Osteoglossocephalai	ANCESTRAL SPECIES		ENSGT00940000156978	ENSGT00940000155581.B	ENSGT00390000003374	ENSGT00940000158707.a.b	ENSGT00520000055637.A.b	ENSGT00940000154158	ENSGT00390000005224	ENSGT00390000016068 #16	ENSGT00390000015400 #17	ENSGT00940000155645 #18	ENSGT00940000160936	ENSGT00950000182983.B.b	ENSGT00940000154146.b.a #19	ENSGT00950000182940.b.a.a.g.a ##20	ENSGT00530000063712.a.a.o.b #21	ENSGT00530000063712.a.a.o.a #22	ENSGT00940000154876.a.a.a.a #24	ENSGT00970000193421.C.b #25	ENSGT00940000154146.b.b.b ##19	ENSGT00950000182940.b.a.a.g.b #20	ENSGT01080000257410.A.f.l	ENSGT00390000013269	ENSGT00940000164605	ENSGT00530000064251	ENSGT00510000048902.b	ENSGT00940000156682 #26	ENSGT00390000015368.a.b	ENSGT00940000159268	ENSGT00530000063847.a	ENSGT00940000157771 #27	ENSGT00940000156205.h
Clupeocephala	ANCESTRAL SPECIES	2	ENSGT00550000074924	ENSGT00940000156978	ENSGT00940000155581.B	ENSGT00390000003374	ENSGT00940000158707.a.b	ENSGT00520000055637.A.b	ENSGT00940000154158	ENSGT00390000005224	ENSGT00940000155645.j ##18	ENSGT00940000155645.i.a ##18	ENSGT00940000160936	ENSGT00950000182983.B.b	ENSGT00940000154146.b.b.b ##19	ENSGT00950000182940.b.a.a.g.a ##20	ENSGT00530000063712.a.a.o.b #21	ENSGT00530000063712.a.a.o.a #22	ENSGT00940000154876.a.a.a.b #23	ENSGT00940000154876.a.a.a.a #24	ENSGT00970000193421.C.b #25	ENSGT00940000170837	ENSGT00940000156574.C	ENSGT00390000009899.a.d	ENSGT00940000167440	ENSGT00390000009663	ENSGT00940000165046.a	ENSGT00940000161379	ENSGT00990000204217
Euteleosteomorpha	ANCESTRAL SPECIES	3	ENSGT00940000153725.a.b.a	ENSGT00940000156519.o	ENSGT00940000158316	ENSGT00950000182971.A	ENSGT00390000015893	ENSGT00390000015857	ENSGT00940000157600	ENSGT00390000011262.e.b	ENSGT00940000159082 #15	ENSGT00390000016068 #16	ENSGT00390000015400 #17	ENSGT00940000155645.i.b #18	ENSGT00940000154146.b.a #19	ENSGT00950000182940.b.a.a.g.b #20	ENSGT00530000063712.a.a.o.b #21	ENSGT00530000063712.a.a.o.a #22	ENSGT00940000154876.a.a.a.b #23	ENSGT00940000154876.a.a.a.a #24	ENSGT00970000193421.C.b #25	ENSGT00940000156682.e.a #26	ENSGT00940000157771 #27	ENSGT00940000156205.g	ENSGT00940000156291.e	ENSGT00940000157540.B	ENSGT01080000257410.A.f.l	ENSGT01050000244841.A.a.b.qb.a #8	ENSGT00390000009995	ENSGT00940000154870.D.a.b	ENSGT00940000161170.c	ENSGT00390000012547.a.f.a	ENSGT00940000159833
Acanthomorphata	ANCESTRAL SPECIES	216									ENSGT00940000159082 #15	ENSGT00390000016068 #16	ENSGT00390000015400 #17	ENSGT00940000155645.i.b #18	ENSGT00940000154146.b.a #19	ENSGT00950000182940.b.a.a.g.b #20	ENSGT00530000063712.a.a.o.b #21	ENSGT00530000063712.a.a.o.a #22	ENSGT00940000154876.a.a.a.b #23	ENSGT00940000154876.a.a.a.a #24	ENSGT00970000193421.C.b #25	ENSGT00940000156682.e.a #26	ENSGT00940000157771 #27	ENSGT00940000156205.g	ENSGT00940000156291.e	ENSGT00940000157540.B	ENSGT01080000257410.A.f.l	ENSGT01050000244841.A.a.b.qb.a.b #8
Euacanthomorphacea	ANCESTRAL SPECIES	29									ENSGT00940000159082 #15	ENSGT00390000016068 #16	ENSGT00390000015400 #17	ENSGT00940000155645.i.b #18	ENSGT00940000154146.b.a #19	ENSGT00950000182940.b.a.a.g.b #20	ENSGT00530000063712.a.a.o.b #21	ENSGT00530000063712.a.a.o.a #22	ENSGT00940000154876.a.a.a.b #23	ENSGT00940000154876.a.a.a.a #24	ENSGT00970000193421.C.b #25	ENSGT00940000156682.e.a #26	ENSGT00940000157771 #27	ENSGT00950000182843.a.a.a.b.a.a.a.b #28	ENSGT00390000001424.wb.b	ENSGT00390000000860.a	ENSGT00940000156052.k.a	ENSGT00940000158358.b	ENSGT00930000151452	ENSGT00390000014907.A	ENSGT00950000183037.A.a	ENSGT00390000016435.g.b	ENSGT00940000157431.c.b
Percomorphaceae	ANCESTRAL SPECIES	27			ENSGT00390000009312.b #9	ENSGT00550000074815 #10	ENSGT00390000002211 #11	ENSGT00940000154928.c.a.a #12	ENSGT00940000155500.e #13	ENSGT00950000183149.C.a #14	ENSGT00940000159082 #15	ENSGT00390000016068 #16	ENSGT00390000015400 #17	ENSGT00940000155645.i.b #18	ENSGT00940000154146.b.a #19	ENSGT00950000182940.b.a.a.g.b #20	ENSGT00530000063712.a.a.o.b #21	ENSGT00530000063712.a.a.o.a #22	ENSGT00940000154876.a.a.a.b #23	ENSGT00940000154876.a.a.a.a #24	ENSGT00970000193421.C.b #25	ENSGT00940000156682.e.a #26	ENSGT00940000157771 #27	ENSGT00950000182843.a.a.a.b.a.a.a.b #28	ENSGT00390000001424.wb.b	ENSGT00390000000860.a	ENSGT00940000156052.k.a	ENSGT00940000158358.b	ENSGT00930000151452	ENSGT00390000014907.A	ENSGT00950000183037.A.a	ENSGT00390000016435.g.b	ENSGT00940000157431.c.b
Percomorphaceae_B	ANCESTRAL SPECIES	12	ENSGT01080000257410.A.f.l	ENSGT01050000244841.A.a.b.qb.a.b #8	ENSGT00390000009312.b #9	ENSGT00550000074815 #10	ENSGT00390000002211 #11	ENSGT00940000154928.c.a.a #12	ENSGT00940000155500.e #13	ENSGT00950000183149.C.a #14	ENSGT00940000159082 #15	ENSGT00390000016068 #16	ENSGT00390000015400 #17	ENSGT00940000155645.i.b #18	ENSGT00940000154146.b.a.m.a ##19	ENSGT00950000182940.b.a.a.g.b #20	ENSGT00530000063712.a.a.o.b #21	ENSGT00530000063712.a.a.o.a #22	ENSGT00940000154876.a.a.a.b #23	ENSGT00940000154876.a.a.a.a #24	ENSGT00970000193421.C.b #25	ENSGT00940000156682.e.a #26	ENSGT00940000157771 #27	ENSGT00950000182843.a.a.a.b.a.a.a.b #28	ENSGT00390000001424.wb.b	ENSGT00390000000860.a	ENSGT00940000156052.k.a	ENSGT00940000158358.b	ENSGT00930000151452	ENSGT00390000014907.A	ENSGT00950000183037.A.a	ENSGT00390000016435.g.b	ENSGT00940000157431.c.b
Percomorphaceae_C	ANCESTRAL SPECIES	11	ENSGT01050000244841.A.a.b.qb.a.b #8	ENSGT00940000163460.a.a.b	ENSGT00390000009312.b #9	ENSGT00550000074815 #10	ENSGT00390000002211 #11	ENSGT00940000154928.c.a.a #12	ENSGT00940000155500.e #13	ENSGT00950000183149.C.a #14	ENSGT00940000159082 #15	ENSGT00390000016068 #16	ENSGT00390000015400 #17	ENSGT00940000155645.i.b #18	ENSGT00940000154146.b.a.m.a ##19	ENSGT00950000182940.b.a.a.g.b #20	ENSGT00530000063712.a.a.o.b #21	ENSGT00530000063712.a.a.o.a #22	ENSGT00940000154876.a.a.a.b #23	ENSGT00940000154876.a.a.a.a #24	ENSGT00970000193421.C.b #25	ENSGT00940000156682.e.a #26	ENSGT00940000157771 #27	ENSGT00950000182843.a.a.a.b.a.a.a.b #28	ENSGT00390000001424.wb.b	ENSGT00390000000860.a	ENSGT00940000156052.k.a	ENSGT00940000158358.b	ENSGT00930000151452	ENSGT00390000014907.A	ENSGT00950000183037.A.a	ENSGT00390000016435.g.b	ENSGT00940000157431.c.b
Eupercaria	ANCESTRAL SPECIES	14	ENSGT01050000244841.A.a.b.qb.a.b #8	ENSGT00940000163460.a.a.b	ENSGT00390000009312.b #9	ENSGT00550000074815 #10	ENSGT00390000002211 #11	ENSGT00940000154928.c.a.a #12	ENSGT00940000155500.e #13	ENSGT00950000183149.C.a #14	ENSGT00940000159082 #15	ENSGT00390000016068 #16	ENSGT00390000015400 #17	ENSGT00940000155645.i.b #18	ENSGT00940000154146.b.a.m.a ##19	ENSGT00950000182940.b.a.a.g.b #20	ENSGT00530000063712.a.a.o.b #21	ENSGT00530000063712.a.a.o.a #22	ENSGT00940000154876.a.a.a.b #23	ENSGT00940000154876.a.a.a.a #24	ENSGT00970000193421.C.b #25	ENSGT00940000156682.e.a #26	ENSGT00940000157771 #27	ENSGT00950000182843.a.a.a.b.a.a.a.b #28	ENSGT00390000001424.wb.b	ENSGT00390000000860.a	ENSGT00940000156052.k.a	ENSGT00940000158358.b	ENSGT00930000151452	ENSGT00390000014907.A	ENSGT00950000183037.A.a	ENSGT00390000016435.g.b	ENSGT00940000157431.c.b
Eupecaria_A	ANCESTRAL SPECIES	15	ENSGT01050000244841.A.a.b.qb.a.b #8	ENSGT00940000163460.a.a.b	ENSGT00390000009312.b #9	ENSGT00550000074815 #10	ENSGT00390000002211 #11	ENSGT00940000154928.c.a.a #12	ENSGT00940000155500.e #13	ENSGT00950000183149.C.a #14	ENSGT00940000159082 #15	ENSGT00390000016068 #16	ENSGT00390000015400 #17	ENSGT00940000155645.i.b #18	ENSGT00940000154146.b.a.m.a ##19	ENSGT00950000182940.b.a.a.g.b #20	ENSGT00530000063712.a.a.o.b #21	ENSGT00530000063712.a.a.o.a #22	ENSGT00940000154876.a.a.a.b #23	ENSGT00940000154876.a.a.a.a #24	ENSGT00970000193421.C.b #25	ENSGT00940000156682.e.a #26	ENSGT00940000157771 #27	ENSGT00950000182843.a.a.a.b.a.a.a.b #28	ENSGT00390000001424.wb.b	ENSGT00390000000860.a	ENSGT00940000156052.k.a	ENSGT00940000158358.b	ENSGT00930000151452	ENSGT00390000014907.A	ENSGT00950000183037.A.a	ENSGT00390000016435.g.b	ENSGT00940000157431.c.b
Eupecaria_B	ANCESTRAL SPECIES	15	ENSGT01050000244841.A.a.b.qb.a.b #8	ENSGT00940000163460.a.a.b	ENSGT00390000009312.b #9	ENSGT00550000074815 #10	ENSGT00390000002211 #11	ENSGT00940000154928.c.a.a #12	ENSGT00940000155500.e #13	ENSGT00950000183149.C.a #14	ENSGT00940000159082 #15	ENSGT00390000016068 #16	ENSGT00390000015400 #17	ENSGT00940000155645.i.b #18	ENSGT00940000154146.b.a.m.a ##19	ENSGT00950000182940.b.a.a.g.b #20	ENSGT00530000063712.a.a.o.b #21	ENSGT00530000063712.a.a.o.a #22	ENSGT00940000154876.a.a.a.b #23	ENSGT00940000154876.a.a.a.a #24	ENSGT00970000193421.C.b #25	ENSGT00940000156682.e.a #26	ENSGT00940000157771 #27	ENSGT00950000182843.a.a.a.b.a.a.a.b #28	ENSGT00390000001424.wb.b	ENSGT00390000000860.a	ENSGT00940000156052.k.a	ENSGT00940000158358.b	ENSGT00930000151452	ENSGT00390000014907.A	ENSGT00950000183037.A.a	ENSGT00390000016435.g.b	ENSGT00940000157431.c.b
Perciformes	ANCESTRAL SPECIES	15	ENSGT00940000154720	ENSGT01050000244841.A.a.b.qb.a.b #8	ENSGT00390000009312.b #9	ENSGT00550000074815 #10	ENSGT00390000002211 #11	ENSGT00940000154928.c.a.a #12	ENSGT00940000155500.e #13	ENSGT00950000183149.C.a #14	ENSGT00940000159082 #15	ENSGT00390000016068 #16	ENSGT00390000015400 #17	ENSGT00940000155645.i.b #18	ENSGT00940000154146.b.a.m.b #19	ENSGT00950000182940.b.a.a.g.b #20	ENSGT00530000063712.a.a.o.b #21	ENSGT00530000063712.a.a.o.a #22	ENSGT00940000154876.a.a.a.b #23	ENSGT00940000154876.a.a.a.a #24	ENSGT00970000193421.C.b #25	ENSGT00940000156682.e.a #26	ENSGT00940000157771 #27	ENSGT00950000182843.a.a.a.b.a.a.a.b #28	ENSGT00390000001424.wb.b	ENSGT00390000000860.a	ENSGT00940000156052.k.a	ENSGT00940000158358.b	ENSGT00930000151452	ENSGT00390000014907.A	ENSGT00950000183037.A.a	ENSGT00390000016435.g.b	ENSGT00940000157431.c.b
Perciformes_a	ANCESTRAL SPECIES	13	ENSGT00940000154856.A.b.f #7	ENSGT01050000244841.A.a.b.qb.a.b #8	ENSGT00390000009312.b #9	ENSGT00550000074815 #10	ENSGT00390000002211 #11	ENSGT00940000154928.c.a.a #12	ENSGT00940000155500.e #13	ENSGT00950000183149.C.a #14	ENSGT00940000159082 #15	ENSGT00390000016068 #16	ENSGT00390000015400 #17	ENSGT00940000155645.i.b #18	ENSGT00940000154146.b.a.m.b #19	ENSGT00950000182940.b.a.a.g.b #20	ENSGT00530000063712.a.a.o.b #21	ENSGT00530000063712.a.a.o.a #22	ENSGT00940000154876.a.a.a.b #23	ENSGT00940000154876.a.a.a.a #24	ENSGT00970000193421.C.b #25	ENSGT00940000156682.e.a #26	ENSGT00940000157771 #27	ENSGT00950000182843.a.a.a.b.a.a.a.b #28	ENSGT00390000001424.wb.b	ENSGT00390000000860.a	ENSGT00940000156052.k.a	ENSGT00940000158358.b	ENSGT00930000151452	ENSGT00390000014907.A	ENSGT00950000183037.A.a	ENSGT00390000016435.g.b	ENSGT00940000157431.c.b
Pike perch	MODERN SPECIES	100	ENSSLUG00000021840 #7	ENSSLUG00000021844 #8	GLO1 (ENSSLUG00000021856) #9	eprs1 (ENSSLUG00000022139) #10	TDP1 (ENSSLUG00000024598) #11	hmbox1a (ENSSLUG00000024645) #12	KIF13B (ENSSLUG00000024720) #13	ENSSLUG00000024959 #14	PDPR (ENSSLUG00000024972) #15	mrps11 (ENSSLUG00000024992) #16	mrpl46 (ENSSLUG00000024994) #17	NTRK3 (ENSSLUG00000024999) #18	ENSSLUG00000025016 #19	sv2ba (ENSSLUG00000025032) #20	mespba (ENSSLUG00000025038) #21	mespaa (ENSSLUG00000025043) #22	ANPEP (ENSSLUG00000025113) #23	ANPEP (ENSSLUG00000025307) #24	ap3s2 (ENSSLUG00000025346) #25	igf1rb (ENSSLUG00000025493) #26	LRRC28 (ENSSLUG00000025824) #27	SNAP25 (ENSSLUG00000025825) #28	ENSSLUG00000025828 #29	MAPK8IP1 (ENSSLUG00000025830) #30
Channel bull blenny	MODERN SPECIES	17	ENSCGOG00000002300	ENSCGOG00000002298	SHANK2 (ENSCGOG00000002295)	CTTN (ENSCGOG00000002061)	ppfia1 (ENSCGOG00000001031)	ENSCGOG00000000982	ENSCGOG00000000971 #14	PDPR (ENSCGOG00000000920) #15	mrps11 (ENSCGOG00000000914) #16	mrpl46 (ENSCGOG00000000913) #17	NTRK3 (ENSCGOG00000000853) #18	ENSCGOG00000000842	ENSCGOG00000000840	sv2ba (ENSCGOG00000000812) #20	mespba (ENSCGOG00000000799) #21	mespaa (ENSCGOG00000000796) #22	ANPEP (ENSCGOG00000000704) #23	ap3s2 (ENSCGOG00000000654) #25	ENSCGOG00000000647 #26	ENSCGOG00000000644	lsm14ab (ENSCGOG00000000640)	ss18l2 (ENSCGOG00000000637)	GARRE1 (ENSCGOG00000000516)	gpib (ENSCGOG00000024133)	wtip (ENSCGOG00000024096)	sdr42e1 (ENSCGOG00000024095)	cnep1r1 (ENSCGOG00000024091)	heatr3 (ENSCGOG00000024017)	tent4b (ENSCGOG00000024003)	adcy7 (ENSCGOG00000023963)	brd7 (ENSCGOG00000023953)
Cottioidei	ANCESTRAL SPECIES	35	ENSGT01080000257410.A.f.l	ENSGT01050000244841.A.a.b.qb.a.b #8	ENSGT00390000009312.b #9	ENSGT00550000074815 #10	ENSGT00390000002211 #11	ENSGT00940000154928.c.a.a #12	ENSGT00940000155500.e #13	ENSGT00950000183149.C.a #14	ENSGT00940000159082 #15	ENSGT00390000016068 #16	ENSGT00390000015400 #17	ENSGT00940000155645.i.b #18	ENSGT00940000154146.b.a.m.b #19	ENSGT00950000182940.b.a.a.g.b #20	ENSGT00530000063712.a.a.o.b #21	ENSGT00530000063712.a.a.o.a #22	ENSGT00940000154876.a.a.a.b #23	ENSGT00940000154876.a.a.a.a #24	ENSGT00970000193421.C.b #25	ENSGT00940000156682.e.a #26	ENSGT00940000157771 #27	ENSGT00950000182843.a.a.a.b.a.a.a.b #28	ENSGT00390000001424.wb.b	ENSGT00390000000860.a	ENSGT00940000156052.k.a	ENSGT00940000158358.b	ENSGT00390000014907.A	ENSGT00950000183037.A.a	ENSGT00390000016435.g.b	ENSGT00940000157431.c.b	ENSGT00950000182938.b.b.b.b.a
Stickleback	MODERN SPECIES	1	ENSGACG00000014846	SLCO3A1 (ENSGACG00000014835)	gnrhr2 (ENSGACG00000014832) #8	GLO1 (ENSGACG00000014828) #9	eprs1 (ENSGACG00000014823) #10	ENSGACG00000014815 #11	hmbox1a (ENSGACG00000014814) #12	KIF13B (ENSGACG00000014807) #13	ENSGACG00000014805 #14	PDPR (ENSGACG00000014795) #15	mrps11 (ENSGACG00000014791) #16	mrpl46 (ENSGACG00000014786) #17	NTRK3 (ENSGACG00000014782) #18	ENSGACG00000014778 ##19	sv2ba (ENSGACG00000014764) #20	mespaa (ENSGACG00000014761) #22	ANPEP (ENSGACG00000014748) #23	ap3s2 (ENSGACG00000014734) #25	igf1rb (ENSGACG00000014729) #26	LRRC28 (ENSGACG00000014725) #27	SNAP25 (ENSGACG00000014706) #28	COX5A (ENSGACG00000014702)	ENSGACG00000014696	ENSGACG00000014694	ENSGACG00000014688	cyp1a (ENSGACG00000014674)	edc3 (ENSGACG00000014671)	CSK (ENSGACG00000014659)	cplx3a (ENSGACG00000014657)	ulk3 (ENSGACG00000014651)	ENSGACG00000014631
Lumpfish	MODERN SPECIES	18	gnrhr2 (ENSCLMG00005017208) #8	GLO1 (ENSCLMG00005017209) #9	eprs1 (ENSCLMG00005017232) #10	TDP1 (ENSCLMG00005017721) #11	hmbox1a (ENSCLMG00005017732) #12	KIF13B (ENSCLMG00005017782) #13	ENSCLMG00005019795 #14	PDPR (ENSCLMG00005019797) #15	mrps11 (ENSCLMG00005019803) #16	mrpl46 (ENSCLMG00005019804) #17	NTRK3 (ENSCLMG00005019805) #18	ENSCLMG00005019807 #19	ENSCLMG00005019811 #19	sv2ba (ENSCLMG00005019819) #20	mespba (ENSCLMG00005019831) #21	mespaa (ENSCLMG00005019833) #22	ANPEP (ENSCLMG00005019880) #23	ANPEP (ENSCLMG00005020525) #24	AP3S2 (ENSCLMG00005020579) #25	igf1rb (ENSCLMG00005020609) #26	LRRC28 (ENSCLMG00005022011) #27	SNAP25 (ENSCLMG00005022015) #28	COX5A (ENSCLMG00005022016)	fam219b (ENSCLMG00005022017)	ENSCLMG00005022018	ENSCLMG00005022020	cyp1a (ENSCLMG00005022023)	EDC3 (ENSCLMG00005000006)	CSK (ENSCLMG00005000057)	cplx3a (ENSCLMG00005000747)	ENSCLMG00005000749
Eupecaria_C	ANCESTRAL SPECIES	11	ENSGT01080000257410.A.f.l	ENSGT01050000244841.A.a.b.qb.a.b #8	ENSGT00390000009312.b #9	ENSGT00550000074815 #10	ENSGT00390000002211 #11	ENSGT00940000154928.c.a.a #12	ENSGT00940000155500.e #13	ENSGT00950000183149.C.a #14	ENSGT00940000159082 #15	ENSGT00390000016068 #16	ENSGT00390000015400 #17	ENSGT00940000155645.i.b #18	ENSGT00940000154146.b.a.m.a ##19	ENSGT00950000182940.b.a.a.g.b #20	ENSGT00530000063712.a.a.o.b #21	ENSGT00530000063712.a.a.o.a #22	ENSGT00940000154876.a.a.a.b #23	ENSGT00940000154876.a.a.a.a #24	ENSGT00970000193421.C.b #25	ENSGT00940000156682.e.a #26	ENSGT00940000157771 #27	ENSGT00950000182843.a.a.a.b.a.a.a.b #28	ENSGT00390000001424.wb.b	ENSGT00390000000860.a	ENSGT00940000156052.k.a	ENSGT00940000158358.b	ENSGT00930000151452	ENSGT00390000014907.A	ENSGT00950000183037.A.a	ENSGT00390000016435.g.b	ENSGT00940000157431.c.b
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	7	ENSGT01080000257410.A.f.l	ENSGT01050000244841.A.a.b.qb.a.b #8	ENSGT00390000009312.b #9	ENSGT00550000074815 #10	ENSGT00390000002211 #11	ENSGT00940000154928.c.a.a #12	ENSGT00940000155500.e #13	ENSGT00950000183149.C.a #14	ENSGT00940000159082 #15	ENSGT00390000016068 #16	ENSGT00390000015400 #17	ENSGT00940000155645.i.b #18	ENSGT00940000154146.b.a.m.a ##19	ENSGT00950000182940.b.a.a.g.b #20	ENSGT00530000063712.a.a.o.b #21	ENSGT00530000063712.a.a.o.a #22	ENSGT00940000154876.a.a.a.b #23	ENSGT00940000154876.a.a.a.a #24	ENSGT00970000193421.C.b #25	ENSGT00940000156682.e.a #26	ENSGT00940000157771 #27	ENSGT00950000182843.a.a.a.b.a.a.a.b #28	ENSGT00390000001424.wb.b	ENSGT00390000000860.a	ENSGT00940000156052.k.a	ENSGT00940000158358.b	ENSGT00930000151452	ENSGT00390000014907.A	ENSGT00950000183037.A.a	ENSGT00390000016435.g.b	ENSGT00940000157431.c.b
Large yellow croaker	MODERN SPECIES	480	ENSLCRG00005021656 #8	ENSLCRG00005021655	GLO1 (ENSLCRG00005021653) #9	eprs1 (ENSLCRG00005020114) #10	TDP1 (ENSLCRG00005020076) #11	hmbox1a (ENSLCRG00005020072) #12	KIF13B (ENSLCRG00005017267) #13	ENSLCRG00005017214 #14	PDPR (ENSLCRG00005017184) #15	mrps11 (ENSLCRG00005017180) #16	mrpl46 (ENSLCRG00005017179) #17	NTRK3 (ENSLCRG00005016786) #18	ENSLCRG00005016779 ##19	sv2ba (ENSLCRG00005016553) #20	mespba (ENSLCRG00005016550) #21	mespaa (ENSLCRG00005016549) #22	ANPEP (ENSLCRG00005016136) #23	ANPEP (ENSLCRG00005015914) #24	ap3s2 (ENSLCRG00005015910) #25	igf1rb (ENSLCRG00005012567) #26	LRRC28 (ENSLCRG00005012542) #27	SNAP25 (ENSLCRG00005012537) #28	COX5A (ENSLCRG00005012535)	fam219b (ENSLCRG00005012530)	ENSLCRG00005012528	ENSLCRG00005012524	ENSLCRG00005012522	ENSLCRG00005012520	cyp1a (ENSLCRG00005012519)	edc3 (ENSLCRG00005012518)	CSK (ENSLCRG00005010929)
Gilthead seabream	MODERN SPECIES	18	ENSSAUG00010026017	GLO1 (ENSSAUG00010026016) #9	eprs1 (ENSSAUG00010024284) #10	TDP1 (ENSSAUG00010024086) #11	hmbox1a (ENSSAUG00010024085) #12	KIF13B (ENSSAUG00010024064) #13	ENSSAUG00010024053 #14	PDPR (ENSSAUG00010023846) #15	mrps11 (ENSSAUG00010023841) #16	mrpl46 (ENSSAUG00010023839) #17	NTRK3 (ENSSAUG00010023776) #18	ENSSAUG00010023763 ##19	ENSSAUG00010023754 ##19	sv2ba (ENSSAUG00010023666) #20	mespba (ENSSAUG00010023650) #21	mespaa (ENSSAUG00010023648) #22	ANPEP (ENSSAUG00010023403) #23	ANPEP (ENSSAUG00010023189) #24	ap3s2 (ENSSAUG00010023180) #25	igf1rb (ENSSAUG00010022954) #26	LRRC28 (ENSSAUG00010022944) #27	SNAP25 (ENSSAUG00010022941) #28	COX5a2 (ENSSAUG00010022937)	fam219b (ENSSAUG00010022936)	ENSSAUG00010022934	ENSSAUG00010022931	ENSSAUG00010022923	ENSSAUG00010022922	gatm (ENSSAUG00010022921)	ENSSAUG00010022874	slc27a2a (ENSSAUG00010022708)
Ballan wrasse	DUPLICATION
Ballan wrasse	DUPLICATION
Ballan wrasse	MODERN SPECIES	929														sv2ba (ENSLBEG00000006657) #20	ENSLBEG00000006856 #21	ENSLBEG00000006884 #22	ANPEP (ENSLBEG00000007049) #23	ANPEP (ENSLBEG00000007647) #24	ap3s2 (ENSLBEG00000008117) #25
Ballan wrasse	MODERN SPECIES	2383																ENSLBEG00000003128 #22	ANPEP (ENSLBEG00000003064) #23
Ballan wrasse	MODERN SPECIES	1640															ENSLBEG00000009955 #21	ENSLBEG00000009977 #22	ENSLBEG00000010003 #23
Tetraodontidae	ANCESTRAL SPECIES	46	ENSGT01080000257410.A.f.l	ENSGT01050000244841.A.a.b.qb.a.b #8	ENSGT00390000009312.b #9	ENSGT00550000074815 #10	ENSGT00390000002211 #11	ENSGT00940000154928.c.a.a #12	ENSGT00940000155500.e #13	ENSGT00950000183149.C.a #14	ENSGT00940000159082 #15	ENSGT00390000016068 #16	ENSGT00390000015400 #17	ENSGT00940000155645.i.b #18	ENSGT00940000154146.b.a.m.a ##19	ENSGT00950000182940.b.a.a.g.b #20	ENSGT00530000063712.a.a.o.b #21	ENSGT00530000063712.a.a.o.a #22	ENSGT00940000154876.a.a.a.b #23	ENSGT00940000154876.a.a.a.a #24	ENSGT00970000193421.C.b #25	ENSGT00940000156682.e.a #26	ENSGT00940000157771 #27	ENSGT00950000182843.a.a.a.b.a.a.a.b #28	ENSGT00390000001424.wb.b	ENSGT00390000000860.a	ENSGT00940000156052.k.a	ENSGT00940000158358.b
Fugu	MODERN SPECIES	4	ENSTRUG00000007534 #8	GLO1 (ENSTRUG00000007411) #9	eprs1 (ENSTRUG00000006901) #10	TDP1 (ENSTRUG00000006521) #11	hmbox1a (ENSTRUG00000006366) #12	KIF13B (ENSTRUG00000005689) #13	ENSTRUG00000005668 #14	PDPR (ENSTRUG00000004703) #15	mrps11 (ENSTRUG00000020346) #16	mrpl46 (ENSTRUG00000023585) #17	NTRK3 (ENSTRUG00000002667) #18	ENSTRUG00000033270	ENSTRUG00000021927 ##19	sv2ba (ENSTRUG00000015251) #20	mespba (ENSTRUG00000020616) #21	mespaa (ENSTRUG00000022932) #22	ANPEP (ENSTRUG00000023856) #23	ANPEP (ENSTRUG00000015317) #24	ap3s2 (ENSTRUG00000015431) #25	igf1rb (ENSTRUG00000015459) #26	LRRC28 (ENSTRUG00000015594) #27	SNAP25 (ENSTRUG00000015620) #28	cox5aa (ENSTRUG00000015647)	fam219b (ENSTRUG00000022531)	ENSTRUG00000024094	ENSTRUG00000024639	ENSTRUG00000024847	THSD4 (ENSTRUG00000028384)	ENSTRUG00000015724	fgf3 (ENSTRUG00000027654)	lto1 (ENSTRUG00000026152)
Tetraodon	MODERN SPECIES	26	hmbox1a (ENSTNIG00000011904) #12	KIF13B (ENSTNIG00000011905) #13	ENSTNIG00000011906 #14	ENSTNIG00000011907 #15	PDPR (ENSTNIG00000011908) #15	mrps11 (ENSTNIG00000011909) #16	mrpl46 (ENSTNIG00000011910) #17	NTRK3 (ENSTNIG00000011911) #18	ENSTNIG00000003131	LHFPL4 (ENSTNIG00000011912)	ENSTNIG00000011913	ENSTNIG00000011914 ##19	ENSTNIG00000011915 ##19	sv2ba (ENSTNIG00000011916) #20	mespba (ENSTNIG00000011917) #21	mespaa (ENSTNIG00000000556) #22	ANPEP (ENSTNIG00000011918) #23	ANPEP (ENSTNIG00000011919) #24	ap3s2 (ENSTNIG00000011920) #25	igf1rb (ENSTNIG00000011921) #26	LRRC28 (ENSTNIG00000011922) #27	SNAP25 (ENSTNIG00000011923) #28	cox5aa (ENSTNIG00000011924)	fam219b (ENSTNIG00000011925)	ENSTNIG00000016048	ENSTNIG00000001218	larp6a (ENSTNIG00000011926)	tm2d3 (ENSTNIG00000011927)	ENSTNIG00000011928	ulk3 (ENSTNIG00000001896)	cplx3a (ENSTNIG00000011930)
Percomorphaceae_D	ANCESTRAL SPECIES	11	ENSGT01050000244841.A.a.b.qb.a.b #8	ENSGT00940000163460.a.a.b	ENSGT00390000009312.b #9	ENSGT00550000074815 #10	ENSGT00390000002211 #11	ENSGT00940000154928.c.a.a #12	ENSGT00940000155500.e #13	ENSGT00950000183149.C.a #14	ENSGT00940000159082 #15	ENSGT00390000016068 #16	ENSGT00390000015400 #17	ENSGT00940000155645.i.b #18	ENSGT00940000154146.b.a.m.a ##19	ENSGT00950000182940.b.a.a.g.b #20	ENSGT00530000063712.a.a.o.b #21	ENSGT00530000063712.a.a.o.a #22	ENSGT00940000154876.a.a.a.b #23	ENSGT00940000154876.a.a.a.a #24	ENSGT00970000193421.C.b #25	ENSGT00940000156682.e.a #26	ENSGT00940000157771 #27	ENSGT00950000182843.a.a.a.b.a.a.a.b #28	ENSGT00390000001424.wb.b	ENSGT00390000000860.a	ENSGT00940000156052.k.a	ENSGT00940000158358.b	ENSGT00930000151452	ENSGT00390000014907.A	ENSGT00950000183037.A.a	ENSGT00390000016435.g.b	ENSGT00940000157431.c.b
Carangaria	ANCESTRAL SPECIES	11	ENSGT01050000244841.A.a.b.qb.a.b #8	ENSGT00940000163460.a.a.b	ENSGT00390000009312.b #9	ENSGT00550000074815 #10	ENSGT00390000002211 #11	ENSGT00940000154928.c.a.a #12	ENSGT00940000155500.e #13	ENSGT00950000183149.C.a #14	ENSGT00940000159082 #15	ENSGT00390000016068 #16	ENSGT00390000015400 #17	ENSGT00940000155645.i.b #18	ENSGT00940000154146.b.a.m.a ##19	ENSGT00950000182940.b.a.a.g.b #20	ENSGT00530000063712.a.a.o.b #21	ENSGT00530000063712.a.a.o.a #22	ENSGT00940000154876.a.a.a.b #23	ENSGT00940000154876.a.a.a.a #24	ENSGT00970000193421.C.b #25	ENSGT00940000156682.e.a #26	ENSGT00940000157771 #27	ENSGT00950000182843.a.a.a.b.a.a.a.b #28	ENSGT00390000001424.wb.b	ENSGT00390000000860.a	ENSGT00940000156052.k.a	ENSGT00940000158358.b	ENSGT00930000151452	ENSGT00390000014907.A	ENSGT00950000183037.A.a	ENSGT00390000016435.g.b	ENSGT00940000157431.c.b
Pleuronectoidei	ANCESTRAL SPECIES	10	ENSGT00940000163716.d.b	ENSGT01050000244841.A.a.b.qb.a.b #8	ENSGT00390000009312.b #9	ENSGT00550000074815 #10	ENSGT00390000002211 #11	ENSGT00940000154928.c.a.a #12	ENSGT00940000155500.e #13	ENSGT00950000183149.C.a #14	ENSGT00940000159082 #15	ENSGT00390000016068 #16	ENSGT00390000015400 #17	ENSGT00940000155645.i.b #18	ENSGT00940000154146.b.a.m.a ##19	ENSGT00950000182940.b.a.a.g.b #20	ENSGT00530000063712.a.a.o.b #21	ENSGT00530000063712.a.a.o.a #22	ENSGT00940000154876.a.a.a.b #23	ENSGT00940000154876.a.a.a.a #24	ENSGT00970000193421.C.b #25	ENSGT00940000156682.e.a #26	ENSGT00940000157771 #27	ENSGT00950000182843.a.a.a.b.a.a.a.b #28	ENSGT00390000001424.wb.b	ENSGT00390000000860.a	ENSGT00940000156052.k.a	ENSGT00940000158358.b	ENSGT00930000151452.h	ENSGT00390000014907.A	ENSGT00950000183037.A.a	ENSGT00390000016435.g.b	ENSGT00940000157431.c.b
Tongue sole	MODERN SPECIES	15	ENSCSEG00000010205	ENSCSEG00000010238	eprs1 (ENSCSEG00000010266) #10	TDP1 (ENSCSEG00000010313) #11	hmbox1a (ENSCSEG00000010331) #12	KIF13B (ENSCSEG00000010552) #13	ENSCSEG00000010588 #14	PDPR (ENSCSEG00000010593) #15	mrps11 (ENSCSEG00000010615) #16	mrpl46 (ENSCSEG00000010621) #17	NTRK3 (ENSCSEG00000010626) #18	ENSCSEG00000010656 #19	ENSCSEG00000010687 #19	sv2ba (ENSCSEG00000010699) #20	mespba (ENSCSEG00000010719) #21	mespaa (ENSCSEG00000010740) #22	ANPEP (ENSCSEG00000010761) #24	ap3s2 (ENSCSEG00000010801) #25	igf1rb (ENSCSEG00000010813) #26	LRRC28 (ENSCSEG00000010856) #27	SNAP25 (ENSCSEG00000010877) #28	ENSCSEG00000010895	cox5aa (ENSCSEG00000010910)	fam219b (ENSCSEG00000010990)	ENSCSEG00000011000	ENSCSEG00000011022	ENSCSEG00000011039	ENSCSEG00000011049	cyp1a (ENSCSEG00000011070)	CSK (ENSCSEG00000011082)	cplx3a (ENSCSEG00000011098)
Turbot	MODERN SPECIES	17	ENSSMAG00000028375	ENSSMAG00000038051 #8	ENSSMAG00000011426 #9	ENSSMAG00000011150 #10	ENSSMAG00000011140 #11	hmbox1a (ENSSMAG00000011108) #12	ENSSMAG00000011045 #13	ENSSMAG00000026734 #14	ENSSMAG00000010992 #15	mrps11 (ENSSMAG00000010954) #16	mrpl46 (ENSSMAG00000010974) #17	NTRK3 (ENSSMAG00000010859) #18	ENSSMAG00000010778 ##19	sv2ba (ENSSMAG00000010684) #20	mespba (ENSSMAG00000026233) #21	ENSSMAG00000010662 #22	ENSSMAG00000010607 #23	ENSSMAG00000010589 #24	ENSSMAG00000010557 #25	ENSSMAG00000010426 #26	ENSSMAG00000010399 #27	ENSSMAG00000010322 #28	ENSSMAG00000010316	ENSSMAG00000036332	ENSSMAG00000010300	ENSSMAG00000010254	ENSSMAG00000010235	ENSSMAG00000010219	CYP1A2 (ENSSMAG00000010200)	ENSSMAG00000010176	CSK (ENSSMAG00000010099)
Carangaria_A	ANCESTRAL SPECIES	20	ENSGT01050000244841.A.a.b.qb.a.b #8	ENSGT00940000163460.a.a.b	ENSGT00390000009312.b #9	ENSGT00550000074815 #10	ENSGT00390000002211 #11	ENSGT00940000154928.c.a.a #12	ENSGT00940000155500.e #13	ENSGT00950000183149.C.a #14	ENSGT00940000159082 #15	ENSGT00390000016068 #16	ENSGT00390000015400 #17	ENSGT00940000155645.i.b #18	ENSGT00940000154146.b.a.m.a ##19	ENSGT00950000182940.b.a.a.g.b #20	ENSGT00530000063712.a.a.o.b #21	ENSGT00530000063712.a.a.o.a #22	ENSGT00940000154876.a.a.a.b #23	ENSGT00940000154876.a.a.a.a #24	ENSGT00970000193421.C.b #25	ENSGT00940000156682.e.a #26	ENSGT00940000157771 #27	ENSGT00950000182843.a.a.a.b.a.a.a.b #28	ENSGT00390000001424.wb.b	ENSGT00390000000860.a	ENSGT00940000156052.k.a	ENSGT00940000158358.b	ENSGT00930000151452	ENSGT00390000014907.A	ENSGT00950000183037.A.a	ENSGT00390000016435.g.b	ENSGT00940000157431.c.b
Barramundi perch	MODERN SPECIES	105	ENSLCAG00010027393	ENSLCAG00010027389	fam219b (ENSLCAG00010027388)	TDP1 (ENSLCAG00010027374) #11	hmbox1a (ENSLCAG00010027366) #12	KIF13B (ENSLCAG00010027252) #13	ENSLCAG00010027106 #14	PDPR (ENSLCAG00010027089) #15	mrps11 (ENSLCAG00010027082) #16	mrpl46 (ENSLCAG00010027081) #17	NTRK3 (ENSLCAG00010027075) #18	ENSLCAG00010027071 ##19	ENSLCAG00010027068 ##19	sv2ba (ENSLCAG00010027063) #20	mespba (ENSLCAG00010027060) #21	mespaa (ENSLCAG00010027057) #22	ANPEP (ENSLCAG00010027048) #23	ANPEP (ENSLCAG00010027022) #24	ap3s2 (ENSLCAG00010026999) #25	igf1rb (ENSLCAG00010026927) #26	LRRC28 (ENSLCAG00010026907) #27	SNAP25 (ENSLCAG00010026905) #28	ENSLCAG00010026901	ENSLCAG00010026900	ENSLCAG00010026899	eprs1 (ENSLCAG00010026871) #10	GLO1 (ENSLCAG00010026852) #9	ENSLCAG00010026851	ENSLCAG00010026850 #8	ENSLCAG00010026849	ENSLCAG00010026846
Seriola	ANCESTRAL SPECIES	13	ENSGT00940000163716.d.b	ENSGT01050000244841.A.a.b.qb.a.b #8	ENSGT00390000009312.b #9	ENSGT00550000074815 #10	ENSGT00390000002211 #11	ENSGT00940000154928.c.a.a #12	ENSGT00940000155500.e #13	ENSGT00950000183149.C.a #14	ENSGT00940000159082 #15	ENSGT00390000016068 #16	ENSGT00390000015400 #17	ENSGT00940000155645.i.b #18	ENSGT00940000154146.b.a.m.a ##19	ENSGT00950000182940.b.a.a.g.b #20	ENSGT00530000063712.a.a.o.b #21	ENSGT00530000063712.a.a.o.a #22	ENSGT00940000154876.a.a.a.b #23	ENSGT00940000154876.a.a.a.a #24	ENSGT00970000193421.C.b #25	ENSGT00940000156682.e.a #26	ENSGT00940000157771 #27	ENSGT00950000182843.a.a.a.b.a.a.a.b #28	ENSGT00390000001424.wb.b	ENSGT00390000000860.a	ENSGT00940000156052.k.a	ENSGT00940000158358.b	ENSGT00930000151452	ENSGT00390000014907.A	ENSGT00950000183037.A.a	ENSGT00390000016435.g.b	ENSGT00940000157431.c.b
Yellowtail amberjack	MODERN SPECIES	3186	GLO1 (ENSSLDG00000015086) #9	eprs1 (ENSSLDG00000015153) #10	TDP1 (ENSSLDG00000015413) #11	hmbox1a (ENSSLDG00000015485) #12	KIF13B (ENSSLDG00000015535) #13	ENSSLDG00000015579 #14	PDPR (ENSSLDG00000015598) #15	mrps11 (ENSSLDG00000015652) #16	mrpl46 (ENSSLDG00000015671) #17	NTRK3 (ENSSLDG00000015705) #18	ENSSLDG00000015782 ##19	ANPEP (ENSSLDG00000015869) #23	ENSSLDG00000016072 ##19	sv2ba (ENSSLDG00000016100) #20	mespba (ENSSLDG00000016123) #21	mespaa (ENSSLDG00000016134) #22	ANPEP (ENSSLDG00000016157) #24	ap3s2 (ENSSLDG00000016191) #25	igf1rb (ENSSLDG00000016218) #26	LRRC28 (ENSSLDG00000016277) #27	SNAP25 (ENSSLDG00000016298) #28	COX5A (ENSSLDG00000016326)	fam219b (ENSSLDG00000016348)	ENSSLDG00000016359	ENSSLDG00000016381	ENSSLDG00000016396	ENSSLDG00000016405	cyp1a (ENSSLDG00000016420)	ENSSLDG00000016431	CSK (ENSSLDG00000016451)	cplx3a (ENSSLDG00000016499)
Greater amberjack	MODERN SPECIES	1	ENSSDUG00000009060 #8	GLO1 (ENSSDUG00000008983) #9	eprs1 (ENSSDUG00000008910) #10	TDP1 (ENSSDUG00000008869) #11	hmbox1a (ENSSDUG00000008816) #12	KIF13B (ENSSDUG00000008546) #13	ENSSDUG00000008514 #14	PDPR (ENSSDUG00000008482) #15	mrps11 (ENSSDUG00000008450) #16	mrpl46 (ENSSDUG00000008387) #17	NTRK3 (ENSSDUG00000008337) #18	ENSSDUG00000008310 ##19	ENSSDUG00000008270 ##19	sv2ba (ENSSDUG00000008252) #20	mespba (ENSSDUG00000008248) #21	mespaa (ENSSDUG00000008233) #22	ANPEP (ENSSDUG00000008046) #23	ANPEP (ENSSDUG00000008006) #24	ap3s2 (ENSSDUG00000007981) #25	IGF1R (ENSSDUG00000007895) #26	LRRC28 (ENSSDUG00000007831) #27	SNAP25 (ENSSDUG00000007809) #28	COX5A (ENSSDUG00000007791)	fam219b (ENSSDUG00000007775)	ENSSDUG00000007759	ENSSDUG00000007745	ENSSDUG00000007724	ENSSDUG00000007715	cyp1a (ENSSDUG00000007695)	edc3 (ENSSDUG00000007671)	CSK (ENSSDUG00000007607)
Anabantaria	ANCESTRAL SPECIES	11	ENSGT01050000244841.A.a.b.qb.a.b #8	ENSGT00940000163460.a.a.b	ENSGT00390000009312.b #9	ENSGT00550000074815 #10	ENSGT00390000002211 #11	ENSGT00940000154928.c.a.a #12	ENSGT00940000155500.e #13	ENSGT00950000183149.C.a #14	ENSGT00940000159082 #15	ENSGT00390000016068 #16	ENSGT00390000015400 #17	ENSGT00940000155645.i.b #18	ENSGT00940000154146.b.a.m.a ##19	ENSGT00950000182940.b.a.a.g.b #20	ENSGT00530000063712.a.a.o.b #21	ENSGT00530000063712.a.a.o.a #22	ENSGT00940000154876.a.a.a.b #23	ENSGT00940000154876.a.a.a.a #24	ENSGT00970000193421.C.b #25	ENSGT00940000156682.e.a #26	ENSGT00940000157771 #27	ENSGT00950000182843.a.a.a.b.a.a.a.b #28	ENSGT00390000001424.wb.b	ENSGT00390000000860.a	ENSGT00940000156052.k.a	ENSGT00940000158358.b	ENSGT00930000151452	ENSGT00390000014907.A	ENSGT00950000183037.A.a	ENSGT00390000016435.g.b	ENSGT00940000157431.c.b
Zig-zag eel	MODERN SPECIES	17	ENSMAMG00000005558	ENSMAMG00000005574 #8	ENSMAMG00000006063 #9	ENSMAMG00000006099 #10	ENSMAMG00000006272 #11	hmbox1a (ENSMAMG00000006331) #12	ENSMAMG00000006376 #13	ENSMAMG00000006518 #14	ENSMAMG00000006529 #15	mrps11 (ENSMAMG00000006581) #16	mrpl46 (ENSMAMG00000006593) #17	NTRK3 (ENSMAMG00000006607) #18	ENSMAMG00000006728 ##19	sv2ba (ENSMAMG00000006746) #20	mespba (ENSMAMG00000024292) #21	mespaa (ENSMAMG00000006779) #22	ENSMAMG00000006797 #23	ENSMAMG00000006815 #24	ENSMAMG00000028682 #25	igf1rb (ENSMAMG00000006856) #26	ENSMAMG00000006912 #27	ENSMAMG00000006952 #28	ENSMAMG00000028118	ENSMAMG00000025788 #7	ENSMAMG00000026945	ENSMAMG00000028057	ENSMAMG00000025521	ENSMAMG00000008190	ENSMAMG00000008221	ENSMAMG00000025751	ENSMAMG00000008530
Anabantoidei	ANCESTRAL SPECIES	8	ENSGT01050000244841.A.a.b.qb.a.b #8	ENSGT00940000163460.a.a.b	ENSGT00390000009312.b #9	ENSGT00550000074815 #10	ENSGT00390000002211 #11	ENSGT00940000154928.c.a.a #12	ENSGT00940000155500.e #13	ENSGT00950000183149.C.a #14	ENSGT00940000159082 #15	ENSGT00390000016068 #16	ENSGT00390000015400 #17	ENSGT00940000155645.i.b #18	ENSGT00940000154146.b.a.m.a ##19	ENSGT00950000182940.b.a.a.g.b #20	ENSGT00530000063712.a.a.o.b #21	ENSGT00530000063712.a.a.o.a #22	ENSGT00940000154876.a.a.a.b #23	ENSGT00940000154876.a.a.a.a #24	ENSGT00970000193421.C.b #25	ENSGT00940000156682.e.a #26	ENSGT00940000157771 #27	ENSGT00950000182843.a.a.a.b.a.a.a.b #28	ENSGT00390000001424.wb.b	ENSGT00390000000860.a	ENSGT00940000156052.k.a	ENSGT00940000158358.b	ENSGT00930000151452	ENSGT00390000014907.A	ENSGT00950000183037.A.a	ENSGT00390000016435.g.b	ENSGT00940000157431.c.b
Siamese fighting fish	MODERN SPECIES	14	ENSBSLG00000017585	ENSBSLG00000017602	GLO1 (ENSBSLG00000017626) #9	eprs1 (ENSBSLG00000017848) #10	TDP1 (ENSBSLG00000020645) #11	hmbox1a (ENSBSLG00000021005) #12	KIF13B (ENSBSLG00000021233) #13	ENSBSLG00000021694 #14	PDPR (ENSBSLG00000021728) #15	mrps11 (ENSBSLG00000021862) #16	mrpl46 (ENSBSLG00000021874) #17	NTRK3 (ENSBSLG00000021924) #18	ENSBSLG00000022468 ##19	sv2ba (ENSBSLG00000022546) #20	mespba (ENSBSLG00000022631) #21	mespaa (ENSBSLG00000022636) #22	ANPEP (ENSBSLG00000022639) #23	ANPEP (ENSBSLG00000022664) #24	ap3s2 (ENSBSLG00000022766) #25	igf1rb (ENSBSLG00000023039) #26	LRRC28 (ENSBSLG00000024772) #27	SNAP25 (ENSBSLG00000024781) #28	cox5aa (ENSBSLG00000024788)	fam219b (ENSBSLG00000024793)	ENSBSLG00000024794	gnrhr2 (ENSBSLG00000024798) #8	SLCO3A1 (ENSBSLG00000024809)	ENSBSLG00000024867	ENSBSLG00000024895	ENSBSLG00000024956	ABCC12 (ENSBSLG00000024986)
Climbing perch	MODERN SPECIES	16	ENSATEG00000006661 #8	ENSATEG00000027840	ENSATEG00000006651 #9	ENSATEG00000006493 #10	ENSATEG00000006461 #11	hmbox1a (ENSATEG00000006405) #12	ENSATEG00000005800 #13	ENSATEG00000005788 #14	ENSATEG00000005675 #15	mrps11 (ENSATEG00000005662) #16	mrpl46 (ENSATEG00000005654) #17	NTRK3 (ENSATEG00000005562) #18	ENSATEG00000005542 ##19	sv2ba (ENSATEG00000005250) #20	mespba (ENSATEG00000005218) #21	ENSATEG00000005199 #22	ENSATEG00000004967 #23	ENSATEG00000004490 #24	ENSATEG00000004445 #25	ENSATEG00000004408 #26	ENSATEG00000004356 #27	ENSATEG00000025281 #28	ENSATEG00000004299	ENSATEG00000004284	ENSATEG00000004272	ENSATEG00000004264	ENSATEG00000004224	CYP1A2 (ENSATEG00000004218)	ENSATEG00000004205	CSK (ENSATEG00000004157)	ENSATEG00000028710
Ovalentaria	ANCESTRAL SPECIES	17	ENSGT01050000244841.A.a.b.qb.a.b #8	ENSGT00390000009312.b #9	ENSGT00550000074815 #10	ENSGT00390000002211 #11	ENSGT00940000154928.c.a.a #12	ENSGT00940000155500.e #13	ENSGT00950000183149.C.a #14	ENSGT00940000159082 #15	ENSGT00390000016068 #16	ENSGT00390000015400 #17	ENSGT00940000155645.i.b #18	ENSGT00940000154146.b.a.m.b #19	ENSGT00940000154146.b.a.m.a ##19	ENSGT00950000182940.b.a.a.g.b #20	ENSGT00530000063712.a.a.o.b #21	ENSGT00530000063712.a.a.o.a #22	ENSGT00940000154876.a.a.a.b #23	ENSGT00940000154876.a.a.a.a #24	ENSGT00970000193421.C.b #25	ENSGT00940000156682.e.a #26	ENSGT00940000157771 #27	ENSGT00950000182843.a.a.a.b.a.a.a.b #28	ENSGT00390000001424.wb.b	ENSGT00390000000860.a	ENSGT00940000156052.k.a	ENSGT00940000158358.b	ENSGT00930000151452	ENSGT00390000014907.A	ENSGT00950000183037.A.a	ENSGT00390000016435.g.b	ENSGT00940000157431.c.b
Ovalentaria_B	ANCESTRAL SPECIES	10	ENSGT01050000244841.A.a.b.qb.a.b #8	ENSGT00390000009312.b #9	ENSGT00550000074815 #10	ENSGT00390000002211 #11	ENSGT00940000154928.c.a.a #12	ENSGT00940000155500.e #13	ENSGT00950000183149.C.a #14	ENSGT00940000159082 #15	ENSGT00390000016068 #16	ENSGT00390000015400 #17	ENSGT00940000155645.i.b #18	ENSGT00940000154146.b.a.m.b #19	ENSGT00940000154146.b.a.m.a ##19	ENSGT00950000182940.b.a.a.g.b #20	ENSGT00530000063712.a.a.o.b #21	ENSGT00530000063712.a.a.o.a #22	ENSGT00940000154876.a.a.a.b #23	ENSGT00940000154876.a.a.a.a #24	ENSGT00970000193421.C.b #25	ENSGT00940000156682.e.a #26	ENSGT00940000157771 #27	ENSGT00950000182843.a.a.a.b.a.a.a.b #28	ENSGT00390000001424.wb.b	ENSGT00390000000860.a	ENSGT00940000156052.k.a	ENSGT00940000158358.b	ENSGT00930000151452	ENSGT00390000014907.A	ENSGT00950000183037.A.a	ENSGT00390000016435.g.b	ENSGT00940000157431.c.b
Pomacentridae	ANCESTRAL SPECIES	79							ENSGT00950000183149.C.a #14	ENSGT00940000159082 #15	ENSGT00390000016068 #16	ENSGT00390000015400 #17	ENSGT00940000155645.i.b #18	ENSGT00940000154146.b.a.m.b #19	ENSGT00940000154146.b.a.m.a ##19	ENSGT00950000182940.b.a.a.g.b #20	ENSGT00530000063712.a.a.o.b #21	ENSGT00530000063712.a.a.o.a #22	ENSGT00940000154876.a.a.a.b #23	ENSGT00940000154876.a.a.a.a #24	ENSGT00970000193421.C.b #25	ENSGT00940000156682.e.a #26	ENSGT00940000157771 #27	ENSGT00950000182843.a.a.a.b.a.a.a.b #28	ENSGT00390000001424.wb.b	ENSGT00390000000860.a	ENSGT00940000156052.k.a	ENSGT00940000158358.b	ENSGT00930000151452	ENSGT00390000014907.A	ENSGT00950000183037.A.a	ENSGT00390000016435.g.b	ENSGT00940000157431.c.b
Pomacentridae_A	ANCESTRAL SPECIES	78							ENSGT00950000183149.C.a #14	ENSGT00940000159082 #15	ENSGT00390000016068 #16	ENSGT00390000015400 #17	ENSGT00940000155645.i.b #18	ENSGT00940000154146.b.a.m.b #19	ENSGT00940000154146.b.a.m.a ##19	ENSGT00950000182940.b.a.a.g.b #20	ENSGT00530000063712.a.a.o.b #21	ENSGT00530000063712.a.a.o.a #22	ENSGT00940000154876.a.a.a.b #23	ENSGT00940000154876.a.a.a.a #24	ENSGT00970000193421.C.b #25	ENSGT00940000156682.e.a #26	ENSGT00940000157771 #27	ENSGT00950000182843.a.a.a.b.a.a.a.b #28	ENSGT00390000001424.wb.b	ENSGT00390000000860.a	ENSGT00940000156052.k.a	ENSGT00940000158358.b	ENSGT00930000151452	ENSGT00390000014907.A	ENSGT00950000183037.A.a	ENSGT00390000016435.g.b	ENSGT00940000157431.c.b
Amphiprion	ANCESTRAL SPECIES	111	ENSGT00530000063829.B	ENSGT00390000009077.c	ENSGT01080000257344.a.b.b.b.b.b.b.a.a.b.a.a.a	ENSGT01030000234589.g.a.e.a.c.a	ENSGT01080000257344.a.b.b.b.b.b.b.a.a.b.b.a	ENSGT01030000234589.g.a.e.a.c.b	ENSGT00950000183149.C.a #14	ENSGT00940000159082 #15	ENSGT00390000016068 #16	ENSGT00390000015400 #17	ENSGT00940000155645.i.b #18	ENSGT00940000154146.b.a.m.b #19	ENSGT00940000154146.b.a.m.a ##19	ENSGT00950000182940.b.a.a.g.b #20	ENSGT00530000063712.a.a.o.b #21	ENSGT00530000063712.a.a.o.a #22	ENSGT00940000154876.a.a.a.b #23	ENSGT00940000154876.a.a.a.a #24	ENSGT00970000193421.C.b #25	ENSGT00940000156682.e.a #26	ENSGT00940000157771 #27	ENSGT00950000182843.a.a.a.b.a.a.a.b #28	ENSGT00390000001424.wb.b	ENSGT00390000000860.a	ENSGT00940000156052.k.a	ENSGT00940000158358.b	ENSGT00390000014907.A	ENSGT00950000183037.A.a	ENSGT00390000016435.g.b	ENSGT00940000157431.c.b	ENSGT00950000182938.b.b.b.b.a
Clown anemonefish	MODERN SPECIES	3229		ENSAOCG00000013921	ENSAOCG00000013944	ENSAOCG00000013974	ENSAOCG00000013993	ENSAOCG00000014018 #14	PDPR (ENSAOCG00000000909) #15	mrps11 (ENSAOCG00000000916) #16	mrpl46 (ENSAOCG00000014108) #17	NTRK3 (ENSAOCG00000014175) #18	ENSAOCG00000014223 ##19	ENSAOCG00000014234 ##19	ENSAOCG00000014263 ##19	sv2ba (ENSAOCG00000014489) #20	mespba (ENSAOCG00000014528) #21	mespaa (ENSAOCG00000014575) #22	ANPEP (ENSAOCG00000014657) #23	ANPEP (ENSAOCG00000014707) #24	ap3s2 (ENSAOCG00000014732) #25	igf1rb (ENSAOCG00000014811) #26	LRRC28 (ENSAOCG00000014863) #27	ENSAOCG00000014881	SNAP25 (ENSAOCG00000001031) #28	ENSAOCG00000014924	fam219b (ENSAOCG00000001040)	ENSAOCG00000001819	ENSAOCG00000001047	ENSAOCG00000015025	cct6a (ENSAOCG00000015067)	ENSAOCG00000015123	mrps17 (ENSAOCG00000015138)
Orange clownfish	MODERN SPECIES		si:ch211-260e23.8 (ENSAPEG00000006308)	ENSAPEG00000006320	ENSAPEG00000006333	ENSAPEG00000006377	ENSAPEG00000006403	ENSAPEG00000006448	ENSAPEG00000006468 #14	PDPR (ENSAPEG00000006486) #15	mrps11 (ENSAPEG00000006598) #16	mrpl46 (ENSAPEG00000006612) #17	NTRK3 (ENSAPEG00000006663) #18	ENSAPEG00000006740 #19	ENSAPEG00000006914 ##19	sv2ba (ENSAPEG00000006939) #20	mespba (ENSAPEG00000006955) #21	mespaa (ENSAPEG00000006989) #22	ANPEP (ENSAPEG00000007047) #23	ENSAPEG00000007158	ANPEP (ENSAPEG00000007197) #24	ap3s2 (ENSAPEG00000007481) #25	igf1rb (ENSAPEG00000007516) #26	LRRC28 (ENSAPEG00000007582) #27	SNAP25 (ENSAPEG00000007644) #28	ENSAPEG00000007680	fam219b (ENSAPEG00000007693)	ENSAPEG00000007734	ENSAPEG00000007760	ENSAPEG00000007782	cyp1a (ENSAPEG00000007811)	edc3 (ENSAPEG00000007841)	CSK (ENSAPEG00000007853)
Spiny chromis	MODERN SPECIES	866										ENSAPOG00000004994 #19	ENSAPOG00000005007 ##19	ENSAPOG00000005015 #19	ENSAPOG00000005037 ##19	sv2ba (ENSAPOG00000005314) #20	mespba (ENSAPOG00000005378) #21	mespaa (ENSAPOG00000005398) #22	ANPEP (ENSAPOG00000005421) #23	ANPEP (ENSAPOG00000005536) #24	ap3s2 (ENSAPOG00000005579) #25	igf1rb (ENSAPOG00000005700) #26	ENSAPOG00000005721 #27
Bicolor damselfish	MODERN SPECIES	613										ENSSPAG00000006865 #18	ENSSPAG00000006882 ##19	ENSSPAG00000006914 ##19	ENSSPAG00000006928 ##19	sv2ba (ENSSPAG00000006939) #20	mespba (ENSSPAG00000006971) #21	mespaa (ENSSPAG00000006988) #22	ANPEP (ENSSPAG00000007005) #23	ANPEP (ENSSPAG00000007043) #24	ap3s2 (ENSSPAG00000007064) #25	igf1rb (ENSSPAG00000007089) #26	LRRC28 (ENSSPAG00000007126) #27
Cichlidae	ANCESTRAL SPECIES	11	ENSGT01050000244841.A.a.b.qb.a.b #8	ENSGT00390000009312.b #9	ENSGT00550000074815 #10	ENSGT00390000002211 #11	ENSGT00940000154928.c.a.a #12	ENSGT00940000155500.e #13	ENSGT00950000183149.C.a #14	ENSGT00940000159082 #15	ENSGT00390000016068 #16	ENSGT00390000015400 #17	ENSGT00940000155645.i.b #18	ENSGT00940000154146.b.a.m.b #19	ENSGT00940000154146.b.a.m.a ##19	ENSGT00950000182940.b.a.a.g.b #20	ENSGT00530000063712.a.a.o.b #21	ENSGT00530000063712.a.a.o.a #22	ENSGT00940000154876.a.a.a.b #23	ENSGT00940000154876.a.a.a.a #24	ENSGT00970000193421.C.b #25	ENSGT00940000156682.e.a #26	ENSGT00940000157771 #27	ENSGT00950000182843.a.a.a.b.a.a.a.b #28	ENSGT00390000001424.wb.b	ENSGT00390000000860.a	ENSGT00940000156052.k.a	ENSGT00940000158358.b	ENSGT00930000151452	ENSGT00390000014907.A	ENSGT00950000183037.A.a	ENSGT00390000016435.g.b	ENSGT00940000157431.c.b
Pseudocrenilabrinae	ANCESTRAL SPECIES	13	ENSGT01050000244841.A.a.b.qb.a.b #8	ENSGT00390000009312.b #9	ENSGT00550000074815 #10	ENSGT00390000002211 #11	ENSGT00940000154928.c.a.a #12	ENSGT00940000155500.e #13	ENSGT00950000183149.C.a #14	ENSGT00940000159082 #15	ENSGT00390000016068 #16	ENSGT00390000015400 #17	ENSGT00940000155645.i.b #18	ENSGT00940000154146.b.a.m.b #19	ENSGT00940000154146.b.a.m.a ##19	ENSGT00950000182940.b.a.a.g.b #20	ENSGT00530000063712.a.a.o.b #21	ENSGT00530000063712.a.a.o.a #22	ENSGT00940000154876.a.a.a.b #23	ENSGT00940000154876.a.a.a.a #24	ENSGT00970000193421.C.b #25	ENSGT00940000156682.e.a #26	ENSGT00940000157771 #27	ENSGT00950000182843.a.a.a.b.a.a.a.b #28	ENSGT00390000001424.wb.b	ENSGT00390000000860.a	ENSGT00940000156052.k.a	ENSGT00940000158358.b.o.b	ENSGT00940000158358.b.o.a	ENSGT00930000151452	ENSGT00390000014907.A	ENSGT00950000183037.A.a	ENSGT00390000016435.g.b
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	13	ENSGT01050000244841.A.a.b.qb.a.b #8	ENSGT00390000009312.b #9	ENSGT00550000074815 #10	ENSGT00390000002211 #11	ENSGT00940000154928.c.a.a #12	ENSGT00940000155500.e #13	ENSGT00950000183149.C.a #14	ENSGT00940000159082 #15	ENSGT00390000016068 #16	ENSGT00390000015400 #17	ENSGT00940000155645.i.b #18	ENSGT00940000154146.b.a.m.b #19	ENSGT00940000154146.b.a.m.a ##19	ENSGT00950000182940.b.a.a.g.b #20	ENSGT00530000063712.a.a.o.b #21	ENSGT00530000063712.a.a.o.a #22	ENSGT00940000154876.a.a.a.b #23	ENSGT00940000154876.a.a.a.a #24	ENSGT00970000193421.C.b #25	ENSGT00940000156682.e.a #26	ENSGT00940000157771 #27	ENSGT00950000182843.a.a.a.b.a.a.a.b #28	ENSGT00390000001424.wb.b	ENSGT00390000000860.a	ENSGT00940000156052.k.a	ENSGT00940000158358.b.o.b	ENSGT00930000151452	ENSGT00390000014907.A	ENSGT00950000183037.A.a	ENSGT00390000016435.g.b	ENSGT00940000157431.c.b
Haplochromini	ANCESTRAL SPECIES	11	ENSGT01050000244841.A.a.b.qb.a.b #8	ENSGT00390000009312.b #9	ENSGT00550000074815 #10	ENSGT00390000002211 #11	ENSGT00940000154928.c.a.a #12	ENSGT00940000155500.e #13	ENSGT00950000183149.C.a #14	ENSGT00940000159082 #15	ENSGT00390000016068 #16	ENSGT00390000015400 #17	ENSGT00940000155645.i.b #18	ENSGT00940000154146.b.a.m.b #19	ENSGT00940000154146.b.a.m.a ##19	ENSGT00950000182940.b.a.a.g.b #20	ENSGT00530000063712.a.a.o.b #21	ENSGT00530000063712.a.a.o.a #22	ENSGT00940000154876.a.a.a.b #23	ENSGT00940000154876.a.a.a.a #24	ENSGT00970000193421.C.b #25	ENSGT00940000156682.e.a #26	ENSGT00940000157771 #27	ENSGT00950000182843.a.a.a.b.a.a.a.b #28	ENSGT00390000001424.wb.b	ENSGT00390000000860.a	ENSGT00940000156052.k.a	ENSGT00940000158358.b.o.b	ENSGT00940000158358.b.p	ENSGT00930000151452	ENSGT00390000014907.A	ENSGT00950000183037.A.a	ENSGT00390000016435.g.b
Burton s mouthbrooder	MODERN SPECIES	272	ENSHBUG00000019475 #8	GLO1 (ENSHBUG00000019502) #9	eprs1 (ENSHBUG00000019547) #10	TDP1 (ENSHBUG00000019614) #11	hmbox1a (ENSHBUG00000019655) #12	KIF13B (ENSHBUG00000019693) #13	ENSHBUG00000019705 #14	PDPR (ENSHBUG00000019777) #15	mrps11 (ENSHBUG00000019804) #16	mrpl46 (ENSHBUG00000019818) #17	NTRK3 (ENSHBUG00000019944) #18	ENSHBUG00000019973 #19	ENSHBUG00000020054 ##19	sv2ba (ENSHBUG00000020149) #20	mespba (ENSHBUG00000020166) #21	mespaa (ENSHBUG00000020178) #22	ANPEP (ENSHBUG00000020203) #23	ANPEP (ENSHBUG00000020312) #24	ap3s2 (ENSHBUG00000020370) #25	igf1rb (ENSHBUG00000020501) #26	LRRC28 (ENSHBUG00000020556) #27	SNAP25 (ENSHBUG00000020586) #28	cox5aa (ENSHBUG00000020595)	fam219b (ENSHBUG00000000774)	ENSHBUG00000020662	ENSHBUG00000020756	ENSHBUG00000020784	ENSHBUG00000020795	cyp1a (ENSHBUG00000020804)	edc3 (ENSHBUG00000020817)	CSK (ENSHBUG00000020879)
Haplochromini_A	ANCESTRAL SPECIES	10	ENSGT00390000009312.b #9	ENSGT00550000074815 #10	ENSGT00390000002211 #11	ENSGT00940000154928.c.a.a #12	ENSGT00940000155500.e #13	ENSGT00950000183149.C.a #14	ENSGT00940000159082 #15	ENSGT00390000016068 #16	ENSGT00390000015400 #17	ENSGT00940000155645.i.b #18	ENSGT00940000160789.D.b.b	ENSGT00940000154146.b.a.m.b #19	ENSGT00940000154146.b.a.m.a ##19	ENSGT00950000182940.b.a.a.g.b #20	ENSGT00530000063712.a.a.o.b #21	ENSGT00530000063712.a.a.o.a #22	ENSGT00940000154876.a.a.a.b #23	ENSGT00940000154876.a.a.a.a #24	ENSGT00970000193421.C.b #25	ENSGT00940000156682.e.a #26	ENSGT00940000157771 #27	ENSGT00950000182843.a.a.a.b.a.a.a.b #28	ENSGT00390000001424.wb.b	ENSGT00390000000860.a	ENSGT00940000156052.k.a	ENSGT00940000158358.b.o.b	ENSGT00940000158358.b.o.a	ENSGT00940000158358.b.p	ENSGT00930000151452	ENSGT00390000014907.A	ENSGT00950000183037.A.a
P. nyererei	MODERN SPECIES	320	eprs1 (ENSPNYG00000007931) #10	TDP1 (ENSPNYG00000007981) #11	hmbox1a (ENSPNYG00000008008) #12	KIF13B (ENSPNYG00000008080) #13	ENSPNYG00000008291 #14	ENSPNYG00000008354	PDPR (ENSPNYG00000008380) #15	mrps11 (ENSPNYG00000008428) #16	mrpl46 (ENSPNYG00000008444) #17	NTRK3 (ENSPNYG00000008457) #18	ENSPNYG00000008492	ENSPNYG00000008515 #19	ENSPNYG00000008614 ##19	sv2ba (ENSPNYG00000008670) #20	mespba (ENSPNYG00000008860) #21	mespaa (ENSPNYG00000008885) #22	ANPEP (ENSPNYG00000008900) #23	ANPEP (ENSPNYG00000009033) #24	ap3s2 (ENSPNYG00000009379) #25	igf1rb (ENSPNYG00000009411) #26	LRRC28 (ENSPNYG00000009471) #27	SNAP25 (ENSPNYG00000009503) #28	cox5aa (ENSPNYG00000009523)	fam219b (ENSPNYG00000009543)	ENSPNYG00000009560	ENSPNYG00000009587	ENSPNYG00000009620	ENSPNYG00000009641	cyp1a (ENSPNYG00000009659)	edc3 (ENSPNYG00000009669)	CSK (ENSPNYG00000009686)
Haplochromini_B	ANCESTRAL SPECIES	3	ENSGT00390000009312.b #9	ENSGT00550000074815 #10	ENSGT00390000002211 #11	ENSGT00940000154928.c.a.a #12	ENSGT00940000155500.e #13	ENSGT00950000183149.C.a #14	ENSGT00940000159082 #15	ENSGT00390000016068 #16	ENSGT00390000015400 #17	ENSGT00940000155645.i.b #18	ENSGT00940000160789.D.b.b	ENSGT00940000154146.b.a.m.b #19	ENSGT00940000154146.b.a.m.a ##19	ENSGT00950000182940.b.a.a.g.b #20	ENSGT00530000063712.a.a.o.b #21	ENSGT00530000063712.a.a.o.a #22	ENSGT00940000154876.a.a.a.b #23	ENSGT00940000154876.a.a.a.a #24	ENSGT00970000193421.C.b #25	ENSGT00940000156682.e.a #26	ENSGT00940000157771 #27	ENSGT00950000182843.a.a.a.b.a.a.a.b #28	ENSGT00390000001424.wb.b	ENSGT00390000000860.a	ENSGT00940000156052.k.a	ENSGT00940000158358.b.o.b	ENSGT00940000158358.b.o.a	ENSGT00940000158358.b.p	ENSGT00930000151452	ENSGT00390000014907.A	ENSGT00950000183037.A.a
Eastern happy	MODERN SPECIES		KIF13B (ENSACLG00000020030) #13	ENSACLG00000020014 #14	ENSACLG00000019996	PDPR (ENSACLG00000019932) #15	mrps11 (ENSACLG00000019910) #16	ENSACLG00000019896	mrpl46 (ENSACLG00000019884) #17	ENSACLG00000019876	ENSACLG00000019849	NTRK3 (ENSACLG00000019754) #18	ENSACLG00000019740	ENSACLG00000019721 #19	ENSACLG00000019669 ##19	sv2ba (ENSACLG00000019613) #20	mespba (ENSACLG00000019604) #21	mespaa (ENSACLG00000019590) #22	ANPEP (ENSACLG00000019551) #23	ANPEP (ENSACLG00000019501) #24	ap3s2 (ENSACLG00000019469) #25	igf1rb (ENSACLG00000019368) #26	LRRC28 (ENSACLG00000019309) #27	SNAP25 (ENSACLG00000019266) #28	cox5aa (ENSACLG00000019070)	fam219b (ENSACLG00000019012)	ENSACLG00000018973	ENSACLG00000018954	ENSACLG00000018905	ENSACLG00000018849	ENSACLG00000018843	ENSACLG00000018838	cyp1a (ENSACLG00000018791)
Zebra mbuna	MODERN SPECIES	1091	eprs1 (ENSMZEG00005004950) #10	TDP1 (ENSMZEG00005005003) #11	hmbox1a (ENSMZEG00005005042) #12	KIF13B (ENSMZEG00005005077) #13	ENSMZEG00005005091 #14	ENSMZEG00005005097	PDPR (ENSMZEG00005005109) #15	mrps11 (ENSMZEG00005005157) #16	mrpl46 (ENSMZEG00005005163) #17	NTRK3 (ENSMZEG00005005176) #18	ENSMZEG00005005212	ENSMZEG00005005234 #19	ENSMZEG00005005313 ##19	sv2ba (ENSMZEG00005005328) #20	mespba (ENSMZEG00005005392) #21	mespaa (ENSMZEG00005005402) #22	ANPEP (ENSMZEG00005005427) #23	ANPEP (ENSMZEG00005005456) #24	ap3s2 (ENSMZEG00005005493) #25	igf1rb (ENSMZEG00005005511) #26	LRRC28 (ENSMZEG00005005532) #27	SNAP25 (ENSMZEG00005005539) #28	cox5aa (ENSMZEG00005005551)	fam219b (ENSMZEG00005005569)	ENSMZEG00005005588	ENSMZEG00005005603	ENSMZEG00005005614	ENSMZEG00005005619	ENSMZEG00005005625	ENSMZEG00005005633	cyp1a (ENSMZEG00005005645)
Lyretail cichlid	MODERN SPECIES	290	GLO1 (ENSNBRG00000005981) #9	eprs1 (ENSNBRG00000006007) #10	TDP1 (ENSNBRG00000006120) #11	hmbox1a (ENSNBRG00000006168) #12	KIF13B (ENSNBRG00000006223) #13	ENSNBRG00000006471 #14	ENSNBRG00000006494	PDPR (ENSNBRG00000006515) #15	mrps11 (ENSNBRG00000006581) #16	mrpl46 (ENSNBRG00000006597) #17	NTRK3 (ENSNBRG00000006614) #18	ENSNBRG00000006659 #19	ENSNBRG00000006808 #19	sv2ba (ENSNBRG00000006848) #20	mespba (ENSNBRG00000007019) #21	mespaa (ENSNBRG00000007037) #22	ANPEP (ENSNBRG00000007061) #23	ANPEP (ENSNBRG00000007204) #24	ap3s2 (ENSNBRG00000007647) #25	igf1rb (ENSNBRG00000007674) #26	ENSNBRG00000007743	SNAP25 (ENSNBRG00000007751) #28	cox5aa (ENSNBRG00000007764)	fam219b (ENSNBRG00000007775)	ENSNBRG00000007785	ENSNBRG00000007832	ENSNBRG00000007845	cyp1a (ENSNBRG00000007864)	edc3 (ENSNBRG00000007881)	CSK (ENSNBRG00000007926)	cplx3a (ENSNBRG00000007964)
Nile tilapia	MODERN SPECIES		ENSONIG00000003063 #8	glo1 (ENSONIG00000041239) #9	eprs1 (ENSONIG00000003054) #10	TDP1 (ENSONIG00000003045) #11	hmbox1a (ENSONIG00000003040) #12	KIF13B (ENSONIG00000003026) #13	ENSONIG00000036476 #14	PDPR (ENSONIG00000003019) #15	mrps11 (ENSONIG00000034606) #16	mrpl46 (ENSONIG00000027702) #17	ENSONIG00000032719	NTRK3 (ENSONIG00000003007) #18	ENSONIG00000003000 #19	sv2ba (ENSONIG00000002992) #20	mespba (ENSONIG00000028668) #21	mespaa (ENSONIG00000038969) #22	ANPEP (ENSONIG00000002988) #23	ANPEP (ENSONIG00000002978) #24	AP3S2 (ENSONIG00000035244) #25	igf1rb (ENSONIG00000002961) #26	LRRC28 (ENSONIG00000002957) #27	SNAP25 (ENSONIG00000002954) #28	cox5aa (ENSONIG00000002953)	ENSONIG00000002949	ENSONIG00000042687	ENSONIG00000042922	ENSONIG00000041695	cyp1a (ENSONIG00000041126)	edc3 (ENSONIG00000002932)	CSK (ENSONIG00000002920)	cplx3 (ENSONIG00000029793)
Midas cichlid	MODERN SPECIES	109	eprs1 (ENSACIG00000007907) #10	ENSACIG00000007894	TDP1 (ENSACIG00000007821) #11	hmbox1a (ENSACIG00000007797) #12	ENSACIG00000007745 #13	ENSACIG00000007733 #14	ENSACIG00000007729 #15	PDPR (ENSACIG00000007693) #15	mrps11 (ENSACIG00000007679) #16	mrpl46 (ENSACIG00000007620) #17	NTRK3 (ENSACIG00000007582) #18	ENSACIG00000007493 #19	ENSACIG00000007473 ##19	sv2ba (ENSACIG00000007439) #20	mespba (ENSACIG00000007425) #21	mespaa (ENSACIG00000007411) #22	ANPEP (ENSACIG00000007161) #23	ANPEP (ENSACIG00000007083) #24	ap3s2 (ENSACIG00000007071) #25	ENSACIG00000007062	igf1rb (ENSACIG00000007009) #26	LRRC28 (ENSACIG00000006973) #27	SNAP25 (ENSACIG00000006954) #28	COX5A (ENSACIG00000006936)	fam219b (ENSACIG00000006913)	ENSACIG00000006888	ENSACIG00000006859	ENSACIG00000006828	ENSACIG00000006809	cyp1a (ENSACIG00000005416)	edc3 (ENSACIG00000005330)
Atherinomorphae	ANCESTRAL SPECIES	8	ENSGT00390000009312.b #9	ENSGT00550000074815 #10	ENSGT00390000002211 #11	ENSGT00940000154928.c.a.a #12	ENSGT00940000155500.e #13	ENSGT00950000183149.C.a #14	ENSGT00940000159082 #15	ENSGT00390000016068 #16	ENSGT00390000015400 #17	ENSGT00940000155645.i.b #18	ENSGT00940000154146.b.a.n ##19	ENSGT00940000154146.b.a.m.b #19	ENSGT00940000154146.b.a.m.a ##19	ENSGT00950000182940.b.a.a.g.b #20	ENSGT00530000063712.a.a.o.b #21	ENSGT00530000063712.a.a.o.a #22	ENSGT00940000154876.a.a.a.b #23	ENSGT00940000154876.a.a.a.a #24	ENSGT00970000193421.C.b #25	ENSGT00940000156682.e.a #26	ENSGT00940000157771 #27	ENSGT00950000182843.a.a.a.b.a.a.a.b #28	ENSGT00390000001424.wb.b	ENSGT00390000000860.a	ENSGT00940000156052.k.a	ENSGT00940000158358.b	ENSGT00930000151452	ENSGT00390000014907.A	ENSGT00950000183037.A.a	ENSGT00390000016435.g.b	ENSGT00940000157431.c.b
Cyprinodontiformes	ANCESTRAL SPECIES	9	ENSGT01080000257410.A.f.l	ENSGT01050000244841.A.a.b.qb.a.b #8	ENSGT00390000009312.b #9	ENSGT00550000074815 #10	ENSGT00390000002211 #11	ENSGT00940000154928.c.a.a #12	ENSGT00940000155500.e #13	ENSGT00950000183149.C.a #14	ENSGT00940000159082 #15	ENSGT00390000016068 #16	ENSGT00390000015400 #17	ENSGT00940000155645.i.b #18	ENSGT00940000154146.b.a.n ##19	ENSGT00950000182940.b.a.a.g.b #20	ENSGT00530000063712.a.a.o.b #21	ENSGT00530000063712.a.a.o.a #22	ENSGT00940000154876.a.a.a.b #23	ENSGT00940000154876.a.a.a.a #24	ENSGT00970000193421.C.b #25	ENSGT00940000156682.e.a #26	ENSGT00940000157771 #27	ENSGT00950000182843.a.a.a.b.a.a.a.b #28	ENSGT00390000001424.wb.b	ENSGT00390000000860.a	ENSGT00940000156052.k.a	ENSGT00940000158358.b	ENSGT00930000151452	ENSGT00390000014907.A	ENSGT00950000183037.A.a	ENSGT00390000016435.g.b	ENSGT00940000157431.c.b
Cyprinodontoidei	ANCESTRAL SPECIES	6	ENSGT00940000156738.d	ENSGT00940000153731.a.b.d	ENSGT00940000156932.a	ENSGT00940000154954.nb.b	ENSGT00940000154470.b	ENSGT00390000015600.c.a	ENSGT00940000158534.a.a	ENSGT00940000166058	ENSGT00940000156346.c.a	ENSGT00940000156346.d	ENSGT00510000048144	ENSGT00940000157599.c.b	ENSGT00940000165857.a	ENSGT00940000159833	ENSGT00530000063712.a.a.o.b #21	ENSGT00530000063712.a.a.o.a #22	ENSGT00940000154876.a.a.a.b #23	ENSGT00940000154876.a.a.a.a #24	ENSGT00970000193421.C.b #25	ENSGT00940000156682.e.a #26	ENSGT00940000157771 #27	ENSGT00950000182843.a.a.a.b.a.a.a.b #28	ENSGT00390000001424.wb.b	ENSGT00390000000860.a	ENSGT00940000156052.k.a	ENSGT00940000158358.b	ENSGT00930000151452	ENSGT00390000014907.A	ENSGT00950000183037.A.a	ENSGT00940000157431.c.b	ENSGT00950000182938.b.b.b.b.a
NAME_4	ANCESTRAL SPECIES	135	ENSGT00390000013049	ENSGT00940000156738.d	ENSGT00940000153731.a.b.d	ENSGT00940000156932.a	ENSGT00940000154954.nb.b	ENSGT00940000154470.b	ENSGT00390000015600.c.a	ENSGT00940000158534.a.a	ENSGT00940000166058	ENSGT00940000156346.c.a	ENSGT00510000048144	ENSGT00940000157599.c.b	ENSGT00940000165857.a	ENSGT00940000159833	ENSGT00530000063712.a.a.o.b #21	ENSGT00530000063712.a.a.o.a #22	ENSGT00940000154876.a.a.a.b #23	ENSGT00940000154876.a.a.a.a #24	ENSGT00970000193421.C.b #25	ENSGT00940000156682.e.a #26	ENSGT00940000157771 #27	ENSGT00950000182843.a.a.a.b.a.a.a.b #28	ENSGT00390000001424.wb.b	ENSGT00390000000860.a	ENSGT00940000156052.k.a	ENSGT00940000158358.b	ENSGT00930000151452
Mummichog	MODERN SPECIES	2254				KCTD15 (ENSFHEG00000010118)	CHST8 (ENSFHEG00000010137)	pepd (ENSFHEG00000010186)	THSD4 (ENSFHEG00000010235)	ENSFHEG00000010288	larp6a (ENSFHEG00000010312)	ENSFHEG00000010406	ulk3 (ENSFHEG00000010446)	ENSFHEG00000010464	cplx3a (ENSFHEG00000010469)	cyp1a (ENSFHEG00000010510)	mespba (ENSFHEG00000010516) #21	mespaa (ENSFHEG00000010531) #22	ANPEP (ENSFHEG00000011190) #23	ANPEP (ENSFHEG00000011236) #24	ap3s2 (ENSFHEG00000011261) #25	igf1rb (ENSFHEG00000011372) #26	LRRC28 (ENSFHEG00000011419) #27	SNAP25 (ENSFHEG00000011797) #28	cox5aa (ENSFHEG00000011837)	fam219b (ENSFHEG00000011847)	ENSFHEG00000011856	ENSFHEG00000011869	ENSFHEG00000011875	ENSFHEG00000011882	tmed3 (ENSFHEG00000011912)	si:ch211-107o10.3 (ENSFHEG00000011955)	RASGRF1 (ENSFHEG00000012032)
Sheepshead minnow	MODERN SPECIES	1431										ENSCVAG00000015776	zgc:194679 (ENSCVAG00000015780)	si:ch211-107o10.3 (ENSCVAG00000015798)	tmed3 (ENSCVAG00000015803)	tmed3 (ENSCVAG00000000706)	mespbb (ENSCVAG00000015828) #21	mespaa (ENSCVAG00000015843) #22	ENSCVAG00000015864	ENSCVAG00000015875
Poeciliinae	ANCESTRAL SPECIES	13	ENSGT00940000156738.d	ENSGT00940000153731.a.b.d	ENSGT00940000156932.a	ENSGT00940000154954.nb.b	ENSGT00940000172895	ENSGT00390000015600.c.a	ENSGT00940000158534.a.a	ENSGT00940000166058	ENSGT00940000156346.c.a	ENSGT00940000156346.d	ENSGT00510000048144	ENSGT00940000157599.c.b	ENSGT00940000165857.a	ENSGT00940000159833	ENSGT00530000063712.a.a.o.b #21	ENSGT00530000063712.a.a.o.a #22	ENSGT00940000154876.a.a.a.b #23	ENSGT00940000154876.a.a.a.a #24	ENSGT00970000193421.C.b #25	ENSGT00940000156682.e.a #26	ENSGT00940000157771 #27	ENSGT00950000182843.a.a.a.b.a.a.a.b #28	ENSGT00390000001424.wb.b	ENSGT00390000000860.a	ENSGT00940000156052.k.a	ENSGT00940000158358.b	ENSGT00930000151452	ENSGT00390000014907.A	ENSGT00950000183037.A.a	ENSGT00940000157431.c.b	ENSGT00950000182938.b.b.b.b.a
Poecilia	ANCESTRAL SPECIES	4	ENSGT00940000156738.d	ENSGT00940000153731.a.b.d	ENSGT00940000156932.a	ENSGT00940000154954.nb.b	ENSGT00940000172895	ENSGT00390000015600.c.a	ENSGT00940000158534.a.a	ENSGT00940000166058	ENSGT00940000156346.c.a	ENSGT00940000156346.d	ENSGT00510000048144	ENSGT00940000157599.c.b	ENSGT00940000165857.a	ENSGT00940000159833	ENSGT00530000063712.a.a.o.b #21	ENSGT00530000063712.a.a.o.a #22	ENSGT00940000154876.a.a.a.b #23	ENSGT00940000154876.a.a.a.a #24	ENSGT00970000193421.C.b #25	ENSGT00940000156682.e.a #26	ENSGT00940000157771 #27	ENSGT00950000182843.a.a.a.b.a.a.a.b #28	ENSGT00390000001424.wb.b	ENSGT00390000000860.a	ENSGT00940000156052.k.a	ENSGT00940000158358.b	ENSGT00930000151452	ENSGT00390000014907.A	ENSGT00950000183037.A.a	ENSGT00940000157431.c.b	ENSGT00950000182938.b.b.b.b.a
NAME_6	ANCESTRAL SPECIES	39	ENSGT00390000013049	ENSGT00940000156738.d	ENSGT00940000153731.a.b.d	ENSGT00940000156932.a	ENSGT00940000154954.nb.b	ENSGT00940000172895	ENSGT00390000015600.c.a	ENSGT00940000158534.a.a	ENSGT00940000166058	ENSGT00940000156346.c.a	ENSGT00510000048144	ENSGT00940000157599.c.b	ENSGT00940000165857.a	ENSGT00940000159833	ENSGT00530000063712.a.a.o.b #21	ENSGT00530000063712.a.a.o.a #22	ENSGT00940000154876.a.a.a.b #23	ENSGT00940000154876.a.a.a.a #24	ENSGT00970000193421.C.b #25	ENSGT00940000156682.e.a #26	ENSGT00940000157771 #27	ENSGT00950000182843.a.a.a.b.a.a.a.b #28	ENSGT00390000001424.wb.b	ENSGT00390000000860.a	ENSGT00940000156052.k.a	ENSGT00940000158358.b	ENSGT00930000151452	ENSGT00390000014907.A	ENSGT00950000183037.A.a	ENSGT00940000157431.c.b	ENSGT00950000182938.b.b.b.b.a
Amazon molly	MODERN SPECIES	488	ENSPFOG00000016486	FBXO22 (ENSPFOG00000016466)	TMEM266 (ENSPFOG00000016426)	ISL2 (ENSPFOG00000016399)	pstpip1b (ENSPFOG00000016341)	tspan3b (ENSPFOG00000016313)	sec11a (ENSPFOG00000016298)	ENSPFOG00000016272	cry5 (ENSPFOG00000016246)	FRMD5 (ENSPFOG00000016129)	wdr76 (ENSPFOG00000016083)	RASGRF1 (ENSPFOG00000016006)	si:ch211-107o10.3 (ENSPFOG00000015972)	tmed3 (ENSPFOG00000015967)	mespba (ENSPFOG00000015962) #21	mespaa (ENSPFOG00000015959) #22	ANPEP (ENSPFOG00000015921) #23	ANPEP (ENSPFOG00000015846) #24	ap3s2 (ENSPFOG00000015829) #25	igf1rb (ENSPFOG00000015585) #26	LRRC28 (ENSPFOG00000015513) #27	SNAP25 (ENSPFOG00000015494) #28	COX5A (ENSPFOG00000015470)	fam219b (ENSPFOG00000015439)	ENSPFOG00000015407	ENSPFOG00000015380	ENSPFOG00000015375	ENSPFOG00000015326	cyp1a (ENSPFOG00000015284)	CSK (ENSPFOG00000015195)	CSK (ENSPFOG00000015095)
Guppy	MODERN SPECIES	455	ENSPREG00000009419	tspan15 (ENSPREG00000009383)	tacr2 (ENSPREG00000009343)	ENSPREG00000009331	ENSPREG00000009311	sec11a (ENSPREG00000009290)	ENSPREG00000009259	cry5 (ENSPREG00000009207)	ENSPREG00000009169	ENSPREG00000009156	wdr76 (ENSPREG00000009123)	RASGRF1 (ENSPREG00000009047)	si:ch211-107o10.3 (ENSPREG00000009017)	tmed3 (ENSPREG00000009006)	tmed3 (ENSPREG00000008984)	mespaa (ENSPREG00000008972) #22	ANPEP (ENSPREG00000008931) #23	ANPEP (ENSPREG00000008721) #24	ap3s2 (ENSPREG00000008669) #25	igf1rb (ENSPREG00000008541) #26	LRRC28 (ENSPREG00000008444) #27	SNAP25 (ENSPREG00000008416) #28	COX5A (ENSPREG00000008401)	fam219b (ENSPREG00000008392)	ENSPREG00000008368	ENSPREG00000008336	ENSPREG00000008321	ENSPREG00000008308	cyp1a (ENSPREG00000008287)	CSK (ENSPREG00000008273)	cplx3a (ENSPREG00000008261)
Aplocheiloidei	ANCESTRAL SPECIES	40	ENSGT00940000157540.B	ENSGT01080000257410.A.f.l	ENSGT01050000244841.A.a.b.qb.a.b #8	ENSGT00390000009312.b #9	ENSGT00550000074815 #10	ENSGT00390000002211 #11	ENSGT00940000154928.c.a.a #12	ENSGT00940000155500.e #13	ENSGT00950000183149.C.a #14	ENSGT00940000159082 #15	ENSGT00390000016068 #16	ENSGT00390000015400 #17	ENSGT00940000155645.i.b #18	ENSGT00940000154146.b.a.m.a ##19	ENSGT00950000182940.b.a.a.g.b #20	ENSGT00530000063712.a.a.o.a #22	ENSGT00940000154876.a.a.a.b #23	ENSGT00940000154876.a.a.a.a.f #24	ENSGT00970000193421.C.b #25	ENSGT00940000156682.e.a #26	ENSGT00940000157771 #27	ENSGT00950000182843.a.a.a.b.a.a.a.b #28	ENSGT00390000001424.wb.b	ENSGT00390000000860.a	ENSGT00940000156052.k.a	ENSGT00940000158358.b	ENSGT00930000151452	ENSGT00390000014907.A	ENSGT00950000183037.A.a	ENSGT00390000016435.g.b	ENSGT00940000157431.c.b
Mangrove rivulus	MODERN SPECIES	114													ENSKMAG00000002769 ##19	sv2ba (ENSKMAG00000002732) #20	ENSKMAG00000002714 ##22	mespaa (ENSKMAG00000002708) #22	ANPEP (ENSKMAG00000002685) #23	ANPEP (ENSKMAG00000002677) #24	ap3s2 (ENSKMAG00000002638) #25	igf1rb (ENSKMAG00000002516) #26	LRRC28 (ENSKMAG00000002452) #27	SNAP25 (ENSKMAG00000002256) #28	cox5aa (ENSKMAG00000002227)	fam219b (ENSKMAG00000002212)	ENSKMAG00000002197	ENSKMAG00000002176	ENSKMAG00000002160	ENSKMAG00000002117	cyp1a (ENSKMAG00000002016)	edc3 (ENSKMAG00000001987)	CSK (ENSKMAG00000001906)
Oryzias	ANCESTRAL SPECIES	13	ENSGT00950000183037.A.a	ENSGT00390000014907.A	ENSGT00930000151452	ENSGT00390000002211 #11	ENSGT00940000154928.c.a.a #12	ENSGT00940000155500.e #13	ENSGT00950000183149.C.a #14	ENSGT00940000159082 #15	ENSGT00390000016068 #16	ENSGT00390000015400 #17	ENSGT00940000155645.i.b #18	ENSGT00940000154146.b.a.m.b #19	ENSGT00940000154146.b.a.m.a ##19	ENSGT00950000182940.b.a.a.g.b #20	ENSGT00530000063712.a.a.o.b #21	ENSGT00530000063712.a.a.o.a #22	ENSGT00940000154876.a.a.a.b #23	ENSGT00940000154876.a.a.a.a #24	ENSGT00970000193421.C.b #25	ENSGT00940000156682.e.a #26	ENSGT00940000157771 #27	ENSGT00950000182843.a.a.a.b.a.a.a.b #28	ENSGT00390000001424.wb.b	ENSGT00390000000860.a	ENSGT00940000156052.k.a	ENSGT00940000158358.b	ENSGT00550000074815 #10	ENSGT00390000009312.b #9	ENSGT01050000244841.A.a.b.qb.a.b #8	ENSGT00940000161051.a.b	ENSGT01080000257410.A.f.l
Oryzias_b	ANCESTRAL SPECIES	5	ENSGT00950000183037.A.a	ENSGT00390000014907.A	ENSGT00930000151452	ENSGT00390000002211 #11	ENSGT00940000154928.c.a.a #12	ENSGT00940000155500.e #13	ENSGT00950000183149.C.a #14	ENSGT00940000159082 #15	ENSGT00390000016068 #16	ENSGT00390000015400 #17	ENSGT00940000155645.i.b #18	ENSGT00940000154146.b.a.m.b #19	ENSGT00940000154146.b.a.m.a ##19	ENSGT00950000182940.b.a.a.g.b #20	ENSGT00530000063712.a.a.o.b #21	ENSGT00530000063712.a.a.o.a #22	ENSGT00940000154876.a.a.a.b #23	ENSGT00940000154876.a.a.a.a #24	ENSGT00970000193421.C.b #25	ENSGT00940000156682.e.a #26	ENSGT00940000157771 #27	ENSGT00950000182843.a.a.a.b.a.a.a.b #28	ENSGT00390000001424.wb.b	ENSGT00390000000860.a	ENSGT00940000156052.k.a	ENSGT00940000158358.b	ENSGT00550000074815 #10	ENSGT00390000009312.b #9	ENSGT01050000244841.A.a.b.qb.a.b #8	ENSGT00940000161051.a.b.t.a.b.b	ENSGT00940000161051.a.b.t.a.b.a
Indian medaka	MODERN SPECIES	26	cyp1a (ENSOMEG00000017398)	ENSOMEG00000017458	ENSOMEG00000017486	TDP1 (ENSOMEG00000017556) #11	hmbox1a (ENSOMEG00000017612) #12	KIF13B (ENSOMEG00000017789) #13	ENSOMEG00000017846 #14	PDPR (ENSOMEG00000017900) #15	mrps11 (ENSOMEG00000017915) #16	mrpl46 (ENSOMEG00000017928) #17	NTRK3 (ENSOMEG00000018088) #18	ENSOMEG00000018188 #19	ENSOMEG00000018205 ##19	sv2ba (ENSOMEG00000018247) #20	mespba (ENSOMEG00000018258) #21	mespaa (ENSOMEG00000018266) #22	ENSOMEG00000018285 #23	ANPEP (ENSOMEG00000018403) #23	ANPEP (ENSOMEG00000018311) #24	ap3s2 (ENSOMEG00000018433) #25	igf1rb (ENSOMEG00000018503) #26	LRRC28 (ENSOMEG00000018559) #27	SNAP25 (ENSOMEG00000018629) #28	cox5aa (ENSOMEG00000018663)	fam219b (ENSOMEG00000018688)	ENSOMEG00000018729	ENSOMEG00000018829	eprs1 (ENSOMEG00000018971) #10	GLO1 (ENSOMEG00000019001) #9	ENSOMEG00000019022 #8	ENSOMEG00000019040
Javanese ricefish	MODERN SPECIES	17	ENSOJAG00000007796	ENSOJAG00000007809	ENSOJAG00000007878 #11	hmbox1a (ENSOJAG00000008848) #12	KIF13B (ENSOJAG00000008918) #13	ENSOJAG00000011281 #14	PDPR (ENSOJAG00000011318) #15	mrps11 (ENSOJAG00000011671) #16	mrpl46 (ENSOJAG00000011679) #17	ENSOJAG00000011688	NTRK3 (ENSOJAG00000011726) #18	ENSOJAG00000011913	ENSOJAG00000011927 ##19	sv2ba (ENSOJAG00000012014) #20	mespba (ENSOJAG00000012066) #21	mespaa (ENSOJAG00000012083) #22	snrpa1 (ENSOJAG00000012259)	ANPEP (ENSOJAG00000012314) #24	ap3s2 (ENSOJAG00000012478) #25	igf1rb (ENSOJAG00000012573) #26	LRRC28 (ENSOJAG00000014937) #27	SNAP25 (ENSOJAG00000014961) #28	cox5aa (ENSOJAG00000014985)	fam219b (ENSOJAG00000015091)	ENSOJAG00000015099	ENSOJAG00000015113	ENSOJAG00000015142	eprs1 (ENSOJAG00000015175) #10	GLO1 (ENSOJAG00000017126) #9	gnrhr2 (ENSOJAG00000017157) #8	ENSOJAG00000017174
Oryzias_a	ANCESTRAL SPECIES	6	ENSGT00950000183037.A.a	ENSGT00390000014907.A	ENSGT00930000151452	ENSGT00390000002211 #11	ENSGT00940000154928.c.a.a #12	ENSGT00940000155500.e #13	ENSGT00950000183149.C.a #14	ENSGT00940000159082 #15	ENSGT00390000016068 #16	ENSGT00390000015400 #17	ENSGT00940000155645.i.b #18	ENSGT00940000154146.b.a.m.b #19	ENSGT00940000154146.b.a.m.a ##19	ENSGT00950000182940.b.a.a.g.b #20	ENSGT00530000063712.a.a.o.b #21	ENSGT00530000063712.a.a.o.a #22	ENSGT00940000154876.a.a.a.b #23	ENSGT00940000154876.a.a.a.a #24	ENSGT00970000193421.C.b #25	ENSGT00940000156682.e.a #26	ENSGT00940000157771 #27	ENSGT00950000182843.a.a.a.b.a.a.a.b #28	ENSGT00390000001424.wb.b	ENSGT00390000000860.a	ENSGT00940000156052.k.a	ENSGT00940000158358.b	ENSGT00550000074815 #10	ENSGT00390000009312.b #9	ENSGT01050000244841.A.a.b.qb.a.b #8	ENSGT01080000257410.A.f.l	ENSGT00940000157540.B
Japanese Medaka HdrR	MODERN SPECIES	17	cyp1a (ENSORLG00000014421)	ENSORLG00000028447	ENSORLG00000028316	TDP1 (ENSORLG00000014455) #11	hmbox1a (ENSORLG00000014467) #12	ENSORLG00000014507 #13	ENSORLG00000014513 #14	PDPR (ENSORLG00000014564) #15	mrps11 (ENSORLG00000014573) #16	mrpl46 (ENSORLG00000014585) #17	NTRK3 (ENSORLG00000014606) #18	ENSORLG00000014616 ##19	ENSORLG00000028055 ##19	sv2ba (ENSORLG00000014648) #20	mespba (ENSORLG00000014656) #21	mespaa (ENSORLG00000014659) #22	ENSORLG00000029229 #23	ENSORLG00000014691 #24	ap3s2 (ENSORLG00000014699) #25	igf1rb (ENSORLG00000014732) #26	LRRC28 (ENSORLG00000014753) #27	ENSORLG00000024677 #28	COX5A (ENSORLG00000014758)	fam219b (ENSORLG00000028616)	ENSORLG00000014769	ENSORLG00000014777	ENSORLG00000025005	eprs1 (ENSORLG00000014819) #10	GLO1 (ENSORLG00000014841) #9	gnrh-r1 (ENSORLG00000019213) #8	ENSORLG00000014853
Chinese medaka	MODERN SPECIES	901	cyp1a (ENSOSIG00000022847)	ENSOSIG00000022845	TDP1 (ENSOSIG00000022738) #11	hmbox1a (ENSOSIG00000022716) #12	KIF13B (ENSOSIG00000022594) #13	ENSOSIG00000022560 #14	PDPR (ENSOSIG00000022555) #15	mrps11 (ENSOSIG00000022548) #16	mrpl46 (ENSOSIG00000022545) #17	ENSOSIG00000022544	NTRK3 (ENSOSIG00000022542) #18	ENSOSIG00000022540 #19	ENSOSIG00000022538 #19	sv2ba (ENSOSIG00000022513) #20	mespba (ENSOSIG00000022483) #21	mespaa (ENSOSIG00000022481) #22	ANPEP (ENSOSIG00000022464) #24	ap3s2 (ENSOSIG00000022438) #25	ENSOSIG00000022435	igf1rb (ENSOSIG00000020109) #26	LRRC28 (ENSOSIG00000019896) #27	SNAP25 (ENSOSIG00000019892) #28	cox5aa (ENSOSIG00000019853)	fam219b (ENSOSIG00000019845)	ENSOSIG00000019840
Pinecone sodierfish	MODERN SPECIES	17	zdhhc7 (ENSMMDG00005002851)	RGS9BP (ENSMMDG00005002900)	nudt19 (ENSMMDG00005002903)	SLC7A9 (ENSMMDG00005002915)	PDPR (ENSMMDG00005003044) #15	mrps11 (ENSMMDG00005003796) #16	mrpl46 (ENSMMDG00005003798) #17	ENSMMDG00005003799	NTRK3 (ENSMMDG00005003805) #18	ENSMMDG00005003808 #19	ENSMMDG00005003815 #19	ENSMMDG00005003820 #19	ENSMMDG00005003827 #19	sv2ba (ENSMMDG00005003854) #20	mespba (ENSMMDG00005004019) #21	mespaa (ENSMMDG00005004023) #22	ANPEP (ENSMMDG00005004100) #23	ANPEP (ENSMMDG00005005190) #24	ap3s2 (ENSMMDG00005005197) #25	igf1rb (ENSMMDG00005005409) #26	LRRC28 (ENSMMDG00005014931) #27	SNAP25 (ENSMMDG00005014934) #28	ENSMMDG00005014935	fam219b (ENSMMDG00005014937)	ENSMMDG00005014938	ENSMMDG00005014943	ENSMMDG00005014945	cyp1a (ENSMMDG00005014947)	CSK (ENSMMDG00005014956)	cplx3a (ENSMMDG00005015444)	ENSMMDG00005015447
Cod	MODERN SPECIES	5	ENSGMOG00000027085	ENSGMOG00000033168	ace2 (ENSGMOG00000008237)	ENSGMOG00000008230	ENSGMOG00000008222	cdkl5 (ENSGMOG00000008216)	ENSGMOG00000008214	ppef1 (ENSGMOG00000008211)	PHKA2 (ENSGMOG00000008203)	ENSGMOG00000015297	ENSGMOG00000007572	ENSGMOG00000004099 #19	ENSGMOG00000025824 #19	ENSGMOG00000027518 #20	mespba (ENSGMOG00000022758) #21	mespab (ENSGMOG00000034929) #22	ENSGMOG00000000197 #23	ENSGMOG00000026325 #24	ENSGMOG00000024300 #25	igf1rb (ENSGMOG00000000181) #26	ENSGMOG00000000175 #27	ENSGMOG00000024090	ENSGMOG00000018626	ENSGMOG00000014531	ENSGMOG00000000886	ENSGMOG00000000879 #8	zgc:165481 (ENSGMOG00000031211)	cep89 (ENSGMOG00000034662)	rhpn2 (ENSGMOG00000013243)	ENSGMOG00000025742	slc7a10a (ENSGMOG00000026425)
Protacanthopterygii	ANCESTRAL SPECIES	160	ENSGT00390000009995	ENSGT01050000244841.A.a.b.qb.a #8	ENSGT01080000257410.A.f.l	ENSGT00940000157540.B	ENSGT00940000156291.e	ENSGT00940000156205.g	ENSGT00940000157771 #27	ENSGT00940000156682.e.a #26	ENSGT00970000193421.C.b #25	ENSGT00940000154876.a.a.a.a #24	ENSGT00940000154876.a.a.a.b #23	ENSGT00950000182940.b.a.a.g.b #20	ENSGT00940000154146.b.a #19	ENSGT00950000182940.b.a.a.g.a ##20	ENSGT00530000063712.a.a.o.b #21	ENSGT00530000063712.a.a.o.a #22	ENSGT00940000154876.a.b.b ##24	ENSGT00940000154876.a.b.a ##24	ENSGT00940000153377.B
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	196																ENSGT00530000063712.a.a.o.a.g #22	ENSGT00940000154876.a.b.b ##24	ENSGT00940000154876.a.b.a ##24	ENSGT00940000153377.B	ENSGT00940000156574.C.o.a	ENSGT00390000009899.a.d.n	ENSGT00940000167440	ENSGT00390000009663.l	ENSGT00940000165046.a.f	ENSGT00940000161379	ENSGT00940000158636.k.a	ENSGT00940000158792.k	ENSGT00530000063868.b.j.a.b	ENSGT01100000263537.b.a.b.f	ENSGT00390000013052.m	ENSGT00810000125439.B.c.b.c.a
Huchen	MODERN SPECIES	1341																ENSHHUG00000024581 #22	ANPEP (ENSHHUG00000024524) ##24	anpepb.1 (ENSHHUG00000024366) ##24	ENSHHUG00000024359	lrp5 (ENSHHUG00000023527)	ppp6r3 (ENSHHUG00000023465)	ENSHHUG00000023443	gal (ENSHHUG00000023248)	ENSHHUG00000023238	ENSHHUG00000023228	ADAMTS20 (ENSHHUG00000022817)
Salmoninae_a	ANCESTRAL SPECIES	13	ENSGT00390000004913	ENSGT00550000074924.a	ENSGT00940000156978.mb	ENSGT00940000155581.B.c.a	ENSGT00390000003374	ENSGT00940000158707.a.b.m	ENSGT00520000055637.A.b.w	ENSGT00940000154158.b	ENSGT00390000005224.o	ENSGT00940000155645.j.e ##18	ENSGT00940000160936	ENSGT00950000182983.B.b.f	ENSGT00940000154146.b.a.e.a #19	ENSGT00950000182940.b.a.a.g.a.c ##20	ENSGT00530000063712.a.a.o.b.f #21	ENSGT00530000063712.a.a.o.a.g #22	ENSGT00940000154876.a.b.b ##24	ENSGT00940000154876.a.b.a ##24	ENSGT00940000153377.B.a	ENSGT00940000156574.C.o.a	ENSGT00390000009899.a.d.n	ENSGT00940000167440	ENSGT00390000009663.l	ENSGT00940000165046.a.f	ENSGT00940000161379	ENSGT00940000158636.k.a	ENSGT00940000158792.k	ENSGT00530000063868.b.j.a.b	ENSGT01100000263537.b.a.b.f	ENSGT00390000013052.m	ENSGT00810000125439.B.c.b.c.a
Salmo	ANCESTRAL SPECIES	36	ENSGT00390000004913	ENSGT00550000074924.a	ENSGT00940000156978.mb	ENSGT00940000155581.B.c.a	ENSGT00390000003374	ENSGT00940000158707.a.b.m	ENSGT00520000055637.A.b.w	ENSGT00940000154158.b	ENSGT00390000005224.o	ENSGT00940000155645.j.e ##18	ENSGT00940000160936	ENSGT00950000182983.B.b.f	ENSGT00940000154146.b.a.e.a #19	ENSGT00950000182940.b.a.a.g.a.c ##20	ENSGT00530000063712.a.a.o.b.f #21	ENSGT00530000063712.a.a.o.a.g #22	ENSGT00940000154876.a.b.b ##24	ENSGT00940000154876.a.b.a ##24	ENSGT00940000153377.B.a	ENSGT00940000156574.C.o.a	ENSGT00390000009899.a.d.n	ENSGT00940000167440	ENSGT00390000009663.l	ENSGT00940000165046.a.f	ENSGT00940000161379	ENSGT00940000158636.k.a	ENSGT00940000158792.k	ENSGT00530000063868.b.j.a.b	ENSGT00390000013052.m	ENSGT00810000125439.B.c.b.c.a	ENSGT00950000183093.A.a.c
Atlantic salmon	MODERN SPECIES	1	ENSSSAG00000106121	ca5a (ENSSSAG00000093356)	slc7a5 (ENSSSAG00000071975)	klhdc4 (ENSSSAG00000071789)	jph3 (ENSSSAG00000071780)	ENSSSAG00000083835	map1lc3b (ENSSSAG00000083038)	det1 (ENSSSAG00000071755)	ENSSSAG00000086249	ntrk3a (ENSSSAG00000071080) ##18	ENSSSAG00000070971	KLHL25 (ENSSSAG00000070961)	ENSSSAG00000102068 #19	ENSSSAG00000070055 ##20	ENSSSAG00000070036 #21	ENSSSAG00000070035 #22	ENSSSAG00000109796 ##24	ENSSSAG00000091550	anpepb.1 (ENSSSAG00000064984) ##24	ENSSSAG00000120845	lrp5 (ENSSSAG00000064425)	saps3 (ENSSSAG00000063838)	ENSSSAG00000063794	gal (ENSSSAG00000090276)	zgc:110339 (ENSSSAG00000063764)	ENSSSAG00000063755	ENSSSAG00000098032	ENSSSAG00000093384	ADAMTS20 (ENSSSAG00000062769)	irak4 (ENSSSAG00000062519)	twf1a (ENSSSAG00000062334)
River trout	MODERN SPECIES	37	ca5a (ENSSTUG00000013529)	slc7a5 (ENSSTUG00000013556)	klhdc4 (ENSSTUG00000014390)	jph3b (ENSSTUG00000014436)	ZCCHC14 (ENSSTUG00000014465)	map1lc3b (ENSSTUG00000014471)	det1 (ENSSTUG00000014494)	ENSSTUG00000014510	ntrk3a (ENSSTUG00000014517) ##18	ENSSTUG00000014724	AGBL1 (ENSSTUG00000014733)	KLHL25 (ENSSTUG00000014802)	ENSSTUG00000014808 #19	SV2B (ENSSTUG00000014879) ##20	ENSSTUG00000014987 #21	ENSSTUG00000015001 #22	anpepb.1 (ENSSTUG00000015042) ##24	ENSSTUG00000015936	lrp5 (ENSSTUG00000016009)	ppp6r3 (ENSSTUG00000018786)	ENSSTUG00000019388	gal (ENSSTUG00000019424)	zgc:110339 (ENSSTUG00000019432)	ENSSTUG00000019456	ADAMTS20 (ENSSTUG00000019540)	ENSSTUG00000020586	irak4 (ENSSTUG00000020599)	twf1a (ENSSTUG00000020713)	TMEM117 (ENSSTUG00000020751)	NELL2 (ENSSTUG00000020827)	ENSSTUG00000021860
Oncorhynchus	ANCESTRAL SPECIES	10	ENSGT00390000004913	ENSGT00940000164507.b	ENSGT00940000156978.mb	ENSGT00940000155581.B.c.a	ENSGT00390000003374	ENSGT00940000158707.a.b.m	ENSGT00520000055637.A.b.w	ENSGT00940000154158.b	ENSGT00390000005224.o	ENSGT00940000155645.j.e ##18	ENSGT00940000160936	ENSGT00950000182983.B.b.f	ENSGT00940000154146.b.a.e.a #19	ENSGT00950000182940.b.a.a.g.a.c ##20	ENSGT00530000063712.a.a.o.b.f #21	ENSGT00530000063712.a.a.o.a.g #22	ENSGT00940000154876.a.b.b ##24	ENSGT00940000154876.a.b.a ##24	ENSGT00940000153377.B.a	ENSGT00940000156574.C.o.a	ENSGT00390000009899.a.d.n	ENSGT00940000167440	ENSGT00390000009663.l	ENSGT00940000165046.a.f	ENSGT00940000161379	ENSGT00940000158636.k.a	ENSGT00940000158792.k	ENSGT00530000063868.b.j.a.b	ENSGT01100000263537.b.a.b.f.a.b	ENSGT00390000013052.m	ENSGT00810000125439.B.c.b.c.a
Rainbow trout	MODERN SPECIES	11	klhdc4 (ENSOMYG00000039831)	jph3b (ENSOMYG00000039765)	ENSOMYG00000039751	map1lc3b (ENSOMYG00000068549)	det1 (ENSOMYG00000039690)	ENSOMYG00000063121	ntrk3a (ENSOMYG00000039502) ##18	ENSOMYG00000039327	ENSOMYG00000052587	KLHL25 (ENSOMYG00000039245)	ENSOMYG00000072284 #19	ENSOMYG00000039237 #19	ENSOMYG00000074182	ENSOMYG00000039201 ##20	mespbb (ENSOMYG00000039175) #21	ENSOMYG00000039168 #22	ENSOMYG00000038037 ##24	anpepb.1 (ENSOMYG00000037287) ##24	ENSOMYG00000037142	lrp5 (ENSOMYG00000033413)	ppp6r3 (ENSOMYG00000031697)	ENSOMYG00000031358	ENSOMYG00000070518	gal (ENSOMYG00000031338)	zgc:110339 (ENSOMYG00000031331)	ENSOMYG00000031321	ADAMTS20 (ENSOMYG00000031161)	irak4 (ENSOMYG00000030965)	twf1a (ENSOMYG00000030886)	ENSOMYG00000030862	TMEM117 (ENSOMYG00000030850)
Oncorhynchus_a	ANCESTRAL SPECIES	5	ENSGT00940000164507.b	ENSGT00940000156978.mb	ENSGT00940000155581.B.c.a	ENSGT00940000155581.C	ENSGT00390000003374	ENSGT00940000158707.a.b.m	ENSGT00520000055637.A.b.w	ENSGT00940000154158.b	ENSGT00390000005224.o	ENSGT00940000155645.j.e ##18	ENSGT00940000160936	ENSGT00950000182983.B.b.f	ENSGT00940000154146.b.a.e.a #19	ENSGT00950000182940.b.a.a.g.a.c ##20	ENSGT00530000063712.a.a.o.b.f #21	ENSGT00530000063712.a.a.o.a.g #22	ENSGT00940000154876.a.b.b ##24	ENSGT00940000154876.a.b.a ##24	ENSGT00940000153377.B.a	ENSGT00940000156574.C.o.a	ENSGT00390000009899.a.d.n	ENSGT00940000167440	ENSGT00390000009663.l	ENSGT00940000163363	ENSGT00940000161379	ENSGT00940000158636.k.a	ENSGT01010000229777	ENSGT00940000158792.k	ENSGT00530000063868.b.j.a.b	ENSGT01100000263537.b.a.b.f.a.b	ENSGT00390000013052.m
Chinook salmon	MODERN SPECIES	10	ca5a (ENSOTSG00005033420)	slc7a5 (ENSOTSG00005031711)	klhdc4 (ENSOTSG00005031697)	jph3b (ENSOTSG00005031694)	ENSOTSG00005031692	ENSOTSG00005031690	map1lc3b (ENSOTSG00005031689)	det1 (ENSOTSG00005031688)	ntrk3a (ENSOTSG00005031685) ##18	AGBL1 (ENSOTSG00005031683)	KLHL25 (ENSOTSG00005031682)	ENSOTSG00005031679 #19	ENSOTSG00005031678 #19	SV2B (ENSOTSG00005031674) ##20	ENSOTSG00005031671 #21	ENSOTSG00005031670 #22	ENSOTSG00005031404 ##24	anpepb.1 (ENSOTSG00005030586) ##24	ENSOTSG00005030572	lrp5 (ENSOTSG00005027040)	ppp6r3 (ENSOTSG00005026234)	ENSOTSG00005026223	gal (ENSOTSG00005026218)	ENSOTSG00005026216	ENSOTSG00005026214	ADAMTS20 (ENSOTSG00005025519)	ENSOTSG00005025493	irak4 (ENSOTSG00005025491)	twf1a (ENSOTSG00005025490)	ENSOTSG00005025489	TMEM117 (ENSOTSG00005025488)
Coho salmon	MODERN SPECIES	14	ENSOKIG00005046422	ca5a (ENSOKIG00005046377)	SLC7A5 (ENSOKIG00005045727)	klhdc4 (ENSOKIG00005045647)	jph3b (ENSOKIG00005045638)	ZCCHC14 (ENSOKIG00005045625)	map1lc3b (ENSOKIG00005045603)	det1 (ENSOKIG00005045588)	ENSOKIG00005045583	ntrk3a (ENSOKIG00005045529) ##18	AGBL1 (ENSOKIG00005045512)	KLHL25 (ENSOKIG00005045508)	ENSOKIG00005045482 #19	ENSOKIG00005045412 ##20	ENSOKIG00005045387 #21	ENSOKIG00005045363 #22	ANPEP (ENSOKIG00005045301) ##24	anpepb.1 (ENSOKIG00005044079) ##24	ENSOKIG00005043979	lrp5 (ENSOKIG00005038566)	ppp6r3 (ENSOKIG00005037193)	ENSOKIG00005037107	gal (ENSOKIG00005037096)	ENSOKIG00005037033	ENSOKIG00005036974	ADAMTS20 (ENSOKIG00005036052)	ENSOKIG00005035940	irak4 (ENSOKIG00005035877)	twf1a (ENSOKIG00005035862)	ENSOKIG00005035842	TMEM117 (ENSOKIG00005035753)
Salmoninae	ANCESTRAL SPECIES	578														ENSGT00950000182940.b.a.a.g.a.d ##20	ENSGT00530000063712.a.a.o.b.e #21	ENSGT00530000063712.a.a.o.a.h #22	ENSGT00940000154876.a.a.b ##24	ENSGT00940000170837.a	ENSGT00940000156574.C.o.b	ENSGT00390000009899.a.d.m	ENSGT00390000009663.k	ENSGT00940000165046.a.e	ENSGT00940000158636.k.b	ENSGT00940000168978	ENSGT01000000220683	ENSGT00940000158792.l	ENSGT00530000063868.b.j.a.a	ENSGT01030000234621.E	ENSGT00390000013052.n	ENSGT00810000125439.B.c.b.c.b
Salmoninae_a	ANCESTRAL SPECIES	1	ENSGT00940000157499.h	ENSGT00940000160052.j	ENSGT00550000074924.b	ENSGT00940000156978.lb	ENSGT00940000155581.B.c.b	ENSGT00950000183052.b.c.b.a.e.b.b	ENSGT00940000158707.a.b.n	ENSGT00520000055637.A.b.x	ENSGT00940000154158.a	ENSGT00390000005224.p	ENSGT00940000155645.j.f ##18	ENSGT00950000182983.B.b.e	ENSGT00940000154146.b.a.e.b #19	ENSGT00950000182940.b.a.a.g.a.d ##20	ENSGT00530000063712.a.a.o.b.e #21	ENSGT00530000063712.a.a.o.a.h #22	ENSGT00940000153377.B.b	ENSGT00940000156574.C.o.b	ENSGT00390000009899.a.d.m	ENSGT00390000009663.k	ENSGT00940000165046.a.e	ENSGT00940000158636.k.b	ENSGT00940000168978	ENSGT01000000220683	ENSGT00940000158792.l	ENSGT00530000063868.b.j.a.a	ENSGT01030000234621.E	ENSGT00390000013052.n	ENSGT00810000125439.B.c.b.c.b	ENSGT00940000156523.b.c.d	ENSGT00940000159142.v
Salmo	ANCESTRAL SPECIES	9	ENSGT00940000157499.h	ENSGT00940000160052.j	ENSGT00550000074924.b	ENSGT00940000156978.lb	ENSGT00940000155581.B.c.b	ENSGT00950000183052.b.c.b.a.e.b.b	ENSGT00940000158707.a.b.n	ENSGT00520000055637.A.b.x	ENSGT00940000154158.a	ENSGT00390000005224.p	ENSGT00940000155645.j.f ##18	ENSGT00950000182983.B.b.e	ENSGT00940000154146.b.a.e.b #19	ENSGT00950000182940.b.a.a.g.a.d ##20	ENSGT00530000063712.a.a.o.b.e #21	ENSGT00530000063712.a.a.o.a.h #22	ENSGT00940000153377.B.b	ENSGT00940000156574.C.o.b	ENSGT00390000009899.a.d.m	ENSGT00390000009663.k	ENSGT00940000165046.a.e	ENSGT00940000158636.k.b	ENSGT00940000158792.l	ENSGT00530000063868.b.j.a.a	ENSGT01030000234621.E	ENSGT00390000013052.n	ENSGT00810000125439.B.c.b.c.b	ENSGT00940000156523.b.c.d	ENSGT00940000159142.v	ENSGT00940000157113.c.a	ENSGT00940000161332.j
Atlantic salmon	MODERN SPECIES	7	ENSSSAG00000051789	slc7a5 (ENSSSAG00000051886)	ENSSSAG00000054559	jph3b (ENSSSAG00000054563)	ZCCHC14 (ENSSSAG00000054569)	map1lc3b (ENSSSAG00000054579)	DET1 (ENSSSAG00000054657)	ntrk3a (ENSSSAG00000054707) ##18	ENSSSAG00000102723	ENSSSAG00000112925	ENSSSAG00000056667	ENSSSAG00000056674 #19	ENSSSAG00000114902 #19	ENSSSAG00000056712 ##20	ENSSSAG00000056732 #21	ENSSSAG00000056736 #22	ENSSSAG00000056741	lrp5 (ENSSSAG00000056819)	ppp6r3 (ENSSSAG00000059393)	zgc:110339 (ENSSSAG00000063431)	ADAMTS20 (ENSSSAG00000063455)	ENSSSAG00000107042	irak4 (ENSSSAG00000063712)	twf1 (ENSSSAG00000063743)	ENSSSAG00000088184	TMEM117 (ENSSSAG00000062151)	NELL2 (ENSSSAG00000063844)	ENSSSAG00000064939	bsg (ENSSSAG00000094020)	ENSSSAG00000065197	fstl3 (ENSSSAG00000097227)
River trout	MODERN SPECIES	8	ca5a (ENSSTUG00000005945)	slc7a5 (ENSSTUG00000005369)	ENSSTUG00000005341	jph3b (ENSSTUG00000005325)	ENSSTUG00000005309	map1lc3b (ENSSTUG00000005247)	det1 (ENSSTUG00000005229)	ntrk3a (ENSSTUG00000005163) ##18	ENSSTUG00000005151	KLHL25 (ENSSTUG00000005145)	ENSSTUG00000005140	ENSSTUG00000005058 #19	ENSSTUG00000005028 #19	ENSSTUG00000004676 ##20	ENSSTUG00000004647 #21	mespaa (ENSSTUG00000004640) #22	ENSSTUG00000004627	lrp5 (ENSSTUG00000004468)	ppp6r3 (ENSSTUG00000003338)	gal (ENSSTUG00000003271)	zgc:110339 (ENSSTUG00000003255)	ADAMTS20 (ENSSTUG00000002633)	ENSSTUG00000002563	IRAK4 (ENSSTUG00000002398)	twf1a (ENSSTUG00000002299)	ENSSTUG00000012720	TMEM117 (ENSSTUG00000012667)	NELL2 (ENSSTUG00000011734)	ENSSTUG00000011607	bsg (ENSSTUG00000011562)	RNF126 (ENSSTUG00000011546)
Oncorhynchus	ANCESTRAL SPECIES	2	ENSGT00940000157499.h	ENSGT00940000160052.j	ENSGT00550000074924.b	ENSGT00940000156978.lb	ENSGT00940000155581.B.c.b	ENSGT00950000183052.b.c.b.a.e.b.b	ENSGT00940000158707.a.b.n	ENSGT00520000055637.A.b.x	ENSGT00940000154158.a	ENSGT00390000005224.p	ENSGT00940000155645.j.f ##18	ENSGT00950000182983.B.b.e	ENSGT00940000154146.b.a.e.b #19	ENSGT00950000182940.b.a.a.g.a.d ##20	ENSGT00530000063712.a.a.o.b.e #21	ENSGT00530000063712.a.a.o.a.h #22	ENSGT00940000153377.B.b	ENSGT00940000156574.C.o.b	ENSGT00390000009899.a.d.m	ENSGT00390000009663.k	ENSGT00940000165046.a.e	ENSGT00940000158636.k.b	ENSGT00940000168978	ENSGT01000000220683	ENSGT00530000063868.b.j.a.a	ENSGT01100000263537.b.a.b.f.a.a	ENSGT00390000013052.n	ENSGT00810000125439.B.c.b.c.b	ENSGT00940000156523.b.c.d	ENSGT00940000159142.v	ENSGT00940000157113.c.a
Rainbow trout	MODERN SPECIES		ENSOMYG00000022405	slc7a5 (ENSOMYG00000021740)	ENSOMYG00000021590	jph3b (ENSOMYG00000021582)	ENSOMYG00000072661	ENSOMYG00000021572	ZCCHC14 (ENSOMYG00000021564)	map1lc3b (ENSOMYG00000077514)	det1 (ENSOMYG00000021514)	ENSOMYG00000070361	ntrk3a (ENSOMYG00000021434) ##18	ENSOMYG00000021312	ENSOMYG00000021264 #19	ENSOMYG00000021242 #19	ENSOMYG00000021108 ##20	ENSOMYG00000021029 #22	ENSOMYG00000021023	lrp5 (ENSOMYG00000020005)	ppp6r3 (ENSOMYG00000072211)	gal (ENSOMYG00000019845)	zgc:110339 (ENSOMYG00000019835)	ENSOMYG00000069570	ENSOMYG00000017613	ENSOMYG00000017356	ENSOMYG00000072210	twf1a (ENSOMYG00000017167)	ENSOMYG00000017145	ENSOMYG00000070427	ENSOMYG00000017060	NELL2 (ENSOMYG00000020216)	ENSOMYG00000019741
Oncorhynchus_a	ANCESTRAL SPECIES	1	ENSGT00940000157499.h	ENSGT00940000160052.j	ENSGT00550000074924.b	ENSGT00940000156978.lb	ENSGT00940000155581.B.c.b	ENSGT01030000234576.D.a.b.a.a.a.a.b.a	ENSGT00940000158707.a.b.n	ENSGT00520000055637.A.b.x	ENSGT00940000154158.a	ENSGT00390000005224.p	ENSGT00940000155645.j.f ##18	ENSGT00950000182983.B.b.e	ENSGT00940000154146.b.a.e.b #19	ENSGT00950000182940.b.a.a.g.a.d ##20	ENSGT00530000063712.a.a.o.b.e #21	ENSGT00530000063712.a.a.o.a.h #22	ENSGT00940000153377.B.b	ENSGT00940000156574.C.o.b	ENSGT00390000009899.a.d.m	ENSGT00390000009663.k	ENSGT00940000165046.a.e	ENSGT00940000158636.k.b	ENSGT00940000168978	ENSGT01000000220683	ENSGT00530000063868.b.j.a.a	ENSGT01100000263537.b.a.b.f.a.a	ENSGT00390000013052.n	ENSGT00810000125439.B.c.b.c.b	ENSGT00940000156523.b.c.d	ENSGT00940000159142.v	ENSGT00940000157113.c.a
Coho salmon	MODERN SPECIES	24	ENSOKIG00005031398	ENSOKIG00005031390	jph3b (ENSOKIG00005031375)	ENSOKIG00005031347	map1lc3b (ENSOKIG00005031279)	det1 (ENSOKIG00005031237)	ENSOKIG00005031228	ENSOKIG00005031224	ntrk3a (ENSOKIG00005031153) ##18	ENSOKIG00005031134	ENSOKIG00005031068	KLHL25 (ENSOKIG00005031064)	ENSOKIG00005030968 #19	ENSOKIG00005030168 ##20	ENSOKIG00005030082 #21	mespaa (ENSOKIG00005030065) #22	ENSOKIG00005030040	lrp5 (ENSOKIG00005029138)	ppp6r3 (ENSOKIG00005028858)	gal (ENSOKIG00005028823)	zgc:110339 (ENSOKIG00005028813)	ADAMTS20 (ENSOKIG00005028392)	ENSOKIG00005028343	ENSOKIG00005028327	twf1a (ENSOKIG00005028249)	ENSOKIG00005028235	TMEM117 (ENSOKIG00005028197)	ENSOKIG00005028192	NELL2 (ENSOKIG00005026000)	ENSOKIG00005025901	ENSOKIG00005025830
Chinook salmon	MODERN SPECIES	30	uba2 (ENSOTSG00005028666)	ca5a (ENSOTSG00005028654)	slc7a5 (ENSOTSG00005028652)	ENSOTSG00005028651	jph3b (ENSOTSG00005028650)	ENSOTSG00005044279	ENSOTSG00005044278	ENSOTSG00005044277	map1lc3b (ENSOTSG00005044275)	det1 (ENSOTSG00005044273)	ntrk3a (ENSOTSG00005044226) ##18	KLHL25 (ENSOTSG00005044225)	ENSOTSG00005044220 #19	ENSOTSG00005044206 ##20	ENSOTSG00005044205 #21	mespaa (ENSOTSG00005044204) #22	ENSOTSG00005044203	lrp5 (ENSOTSG00005039690)	ppp6r3 (ENSOTSG00005038577)	gal (ENSOTSG00005038559)	zgc:110339 (ENSOTSG00005038557)	ADAMTS20 (ENSOTSG00005038509)	ENSOTSG00005038496	ENSOTSG00005038494	twf1a (ENSOTSG00005038493)	TMEM117 (ENSOTSG00005038492)	NELL2 (ENSOTSG00005034120)	ENSOTSG00005034048	bsg (ENSOTSG00005034047)	RNF126 (ENSOTSG00005034046)	hapln4 (ENSOTSG00005034045)
Huchen	MODERN SPECIES	386														ENSHHUG00000042235 ##20	ENSHHUG00000042225 #21	mespaa (ENSHHUG00000042221) #22	ENSHHUG00000042187 ##24	ENSHHUG00000042185	lrp5 (ENSHHUG00000041905)	ppp6r3 (ENSHHUG00000041816)	gal (ENSHHUG00000041790)	zgc:110339 (ENSHHUG00000041786)	ADAMTS20 (ENSHHUG00000041523)	ENSHHUG00000041514	ENSHHUG00000041506	twf1a (ENSHHUG00000041442)	TMEM117 (ENSHHUG00000041433)	NELL2 (ENSHHUG00000041075)
Northern pike	MODERN SPECIES	18	uba2 (ENSELUG00000010858)	ca5a (ENSELUG00000032440)	slc7a5 (ENSELUG00000010773)	klhdc4 (ENSELUG00000010746)	jph3b (ENSELUG00000010714)	ZCCHC14 (ENSELUG00000010668)	map1lc3b (ENSELUG00000010626)	det1 (ENSELUG00000001233)	ntrk3a (ENSELUG00000010573) ##18	AGBL1 (ENSELUG00000010501)	KLHL25 (ENSELUG00000010409)	ENSELUG00000010364 #19	ENSELUG00000031032 #19	SV2B (ENSELUG00000010267) ##20	mespba (ENSELUG00000010218) #21	mespaa (ENSELUG00000033105) #22	ANPEP (ENSELUG00000001281) ##24	anpepb.1 (ENSELUG00000010173) ##24	ENSELUG00000025527	lrp5 (ENSELUG00000010119)	ppp6r3 (ENSELUG00000010007)	ENSELUG00000009910	gal (ENSELUG00000031732)	zgc:110339 (ENSELUG00000009774)	ENSELUG00000009746	ADAMTS20 (ENSELUG00000009675)	irak4 (ENSELUG00000009419)	twf1a (ENSELUG00000009405)	TMEM117 (ENSELUG00000009381)	ENSELUG00000029320	NELL2 (ENSELUG00000009344)
Otomorpha	ANCESTRAL SPECIES	6	ENSGT00940000165692	ENSGT00940000165521.b	ENSGT00390000003062	ENSGT00950000182957.a.b	ENSGT00940000157220.a	ENSGT00940000158881	ENSGT00950000182844.b.b.b.a.a	ENSGT00940000177011	ENSGT00940000159749	ENSGT00390000016068 #16	ENSGT00390000015400 #17	ENSGT00940000155645.i.b #18	ENSGT00940000154146.b.a #19	ENSGT00950000182940.b.a.a.g.b #20	ENSGT00530000063712.a.a.o.b #21	ENSGT00530000063712.a.a.o.a #22	ENSGT00940000164605.e	ENSGT00940000154876.a.a.a.b #23	ENSGT00940000154876.a.a.a.a #24	ENSGT00940000156682.e.a #26	ENSGT00940000157771 #27	ENSGT00940000156205.g	ENSGT00940000156291.e	ENSGT01010000222360.D.b	ENSGT00940000155391.a.b.b	ENSGT00390000001443	ENSGT00550000075025	ENSGT00390000007681.b.a.a	ENSGT00530000063074.b.a	ENSGT00940000159533	ENSGT00940000158651
Clupeiformes	ANCESTRAL SPECIES	64	ENSGT00940000154489.A.c	ENSGT00940000155047.ac.a	ENSGT00940000163854.b	ENSGT00730000111210	ENSGT00940000156912.c.a	ENSGT00940000158805.a	ENSGT00940000159515.c.b	ENSGT00940000158300.f	ENSGT00390000011846	ENSGT00940000159749	ENSGT00390000016068 #16	ENSGT00390000015400 #17	ENSGT00940000155645.i.b #18	ENSGT00950000182940.b.a.a.g.b #20	ENSGT00530000063712.a.a.o.b #21	ENSGT00530000063712.a.a.o.a #22	ENSGT00940000164605.e	ENSGT00940000154876.a.a.a.b #23	ENSGT00940000154876.a.a.a.a #24
Denticle herring	MODERN SPECIES	7	ENSDCDG00000019213	ENSDCDG00000019238	mns1 (ENSDCDG00000019253)	TPH1 (ENSDCDG00000019305)	kcnc1a (ENSDCDG00000020959)	cd81a (ENSDCDG00000020963)	PKP3 (ENSDCDG00000020969)	ANO9 (ENSDCDG00000020976)	tssc4 (ENSDCDG00000020982)	kif7 (ENSDCDG00000020994)	mrps11 (ENSDCDG00000021014) #16	mrpl46 (ENSDCDG00000021015) #17	NTRK3 (ENSDCDG00000021018) #18	sv2ba (ENSDCDG00000021060) #20	mespba (ENSDCDG00000021065) #21	mespaa (ENSDCDG00000021068) #22	ANPEP (ENSDCDG00000021077) #23	igf1rb (ENSDCDG00000021396) #26	heatr3 (ENSDCDG00000026323)	ankdd1a (ENSDCDG00000026335)	spg21 (ENSDCDG00000026337)	clpxa (ENSDCDG00000026341)	pdcd7 (ENSDCDG00000026391)	UBAP1L (ENSDCDG00000026393)	KBTBD13 (ENSDCDG00000026395)	rasl12 (ENSDCDG00000026396)	mtfmt (ENSDCDG00000026399)	lin7c (ENSDCDG00000026549)	bdnf (ENSDCDG00000022758)	KIF18A (ENSDCDG00000022759)	mettl15 (ENSDCDG00000022769)
Atlantic herring	MODERN SPECIES	12	cd81a (ENSCHAG00000000536)	ENSCHAG00000000565	ENSCHAG00000001269	ENSCHAG00000003259	tssc4 (ENSCHAG00000003290)	kif7 (ENSCHAG00000003319)	ENSCHAG00000003796	mrps11 (ENSCHAG00000003809) #16	mrpl46 (ENSCHAG00000003817) #17	NTRK3 (ENSCHAG00000003845) #18	ENSCHAG00000004387	ENSCHAG00000004422 #19	ENSCHAG00000004473 #19	sv2ba (ENSCHAG00000004568) #20	mespba (ENSCHAG00000004927) #21	mespaa (ENSCHAG00000004956) #22	ENSCHAG00000005002	ANPEP (ENSCHAG00000005419) #23	ANPEP (ENSCHAG00000005920) #24	HSBP1 (ENSCHAG00000006439)	arl14ep (ENSCHAG00000006478)	ENSCHAG00000006484	KCNA4 (ENSCHAG00000006510)	lgr4 (ENSCHAG00000006519)	mettl15 (ENSCHAG00000006571)	KIF18A (ENSCHAG00000006597)	bdnf (ENSCHAG00000006667)	lin7c (ENSCHAG00000006687)	mybpc3 (ENSCHAG00000006886)	mtfmt (ENSCHAG00000009903)	rasl12 (ENSCHAG00000009949)
Otophysi	ANCESTRAL SPECIES	72	ENSGT00940000161629.a	ENSGT00940000160167	ENSGT00950000182902.b.a.d.b.a	ENSGT00940000164526.a	ENSGT00940000164669	ENSGT00940000158881	ENSGT00950000182844.b.b.b.a.a.i	ENSGT00940000177011	ENSGT00940000159749	ENSGT00390000016068 #16	ENSGT00390000015400 #17	ENSGT00940000155645.i.b #18	ENSGT00940000154146.b.a #19	ENSGT00950000182940.b.a.a.g.b #20	ENSGT00530000063712.a.a.o.b.a.a #21	ENSGT00530000063712.a.a.o.a #22	ENSGT00940000164605.e	ENSGT00940000154876.a.a.a.b #23	ENSGT00940000154876.a.a.a.a #24	ENSGT00940000156682.e.a #26	ENSGT00940000157771 #27	ENSGT00940000156205.g	ENSGT00940000156205.h	ENSGT00940000156291.f	ENSGT00940000156291.e	ENSGT01010000222360.D.b	ENSGT00940000155391.a.b.b	ENSGT00390000001443	ENSGT00550000075025	ENSGT00950000183093.B.b	ENSGT00940000155663.f.a
Characiphysae	ANCESTRAL SPECIES	8	ENSGT00940000160167	ENSGT00950000182902.b.a.d.b.a	ENSGT00940000164526.a	ENSGT00940000164669	ENSGT00940000157220.a	ENSGT00940000158881	ENSGT00950000182844.b.b.b.a.a.i	ENSGT00940000177011	ENSGT00940000159749	ENSGT00390000016068 #16	ENSGT00390000015400 #17	ENSGT00940000155645.i.b #18	ENSGT00940000154146.b.a #19	ENSGT00950000182940.b.a.a.g.b #20	ENSGT00530000063712.a.a.o.b.a.a #21	ENSGT00530000063712.a.a.o.a #22	ENSGT00940000154876.a.a.a.b #23	ENSGT00940000154876.a.a.a.a #24	ENSGT00940000156682.e.a #26	ENSGT00940000157771 #27	ENSGT00940000156205.g	ENSGT00940000156291.e	ENSGT00390000007753.a	ENSGT00940000153986.b.a.u.b	ENSGT00940000156318.b.b	ENSGT00530000063405.a	ENSGT00390000011249	ENSGT00390000011698.c.a.b	ENSGT00940000160591.a.a	ENSGT00940000166218	ENSGT00950000183095.a.b.a.b.b.a
Channel catfish	MODERN SPECIES	1	rlbp1 (ENSIPUG00000022926)	SLC39A2 (ENSIPUG00000022916)	ENSIPUG00000022897	furina (ENSIPUG00000022809)	V-FPS (ENSIPUG00000022771)	rhcga (ENSIPUG00000022758)	ENSIPUG00000022596	kif7 (ENSIPUG00000022517)	MRPS11 (ENSIPUG00000022494) #16	mrpl46 (ENSIPUG00000022487) #17	ntrk3 (ENSIPUG00000022403) #18	ENSIPUG00000022328 #19	ENSIPUG00000022313 #19	Sv2b (ENSIPUG00000022299) #20	mespba (ENSIPUG00000022294) #21	mespaa (ENSIPUG00000022281) #22	ANPEP (ENSIPUG00000022254) #24	ENSIPUG00000022242	Igf1r (ENSIPUG00000022197) #26	lrrc28 (ENSIPUG00000022158) #27	ENSIPUG00000022132	ENSIPUG00000022109	ENSIPUG00000022099	ero1b (ENSIPUG00000022054)	gpr137b (ENSIPUG00000022038)	nid1 (ENSIPUG00000022017)	tbce (ENSIPUG00000021983)	rbm34 (ENSIPUG00000021952)	tomm20b (ENSIPUG00000021935)	ENSIPUG00000021929	irf2bp2 (ENSIPUG00000021926)
Characiphysae_b	ANCESTRAL SPECIES	4	ENSGT00950000182902.b.a.d.b.a	ENSGT00940000164526.a	ENSGT00940000164669	ENSGT00950000182957.a.a.b	ENSGT00940000157220.a	ENSGT00940000158881	ENSGT00950000182844.b.b.b.a.a.i	ENSGT00940000159749	ENSGT00940000177011	ENSGT00390000016068 #16	ENSGT00390000015400 #17	ENSGT00940000155645.i.b #18	ENSGT00940000154146.b.a #19	ENSGT00950000182940.b.a.a.g.b #20	ENSGT00530000063712.a.a.o.b.a.a #21	ENSGT00530000063712.a.a.o.a #22	ENSGT00940000154876.a.a.a.b #23	ENSGT00940000154876.a.a.a.a #24	ENSGT00940000156682.e.a #26	ENSGT00940000157771 #27	ENSGT00940000156205.g	ENSGT00940000156291.e	ENSGT00390000007753.a	ENSGT00940000153986.b.a.u.b	ENSGT00940000156318.b.b	ENSGT00530000063405.a	ENSGT00390000011249	ENSGT00390000011698.c.a.b	ENSGT00940000160591.a.a	ENSGT00940000166218	ENSGT00950000183095.a.b.a.b.b.a
Characoidei	ANCESTRAL SPECIES	18	ENSGT00950000182957.a.a.b	ENSGT00940000157220.a	ENSGT00940000158881	ENSGT00950000182844.b.b.b.a.a.i.c	ENSGT00950000182844.b.b.b.a.a.i.d	ENSGT00940000159749	ENSGT00940000177011	ENSGT00390000016068 #16	ENSGT00390000015400 #17	ENSGT00940000155645.i.b #18	ENSGT00940000154146.b.a.t #19	ENSGT00990000209097	ENSGT00940000154146.b.a.s #19	ENSGT00950000182940.b.a.a.g.b #20	ENSGT00530000063712.a.a.o.b.a.a #21	ENSGT00530000063712.a.a.o.a #22	ENSGT00940000154876.a.a.a.b #23	ENSGT00940000154876.a.a.a.a #24	ENSGT00940000156682.e.a #26	ENSGT00940000157771 #27	ENSGT00940000156205.h	ENSGT00940000156291.f	ENSGT00940000156291.e	ENSGT00390000007753.a	ENSGT00940000153986.b.a.u.b	ENSGT00940000156318.b.b	ENSGT00530000063405.a	ENSGT00390000011249	ENSGT00390000011698.c.a.b	ENSGT00940000160591.a.a	ENSGT00940000166218
Red-bellied piranha	MODERN SPECIES	62	fes (ENSPNAG00000002715)	rhcga (ENSPNAG00000013369)	ENSPNAG00000005134	ENSPNAG00000013390	rhcga (ENSPNAG00000013417)	ENSPNAG00000002741	kif7 (ENSPNAG00000002750)	mrps11 (ENSPNAG00000002759) #16	mrpl46 (ENSPNAG00000013468) #17	NTRK3 (ENSPNAG00000007107) #18	ENSPNAG00000013536 ##19	ENSPNAG00000013542	ENSPNAG00000002819 #19	sv2ba (ENSPNAG00000013626) #20	mespba (ENSPNAG00000002870) #21	mespaa (ENSPNAG00000013677) #22	ANPEP (ENSPNAG00000014278) #23	ANPEP (ENSPNAG00000014622) #23	ANPEP (ENSPNAG00000014668) #24	igf1rb (ENSPNAG00000014746) #26	LRRC28 (ENSPNAG00000014781) #27	ENSPNAG00000014801	MCTP2 (ENSPNAG00000014920)	ENSPNAG00000014932
Mexicana tetra	MODERN SPECIES	20	ing5a (ENSAMXG00000021559)	cep19 (ENSAMXG00000021558)	pigx (ENSAMXG00000021557)	pak2b (ENSAMXG00000021556)	si:dkey-10o6.2 (ENSAMXG00000021555)	rpp21 (ENSAMXG00000030709)	kif7 (ENSAMXG00000021552)	ENSAMXG00000037959	mrps11 (ENSAMXG00000021547) #16	mrpl46 (ENSAMXG00000030876) #17	NTRK3 (ENSAMXG00000039792) #18	si:dkey-172h23.2 (ENSAMXG00000021520) #19	ENSAMXG00000038003 #19	sv2ba (ENSAMXG00000021489) #20	mespba (ENSAMXG00000040981) #21	mespaa (ENSAMXG00000041487) #22	ANPEP (ENSAMXG00000021468) #23	ENSAMXG00000021464	ANPEP (ENSAMXG00000031216) #23	ANPEP (ENSAMXG00000021446) #24	igf1rb (ENSAMXG00000021415) #26	LRRC28 (ENSAMXG00000040593) #27	ENSAMXG00000029762	ENSAMXG00000021393	ENSAMXG00000021387	ero1b (ENSAMXG00000021371)	GPR137B (ENSAMXG00000021361)	NID1 (ENSAMXG00000021348)	tbce (ENSAMXG00000021338)	ENSAMXG00000040370	rbm34 (ENSAMXG00000021328)
Electric eel	MODERN SPECIES	79	abhd2a (ENSEEEG00000015410)	rlbp1a (ENSEEEG00000015513)	slc39a1 (ENSEEEG00000015515)	furina (ENSEEEG00000015527)	fes (ENSEEEG00000015797)	rhcga (ENSEEEG00000015813)	rhcga (ENSEEEG00000015834)	kif7 (ENSEEEG00000016392)	ENSEEEG00000016393	mrps11 (ENSEEEG00000016395) #16	mrpl46 (ENSEEEG00000016397) #17	NTRK3 (ENSEEEG00000016399) #18	si:dkey-172h23.2 (ENSEEEG00000016402) #19	ENSEEEG00000016404 #19	sv2ba (ENSEEEG00000016405) #20	mespaa (ENSEEEG00000016407) #22	ENSEEEG00000016410 #23
Cyprinoidei	ANCESTRAL SPECIES	14	ENSGT00950000182902.b.a.d.b.a	ENSGT00940000164526.a	ENSGT00940000164669.k	ENSGT00950000182957.a.a.b	ENSGT00940000157220.a	ENSGT00940000158881	ENSGT00950000182844.b.b.b.a.a.i	ENSGT00940000159749	ENSGT00390000016068 #16	ENSGT00390000015400 #17	ENSGT00940000155645.i.b #18	ENSGT00940000154146.b.a #19	ENSGT00950000182940.b.a.a.g.b #20	ENSGT00530000063712.a.a.o.b.a.a #21	ENSGT00530000063712.a.a.o.b.a.b #21	ENSGT00530000063712.a.a.o.a #22	ENSGT00940000154876.a.a.a.b #23	ENSGT00940000154876.a.a.a.a #24	ENSGT00940000156682.e.a #26	ENSGT00940000157771 #27	ENSGT00940000156205.h.k.a	ENSGT00940000156291.e	ENSGT01010000222360.D.b	ENSGT00940000155391.a.b.b	ENSGT00390000001443	ENSGT00550000075025	ENSGT01040000240385.A.b.b.b.a.a.b.a.b.a.a.b	ENSGT00950000183093.B.b	ENSGT00940000155663.f.a	ENSGT00390000007681.b.a.a	ENSGT00530000063074.b.a
Zebrafish	DUPLICATION
Zebrafish	MODERN SPECIES	22	KBTBD13 (ENSDARG00000076449)	rasl12 (ENSDARG00000002701)	abhd2a (ENSDARG00000025797)	rlbp1a (ENSDARG00000012504)	slc39a1 (ENSDARG00000058257)	ENSDARG00000105391	furina (ENSDARG00000062909)	fes (ENSDARG00000011449)	rhcga (ENSDARG00000003203)	kif7 (ENSDARG00000033099)	mrps11 (ENSDARG00000075129) #16	mrpl46 (ENSDARG00000016307) #17	NTRK3 (ENSDARG00000086214) #18	si:dkey-172h23.2 (ENSDARG00000023868) #19	sv2ba (ENSDARG00000057427) #20	mespaa (ENSDARG00000017078) #22	mespba (ENSDARG00000030347) #21	ENSDARG00000089706	ANPEP (ENSDARG00000036809) #24	igf1rb (ENSDARG00000034434) #26	LRRC28 (ENSDARG00000057477) #27	ENSDARG00000057527	ENSDARG00000073970	RCN1 (ENSDARG00000070006)	pax6b (ENSDARG00000045936)	elp4 (ENSDARG00000008852)	immp1l (ENSDARG00000045935)	ENSDARG00000105564	ENSDARG00000060962	btr05 (ENSDARG00000074813)	btr06 (ENSDARG00000054184)
Zebrafish	MODERN SPECIES	17	uba2 (ENSDARG00000101332)	ca5a (ENSDARG00000101778)	slc7a5 (ENSDARG00000099265)	klhdc4 (ENSDARG00000100206)	jph3b (ENSDARG00000102204)	ZCCHC14 (ENSDARG00000101242)	ENSDARG00000103098	map1lc3b (ENSDARG00000101127)	det1 (ENSDARG00000098247)	ntrk3a (ENSDARG00000077228) ##18	ENSDARG00000104384	KLHL25 (ENSDARG00000102418)	ENSDARG00000079994 #19	SV2B (ENSDARG00000060711) ##20	mespbb (ENSDARG00000097947) #21	mespab (ENSDARG00000068761) #22	mhc1lia (ENSDARG00000097766)	mhc1lga (ENSDARG00000051713)	si:dkey-52p2.5 (ENSDARG00000096940)	mhc1lla (ENSDARG00000096977)	mhc1lda (ENSDARG00000023203)	mhc1lfa (ENSDARG00000051712)	ENSDARG00000051711	ENSDARG00000097352	mhc1lja (ENSDARG00000096830)	ENSDARG00000115781	ENSDARG00000051710	ENSDARG00000097275	ANPEP (ENSDARG00000097285) ##24	anpepb.1 (ENSDARG00000103878) ##24	ENSDARG00000089303
Cyprininae	DUPLICATION
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	228	ENSGT00940000160167.b	ENSGT00950000182902.b.a.d.b.a.c	ENSGT00940000164526.a.c	ENSGT00940000164669.k.a	ENSGT00950000182957.a.a.b.fc.b	ENSGT00940000157220.a.c	ENSGT00940000158881.m	ENSGT00950000182844.b.b.b.a.a.i.f	ENSGT00940000159749.c	ENSGT00390000016068.b #16	ENSGT00390000015400.j #17	ENSGT00940000155645.i.b.a #18	ENSGT00940000154146.b.a.x.b #19	ENSGT00950000182940.b.a.a.g.b.b #20	ENSGT00530000063712.a.a.o.b.a.a.a.b #21	ENSGT00530000063712.a.a.o.a.k.a #22	ENSGT00940000154876.a.a.a.b.f #23	ENSGT00940000154876.a.a.a.a.b #24	ENSGT00940000156682.e.a.a #26	ENSGT00940000157771.t #27	ENSGT00940000156205.h.k.a.b	ENSGT00940000156205.h.k.b.a	ENSGT00940000156291.e.a	ENSGT01010000222360.D.b.f	ENSGT00940000155391.a.b.b.a	ENSGT00390000001443.a	ENSGT00550000075025.d	ENSGT01040000240385.A.b.b.b.a.a.b.a.b.a.b.a.a.a.a	ENSGT00390000007681.b.a.a.m.b	ENSGT00530000063074.b.a.j	ENSGT00940000159533.o
Cyprininae_a	ANCESTRAL SPECIES	185	ENSGT00940000160167.b	ENSGT00950000182902.b.a.d.b.a.c	ENSGT00940000164526.a.c	ENSGT00940000164669.k.a	ENSGT00950000182957.a.a.b.fc.b	ENSGT00940000157220.a.c	ENSGT00940000158881.m	ENSGT00950000182844.b.b.b.a.a.i.f	ENSGT00940000159749.c	ENSGT00390000016068.b.a #16	ENSGT00390000015400.j #17	ENSGT00940000155645.i.b.a #18	ENSGT00940000154146.b.a.x.b #19	ENSGT00950000182940.b.a.a.g.b.b #20	ENSGT00530000063712.a.a.o.b.a.a.a.b #21	ENSGT00530000063712.a.a.o.a.k.a #22	ENSGT00940000154876.a.a.a.b.f #23	ENSGT00940000154876.a.a.a.a.b #24	ENSGT00940000156682.e.a.a #26	ENSGT00940000157771.t #27	ENSGT00940000156205.h.k.a.b	ENSGT00940000156205.h.k.b.a	ENSGT00940000156291.e.a	ENSGT01010000222360.D.b.f	ENSGT00940000155391.a.b.b.a	ENSGT00390000001443.a	ENSGT00550000075025.d	ENSGT01040000240385.A.b.b.b.a.a.b.a.b.a.b.a.a.b	ENSGT01040000240385.A.b.b.b.a.a.b.a.b.a.b.a.a.a.a	ENSGT00390000007681.b.a.a.m.b	ENSGT00530000063074.b.a.j
Golden-line barbel	MODERN SPECIES	1290														ENSSGRG00000053252 #19	sv2ba (ENSSGRG00000053124) #20	mespaa (ENSSGRG00000053104) #22	ANPEP (ENSSGRG00000053100) #23	ANPEP (ENSSGRG00000053091) #24
Goldfish	MODERN SPECIES	47	dock11 (ENSCARG00000067570)	slc39a1 (ENSCARG00000067544)	ENSCARG00000067517	ENSCARG00000067506	furina (ENSCARG00000066982)	fes (ENSCARG00000066532)	rhcga (ENSCARG00000066260)	kif7 (ENSCARG00000066113)	mrps11 (ENSCARG00000066088) #16	mrpl46 (ENSCARG00000066075) #17	NTRK3 (ENSCARG00000065763) #18	ENSCARG00000065715 #19	ENSCARG00000065677 #19	sv2ba (ENSCARG00000065653) #20	mespba (ENSCARG00000065645) #21	mespaa (ENSCARG00000065640) #22	ENSCARG00000064612 #23	ANPEP (ENSCARG00000064330) #24	igf1rb (ENSCARG00000057409) #26	LRRC28 (ENSCARG00000057035) #27	ENSCARG00000057020	ENSCARG00000057010	ENSCARG00000056603	RCN1 (ENSCARG00000056482)	pax6b (ENSCARG00000054974)	elp4 (ENSCARG00000054681)	immp1l (ENSCARG00000054630)	ENSCARG00000054586	ENSCARG00000054449	mpped2a (ENSCARG00000054421)	zdhhc13 (ENSCARG00000054036)
Cyprininae	ANCESTRAL SPECIES	161	ENSGT00940000160167.a	ENSGT00950000182902.b.a.d.b.a.d	ENSGT00940000164526.a.d	ENSGT00940000164669.k.b	ENSGT00950000182957.a.a.b.fc.a	ENSGT00940000157220.a.d	ENSGT00940000158881.n	ENSGT00950000182844.b.b.b.a.a.i.e	ENSGT00940000159749.d	ENSGT00390000016068.a #16	ENSGT00390000015400.i #17	ENSGT00940000155645.i.b.b #18	ENSGT00940000154146.b.a.x.a #19	ENSGT00950000182940.b.a.a.g.b.a #20	ENSGT00530000063712.a.a.o.b.a.a.a.a #21	ENSGT00530000063712.a.a.o.a.k.b #22	ENSGT00940000154876.a.a.a.b.e #23	ENSGT00940000154876.a.a.a.a.a #24	ENSGT00940000156682.e.a.b #26	ENSGT00940000157771.s #27	ENSGT00940000156205.h.k.a.a	ENSGT00940000156291.e.b	ENSGT01010000222360.D.b.e	ENSGT00940000155391.a.b.b.b	ENSGT00390000001443.b	ENSGT00550000075025.c	ENSGT01040000240385.A.b.b.b.a.a.b.a.b.a.b.a.a.a.b	ENSGT00390000007681.b.a.a.m.a.b.b
Goldfish	DUPLICATION
Goldfish	MODERN SPECIES	2639															ENSCARG00000045255	mespaa (ENSCARG00000045278) #22	ANPEP (ENSCARG00000060840) #23
Goldfish	MODERN SPECIES	25	KBTBD13 (ENSCARG00000013381)	rasl12 (ENSCARG00000013386)	abhd2a (ENSCARG00000013398)	slc39a1 (ENSCARG00000013451)	ENSCARG00000013456	furina (ENSCARG00000013542)	fes (ENSCARG00000014213)	rhcga (ENSCARG00000014595)	kif7 (ENSCARG00000014768)	mrps11 (ENSCARG00000014953) #16	mrpl46 (ENSCARG00000014990) #17	NTRK3 (ENSCARG00000015022) #18	ENSCARG00000015128 #19	sv2ba (ENSCARG00000015152) #20	mespba (ENSCARG00000015180) #21	mespaa (ENSCARG00000015187) #22	ENSCARG00000015208 #23	igf1rb (ENSCARG00000015482) #26	LRRC28 (ENSCARG00000005854) #27	ENSCARG00000005874	ENSCARG00000005902	RCN1 (ENSCARG00000006002)	pax6b (ENSCARG00000006174)	elp4 (ENSCARG00000008441)	immp1l (ENSCARG00000008452)	ENSCARG00000008468	CEMIP (ENSCARG00000008591)	mesd (ENSCARG00000011791)	TLNRD1 (ENSCARG00000011803)	asb7 (ENSCARG00000011809)	ENSCARG00000011819
Cyprininae_a	ANCESTRAL SPECIES	248	ENSGT00950000182902.b.a.d.b.a.d	ENSGT00940000164526.a.d	ENSGT00940000164669.k.b	ENSGT00950000182957.a.a.b.fc.a	ENSGT00940000157220.a.d	ENSGT00940000158881.n	ENSGT00950000182844.b.b.b.a.a.i.e	ENSGT00940000159749.d	ENSGT00390000016068.a #16	ENSGT00390000015400.i #17	ENSGT00960000189817	ENSGT00940000155645.i.b.b #18	ENSGT00940000154146.b.a.x.a #19	ENSGT00950000182940.b.a.a.g.b.a #20	ENSGT00530000063712.a.a.o.b.a.a.a.a #21	ENSGT00530000063712.a.a.o.a.k.b #22	ENSGT00940000154876.a.a.a.b.e #23	ENSGT00940000154876.a.a.a.a.a #24	ENSGT00940000156682.e.a.b #26	ENSGT00940000157771.s #27	ENSGT00940000156205.h.k.a.a	ENSGT00940000156291.e.b	ENSGT01010000222360.D.b.e	ENSGT00940000155391.a.b.b.b	ENSGT00390000001443.b	ENSGT00550000075025.c	ENSGT01040000240385.A.b.b.b.a.a.b.a.b.a.a.b
Common carp reference	MODERN SPECIES	6	abhd2a (ENSCCRG00000051285)	rlbp1a (ENSCCRG00000051310)	slc39a1 (ENSCCRG00000080062)	ENSCCRG00000040453	ENSCCRG00000067333	furina (ENSCCRG00000039242)	fes (ENSCCRG00000010640)	rhcga (ENSCCRG00000017377)	kif7 (ENSCCRG00000017349)	mrps11 (ENSCCRG00000017355) #16	mrpl46 (ENSCCRG00000067215) #17	NTRK3 (ENSCCRG00000005300) #18	si:dkey-172h23.2 (ENSCCRG00000021605) #19	sv2ba (ENSCCRG00000021601) #20	mespba (ENSCCRG00000021596) #21	mespaa (ENSCCRG00000021594) #22	ENSCCRG00000061982 #23	ENSCCRG00000045382 #24	igf1rb (ENSCCRG00000002287) #26	ENSCCRG00000079595 #27	ENSCCRG00000021133	ENSCCRG00000021147	RCN1 (ENSCCRG00000077682)	pax6b (ENSCCRG00000045912)	elp4 (ENSCCRG00000068491)	immp1l (ENSCCRG00000024529)	ENSCCRG00000065816	mpped2a (ENSCCRG00000007213)	zdhhc13 (ENSCCRG00000079798)	csrp3 (ENSCCRG00000065216)	e2f8 (ENSCCRG00000055364)
Golden-line barbel	MODERN SPECIES	189	KBTBD13 (ENSSGRG00000036421)	rasl12 (ENSSGRG00000036422)	rlbp1a (ENSSGRG00000036426)	ENSSGRG00000036429	furina (ENSSGRG00000036455)	fes (ENSSGRG00000037255)	rhcga (ENSSGRG00000037351)	ENSSGRG00000037361	mrps11 (ENSSGRG00000037362) #16	mrps11 (ENSSGRG00000037364) #16	ENSSGRG00000037367	NTRK3 (ENSSGRG00000037372) #18	ENSSGRG00000037380 #19	sv2ba (ENSSGRG00000037385) #20	mespba (ENSSGRG00000037917) #21	mespaa (ENSSGRG00000037918) #22	ENSSGRG00000037919	ANPEP (ENSSGRG00000037924) #23	ANPEP (ENSSGRG00000038984) #24	igf1rb (ENSSGRG00000039057) #26	ENSSGRG00000042028 #27	ENSSGRG00000042030	ENSSGRG00000042036	RCN1 (ENSSGRG00000042120)	pax6b (ENSSGRG00000042121)	elp4 (ENSSGRG00000042292)	immp1l (ENSSGRG00000042293)	ENSSGRG00000042294	ENSSGRG00000042295	mpped2a (ENSSGRG00000042297)	mpped2a (ENSSGRG00000042298)
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	57	ENSGT00990000206020.a.b	ENSGT00550000074924.c	ENSGT00940000156978.kb	ENSGT00940000155581.B.f	ENSGT00390000003374.g.a	ENSGT00940000158707.a.b.q.a	ENSGT00520000055637.A.b.yb	ENSGT00940000154158.i	ENSGT00390000005224.r	ENSGT00940000155645.j.c ##18	ENSGT00940000160936.d	ENSGT00950000182983.B.b.d	ENSGT00940000154146.b.a.w.b #19	ENSGT00950000182940.b.a.a.g.a.a ##20	ENSGT00530000063712.a.a.o.b.a.b.a #21	ENSGT00530000063712.a.a.o.a.l.a #22	ENSGT01100000263475.f.a.e.b.b	ENSGT01100000263475.f.a.e.b.a.a.a	ENSGT00940000154876.a.b.a.a ##24	ENSGT00970000193421.C.b.i.b #25	ENSGT00940000153377.B.c	ENSGT00940000156574.C.u	ENSGT00390000009899.a.d.o	ENSGT00990000209978.a	ENSGT00390000009663.i.a.a	ENSGT00940000165046.a	ENSGT00940000161379	ENSGT00990000204217.b	ENSGT00390000001802.ib.a	ENSGT00390000014700.b.a.a.a	ENSGT00940000159310.a
Goldfish	DUPLICATION
Goldfish	MODERN SPECIES	17	ENSCARG00000013675	ENSCARG00000013651	ada2a (ENSCARG00000013642)	ribc2 (ENSCARG00000013632)	ENSCARG00000013124	DYRK4 (ENSCARG00000013061)	zgc:154077 (ENSCARG00000013000)	zgc:77158 (ENSCARG00000012991)	fgf6a (ENSCARG00000012982)	tigara (ENSCARG00000012969)	ccnd2a (ENSCARG00000012945)	KLHL25 (ENSCARG00000012939)	ENSCARG00000012921	ENSCARG00000012643 ##20	mespbb (ENSCARG00000012632) #21	mespab (ENSCARG00000012629) #22	mhc1lga (ENSCARG00000012625)	ENSCARG00000012617	ENSCARG00000012615	anpepb.1 (ENSCARG00000009860) ##24	AP3S2 (ENSCARG00000009763) #25	ENSCARG00000009758	lrp5 (ENSCARG00000006697)	ppp6r3 (ENSCARG00000006093)	ENSCARG00000006042	gal (ENSCARG00000006030)	zgc:110339 (ENSCARG00000006022)	ENSCARG00000006018	cox8b (ENSCARG00000006008)	psmd13 (ENSCARG00000005621)	ric8a (ENSCARG00000005401)
Goldfish	MODERN SPECIES	1219														ENSCARG00000032788 ##20	mespbb (ENSCARG00000033085) #21	mespab (ENSCARG00000033093) #22	ENSCARG00000033097	ENSCARG00000033123	ENSCARG00000030518	anpepb.1 (ENSCARG00000030735) ##24
Cyprininae_a	ANCESTRAL SPECIES	106	ENSGT00990000206020.a.b	ENSGT00550000074924.c	ENSGT00940000156978.kb	ENSGT00940000155581.B.f	ENSGT00390000003374.g.a	ENSGT00940000158707.a.b.q.a	ENSGT00520000055637.A.b.yb	ENSGT00940000154158.i	ENSGT00390000005224.r	ENSGT00940000155645.j.c ##18	ENSGT00940000160936.d	ENSGT00950000182983.B.b.d	ENSGT00940000154146.b.a.w.b #19	ENSGT00950000182940.b.a.a.g.a.a ##20	ENSGT00530000063712.a.a.o.b.a.b.a #21	ENSGT00530000063712.a.a.o.a.l.a #22	ENSGT01100000263475.f.a.e.b.b.b	ENSGT00940000154876.a.b.a.a ##24	ENSGT00970000193421.C.b.i.a #25	ENSGT00940000153377.B.c	ENSGT00940000156574.C.u	ENSGT00390000009899.a.d.o	ENSGT00990000209978.a	ENSGT00390000009663.i.a.a	ENSGT00940000165046.a	ENSGT00940000161379	ENSGT00990000204217.b	ENSGT00390000001802.ib.a	ENSGT00390000014700.b.a.a.a	ENSGT00940000159310.a	ENSGT00940000157405.c.a.a
Common carp reference	DUPLICATION
Common carp reference	MODERN SPECIES	37	uba2 (ENSCCRG00000001245)	ca5a (ENSCCRG00000065075)	ENSCCRG00000081210	slc7a5 (ENSCCRG00000001021)	klhdc4 (ENSCCRG00000066095)	jph3b (ENSCCRG00000038054)	ENSCCRG00000058833	map1lc3b (ENSCCRG00000028252)	det1 (ENSCCRG00000028334)	ntrk3a (ENSCCRG00000009333) ##18	KLHL25 (ENSCCRG00000071936)	AGBL1 (ENSCCRG00000030098)	ENSCCRG00000060604 #19	ENSCCRG00000040010 ##20	mespbb (ENSCCRG00000030820) #21	mespab (ENSCCRG00000067084) #22	ENSCCRG00000030812	ENSCCRG00000040316	mespab (ENSCCRG00000040312) #22	ENSCCRG00000072483	ENSCCRG00000040302	anpepb.1 (ENSCCRG00000040290) ##24	anpepb.1 (ENSCCRG00000040240) ##24	ap3s2 (ENSCCRG00000040121) #25	lrp5 (ENSCCRG00000009797)	ppp6r3 (ENSCCRG00000010181)	ENSCCRG00000012535	gal (ENSCCRG00000012523)	zgc:110339 (ENSCCRG00000012538)	ENSCCRG00000012542	psmd13 (ENSCCRG00000062974)
Common carp reference	MODERN SPECIES	37	slc7a5 (ENSCCRG00000001021)	klhdc4 (ENSCCRG00000066095)	jph3b (ENSCCRG00000038054)	ENSCCRG00000058833	map1lc3b (ENSCCRG00000028252)	det1 (ENSCCRG00000028334)	ntrk3a (ENSCCRG00000009333) ##18	KLHL25 (ENSCCRG00000071936)	AGBL1 (ENSCCRG00000030098)	ENSCCRG00000060604 #19	ENSCCRG00000040010 ##20	mespbb (ENSCCRG00000030820) #21	mespab (ENSCCRG00000067084) #22	ENSCCRG00000030812	ENSCCRG00000040316	mespab (ENSCCRG00000040312) #22	ENSCCRG00000072483	ENSCCRG00000040302	anpepb.1 (ENSCCRG00000040290) ##24	anpepb.1 (ENSCCRG00000040240) ##24	ap3s2 (ENSCCRG00000040121) #25	lrp5 (ENSCCRG00000009797)	ppp6r3 (ENSCCRG00000010181)	ENSCCRG00000012535	gal (ENSCCRG00000012523)	zgc:110339 (ENSCCRG00000012538)	ENSCCRG00000012542	psmd13 (ENSCCRG00000062974)	ric8a (ENSCCRG00000019044)	ehf (ENSCCRG00000004750)	lrrc4ca (ENSCCRG00000071157)
Golden-line barbel	MODERN SPECIES	37	ENSSGRG00000038224	uba2 (ENSSGRG00000038019)	ca5a (ENSSGRG00000037992)	slc7a5 (ENSSGRG00000037443)	ENSSGRG00000037423	jph3b (ENSSGRG00000037416)	map1lc3b (ENSSGRG00000037348)	det1 (ENSSGRG00000037339)	ntrk3a (ENSSGRG00000037329) ##18	ENSSGRG00000037328	KLHL25 (ENSSGRG00000037327)	ENSSGRG00000037324 #19	ENSSGRG00000037320 #19	ENSSGRG00000036762 ##20	mespbb (ENSSGRG00000036756) #21	mespab (ENSSGRG00000036755) #22	mhc1lga (ENSSGRG00000036754)	anpepb.1 (ENSSGRG00000036753) ##24	ap3s2 (ENSSGRG00000036752) #25	ENSSGRG00000036751	lrp5 (ENSSGRG00000034220)	ppp6r3 (ENSSGRG00000034077)	ENSSGRG00000034069	gal (ENSSGRG00000034053)	zgc:110339 (ENSSGRG00000034048)	ENSSGRG00000034047	cox8b (ENSSGRG00000034046)	psmd13 (ENSSGRG00000033391)	ric8a (ENSSGRG00000033287)	ehf (ENSSGRG00000033284)	ENSSGRG00000033282
Cyprininae	ANCESTRAL SPECIES	145	ENSGT00940000155581.B.e	ENSGT00390000003374.g.b	ENSGT00940000158707.a.b.q.b	ENSGT00940000175810	ENSGT00390000003374.h	ENSGT00940000158707.a.b.r	ENSGT00520000055637.A.b.xb	ENSGT00940000154158.j	ENSGT00390000005224.q	ENSGT00940000155645.j.d ##18	ENSGT00940000160936.c	ENSGT00950000182983.B.b.c	ENSGT00940000154146.b.a.w.a #19	ENSGT00950000182940.b.a.a.g.a.b ##20	ENSGT00530000063712.a.a.o.b.a.b.b #21	ENSGT00530000063712.a.a.o.a.l.b #22	ENSGT01100000263475.f.a.e.b.a.b.a.a.a	ENSGT01100000263475.f.a.e.b.a.a.b	ENSGT00940000154876.a.b.b ##24	ENSGT00940000154876.a.b.a.b ##24	ENSGT00970000193421.C.b.i.a #25	ENSGT00940000153377.B.d	ENSGT00940000156574.C.v	ENSGT00390000009899.a.d.p	ENSGT00990000209978.b	ENSGT00390000009663.i.a.b	ENSGT00990000204217.a	ENSGT00390000001802.ib.b	ENSGT00390000014700.b.a.a.b	ENSGT00940000159310.b	ENSGT00940000163759
Goldfish	DUPLICATION
Goldfish	MODERN SPECIES	45	acte1 (ENSCARG00000027820)	shank2b (ENSCARG00000027895)	coq9 (ENSCARG00000028017)	ciapin1 (ENSCARG00000028072)	prmt7 (ENSCARG00000028095)	dbx1b (ENSCARG00000028158)	ENSCARG00000028163	map1lc3b (ENSCARG00000028179)	det1 (ENSCARG00000028213)	ENSCARG00000028236	KLHL25 (ENSCARG00000028265)	ENSCARG00000028275 #19	ENSCARG00000028286 #19	ENSCARG00000028314 ##20	mespbb (ENSCARG00000028542) #21	mespab (ENSCARG00000028545) #22	ENSCARG00000028550	ENSCARG00000028556	ENSCARG00000028562	ENSCARG00000028572	ENSCARG00000028579	ANPEP (ENSCARG00000028590) ##24	anpepb.1 (ENSCARG00000028644) ##24	ap3s2 (ENSCARG00000031020) #25	ENSCARG00000031098	lrp5 (ENSCARG00000031274)	ppp6r3 (ENSCARG00000038045)	ENSCARG00000039150	gal (ENSCARG00000039166)	cox8b (ENSCARG00000039204)	psmd13 (ENSCARG00000039234)
Goldfish	MODERN SPECIES	184														mespbb (ENSCARG00000034029) #21	ENSCARG00000034033	mespab (ENSCARG00000034039) #22	ENSCARG00000034045	ENSCARG00000034065	ENSCARG00000034124
Cyprininae_a	ANCESTRAL SPECIES	73	ENSGT00940000155581.B.e	ENSGT00390000003374.g.b	ENSGT00940000158707.a.b.q.b	ENSGT00940000175810	ENSGT00390000003374.h	ENSGT00940000158707.a.b.r	ENSGT00520000055637.A.b.xb	ENSGT00940000154158.j	ENSGT00390000005224.q	ENSGT00940000155645.j.d ##18	ENSGT00940000160936.c	ENSGT00950000182983.B.b.c	ENSGT00940000154146.b.a.w.a #19	ENSGT00950000182940.b.a.a.g.a.b ##20	ENSGT00530000063712.a.a.o.b.a.b.b #21	ENSGT00530000063712.a.a.o.a.l.b #22	ENSGT01100000263475.f.a.e.b.a.b.a.a.a	ENSGT01100000263475.f.a.e.b.a.a.b	ENSGT00940000154876.a.b.b ##24	ENSGT00940000154876.a.b.a.b ##24	ENSGT00970000193421.C.b.i.b #25	ENSGT00940000153377.B.d	ENSGT00940000156574.C.v	ENSGT00390000009899.a.d.p	ENSGT00990000209978.b	ENSGT00390000009663.i.a.b	ENSGT00990000204217.a	ENSGT00390000001802.ib.b	ENSGT00390000014700.b.a.a.b	ENSGT00940000159310.b	ENSGT00940000163759
Common carp reference	MODERN SPECIES	33	ca5a (ENSCCRG00000058562)	slc7a5 (ENSCCRG00000079372)	klhdc4 (ENSCCRG00000038039)	jph3b (ENSCCRG00000067433)	ZCCHC14 (ENSCCRG00000004005)	map1lc3b (ENSCCRG00000004019)	det1 (ENSCCRG00000040862)	ntrk3a (ENSCCRG00000072351) ##18	ENSCCRG00000069030	KLHL25 (ENSCCRG00000037663)	ENSCCRG00000018929 #19	ENSCCRG00000037242 #19	ENSCCRG00000030842 ##20	mespbb (ENSCCRG00000077122) #21	ENSCCRG00000060820	mespab (ENSCCRG00000041730) #22	ENSCCRG00000041751	ENSCCRG00000054038	ENSCCRG00000041833 ##24	anpepb.1 (ENSCCRG00000056750) ##24	ENSCCRG00000076136 #25	ENSCCRG00000061403	lrp5 (ENSCCRG00000041247)	ppp6r3 (ENSCCRG00000009623)	ENSCCRG00000009613	gal (ENSCCRG00000009596)	psmd13 (ENSCCRG00000019004)	cox8b (ENSCCRG00000009591)	ric8a (ENSCCRG00000009508)	ehf (ENSCCRG00000009504)	ENSCCRG00000059039
Golden-line barbel	MODERN SPECIES	49	ca5a (ENSSGRG00000010758)	slc7a5 (ENSSGRG00000010757)	ENSSGRG00000010756	klhdc4 (ENSSGRG00000010755)	ENSSGRG00000010753	ENSSGRG00000010752	map1lc3b (ENSSGRG00000010720)	det1 (ENSSGRG00000010696)	ntrk3a (ENSSGRG00000010694) ##18	ENSSGRG00000010691	KLHL25 (ENSSGRG00000010690)	ENSSGRG00000010687 #19	ENSSGRG00000010685 #19	ENSSGRG00000010337 ##20	mespbb (ENSSGRG00000010322) #21	mespab (ENSSGRG00000010319) #22	si:dkey-52p2.5 (ENSSGRG00000010317)	ENSSGRG00000010314	ANPEP (ENSSGRG00000007959) ##24	AP3S2 (ENSSGRG00000007847) #25	ENSSGRG00000007842	lrp5 (ENSSGRG00000007824)	lrp5 (ENSSGRG00000007819)	ppp6r3 (ENSSGRG00000007782)	zgc:110339 (ENSSGRG00000007778)	cox8b (ENSSGRG00000007765)	ENSSGRG00000007761	ric8a (ENSSGRG00000007694)	ehf (ENSSGRG00000007691)	carmil3 (ENSSGRG00000007688)	rem2 (ENSSGRG00000007681)
Osteoglossiformes	ANCESTRAL SPECIES	13	ENSGT00950000182772.B.a.b	ENSGT00940000157220.c	ENSGT00940000158881	ENSGT01030000234638.b.b.c.a	ENSGT00940000158927	ENSGT00950000182844.b.b.b.c	ENSGT00940000177011	ENSGT00940000159749	ENSGT00390000015400 #17	ENSGT00940000155645.h #18	ENSGT00940000160936.e	ENSGT00950000182983.B.b.g	ENSGT00940000154146.b.a #19	ENSGT00950000182940.b.a.a.g.a ##20	ENSGT00530000063712.a.a.o.b #21	ENSGT00530000063712.a.a.o.a #22	ENSGT00940000154876.a.a.a.a #24	ENSGT00970000193421.C.b #25	ENSGT00940000164605.c	ENSGT00940000156682.d #26	ENSGT00940000159268	ENSGT00940000157771 #27	ENSGT00940000156205.h.r.b	ENSGT00940000156291.f	ENSGT00940000157540.A.a	ENSGT00940000160583	ENSGT00950000183112.a.a	ENSGT00730000111392.b	ENSGT01030000234535.F.a	ENSGT01080000257410.A.f.l	ENSGT01080000257410.A.f.m
P. kingsleyae	MODERN SPECIES	148									NTRK3 (ENSPKIG00000019993) #18	AGBL1 (ENSPKIG00000020051)	KLHL25 (ENSPKIG00000020095)	si:dkey-172h23.2 (ENSPKIG00000020113) #19	ENSPKIG00000020142 ##19	sv2ba (ENSPKIG00000020160) #20	ENSPKIG00000020187 #21	mespab (ENSPKIG00000020197) #22	ANPEP (ENSPKIG00000020225) ##24	ap3s2 (ENSPKIG00000020282) #25	ENSPKIG00000020299	si:dkey-12e7.1 (ENSPKIG00000020306)	anpeplb (ENSPKIG00000020321)	arpin (ENSPKIG00000020365)	ENSPKIG00000020390	ENSPKIG00000020414 #26	si:ch211-107o10.3 (ENSPKIG00000020473)	tmed3 (ENSPKIG00000020495)	idh2 (ENSPKIG00000020516)	ZNF710 (ENSPKIG00000020562)	SEMA4B (ENSPKIG00000020599)	zgc:162879 (ENSPKIG00000020661)	SERF2 (ENSPKIG00000020684)
Asian bonytongue	DUPLICATION
Asian bonytongue	MODERN SPECIES	2	ckmt1 (ENSSFOG00015018546)	FURIN (ENSSFOG00015018595)	fes (ENSSFOG00015018721)	MAN2A2 (ENSSFOG00015018761)	cib1 (ENSSFOG00015018869)	rhcga (ENSSFOG00015018883)	kif7 (ENSSFOG00015018916)	mrpl46 (ENSSFOG00015028871) #17	NTRK3 (ENSSFOG00015019029) #18	AGBL1 (ENSSFOG00015019065)	KLHL25 (ENSSFOG00015019111)	ENSSFOG00015019124 #19	ENSSFOG00015019161 #19	ENSSFOG00015019172 ##20	mespba (ENSSFOG00015019234) #21	mespaa (ENSSFOG00015019242) #22	ANPEP (ENSSFOG00015019256) #24	ap3s2 (ENSSFOG00015026735) #25	ENSSFOG00015019305	ENSSFOG00015019417 #26	ENSSFOG00015028186	LRRC28 (ENSSFOG00015019484) #27	mef2aa (ENSSFOG00015019521)	MCTP2 (ENSSFOG00015019584)	nr2f2 (ENSSFOG00015019658)	lysmd4 (ENSSFOG00015032617)	rgma (ENSSFOG00015027403)	st8sia2 (ENSSFOG00015019731)	SLCO3A1 (ENSSFOG00015019746)	si:dkeyp-59c12.1 (ENSSFOG00015019777)	gnrhr4 (ENSSFOG00015019796) #8
Asian bonytongue	MODERN SPECIES	22	klhdc4 (ENSSFOG00015023633)	jph3b (ENSSFOG00015029406)	ENSSFOG00015023627	map1lc3b (ENSSFOG00015023622)	det1 (ENSSFOG00015023617)	mrps11 (ENSSFOG00015033148) #16	ENSSFOG00015024061	NTRK3 (ENSSFOG00015023611) #18	ENSSFOG00015031968	AGBL1 (ENSSFOG00015023599)	KLHL25 (ENSSFOG00015023594)	si:dkey-172h23.2 (ENSSFOG00015023589) #19	ENSSFOG00015031255 #19	sv2ba (ENSSFOG00015023573) #20	ENSSFOG00015023570	mespab (ENSSFOG00015023565) #22	ANPEP (ENSSFOG00015023559) ##24	si:dkey-12e7.1 (ENSSFOG00015023553)	ANPEP (ENSSFOG00015023549) ##24	arpin (ENSSFOG00015023543)	ENSSFOG00015023541	IGF1R (ENSSFOG00015023531) #26	ENSSFOG00015023528	synm (ENSSFOG00015023524)	mef2aa (ENSSFOG00015023515)	MCTP2 (ENSSFOG00015023497)	nr2f2 (ENSSFOG00015011087)	ENSSFOG00015023484	exoc3l1 (ENSSFOG00015023472)	coq9 (ENSSFOG00015023467)	polr2c (ENSSFOG00015028818)