Cichlidae	ANCESTRAL SPECIES	11	ENSGT01050000244841.A.a.b.qb.a.b	ENSGT00390000009312.b	ENSGT00550000074815 #7	ENSGT00390000002211 #8	ENSGT00940000154928.c.a.a #9	ENSGT00940000155500.e #10	ENSGT00950000183149.C.a #11	ENSGT00940000159082 #13	ENSGT00390000016068 #14	ENSGT00390000015400 #15	ENSGT00940000155645.i.b #16	ENSGT00940000154146.b.a.m.b #18	ENSGT00940000154146.b.a.m.a #19	ENSGT00950000182940.b.a.a.g.b #20	ENSGT00530000063712.a.a.o.b #21	ENSGT00530000063712.a.a.o.a #22	ENSGT00940000154876.a.a.a.b #23	ENSGT00940000154876.a.a.a.a #24	ENSGT00970000193421.C.b #25	ENSGT00940000156682.e.a #26	ENSGT00940000157771 #27	ENSGT00950000182843.a.a.a.b.a.a.a.b #28	ENSGT00390000001424.wb.b #29	ENSGT00390000000860.a #30	ENSGT00940000156052.k.a #31	ENSGT00940000158358.b #33	ENSGT00930000151452 #34	ENSGT00390000014907.A	ENSGT00950000183037.A.a #35	ENSGT00390000016435.g.b #36	ENSGT00940000157431.c.b #37
Pseudocrenilabrinae	ANCESTRAL SPECIES	13	ENSGT01050000244841.A.a.b.qb.a.b	ENSGT00390000009312.b	ENSGT00550000074815 #7	ENSGT00390000002211 #8	ENSGT00940000154928.c.a.a #9	ENSGT00940000155500.e #10	ENSGT00950000183149.C.a #11	ENSGT00940000159082 #13	ENSGT00390000016068 #14	ENSGT00390000015400 #15	ENSGT00940000155645.i.b #16	ENSGT00940000154146.b.a.m.b #18	ENSGT00940000154146.b.a.m.a #19	ENSGT00950000182940.b.a.a.g.b #20	ENSGT00530000063712.a.a.o.b #21	ENSGT00530000063712.a.a.o.a #22	ENSGT00940000154876.a.a.a.b #23	ENSGT00940000154876.a.a.a.a #24	ENSGT00970000193421.C.b #25	ENSGT00940000156682.e.a #26	ENSGT00940000157771 #27	ENSGT00950000182843.a.a.a.b.a.a.a.b #28	ENSGT00390000001424.wb.b #29	ENSGT00390000000860.a #30	ENSGT00940000156052.k.a #31	ENSGT00940000158358.b.o.b #33	ENSGT00940000158358.b.o.a #32	ENSGT00930000151452 #34	ENSGT00390000014907.A	ENSGT00950000183037.A.a #35	ENSGT00390000016435.g.b #36
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	13	ENSGT01050000244841.A.a.b.qb.a.b	ENSGT00390000009312.b	ENSGT00550000074815 #7	ENSGT00390000002211 #8	ENSGT00940000154928.c.a.a #9	ENSGT00940000155500.e #10	ENSGT00950000183149.C.a #11	ENSGT00940000159082 #13	ENSGT00390000016068 #14	ENSGT00390000015400 #15	ENSGT00940000155645.i.b #16	ENSGT00940000154146.b.a.m.b #18	ENSGT00940000154146.b.a.m.a #19	ENSGT00950000182940.b.a.a.g.b #20	ENSGT00530000063712.a.a.o.b #21	ENSGT00530000063712.a.a.o.a #22	ENSGT00940000154876.a.a.a.b #23	ENSGT00940000154876.a.a.a.a #24	ENSGT00970000193421.C.b #25	ENSGT00940000156682.e.a #26	ENSGT00940000157771 #27	ENSGT00950000182843.a.a.a.b.a.a.a.b #28	ENSGT00390000001424.wb.b #29	ENSGT00390000000860.a #30	ENSGT00940000156052.k.a #31	ENSGT00940000158358.b.o.b #33	ENSGT00930000151452 #34	ENSGT00390000014907.A	ENSGT00950000183037.A.a #35	ENSGT00390000016435.g.b #36	ENSGT00940000157431.c.b #37
Haplochromini	ANCESTRAL SPECIES	11	ENSGT01050000244841.A.a.b.qb.a.b	ENSGT00390000009312.b	ENSGT00550000074815 #7	ENSGT00390000002211 #8	ENSGT00940000154928.c.a.a #9	ENSGT00940000155500.e #10	ENSGT00950000183149.C.a #11	ENSGT00940000159082 #13	ENSGT00390000016068 #14	ENSGT00390000015400 #15	ENSGT00940000155645.i.b #16	ENSGT00940000154146.b.a.m.b #18	ENSGT00940000154146.b.a.m.a #19	ENSGT00950000182940.b.a.a.g.b #20	ENSGT00530000063712.a.a.o.b #21	ENSGT00530000063712.a.a.o.a #22	ENSGT00940000154876.a.a.a.b #23	ENSGT00940000154876.a.a.a.a #24	ENSGT00970000193421.C.b #25	ENSGT00940000156682.e.a #26	ENSGT00940000157771 #27	ENSGT00950000182843.a.a.a.b.a.a.a.b #28	ENSGT00390000001424.wb.b #29	ENSGT00390000000860.a #30	ENSGT00940000156052.k.a #31	ENSGT00940000158358.b.o.b #33	ENSGT00940000158358.b.p ##33	ENSGT00930000151452 #34	ENSGT00390000014907.A	ENSGT00950000183037.A.a #35	ENSGT00390000016435.g.b #36
Haplochromini_A	ANCESTRAL SPECIES	10	ENSGT00390000009312.b	ENSGT00550000074815 #7	ENSGT00390000002211 #8	ENSGT00940000154928.c.a.a #9	ENSGT00940000155500.e #10	ENSGT00950000183149.C.a #11	ENSGT00940000159082 #13	ENSGT00390000016068 #14	ENSGT00390000015400 #15	ENSGT00940000155645.i.b #16	ENSGT00940000160789.D.b.b #17	ENSGT00940000154146.b.a.m.b #18	ENSGT00940000154146.b.a.m.a #19	ENSGT00950000182940.b.a.a.g.b #20	ENSGT00530000063712.a.a.o.b #21	ENSGT00530000063712.a.a.o.a #22	ENSGT00940000154876.a.a.a.b #23	ENSGT00940000154876.a.a.a.a #24	ENSGT00970000193421.C.b #25	ENSGT00940000156682.e.a #26	ENSGT00940000157771 #27	ENSGT00950000182843.a.a.a.b.a.a.a.b #28	ENSGT00390000001424.wb.b #29	ENSGT00390000000860.a #30	ENSGT00940000156052.k.a #31	ENSGT00940000158358.b.o.b #33	ENSGT00940000158358.b.o.a #32	ENSGT00940000158358.b.p ##33	ENSGT00930000151452 #34	ENSGT00390000014907.A	ENSGT00950000183037.A.a #35
P. nyererei	MODERN SPECIES	320	eprs1 (ENSPNYG00000007931) #7	TDP1 (ENSPNYG00000007981) #8	hmbox1a (ENSPNYG00000008008) #9	KIF13B (ENSPNYG00000008080) #10	ENSPNYG00000008291 #11	ENSPNYG00000008354 #12	PDPR (ENSPNYG00000008380) #13	mrps11 (ENSPNYG00000008428) #14	mrpl46 (ENSPNYG00000008444) #15	NTRK3 (ENSPNYG00000008457) #16	ENSPNYG00000008492 #17	ENSPNYG00000008515 #18	ENSPNYG00000008614 #19	sv2ba (ENSPNYG00000008670) #20	mespba (ENSPNYG00000008860) #21	mespaa (ENSPNYG00000008885) #22	ANPEP (ENSPNYG00000008900) #23	ANPEP (ENSPNYG00000009033) #24	ap3s2 (ENSPNYG00000009379) #25	igf1rb (ENSPNYG00000009411) #26	LRRC28 (ENSPNYG00000009471) #27	SNAP25 (ENSPNYG00000009503) #28	cox5aa (ENSPNYG00000009523) #29	fam219b (ENSPNYG00000009543) #30	ENSPNYG00000009560 #31	ENSPNYG00000009587 #32	ENSPNYG00000009620 #33	ENSPNYG00000009641 #34	cyp1a (ENSPNYG00000009659) #35	edc3 (ENSPNYG00000009669) #36	CSK (ENSPNYG00000009686) #37
Haplochromini_B	ANCESTRAL SPECIES	3	ENSGT00390000009312.b	ENSGT00550000074815 #7	ENSGT00390000002211 #8	ENSGT00940000154928.c.a.a #9	ENSGT00940000155500.e #10	ENSGT00950000183149.C.a #11	ENSGT00940000159082 #13	ENSGT00390000016068 #14	ENSGT00390000015400 #15	ENSGT00940000155645.i.b #16	ENSGT00940000160789.D.b.b #17	ENSGT00940000154146.b.a.m.b #18	ENSGT00940000154146.b.a.m.a #19	ENSGT00950000182940.b.a.a.g.b #20	ENSGT00530000063712.a.a.o.b #21	ENSGT00530000063712.a.a.o.a #22	ENSGT00940000154876.a.a.a.b #23	ENSGT00940000154876.a.a.a.a #24	ENSGT00970000193421.C.b #25	ENSGT00940000156682.e.a #26	ENSGT00940000157771 #27	ENSGT00950000182843.a.a.a.b.a.a.a.b #28	ENSGT00390000001424.wb.b #29	ENSGT00390000000860.a #30	ENSGT00940000156052.k.a #31	ENSGT00940000158358.b.o.b #33	ENSGT00940000158358.b.o.a #32	ENSGT00940000158358.b.p ##33	ENSGT00930000151452 #34	ENSGT00390000014907.A	ENSGT00950000183037.A.a #35
Eastern happy	MODERN SPECIES		KIF13B (ENSACLG00000020030) #10	ENSACLG00000020014 #11	ENSACLG00000019996 ##12	PDPR (ENSACLG00000019932) #13	mrps11 (ENSACLG00000019910) #14	ENSACLG00000019896	mrpl46 (ENSACLG00000019884) #15	ENSACLG00000019876	ENSACLG00000019849	NTRK3 (ENSACLG00000019754) #16	ENSACLG00000019740	ENSACLG00000019721 #18	ENSACLG00000019669 #19	sv2ba (ENSACLG00000019613) #20	mespba (ENSACLG00000019604) #21	mespaa (ENSACLG00000019590) #22	ANPEP (ENSACLG00000019551) #23	ANPEP (ENSACLG00000019501) #24	ap3s2 (ENSACLG00000019469) #25	igf1rb (ENSACLG00000019368) #26	LRRC28 (ENSACLG00000019309) #27	SNAP25 (ENSACLG00000019266) #28	cox5aa (ENSACLG00000019070) #29	fam219b (ENSACLG00000019012) #30	ENSACLG00000018973 #31	ENSACLG00000018954 #33	ENSACLG00000018905 #32	ENSACLG00000018849 ##33	ENSACLG00000018843 #34	ENSACLG00000018838	cyp1a (ENSACLG00000018791) #35
Zebra mbuna	MODERN SPECIES	1091	eprs1 (ENSMZEG00005004950) #7	TDP1 (ENSMZEG00005005003) #8	hmbox1a (ENSMZEG00005005042) #9	KIF13B (ENSMZEG00005005077) #10	ENSMZEG00005005091 #11	ENSMZEG00005005097	PDPR (ENSMZEG00005005109) #13	mrps11 (ENSMZEG00005005157) #14	mrpl46 (ENSMZEG00005005163) #15	NTRK3 (ENSMZEG00005005176) #16	ENSMZEG00005005212 #17	ENSMZEG00005005234 #18	ENSMZEG00005005313 #19	sv2ba (ENSMZEG00005005328) #20	mespba (ENSMZEG00005005392) #21	mespaa (ENSMZEG00005005402) #22	ANPEP (ENSMZEG00005005427) #23	ANPEP (ENSMZEG00005005456) #24	ap3s2 (ENSMZEG00005005493) #25	igf1rb (ENSMZEG00005005511) #26	LRRC28 (ENSMZEG00005005532) #27	SNAP25 (ENSMZEG00005005539) #28	cox5aa (ENSMZEG00005005551) #29	fam219b (ENSMZEG00005005569) #30	ENSMZEG00005005588 #31	ENSMZEG00005005603 #33	ENSMZEG00005005614 #32	ENSMZEG00005005619 ##33	ENSMZEG00005005625 #34	ENSMZEG00005005633	cyp1a (ENSMZEG00005005645) #35
Burton s mouthbrooder	MODERN SPECIES	272	ENSHBUG00000019475	GLO1 (ENSHBUG00000019502)	eprs1 (ENSHBUG00000019547) #7	TDP1 (ENSHBUG00000019614) #8	hmbox1a (ENSHBUG00000019655) #9	KIF13B (ENSHBUG00000019693) #10	ENSHBUG00000019705 #11	PDPR (ENSHBUG00000019777) #13	mrps11 (ENSHBUG00000019804) #14	mrpl46 (ENSHBUG00000019818) #15	NTRK3 (ENSHBUG00000019944) #16	ENSHBUG00000019973 #18	ENSHBUG00000020054 #19	sv2ba (ENSHBUG00000020149) #20	mespba (ENSHBUG00000020166) #21	mespaa (ENSHBUG00000020178) #22	ANPEP (ENSHBUG00000020203) #23	ANPEP (ENSHBUG00000020312) #24	ap3s2 (ENSHBUG00000020370) #25	igf1rb (ENSHBUG00000020501) #26	LRRC28 (ENSHBUG00000020556) #27	SNAP25 (ENSHBUG00000020586) #28	cox5aa (ENSHBUG00000020595) #29	fam219b (ENSHBUG00000000774) #30	ENSHBUG00000020662 #31	ENSHBUG00000020756 #33	ENSHBUG00000020784 #34	ENSHBUG00000020795	cyp1a (ENSHBUG00000020804) #35	edc3 (ENSHBUG00000020817) #36	CSK (ENSHBUG00000020879) #37
Lyretail cichlid	MODERN SPECIES	290	GLO1 (ENSNBRG00000005981)	eprs1 (ENSNBRG00000006007) #7	TDP1 (ENSNBRG00000006120) #8	hmbox1a (ENSNBRG00000006168) #9	KIF13B (ENSNBRG00000006223) #10	ENSNBRG00000006471 #11	ENSNBRG00000006494 ##12	PDPR (ENSNBRG00000006515) #13	mrps11 (ENSNBRG00000006581) #14	mrpl46 (ENSNBRG00000006597) #15	NTRK3 (ENSNBRG00000006614) #16	ENSNBRG00000006659 #18	ENSNBRG00000006808 #18	sv2ba (ENSNBRG00000006848) #20	mespba (ENSNBRG00000007019) #21	mespaa (ENSNBRG00000007037) #22	ANPEP (ENSNBRG00000007061) #23	ANPEP (ENSNBRG00000007204) #24	ap3s2 (ENSNBRG00000007647) #25	igf1rb (ENSNBRG00000007674) #26	ENSNBRG00000007743	SNAP25 (ENSNBRG00000007751) #28	cox5aa (ENSNBRG00000007764) #29	fam219b (ENSNBRG00000007775) #30	ENSNBRG00000007785 #31	ENSNBRG00000007832 #33	ENSNBRG00000007845 #34	cyp1a (ENSNBRG00000007864) #35	edc3 (ENSNBRG00000007881) #36	CSK (ENSNBRG00000007926) #37	cplx3a (ENSNBRG00000007964)
Nile tilapia	MODERN SPECIES		ENSONIG00000003063	glo1 (ENSONIG00000041239)	eprs1 (ENSONIG00000003054) #7	TDP1 (ENSONIG00000003045) #8	hmbox1a (ENSONIG00000003040) #9	KIF13B (ENSONIG00000003026) #10	ENSONIG00000036476 #11	PDPR (ENSONIG00000003019) #13	mrps11 (ENSONIG00000034606) #14	mrpl46 (ENSONIG00000027702) #15	ENSONIG00000032719	NTRK3 (ENSONIG00000003007) #16	ENSONIG00000003000 #18	sv2ba (ENSONIG00000002992) #20	mespba (ENSONIG00000028668) #21	mespaa (ENSONIG00000038969) #22	ANPEP (ENSONIG00000002988) #23	ANPEP (ENSONIG00000002978) #24	AP3S2 (ENSONIG00000035244) #25	igf1rb (ENSONIG00000002961) #26	LRRC28 (ENSONIG00000002957) #27	SNAP25 (ENSONIG00000002954) #28	cox5aa (ENSONIG00000002953) #29	ENSONIG00000002949 #31	ENSONIG00000042687 #32	ENSONIG00000042922 #34	ENSONIG00000041695	cyp1a (ENSONIG00000041126) #35	edc3 (ENSONIG00000002932) #36	CSK (ENSONIG00000002920) #37	cplx3 (ENSONIG00000029793)
Midas cichlid	MODERN SPECIES	109	eprs1 (ENSACIG00000007907) #7	ENSACIG00000007894	TDP1 (ENSACIG00000007821) #8	hmbox1a (ENSACIG00000007797) #9	ENSACIG00000007745 #10	ENSACIG00000007733 #11	ENSACIG00000007729 #13	PDPR (ENSACIG00000007693) #13	mrps11 (ENSACIG00000007679) #14	mrpl46 (ENSACIG00000007620) #15	NTRK3 (ENSACIG00000007582) #16	ENSACIG00000007493 #18	ENSACIG00000007473 #19	sv2ba (ENSACIG00000007439) #20	mespba (ENSACIG00000007425) #21	mespaa (ENSACIG00000007411) #22	ANPEP (ENSACIG00000007161) #23	ANPEP (ENSACIG00000007083) #24	ap3s2 (ENSACIG00000007071) #25	ENSACIG00000007062	igf1rb (ENSACIG00000007009) #26	LRRC28 (ENSACIG00000006973) #27	SNAP25 (ENSACIG00000006954) #28	COX5A (ENSACIG00000006936) #29	fam219b (ENSACIG00000006913) #30	ENSACIG00000006888 #31	ENSACIG00000006859	ENSACIG00000006828 #34	ENSACIG00000006809	cyp1a (ENSACIG00000005416) #35	edc3 (ENSACIG00000005330) #36