Rodentia_A ANCESTRAL SPECIES 11 ENSGT00950000183096.a.b ENSGT01050000244868.a.a.a.b.a.b.b #7 ENSGT00940000162711 #8 ENSGT00940000159996 #9 ENSGT00530000064286 #10 ENSGT00940000155147 #12 ENSGT00390000008457 #13 ENSGT00940000156006 #14 ENSGT00940000162965 #15 ENSGT00910000144273 #16 ENSGT00940000161096 #17 ENSGT00390000015582 #18 ENSGT00390000006998 #19 ENSGT00940000161417 #20 ENSGT00390000013600 #21 ENSGT00940000154416.C.c.a.a.z #22 ENSGT00940000153306.A.a ENSGT00940000160109 ENSGT00940000161216 ENSGT00940000162727 ENSGT00390000012130 ENSGT00940000154254.a ENSGT00950000183002.B.b ENSGT00940000154399.a.a.b ENSGT00390000011559 ENSGT00520000058076 ENSGT01060000248544.a.a.a.a ENSGT00390000011719 ENSGT00940000155188.A ENSGT00940000156654 ENSGT00390000003140.B Hystricomorpha ANCESTRAL SPECIES 7 ENSGT00950000183096.a.b ENSGT01050000244868.a.a.a.b.a.b.b #7 ENSGT00940000162711 #8 ENSGT00940000159996 #9 ENSGT00530000064286 #10 ENSGT00940000155147 #12 ENSGT00390000008457 #13 ENSGT00940000156006 #14 ENSGT00940000162965 #15 ENSGT00910000144273 #16 ENSGT00940000161096 #17 ENSGT00390000015582 #18 ENSGT00390000006998 #19 ENSGT00940000161417 #20 ENSGT00390000013600 #21 ENSGT00940000154416.C.c.a.a.z #22 ENSGT00940000153306.A.a ENSGT00940000160109 ENSGT00940000161216 ENSGT00940000162727 ENSGT00390000012130 ENSGT00940000154254.a ENSGT00950000183002.B.b ENSGT00940000154399.b ENSGT00390000011559 ENSGT00520000058076 ENSGT01060000248544.a.a.a.a ENSGT00390000011719 ENSGT00940000155188.A ENSGT00940000156654 ENSGT00940000160949 Hystricomorpha_a ANCESTRAL SPECIES 5 ENSGT00950000183096.a.b ENSGT01050000244868.a.a.a.b.a.b.b #7 ENSGT00940000162711 #8 ENSGT00940000159996 #9 ENSGT00530000064286 #10 ENSGT00940000155147 #12 ENSGT00390000008457 #13 ENSGT00940000156006 #14 ENSGT00940000162965 #15 ENSGT00910000144273 #16 ENSGT00940000161096 #17 ENSGT00390000015582 #18 ENSGT00390000006998 #19 ENSGT00940000161417 #20 ENSGT00390000013600 #21 ENSGT00940000154416.C.c.a.a.z #22 ENSGT00940000153306.A.a ENSGT00940000160109 ENSGT00940000161216 ENSGT00940000162727 ENSGT00390000012130 ENSGT00940000163466 ENSGT00940000154254.a ENSGT00950000183002.B.b ENSGT00940000154399.b ENSGT00390000011559 ENSGT00520000058076 ENSGT01060000248544.a.a.a.a ENSGT00390000011719 ENSGT00940000155188.A ENSGT00940000156654 Guinea pig MODERN SPECIES 93 ENSCPOG00000030642 #7 ZFP37 (ENSCPOG00000038442) #8 SLC31A2 (ENSCPOG00000004493) #9 ENSCPOG00000004499 #10 ENSCPOG00000020396 #11 SLC31A1 (ENSCPOG00000030203) #12 CDC26 (ENSCPOG00000038815) #13 ENSCPOG00000010747 #14 RNF183 (ENSCPOG00000010752) #15 WDR31 (ENSCPOG00000030270) #16 BSPRY (ENSCPOG00000004379) #17 HDHD3 (ENSCPOG00000027501) #18 ALAD (ENSCPOG00000007424) #19 POLE3 (ENSCPOG00000031126) #20 C9orf43 (ENSCPOG00000022817) #21 RGS3 (ENSCPOG00000014542) #22 Hystricomorpha_b ANCESTRAL SPECIES 11 ENSGT00950000183096.a.b ENSGT01050000244868.a.a.a.b.a.b.b #7 ENSGT00940000162711 #8 ENSGT00940000159996 #9 ENSGT00530000064286 #10 ENSGT00940000155147 #12 ENSGT00390000008457 #13 ENSGT00940000156006 #14 ENSGT00940000162965 #15 ENSGT00910000144273 #16 ENSGT00940000161096 #17 ENSGT00390000015582 #18 ENSGT00390000006998 #19 ENSGT00940000161417 #20 ENSGT00390000013600 #21 ENSGT00940000154416.C.c.a.a.z #22 ENSGT00940000153306.A.a ENSGT00940000160109 ENSGT00940000161216 ENSGT00940000163466 ENSGT00940000154254.a ENSGT00950000183002.B.b ENSGT00940000154399.b ENSGT00390000011559 ENSGT00520000058076 ENSGT01060000248544.a.a.a.a ENSGT00390000011719 ENSGT00940000155188.A ENSGT00940000156654 ENSGT00390000003140.B ENSGT00940000160949 Degu DUPLICATION Degu MODERN SPECIES 139 ENSODEG00000017996 #7 ZFP37 (ENSODEG00000018059) #8 SLC31A2 (ENSODEG00000017977) #9 ENSODEG00000018002 #11 FKBP15 (ENSODEG00000018104) #10 SLC31A1 (ENSODEG00000017975) #12 CDC26 (ENSODEG00000017943) #13 PRPF4 (ENSODEG00000018147) #14 RNF183 (ENSODEG00000020483) #15 ENSODEG00000018028 #16 ENSODEG00000018006 BSPRY (ENSODEG00000017950) #17 ALAD (ENSODEG00000017972) #19 ENSODEG00000018013 ENSODEG00000018076 #22 ENSODEG00000017955 #22 ZNF618 (ENSODEG00000017958) AMBP (ENSODEG00000018051) KIF12 (ENSODEG00000017938) COL27A1 (ENSODEG00000018193) AKNA (ENSODEG00000017990) ENSODEG00000017944 ENSODEG00000017983 ENSODEG00000017921 TMEM268 (ENSODEG00000017949) TNFSF15 (ENSODEG00000018009) TNFSF8 (ENSODEG00000018040) TNC (ENSODEG00000018043) ENSODEG00000017893 ENSODEG00000017928 ENSODEG00000017824 Degu MODERN SPECIES 139 ENSODEG00000017996 #7 ZFP37 (ENSODEG00000018059) #8 SLC31A2 (ENSODEG00000017977) #9 ENSODEG00000018002 #11 FKBP15 (ENSODEG00000018104) #10 SLC31A1 (ENSODEG00000017975) #12 CDC26 (ENSODEG00000017943) #13 PRPF4 (ENSODEG00000018147) #14 RNF183 (ENSODEG00000020483) #15 ENSODEG00000018028 #16 ENSODEG00000018006 BSPRY (ENSODEG00000017950) #17 ALAD (ENSODEG00000017972) #19 ENSODEG00000018013 ENSODEG00000018076 #22 ENSODEG00000017955 #22 ZNF618 (ENSODEG00000017958) AMBP (ENSODEG00000018051) KIF12 (ENSODEG00000017938) COL27A1 (ENSODEG00000018193) AKNA (ENSODEG00000017990) ENSODEG00000017944 ENSODEG00000017983 ENSODEG00000017921 TMEM268 (ENSODEG00000017949) TNFSF15 (ENSODEG00000018009) TNFSF8 (ENSODEG00000018040) TNC (ENSODEG00000018043) ENSODEG00000017893 ENSODEG00000017928 Long-tailed chinchilla MODERN SPECIES 126 ENSCLAG00000010750 #7 ZFP37 (ENSCLAG00000009731) #8 SLC31A2 (ENSCLAG00000010018) #9 ENSCLAG00000011886 #11 FKBP15 (ENSCLAG00000010407) #10 SLC31A1 (ENSCLAG00000011837) #12 CDC26 (ENSCLAG00000016290) #13 PRPF4 (ENSCLAG00000013448) #14 RNF183 (ENSCLAG00000013318) #15 WDR31 (ENSCLAG00000011928) #16 BSPRY (ENSCLAG00000010059) #17 HDHD3 (ENSCLAG00000009865) #18 ALAD (ENSCLAG00000011394) #19 POLE3 (ENSCLAG00000012197) #20 C9orf43 (ENSCLAG00000013666) #21 RGS3 (ENSCLAG00000010293) #22 ZNF618 (ENSCLAG00000009818) AMBP (ENSCLAG00000009424) KIF12 (ENSCLAG00000009479) ENSCLAG00000010585 ENSCLAG00000012792 WHRN (ENSCLAG00000011452) ATP6V1G1 (ENSCLAG00000010372) TMEM268 (ENSCLAG00000009513) TEX48 (ENSCLAG00000017361) TNFSF15 (ENSCLAG00000013922) TNFSF8 (ENSCLAG00000015638) TNC (ENSCLAG00000010182) ENSCLAG00000013085 PAPPA (ENSCLAG00000009466) TRIM32 (ENSCLAG00000016547) Naked mole-rat female MODERN SPECIES 3 FKBP15 (ENSHGLG00000010437) #10 ENSHGLG00000035012 SLC31A1 (ENSHGLG00000041702) #12 CDC26 (ENSHGLG00000015200) #13 ENSHGLG00000015191 #14 RNF183 (ENSHGLG00000042759) #15 WDR31 (ENSHGLG00000017015) #16 BSPRY (ENSHGLG00000037574) #17 HDHD3 (ENSHGLG00000036149) #18 ENSHGLG00000003486 ALAD (ENSHGLG00000013865) #19 ENSHGLG00000013710 #20 ENSHGLG00000044954 RGS3 (ENSHGLG00000013220) ##22 ENSHGLG00000050240 ##22 ENSHGLG00000012702 #22 ENSHGLG00000044454 ZNF618 (ENSHGLG00000016960) AMBP (ENSHGLG00000044795) KIF12 (ENSHGLG00000016739) ENSHGLG00000016684 ENSHGLG00000016666 WHRN (ENSHGLG00000016648) ENSHGLG00000033853 ENSHGLG00000040119 ENSHGLG00000019108 TMEM268 (ENSHGLG00000014124) ENSHGLG00000040174 TNFSF15 (ENSHGLG00000049474) TNFSF8 (ENSHGLG00000050949) TNC (ENSHGLG00000019404) Sciuridae ANCESTRAL SPECIES 6 ENSGT00950000183096.a.b ENSGT01050000244868.a.a.a.b.a.b.b #7 ENSGT00940000162711 #8 ENSGT00940000159996 #9 ENSGT00530000064286 #10 ENSGT00940000155147 #12 ENSGT00390000008457 #13 ENSGT00940000156006 #14 ENSGT00940000162965 #15 ENSGT00910000144273 #16 ENSGT00940000161096 #17 ENSGT00390000015582 #18 ENSGT00390000006998 #19 ENSGT00940000161417.e #20 ENSGT00390000013600 #21 ENSGT00940000154416.C.c.a.a.z #22 ENSGT00940000153306.A.a ENSGT00940000160109 ENSGT00940000161216 ENSGT00940000162727 ENSGT00390000012130 ENSGT00940000154254.a ENSGT00950000183002.B.b ENSGT00940000154399.a.a.b ENSGT00390000011559 ENSGT00520000058076 ENSGT01060000248544.a.a.a.a ENSGT00390000011719 ENSGT00940000155188.A ENSGT00940000156654 ENSGT00390000003140.B Marmotini ANCESTRAL SPECIES 1 ENSGT01050000244868.a.a.a.b.a.b.b.u #7 ENSGT01050000244868.a.a.a.b.a.b.b.v #7 ENSGT00940000162711 #8 ENSGT00940000159996 #9 ENSGT00530000064286 #10 ENSGT00940000155147 #12 ENSGT00390000008457 #13 ENSGT00940000156006 #14 ENSGT00940000162965 #15 ENSGT00910000144273 #16 ENSGT00940000161096 #17 ENSGT00390000015582 #18 ENSGT00390000006998 #19 ENSGT00940000161417.e #20 ENSGT00390000013600 #21 ENSGT00940000154416.C.c.a.a.z #22 ENSGT00940000153306.A.a ENSGT00940000160109 ENSGT00940000161216 ENSGT00940000162727 ENSGT00390000012130 ENSGT00940000154254.a ENSGT00950000183002.B.b ENSGT00940000154399.a.a.b ENSGT00390000011559 ENSGT00520000058076 ENSGT01060000248544.a.a.a.a ENSGT00390000011719 ENSGT00940000155188.A ENSGT00940000156654 ENSGT00390000003140.B Alpin marmot MODERN SPECIES 30 ENSMMMG00000001902 ENSMMMG00000001822 #7 ZFP37 (ENSMMMG00000001776) #8 SLC31A2 (ENSMMMG00000001733) #9 FKBP15 (ENSMMMG00000001531) #10 SLC31A1 (ENSMMMG00000001502) #12 CDC26 (ENSMMMG00000001483) #13 PRPF4 (ENSMMMG00000001443) #14 RNF183 (ENSMMMG00000001434) #15 WDR31 (ENSMMMG00000001374) #16 HDHD3 (ENSMMMG00000001302) #18 ALAD (ENSMMMG00000001247) #19 POLE3 (ENSMMMG00000001235) #20 ENSMMMG00000001096 ##22 ENSMMMG00000001058 ##22 ENSMMMG00000001049 #22 ZNF618 (ENSMMMG00000000985) AMBP (ENSMMMG00000000972) KIF12 (ENSMMMG00000000890) ENSMMMG00000000864 ENSMMMG00000000751 AKNA (ENSMMMG00000000558) WHRN (ENSMMMG00000000441) ENSMMMG00000000396 TMEM268 (ENSMMMG00000000376) Marmotini_b ANCESTRAL SPECIES 2 ENSGT00950000183096.a.b ENSGT01050000244868.a.a.a.b.a.b.b.u #7 ENSGT00940000162711 #8 ENSGT00940000159996 #9 ENSGT00530000064286 #10 ENSGT00940000155147 #12 ENSGT00390000008457 #13 ENSGT00940000156006 #14 ENSGT00940000162965 #15 ENSGT00910000144273 #16 ENSGT00940000161096 #17 ENSGT00390000015582 #18 ENSGT00390000006998 #19 ENSGT00940000161417.e #20 ENSGT00390000013600 #21 ENSGT00940000154416.C.c.a.a.z #22 ENSGT00940000153306.A.a ENSGT00940000160109 ENSGT00940000161216 ENSGT00940000162727 ENSGT00390000012130 ENSGT00940000154254.a ENSGT00950000183002.B.b ENSGT00940000154399.a.a.b ENSGT00390000011559 ENSGT00520000058076 ENSGT01060000248544.a.a.a.a ENSGT00390000011719 ENSGT00940000155188.A ENSGT00940000156654 ENSGT00390000003140.B Squirrel MODERN SPECIES 813 ENSSTOG00000022533 #22 Arctic ground squirrel MODERN SPECIES 119 ZFP37 (ENSUPAG00010015187) #8 SLC31A2 (ENSUPAG00010015226) #9 FKBP15 (ENSUPAG00010015252) #10 SLC31A1 (ENSUPAG00010015443) #12 CDC26 (ENSUPAG00010015458) #13 PRPF4 (ENSUPAG00010015477) #14 RNF183 (ENSUPAG00010015496) #15 WDR31 (ENSUPAG00010015504) #16 BSPRY (ENSUPAG00010015543) #17 HDHD3 (ENSUPAG00010015559) #18 ALAD (ENSUPAG00010015562) #19 POLE3 (ENSUPAG00010015574) #20 ENSUPAG00010015581 #21 RGS3 (ENSUPAG00010015591) #22 ZNF618 (ENSUPAG00010015714) AMBP (ENSUPAG00010015750) KIF12 (ENSUPAG00010015773) ENSUPAG00010015806 ENSUPAG00010015855 AKNA (ENSUPAG00010015859) WHRN (ENSUPAG00010015891) ATP6V1G1 (ENSUPAG00010016073) TMEM268 (ENSUPAG00010016078) ENSUPAG00010016096 TNFSF15 (ENSUPAG00010016105) TNFSF8 (ENSUPAG00010016110) TNC (ENSUPAG00010016118) PAPPA (ENSUPAG00010016284) ASTN2 (ENSUPAG00010016323) Eurasian red squirrel MODERN SPECIES 6 ENSSVLG00005019784 #7 ZFP37 (ENSSVLG00005020032) #8 SLC31A2 (ENSSVLG00005020133) #9 FKBP15 (ENSSVLG00005020183) #10 SLC31A1 (ENSSVLG00005020243) #12 CDC26 (ENSSVLG00005020298) #13 PRPF4 (ENSSVLG00005020341) #14 RNF183 (ENSSVLG00005020485) #15 ENSSVLG00005020504 WDR31 (ENSSVLG00005020525) #16 BSPRY (ENSSVLG00005020668) #17 HDHD3 (ENSSVLG00005020733) #18 ALAD (ENSSVLG00005020752) #19 ENSSVLG00005020776 #20 C9orf43 (ENSSVLG00005020838) #21 RGS3 (ENSSVLG00005021031) #22 ZNF618 (ENSSVLG00005021607) AMBP (ENSSVLG00005021664) KIF12 (ENSSVLG00005021767) ENSSVLG00005022134 ENSSVLG00005022198 ENSSVLG00005022323 WHRN (ENSSVLG00005022499) ATP6V1G1 (ENSSVLG00005022536) TMEM268 (ENSSVLG00005022567) TEX48 (ENSSVLG00005022615) ENSSVLG00005022658 TNFSF15 (ENSSVLG00005022687) TNFSF8 (ENSSVLG00005022734) ENSSVLG00005022777 TNC (ENSSVLG00005022957)