100000265193	ENSGT01070000253766.A.b	ENSGT00940000154242.b #27	ENSGT00940000156694	ENSGT00390000009040 #29	ENSGT00940000154185 #30	ENSGT00940000155121 #31	ENSGT00940000159123 #32	ENSGT00390000003289 #33	ENSGT00940000157341 #34	ENSGT00940000161936 #35	ENSGT00390000015871 #36	ENSGT00940000159969.a #37
Shrew mouse	MODERN SPECIES	14	Rab2a (MGP_PahariEiJ_G0023919)	Car8 (MGP_PahariEiJ_G0023918)	Tox (MGP_PahariEiJ_G0023917)	Nsmaf (MGP_PahariEiJ_G0023916) #8	Sdcbp (MGP_PahariEiJ_G0023915) #9	Cyp7a1 (MGP_PahariEiJ_G0023914) #11	Ubxn2b (MGP_PahariEiJ_G0023913) #12	Fam110b (MGP_PahariEiJ_G0023912) #13	Bpnt2 (MGP_PahariEiJ_G0023911) #15	Penk (MGP_PahariEiJ_G0023910) #16	Sdr16c6 (MGP_PahariEiJ_G0023909)	Sdr16c5 (MGP_PahariEiJ_G0023908) #17	Chchd7 (MGP_PahariEiJ_G0023907) #19	Plag1 (MGP_PahariEiJ_G0023906) #20	Mos (MGP_PahariEiJ_G0023905) #21	Rps20 (MGP_PahariEiJ_G0023904) #22	Lyn (MGP_PahariEiJ_G0023903) #24	MGP_PahariEiJ_G0023902 #25	MGP_PahariEiJ_G0023901 #25	MGP_PahariEiJ_G0023900	Xkr4 (MGP_PahariEiJ_G0023899)	Rp1 (MGP_PahariEiJ_G0023898) #27	Sox17 (MGP_PahariEiJ_G0023897)	Mrpl15 (MGP_PahariEiJ_G0023896) #29	Lypla1 (MGP_PahariEiJ_G0023895) #30	MGP_PahariEiJ_G0023894	Tcea1 (MGP_PahariEiJ_G0023893) #31	Rgs20 (MGP_PahariEiJ_G0023892) #32	Atp6v1h (MGP_PahariEiJ_G0023891) #33	Oprk1 (MGP_PahariEiJ_G0023890) #34	Npbwr1 (MGP_PahariEiJ_G0023889) #35
Mus_A	ANCESTRAL SPECIES	3	ENSGT00940000158863	ENSGT00940000159497	ENSGT00940000155059 #8	ENSGT00940000154502 #9	ENSGT00940000153141.B.a #11	ENSGT00520000055567.a.a.b #12	ENSGT00950000183056.B.b #13	ENSGT00940000160216 #15	ENSGT00940000154383.s.a	ENSGT00950000183149.A #16	ENSGT00940000163618	ENSGT00940000156731 #17	ENSGT00390000001029 #19	ENSGT00940000159246 #20	ENSGT00940000160233 #21	ENSGT00390000003248.a.a.a.b.db #22	ENSGT00940000158011 #24	ENSGT00390000018056.f #25	ENSGT00390000011782 #26
Ryukyu mouse	MODERN SPECIES	13	Rab2a (MGP_CAROLIEiJ_G0025796)	Car8 (MGP_CAROLIEiJ_G0025795)	Tox (MGP_CAROLIEiJ_G0025794)	Nsmaf (MGP_CAROLIEiJ_G0025793) #8	Sdcbp (MGP_CAROLIEiJ_G0025792) #9	Cyp7a1 (MGP_CAROLIEiJ_G0025791) #11	Ubxn2b (MGP_CAROLIEiJ_G0025790) #12	Fam110b (MGP_CAROLIEiJ_G0025789) #13	Bpnt2 (MGP_CAROLIEiJ_G0025788) #15	Penk (MGP_CAROLIEiJ_G0025787) #16	Sdr16c6 (MGP_CAROLIEiJ_G0025786)	Sdr16c5 (MGP_CAROLIEiJ_G0025785) #17	Chchd7 (MGP_CAROLIEiJ_G0025784) #19	Plag1 (MGP_CAROLIEiJ_G0025783) #20	Mos (MGP_CAROLIEiJ_G0025782) #21	Rps20 (MGP_CAROLIEiJ_G0025781) #22	MGP_CAROLIEiJ_G0025780 #25	MGP_CAROLIEiJ_G0025779 #25	Tmem68 (MGP_CAROLIEiJ_G0025778) #26
Mus_B	ANCESTRAL SPECIES	22	ENSGT00940000159497	ENSGT00940000155059 #8	ENSGT00940000154502 #9	ENSGT00940000153141.B.a #11	ENSGT00520000055567.a.a.b #12	ENSGT00950000183056.B.b #13	ENSGT00940000160216 #15	ENSGT00940000154383.s.a	ENSGT00950000183149.A #16	ENSGT00940000163618	ENSGT00940000156731 #17	ENSGT00390000001029 #19	ENSGT00940000159246 #20	ENSGT00940000160233 #21	ENSGT00390000003248.a.a.a.b.cb.a.a #22	ENSGT00390000003248.a.a.a.b.db #22	ENSGT00940000158011 #24	ENSGT00390000018056.f #25	ENSGT00390000011782 #26
Mus_C	ANCESTRAL SPECIES																	ENSGT00390000003248.a.a.a.b.db #22
Steppe mouse	MODERN SPECIES	3284													ENSMSIG00000003831	Naaladl2 (ENSMSIG00000003840)	ENSMSIG00000003888	ENSMSIG00000003917 #22	Tbl1xr1 (ENSMSIG00000003957)
Mouse	MODERN SPECIES	13	Car8 (ENSMUSG00000041261)	Tox (ENSMUSG00000041272)	Nsmaf (ENSMUSG00000028245) #8	Sdcbp (ENSMUSG00000028249) #9	Cyp7a1 (ENSMUSG00000028240) #11	Ubxn2b (ENSMUSG00000028243) #12	Fam110b (ENSMUSG00000049119) #13	Bpnt2 (ENSMUSG00000066324) #15	Penk (ENSMUSG00000045573) #16	Sdr16c6 (ENSMUSG00000071019)	Sdr16c5 (ENSMUSG00000028236) #17	Gm11808 (ENSMUSG00000068240)	Chchd7 (ENSMUSG00000042198) #19	Plag1 (ENSMUSG00000003282) #20	Mos (ENSMUSG00000078365) #21	Rps20 (ENSMUSG00000028234) #22	Lyn (ENSMUSG00000042228) #24	Tgs1 (ENSMUSG00000028233) #25	Tmem68 (ENSMUSG00000028232) #26	Vmn1r3 (ENSMUSG00000115466)	Vmn1r2 (ENSMUSG00000115072)
Cricetidae	DUPLICATION
Cricetidae	DUPLICATION
Cricetidae	ANCESTRAL SPECIES																	ENSGT00390000003248.a.a.a.b.db.c.a #22
Cricetidae_B	ANCESTRAL SPECIES																	ENSGT00390000003248.a.a.a.b.db.c.a #22
Prairie vole	DUPLICATION
Prairie vole	MODERN SPECIES	2	Cyp11b2 (ENSMOCG00000001733)	Cyp11b1 (ENSMOCG00000020170)	ENSMOCG00000015409	ENSMOCG00000008187	Nell2 (ENSMOCG00000002600)	Ano6 (ENSMOCG00000018323)	ENSMOCG00000016077	ENSMOCG00000019972	Scaf11 (ENSMOCG00000000678)	Slc38a1 (ENSMOCG00000006739)	Slc38a2 (ENSMOCG00000003601)	Slc38a4 (ENSMOCG00000015247)	Amigo2 (ENSMOCG00000013021)	Pced1b (ENSMOCG00000005496)	Rpap3 (ENSMOCG00000021033)	ENSMOCG00000005623 #22	Endou (ENSMOCG00000015012)	Rapgef3 (ENSMOCG00000002335)	Slc48a1 (ENSMOCG00000013448)	Hdac7 (ENSMOCG00000019731)	ENSMOCG00000013472	Tmem106c (ENSMOCG00000016714)	Col2a1 (ENSMOCG00000014833)	ENSMOCG00000002706	ENSMOCG00000015383	Pfkm (ENSMOCG00000021333)	Asb8 (ENSMOCG00000017776)	Ccdc184 (ENSMOCG00000003788)	ENSMOCG00000001175	ENSMOCG00000001245	Zfp641 (ENSMOCG00000019174)
Prairie vole	MODERN SPECIES	9	Tyr (ENSMOCG00000014094)	ENSMOCG00000019618	Grm5 (ENSMOCG00000007786)	Ctsc (ENSMOCG00000014577)	Rab38 (ENSMOCG00000017329)	Tmem135 (ENSMOCG00000018801)	Fzd4 (ENSMOCG00000003180)	ENSMOCG00000004372	Hddc3 (ENSMOCG00000010323)	ENSMOCG00000017504	ENSMOCG00000012208	Fes (ENSMOCG00000015972)	Furin (ENSMOCG00000010449)	Blm (ENSMOCG00000016367)	Crtc3 (ENSMOCG00000013330)	ENSMOCG00000018309 #22	Iqgap1 (ENSMOCG00000008969)	Zscan2 (ENSMOCG00000014314)	Wdr73 (ENSMOCG00000015177)	Nmb (ENSMOCG00000017100)	Sec11a (ENSMOCG00000005585)	Zfp592 (ENSMOCG00000019221)	Alpk3 (ENSMOCG00000021545)	Slc28a1 (ENSMOCG00000008190)	Pde8a (ENSMOCG00000005246)	Rps17 (ENSMOCG00000018582)	Cpeb1 (ENSMOCG00000006902)	Ap3b2 (ENSMOCG00000007121)	BC048679 (ENSMOCG00000000682)	ENSMOCG00000009343	Fsd2 (ENSMOCG00000015179)
Cricetidae	ANCESTRAL SPECIES																	ENSGT00390000003248.a.a.a.b.db.c.b #22
Cricetidae_B	ANCESTRAL SPECIES																	ENSGT00390000003248.a.a.a.b.db.c.b #22
Prairie vole	MODERN SPECIES	355	ENSMOCG00000005603	Tmem67 (ENSMOCG00000011860)	Pdp1 (ENSMOCG00000014340)	Cdh17 (ENSMOCG00000010844)	Gem (ENSMOCG00000006722)	Fsbp (ENSMOCG00000008704)	Rad54b (ENSMOCG00000020035)	Virma (ENSMOCG00000015388)	Esrp1 (ENSMOCG00000013567)	Dpy19l4 (ENSMOCG00000007197)	Ints8 (ENSMOCG00000017112)	Ccne2 (ENSMOCG00000001638)	Trp53inp1 (ENSMOCG00000021132)	Ndufaf6 (ENSMOCG00000015272)	Plekhf2 (ENSMOCG00000002768)	ENSMOCG00000002359 #22	Cfap418 (ENSMOCG00000019280)	ENSMOCG00000000256	Gdf6 (ENSMOCG00000021011)	Asph (ENSMOCG00000013819)	Clvs1 (ENSMOCG00000013201)	ENSMOCG00000010657	Chd7 (ENSMOCG00000011408)	Rab2a (ENSMOCG00000014140)	Car8 (ENSMOCG00000018985)	Tox (ENSMOCG00000013368)	Nsmaf (ENSMOCG00000018628) #8	ENSMOCG00000014994 #9	Cyp7a1 (ENSMOCG00000004265) #11	Ubxn2b (ENSMOCG00000009288) #12	Fam110b (ENSMOCG00000010757) #13
Cricetinae	ANCESTRAL SPECIES																	ENSGT00390000003248.a.a.a.b.db.c.b #22
Chinese hamster chok1gshd	MODERN SPECIES	54	ENSCGRG00001013970	ENSCGRG00001004842	Nxph1 (ENSCGRG00001017708)	Ica1 (ENSCGRG00001013759)	Glcci1 (ENSCGRG00001020867)	Umad1 (ENSCGRG00001019337)	Rpa3 (ENSCGRG00001004183)	Mios (ENSCGRG00001022654)	Col28a1 (ENSCGRG00001018669)	ENSCGRG00001016873	ASNS (ENSCGRG00001015428)	Tac1 (ENSCGRG00001020738)	Sdhaf3 (ENSCGRG00001012553)	Dlx5 (ENSCGRG00001001362)	Dlx6 (ENSCGRG00001015244)	ENSCGRG00001016396 #22	Sem1 (ENSCGRG00001000539)	ENSCGRG00001023047	Slc25a13 (ENSCGRG00001024718)	ENSCGRG00001003096	ENSCGRG00001022786	Pdk4 (ENSCGRG00001014183)	Asb4 (ENSCGRG00001002568)	Pon2 (ENSCGRG00001017926)	Pon3 (ENSCGRG00001017513)	Pon1 (ENSCGRG00001017580)	ENSCGRG00001022001	ENSCGRG00001012942	ENSCGRG00001010002	Sgce (ENSCGRG00001021015)	Casd1 (ENSCGRG00001001133)
Cricetidae	ANCESTRAL SPECIES	2	ENSGT00940000158863	ENSGT00940000159497	ENSGT00940000155059 #8	ENSGT00940000154502 #9	ENSGT00940000153141.B.a #11	ENSGT00520000055567.a.a.b #12	ENSGT00950000183056.B.b #13	ENSGT00940000160216 #15	ENSGT00940000154383.s.a	ENSGT00950000183149.A #16	ENSGT00940000163618	ENSGT00940000156731 #17	ENSGT00390000001029 #19	ENSGT00940000159246 #20	ENSGT00940000160233 #21	ENSGT00390000003248.a.a.a.b.db.d #22	ENSGT00940000158011 #24	ENSGT00390000018056 #25	ENSGT00390000011782 #26	ENSGT01070000253766.A.b	ENSGT00940000164647	ENSGT00940000154242.b #27	ENSGT00940000156694	ENSGT00390000009040 #29	ENSGT00940000154185 #30	ENSGT00940000155121 #31	ENSGT00940000159123 #32	ENSGT00390000003289 #33	ENSGT00940000157341 #34	ENSGT00940000161936 #35	ENSGT00390000015871 #36
Cricetinae	ANCESTRAL SPECIES	31	ENSGT00940000153886.a.b.f	ENSGT00940000158863	ENSGT00940000159497	ENSGT00940000155059 #8	ENSGT00940000154502 #9	ENSGT00940000153141.B.a #11	ENSGT00520000055567.a.a.b #12	ENSGT00950000183056.B.b #13	ENSGT00940000160216 #15	ENSGT00950000183149.A #16	ENSGT00940000163618	ENSGT00940000156731 #17	ENSGT00390000001029 #19	ENSGT00940000159246 #20	ENSGT00940000160233 #21	ENSGT00390000003248.a.a.a.b.db.d #22	ENSGT00940000158011 #24	ENSGT00390000018056 #25	ENSGT00390000011782 #26	ENSGT01070000253766.A.b	ENSGT00940000164647	ENSGT00940000154242.b #27	ENSGT00940000156694	ENSGT00390000009040 #29	ENSGT00940000154185 #30	ENSGT00940000155121 #31	ENSGT00940000159123 #32	ENSGT00390000003289 #33	ENSGT00940000157341 #34	ENSGT00940000161936 #35	ENSGT00390000015871 #36
Chinese hamster chok1gshd	MODERN SPECIES	136	Car8 (ENSCGRG00001016884)	ENSCGRG00001015202	Tox (ENSCGRG00001012296)	Nsmaf (ENSCGRG00001000418) #8	Sdcbp (ENSCGRG00001024052) #9	Cyp7a1 (ENSCGRG00001023767) #11	Ubxn2b (ENSCGRG00001022571) #12	Fam110b (ENSCGRG00001016576) #13	Bpnt2 (ENSCGRG00001020859) #15	Penk (ENSCGRG00001017327) #16	Sdr16c6 (ENSCGRG00001015002)	Sdr16c5 (ENSCGRG00001012918) #17	Chchd7 (ENSCGRG00001011586) #19	Plag1 (ENSCGRG00001007120) #20	Mos (ENSCGRG00001001977) #21	ENSCGRG00001010356 #22	Lyn (ENSCGRG00001023003) #24	Tgs1 (ENSCGRG00001019470) #25	Tmem68 (ENSCGRG00001014894) #26	ENSCGRG00001014282	ENSCGRG00001013815	ENSCGRG00001010786 #27	Sox17 (ENSCGRG00001009950)	ENSCGRG00001020498 #29	ENSCGRG00001016962 #30	ENSCGRG00001000991 #31	Rgs20 (ENSCGRG00001023847) #32	Atp6v1h (ENSCGRG00001018456) #33	Oprk1 (ENSCGRG00001014321) #34	ENSCGRG00001013124	Npbwr1 (ENSCGRG00001001773) #35
Cricetidae_B	ANCESTRAL SPECIES	50	ENSGT00940000159497	ENSGT00940000155059 #8	ENSGT00940000154502 #9	ENSGT00940000153141.B.a #11	ENSGT00520000055567.a.a.b #12	ENSGT00950000183056.B.b #13	ENSGT00940000160216 #15	ENSGT00940000154383.s.a	ENSGT00950000183149.A #16	ENSGT00940000163618	ENSGT00940000156731 #17	ENSGT00390000001029 #19	ENSGT00940000159246 #20	ENSGT00940000160233 #21	ENSGT00390000003248.a.a.a.b.cb.a.a #22	ENSGT00390000003248.a.a.a.b.db.d #22	ENSGT00940000158011 #24	ENSGT00390000018056 #25	ENSGT00390000011782 #26	ENSGT01070000253766.A.b	ENSGT00940000154242.b #27	ENSGT00940000156694	ENSGT00390000009040 #29	ENSGT00940000154185 #30	ENSGT00940000155121 #31	ENSGT00940000159123 #32	ENSGT00390000003289 #33	ENSGT00940000157341 #34	ENSGT00940000161936 #35	ENSGT00390000015871 #36	ENSGT00940000159969.a #37
Prairie vole	DUPLICATION
Prairie vole	MODERN SPECIES	12	Zfp821 (ENSMOCG00000021660)	Ist1 (ENSMOCG00000001146)	Pkd1l3 (ENSMOCG00000021954)	ENSMOCG00000017444	ENSMOCG00000011833	Hp (ENSMOCG00000022096)	Txnl4b (ENSMOCG00000013902)	Dhx38 (ENSMOCG00000016798)	Pmfbp1 (ENSMOCG00000008708)	Zfhx3 (ENSMOCG00000017998)	Psmd7 (ENSMOCG00000018363)	Wwp2 (ENSMOCG00000019211)	Nob1 (ENSMOCG00000010370)	ENSMOCG00000009352	Cntnap4 (ENSMOCG00000005286)	ENSMOCG00000010395 #22	Mon1b (ENSMOCG00000003753)	Syce1l (ENSMOCG00000022883)	Adamts18 (ENSMOCG00000015505)	ENSMOCG00000010114	Nudt7 (ENSMOCG00000015530)	Vat1l (ENSMOCG00000018479)	Clec3a (ENSMOCG00000016149)	Wwox (ENSMOCG00000013122)	Maf (ENSMOCG00000017607)	Dynlrb2 (ENSMOCG00000016123)	Cdyl2 (ENSMOCG00000021578)	ENSMOCG00000007353	Cenpn (ENSMOCG00000011952)	Atmin (ENSMOCG00000020741)	1700030J22Rik (ENSMOCG00000021044)
Prairie vole	MODERN SPECIES	20																ENSMOCG00000000517 #22
Prairie vole	MODERN SPECIES	355	Rab2a (ENSMOCG00000014140)	Car8 (ENSMOCG00000018985)	Tox (ENSMOCG00000013368)	Nsmaf (ENSMOCG00000018628) #8	ENSMOCG00000014994 #9	Cyp7a1 (ENSMOCG00000004265) #11	Ubxn2b (ENSMOCG00000009288) #12	Fam110b (ENSMOCG00000010757) #13	Bpnt2 (ENSMOCG00000015732) #15	ENSMOCG00000003270	Penk (ENSMOCG00000005168) #16	Sdr16c6 (ENSMOCG00000012126)	Sdr16c5 (ENSMOCG00000002710) #17	Chchd7 (ENSMOCG00000015783) #19	Plag1 (ENSMOCG00000015674) #20	ENSMOCG00000019980 #22	Lyn (ENSMOCG00000018677) #24	Tgs1 (ENSMOCG00000019560) #25	Tmem68 (ENSMOCG00000004085) #26	ENSMOCG00000017472	Xkr4 (ENSMOCG00000014076)	ENSMOCG00000003814 #27	ENSMOCG00000019449	ENSMOCG00000021042	Mrpl15 (ENSMOCG00000015777) #29	ENSMOCG00000018466	Lypla1 (ENSMOCG00000016895) #30	Tcea1 (ENSMOCG00000018663) #31	Rgs20 (ENSMOCG00000021946) #32	Atp6v1h (ENSMOCG00000013542) #33	Oprk1 (ENSMOCG00000021359) #34
Upper Galilee mountains blind mole rat	DUPLICATION
Upper Galilee mountains blind mole rat	MODERN SPECIES	1100															ENSNGAG00000012102	ENSNGAG00000013595 #22
Upper Galilee mountains blind mole rat	MODERN SPECIES	826								ENSNGAG00000017707	Bpnt2 (ENSNGAG00000019142) #15	Penk (ENSNGAG00000011902) #16	Sdr16c6 (ENSNGAG00000012717)	Sdr16c5 (ENSNGAG00000013369) #17	Chchd7 (ENSNGAG00000013871) #19	Plag1 (ENSNGAG00000014522) #20	Mos (ENSNGAG00000015058) #21	ENSNGAG00000015253 #22	Lyn (ENSNGAG00000016075) #24	Tgs1 (ENSNGAG00000019532) #25	ENSNGAG00000020846 #26
Upper Galilee mountains blind mole rat	MODERN SPECIES	1279												ENSNGAG00000021481	Hmg20a (ENSNGAG00000021385)	Lingo1 (ENSNGAG00000021247)	Odf3l1 (ENSNGAG00000020969)	ENSNGAG00000020737 #22	Cspg4 (ENSNGAG00000019508)	Snx33 (ENSNGAG00000019047)	Imp3 (ENSNGAG00000017248)	Snupn (ENSNGAG00000018735)	Ptpn9 (ENSNGAG00000018454)	Sin3a (ENSNGAG00000015781)	Man2c1 (ENSNGAG00000015162)	Neil1 (ENSNGAG00000012812)	Commd4 (ENSNGAG00000007593)
Rodentia_A	ANCESTRAL SPECIES																	ENSGT00390000003248.a.a.a.b.db #22
Hystricomorpha	ANCESTRAL SPECIES																	ENSGT00390000003248.a.a.a.b.db #22
Hystricomorpha_a	ANCESTRAL SPECIES																	ENSGT00390000003248.a.a.a.b.db #22
Hystricomorpha_b	ANCESTRAL SPECIES																	ENSGT00390000003248.a.a.a.b.db #22
Degu	DUPLICATION
Degu	MODERN SPECIES	43	TGM7 (ENSODEG00000016365)	ADAL (ENSODEG00000016433)	ZSCAN29 (ENSODEG00000016691)	TUBGCP4 (ENSODEG00000016217)	TP53BP1 (ENSODEG00000016364)	MAP1A (ENSODEG00000016751)	PPIP5K1 (ENSODEG00000016403)	ENSODEG00000016390	PDIA3 (ENSODEG00000016212)	ENSODEG00000016295	HYPK (ENSODEG00000016700)	MFAP1 (ENSODEG00000016397)	ENSODEG00000016060	FRMD5 (ENSODEG00000016269)	ENSODEG00000020502	ENSODEG00000016724 #22	GOLM2 (ENSODEG00000016663)	ENSODEG00000016525	CTDSPL2 (ENSODEG00000016569)	ENSODEG00000016386	SPG11 (ENSODEG00000016165)	ENSODEG00000016509	ENSODEG00000015913	CEMIP (ENSODEG00000016192)	ENSODEG00000016748	TLNRD1 (ENSODEG00000020545)	CFAP161 (ENSODEG00000015893)	ENSODEG00000016584	ENSODEG00000016326	STARD5 (ENSODEG00000015843)	TMC3 (ENSODEG00000015805)
Degu	MODERN SPECIES	43	ENSODEG00000020443	CHP1 (ENSODEG00000016900)	RTF1 (ENSODEG00000016921)	ITPKA (ENSODEG00000016760)	ENSODEG00000017041	ENSODEG00000020489	ENSODEG00000020390	MGA (ENSODEG00000017016)	ENSODEG00000016967	JMJD7 (ENSODEG00000016738)	EHD4 (ENSODEG00000016665)	PLA2G4F (ENSODEG00000016568)	VPS39 (ENSODEG00000016980)	TMEM87A (ENSODEG00000016556)	GANC (ENSODEG00000016815)	ENSODEG00000017288 #22	CAPN3 (ENSODEG00000017103)	ENSODEG00000016557	ENSODEG00000020344	ENSODEG00000016643	ENSODEG00000016623	ENSODEG00000016919	ENSODEG00000016844	CDAN1 (ENSODEG00000016883)	ENSODEG00000016839	UBR1 (ENSODEG00000016879)	TMEM62 (ENSODEG00000016864)	ENSODEG00000017025	TGM5 (ENSODEG00000016333)	TGM7 (ENSODEG00000016365)	ADAL (ENSODEG00000016433)
Guinea pig	MODERN SPECIES	25	RCC1 (ENSCPOG00000010069)	PHACTR4 (ENSCPOG00000003219)	MED18 (ENSCPOG00000038084)	SESN2 (ENSCPOG00000000236)	ATP5IF1 (ENSCPOG00000030836)	DNAJC8 (ENSCPOG00000014652)	PTAFR (ENSCPOG00000031748)	EYA3 (ENSCPOG00000012512)	ENSCPOG00000033302	SMPDL3B (ENSCPOG00000008773)	RPA2 (ENSCPOG00000008766)	THEMIS2 (ENSCPOG00000033796)	PPP1R8 (ENSCPOG00000036078)	STX12 (ENSCPOG00000013160)	FAM76A (ENSCPOG00000006186)	ENSCPOG00000031828 #22	FGR (ENSCPOG00000015092)	AHDC1 (ENSCPOG00000022607)	WASF2 (ENSCPOG00000012376)	GPR3 (ENSCPOG00000027123)	CD164L2 (ENSCPOG00000022092)	MAP3K6 (ENSCPOG00000012359)	SYTL1 (ENSCPOG00000012354)	TMEM222 (ENSCPOG00000020198)	WDTC1 (ENSCPOG00000012347)	SLC9A1 (ENSCPOG00000035897)	TENT5B (ENSCPOG00000032542)	KDF1 (ENSCPOG00000022999)	NUDC (ENSCPOG00000010413)	NR0B2 (ENSCPOG00000010409)	GPATCH3 (ENSCPOG00000010404)
Sciuridae	ANCESTRAL SPECIES	17	ENSGT00940000153886.a.b.f	ENSGT00940000158863	ENSGT00940000159497	ENSGT00940000155059 #8	ENSGT00940000154502 #9	ENSGT00940000153141.B.a #11	ENSGT00520000055567.a.a.b #12	ENSGT00950000183056.B.b #13	ENSGT00940000160216 #15	ENSGT00950000183149.A #16	ENSGT00940000163618	ENSGT00940000156731 #17	ENSGT00390000001029 #19	ENSGT00940000159246 #20	ENSGT00940000160233 #21	ENSGT00390000003248.a.a.a.b.db #22	ENSGT00390000003248.a.a.a.b.cb.a.a #22	ENSGT00940000158011 #24	ENSGT00390000018056 #25	ENSGT00390000011782 #26	ENSGT01070000253766.A.b	ENSGT00940000154242.b #27	ENSGT00940000156694	ENSGT00390000009040 #29	ENSGT00940000154185 #30	ENSGT00940000155121 #31	ENSGT00940000159123 #32	ENSGT00390000003289 #33	ENSGT00940000157341 #34	ENSGT00940000161936 #35	ENSGT00390000015871 #36
Marmotini	ANCESTRAL SPECIES	10	ENSGT00940000157108	ENSGT00940000159307	ENSGT00940000155894	ENSGT00390000005870	ENSGT00940000157544	ENSGT00940000153141.B.a #11	ENSGT00520000055567.a.a.b #12	ENSGT00950000183056.B.b #13	ENSGT00940000160216 #15	ENSGT00950000183149.A #16	ENSGT00940000163618	ENSGT00940000156731 #17	ENSGT00390000001029 #19	ENSGT00940000159246 #20	ENSGT00940000160233 #21	ENSGT00390000003248.a.a.a.b.db #22	ENSGT00940000158011 #24	ENSGT00390000018056 #25	ENSGT00390000011782 #26	ENSGT01070000253766.A.b	ENSGT00940000154242.b #27	ENSGT00940000156694	ENSGT00390000009040 #29	ENSGT00940000154185 #30	ENSGT00940000155121 #31	ENSGT00940000159123 #32	ENSGT00390000003289 #33	ENSGT00940000157341 #34	ENSGT00940000161936 #35	ENSGT00390000015871 #36	ENSGT00940000159969.a #37
Alpin marmot	MODERN SPECIES	16	ARFGEF1 (ENSMMMG00000001982)	CPA6 (ENSMMMG00000001953)	PREX2 (ENSMMMG00000001880)	C8orf34 (ENSMMMG00000001709)	ENSMMMG00000001538	CYP7A1 (ENSMMMG00000001515) #11	UBXN2B (ENSMMMG00000001510) #12	FAM110B (ENSMMMG00000001495) #13	ENSMMMG00000001477 #15	PENK (ENSMMMG00000001467) #16	ENSMMMG00000001408	SDR16C5 (ENSMMMG00000001394) #17	CHCHD7 (ENSMMMG00000001389) #19	PLAG1 (ENSMMMG00000001377) #20	MOS (ENSMMMG00000001371) #21	RPS20 (ENSMMMG00000001350) #22	LYN (ENSMMMG00000001265) #24	TGS1 (ENSMMMG00000001130) #25	TMEM68 (ENSMMMG00000001093) #26	RP1 (ENSMMMG00000001046) #27	ENSMMMG00000001041	SOX17 (ENSMMMG00000001029)	ENSMMMG00000001024	MRPL15 (ENSMMMG00000001003) #29	LYPLA1 (ENSMMMG00000000994) #30	TCEA1 (ENSMMMG00000000970) #31	ATP6V1H (ENSMMMG00000000819) #33	OPRK1 (ENSMMMG00000000792) #34	ENSMMMG00000000769	ENSMMMG00000000761	NPBWR1 (ENSMMMG00000000755) #35
Primates	ANCESTRAL SPECIES	20	ENSGT00940000158863	ENSGT00940000159497	ENSGT00940000155059 #8	ENSGT00940000154502 #9	ENSGT00940000153141.B.a #11	ENSGT00520000055567.a.a.b #12	ENSGT00950000183056.B.b #13	ENSGT00840000130804 #14	ENSGT00940000160216 #15	ENSGT00950000183149.A #16	ENSGT00940000163618	ENSGT00940000156731 #17	ENSGT00390000001029 #19	ENSGT00940000159246 #20	ENSGT00940000160233 #21	ENSGT00390000003248.a.a.a.b #22	ENSGT00940000158011 #24	ENSGT00390000018056 #25	ENSGT00390000011782 #26	ENSGT01070000253766.A.b	ENSGT00940000154242.b #27	ENSGT00940000156694	ENSGT00390000009040 #29	ENSGT00940000154185 #30	ENSGT00940000155121 #31	ENSGT00940000159123 #32	ENSGT00390000003289 #33	ENSGT00940000157341 #34	ENSGT00940000161936 #35	ENSGT00390000015871 #36	ENSGT00940000159969.a #37
Strepsirrhini	ANCESTRAL SPECIES	15	ENSGT00940000158863	ENSGT00940000159497	ENSGT00940000155059 #8	ENSGT00940000154502 #9	ENSGT00940000153141.B.a #11	ENSGT00520000055567.a.a.b #12	ENSGT00950000183056.B.b #13	ENSGT00940000160216 #15	ENSGT00950000183149.A #16	ENSGT00940000163618	ENSGT00940000156731 #17	ENSGT00390000001029 #19	ENSGT00940000159246 #20	ENSGT00940000160233 #21	ENSGT00390000003248.a.a.a.a.b ##22	ENSGT00390000003248.a.a.a.b #22	ENSGT00940000158011 #24	ENSGT00390000018056 #25	ENSGT00390000011782 #26	ENSGT01070000253766.A.b	ENSGT00940000154242.b #27	ENSGT00940000156694	ENSGT00390000009040 #29	ENSGT00940000154185 #30	ENSGT00940000155121 #31	ENSGT00940000159123 #32	ENSGT00390000003289 #33	ENSGT00940000157341 #34	ENSGT00940000161936 #35	ENSGT00390000015871 #36	ENSGT00940000159969.a #37
Lemuriformes	ANCESTRAL SPECIES	24	ENSGT00940000153649.A	ENSGT00940000153886.a.b.f	ENSGT00940000158863	ENSGT00940000159497	ENSGT00940000155059 #8	ENSGT00940000154502 #9	ENSGT00940000153141.B.a #11	ENSGT00520000055567.a.a.b #12	ENSGT00950000183056.B.b #13	ENSGT00940000160216 #15	ENSGT00950000183149.A #16	ENSGT00940000163618	ENSGT00940000156731 #17	ENSGT00390000001029 #19	ENSGT00940000159246 #20	ENSGT00390000003248.a.a.a.b #22	ENSGT00940000158011 #24	ENSGT00390000018056 #25	ENSGT00390000011782 #26	ENSGT01070000253766.A.b	ENSGT00940000154242.b #27	ENSGT00940000156694	ENSGT00390000009040 #29	ENSGT00940000154185 #30	ENSGT00940000155121 #31	ENSGT00940000159123 #32	ENSGT00390000003289 #33	ENSGT00940000157341 #34	ENSGT00940000161936 #35	ENSGT00390000015871 #36	ENSGT00940000159969.a #37
Mouse lemur	DUPLICATION
Mouse lemur	MODERN SPECIES	27	ENSMICG00000042671	GRIA4 (ENSMICG00000003112)	MSANTD4 (ENSMICG00000036595)	KBTBD3 (ENSMICG00000030981)	AASDHPPT (ENSMICG00000032630)	ENSMICG00000036566	ENSMICG00000035020	GUCY1A2 (ENSMICG00000004925)	CWF19L2 (ENSMICG00000010853)	ALKBH8 (ENSMICG00000001044)	ELMOD1 (ENSMICG00000001050)	SLC35F2 (ENSMICG00000000245)	ENSMICG00000038149	RAB39A (ENSMICG00000045554)	CUL5 (ENSMICG00000000376)	ENSMICG00000028194 #22	ACAT1 (ENSMICG00000000380)	NPAT (ENSMICG00000000386)	ATM (ENSMICG00000013655)	ENSMICG00000001104	C11orf65 (ENSMICG00000003461)	POGLUT3 (ENSMICG00000003463)	EXPH5 (ENSMICG00000044911)	DDX10 (ENSMICG00000035071)	ZC3H12C (ENSMICG00000011455)	RDX (ENSMICG00000011469)	FDX1 (ENSMICG00000007112)	ENSMICG00000002989	ARHGAP20 (ENSMICG00000029239)	POU2AF2 (ENSMICG00000028357)	POU2AF3 (ENSMICG00000032454)
Mouse lemur	MODERN SPECIES	31	SNTG1 (ENSMICG00000001818)	ENSMICG00000045521	PCMTD1 (ENSMICG00000003704)	ST18 (ENSMICG00000003705)	ALKAL1 (ENSMICG00000046052) #37	RB1CC1 (ENSMICG00000000604) #36	CYP7A1 (ENSMICG00000030668) #11	UBXN2B (ENSMICG00000028037) #12	FAM110B (ENSMICG00000041645) #13	ENSMICG00000027477	BPNT2 (ENSMICG00000028623) #15	PENK (ENSMICG00000041439) #16	SDR16C5 (ENSMICG00000011717) #17	CHCHD7 (ENSMICG00000007022) #19	PLAG1 (ENSMICG00000047968) #20	RPS20 (ENSMICG00000034860) #22	LYN (ENSMICG00000031282) #24	TGS1 (ENSMICG00000011199) #25	TMEM68 (ENSMICG00000011190) #26	XKR4 (ENSMICG00000004668)	ENSMICG00000031576 #27	SOX17 (ENSMICG00000046540)	MRPL15 (ENSMICG00000009779) #29	LYPLA1 (ENSMICG00000015545) #30	TCEA1 (ENSMICG00000029278) #31	RGS20 (ENSMICG00000015672) #32	ATP6V1H (ENSMICG00000015657) #33	ENSMICG00000044219	OPRK1 (ENSMICG00000043008) #34	ENSMICG00000003968 #9	NSMAF (ENSMICG00000003974) #8
Lemuriformes_a	ANCESTRAL SPECIES	22	ENSGT00940000161497	ENSGT00940000159114	ENSGT00940000164349.b	ENSGT00940000155677.b	ENSGT00440000039469	ENSGT00940000158415	ENSGT00390000004663	ENSGT00940000157765	ENSGT00940000155627	ENSGT00940000158563	ENSGT00940000159782	ENSGT01100000263709	ENSGT00390000015655.a	ENSGT00940000159933	ENSGT00940000156648	ENSGT00390000003248.a.a.a.b #22	ENSGT01030000234626.E	ENSGT00390000012388	ENSGT00670000098061	ENSGT00940000168617.e	ENSGT00510000048394	ENSGT00940000159028	ENSGT00390000011087	ENSGT00550000074980	ENSGT00390000012905	ENSGT00940000158397	ENSGT01090000260082.d.a.b	ENSGT00940000156916	ENSGT00940000154633	ENSGT00390000000586	ENSGT00420000030454
Coquerels sifaka	DUPLICATION
Coquerels sifaka	MODERN SPECIES	760	ENSPCOG00000019189	ENSPCOG00000028357	CARD18 (ENSPCOG00000012524)	GRIA4 (ENSPCOG00000028018)	MSANTD4 (ENSPCOG00000023276)	KBTBD3 (ENSPCOG00000021176)	AASDHPPT (ENSPCOG00000014297)	GUCY1A2 (ENSPCOG00000016375)	ENSPCOG00000015897	CWF19L2 (ENSPCOG00000018032)	ALKBH8 (ENSPCOG00000022645)	ELMOD1 (ENSPCOG00000023055)	SLC35F2 (ENSPCOG00000008427)	RAB39A (ENSPCOG00000019017)	CUL5 (ENSPCOG00000025380)	ENSPCOG00000028494 #22	ACAT1 (ENSPCOG00000023465)	NPAT (ENSPCOG00000016278)	ATM (ENSPCOG00000020514)	ENSPCOG00000014064	C11orf65 (ENSPCOG00000016836)	POGLUT3 (ENSPCOG00000020286)	EXPH5 (ENSPCOG00000018196)	DDX10 (ENSPCOG00000020289)	ZC3H12C (ENSPCOG00000024737)	FDX1 (ENSPCOG00000012522)	ARHGAP20 (ENSPCOG00000018878)	POU2AF2 (ENSPCOG00000023153)	POU2AF3 (ENSPCOG00000004372)	POU2AF1 (ENSPCOG00000015832)	BTG4 (ENSPCOG00000025062)
Coquerels sifaka	MODERN SPECIES	280	TMEM143 (ENSPCOG00000013967)	SYNGR4 (ENSPCOG00000024811)	KDELR1 (ENSPCOG00000024282)	GRIN2D (ENSPCOG00000010109)	GRWD1 (ENSPCOG00000009803)	KCNJ14 (ENSPCOG00000017705)	CYTH2 (ENSPCOG00000025849)	LMTK3 (ENSPCOG00000024424)	SULT2B1 (ENSPCOG00000023199)	FAM83E (ENSPCOG00000014605)	RPL18 (ENSPCOG00000026360)	SPHK2 (ENSPCOG00000003039)	DBP (ENSPCOG00000016955)	CA11 (ENSPCOG00000019168)	NTN5 (ENSPCOG00000028425)	ENSPCOG00000003035 #22	MAMSTR (ENSPCOG00000023398)	RASIP1 (ENSPCOG00000003637)	IZUMO1 (ENSPCOG00000018755)	FGF21 (ENSPCOG00000027174)	BCAT2 (ENSPCOG00000022098)	HSD17B14 (ENSPCOG00000020458)	PLEKHA4 (ENSPCOG00000025521)	PPP1R15A (ENSPCOG00000022531)	TULP2 (ENSPCOG00000015059)	NUCB1 (ENSPCOG00000017695)	DHDH (ENSPCOG00000021156)	BAX (ENSPCOG00000021695)	FTL (ENSPCOG00000025790)	GYS1 (ENSPCOG00000026554)	RUVBL2 (ENSPCOG00000027000)
Haplorrhini	ANCESTRAL SPECIES	19	ENSGT00940000158863	ENSGT00940000159497	ENSGT00940000155059 #8	ENSGT00940000154502 #9	ENSGT00940000153141.B.a #11	ENSGT00520000055567.a.a.b #12	ENSGT00950000183056.B.b #13	ENSGT00840000130804 #14	ENSGT00940000160216 #15	ENSGT00950000183149.A #16	ENSGT00940000163618	ENSGT00940000156731 #17	ENSGT00390000001029 #19	ENSGT00940000159246 #20	ENSGT00940000160233 #21	ENSGT00390000003248.a.a.a.b #22	ENSGT00940000158011 #24	ENSGT00390000018056 #25	ENSGT00390000011782 #26	ENSGT01070000253766.A.b	ENSGT00940000154242.b #27	ENSGT00940000156694	ENSGT00390000009040 #29	ENSGT00940000154185 #30	ENSGT00940000155121 #31	ENSGT00940000159123 #32	ENSGT00390000003289 #33	ENSGT00940000157341 #34	ENSGT00940000161936 #35	ENSGT00390000015871 #36	ENSGT00940000159969.a #37
Simiiformes	ANCESTRAL SPECIES	20	ENSGT00940000158863	ENSGT00940000159497	ENSGT00940000155059 #8	ENSGT00940000154502 #9	ENSGT00940000153141.B.a #11	ENSGT00520000055567.a.a.b #12	ENSGT00950000183056.B.b #13	ENSGT00840000130804 #14	ENSGT00940000160216 #15	ENSGT00950000183149.A #16	ENSGT00940000163618	ENSGT00940000156731 #17	ENSGT00390000001029 #19	ENSGT00940000159246 #20	ENSGT00940000160233 #21	ENSGT00390000003248.a.a.a.b #22	ENSGT00940000158011 #24	ENSGT00390000018056 #25	ENSGT00390000011782 #26	ENSGT01070000253766.A.b	ENSGT00940000154242.b #27	ENSGT00390000015600.c.a.e	ENSGT00940000156694	ENSGT00390000009040 #29	ENSGT00940000154185 #30	ENSGT00940000155121 #31	ENSGT00940000159123 #32	ENSGT00390000003289 #33	ENSGT00940000157341 #34	ENSGT00940000161936 #35	ENSGT00390000015871 #36
Catarrhini	ANCESTRAL SPECIES	15	ENSGT00940000154502.h #9	ENSGT00940000155059.e #8	ENSGT00940000154502.g.b.a #9	ENSGT00940000153141.B.a #11	ENSGT00940000153876.B.j.a.b.a	ENSGT00520000055567.a.a.b #12	ENSGT00950000183056.B.b #13	ENSGT00840000130804 #14	ENSGT00940000160216 #15	ENSGT00950000183149.A #16	ENSGT00940000163618	ENSGT00940000156731 #17	ENSGT00390000001029 #19	ENSGT00940000159246 #20	ENSGT00940000160233 #21	ENSGT00390000003248.a.a.a.b #22	ENSGT00940000158011 #24	ENSGT00390000018056 #25	ENSGT00390000011782 #26	ENSGT01070000253766.A.b	ENSGT00940000155263.v	ENSGT00940000164647	ENSGT00940000154242.b #27	ENSGT00390000015600.c.a.e	ENSGT00940000156694	ENSGT00440000038159.o.b	ENSGT00390000009040 #29	ENSGT00940000154185.l.a.a #30	ENSGT00940000155121 #31	ENSGT00940000159123 #32	ENSGT00390000003289 #33
Cercopithecidae	ANCESTRAL SPECIES	14	ENSGT00910000147347	ENSGT00940000155059.f.b #8	ENSGT00940000154502.g.b.a #9	ENSGT00940000153141.B.a #11	ENSGT00940000153876.B.j.a.b.a	ENSGT00520000055567.a.a.b #12	ENSGT00950000183056.B.b #13	ENSGT00840000130804 #14	ENSGT00940000160216 #15	ENSGT00950000183149.A #16	ENSGT00940000163618	ENSGT00940000156731 #17	ENSGT00390000001029 #19	ENSGT00940000159246 #20	ENSGT00940000160233 #21	ENSGT00390000003248.a.a.a.b #22	ENSGT00940000158011 #24	ENSGT00390000018056 #25	ENSGT00390000011782 #26	ENSGT01070000253766.A.b	ENSGT00940000155263.v	ENSGT00940000164647	ENSGT00940000154242.b #27	ENSGT00390000015600.c.a.e	ENSGT00940000156694	ENSGT00440000038159.o.b	ENSGT00390000009040 #29	ENSGT00940000154185.l.a.a #30	ENSGT00940000155121 #31	ENSGT00940000159123 #32	ENSGT00390000003289 #33
Cercopithecinae	ANCESTRAL SPECIES	16	ENSGT00940000154502.h #9	ENSGT00910000147347	ENSGT00940000155059.f.b #8	ENSGT00940000154502.g.b.a.a #9	ENSGT00940000153141.B.a #11	ENSGT00520000055567.a.a.b #12	ENSGT00950000183056.B.b #13	ENSGT00840000130804 #14	ENSGT00940000160216 #15	ENSGT00950000183149.A #16	ENSGT00940000163618	ENSGT00940000156731 #17	ENSGT00390000001029 #19	ENSGT00940000159246 #20	ENSGT00940000160233 #21	ENSGT00390000003248.a.a.a.b #22	ENSGT00940000158011 #24	ENSGT00390000018056 #25	ENSGT00390000011782 #26	ENSGT01070000253766.A.b	ENSGT00940000155263.v	ENSGT00940000164647	ENSGT00940000154242.b #27	ENSGT00390000015600.c.a.e	ENSGT00940000156694	ENSGT00440000038159.o.b	ENSGT00390000009040 #29	ENSGT00940000154185.l.a.a.a #30	ENSGT00940000155121 #31	ENSGT00940000159123 #32	ENSGT00390000003289 #33
Vervet Monkey	MODERN SPECIES	27	CA8 (ENSCSAG00000014368)	TOX (ENSCSAG00000014375)	ENSCSAG00000014470 #8	ENSCSAG00000014518 #9	CYP7A1 (ENSCSAG00000014532) #11	UBXN2B (ENSCSAG00000014542) #12	FAM110B (ENSCSAG00000018549) #13	ENSCSAG00000018548	BPNT2 (ENSCSAG00000014546) #15	PENK (ENSCSAG00000014552) #16	SDR16C5 (ENSCSAG00000014558) #17	CHCHD7 (ENSCSAG00000014569) #19	PLAG1 (ENSCSAG00000014574) #20	MOS (ENSCSAG00000018547) #21	ENSCSAG00000014589	RPS20 (ENSCSAG00000014597) #22	LYN (ENSCSAG00000014603) #24	TGS1 (ENSCSAG00000014611) #25	TMEM68 (ENSCSAG00000014625) #26	ENSCSAG00000014632	ENSCSAG00000014645	RP1 (ENSCSAG00000014654) #27	SOX17 (ENSCSAG00000014667)	ENSCSAG00000018544	MRPL15 (ENSCSAG00000014671) #29	TCEA1 (ENSCSAG00000014680) #31	RGS20 (ENSCSAG00000014690) #32	ATP6V1H (ENSCSAG00000014698) #33	OPRK1 (ENSCSAG00000014703) #34	NPBWR1 (ENSCSAG00000018542) #35	RB1CC1 (ENSCSAG00000014715) #36
Cercopithecinae_a	ANCESTRAL SPECIES	15	ENSGT00910000147347	ENSGT00940000155059.f.b #8	ENSGT00940000154502.g.b.a.a #9	ENSGT00940000155762	ENSGT00940000153141.B.a #11	ENSGT00520000055567.a.a.b #12	ENSGT00950000183056.B.b #13	ENSGT00840000130804 #14	ENSGT00940000160216 #15	ENSGT00950000183149.A #16	ENSGT00940000163618	ENSGT00940000156731 #17	ENSGT00390000001029 #19	ENSGT00940000159246 #20	ENSGT00940000160233 #21	ENSGT00390000003248.a.a.a.b #22	ENSGT00940000153052.c.b.a.a.a.a.b.a.b	ENSGT00390000003248.a.a.a.a.b ##22	ENSGT00940000158011 #24	ENSGT00390000018056 #25	ENSGT00390000011782 #26	ENSGT01070000253766.A.b	ENSGT00940000155263.v	ENSGT00940000154242.b #27	ENSGT00390000015600.c.a.e	ENSGT00940000156694	ENSGT00440000038159.o.b	ENSGT00390000009040 #29	ENSGT00940000154185.l.a.a.a #30	ENSGT00940000155121 #31	ENSGT00390000004881.z
Cercopithecinae_b	ANCESTRAL SPECIES	9	ENSGT00910000147347	ENSGT00940000155059.f.b #8	ENSGT00940000154502.g.b.a.a #9	ENSGT00940000155762	ENSGT00940000153141.B.a #11	ENSGT00520000055567.a.a.b #12	ENSGT00950000183056.B.b #13	ENSGT00940000160216 #15	ENSGT00950000183149.A #16	ENSGT00940000156731 #17	ENSGT00390000001029 #19	ENSGT00940000159246 #20	ENSGT00940000160233 #21	ENSGT00940000153052.c.b.a.a.a.a.b.a.b	ENSGT00390000003248.a.a.a.a.b ##22	ENSGT00390000003248.a.a.a.b #22	ENSGT00940000158011 #24	ENSGT00390000018056 #25	ENSGT00390000011782 #26	ENSGT01070000253766.A.b	ENSGT00940000154242.b #27	ENSGT00390000015600.c.a.e	ENSGT00940000156694	ENSGT00440000038159.o.b	ENSGT00390000009040 #29	ENSGT00940000154185.l.a.a.a #30	ENSGT00940000155121 #31	ENSGT00390000004881.z	ENSGT00940000159123 #32	ENSGT00910000147783	ENSGT00390000003289 #33
Olive baboon	DUPLICATION
Olive baboon	MODERN SPECIES	792	IL1RAPL1 (ENSPANG00000007585)	ENSPANG00000048760	ENSPANG00000040133	DCAF8L1 (ENSPANG00000024278)	ENSPANG00000049317	MAGEB10 (ENSPANG00000048909)	ENSPANG00000040441	DCAF8L2 (ENSPANG00000046861)	ENSPANG00000034100	ENSPANG00000041552	MAGEB5 (ENSPANG00000035394)	MAGEB18 (ENSPANG00000039076)	ENSPANG00000019440	ENSPANG00000045518	POLA1 (ENSPANG00000010729)	ENSPANG00000039655 #22	ARX (ENSPANG00000008103)	PCYT1B (ENSPANG00000002970)	PDK3 (ENSPANG00000017372)	ENSPANG00000042252	ENSPANG00000049773	ENSPANG00000010730	ENSPANG00000020386	ZFX (ENSPANG00000000982)	ENSPANG00000045157	ENSPANG00000004507	KLHL15 (ENSPANG00000010573)	CXorf58 (ENSPANG00000017030)	APOO (ENSPANG00000009164)	ENSPANG00000010731	SAT1 (ENSPANG00000004013)
Olive baboon	MODERN SPECIES	18	CYP7A1 (ENSPANG00000017844) #11	UBXN2B (ENSPANG00000014734) #12	FAM110B (ENSPANG00000013667) #13	ENSPANG00000041025	ENSPANG00000044863	ENSPANG00000042586	ENSPANG00000042702	ENSPANG00000050330	BPNT2 (ENSPANG00000008388) #15	ENSPANG00000048475	ENSPANG00000050287	PENK (ENSPANG00000015057) #16	SDR16C5 (ENSPANG00000005056) #17	CHCHD7 (ENSPANG00000026089) #19	PLAG1 (ENSPANG00000009705) #20	ENSPANG00000018451 #22	LYN (ENSPANG00000024756) #24	TGS1 (ENSPANG00000018910) #25	TMEM68 (ENSPANG00000009706) #26	XKR4 (ENSPANG00000034384)	RP1 (ENSPANG00000005975) #27	ENSPANG00000030917	SOX17 (ENSPANG00000044610)	ENSPANG00000049863	ENSPANG00000015007 #29	ENSPANG00000009673 #30	TCEA1 (ENSPANG00000018453) #31	RGS20 (ENSPANG00000017181) #32	ATP6V1H (ENSPANG00000015126) #33	ENSPANG00000032914	OPRK1 (ENSPANG00000009674) #34
Cercopithecinae_d	ANCESTRAL SPECIES	124	ENSGT00390000004690.a.b.h	ENSGT00940000154509	ENSGT00940000156021	ENSGT00940000155626	ENSGT00940000156710	ENSGT00500000044920	ENSGT00390000005261	ENSGT00910000148039	ENSGT00940000157580	ENSGT00940000160654	ENSGT00940000154433.a.b.l.a	ENSGT00510000048726	ENSGT00940000162193	ENSGT00940000158640	ENSGT00940000159453	ENSGT00390000003248.a.a.a.b #22	ENSGT00940000161471	ENSGT00440000033811	ENSGT00390000003428	ENSGT00390000010172	ENSGT00390000013264.d.f	ENSGT00940000159397	ENSGT00940000154630.b	ENSGT00390000017143	ENSGT00530000064285	ENSGT00940000155341.h	ENSGT00390000001695	ENSGT00950000183132.C	ENSGT00530000063555.A.a.a	ENSGT00930000150941.x.b.b
Drill	MODERN SPECIES	1090	MANF (ENSMLEG00000038782)	ENSMLEG00000029304	DCAF1 (ENSMLEG00000030256)	KIT (ENSMLEG00000040087)	KDR (ENSMLEG00000038992)	SRD5A3 (ENSMLEG00000036587)	TMEM165 (ENSMLEG00000036618)	ENSMLEG00000026848	CLOCK (ENSMLEG00000032159)	PDCL2 (ENSMLEG00000032563)	ENSMLEG00000033206	NMU (ENSMLEG00000001068)	EXOC1L (ENSMLEG00000012366)	EXOC1 (ENSMLEG00000031006)	CEP135 (ENSMLEG00000042514)	ENSMLEG00000016421 #22
Sooty mangabey	MODERN SPECIES	180	ENSCATG00000038972	PDGFRA (ENSCATG00000018830)	KIT (ENSCATG00000004601)	KDR (ENSCATG00000026660)	ENSCATG00000035741	SRD5A3 (ENSCATG00000040052)	TMEM165 (ENSCATG00000036895)	ENSCATG00000017377	CLOCK (ENSCATG00000002646)	PDCL2 (ENSCATG00000041890)	ENSCATG00000040815	NMU (ENSCATG00000000632)	EXOC1L (ENSCATG00000029322)	EXOC1 (ENSCATG00000043473)	CEP135 (ENSCATG00000012612)	ENSCATG00000020059 #22	CRACD (ENSCATG00000034559)	AASDH (ENSCATG00000009332)	PPAT (ENSCATG00000000386)	PAICS (ENSCATG00000036203)	SRP72 (ENSCATG00000008072)	ARL9 (ENSCATG00000031380)	THEGL (ENSCATG00000041268)	ENSCATG00000032783
Macaca	ANCESTRAL SPECIES	14	ENSGT00940000155059.f.b #8	ENSGT00940000154502.g.b.a.a #9	ENSGT00940000155762	ENSGT00940000153141.B.a #11	ENSGT00520000055567.a.a.b #12	ENSGT00950000183056.B.b #13	ENSGT00910000147608	ENSGT00840000130804 #14	ENSGT00940000160216 #15	ENSGT00950000183149.A #16	ENSGT00940000163618	ENSGT00940000156731 #17	ENSGT00390000001029 #19	ENSGT00940000159246 #20	ENSGT00940000160233 #21	ENSGT00390000003248.a.a.a.b #22	ENSGT00940000153052.c.b.a.a.a.a.b.a.b	ENSGT00390000003248.a.a.a.a.b ##22	ENSGT00940000158011 #24	ENSGT00390000018056 #25	ENSGT00390000011782 #26	ENSGT01070000253766.A.b	ENSGT00940000155263.v	ENSGT00940000154242.b #27	ENSGT00390000015600.c.a.e	ENSGT00940000156694	ENSGT00390000009040 #29	ENSGT00940000154185.l.a.a.a #30	ENSGT00940000155121 #31	ENSGT00390000004881.z	ENSGT00940000159123 #32
Pig-tailed macaque	DUPLICATION
Pig-tailed macaque	MODERN SPECIES	549																ENSMNEG00000007228 #22	ENSMNEG00000044162	ARX (ENSMNEG00000041141)	POLA1 (ENSMNEG00000031890)	PCYT1B (ENSMNEG00000028533)	PDK3 (ENSMNEG00000044294)	ENSMNEG00000001268	ZFX (ENSMNEG00000045098)	ENSMNEG00000031395	KLHL15 (ENSMNEG00000006144)	CXorf58 (ENSMNEG00000045055)	APOO (ENSMNEG00000021703)	ENSMNEG00000042646	SAT1 (ENSMNEG00000028507)	ACOT9 (ENSMNEG00000034251)	PRDX4 (ENSMNEG00000030258)
Pig-tailed macaque	MODERN SPECIES	593	CHD4 (ENSMNEG00000044776)	ENSMNEG00000034027	IFFO1 (ENSMNEG00000039291)	GAPDH (ENSMNEG00000040437)	NCAPD2 (ENSMNEG00000038279)	MRPL51 (ENSMNEG00000032063)	ENSMNEG00000040627	VAMP1 (ENSMNEG00000006897)	ENSMNEG00000033079	TAPBPL (ENSMNEG00000013053)	CD27 (ENSMNEG00000007757)	LTBR (ENSMNEG00000030358)	SCNN1A (ENSMNEG00000029812)	TNFRSF1A (ENSMNEG00000030151)	PLEKHG6 (ENSMNEG00000029942)	ENSMNEG00000019715 #22	CD9 (ENSMNEG00000042314)	VWF (ENSMNEG00000042662)	ANO2 (ENSMNEG00000032451)	NTF3 (ENSMNEG00000040348)	KCNA5 (ENSMNEG00000002803)	KCNA1 (ENSMNEG00000000927)	KCNA6 (ENSMNEG00000028058)	ENSMNEG00000031558	GALNT8 (ENSMNEG00000019623)	NDUFA9 (ENSMNEG00000038549)	ENSMNEG00000032661	AKAP3 (ENSMNEG00000030253)	DYRK4 (ENSMNEG00000032078)	RAD51AP1 (ENSMNEG00000031816)	C12orf4 (ENSMNEG00000029537)
Pig-tailed macaque	MODERN SPECIES	272	SPIN1 (ENSMNEG00000038251)	NXNL2 (ENSMNEG00000014676)	ENSMNEG00000037607	ENSMNEG00000031176	S1PR3 (ENSMNEG00000007167)	ENSMNEG00000018696	SHC3 (ENSMNEG00000036450)	CKS2 (ENSMNEG00000032033)	SECISBP2 (ENSMNEG00000031737)	SEMA4D (ENSMNEG00000033475)	GADD45G (ENSMNEG00000042753)	ENSMNEG00000012312	DIRAS2 (ENSMNEG00000003176)	SYK (ENSMNEG00000037700)	AUH (ENSMNEG00000044070)	ENSMNEG00000015556 #22	NFIL3 (ENSMNEG00000028212)	ROR2 (ENSMNEG00000041877)	SPTLC1 (ENSMNEG00000021594)	ENSMNEG00000006043	ENSMNEG00000035499	IARS1 (ENSMNEG00000018792)	NOL8 (ENSMNEG00000036927)	CENPP (ENSMNEG00000040692)	OGN (ENSMNEG00000024272)	OMD (ENSMNEG00000040476)	ASPN (ENSMNEG00000034619)	ECM2 (ENSMNEG00000044237)	IPPK (ENSMNEG00000040673)	BICD2 (ENSMNEG00000044602)	FGD3 (ENSMNEG00000035382)
Macaca_a	ANCESTRAL SPECIES	16	ENSGT00910000147170	ENSGT00940000158863	ENSGT00940000159497	ENSGT00940000155059.f.a.b #8	ENSGT00940000154502.h #9	ENSGT00940000153141.B.a #11	ENSGT00520000055567.a.a.b #12	ENSGT00950000183056.B.b #13	ENSGT00940000160216 #15	ENSGT00950000183149.A #16	ENSGT00940000163618	ENSGT00940000156731 #17	ENSGT00390000001029 #19	ENSGT00940000159246 #20	ENSGT00940000160233 #21	ENSGT00390000003248.a.a.a.b #22	ENSGT00940000158011 #24	ENSGT00390000018056 #25	ENSGT00390000011782 #26	ENSGT01070000253766.A.b	ENSGT00940000154242.b #27	ENSGT00390000015600.c.a.e	ENSGT00940000156694	ENSGT01040000240559.a.a.b	ENSGT00390000009040 #29	ENSGT00940000154185.l.a.a.a #30	ENSGT00940000155121 #31	ENSGT00940000159123 #32	ENSGT00910000147783	ENSGT00390000003289 #33	ENSGT00940000157341 #34
Crab-eating macaque	MODERN SPECIES	18	TOX (ENSMFAG00000017703)	NSMAF (ENSMFAG00000003576) #8	SDCBP (ENSMFAG00000037999) #9	ENSMFAG00000049240	CYP7A1 (ENSMFAG00000041863) #11	UBXN2B (ENSMFAG00000014095) #12	FAM110B (ENSMFAG00000038229) #13	BPNT2 (ENSMFAG00000034283) #15	ENSMFAG00000061878	PENK (ENSMFAG00000031729) #16	ENSMFAG00000059119	SDR16C5 (ENSMFAG00000002079) #17	ENSMFAG00000040366 #19	PLAG1 (ENSMFAG00000030888) #20	MOS (ENSMFAG00000012716) #21	RPS20 (ENSMFAG00000053482) #22	ENSMFAG00000049803	LYN (ENSMFAG00000043272) #24	ENSMFAG00000059898	TGS1 (ENSMFAG00000029838) #25	TMEM68 (ENSMFAG00000019904) #26	XKR4 (ENSMFAG00000039071)	RP1 (ENSMFAG00000038067) #27	SOX17 (ENSMFAG00000056293)	ENSMFAG00000062730	ENSMFAG00000064062	MRPL15 (ENSMFAG00000000491) #29	ENSMFAG00000057104	TCEA1 (ENSMFAG00000041675) #31	RGS20 (ENSMFAG00000031333) #32	ENSMFAG00000064802
Rhesus	DUPLICATION
Rhesus	MODERN SPECIES	327	TASL (ENSMMUG00000012710)	NR0B1 (ENSMMUG00000012775)	MAGEB1 (ENSMMUG00000012774)	MAGEB3 (ENSMMUG00000012772)	ENSMMUG00000057867	IL1RAPL1 (ENSMMUG00000001663)	ENSMMUG00000050066	MAGEB10 (ENSMMUG00000022849)	DCAF8L1 (ENSMMUG00000003918)	ENSMMUG00000060474	ENSMMUG00000061434	MAGEB5 (ENSMMUG00000044123)	ENSMMUG00000037513	MAGEB18 (ENSMMUG00000010056)	ENSMMUG00000056114	ENSMMUG00000045362 #22	ARX (ENSMMUG00000055034)	POLA1 (ENSMMUG00000018433)	PCYT1B (ENSMMUG00000012821)	PDK3 (ENSMMUG00000012819)	ENSMMUG00000042416	ENSMMUG00000042317	ENSMMUG00000032498	ZFX (ENSMMUG00000009801)	ENSMMUG00000006979	KLHL15 (ENSMMUG00000037633)	CXHXorf58 (ENSMMUG00000064452)	APOO (ENSMMUG00000016361)	ENSMMUG00000057253	SAT1 (ENSMMUG00000060580)	ACOT9 (ENSMMUG00000018824)
Rhesus	MODERN SPECIES	10	ENSMMUG00000060263	TSHZ3 (ENSMMUG00000014028)	ZNF536 (ENSMMUG00000063586)	ENSMMUG00000058273	URI1 (ENSMMUG00000018441)	CCNE1 (ENSMMUG00000020668)	C19H19orf12 (ENSMMUG00000021690)	PLEKHF1 (ENSMMUG00000011373)	POP4 (ENSMMUG00000017424)	VSTM2B (ENSMMUG00000007392)	ENSMMUG00000008417	ENSMMUG00000012013	ENSMMUG00000040891	ENSMMUG00000053639	ZNF254 (ENSMMUG00000052284)	ENSMMUG00000065175 #22	ENSMMUG00000061458	ZNF726 (ENSMMUG00000003645)	ENSMMUG00000003688	ENSMMUG00000062694	ENSMMUG00000037794	ENSMMUG00000063831	ENSMMUG00000064404	ENSMMUG00000045698	ENSMMUG00000059643	ENSMMUG00000028816	ENSMMUG00000053961	ENSMMUG00000038943	ENSMMUG00000060408	ENSMMUG00000062521	ENSMMUG00000064561
Rhesus	MODERN SPECIES	18	ENSMMUG00000017297 #8	SDCBP (ENSMMUG00000017296) #9	ENSMMUG00000010354	CYP7A1 (ENSMMUG00000006543) #11	ENSMMUG00000064769	UBXN2B (ENSMMUG00000001100) #12	FAM110B (ENSMMUG00000055289) #13	ENSMMUG00000053023	BPNT2 (ENSMMUG00000014650) #15	PENK (ENSMMUG00000006775) #16	ENSMMUG00000052791	SDR16C5 (ENSMMUG00000014810) #17	CHCHD7 (ENSMMUG00000046464) #19	PLAG1 (ENSMMUG00000061268) #20	MOS (ENSMMUG00000015236) #21	RPS20 (ENSMMUG00000053276) #22	LYN (ENSMMUG00000014149) #24	ENSMMUG00000058606	TGS1 (ENSMMUG00000005478) #25	TMEM68 (ENSMMUG00000005477) #26	ENSMMUG00000055000	XKR4 (ENSMMUG00000003733)	RP1 (ENSMMUG00000014640) #27	ENSMMUG00000000082	SOX17 (ENSMMUG00000063192)	ENSMMUG00000051150	MRPL15 (ENSMMUG00000005539) #29	LYPLA1 (ENSMMUG00000013157) #30	TCEA1 (ENSMMUG00000016022) #31	RGS20 (ENSMMUG00000015417) #32	ATP6V1H (ENSMMUG00000004064) #33
Rhinopithecus	ANCESTRAL SPECIES																	ENSGT00390000003248.a.a.a.b #22
Black snub-nosed monkey	MODERN SPECIES	1026								GCG (ENSRBIG00000037468)	FAP (ENSRBIG00000038012)	IFIH1 (ENSRBIG00000029188)	GCA (ENSRBIG00000000271)	ENSRBIG00000034718	KCNH7 (ENSRBIG00000039134)	ENSRBIG00000030858	FIGN (ENSRBIG00000031693)	ENSRBIG00000029608 #22
Golden snub-nosed monkey	DUPLICATION
Golden snub-nosed monkey	MODERN SPECIES	2663														ENSRROG00000031199	NONO (ENSRROG00000043203)	ENSRROG00000023407 #22
Golden snub-nosed monkey	MODERN SPECIES	1766	KRT3 (ENSRROG00000037448)	KRT79 (ENSRROG00000039228)	KRT76 (ENSRROG00000008365)	ENSRROG00000029941	ENSRROG00000037989	ENSRROG00000031377	ENSRROG00000038431	EIF4B (ENSRROG00000033336)	TNS2 (ENSRROG00000040696)	SPRYD3 (ENSRROG00000036435)	IGFBP6 (ENSRROG00000028720)	SOAT2 (ENSRROG00000043344)	CSAD (ENSRROG00000036761)	ZNF740 (ENSRROG00000037136)	ITGB7 (ENSRROG00000028868)	ENSRROG00000007396 #22	RARG (ENSRROG00000034892)	MFSD5 (ENSRROG00000037319)	ESPL1 (ENSRROG00000043464)	ENSRROG00000042206	MYG1 (ENSRROG00000030453)	AAAS (ENSRROG00000040227)	SP7 (ENSRROG00000029296)	SP1 (ENSRROG00000029551)	AMHR2 (ENSRROG00000035137)	ENSRROG00000043448	PCBP2 (ENSRROG00000041377)	MAP3K12 (ENSRROG00000029455)	TARBP2 (ENSRROG00000044783)	NPFF (ENSRROG00000042539)	ATF7 (ENSRROG00000031964)
Hominoidea	ANCESTRAL SPECIES	14	ENSGT00910000147347	ENSGT00940000155059.e #8	ENSGT00940000154502.g.b.a #9	ENSGT00940000153141.B.a #11	ENSGT00940000153876.B.j.a.b.a	ENSGT00520000055567.a.a.b #12	ENSGT00950000183056.B.b #13	ENSGT00840000130804 #14	ENSGT00940000160216 #15	ENSGT00390000005254.i.a.b.n.a	ENSGT00950000183149.A #16	ENSGT00940000156731 #17	ENSGT00390000001029 #19	ENSGT00940000159246 #20	ENSGT00940000160233 #21	ENSGT00390000003248.a.a.a.b #22	ENSGT00940000158011 #24	ENSGT00390000018056 #25	ENSGT00390000011782 #26	ENSGT01070000253766.A.b	ENSGT00940000155263.v	ENSGT00940000154242.b #27	ENSGT00390000015600.c.a.e	ENSGT00940000156694	ENSGT00440000038159.o.b	ENSGT00390000009040 #29	ENSGT00940000154185.l.a.a #30	ENSGT00940000154185.l.a.b #30	ENSGT00940000155121 #31	ENSGT00940000159123 #32	ENSGT00390000003289 #33
Gibbon	DUPLICATION
Gibbon	MODERN SPECIES	11	ENSNLEG00000018377	PSMD7 (ENSNLEG00000032555)	WWP2 (ENSNLEG00000005599)	ENSNLEG00000030907	NOB1 (ENSNLEG00000005572)	NQO1 (ENSNLEG00000032087)	NFAT5 (ENSNLEG00000005522)	CYB5B (ENSNLEG00000005515)	TERF2 (ENSNLEG00000005506)	TMED6 (ENSNLEG00000005500)	NIP7 (ENSNLEG00000005492)	ENSNLEG00000005489	PDF (ENSNLEG00000005487)	VPS4A (ENSNLEG00000005466)	SNTB2 (ENSNLEG00000005458)	ENSNLEG00000034238 #22	ENSNLEG00000030234	UTP4 (ENSNLEG00000005420)	CHTF8 (ENSNLEG00000005415)	HAS3 (ENSNLEG00000005404)	TANGO6 (ENSNLEG00000005380)	CDH1 (ENSNLEG00000005326)	CDH3 (ENSNLEG00000005301)	ENSNLEG00000029786	ZFP90 (ENSNLEG00000005294)	ENSNLEG00000034725	SMPD3 (ENSNLEG00000005281)	PRMT7 (ENSNLEG00000005240)	ENSNLEG00000031669	SLC7A6OS (ENSNLEG00000005228)	SLC7A6 (ENSNLEG00000028930)
Gibbon	MODERN SPECIES	19	PSTPIP2 (ENSNLEG00000010965)	ATP5F1A (ENSNLEG00000010973)	HAUS1 (ENSNLEG00000011216)	C18orf25 (ENSNLEG00000011251)	RNF165 (ENSNLEG00000011270)	LOXHD1 (ENSNLEG00000011276)	ST8SIA5 (ENSNLEG00000011343)	PIAS2 (ENSNLEG00000011351)	ENSNLEG00000032966	ENSNLEG00000031576	ENSNLEG00000034552	ENSNLEG00000026544	ELOA2 (ENSNLEG00000011422)	KATNAL2 (ENSNLEG00000011402)	HDHD2 (ENSNLEG00000036069)	ENSNLEG00000029962 #22	IER3IP1 (ENSNLEG00000011450)	ENSNLEG00000029297	ENSNLEG00000029516	ENSNLEG00000011462	SMAD2 (ENSNLEG00000011463)	ZBTB7C (ENSNLEG00000011492)	ENSNLEG00000011500	ENSNLEG00000030200	CTIF (ENSNLEG00000011503)	SMAD7 (ENSNLEG00000034951)	ENSNLEG00000032202	ENSNLEG00000011539	C18orf32 (ENSNLEG00000011553)	ENSNLEG00000029836	ENSNLEG00000034341
Hominidae	ANCESTRAL SPECIES	15	ENSGT00910000147347	ENSGT00940000155059.e #8	ENSGT00940000154502.g.b.a #9	ENSGT00940000153141.B.a #11	ENSGT00940000153876.B.j.a.b.a	ENSGT00520000055567.a.a.b #12	ENSGT00950000183056.B.b #13	ENSGT00840000130804 #14	ENSGT00940000160216 #15	ENSGT00390000005254.i.a.b.n.a	ENSGT00950000183149.A #16	ENSGT00940000156731 #17	ENSGT00390000001029 #19	ENSGT00940000159246 #20	ENSGT00940000160233 #21	ENSGT00390000003248.a.a.a.b #22	ENSGT00940000158011 #24	ENSGT00390000018056 #25	ENSGT00390000011782 #26	ENSGT01070000253766.A.b	ENSGT00940000155263.v	ENSGT00940000154242.b #27	ENSGT00390000015600.c.a.e	ENSGT00940000156694	ENSGT00440000038159.o.b	ENSGT00390000009040 #29	ENSGT00940000154185.l.a.a #30	ENSGT00940000154185.l.a.b #30	ENSGT00940000155121 #31	ENSGT00940000159123 #32	ENSGT00390000003289 #33
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	13	ENSGT00940000155059.e #8	ENSGT00940000154502.g.b.a #9	ENSGT00940000153141.B.a #11	ENSGT00520000055567.a.a.b.d #12	ENSGT00940000153876.B.j.a.b.a	ENSGT00520000055567.a.a.b.c.a #12	ENSGT00950000183056.B.b #13	ENSGT00840000130804 #14	ENSGT00910000148739	ENSGT00940000160216 #15	ENSGT00950000183149.A #16	ENSGT00940000156731 #17	ENSGT00390000001029 #19	ENSGT00940000159246 #20	ENSGT00940000160233 #21	ENSGT00390000003248.a.a.a.b #22	ENSGT00940000158011 #24	ENSGT00390000018056 #25	ENSGT00390000011782 #26	ENSGT01070000253766.A.b	ENSGT00940000155263.v	ENSGT00940000154242.b #27	ENSGT00390000015600.c.a.f.c.b	ENSGT00940000156694	ENSGT00440000038159.o.b	ENSGT00390000009040 #29	ENSGT00940000154185.l.a.a #30	ENSGT00940000154185.l.a.b.a #30	ENSGT00940000155121 #31	ENSGT00940000159123 #32	ENSGT00390000003289 #33
Homo/Pan group	ANCESTRAL SPECIES	12	ENSGT00940000155059.f.b #8	ENSGT00940000154502.h #9	ENSGT00940000153141.B.a #11	ENSGT00520000055567.a.a.b.d #12	ENSGT00940000153876.B.j.a.b.a	ENSGT00520000055567.a.a.b.c.a #12	ENSGT00950000183056.B.b #13	ENSGT00840000130804 #14	ENSGT00910000148739	ENSGT00940000160216 #15	ENSGT00950000183149.A #16	ENSGT00940000156731 #17	ENSGT00390000001029 #19	ENSGT00940000159246 #20	ENSGT00940000160233 #21	ENSGT00390000003248.a.a.a.b #22	ENSGT00940000158011 #24	ENSGT00390000018056 #25	ENSGT00390000011782 #26	ENSGT01070000253766.A.b	ENSGT00940000154242.b #27	ENSGT00390000015600.c.a.f.c.b	ENSGT00940000156694	ENSGT00440000038159.o.b	ENSGT00390000009040 #29	ENSGT00940000154185.l.a.a #30	ENSGT00940000154185.l.a.b.a #30	ENSGT00940000155121 #31	ENSGT00940000159123 #32	ENSGT00390000003289 #33	ENSGT00940000157341 #34
Human	MODERN SPECIES	20	CHD7 (ENSG00000171316)	RAB2A (ENSG00000104388)	CA8 (ENSG00000178538)	TOX (ENSG00000198846)	NSMAF (ENSG00000035681) #8	SDCBP (ENSG00000137575) #9	CYP7A1 (ENSG00000167910) #11	UBXN2B (ENSG00000215114) #12	FAM110B (ENSG00000169122) #13	BPNT2 (ENSG00000104331) #15	PENK (ENSG00000181195) #16	SDR16C5 (ENSG00000170786) #17	CHCHD7 (ENSG00000170791) #19	PLAG1 (ENSG00000181690) #20	MOS (ENSG00000172680) #21	RPS20 (ENSG00000008988) #22	LYN (ENSG00000254087) #24	TGS1 (ENSG00000137574) #25	TMEM68 (ENSG00000167904) #26	XKR4 (ENSG00000206579)	RP1 (ENSG00000104237) #27	SOX17 (ENSG00000164736)	MRPL15 (ENSG00000137547) #29	LYPLA1 (ENSG00000120992) #30	TCEA1 (ENSG00000187735) #31	RGS20 (ENSG00000147509) #32	ATP6V1H (ENSG00000047249) #33	OPRK1 (ENSG00000082556) #34	NPBWR1 (ENSG00000288611) #35	RB1CC1 (ENSG00000023287) #36	ALKAL1 (ENSG00000196711) #37
Pan	ANCESTRAL SPECIES																	ENSGT00390000003248.a.a.a.b #22
Bonobo	DUPLICATION
Bonobo	MODERN SPECIES	18	FAM174A (ENSPPAG00000021592)	ST8SIA4 (ENSPPAG00000033695)	ENSPPAG00000024337	SLCO4C1 (ENSPPAG00000043922)	SLCO6A1 (ENSPPAG00000026067)	PAM (ENSPPAG00000029053)	ENSPPAG00000034972	GIN1 (ENSPPAG00000034818)	PPIP5K2 (ENSPPAG00000027206)	MACIR (ENSPPAG00000021533)	NUDT12 (ENSPPAG00000036756)	ENSPPAG00000030911	EFNA5 (ENSPPAG00000014646)	ENSPPAG00000029397	ENSPPAG00000028652	ENSPPAG00000035591 #22	FER (ENSPPAG00000039597)	ENSPPAG00000043941	ENSPPAG00000035716	PJA2 (ENSPPAG00000039234)	MAN2A1 (ENSPPAG00000037961)	ENSPPAG00000036482	ENSPPAG00000001922	TMEM232 (ENSPPAG00000039615)	SLC25A46 (ENSPPAG00000042617)	ENSPPAG00000029536	TSLP (ENSPPAG00000037495)	ENSPPAG00000043068	WDR36 (ENSPPAG00000023560)	ENSPPAG00000029092	CAMK4 (ENSPPAG00000041231)
Bonobo	DUPLICATION
Bonobo	MODERN SPECIES	14				PAX8 (ENSPPAG00000031225)	PSD4 (ENSPPAG00000033376)	IL1RN (ENSPPAG00000015989)	IL1F10 (ENSPPAG00000043667)	IL36RN (ENSPPAG00000041031)	IL36A (ENSPPAG00000029741)	IL36G (ENSPPAG00000043332)	IL1B (ENSPPAG00000040259)	IL1A (ENSPPAG00000032352)	CKAP2L (ENSPPAG00000028692)	NT5DC4 (ENSPPAG00000042503)	SLC20A1 (ENSPPAG00000028697)	ENSPPAG00000040293 #22	ENSPPAG00000044134	POLR1B (ENSPPAG00000002774)	TTL (ENSPPAG00000031340)	ZC3H6 (ENSPPAG00000030495)	ZC3H8 (ENSPPAG00000028071)	FBLN7 (ENSPPAG00000031204)	TMEM87B (ENSPPAG00000029775)	ENSPPAG00000008003	MERTK (ENSPPAG00000030353)	ENSPPAG00000005462	BCL2L11 (ENSPPAG00000040431)	ACOXL (ENSPPAG00000039043)	BUB1 (ENSPPAG00000039224)	ENSPPAG00000011690	ENSPPAG00000042220
Bonobo	MODERN SPECIES	22	ENSPPAG00000040048	VPS13A (ENSPPAG00000005660)	ENSPPAG00000041248	PRUNE2 (ENSPPAG00000030555)	GCNT1 (ENSPPAG00000018525)	RFK (ENSPPAG00000044017)	PCSK5 (ENSPPAG00000027360)	OSTF1 (ENSPPAG00000039936)	NMRK1 (ENSPPAG00000033100)	CARNMT1 (ENSPPAG00000038872)	ENSPPAG00000035253	TRPM6 (ENSPPAG00000030433)	RORB (ENSPPAG00000027216)	ANXA1 (ENSPPAG00000030576)	ALDH1A1 (ENSPPAG00000027865)	ENSPPAG00000042355 #22	TMC1 (ENSPPAG00000032378)	ENSPPAG00000015947	ZFAND5 (ENSPPAG00000027676)	GDA (ENSPPAG00000038576)	ENSPPAG00000012888	ENSPPAG00000039954	ABHD17B (ENSPPAG00000033499)	CEMIP2 (ENSPPAG00000042282)	TRPM3 (ENSPPAG00000031896)	KLF9 (ENSPPAG00000039025)	ENSPPAG00000010462	MAMDC2 (ENSPPAG00000033004)	CFAP95 (ENSPPAG00000027896)	PTAR1 (ENSPPAG00000027910)	ENSPPAG00000041522
Platyrrhini	ANCESTRAL SPECIES	17	ENSGT00940000158863	ENSGT00940000159497	ENSGT00940000155059 #8	ENSGT00940000154502 #9	ENSGT00940000153141.B.a #11	ENSGT00520000055567.a.a.b #12	ENSGT00950000183056.B.b #13	ENSGT00940000160216 #15	ENSGT00940000153571.a.eb	ENSGT00950000183149.A #16	ENSGT00940000163618	ENSGT00940000156731 #17	ENSGT00390000001029 #19	ENSGT00940000159246 #20	ENSGT00940000160233 #21	ENSGT00390000003248.a.a.a.b #22	ENSGT00390000003248.a.a.a.a.b ##22	ENSGT00940000158011 #24	ENSGT00390000018056 #25	ENSGT00390000011782 #26	ENSGT01070000253766.A.b	ENSGT00940000154242.b #27	ENSGT00390000015600.c.a.e	ENSGT00940000156694	ENSGT00390000009040 #29	ENSGT00940000154185.m #30	ENSGT00940000155121 #31	ENSGT00940000159123 #32	ENSGT00390000003289 #33	ENSGT00940000157341 #34	ENSGT00940000161936 #35
Cebidae	ANCESTRAL SPECIES	19	ENSGT00940000158863	ENSGT00940000159497	ENSGT00940000155059 #8	ENSGT00940000154502 #9	ENSGT00940000153141.B.a #11	ENSGT00520000055567.a.a.b #12	ENSGT00950000183056.B.b #13	ENSGT00940000160216 #15	ENSGT00940000153571.a.eb	ENSGT00950000183149.A #16	ENSGT00940000163618	ENSGT00940000156731 #17	ENSGT00390000001029 #19	ENSGT00940000159246 #20	ENSGT00940000160233 #21	ENSGT00390000003248.a.a.a.b #22	ENSGT00390000003248.a.a.a.a.b ##22	ENSGT00940000158011 #24	ENSGT00390000018056 #25	ENSGT00390000011782 #26	ENSGT01070000253766.A.b	ENSGT00940000154242.b #27	ENSGT00390000009040.l #29	ENSGT00390000015600.c.a.e	ENSGT00940000156694	ENSGT00390000009040.k.a #29	ENSGT00940000154185.m #30	ENSGT00940000155121 #31	ENSGT00940000159123 #32	ENSGT00390000003289 #33	ENSGT00940000157341 #34
Marmoset	MODERN SPECIES	21															ANHX (ENSCJAG00000002388)	ENSCJAG00000085636 #22	ZNF268 (ENSCJAG00000013112)	ZNF891 (ENSCJAG00000023027)	ZNF140 (ENSCJAG00000076252)	ZNF84 (ENSCJAG00000059441)	ZNF26 (ENSCJAG00000013090)	ZNF605 (ENSCJAG00000013074)	CHFR (ENSCJAG00000013030)	ENSCJAG00000078028	GOLGA3 (ENSCJAG00000013000)	ANKLE2 (ENSCJAG00000012978)	ENSCJAG00000041324	ENSCJAG00000041980	ENSCJAG00000023026	POLE (ENSCJAG00000012853)	P2RX2 (ENSCJAG00000012817)
Cebidae_a	ANCESTRAL SPECIES	182															ENSGT00940000160233 #21	ENSGT00390000003248.a.a.a.b #22
Capuchin	DUPLICATION
Capuchin	MODERN SPECIES	73									ENSCCAG00000019923	PENK (ENSCCAG00000035952) #16	SDR16C5 (ENSCCAG00000032603) #17	CHCHD7 (ENSCCAG00000029296) #19	PLAG1 (ENSCCAG00000038024) #20	ENSCCAG00000026535	MOS (ENSCCAG00000011184) #21	RPS20 (ENSCCAG00000023603) #22	ENSCCAG00000034786	LYN (ENSCCAG00000026427) #24	TGS1 (ENSCCAG00000030476) #25	TMEM68 (ENSCCAG00000037608) #26	XKR4 (ENSCCAG00000032075)	RP1 (ENSCCAG00000030036) #27	ENSCCAG00000030682	SOX17 (ENSCCAG00000034190)	ENSCCAG00000032567	ENSCCAG00000018866 ##22	ENSCCAG00000000796	ENSCCAG00000036893 #29	ENSCCAG00000023731 #30	TCEA1 (ENSCCAG00000018619) #31	RGS20 (ENSCCAG00000029095) #32
Capuchin	MODERN SPECIES	109						CFAP418 (ENSCCAG00000029098)	PLEKHF2 (ENSCCAG00000019372)	NDUFAF6 (ENSCCAG00000030934)	TP53INP1 (ENSCCAG00000026030)	CCNE2 (ENSCCAG00000020230)	INTS8 (ENSCCAG00000037448)	ENSCCAG00000028912	DPY19L4 (ENSCCAG00000032282)	ENSCCAG00000028859	ESRP1 (ENSCCAG00000021066)	ENSCCAG00000009664 #22	VIRMA (ENSCCAG00000036600)	RAD54B (ENSCCAG00000011754)	GEM (ENSCCAG00000005600)	CDH17 (ENSCCAG00000028997)	ENSCCAG00000033599	PDP1 (ENSCCAG00000036931)	ENSCCAG00000021460	TMEM67 (ENSCCAG00000026829)	CIBAR1 (ENSCCAG00000034321)	TRIQK (ENSCCAG00000021343)	RUNX1T1 (ENSCCAG00000025365)	SLC26A7 (ENSCCAG00000017342)	LRRC69 (ENSCCAG00000032597)	OTUD6B (ENSCCAG00000027195)	PIP4P2 (ENSCCAG00000026867)
Bolivian squirrel monkey	DUPLICATION
Bolivian squirrel monkey	MODERN SPECIES	119	LTK (ENSSBOG00000020788)	ITPKA (ENSSBOG00000020388)	RTF1 (ENSSBOG00000034017)	NDUFAF1 (ENSSBOG00000026366)	NUSAP1 (ENSSBOG00000021334)	OIP5 (ENSSBOG00000031279)	CHP1 (ENSSBOG00000030633)	EXD1 (ENSSBOG00000024842)	INO80 (ENSSBOG00000023493)	ENSSBOG00000018259	CHAC1 (ENSSBOG00000013242)	DLL4 (ENSSBOG00000034833)	VPS18 (ENSSBOG00000031303)	RHOV (ENSSBOG00000019703)	SPINT1 (ENSSBOG00000025282)	ENSSBOG00000012627 #22	ENSSBOG00000030630	ZFYVE19 (ENSSBOG00000030932)	ENSSBOG00000032474	C15orf62 (ENSSBOG00000019131)	GCHFR (ENSSBOG00000031190)	RMDN3 (ENSSBOG00000024868)	RAD51 (ENSSBOG00000022885)	KNL1 (ENSSBOG00000028937)	ENSSBOG00000033044	RPUSD2 (ENSSBOG00000035031)	CCDC32 (ENSSBOG00000031392)	ENSSBOG00000006100	BAHD1 (ENSSBOG00000031940)	IVD (ENSSBOG00000033803)	ENSSBOG00000035522
Bolivian squirrel monkey	MODERN SPECIES	206	LZTR1 (ENSSBOG00000025324)	AIFM3 (ENSSBOG00000024530)	CRKL (ENSSBOG00000025677)	ENSSBOG00000031068	SNAP29 (ENSSBOG00000024243)	SERPIND1 (ENSSBOG00000029675)	PI4KA (ENSSBOG00000020419)	ENSSBOG00000029430	HIC2 (ENSSBOG00000026991)	ENSSBOG00000022483	YDJC (ENSSBOG00000029769)	CCDC116 (ENSSBOG00000025610)	SDF2L1 (ENSSBOG00000028571)	PPIL2 (ENSSBOG00000026597)	YPEL1 (ENSSBOG00000025556)	ENSSBOG00000023529 #22	MAPK1 (ENSSBOG00000028316)	ENSSBOG00000022395	PPM1F (ENSSBOG00000024402)	ENSSBOG00000021563	ENSSBOG00000022927	ENSSBOG00000017703	ENSSBOG00000030994	ENSSBOG00000024053
Bolivian squirrel monkey	MODERN SPECIES	51							STBD1 (ENSSBOG00000030295)	CCDC158 (ENSSBOG00000033721)	ENSSBOG00000021934	ENSSBOG00000033914	SHROOM3 (ENSSBOG00000018112)	SEPTIN11 (ENSSBOG00000020488)	ENSSBOG00000025539	CCNI (ENSSBOG00000035507)	ENSSBOG00000035303	ENSSBOG00000017033 #22	CCNG2 (ENSSBOG00000020531)	ENSSBOG00000020872	ENSSBOG00000020463	ENSSBOG00000034318	CXCL13 (ENSSBOG00000027580)	CNOT6L (ENSSBOG00000028521)	ENSSBOG00000005784	ENSSBOG00000020474	FRAS1 (ENSSBOG00000034612)	ENSSBOG00000033139	ANXA3 (ENSSBOG00000035199)	BMP2K (ENSSBOG00000026807)	PAQR3 (ENSSBOG00000018736)	ENSSBOG00000026056	ANTXR2 (ENSSBOG00000028910)
Mas night monkey	DUPLICATION
Mas night monkey	MODERN SPECIES	1366	SPART (ENSANAG00000031821)	CCDC169 (ENSANAG00000027605)	SOHLH2 (ENSANAG00000027740)	ENSANAG00000034415	NBEA (ENSANAG00000035835)	MAB21L1 (ENSANAG00000006106)	ENSANAG00000013822	RFC3 (ENSANAG00000020441)	ENSANAG00000025512	ENSANAG00000029740	STARD13 (ENSANAG00000018248)	ENSANAG00000030076	KL (ENSANAG00000028905)	PDS5B (ENSANAG00000020920)	ENSANAG00000037444	ENSANAG00000011089 #22	ENSANAG00000019223	N4BP2L1 (ENSANAG00000029400)	BRCA2 (ENSANAG00000025577)	ZAR1L (ENSANAG00000037320)	FRY (ENSANAG00000030749)	ENSANAG00000031194	RXFP2 (ENSANAG00000034315)
Mas night monkey	MODERN SPECIES	561																ENSANAG00000031741 #22	PTEN (ENSANAG00000033430)	KLLN (ENSANAG00000033415)	ATAD1 (ENSANAG00000029977)	PAPSS2 (ENSANAG00000035795)	MINPP1 (ENSANAG00000035646)	ENSANAG00000030500	ENSANAG00000030316	ENSANAG00000029474	SGMS1 (ENSANAG00000020922)	ENSANAG00000030762	A1CF (ENSANAG00000019974)	ENSANAG00000027508	PRKG1 (ENSANAG00000026052)	DKK1 (ENSANAG00000020791)	ENSANAG00000025343
Tarsier	DUPLICATION
Tarsier	MODERN SPECIES	3082															COL25A1 (ENSTSYG00000012855)	ENSTSYG00000025797 #22	ETNPPL (ENSTSYG00000004285)	OSTC (ENSTSYG00000035920)	RPL34 (ENSTSYG00000001781)	ENSTSYG00000027966
Tarsier	MODERN SPECIES	6006				KIF14 (ENSTSYG00000008740)	DDX59 (ENSTSYG00000013832)	CAMSAP2 (ENSTSYG00000008900)	INAVA (ENSTSYG00000005312)	KIF21B (ENSTSYG00000006540)	CACNA1S (ENSTSYG00000002790)	TMEM9 (ENSTSYG00000001525)	ENSTSYG00000033602	PKP1 (ENSTSYG00000004506)	TNNT2 (ENSTSYG00000036459)	LAD1 (ENSTSYG00000009029)	TNNI1 (ENSTSYG00000037146)	RPS20 (ENSTSYG00000030243) #22	PHLDA3 (ENSTSYG00000028139)	CSRP1 (ENSTSYG00000006136)	NAV1 (ENSTSYG00000014353)	IPO9 (ENSTSYG00000009534)	SHISA4 (ENSTSYG00000033087)	LMOD1 (ENSTSYG00000029478)	TIMM17A (ENSTSYG00000011606)	RNPEP (ENSTSYG00000029079)	ELF3 (ENSTSYG00000002998)
Tarsier	MODERN SPECIES	1105																RPS20 (ENSTSYG00000033137) #22	LYN (ENSTSYG00000000607) #24
Atlantogenata	ANCESTRAL SPECIES	20	ENSGT00940000153649.A	ENSGT00940000153886.a.b	ENSGT00940000158863	ENSGT00940000159497	ENSGT00940000155059 #8	ENSGT00940000154502 #9	ENSGT00940000153141.B.a #11	ENSGT00520000055567.a.a.b #12	ENSGT00950000183056.B.b #13	ENSGT00940000160216 #15	ENSGT00950000183149.A #16	ENSGT00940000156731 #17	ENSGT00390000001029 #19	ENSGT00940000159246 #20	ENSGT00940000160233 #21	ENSGT00390000003248.a.a.a.b #22	ENSGT00940000158011 #24	ENSGT00390000018056 #25	ENSGT00390000011782 #26	ENSGT01070000253766.A.b	ENSGT00940000154242.b #27	ENSGT00940000156694	ENSGT00390000009040 #29	ENSGT00940000154185 #30	ENSGT00940000155121 #31	ENSGT00940000159123 #32	ENSGT00390000003289 #33	ENSGT00940000157341 #34	ENSGT00940000161936 #35	ENSGT00390000015871 #36	ENSGT00940000159969.a #37
Xenarthra	ANCESTRAL SPECIES	564												ENSGT00940000156731 #17	ENSGT00390000001029 #19	ENSGT00940000159246 #20	ENSGT00940000160233 #21	ENSGT00390000003248.a.a.a.b #22	ENSGT00940000158011 #24	ENSGT00390000018056 #25	ENSGT00390000011782 #26	ENSGT01070000253766.A.b
Armadillo	DUPLICATION
Armadillo	MODERN SPECIES	1927																ENSDNOG00000033422 #22	EGR2 (ENSDNOG00000048621)	ADO (ENSDNOG00000048738)	ZNF365 (ENSDNOG00000007049)	RTKN2 (ENSDNOG00000038486)	ARID5B (ENSDNOG00000043861)	CABCOCO1 (ENSDNOG00000034594)
Armadillo	MODERN SPECIES	695												SDR16C5 (ENSDNOG00000036542) #17	CHCHD7 (ENSDNOG00000014484) #19	PLAG1 (ENSDNOG00000041438) #20	MOS (ENSDNOG00000008331) #21	ENSDNOG00000034693 #22	LYN (ENSDNOG00000014741) #24	TGS1 (ENSDNOG00000008353) #25	TMEM68 (ENSDNOG00000044009) #26	ENSDNOG00000009644	ENSDNOG00000046187
Armadillo	MODERN SPECIES	1154	ENSDNOG00000009228	VEPH1 (ENSDNOG00000015818)	PTX3 (ENSDNOG00000036438)	ENSDNOG00000031998	CCNL1 (ENSDNOG00000009325)	ENSDNOG00000039650	ENSDNOG00000031446	ENSDNOG00000046381	TIPARP (ENSDNOG00000006676)	ENSDNOG00000048811	ENSDNOG00000000752	KCNAB1 (ENSDNOG00000000745)	ENSDNOG00000038913	ENSDNOG00000019348	GMPS (ENSDNOG00000017772)	ENSDNOG00000040652 #22	SLC33A1 (ENSDNOG00000045008)	C3orf33 (ENSDNOG00000031969)	PLCH1 (ENSDNOG00000008919)	ENSDNOG00000041013
Afrotheria	ANCESTRAL SPECIES	173							ENSGT00940000153141.B.a #11	ENSGT00520000055567.a.a.b #12	ENSGT00950000183056.B.b #13	ENSGT00940000160216 #15	ENSGT00950000183149.A #16	ENSGT00940000156731 #17	ENSGT00390000001029 #19	ENSGT00940000159246 #20	ENSGT00940000160233 #21	ENSGT00390000003248.a.a.a.b #22	ENSGT00940000158011 #24	ENSGT00390000018056 #25	ENSGT00390000011782 #26	ENSGT01070000253766.A.b	ENSGT00940000154242.b #27	ENSGT00940000156694	ENSGT00390000009040 #29	ENSGT00940000154185 #30
Tenrec	DUPLICATION
Tenrec	MODERN SPECIES	12742																ENSETEG00000009392 #22
Tenrec	MODERN SPECIES	190																ENSETEG00000003394 #22
Afrotheria_a	ANCESTRAL SPECIES	175							ENSGT00940000153141.B.a #11	ENSGT00520000055567.a.a.b #12	ENSGT00950000183056.B.b #13	ENSGT00940000160216 #15	ENSGT00950000183149.A #16	ENSGT00940000156731 #17	ENSGT00390000001029 #19	ENSGT00940000159246 #20	ENSGT00940000160233 #21	ENSGT00390000003248.a.a.a.b #22	ENSGT00940000158011 #24	ENSGT00390000018056 #25	ENSGT00390000011782 #26	ENSGT01070000253766.A.b	ENSGT00940000154242.b #27	ENSGT00940000156694	ENSGT00390000009040 #29	ENSGT00940000154185 #30
Hyrax	MODERN SPECIES	8847																RPS20 (ENSPCAG00000004300) #22
Elephant	MODERN SPECIES	557					METRNL (ENSLAFG00000020822)	CYP7A1 (ENSLAFG00000006242) #11	UBXN2B (ENSLAFG00000020868) #12	FAM110B (ENSLAFG00000015139) #13	BPNT2 (ENSLAFG00000004652) #15	PENK (ENSLAFG00000002757) #16	SDR16C5 (ENSLAFG00000013161) #17	CHCHD7 (ENSLAFG00000017177) #19	PLAG1 (ENSLAFG00000013617) #20	MOS (ENSLAFG00000006188) #21	ENSLAFG00000026686	RPS20 (ENSLAFG00000002515) #22	LYN (ENSLAFG00000007811) #24	TGS1 (ENSLAFG00000015386) #25	TMEM68 (ENSLAFG00000014168) #26	XKR4 (ENSLAFG00000008709)	RP1 (ENSLAFG00000022734) #27	SOX17 (ENSLAFG00000028829)	MRPL15 (ENSLAFG00000008830) #29	LYPLA1 (ENSLAFG00000028778) #30	NPBWR1 (ENSLAFG00000001447) #35	RB1CC1 (ENSLAFG00000015909) #36	ST18 (ENSLAFG00000004212)	PCMTD1 (ENSLAFG00000014089)	ENSLAFG00000027761
Marsupialia	ANCESTRAL SPECIES	1	ENSGT00940000153886.a.b.d	ENSGT00940000158863	ENSGT00940000159497	ENSGT00940000155059 #8	ENSGT00940000154502 #9	ENSGT00940000153141.B.a #11	ENSGT00520000055567.a.a.b #12	ENSGT00950000183056.B.b #13	ENSGT00940000160216 #15	ENSGT00950000183149.A #16	ENSGT00940000163618	ENSGT00940000156731 #17	ENSGT00390000001029 #19	ENSGT00940000159246 #20	ENSGT00940000160233 #21	ENSGT00390000003248.a.a.a.b #22	ENSGT00940000158011 #24	ENSGT00390000018056 #25	ENSGT00390000011782 #26	ENSGT01070000253766.A.b	ENSGT00940000154242.b #27	ENSGT00940000156694.rb	ENSGT00390000009040 #29	ENSGT00940000154185 #30	ENSGT00940000155121 #31	ENSGT00940000159123 #32	ENSGT00390000003289 #33	ENSGT00940000157341 #34	ENSGT00940000161936 #35	ENSGT00390000015871 #36	ENSGT00940000159969.a #37
Marsupialia_b	ANCESTRAL SPECIES	2	ENSGT00940000153886.a.b.d	ENSGT00940000158863	ENSGT00940000159497	ENSGT00940000155059 #8	ENSGT00940000154502 #9	ENSGT00940000153141.B.a #11	ENSGT00520000055567.a.a.b #12	ENSGT00950000183056.B.b #13	ENSGT00940000160216 #15	ENSGT00950000183149.A #16	ENSGT00940000163618	ENSGT00940000156731 #17	ENSGT00390000001029 #19	ENSGT00940000159246 #20	ENSGT00940000160233 #21	ENSGT00390000003248.a.a.a.b #22	ENSGT00940000158011 #24	ENSGT00390000018056 #25	ENSGT00390000011782 #26	ENSGT01070000253766.A.b	ENSGT00940000154242.b #27	ENSGT00940000156694.rb	ENSGT00940000156694.qb	ENSGT00390000009040 #29	ENSGT00940000154185 #30	ENSGT00940000155121 #31	ENSGT00940000159123 #32	ENSGT00390000003289 #33	ENSGT00940000157341 #34	ENSGT00940000161936 #35	ENSGT00390000015871 #36
Tasmanian devil	MODERN SPECIES		ENSSHAG00000021182	CA8 (ENSSHAG00000007782)	TOX (ENSSHAG00000007522)	NSMAF (ENSSHAG00000012487) #8	SDCBP (ENSSHAG00000012826) #9	CYP7A1 (ENSSHAG00000013201) #11	UBXN2B (ENSSHAG00000003004) #12	FAM110B (ENSSHAG00000024247) #13	BPNT2 (ENSSHAG00000030599) #15	PENK (ENSSHAG00000022421) #16	ENSSHAG00000024007	SDR16C5 (ENSSHAG00000009512) #17	CHCHD7 (ENSSHAG00000010193) #19	PLAG1 (ENSSHAG00000010371) #20	MOS (ENSSHAG00000030233) #21	RPS20 (ENSSHAG00000031978) #22	LYN (ENSSHAG00000011662) #24	TGS1 (ENSSHAG00000012878) #25	TMEM68 (ENSSHAG00000030996) #26	XKR4 (ENSSHAG00000024606)	ENSSHAG00000009787 #27	ENSSHAG00000011351	ENSSHAG00000027123	MRPL15 (ENSSHAG00000013435) #29	LYPLA1 (ENSSHAG00000027960) #30	ENSSHAG00000025222 #31	ENSSHAG00000023280 #32	ENSSHAG00000026155	ATP6V1H (ENSSHAG00000014375) #33	OPRK1 (ENSSHAG00000032283) #34	NPBWR1 (ENSSHAG00000006572) #35
Diprotodontia	ANCESTRAL SPECIES	1	ENSGT00940000153886.a.b.d	ENSGT00940000158863	ENSGT00940000159497	ENSGT00940000155059 #8	ENSGT00940000154502 #9	ENSGT00940000153141.B.a #11	ENSGT00520000055567.a.a.b #12	ENSGT00950000183056.B.b #13	ENSGT00940000160216 #15	ENSGT00950000183149.A #16	ENSGT00940000163618	ENSGT00940000156731 #17	ENSGT00390000001029 #19	ENSGT00940000159246 #20	ENSGT00940000160233 #21	ENSGT00390000003248.a.a.a.b #22	ENSGT00940000158011 #24	ENSGT00390000018056 #25	ENSGT00390000011782 #26	ENSGT00940000154242.b #27	ENSGT00390000009040 #29	ENSGT00940000154185 #30	ENSGT00940000155121 #31	ENSGT00940000159123 #32	ENSGT00390000003289 #33	ENSGT00940000157341 #34	ENSGT00940000161936 #35	ENSGT00390000015871 #36	ENSGT00940000159969.a #37	ENSGT00940000177933	ENSGT00940000159905
Wallaby	MODERN SPECIES	11075																RPS20 (ENSMEUG00000014171) #22
Diprotodontia_a	ANCESTRAL SPECIES		ENSGT00940000153886.a.b.d	ENSGT00940000158863	ENSGT00940000159497	ENSGT00940000155059 #8	ENSGT00940000154502.a #9	ENSGT00940000153141.B.a #11	ENSGT00520000055567.a.a.b #12	ENSGT00950000183056.B.b #13	ENSGT00940000160216 #15	ENSGT00950000183149.A #16	ENSGT00940000163618	ENSGT00940000156731 #17	ENSGT00390000001029 #19	ENSGT00940000159246 #20	ENSGT00940000160233 #21	ENSGT00390000003248.a.a.a.b #22	ENSGT00940000158011 #24	ENSGT00390000018056 #25	ENSGT00390000011782 #26	ENSGT00940000154242.b #27	ENSGT00390000009040 #29	ENSGT00940000154185 #30	ENSGT00940000155121 #31	ENSGT00940000159123 #32	ENSGT00390000003289 #33	ENSGT00940000157341 #34	ENSGT00940000161936 #35	ENSGT00390000015871 #36	ENSGT00940000159969.a #37	ENSGT00940000177933	ENSGT00940000159905
koala	MODERN SPECIES	110	ENSPCIG00000000024	CA8 (ENSPCIG00000000022)	ENSPCIG00000000020	TOX (ENSPCIG00000032348)	NSMAF (ENSPCIG00000000016) #8	SDCBP (ENSPCIG00000000015) #9	CYP7A1 (ENSPCIG00000005169) #11	UBXN2B (ENSPCIG00000005156) #12	FAM110B (ENSPCIG00000013271) #13	BPNT2 (ENSPCIG00000013018) #15	PENK (ENSPCIG00000016638) #16	SDR16C5 (ENSPCIG00000011567) #17	CHCHD7 (ENSPCIG00000011568) #19	PLAG1 (ENSPCIG00000011571) #20	MOS (ENSPCIG00000011573) #21	RPS20 (ENSPCIG00000011576) #22	LYN (ENSPCIG00000016237) #24	TGS1 (ENSPCIG00000016232) #25	TMEM68 (ENSPCIG00000016228) #26	ENSPCIG00000011774	ENSPCIG00000011781	ENSPCIG00000011782	ENSPCIG00000024928	MRPL15 (ENSPCIG00000011783) #29	LYPLA1 (ENSPCIG00000011784) #30	ENSPCIG00000011786 #31	ENSPCIG00000011787 #32	ATP6V1H (ENSPCIG00000011788) #33	OPRK1 (ENSPCIG00000011789) #34	NPBWR1 (ENSPCIG00000016798) #35	ENSPCIG00000030880
Common wonbat	DUPLICATION
Common wonbat	MODERN SPECIES	1064	ABCC9 (ENSVURG00010016276)	KCNJ8 (ENSVURG00010016410)	LDHB (ENSVURG00010016421)	GYS2 (ENSVURG00010016441)	ENSVURG00010016461	GOLT1B (ENSVURG00010016474)	RECQL (ENSVURG00010016484)	PYROXD1 (ENSVURG00010016502)	ENSVURG00010016537	SLCO1A2 (ENSVURG00010016568)	ENSVURG00010016769	SLCO1C1 (ENSVURG00010016901)	PDE3A (ENSVURG00010016911)	AEBP2 (ENSVURG00010016921)	PLEKHA5 (ENSVURG00010016942)	ENSVURG00010017008 #22	CAPZA3 (ENSVURG00010017010)	PLCZ1 (ENSVURG00010017021)	ENSVURG00010017090	ENSVURG00010017100	LMO3 (ENSVURG00010017118)	MGST1 (ENSVURG00010017195)	SLC15A5 (ENSVURG00010017212)	DERA (ENSVURG00010017235)	STRAP (ENSVURG00010017251)	EPS8 (ENSVURG00010017309)	PTPRO (ENSVURG00010017425)	RERG (ENSVURG00010017487)	ENSVURG00010017492	PDE6H (ENSVURG00010017494)	ARHGDIB (ENSVURG00010017504)
Common wonbat	MODERN SPECIES	1048	ENSVURG00010020551	ENSVURG00010020540	ENSVURG00010020495 #8	ENSVURG00010020487 #9	ENSVURG00010020451 #11	ENSVURG00010020433 #12	ENSVURG00010020425 #13	ENSVURG00010020408	ENSVURG00010020396 #15	ENSVURG00010020387 #16	ENSVURG00010020378	ENSVURG00010020372 #17	ENSVURG00010020342 #19	ENSVURG00010020326 #20	ENSVURG00010020321 #21	ENSVURG00010020309 #22	ENSVURG00010020295 #24	ENSVURG00010020230 #25	ENSVURG00010020218 #26