Mus	ANCESTRAL SPECIES	3	ENSGT01050000244868.a.a.a.b.a.b.b.p ##8	ENSGT00940000162711 #9	ENSGT00940000159996 #10	ENSGT00530000064286 #11	ENSGT00940000155147 #12	ENSGT00960000189576	ENSGT00390000008457 #13	ENSGT00940000156006 #14	ENSGT00940000162965 #15	ENSGT00910000144273 #16	ENSGT00940000161096 #17	ENSGT00390000015582 #18	ENSGT00390000006998 #19	ENSGT00940000161417 #20	ENSGT00390000013600 #21	ENSGT00940000154416.C.c.a.a.z #22	ENSGT00940000153306.A.a #23	ENSGT00940000160109 #24	ENSGT00940000161216 #25	ENSGT00940000163466 #26	ENSGT00390000012130.i.a #27	ENSGT00390000012130.j.b #28	ENSGT00940000154254.a #29	ENSGT00950000183002.B.b #30	ENSGT00940000154399.b #31	ENSGT00390000011559 #32	ENSGT00520000058076 #33	ENSGT00940000153112.D.j.c.b.a.a #34	ENSGT01060000248544.a.a.a.a #35	ENSGT00390000011719 #36	ENSGT00940000155188.A #37
Shrew mouse	MODERN SPECIES	19	Slc46a2 (MGP_PahariEiJ_G0028406) #7	MGP_PahariEiJ_G0028407 #8	Zfp37 (MGP_PahariEiJ_G0028408) #9	Slc31a2 (MGP_PahariEiJ_G0028409) #10	Fkbp15 (MGP_PahariEiJ_G0028410) #11	Slc31a1 (MGP_PahariEiJ_G0028411) #12	Cdc26 (MGP_PahariEiJ_G0028412) #13	Prpf4 (MGP_PahariEiJ_G0028413) #14	Rnf183 (MGP_PahariEiJ_G0028414) #15	Wdr31 (MGP_PahariEiJ_G0028415) #16	Bspry (MGP_PahariEiJ_G0028416) #17	Hdhd3 (MGP_PahariEiJ_G0028417) #18	Alad (MGP_PahariEiJ_G0028418) #19	Pole3 (MGP_PahariEiJ_G0028419) #20	4933430I17Rik (MGP_PahariEiJ_G0028420) #21	Rgs3 (MGP_PahariEiJ_G0028421) #22	Zfp618 (MGP_PahariEiJ_G0028422) #23	Ambp (MGP_PahariEiJ_G0028423) #24	Kif12 (MGP_PahariEiJ_G0028424) #25	Col27a1 (MGP_PahariEiJ_G0028425) #26	Orm1 (MGP_PahariEiJ_G0028426) #27	Orm2 (MGP_PahariEiJ_G0028428) #28	Akna (MGP_PahariEiJ_G0028429) #29	Whrn (MGP_PahariEiJ_G0028430) #30	Atp6v1g1 (MGP_PahariEiJ_G0028431) #31	MGP_PahariEiJ_G0028432 #32	MGP_PahariEiJ_G0028433 #33	MGP_PahariEiJ_G0028434 #34	Tnfsf15 (MGP_PahariEiJ_G0028435) #35	Tnfsf8 (MGP_PahariEiJ_G0028436) #36	Tnc (MGP_PahariEiJ_G0028437) #37
Mus_A	ANCESTRAL SPECIES	3	ENSGT01050000244868.a.a.a.b.a.b.b.p.b.a ##8	ENSGT00940000162711 #9	ENSGT00940000159996 #10	ENSGT00530000064286 #11	ENSGT00940000155147 #12	ENSGT00960000189576	ENSGT00390000008457 #13	ENSGT00940000156006 #14	ENSGT00940000162965 #15	ENSGT00910000144273 #16	ENSGT00940000161096 #17	ENSGT00390000015582 #18	ENSGT00390000006998 #19	ENSGT00940000161417 #20	ENSGT00390000013600 #21	ENSGT00940000154416.C.c.a.a.z #22	ENSGT00940000153306.A.a #23	ENSGT00940000160109 #24	ENSGT00940000161216 #25	ENSGT00940000163466 #26	ENSGT00390000012130.i.a #27	ENSGT00390000012130.j.b #28	ENSGT00940000154254.a #29	ENSGT00950000183002.B.b #30	ENSGT00940000154399.b #31	ENSGT00390000011559 #32	ENSGT00520000058076 #33	ENSGT00940000153112.D.j.c.b.a.a #34	ENSGT01060000248544.a.a.a.a #35	ENSGT00390000011719 #36	ENSGT00940000155188.A #37
Mus_B	ANCESTRAL SPECIES	5	ENSGT01050000244868.a.a.a.b.a.b.b.p.b.a ##8	ENSGT00940000162711 #9	ENSGT00940000159996 #10	ENSGT00530000064286 #11	ENSGT00940000155147 #12	ENSGT00960000189576	ENSGT00390000008457 #13	ENSGT00940000156006 #14	ENSGT00940000162965 #15	ENSGT00910000144273 #16	ENSGT00940000161096 #17	ENSGT00390000015582 #18	ENSGT00390000006998 #19	ENSGT00940000161417 #20	ENSGT00390000013600 #21	ENSGT00940000154416.C.c.a.a.z #22	ENSGT00940000153306.A.a #23	ENSGT00940000160109 #24	ENSGT00940000161216 #25	ENSGT00940000163466 #26	ENSGT00390000012130.i.a #27	ENSGT00390000012130.j.b #28	ENSGT00940000154254.a #29	ENSGT00950000183002.B.b #30	ENSGT00940000154399.b #31	ENSGT00390000011559 #32	ENSGT00960000192269	ENSGT00520000058076 #33	ENSGT00940000153112.D.j.c.b.a.a #34	ENSGT01060000248544.a.a.a.a #35	ENSGT00390000011719 #36
Mus_C	ANCESTRAL SPECIES	2	ENSGT01050000244868.a.a.a.b.a.b.b.p.a ##8	ENSGT00940000162711 #9	ENSGT00940000159996 #10	ENSGT00530000064286 #11	ENSGT00940000155147 #12	ENSGT00960000189576	ENSGT00390000008457 #13	ENSGT00940000156006 #14	ENSGT00940000162965 #15	ENSGT00910000144273 #16	ENSGT00940000161096 #17	ENSGT00390000015582 #18	ENSGT00390000006998 #19	ENSGT00940000161417 #20	ENSGT00390000013600 #21	ENSGT00940000154416.C.c.a.a.z #22	ENSGT00940000153306.A.a #23	ENSGT00940000160109 #24	ENSGT00940000161216 #25	ENSGT00940000163466 #26	ENSGT00390000012130.i.a #27	ENSGT00390000012130.j.b #28	ENSGT00940000154254.a #29	ENSGT00950000183002.B.b #30	ENSGT00940000154399.b #31	ENSGT00390000011559 #32	ENSGT00960000192269	ENSGT00520000058076 #33	ENSGT00940000153112.D.j.c.b.a.a #34	ENSGT01060000248544.a.a.a.a #35	ENSGT00390000011719 #36
Steppe mouse	MODERN SPECIES	2598													ENSMSIG00000019357	Pole3 (ENSMSIG00000019373) #20	4933430I17Rik (ENSMSIG00000019379) #21	Rgs3 (ENSMSIG00000019410) #22	Zfp618 (ENSMSIG00000019612) #23	Ambp (ENSMSIG00000019800) #24	Kif12 (ENSMSIG00000019818) #25	Col27a1 (ENSMSIG00000019869) #26
spretus	MODERN SPECIES	13	MGP_SPRETEiJ_G0027034 ##8	MGP_SPRETEiJ_G0027035 ##8	Mup20 (MGP_SPRETEiJ_G0027036) #8	Zfp37 (MGP_SPRETEiJ_G0027037) #9	Slc31a2 (MGP_SPRETEiJ_G0027038) #10	Fkbp15 (MGP_SPRETEiJ_G0027039) #11	Slc31a1 (MGP_SPRETEiJ_G0027040) #12	Prpf4 (MGP_SPRETEiJ_G0027042) #14	Rnf183 (MGP_SPRETEiJ_G0027043) #15	Wdr31 (MGP_SPRETEiJ_G0027044) #16	Bspry (MGP_SPRETEiJ_G0027045) #17	Hdhd3 (MGP_SPRETEiJ_G0027046) #18	Alad (MGP_SPRETEiJ_G0027047) #19	Pole3 (MGP_SPRETEiJ_G0027048) #20	4933430I17Rik (MGP_SPRETEiJ_G0027049) #21	Rgs3 (MGP_SPRETEiJ_G0027050) #22	Zfp618 (MGP_SPRETEiJ_G0027051) #23	Ambp (MGP_SPRETEiJ_G0027052) #24	Kif12 (MGP_SPRETEiJ_G0027053) #25	Col27a1 (MGP_SPRETEiJ_G0027054) #26	Orm1 (MGP_SPRETEiJ_G0027055) #27	Akna (MGP_SPRETEiJ_G0027056) #29	Whrn (MGP_SPRETEiJ_G0027057) #30	Atp6v1g1 (MGP_SPRETEiJ_G0027059) #31	Tmem268 (MGP_SPRETEiJ_G0027060) #32	Tex48 (MGP_SPRETEiJ_G0027061) #33	Tnfsf15 (MGP_SPRETEiJ_G0027063) #35	Tnfsf8 (MGP_SPRETEiJ_G0027064) #36	Tnc (MGP_SPRETEiJ_G0027065) #37	Pappa (MGP_SPRETEiJ_G0027066)	Astn2 (MGP_SPRETEiJ_G0027067)
Mouse	MODERN SPECIES	13	Mup3 (ENSMUSG00000066154) ##8	Mup21 (ENSMUSG00000066153) ##8	Zfp37 (ENSMUSG00000028389) #9	Slc31a2 (ENSMUSG00000066152) #10	Fkbp15 (ENSMUSG00000066151) #11	Slc31a1 (ENSMUSG00000066150) #12	Cdc26 (ENSMUSG00000066149) #13	Prpf4 (ENSMUSG00000066148) #14	Rnf183 (ENSMUSG00000063851) #15	Wdr31 (ENSMUSG00000028391) #16	Bspry (ENSMUSG00000028392) #17	Hdhd3 (ENSMUSG00000038422) #18	Alad (ENSMUSG00000028393) #19	Pole3 (ENSMUSG00000028394) #20	4933430I17Rik (ENSMUSG00000058046) #21	Rgs3 (ENSMUSG00000059810) #22	Zfp618 (ENSMUSG00000028358) #23	Ambp (ENSMUSG00000028356) #24	Kif12 (ENSMUSG00000028357) #25	Col27a1 (ENSMUSG00000045672) #26	Orm1 (ENSMUSG00000039196) #27	Orm3 (ENSMUSG00000028359) ##28	Orm2 (ENSMUSG00000061540) #28	Akna (ENSMUSG00000039158) #29	Whrn (ENSMUSG00000039137) #30	Atp6v1g1 (ENSMUSG00000039105) #31	Tmem268 (ENSMUSG00000045917) #32	Tex53 (ENSMUSG00000084782)	Tex48 (ENSMUSG00000058935) #33	Tnfsf15 (ENSMUSG00000050395) #35	Tnfsf8 (ENSMUSG00000028362) #36
Ryukyu mouse	MODERN SPECIES	13	MGP_CAROLIEiJ_G0026070 #8	Mup3 (MGP_CAROLIEiJ_G0026071) ##8	MGP_CAROLIEiJ_G0026072 ##8	Zfp37 (MGP_CAROLIEiJ_G0026073) #9	Slc31a2 (MGP_CAROLIEiJ_G0026074) #10	Fkbp15 (MGP_CAROLIEiJ_G0026075) #11	Slc31a1 (MGP_CAROLIEiJ_G0026076) #12	Prpf4 (MGP_CAROLIEiJ_G0026078) #14	Rnf183 (MGP_CAROLIEiJ_G0026079) #15	Wdr31 (MGP_CAROLIEiJ_G0026080) #16	Bspry (MGP_CAROLIEiJ_G0026081) #17	Hdhd3 (MGP_CAROLIEiJ_G0026082) #18	Alad (MGP_CAROLIEiJ_G0026083) #19	Pole3 (MGP_CAROLIEiJ_G0026084) #20	4933430I17Rik (MGP_CAROLIEiJ_G0026085) #21	Rgs3 (MGP_CAROLIEiJ_G0026086) #22	Zfp618 (MGP_CAROLIEiJ_G0026087) #23	Ambp (MGP_CAROLIEiJ_G0026088) #24	Kif12 (MGP_CAROLIEiJ_G0026089) #25	Col27a1 (MGP_CAROLIEiJ_G0026090) #26	Akna (MGP_CAROLIEiJ_G0026091) #29	Whrn (MGP_CAROLIEiJ_G0026092) #30	Atp6v1g1 (MGP_CAROLIEiJ_G0026093) #31	Tmem268 (MGP_CAROLIEiJ_G0026094) #32	Tex48 (MGP_CAROLIEiJ_G0026095) #33	MGP_CAROLIEiJ_G0026096 #34	Tnfsf15 (MGP_CAROLIEiJ_G0026097) #35	Tnfsf8 (MGP_CAROLIEiJ_G0026098) #36	Tnc (MGP_CAROLIEiJ_G0026099) #37	Pappa (MGP_CAROLIEiJ_G0026100)	Astn2 (MGP_CAROLIEiJ_G0026101)