Otophysi	DUPLICATION
Otophysi	ANCESTRAL SPECIES																	ENSGT00530000063712.a.a.o.b.a.b #22
Cyprinoidei	ANCESTRAL SPECIES	14	ENSGT00940000160167	ENSGT00950000182902.b.a.d.b.a	ENSGT00940000164526.a	ENSGT00940000164669.k	ENSGT00950000182957.a.a.b	ENSGT00940000157220.a	ENSGT00940000158881	ENSGT00950000182844.b.b.b.a.a.i	ENSGT00940000159749	ENSGT00390000016068	ENSGT00390000015400	ENSGT00940000155645.i.b ##16	ENSGT00940000154146.b.a #20	ENSGT00950000182940.b.a.a.g.b ##21	ENSGT00530000063712.a.a.o.b.a.a ##24	ENSGT00530000063712.a.a.o.b.a.b #22	ENSGT00530000063712.a.a.o.a #24	ENSGT00940000154876.a.a.a.b ##28	ENSGT00940000154876.a.a.a.a ##28	ENSGT00940000156682.e.a	ENSGT00940000157771	ENSGT00940000156205.h.k.a	ENSGT00940000156291.e	ENSGT01010000222360.D.b	ENSGT00940000155391.a.b.b	ENSGT00390000001443	ENSGT00550000075025	ENSGT01040000240385.A.b.b.b.a.a.b.a.b.a.a.b	ENSGT00950000183093.B.b	ENSGT00940000155663.f.a	ENSGT00390000007681.b.a.a
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	145	ENSGT00940000156978.jb #9	ENSGT00940000155581.B.e #10	ENSGT00390000003374.g.b #11	ENSGT00940000158707.a.b.q.b #12	ENSGT00940000175810	ENSGT00390000003374.h ##11	ENSGT00940000158707.a.b.r ##12	ENSGT00520000055637.A.b.xb #13	ENSGT00940000154158.j #14	ENSGT00390000005224.q #15	ENSGT00940000155645.j.d #16	ENSGT00940000160936.c #17	ENSGT00950000182983.B.b.c #18	ENSGT00940000154146.b.a.w.a #20	ENSGT00950000182940.b.a.a.g.a.b #21	ENSGT00530000063712.a.a.o.b.a.b.b #22	ENSGT00530000063712.a.a.o.a.l.b #24	ENSGT01100000263475.f.a.e.b.a.b.a.a.a #26	ENSGT01100000263475.f.a.e.b.a.a.b #25	ENSGT00940000154876.a.b.b #27	ENSGT00940000154876.a.b.a.b #28	ENSGT00970000193421.C.b.i.a ##29	ENSGT00940000153377.B.d #30	ENSGT00940000156574.C.v #31	ENSGT00390000009899.a.d.p #32	ENSGT00990000209978.b #33	ENSGT00390000009663.i.a.b #34	ENSGT00990000204217.a #36	ENSGT00390000001802.ib.b #35	ENSGT00390000014700.b.a.a.b #37	ENSGT00940000159310.b
Cyprininae_a	ANCESTRAL SPECIES	73	ENSGT00940000156978.jb #9	ENSGT00940000155581.B.e #10	ENSGT00390000003374.g.b #11	ENSGT00940000158707.a.b.q.b #12	ENSGT00940000175810	ENSGT00390000003374.h ##11	ENSGT00940000158707.a.b.r ##12	ENSGT00520000055637.A.b.xb #13	ENSGT00940000154158.j #14	ENSGT00390000005224.q #15	ENSGT00940000155645.j.d #16	ENSGT00940000160936.c #17	ENSGT00950000182983.B.b.c #18	ENSGT00940000154146.b.a.w.a #20	ENSGT00950000182940.b.a.a.g.a.b #21	ENSGT00530000063712.a.a.o.b.a.b.b #22	ENSGT00530000063712.a.a.o.a.l.b #24	ENSGT01100000263475.f.a.e.b.a.b.a.a.a #26	ENSGT01100000263475.f.a.e.b.a.a.b #25	ENSGT00940000154876.a.b.b #27	ENSGT00940000154876.a.b.a.b #28	ENSGT00970000193421.C.b.i.b #29	ENSGT00940000153377.B.d #30	ENSGT00940000156574.C.v #31	ENSGT00390000009899.a.d.p #32	ENSGT00990000209978.b #33	ENSGT00390000009663.i.a.b #34	ENSGT00990000204217.a #36	ENSGT00390000001802.ib.b #35	ENSGT00390000014700.b.a.a.b #37	ENSGT00940000159310.b
Common carp reference	MODERN SPECIES	33	uba2 (ENSCCRG00000000370) #7	ENSCCRG00000076290 #8	ca5a (ENSCCRG00000058562) #9	slc7a5 (ENSCCRG00000079372) #10	klhdc4 (ENSCCRG00000038039) #11	jph3b (ENSCCRG00000067433) #12	ZCCHC14 (ENSCCRG00000004005) #13	map1lc3b (ENSCCRG00000004019) #14	det1 (ENSCCRG00000040862) #15	ntrk3a (ENSCCRG00000072351) #16	ENSCCRG00000069030 #17	KLHL25 (ENSCCRG00000037663) #18	ENSCCRG00000018929 #19	ENSCCRG00000037242 #20	ENSCCRG00000030842 #21	mespbb (ENSCCRG00000077122) #22	ENSCCRG00000060820 #23	mespab (ENSCCRG00000041730) #24	ENSCCRG00000041751 #25	ENSCCRG00000054038 #26	ENSCCRG00000041833 #27	anpepb.1 (ENSCCRG00000056750) #28	ENSCCRG00000076136 #29	ENSCCRG00000061403 #30	lrp5 (ENSCCRG00000041247) #31	ppp6r3 (ENSCCRG00000009623) #32	ENSCCRG00000009613 #33	gal (ENSCCRG00000009596) #34	psmd13 (ENSCCRG00000019004) #35	cox8b (ENSCCRG00000009591) #36	ric8a (ENSCCRG00000009508) #37
Golden-line barbel	DUPLICATION
Golden-line barbel	MODERN SPECIES	49	uba2 (ENSSGRG00000010774) #7	ca5a (ENSSGRG00000010758) #9	slc7a5 (ENSSGRG00000010757) #10	ENSSGRG00000010756	klhdc4 (ENSSGRG00000010755) ##11	ENSSGRG00000010753 ##12	ENSSGRG00000010752 #13	map1lc3b (ENSSGRG00000010720) #14	det1 (ENSSGRG00000010696) #15	ntrk3a (ENSSGRG00000010694) #16	ENSSGRG00000010691 #17	KLHL25 (ENSSGRG00000010690) #18	ENSSGRG00000010687 #20	ENSSGRG00000010685 #20	ENSSGRG00000010337 #21	mespbb (ENSSGRG00000010322) #22	mespab (ENSSGRG00000010319) #24	si:dkey-52p2.5 (ENSSGRG00000010317) ##26	ENSSGRG00000010314 ##26	ANPEP (ENSSGRG00000007959) #27	AP3S2 (ENSSGRG00000007847) #29	ENSSGRG00000007842 #30	lrp5 (ENSSGRG00000007824) #31	lrp5 (ENSSGRG00000007819) #31	ppp6r3 (ENSSGRG00000007782) #32	zgc:110339 (ENSSGRG00000007778)	cox8b (ENSSGRG00000007765) #36	ENSSGRG00000007761	ric8a (ENSSGRG00000007694) #37	ehf (ENSSGRG00000007691)	carmil3 (ENSSGRG00000007688)
Golden-line barbel	MODERN SPECIES	121	ENSSGRG00000053464	ncoa2 (ENSSGRG00000053417)	prdm14 (ENSSGRG00000053411)	ngdn (ENSSGRG00000053409)	pabpn1 (ENSSGRG00000053408)	ENSSGRG00000053407	JPH1 (ENSSGRG00000053406)	gdap1 (ENSSGRG00000053405)	pi15a (ENSSGRG00000053403)	CRISPLD1 (ENSSGRG00000053402)	dok6 (ENSSGRG00000053401)	cd226 (ENSSGRG00000053400)	RTTN (ENSSGRG00000053397)	ENSSGRG00000053394	cbln2b (ENSSGRG00000053388)	mespbb (ENSSGRG00000053387) #22	NETO1 (ENSSGRG00000053386)	timm21 (ENSSGRG00000053385)	ENSSGRG00000053383
Goldfish	DUPLICATION
Goldfish	MODERN SPECIES	45	guca1g (ENSCARG00000027811)	acte1 (ENSCARG00000027820)	shank2b (ENSCARG00000027895)	coq9 (ENSCARG00000028017)	ciapin1 (ENSCARG00000028072)	prmt7 (ENSCARG00000028095)	dbx1b (ENSCARG00000028158)	ENSCARG00000028163	map1lc3b (ENSCARG00000028179) #14	det1 (ENSCARG00000028213) #15	ENSCARG00000028236 #17	KLHL25 (ENSCARG00000028265) #18	ENSCARG00000028275 ##20	ENSCARG00000028286 ##20	ENSCARG00000028314 #21	mespbb (ENSCARG00000028542) #22	mespab (ENSCARG00000028545) #24	ENSCARG00000028550 #25	ENSCARG00000028556	ENSCARG00000028562	ENSCARG00000028572	ENSCARG00000028579 #25	ANPEP (ENSCARG00000028590) #27	anpepb.1 (ENSCARG00000028644) #28	ap3s2 (ENSCARG00000031020) ##29	ENSCARG00000031098 #30	lrp5 (ENSCARG00000031274) #31	ppp6r3 (ENSCARG00000038045) #32	ENSCARG00000039150 #33	gal (ENSCARG00000039166) #34	cox8b (ENSCARG00000039204) #36
Goldfish	MODERN SPECIES	184																mespbb (ENSCARG00000034029) #22	ENSCARG00000034033	mespab (ENSCARG00000034039) #24	ENSCARG00000034045 #25	ENSCARG00000034065 #26	ENSCARG00000034124 #25
Cyprininae	ANCESTRAL SPECIES	57	ENSGT00940000154222.c.r	ENSGT00990000206020.a.b ##8	ENSGT00550000074924.c ##7	ENSGT00940000156978.kb ##9	ENSGT00940000155581.B.f ##10	ENSGT00390000003374.g.a ##11	ENSGT00940000158707.a.b.q.a ##12	ENSGT00520000055637.A.b.yb ##13	ENSGT00940000154158.i ##14	ENSGT00390000005224.r ##15	ENSGT00940000155645.j.c ##16	ENSGT00940000160936.d ##17	ENSGT00950000182983.B.b.d ##18	ENSGT00940000154146.b.a.w.b ##20	ENSGT00950000182940.b.a.a.g.a.a ##21	ENSGT00530000063712.a.a.o.b.a.b.a ##24	ENSGT00530000063712.a.a.o.a.l.a ##24	ENSGT01100000263475.f.a.e.b.b #23	ENSGT01100000263475.f.a.e.b.a.a.a ##26	ENSGT00940000154876.a.b.a.a ##28	ENSGT00970000193421.C.b.i.b #29	ENSGT00940000153377.B.c ##30	ENSGT00940000156574.C.u ##31	ENSGT00390000009899.a.d.o ##32	ENSGT00990000209978.a ##33	ENSGT00390000009663.i.a.a ##34	ENSGT00940000165046.a	ENSGT00940000161379	ENSGT00990000204217.b ##36	ENSGT00390000001802.ib.a ##35	ENSGT00390000014700.b.a.a.a ##37
Goldfish	DUPLICATION
Goldfish	MODERN SPECIES	17	atp6v1e1a (ENSCARG00000013693)	ENSCARG00000013675	ENSCARG00000013651	ada2a (ENSCARG00000013642)	ribc2 (ENSCARG00000013632)	ENSCARG00000013124	DYRK4 (ENSCARG00000013061)	zgc:154077 (ENSCARG00000013000)	zgc:77158 (ENSCARG00000012991)	fgf6a (ENSCARG00000012982)	tigara (ENSCARG00000012969)	ccnd2a (ENSCARG00000012945)	KLHL25 (ENSCARG00000012939) ##18	ENSCARG00000012921 ##17	ENSCARG00000012643 ##21	mespbb (ENSCARG00000012632) ##24	mespab (ENSCARG00000012629) ##24	mhc1lga (ENSCARG00000012625) #23	ENSCARG00000012617 ##26	ENSCARG00000012615	anpepb.1 (ENSCARG00000009860) ##28	AP3S2 (ENSCARG00000009763) #29	ENSCARG00000009758 ##30	lrp5 (ENSCARG00000006697) ##31	ppp6r3 (ENSCARG00000006093) ##32	ENSCARG00000006042 ##33	gal (ENSCARG00000006030) ##34	zgc:110339 (ENSCARG00000006022)	ENSCARG00000006018	cox8b (ENSCARG00000006008) ##36	psmd13 (ENSCARG00000005621) ##35
Goldfish	MODERN SPECIES	1219															ENSCARG00000032788 ##21	mespbb (ENSCARG00000033085) ##24	mespab (ENSCARG00000033093) ##24	ENSCARG00000033097 ##26	ENSCARG00000033123 ##26	ENSCARG00000030518	anpepb.1 (ENSCARG00000030735) ##28
Cyprininae_a	ANCESTRAL SPECIES	106	ENSGT00940000154222.c.r	ENSGT00990000206020.a.b ##8	ENSGT00550000074924.c ##7	ENSGT00940000156978.kb ##9	ENSGT00940000155581.B.f ##10	ENSGT00390000003374.g.a ##11	ENSGT00940000158707.a.b.q.a ##12	ENSGT00520000055637.A.b.yb ##13	ENSGT00940000154158.i ##14	ENSGT00390000005224.r ##15	ENSGT00940000155645.j.c ##16	ENSGT00940000160936.d ##17	ENSGT00950000182983.B.b.d ##18	ENSGT00940000154146.b.a.w.b ##20	ENSGT00950000182940.b.a.a.g.a.a ##21	ENSGT00530000063712.a.a.o.b.a.b.a ##24	ENSGT00530000063712.a.a.o.a.l.a ##24	ENSGT01100000263475.f.a.e.b.b.b ##26	ENSGT00940000154876.a.b.a.a ##28	ENSGT00970000193421.C.b.i.a ##29	ENSGT00940000153377.B.c ##30	ENSGT00940000156574.C.u ##31	ENSGT00390000009899.a.d.o ##32	ENSGT00990000209978.a ##33	ENSGT00390000009663.i.a.a ##34	ENSGT00940000165046.a	ENSGT00940000161379	ENSGT00990000204217.b ##36	ENSGT00390000001802.ib.a ##35	ENSGT00390000014700.b.a.a.a ##37	ENSGT00940000159310.a
Common carp reference	MODERN SPECIES	37	septin15 (ENSCCRG00000012341)	uba2 (ENSCCRG00000001245) ##7	ca5a (ENSCCRG00000065075) ##9	ENSCCRG00000081210	slc7a5 (ENSCCRG00000001021) ##10	klhdc4 (ENSCCRG00000066095) ##11	jph3b (ENSCCRG00000038054) ##12	ENSCCRG00000058833 ##13	map1lc3b (ENSCCRG00000028252) ##14	det1 (ENSCCRG00000028334) ##15	ntrk3a (ENSCCRG00000009333) ##16	KLHL25 (ENSCCRG00000071936) ##18	AGBL1 (ENSCCRG00000030098) ##17	ENSCCRG00000060604 ##20	ENSCCRG00000040010 ##21	mespbb (ENSCCRG00000030820) ##24	mespab (ENSCCRG00000067084) ##24	ENSCCRG00000030812 ##26	ENSCCRG00000040316 ##26	mespab (ENSCCRG00000040312) ##24	ENSCCRG00000072483 ##26	ENSCCRG00000040302 ##26	anpepb.1 (ENSCCRG00000040290) ##28	anpepb.1 (ENSCCRG00000040240) ##28	ap3s2 (ENSCCRG00000040121) ##29	lrp5 (ENSCCRG00000009797) ##31	ppp6r3 (ENSCCRG00000010181) ##32	ENSCCRG00000012535 ##33	gal (ENSCCRG00000012523) ##34	zgc:110339 (ENSCCRG00000012538)	ENSCCRG00000012542
Golden-line barbel	MODERN SPECIES	37	ENSSGRG00000038226 ##8	ENSSGRG00000038224 ##8	uba2 (ENSSGRG00000038019) ##7	ca5a (ENSSGRG00000037992) ##9	slc7a5 (ENSSGRG00000037443) ##10	ENSSGRG00000037423	jph3b (ENSSGRG00000037416) ##12	map1lc3b (ENSSGRG00000037348) ##14	det1 (ENSSGRG00000037339) ##15	ntrk3a (ENSSGRG00000037329) ##16	ENSSGRG00000037328 ##17	KLHL25 (ENSSGRG00000037327) ##18	ENSSGRG00000037324 ##20	ENSSGRG00000037320 ##20	ENSSGRG00000036762 ##21	mespbb (ENSSGRG00000036756) ##24	mespab (ENSSGRG00000036755) ##24	mhc1lga (ENSSGRG00000036754) #23	anpepb.1 (ENSSGRG00000036753) ##28	ap3s2 (ENSSGRG00000036752) ##29	ENSSGRG00000036751 ##30	lrp5 (ENSSGRG00000034220) ##31	ppp6r3 (ENSSGRG00000034077) ##32	ENSSGRG00000034069 ##33	gal (ENSSGRG00000034053) ##34	zgc:110339 (ENSSGRG00000034048)	ENSSGRG00000034047	cox8b (ENSSGRG00000034046) ##36	psmd13 (ENSSGRG00000033391) ##35	ric8a (ENSSGRG00000033287) ##37	ehf (ENSSGRG00000033284)
Zebrafish	MODERN SPECIES	17	ccl33.2 (ENSDARG00000102519) ##8	uba2 (ENSDARG00000101332) #7	ca5a (ENSDARG00000101778) #9	slc7a5 (ENSDARG00000099265) #10	klhdc4 (ENSDARG00000100206) #11	jph3b (ENSDARG00000102204) #12	ZCCHC14 (ENSDARG00000101242) #13	ENSDARG00000103098	map1lc3b (ENSDARG00000101127) #14	det1 (ENSDARG00000098247) #15	ntrk3a (ENSDARG00000077228) #16	ENSDARG00000104384 #17	KLHL25 (ENSDARG00000102418) #18	ENSDARG00000079994 #20	SV2B (ENSDARG00000060711) #21	mespbb (ENSDARG00000097947) #22	mespab (ENSDARG00000068761) #24	mhc1lia (ENSDARG00000097766)	mhc1lga (ENSDARG00000051713) #23	si:dkey-52p2.5 (ENSDARG00000096940) #25	mhc1lla (ENSDARG00000096977) #25	mhc1lda (ENSDARG00000023203) #23	mhc1lfa (ENSDARG00000051712) #23	ENSDARG00000051711 #23	ENSDARG00000097352	mhc1lja (ENSDARG00000096830) #25	ENSDARG00000115781	ENSDARG00000051710 #23	ENSDARG00000097275 #23	ANPEP (ENSDARG00000097285) #27	anpepb.1 (ENSDARG00000103878) #28
Otophysi	ANCESTRAL SPECIES	72	ENSGT00390000008092.b.a.b	ENSGT00940000161629.a	ENSGT00940000160167	ENSGT00950000182902.b.a.d.b.a	ENSGT00940000164526.a	ENSGT00940000164669	ENSGT00940000158881	ENSGT00950000182844.b.b.b.a.a.i	ENSGT00940000177011	ENSGT00940000159749	ENSGT00390000016068	ENSGT00390000015400	ENSGT00940000155645.i.b ##16	ENSGT00940000154146.b.a #20	ENSGT00950000182940.b.a.a.g.b ##21	ENSGT00530000063712.a.a.o.b.a.a ##24	ENSGT00530000063712.a.a.o.a #24	ENSGT00940000164605.e	ENSGT00940000154876.a.a.a.b ##28	ENSGT00940000154876.a.a.a.a ##28	ENSGT00940000156682.e.a	ENSGT00940000157771	ENSGT00940000156205.g	ENSGT00940000156205.h	ENSGT00940000156291.f	ENSGT00940000156291.e	ENSGT01010000222360.D.b	ENSGT00940000155391.a.b.b	ENSGT00390000001443	ENSGT00550000075025	ENSGT00950000183093.B.b
Characiphysae	ANCESTRAL SPECIES	8	ENSGT00390000008092.b.a.b	ENSGT00940000160167	ENSGT00950000182902.b.a.d.b.a	ENSGT00940000164526.a	ENSGT00940000164669	ENSGT00940000157220.a	ENSGT00940000158881	ENSGT00950000182844.b.b.b.a.a.i	ENSGT00940000177011	ENSGT00940000159749	ENSGT00390000016068	ENSGT00390000015400	ENSGT00940000155645.i.b ##16	ENSGT00940000154146.b.a #20	ENSGT00950000182940.b.a.a.g.b ##21	ENSGT00530000063712.a.a.o.b.a.a ##24	ENSGT00530000063712.a.a.o.a #24	ENSGT00940000154876.a.a.a.b ##28	ENSGT00940000154876.a.a.a.a ##28	ENSGT00940000156682.e.a	ENSGT00940000157771	ENSGT00940000156205.g	ENSGT00940000156291.e	ENSGT00390000007753.a	ENSGT00940000153986.b.a.u.b	ENSGT00940000156318.b.b	ENSGT00530000063405.a	ENSGT00390000011249	ENSGT00390000011698.c.a.b	ENSGT00940000160591.a.a	ENSGT00940000166218
Characiphysae_b	ANCESTRAL SPECIES	4	ENSGT00940000160167	ENSGT00950000182902.b.a.d.b.a	ENSGT00940000164526.a	ENSGT00940000164669	ENSGT00950000182957.a.a.b	ENSGT00940000157220.a	ENSGT00940000158881	ENSGT00950000182844.b.b.b.a.a.i	ENSGT00940000159749	ENSGT00940000177011	ENSGT00390000016068	ENSGT00390000015400	ENSGT00940000155645.i.b ##16	ENSGT00940000154146.b.a #20	ENSGT00950000182940.b.a.a.g.b ##21	ENSGT00530000063712.a.a.o.b.a.a ##24	ENSGT00530000063712.a.a.o.a #24	ENSGT00940000154876.a.a.a.b ##28	ENSGT00940000154876.a.a.a.a ##28	ENSGT00940000156682.e.a	ENSGT00940000157771	ENSGT00940000156205.g	ENSGT00940000156291.e	ENSGT00390000007753.a	ENSGT00940000153986.b.a.u.b	ENSGT00940000156318.b.b	ENSGT00530000063405.a	ENSGT00390000011249	ENSGT00390000011698.c.a.b	ENSGT00940000160591.a.a	ENSGT00940000166218
Characoidei	ANCESTRAL SPECIES	18	ENSGT00940000164669	ENSGT00950000182957.a.a.b	ENSGT00940000157220.a	ENSGT00940000158881	ENSGT00950000182844.b.b.b.a.a.i.c	ENSGT00950000182844.b.b.b.a.a.i.d	ENSGT00940000159749	ENSGT00940000177011	ENSGT00390000016068	ENSGT00390000015400	ENSGT00940000155645.i.b ##16	ENSGT00940000154146.b.a.t #20	ENSGT00990000209097	ENSGT00940000154146.b.a.s #20	ENSGT00950000182940.b.a.a.g.b ##21	ENSGT00530000063712.a.a.o.b.a.a ##24	ENSGT00530000063712.a.a.o.a #24	ENSGT00940000154876.a.a.a.b ##28	ENSGT00940000154876.a.a.a.a ##28	ENSGT00940000156682.e.a	ENSGT00940000157771	ENSGT00940000156205.h	ENSGT00940000156291.f	ENSGT00940000156291.e	ENSGT00390000007753.a	ENSGT00940000153986.b.a.u.b	ENSGT00940000156318.b.b	ENSGT00530000063405.a	ENSGT00390000011249	ENSGT00390000011698.c.a.b	ENSGT00940000160591.a.a
Mexicana tetra	MODERN SPECIES	20	impact (ENSAMXG00000021560)	ing5a (ENSAMXG00000021559)	cep19 (ENSAMXG00000021558)	pigx (ENSAMXG00000021557)	pak2b (ENSAMXG00000021556)	si:dkey-10o6.2 (ENSAMXG00000021555)	rpp21 (ENSAMXG00000030709)	kif7 (ENSAMXG00000021552)	ENSAMXG00000037959	mrps11 (ENSAMXG00000021547)	mrpl46 (ENSAMXG00000030876)	NTRK3 (ENSAMXG00000039792) ##16	si:dkey-172h23.2 (ENSAMXG00000021520) #20	ENSAMXG00000038003 #20	sv2ba (ENSAMXG00000021489) ##21	mespba (ENSAMXG00000040981) ##24	mespaa (ENSAMXG00000041487) #24	ANPEP (ENSAMXG00000021468) ##28	ENSAMXG00000021464	ANPEP (ENSAMXG00000031216) ##28	ANPEP (ENSAMXG00000021446) ##28	igf1rb (ENSAMXG00000021415)	LRRC28 (ENSAMXG00000040593)	ENSAMXG00000029762	ENSAMXG00000021393	ENSAMXG00000021387	ero1b (ENSAMXG00000021371)	GPR137B (ENSAMXG00000021361)	NID1 (ENSAMXG00000021348)	tbce (ENSAMXG00000021338)	ENSAMXG00000040370
Red-bellied piranha	MODERN SPECIES	62	furina (ENSPNAG00000013317)	fes (ENSPNAG00000002715)	rhcga (ENSPNAG00000013369)	ENSPNAG00000005134	ENSPNAG00000013390	rhcga (ENSPNAG00000013417)	ENSPNAG00000002741	kif7 (ENSPNAG00000002750)	mrps11 (ENSPNAG00000002759)	mrpl46 (ENSPNAG00000013468)	NTRK3 (ENSPNAG00000007107) ##16	ENSPNAG00000013536 ##20	ENSPNAG00000013542	ENSPNAG00000002819 #20	sv2ba (ENSPNAG00000013626) ##21	mespba (ENSPNAG00000002870) ##24	mespaa (ENSPNAG00000013677) #24	ANPEP (ENSPNAG00000014278) ##28	ANPEP (ENSPNAG00000014622) ##28	ANPEP (ENSPNAG00000014668) ##28	igf1rb (ENSPNAG00000014746)	LRRC28 (ENSPNAG00000014781)	ENSPNAG00000014801	MCTP2 (ENSPNAG00000014920)	ENSPNAG00000014932
Channel catfish	MODERN SPECIES	1	abhd2a (ENSIPUG00000022936)	rlbp1 (ENSIPUG00000022926)	SLC39A2 (ENSIPUG00000022916)	ENSIPUG00000022897	furina (ENSIPUG00000022809)	V-FPS (ENSIPUG00000022771)	rhcga (ENSIPUG00000022758)	ENSIPUG00000022596	kif7 (ENSIPUG00000022517)	MRPS11 (ENSIPUG00000022494)	mrpl46 (ENSIPUG00000022487)	ntrk3 (ENSIPUG00000022403) ##16	ENSIPUG00000022328 #20	ENSIPUG00000022313 #20	Sv2b (ENSIPUG00000022299) ##21	mespba (ENSIPUG00000022294) ##24	mespaa (ENSIPUG00000022281) #24	ANPEP (ENSIPUG00000022254) ##28	ENSIPUG00000022242	Igf1r (ENSIPUG00000022197)	lrrc28 (ENSIPUG00000022158)	ENSIPUG00000022132	ENSIPUG00000022109	ENSIPUG00000022099	ero1b (ENSIPUG00000022054)	gpr137b (ENSIPUG00000022038)	nid1 (ENSIPUG00000022017)	tbce (ENSIPUG00000021983)	rbm34 (ENSIPUG00000021952)	tomm20b (ENSIPUG00000021935)	ENSIPUG00000021929
Cyprinoidei	ANCESTRAL SPECIES	14	ENSGT00940000161629.a	ENSGT00940000160167	ENSGT00950000182902.b.a.d.b.a	ENSGT00940000164526.a	ENSGT00940000164669.k	ENSGT00950000182957.a.a.b	ENSGT00940000157220.a	ENSGT00940000158881	ENSGT00950000182844.b.b.b.a.a.i	ENSGT00940000159749	ENSGT00390000016068	ENSGT00390000015400	ENSGT00940000155645.i.b ##16	ENSGT00940000154146.b.a #20	ENSGT00950000182940.b.a.a.g.b ##21	ENSGT00530000063712.a.a.o.b.a.a ##24	ENSGT00530000063712.a.a.o.b.a.b #22	ENSGT00530000063712.a.a.o.a #24	ENSGT00940000154876.a.a.a.b ##28	ENSGT00940000154876.a.a.a.a ##28	ENSGT00940000156682.e.a	ENSGT00940000157771	ENSGT00940000156205.h.k.a	ENSGT00940000156291.e	ENSGT01010000222360.D.b	ENSGT00940000155391.a.b.b	ENSGT00390000001443	ENSGT00550000075025	ENSGT01040000240385.A.b.b.b.a.a.b.a.b.a.a.b	ENSGT00950000183093.B.b	ENSGT00940000155663.f.a
Cyprininae	DUPLICATION
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	161	ENSGT00940000161629.a	ENSGT00940000160167.a	ENSGT00950000182902.b.a.d.b.a.d	ENSGT00940000164526.a.d	ENSGT00940000164669.k.b	ENSGT00950000182957.a.a.b.fc.a	ENSGT00940000157220.a.d	ENSGT00940000158881.n	ENSGT00950000182844.b.b.b.a.a.i.e	ENSGT00940000159749.d	ENSGT00390000016068.a	ENSGT00390000015400.i	ENSGT00940000155645.i.b.b ##16	ENSGT00940000154146.b.a.x.a ##20	ENSGT00950000182940.b.a.a.g.b.a ##21	ENSGT00530000063712.a.a.o.b.a.a.a.a ##24	ENSGT00530000063712.a.a.o.a.k.b ##24	ENSGT00940000154876.a.a.a.b.e ##28	ENSGT00940000154876.a.a.a.a.a ##28	ENSGT00940000156682.e.a.b	ENSGT00940000157771.s	ENSGT00940000156205.h.k.a.a	ENSGT00940000156291.e.b	ENSGT01010000222360.D.b.e	ENSGT00940000155391.a.b.b.b	ENSGT00390000001443.b	ENSGT00550000075025.c	ENSGT01040000240385.A.b.b.b.a.a.b.a.b.a.b.a.a.a.b	ENSGT00390000007681.b.a.a.m.a.b.b
Goldfish	MODERN SPECIES	25	ENSCARG00000013379	KBTBD13 (ENSCARG00000013381)	rasl12 (ENSCARG00000013386)	abhd2a (ENSCARG00000013398)	slc39a1 (ENSCARG00000013451)	ENSCARG00000013456	furina (ENSCARG00000013542)	fes (ENSCARG00000014213)	rhcga (ENSCARG00000014595)	kif7 (ENSCARG00000014768)	mrps11 (ENSCARG00000014953)	mrpl46 (ENSCARG00000014990)	NTRK3 (ENSCARG00000015022) ##16	ENSCARG00000015128 ##20	sv2ba (ENSCARG00000015152) ##21	mespba (ENSCARG00000015180) ##24	mespaa (ENSCARG00000015187) ##24	ENSCARG00000015208 ##28	igf1rb (ENSCARG00000015482)	LRRC28 (ENSCARG00000005854)	ENSCARG00000005874	ENSCARG00000005902	RCN1 (ENSCARG00000006002)	pax6b (ENSCARG00000006174)	elp4 (ENSCARG00000008441)	immp1l (ENSCARG00000008452)	ENSCARG00000008468	CEMIP (ENSCARG00000008591)	mesd (ENSCARG00000011791)	TLNRD1 (ENSCARG00000011803)	asb7 (ENSCARG00000011809)
Cyprininae_a	ANCESTRAL SPECIES	248	ENSGT00940000160167.a	ENSGT00950000182902.b.a.d.b.a.d	ENSGT00940000164526.a.d	ENSGT00940000164669.k.b	ENSGT00950000182957.a.a.b.fc.a	ENSGT00940000157220.a.d	ENSGT00940000158881.n	ENSGT00950000182844.b.b.b.a.a.i.e	ENSGT00940000159749.d	ENSGT00390000016068.a	ENSGT00390000015400.i	ENSGT00960000189817	ENSGT00940000155645.i.b.b ##16	ENSGT00940000154146.b.a.x.a ##20	ENSGT00950000182940.b.a.a.g.b.a ##21	ENSGT00530000063712.a.a.o.b.a.a.a.a ##24	ENSGT00530000063712.a.a.o.a.k.b ##24	ENSGT00940000154876.a.a.a.b.e ##28	ENSGT00940000154876.a.a.a.a.a ##28	ENSGT00940000156682.e.a.b	ENSGT00940000157771.s	ENSGT00940000156205.h.k.a.a	ENSGT00940000156291.e.b	ENSGT01010000222360.D.b.e	ENSGT00940000155391.a.b.b.b	ENSGT00390000001443.b	ENSGT00550000075025.c	ENSGT01040000240385.A.b.b.b.a.a.b.a.b.a.a.b
Common carp reference	MODERN SPECIES	6	rasl12 (ENSCCRG00000057326)	abhd2a (ENSCCRG00000051285)	rlbp1a (ENSCCRG00000051310)	slc39a1 (ENSCCRG00000080062)	ENSCCRG00000040453	ENSCCRG00000067333	furina (ENSCCRG00000039242)	fes (ENSCCRG00000010640)	rhcga (ENSCCRG00000017377)	kif7 (ENSCCRG00000017349)	mrps11 (ENSCCRG00000017355)	mrpl46 (ENSCCRG00000067215)	NTRK3 (ENSCCRG00000005300) ##16	si:dkey-172h23.2 (ENSCCRG00000021605) ##20	sv2ba (ENSCCRG00000021601) ##21	mespba (ENSCCRG00000021596) ##24	mespaa (ENSCCRG00000021594) ##24	ENSCCRG00000061982 ##28	ENSCCRG00000045382 ##28	igf1rb (ENSCCRG00000002287)	ENSCCRG00000079595	ENSCCRG00000021133	ENSCCRG00000021147	RCN1 (ENSCCRG00000077682)	pax6b (ENSCCRG00000045912)	elp4 (ENSCCRG00000068491)	immp1l (ENSCCRG00000024529)	ENSCCRG00000065816	mpped2a (ENSCCRG00000007213)	zdhhc13 (ENSCCRG00000079798)	csrp3 (ENSCCRG00000065216)
Cyprininae	ANCESTRAL SPECIES	228	ENSGT00390000017625.k.d	ENSGT00940000160167.b	ENSGT00950000182902.b.a.d.b.a.c	ENSGT00940000164526.a.c	ENSGT00940000164669.k.a	ENSGT00950000182957.a.a.b.fc.b	ENSGT00940000157220.a.c	ENSGT00940000158881.m	ENSGT00950000182844.b.b.b.a.a.i.f	ENSGT00940000159749.c	ENSGT00390000016068.b	ENSGT00390000015400.j	ENSGT00940000155645.i.b.a ##16	ENSGT00940000154146.b.a.x.b ##20	ENSGT00950000182940.b.a.a.g.b.b ##21	ENSGT00530000063712.a.a.o.b.a.a.a.b ##24	ENSGT00530000063712.a.a.o.a.k.a ##24	ENSGT00940000154876.a.a.a.b.f ##28	ENSGT00940000154876.a.a.a.a.b ##28	ENSGT00940000156682.e.a.a	ENSGT00940000157771.t	ENSGT00940000156205.h.k.a.b	ENSGT00940000156205.h.k.b.a	ENSGT00940000156291.e.a	ENSGT01010000222360.D.b.f	ENSGT00940000155391.a.b.b.a	ENSGT00390000001443.a	ENSGT00550000075025.d	ENSGT01040000240385.A.b.b.b.a.a.b.a.b.a.b.a.a.a.a	ENSGT00390000007681.b.a.a.m.b	ENSGT00530000063074.b.a.j
Cyprininae_a	ANCESTRAL SPECIES	185	ENSGT00390000017625.k.d	ENSGT00940000160167.b	ENSGT00950000182902.b.a.d.b.a.c	ENSGT00940000164526.a.c	ENSGT00940000164669.k.a	ENSGT00950000182957.a.a.b.fc.b	ENSGT00940000157220.a.c	ENSGT00940000158881.m	ENSGT00950000182844.b.b.b.a.a.i.f	ENSGT00940000159749.c	ENSGT00390000016068.b.a	ENSGT00390000015400.j	ENSGT00940000155645.i.b.a ##16	ENSGT00940000154146.b.a.x.b ##20	ENSGT00950000182940.b.a.a.g.b.b ##21	ENSGT00530000063712.a.a.o.b.a.a.a.b ##24	ENSGT00530000063712.a.a.o.a.k.a ##24	ENSGT00940000154876.a.a.a.b.f ##28	ENSGT00940000154876.a.a.a.a.b ##28	ENSGT00940000156682.e.a.a	ENSGT00940000157771.t	ENSGT00940000156205.h.k.a.b	ENSGT00940000156205.h.k.b.a	ENSGT00940000156291.e.a	ENSGT01010000222360.D.b.f	ENSGT00940000155391.a.b.b.a	ENSGT00390000001443.a	ENSGT00550000075025.d	ENSGT01040000240385.A.b.b.b.a.a.b.a.b.a.b.a.a.b	ENSGT01040000240385.A.b.b.b.a.a.b.a.b.a.b.a.a.a.a	ENSGT00390000007681.b.a.a.m.b
Common carp reference	MODERN SPECIES		rasl12 (ENSCCRG00000051270)	abhd2a (ENSCCRG00000069839)	rlbp1a (ENSCCRG00000067263)	slc39a1 (ENSCCRG00000033956)	ENSCCRG00000033942	furina (ENSCCRG00000000334)	fes (ENSCCRG00000001238)	rhcga (ENSCCRG00000001212)	kif7 (ENSCCRG00000021446)	mrps11 (ENSCCRG00000073284)	mrpl46 (ENSCCRG00000017353)	NTRK3 (ENSCCRG00000074988) ##16	ENSCCRG00000080887	si:dkey-172h23.2 (ENSCCRG00000062760) ##20	sv2ba (ENSCCRG00000010713) ##21	mespba (ENSCCRG00000059314) ##24	ENSCCRG00000046283 ##28	ENSCCRG00000079481 ##28	igf1rb (ENSCCRG00000014052)	ENSCCRG00000066581	ENSCCRG00000027348	ENSCCRG00000060414	ENSCCRG00000026815	ENSCCRG00000044124	elp4 (ENSCCRG00000000438)	pax6b (ENSCCRG00000028477)	immp1l (ENSCCRG00000000536)	ENSCCRG00000069413	ENSCCRG00000031150	mpped2a (ENSCCRG00000079412)	zdhhc13 (ENSCCRG00000019248)
Goldfish	MODERN SPECIES	47	ntn4 (ENSCARG00000067663)	dock11 (ENSCARG00000067570)	slc39a1 (ENSCARG00000067544)	ENSCARG00000067517	ENSCARG00000067506	furina (ENSCARG00000066982)	fes (ENSCARG00000066532)	rhcga (ENSCARG00000066260)	kif7 (ENSCARG00000066113)	mrps11 (ENSCARG00000066088)	mrpl46 (ENSCARG00000066075)	NTRK3 (ENSCARG00000065763) ##16	ENSCARG00000065715 ##20	ENSCARG00000065677 ##20	sv2ba (ENSCARG00000065653) ##21	mespba (ENSCARG00000065645) ##24	mespaa (ENSCARG00000065640) ##24	ENSCARG00000064612 ##28	ANPEP (ENSCARG00000064330) ##28	igf1rb (ENSCARG00000057409)	LRRC28 (ENSCARG00000057035)	ENSCARG00000057020	ENSCARG00000057010	ENSCARG00000056603	RCN1 (ENSCARG00000056482)	pax6b (ENSCARG00000054974)	elp4 (ENSCARG00000054681)	immp1l (ENSCARG00000054630)	ENSCARG00000054586	ENSCARG00000054449	mpped2a (ENSCARG00000054421)
Cyprininae	ANCESTRAL SPECIES																	ENSGT00530000063712.a.a.o.b.a.a.b ##24
Cyprininae_a	ANCESTRAL SPECIES																	ENSGT00530000063712.a.a.o.b.a.a.b ##24
Golden-line barbel	MODERN SPECIES	189	UBAP1L (ENSSGRG00000036420)	KBTBD13 (ENSSGRG00000036421)	rasl12 (ENSSGRG00000036422)	rlbp1a (ENSSGRG00000036426)	ENSSGRG00000036429	furina (ENSSGRG00000036455)	fes (ENSSGRG00000037255)	rhcga (ENSSGRG00000037351)	ENSSGRG00000037361	mrps11 (ENSSGRG00000037362)	mrps11 (ENSSGRG00000037364)	ENSSGRG00000037367	NTRK3 (ENSSGRG00000037372) ##16	ENSSGRG00000037380 ##20	sv2ba (ENSSGRG00000037385) ##21	mespba (ENSSGRG00000037917) ##24	mespaa (ENSSGRG00000037918) ##24	ENSSGRG00000037919	ANPEP (ENSSGRG00000037924) ##28	ANPEP (ENSSGRG00000038984) ##28	igf1rb (ENSSGRG00000039057)	ENSSGRG00000042028	ENSSGRG00000042030	ENSSGRG00000042036	RCN1 (ENSSGRG00000042120)	pax6b (ENSSGRG00000042121)	elp4 (ENSSGRG00000042292)	immp1l (ENSSGRG00000042293)	ENSSGRG00000042294	ENSSGRG00000042295	mpped2a (ENSSGRG00000042297)
Zebrafish	MODERN SPECIES	22	rasl12 (ENSDARG00000002701)	abhd2a (ENSDARG00000025797)	rlbp1a (ENSDARG00000012504)	slc39a1 (ENSDARG00000058257)	ENSDARG00000105391	furina (ENSDARG00000062909)	fes (ENSDARG00000011449)	rhcga (ENSDARG00000003203)	kif7 (ENSDARG00000033099)	mrps11 (ENSDARG00000075129)	mrpl46 (ENSDARG00000016307)	NTRK3 (ENSDARG00000086214) ##16	si:dkey-172h23.2 (ENSDARG00000023868) #20	sv2ba (ENSDARG00000057427) ##21	mespaa (ENSDARG00000017078) #24	mespba (ENSDARG00000030347) ##24	ENSDARG00000089706	ANPEP (ENSDARG00000036809) ##28	igf1rb (ENSDARG00000034434)	LRRC28 (ENSDARG00000057477)	ENSDARG00000057527	ENSDARG00000073970	RCN1 (ENSDARG00000070006)	pax6b (ENSDARG00000045936)	elp4 (ENSDARG00000008852)	immp1l (ENSDARG00000045935)	ENSDARG00000105564	ENSDARG00000060962	btr05 (ENSDARG00000074813)	btr06 (ENSDARG00000054184)	ENSDARG00000105558