Eupercaria	ANCESTRAL SPECIES	14	ENSGT01080000257410.A.f.l #7	ENSGT01050000244841.A.a.b.qb.a.b #9	ENSGT00940000163460.a.a.b	ENSGT00390000009312.b #10	ENSGT00550000074815 #11	ENSGT00390000002211 #12	ENSGT00940000154928.c.a.a #13	ENSGT00940000155500.e #14	ENSGT00950000183149.C.a #15	ENSGT00940000159082 #16	ENSGT00390000016068 #17	ENSGT00390000015400 #18	ENSGT00940000155645.i.b #19	ENSGT00940000154146.b.a.m.a ##20	ENSGT00950000182940.b.a.a.g.b #21	ENSGT00530000063712.a.a.o.b #22	ENSGT00530000063712.a.a.o.a #23	ENSGT00940000154876.a.a.a.b #24	ENSGT00940000154876.a.a.a.a #25	ENSGT00970000193421.C.b #26	ENSGT00940000156682.e.a #27	ENSGT00940000157771 #28	ENSGT00950000182843.a.a.a.b.a.a.a.b #29	ENSGT00390000001424.wb.b	ENSGT00390000000860.a	ENSGT00940000156052.k.a	ENSGT00940000158358.b	ENSGT00930000151452	ENSGT00390000014907.A	ENSGT00950000183037.A.a	ENSGT00390000016435.g.b
Eupecaria_A	ANCESTRAL SPECIES	15	ENSGT01080000257410.A.f.l #7	ENSGT01050000244841.A.a.b.qb.a.b #9	ENSGT00940000163460.a.a.b	ENSGT00390000009312.b #10	ENSGT00550000074815 #11	ENSGT00390000002211 #12	ENSGT00940000154928.c.a.a #13	ENSGT00940000155500.e #14	ENSGT00950000183149.C.a #15	ENSGT00940000159082 #16	ENSGT00390000016068 #17	ENSGT00390000015400 #18	ENSGT00940000155645.i.b #19	ENSGT00940000154146.b.a.m.a ##20	ENSGT00950000182940.b.a.a.g.b #21	ENSGT00530000063712.a.a.o.b #22	ENSGT00530000063712.a.a.o.a #23	ENSGT00940000154876.a.a.a.b #24	ENSGT00940000154876.a.a.a.a #25	ENSGT00970000193421.C.b #26	ENSGT00940000156682.e.a #27	ENSGT00940000157771 #28	ENSGT00950000182843.a.a.a.b.a.a.a.b #29	ENSGT00390000001424.wb.b	ENSGT00390000000860.a	ENSGT00940000156052.k.a	ENSGT00940000158358.b	ENSGT00930000151452	ENSGT00390000014907.A	ENSGT00950000183037.A.a	ENSGT00390000016435.g.b
Eupecaria_B	ANCESTRAL SPECIES	15	ENSGT01080000257410.A.f.l #7	ENSGT01050000244841.A.a.b.qb.a.b #9	ENSGT00940000163460.a.a.b	ENSGT00390000009312.b #10	ENSGT00550000074815 #11	ENSGT00390000002211 #12	ENSGT00940000154928.c.a.a #13	ENSGT00940000155500.e #14	ENSGT00950000183149.C.a #15	ENSGT00940000159082 #16	ENSGT00390000016068 #17	ENSGT00390000015400 #18	ENSGT00940000155645.i.b #19	ENSGT00940000154146.b.a.m.a ##20	ENSGT00950000182940.b.a.a.g.b #21	ENSGT00530000063712.a.a.o.b #22	ENSGT00530000063712.a.a.o.a #23	ENSGT00940000154876.a.a.a.b #24	ENSGT00940000154876.a.a.a.a #25	ENSGT00970000193421.C.b #26	ENSGT00940000156682.e.a #27	ENSGT00940000157771 #28	ENSGT00950000182843.a.a.a.b.a.a.a.b #29	ENSGT00390000001424.wb.b	ENSGT00390000000860.a	ENSGT00940000156052.k.a	ENSGT00940000158358.b	ENSGT00930000151452	ENSGT00390000014907.A	ENSGT00950000183037.A.a	ENSGT00390000016435.g.b
Perciformes	ANCESTRAL SPECIES	15	ENSGT00940000154856.A.b.f #8	ENSGT00940000154720	ENSGT01050000244841.A.a.b.qb.a.b #9	ENSGT00390000009312.b #10	ENSGT00550000074815 #11	ENSGT00390000002211 #12	ENSGT00940000154928.c.a.a #13	ENSGT00940000155500.e #14	ENSGT00950000183149.C.a #15	ENSGT00940000159082 #16	ENSGT00390000016068 #17	ENSGT00390000015400 #18	ENSGT00940000155645.i.b #19	ENSGT00940000154146.b.a.m.b #20	ENSGT00950000182940.b.a.a.g.b #21	ENSGT00530000063712.a.a.o.b #22	ENSGT00530000063712.a.a.o.a #23	ENSGT00940000154876.a.a.a.b #24	ENSGT00940000154876.a.a.a.a #25	ENSGT00970000193421.C.b #26	ENSGT00940000156682.e.a #27	ENSGT00940000157771 #28	ENSGT00950000182843.a.a.a.b.a.a.a.b #29	ENSGT00390000001424.wb.b	ENSGT00390000000860.a	ENSGT00940000156052.k.a	ENSGT00940000158358.b	ENSGT00930000151452	ENSGT00390000014907.A	ENSGT00950000183037.A.a	ENSGT00390000016435.g.b
Perciformes_a	ANCESTRAL SPECIES	13	ENSGT01080000257410.A.f.l #7	ENSGT00940000154856.A.b.f #8	ENSGT01050000244841.A.a.b.qb.a.b #9	ENSGT00390000009312.b #10	ENSGT00550000074815 #11	ENSGT00390000002211 #12	ENSGT00940000154928.c.a.a #13	ENSGT00940000155500.e #14	ENSGT00950000183149.C.a #15	ENSGT00940000159082 #16	ENSGT00390000016068 #17	ENSGT00390000015400 #18	ENSGT00940000155645.i.b #19	ENSGT00940000154146.b.a.m.b #20	ENSGT00950000182940.b.a.a.g.b #21	ENSGT00530000063712.a.a.o.b #22	ENSGT00530000063712.a.a.o.a #23	ENSGT00940000154876.a.a.a.b #24	ENSGT00940000154876.a.a.a.a #25	ENSGT00970000193421.C.b #26	ENSGT00940000156682.e.a #27	ENSGT00940000157771 #28	ENSGT00950000182843.a.a.a.b.a.a.a.b #29	ENSGT00390000001424.wb.b	ENSGT00390000000860.a	ENSGT00940000156052.k.a	ENSGT00940000158358.b	ENSGT00930000151452	ENSGT00390000014907.A	ENSGT00950000183037.A.a	ENSGT00390000016435.g.b
Pike perch	MODERN SPECIES	100	SLCO3A1 (ENSSLUG00000021828) #7	ENSSLUG00000021840 #8	ENSSLUG00000021844 #9	GLO1 (ENSSLUG00000021856) #10	eprs1 (ENSSLUG00000022139) #11	TDP1 (ENSSLUG00000024598) #12	hmbox1a (ENSSLUG00000024645) #13	KIF13B (ENSSLUG00000024720) #14	ENSSLUG00000024959 #15	PDPR (ENSSLUG00000024972) #16	mrps11 (ENSSLUG00000024992) #17	mrpl46 (ENSSLUG00000024994) #18	NTRK3 (ENSSLUG00000024999) #19	ENSSLUG00000025016 #20	sv2ba (ENSSLUG00000025032) #21	mespba (ENSSLUG00000025038) #22	mespaa (ENSSLUG00000025043) #23	ANPEP (ENSSLUG00000025113) #24	ANPEP (ENSSLUG00000025307) #25	ap3s2 (ENSSLUG00000025346) #26	igf1rb (ENSSLUG00000025493) #27	LRRC28 (ENSSLUG00000025824) #28	SNAP25 (ENSSLUG00000025825) #29	ENSSLUG00000025828 #30	MAPK8IP1 (ENSSLUG00000025830) #31
Channel bull blenny	MODERN SPECIES	17	ENSCGOG00000002301	ENSCGOG00000002300	ENSCGOG00000002298	SHANK2 (ENSCGOG00000002295)	CTTN (ENSCGOG00000002061)	ppfia1 (ENSCGOG00000001031)	ENSCGOG00000000982	ENSCGOG00000000971 #15	PDPR (ENSCGOG00000000920) #16	mrps11 (ENSCGOG00000000914) #17	mrpl46 (ENSCGOG00000000913) #18	NTRK3 (ENSCGOG00000000853) #19	ENSCGOG00000000842	ENSCGOG00000000840	sv2ba (ENSCGOG00000000812) #21	mespba (ENSCGOG00000000799) #22	mespaa (ENSCGOG00000000796) #23	ANPEP (ENSCGOG00000000704) #24	ap3s2 (ENSCGOG00000000654) #26	ENSCGOG00000000647 #27	ENSCGOG00000000644	lsm14ab (ENSCGOG00000000640)	ss18l2 (ENSCGOG00000000637)	GARRE1 (ENSCGOG00000000516)	gpib (ENSCGOG00000024133)	wtip (ENSCGOG00000024096)	sdr42e1 (ENSCGOG00000024095)	cnep1r1 (ENSCGOG00000024091)	heatr3 (ENSCGOG00000024017)	tent4b (ENSCGOG00000024003)	adcy7 (ENSCGOG00000023963)
Cottioidei	ANCESTRAL SPECIES	35	ENSGT00940000157540.B	ENSGT01080000257410.A.f.l #7	ENSGT01050000244841.A.a.b.qb.a.b #9	ENSGT00390000009312.b #10	ENSGT00550000074815 #11	ENSGT00390000002211 #12	ENSGT00940000154928.c.a.a #13	ENSGT00940000155500.e #14	ENSGT00950000183149.C.a #15	ENSGT00940000159082 #16	ENSGT00390000016068 #17	ENSGT00390000015400 #18	ENSGT00940000155645.i.b #19	ENSGT00940000154146.b.a.m.b #20	ENSGT00950000182940.b.a.a.g.b #21	ENSGT00530000063712.a.a.o.b #22	ENSGT00530000063712.a.a.o.a #23	ENSGT00940000154876.a.a.a.b #24	ENSGT00940000154876.a.a.a.a #25	ENSGT00970000193421.C.b #26	ENSGT00940000156682.e.a #27	ENSGT00940000157771 #28	ENSGT00950000182843.a.a.a.b.a.a.a.b #29	ENSGT00390000001424.wb.b	ENSGT00390000000860.a	ENSGT00940000156052.k.a	ENSGT00940000158358.b	ENSGT00390000014907.A	ENSGT00950000183037.A.a	ENSGT00390000016435.g.b	ENSGT00940000157431.c.b
Lumpfish	MODERN SPECIES	18	SLCO3A1 (ENSCLMG00005017205) #7	gnrhr2 (ENSCLMG00005017208) #9	GLO1 (ENSCLMG00005017209) #10	eprs1 (ENSCLMG00005017232) #11	TDP1 (ENSCLMG00005017721) #12	hmbox1a (ENSCLMG00005017732) #13	KIF13B (ENSCLMG00005017782) #14	ENSCLMG00005019795 #15	PDPR (ENSCLMG00005019797) #16	mrps11 (ENSCLMG00005019803) #17	mrpl46 (ENSCLMG00005019804) #18	NTRK3 (ENSCLMG00005019805) #19	ENSCLMG00005019807 #20	ENSCLMG00005019811 #20	sv2ba (ENSCLMG00005019819) #21	mespba (ENSCLMG00005019831) #22	mespaa (ENSCLMG00005019833) #23	ANPEP (ENSCLMG00005019880) #24	ANPEP (ENSCLMG00005020525) #25	AP3S2 (ENSCLMG00005020579) #26	igf1rb (ENSCLMG00005020609) #27	LRRC28 (ENSCLMG00005022011) #28	SNAP25 (ENSCLMG00005022015) #29	COX5A (ENSCLMG00005022016)	fam219b (ENSCLMG00005022017)	ENSCLMG00005022018	ENSCLMG00005022020	cyp1a (ENSCLMG00005022023)	EDC3 (ENSCLMG00005000006)	CSK (ENSCLMG00005000057)	cplx3a (ENSCLMG00005000747)
Eupecaria_C	ANCESTRAL SPECIES	11	ENSGT00940000157540.B	ENSGT01080000257410.A.f.l #7	ENSGT01050000244841.A.a.b.qb.a.b #9	ENSGT00390000009312.b #10	ENSGT00550000074815 #11	ENSGT00390000002211 #12	ENSGT00940000154928.c.a.a #13	ENSGT00940000155500.e #14	ENSGT00950000183149.C.a #15	ENSGT00940000159082 #16	ENSGT00390000016068 #17	ENSGT00390000015400 #18	ENSGT00940000155645.i.b #19	ENSGT00940000154146.b.a.m.a ##20	ENSGT00950000182940.b.a.a.g.b #21	ENSGT00530000063712.a.a.o.b #22	ENSGT00530000063712.a.a.o.a #23	ENSGT00940000154876.a.a.a.b #24	ENSGT00940000154876.a.a.a.a #25	ENSGT00970000193421.C.b #26	ENSGT00940000156682.e.a #27	ENSGT00940000157771 #28	ENSGT00950000182843.a.a.a.b.a.a.a.b #29	ENSGT00390000001424.wb.b	ENSGT00390000000860.a	ENSGT00940000156052.k.a	ENSGT00940000158358.b	ENSGT00930000151452	ENSGT00390000014907.A	ENSGT00950000183037.A.a	ENSGT00390000016435.g.b
Gilthead seabream	MODERN SPECIES	18	ENSSAUG00010000136	ENSSAUG00010026017	GLO1 (ENSSAUG00010026016) #10	eprs1 (ENSSAUG00010024284) #11	TDP1 (ENSSAUG00010024086) #12	hmbox1a (ENSSAUG00010024085) #13	KIF13B (ENSSAUG00010024064) #14	ENSSAUG00010024053 #15	PDPR (ENSSAUG00010023846) #16	mrps11 (ENSSAUG00010023841) #17	mrpl46 (ENSSAUG00010023839) #18	NTRK3 (ENSSAUG00010023776) #19	ENSSAUG00010023763 ##20	ENSSAUG00010023754 ##20	sv2ba (ENSSAUG00010023666) #21	mespba (ENSSAUG00010023650) #22	mespaa (ENSSAUG00010023648) #23	ANPEP (ENSSAUG00010023403) #24	ANPEP (ENSSAUG00010023189) #25	ap3s2 (ENSSAUG00010023180) #26	igf1rb (ENSSAUG00010022954) #27	LRRC28 (ENSSAUG00010022944) #28	SNAP25 (ENSSAUG00010022941) #29	COX5a2 (ENSSAUG00010022937)	fam219b (ENSSAUG00010022936)	ENSSAUG00010022934	ENSSAUG00010022931	ENSSAUG00010022923	ENSSAUG00010022922	gatm (ENSSAUG00010022921)	ENSSAUG00010022874
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	7	ENSGT00940000157540.B	ENSGT01080000257410.A.f.l #7	ENSGT01050000244841.A.a.b.qb.a.b #9	ENSGT00390000009312.b #10	ENSGT00550000074815 #11	ENSGT00390000002211 #12	ENSGT00940000154928.c.a.a #13	ENSGT00940000155500.e #14	ENSGT00950000183149.C.a #15	ENSGT00940000159082 #16	ENSGT00390000016068 #17	ENSGT00390000015400 #18	ENSGT00940000155645.i.b #19	ENSGT00940000154146.b.a.m.a ##20	ENSGT00950000182940.b.a.a.g.b #21	ENSGT00530000063712.a.a.o.b #22	ENSGT00530000063712.a.a.o.a #23	ENSGT00940000154876.a.a.a.b #24	ENSGT00940000154876.a.a.a.a #25	ENSGT00970000193421.C.b #26	ENSGT00940000156682.e.a #27	ENSGT00940000157771 #28	ENSGT00950000182843.a.a.a.b.a.a.a.b #29	ENSGT00390000001424.wb.b	ENSGT00390000000860.a	ENSGT00940000156052.k.a	ENSGT00940000158358.b	ENSGT00930000151452	ENSGT00390000014907.A	ENSGT00950000183037.A.a	ENSGT00390000016435.g.b
European seabass	MODERN SPECIES	18	ENSDLAG00005015916	ENSDLAG00005015990 #7	ENSDLAG00005016008 #9	ENSDLAG00005016013 #10	ENSDLAG00005016087 #11	ENSDLAG00005019267 #12	hmbox1a (ENSDLAG00005019491) #13	ENSDLAG00005019529 #14	ENSDLAG00005032823 #15	ENSDLAG00005020209 #16	mrps11 (ENSDLAG00005020360) #17	mrpl46 (ENSDLAG00005020366) #18	NTRK3 (ENSDLAG00005020387) #19	ENSDLAG00005020703 ##20	sv2ba (ENSDLAG00005020743) #21	mespba (ENSDLAG00005033688) #22	ENSDLAG00005021075 #25	ENSDLAG00005021362 #26	igf1rb (ENSDLAG00005021438) #27	ENSDLAG00005030001 #28	ENSDLAG00005028654 #29	ENSDLAG00005023073	ENSDLAG00005029723	ENSDLAG00005023087	ENSDLAG00005030418	ENSDLAG00005023097	ENSDLAG00005023100	CYP1A2 (ENSDLAG00005023109)	ENSDLAG00005030853	CSK (ENSDLAG00005023158)	ENSDLAG00005033157
Large yellow croaker	MODERN SPECIES	480	ENSLCRG00005021657 #8	ENSLCRG00005021656 #9	ENSLCRG00005021655	GLO1 (ENSLCRG00005021653) #10	eprs1 (ENSLCRG00005020114) #11	TDP1 (ENSLCRG00005020076) #12	hmbox1a (ENSLCRG00005020072) #13	KIF13B (ENSLCRG00005017267) #14	ENSLCRG00005017214 #15	PDPR (ENSLCRG00005017184) #16	mrps11 (ENSLCRG00005017180) #17	mrpl46 (ENSLCRG00005017179) #18	NTRK3 (ENSLCRG00005016786) #19	ENSLCRG00005016779 ##20	sv2ba (ENSLCRG00005016553) #21	mespba (ENSLCRG00005016550) #22	mespaa (ENSLCRG00005016549) #23	ANPEP (ENSLCRG00005016136) #24	ANPEP (ENSLCRG00005015914) #25	ap3s2 (ENSLCRG00005015910) #26	igf1rb (ENSLCRG00005012567) #27	LRRC28 (ENSLCRG00005012542) #28	SNAP25 (ENSLCRG00005012537) #29	COX5A (ENSLCRG00005012535)	fam219b (ENSLCRG00005012530)	ENSLCRG00005012528	ENSLCRG00005012524	ENSLCRG00005012522	ENSLCRG00005012520	cyp1a (ENSLCRG00005012519)	edc3 (ENSLCRG00005012518)
Ballan wrasse	DUPLICATION
Ballan wrasse	MODERN SPECIES	1640																ENSLBEG00000009955 #22	ENSLBEG00000009977 #23	ENSLBEG00000010003 #24
Ballan wrasse	MODERN SPECIES	929															sv2ba (ENSLBEG00000006657) #21	ENSLBEG00000006856 #22	ENSLBEG00000006884 #23	ANPEP (ENSLBEG00000007049) #24	ANPEP (ENSLBEG00000007647) #25	ap3s2 (ENSLBEG00000008117) #26
Tetraodontidae	ANCESTRAL SPECIES	46	ENSGT00940000157540.B	ENSGT01080000257410.A.f.l #7	ENSGT01050000244841.A.a.b.qb.a.b #9	ENSGT00390000009312.b #10	ENSGT00550000074815 #11	ENSGT00390000002211 #12	ENSGT00940000154928.c.a.a #13	ENSGT00940000155500.e #14	ENSGT00950000183149.C.a #15	ENSGT00940000159082 #16	ENSGT00390000016068 #17	ENSGT00390000015400 #18	ENSGT00940000155645.i.b #19	ENSGT00940000154146.b.a.m.a ##20	ENSGT00950000182940.b.a.a.g.b #21	ENSGT00530000063712.a.a.o.b #22	ENSGT00530000063712.a.a.o.a #23	ENSGT00940000154876.a.a.a.b #24	ENSGT00940000154876.a.a.a.a #25	ENSGT00970000193421.C.b #26	ENSGT00940000156682.e.a #27	ENSGT00940000157771 #28	ENSGT00950000182843.a.a.a.b.a.a.a.b #29	ENSGT00390000001424.wb.b	ENSGT00390000000860.a	ENSGT00940000156052.k.a	ENSGT00940000158358.b
Fugu	MODERN SPECIES	4	SLCO3A1 (ENSTRUG00000007682) #7	ENSTRUG00000007534 #9	GLO1 (ENSTRUG00000007411) #10	eprs1 (ENSTRUG00000006901) #11	TDP1 (ENSTRUG00000006521) #12	hmbox1a (ENSTRUG00000006366) #13	KIF13B (ENSTRUG00000005689) #14	ENSTRUG00000005668 #15	PDPR (ENSTRUG00000004703) #16	mrps11 (ENSTRUG00000020346) #17	mrpl46 (ENSTRUG00000023585) #18	NTRK3 (ENSTRUG00000002667) #19	ENSTRUG00000033270	ENSTRUG00000021927 ##20	sv2ba (ENSTRUG00000015251) #21	mespba (ENSTRUG00000020616) #22	mespaa (ENSTRUG00000022932) #23	ANPEP (ENSTRUG00000023856) #24	ANPEP (ENSTRUG00000015317) #25	ap3s2 (ENSTRUG00000015431) #26	igf1rb (ENSTRUG00000015459) #27	LRRC28 (ENSTRUG00000015594) #28	SNAP25 (ENSTRUG00000015620) #29	cox5aa (ENSTRUG00000015647)	fam219b (ENSTRUG00000022531)	ENSTRUG00000024094	ENSTRUG00000024639	ENSTRUG00000024847	THSD4 (ENSTRUG00000028384)	ENSTRUG00000015724	fgf3 (ENSTRUG00000027654)
Tetraodon	MODERN SPECIES	26	TDP1 (ENSTNIG00000011903) #12	hmbox1a (ENSTNIG00000011904) #13	KIF13B (ENSTNIG00000011905) #14	ENSTNIG00000011906 #15	ENSTNIG00000011907 #16	PDPR (ENSTNIG00000011908) #16	mrps11 (ENSTNIG00000011909) #17	mrpl46 (ENSTNIG00000011910) #18	NTRK3 (ENSTNIG00000011911) #19	ENSTNIG00000003131	LHFPL4 (ENSTNIG00000011912)	ENSTNIG00000011913	ENSTNIG00000011914 ##20	ENSTNIG00000011915 ##20	sv2ba (ENSTNIG00000011916) #21	mespba (ENSTNIG00000011917) #22	mespaa (ENSTNIG00000000556) #23	ANPEP (ENSTNIG00000011918) #24	ANPEP (ENSTNIG00000011919) #25	ap3s2 (ENSTNIG00000011920) #26	igf1rb (ENSTNIG00000011921) #27	LRRC28 (ENSTNIG00000011922) #28	SNAP25 (ENSTNIG00000011923) #29	cox5aa (ENSTNIG00000011924)	fam219b (ENSTNIG00000011925)	ENSTNIG00000016048	ENSTNIG00000001218	larp6a (ENSTNIG00000011926)	tm2d3 (ENSTNIG00000011927)	ENSTNIG00000011928	ulk3 (ENSTNIG00000001896)