Eutheria DUPLICATION Eutheria ANCESTRAL SPECIES 7 ENSGT00390000008742 ENSGT00940000157487 ENSGT00390000002374 ENSGT00940000153434.a.a ENSGT00940000161055 ENSGT00390000016025.a ENSGT00940000155181 ENSGT00940000157707 ENSGT00390000002445 ENSGT00530000063675.b ENSGT00940000164141 ENSGT00490000043385 ENSGT00940000156859 ENSGT00390000001195.a ENSGT00940000153424.a.b ENSGT00940000153321.b.b.l.a #22 ENSGT00390000015513.a.a.b #34 ENSGT00390000015513.a.a.a #33 ENSGT00940000155211 #32 ENSGT00390000016390 #31 ENSGT00940000159011 #30 ENSGT00940000161328 #29 ENSGT00390000002550 ENSGT00940000163752 ENSGT00940000160266 #28 ENSGT00940000160237 #27 ENSGT00670000098074 #26 ENSGT00520000055591.b #25 ENSGT00940000156081 #15 ENSGT00950000182925.D.a.a.b.a ENSGT00940000161260 Boreoeutheria ANCESTRAL SPECIES 10 ENSGT00940000157487 ENSGT00390000002374 ENSGT00940000153434.a.a ENSGT00940000161055 ENSGT00390000016025.a ENSGT00940000155181 ENSGT00940000157707 ENSGT00390000002445 ENSGT00530000063675.b ENSGT00940000164141 ENSGT00490000043385 ENSGT00940000156859 ENSGT00390000001195.a ENSGT00940000153424.a.b ENSGT00940000154367.b ENSGT00940000153321.b.b.l.a #22 ENSGT00390000015513.a.a.b #34 ENSGT00390000015513.a.a.a #33 ENSGT00940000155211 #32 ENSGT00390000016390 #31 ENSGT00940000159011 #30 ENSGT00940000161328 #29 ENSGT00390000002550 ENSGT00940000163752 ENSGT00940000160266 #28 ENSGT00940000160237 #27 ENSGT00670000098074 #26 ENSGT00520000055591.b #25 ENSGT00940000168987 ENSGT00940000155950 #24 ENSGT00510000048363 #23 Euarchontoglires ANCESTRAL SPECIES ENSGT00940000153321.b.b.l.a #22 Euarchontoglires_A ANCESTRAL SPECIES ENSGT00940000153321.b.b.l.a #22 Glires ANCESTRAL SPECIES ENSGT00940000153321.b.b.l.a #22 Rodentia ANCESTRAL SPECIES ENSGT00940000153321.b.b.l.a #22 Rodentia_B ANCESTRAL SPECIES ENSGT00940000153321.b.b.l.a #22 Myomorpha ANCESTRAL SPECIES ENSGT00940000153321.b.b.l.a #22 Muroidea ANCESTRAL SPECIES ENSGT00940000153321.b.b.l.a #22 Muroidea_A ANCESTRAL SPECIES 14 ENSGT01100000263494.a.a.a.a.b.b #13 ENSGT01050000244828.c.b.b.b.c.b #14 ENSGT00940000156081 #15 ENSGT00940000157345.a #16 ENSGT00950000183043.a.b.b.a.b.u.a.a #17 ENSGT00950000183043.a.b.b.a.a.a.a.a.a #18 ENSGT00940000160228 #19 ENSGT00530000069333.a #20 ENSGT00940000159128 #21 ENSGT00940000153321.b.b.l.a #22 ENSGT00940000154367.a ENSGT00510000048363 #23 ENSGT00940000155950 #24 ENSGT00520000055591.b #25 ENSGT00670000098074 #26 ENSGT00940000160237 #27 ENSGT00940000160266 #28 ENSGT00940000161328 #29 ENSGT00940000159011 #30 ENSGT00390000016390 #31 ENSGT00940000155211 #32 ENSGT00390000015513.a.a.a #33 ENSGT00390000015513.a.a.b #34 ENSGT00940000153321.b.b.l.b.b.a.b #36 ENSGT00940000153321.b.b.l.b.b.a.a.b #37 Murinae ANCESTRAL SPECIES 21 ENSGT01100000263494.a.a.a.a.b.b #13 ENSGT01050000244828.c.b.b.b.c.b #14 ENSGT00940000156081 #15 ENSGT00940000157345.a #16 ENSGT00950000183043.a.b.b.a.b.u.a.a #17 ENSGT00950000183043.a.b.b.a.a.a.a.a.a #18 ENSGT00940000160228 #19 ENSGT00530000069333.a #20 ENSGT00940000159128 #21 ENSGT00940000153321.b.b.l.a #22 ENSGT00940000154367.a ENSGT00510000048363 #23 ENSGT00940000155950 #24 ENSGT00520000055591.b #25 ENSGT00670000098074 #26 ENSGT00940000160237 #27 ENSGT00940000160266 #28 ENSGT00940000161328 #29 ENSGT00940000159011 #30 ENSGT00390000016390 #31 ENSGT00940000155211 #32 ENSGT00390000015513.a.a.a #33 ENSGT00390000015513.a.a.b #34 ENSGT00940000153321.b.b.l.b.b.a.b #36 ENSGT00940000153321.b.b.l.b.b.a.a.b.b #37 Mus ANCESTRAL SPECIES 18 ENSGT00940000155274.a.b.c.b #8 ENSGT00530000063576.B #9 ENSGT00390000005801 #10 ENSGT00390000012916.t #11 ENSGT00940000162284.e.b.a #12 ENSGT01100000263494.a.a.a.a.b.b #13 ENSGT01050000244828.c.b.b.b.c.b #14 ENSGT00940000156081 #15 ENSGT00940000157345.a #16 ENSGT00950000183043.a.b.b.a.b.u.a.a #17 ENSGT00950000183043.a.b.b.a.a.a.a.a.a #18 ENSGT00940000160228 #19 ENSGT00530000069333.a #20 ENSGT00940000159128 #21 ENSGT00940000153321.b.b.l.a #22 ENSGT00940000154367.a ENSGT00510000048363 #23 ENSGT00940000155950 #24 ENSGT00520000055591.b #25 ENSGT00670000098074 #26 ENSGT00940000160237 #27 ENSGT00940000160266 #28 ENSGT00940000161328 #29 ENSGT00940000159011 #30 ENSGT00390000016390 #31 ENSGT00940000155211 #32 ENSGT00390000015513.a.a.a #33 ENSGT00390000015513.a.a.b #34 ENSGT00940000153321.b.b.l.b.b.a.b.b #35 ENSGT00940000153321.b.b.l.b.b.a.b.a #36 Mus_A ANCESTRAL SPECIES 14 ENSGT00940000153165.a.a.c.a.h #7 ENSGT00940000155274.a.b.c.b #8 ENSGT00530000063576.B #9 ENSGT00390000005801 #10 ENSGT00390000012916.t #11 ENSGT00940000162284.e.b.a #12 ENSGT01100000263494.a.a.a.a.b.b #13 ENSGT01050000244828.c.b.b.b.c.b #14 ENSGT00940000156081 #15 ENSGT00940000157345.a #16 ENSGT00950000183043.a.b.b.a.b.u.a.a #17 ENSGT00950000183043.a.b.b.a.a.a.a.a.a #18 ENSGT00940000160228 #19 ENSGT00530000069333.a #20 ENSGT00940000159128 #21 ENSGT00940000153321.b.b.l.a #22 ENSGT00510000048363 #23 ENSGT00940000155950 #24 ENSGT00520000055591.b #25 ENSGT00670000098074 #26 ENSGT00940000160237 #27 ENSGT00940000160266 #28 ENSGT00940000161328 #29 ENSGT00940000159011 #30 ENSGT00390000016390 #31 ENSGT00940000155211 #32 ENSGT00390000015513.a.a.a #33 ENSGT00390000015513.a.a.b #34 ENSGT00940000153321.b.b.l.b.b.a.b.b #35 ENSGT00940000153321.b.b.l.b.b.a.b.a #36 ENSGT00940000153321.b.b.l.b.b.a.a.b.b #37 Mus_B ANCESTRAL SPECIES 13 ENSGT00390000005801 #10 ENSGT00390000011190.y.a ENSGT00390000012916.t #11 ENSGT00940000162111.d ENSGT00860000136162 ENSGT00940000162284.e.b.a #12 ENSGT01100000263494.a.a.a.a.b.b #13 ENSGT01050000244828.c.b.b.b.c.b #14 ENSGT00940000156081 #15 ENSGT00940000157345.a #16 ENSGT00950000183043.a.b.b.a.b.u.a.a #17 ENSGT00950000183043.a.b.b.a.a.a.a.a.a #18 ENSGT00940000160228 #19 ENSGT00530000069333.a #20 ENSGT00940000159128 #21 ENSGT00940000153321.b.b.l.a #22 ENSGT00510000048363 #23 ENSGT00940000155950 #24 ENSGT00520000055591.b #25 ENSGT00670000098074 #26 ENSGT00940000160237 #27 ENSGT00940000160266 #28 ENSGT00940000161328 #29 ENSGT00940000159011 #30 ENSGT00390000016390 #31 ENSGT00940000155211 #32 ENSGT00390000015513.a.a.a #33 ENSGT00390000015513.a.a.b #34 ENSGT00940000153321.b.b.l.b.b.a.b.b #35 ENSGT00940000153321.b.b.l.b.b.a.b.a #36 ENSGT00940000153321.b.b.l.b.b.a.a.b.b #37 Mus_C ANCESTRAL SPECIES 10 ENSGT00390000005801 #10 ENSGT00390000011190.y.a ENSGT00390000012916.t #11 ENSGT00940000162111.d ENSGT00860000136162 ENSGT00940000162284.e.b.a #12 ENSGT01100000263494.a.a.a.a.b.b #13 ENSGT01050000244828.c.b.b.b.c.b #14 ENSGT00940000156081 #15 ENSGT00940000157345.a #16 ENSGT00950000183043.a.b.b.a.b.u.a.a #17 ENSGT00950000183043.a.b.b.a.a.a.a.a.a #18 ENSGT00940000160228 #19 ENSGT00530000069333.a #20 ENSGT00940000159128 #21 ENSGT00940000153321.b.b.l.a #22 ENSGT00510000048363 #23 ENSGT00940000155950 #24 ENSGT00520000055591.b #25 ENSGT00670000098074 #26 ENSGT00940000160237 #27 ENSGT00940000160266 #28 ENSGT00940000161328 #29 ENSGT00940000159011 #30 ENSGT00390000016390 #31 ENSGT00940000155211 #32 ENSGT00390000015513.a.a.a #33 ENSGT00390000015513.a.a.b #34 ENSGT00940000153321.b.b.l.b.b.a.b.b #35 ENSGT00940000153321.b.b.l.b.b.a.b.a #36 ENSGT00940000153321.b.b.l.b.b.a.a.b.b #37 spretus MODERN SPECIES 4 MGP_SPRETEiJ_G0019537 Mterf3 (MGP_SPRETEiJ_G0019536) #10 Gm10767 (MGP_SPRETEiJ_G0019535) Uqcrb (MGP_SPRETEiJ_G0019534) #11 MGP_SPRETEiJ_G0019533 Gm10775 (MGP_SPRETEiJ_G0019532) Or9s18 (MGP_SPRETEiJ_G0019531) #13 Or14p1 (MGP_SPRETEiJ_G0019530) #14 Mfsd14b (MGP_SPRETEiJ_G0019529) #15 Prss47 (MGP_SPRETEiJ_G0019528) #16 Spata31d1c (MGP_SPRETEiJ_G0019527) #17 Spata31 (MGP_SPRETEiJ_G0019526) #18 Cntnap3 (MGP_SPRETEiJ_G0019525) #19 Fam240b (MGP_SPRETEiJ_G0019524) #20 Cdk20 (MGP_SPRETEiJ_G0019523) #21 Ctsl (MGP_SPRETEiJ_G0019522) #22 Prxl2c (MGP_SPRETEiJ_G0019521) #23 Cdc14b (MGP_SPRETEiJ_G0019520) #24 Habp4 (MGP_SPRETEiJ_G0019519) #25 Zfp367 (MGP_SPRETEiJ_G0019518) #26 Slc35d2 (MGP_SPRETEiJ_G0019517) #27 Hsd17b3 (MGP_SPRETEiJ_G0019516) #28 MGP_SPRETEiJ_G0019515 #29 Ptch1 (MGP_SPRETEiJ_G0019514) #30 Fancc (MGP_SPRETEiJ_G0019513) #31 Aopep (MGP_SPRETEiJ_G0019512) #32 Fbp1 (MGP_SPRETEiJ_G0019511) #33 Fbp2 (MGP_SPRETEiJ_G0019510) #34 MGP_SPRETEiJ_G0019509 #35 Ctsm (MGP_SPRETEiJ_G0019508) #36 Cts7 (MGP_SPRETEiJ_G0019507) #37 Steppe mouse MODERN SPECIES 3039 Nlrp4f (ENSMSIG00000021800) #12 Or9s18 (ENSMSIG00000021783) #13 Or14p1 (ENSMSIG00000021778) #14 ENSMSIG00000021775 Mfsd14b (ENSMSIG00000021759) #15 ENSMSIG00000021748 #16 Spata31d1c (ENSMSIG00000021735) #17 ENSMSIG00000021729 Spata31 (ENSMSIG00000021723) #18 ENSMSIG00000021707 Cntnap3 (ENSMSIG00000021683) #19 ENSMSIG00000021657 ENSMSIG00000021654 Fam240b (ENSMSIG00000021651) #20 Cdk20 (ENSMSIG00000021605) #21 Ctsl (ENSMSIG00000021593) #22 Prxl2c (ENSMSIG00000021569) #23 ENSMSIG00000021554 Cdc14b (ENSMSIG00000021401) #24 Habp4 (ENSMSIG00000021366) #25 Zfp367 (ENSMSIG00000021336) #26 Slc35d2 (ENSMSIG00000021264) #27 Hsd17b3 (ENSMSIG00000021249) #28 ENSMSIG00000021243 Ercc6l2 (ENSMSIG00000021038) #29 Ptch1 (ENSMSIG00000020849) #30 Mouse MODERN SPECIES 4 Gm10772 (ENSMUSG00000091347) Zfp997 (ENSMUSG00000095909) Gm10139 (ENSMUSG00000063905) Zfp369 (ENSMUSG00000021514) Gm10775 (ENSMUSG00000074847) Nlrp4f (ENSMUSG00000032999) #12 Or9s18 (ENSMUSG00000049806) #13 Or14p1 (ENSMUSG00000108426) #14 Mfsd14b (ENSMUSG00000038212) #15 Prss47 (ENSMUSG00000090658) #16 Spata31d1c (ENSMUSG00000074849) #17 Spata31 (ENSMUSG00000056223) #18 Cntnap3 (ENSMUSG00000033063) #19 Fam240b (ENSMUSG00000096537) #20 Cdk20 (ENSMUSG00000021483) #21 Ctsl (ENSMUSG00000021477) #22 Prxl2c (ENSMUSG00000021482) #23 Cdc14b (ENSMUSG00000033102) #24 Habp4 (ENSMUSG00000021476) #25 Zfp367 (ENSMUSG00000044934) #26 Slc35d2 (ENSMUSG00000033114) #27 Hsd17b3 (ENSMUSG00000033122) #28 Ercc6l2 (ENSMUSG00000021470) #29 Ptch1 (ENSMUSG00000021466) #30 Fancc (ENSMUSG00000021461) #31 Aopep (ENSMUSG00000021458) #32 Fbp1 (ENSMUSG00000069805) #33 Fbp2 (ENSMUSG00000021456) #34 Gm5141 (ENSMUSG00000091183) Platr25 (ENSMUSG00000074863) 6720489N17Rik (ENSMUSG00000072066) Ryukyu mouse MODERN SPECIES 4 MGP_CAROLIEiJ_G0018657 #7 Zfp712 (MGP_CAROLIEiJ_G0018656) #8 Ptdss1 (MGP_CAROLIEiJ_G0018655) #9 Mterf3 (MGP_CAROLIEiJ_G0018654) #10 Uqcrb (MGP_CAROLIEiJ_G0018653) #11 Nlrp4f (MGP_CAROLIEiJ_G0018652) #12 Or9s18 (MGP_CAROLIEiJ_G0018651) #13 Or14p1 (MGP_CAROLIEiJ_G0018650) #14 Mfsd14b (MGP_CAROLIEiJ_G0018649) #15 Prss47 (MGP_CAROLIEiJ_G0018648) #16 Spata31d1c (MGP_CAROLIEiJ_G0018647) #17 Spata31 (MGP_CAROLIEiJ_G0018646) #18 Cntnap3 (MGP_CAROLIEiJ_G0018645) #19 Fam240b (MGP_CAROLIEiJ_G0018644) #20 Cdk20 (MGP_CAROLIEiJ_G0018643) #21 Ctsl (MGP_CAROLIEiJ_G0018642) #22 Prxl2c (MGP_CAROLIEiJ_G0018641) #23 Cdc14b (MGP_CAROLIEiJ_G0018640) #24 Habp4 (MGP_CAROLIEiJ_G0018639) #25 Zfp367 (MGP_CAROLIEiJ_G0018638) #26 Slc35d2 (MGP_CAROLIEiJ_G0018637) #27 Hsd17b3 (MGP_CAROLIEiJ_G0018636) #28 MGP_CAROLIEiJ_G0018635 #29 Ptch1 (MGP_CAROLIEiJ_G0018634) #30 Fancc (MGP_CAROLIEiJ_G0018633) #31 Aopep (MGP_CAROLIEiJ_G0018632) #32 Fbp1 (MGP_CAROLIEiJ_G0018631) #33 Fbp2 (MGP_CAROLIEiJ_G0018630) #34 MGP_CAROLIEiJ_G0018629 #35 Ctsm (MGP_CAROLIEiJ_G0018628) #36 Cts7 (MGP_CAROLIEiJ_G0018627) #37 Cricetidae ANCESTRAL SPECIES 22 ENSGT01100000263494.a.a.a.a.b.b #13 ENSGT01050000244828.c.b.b.b.c.b #14 ENSGT00940000156081 #15 ENSGT00940000157345.a #16 ENSGT00950000183043.a.b.b.a.b.u.a.a #17 ENSGT00950000183043.a.b.b.a.a.a.a.a.a #18 ENSGT00940000160228 #19 ENSGT00530000069333.a #20 ENSGT00940000159128 #21 ENSGT00940000153321.b.b.l.a #22 ENSGT00940000154367.a ENSGT00510000048363 #23 ENSGT00940000155950 #24 ENSGT00520000055591.b #25 ENSGT00670000098074 #26 ENSGT00940000160237 #27 ENSGT00940000160266 #28 ENSGT00940000161328 #29 ENSGT00940000159011 #30 ENSGT00390000016390 #31 ENSGT00940000155211 #32 ENSGT00390000015513.a.a.a #33 ENSGT00390000015513.a.a.b #34 ENSGT00940000153321.b.b.l.b.b.a.b #36 ENSGT00940000153321.b.b.l.b.b.a.a.b #37 Cricetidae_B ANCESTRAL SPECIES 22 ENSGT01100000263494.a.a.a.a.b.b #13 ENSGT01050000244828.c.b.b.b.c.b #14 ENSGT00940000156081 #15 ENSGT00940000157345.a #16 ENSGT00530000069333.a #20 ENSGT00940000159128 #21 ENSGT00940000153321.b.b.l.a #22 ENSGT00940000154367.a ENSGT00510000048363 #23 ENSGT00940000155950 #24 ENSGT00520000055591.b #25 ENSGT00670000098074 #26 ENSGT00940000160237 #27 ENSGT00940000160266 #28 ENSGT00940000161328 #29 ENSGT00940000159011 #30 ENSGT00390000016390 #31 ENSGT00940000155211 #32 ENSGT00390000015513.a.a.a #33 ENSGT00390000015513.a.a.b #34 ENSGT00940000153321.b.b.l.b.b.a.b #36 ENSGT00940000153321.b.b.l.b.b.a.a.b #37 Northern American deer mouse MODERN SPECIES 18 Or9s18 (ENSPEMG00000006716) #13 Or14p1 (ENSPEMG00000000696) #14 Mfsd14b (ENSPEMG00000006359) #15 Prss47 (ENSPEMG00000024096) #16 ENSPEMG00000009179 ##18 ENSPEMG00000025407 Fam240b (ENSPEMG00000020614) #20 Cdk20 (ENSPEMG00000023165) #21 Ctsl (ENSPEMG00000021285) #22 ENSPEMG00000021037 Prxl2c (ENSPEMG00000020672) #23 Cdc14b (ENSPEMG00000020534) #24 ENSPEMG00000021224 #25 Zfp367 (ENSPEMG00000013770) #26 Slc35d2 (ENSPEMG00000021173) #27 Hsd17b3 (ENSPEMG00000021000) #28 ENSPEMG00000006631 #29 Ptch1 (ENSPEMG00000016117) #30 Fancc (ENSPEMG00000022299) #31 Aopep (ENSPEMG00000011169) #32 Fbp1 (ENSPEMG00000020415) #33 Fbp2 (ENSPEMG00000003200) #34 ENSPEMG00000020678 #36 ENSPEMG00000030384 #37 Cricetinae ANCESTRAL SPECIES 20 ENSGT00940000156081 #15 ENSGT00940000157345.a #16 ENSGT00950000183043.a.b.b.a.b.u.a.a #17 ENSGT00950000183043.a.b.b.a.a.a.a.a.a #18 ENSGT00940000160228 #19 ENSGT00530000069333.a #20 ENSGT00940000159128 #21 ENSGT00940000153321.b.b.l.a #22 ENSGT00940000154367.a ENSGT00510000048363 #23 ENSGT00940000155950 #24 ENSGT00520000055591.b #25 ENSGT00670000098074 #26 ENSGT00940000160237 #27 ENSGT00940000160266 #28 ENSGT00940000161328 #29 ENSGT00940000159011 #30 ENSGT00390000016390 #31 ENSGT00940000155211 #32 ENSGT00390000015513.a.a.a #33 ENSGT00390000015513.a.a.b #34 ENSGT00940000153321.b.b.l.b.b.a.a.b #37 ENSGT00940000153321.b.b.l.b.b.a.a.a ##37 Chinese hamster chok1gshd MODERN SPECIES 317 ENSCGRG00001012071 #13 ENSCGRG00001024215 ENSCGRG00001003953 #13 Mfsd14b (ENSCGRG00001016271) #15 Prss47 (ENSCGRG00001011133) #16 ENSCGRG00001000347 ##18 Spata31 (ENSCGRG00001024965) #18 Cntnap3 (ENSCGRG00001012388) #19 Fam240b (ENSCGRG00001020040) #20 Cdk20 (ENSCGRG00001001834) #21 Ctsl (ENSCGRG00001023416) #22 Prxl2c (ENSCGRG00001003859) #23 ENSCGRG00001002667 Cdc14b (ENSCGRG00001019066) #24 Habp4 (ENSCGRG00001025040) #25 Zfp367 (ENSCGRG00001022531) #26 Slc35d2 (ENSCGRG00001020192) #27 Hsd17b3 (ENSCGRG00001009870) #28 ENSCGRG00001022738 #29 ENSCGRG00001008618 Ptch1 (ENSCGRG00001010176) #30 Fancc (ENSCGRG00001013491) #31 Aopep (ENSCGRG00001012713) #32 Fbp1 (ENSCGRG00001009150) #33 Fbp2 (ENSCGRG00001022515) #34 Cts8 (ENSCGRG00001013704) ##37 Rodentia_A ANCESTRAL SPECIES ENSGT00940000153321.b.b.l.a #22 Sciuridae ANCESTRAL SPECIES ENSGT00940000153321.b.b.l.a #22 Marmotini ANCESTRAL SPECIES 67 ENSGT00940000154367.a ENSGT00940000163051 ENSGT00940000153505.a.b.b ENSGT00510000048363 #23 ENSGT00940000155950 #24 ENSGT00520000055591.b #25 ENSGT00670000098074 #26 ENSGT00940000160237 #27 ENSGT00940000160266 #28 ENSGT00940000161328 #29 ENSGT00940000159011 #30 ENSGT00390000016390 #31 ENSGT00940000155211 #32 ENSGT00390000015513.a.a.a #33 ENSGT00390000015513.a.a.b #34 ENSGT00940000153321.b.b.l.a #22 ENSGT01030000234510.a.a.b ENSGT01030000234510.a.a.a.a.a.a ENSGT00390000002368 ENSGT00940000156554 ENSGT00390000000724.c.b ENSGT00510000048187 ENSGT00940000153393.A ENSGT00940000154686 ENSGT00390000018415 ENSGT00390000000781 ENSGT00390000003058.a ENSGT01100000263534.b.k.a.a.b.b.q.b ENSGT00390000007058 ENSGT00940000154639 ENSGT00950000183066.a.b.a.a Marmotini_b ANCESTRAL SPECIES 143 ENSGT00940000161328 #29 ENSGT00940000159011 #30 ENSGT00390000016390 #31 ENSGT00940000155211 #32 ENSGT00390000015513.a.a.a #33 ENSGT00390000015513.a.a.b #34 ENSGT00940000153321.b.b.l.a #22 ENSGT01030000234510.a.a.b ENSGT01030000234510.a.a.a.a.a.a ENSGT00390000002368 ENSGT00940000156554 ENSGT00390000000724.c.b ENSGT00510000048187 ENSGT00940000153393.A ENSGT00940000154686 ENSGT00390000018415 ENSGT00390000000781 ENSGT00390000003058.a ENSGT01100000263534.b.k.a.a.b.b.q.b ENSGT00390000007058 ENSGT00940000154639 ENSGT00950000183066.a.b.a.a Arctic ground squirrel MODERN SPECIES 257 ENSUPAG00010017488 ENSUPAG00010017475 #29 PTCH1 (ENSUPAG00010017414) #30 FANCC (ENSUPAG00010017355) #31 AOPEP (ENSUPAG00010017325) #32 FBP1 (ENSUPAG00010017318) #33 FBP2 (ENSUPAG00010017303) #34 ENSUPAG00010017289 #22 ENSUPAG00010017286 MC2R (ENSUPAG00010017285) MC5R (ENSUPAG00010017280) RNMT (ENSUPAG00010017265) FAM210A (ENSUPAG00010017260) LDLRAD4 (ENSUPAG00010017226) CEP192 (ENSUPAG00010017168) SEH1L (ENSUPAG00010017147) PTPN2 (ENSUPAG00010017133) PSMG2 (ENSUPAG00010017129) CEP76 (ENSUPAG00010017117) SPIRE1 (ENSUPAG00010017020) ENSUPAG00010016938 Alpin marmot MODERN SPECIES 89 CTSV (ENSMMMG00000022033) ENSMMMG00000022038 ZNF782 (ENSMMMG00000022039) ZNF510 (ENSMMMG00000022042) PRXL2C (ENSMMMG00000022044) #23 ENSMMMG00000002227 #24 ENSMMMG00000002250 #25 SLC35D2 (ENSMMMG00000002267) #27 HSD17B3 (ENSMMMG00000002462) #28 ENSMMMG00000002531 #29 PTCH1 (ENSMMMG00000002556) #30 FANCC (ENSMMMG00000002674) #31 AOPEP (ENSMMMG00000002776) #32 FBP1 (ENSMMMG00000002815) #33 FBP2 (ENSMMMG00000002826) #34 ENSMMMG00000002840 #22 MC2R (ENSMMMG00000002896) MC5R (ENSMMMG00000002904) Laurasiatheria ANCESTRAL SPECIES 9 ENSGT00940000157487.ib ENSGT00390000002374 ENSGT00940000153434.a.a ENSGT00940000161055 ENSGT00390000016025.a ENSGT00940000155181 ENSGT00940000157707 ENSGT00390000002445 ENSGT00530000063675.b ENSGT00940000164141 ENSGT00490000043385 ENSGT00940000156859 ENSGT00390000001195.a ENSGT00940000153424.a.b ENSGT00940000154367.b ENSGT00940000153321.b.b.l.a #22 ENSGT00390000015513.a.a.b #34 ENSGT00390000015513.a.a.a #33 ENSGT00940000155211 #32 ENSGT00390000016390 #31 ENSGT00940000159011 #30 ENSGT00940000161328 #29 ENSGT00390000002550 ENSGT00940000163752 ENSGT00940000160266 #28 ENSGT00940000160237 #27 ENSGT00670000098074 #26 ENSGT00520000055591.b #25 ENSGT00940000155950 #24 ENSGT00510000048363 #23 ENSGT00940000153505.a.b.b Laurasiatheria_a ANCESTRAL SPECIES 11 ENSGT00940000157487.ib ENSGT00390000002374 ENSGT00940000153434.a.a ENSGT00940000161055 ENSGT00390000016025.a ENSGT00940000155181 ENSGT00940000157707 ENSGT00390000002445 ENSGT00530000063675.b ENSGT00940000164141 ENSGT00490000043385 ENSGT00940000156859 ENSGT00390000001195.a ENSGT00940000153424.a.b ENSGT00940000154367.b ENSGT00940000153321.b.b.l.a #22 ENSGT00390000015513.a.a.b #34 ENSGT00390000015513.a.a.a #33 ENSGT00940000155211 #32 ENSGT00390000016390 #31 ENSGT00940000159011 #30 ENSGT00940000161328 #29 ENSGT00390000002550 ENSGT00940000163752 ENSGT00940000160266 #28 ENSGT00940000160237 #27 ENSGT00670000098074 #26 ENSGT00520000055591.b #25 ENSGT00940000155950 #24 ENSGT00510000048363 #23 ENSGT00940000153505.a.b.b Laurasiatheria_b ANCESTRAL SPECIES 11 ENSGT00390000008742 ENSGT00940000157487.ib ENSGT00390000002374 ENSGT00940000153434.a.a ENSGT00940000161055 ENSGT00390000016025.a ENSGT00940000155181 ENSGT00940000157707 ENSGT00390000002445 ENSGT00530000063675.b ENSGT00940000164141 ENSGT00490000043385 ENSGT00940000156859 ENSGT00390000001195.a ENSGT00940000153424.a.b ENSGT00940000153321.b.b.l.a #22 ENSGT00390000015513.a.a.b #34 ENSGT00390000015513.a.a.a #33 ENSGT00940000155211 #32 ENSGT00390000016390 #31 ENSGT00940000159011 #30 ENSGT00940000161328 #29 ENSGT00390000002550 ENSGT00940000163752 ENSGT00940000160266 #28 ENSGT00940000160237 #27 ENSGT00670000098074 #26 ENSGT00520000055591.b #25 ENSGT00940000155950 #24 ENSGT00510000048363 #23 ENSGT00940000153505.a.b.b Carnivora DUPLICATION Carnivora ANCESTRAL SPECIES ENSGT00940000153321.b.b.l.a.a #22 Caniformia ANCESTRAL SPECIES ENSGT00940000153321.b.b.l.a.a #22 Caniformia_b ANCESTRAL SPECIES ENSGT00940000153321.b.b.l.a.a #22 Ursidae ANCESTRAL SPECIES ENSGT00940000153321.b.b.l.a.a #22 Giant Panda MODERN SPECIES 8 KIF27 (ENSAMEG00000003891) C9orf64 (ENSAMEG00000003917) HNRNPK (ENSAMEG00000003926) RMI1 (ENSAMEG00000019422) SLC28A3 (ENSAMEG00000003963) NTRK2 (ENSAMEG00000003994) AGTPBP1 (ENSAMEG00000004025) NAA35 (ENSAMEG00000004087) GOLM1 (ENSAMEG00000004131) ENSAMEG00000004136 TUT7 (ENSAMEG00000004148) GAS1 (ENSAMEG00000019430) ENSAMEG00000024576 ENSAMEG00000006710 ENSAMEG00000011406 #22 ENSAMEG00000011432 #22 ENSAMEG00000011466 #34 ENSAMEG00000011494 #33 AOPEP (ENSAMEG00000011525) #32 FANCC (ENSAMEG00000011534) #31 PTCH1 (ENSAMEG00000011568) #30 ERCC6L2 (ENSAMEG00000011657) HSD17B3 (ENSAMEG00000007099) #28 SLC35D2 (ENSAMEG00000012082) #27 ZNF367 (ENSAMEG00000025616) #26 HABP4 (ENSAMEG00000012025) #25 ENSAMEG00000011999 #24 PRXL2C (ENSAMEG00000011995) #23 ZNF782 (ENSAMEG00000024008) ENSAMEG00000030766 ENSAMEG00000006522 Ursus ANCESTRAL SPECIES ENSGT00940000153321.b.b.l.a.a #22 American black bear MODERN SPECIES 9234 ENSUAMG00000001649 #22 Mustelinae ANCESTRAL SPECIES ENSGT00940000153321.b.b.l.a.a #22 Ferret MODERN SPECIES 699 ENSMPUG00000005879 #22 ENSMPUG00000005869 ENSMPUG00000005859 #22 Carnivora ANCESTRAL SPECIES 25 ENSGT00940000157487.ib ENSGT00390000002374 ENSGT00940000153434.a.a ENSGT00940000161055 ENSGT00390000016025.a ENSGT00940000155181 ENSGT00940000157707 ENSGT00390000002445 ENSGT00530000063675.b ENSGT00940000164141 ENSGT00940000164155 ENSGT00490000043385 ENSGT00940000156859 ENSGT00390000001195.a ENSGT00940000153424.a.b ENSGT00940000153321.b.b.l.a.b #22 ENSGT00390000015513.a.a.b #34 ENSGT00390000015513.a.a.a #33 ENSGT00940000155211 #32 ENSGT00390000016390 #31 ENSGT00940000159011 #30 ENSGT00940000161328 #29 ENSGT00940000163752 ENSGT00940000160266 #28 ENSGT00940000160237 #27 ENSGT00670000098074 #26 ENSGT00520000055591.b #25 ENSGT00940000155950 #24 ENSGT00510000048363 #23 ENSGT00940000153505.a.b.b ENSGT00940000163051 Felidae DUPLICATION Felidae ANCESTRAL SPECIES 100 ENSGT00940000153321.b.b.l.a.b.a #22 ENSGT00940000153321.b.b.k.d ##37 Panthera DUPLICATION Panthera DUPLICATION Panthera ANCESTRAL SPECIES 143 ENSGT00940000153321.b.b.l.a.b.a.a.a #22 ENSGT00940000153321.b.b.k.d ##37 Tiger MODERN SPECIES 292 ZNF367 (ENSPTIG00000010773) #26 SLC35D2 (ENSPTIG00000010233) #27 HSD17B3 (ENSPTIG00000009924) #28 ENSPTIG00000009613 ENSPTIG00000009148 #29 PTCH1 (ENSPTIG00000007887) #30 FANCC (ENSPTIG00000007601) #31 ENSPTIG00000007589 #32 AOPEP (ENSPTIG00000007069) #32 FBP1 (ENSPTIG00000006777) #33 FBP2 (ENSPTIG00000006636) #34 ENSPTIG00000006375 ENSPTIG00000006150 ENSPTIG00000005805 ENSPTIG00000005691 #22 ENSPTIG00000005532 #22 ENSPTIG00000005486 ##37 Panthera_a ANCESTRAL SPECIES ENSGT00940000153321.b.b.l.a.b.a.a.a #22 leopard MODERN SPECIES 94 RMI1 (ENSPPRG00000011922) SLC28A3 (ENSPPRG00000009891) NTRK2 (ENSPPRG00000010381) AGTPBP1 (ENSPPRG00000010671) ENSPPRG00000010800 NAA35 (ENSPPRG00000010818) GOLM1 (ENSPPRG00000010855) C9orf153 (ENSPPRG00000010876) ISCA1 (ENSPPRG00000010890) TUT7 (ENSPPRG00000011084) GAS1 (ENSPPRG00000011967) ENSPPRG00000013927 DAPK1 (ENSPPRG00000015066) ENSPPRG00000015243 ENSPPRG00000016997 #22 ENSPPRG00000017238 #22 ENSPPRG00000017460 #22 ENSPPRG00000017508 ##37 ENSPPRG00000017629 ENSPPRG00000017692 FBP2 (ENSPPRG00000017726) #34 FBP1 (ENSPPRG00000017781) #33 AOPEP (ENSPPRG00000018024) #32 FANCC (ENSPPRG00000018311) #31 PTCH1 (ENSPPRG00000019039) #30 ENSPPRG00000019238 #29 HSD17B3 (ENSPPRG00000019886) #28 SLC35D2 (ENSPPRG00000020058) #27 ZNF367 (ENSPPRG00000020267) #26 HABP4 (ENSPPRG00000020486) #25 ENSPPRG00000021098 #24 Panthera ANCESTRAL SPECIES ENSGT00940000153321.b.b.l.a.b.a.a.b #22 Tiger MODERN SPECIES 292 ENSPTIG00000005486 ##37 ENSPTIG00000005532 #22 ENSPTIG00000005691 #22 ENSPTIG00000005805 ENSPTIG00000006150 ENSPTIG00000006375 FBP2 (ENSPTIG00000006636) #34 FBP1 (ENSPTIG00000006777) #33 AOPEP (ENSPTIG00000007069) #32 ENSPTIG00000007589 #32 FANCC (ENSPTIG00000007601) #31 PTCH1 (ENSPTIG00000007887) #30 ENSPTIG00000009148 #29 ENSPTIG00000009613 HSD17B3 (ENSPTIG00000009924) #28 SLC35D2 (ENSPTIG00000010233) #27 ZNF367 (ENSPTIG00000010773) #26 HABP4 (ENSPTIG00000010954) #25 Panthera ANCESTRAL SPECIES ENSGT00940000153321.b.b.l.a.b.a.b #22 Panthera_a ANCESTRAL SPECIES ENSGT00940000153321.b.b.l.a.b.a.b #22 lion MODERN SPECIES 13 C9orf64 (ENSPLOG00000013829) HNRNPK (ENSPLOG00000013759) RMI1 (ENSPLOG00000013722) SLC28A3 (ENSPLOG00000013564) NTRK2 (ENSPLOG00000012890) AGTPBP1 (ENSPLOG00000012669) NAA35 (ENSPLOG00000012557) GOLM1 (ENSPLOG00000012515) C9orf153 (ENSPLOG00000012463) ISCA1 (ENSPLOG00000012377) TUT7 (ENSPLOG00000012055) GAS1 (ENSPLOG00000011897) ENSPLOG00000011853 DAPK1 (ENSPLOG00000011696) ENSPLOG00000011540 ENSPLOG00000010937 #22 ENSPLOG00000010849 ENSPLOG00000010600 ENSPLOG00000010163 FBP2 (ENSPLOG00000010075) #34 FBP1 (ENSPLOG00000010008) #33 AOPEP (ENSPLOG00000009897) #32 FANCC (ENSPLOG00000009864) #31 PTCH1 (ENSPLOG00000009736) #30 ERCC6L2 (ENSPLOG00000009574) ENSPLOG00000009543 HSD17B3 (ENSPLOG00000009419) #28 SLC35D2 (ENSPLOG00000009228) #27 ZNF367 (ENSPLOG00000009156) #26 HABP4 (ENSPLOG00000009107) #25 ENSPLOG00000008892 #24 Cat DUPLICATION Cat MODERN SPECIES 3 ENSFCAG00000009438 ENSFCAG00000044377 #22 Cat MODERN SPECIES 88 ENSFCAG00000005706 #22 ENSFCAG00000026329 ##37 Felidae DUPLICATION Felidae ANCESTRAL SPECIES ENSGT00940000153321.b.b.l.a.b.b.a #22 Cat MODERN SPECIES 244 ZNF367 (ENSFCAG00000015587) #26 SLC35D2 (ENSFCAG00000015586) #27 HSD17B3 (ENSFCAG00000002732) #28 ENSFCAG00000053266 ENSFCAG00000047910 ERCC6L2 (ENSFCAG00000002729) PTCH1 (ENSFCAG00000011205) #30 FANCC (ENSFCAG00000003706) #31 AOPEP (ENSFCAG00000003704) #32 FBP1 (ENSFCAG00000009315) #33 FBP2 (ENSFCAG00000001999) #34 ENSFCAG00000027621 ENSFCAG00000001764 ENSFCAG00000049737 ENSFCAG00000002162 ENSFCAG00000048471 #22 ENSFCAG00000026406 ENSFCAG00000018798 DAPK1 (ENSFCAG00000005098) ENSFCAG00000026842 GAS1 (ENSFCAG00000044322) TUT7 (ENSFCAG00000003491) ISCA1 (ENSFCAG00000003489) ENSFCAG00000041024 GOLM1 (ENSFCAG00000009865) NAA35 (ENSFCAG00000009864) AGTPBP1 (ENSFCAG00000028018) NTRK2 (ENSFCAG00000009081) SLC28A3 (ENSFCAG00000010701) RMI1 (ENSFCAG00000014864) HNRNPK (ENSFCAG00000014862) Panthera ANCESTRAL SPECIES ENSGT00940000153321.b.b.l.a.b.b.a #22 Panthera_a ANCESTRAL SPECIES ENSGT00940000153321.b.b.l.a.b.b.a #22 leopard MODERN SPECIES 94 HABP4 (ENSPPRG00000020486) #25 ZNF367 (ENSPPRG00000020267) #26 SLC35D2 (ENSPPRG00000020058) #27 HSD17B3 (ENSPPRG00000019886) #28 ENSPPRG00000019238 #29 PTCH1 (ENSPPRG00000019039) #30 FANCC (ENSPPRG00000018311) #31 AOPEP (ENSPPRG00000018024) #32 FBP1 (ENSPPRG00000017781) #33 FBP2 (ENSPPRG00000017726) #34 ENSPPRG00000017692 ENSPPRG00000017629 ENSPPRG00000017508 ##37 ENSPPRG00000017460 #22 ENSPPRG00000017238 #22 ENSPPRG00000016997 #22 ENSPPRG00000015243 DAPK1 (ENSPPRG00000015066) ENSPPRG00000013927 GAS1 (ENSPPRG00000011967) TUT7 (ENSPPRG00000011084) ISCA1 (ENSPPRG00000010890) C9orf153 (ENSPPRG00000010876) GOLM1 (ENSPPRG00000010855) NAA35 (ENSPPRG00000010818) ENSPPRG00000010800 AGTPBP1 (ENSPPRG00000010671) NTRK2 (ENSPPRG00000010381) SLC28A3 (ENSPPRG00000009891) RMI1 (ENSPPRG00000011922) HNRNPK (ENSPPRG00000009832) Felidae ANCESTRAL SPECIES ENSGT00940000153321.b.b.l.a.b.b.b #22 Panthera ANCESTRAL SPECIES ENSGT00940000153321.b.b.l.a.b.b.b #22 Panthera_a ANCESTRAL SPECIES ENSGT00940000153321.b.b.l.a.b.b.b #22 leopard MODERN SPECIES 94 SLC28A3 (ENSPPRG00000009891) NTRK2 (ENSPPRG00000010381) AGTPBP1 (ENSPPRG00000010671) ENSPPRG00000010800 NAA35 (ENSPPRG00000010818) GOLM1 (ENSPPRG00000010855) C9orf153 (ENSPPRG00000010876) ISCA1 (ENSPPRG00000010890) TUT7 (ENSPPRG00000011084) GAS1 (ENSPPRG00000011967) ENSPPRG00000013927 DAPK1 (ENSPPRG00000015066) ENSPPRG00000015243 ENSPPRG00000016997 #22 ENSPPRG00000017238 #22 ENSPPRG00000017460 #22 ENSPPRG00000017508 ##37 ENSPPRG00000017629 ENSPPRG00000017692 FBP2 (ENSPPRG00000017726) #34 FBP1 (ENSPPRG00000017781) #33 AOPEP (ENSPPRG00000018024) #32 FANCC (ENSPPRG00000018311) #31 PTCH1 (ENSPPRG00000019039) #30 ENSPPRG00000019238 #29 HSD17B3 (ENSPPRG00000019886) #28 SLC35D2 (ENSPPRG00000020058) #27 ZNF367 (ENSPPRG00000020267) #26 HABP4 (ENSPPRG00000020486) #25 ENSPPRG00000021098 #24 PRXL2C (ENSPPRG00000021166) #23 Caniformia DUPLICATION Caniformia ANCESTRAL SPECIES 29 ENSGT00940000157487.ib ENSGT00390000002374 ENSGT00940000153434.a.a ENSGT00940000161055 ENSGT00390000016025.a ENSGT00940000155181 ENSGT00940000157707 ENSGT00390000002445 ENSGT00530000063675.b ENSGT00940000164141 ENSGT00940000164155 ENSGT00490000043385 ENSGT00940000156859 ENSGT00390000001195.a ENSGT00940000153424.a.b ENSGT00940000153321.b.b.l.a.b.c #22 ENSGT00390000015513.a.a.b #34 ENSGT00390000015513.a.a.a #33 ENSGT00940000155211 #32 ENSGT00390000016390 #31 ENSGT00940000159011 #30 ENSGT00940000161328 #29 ENSGT00940000163752 ENSGT00940000160266 #28 ENSGT00940000160237 #27 ENSGT00670000098074 #26 ENSGT00520000055591.b #25 ENSGT00940000155950 #24 ENSGT00510000048363 #23 ENSGT00940000153505.a.b.b ENSGT00940000163051 Caniformia_b ANCESTRAL SPECIES 32 ENSGT00940000157487.ib ENSGT00390000002374 ENSGT00940000153434.a.a ENSGT00940000161055 ENSGT00390000016025.a ENSGT00940000155181 ENSGT00940000157707 ENSGT00390000002445 ENSGT00530000063675.b ENSGT00940000164141 ENSGT00940000164155 ENSGT00490000043385 ENSGT00940000156859 ENSGT00390000001195.a ENSGT00940000153424.a.b ENSGT00940000153321.b.b.l.a.b.c #22 ENSGT00940000154367.b.n ENSGT00390000015513.a.a.b #34 ENSGT00390000015513.a.a.a #33 ENSGT00940000155211 #32 ENSGT00390000016390 #31 ENSGT00940000159011 #30 ENSGT00940000161328 #29 ENSGT00940000163752 ENSGT00940000160266 #28 ENSGT00940000160237 #27 ENSGT00670000098074 #26 ENSGT00520000055591.b #25 ENSGT00940000155950 #24 ENSGT00510000048363 #23 ENSGT00940000153505.a.b.b Ursidae ANCESTRAL SPECIES 43 ENSGT00940000157487.ib ENSGT00390000002374 ENSGT00940000153434.a.a ENSGT00940000161055 ENSGT00390000016025.a ENSGT00940000155181 ENSGT00940000157707 ENSGT00390000002445 ENSGT00530000063675.b ENSGT00940000164141 ENSGT00490000043385 ENSGT00940000156859 ENSGT00390000001195.a ENSGT01000000221508 ENSGT00940000153424.a.b ENSGT00940000153321.b.b.l.a.b.c #22 ENSGT00940000154367.b.n ENSGT00390000015513.a.a.b #34 ENSGT00390000015513.a.a.a #33 ENSGT00940000155211 #32 ENSGT00390000016390 #31 ENSGT00940000159011 #30 ENSGT00940000163752 ENSGT00940000160266.e #28 ENSGT00940000160237 #27 ENSGT00670000098074 #26 ENSGT00520000055591.b #25 ENSGT00940000155950 #24 ENSGT00510000048363 #23 ENSGT00940000153505.a.b.b ENSGT00940000163051 Ursus ANCESTRAL SPECIES ENSGT00940000153321.b.b.l.a.b.c #22 Polar bear MODERN SPECIES 465 ENSUMAG00000007595 DAPK1 (ENSUMAG00000007670) ENSUMAG00000008185 ENSUMAG00000008238 #22 ENSUMAG00000008543 FBP2 (ENSUMAG00000008547) #34 FBP1 (ENSUMAG00000008553) #33 AOPEP (ENSUMAG00000008563) #32 ENSUMAG00000008576 ENSUMAG00000008590 #32 FANCC (ENSUMAG00000008614) #31 PTCH1 (ENSUMAG00000008813) #30 ERCC6L2 (ENSUMAG00000009823) HSD17B3 (ENSUMAG00000009841) #28 SLC35D2 (ENSUMAG00000009849) #27 ENSUMAG00000009860 #25 ENSUMAG00000009874 #24 PRXL2C (ENSUMAG00000009894) #23 ZNF510 (ENSUMAG00000009897) American black bear MODERN SPECIES 4845 ENSUAMG00000027541 #22 Giant Panda MODERN SPECIES 8 GKAP1 (ENSAMEG00000003861) KIF27 (ENSAMEG00000003891) C9orf64 (ENSAMEG00000003917) HNRNPK (ENSAMEG00000003926) RMI1 (ENSAMEG00000019422) SLC28A3 (ENSAMEG00000003963) NTRK2 (ENSAMEG00000003994) AGTPBP1 (ENSAMEG00000004025) NAA35 (ENSAMEG00000004087) GOLM1 (ENSAMEG00000004131) ENSAMEG00000004136 TUT7 (ENSAMEG00000004148) GAS1 (ENSAMEG00000019430) ENSAMEG00000024576 ENSAMEG00000006710 ENSAMEG00000011406 #22 ENSAMEG00000011432 #22 ENSAMEG00000011466 #34 ENSAMEG00000011494 #33 AOPEP (ENSAMEG00000011525) #32 FANCC (ENSAMEG00000011534) #31 PTCH1 (ENSAMEG00000011568) #30 ERCC6L2 (ENSAMEG00000011657) HSD17B3 (ENSAMEG00000007099) #28 SLC35D2 (ENSAMEG00000012082) #27 ZNF367 (ENSAMEG00000025616) #26 HABP4 (ENSAMEG00000012025) #25 ENSAMEG00000011999 #24 PRXL2C (ENSAMEG00000011995) #23 ZNF782 (ENSAMEG00000024008) ENSAMEG00000030766 Canidae ANCESTRAL SPECIES 47 ENSGT00390000002374 ENSGT00940000153434.a.a ENSGT00940000161055 ENSGT00390000016025.a ENSGT00940000155181 ENSGT00940000157707 ENSGT00390000002445 ENSGT00530000063675.b ENSGT00940000164141 ENSGT00940000164155 ENSGT00490000043385 ENSGT00940000156859 ENSGT00390000001195.a ENSGT00940000153424.a.b ENSGT00940000153321.b.b.l.a.b.d #22 ENSGT00940000153321.b.b.l.a.b.c #22 ENSGT00390000015513.a.a.b #34 ENSGT00390000015513.a.a.a #33 ENSGT00940000155211 #32 ENSGT00390000016390 #31 ENSGT00940000159011 #30 ENSGT00940000161328 #29 ENSGT00940000160266 #28 ENSGT00940000160237 #27 ENSGT00670000098074 #26 ENSGT00520000055591.b #25 ENSGT00940000155950 #24 ENSGT00510000048363 #23 ENSGT00940000153505.a.b.b ENSGT00940000163051 ENSGT00940000154367.a.m.a Canis_lupus ANCESTRAL SPECIES ENSGT01100000263605.i.a ENSGT00940000157487.ib ENSGT00390000002374 ENSGT00940000153434.a.a ENSGT00940000161055 ENSGT00390000016025.a ENSGT00940000155181 ENSGT00940000157707 ENSGT00390000002445 ENSGT00530000063675.b ENSGT00940000164155 ENSGT00490000043385 ENSGT00940000156859 ENSGT00390000001195.a ENSGT00940000153424.a.b ENSGT00940000153321.b.b.l.a.b.c #22 ENSGT00390000015513.a.a.b #34 ENSGT00390000015513.a.a.a #33 ENSGT00940000155211 #32 ENSGT00390000016390 #31 ENSGT00940000159011 #30 ENSGT00940000161328 #29 ENSGT00940000160266 #28 ENSGT00940000160237 #27 ENSGT00670000098074 #26 ENSGT00520000055591.b #25 ENSGT00940000155950 #24 ENSGT00510000048363 #23 ENSGT00940000153505.a.b.b ENSGT00940000163051 ENSGT00940000154367.a.m.a.b Dog MODERN SPECIES KIF27 (ENSCAFG00845005776) C1H9orf64 (ENSCAFG00845005648) HNRNPK (ENSCAFG00845005598) SLC28A3 (ENSCAFG00845005455) NTRK2 (ENSCAFG00845005371) ENSCAFG00845005339 AGTPBP1 (ENSCAFG00845005286) NAA35 (ENSCAFG00845005251) GOLM1 (ENSCAFG00845005231) C9orf153 (ENSCAFG00845005214) ENSCAFG00845005203 TUT7 (ENSCAFG00845005138) ENSCAFG00845005091 DAPK1 (ENSCAFG00845005073) ENSCAFG00845005052 #22 ENSCAFG00845005046 #22 FBP2 (ENSCAFG00845005034) #34 FBP1 (ENSCAFG00845005020) #33 AOPEP (ENSCAFG00845004982) #32 FANCC (ENSCAFG00845004921) #31 PTCH1 (ENSCAFG00845003905) #30 ERCC6L2 (ENSCAFG00845003753) HSD17B3 (ENSCAFG00845003593) #27 ZNF367 (ENSCAFG00845003549) #26 HABP4 (ENSCAFG00845003506) #25 ENSCAFG00845003296 #24 PRXL2C (ENSCAFG00845003191) #23 ZNF510 (ENSCAFG00845003072) ZNF782 (ENSCAFG00845003018) ENSCAFG00845002925 ENSCAFG00845002888 #20 Dingo MODERN SPECIES 125 C9orf64 (ENSCAFG00020023824) ENSCAFG00020023808 RMI1 (ENSCAFG00020023802) ENSCAFG00020023798 NTRK2 (ENSCAFG00020023722) AGTPBP1 (ENSCAFG00020023700) NAA35 (ENSCAFG00020023685) GOLM1 (ENSCAFG00020023678) ENSCAFG00020023677 TUT7 (ENSCAFG00020023620) GAS1 (ENSCAFG00020023611) ENSCAFG00020023609 ENSCAFG00020023607 ENSCAFG00020023601 DAPK1 (ENSCAFG00020023375) ENSCAFG00020023239 #22 FBP2 (ENSCAFG00020023226) #34 FBP1 (ENSCAFG00020023224) #33 AOPEP (ENSCAFG00020023220) #32 FANCC (ENSCAFG00020023172) #31 PTCH1 (ENSCAFG00020022802) #30 ENSCAFG00020022764 #29 ENSCAFG00020022761 #29 HSD17B3 (ENSCAFG00020022744) #28 SLC35D2 (ENSCAFG00020022723) #27 ZNF367 (ENSCAFG00020022719) #26 HABP4 (ENSCAFG00020022704) #25 ENSCAFG00020022657 #24 PRXL2C (ENSCAFG00020022646) #23 ZNF510 (ENSCAFG00020022643) ZNF782 (ENSCAFG00020022642) Red fox MODERN SPECIES 194 GTPBP1 (ENSVVUG00000022607) JOSD1 (ENSVVUG00000022615) ENSVVUG00000022618 CBY1 (ENSVVUG00000022619) ENSVVUG00000022620 ENSVVUG00000022626 DMC1 (ENSVVUG00000022631) DDX17 (ENSVVUG00000022762) ENSVVUG00000022766 KDELR3 (ENSVVUG00000022770) KCNJ4 (ENSVVUG00000022771) CSNK1E (ENSVVUG00000022775) TMEM184B (ENSVVUG00000022788) MAFF (ENSVVUG00000022794) PLA2G6 (ENSVVUG00000022796) ENSVVUG00000022801 #22 FBP2 (ENSVVUG00000022821) #34 FBP1 (ENSVVUG00000022822) #33 AOPEP (ENSVVUG00000022825) #32 FANCC (ENSVVUG00000022840) #31 PTCH1 (ENSVVUG00000022848) #30 ERCC6L2 (ENSVVUG00000022869) HSD17B3 (ENSVVUG00000022907) #28 SLC35D2 (ENSVVUG00000022922) #27 ZNF367 (ENSVVUG00000022936) #26 HABP4 (ENSVVUG00000022970) #25 CDC14B (ENSVVUG00000022980) #24 PRXL2C (ENSVVUG00000023001) #23 ENSVVUG00000023002 ENSVVUG00000023003 ZNF510 (ENSVVUG00000023006) Caniformia ANCESTRAL SPECIES ENSGT00940000153321.b.b.l.a.b.d #22 Canidae ANCESTRAL SPECIES 47 ENSGT00940000157487.ib ENSGT00390000002374 ENSGT00940000153434.a.a ENSGT00940000161055 ENSGT00390000016025.a ENSGT00940000155181 ENSGT00940000157707 ENSGT00390000002445 ENSGT00530000063675.b ENSGT00940000164141 ENSGT00940000164155 ENSGT00490000043385 ENSGT00940000156859 ENSGT00390000001195.a ENSGT00940000153424.a.b ENSGT00940000153321.b.b.l.a.b.d #22 ENSGT00940000153321.b.b.l.a.b.c #22 ENSGT00390000015513.a.a.b #34 ENSGT00390000015513.a.a.a #33 ENSGT00940000155211 #32 ENSGT00390000016390 #31 ENSGT00940000159011 #30 ENSGT00940000161328 #29 ENSGT00940000160266 #28 ENSGT00940000160237 #27 ENSGT00670000098074 #26 ENSGT00520000055591.b #25 ENSGT00940000155950 #24 ENSGT00510000048363 #23 ENSGT00940000153505.a.b.b ENSGT00940000163051 Canis_lupus ANCESTRAL SPECIES ENSGT00940000153321.b.b.l.a.b.d #22 Dog MODERN SPECIES ENSCAFG00845005971 KIF27 (ENSCAFG00845005776) C1H9orf64 (ENSCAFG00845005648) HNRNPK (ENSCAFG00845005598) SLC28A3 (ENSCAFG00845005455) NTRK2 (ENSCAFG00845005371) ENSCAFG00845005339 AGTPBP1 (ENSCAFG00845005286) NAA35 (ENSCAFG00845005251) GOLM1 (ENSCAFG00845005231) C9orf153 (ENSCAFG00845005214) ENSCAFG00845005203 TUT7 (ENSCAFG00845005138) ENSCAFG00845005091 DAPK1 (ENSCAFG00845005073) ENSCAFG00845005052 #22 ENSCAFG00845005046 #22 FBP2 (ENSCAFG00845005034) #34 FBP1 (ENSCAFG00845005020) #33 AOPEP (ENSCAFG00845004982) #32 FANCC (ENSCAFG00845004921) #31 PTCH1 (ENSCAFG00845003905) #30 ERCC6L2 (ENSCAFG00845003753) HSD17B3 (ENSCAFG00845003593) #27 ZNF367 (ENSCAFG00845003549) #26 HABP4 (ENSCAFG00845003506) #25 ENSCAFG00845003296 #24 PRXL2C (ENSCAFG00845003191) #23 ZNF510 (ENSCAFG00845003072) ZNF782 (ENSCAFG00845003018) ENSCAFG00845002925 Caniformia_b ANCESTRAL SPECIES ENSGT00940000153321.b.b.l.a.b.d #22 Ursidae ANCESTRAL SPECIES ENSGT00940000153321.b.b.l.a.b.d #22 Ursus ANCESTRAL SPECIES ENSGT00940000153321.b.b.l.a.b.d #22 American black bear MODERN SPECIES 4844 ENSUAMG00000027539 #22 ENSUAMG00000027540 Mustelinae ANCESTRAL SPECIES ENSGT00940000153321.b.b.l.a.b.d #22 Ferret MODERN SPECIES 699 ENSMPUG00000005879 #22 ENSMPUG00000005869 ENSMPUG00000005859 #22 Atlantogenata ANCESTRAL SPECIES ENSGT00940000153321.b.b.l.a #22 Xenarthra ANCESTRAL SPECIES ENSGT00940000153321.b.b.l.a #22 Armadillo MODERN SPECIES 2259 ENSDNOG00000035637 TSC22D2 (ENSDNOG00000036442) ENSDNOG00000049552 #22 ENSDNOG00000037965 EIF2A (ENSDNOG00000014002) SELENOT (ENSDNOG00000011743) ERICH6 (ENSDNOG00000048785) SIAH2 (ENSDNOG00000043769) MINDY4B (ENSDNOG00000025313) ENSDNOG00000019809 GPR171 (ENSDNOG00000010876) P2RY14 (ENSDNOG00000015185) GPR87 (ENSDNOG00000010879) P2RY13 (ENSDNOG00000033722) P2RY12 (ENSDNOG00000010893) MED12L (ENSDNOG00000010799) IGSF10 (ENSDNOG00000010900) Eutheria ANCESTRAL SPECIES ENSGT00940000153321.b.b.l.b #37 Boreoeutheria ANCESTRAL SPECIES ENSGT00940000153321.b.b.l.b #37 Euarchontoglires ANCESTRAL SPECIES 10 ENSGT00940000157487 ENSGT00390000002374 ENSGT00940000153434.a.a ENSGT00940000161055 ENSGT00390000016025.a ENSGT00940000155181 ENSGT00940000157707 ENSGT00390000002445 ENSGT00530000063675.b ENSGT00940000164141 ENSGT00490000043385 ENSGT00940000156859 ENSGT00390000001195.a ENSGT00940000153424.a.b ENSGT00940000154367.b ENSGT00940000153321.b.b.l.b #37 ENSGT00390000015513.a.a.b #34 ENSGT00390000015513.a.a.a #33 ENSGT00940000155211 #32 ENSGT00390000016390 #31 ENSGT00940000159011 #30 ENSGT00940000161328 #29 ENSGT00390000002550 ENSGT00940000163752 ENSGT00940000160266 #28 ENSGT00940000160237 #27 ENSGT00670000098074 #26 ENSGT00520000055591.b #25 ENSGT00940000155950 #24 ENSGT00510000048363 #23 ENSGT00940000153505.a.b.b Euarchontoglires_A ANCESTRAL SPECIES 10 ENSGT00390000008742 ENSGT00940000157487 ENSGT00390000002374 ENSGT00940000153434.a.a ENSGT00940000161055 ENSGT00390000016025.a ENSGT00940000155181 ENSGT00940000157707 ENSGT00390000002445 ENSGT00530000063675.b ENSGT00940000164141 ENSGT00490000043385 ENSGT00940000156859 ENSGT00390000001195.a ENSGT00940000153424.a.b ENSGT00940000153321.b.b.l.b #37 ENSGT00390000015513.a.a.b #34 ENSGT00390000015513.a.a.a #33 ENSGT00940000155211 #32 ENSGT00390000016390 #31 ENSGT00940000159011 #30 ENSGT00940000161328 #29 ENSGT00390000002550 ENSGT00940000163752 ENSGT00940000160266 #28 ENSGT00940000160237 #27 ENSGT00670000098074 #26 ENSGT00520000055591.b #25 ENSGT00940000155950 #24 ENSGT00510000048363 #23 ENSGT00940000153505.a.b.b Glires ANCESTRAL SPECIES 9 ENSGT00390000008742 ENSGT00940000157487 ENSGT00390000002374 ENSGT00940000153434.a.a ENSGT00940000161055 ENSGT00390000016025.a ENSGT00940000155181 ENSGT00940000157707 ENSGT00390000002445 ENSGT00530000063675.b ENSGT00940000164141 ENSGT00490000043385 ENSGT00940000156859 ENSGT00390000001195.a ENSGT00940000153424.a.b ENSGT00940000153321.b.b.l.b #37 ENSGT00390000015513.a.a.b #34 ENSGT00390000015513.a.a.a #33 ENSGT00940000155211 #32 ENSGT00390000016390 #31 ENSGT00940000159011 #30 ENSGT00940000161328 #29 ENSGT00940000163752 ENSGT00940000160266 #28 ENSGT00940000160237 #27 ENSGT00670000098074 #26 ENSGT00520000055591.b #25 ENSGT00940000155950 #24 ENSGT00510000048363 #23 ENSGT00940000153505.a.b.b ENSGT00940000163051 Rodentia ANCESTRAL SPECIES 9 ENSGT00390000008742 ENSGT00940000157487 ENSGT00390000002374 ENSGT00940000153434.a.a ENSGT00940000161055 ENSGT00390000016025.a ENSGT00940000155181 ENSGT00940000157707 ENSGT00390000002445 ENSGT00530000063675.b ENSGT00940000164141 ENSGT00490000043385 ENSGT00940000156859 ENSGT00390000001195.a ENSGT00940000153424.a.b ENSGT00940000153321.b.b.l.b #37 ENSGT00390000015513.a.a.b #34 ENSGT00390000015513.a.a.a #33 ENSGT00940000155211 #32 ENSGT00390000016390 #31 ENSGT00940000159011 #30 ENSGT00940000161328 #29 ENSGT00940000160266 #28 ENSGT00940000160237 #27 ENSGT00670000098074 #26 ENSGT00520000055591.b #25 ENSGT00940000155950 #24 ENSGT00510000048363 #23 ENSGT00940000153505.a.b.b ENSGT00940000163051 ENSGT00940000154367.a Rodentia_B ANCESTRAL SPECIES 6 ENSGT00390000008742 ENSGT00940000157487 ENSGT00390000002374 ENSGT00940000153434.a.a ENSGT00940000161055 ENSGT00390000016025.a ENSGT00940000155181 ENSGT00940000157707 ENSGT00390000002445 ENSGT00530000063675.b ENSGT00940000164141 ENSGT00490000043385 ENSGT00940000156859 ENSGT00390000001195.a ENSGT00940000153424.a.b ENSGT00940000153321.b.b.l.b #37 ENSGT00390000015513.a.a.b #34 ENSGT00390000015513.a.a.a #33 ENSGT00940000155211 #32 ENSGT00390000016390 #31 ENSGT00940000159011 #30 ENSGT00940000161328 #29 ENSGT00940000160266 #28 ENSGT00940000160237 #27 ENSGT00670000098074 #26 ENSGT00520000055591.b #25 ENSGT00940000155950 #24 ENSGT00510000048363 #23 ENSGT00940000154367.a ENSGT00530000069333.a #20 ENSGT00940000160228 #19 Myomorpha ANCESTRAL SPECIES 60 ENSGT00390000008742 ENSGT00940000157487 ENSGT00390000002374 ENSGT00940000153434.a.a ENSGT00940000161055 ENSGT00390000016025.a ENSGT00940000155181 ENSGT00940000157707 ENSGT00390000002445 ENSGT00530000063675.b ENSGT00940000164141 ENSGT00490000043385 ENSGT00940000156859 ENSGT00390000001195.a ENSGT00940000153424.a.b ENSGT00940000153321.b.b.l.b #37 ENSGT00390000015513.a.a.b #34 ENSGT00390000015513.a.a.a #33 ENSGT00940000155211 #32 ENSGT00390000016390 #31 ENSGT00940000159011 #30 ENSGT00940000161328 #29 ENSGT00940000160266 #28 ENSGT00940000160237 #27 ENSGT00670000098074 #26 ENSGT00520000055591.b #25 ENSGT00940000155950 #24 ENSGT00510000048363 #23 ENSGT00940000154367.a ENSGT00530000069333.a #20 ENSGT00940000160228 #19 Muroidea DUPLICATION Muroidea ANCESTRAL SPECIES 72 ENSGT00530000069333.a #20 ENSGT00940000154367.a ENSGT00510000048363 #23 ENSGT00940000155950 #24 ENSGT00520000055591.b #25 ENSGT00670000098074 #26 ENSGT00940000160237 #27 ENSGT00940000160266 #28 ENSGT00940000161328 #29 ENSGT00940000159011 #30 ENSGT00390000016390 #31 ENSGT00940000155211 #32 ENSGT00390000015513.a.a.a #33 ENSGT00390000015513.a.a.b #34 ENSGT00940000153321.b.b.l.b.b #37 ENSGT00940000153321.b.b.l.b.a ##37 ENSGT00940000153424.a.b ENSGT00390000001195.a ENSGT00940000156859 ENSGT00490000043385 ENSGT00940000164141 ENSGT00530000063675.b ENSGT00390000002445 ENSGT00940000157707 ENSGT00940000155181 ENSGT00390000016025.a ENSGT00940000161055 ENSGT00940000153434.a.a ENSGT00390000002374 ENSGT00940000157487 ENSGT00390000008742 Muroidea_A DUPLICATION Muroidea_A DUPLICATION Muroidea_A DUPLICATION Muroidea_A ANCESTRAL SPECIES 14 ENSGT00940000161328 #29 ENSGT00940000159011 #30 ENSGT00390000016390 #31 ENSGT00940000155211 #32 ENSGT00390000015513.a.a.a #33 ENSGT00390000015513.a.a.b #34 ENSGT00940000153321.b.b.l.b.b.a.b #36 ENSGT00940000153321.b.b.l.b.b.a.a.b #37 ENSGT00940000153321.b.b.l.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.b ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.b ##37 ENSGT00940000153321.b.b.l.b.b.b.b.a ##37 ENSGT00940000153321.b.b.l.b.b.b.b.b ##37 ENSGT00940000153321.b.b.l.b.a.b ##37 ENSGT00940000153321.b.b.l.b.a.a.a.a ##37 ENSGT00940000153321.b.b.l.b.a.a.a.b ##37 ENSGT00940000153424.a.b ENSGT00390000001195.a ENSGT00940000156859 ENSGT00490000043385 ENSGT00950000183043.a.b.b.a.a.a.b ##18 ENSGT00950000183043.a.b.b.a.b.u.b ##18 ENSGT00940000164141 ENSGT00530000063675.b ENSGT00390000002445 ENSGT00940000157707 ENSGT00940000155181 ENSGT00390000016025.a ENSGT00940000161055 ENSGT00940000153434.a.a Cricetidae ANCESTRAL SPECIES 22 ENSGT00940000161328 #29 ENSGT00940000159011 #30 ENSGT00390000016390 #31 ENSGT00940000155211 #32 ENSGT00390000015513.a.a.a #33 ENSGT00390000015513.a.a.b #34 ENSGT00940000153321.b.b.l.b.b.a.b #36 ENSGT00940000153321.b.b.l.b.b.a.a.b #37 ENSGT00940000153321.b.b.l.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.b ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.b ##37 ENSGT00940000153321.b.b.l.b.b.b.b.a ##37 ENSGT00940000153321.b.b.l.b.b.b.b.b.b ##37 ENSGT00940000153321.b.b.l.b.a.b ##37 ENSGT00940000153321.b.b.l.b.a.a.a.a ##37 ENSGT00940000153321.b.b.l.b.a.a.a.b ##37 ENSGT00940000153424.a.b ENSGT00390000001195.a ENSGT00940000156859 ENSGT00490000043385 ENSGT00950000183043.a.b.b.a.a.a.b ##18 ENSGT00950000183043.a.b.b.a.b.u.b ##18 ENSGT00940000164141 ENSGT00530000063675.b ENSGT00390000002445 ENSGT00940000157707 ENSGT00940000155181 ENSGT00390000016025.a ENSGT00940000161055 ENSGT00940000153434.a.b.a.b Cricetidae_B ANCESTRAL SPECIES 22 ENSGT00940000161328 #29 ENSGT00940000159011 #30 ENSGT00390000016390 #31 ENSGT00940000155211 #32 ENSGT00390000015513.a.a.a #33 ENSGT00390000015513.a.a.b #34 ENSGT00940000153321.b.b.l.b.b.a.b #36 ENSGT00940000153321.b.b.l.b.b.a.a.b #37 ENSGT00940000153321.b.b.l.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.b ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.b ##37 ENSGT00940000153321.b.b.l.b.b.b.b.a ##37 ENSGT00940000153321.b.b.l.b.b.b.b.b.a ##37 ENSGT00940000153321.b.b.l.b.a.b ##37 ENSGT00940000153321.b.b.l.b.a.a.a.a ##37 ENSGT00940000153321.b.b.l.b.a.a.a.b ##37 ENSGT00940000153424.a.b ENSGT00390000001195.a ENSGT00940000156859 ENSGT00490000043385 ENSGT00950000183043.a.b.b.a.a.a.b ##18 ENSGT00950000183043.a.b.b.a.b.u.a.b ##18 ENSGT00940000164141 ENSGT00530000063675.b ENSGT00390000002445 ENSGT00940000157707 ENSGT00940000155181 ENSGT00390000016025.a ENSGT00940000161055 ENSGT00940000153434.a.b.a.b Northern American deer mouse MODERN SPECIES 18 ENSPEMG00000027810 #37 Cts8 (ENSPEMG00000021957) ##37 Cts6 (ENSPEMG00000016021) ##37 Ctsr (ENSPEMG00000001393) ##37 ENSPEMG00000029752 ##37 ENSPEMG00000026728 ##37 Ctsj (ENSPEMG00000015113) ##37 ENSPEMG00000031098 ENSPEMG00000020375 ENSPEMG00000026470 ENSPEMG00000030527 ##37 ENSPEMG00000026019 ##37 ENSPEMG00000028441 ##37 ENSPEMG00000022155 ##37 4930486L24Rik (ENSPEMG00000016874) ##37 Ctsll3 (ENSPEMG00000029464) ##37 BC051665 (ENSPEMG00000025235) ##37 Dapk1 (ENSPEMG00000022627) Gas1 (ENSPEMG00000007789) Tut7 (ENSPEMG00000014030) ENSPEMG00000029941 ENSPEMG00000028848 ##18 ENSPEMG00000025105 ##18 ENSPEMG00000025782 ##18 4921517D22Rik (ENSPEMG00000022165) Golm1 (ENSPEMG00000021119) Naa35 (ENSPEMG00000020283) Agtpbp1 (ENSPEMG00000003465) ENSPEMG00000030036 Ntrk2 (ENSPEMG00000000060) Slc28a3 (ENSPEMG00000016674) Cricetinae ANCESTRAL SPECIES 20 ENSGT00940000160237 #27 ENSGT00940000160266 #28 ENSGT00940000161328 #29 ENSGT00940000159011 #30 ENSGT00390000016390 #31 ENSGT00940000155211 #32 ENSGT00390000015513.a.a.a #33 ENSGT00390000015513.a.a.b #34 ENSGT00940000153321.b.b.l.b.b.a.a.b #37 ENSGT00940000153321.b.b.l.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.b ##37 ENSGT00940000153321.b.b.l.b.b.b.a.b ##37 ENSGT00940000153321.b.b.l.b.b.b.b.a ##37 ENSGT00940000153321.b.b.l.b.b.b.b.b.b ##37 ENSGT00940000153321.b.b.l.b.a.b ##37 ENSGT00940000153321.b.b.l.b.a.a.a.a ##37 ENSGT00940000153321.b.b.l.b.a.a.a.b ##37 ENSGT00940000153424.a.b ENSGT00390000001195.a ENSGT00940000156859 ENSGT00490000043385 ENSGT00950000183043.a.b.b.a.a.a.b ##18 ENSGT00950000183043.a.b.b.a.b.u.b ##18 ENSGT00940000164141 ENSGT00530000063675.b ENSGT00390000002445 ENSGT00940000157707 ENSGT00940000155181 ENSGT00390000016025.a ENSGT00940000161055 ENSGT00940000153434.a.b.a.b Golden Hamster MODERN SPECIES 699 Habp4 (ENSMAUG00000020977) #25 Zfp367 (ENSMAUG00000019699) #26 Slc35d2 (ENSMAUG00000016504) #27 Hsd17b3 (ENSMAUG00000018759) #28 Ercc6l2 (ENSMAUG00000004820) #29 Ptch1 (ENSMAUG00000014816) #30 Fancc (ENSMAUG00000012407) #31 Aopep (ENSMAUG00000003279) #32 Fbp1 (ENSMAUG00000015819) #33 Fbp2 (ENSMAUG00000017596) #34 ENSMAUG00000016362 #37 Cts8 (ENSMAUG00000018878) ##37 Ctsr (ENSMAUG00000014961) ##37 Cts6 (ENSMAUG00000016662) ##37 Ctsj (ENSMAUG00000008852) ##37 Ctsll3 (ENSMAUG00000014374) ##37 BC051665 (ENSMAUG00000012142) ##37 Dapk1 (ENSMAUG00000000180) Gas1 (ENSMAUG00000019435) Tut7 (ENSMAUG00000006963) ENSMAUG00000000645 1700014D04Rik (ENSMAUG00000020029) ##18 ENSMAUG00000012538 Naa35 (ENSMAUG00000006704) ENSMAUG00000002599 Ntrk2 (ENSMAUG00000014898) Slc28a3 (ENSMAUG00000007466) ENSMAUG00000015268 2210016F16Rik (ENSMAUG00000001833) Kif27 (ENSMAUG00000007799) Gkap1 (ENSMAUG00000009206) Murinae ANCESTRAL SPECIES 21 ENSGT00940000159011 #30 ENSGT00390000016390 #31 ENSGT00940000155211 #32 ENSGT00390000015513.a.a.a #33 ENSGT00390000015513.a.a.b #34 ENSGT00940000153321.b.b.l.b.b.a.b #36 ENSGT00940000153321.b.b.l.b.b.a.a.b.b #37 ENSGT00940000153321.b.b.l.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.b ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.b.e ##37 ENSGT00940000153321.b.b.l.b.b.b.b.a ##37 ENSGT00390000010930 ENSGT00940000153321.b.b.l.b.b.b.b.b ##37 ENSGT00940000153321.b.b.l.b.a.b ##37 ENSGT00940000153321.b.b.l.b.a.a.a.a ##37 ENSGT00940000153321.b.b.l.b.a.a.a.b ##37 ENSGT00940000153424.a.b ENSGT00390000001195.a ENSGT00940000156859 ENSGT00490000043385 ENSGT00950000183043.a.b.b.a.a.a.b ##18 ENSGT00950000183043.a.b.b.a.b.u.b ##18 ENSGT00950000183043.a.b.b.a.b.u.a.b.a ##18 ENSGT00950000183043.a.b.b.a.b.u.a.b.b ##18 ENSGT00940000164141 ENSGT00530000063675.b ENSGT00390000002445 ENSGT00940000157707 ENSGT00940000155181 ENSGT00390000016025.a Mus ANCESTRAL SPECIES 18 ENSGT00390000016390 #31 ENSGT00940000155211 #32 ENSGT00390000015513.a.a.a #33 ENSGT00390000015513.a.a.b #34 ENSGT00940000153321.b.b.l.b.b.a.b.b #35 ENSGT00940000153321.b.b.l.b.b.a.b.a #36 ENSGT00940000153321.b.b.l.b.b.a.a.b.b #37 ENSGT00940000153321.b.b.l.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.b ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.b.e ##37 ENSGT00940000153321.b.b.l.b.b.b.b.a ##37 ENSGT00390000010930.a ENSGT00940000153321.b.b.l.b.b.b.b.b ##37 ENSGT00940000153321.b.b.l.b.a.b ##37 ENSGT00940000153321.b.b.l.b.a.a.a.a ##37 ENSGT00940000153321.b.b.l.b.a.a.a.b ##37 ENSGT00940000153424.a.b ENSGT00800000125290 ENSGT00390000001195.a ENSGT00940000156859 ENSGT00490000043385 ENSGT00950000183043.a.b.b.a.a.a.b ##18 ENSGT00950000183043.a.b.b.a.b.u.b ##18 ENSGT00950000183043.a.b.b.a.b.u.a.b.a ##18 ENSGT00950000183043.a.b.b.a.b.u.a.b.b ##18 ENSGT00940000164141 ENSGT00530000063675.b ENSGT00390000002445 ENSGT00940000157707 ENSGT00940000155181 Mus_A ANCESTRAL SPECIES 14 ENSGT00940000155211 #32 ENSGT00390000015513.a.a.a #33 ENSGT00390000015513.a.a.b #34 ENSGT00940000153321.b.b.l.b.b.a.b.b #35 ENSGT00940000153321.b.b.l.b.b.a.b.a #36 ENSGT00940000153321.b.b.l.b.b.a.a.b.b #37 ENSGT00940000153321.b.b.l.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.b ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.b.e ##37 ENSGT00940000153321.b.b.l.b.b.b.b.a ##37 ENSGT00390000010930.a ENSGT00390000010930.b ENSGT00940000153321.b.b.l.b.b.b.b.b ##37 ENSGT00940000153321.b.b.l.b.a.b ##37 ENSGT00940000153321.b.b.l.b.a.a.a.a ##37 ENSGT00940000153321.b.b.l.b.a.a.a.b ##37 ENSGT00940000153424.a.b ENSGT00800000125290 ENSGT00390000001195.a ENSGT00940000156859 ENSGT00490000043385 ENSGT00950000183043.a.b.b.a.a.a.b ##18 ENSGT00950000183043.a.b.b.a.b.u.b ##18 ENSGT00950000183043.a.b.b.a.b.u.a.b.a ##18 ENSGT00950000183043.a.b.b.a.b.u.a.b.b ##18 ENSGT00940000164141 ENSGT00530000063675.b ENSGT00390000002445 ENSGT00940000157707 ENSGT00940000155181 Mus_B ANCESTRAL SPECIES 13 ENSGT00390000015513.a.a.a #33 ENSGT00390000015513.a.a.b #34 ENSGT00940000153321.b.b.l.b.b.a.b.b #35 ENSGT00940000153321.b.b.l.b.b.a.b.a #36 ENSGT00940000153321.b.b.l.b.b.a.a.b.b #37 ENSGT00940000153321.b.b.l.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.b ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.b.e ##37 ENSGT00940000153321.b.b.l.b.b.b.b.a ##37 ENSGT00390000010930.a ENSGT00940000153321.b.b.l.b.b.b.b.b.d ##37 ENSGT00390000010930.b ENSGT00940000153321.b.b.l.b.b.b.b.b.c ##37 ENSGT00940000153321.b.b.l.b.a.b ##37 ENSGT00940000153321.b.b.l.b.a.a.a.a ##37 ENSGT00940000153321.b.b.l.b.a.a.a.b ##37 ENSGT00940000153424.a.b ENSGT00800000125290 ENSGT00390000001195.a ENSGT00940000156859 ENSGT00490000043385 ENSGT00950000183043.a.b.b.a.a.a.b ##18 ENSGT00950000183043.a.b.b.a.b.u.b ##18 ENSGT00950000183043.a.b.b.a.b.u.a.b.a ##18 ENSGT00950000183043.a.b.b.a.b.u.a.b.b ##18 ENSGT00940000164141 ENSGT00530000063675.b ENSGT00390000002445 ENSGT00940000157707 ENSGT00940000155181 Mus_C ANCESTRAL SPECIES 10 ENSGT00390000015513.a.a.a #33 ENSGT00390000015513.a.a.b #34 ENSGT00940000153321.b.b.l.b.b.a.b.b #35 ENSGT00940000153321.b.b.l.b.b.a.b.a #36 ENSGT00940000153321.b.b.l.b.b.a.a.b.b #37 ENSGT00940000153321.b.b.l.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.b ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.b.e ##37 ENSGT00940000153321.b.b.l.b.b.b.b.a ##37 ENSGT00390000010930.a ENSGT00940000153321.b.b.l.b.b.b.b.b.d ##37 ENSGT00390000010930.b ENSGT00940000153321.b.b.l.b.b.b.b.b.c ##37 ENSGT00940000153321.b.b.l.b.a.b ##37 ENSGT00940000153321.b.b.l.b.a.a.a.a ##37 ENSGT00940000153321.b.b.l.b.a.a.a.b ##37 ENSGT00940000153424.a.b ENSGT00800000125290 ENSGT00390000001195.a ENSGT00940000156859 ENSGT00490000043385 ENSGT00950000183043.a.b.b.a.a.a.b ##18 ENSGT00950000183043.a.b.b.a.b.u.b ##18 ENSGT00950000183043.a.b.b.a.b.u.a.b.a ##18 ENSGT00950000183043.a.b.b.a.b.u.a.b.b ##18 ENSGT00940000164141 ENSGT00530000063675.b ENSGT00390000002445 ENSGT00940000157707 ENSGT00940000155181 Steppe mouse MODERN SPECIES 3363 Ctsj (ENSMSIG00000021739) ##37 Tpbpa (ENSMSIG00000021726) Ctla2a (ENSMSIG00000021719) ##37 Tpbpb (ENSMSIG00000021690) Ctla2b (ENSMSIG00000021665) ##37 4930486L24Rik (ENSMSIG00000021647) ##37 Ctsll3 (ENSMSIG00000021625) ##37 BC051665 (ENSMSIG00000021609) ##37 Dapk1 (ENSMSIG00000021579) ENSMSIG00000021574 ENSMSIG00000021571 Gas1 (ENSMSIG00000021556) Tut7 (ENSMSIG00000021435) ENSMSIG00000021410 1700014D04Rik (ENSMSIG00000021396) ##18 Spata31d1d (ENSMSIG00000021387) ##18 Spata31d1b (ENSMSIG00000021379) ##18 Spata31d1a (ENSMSIG00000021365) ##18 4921517D22Rik (ENSMSIG00000021349) Golm1 (ENSMSIG00000021316) Naa35 (ENSMSIG00000021291) Agtpbp1 (ENSMSIG00000021104) spretus MODERN SPECIES 4 Fbp1 (MGP_SPRETEiJ_G0019511) #33 Fbp2 (MGP_SPRETEiJ_G0019510) #34 MGP_SPRETEiJ_G0019509 #35 Ctsm (MGP_SPRETEiJ_G0019508) #36 Cts7 (MGP_SPRETEiJ_G0019507) #37 Cts8 (MGP_SPRETEiJ_G0019506) ##37 Cts6 (MGP_SPRETEiJ_G0019505) ##37 Ctsr (MGP_SPRETEiJ_G0019504) ##37 Ctsq (MGP_SPRETEiJ_G0019503) ##37 Ctsj (MGP_SPRETEiJ_G0019502) ##37 MGP_SPRETEiJ_G0019501 Ctla2a (MGP_SPRETEiJ_G0019500) ##37 Tpbpb (MGP_SPRETEiJ_G0019499) Ctla2b (MGP_SPRETEiJ_G0019498) ##37 4930486L24Rik (MGP_SPRETEiJ_G0019497) ##37 Ctsll3 (MGP_SPRETEiJ_G0019496) ##37 BC051665 (MGP_SPRETEiJ_G0019495) ##37 Dapk1 (MGP_SPRETEiJ_G0019494) MGP_SPRETEiJ_G0019493 Gas1 (MGP_SPRETEiJ_G0019492) Tut7 (MGP_SPRETEiJ_G0019491) MGP_SPRETEiJ_G0019490 1700014D04Rik (MGP_SPRETEiJ_G0019489) ##18 Spata31d1d (MGP_SPRETEiJ_G0019488) ##18 Spata31d1a (MGP_SPRETEiJ_G0019487) ##18 4921517D22Rik (MGP_SPRETEiJ_G0019486) MGP_SPRETEiJ_G0019485 Naa35 (MGP_SPRETEiJ_G0019484) Agtpbp1 (MGP_SPRETEiJ_G0019483) Ntrk2 (MGP_SPRETEiJ_G0019482) Slc28a3 (MGP_SPRETEiJ_G0019481) Mouse MODERN SPECIES 4 Cts3 (ENSMUSG00000074870) #35 Gm49352 (ENSMUSG00000114904) Ctsm (ENSMUSG00000074871) #36 Cts7 (ENSMUSG00000021440) #37 Cts8 (ENSMUSG00000057446) ##37 Cts6 (ENSMUSG00000021441) ##37 Ctsr (ENSMUSG00000055679) ##37 Ctsq (ENSMUSG00000021439) ##37 Ctsj (ENSMUSG00000055298) ##37 Tpbpa (ENSMUSG00000033834) Ctla2a (ENSMUSG00000044258) ##37 Tpbpb (ENSMUSG00000062705) Gm49391 (ENSMUSG00000114432) Ctla2b (ENSMUSG00000074874) ##37 4930486L24Rik (ENSMUSG00000050345) ##37 Ctsll3 (ENSMUSG00000056728) ##37 BC051665 (ENSMUSG00000042243) ##37 Dapk1 (ENSMUSG00000021559) Gas1 (ENSMUSG00000052957) Tut7 (ENSMUSG00000035248) Isca1 (ENSMUSG00000044792) 1700014D04Rik (ENSMUSG00000051054) ##18 Spata31d1d (ENSMUSG00000043986) ##18 Spata31d1b (ENSMUSG00000091311) ##18 Spata31d1a (ENSMUSG00000050876) ##18 4921517D22Rik (ENSMUSG00000049902) Golm1 (ENSMUSG00000021556) Naa35 (ENSMUSG00000021555) Agtpbp1 (ENSMUSG00000021557) Ntrk2 (ENSMUSG00000055254) Slc28a3 (ENSMUSG00000021553) Ryukyu mouse MODERN SPECIES 4 Aopep (MGP_CAROLIEiJ_G0018632) #32 Fbp1 (MGP_CAROLIEiJ_G0018631) #33 Fbp2 (MGP_CAROLIEiJ_G0018630) #34 MGP_CAROLIEiJ_G0018629 #35 Ctsm (MGP_CAROLIEiJ_G0018628) #36 Cts7 (MGP_CAROLIEiJ_G0018627) #37 Cts8 (MGP_CAROLIEiJ_G0018626) ##37 Cts6 (MGP_CAROLIEiJ_G0018625) ##37 Ctsr (MGP_CAROLIEiJ_G0018624) ##37 Ctsj (MGP_CAROLIEiJ_G0018623) ##37 MGP_CAROLIEiJ_G0018622 Tpbpb (MGP_CAROLIEiJ_G0018621) MGP_CAROLIEiJ_G0018620 ##37 MGP_CAROLIEiJ_G0018619 ##37 4930486L24Rik (MGP_CAROLIEiJ_G0018618) ##37 Ctsll3 (MGP_CAROLIEiJ_G0018617) ##37 BC051665 (MGP_CAROLIEiJ_G0018616) ##37 Dapk1 (MGP_CAROLIEiJ_G0018615) MGP_CAROLIEiJ_G0018614 Gas1 (MGP_CAROLIEiJ_G0018613) Tut7 (MGP_CAROLIEiJ_G0018612) MGP_CAROLIEiJ_G0018611 1700014D04Rik (MGP_CAROLIEiJ_G0018610) ##18 Spata31d1d (MGP_CAROLIEiJ_G0018609) ##18 MGP_CAROLIEiJ_G0018608 ##18 MGP_CAROLIEiJ_G0018607 ##18 4921517D22Rik (MGP_CAROLIEiJ_G0018606) Golm1 (MGP_CAROLIEiJ_G0018605) MGP_CAROLIEiJ_G0018604 Agtpbp1 (MGP_CAROLIEiJ_G0018603) Ntrk2 (MGP_CAROLIEiJ_G0018602) Shrew mouse MODERN SPECIES 7 Aopep (MGP_PahariEiJ_G0019696) #32 Fbp1 (MGP_PahariEiJ_G0019695) #33 Fbp2 (MGP_PahariEiJ_G0019694) #34 MGP_PahariEiJ_G0019693 #35 MGP_PahariEiJ_G0019692 #36 Cts7 (MGP_PahariEiJ_G0019691) #37 Cts8 (MGP_PahariEiJ_G0019690) ##37 Cts6 (MGP_PahariEiJ_G0019689) ##37 Ctsr (MGP_PahariEiJ_G0019688) ##37 Ctsj (MGP_PahariEiJ_G0019687) ##37 MGP_PahariEiJ_G0019686 MGP_PahariEiJ_G0019685 MGP_PahariEiJ_G0019684 ##37 MGP_PahariEiJ_G0019683 ##37 4930486L24Rik (MGP_PahariEiJ_G0019682) ##37 Ctsll3 (MGP_PahariEiJ_G0019681) ##37 BC051665 (MGP_PahariEiJ_G0019680) ##37 Dapk1 (MGP_PahariEiJ_G0019679) MGP_PahariEiJ_G0019678 Gas1 (MGP_PahariEiJ_G0019677) Tut7 (MGP_PahariEiJ_G0019676) MGP_PahariEiJ_G0019675 1700014D04Rik (MGP_PahariEiJ_G0019674) ##18 Spata31d1d (MGP_PahariEiJ_G0019673) ##18 Spata31d1b (MGP_PahariEiJ_G0019672) ##18 MGP_PahariEiJ_G0019671 ##18 4921517D22Rik (MGP_PahariEiJ_G0019670) Golm1 (MGP_PahariEiJ_G0019669) Naa35 (MGP_PahariEiJ_G0019668) Agtpbp1 (MGP_PahariEiJ_G0019667) Ntrk2 (MGP_PahariEiJ_G0019666) Rat MODERN SPECIES 8 RGD1564657 (ENSRNOG00000050474) ##37 Cts7 (ENSRNOG00000033540) #37 Cts8l1 (ENSRNOG00000065532) ##37 Cts8 (ENSRNOG00000040000) ##37 Ctsr (ENSRNOG00000017888) ##37 MGC114246 (ENSRNOG00000039990) ##37 AABR07043347.1 (ENSRNOG00000051410) Ctsq (ENSRNOG00000048693) ##37 LOC100364523 (ENSRNOG00000056519) ##37 Ctsql2 (ENSRNOG00000017946) ##37 Ctsj (ENSRNOG00000046476) ##37 RGD1564827 (ENSRNOG00000069712) #36 Tpbpa (ENSRNOG00000039975) Ctla2a (ENSRNOG00000039971) ##37 Testin (ENSRNOG00000018028) ##37 Ctsll3 (ENSRNOG00000069877) ##37 RGD1308751 (ENSRNOG00000039954) ##37 Dapk1 (ENSRNOG00000018198) Tut7 (ENSRNOG00000016629) Isca1 (ENSRNOG00000018343) AABR07026929.1 (ENSRNOG00000042026) ##18 Spata31d1 (ENSRNOG00000027014) ##18 Spata31d1b (ENSRNOG00000069288) ##18 Spata31d3 (ENSRNOG00000056413) ##18 LOC100912252 (ENSRNOG00000042206) Golm1 (ENSRNOG00000018400) Naa35 (ENSRNOG00000018417) ENSRNOG00000064986 Agtpbp1 (ENSRNOG00000018651) Ntrk2 (ENSRNOG00000018839) Slc28a3 (ENSRNOG00000018853) Muroidea_A ANCESTRAL SPECIES 14 ENSGT00940000159011 #30 ENSGT00390000016390 #31 ENSGT00940000155211 #32 ENSGT00390000015513.a.a.a #33 ENSGT00390000015513.a.a.b #34 ENSGT00940000153321.b.b.l.b.b.a.b #36 ENSGT00940000153321.b.b.l.b.b.a.a.b #37 ENSGT00940000153321.b.b.l.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.b ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.b ##37 ENSGT00940000153321.b.b.l.b.b.b.b.a ##37 ENSGT00940000153321.b.b.l.b.b.b.b.b ##37 ENSGT00940000153321.b.b.l.b.a.b ##37 ENSGT00940000153321.b.b.l.b.a.a.a.a ##37 ENSGT00940000153321.b.b.l.b.a.a.a.b ##37 ENSGT00940000153424.a.b ENSGT00390000001195.a ENSGT00940000156859 ENSGT00490000043385 ENSGT00950000183043.a.b.b.a.a.a.b ##18 ENSGT00950000183043.a.b.b.a.b.u.b ##18 ENSGT00940000164141 ENSGT00530000063675.b ENSGT00390000002445 ENSGT00940000157707 ENSGT00940000155181 ENSGT00390000016025.a ENSGT00940000161055 ENSGT00940000153434.a.a ENSGT00390000002374 Cricetidae ANCESTRAL SPECIES 22 ENSGT00940000159011 #30 ENSGT00390000016390 #31 ENSGT00940000155211 #32 ENSGT00390000015513.a.a.a #33 ENSGT00390000015513.a.a.b #34 ENSGT00940000153321.b.b.l.b.b.a.b #36 ENSGT00940000153321.b.b.l.b.b.a.a.b #37 ENSGT00940000153321.b.b.l.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.b ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.b ##37 ENSGT00940000153321.b.b.l.b.b.b.b.a ##37 ENSGT00940000153321.b.b.l.b.b.b.b.b.b ##37 ENSGT00940000153321.b.b.l.b.a.b ##37 ENSGT00940000153321.b.b.l.b.a.a.a.a ##37 ENSGT00940000153321.b.b.l.b.a.a.a.b ##37 ENSGT00940000153424.a.b ENSGT00390000001195.a ENSGT00940000156859 ENSGT00490000043385 ENSGT00950000183043.a.b.b.a.a.a.b ##18 ENSGT00950000183043.a.b.b.a.b.u.b ##18 ENSGT00940000164141 ENSGT00530000063675.b ENSGT00390000002445 ENSGT00940000157707 ENSGT00940000155181 ENSGT00390000016025.a ENSGT00940000161055 ENSGT00940000153434.a.b.a.b ENSGT00390000002374 Cricetinae ANCESTRAL SPECIES 20 ENSGT00940000160266 #28 ENSGT00940000161328 #29 ENSGT00940000159011 #30 ENSGT00390000016390 #31 ENSGT00940000155211 #32 ENSGT00390000015513.a.a.a #33 ENSGT00390000015513.a.a.b #34 ENSGT00940000153321.b.b.l.b.b.a.a.b #37 ENSGT00940000153321.b.b.l.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.b ##37 ENSGT00940000153321.b.b.l.b.b.b.a.b ##37 ENSGT00940000153321.b.b.l.b.b.b.b.a ##37 ENSGT00940000153321.b.b.l.b.b.b.b.b.b ##37 ENSGT00940000153321.b.b.l.b.a.b ##37 ENSGT00940000153321.b.b.l.b.a.a.a.a ##37 ENSGT00940000153321.b.b.l.b.a.a.a.b ##37 ENSGT00940000153424.a.b ENSGT00390000001195.a ENSGT00940000156859 ENSGT00490000043385 ENSGT00950000183043.a.b.b.a.a.a.b ##18 ENSGT00950000183043.a.b.b.a.b.u.b ##18 ENSGT00940000164141 ENSGT00530000063675.b ENSGT00390000002445 ENSGT00940000157707 ENSGT00940000155181 ENSGT00390000016025.a ENSGT00940000161055 ENSGT00940000153434.a.b.a.b ENSGT00390000002374 Chinese hamster chok1gshd MODERN SPECIES 317 ENSCGRG00001008618 Ptch1 (ENSCGRG00001010176) #30 Fancc (ENSCGRG00001013491) #31 Aopep (ENSCGRG00001012713) #32 Fbp1 (ENSCGRG00001009150) #33 Fbp2 (ENSCGRG00001022515) #34 Cts8 (ENSCGRG00001013704) ##37 Cts6 (ENSCGRG00001022925) ##37 Ctsq (ENSCGRG00001002399) ##37 Ctsj (ENSCGRG00001024764) ##37 ENSCGRG00001015895 ##37 ENSCGRG00001024602 ##37 4930486L24Rik (ENSCGRG00001023066) ##37 ENSCGRG00001019274 ##37 ENSCGRG00001014152 ##37 BC051665 (ENSCGRG00001008665) ##37 Dapk1 (ENSCGRG00001000497) Gas1 (ENSCGRG00001010171) Tut7 (ENSCGRG00001020605) ENSCGRG00001007037 1700014D04Rik (ENSCGRG00001022165) ##18 Spata31d1d (ENSCGRG00001011836) ##18 ENSCGRG00001001460 Golm1 (ENSCGRG00001021525) ENSCGRG00001022085 Agtpbp1 (ENSCGRG00001021345) ENSCGRG00001013499 ENSCGRG00001012376 Slc28a3 (ENSCGRG00001020206) Rmi1 (ENSCGRG00001004591) ENSCGRG00001016951 Golden Hamster MODERN SPECIES 699 Zfp367 (ENSMAUG00000019699) #26 Slc35d2 (ENSMAUG00000016504) #27 Hsd17b3 (ENSMAUG00000018759) #28 Ercc6l2 (ENSMAUG00000004820) #29 Ptch1 (ENSMAUG00000014816) #30 Fancc (ENSMAUG00000012407) #31 Aopep (ENSMAUG00000003279) #32 Fbp1 (ENSMAUG00000015819) #33 Fbp2 (ENSMAUG00000017596) #34 ENSMAUG00000016362 #37 Cts8 (ENSMAUG00000018878) ##37 Ctsr (ENSMAUG00000014961) ##37 Cts6 (ENSMAUG00000016662) ##37 Ctsj (ENSMAUG00000008852) ##37 Ctsll3 (ENSMAUG00000014374) ##37 BC051665 (ENSMAUG00000012142) ##37 Dapk1 (ENSMAUG00000000180) Gas1 (ENSMAUG00000019435) Tut7 (ENSMAUG00000006963) ENSMAUG00000000645 1700014D04Rik (ENSMAUG00000020029) ##18 ENSMAUG00000012538 Naa35 (ENSMAUG00000006704) ENSMAUG00000002599 Ntrk2 (ENSMAUG00000014898) Slc28a3 (ENSMAUG00000007466) ENSMAUG00000015268 2210016F16Rik (ENSMAUG00000001833) Kif27 (ENSMAUG00000007799) Gkap1 (ENSMAUG00000009206) Ubqln1 (ENSMAUG00000009272) Cricetidae_B ANCESTRAL SPECIES 22 ENSGT00940000159011 #30 ENSGT00390000016390 #31 ENSGT00940000155211 #32 ENSGT00390000015513.a.a.a #33 ENSGT00390000015513.a.a.b #34 ENSGT00940000153321.b.b.l.b.b.a.b #36 ENSGT00940000153321.b.b.l.b.b.a.a.b #37 ENSGT00940000153321.b.b.l.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.b ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.b ##37 ENSGT00940000153321.b.b.l.b.b.b.b.a ##37 ENSGT00940000153321.b.b.l.b.b.b.b.b.a ##37 ENSGT00940000153321.b.b.l.b.a.b ##37 ENSGT00940000153321.b.b.l.b.a.a.a.a ##37 ENSGT00940000153321.b.b.l.b.a.a.a.b ##37 ENSGT00940000153424.a.b ENSGT00390000001195.a ENSGT00940000156859 ENSGT00490000043385 ENSGT00950000183043.a.b.b.a.a.a.b ##18 ENSGT00950000183043.a.b.b.a.b.u.a.b ##18 ENSGT00940000164141 ENSGT00530000063675.b ENSGT00390000002445 ENSGT00940000157707 ENSGT00940000155181 ENSGT00390000016025.a ENSGT00940000161055 ENSGT00940000153434.a.b.a.b ENSGT00940000153434.a.a Prairie vole DUPLICATION Prairie vole MODERN SPECIES 3 Ptch1 (ENSMOCG00000022943) #30 Fancc (ENSMOCG00000001776) #31 Aopep (ENSMOCG00000003056) #32 Fbp1 (ENSMOCG00000014907) #33 Fbp2 (ENSMOCG00000017815) #34 ENSMOCG00000010780 #36 Cts7 (ENSMOCG00000001845) #37 Cts8 (ENSMOCG00000005191) ##37 ENSMOCG00000020961 ##37 ENSMOCG00000013109 ##37 ENSMOCG00000000781 ##37 Ctsj (ENSMOCG00000013146) ##37 4930486L24Rik (ENSMOCG00000005874) ##37 ENSMOCG00000019948 ##37 ENSMOCG00000012620 ##37 Dapk1 (ENSMOCG00000016789) Gas1 (ENSMOCG00000002738) ENSMOCG00000022892 ENSMOCG00000007812 ENSMOCG00000000209 ENSMOCG00000000876 ##18 4921517D22Rik (ENSMOCG00000022999) ENSMOCG00000019507 Naa35 (ENSMOCG00000013999) Agtpbp1 (ENSMOCG00000014650) Ntrk2 (ENSMOCG00000015461) Slc28a3 (ENSMOCG00000005269) Rmi1 (ENSMOCG00000016761) ENSMOCG00000001446 2210016F16Rik (ENSMOCG00000017857) Prairie vole MODERN SPECIES 3 Ptch1 (ENSMOCG00000022943) #30 Fancc (ENSMOCG00000001776) #31 Aopep (ENSMOCG00000003056) #32 Fbp1 (ENSMOCG00000014907) #33 Fbp2 (ENSMOCG00000017815) #34 ENSMOCG00000010780 #36 Cts7 (ENSMOCG00000001845) #37 Cts8 (ENSMOCG00000005191) ##37 ENSMOCG00000020961 ##37 ENSMOCG00000013109 ##37 ENSMOCG00000000781 ##37 Ctsj (ENSMOCG00000013146) ##37 4930486L24Rik (ENSMOCG00000005874) ##37 ENSMOCG00000019948 ##37 ENSMOCG00000012620 ##37 Dapk1 (ENSMOCG00000016789) Gas1 (ENSMOCG00000002738) ENSMOCG00000022892 ENSMOCG00000007812 ENSMOCG00000000209 ENSMOCG00000000876 ##18 4921517D22Rik (ENSMOCG00000022999) ENSMOCG00000019507 Naa35 (ENSMOCG00000013999) Agtpbp1 (ENSMOCG00000014650) Ntrk2 (ENSMOCG00000015461) Slc28a3 (ENSMOCG00000005269) Rmi1 (ENSMOCG00000016761) ENSMOCG00000001446 Northern American deer mouse MODERN SPECIES 18 Cts8 (ENSPEMG00000021957) ##37 Cts6 (ENSPEMG00000016021) ##37 Ctsr (ENSPEMG00000001393) ##37 ENSPEMG00000029752 ##37 ENSPEMG00000026728 ##37 Ctsj (ENSPEMG00000015113) ##37 ENSPEMG00000031098 ENSPEMG00000020375 ENSPEMG00000026470 ENSPEMG00000030527 ##37 ENSPEMG00000026019 ##37 ENSPEMG00000028441 ##37 ENSPEMG00000022155 ##37 4930486L24Rik (ENSPEMG00000016874) ##37 Ctsll3 (ENSPEMG00000029464) ##37 BC051665 (ENSPEMG00000025235) ##37 Dapk1 (ENSPEMG00000022627) Gas1 (ENSPEMG00000007789) Tut7 (ENSPEMG00000014030) ENSPEMG00000029941 ENSPEMG00000028848 ##18 ENSPEMG00000025105 ##18 ENSPEMG00000025782 ##18 4921517D22Rik (ENSPEMG00000022165) Golm1 (ENSPEMG00000021119) Naa35 (ENSPEMG00000020283) Agtpbp1 (ENSPEMG00000003465) ENSPEMG00000030036 Ntrk2 (ENSPEMG00000000060) Slc28a3 (ENSPEMG00000016674) Hnrnpk (ENSPEMG00000012825) Murinae ANCESTRAL SPECIES 21 ENSGT00390000016390 #31 ENSGT00940000155211 #32 ENSGT00390000015513.a.a.a #33 ENSGT00390000015513.a.a.b #34 ENSGT00940000153321.b.b.l.b.b.a.b #36 ENSGT00940000153321.b.b.l.b.b.a.a.b.b #37 ENSGT00940000153321.b.b.l.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.b ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.b.e ##37 ENSGT00940000153321.b.b.l.b.b.b.b.a ##37 ENSGT00390000010930 ENSGT00940000153321.b.b.l.b.b.b.b.b ##37 ENSGT00940000153321.b.b.l.b.a.b ##37 ENSGT00940000153321.b.b.l.b.a.a.a.a ##37 ENSGT00940000153321.b.b.l.b.a.a.a.b ##37 ENSGT00940000153424.a.b ENSGT00390000001195.a ENSGT00940000156859 ENSGT00490000043385 ENSGT00950000183043.a.b.b.a.a.a.b ##18 ENSGT00950000183043.a.b.b.a.b.u.b ##18 ENSGT00950000183043.a.b.b.a.b.u.a.b.a ##18 ENSGT00950000183043.a.b.b.a.b.u.a.b.b ##18 ENSGT00940000164141 ENSGT00530000063675.b ENSGT00390000002445 ENSGT00940000157707 ENSGT00940000155181 ENSGT00390000016025.a ENSGT00940000161055 Mus ANCESTRAL SPECIES 18 ENSGT00940000155211 #32 ENSGT00390000015513.a.a.a #33 ENSGT00390000015513.a.a.b #34 ENSGT00940000153321.b.b.l.b.b.a.b.b #35 ENSGT00940000153321.b.b.l.b.b.a.b.a #36 ENSGT00940000153321.b.b.l.b.b.a.a.b.b #37 ENSGT00940000153321.b.b.l.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.b ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.b.e ##37 ENSGT00940000153321.b.b.l.b.b.b.b.a ##37 ENSGT00390000010930.a ENSGT00940000153321.b.b.l.b.b.b.b.b ##37 ENSGT00940000153321.b.b.l.b.a.b ##37 ENSGT00940000153321.b.b.l.b.a.a.a.a ##37 ENSGT00940000153321.b.b.l.b.a.a.a.b ##37 ENSGT00940000153424.a.b ENSGT00800000125290 ENSGT00390000001195.a ENSGT00940000156859 ENSGT00490000043385 ENSGT00950000183043.a.b.b.a.a.a.b ##18 ENSGT00950000183043.a.b.b.a.b.u.b ##18 ENSGT00950000183043.a.b.b.a.b.u.a.b.a ##18 ENSGT00950000183043.a.b.b.a.b.u.a.b.b ##18 ENSGT00940000164141 ENSGT00530000063675.b ENSGT00390000002445 ENSGT00940000157707 ENSGT00940000155181 ENSGT00390000016025.a Mus_A ANCESTRAL SPECIES 14 ENSGT00390000015513.a.a.a #33 ENSGT00390000015513.a.a.b #34 ENSGT00940000153321.b.b.l.b.b.a.b.b #35 ENSGT00940000153321.b.b.l.b.b.a.b.a #36 ENSGT00940000153321.b.b.l.b.b.a.a.b.b #37 ENSGT00940000153321.b.b.l.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.b ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.b.e ##37 ENSGT00940000153321.b.b.l.b.b.b.b.a ##37 ENSGT00390000010930.a ENSGT00390000010930.b ENSGT00940000153321.b.b.l.b.b.b.b.b ##37 ENSGT00940000153321.b.b.l.b.a.b ##37 ENSGT00940000153321.b.b.l.b.a.a.a.a ##37 ENSGT00940000153321.b.b.l.b.a.a.a.b ##37 ENSGT00940000153424.a.b ENSGT00800000125290 ENSGT00390000001195.a ENSGT00940000156859 ENSGT00490000043385 ENSGT00950000183043.a.b.b.a.a.a.b ##18 ENSGT00950000183043.a.b.b.a.b.u.b ##18 ENSGT00950000183043.a.b.b.a.b.u.a.b.a ##18 ENSGT00950000183043.a.b.b.a.b.u.a.b.b ##18 ENSGT00940000164141 ENSGT00530000063675.b ENSGT00390000002445 ENSGT00940000157707 ENSGT00940000155181 ENSGT00390000016025.a Mus_B ANCESTRAL SPECIES 13 ENSGT00390000015513.a.a.b #34 ENSGT00940000153321.b.b.l.b.b.a.b.b #35 ENSGT00940000153321.b.b.l.b.b.a.b.a #36 ENSGT00940000153321.b.b.l.b.b.a.a.b.b #37 ENSGT00940000153321.b.b.l.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.b ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.b.e ##37 ENSGT00940000153321.b.b.l.b.b.b.b.a ##37 ENSGT00390000010930.a ENSGT00940000153321.b.b.l.b.b.b.b.b.d ##37 ENSGT00390000010930.b ENSGT00940000153321.b.b.l.b.b.b.b.b.c ##37 ENSGT00940000153321.b.b.l.b.a.b ##37 ENSGT00940000153321.b.b.l.b.a.a.a.a ##37 ENSGT00940000153321.b.b.l.b.a.a.a.b ##37 ENSGT00940000153424.a.b ENSGT00800000125290 ENSGT00390000001195.a ENSGT00940000156859 ENSGT00490000043385 ENSGT00950000183043.a.b.b.a.a.a.b ##18 ENSGT00950000183043.a.b.b.a.b.u.b ##18 ENSGT00950000183043.a.b.b.a.b.u.a.b.a ##18 ENSGT00950000183043.a.b.b.a.b.u.a.b.b ##18 ENSGT00940000164141 ENSGT00530000063675.b ENSGT00390000002445 ENSGT00940000157707 ENSGT00940000155181 ENSGT00390000016025.a Mus_C ANCESTRAL SPECIES 10 ENSGT00390000015513.a.a.b #34 ENSGT00940000153321.b.b.l.b.b.a.b.b #35 ENSGT00940000153321.b.b.l.b.b.a.b.a #36 ENSGT00940000153321.b.b.l.b.b.a.a.b.b #37 ENSGT00940000153321.b.b.l.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.b ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.b.e ##37 ENSGT00940000153321.b.b.l.b.b.b.b.a ##37 ENSGT00390000010930.a ENSGT00940000153321.b.b.l.b.b.b.b.b.d ##37 ENSGT00390000010930.b ENSGT00940000153321.b.b.l.b.b.b.b.b.c ##37 ENSGT00940000153321.b.b.l.b.a.b ##37 ENSGT00940000153321.b.b.l.b.a.a.a.a ##37 ENSGT00940000153321.b.b.l.b.a.a.a.b ##37 ENSGT00940000153424.a.b ENSGT00800000125290 ENSGT00390000001195.a ENSGT00940000156859 ENSGT00490000043385 ENSGT00950000183043.a.b.b.a.a.a.b ##18 ENSGT00950000183043.a.b.b.a.b.u.b ##18 ENSGT00950000183043.a.b.b.a.b.u.a.b.a ##18 ENSGT00950000183043.a.b.b.a.b.u.a.b.b ##18 ENSGT00940000164141 ENSGT00530000063675.b ENSGT00390000002445 ENSGT00940000157707 ENSGT00940000155181 ENSGT00390000016025.a Steppe mouse MODERN SPECIES 3363 Ctsj (ENSMSIG00000021739) ##37 Tpbpa (ENSMSIG00000021726) Ctla2a (ENSMSIG00000021719) ##37 Tpbpb (ENSMSIG00000021690) Ctla2b (ENSMSIG00000021665) ##37 4930486L24Rik (ENSMSIG00000021647) ##37 Ctsll3 (ENSMSIG00000021625) ##37 BC051665 (ENSMSIG00000021609) ##37 Dapk1 (ENSMSIG00000021579) ENSMSIG00000021574 ENSMSIG00000021571 Gas1 (ENSMSIG00000021556) Tut7 (ENSMSIG00000021435) ENSMSIG00000021410 1700014D04Rik (ENSMSIG00000021396) ##18 Spata31d1d (ENSMSIG00000021387) ##18 Spata31d1b (ENSMSIG00000021379) ##18 Spata31d1a (ENSMSIG00000021365) ##18 4921517D22Rik (ENSMSIG00000021349) Golm1 (ENSMSIG00000021316) Naa35 (ENSMSIG00000021291) Agtpbp1 (ENSMSIG00000021104) Ntrk2 (ENSMSIG00000020750) spretus MODERN SPECIES 4 Fbp2 (MGP_SPRETEiJ_G0019510) #34 MGP_SPRETEiJ_G0019509 #35 Ctsm (MGP_SPRETEiJ_G0019508) #36 Cts7 (MGP_SPRETEiJ_G0019507) #37 Cts8 (MGP_SPRETEiJ_G0019506) ##37 Cts6 (MGP_SPRETEiJ_G0019505) ##37 Ctsr (MGP_SPRETEiJ_G0019504) ##37 Ctsq (MGP_SPRETEiJ_G0019503) ##37 Ctsj (MGP_SPRETEiJ_G0019502) ##37 MGP_SPRETEiJ_G0019501 Ctla2a (MGP_SPRETEiJ_G0019500) ##37 Tpbpb (MGP_SPRETEiJ_G0019499) Ctla2b (MGP_SPRETEiJ_G0019498) ##37 4930486L24Rik (MGP_SPRETEiJ_G0019497) ##37 Ctsll3 (MGP_SPRETEiJ_G0019496) ##37 BC051665 (MGP_SPRETEiJ_G0019495) ##37 Dapk1 (MGP_SPRETEiJ_G0019494) MGP_SPRETEiJ_G0019493 Gas1 (MGP_SPRETEiJ_G0019492) Tut7 (MGP_SPRETEiJ_G0019491) MGP_SPRETEiJ_G0019490 1700014D04Rik (MGP_SPRETEiJ_G0019489) ##18 Spata31d1d (MGP_SPRETEiJ_G0019488) ##18 Spata31d1a (MGP_SPRETEiJ_G0019487) ##18 4921517D22Rik (MGP_SPRETEiJ_G0019486) MGP_SPRETEiJ_G0019485 Naa35 (MGP_SPRETEiJ_G0019484) Agtpbp1 (MGP_SPRETEiJ_G0019483) Ntrk2 (MGP_SPRETEiJ_G0019482) Slc28a3 (MGP_SPRETEiJ_G0019481) Rmi1 (MGP_SPRETEiJ_G0019480) Mouse MODERN SPECIES 4 Gm49352 (ENSMUSG00000114904) Ctsm (ENSMUSG00000074871) #36 Cts7 (ENSMUSG00000021440) #37 Cts8 (ENSMUSG00000057446) ##37 Cts6 (ENSMUSG00000021441) ##37 Ctsr (ENSMUSG00000055679) ##37 Ctsq (ENSMUSG00000021439) ##37 Ctsj (ENSMUSG00000055298) ##37 Tpbpa (ENSMUSG00000033834) Ctla2a (ENSMUSG00000044258) ##37 Tpbpb (ENSMUSG00000062705) Gm49391 (ENSMUSG00000114432) Ctla2b (ENSMUSG00000074874) ##37 4930486L24Rik (ENSMUSG00000050345) ##37 Ctsll3 (ENSMUSG00000056728) ##37 BC051665 (ENSMUSG00000042243) ##37 Dapk1 (ENSMUSG00000021559) Gas1 (ENSMUSG00000052957) Tut7 (ENSMUSG00000035248) Isca1 (ENSMUSG00000044792) 1700014D04Rik (ENSMUSG00000051054) ##18 Spata31d1d (ENSMUSG00000043986) ##18 Spata31d1b (ENSMUSG00000091311) ##18 Spata31d1a (ENSMUSG00000050876) ##18 4921517D22Rik (ENSMUSG00000049902) Golm1 (ENSMUSG00000021556) Naa35 (ENSMUSG00000021555) Agtpbp1 (ENSMUSG00000021557) Ntrk2 (ENSMUSG00000055254) Slc28a3 (ENSMUSG00000021553) Rmi1 (ENSMUSG00000035367) Ryukyu mouse MODERN SPECIES 4 Fbp1 (MGP_CAROLIEiJ_G0018631) #33 Fbp2 (MGP_CAROLIEiJ_G0018630) #34 MGP_CAROLIEiJ_G0018629 #35 Ctsm (MGP_CAROLIEiJ_G0018628) #36 Cts7 (MGP_CAROLIEiJ_G0018627) #37 Cts8 (MGP_CAROLIEiJ_G0018626) ##37 Cts6 (MGP_CAROLIEiJ_G0018625) ##37 Ctsr (MGP_CAROLIEiJ_G0018624) ##37 Ctsj (MGP_CAROLIEiJ_G0018623) ##37 MGP_CAROLIEiJ_G0018622 Tpbpb (MGP_CAROLIEiJ_G0018621) MGP_CAROLIEiJ_G0018620 ##37 MGP_CAROLIEiJ_G0018619 ##37 4930486L24Rik (MGP_CAROLIEiJ_G0018618) ##37 Ctsll3 (MGP_CAROLIEiJ_G0018617) ##37 BC051665 (MGP_CAROLIEiJ_G0018616) ##37 Dapk1 (MGP_CAROLIEiJ_G0018615) MGP_CAROLIEiJ_G0018614 Gas1 (MGP_CAROLIEiJ_G0018613) Tut7 (MGP_CAROLIEiJ_G0018612) MGP_CAROLIEiJ_G0018611 1700014D04Rik (MGP_CAROLIEiJ_G0018610) ##18 Spata31d1d (MGP_CAROLIEiJ_G0018609) ##18 MGP_CAROLIEiJ_G0018608 ##18 MGP_CAROLIEiJ_G0018607 ##18 4921517D22Rik (MGP_CAROLIEiJ_G0018606) Golm1 (MGP_CAROLIEiJ_G0018605) MGP_CAROLIEiJ_G0018604 Agtpbp1 (MGP_CAROLIEiJ_G0018603) Ntrk2 (MGP_CAROLIEiJ_G0018602) Slc28a3 (MGP_CAROLIEiJ_G0018601) Shrew mouse MODERN SPECIES 7 Fbp1 (MGP_PahariEiJ_G0019695) #33 Fbp2 (MGP_PahariEiJ_G0019694) #34 MGP_PahariEiJ_G0019693 #35 MGP_PahariEiJ_G0019692 #36 Cts7 (MGP_PahariEiJ_G0019691) #37 Cts8 (MGP_PahariEiJ_G0019690) ##37 Cts6 (MGP_PahariEiJ_G0019689) ##37 Ctsr (MGP_PahariEiJ_G0019688) ##37 Ctsj (MGP_PahariEiJ_G0019687) ##37 MGP_PahariEiJ_G0019686 MGP_PahariEiJ_G0019685 MGP_PahariEiJ_G0019684 ##37 MGP_PahariEiJ_G0019683 ##37 4930486L24Rik (MGP_PahariEiJ_G0019682) ##37 Ctsll3 (MGP_PahariEiJ_G0019681) ##37 BC051665 (MGP_PahariEiJ_G0019680) ##37 Dapk1 (MGP_PahariEiJ_G0019679) MGP_PahariEiJ_G0019678 Gas1 (MGP_PahariEiJ_G0019677) Tut7 (MGP_PahariEiJ_G0019676) MGP_PahariEiJ_G0019675 1700014D04Rik (MGP_PahariEiJ_G0019674) ##18 Spata31d1d (MGP_PahariEiJ_G0019673) ##18 Spata31d1b (MGP_PahariEiJ_G0019672) ##18 MGP_PahariEiJ_G0019671 ##18 4921517D22Rik (MGP_PahariEiJ_G0019670) Golm1 (MGP_PahariEiJ_G0019669) Naa35 (MGP_PahariEiJ_G0019668) Agtpbp1 (MGP_PahariEiJ_G0019667) Ntrk2 (MGP_PahariEiJ_G0019666) Slc28a3 (MGP_PahariEiJ_G0019665) Rat MODERN SPECIES 8 Cts7 (ENSRNOG00000033540) #37 Cts8l1 (ENSRNOG00000065532) ##37 Cts8 (ENSRNOG00000040000) ##37 Ctsr (ENSRNOG00000017888) ##37 MGC114246 (ENSRNOG00000039990) ##37 AABR07043347.1 (ENSRNOG00000051410) Ctsq (ENSRNOG00000048693) ##37 LOC100364523 (ENSRNOG00000056519) ##37 Ctsql2 (ENSRNOG00000017946) ##37 Ctsj (ENSRNOG00000046476) ##37 RGD1564827 (ENSRNOG00000069712) #36 Tpbpa (ENSRNOG00000039975) Ctla2a (ENSRNOG00000039971) ##37 Testin (ENSRNOG00000018028) ##37 Ctsll3 (ENSRNOG00000069877) ##37 RGD1308751 (ENSRNOG00000039954) ##37 Dapk1 (ENSRNOG00000018198) Tut7 (ENSRNOG00000016629) Isca1 (ENSRNOG00000018343) AABR07026929.1 (ENSRNOG00000042026) ##18 Spata31d1 (ENSRNOG00000027014) ##18 Spata31d1b (ENSRNOG00000069288) ##18 Spata31d3 (ENSRNOG00000056413) ##18 LOC100912252 (ENSRNOG00000042206) Golm1 (ENSRNOG00000018400) Naa35 (ENSRNOG00000018417) ENSRNOG00000064986 Agtpbp1 (ENSRNOG00000018651) Ntrk2 (ENSRNOG00000018839) Slc28a3 (ENSRNOG00000018853) Rmi1 (ENSRNOG00000019108) Muroidea_A ANCESTRAL SPECIES ENSGT00940000153321.b.b.l.b.a.a.b ##37 Cricetidae ANCESTRAL SPECIES ENSGT00940000153321.b.b.l.b.a.a.b ##37 Cricetinae ANCESTRAL SPECIES ENSGT00940000153321.b.b.l.b.a.a.b ##37 Chinese hamster chok1gshd DUPLICATION Chinese hamster chok1gshd MODERN SPECIES 317 ENSCGRG00001022738 #29 ENSCGRG00001008618 Ptch1 (ENSCGRG00001010176) #30 Fancc (ENSCGRG00001013491) #31 Aopep (ENSCGRG00001012713) #32 Fbp1 (ENSCGRG00001009150) #33 Fbp2 (ENSCGRG00001022515) #34 Cts8 (ENSCGRG00001013704) ##37 Cts6 (ENSCGRG00001022925) ##37 Ctsq (ENSCGRG00001002399) ##37 Ctsj (ENSCGRG00001024764) ##37 ENSCGRG00001015895 ##37 ENSCGRG00001024602 ##37 4930486L24Rik (ENSCGRG00001023066) ##37 ENSCGRG00001019274 ##37 ENSCGRG00001014152 ##37 BC051665 (ENSCGRG00001008665) ##37 Dapk1 (ENSCGRG00001000497) Gas1 (ENSCGRG00001010171) Tut7 (ENSCGRG00001020605) ENSCGRG00001007037 1700014D04Rik (ENSCGRG00001022165) ##18 Spata31d1d (ENSCGRG00001011836) ##18 ENSCGRG00001001460 Golm1 (ENSCGRG00001021525) ENSCGRG00001022085 Agtpbp1 (ENSCGRG00001021345) ENSCGRG00001013499 ENSCGRG00001012376 Slc28a3 (ENSCGRG00001020206) Rmi1 (ENSCGRG00001004591) Chinese hamster chok1gshd MODERN SPECIES 317 Slc28a3 (ENSCGRG00001020206) ENSCGRG00001012376 ENSCGRG00001013499 Agtpbp1 (ENSCGRG00001021345) ENSCGRG00001022085 Golm1 (ENSCGRG00001021525) ENSCGRG00001001460 Spata31d1d (ENSCGRG00001011836) ##18 1700014D04Rik (ENSCGRG00001022165) ##18 ENSCGRG00001007037 Tut7 (ENSCGRG00001020605) Gas1 (ENSCGRG00001010171) Dapk1 (ENSCGRG00001000497) BC051665 (ENSCGRG00001008665) ##37 ENSCGRG00001014152 ##37 ENSCGRG00001019274 ##37 4930486L24Rik (ENSCGRG00001023066) ##37 ENSCGRG00001024602 ##37 ENSCGRG00001015895 ##37 Ctsj (ENSCGRG00001024764) ##37 Ctsq (ENSCGRG00001002399) ##37 Cts6 (ENSCGRG00001022925) ##37 Cts8 (ENSCGRG00001013704) ##37 Fbp2 (ENSCGRG00001022515) #34 Fbp1 (ENSCGRG00001009150) #33 Aopep (ENSCGRG00001012713) #32 Fancc (ENSCGRG00001013491) #31 Ptch1 (ENSCGRG00001010176) #30 ENSCGRG00001008618 ENSCGRG00001022738 #29 Hsd17b3 (ENSCGRG00001009870) #28 Muroidea_A ANCESTRAL SPECIES 14 ENSGT00940000160266 #28 ENSGT00940000161328 #29 ENSGT00940000159011 #30 ENSGT00390000016390 #31 ENSGT00940000155211 #32 ENSGT00390000015513.a.a.a #33 ENSGT00390000015513.a.a.b #34 ENSGT00940000153321.b.b.l.b.b.a.b #36 ENSGT00940000153321.b.b.l.b.b.a.a.b #37 ENSGT00940000153321.b.b.l.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.b ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.b ##37 ENSGT00940000153321.b.b.l.b.b.b.b.a ##37 ENSGT00940000153321.b.b.l.b.b.b.b.b ##37 ENSGT00940000153321.b.b.l.b.a.b ##37 ENSGT00940000153321.b.b.l.b.a.a.a.a ##37 ENSGT00940000153321.b.b.l.b.a.a.a.b ##37 ENSGT00940000153424.a.b ENSGT00390000001195.a ENSGT00940000156859 ENSGT00490000043385 ENSGT00950000183043.a.b.b.a.a.a.b ##18 ENSGT00950000183043.a.b.b.a.b.u.b ##18 ENSGT00940000164141 ENSGT00530000063675.b ENSGT00390000002445 ENSGT00940000157707 ENSGT00940000155181 ENSGT00390000016025.a ENSGT00940000161055 Cricetidae ANCESTRAL SPECIES 22 ENSGT00940000160266 #28 ENSGT00940000161328 #29 ENSGT00940000159011 #30 ENSGT00390000016390 #31 ENSGT00940000155211 #32 ENSGT00390000015513.a.a.a #33 ENSGT00390000015513.a.a.b #34 ENSGT00940000153321.b.b.l.b.b.a.b #36 ENSGT00940000153321.b.b.l.b.b.a.a.b #37 ENSGT00940000153321.b.b.l.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.b ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.b ##37 ENSGT00940000153321.b.b.l.b.b.b.b.a ##37 ENSGT00940000153321.b.b.l.b.b.b.b.b.b ##37 ENSGT00940000153321.b.b.l.b.a.b ##37 ENSGT00940000153321.b.b.l.b.a.a.a.a ##37 ENSGT00940000153321.b.b.l.b.a.a.a.b ##37 ENSGT00940000153424.a.b ENSGT00390000001195.a ENSGT00940000156859 ENSGT00490000043385 ENSGT00950000183043.a.b.b.a.a.a.b ##18 ENSGT00950000183043.a.b.b.a.b.u.b ##18 ENSGT00940000164141 ENSGT00530000063675.b ENSGT00390000002445 ENSGT00940000157707 ENSGT00940000155181 ENSGT00390000016025.a ENSGT00940000161055 Cricetidae_B ANCESTRAL SPECIES 22 ENSGT00940000160266 #28 ENSGT00940000161328 #29 ENSGT00940000159011 #30 ENSGT00390000016390 #31 ENSGT00940000155211 #32 ENSGT00390000015513.a.a.a #33 ENSGT00390000015513.a.a.b #34 ENSGT00940000153321.b.b.l.b.b.a.b #36 ENSGT00940000153321.b.b.l.b.b.a.a.b #37 ENSGT00940000153321.b.b.l.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.b ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.b ##37 ENSGT00940000153321.b.b.l.b.b.b.b.a ##37 ENSGT00940000153321.b.b.l.b.b.b.b.b.a ##37 ENSGT00940000153321.b.b.l.b.a.b ##37 ENSGT00940000153321.b.b.l.b.a.a.a.a ##37 ENSGT00940000153321.b.b.l.b.a.a.a.b ##37 ENSGT00940000153424.a.b ENSGT00390000001195.a ENSGT00940000156859 ENSGT00490000043385 ENSGT00950000183043.a.b.b.a.a.a.b ##18 ENSGT00950000183043.a.b.b.a.b.u.a.b ##18 ENSGT00940000164141 ENSGT00530000063675.b ENSGT00390000002445 ENSGT00940000157707 ENSGT00940000155181 ENSGT00390000016025.a ENSGT00940000161055 Northern American deer mouse MODERN SPECIES 18 ENSPEMG00000030384 #37 ENSPEMG00000027810 #37 Cts8 (ENSPEMG00000021957) ##37 Cts6 (ENSPEMG00000016021) ##37 Ctsr (ENSPEMG00000001393) ##37 ENSPEMG00000029752 ##37 ENSPEMG00000026728 ##37 Ctsj (ENSPEMG00000015113) ##37 ENSPEMG00000031098 ENSPEMG00000020375 ENSPEMG00000026470 ENSPEMG00000030527 ##37 ENSPEMG00000026019 ##37 ENSPEMG00000028441 ##37 ENSPEMG00000022155 ##37 4930486L24Rik (ENSPEMG00000016874) ##37 Ctsll3 (ENSPEMG00000029464) ##37 BC051665 (ENSPEMG00000025235) ##37 Dapk1 (ENSPEMG00000022627) Gas1 (ENSPEMG00000007789) Tut7 (ENSPEMG00000014030) ENSPEMG00000029941 ENSPEMG00000028848 ##18 ENSPEMG00000025105 ##18 ENSPEMG00000025782 ##18 4921517D22Rik (ENSPEMG00000022165) Golm1 (ENSPEMG00000021119) Naa35 (ENSPEMG00000020283) Agtpbp1 (ENSPEMG00000003465) ENSPEMG00000030036 Ntrk2 (ENSPEMG00000000060) Prairie vole MODERN SPECIES 3 Ptch1 (ENSMOCG00000022943) #30 Fancc (ENSMOCG00000001776) #31 Aopep (ENSMOCG00000003056) #32 Fbp1 (ENSMOCG00000014907) #33 Fbp2 (ENSMOCG00000017815) #34 ENSMOCG00000010780 #36 Cts7 (ENSMOCG00000001845) #37 Cts8 (ENSMOCG00000005191) ##37 ENSMOCG00000020961 ##37 ENSMOCG00000013109 ##37 ENSMOCG00000000781 ##37 Ctsj (ENSMOCG00000013146) ##37 4930486L24Rik (ENSMOCG00000005874) ##37 ENSMOCG00000019948 ##37 ENSMOCG00000012620 ##37 Dapk1 (ENSMOCG00000016789) Gas1 (ENSMOCG00000002738) ENSMOCG00000022892 ENSMOCG00000007812 ENSMOCG00000000209 ENSMOCG00000000876 ##18 4921517D22Rik (ENSMOCG00000022999) ENSMOCG00000019507 Naa35 (ENSMOCG00000013999) Agtpbp1 (ENSMOCG00000014650) Ntrk2 (ENSMOCG00000015461) Slc28a3 (ENSMOCG00000005269) Rmi1 (ENSMOCG00000016761) Cricetinae ANCESTRAL SPECIES 20 ENSGT00670000098074 #26 ENSGT00940000160237 #27 ENSGT00940000160266 #28 ENSGT00940000161328 #29 ENSGT00940000159011 #30 ENSGT00390000016390 #31 ENSGT00940000155211 #32 ENSGT00390000015513.a.a.a #33 ENSGT00390000015513.a.a.b #34 ENSGT00940000153321.b.b.l.b.b.a.a.b #37 ENSGT00940000153321.b.b.l.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.b ##37 ENSGT00940000153321.b.b.l.b.b.b.a.b ##37 ENSGT00940000153321.b.b.l.b.b.b.b.a ##37 ENSGT00940000153321.b.b.l.b.b.b.b.b.b ##37 ENSGT00940000153321.b.b.l.b.a.b ##37 ENSGT00940000153321.b.b.l.b.a.a.a.a ##37 ENSGT00940000153321.b.b.l.b.a.a.a.b ##37 ENSGT00940000153424.a.b ENSGT00390000001195.a ENSGT00940000156859 ENSGT00490000043385 ENSGT00950000183043.a.b.b.a.a.a.b ##18 ENSGT00950000183043.a.b.b.a.b.u.b ##18 ENSGT00940000164141 ENSGT00530000063675.b ENSGT00390000002445 ENSGT00940000157707 ENSGT00940000155181 ENSGT00390000016025.a ENSGT00940000161055 Chinese hamster chok1gshd MODERN SPECIES 317 Slc35d2 (ENSCGRG00001020192) #27 Hsd17b3 (ENSCGRG00001009870) #28 ENSCGRG00001022738 #29 ENSCGRG00001008618 Ptch1 (ENSCGRG00001010176) #30 Fancc (ENSCGRG00001013491) #31 Aopep (ENSCGRG00001012713) #32 Fbp1 (ENSCGRG00001009150) #33 Fbp2 (ENSCGRG00001022515) #34 Cts8 (ENSCGRG00001013704) ##37 Cts6 (ENSCGRG00001022925) ##37 Ctsq (ENSCGRG00001002399) ##37 Ctsj (ENSCGRG00001024764) ##37 ENSCGRG00001015895 ##37 ENSCGRG00001024602 ##37 4930486L24Rik (ENSCGRG00001023066) ##37 ENSCGRG00001019274 ##37 ENSCGRG00001014152 ##37 BC051665 (ENSCGRG00001008665) ##37 Dapk1 (ENSCGRG00001000497) Gas1 (ENSCGRG00001010171) Tut7 (ENSCGRG00001020605) ENSCGRG00001007037 1700014D04Rik (ENSCGRG00001022165) ##18 Spata31d1d (ENSCGRG00001011836) ##18 ENSCGRG00001001460 Golm1 (ENSCGRG00001021525) ENSCGRG00001022085 Agtpbp1 (ENSCGRG00001021345) ENSCGRG00001013499 ENSCGRG00001012376 Murinae ANCESTRAL SPECIES 21 ENSGT00940000161328 #29 ENSGT00940000159011 #30 ENSGT00390000016390 #31 ENSGT00940000155211 #32 ENSGT00390000015513.a.a.a #33 ENSGT00390000015513.a.a.b #34 ENSGT00940000153321.b.b.l.b.b.a.b #36 ENSGT00940000153321.b.b.l.b.b.a.a.b.b #37 ENSGT00940000153321.b.b.l.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.b ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.b.e ##37 ENSGT00940000153321.b.b.l.b.b.b.b.a ##37 ENSGT00390000010930 ENSGT00940000153321.b.b.l.b.b.b.b.b ##37 ENSGT00940000153321.b.b.l.b.a.b ##37 ENSGT00940000153321.b.b.l.b.a.a.a.a ##37 ENSGT00940000153321.b.b.l.b.a.a.a.b ##37 ENSGT00940000153424.a.b ENSGT00390000001195.a ENSGT00940000156859 ENSGT00490000043385 ENSGT00950000183043.a.b.b.a.a.a.b ##18 ENSGT00950000183043.a.b.b.a.b.u.b ##18 ENSGT00950000183043.a.b.b.a.b.u.a.b.a ##18 ENSGT00950000183043.a.b.b.a.b.u.a.b.b ##18 ENSGT00940000164141 ENSGT00530000063675.b ENSGT00390000002445 ENSGT00940000157707 ENSGT00940000155181 Mus ANCESTRAL SPECIES 18 ENSGT00940000159011 #30 ENSGT00390000016390 #31 ENSGT00940000155211 #32 ENSGT00390000015513.a.a.a #33 ENSGT00390000015513.a.a.b #34 ENSGT00940000153321.b.b.l.b.b.a.b.b #35 ENSGT00940000153321.b.b.l.b.b.a.b.a #36 ENSGT00940000153321.b.b.l.b.b.a.a.b.b #37 ENSGT00940000153321.b.b.l.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.b ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.b.e ##37 ENSGT00940000153321.b.b.l.b.b.b.b.a ##37 ENSGT00390000010930.a ENSGT00940000153321.b.b.l.b.b.b.b.b ##37 ENSGT00940000153321.b.b.l.b.a.b ##37 ENSGT00940000153321.b.b.l.b.a.a.a.a ##37 ENSGT00940000153321.b.b.l.b.a.a.a.b ##37 ENSGT00940000153424.a.b ENSGT00800000125290 ENSGT00390000001195.a ENSGT00940000156859 ENSGT00490000043385 ENSGT00950000183043.a.b.b.a.a.a.b ##18 ENSGT00950000183043.a.b.b.a.b.u.b ##18 ENSGT00950000183043.a.b.b.a.b.u.a.b.a ##18 ENSGT00950000183043.a.b.b.a.b.u.a.b.b ##18 ENSGT00940000164141 ENSGT00530000063675.b ENSGT00390000002445 ENSGT00940000157707 Mus_A ANCESTRAL SPECIES 14 ENSGT00390000016390 #31 ENSGT00940000155211 #32 ENSGT00390000015513.a.a.a #33 ENSGT00390000015513.a.a.b #34 ENSGT00940000153321.b.b.l.b.b.a.b.b #35 ENSGT00940000153321.b.b.l.b.b.a.b.a #36 ENSGT00940000153321.b.b.l.b.b.a.a.b.b #37 ENSGT00940000153321.b.b.l.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.b ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.b.e ##37 ENSGT00940000153321.b.b.l.b.b.b.b.a ##37 ENSGT00390000010930.a ENSGT00390000010930.b ENSGT00940000153321.b.b.l.b.b.b.b.b ##37 ENSGT00940000153321.b.b.l.b.a.b ##37 ENSGT00940000153321.b.b.l.b.a.a.a.a ##37 ENSGT00940000153321.b.b.l.b.a.a.a.b ##37 ENSGT00940000153424.a.b ENSGT00800000125290 ENSGT00390000001195.a ENSGT00940000156859 ENSGT00490000043385 ENSGT00950000183043.a.b.b.a.a.a.b ##18 ENSGT00950000183043.a.b.b.a.b.u.b ##18 ENSGT00950000183043.a.b.b.a.b.u.a.b.a ##18 ENSGT00950000183043.a.b.b.a.b.u.a.b.b ##18 ENSGT00940000164141 ENSGT00530000063675.b ENSGT00390000002445 ENSGT00940000157707 Mus_B ANCESTRAL SPECIES 13 ENSGT00940000155211 #32 ENSGT00390000015513.a.a.a #33 ENSGT00390000015513.a.a.b #34 ENSGT00940000153321.b.b.l.b.b.a.b.b #35 ENSGT00940000153321.b.b.l.b.b.a.b.a #36 ENSGT00940000153321.b.b.l.b.b.a.a.b.b #37 ENSGT00940000153321.b.b.l.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.b ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.b.e ##37 ENSGT00940000153321.b.b.l.b.b.b.b.a ##37 ENSGT00390000010930.a ENSGT00940000153321.b.b.l.b.b.b.b.b.d ##37 ENSGT00390000010930.b ENSGT00940000153321.b.b.l.b.b.b.b.b.c ##37 ENSGT00940000153321.b.b.l.b.a.b ##37 ENSGT00940000153321.b.b.l.b.a.a.a.a ##37 ENSGT00940000153321.b.b.l.b.a.a.a.b ##37 ENSGT00940000153424.a.b ENSGT00800000125290 ENSGT00390000001195.a ENSGT00940000156859 ENSGT00490000043385 ENSGT00950000183043.a.b.b.a.a.a.b ##18 ENSGT00950000183043.a.b.b.a.b.u.b ##18 ENSGT00950000183043.a.b.b.a.b.u.a.b.a ##18 ENSGT00950000183043.a.b.b.a.b.u.a.b.b ##18 ENSGT00940000164141 ENSGT00530000063675.b ENSGT00390000002445 ENSGT00940000157707 Mouse MODERN SPECIES 4 Zfp808 (ENSMUSG00000074867) Cts3 (ENSMUSG00000074870) #35 Gm49352 (ENSMUSG00000114904) Ctsm (ENSMUSG00000074871) #36 Cts7 (ENSMUSG00000021440) #37 Cts8 (ENSMUSG00000057446) ##37 Cts6 (ENSMUSG00000021441) ##37 Ctsr (ENSMUSG00000055679) ##37 Ctsq (ENSMUSG00000021439) ##37 Ctsj (ENSMUSG00000055298) ##37 Tpbpa (ENSMUSG00000033834) Ctla2a (ENSMUSG00000044258) ##37 Tpbpb (ENSMUSG00000062705) Gm49391 (ENSMUSG00000114432) Ctla2b (ENSMUSG00000074874) ##37 4930486L24Rik (ENSMUSG00000050345) ##37 Ctsll3 (ENSMUSG00000056728) ##37 BC051665 (ENSMUSG00000042243) ##37 Dapk1 (ENSMUSG00000021559) Gas1 (ENSMUSG00000052957) Tut7 (ENSMUSG00000035248) Isca1 (ENSMUSG00000044792) 1700014D04Rik (ENSMUSG00000051054) ##18 Spata31d1d (ENSMUSG00000043986) ##18 Spata31d1b (ENSMUSG00000091311) ##18 Spata31d1a (ENSMUSG00000050876) ##18 4921517D22Rik (ENSMUSG00000049902) Golm1 (ENSMUSG00000021556) Naa35 (ENSMUSG00000021555) Agtpbp1 (ENSMUSG00000021557) Ntrk2 (ENSMUSG00000055254) Mus_C ANCESTRAL SPECIES 10 ENSGT00940000155211 #32 ENSGT00390000015513.a.a.a #33 ENSGT00390000015513.a.a.b #34 ENSGT00940000153321.b.b.l.b.b.a.b.b #35 ENSGT00940000153321.b.b.l.b.b.a.b.a #36 ENSGT00940000153321.b.b.l.b.b.a.a.b.b #37 ENSGT00940000153321.b.b.l.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.b ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.b.e ##37 ENSGT00940000153321.b.b.l.b.b.b.b.a ##37 ENSGT00390000010930.a ENSGT00940000153321.b.b.l.b.b.b.b.b.d ##37 ENSGT00390000010930.b ENSGT00940000153321.b.b.l.b.b.b.b.b.c ##37 ENSGT00940000153321.b.b.l.b.a.b ##37 ENSGT00940000153321.b.b.l.b.a.a.a.a ##37 ENSGT00940000153321.b.b.l.b.a.a.a.b ##37 ENSGT00940000153424.a.b ENSGT00800000125290 ENSGT00390000001195.a ENSGT00940000156859 ENSGT00490000043385 ENSGT00950000183043.a.b.b.a.a.a.b ##18 ENSGT00950000183043.a.b.b.a.b.u.b ##18 ENSGT00950000183043.a.b.b.a.b.u.a.b.a ##18 ENSGT00950000183043.a.b.b.a.b.u.a.b.b ##18 ENSGT00940000164141 ENSGT00530000063675.b ENSGT00390000002445 ENSGT00940000157707 Steppe mouse MODERN SPECIES 3363 Ctsj (ENSMSIG00000021739) ##37 Tpbpa (ENSMSIG00000021726) Ctla2a (ENSMSIG00000021719) ##37 Tpbpb (ENSMSIG00000021690) Ctla2b (ENSMSIG00000021665) ##37 4930486L24Rik (ENSMSIG00000021647) ##37 Ctsll3 (ENSMSIG00000021625) ##37 BC051665 (ENSMSIG00000021609) ##37 Dapk1 (ENSMSIG00000021579) ENSMSIG00000021574 ENSMSIG00000021571 Gas1 (ENSMSIG00000021556) Tut7 (ENSMSIG00000021435) ENSMSIG00000021410 1700014D04Rik (ENSMSIG00000021396) ##18 Spata31d1d (ENSMSIG00000021387) ##18 Spata31d1b (ENSMSIG00000021379) ##18 Spata31d1a (ENSMSIG00000021365) ##18 4921517D22Rik (ENSMSIG00000021349) Golm1 (ENSMSIG00000021316) Naa35 (ENSMSIG00000021291) spretus MODERN SPECIES 4 Aopep (MGP_SPRETEiJ_G0019512) #32 Fbp1 (MGP_SPRETEiJ_G0019511) #33 Fbp2 (MGP_SPRETEiJ_G0019510) #34 MGP_SPRETEiJ_G0019509 #35 Ctsm (MGP_SPRETEiJ_G0019508) #36 Cts7 (MGP_SPRETEiJ_G0019507) #37 Cts8 (MGP_SPRETEiJ_G0019506) ##37 Cts6 (MGP_SPRETEiJ_G0019505) ##37 Ctsr (MGP_SPRETEiJ_G0019504) ##37 Ctsq (MGP_SPRETEiJ_G0019503) ##37 Ctsj (MGP_SPRETEiJ_G0019502) ##37 MGP_SPRETEiJ_G0019501 Ctla2a (MGP_SPRETEiJ_G0019500) ##37 Tpbpb (MGP_SPRETEiJ_G0019499) Ctla2b (MGP_SPRETEiJ_G0019498) ##37 4930486L24Rik (MGP_SPRETEiJ_G0019497) ##37 Ctsll3 (MGP_SPRETEiJ_G0019496) ##37 BC051665 (MGP_SPRETEiJ_G0019495) ##37 Dapk1 (MGP_SPRETEiJ_G0019494) MGP_SPRETEiJ_G0019493 Gas1 (MGP_SPRETEiJ_G0019492) Tut7 (MGP_SPRETEiJ_G0019491) MGP_SPRETEiJ_G0019490 1700014D04Rik (MGP_SPRETEiJ_G0019489) ##18 Spata31d1d (MGP_SPRETEiJ_G0019488) ##18 Spata31d1a (MGP_SPRETEiJ_G0019487) ##18 4921517D22Rik (MGP_SPRETEiJ_G0019486) MGP_SPRETEiJ_G0019485 Naa35 (MGP_SPRETEiJ_G0019484) Agtpbp1 (MGP_SPRETEiJ_G0019483) Ntrk2 (MGP_SPRETEiJ_G0019482) Ryukyu mouse MODERN SPECIES 4 Fancc (MGP_CAROLIEiJ_G0018633) #31 Aopep (MGP_CAROLIEiJ_G0018632) #32 Fbp1 (MGP_CAROLIEiJ_G0018631) #33 Fbp2 (MGP_CAROLIEiJ_G0018630) #34 MGP_CAROLIEiJ_G0018629 #35 Ctsm (MGP_CAROLIEiJ_G0018628) #36 Cts7 (MGP_CAROLIEiJ_G0018627) #37 Cts8 (MGP_CAROLIEiJ_G0018626) ##37 Cts6 (MGP_CAROLIEiJ_G0018625) ##37 Ctsr (MGP_CAROLIEiJ_G0018624) ##37 Ctsj (MGP_CAROLIEiJ_G0018623) ##37 MGP_CAROLIEiJ_G0018622 Tpbpb (MGP_CAROLIEiJ_G0018621) MGP_CAROLIEiJ_G0018620 ##37 MGP_CAROLIEiJ_G0018619 ##37 4930486L24Rik (MGP_CAROLIEiJ_G0018618) ##37 Ctsll3 (MGP_CAROLIEiJ_G0018617) ##37 BC051665 (MGP_CAROLIEiJ_G0018616) ##37 Dapk1 (MGP_CAROLIEiJ_G0018615) MGP_CAROLIEiJ_G0018614 Gas1 (MGP_CAROLIEiJ_G0018613) Tut7 (MGP_CAROLIEiJ_G0018612) MGP_CAROLIEiJ_G0018611 1700014D04Rik (MGP_CAROLIEiJ_G0018610) ##18 Spata31d1d (MGP_CAROLIEiJ_G0018609) ##18 MGP_CAROLIEiJ_G0018608 ##18 MGP_CAROLIEiJ_G0018607 ##18 4921517D22Rik (MGP_CAROLIEiJ_G0018606) Golm1 (MGP_CAROLIEiJ_G0018605) MGP_CAROLIEiJ_G0018604 Agtpbp1 (MGP_CAROLIEiJ_G0018603) Shrew mouse MODERN SPECIES 7 Fancc (MGP_PahariEiJ_G0019697) #31 Aopep (MGP_PahariEiJ_G0019696) #32 Fbp1 (MGP_PahariEiJ_G0019695) #33 Fbp2 (MGP_PahariEiJ_G0019694) #34 MGP_PahariEiJ_G0019693 #35 MGP_PahariEiJ_G0019692 #36 Cts7 (MGP_PahariEiJ_G0019691) #37 Cts8 (MGP_PahariEiJ_G0019690) ##37 Cts6 (MGP_PahariEiJ_G0019689) ##37 Ctsr (MGP_PahariEiJ_G0019688) ##37 Ctsj (MGP_PahariEiJ_G0019687) ##37 MGP_PahariEiJ_G0019686 MGP_PahariEiJ_G0019685 MGP_PahariEiJ_G0019684 ##37 MGP_PahariEiJ_G0019683 ##37 4930486L24Rik (MGP_PahariEiJ_G0019682) ##37 Ctsll3 (MGP_PahariEiJ_G0019681) ##37 BC051665 (MGP_PahariEiJ_G0019680) ##37 Dapk1 (MGP_PahariEiJ_G0019679) MGP_PahariEiJ_G0019678 Gas1 (MGP_PahariEiJ_G0019677) Tut7 (MGP_PahariEiJ_G0019676) MGP_PahariEiJ_G0019675 1700014D04Rik (MGP_PahariEiJ_G0019674) ##18 Spata31d1d (MGP_PahariEiJ_G0019673) ##18 Spata31d1b (MGP_PahariEiJ_G0019672) ##18 MGP_PahariEiJ_G0019671 ##18 4921517D22Rik (MGP_PahariEiJ_G0019670) Golm1 (MGP_PahariEiJ_G0019669) Naa35 (MGP_PahariEiJ_G0019668) Agtpbp1 (MGP_PahariEiJ_G0019667) Rat MODERN SPECIES 8 Ctsm (ENSRNOG00000065730) #36 RGD1564657 (ENSRNOG00000050474) ##37 Cts7 (ENSRNOG00000033540) #37 Cts8l1 (ENSRNOG00000065532) ##37 Cts8 (ENSRNOG00000040000) ##37 Ctsr (ENSRNOG00000017888) ##37 MGC114246 (ENSRNOG00000039990) ##37 AABR07043347.1 (ENSRNOG00000051410) Ctsq (ENSRNOG00000048693) ##37 LOC100364523 (ENSRNOG00000056519) ##37 Ctsql2 (ENSRNOG00000017946) ##37 Ctsj (ENSRNOG00000046476) ##37 RGD1564827 (ENSRNOG00000069712) #36 Tpbpa (ENSRNOG00000039975) Ctla2a (ENSRNOG00000039971) ##37 Testin (ENSRNOG00000018028) ##37 Ctsll3 (ENSRNOG00000069877) ##37 RGD1308751 (ENSRNOG00000039954) ##37 Dapk1 (ENSRNOG00000018198) Tut7 (ENSRNOG00000016629) Isca1 (ENSRNOG00000018343) AABR07026929.1 (ENSRNOG00000042026) ##18 Spata31d1 (ENSRNOG00000027014) ##18 Spata31d1b (ENSRNOG00000069288) ##18 Spata31d3 (ENSRNOG00000056413) ##18 LOC100912252 (ENSRNOG00000042206) Golm1 (ENSRNOG00000018400) Naa35 (ENSRNOG00000018417) ENSRNOG00000064986 Agtpbp1 (ENSRNOG00000018651) Ntrk2 (ENSRNOG00000018839) Upper Galilee mountains blind mole rat DUPLICATION Upper Galilee mountains blind mole rat MODERN SPECIES 827 Naa35 (ENSNGAG00000012706) ENSNGAG00000010869 ENSNGAG00000006724 #37 ENSNGAG00000001073 #37 ENSNGAG00000023443 ##37 ENSNGAG00000023296 ##37 Dapk1 (ENSNGAG00000023610) ENSNGAG00000016586 ENSNGAG00000012268 ENSNGAG00000021770 ENSNGAG00000022758 ENSNGAG00000022920 Upper Galilee mountains blind mole rat MODERN SPECIES 827 Naa35 (ENSNGAG00000012706) ENSNGAG00000010869 ENSNGAG00000006724 #37 ENSNGAG00000001073 #37 ENSNGAG00000023443 ##37 ENSNGAG00000023296 ##37 Dapk1 (ENSNGAG00000023610) ENSNGAG00000016586 ENSNGAG00000012268 ENSNGAG00000021770 ENSNGAG00000022758 ENSNGAG00000022920 Muroidea ANCESTRAL SPECIES 72 ENSGT00940000160228 #19 ENSGT00530000069333.a #20 ENSGT00940000154367.a ENSGT00510000048363 #23 ENSGT00940000155950 #24 ENSGT00520000055591.b #25 ENSGT00670000098074 #26 ENSGT00940000160237 #27 ENSGT00940000160266 #28 ENSGT00940000161328 #29 ENSGT00940000159011 #30 ENSGT00390000016390 #31 ENSGT00940000155211 #32 ENSGT00390000015513.a.a.a #33 ENSGT00390000015513.a.a.b #34 ENSGT00940000153321.b.b.l.b.b #37 ENSGT00940000153321.b.b.l.b.a ##37 ENSGT00940000153424.a.b ENSGT00390000001195.a ENSGT00940000156859 ENSGT00490000043385 ENSGT00940000164141 ENSGT00530000063675.b ENSGT00390000002445 ENSGT00940000157707 ENSGT00940000155181 ENSGT00390000016025.a ENSGT00940000161055 ENSGT00940000153434.a.a ENSGT00390000002374 ENSGT00940000157487 Muroidea_A DUPLICATION Muroidea_A DUPLICATION Muroidea_A DUPLICATION Muroidea_A ANCESTRAL SPECIES 14 ENSGT00940000154367.a ENSGT00510000048363 #23 ENSGT00940000155950 #24 ENSGT00520000055591.b #25 ENSGT00670000098074 #26 ENSGT00940000160237 #27 ENSGT00940000160266 #28 ENSGT00940000161328 #29 ENSGT00940000159011 #30 ENSGT00390000016390 #31 ENSGT00940000155211 #32 ENSGT00390000015513.a.a.a #33 ENSGT00390000015513.a.a.b #34 ENSGT00940000153321.b.b.l.b.b.a.b #36 ENSGT00940000153321.b.b.l.b.b.a.a.b #37 ENSGT00940000153321.b.b.l.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.b ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.b ##37 ENSGT00940000153321.b.b.l.b.b.b.b.a ##37 ENSGT00940000153321.b.b.l.b.b.b.b.b ##37 ENSGT00940000153321.b.b.l.b.a.b ##37 ENSGT00940000153321.b.b.l.b.a.a.a.a ##37 ENSGT00940000153321.b.b.l.b.a.a.a.b ##37 ENSGT00940000153424.a.b ENSGT00390000001195.a ENSGT00940000156859 ENSGT00490000043385 ENSGT00950000183043.a.b.b.a.a.a.b ##18 ENSGT00950000183043.a.b.b.a.b.u.b ##18 ENSGT00940000164141 Cricetidae ANCESTRAL SPECIES 22 ENSGT00940000154367.a ENSGT00510000048363 #23 ENSGT00940000155950 #24 ENSGT00520000055591.b #25 ENSGT00670000098074 #26 ENSGT00940000160237 #27 ENSGT00940000160266 #28 ENSGT00940000161328 #29 ENSGT00940000159011 #30 ENSGT00390000016390 #31 ENSGT00940000155211 #32 ENSGT00390000015513.a.a.a #33 ENSGT00390000015513.a.a.b #34 ENSGT00940000153321.b.b.l.b.b.a.b #36 ENSGT00940000153321.b.b.l.b.b.a.a.b #37 ENSGT00940000153321.b.b.l.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.b ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.b ##37 ENSGT00940000153321.b.b.l.b.b.b.b.a ##37 ENSGT00940000153321.b.b.l.b.b.b.b.b.b ##37 ENSGT00940000153321.b.b.l.b.a.b ##37 ENSGT00940000153321.b.b.l.b.a.a.a.a ##37 ENSGT00940000153321.b.b.l.b.a.a.a.b ##37 ENSGT00940000153424.a.b ENSGT00390000001195.a ENSGT00940000156859 ENSGT00490000043385 ENSGT00950000183043.a.b.b.a.a.a.b ##18 ENSGT00950000183043.a.b.b.a.b.u.b ##18 ENSGT00940000164141 Cricetidae_B ANCESTRAL SPECIES 22 ENSGT00940000154367.a ENSGT00510000048363 #23 ENSGT00940000155950 #24 ENSGT00520000055591.b #25 ENSGT00670000098074 #26 ENSGT00940000160237 #27 ENSGT00940000160266 #28 ENSGT00940000161328 #29 ENSGT00940000159011 #30 ENSGT00390000016390 #31 ENSGT00940000155211 #32 ENSGT00390000015513.a.a.a #33 ENSGT00390000015513.a.a.b #34 ENSGT00940000153321.b.b.l.b.b.a.b #36 ENSGT00940000153321.b.b.l.b.b.a.a.b #37 ENSGT00940000153321.b.b.l.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.b ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.b ##37 ENSGT00940000153321.b.b.l.b.b.b.b.a ##37 ENSGT00940000153321.b.b.l.b.b.b.b.b.a ##37 ENSGT00940000153321.b.b.l.b.a.b ##37 ENSGT00940000153321.b.b.l.b.a.a.a.a ##37 ENSGT00940000153321.b.b.l.b.a.a.a.b ##37 ENSGT00940000153424.a.b ENSGT00390000001195.a ENSGT00940000156859 ENSGT00490000043385 ENSGT00950000183043.a.b.b.a.a.a.b ##18 ENSGT00950000183043.a.b.b.a.b.u.a.b ##18 ENSGT00940000164141 Northern American deer mouse MODERN SPECIES 18 Prxl2c (ENSPEMG00000020672) #23 Cdc14b (ENSPEMG00000020534) #24 ENSPEMG00000021224 #25 Zfp367 (ENSPEMG00000013770) #26 Slc35d2 (ENSPEMG00000021173) #27 Hsd17b3 (ENSPEMG00000021000) #28 ENSPEMG00000006631 #29 Ptch1 (ENSPEMG00000016117) #30 Fancc (ENSPEMG00000022299) #31 Aopep (ENSPEMG00000011169) #32 Fbp1 (ENSPEMG00000020415) #33 Fbp2 (ENSPEMG00000003200) #34 ENSPEMG00000020678 #36 ENSPEMG00000030384 #37 ENSPEMG00000027810 #37 Cts8 (ENSPEMG00000021957) ##37 Cts6 (ENSPEMG00000016021) ##37 Ctsr (ENSPEMG00000001393) ##37 ENSPEMG00000029752 ##37 ENSPEMG00000026728 ##37 Ctsj (ENSPEMG00000015113) ##37 ENSPEMG00000031098 ENSPEMG00000020375 ENSPEMG00000026470 ENSPEMG00000030527 ##37 ENSPEMG00000026019 ##37 ENSPEMG00000028441 ##37 ENSPEMG00000022155 ##37 4930486L24Rik (ENSPEMG00000016874) ##37 Ctsll3 (ENSPEMG00000029464) ##37 BC051665 (ENSPEMG00000025235) ##37 Prairie vole MODERN SPECIES 3 Ptch1 (ENSMOCG00000022943) #30 Fancc (ENSMOCG00000001776) #31 Aopep (ENSMOCG00000003056) #32 Fbp1 (ENSMOCG00000014907) #33 Fbp2 (ENSMOCG00000017815) #34 ENSMOCG00000010780 #36 Cts7 (ENSMOCG00000001845) #37 Cts8 (ENSMOCG00000005191) ##37 ENSMOCG00000020961 ##37 ENSMOCG00000013109 ##37 ENSMOCG00000000781 ##37 Ctsj (ENSMOCG00000013146) ##37 4930486L24Rik (ENSMOCG00000005874) ##37 ENSMOCG00000019948 ##37 ENSMOCG00000012620 ##37 Dapk1 (ENSMOCG00000016789) Gas1 (ENSMOCG00000002738) ENSMOCG00000022892 ENSMOCG00000007812 ENSMOCG00000000209 ENSMOCG00000000876 ##18 4921517D22Rik (ENSMOCG00000022999) ENSMOCG00000019507 Cricetinae ANCESTRAL SPECIES 20 ENSGT00940000153321.b.b.l.a #22 ENSGT00940000154367.a ENSGT00510000048363 #23 ENSGT00940000155950 #24 ENSGT00520000055591.b #25 ENSGT00670000098074 #26 ENSGT00940000160237 #27 ENSGT00940000160266 #28 ENSGT00940000161328 #29 ENSGT00940000159011 #30 ENSGT00390000016390 #31 ENSGT00940000155211 #32 ENSGT00390000015513.a.a.a #33 ENSGT00390000015513.a.a.b #34 ENSGT00940000153321.b.b.l.b.b.a.a.b #37 ENSGT00940000153321.b.b.l.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.b ##37 ENSGT00940000153321.b.b.l.b.b.b.a.b ##37 ENSGT00940000153321.b.b.l.b.b.b.b.a ##37 ENSGT00940000153321.b.b.l.b.b.b.b.b.b ##37 ENSGT00940000153321.b.b.l.b.a.b ##37 ENSGT00940000153321.b.b.l.b.a.a.a.a ##37 ENSGT00940000153321.b.b.l.b.a.a.a.b ##37 ENSGT00940000153424.a.b ENSGT00390000001195.a ENSGT00940000156859 ENSGT00490000043385 ENSGT00950000183043.a.b.b.a.a.a.b ##18 ENSGT00950000183043.a.b.b.a.b.u.b ##18 ENSGT00940000164141 ENSGT00530000063675.b Chinese hamster chok1gshd MODERN SPECIES 317 Ctsl (ENSCGRG00001023416) #22 Prxl2c (ENSCGRG00001003859) #23 ENSCGRG00001002667 Cdc14b (ENSCGRG00001019066) #24 Habp4 (ENSCGRG00001025040) #25 Zfp367 (ENSCGRG00001022531) #26 Slc35d2 (ENSCGRG00001020192) #27 Hsd17b3 (ENSCGRG00001009870) #28 ENSCGRG00001022738 #29 ENSCGRG00001008618 Ptch1 (ENSCGRG00001010176) #30 Fancc (ENSCGRG00001013491) #31 Aopep (ENSCGRG00001012713) #32 Fbp1 (ENSCGRG00001009150) #33 Fbp2 (ENSCGRG00001022515) #34 Cts8 (ENSCGRG00001013704) ##37 Cts6 (ENSCGRG00001022925) ##37 Ctsq (ENSCGRG00001002399) ##37 Ctsj (ENSCGRG00001024764) ##37 ENSCGRG00001015895 ##37 ENSCGRG00001024602 ##37 4930486L24Rik (ENSCGRG00001023066) ##37 ENSCGRG00001019274 ##37 ENSCGRG00001014152 ##37 BC051665 (ENSCGRG00001008665) ##37 Dapk1 (ENSCGRG00001000497) Gas1 (ENSCGRG00001010171) Tut7 (ENSCGRG00001020605) ENSCGRG00001007037 1700014D04Rik (ENSCGRG00001022165) ##18 Spata31d1d (ENSCGRG00001011836) ##18 Golden Hamster MODERN SPECIES 699 Cdk20 (ENSMAUG00000001239) #21 Ctsv (ENSMAUG00000000661) Prxl2c (ENSMAUG00000007262) #23 Cdc14b (ENSMAUG00000002176) #24 Habp4 (ENSMAUG00000020977) #25 Zfp367 (ENSMAUG00000019699) #26 Slc35d2 (ENSMAUG00000016504) #27 Hsd17b3 (ENSMAUG00000018759) #28 Ercc6l2 (ENSMAUG00000004820) #29 Ptch1 (ENSMAUG00000014816) #30 Fancc (ENSMAUG00000012407) #31 Aopep (ENSMAUG00000003279) #32 Fbp1 (ENSMAUG00000015819) #33 Fbp2 (ENSMAUG00000017596) #34 ENSMAUG00000016362 #37 Cts8 (ENSMAUG00000018878) ##37 Ctsr (ENSMAUG00000014961) ##37 Cts6 (ENSMAUG00000016662) ##37 Ctsj (ENSMAUG00000008852) ##37 Ctsll3 (ENSMAUG00000014374) ##37 BC051665 (ENSMAUG00000012142) ##37 Dapk1 (ENSMAUG00000000180) Gas1 (ENSMAUG00000019435) Tut7 (ENSMAUG00000006963) ENSMAUG00000000645 1700014D04Rik (ENSMAUG00000020029) ##18 ENSMAUG00000012538 Naa35 (ENSMAUG00000006704) ENSMAUG00000002599 Ntrk2 (ENSMAUG00000014898) Slc28a3 (ENSMAUG00000007466) Murinae ANCESTRAL SPECIES 21 ENSGT00940000154367.a ENSGT00510000048363 #23 ENSGT00940000155950 #24 ENSGT00520000055591.b #25 ENSGT00670000098074 #26 ENSGT00940000160237 #27 ENSGT00940000160266 #28 ENSGT00940000161328 #29 ENSGT00940000159011 #30 ENSGT00390000016390 #31 ENSGT00940000155211 #32 ENSGT00390000015513.a.a.a #33 ENSGT00390000015513.a.a.b #34 ENSGT00940000153321.b.b.l.b.b.a.b #36 ENSGT00940000153321.b.b.l.b.b.a.a.b.b #37 ENSGT00940000153321.b.b.l.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.b ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.b.e ##37 ENSGT00940000153321.b.b.l.b.b.b.b.a ##37 ENSGT00390000010930 ENSGT00940000153321.b.b.l.b.b.b.b.b ##37 ENSGT00940000153321.b.b.l.b.a.b ##37 ENSGT00940000153321.b.b.l.b.a.a.a.a ##37 ENSGT00940000153321.b.b.l.b.a.a.a.b ##37 ENSGT00940000153424.a.b ENSGT00390000001195.a ENSGT00940000156859 ENSGT00490000043385 ENSGT00950000183043.a.b.b.a.a.a.b ##18 ENSGT00950000183043.a.b.b.a.b.u.b ##18 Rat DUPLICATION Rat MODERN SPECIES 8 ENSRNOG00000068622 LOC102552000 (ENSRNOG00000068835) LOC102552000 (ENSRNOG00000070106) ENSRNOG00000065506 LOC102549249 (ENSRNOG00000063621) ENSRNOG00000064579 LOC102549249 (ENSRNOG00000067517) AABR07028805.1 (ENSRNOG00000040024) LOC102555902 (ENSRNOG00000068265) ENSRNOG00000063185 LOC108348224 (ENSRNOG00000062387) Ctsm (ENSRNOG00000065730) #36 RGD1564657 (ENSRNOG00000050474) ##37 Cts7 (ENSRNOG00000033540) #37 Cts8l1 (ENSRNOG00000065532) ##37 Cts8 (ENSRNOG00000040000) ##37 Ctsr (ENSRNOG00000017888) ##37 MGC114246 (ENSRNOG00000039990) ##37 AABR07043347.1 (ENSRNOG00000051410) Ctsq (ENSRNOG00000048693) ##37 LOC100364523 (ENSRNOG00000056519) ##37 Ctsql2 (ENSRNOG00000017946) ##37 Ctsj (ENSRNOG00000046476) ##37 RGD1564827 (ENSRNOG00000069712) #36 Tpbpa (ENSRNOG00000039975) Ctla2a (ENSRNOG00000039971) ##37 Testin (ENSRNOG00000018028) ##37 Ctsll3 (ENSRNOG00000069877) ##37 RGD1308751 (ENSRNOG00000039954) ##37 Dapk1 (ENSRNOG00000018198) Tut7 (ENSRNOG00000016629) Rat MODERN SPECIES 8 ENSRNOG00000063205 ENSRNOG00000068622 LOC102552000 (ENSRNOG00000068835) LOC102552000 (ENSRNOG00000070106) ENSRNOG00000065506 LOC102549249 (ENSRNOG00000063621) ENSRNOG00000064579 LOC102549249 (ENSRNOG00000067517) AABR07028805.1 (ENSRNOG00000040024) LOC102555902 (ENSRNOG00000068265) ENSRNOG00000063185 LOC108348224 (ENSRNOG00000062387) Ctsm (ENSRNOG00000065730) #36 RGD1564657 (ENSRNOG00000050474) ##37 Cts7 (ENSRNOG00000033540) #37 Cts8l1 (ENSRNOG00000065532) ##37 Cts8 (ENSRNOG00000040000) ##37 Ctsr (ENSRNOG00000017888) ##37 MGC114246 (ENSRNOG00000039990) ##37 AABR07043347.1 (ENSRNOG00000051410) Ctsq (ENSRNOG00000048693) ##37 LOC100364523 (ENSRNOG00000056519) ##37 Ctsql2 (ENSRNOG00000017946) ##37 Ctsj (ENSRNOG00000046476) ##37 RGD1564827 (ENSRNOG00000069712) #36 Tpbpa (ENSRNOG00000039975) Ctla2a (ENSRNOG00000039971) ##37 Testin (ENSRNOG00000018028) ##37 Ctsll3 (ENSRNOG00000069877) ##37 RGD1308751 (ENSRNOG00000039954) ##37 Dapk1 (ENSRNOG00000018198) Mus ANCESTRAL SPECIES 18 ENSGT00510000048363 #23 ENSGT00940000155950 #24 ENSGT00520000055591.b #25 ENSGT00670000098074 #26 ENSGT00940000160237 #27 ENSGT00940000160266 #28 ENSGT00940000161328 #29 ENSGT00940000159011 #30 ENSGT00390000016390 #31 ENSGT00940000155211 #32 ENSGT00390000015513.a.a.a #33 ENSGT00390000015513.a.a.b #34 ENSGT00940000153321.b.b.l.b.b.a.b.b #35 ENSGT00940000153321.b.b.l.b.b.a.b.a #36 ENSGT00940000153321.b.b.l.b.b.a.a.b.b #37 ENSGT00940000153321.b.b.l.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.b ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.b.e ##37 ENSGT00940000153321.b.b.l.b.b.b.b.a ##37 ENSGT00390000010930.a ENSGT00940000153321.b.b.l.b.b.b.b.b ##37 ENSGT00940000153321.b.b.l.b.a.b ##37 ENSGT00940000153321.b.b.l.b.a.a.a.a ##37 ENSGT00940000153321.b.b.l.b.a.a.a.b ##37 ENSGT00940000153424.a.b ENSGT00800000125290 ENSGT00390000001195.a ENSGT00940000156859 ENSGT00490000043385 ENSGT00950000183043.a.b.b.a.a.a.b ##18 Mus_A ANCESTRAL SPECIES 14 ENSGT00510000048363 #23 ENSGT00940000155950 #24 ENSGT00520000055591.b #25 ENSGT00670000098074 #26 ENSGT00940000160237 #27 ENSGT00940000160266 #28 ENSGT00940000161328 #29 ENSGT00940000159011 #30 ENSGT00390000016390 #31 ENSGT00940000155211 #32 ENSGT00390000015513.a.a.a #33 ENSGT00390000015513.a.a.b #34 ENSGT00940000153321.b.b.l.b.b.a.b.b #35 ENSGT00940000153321.b.b.l.b.b.a.b.a #36 ENSGT00940000153321.b.b.l.b.b.a.a.b.b #37 ENSGT00940000153321.b.b.l.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.b ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.b.e ##37 ENSGT00940000153321.b.b.l.b.b.b.b.a ##37 ENSGT00390000010930.a ENSGT00390000010930.b ENSGT00940000153321.b.b.l.b.b.b.b.b ##37 ENSGT00940000153321.b.b.l.b.a.b ##37 ENSGT00940000153321.b.b.l.b.a.a.a.a ##37 ENSGT00940000153321.b.b.l.b.a.a.a.b ##37 ENSGT00940000153424.a.b ENSGT00800000125290 ENSGT00390000001195.a ENSGT00940000156859 ENSGT00490000043385 Mus_B ANCESTRAL SPECIES 13 ENSGT00510000048363 #23 ENSGT00940000155950 #24 ENSGT00520000055591.b #25 ENSGT00670000098074 #26 ENSGT00940000160237 #27 ENSGT00940000160266 #28 ENSGT00940000161328 #29 ENSGT00940000159011 #30 ENSGT00390000016390 #31 ENSGT00940000155211 #32 ENSGT00390000015513.a.a.a #33 ENSGT00390000015513.a.a.b #34 ENSGT00940000153321.b.b.l.b.b.a.b.b #35 ENSGT00940000153321.b.b.l.b.b.a.b.a #36 ENSGT00940000153321.b.b.l.b.b.a.a.b.b #37 ENSGT00940000153321.b.b.l.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.b ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.b.e ##37 ENSGT00940000153321.b.b.l.b.b.b.b.a ##37 ENSGT00390000010930.a ENSGT00940000153321.b.b.l.b.b.b.b.b.d ##37 ENSGT00390000010930.b ENSGT00940000153321.b.b.l.b.b.b.b.b.c ##37 ENSGT00940000153321.b.b.l.b.a.b ##37 ENSGT00940000153321.b.b.l.b.a.a.a.a ##37 ENSGT00940000153321.b.b.l.b.a.a.a.b ##37 ENSGT00940000153424.a.b ENSGT00800000125290 ENSGT00390000001195.a ENSGT00940000156859 Mus_C ANCESTRAL SPECIES 10 ENSGT00510000048363 #23 ENSGT00940000155950 #24 ENSGT00520000055591.b #25 ENSGT00670000098074 #26 ENSGT00940000160237 #27 ENSGT00940000160266 #28 ENSGT00940000161328 #29 ENSGT00940000159011 #30 ENSGT00390000016390 #31 ENSGT00940000155211 #32 ENSGT00390000015513.a.a.a #33 ENSGT00390000015513.a.a.b #34 ENSGT00940000153321.b.b.l.b.b.a.b.b #35 ENSGT00940000153321.b.b.l.b.b.a.b.a #36 ENSGT00940000153321.b.b.l.b.b.a.a.b.b #37 ENSGT00940000153321.b.b.l.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.b ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.b.e ##37 ENSGT00940000153321.b.b.l.b.b.b.b.a ##37 ENSGT00390000010930.a ENSGT00940000153321.b.b.l.b.b.b.b.b.d ##37 ENSGT00390000010930.b ENSGT00940000153321.b.b.l.b.b.b.b.b.c ##37 ENSGT00940000153321.b.b.l.b.a.b ##37 ENSGT00940000153321.b.b.l.b.a.a.a.a ##37 ENSGT00940000153321.b.b.l.b.a.a.a.b ##37 ENSGT00940000153424.a.b ENSGT00800000125290 ENSGT00390000001195.a ENSGT00940000156859 spretus MODERN SPECIES 4 Prxl2c (MGP_SPRETEiJ_G0019521) #23 Cdc14b (MGP_SPRETEiJ_G0019520) #24 Habp4 (MGP_SPRETEiJ_G0019519) #25 Zfp367 (MGP_SPRETEiJ_G0019518) #26 Slc35d2 (MGP_SPRETEiJ_G0019517) #27 Hsd17b3 (MGP_SPRETEiJ_G0019516) #28 MGP_SPRETEiJ_G0019515 #29 Ptch1 (MGP_SPRETEiJ_G0019514) #30 Fancc (MGP_SPRETEiJ_G0019513) #31 Aopep (MGP_SPRETEiJ_G0019512) #32 Fbp1 (MGP_SPRETEiJ_G0019511) #33 Fbp2 (MGP_SPRETEiJ_G0019510) #34 MGP_SPRETEiJ_G0019509 #35 Ctsm (MGP_SPRETEiJ_G0019508) #36 Cts7 (MGP_SPRETEiJ_G0019507) #37 Cts8 (MGP_SPRETEiJ_G0019506) ##37 Cts6 (MGP_SPRETEiJ_G0019505) ##37 Ctsr (MGP_SPRETEiJ_G0019504) ##37 Ctsq (MGP_SPRETEiJ_G0019503) ##37 Ctsj (MGP_SPRETEiJ_G0019502) ##37 MGP_SPRETEiJ_G0019501 Ctla2a (MGP_SPRETEiJ_G0019500) ##37 Tpbpb (MGP_SPRETEiJ_G0019499) Ctla2b (MGP_SPRETEiJ_G0019498) ##37 4930486L24Rik (MGP_SPRETEiJ_G0019497) ##37 Ctsll3 (MGP_SPRETEiJ_G0019496) ##37 BC051665 (MGP_SPRETEiJ_G0019495) ##37 Dapk1 (MGP_SPRETEiJ_G0019494) MGP_SPRETEiJ_G0019493 Gas1 (MGP_SPRETEiJ_G0019492) Tut7 (MGP_SPRETEiJ_G0019491) Steppe mouse MODERN SPECIES 2052 Cts7 (ENSMSIG00000015541) #37 Cts8 (ENSMSIG00000015619) ##37 Cts6 (ENSMSIG00000015627) ##37 Ctsr (ENSMSIG00000015645) ##37 Mouse MODERN SPECIES 4 Aopep (ENSMUSG00000021458) #32 Fbp1 (ENSMUSG00000069805) #33 Fbp2 (ENSMUSG00000021456) #34 Gm5141 (ENSMUSG00000091183) Platr25 (ENSMUSG00000074863) 6720489N17Rik (ENSMUSG00000072066) Zfp934 (ENSMUSG00000074865) Gm49359 (ENSMUSG00000055228) Zfp935 (ENSMUSG00000113450) Gm3604 (ENSMUSG00000094942) Zfp808 (ENSMUSG00000074867) Cts3 (ENSMUSG00000074870) #35 Gm49352 (ENSMUSG00000114904) Ctsm (ENSMUSG00000074871) #36 Cts7 (ENSMUSG00000021440) #37 Cts8 (ENSMUSG00000057446) ##37 Cts6 (ENSMUSG00000021441) ##37 Ctsr (ENSMUSG00000055679) ##37 Ctsq (ENSMUSG00000021439) ##37 Ctsj (ENSMUSG00000055298) ##37 Tpbpa (ENSMUSG00000033834) Ctla2a (ENSMUSG00000044258) ##37 Tpbpb (ENSMUSG00000062705) Gm49391 (ENSMUSG00000114432) Ctla2b (ENSMUSG00000074874) ##37 4930486L24Rik (ENSMUSG00000050345) ##37 Ctsll3 (ENSMUSG00000056728) ##37 BC051665 (ENSMUSG00000042243) ##37 Dapk1 (ENSMUSG00000021559) Gas1 (ENSMUSG00000052957) Tut7 (ENSMUSG00000035248) Ryukyu mouse MODERN SPECIES 4 Prxl2c (MGP_CAROLIEiJ_G0018641) #23 Cdc14b (MGP_CAROLIEiJ_G0018640) #24 Habp4 (MGP_CAROLIEiJ_G0018639) #25 Zfp367 (MGP_CAROLIEiJ_G0018638) #26 Slc35d2 (MGP_CAROLIEiJ_G0018637) #27 Hsd17b3 (MGP_CAROLIEiJ_G0018636) #28 MGP_CAROLIEiJ_G0018635 #29 Ptch1 (MGP_CAROLIEiJ_G0018634) #30 Fancc (MGP_CAROLIEiJ_G0018633) #31 Aopep (MGP_CAROLIEiJ_G0018632) #32 Fbp1 (MGP_CAROLIEiJ_G0018631) #33 Fbp2 (MGP_CAROLIEiJ_G0018630) #34 MGP_CAROLIEiJ_G0018629 #35 Ctsm (MGP_CAROLIEiJ_G0018628) #36 Cts7 (MGP_CAROLIEiJ_G0018627) #37 Cts8 (MGP_CAROLIEiJ_G0018626) ##37 Cts6 (MGP_CAROLIEiJ_G0018625) ##37 Ctsr (MGP_CAROLIEiJ_G0018624) ##37 Ctsj (MGP_CAROLIEiJ_G0018623) ##37 MGP_CAROLIEiJ_G0018622 Tpbpb (MGP_CAROLIEiJ_G0018621) MGP_CAROLIEiJ_G0018620 ##37 MGP_CAROLIEiJ_G0018619 ##37 4930486L24Rik (MGP_CAROLIEiJ_G0018618) ##37 Ctsll3 (MGP_CAROLIEiJ_G0018617) ##37 BC051665 (MGP_CAROLIEiJ_G0018616) ##37 Dapk1 (MGP_CAROLIEiJ_G0018615) MGP_CAROLIEiJ_G0018614 Gas1 (MGP_CAROLIEiJ_G0018613) Tut7 (MGP_CAROLIEiJ_G0018612) MGP_CAROLIEiJ_G0018611 Shrew mouse MODERN SPECIES 7 Prxl2c (MGP_PahariEiJ_G0019705) #23 Cdc14b (MGP_PahariEiJ_G0019704) #24 Habp4 (MGP_PahariEiJ_G0019703) #25 Zfp367 (MGP_PahariEiJ_G0019702) #26 Slc35d2 (MGP_PahariEiJ_G0019701) #27 Hsd17b3 (MGP_PahariEiJ_G0019700) #28 MGP_PahariEiJ_G0019699 #29 Ptch1 (MGP_PahariEiJ_G0019698) #30 Fancc (MGP_PahariEiJ_G0019697) #31 Aopep (MGP_PahariEiJ_G0019696) #32 Fbp1 (MGP_PahariEiJ_G0019695) #33 Fbp2 (MGP_PahariEiJ_G0019694) #34 MGP_PahariEiJ_G0019693 #35 MGP_PahariEiJ_G0019692 #36 Cts7 (MGP_PahariEiJ_G0019691) #37 Cts8 (MGP_PahariEiJ_G0019690) ##37 Cts6 (MGP_PahariEiJ_G0019689) ##37 Ctsr (MGP_PahariEiJ_G0019688) ##37 Ctsj (MGP_PahariEiJ_G0019687) ##37 MGP_PahariEiJ_G0019686 MGP_PahariEiJ_G0019685 MGP_PahariEiJ_G0019684 ##37 MGP_PahariEiJ_G0019683 ##37 4930486L24Rik (MGP_PahariEiJ_G0019682) ##37 Ctsll3 (MGP_PahariEiJ_G0019681) ##37 BC051665 (MGP_PahariEiJ_G0019680) ##37 Dapk1 (MGP_PahariEiJ_G0019679) MGP_PahariEiJ_G0019678 Gas1 (MGP_PahariEiJ_G0019677) Tut7 (MGP_PahariEiJ_G0019676) MGP_PahariEiJ_G0019675 Muroidea_A ANCESTRAL SPECIES 14 ENSGT00940000153321.b.b.l.a #22 ENSGT00940000154367.a ENSGT00510000048363 #23 ENSGT00940000155950 #24 ENSGT00520000055591.b #25 ENSGT00670000098074 #26 ENSGT00940000160237 #27 ENSGT00940000160266 #28 ENSGT00940000161328 #29 ENSGT00940000159011 #30 ENSGT00390000016390 #31 ENSGT00940000155211 #32 ENSGT00390000015513.a.a.a #33 ENSGT00390000015513.a.a.b #34 ENSGT00940000153321.b.b.l.b.b.a.b #36 ENSGT00940000153321.b.b.l.b.b.a.a.b #37 ENSGT00940000153321.b.b.l.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.b ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.b ##37 ENSGT00940000153321.b.b.l.b.b.b.b.a ##37 ENSGT00940000153321.b.b.l.b.b.b.b.b ##37 ENSGT00940000153321.b.b.l.b.a.b ##37 ENSGT00940000153321.b.b.l.b.a.a.a.a ##37 ENSGT00940000153321.b.b.l.b.a.a.a.b ##37 ENSGT00940000153424.a.b ENSGT00390000001195.a ENSGT00940000156859 ENSGT00490000043385 ENSGT00950000183043.a.b.b.a.a.a.b ##18 ENSGT00950000183043.a.b.b.a.b.u.b ##18 Murinae DUPLICATION Murinae ANCESTRAL SPECIES ENSGT00940000153321.b.b.l.b.b.a.a.b.a ##37 Rat MODERN SPECIES 8 Fbp2 (ENSRNOG00000017637) #34 ENSRNOG00000065205 ENSRNOG00000063205 ENSRNOG00000068622 LOC102552000 (ENSRNOG00000068835) LOC102552000 (ENSRNOG00000070106) ENSRNOG00000065506 LOC102549249 (ENSRNOG00000063621) ENSRNOG00000064579 LOC102549249 (ENSRNOG00000067517) AABR07028805.1 (ENSRNOG00000040024) LOC102555902 (ENSRNOG00000068265) ENSRNOG00000063185 LOC108348224 (ENSRNOG00000062387) Ctsm (ENSRNOG00000065730) #36 RGD1564657 (ENSRNOG00000050474) ##37 Cts7 (ENSRNOG00000033540) #37 Cts8l1 (ENSRNOG00000065532) ##37 Cts8 (ENSRNOG00000040000) ##37 Ctsr (ENSRNOG00000017888) ##37 MGC114246 (ENSRNOG00000039990) ##37 AABR07043347.1 (ENSRNOG00000051410) Ctsq (ENSRNOG00000048693) ##37 LOC100364523 (ENSRNOG00000056519) ##37 Ctsql2 (ENSRNOG00000017946) ##37 Ctsj (ENSRNOG00000046476) ##37 RGD1564827 (ENSRNOG00000069712) #36 Tpbpa (ENSRNOG00000039975) Ctla2a (ENSRNOG00000039971) ##37 Testin (ENSRNOG00000018028) ##37 Ctsll3 (ENSRNOG00000069877) ##37 Mus ANCESTRAL SPECIES ENSGT00940000153321.b.b.l.b.b.a.a.b.a ##37 Mus_A ANCESTRAL SPECIES ENSGT00940000153321.b.b.l.b.b.a.a.b.a ##37 Mus_B ANCESTRAL SPECIES ENSGT00940000153321.b.b.l.b.b.a.a.b.a ##37 Mus_C ANCESTRAL SPECIES ENSGT00940000153321.b.b.l.b.b.a.a.b.a ##37 Steppe mouse MODERN SPECIES 1423 ENSMSIG00000013394 #36 ENSMSIG00000013445 ##37 Murinae ANCESTRAL SPECIES 21 ENSGT00940000153321.b.b.l.a #22 ENSGT00940000154367.a ENSGT00510000048363 #23 ENSGT00940000155950 #24 ENSGT00520000055591.b #25 ENSGT00670000098074 #26 ENSGT00940000160237 #27 ENSGT00940000160266 #28 ENSGT00940000161328 #29 ENSGT00940000159011 #30 ENSGT00390000016390 #31 ENSGT00940000155211 #32 ENSGT00390000015513.a.a.a #33 ENSGT00390000015513.a.a.b #34 ENSGT00940000153321.b.b.l.b.b.a.b #36 ENSGT00940000153321.b.b.l.b.b.a.a.b.b #37 ENSGT00940000153321.b.b.l.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.b ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.b.e ##37 ENSGT00940000153321.b.b.l.b.b.b.b.a ##37 ENSGT00390000010930 ENSGT00940000153321.b.b.l.b.b.b.b.b ##37 ENSGT00940000153321.b.b.l.b.a.b ##37 ENSGT00940000153321.b.b.l.b.a.a.a.a ##37 ENSGT00940000153321.b.b.l.b.a.a.a.b ##37 ENSGT00940000153424.a.b ENSGT00390000001195.a ENSGT00940000156859 ENSGT00490000043385 ENSGT00950000183043.a.b.b.a.a.a.b ##18 Mus ANCESTRAL SPECIES 18 ENSGT00940000154367.a ENSGT00510000048363 #23 ENSGT00940000155950 #24 ENSGT00520000055591.b #25 ENSGT00670000098074 #26 ENSGT00940000160237 #27 ENSGT00940000160266 #28 ENSGT00940000161328 #29 ENSGT00940000159011 #30 ENSGT00390000016390 #31 ENSGT00940000155211 #32 ENSGT00390000015513.a.a.a #33 ENSGT00390000015513.a.a.b #34 ENSGT00940000153321.b.b.l.b.b.a.b.b #35 ENSGT00940000153321.b.b.l.b.b.a.b.a #36 ENSGT00940000153321.b.b.l.b.b.a.a.b.b #37 ENSGT00940000153321.b.b.l.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.b ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.b.e ##37 ENSGT00940000153321.b.b.l.b.b.b.b.a ##37 ENSGT00390000010930.a ENSGT00940000153321.b.b.l.b.b.b.b.b ##37 ENSGT00940000153321.b.b.l.b.a.b ##37 ENSGT00940000153321.b.b.l.b.a.a.a.a ##37 ENSGT00940000153321.b.b.l.b.a.a.a.b ##37 ENSGT00940000153424.a.b ENSGT00800000125290 ENSGT00390000001195.a ENSGT00940000156859 ENSGT00490000043385 Mus_A ANCESTRAL SPECIES 14 ENSGT00940000153321.b.b.l.a #22 ENSGT00510000048363 #23 ENSGT00940000155950 #24 ENSGT00520000055591.b #25 ENSGT00670000098074 #26 ENSGT00940000160237 #27 ENSGT00940000160266 #28 ENSGT00940000161328 #29 ENSGT00940000159011 #30 ENSGT00390000016390 #31 ENSGT00940000155211 #32 ENSGT00390000015513.a.a.a #33 ENSGT00390000015513.a.a.b #34 ENSGT00940000153321.b.b.l.b.b.a.b.b #35 ENSGT00940000153321.b.b.l.b.b.a.b.a #36 ENSGT00940000153321.b.b.l.b.b.a.a.b.b #37 ENSGT00940000153321.b.b.l.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.b ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.b.e ##37 ENSGT00940000153321.b.b.l.b.b.b.b.a ##37 ENSGT00390000010930.a ENSGT00390000010930.b ENSGT00940000153321.b.b.l.b.b.b.b.b ##37 ENSGT00940000153321.b.b.l.b.a.b ##37 ENSGT00940000153321.b.b.l.b.a.a.a.a ##37 ENSGT00940000153321.b.b.l.b.a.a.a.b ##37 ENSGT00940000153424.a.b ENSGT00800000125290 ENSGT00390000001195.a ENSGT00940000156859 Mus_B ANCESTRAL SPECIES 13 ENSGT00940000153321.b.b.l.a #22 ENSGT00510000048363 #23 ENSGT00940000155950 #24 ENSGT00520000055591.b #25 ENSGT00670000098074 #26 ENSGT00940000160237 #27 ENSGT00940000160266 #28 ENSGT00940000161328 #29 ENSGT00940000159011 #30 ENSGT00390000016390 #31 ENSGT00940000155211 #32 ENSGT00390000015513.a.a.a #33 ENSGT00390000015513.a.a.b #34 ENSGT00940000153321.b.b.l.b.b.a.b.b #35 ENSGT00940000153321.b.b.l.b.b.a.b.a #36 ENSGT00940000153321.b.b.l.b.b.a.a.b.b #37 ENSGT00940000153321.b.b.l.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.b ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.b.e ##37 ENSGT00940000153321.b.b.l.b.b.b.b.a ##37 ENSGT00390000010930.a ENSGT00940000153321.b.b.l.b.b.b.b.b.d ##37 ENSGT00390000010930.b ENSGT00940000153321.b.b.l.b.b.b.b.b.c ##37 ENSGT00940000153321.b.b.l.b.a.b ##37 ENSGT00940000153321.b.b.l.b.a.a.a.a ##37 ENSGT00940000153321.b.b.l.b.a.a.a.b ##37 ENSGT00940000153424.a.b ENSGT00800000125290 ENSGT00390000001195.a Mouse MODERN SPECIES 4 Fancc (ENSMUSG00000021461) #31 Aopep (ENSMUSG00000021458) #32 Fbp1 (ENSMUSG00000069805) #33 Fbp2 (ENSMUSG00000021456) #34 Gm5141 (ENSMUSG00000091183) Platr25 (ENSMUSG00000074863) 6720489N17Rik (ENSMUSG00000072066) Zfp934 (ENSMUSG00000074865) Gm49359 (ENSMUSG00000055228) Zfp935 (ENSMUSG00000113450) Gm3604 (ENSMUSG00000094942) Zfp808 (ENSMUSG00000074867) Cts3 (ENSMUSG00000074870) #35 Gm49352 (ENSMUSG00000114904) Ctsm (ENSMUSG00000074871) #36 Cts7 (ENSMUSG00000021440) #37 Cts8 (ENSMUSG00000057446) ##37 Cts6 (ENSMUSG00000021441) ##37 Ctsr (ENSMUSG00000055679) ##37 Ctsq (ENSMUSG00000021439) ##37 Ctsj (ENSMUSG00000055298) ##37 Tpbpa (ENSMUSG00000033834) Ctla2a (ENSMUSG00000044258) ##37 Tpbpb (ENSMUSG00000062705) Gm49391 (ENSMUSG00000114432) Ctla2b (ENSMUSG00000074874) ##37 4930486L24Rik (ENSMUSG00000050345) ##37 Ctsll3 (ENSMUSG00000056728) ##37 BC051665 (ENSMUSG00000042243) ##37 Dapk1 (ENSMUSG00000021559) Gas1 (ENSMUSG00000052957) Mus_C ANCESTRAL SPECIES 10 ENSGT00940000153321.b.b.l.a #22 ENSGT00510000048363 #23 ENSGT00940000155950 #24 ENSGT00520000055591.b #25 ENSGT00670000098074 #26 ENSGT00940000160237 #27 ENSGT00940000160266 #28 ENSGT00940000161328 #29 ENSGT00940000159011 #30 ENSGT00390000016390 #31 ENSGT00940000155211 #32 ENSGT00390000015513.a.a.a #33 ENSGT00390000015513.a.a.b #34 ENSGT00940000153321.b.b.l.b.b.a.b.b #35 ENSGT00940000153321.b.b.l.b.b.a.b.a #36 ENSGT00940000153321.b.b.l.b.b.a.a.b.b #37 ENSGT00940000153321.b.b.l.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.b ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.b.e ##37 ENSGT00940000153321.b.b.l.b.b.b.b.a ##37 ENSGT00390000010930.a ENSGT00940000153321.b.b.l.b.b.b.b.b.d ##37 ENSGT00390000010930.b ENSGT00940000153321.b.b.l.b.b.b.b.b.c ##37 ENSGT00940000153321.b.b.l.b.a.b ##37 ENSGT00940000153321.b.b.l.b.a.a.a.a ##37 ENSGT00940000153321.b.b.l.b.a.a.a.b ##37 ENSGT00940000153424.a.b ENSGT00800000125290 ENSGT00390000001195.a Steppe mouse MODERN SPECIES 2052 Cts7 (ENSMSIG00000015541) #37 Cts8 (ENSMSIG00000015619) ##37 Cts6 (ENSMSIG00000015627) ##37 Ctsr (ENSMSIG00000015645) ##37 spretus MODERN SPECIES 4 Ctsl (MGP_SPRETEiJ_G0019522) #22 Prxl2c (MGP_SPRETEiJ_G0019521) #23 Cdc14b (MGP_SPRETEiJ_G0019520) #24 Habp4 (MGP_SPRETEiJ_G0019519) #25 Zfp367 (MGP_SPRETEiJ_G0019518) #26 Slc35d2 (MGP_SPRETEiJ_G0019517) #27 Hsd17b3 (MGP_SPRETEiJ_G0019516) #28 MGP_SPRETEiJ_G0019515 #29 Ptch1 (MGP_SPRETEiJ_G0019514) #30 Fancc (MGP_SPRETEiJ_G0019513) #31 Aopep (MGP_SPRETEiJ_G0019512) #32 Fbp1 (MGP_SPRETEiJ_G0019511) #33 Fbp2 (MGP_SPRETEiJ_G0019510) #34 MGP_SPRETEiJ_G0019509 #35 Ctsm (MGP_SPRETEiJ_G0019508) #36 Cts7 (MGP_SPRETEiJ_G0019507) #37 Cts8 (MGP_SPRETEiJ_G0019506) ##37 Cts6 (MGP_SPRETEiJ_G0019505) ##37 Ctsr (MGP_SPRETEiJ_G0019504) ##37 Ctsq (MGP_SPRETEiJ_G0019503) ##37 Ctsj (MGP_SPRETEiJ_G0019502) ##37 MGP_SPRETEiJ_G0019501 Ctla2a (MGP_SPRETEiJ_G0019500) ##37 Tpbpb (MGP_SPRETEiJ_G0019499) Ctla2b (MGP_SPRETEiJ_G0019498) ##37 4930486L24Rik (MGP_SPRETEiJ_G0019497) ##37 Ctsll3 (MGP_SPRETEiJ_G0019496) ##37 BC051665 (MGP_SPRETEiJ_G0019495) ##37 Dapk1 (MGP_SPRETEiJ_G0019494) MGP_SPRETEiJ_G0019493 Gas1 (MGP_SPRETEiJ_G0019492) Ryukyu mouse MODERN SPECIES 4 Ctsl (MGP_CAROLIEiJ_G0018642) #22 Prxl2c (MGP_CAROLIEiJ_G0018641) #23 Cdc14b (MGP_CAROLIEiJ_G0018640) #24 Habp4 (MGP_CAROLIEiJ_G0018639) #25 Zfp367 (MGP_CAROLIEiJ_G0018638) #26 Slc35d2 (MGP_CAROLIEiJ_G0018637) #27 Hsd17b3 (MGP_CAROLIEiJ_G0018636) #28 MGP_CAROLIEiJ_G0018635 #29 Ptch1 (MGP_CAROLIEiJ_G0018634) #30 Fancc (MGP_CAROLIEiJ_G0018633) #31 Aopep (MGP_CAROLIEiJ_G0018632) #32 Fbp1 (MGP_CAROLIEiJ_G0018631) #33 Fbp2 (MGP_CAROLIEiJ_G0018630) #34 MGP_CAROLIEiJ_G0018629 #35 Ctsm (MGP_CAROLIEiJ_G0018628) #36 Cts7 (MGP_CAROLIEiJ_G0018627) #37 Cts8 (MGP_CAROLIEiJ_G0018626) ##37 Cts6 (MGP_CAROLIEiJ_G0018625) ##37 Ctsr (MGP_CAROLIEiJ_G0018624) ##37 Ctsj (MGP_CAROLIEiJ_G0018623) ##37 MGP_CAROLIEiJ_G0018622 Tpbpb (MGP_CAROLIEiJ_G0018621) MGP_CAROLIEiJ_G0018620 ##37 MGP_CAROLIEiJ_G0018619 ##37 4930486L24Rik (MGP_CAROLIEiJ_G0018618) ##37 Ctsll3 (MGP_CAROLIEiJ_G0018617) ##37 BC051665 (MGP_CAROLIEiJ_G0018616) ##37 Dapk1 (MGP_CAROLIEiJ_G0018615) MGP_CAROLIEiJ_G0018614 Gas1 (MGP_CAROLIEiJ_G0018613) Tut7 (MGP_CAROLIEiJ_G0018612) Shrew mouse MODERN SPECIES 7 MGP_PahariEiJ_G0019706 Prxl2c (MGP_PahariEiJ_G0019705) #23 Cdc14b (MGP_PahariEiJ_G0019704) #24 Habp4 (MGP_PahariEiJ_G0019703) #25 Zfp367 (MGP_PahariEiJ_G0019702) #26 Slc35d2 (MGP_PahariEiJ_G0019701) #27 Hsd17b3 (MGP_PahariEiJ_G0019700) #28 MGP_PahariEiJ_G0019699 #29 Ptch1 (MGP_PahariEiJ_G0019698) #30 Fancc (MGP_PahariEiJ_G0019697) #31 Aopep (MGP_PahariEiJ_G0019696) #32 Fbp1 (MGP_PahariEiJ_G0019695) #33 Fbp2 (MGP_PahariEiJ_G0019694) #34 MGP_PahariEiJ_G0019693 #35 MGP_PahariEiJ_G0019692 #36 Cts7 (MGP_PahariEiJ_G0019691) #37 Cts8 (MGP_PahariEiJ_G0019690) ##37 Cts6 (MGP_PahariEiJ_G0019689) ##37 Ctsr (MGP_PahariEiJ_G0019688) ##37 Ctsj (MGP_PahariEiJ_G0019687) ##37 MGP_PahariEiJ_G0019686 MGP_PahariEiJ_G0019685 MGP_PahariEiJ_G0019684 ##37 MGP_PahariEiJ_G0019683 ##37 4930486L24Rik (MGP_PahariEiJ_G0019682) ##37 Ctsll3 (MGP_PahariEiJ_G0019681) ##37 BC051665 (MGP_PahariEiJ_G0019680) ##37 Dapk1 (MGP_PahariEiJ_G0019679) MGP_PahariEiJ_G0019678 Gas1 (MGP_PahariEiJ_G0019677) Tut7 (MGP_PahariEiJ_G0019676) Rat MODERN SPECIES 8 ENSRNOG00000065205 ENSRNOG00000063205 ENSRNOG00000068622 LOC102552000 (ENSRNOG00000068835) LOC102552000 (ENSRNOG00000070106) ENSRNOG00000065506 LOC102549249 (ENSRNOG00000063621) ENSRNOG00000064579 LOC102549249 (ENSRNOG00000067517) AABR07028805.1 (ENSRNOG00000040024) LOC102555902 (ENSRNOG00000068265) ENSRNOG00000063185 LOC108348224 (ENSRNOG00000062387) Ctsm (ENSRNOG00000065730) #36 RGD1564657 (ENSRNOG00000050474) ##37 Cts7 (ENSRNOG00000033540) #37 Cts8l1 (ENSRNOG00000065532) ##37 Cts8 (ENSRNOG00000040000) ##37 Ctsr (ENSRNOG00000017888) ##37 MGC114246 (ENSRNOG00000039990) ##37 AABR07043347.1 (ENSRNOG00000051410) Ctsq (ENSRNOG00000048693) ##37 LOC100364523 (ENSRNOG00000056519) ##37 Ctsql2 (ENSRNOG00000017946) ##37 Ctsj (ENSRNOG00000046476) ##37 RGD1564827 (ENSRNOG00000069712) #36 Tpbpa (ENSRNOG00000039975) Ctla2a (ENSRNOG00000039971) ##37 Testin (ENSRNOG00000018028) ##37 Ctsll3 (ENSRNOG00000069877) ##37 RGD1308751 (ENSRNOG00000039954) ##37 Cricetidae ANCESTRAL SPECIES 22 ENSGT00940000153321.b.b.l.a #22 ENSGT00940000154367.a ENSGT00510000048363 #23 ENSGT00940000155950 #24 ENSGT00520000055591.b #25 ENSGT00670000098074 #26 ENSGT00940000160237 #27 ENSGT00940000160266 #28 ENSGT00940000161328 #29 ENSGT00940000159011 #30 ENSGT00390000016390 #31 ENSGT00940000155211 #32 ENSGT00390000015513.a.a.a #33 ENSGT00390000015513.a.a.b #34 ENSGT00940000153321.b.b.l.b.b.a.b #36 ENSGT00940000153321.b.b.l.b.b.a.a.b #37 ENSGT00940000153321.b.b.l.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.b ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.b ##37 ENSGT00940000153321.b.b.l.b.b.b.b.a ##37 ENSGT00940000153321.b.b.l.b.b.b.b.b.b ##37 ENSGT00940000153321.b.b.l.b.a.b ##37 ENSGT00940000153321.b.b.l.b.a.a.a.a ##37 ENSGT00940000153321.b.b.l.b.a.a.a.b ##37 ENSGT00940000153424.a.b ENSGT00390000001195.a ENSGT00940000156859 ENSGT00490000043385 ENSGT00950000183043.a.b.b.a.a.a.b ##18 ENSGT00950000183043.a.b.b.a.b.u.b ##18 Cricetinae ANCESTRAL SPECIES 20 ENSGT00940000159128 #21 ENSGT00940000153321.b.b.l.a #22 ENSGT00940000154367.a ENSGT00510000048363 #23 ENSGT00940000155950 #24 ENSGT00520000055591.b #25 ENSGT00670000098074 #26 ENSGT00940000160237 #27 ENSGT00940000160266 #28 ENSGT00940000161328 #29 ENSGT00940000159011 #30 ENSGT00390000016390 #31 ENSGT00940000155211 #32 ENSGT00390000015513.a.a.a #33 ENSGT00390000015513.a.a.b #34 ENSGT00940000153321.b.b.l.b.b.a.a.b #37 ENSGT00940000153321.b.b.l.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.b ##37 ENSGT00940000153321.b.b.l.b.b.b.a.b ##37 ENSGT00940000153321.b.b.l.b.b.b.b.a ##37 ENSGT00940000153321.b.b.l.b.b.b.b.b.b ##37 ENSGT00940000153321.b.b.l.b.a.b ##37 ENSGT00940000153321.b.b.l.b.a.a.a.a ##37 ENSGT00940000153321.b.b.l.b.a.a.a.b ##37 ENSGT00940000153424.a.b ENSGT00390000001195.a ENSGT00940000156859 ENSGT00490000043385 ENSGT00950000183043.a.b.b.a.a.a.b ##18 ENSGT00950000183043.a.b.b.a.b.u.b ##18 ENSGT00940000164141 Golden Hamster MODERN SPECIES 699 Fam240b (ENSMAUG00000003441) #20 Cdk20 (ENSMAUG00000001239) #21 Ctsv (ENSMAUG00000000661) Prxl2c (ENSMAUG00000007262) #23 Cdc14b (ENSMAUG00000002176) #24 Habp4 (ENSMAUG00000020977) #25 Zfp367 (ENSMAUG00000019699) #26 Slc35d2 (ENSMAUG00000016504) #27 Hsd17b3 (ENSMAUG00000018759) #28 Ercc6l2 (ENSMAUG00000004820) #29 Ptch1 (ENSMAUG00000014816) #30 Fancc (ENSMAUG00000012407) #31 Aopep (ENSMAUG00000003279) #32 Fbp1 (ENSMAUG00000015819) #33 Fbp2 (ENSMAUG00000017596) #34 ENSMAUG00000016362 #37 Cts8 (ENSMAUG00000018878) ##37 Ctsr (ENSMAUG00000014961) ##37 Cts6 (ENSMAUG00000016662) ##37 Ctsj (ENSMAUG00000008852) ##37 Ctsll3 (ENSMAUG00000014374) ##37 BC051665 (ENSMAUG00000012142) ##37 Dapk1 (ENSMAUG00000000180) Gas1 (ENSMAUG00000019435) Tut7 (ENSMAUG00000006963) ENSMAUG00000000645 1700014D04Rik (ENSMAUG00000020029) ##18 ENSMAUG00000012538 Naa35 (ENSMAUG00000006704) ENSMAUG00000002599 Ntrk2 (ENSMAUG00000014898) Cricetidae_B ANCESTRAL SPECIES 22 ENSGT00940000153321.b.b.l.a #22 ENSGT00940000154367.a ENSGT00510000048363 #23 ENSGT00940000155950 #24 ENSGT00520000055591.b #25 ENSGT00670000098074 #26 ENSGT00940000160237 #27 ENSGT00940000160266 #28 ENSGT00940000161328 #29 ENSGT00940000159011 #30 ENSGT00390000016390 #31 ENSGT00940000155211 #32 ENSGT00390000015513.a.a.a #33 ENSGT00390000015513.a.a.b #34 ENSGT00940000153321.b.b.l.b.b.a.b #36 ENSGT00940000153321.b.b.l.b.b.a.a.b #37 ENSGT00940000153321.b.b.l.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.b ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.b ##37 ENSGT00940000153321.b.b.l.b.b.b.b.a ##37 ENSGT00940000153321.b.b.l.b.b.b.b.b.a ##37 ENSGT00940000153321.b.b.l.b.a.b ##37 ENSGT00940000153321.b.b.l.b.a.a.a.a ##37 ENSGT00940000153321.b.b.l.b.a.a.a.b ##37 ENSGT00940000153424.a.b ENSGT00390000001195.a ENSGT00940000156859 ENSGT00490000043385 ENSGT00950000183043.a.b.b.a.a.a.b ##18 ENSGT00950000183043.a.b.b.a.b.u.a.b ##18 Northern American deer mouse DUPLICATION Northern American deer mouse MODERN SPECIES 18 Ctsl (ENSPEMG00000021285) #22 ENSPEMG00000021037 Prxl2c (ENSPEMG00000020672) #23 Cdc14b (ENSPEMG00000020534) #24 ENSPEMG00000021224 #25 Zfp367 (ENSPEMG00000013770) #26 Slc35d2 (ENSPEMG00000021173) #27 Hsd17b3 (ENSPEMG00000021000) #28 ENSPEMG00000006631 #29 Ptch1 (ENSPEMG00000016117) #30 Fancc (ENSPEMG00000022299) #31 Aopep (ENSPEMG00000011169) #32 Fbp1 (ENSPEMG00000020415) #33 Fbp2 (ENSPEMG00000003200) #34 ENSPEMG00000020678 #36 ENSPEMG00000030384 #37 ENSPEMG00000027810 #37 Cts8 (ENSPEMG00000021957) ##37 Cts6 (ENSPEMG00000016021) ##37 Ctsr (ENSPEMG00000001393) ##37 ENSPEMG00000029752 ##37 ENSPEMG00000026728 ##37 Ctsj (ENSPEMG00000015113) ##37 ENSPEMG00000031098 ENSPEMG00000020375 ENSPEMG00000026470 ENSPEMG00000030527 ##37 ENSPEMG00000026019 ##37 ENSPEMG00000028441 ##37 ENSPEMG00000022155 ##37 4930486L24Rik (ENSPEMG00000016874) ##37 Northern American deer mouse MODERN SPECIES 18 ENSPEMG00000021037 Prxl2c (ENSPEMG00000020672) #23 Cdc14b (ENSPEMG00000020534) #24 ENSPEMG00000021224 #25 Zfp367 (ENSPEMG00000013770) #26 Slc35d2 (ENSPEMG00000021173) #27 Hsd17b3 (ENSPEMG00000021000) #28 ENSPEMG00000006631 #29 Ptch1 (ENSPEMG00000016117) #30 Fancc (ENSPEMG00000022299) #31 Aopep (ENSPEMG00000011169) #32 Fbp1 (ENSPEMG00000020415) #33 Fbp2 (ENSPEMG00000003200) #34 ENSPEMG00000020678 #36 ENSPEMG00000030384 #37 ENSPEMG00000027810 #37 Cts8 (ENSPEMG00000021957) ##37 Cts6 (ENSPEMG00000016021) ##37 Ctsr (ENSPEMG00000001393) ##37 ENSPEMG00000029752 ##37 ENSPEMG00000026728 ##37 Ctsj (ENSPEMG00000015113) ##37 ENSPEMG00000031098 ENSPEMG00000020375 ENSPEMG00000026470 ENSPEMG00000030527 ##37 ENSPEMG00000026019 ##37 ENSPEMG00000028441 ##37 ENSPEMG00000022155 ##37 4930486L24Rik (ENSPEMG00000016874) ##37 Ctsll3 (ENSPEMG00000029464) ##37 Prairie vole MODERN SPECIES 3 Ptch1 (ENSMOCG00000022943) #30 Fancc (ENSMOCG00000001776) #31 Aopep (ENSMOCG00000003056) #32 Fbp1 (ENSMOCG00000014907) #33 Fbp2 (ENSMOCG00000017815) #34 ENSMOCG00000010780 #36 Cts7 (ENSMOCG00000001845) #37 Cts8 (ENSMOCG00000005191) ##37 ENSMOCG00000020961 ##37 ENSMOCG00000013109 ##37 ENSMOCG00000000781 ##37 Ctsj (ENSMOCG00000013146) ##37 4930486L24Rik (ENSMOCG00000005874) ##37 ENSMOCG00000019948 ##37 ENSMOCG00000012620 ##37 Dapk1 (ENSMOCG00000016789) Gas1 (ENSMOCG00000002738) ENSMOCG00000022892 ENSMOCG00000007812 ENSMOCG00000000209 ENSMOCG00000000876 ##18 4921517D22Rik (ENSMOCG00000022999) Muroidea_A ANCESTRAL SPECIES 14 ENSGT00940000159128 #21 ENSGT00940000153321.b.b.l.a #22 ENSGT00940000154367.a ENSGT00510000048363 #23 ENSGT00940000155950 #24 ENSGT00520000055591.b #25 ENSGT00670000098074 #26 ENSGT00940000160237 #27 ENSGT00940000160266 #28 ENSGT00940000161328 #29 ENSGT00940000159011 #30 ENSGT00390000016390 #31 ENSGT00940000155211 #32 ENSGT00390000015513.a.a.a #33 ENSGT00390000015513.a.a.b #34 ENSGT00940000153321.b.b.l.b.b.a.b #36 ENSGT00940000153321.b.b.l.b.b.a.a.b #37 ENSGT00940000153321.b.b.l.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.b ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.b ##37 ENSGT00940000153321.b.b.l.b.b.b.b.a ##37 ENSGT00940000153321.b.b.l.b.b.b.b.b ##37 ENSGT00940000153321.b.b.l.b.a.b ##37 ENSGT00940000153321.b.b.l.b.a.a.a.a ##37 ENSGT00940000153321.b.b.l.b.a.a.a.b ##37 ENSGT00940000153424.a.b ENSGT00390000001195.a ENSGT00940000156859 ENSGT00490000043385 ENSGT00950000183043.a.b.b.a.a.a.b ##18 Cricetidae ANCESTRAL SPECIES 22 ENSGT00940000159128 #21 ENSGT00940000153321.b.b.l.a #22 ENSGT00940000154367.a ENSGT00510000048363 #23 ENSGT00940000155950 #24 ENSGT00520000055591.b #25 ENSGT00670000098074 #26 ENSGT00940000160237 #27 ENSGT00940000160266 #28 ENSGT00940000161328 #29 ENSGT00940000159011 #30 ENSGT00390000016390 #31 ENSGT00940000155211 #32 ENSGT00390000015513.a.a.a #33 ENSGT00390000015513.a.a.b #34 ENSGT00940000153321.b.b.l.b.b.a.b #36 ENSGT00940000153321.b.b.l.b.b.a.a.b #37 ENSGT00940000153321.b.b.l.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.b ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.b ##37 ENSGT00940000153321.b.b.l.b.b.b.b.a ##37 ENSGT00940000153321.b.b.l.b.b.b.b.b.b ##37 ENSGT00940000153321.b.b.l.b.a.b ##37 ENSGT00940000153321.b.b.l.b.a.a.a.a ##37 ENSGT00940000153321.b.b.l.b.a.a.a.b ##37 ENSGT00940000153424.a.b ENSGT00390000001195.a ENSGT00940000156859 ENSGT00490000043385 ENSGT00950000183043.a.b.b.a.a.a.b ##18 Cricetidae_B ANCESTRAL SPECIES 22 ENSGT00940000159128 #21 ENSGT00940000153321.b.b.l.a #22 ENSGT00940000154367.a ENSGT00510000048363 #23 ENSGT00940000155950 #24 ENSGT00520000055591.b #25 ENSGT00670000098074 #26 ENSGT00940000160237 #27 ENSGT00940000160266 #28 ENSGT00940000161328 #29 ENSGT00940000159011 #30 ENSGT00390000016390 #31 ENSGT00940000155211 #32 ENSGT00390000015513.a.a.a #33 ENSGT00390000015513.a.a.b #34 ENSGT00940000153321.b.b.l.b.b.a.b #36 ENSGT00940000153321.b.b.l.b.b.a.a.b #37 ENSGT00940000153321.b.b.l.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.b ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.b ##37 ENSGT00940000153321.b.b.l.b.b.b.b.a ##37 ENSGT00940000153321.b.b.l.b.b.b.b.b.a ##37 ENSGT00940000153321.b.b.l.b.a.b ##37 ENSGT00940000153321.b.b.l.b.a.a.a.a ##37 ENSGT00940000153321.b.b.l.b.a.a.a.b ##37 ENSGT00940000153424.a.b ENSGT00390000001195.a ENSGT00940000156859 ENSGT00490000043385 ENSGT00950000183043.a.b.b.a.a.a.b ##18 Prairie vole MODERN SPECIES 3 Ptch1 (ENSMOCG00000022943) #30 Fancc (ENSMOCG00000001776) #31 Aopep (ENSMOCG00000003056) #32 Fbp1 (ENSMOCG00000014907) #33 Fbp2 (ENSMOCG00000017815) #34 ENSMOCG00000010780 #36 Cts7 (ENSMOCG00000001845) #37 Cts8 (ENSMOCG00000005191) ##37 ENSMOCG00000020961 ##37 ENSMOCG00000013109 ##37 ENSMOCG00000000781 ##37 Ctsj (ENSMOCG00000013146) ##37 4930486L24Rik (ENSMOCG00000005874) ##37 ENSMOCG00000019948 ##37 ENSMOCG00000012620 ##37 Dapk1 (ENSMOCG00000016789) Gas1 (ENSMOCG00000002738) ENSMOCG00000022892 ENSMOCG00000007812 ENSMOCG00000000209 ENSMOCG00000000876 ##18 Northern American deer mouse MODERN SPECIES 18 Cdk20 (ENSPEMG00000023165) #21 Ctsl (ENSPEMG00000021285) #22 ENSPEMG00000021037 Prxl2c (ENSPEMG00000020672) #23 Cdc14b (ENSPEMG00000020534) #24 ENSPEMG00000021224 #25 Zfp367 (ENSPEMG00000013770) #26 Slc35d2 (ENSPEMG00000021173) #27 Hsd17b3 (ENSPEMG00000021000) #28 ENSPEMG00000006631 #29 Ptch1 (ENSPEMG00000016117) #30 Fancc (ENSPEMG00000022299) #31 Aopep (ENSPEMG00000011169) #32 Fbp1 (ENSPEMG00000020415) #33 Fbp2 (ENSPEMG00000003200) #34 ENSPEMG00000020678 #36 ENSPEMG00000030384 #37 ENSPEMG00000027810 #37 Cts8 (ENSPEMG00000021957) ##37 Cts6 (ENSPEMG00000016021) ##37 Ctsr (ENSPEMG00000001393) ##37 ENSPEMG00000029752 ##37 ENSPEMG00000026728 ##37 Ctsj (ENSPEMG00000015113) ##37 ENSPEMG00000031098 ENSPEMG00000020375 ENSPEMG00000026470 ENSPEMG00000030527 ##37 ENSPEMG00000026019 ##37 ENSPEMG00000028441 ##37 ENSPEMG00000022155 ##37 Murinae ANCESTRAL SPECIES 21 ENSGT00940000159128 #21 ENSGT00940000153321.b.b.l.a #22 ENSGT00940000154367.a ENSGT00510000048363 #23 ENSGT00940000155950 #24 ENSGT00520000055591.b #25 ENSGT00670000098074 #26 ENSGT00940000160237 #27 ENSGT00940000160266 #28 ENSGT00940000161328 #29 ENSGT00940000159011 #30 ENSGT00390000016390 #31 ENSGT00940000155211 #32 ENSGT00390000015513.a.a.a #33 ENSGT00390000015513.a.a.b #34 ENSGT00940000153321.b.b.l.b.b.a.b #36 ENSGT00940000153321.b.b.l.b.b.a.a.b.b #37 ENSGT00940000153321.b.b.l.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.b ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.b.e ##37 ENSGT00940000153321.b.b.l.b.b.b.b.a ##37 ENSGT00390000010930 ENSGT00940000153321.b.b.l.b.b.b.b.b ##37 ENSGT00940000153321.b.b.l.b.a.b ##37 ENSGT00940000153321.b.b.l.b.a.a.a.a ##37 ENSGT00940000153321.b.b.l.b.a.a.a.b ##37 ENSGT00940000153424.a.b ENSGT00390000001195.a ENSGT00940000156859 ENSGT00490000043385 Mus DUPLICATION Mus ANCESTRAL SPECIES 18 ENSGT00940000153321.b.b.l.a #22 ENSGT00940000154367.a ENSGT00510000048363 #23 ENSGT00940000155950 #24 ENSGT00520000055591.b #25 ENSGT00670000098074 #26 ENSGT00940000160237 #27 ENSGT00940000160266 #28 ENSGT00940000161328 #29 ENSGT00940000159011 #30 ENSGT00390000016390 #31 ENSGT00940000155211 #32 ENSGT00390000015513.a.a.a #33 ENSGT00390000015513.a.a.b #34 ENSGT00940000153321.b.b.l.b.b.a.b.b #35 ENSGT00940000153321.b.b.l.b.b.a.b.a #36 ENSGT00940000153321.b.b.l.b.b.a.a.b.b #37 ENSGT00940000153321.b.b.l.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.b ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.b.e ##37 ENSGT00940000153321.b.b.l.b.b.b.b.a ##37 ENSGT00390000010930.a ENSGT00940000153321.b.b.l.b.b.b.b.b ##37 ENSGT00940000153321.b.b.l.b.a.b ##37 ENSGT00940000153321.b.b.l.b.a.a.a.a ##37 ENSGT00940000153321.b.b.l.b.a.a.a.b ##37 ENSGT00940000153424.a.b ENSGT00800000125290 ENSGT00390000001195.a ENSGT00940000156859 Mus_A ANCESTRAL SPECIES 14 ENSGT00940000159128 #21 ENSGT00940000153321.b.b.l.a #22 ENSGT00510000048363 #23 ENSGT00940000155950 #24 ENSGT00520000055591.b #25 ENSGT00670000098074 #26 ENSGT00940000160237 #27 ENSGT00940000160266 #28 ENSGT00940000161328 #29 ENSGT00940000159011 #30 ENSGT00390000016390 #31 ENSGT00940000155211 #32 ENSGT00390000015513.a.a.a #33 ENSGT00390000015513.a.a.b #34 ENSGT00940000153321.b.b.l.b.b.a.b.b #35 ENSGT00940000153321.b.b.l.b.b.a.b.a #36 ENSGT00940000153321.b.b.l.b.b.a.a.b.b #37 ENSGT00940000153321.b.b.l.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.b ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.b.e ##37 ENSGT00940000153321.b.b.l.b.b.b.b.a ##37 ENSGT00390000010930.a ENSGT00390000010930.b ENSGT00940000153321.b.b.l.b.b.b.b.b ##37 ENSGT00940000153321.b.b.l.b.a.b ##37 ENSGT00940000153321.b.b.l.b.a.a.a.a ##37 ENSGT00940000153321.b.b.l.b.a.a.a.b ##37 ENSGT00940000153424.a.b ENSGT00800000125290 ENSGT00390000001195.a Ryukyu mouse MODERN SPECIES 4 Cdk20 (MGP_CAROLIEiJ_G0018643) #21 Ctsl (MGP_CAROLIEiJ_G0018642) #22 Prxl2c (MGP_CAROLIEiJ_G0018641) #23 Cdc14b (MGP_CAROLIEiJ_G0018640) #24 Habp4 (MGP_CAROLIEiJ_G0018639) #25 Zfp367 (MGP_CAROLIEiJ_G0018638) #26 Slc35d2 (MGP_CAROLIEiJ_G0018637) #27 Hsd17b3 (MGP_CAROLIEiJ_G0018636) #28 MGP_CAROLIEiJ_G0018635 #29 Ptch1 (MGP_CAROLIEiJ_G0018634) #30 Fancc (MGP_CAROLIEiJ_G0018633) #31 Aopep (MGP_CAROLIEiJ_G0018632) #32 Fbp1 (MGP_CAROLIEiJ_G0018631) #33 Fbp2 (MGP_CAROLIEiJ_G0018630) #34 MGP_CAROLIEiJ_G0018629 #35 Ctsm (MGP_CAROLIEiJ_G0018628) #36 Cts7 (MGP_CAROLIEiJ_G0018627) #37 Cts8 (MGP_CAROLIEiJ_G0018626) ##37 Cts6 (MGP_CAROLIEiJ_G0018625) ##37 Ctsr (MGP_CAROLIEiJ_G0018624) ##37 Ctsj (MGP_CAROLIEiJ_G0018623) ##37 MGP_CAROLIEiJ_G0018622 Tpbpb (MGP_CAROLIEiJ_G0018621) MGP_CAROLIEiJ_G0018620 ##37 MGP_CAROLIEiJ_G0018619 ##37 4930486L24Rik (MGP_CAROLIEiJ_G0018618) ##37 Ctsll3 (MGP_CAROLIEiJ_G0018617) ##37 BC051665 (MGP_CAROLIEiJ_G0018616) ##37 Dapk1 (MGP_CAROLIEiJ_G0018615) MGP_CAROLIEiJ_G0018614 Gas1 (MGP_CAROLIEiJ_G0018613) Mus_B ANCESTRAL SPECIES 13 ENSGT00940000159128 #21 ENSGT00940000153321.b.b.l.a #22 ENSGT00510000048363 #23 ENSGT00940000155950 #24 ENSGT00520000055591.b #25 ENSGT00670000098074 #26 ENSGT00940000160237 #27 ENSGT00940000160266 #28 ENSGT00940000161328 #29 ENSGT00940000159011 #30 ENSGT00390000016390 #31 ENSGT00940000155211 #32 ENSGT00390000015513.a.a.a #33 ENSGT00390000015513.a.a.b #34 ENSGT00940000153321.b.b.l.b.b.a.b.b #35 ENSGT00940000153321.b.b.l.b.b.a.b.a #36 ENSGT00940000153321.b.b.l.b.b.a.a.b.b #37 ENSGT00940000153321.b.b.l.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.b ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.b.e ##37 ENSGT00940000153321.b.b.l.b.b.b.b.a ##37 ENSGT00390000010930.a ENSGT00940000153321.b.b.l.b.b.b.b.b.d ##37 ENSGT00390000010930.b ENSGT00940000153321.b.b.l.b.b.b.b.b.c ##37 ENSGT00940000153321.b.b.l.b.a.b ##37 ENSGT00940000153321.b.b.l.b.a.a.a.a ##37 ENSGT00940000153321.b.b.l.b.a.a.a.b ##37 ENSGT00940000153424.a.b ENSGT00800000125290 Mouse MODERN SPECIES 4 Ptch1 (ENSMUSG00000021466) #30 Fancc (ENSMUSG00000021461) #31 Aopep (ENSMUSG00000021458) #32 Fbp1 (ENSMUSG00000069805) #33 Fbp2 (ENSMUSG00000021456) #34 Gm5141 (ENSMUSG00000091183) Platr25 (ENSMUSG00000074863) 6720489N17Rik (ENSMUSG00000072066) Zfp934 (ENSMUSG00000074865) Gm49359 (ENSMUSG00000055228) Zfp935 (ENSMUSG00000113450) Gm3604 (ENSMUSG00000094942) Zfp808 (ENSMUSG00000074867) Cts3 (ENSMUSG00000074870) #35 Gm49352 (ENSMUSG00000114904) Ctsm (ENSMUSG00000074871) #36 Cts7 (ENSMUSG00000021440) #37 Cts8 (ENSMUSG00000057446) ##37 Cts6 (ENSMUSG00000021441) ##37 Ctsr (ENSMUSG00000055679) ##37 Ctsq (ENSMUSG00000021439) ##37 Ctsj (ENSMUSG00000055298) ##37 Tpbpa (ENSMUSG00000033834) Ctla2a (ENSMUSG00000044258) ##37 Tpbpb (ENSMUSG00000062705) Gm49391 (ENSMUSG00000114432) Ctla2b (ENSMUSG00000074874) ##37 4930486L24Rik (ENSMUSG00000050345) ##37 Ctsll3 (ENSMUSG00000056728) ##37 BC051665 (ENSMUSG00000042243) ##37 Dapk1 (ENSMUSG00000021559) Mus_C ANCESTRAL SPECIES 10 ENSGT00940000159128 #21 ENSGT00940000153321.b.b.l.a #22 ENSGT00510000048363 #23 ENSGT00940000155950 #24 ENSGT00520000055591.b #25 ENSGT00670000098074 #26 ENSGT00940000160237 #27 ENSGT00940000160266 #28 ENSGT00940000161328 #29 ENSGT00940000159011 #30 ENSGT00390000016390 #31 ENSGT00940000155211 #32 ENSGT00390000015513.a.a.a #33 ENSGT00390000015513.a.a.b #34 ENSGT00940000153321.b.b.l.b.b.a.b.b #35 ENSGT00940000153321.b.b.l.b.b.a.b.a #36 ENSGT00940000153321.b.b.l.b.b.a.a.b.b #37 ENSGT00940000153321.b.b.l.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.b ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.b.e ##37 ENSGT00940000153321.b.b.l.b.b.b.b.a ##37 ENSGT00390000010930.a ENSGT00940000153321.b.b.l.b.b.b.b.b.d ##37 ENSGT00390000010930.b ENSGT00940000153321.b.b.l.b.b.b.b.b.c ##37 ENSGT00940000153321.b.b.l.b.a.b ##37 ENSGT00940000153321.b.b.l.b.a.a.a.a ##37 ENSGT00940000153321.b.b.l.b.a.a.a.b ##37 ENSGT00940000153424.a.b ENSGT00800000125290 spretus MODERN SPECIES 4 Cdk20 (MGP_SPRETEiJ_G0019523) #21 Ctsl (MGP_SPRETEiJ_G0019522) #22 Prxl2c (MGP_SPRETEiJ_G0019521) #23 Cdc14b (MGP_SPRETEiJ_G0019520) #24 Habp4 (MGP_SPRETEiJ_G0019519) #25 Zfp367 (MGP_SPRETEiJ_G0019518) #26 Slc35d2 (MGP_SPRETEiJ_G0019517) #27 Hsd17b3 (MGP_SPRETEiJ_G0019516) #28 MGP_SPRETEiJ_G0019515 #29 Ptch1 (MGP_SPRETEiJ_G0019514) #30 Fancc (MGP_SPRETEiJ_G0019513) #31 Aopep (MGP_SPRETEiJ_G0019512) #32 Fbp1 (MGP_SPRETEiJ_G0019511) #33 Fbp2 (MGP_SPRETEiJ_G0019510) #34 MGP_SPRETEiJ_G0019509 #35 Ctsm (MGP_SPRETEiJ_G0019508) #36 Cts7 (MGP_SPRETEiJ_G0019507) #37 Cts8 (MGP_SPRETEiJ_G0019506) ##37 Cts6 (MGP_SPRETEiJ_G0019505) ##37 Ctsr (MGP_SPRETEiJ_G0019504) ##37 Ctsq (MGP_SPRETEiJ_G0019503) ##37 Ctsj (MGP_SPRETEiJ_G0019502) ##37 MGP_SPRETEiJ_G0019501 Ctla2a (MGP_SPRETEiJ_G0019500) ##37 Tpbpb (MGP_SPRETEiJ_G0019499) Ctla2b (MGP_SPRETEiJ_G0019498) ##37 4930486L24Rik (MGP_SPRETEiJ_G0019497) ##37 Ctsll3 (MGP_SPRETEiJ_G0019496) ##37 BC051665 (MGP_SPRETEiJ_G0019495) ##37 Dapk1 (MGP_SPRETEiJ_G0019494) MGP_SPRETEiJ_G0019493 Steppe mouse MODERN SPECIES 1423 ENSMSIG00000013394 #36 ENSMSIG00000013445 ##37 Shrew mouse MODERN SPECIES 7 Cdk20 (MGP_PahariEiJ_G0019707) #21 MGP_PahariEiJ_G0019706 Prxl2c (MGP_PahariEiJ_G0019705) #23 Cdc14b (MGP_PahariEiJ_G0019704) #24 Habp4 (MGP_PahariEiJ_G0019703) #25 Zfp367 (MGP_PahariEiJ_G0019702) #26 Slc35d2 (MGP_PahariEiJ_G0019701) #27 Hsd17b3 (MGP_PahariEiJ_G0019700) #28 MGP_PahariEiJ_G0019699 #29 Ptch1 (MGP_PahariEiJ_G0019698) #30 Fancc (MGP_PahariEiJ_G0019697) #31 Aopep (MGP_PahariEiJ_G0019696) #32 Fbp1 (MGP_PahariEiJ_G0019695) #33 Fbp2 (MGP_PahariEiJ_G0019694) #34 MGP_PahariEiJ_G0019693 #35 MGP_PahariEiJ_G0019692 #36 Cts7 (MGP_PahariEiJ_G0019691) #37 Cts8 (MGP_PahariEiJ_G0019690) ##37 Cts6 (MGP_PahariEiJ_G0019689) ##37 Ctsr (MGP_PahariEiJ_G0019688) ##37 Ctsj (MGP_PahariEiJ_G0019687) ##37 MGP_PahariEiJ_G0019686 MGP_PahariEiJ_G0019685 MGP_PahariEiJ_G0019684 ##37 MGP_PahariEiJ_G0019683 ##37 4930486L24Rik (MGP_PahariEiJ_G0019682) ##37 Ctsll3 (MGP_PahariEiJ_G0019681) ##37 BC051665 (MGP_PahariEiJ_G0019680) ##37 Dapk1 (MGP_PahariEiJ_G0019679) MGP_PahariEiJ_G0019678 Gas1 (MGP_PahariEiJ_G0019677) Mus ANCESTRAL SPECIES 18 ENSGT00940000159128 #21 ENSGT00940000153321.b.b.l.a #22 ENSGT00940000154367.a ENSGT00510000048363 #23 ENSGT00940000155950 #24 ENSGT00520000055591.b #25 ENSGT00670000098074 #26 ENSGT00940000160237 #27 ENSGT00940000160266 #28 ENSGT00940000161328 #29 ENSGT00940000159011 #30 ENSGT00390000016390 #31 ENSGT00940000155211 #32 ENSGT00390000015513.a.a.a #33 ENSGT00390000015513.a.a.b #34 ENSGT00940000153321.b.b.l.b.b.a.b.b #35 ENSGT00940000153321.b.b.l.b.b.a.b.a #36 ENSGT00940000153321.b.b.l.b.b.a.a.b.b #37 ENSGT00940000153321.b.b.l.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.b ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.b.e ##37 ENSGT00940000153321.b.b.l.b.b.b.b.a ##37 ENSGT00390000010930.a ENSGT00940000153321.b.b.l.b.b.b.b.b ##37 ENSGT00940000153321.b.b.l.b.a.b ##37 ENSGT00940000153321.b.b.l.b.a.a.a.a ##37 ENSGT00940000153321.b.b.l.b.a.a.a.b ##37 ENSGT00940000153424.a.b ENSGT00800000125290 ENSGT00390000001195.a Mus_A ANCESTRAL SPECIES 14 ENSGT00530000069333.a #20 ENSGT00940000159128 #21 ENSGT00940000153321.b.b.l.a #22 ENSGT00510000048363 #23 ENSGT00940000155950 #24 ENSGT00520000055591.b #25 ENSGT00670000098074 #26 ENSGT00940000160237 #27 ENSGT00940000160266 #28 ENSGT00940000161328 #29 ENSGT00940000159011 #30 ENSGT00390000016390 #31 ENSGT00940000155211 #32 ENSGT00390000015513.a.a.a #33 ENSGT00390000015513.a.a.b #34 ENSGT00940000153321.b.b.l.b.b.a.b.b #35 ENSGT00940000153321.b.b.l.b.b.a.b.a #36 ENSGT00940000153321.b.b.l.b.b.a.a.b.b #37 ENSGT00940000153321.b.b.l.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.b ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.b.e ##37 ENSGT00940000153321.b.b.l.b.b.b.b.a ##37 ENSGT00390000010930.a ENSGT00390000010930.b ENSGT00940000153321.b.b.l.b.b.b.b.b ##37 ENSGT00940000153321.b.b.l.b.a.b ##37 ENSGT00940000153321.b.b.l.b.a.a.a.a ##37 ENSGT00940000153321.b.b.l.b.a.a.a.b ##37 ENSGT00940000153424.a.b ENSGT00800000125290 Mus_B ANCESTRAL SPECIES 13 ENSGT00530000069333.a #20 ENSGT00940000159128 #21 ENSGT00940000153321.b.b.l.a #22 ENSGT00510000048363 #23 ENSGT00940000155950 #24 ENSGT00520000055591.b #25 ENSGT00670000098074 #26 ENSGT00940000160237 #27 ENSGT00940000160266 #28 ENSGT00940000161328 #29 ENSGT00940000159011 #30 ENSGT00390000016390 #31 ENSGT00940000155211 #32 ENSGT00390000015513.a.a.a #33 ENSGT00390000015513.a.a.b #34 ENSGT00940000153321.b.b.l.b.b.a.b.b #35 ENSGT00940000153321.b.b.l.b.b.a.b.a #36 ENSGT00940000153321.b.b.l.b.b.a.a.b.b #37 ENSGT00940000153321.b.b.l.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.b ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.b.e ##37 ENSGT00940000153321.b.b.l.b.b.b.b.a ##37 ENSGT00390000010930.a ENSGT00940000153321.b.b.l.b.b.b.b.b.d ##37 ENSGT00390000010930.b ENSGT00940000153321.b.b.l.b.b.b.b.b.c ##37 ENSGT00940000153321.b.b.l.b.a.b ##37 ENSGT00940000153321.b.b.l.b.a.a.a.a ##37 ENSGT00940000153321.b.b.l.b.a.a.a.b ##37 ENSGT00940000153424.a.b Mouse MODERN SPECIES 4 Hsd17b3 (ENSMUSG00000033122) #28 Ercc6l2 (ENSMUSG00000021470) #29 Ptch1 (ENSMUSG00000021466) #30 Fancc (ENSMUSG00000021461) #31 Aopep (ENSMUSG00000021458) #32 Fbp1 (ENSMUSG00000069805) #33 Fbp2 (ENSMUSG00000021456) #34 Gm5141 (ENSMUSG00000091183) Platr25 (ENSMUSG00000074863) 6720489N17Rik (ENSMUSG00000072066) Zfp934 (ENSMUSG00000074865) Gm49359 (ENSMUSG00000055228) Zfp935 (ENSMUSG00000113450) Gm3604 (ENSMUSG00000094942) Zfp808 (ENSMUSG00000074867) Cts3 (ENSMUSG00000074870) #35 Gm49352 (ENSMUSG00000114904) Ctsm (ENSMUSG00000074871) #36 Cts7 (ENSMUSG00000021440) #37 Cts8 (ENSMUSG00000057446) ##37 Cts6 (ENSMUSG00000021441) ##37 Ctsr (ENSMUSG00000055679) ##37 Ctsq (ENSMUSG00000021439) ##37 Ctsj (ENSMUSG00000055298) ##37 Tpbpa (ENSMUSG00000033834) Ctla2a (ENSMUSG00000044258) ##37 Tpbpb (ENSMUSG00000062705) Gm49391 (ENSMUSG00000114432) Ctla2b (ENSMUSG00000074874) ##37 4930486L24Rik (ENSMUSG00000050345) ##37 Ctsll3 (ENSMUSG00000056728) ##37 Mus_C ANCESTRAL SPECIES 10 ENSGT00530000069333.a #20 ENSGT00940000159128 #21 ENSGT00940000153321.b.b.l.a #22 ENSGT00510000048363 #23 ENSGT00940000155950 #24 ENSGT00520000055591.b #25 ENSGT00670000098074 #26 ENSGT00940000160237 #27 ENSGT00940000160266 #28 ENSGT00940000161328 #29 ENSGT00940000159011 #30 ENSGT00390000016390 #31 ENSGT00940000155211 #32 ENSGT00390000015513.a.a.a #33 ENSGT00390000015513.a.a.b #34 ENSGT00940000153321.b.b.l.b.b.a.b.b #35 ENSGT00940000153321.b.b.l.b.b.a.b.a #36 ENSGT00940000153321.b.b.l.b.b.a.a.b.b #37 ENSGT00940000153321.b.b.l.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.b ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.b.e ##37 ENSGT00940000153321.b.b.l.b.b.b.b.a ##37 ENSGT00390000010930.a ENSGT00940000153321.b.b.l.b.b.b.b.b.d ##37 ENSGT00390000010930.b ENSGT00940000153321.b.b.l.b.b.b.b.b.c ##37 ENSGT00940000153321.b.b.l.b.a.b ##37 ENSGT00940000153321.b.b.l.b.a.a.a.a ##37 ENSGT00940000153321.b.b.l.b.a.a.a.b ##37 ENSGT00940000153424.a.b Steppe mouse MODERN SPECIES 2096 ENSMSIG00000022180 ENSMSIG00000022191 Cts3 (ENSMSIG00000022207) #35 ENSMSIG00000022241 spretus MODERN SPECIES 4 Fam240b (MGP_SPRETEiJ_G0019524) #20 Cdk20 (MGP_SPRETEiJ_G0019523) #21 Ctsl (MGP_SPRETEiJ_G0019522) #22 Prxl2c (MGP_SPRETEiJ_G0019521) #23 Cdc14b (MGP_SPRETEiJ_G0019520) #24 Habp4 (MGP_SPRETEiJ_G0019519) #25 Zfp367 (MGP_SPRETEiJ_G0019518) #26 Slc35d2 (MGP_SPRETEiJ_G0019517) #27 Hsd17b3 (MGP_SPRETEiJ_G0019516) #28 MGP_SPRETEiJ_G0019515 #29 Ptch1 (MGP_SPRETEiJ_G0019514) #30 Fancc (MGP_SPRETEiJ_G0019513) #31 Aopep (MGP_SPRETEiJ_G0019512) #32 Fbp1 (MGP_SPRETEiJ_G0019511) #33 Fbp2 (MGP_SPRETEiJ_G0019510) #34 MGP_SPRETEiJ_G0019509 #35 Ctsm (MGP_SPRETEiJ_G0019508) #36 Cts7 (MGP_SPRETEiJ_G0019507) #37 Cts8 (MGP_SPRETEiJ_G0019506) ##37 Cts6 (MGP_SPRETEiJ_G0019505) ##37 Ctsr (MGP_SPRETEiJ_G0019504) ##37 Ctsq (MGP_SPRETEiJ_G0019503) ##37 Ctsj (MGP_SPRETEiJ_G0019502) ##37 MGP_SPRETEiJ_G0019501 Ctla2a (MGP_SPRETEiJ_G0019500) ##37 Tpbpb (MGP_SPRETEiJ_G0019499) Ctla2b (MGP_SPRETEiJ_G0019498) ##37 4930486L24Rik (MGP_SPRETEiJ_G0019497) ##37 Ctsll3 (MGP_SPRETEiJ_G0019496) ##37 BC051665 (MGP_SPRETEiJ_G0019495) ##37 Dapk1 (MGP_SPRETEiJ_G0019494) Ryukyu mouse MODERN SPECIES 4 Fam240b (MGP_CAROLIEiJ_G0018644) #20 Cdk20 (MGP_CAROLIEiJ_G0018643) #21 Ctsl (MGP_CAROLIEiJ_G0018642) #22 Prxl2c (MGP_CAROLIEiJ_G0018641) #23 Cdc14b (MGP_CAROLIEiJ_G0018640) #24 Habp4 (MGP_CAROLIEiJ_G0018639) #25 Zfp367 (MGP_CAROLIEiJ_G0018638) #26 Slc35d2 (MGP_CAROLIEiJ_G0018637) #27 Hsd17b3 (MGP_CAROLIEiJ_G0018636) #28 MGP_CAROLIEiJ_G0018635 #29 Ptch1 (MGP_CAROLIEiJ_G0018634) #30 Fancc (MGP_CAROLIEiJ_G0018633) #31 Aopep (MGP_CAROLIEiJ_G0018632) #32 Fbp1 (MGP_CAROLIEiJ_G0018631) #33 Fbp2 (MGP_CAROLIEiJ_G0018630) #34 MGP_CAROLIEiJ_G0018629 #35 Ctsm (MGP_CAROLIEiJ_G0018628) #36 Cts7 (MGP_CAROLIEiJ_G0018627) #37 Cts8 (MGP_CAROLIEiJ_G0018626) ##37 Cts6 (MGP_CAROLIEiJ_G0018625) ##37 Ctsr (MGP_CAROLIEiJ_G0018624) ##37 Ctsj (MGP_CAROLIEiJ_G0018623) ##37 MGP_CAROLIEiJ_G0018622 Tpbpb (MGP_CAROLIEiJ_G0018621) MGP_CAROLIEiJ_G0018620 ##37 MGP_CAROLIEiJ_G0018619 ##37 4930486L24Rik (MGP_CAROLIEiJ_G0018618) ##37 Ctsll3 (MGP_CAROLIEiJ_G0018617) ##37 BC051665 (MGP_CAROLIEiJ_G0018616) ##37 Dapk1 (MGP_CAROLIEiJ_G0018615) MGP_CAROLIEiJ_G0018614 Shrew mouse MODERN SPECIES 7 Fam240b (MGP_PahariEiJ_G0019708) #20 Cdk20 (MGP_PahariEiJ_G0019707) #21 MGP_PahariEiJ_G0019706 Prxl2c (MGP_PahariEiJ_G0019705) #23 Cdc14b (MGP_PahariEiJ_G0019704) #24 Habp4 (MGP_PahariEiJ_G0019703) #25 Zfp367 (MGP_PahariEiJ_G0019702) #26 Slc35d2 (MGP_PahariEiJ_G0019701) #27 Hsd17b3 (MGP_PahariEiJ_G0019700) #28 MGP_PahariEiJ_G0019699 #29 Ptch1 (MGP_PahariEiJ_G0019698) #30 Fancc (MGP_PahariEiJ_G0019697) #31 Aopep (MGP_PahariEiJ_G0019696) #32 Fbp1 (MGP_PahariEiJ_G0019695) #33 Fbp2 (MGP_PahariEiJ_G0019694) #34 MGP_PahariEiJ_G0019693 #35 MGP_PahariEiJ_G0019692 #36 Cts7 (MGP_PahariEiJ_G0019691) #37 Cts8 (MGP_PahariEiJ_G0019690) ##37 Cts6 (MGP_PahariEiJ_G0019689) ##37 Ctsr (MGP_PahariEiJ_G0019688) ##37 Ctsj (MGP_PahariEiJ_G0019687) ##37 MGP_PahariEiJ_G0019686 MGP_PahariEiJ_G0019685 MGP_PahariEiJ_G0019684 ##37 MGP_PahariEiJ_G0019683 ##37 4930486L24Rik (MGP_PahariEiJ_G0019682) ##37 Ctsll3 (MGP_PahariEiJ_G0019681) ##37 BC051665 (MGP_PahariEiJ_G0019680) ##37 Dapk1 (MGP_PahariEiJ_G0019679) MGP_PahariEiJ_G0019678 Rat DUPLICATION Rat MODERN SPECIES 8 Fbp1 (ENSRNOG00000017597) #33 Fbp2 (ENSRNOG00000017637) #34 ENSRNOG00000065205 ENSRNOG00000063205 ENSRNOG00000068622 LOC102552000 (ENSRNOG00000068835) LOC102552000 (ENSRNOG00000070106) ENSRNOG00000065506 LOC102549249 (ENSRNOG00000063621) ENSRNOG00000064579 LOC102549249 (ENSRNOG00000067517) AABR07028805.1 (ENSRNOG00000040024) LOC102555902 (ENSRNOG00000068265) ENSRNOG00000063185 LOC108348224 (ENSRNOG00000062387) Ctsm (ENSRNOG00000065730) #36 RGD1564657 (ENSRNOG00000050474) ##37 Cts7 (ENSRNOG00000033540) #37 Cts8l1 (ENSRNOG00000065532) ##37 Cts8 (ENSRNOG00000040000) ##37 Ctsr (ENSRNOG00000017888) ##37 MGC114246 (ENSRNOG00000039990) ##37 AABR07043347.1 (ENSRNOG00000051410) Ctsq (ENSRNOG00000048693) ##37 LOC100364523 (ENSRNOG00000056519) ##37 Ctsql2 (ENSRNOG00000017946) ##37 Ctsj (ENSRNOG00000046476) ##37 RGD1564827 (ENSRNOG00000069712) #36 Tpbpa (ENSRNOG00000039975) Ctla2a (ENSRNOG00000039971) ##37 Testin (ENSRNOG00000018028) ##37 Rat MODERN SPECIES 8 Naa35 (ENSRNOG00000018417) Golm1 (ENSRNOG00000018400) LOC100912252 (ENSRNOG00000042206) Spata31d3 (ENSRNOG00000056413) ##18 Spata31d1b (ENSRNOG00000069288) ##18 Spata31d1 (ENSRNOG00000027014) ##18 AABR07026929.1 (ENSRNOG00000042026) ##18 Isca1 (ENSRNOG00000018343) Tut7 (ENSRNOG00000016629) Dapk1 (ENSRNOG00000018198) RGD1308751 (ENSRNOG00000039954) ##37 Ctsll3 (ENSRNOG00000069877) ##37 Testin (ENSRNOG00000018028) ##37 Ctla2a (ENSRNOG00000039971) ##37 Tpbpa (ENSRNOG00000039975) RGD1564827 (ENSRNOG00000069712) #36 Ctsj (ENSRNOG00000046476) ##37 Ctsql2 (ENSRNOG00000017946) ##37 LOC100364523 (ENSRNOG00000056519) ##37 Ctsq (ENSRNOG00000048693) ##37 AABR07043347.1 (ENSRNOG00000051410) MGC114246 (ENSRNOG00000039990) ##37 Ctsr (ENSRNOG00000017888) ##37 Cts8 (ENSRNOG00000040000) ##37 Cts8l1 (ENSRNOG00000065532) ##37 Cts7 (ENSRNOG00000033540) #37 RGD1564657 (ENSRNOG00000050474) ##37 Ctsm (ENSRNOG00000065730) #36 LOC108348224 (ENSRNOG00000062387) ENSRNOG00000063185 LOC102555902 (ENSRNOG00000068265) Muroidea_A DUPLICATION Muroidea_A DUPLICATION Muroidea_A DUPLICATION Muroidea_A ANCESTRAL SPECIES 14 ENSGT00940000155950 #24 ENSGT00520000055591.b #25 ENSGT00670000098074 #26 ENSGT00940000160237 #27 ENSGT00940000160266 #28 ENSGT00940000161328 #29 ENSGT00940000159011 #30 ENSGT00390000016390 #31 ENSGT00940000155211 #32 ENSGT00390000015513.a.a.a #33 ENSGT00390000015513.a.a.b #34 ENSGT00940000153321.b.b.l.b.b.a.b #36 ENSGT00940000153321.b.b.l.b.b.a.a.b #37 ENSGT00940000153321.b.b.l.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.b ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.b ##37 ENSGT00940000153321.b.b.l.b.b.b.b.a ##37 ENSGT00940000153321.b.b.l.b.b.b.b.b ##37 ENSGT00940000153321.b.b.l.b.a.b ##37 ENSGT00940000153321.b.b.l.b.a.a.a.a ##37 ENSGT00940000153321.b.b.l.b.a.a.a.b ##37 ENSGT00940000153424.a.b ENSGT00390000001195.a ENSGT00940000156859 ENSGT00490000043385 ENSGT00950000183043.a.b.b.a.a.a.b ##18 ENSGT00950000183043.a.b.b.a.b.u.b ##18 ENSGT00940000164141 ENSGT00530000063675.b ENSGT00390000002445 Cricetidae ANCESTRAL SPECIES 22 ENSGT00940000155950 #24 ENSGT00520000055591.b #25 ENSGT00670000098074 #26 ENSGT00940000160237 #27 ENSGT00940000160266 #28 ENSGT00940000161328 #29 ENSGT00940000159011 #30 ENSGT00390000016390 #31 ENSGT00940000155211 #32 ENSGT00390000015513.a.a.a #33 ENSGT00390000015513.a.a.b #34 ENSGT00940000153321.b.b.l.b.b.a.b #36 ENSGT00940000153321.b.b.l.b.b.a.a.b #37 ENSGT00940000153321.b.b.l.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.b ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.b ##37 ENSGT00940000153321.b.b.l.b.b.b.b.a ##37 ENSGT00940000153321.b.b.l.b.b.b.b.b.b ##37 ENSGT00940000153321.b.b.l.b.a.b ##37 ENSGT00940000153321.b.b.l.b.a.a.a.a ##37 ENSGT00940000153321.b.b.l.b.a.a.a.b ##37 ENSGT00940000153424.a.b ENSGT00390000001195.a ENSGT00940000156859 ENSGT00490000043385 ENSGT00950000183043.a.b.b.a.a.a.b ##18 ENSGT00950000183043.a.b.b.a.b.u.b ##18 ENSGT00940000164141 ENSGT00530000063675.b ENSGT00390000002445 Cricetidae_B ANCESTRAL SPECIES 22 ENSGT00940000155950 #24 ENSGT00520000055591.b #25 ENSGT00670000098074 #26 ENSGT00940000160237 #27 ENSGT00940000160266 #28 ENSGT00940000161328 #29 ENSGT00940000159011 #30 ENSGT00390000016390 #31 ENSGT00940000155211 #32 ENSGT00390000015513.a.a.a #33 ENSGT00390000015513.a.a.b #34 ENSGT00940000153321.b.b.l.b.b.a.b #36 ENSGT00940000153321.b.b.l.b.b.a.a.b #37 ENSGT00940000153321.b.b.l.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.b ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.b ##37 ENSGT00940000153321.b.b.l.b.b.b.b.a ##37 ENSGT00940000153321.b.b.l.b.b.b.b.b.a ##37 ENSGT00940000153321.b.b.l.b.a.b ##37 ENSGT00940000153321.b.b.l.b.a.a.a.a ##37 ENSGT00940000153321.b.b.l.b.a.a.a.b ##37 ENSGT00940000153424.a.b ENSGT00390000001195.a ENSGT00940000156859 ENSGT00490000043385 ENSGT00950000183043.a.b.b.a.a.a.b ##18 ENSGT00950000183043.a.b.b.a.b.u.a.b ##18 ENSGT00940000164141 ENSGT00530000063675.b ENSGT00390000002445 Northern American deer mouse MODERN SPECIES 18 ENSPEMG00000021224 #25 Zfp367 (ENSPEMG00000013770) #26 Slc35d2 (ENSPEMG00000021173) #27 Hsd17b3 (ENSPEMG00000021000) #28 ENSPEMG00000006631 #29 Ptch1 (ENSPEMG00000016117) #30 Fancc (ENSPEMG00000022299) #31 Aopep (ENSPEMG00000011169) #32 Fbp1 (ENSPEMG00000020415) #33 Fbp2 (ENSPEMG00000003200) #34 ENSPEMG00000020678 #36 ENSPEMG00000030384 #37 ENSPEMG00000027810 #37 Cts8 (ENSPEMG00000021957) ##37 Cts6 (ENSPEMG00000016021) ##37 Ctsr (ENSPEMG00000001393) ##37 ENSPEMG00000029752 ##37 ENSPEMG00000026728 ##37 Ctsj (ENSPEMG00000015113) ##37 ENSPEMG00000031098 ENSPEMG00000020375 ENSPEMG00000026470 ENSPEMG00000030527 ##37 ENSPEMG00000026019 ##37 ENSPEMG00000028441 ##37 ENSPEMG00000022155 ##37 4930486L24Rik (ENSPEMG00000016874) ##37 Ctsll3 (ENSPEMG00000029464) ##37 BC051665 (ENSPEMG00000025235) ##37 Dapk1 (ENSPEMG00000022627) Gas1 (ENSPEMG00000007789) Cricetinae ANCESTRAL SPECIES ENSGT00940000153321.b.b.l.b.b.b.a.a.a ##37 Golden Hamster MODERN SPECIES 699 Ctsv (ENSMAUG00000000661) Prxl2c (ENSMAUG00000007262) #23 Cdc14b (ENSMAUG00000002176) #24 Habp4 (ENSMAUG00000020977) #25 Zfp367 (ENSMAUG00000019699) #26 Slc35d2 (ENSMAUG00000016504) #27 Hsd17b3 (ENSMAUG00000018759) #28 Ercc6l2 (ENSMAUG00000004820) #29 Ptch1 (ENSMAUG00000014816) #30 Fancc (ENSMAUG00000012407) #31 Aopep (ENSMAUG00000003279) #32 Fbp1 (ENSMAUG00000015819) #33 Fbp2 (ENSMAUG00000017596) #34 ENSMAUG00000016362 #37 Cts8 (ENSMAUG00000018878) ##37 Ctsr (ENSMAUG00000014961) ##37 Cts6 (ENSMAUG00000016662) ##37 Ctsj (ENSMAUG00000008852) ##37 Ctsll3 (ENSMAUG00000014374) ##37 BC051665 (ENSMAUG00000012142) ##37 Dapk1 (ENSMAUG00000000180) Gas1 (ENSMAUG00000019435) Tut7 (ENSMAUG00000006963) ENSMAUG00000000645 1700014D04Rik (ENSMAUG00000020029) ##18 ENSMAUG00000012538 Naa35 (ENSMAUG00000006704) ENSMAUG00000002599 Ntrk2 (ENSMAUG00000014898) Slc28a3 (ENSMAUG00000007466) ENSMAUG00000015268 Murinae ANCESTRAL SPECIES 21 ENSGT00940000155950 #24 ENSGT00520000055591.b #25 ENSGT00670000098074 #26 ENSGT00940000160237 #27 ENSGT00940000160266 #28 ENSGT00940000161328 #29 ENSGT00940000159011 #30 ENSGT00390000016390 #31 ENSGT00940000155211 #32 ENSGT00390000015513.a.a.a #33 ENSGT00390000015513.a.a.b #34 ENSGT00940000153321.b.b.l.b.b.a.b #36 ENSGT00940000153321.b.b.l.b.b.a.a.b.b #37 ENSGT00940000153321.b.b.l.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.b ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.b.e ##37 ENSGT00940000153321.b.b.l.b.b.b.b.a ##37 ENSGT00390000010930 ENSGT00940000153321.b.b.l.b.b.b.b.b ##37 ENSGT00940000153321.b.b.l.b.a.b ##37 ENSGT00940000153321.b.b.l.b.a.a.a.a ##37 ENSGT00940000153321.b.b.l.b.a.a.a.b ##37 ENSGT00940000153424.a.b ENSGT00390000001195.a ENSGT00940000156859 ENSGT00490000043385 ENSGT00950000183043.a.b.b.a.a.a.b ##18 ENSGT00950000183043.a.b.b.a.b.u.b ##18 ENSGT00950000183043.a.b.b.a.b.u.a.b.a ##18 ENSGT00950000183043.a.b.b.a.b.u.a.b.b ##18 Mus ANCESTRAL SPECIES 18 ENSGT00520000055591.b #25 ENSGT00670000098074 #26 ENSGT00940000160237 #27 ENSGT00940000160266 #28 ENSGT00940000161328 #29 ENSGT00940000159011 #30 ENSGT00390000016390 #31 ENSGT00940000155211 #32 ENSGT00390000015513.a.a.a #33 ENSGT00390000015513.a.a.b #34 ENSGT00940000153321.b.b.l.b.b.a.b.b #35 ENSGT00940000153321.b.b.l.b.b.a.b.a #36 ENSGT00940000153321.b.b.l.b.b.a.a.b.b #37 ENSGT00940000153321.b.b.l.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.b ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.b.e ##37 ENSGT00940000153321.b.b.l.b.b.b.b.a ##37 ENSGT00390000010930.a ENSGT00940000153321.b.b.l.b.b.b.b.b ##37 ENSGT00940000153321.b.b.l.b.a.b ##37 ENSGT00940000153321.b.b.l.b.a.a.a.a ##37 ENSGT00940000153321.b.b.l.b.a.a.a.b ##37 ENSGT00940000153424.a.b ENSGT00800000125290 ENSGT00390000001195.a ENSGT00940000156859 ENSGT00490000043385 ENSGT00950000183043.a.b.b.a.a.a.b ##18 ENSGT00950000183043.a.b.b.a.b.u.b ##18 ENSGT00950000183043.a.b.b.a.b.u.a.b.a ##18 Mus_A ANCESTRAL SPECIES 14 ENSGT00520000055591.b #25 ENSGT00670000098074 #26 ENSGT00940000160237 #27 ENSGT00940000160266 #28 ENSGT00940000161328 #29 ENSGT00940000159011 #30 ENSGT00390000016390 #31 ENSGT00940000155211 #32 ENSGT00390000015513.a.a.a #33 ENSGT00390000015513.a.a.b #34 ENSGT00940000153321.b.b.l.b.b.a.b.b #35 ENSGT00940000153321.b.b.l.b.b.a.b.a #36 ENSGT00940000153321.b.b.l.b.b.a.a.b.b #37 ENSGT00940000153321.b.b.l.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.b ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.b.e ##37 ENSGT00940000153321.b.b.l.b.b.b.b.a ##37 ENSGT00390000010930.a ENSGT00390000010930.b ENSGT00940000153321.b.b.l.b.b.b.b.b ##37 ENSGT00940000153321.b.b.l.b.a.b ##37 ENSGT00940000153321.b.b.l.b.a.a.a.a ##37 ENSGT00940000153321.b.b.l.b.a.a.a.b ##37 ENSGT00940000153424.a.b ENSGT00800000125290 ENSGT00390000001195.a ENSGT00940000156859 ENSGT00490000043385 ENSGT00950000183043.a.b.b.a.a.a.b ##18 ENSGT00950000183043.a.b.b.a.b.u.b ##18 Mus_B ANCESTRAL SPECIES 13 ENSGT00520000055591.b #25 ENSGT00670000098074 #26 ENSGT00940000160237 #27 ENSGT00940000160266 #28 ENSGT00940000161328 #29 ENSGT00940000159011 #30 ENSGT00390000016390 #31 ENSGT00940000155211 #32 ENSGT00390000015513.a.a.a #33 ENSGT00390000015513.a.a.b #34 ENSGT00940000153321.b.b.l.b.b.a.b.b #35 ENSGT00940000153321.b.b.l.b.b.a.b.a #36 ENSGT00940000153321.b.b.l.b.b.a.a.b.b #37 ENSGT00940000153321.b.b.l.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.b ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.b.e ##37 ENSGT00940000153321.b.b.l.b.b.b.b.a ##37 ENSGT00390000010930.a ENSGT00940000153321.b.b.l.b.b.b.b.b.d ##37 ENSGT00390000010930.b ENSGT00940000153321.b.b.l.b.b.b.b.b.c ##37 ENSGT00940000153321.b.b.l.b.a.b ##37 ENSGT00940000153321.b.b.l.b.a.a.a.a ##37 ENSGT00940000153321.b.b.l.b.a.a.a.b ##37 ENSGT00940000153424.a.b ENSGT00800000125290 ENSGT00390000001195.a ENSGT00940000156859 ENSGT00490000043385 ENSGT00950000183043.a.b.b.a.a.a.b ##18 Mus_C ANCESTRAL SPECIES 10 ENSGT00520000055591.b #25 ENSGT00670000098074 #26 ENSGT00940000160237 #27 ENSGT00940000160266 #28 ENSGT00940000161328 #29 ENSGT00940000159011 #30 ENSGT00390000016390 #31 ENSGT00940000155211 #32 ENSGT00390000015513.a.a.a #33 ENSGT00390000015513.a.a.b #34 ENSGT00940000153321.b.b.l.b.b.a.b.b #35 ENSGT00940000153321.b.b.l.b.b.a.b.a #36 ENSGT00940000153321.b.b.l.b.b.a.a.b.b #37 ENSGT00940000153321.b.b.l.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.b ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.b.e ##37 ENSGT00940000153321.b.b.l.b.b.b.b.a ##37 ENSGT00390000010930.a ENSGT00940000153321.b.b.l.b.b.b.b.b.d ##37 ENSGT00390000010930.b ENSGT00940000153321.b.b.l.b.b.b.b.b.c ##37 ENSGT00940000153321.b.b.l.b.a.b ##37 ENSGT00940000153321.b.b.l.b.a.a.a.a ##37 ENSGT00940000153321.b.b.l.b.a.a.a.b ##37 ENSGT00940000153424.a.b ENSGT00800000125290 ENSGT00390000001195.a ENSGT00940000156859 ENSGT00490000043385 ENSGT00950000183043.a.b.b.a.a.a.b ##18 Steppe mouse MODERN SPECIES 2052 Cts7 (ENSMSIG00000015541) #37 Cts8 (ENSMSIG00000015619) ##37 Cts6 (ENSMSIG00000015627) ##37 Ctsr (ENSMSIG00000015645) ##37 spretus MODERN SPECIES 4 Habp4 (MGP_SPRETEiJ_G0019519) #25 Zfp367 (MGP_SPRETEiJ_G0019518) #26 Slc35d2 (MGP_SPRETEiJ_G0019517) #27 Hsd17b3 (MGP_SPRETEiJ_G0019516) #28 MGP_SPRETEiJ_G0019515 #29 Ptch1 (MGP_SPRETEiJ_G0019514) #30 Fancc (MGP_SPRETEiJ_G0019513) #31 Aopep (MGP_SPRETEiJ_G0019512) #32 Fbp1 (MGP_SPRETEiJ_G0019511) #33 Fbp2 (MGP_SPRETEiJ_G0019510) #34 MGP_SPRETEiJ_G0019509 #35 Ctsm (MGP_SPRETEiJ_G0019508) #36 Cts7 (MGP_SPRETEiJ_G0019507) #37 Cts8 (MGP_SPRETEiJ_G0019506) ##37 Cts6 (MGP_SPRETEiJ_G0019505) ##37 Ctsr (MGP_SPRETEiJ_G0019504) ##37 Ctsq (MGP_SPRETEiJ_G0019503) ##37 Ctsj (MGP_SPRETEiJ_G0019502) ##37 MGP_SPRETEiJ_G0019501 Ctla2a (MGP_SPRETEiJ_G0019500) ##37 Tpbpb (MGP_SPRETEiJ_G0019499) Ctla2b (MGP_SPRETEiJ_G0019498) ##37 4930486L24Rik (MGP_SPRETEiJ_G0019497) ##37 Ctsll3 (MGP_SPRETEiJ_G0019496) ##37 BC051665 (MGP_SPRETEiJ_G0019495) ##37 Dapk1 (MGP_SPRETEiJ_G0019494) MGP_SPRETEiJ_G0019493 Gas1 (MGP_SPRETEiJ_G0019492) Tut7 (MGP_SPRETEiJ_G0019491) MGP_SPRETEiJ_G0019490 1700014D04Rik (MGP_SPRETEiJ_G0019489) ##18 Mouse MODERN SPECIES 4 Fbp2 (ENSMUSG00000021456) #34 Gm5141 (ENSMUSG00000091183) Platr25 (ENSMUSG00000074863) 6720489N17Rik (ENSMUSG00000072066) Zfp934 (ENSMUSG00000074865) Gm49359 (ENSMUSG00000055228) Zfp935 (ENSMUSG00000113450) Gm3604 (ENSMUSG00000094942) Zfp808 (ENSMUSG00000074867) Cts3 (ENSMUSG00000074870) #35 Gm49352 (ENSMUSG00000114904) Ctsm (ENSMUSG00000074871) #36 Cts7 (ENSMUSG00000021440) #37 Cts8 (ENSMUSG00000057446) ##37 Cts6 (ENSMUSG00000021441) ##37 Ctsr (ENSMUSG00000055679) ##37 Ctsq (ENSMUSG00000021439) ##37 Ctsj (ENSMUSG00000055298) ##37 Tpbpa (ENSMUSG00000033834) Ctla2a (ENSMUSG00000044258) ##37 Tpbpb (ENSMUSG00000062705) Gm49391 (ENSMUSG00000114432) Ctla2b (ENSMUSG00000074874) ##37 4930486L24Rik (ENSMUSG00000050345) ##37 Ctsll3 (ENSMUSG00000056728) ##37 BC051665 (ENSMUSG00000042243) ##37 Dapk1 (ENSMUSG00000021559) Gas1 (ENSMUSG00000052957) Tut7 (ENSMUSG00000035248) Isca1 (ENSMUSG00000044792) 1700014D04Rik (ENSMUSG00000051054) ##18 Ryukyu mouse MODERN SPECIES 4 Habp4 (MGP_CAROLIEiJ_G0018639) #25 Zfp367 (MGP_CAROLIEiJ_G0018638) #26 Slc35d2 (MGP_CAROLIEiJ_G0018637) #27 Hsd17b3 (MGP_CAROLIEiJ_G0018636) #28 MGP_CAROLIEiJ_G0018635 #29 Ptch1 (MGP_CAROLIEiJ_G0018634) #30 Fancc (MGP_CAROLIEiJ_G0018633) #31 Aopep (MGP_CAROLIEiJ_G0018632) #32 Fbp1 (MGP_CAROLIEiJ_G0018631) #33 Fbp2 (MGP_CAROLIEiJ_G0018630) #34 MGP_CAROLIEiJ_G0018629 #35 Ctsm (MGP_CAROLIEiJ_G0018628) #36 Cts7 (MGP_CAROLIEiJ_G0018627) #37 Cts8 (MGP_CAROLIEiJ_G0018626) ##37 Cts6 (MGP_CAROLIEiJ_G0018625) ##37 Ctsr (MGP_CAROLIEiJ_G0018624) ##37 Ctsj (MGP_CAROLIEiJ_G0018623) ##37 MGP_CAROLIEiJ_G0018622 Tpbpb (MGP_CAROLIEiJ_G0018621) MGP_CAROLIEiJ_G0018620 ##37 MGP_CAROLIEiJ_G0018619 ##37 4930486L24Rik (MGP_CAROLIEiJ_G0018618) ##37 Ctsll3 (MGP_CAROLIEiJ_G0018617) ##37 BC051665 (MGP_CAROLIEiJ_G0018616) ##37 Dapk1 (MGP_CAROLIEiJ_G0018615) MGP_CAROLIEiJ_G0018614 Gas1 (MGP_CAROLIEiJ_G0018613) Tut7 (MGP_CAROLIEiJ_G0018612) MGP_CAROLIEiJ_G0018611 1700014D04Rik (MGP_CAROLIEiJ_G0018610) ##18 Spata31d1d (MGP_CAROLIEiJ_G0018609) ##18 Shrew mouse MODERN SPECIES 7 Habp4 (MGP_PahariEiJ_G0019703) #25 Zfp367 (MGP_PahariEiJ_G0019702) #26 Slc35d2 (MGP_PahariEiJ_G0019701) #27 Hsd17b3 (MGP_PahariEiJ_G0019700) #28 MGP_PahariEiJ_G0019699 #29 Ptch1 (MGP_PahariEiJ_G0019698) #30 Fancc (MGP_PahariEiJ_G0019697) #31 Aopep (MGP_PahariEiJ_G0019696) #32 Fbp1 (MGP_PahariEiJ_G0019695) #33 Fbp2 (MGP_PahariEiJ_G0019694) #34 MGP_PahariEiJ_G0019693 #35 MGP_PahariEiJ_G0019692 #36 Cts7 (MGP_PahariEiJ_G0019691) #37 Cts8 (MGP_PahariEiJ_G0019690) ##37 Cts6 (MGP_PahariEiJ_G0019689) ##37 Ctsr (MGP_PahariEiJ_G0019688) ##37 Ctsj (MGP_PahariEiJ_G0019687) ##37 MGP_PahariEiJ_G0019686 MGP_PahariEiJ_G0019685 MGP_PahariEiJ_G0019684 ##37 MGP_PahariEiJ_G0019683 ##37 4930486L24Rik (MGP_PahariEiJ_G0019682) ##37 Ctsll3 (MGP_PahariEiJ_G0019681) ##37 BC051665 (MGP_PahariEiJ_G0019680) ##37 Dapk1 (MGP_PahariEiJ_G0019679) MGP_PahariEiJ_G0019678 Gas1 (MGP_PahariEiJ_G0019677) Tut7 (MGP_PahariEiJ_G0019676) MGP_PahariEiJ_G0019675 1700014D04Rik (MGP_PahariEiJ_G0019674) ##18 Spata31d1d (MGP_PahariEiJ_G0019673) ##18 Rat MODERN SPECIES 8 LOC102552000 (ENSRNOG00000070106) ENSRNOG00000065506 LOC102549249 (ENSRNOG00000063621) ENSRNOG00000064579 LOC102549249 (ENSRNOG00000067517) AABR07028805.1 (ENSRNOG00000040024) LOC102555902 (ENSRNOG00000068265) ENSRNOG00000063185 LOC108348224 (ENSRNOG00000062387) Ctsm (ENSRNOG00000065730) #36 RGD1564657 (ENSRNOG00000050474) ##37 Cts7 (ENSRNOG00000033540) #37 Cts8l1 (ENSRNOG00000065532) ##37 Cts8 (ENSRNOG00000040000) ##37 Ctsr (ENSRNOG00000017888) ##37 MGC114246 (ENSRNOG00000039990) ##37 AABR07043347.1 (ENSRNOG00000051410) Ctsq (ENSRNOG00000048693) ##37 LOC100364523 (ENSRNOG00000056519) ##37 Ctsql2 (ENSRNOG00000017946) ##37 Ctsj (ENSRNOG00000046476) ##37 RGD1564827 (ENSRNOG00000069712) #36 Tpbpa (ENSRNOG00000039975) Ctla2a (ENSRNOG00000039971) ##37 Testin (ENSRNOG00000018028) ##37 Ctsll3 (ENSRNOG00000069877) ##37 RGD1308751 (ENSRNOG00000039954) ##37 Dapk1 (ENSRNOG00000018198) Tut7 (ENSRNOG00000016629) Isca1 (ENSRNOG00000018343) AABR07026929.1 (ENSRNOG00000042026) ##18 Muroidea_A ANCESTRAL SPECIES 14 ENSGT00510000048363 #23 ENSGT00940000155950 #24 ENSGT00520000055591.b #25 ENSGT00670000098074 #26 ENSGT00940000160237 #27 ENSGT00940000160266 #28 ENSGT00940000161328 #29 ENSGT00940000159011 #30 ENSGT00390000016390 #31 ENSGT00940000155211 #32 ENSGT00390000015513.a.a.a #33 ENSGT00390000015513.a.a.b #34 ENSGT00940000153321.b.b.l.b.b.a.b #36 ENSGT00940000153321.b.b.l.b.b.a.a.b #37 ENSGT00940000153321.b.b.l.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.b ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.b ##37 ENSGT00940000153321.b.b.l.b.b.b.b.a ##37 ENSGT00940000153321.b.b.l.b.b.b.b.b ##37 ENSGT00940000153321.b.b.l.b.a.b ##37 ENSGT00940000153321.b.b.l.b.a.a.a.a ##37 ENSGT00940000153321.b.b.l.b.a.a.a.b ##37 ENSGT00940000153424.a.b ENSGT00390000001195.a ENSGT00940000156859 ENSGT00490000043385 ENSGT00950000183043.a.b.b.a.a.a.b ##18 ENSGT00950000183043.a.b.b.a.b.u.b ##18 ENSGT00940000164141 ENSGT00530000063675.b Cricetidae ANCESTRAL SPECIES 22 ENSGT00510000048363 #23 ENSGT00940000155950 #24 ENSGT00520000055591.b #25 ENSGT00670000098074 #26 ENSGT00940000160237 #27 ENSGT00940000160266 #28 ENSGT00940000161328 #29 ENSGT00940000159011 #30 ENSGT00390000016390 #31 ENSGT00940000155211 #32 ENSGT00390000015513.a.a.a #33 ENSGT00390000015513.a.a.b #34 ENSGT00940000153321.b.b.l.b.b.a.b #36 ENSGT00940000153321.b.b.l.b.b.a.a.b #37 ENSGT00940000153321.b.b.l.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.b ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.b ##37 ENSGT00940000153321.b.b.l.b.b.b.b.a ##37 ENSGT00940000153321.b.b.l.b.b.b.b.b.b ##37 ENSGT00940000153321.b.b.l.b.a.b ##37 ENSGT00940000153321.b.b.l.b.a.a.a.a ##37 ENSGT00940000153321.b.b.l.b.a.a.a.b ##37 ENSGT00940000153424.a.b ENSGT00390000001195.a ENSGT00940000156859 ENSGT00490000043385 ENSGT00950000183043.a.b.b.a.a.a.b ##18 ENSGT00950000183043.a.b.b.a.b.u.b ##18 ENSGT00940000164141 ENSGT00530000063675.b Cricetinae ANCESTRAL SPECIES 20 ENSGT00940000154367.a ENSGT00510000048363 #23 ENSGT00940000155950 #24 ENSGT00520000055591.b #25 ENSGT00670000098074 #26 ENSGT00940000160237 #27 ENSGT00940000160266 #28 ENSGT00940000161328 #29 ENSGT00940000159011 #30 ENSGT00390000016390 #31 ENSGT00940000155211 #32 ENSGT00390000015513.a.a.a #33 ENSGT00390000015513.a.a.b #34 ENSGT00940000153321.b.b.l.b.b.a.a.b #37 ENSGT00940000153321.b.b.l.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.b ##37 ENSGT00940000153321.b.b.l.b.b.b.a.b ##37 ENSGT00940000153321.b.b.l.b.b.b.b.a ##37 ENSGT00940000153321.b.b.l.b.b.b.b.b.b ##37 ENSGT00940000153321.b.b.l.b.a.b ##37 ENSGT00940000153321.b.b.l.b.a.a.a.a ##37 ENSGT00940000153321.b.b.l.b.a.a.a.b ##37 ENSGT00940000153424.a.b ENSGT00390000001195.a ENSGT00940000156859 ENSGT00490000043385 ENSGT00950000183043.a.b.b.a.a.a.b ##18 ENSGT00950000183043.a.b.b.a.b.u.b ##18 ENSGT00940000164141 ENSGT00530000063675.b ENSGT00390000002445 Chinese hamster chok1gshd MODERN SPECIES 317 Prxl2c (ENSCGRG00001003859) #23 ENSCGRG00001002667 Cdc14b (ENSCGRG00001019066) #24 Habp4 (ENSCGRG00001025040) #25 Zfp367 (ENSCGRG00001022531) #26 Slc35d2 (ENSCGRG00001020192) #27 Hsd17b3 (ENSCGRG00001009870) #28 ENSCGRG00001022738 #29 ENSCGRG00001008618 Ptch1 (ENSCGRG00001010176) #30 Fancc (ENSCGRG00001013491) #31 Aopep (ENSCGRG00001012713) #32 Fbp1 (ENSCGRG00001009150) #33 Fbp2 (ENSCGRG00001022515) #34 Cts8 (ENSCGRG00001013704) ##37 Cts6 (ENSCGRG00001022925) ##37 Ctsq (ENSCGRG00001002399) ##37 Ctsj (ENSCGRG00001024764) ##37 ENSCGRG00001015895 ##37 ENSCGRG00001024602 ##37 4930486L24Rik (ENSCGRG00001023066) ##37 ENSCGRG00001019274 ##37 ENSCGRG00001014152 ##37 BC051665 (ENSCGRG00001008665) ##37 Dapk1 (ENSCGRG00001000497) Gas1 (ENSCGRG00001010171) Tut7 (ENSCGRG00001020605) ENSCGRG00001007037 1700014D04Rik (ENSCGRG00001022165) ##18 Spata31d1d (ENSCGRG00001011836) ##18 ENSCGRG00001001460 Golden Hamster MODERN SPECIES 699 Prxl2c (ENSMAUG00000007262) #23 Cdc14b (ENSMAUG00000002176) #24 Habp4 (ENSMAUG00000020977) #25 Zfp367 (ENSMAUG00000019699) #26 Slc35d2 (ENSMAUG00000016504) #27 Hsd17b3 (ENSMAUG00000018759) #28 Ercc6l2 (ENSMAUG00000004820) #29 Ptch1 (ENSMAUG00000014816) #30 Fancc (ENSMAUG00000012407) #31 Aopep (ENSMAUG00000003279) #32 Fbp1 (ENSMAUG00000015819) #33 Fbp2 (ENSMAUG00000017596) #34 ENSMAUG00000016362 #37 Cts8 (ENSMAUG00000018878) ##37 Ctsr (ENSMAUG00000014961) ##37 Cts6 (ENSMAUG00000016662) ##37 Ctsj (ENSMAUG00000008852) ##37 Ctsll3 (ENSMAUG00000014374) ##37 BC051665 (ENSMAUG00000012142) ##37 Dapk1 (ENSMAUG00000000180) Gas1 (ENSMAUG00000019435) Tut7 (ENSMAUG00000006963) ENSMAUG00000000645 1700014D04Rik (ENSMAUG00000020029) ##18 ENSMAUG00000012538 Naa35 (ENSMAUG00000006704) ENSMAUG00000002599 Ntrk2 (ENSMAUG00000014898) Slc28a3 (ENSMAUG00000007466) ENSMAUG00000015268 2210016F16Rik (ENSMAUG00000001833) Cricetidae_B ANCESTRAL SPECIES 22 ENSGT00510000048363 #23 ENSGT00940000155950 #24 ENSGT00520000055591.b #25 ENSGT00670000098074 #26 ENSGT00940000160237 #27 ENSGT00940000160266 #28 ENSGT00940000161328 #29 ENSGT00940000159011 #30 ENSGT00390000016390 #31 ENSGT00940000155211 #32 ENSGT00390000015513.a.a.a #33 ENSGT00390000015513.a.a.b #34 ENSGT00940000153321.b.b.l.b.b.a.b #36 ENSGT00940000153321.b.b.l.b.b.a.a.b #37 ENSGT00940000153321.b.b.l.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.b ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.b ##37 ENSGT00940000153321.b.b.l.b.b.b.b.a ##37 ENSGT00940000153321.b.b.l.b.b.b.b.b.a ##37 ENSGT00940000153321.b.b.l.b.a.b ##37 ENSGT00940000153321.b.b.l.b.a.a.a.a ##37 ENSGT00940000153321.b.b.l.b.a.a.a.b ##37 ENSGT00940000153424.a.b ENSGT00390000001195.a ENSGT00940000156859 ENSGT00490000043385 ENSGT00950000183043.a.b.b.a.a.a.b ##18 ENSGT00950000183043.a.b.b.a.b.u.a.b ##18 ENSGT00940000164141 ENSGT00530000063675.b Northern American deer mouse MODERN SPECIES 18 Cdc14b (ENSPEMG00000020534) #24 ENSPEMG00000021224 #25 Zfp367 (ENSPEMG00000013770) #26 Slc35d2 (ENSPEMG00000021173) #27 Hsd17b3 (ENSPEMG00000021000) #28 ENSPEMG00000006631 #29 Ptch1 (ENSPEMG00000016117) #30 Fancc (ENSPEMG00000022299) #31 Aopep (ENSPEMG00000011169) #32 Fbp1 (ENSPEMG00000020415) #33 Fbp2 (ENSPEMG00000003200) #34 ENSPEMG00000020678 #36 ENSPEMG00000030384 #37 ENSPEMG00000027810 #37 Cts8 (ENSPEMG00000021957) ##37 Cts6 (ENSPEMG00000016021) ##37 Ctsr (ENSPEMG00000001393) ##37 ENSPEMG00000029752 ##37 ENSPEMG00000026728 ##37 Ctsj (ENSPEMG00000015113) ##37 ENSPEMG00000031098 ENSPEMG00000020375 ENSPEMG00000026470 ENSPEMG00000030527 ##37 ENSPEMG00000026019 ##37 ENSPEMG00000028441 ##37 ENSPEMG00000022155 ##37 4930486L24Rik (ENSPEMG00000016874) ##37 Ctsll3 (ENSPEMG00000029464) ##37 BC051665 (ENSPEMG00000025235) ##37 Dapk1 (ENSPEMG00000022627) Murinae ANCESTRAL SPECIES 21 ENSGT00510000048363 #23 ENSGT00940000155950 #24 ENSGT00520000055591.b #25 ENSGT00670000098074 #26 ENSGT00940000160237 #27 ENSGT00940000160266 #28 ENSGT00940000161328 #29 ENSGT00940000159011 #30 ENSGT00390000016390 #31 ENSGT00940000155211 #32 ENSGT00390000015513.a.a.a #33 ENSGT00390000015513.a.a.b #34 ENSGT00940000153321.b.b.l.b.b.a.b #36 ENSGT00940000153321.b.b.l.b.b.a.a.b.b #37 ENSGT00940000153321.b.b.l.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.b ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.b.e ##37 ENSGT00940000153321.b.b.l.b.b.b.b.a ##37 ENSGT00390000010930 ENSGT00940000153321.b.b.l.b.b.b.b.b ##37 ENSGT00940000153321.b.b.l.b.a.b ##37 ENSGT00940000153321.b.b.l.b.a.a.a.a ##37 ENSGT00940000153321.b.b.l.b.a.a.a.b ##37 ENSGT00940000153424.a.b ENSGT00390000001195.a ENSGT00940000156859 ENSGT00490000043385 ENSGT00950000183043.a.b.b.a.a.a.b ##18 ENSGT00950000183043.a.b.b.a.b.u.b ##18 ENSGT00950000183043.a.b.b.a.b.u.a.b.a ##18 Mus ANCESTRAL SPECIES 18 ENSGT00940000155950 #24 ENSGT00520000055591.b #25 ENSGT00670000098074 #26 ENSGT00940000160237 #27 ENSGT00940000160266 #28 ENSGT00940000161328 #29 ENSGT00940000159011 #30 ENSGT00390000016390 #31 ENSGT00940000155211 #32 ENSGT00390000015513.a.a.a #33 ENSGT00390000015513.a.a.b #34 ENSGT00940000153321.b.b.l.b.b.a.b.b #35 ENSGT00940000153321.b.b.l.b.b.a.b.a #36 ENSGT00940000153321.b.b.l.b.b.a.a.b.b #37 ENSGT00940000153321.b.b.l.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.b ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.b.e ##37 ENSGT00940000153321.b.b.l.b.b.b.b.a ##37 ENSGT00390000010930.a ENSGT00940000153321.b.b.l.b.b.b.b.b ##37 ENSGT00940000153321.b.b.l.b.a.b ##37 ENSGT00940000153321.b.b.l.b.a.a.a.a ##37 ENSGT00940000153321.b.b.l.b.a.a.a.b ##37 ENSGT00940000153424.a.b ENSGT00800000125290 ENSGT00390000001195.a ENSGT00940000156859 ENSGT00490000043385 ENSGT00950000183043.a.b.b.a.a.a.b ##18 ENSGT00950000183043.a.b.b.a.b.u.b ##18 Mus_A ANCESTRAL SPECIES 14 ENSGT00940000155950 #24 ENSGT00520000055591.b #25 ENSGT00670000098074 #26 ENSGT00940000160237 #27 ENSGT00940000160266 #28 ENSGT00940000161328 #29 ENSGT00940000159011 #30 ENSGT00390000016390 #31 ENSGT00940000155211 #32 ENSGT00390000015513.a.a.a #33 ENSGT00390000015513.a.a.b #34 ENSGT00940000153321.b.b.l.b.b.a.b.b #35 ENSGT00940000153321.b.b.l.b.b.a.b.a #36 ENSGT00940000153321.b.b.l.b.b.a.a.b.b #37 ENSGT00940000153321.b.b.l.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.b ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.b.e ##37 ENSGT00940000153321.b.b.l.b.b.b.b.a ##37 ENSGT00390000010930.a ENSGT00390000010930.b ENSGT00940000153321.b.b.l.b.b.b.b.b ##37 ENSGT00940000153321.b.b.l.b.a.b ##37 ENSGT00940000153321.b.b.l.b.a.a.a.a ##37 ENSGT00940000153321.b.b.l.b.a.a.a.b ##37 ENSGT00940000153424.a.b ENSGT00800000125290 ENSGT00390000001195.a ENSGT00940000156859 ENSGT00490000043385 ENSGT00950000183043.a.b.b.a.a.a.b ##18 Mus_B ANCESTRAL SPECIES 13 ENSGT00940000155950 #24 ENSGT00520000055591.b #25 ENSGT00670000098074 #26 ENSGT00940000160237 #27 ENSGT00940000160266 #28 ENSGT00940000161328 #29 ENSGT00940000159011 #30 ENSGT00390000016390 #31 ENSGT00940000155211 #32 ENSGT00390000015513.a.a.a #33 ENSGT00390000015513.a.a.b #34 ENSGT00940000153321.b.b.l.b.b.a.b.b #35 ENSGT00940000153321.b.b.l.b.b.a.b.a #36 ENSGT00940000153321.b.b.l.b.b.a.a.b.b #37 ENSGT00940000153321.b.b.l.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.b ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.b.e ##37 ENSGT00940000153321.b.b.l.b.b.b.b.a ##37 ENSGT00390000010930.a ENSGT00940000153321.b.b.l.b.b.b.b.b.d ##37 ENSGT00390000010930.b ENSGT00940000153321.b.b.l.b.b.b.b.b.c ##37 ENSGT00940000153321.b.b.l.b.a.b ##37 ENSGT00940000153321.b.b.l.b.a.a.a.a ##37 ENSGT00940000153321.b.b.l.b.a.a.a.b ##37 ENSGT00940000153424.a.b ENSGT00800000125290 ENSGT00390000001195.a ENSGT00940000156859 ENSGT00490000043385 Mus_C ANCESTRAL SPECIES 10 ENSGT00940000155950 #24 ENSGT00520000055591.b #25 ENSGT00670000098074 #26 ENSGT00940000160237 #27 ENSGT00940000160266 #28 ENSGT00940000161328 #29 ENSGT00940000159011 #30 ENSGT00390000016390 #31 ENSGT00940000155211 #32 ENSGT00390000015513.a.a.a #33 ENSGT00390000015513.a.a.b #34 ENSGT00940000153321.b.b.l.b.b.a.b.b #35 ENSGT00940000153321.b.b.l.b.b.a.b.a #36 ENSGT00940000153321.b.b.l.b.b.a.a.b.b #37 ENSGT00940000153321.b.b.l.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.b ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.b.e ##37 ENSGT00940000153321.b.b.l.b.b.b.b.a ##37 ENSGT00390000010930.a ENSGT00940000153321.b.b.l.b.b.b.b.b.d ##37 ENSGT00390000010930.b ENSGT00940000153321.b.b.l.b.b.b.b.b.c ##37 ENSGT00940000153321.b.b.l.b.a.b ##37 ENSGT00940000153321.b.b.l.b.a.a.a.a ##37 ENSGT00940000153321.b.b.l.b.a.a.a.b ##37 ENSGT00940000153424.a.b ENSGT00800000125290 ENSGT00390000001195.a ENSGT00940000156859 ENSGT00490000043385 spretus MODERN SPECIES 4 Cdc14b (MGP_SPRETEiJ_G0019520) #24 Habp4 (MGP_SPRETEiJ_G0019519) #25 Zfp367 (MGP_SPRETEiJ_G0019518) #26 Slc35d2 (MGP_SPRETEiJ_G0019517) #27 Hsd17b3 (MGP_SPRETEiJ_G0019516) #28 MGP_SPRETEiJ_G0019515 #29 Ptch1 (MGP_SPRETEiJ_G0019514) #30 Fancc (MGP_SPRETEiJ_G0019513) #31 Aopep (MGP_SPRETEiJ_G0019512) #32 Fbp1 (MGP_SPRETEiJ_G0019511) #33 Fbp2 (MGP_SPRETEiJ_G0019510) #34 MGP_SPRETEiJ_G0019509 #35 Ctsm (MGP_SPRETEiJ_G0019508) #36 Cts7 (MGP_SPRETEiJ_G0019507) #37 Cts8 (MGP_SPRETEiJ_G0019506) ##37 Cts6 (MGP_SPRETEiJ_G0019505) ##37 Ctsr (MGP_SPRETEiJ_G0019504) ##37 Ctsq (MGP_SPRETEiJ_G0019503) ##37 Ctsj (MGP_SPRETEiJ_G0019502) ##37 MGP_SPRETEiJ_G0019501 Ctla2a (MGP_SPRETEiJ_G0019500) ##37 Tpbpb (MGP_SPRETEiJ_G0019499) Ctla2b (MGP_SPRETEiJ_G0019498) ##37 4930486L24Rik (MGP_SPRETEiJ_G0019497) ##37 Ctsll3 (MGP_SPRETEiJ_G0019496) ##37 BC051665 (MGP_SPRETEiJ_G0019495) ##37 Dapk1 (MGP_SPRETEiJ_G0019494) MGP_SPRETEiJ_G0019493 Gas1 (MGP_SPRETEiJ_G0019492) Tut7 (MGP_SPRETEiJ_G0019491) MGP_SPRETEiJ_G0019490 Steppe mouse MODERN SPECIES 2052 Cts7 (ENSMSIG00000015541) #37 Cts8 (ENSMSIG00000015619) ##37 Cts6 (ENSMSIG00000015627) ##37 Ctsr (ENSMSIG00000015645) ##37 Mouse MODERN SPECIES 4 Fbp1 (ENSMUSG00000069805) #33 Fbp2 (ENSMUSG00000021456) #34 Gm5141 (ENSMUSG00000091183) Platr25 (ENSMUSG00000074863) 6720489N17Rik (ENSMUSG00000072066) Zfp934 (ENSMUSG00000074865) Gm49359 (ENSMUSG00000055228) Zfp935 (ENSMUSG00000113450) Gm3604 (ENSMUSG00000094942) Zfp808 (ENSMUSG00000074867) Cts3 (ENSMUSG00000074870) #35 Gm49352 (ENSMUSG00000114904) Ctsm (ENSMUSG00000074871) #36 Cts7 (ENSMUSG00000021440) #37 Cts8 (ENSMUSG00000057446) ##37 Cts6 (ENSMUSG00000021441) ##37 Ctsr (ENSMUSG00000055679) ##37 Ctsq (ENSMUSG00000021439) ##37 Ctsj (ENSMUSG00000055298) ##37 Tpbpa (ENSMUSG00000033834) Ctla2a (ENSMUSG00000044258) ##37 Tpbpb (ENSMUSG00000062705) Gm49391 (ENSMUSG00000114432) Ctla2b (ENSMUSG00000074874) ##37 4930486L24Rik (ENSMUSG00000050345) ##37 Ctsll3 (ENSMUSG00000056728) ##37 BC051665 (ENSMUSG00000042243) ##37 Dapk1 (ENSMUSG00000021559) Gas1 (ENSMUSG00000052957) Tut7 (ENSMUSG00000035248) Isca1 (ENSMUSG00000044792) Ryukyu mouse MODERN SPECIES 4 Cdc14b (MGP_CAROLIEiJ_G0018640) #24 Habp4 (MGP_CAROLIEiJ_G0018639) #25 Zfp367 (MGP_CAROLIEiJ_G0018638) #26 Slc35d2 (MGP_CAROLIEiJ_G0018637) #27 Hsd17b3 (MGP_CAROLIEiJ_G0018636) #28 MGP_CAROLIEiJ_G0018635 #29 Ptch1 (MGP_CAROLIEiJ_G0018634) #30 Fancc (MGP_CAROLIEiJ_G0018633) #31 Aopep (MGP_CAROLIEiJ_G0018632) #32 Fbp1 (MGP_CAROLIEiJ_G0018631) #33 Fbp2 (MGP_CAROLIEiJ_G0018630) #34 MGP_CAROLIEiJ_G0018629 #35 Ctsm (MGP_CAROLIEiJ_G0018628) #36 Cts7 (MGP_CAROLIEiJ_G0018627) #37 Cts8 (MGP_CAROLIEiJ_G0018626) ##37 Cts6 (MGP_CAROLIEiJ_G0018625) ##37 Ctsr (MGP_CAROLIEiJ_G0018624) ##37 Ctsj (MGP_CAROLIEiJ_G0018623) ##37 MGP_CAROLIEiJ_G0018622 Tpbpb (MGP_CAROLIEiJ_G0018621) MGP_CAROLIEiJ_G0018620 ##37 MGP_CAROLIEiJ_G0018619 ##37 4930486L24Rik (MGP_CAROLIEiJ_G0018618) ##37 Ctsll3 (MGP_CAROLIEiJ_G0018617) ##37 BC051665 (MGP_CAROLIEiJ_G0018616) ##37 Dapk1 (MGP_CAROLIEiJ_G0018615) MGP_CAROLIEiJ_G0018614 Gas1 (MGP_CAROLIEiJ_G0018613) Tut7 (MGP_CAROLIEiJ_G0018612) MGP_CAROLIEiJ_G0018611 1700014D04Rik (MGP_CAROLIEiJ_G0018610) ##18 Shrew mouse MODERN SPECIES 7 Cdc14b (MGP_PahariEiJ_G0019704) #24 Habp4 (MGP_PahariEiJ_G0019703) #25 Zfp367 (MGP_PahariEiJ_G0019702) #26 Slc35d2 (MGP_PahariEiJ_G0019701) #27 Hsd17b3 (MGP_PahariEiJ_G0019700) #28 MGP_PahariEiJ_G0019699 #29 Ptch1 (MGP_PahariEiJ_G0019698) #30 Fancc (MGP_PahariEiJ_G0019697) #31 Aopep (MGP_PahariEiJ_G0019696) #32 Fbp1 (MGP_PahariEiJ_G0019695) #33 Fbp2 (MGP_PahariEiJ_G0019694) #34 MGP_PahariEiJ_G0019693 #35 MGP_PahariEiJ_G0019692 #36 Cts7 (MGP_PahariEiJ_G0019691) #37 Cts8 (MGP_PahariEiJ_G0019690) ##37 Cts6 (MGP_PahariEiJ_G0019689) ##37 Ctsr (MGP_PahariEiJ_G0019688) ##37 Ctsj (MGP_PahariEiJ_G0019687) ##37 MGP_PahariEiJ_G0019686 MGP_PahariEiJ_G0019685 MGP_PahariEiJ_G0019684 ##37 MGP_PahariEiJ_G0019683 ##37 4930486L24Rik (MGP_PahariEiJ_G0019682) ##37 Ctsll3 (MGP_PahariEiJ_G0019681) ##37 BC051665 (MGP_PahariEiJ_G0019680) ##37 Dapk1 (MGP_PahariEiJ_G0019679) MGP_PahariEiJ_G0019678 Gas1 (MGP_PahariEiJ_G0019677) Tut7 (MGP_PahariEiJ_G0019676) MGP_PahariEiJ_G0019675 1700014D04Rik (MGP_PahariEiJ_G0019674) ##18 Rat MODERN SPECIES 8 LOC102552000 (ENSRNOG00000068835) LOC102552000 (ENSRNOG00000070106) ENSRNOG00000065506 LOC102549249 (ENSRNOG00000063621) ENSRNOG00000064579 LOC102549249 (ENSRNOG00000067517) AABR07028805.1 (ENSRNOG00000040024) LOC102555902 (ENSRNOG00000068265) ENSRNOG00000063185 LOC108348224 (ENSRNOG00000062387) Ctsm (ENSRNOG00000065730) #36 RGD1564657 (ENSRNOG00000050474) ##37 Cts7 (ENSRNOG00000033540) #37 Cts8l1 (ENSRNOG00000065532) ##37 Cts8 (ENSRNOG00000040000) ##37 Ctsr (ENSRNOG00000017888) ##37 MGC114246 (ENSRNOG00000039990) ##37 AABR07043347.1 (ENSRNOG00000051410) Ctsq (ENSRNOG00000048693) ##37 LOC100364523 (ENSRNOG00000056519) ##37 Ctsql2 (ENSRNOG00000017946) ##37 Ctsj (ENSRNOG00000046476) ##37 RGD1564827 (ENSRNOG00000069712) #36 Tpbpa (ENSRNOG00000039975) Ctla2a (ENSRNOG00000039971) ##37 Testin (ENSRNOG00000018028) ##37 Ctsll3 (ENSRNOG00000069877) ##37 RGD1308751 (ENSRNOG00000039954) ##37 Dapk1 (ENSRNOG00000018198) Tut7 (ENSRNOG00000016629) Isca1 (ENSRNOG00000018343) Muroidea_A ANCESTRAL SPECIES 14 ENSGT00520000055591.b #25 ENSGT00670000098074 #26 ENSGT00940000160237 #27 ENSGT00940000160266 #28 ENSGT00940000161328 #29 ENSGT00940000159011 #30 ENSGT00390000016390 #31 ENSGT00940000155211 #32 ENSGT00390000015513.a.a.a #33 ENSGT00390000015513.a.a.b #34 ENSGT00940000153321.b.b.l.b.b.a.b #36 ENSGT00940000153321.b.b.l.b.b.a.a.b #37 ENSGT00940000153321.b.b.l.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.b ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.b ##37 ENSGT00940000153321.b.b.l.b.b.b.b.a ##37 ENSGT00940000153321.b.b.l.b.b.b.b.b ##37 ENSGT00940000153321.b.b.l.b.a.b ##37 ENSGT00940000153321.b.b.l.b.a.a.a.a ##37 ENSGT00940000153321.b.b.l.b.a.a.a.b ##37 ENSGT00940000153424.a.b ENSGT00390000001195.a ENSGT00940000156859 ENSGT00490000043385 ENSGT00950000183043.a.b.b.a.a.a.b ##18 ENSGT00950000183043.a.b.b.a.b.u.b ##18 ENSGT00940000164141 ENSGT00530000063675.b ENSGT00390000002445 ENSGT00940000157707 Cricetidae ANCESTRAL SPECIES 22 ENSGT00520000055591.b #25 ENSGT00670000098074 #26 ENSGT00940000160237 #27 ENSGT00940000160266 #28 ENSGT00940000161328 #29 ENSGT00940000159011 #30 ENSGT00390000016390 #31 ENSGT00940000155211 #32 ENSGT00390000015513.a.a.a #33 ENSGT00390000015513.a.a.b #34 ENSGT00940000153321.b.b.l.b.b.a.b #36 ENSGT00940000153321.b.b.l.b.b.a.a.b #37 ENSGT00940000153321.b.b.l.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.b ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.b ##37 ENSGT00940000153321.b.b.l.b.b.b.b.a ##37 ENSGT00940000153321.b.b.l.b.b.b.b.b.b ##37 ENSGT00940000153321.b.b.l.b.a.b ##37 ENSGT00940000153321.b.b.l.b.a.a.a.a ##37 ENSGT00940000153321.b.b.l.b.a.a.a.b ##37 ENSGT00940000153424.a.b ENSGT00390000001195.a ENSGT00940000156859 ENSGT00490000043385 ENSGT00950000183043.a.b.b.a.a.a.b ##18 ENSGT00950000183043.a.b.b.a.b.u.b ##18 ENSGT00940000164141 ENSGT00530000063675.b ENSGT00390000002445 ENSGT00940000157707 Cricetinae ANCESTRAL SPECIES 20 ENSGT00510000048363 #23 ENSGT00940000155950 #24 ENSGT00520000055591.b #25 ENSGT00670000098074 #26 ENSGT00940000160237 #27 ENSGT00940000160266 #28 ENSGT00940000161328 #29 ENSGT00940000159011 #30 ENSGT00390000016390 #31 ENSGT00940000155211 #32 ENSGT00390000015513.a.a.a #33 ENSGT00390000015513.a.a.b #34 ENSGT00940000153321.b.b.l.b.b.a.a.b #37 ENSGT00940000153321.b.b.l.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.b ##37 ENSGT00940000153321.b.b.l.b.b.b.a.b ##37 ENSGT00940000153321.b.b.l.b.b.b.b.a ##37 ENSGT00940000153321.b.b.l.b.b.b.b.b.b ##37 ENSGT00940000153321.b.b.l.b.a.b ##37 ENSGT00940000153321.b.b.l.b.a.a.a.a ##37 ENSGT00940000153321.b.b.l.b.a.a.a.b ##37 ENSGT00940000153424.a.b ENSGT00390000001195.a ENSGT00940000156859 ENSGT00490000043385 ENSGT00950000183043.a.b.b.a.a.a.b ##18 ENSGT00950000183043.a.b.b.a.b.u.b ##18 ENSGT00940000164141 ENSGT00530000063675.b ENSGT00390000002445 ENSGT00940000157707 Chinese hamster chok1gshd MODERN SPECIES 317 ENSCGRG00001002667 Cdc14b (ENSCGRG00001019066) #24 Habp4 (ENSCGRG00001025040) #25 Zfp367 (ENSCGRG00001022531) #26 Slc35d2 (ENSCGRG00001020192) #27 Hsd17b3 (ENSCGRG00001009870) #28 ENSCGRG00001022738 #29 ENSCGRG00001008618 Ptch1 (ENSCGRG00001010176) #30 Fancc (ENSCGRG00001013491) #31 Aopep (ENSCGRG00001012713) #32 Fbp1 (ENSCGRG00001009150) #33 Fbp2 (ENSCGRG00001022515) #34 Cts8 (ENSCGRG00001013704) ##37 Cts6 (ENSCGRG00001022925) ##37 Ctsq (ENSCGRG00001002399) ##37 Ctsj (ENSCGRG00001024764) ##37 ENSCGRG00001015895 ##37 ENSCGRG00001024602 ##37 4930486L24Rik (ENSCGRG00001023066) ##37 ENSCGRG00001019274 ##37 ENSCGRG00001014152 ##37 BC051665 (ENSCGRG00001008665) ##37 Dapk1 (ENSCGRG00001000497) Gas1 (ENSCGRG00001010171) Tut7 (ENSCGRG00001020605) ENSCGRG00001007037 1700014D04Rik (ENSCGRG00001022165) ##18 Spata31d1d (ENSCGRG00001011836) ##18 ENSCGRG00001001460 Golm1 (ENSCGRG00001021525) Cricetidae_B ANCESTRAL SPECIES 22 ENSGT00520000055591.b #25 ENSGT00670000098074 #26 ENSGT00940000160237 #27 ENSGT00940000160266 #28 ENSGT00940000161328 #29 ENSGT00940000159011 #30 ENSGT00390000016390 #31 ENSGT00940000155211 #32 ENSGT00390000015513.a.a.a #33 ENSGT00390000015513.a.a.b #34 ENSGT00940000153321.b.b.l.b.b.a.b #36 ENSGT00940000153321.b.b.l.b.b.a.a.b #37 ENSGT00940000153321.b.b.l.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.b ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.b ##37 ENSGT00940000153321.b.b.l.b.b.b.b.a ##37 ENSGT00940000153321.b.b.l.b.b.b.b.b.a ##37 ENSGT00940000153321.b.b.l.b.a.b ##37 ENSGT00940000153321.b.b.l.b.a.a.a.a ##37 ENSGT00940000153321.b.b.l.b.a.a.a.b ##37 ENSGT00940000153424.a.b ENSGT00390000001195.a ENSGT00940000156859 ENSGT00490000043385 ENSGT00950000183043.a.b.b.a.a.a.b ##18 ENSGT00950000183043.a.b.b.a.b.u.a.b ##18 ENSGT00940000164141 ENSGT00530000063675.b ENSGT00390000002445 ENSGT00940000157707 Northern American deer mouse DUPLICATION Northern American deer mouse MODERN SPECIES 18 Zfp367 (ENSPEMG00000013770) #26 Slc35d2 (ENSPEMG00000021173) #27 Hsd17b3 (ENSPEMG00000021000) #28 ENSPEMG00000006631 #29 Ptch1 (ENSPEMG00000016117) #30 Fancc (ENSPEMG00000022299) #31 Aopep (ENSPEMG00000011169) #32 Fbp1 (ENSPEMG00000020415) #33 Fbp2 (ENSPEMG00000003200) #34 ENSPEMG00000020678 #36 ENSPEMG00000030384 #37 ENSPEMG00000027810 #37 Cts8 (ENSPEMG00000021957) ##37 Cts6 (ENSPEMG00000016021) ##37 Ctsr (ENSPEMG00000001393) ##37 ENSPEMG00000029752 ##37 ENSPEMG00000026728 ##37 Ctsj (ENSPEMG00000015113) ##37 ENSPEMG00000031098 ENSPEMG00000020375 ENSPEMG00000026470 ENSPEMG00000030527 ##37 ENSPEMG00000026019 ##37 ENSPEMG00000028441 ##37 ENSPEMG00000022155 ##37 4930486L24Rik (ENSPEMG00000016874) ##37 Ctsll3 (ENSPEMG00000029464) ##37 BC051665 (ENSPEMG00000025235) ##37 Dapk1 (ENSPEMG00000022627) Gas1 (ENSPEMG00000007789) Tut7 (ENSPEMG00000014030) Northern American deer mouse MODERN SPECIES 18 Slc35d2 (ENSPEMG00000021173) #27 Hsd17b3 (ENSPEMG00000021000) #28 ENSPEMG00000006631 #29 Ptch1 (ENSPEMG00000016117) #30 Fancc (ENSPEMG00000022299) #31 Aopep (ENSPEMG00000011169) #32 Fbp1 (ENSPEMG00000020415) #33 Fbp2 (ENSPEMG00000003200) #34 ENSPEMG00000020678 #36 ENSPEMG00000030384 #37 ENSPEMG00000027810 #37 Cts8 (ENSPEMG00000021957) ##37 Cts6 (ENSPEMG00000016021) ##37 Ctsr (ENSPEMG00000001393) ##37 ENSPEMG00000029752 ##37 ENSPEMG00000026728 ##37 Ctsj (ENSPEMG00000015113) ##37 ENSPEMG00000031098 ENSPEMG00000020375 ENSPEMG00000026470 ENSPEMG00000030527 ##37 ENSPEMG00000026019 ##37 ENSPEMG00000028441 ##37 ENSPEMG00000022155 ##37 4930486L24Rik (ENSPEMG00000016874) ##37 Ctsll3 (ENSPEMG00000029464) ##37 BC051665 (ENSPEMG00000025235) ##37 Dapk1 (ENSPEMG00000022627) Gas1 (ENSPEMG00000007789) Tut7 (ENSPEMG00000014030) ENSPEMG00000029941 Prairie vole DUPLICATION Prairie vole DUPLICATION Prairie vole MODERN SPECIES 3 Ptch1 (ENSMOCG00000022943) #30 Fancc (ENSMOCG00000001776) #31 Aopep (ENSMOCG00000003056) #32 Fbp1 (ENSMOCG00000014907) #33 Fbp2 (ENSMOCG00000017815) #34 ENSMOCG00000010780 #36 Cts7 (ENSMOCG00000001845) #37 Cts8 (ENSMOCG00000005191) ##37 ENSMOCG00000020961 ##37 ENSMOCG00000013109 ##37 ENSMOCG00000000781 ##37 Ctsj (ENSMOCG00000013146) ##37 4930486L24Rik (ENSMOCG00000005874) ##37 ENSMOCG00000019948 ##37 ENSMOCG00000012620 ##37 Dapk1 (ENSMOCG00000016789) Gas1 (ENSMOCG00000002738) ENSMOCG00000022892 ENSMOCG00000007812 ENSMOCG00000000209 ENSMOCG00000000876 ##18 4921517D22Rik (ENSMOCG00000022999) ENSMOCG00000019507 Naa35 (ENSMOCG00000013999) Agtpbp1 (ENSMOCG00000014650) Prairie vole MODERN SPECIES 3 Ptch1 (ENSMOCG00000022943) #30 Fancc (ENSMOCG00000001776) #31 Aopep (ENSMOCG00000003056) #32 Fbp1 (ENSMOCG00000014907) #33 Fbp2 (ENSMOCG00000017815) #34 ENSMOCG00000010780 #36 Cts7 (ENSMOCG00000001845) #37 Cts8 (ENSMOCG00000005191) ##37 ENSMOCG00000020961 ##37 ENSMOCG00000013109 ##37 ENSMOCG00000000781 ##37 Ctsj (ENSMOCG00000013146) ##37 4930486L24Rik (ENSMOCG00000005874) ##37 ENSMOCG00000019948 ##37 ENSMOCG00000012620 ##37 Dapk1 (ENSMOCG00000016789) Gas1 (ENSMOCG00000002738) ENSMOCG00000022892 ENSMOCG00000007812 ENSMOCG00000000209 ENSMOCG00000000876 ##18 4921517D22Rik (ENSMOCG00000022999) ENSMOCG00000019507 Naa35 (ENSMOCG00000013999) Agtpbp1 (ENSMOCG00000014650) Ntrk2 (ENSMOCG00000015461) Prairie vole MODERN SPECIES 3 Ptch1 (ENSMOCG00000022943) #30 Fancc (ENSMOCG00000001776) #31 Aopep (ENSMOCG00000003056) #32 Fbp1 (ENSMOCG00000014907) #33 Fbp2 (ENSMOCG00000017815) #34 ENSMOCG00000010780 #36 Cts7 (ENSMOCG00000001845) #37 Cts8 (ENSMOCG00000005191) ##37 ENSMOCG00000020961 ##37 ENSMOCG00000013109 ##37 ENSMOCG00000000781 ##37 Ctsj (ENSMOCG00000013146) ##37 4930486L24Rik (ENSMOCG00000005874) ##37 ENSMOCG00000019948 ##37 ENSMOCG00000012620 ##37 Dapk1 (ENSMOCG00000016789) Gas1 (ENSMOCG00000002738) ENSMOCG00000022892 ENSMOCG00000007812 ENSMOCG00000000209 ENSMOCG00000000876 ##18 4921517D22Rik (ENSMOCG00000022999) ENSMOCG00000019507 Naa35 (ENSMOCG00000013999) Murinae DUPLICATION Murinae ANCESTRAL SPECIES 21 ENSGT00520000055591.b #25 ENSGT00670000098074 #26 ENSGT00940000160237 #27 ENSGT00940000160266 #28 ENSGT00940000161328 #29 ENSGT00940000159011 #30 ENSGT00390000016390 #31 ENSGT00940000155211 #32 ENSGT00390000015513.a.a.a #33 ENSGT00390000015513.a.a.b #34 ENSGT00940000153321.b.b.l.b.b.a.b #36 ENSGT00940000153321.b.b.l.b.b.a.a.b.b #37 ENSGT00940000153321.b.b.l.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.b ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.b.e ##37 ENSGT00940000153321.b.b.l.b.b.b.b.a ##37 ENSGT00390000010930 ENSGT00940000153321.b.b.l.b.b.b.b.b ##37 ENSGT00940000153321.b.b.l.b.a.b ##37 ENSGT00940000153321.b.b.l.b.a.a.a.a ##37 ENSGT00940000153321.b.b.l.b.a.a.a.b ##37 ENSGT00940000153424.a.b ENSGT00390000001195.a ENSGT00940000156859 ENSGT00490000043385 ENSGT00950000183043.a.b.b.a.a.a.b ##18 ENSGT00950000183043.a.b.b.a.b.u.b ##18 ENSGT00950000183043.a.b.b.a.b.u.a.b.a ##18 ENSGT00950000183043.a.b.b.a.b.u.a.b.b ##18 ENSGT00940000164141 Mus ANCESTRAL SPECIES 18 ENSGT00670000098074 #26 ENSGT00940000160237 #27 ENSGT00940000160266 #28 ENSGT00940000161328 #29 ENSGT00940000159011 #30 ENSGT00390000016390 #31 ENSGT00940000155211 #32 ENSGT00390000015513.a.a.a #33 ENSGT00390000015513.a.a.b #34 ENSGT00940000153321.b.b.l.b.b.a.b.b #35 ENSGT00940000153321.b.b.l.b.b.a.b.a #36 ENSGT00940000153321.b.b.l.b.b.a.a.b.b #37 ENSGT00940000153321.b.b.l.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.b ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.b.e ##37 ENSGT00940000153321.b.b.l.b.b.b.b.a ##37 ENSGT00390000010930.a ENSGT00940000153321.b.b.l.b.b.b.b.b ##37 ENSGT00940000153321.b.b.l.b.a.b ##37 ENSGT00940000153321.b.b.l.b.a.a.a.a ##37 ENSGT00940000153321.b.b.l.b.a.a.a.b ##37 ENSGT00940000153424.a.b ENSGT00800000125290 ENSGT00390000001195.a ENSGT00940000156859 ENSGT00490000043385 ENSGT00950000183043.a.b.b.a.a.a.b ##18 ENSGT00950000183043.a.b.b.a.b.u.b ##18 ENSGT00950000183043.a.b.b.a.b.u.a.b.a ##18 ENSGT00950000183043.a.b.b.a.b.u.a.b.b ##18 Mus_A ANCESTRAL SPECIES 14 ENSGT00670000098074 #26 ENSGT00940000160237 #27 ENSGT00940000160266 #28 ENSGT00940000161328 #29 ENSGT00940000159011 #30 ENSGT00390000016390 #31 ENSGT00940000155211 #32 ENSGT00390000015513.a.a.a #33 ENSGT00390000015513.a.a.b #34 ENSGT00940000153321.b.b.l.b.b.a.b.b #35 ENSGT00940000153321.b.b.l.b.b.a.b.a #36 ENSGT00940000153321.b.b.l.b.b.a.a.b.b #37 ENSGT00940000153321.b.b.l.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.b ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.b.e ##37 ENSGT00940000153321.b.b.l.b.b.b.b.a ##37 ENSGT00390000010930.a ENSGT00390000010930.b ENSGT00940000153321.b.b.l.b.b.b.b.b ##37 ENSGT00940000153321.b.b.l.b.a.b ##37 ENSGT00940000153321.b.b.l.b.a.a.a.a ##37 ENSGT00940000153321.b.b.l.b.a.a.a.b ##37 ENSGT00940000153424.a.b ENSGT00800000125290 ENSGT00390000001195.a ENSGT00940000156859 ENSGT00490000043385 ENSGT00950000183043.a.b.b.a.a.a.b ##18 ENSGT00950000183043.a.b.b.a.b.u.b ##18 ENSGT00950000183043.a.b.b.a.b.u.a.b.a ##18 Mus_B ANCESTRAL SPECIES 13 ENSGT00670000098074 #26 ENSGT00940000160237 #27 ENSGT00940000160266 #28 ENSGT00940000161328 #29 ENSGT00940000159011 #30 ENSGT00390000016390 #31 ENSGT00940000155211 #32 ENSGT00390000015513.a.a.a #33 ENSGT00390000015513.a.a.b #34 ENSGT00940000153321.b.b.l.b.b.a.b.b #35 ENSGT00940000153321.b.b.l.b.b.a.b.a #36 ENSGT00940000153321.b.b.l.b.b.a.a.b.b #37 ENSGT00940000153321.b.b.l.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.b ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.b.e ##37 ENSGT00940000153321.b.b.l.b.b.b.b.a ##37 ENSGT00390000010930.a ENSGT00940000153321.b.b.l.b.b.b.b.b.d ##37 ENSGT00390000010930.b ENSGT00940000153321.b.b.l.b.b.b.b.b.c ##37 ENSGT00940000153321.b.b.l.b.a.b ##37 ENSGT00940000153321.b.b.l.b.a.a.a.a ##37 ENSGT00940000153321.b.b.l.b.a.a.a.b ##37 ENSGT00940000153424.a.b ENSGT00800000125290 ENSGT00390000001195.a ENSGT00940000156859 ENSGT00490000043385 ENSGT00950000183043.a.b.b.a.a.a.b ##18 ENSGT00950000183043.a.b.b.a.b.u.b ##18 Mus_C ANCESTRAL SPECIES 10 ENSGT00670000098074 #26 ENSGT00940000160237 #27 ENSGT00940000160266 #28 ENSGT00940000161328 #29 ENSGT00940000159011 #30 ENSGT00390000016390 #31 ENSGT00940000155211 #32 ENSGT00390000015513.a.a.a #33 ENSGT00390000015513.a.a.b #34 ENSGT00940000153321.b.b.l.b.b.a.b.b #35 ENSGT00940000153321.b.b.l.b.b.a.b.a #36 ENSGT00940000153321.b.b.l.b.b.a.a.b.b #37 ENSGT00940000153321.b.b.l.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.b ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.b.e ##37 ENSGT00940000153321.b.b.l.b.b.b.b.a ##37 ENSGT00390000010930.a ENSGT00940000153321.b.b.l.b.b.b.b.b.d ##37 ENSGT00390000010930.b ENSGT00940000153321.b.b.l.b.b.b.b.b.c ##37 ENSGT00940000153321.b.b.l.b.a.b ##37 ENSGT00940000153321.b.b.l.b.a.a.a.a ##37 ENSGT00940000153321.b.b.l.b.a.a.a.b ##37 ENSGT00940000153424.a.b ENSGT00800000125290 ENSGT00390000001195.a ENSGT00940000156859 ENSGT00490000043385 ENSGT00950000183043.a.b.b.a.a.a.b ##18 ENSGT00950000183043.a.b.b.a.b.u.b ##18 Steppe mouse MODERN SPECIES 1371 Ctsq (ENSMSIG00000005475) ##37 spretus MODERN SPECIES 4 Zfp367 (MGP_SPRETEiJ_G0019518) #26 Slc35d2 (MGP_SPRETEiJ_G0019517) #27 Hsd17b3 (MGP_SPRETEiJ_G0019516) #28 MGP_SPRETEiJ_G0019515 #29 Ptch1 (MGP_SPRETEiJ_G0019514) #30 Fancc (MGP_SPRETEiJ_G0019513) #31 Aopep (MGP_SPRETEiJ_G0019512) #32 Fbp1 (MGP_SPRETEiJ_G0019511) #33 Fbp2 (MGP_SPRETEiJ_G0019510) #34 MGP_SPRETEiJ_G0019509 #35 Ctsm (MGP_SPRETEiJ_G0019508) #36 Cts7 (MGP_SPRETEiJ_G0019507) #37 Cts8 (MGP_SPRETEiJ_G0019506) ##37 Cts6 (MGP_SPRETEiJ_G0019505) ##37 Ctsr (MGP_SPRETEiJ_G0019504) ##37 Ctsq (MGP_SPRETEiJ_G0019503) ##37 Ctsj (MGP_SPRETEiJ_G0019502) ##37 MGP_SPRETEiJ_G0019501 Ctla2a (MGP_SPRETEiJ_G0019500) ##37 Tpbpb (MGP_SPRETEiJ_G0019499) Ctla2b (MGP_SPRETEiJ_G0019498) ##37 4930486L24Rik (MGP_SPRETEiJ_G0019497) ##37 Ctsll3 (MGP_SPRETEiJ_G0019496) ##37 BC051665 (MGP_SPRETEiJ_G0019495) ##37 Dapk1 (MGP_SPRETEiJ_G0019494) MGP_SPRETEiJ_G0019493 Gas1 (MGP_SPRETEiJ_G0019492) Tut7 (MGP_SPRETEiJ_G0019491) MGP_SPRETEiJ_G0019490 1700014D04Rik (MGP_SPRETEiJ_G0019489) ##18 Spata31d1d (MGP_SPRETEiJ_G0019488) ##18 Mouse MODERN SPECIES 4 Gm5141 (ENSMUSG00000091183) Platr25 (ENSMUSG00000074863) 6720489N17Rik (ENSMUSG00000072066) Zfp934 (ENSMUSG00000074865) Gm49359 (ENSMUSG00000055228) Zfp935 (ENSMUSG00000113450) Gm3604 (ENSMUSG00000094942) Zfp808 (ENSMUSG00000074867) Cts3 (ENSMUSG00000074870) #35 Gm49352 (ENSMUSG00000114904) Ctsm (ENSMUSG00000074871) #36 Cts7 (ENSMUSG00000021440) #37 Cts8 (ENSMUSG00000057446) ##37 Cts6 (ENSMUSG00000021441) ##37 Ctsr (ENSMUSG00000055679) ##37 Ctsq (ENSMUSG00000021439) ##37 Ctsj (ENSMUSG00000055298) ##37 Tpbpa (ENSMUSG00000033834) Ctla2a (ENSMUSG00000044258) ##37 Tpbpb (ENSMUSG00000062705) Gm49391 (ENSMUSG00000114432) Ctla2b (ENSMUSG00000074874) ##37 4930486L24Rik (ENSMUSG00000050345) ##37 Ctsll3 (ENSMUSG00000056728) ##37 BC051665 (ENSMUSG00000042243) ##37 Dapk1 (ENSMUSG00000021559) Gas1 (ENSMUSG00000052957) Tut7 (ENSMUSG00000035248) Isca1 (ENSMUSG00000044792) 1700014D04Rik (ENSMUSG00000051054) ##18 Spata31d1d (ENSMUSG00000043986) ##18 Rat MODERN SPECIES 8 LOC102549249 (ENSRNOG00000063621) ENSRNOG00000064579 LOC102549249 (ENSRNOG00000067517) AABR07028805.1 (ENSRNOG00000040024) LOC102555902 (ENSRNOG00000068265) ENSRNOG00000063185 LOC108348224 (ENSRNOG00000062387) Ctsm (ENSRNOG00000065730) #36 RGD1564657 (ENSRNOG00000050474) ##37 Cts7 (ENSRNOG00000033540) #37 Cts8l1 (ENSRNOG00000065532) ##37 Cts8 (ENSRNOG00000040000) ##37 Ctsr (ENSRNOG00000017888) ##37 MGC114246 (ENSRNOG00000039990) ##37 AABR07043347.1 (ENSRNOG00000051410) Ctsq (ENSRNOG00000048693) ##37 LOC100364523 (ENSRNOG00000056519) ##37 Ctsql2 (ENSRNOG00000017946) ##37 Ctsj (ENSRNOG00000046476) ##37 RGD1564827 (ENSRNOG00000069712) #36 Tpbpa (ENSRNOG00000039975) Ctla2a (ENSRNOG00000039971) ##37 Testin (ENSRNOG00000018028) ##37 Ctsll3 (ENSRNOG00000069877) ##37 RGD1308751 (ENSRNOG00000039954) ##37 Dapk1 (ENSRNOG00000018198) Tut7 (ENSRNOG00000016629) Isca1 (ENSRNOG00000018343) AABR07026929.1 (ENSRNOG00000042026) ##18 Spata31d1 (ENSRNOG00000027014) ##18 Spata31d1b (ENSRNOG00000069288) ##18 Murinae ANCESTRAL SPECIES ENSGT00940000153321.b.b.l.b.b.b.a.b.f ##37 Rat DUPLICATION Rat MODERN SPECIES 8 Spata31d3 (ENSRNOG00000056413) ##18 Spata31d1b (ENSRNOG00000069288) ##18 Spata31d1 (ENSRNOG00000027014) ##18 AABR07026929.1 (ENSRNOG00000042026) ##18 Isca1 (ENSRNOG00000018343) Tut7 (ENSRNOG00000016629) Dapk1 (ENSRNOG00000018198) RGD1308751 (ENSRNOG00000039954) ##37 Ctsll3 (ENSRNOG00000069877) ##37 Testin (ENSRNOG00000018028) ##37 Ctla2a (ENSRNOG00000039971) ##37 Tpbpa (ENSRNOG00000039975) RGD1564827 (ENSRNOG00000069712) #36 Ctsj (ENSRNOG00000046476) ##37 Ctsql2 (ENSRNOG00000017946) ##37 LOC100364523 (ENSRNOG00000056519) ##37 Ctsq (ENSRNOG00000048693) ##37 AABR07043347.1 (ENSRNOG00000051410) MGC114246 (ENSRNOG00000039990) ##37 Ctsr (ENSRNOG00000017888) ##37 Cts8 (ENSRNOG00000040000) ##37 Cts8l1 (ENSRNOG00000065532) ##37 Cts7 (ENSRNOG00000033540) #37 RGD1564657 (ENSRNOG00000050474) ##37 Ctsm (ENSRNOG00000065730) #36 LOC108348224 (ENSRNOG00000062387) ENSRNOG00000063185 LOC102555902 (ENSRNOG00000068265) AABR07028805.1 (ENSRNOG00000040024) LOC102549249 (ENSRNOG00000067517) ENSRNOG00000064579 Rat MODERN SPECIES 8 LOC102549249 (ENSRNOG00000067517) AABR07028805.1 (ENSRNOG00000040024) LOC102555902 (ENSRNOG00000068265) ENSRNOG00000063185 LOC108348224 (ENSRNOG00000062387) Ctsm (ENSRNOG00000065730) #36 RGD1564657 (ENSRNOG00000050474) ##37 Cts7 (ENSRNOG00000033540) #37 Cts8l1 (ENSRNOG00000065532) ##37 Cts8 (ENSRNOG00000040000) ##37 Ctsr (ENSRNOG00000017888) ##37 MGC114246 (ENSRNOG00000039990) ##37 AABR07043347.1 (ENSRNOG00000051410) Ctsq (ENSRNOG00000048693) ##37 LOC100364523 (ENSRNOG00000056519) ##37 Ctsql2 (ENSRNOG00000017946) ##37 Ctsj (ENSRNOG00000046476) ##37 RGD1564827 (ENSRNOG00000069712) #36 Tpbpa (ENSRNOG00000039975) Ctla2a (ENSRNOG00000039971) ##37 Testin (ENSRNOG00000018028) ##37 Ctsll3 (ENSRNOG00000069877) ##37 RGD1308751 (ENSRNOG00000039954) ##37 Dapk1 (ENSRNOG00000018198) Tut7 (ENSRNOG00000016629) Isca1 (ENSRNOG00000018343) AABR07026929.1 (ENSRNOG00000042026) ##18 Spata31d1 (ENSRNOG00000027014) ##18 Spata31d1b (ENSRNOG00000069288) ##18 Spata31d3 (ENSRNOG00000056413) ##18 LOC100912252 (ENSRNOG00000042206) Muroidea_A DUPLICATION Muroidea_A ANCESTRAL SPECIES 14 ENSGT00670000098074 #26 ENSGT00940000160237 #27 ENSGT00940000160266 #28 ENSGT00940000161328 #29 ENSGT00940000159011 #30 ENSGT00390000016390 #31 ENSGT00940000155211 #32 ENSGT00390000015513.a.a.a #33 ENSGT00390000015513.a.a.b #34 ENSGT00940000153321.b.b.l.b.b.a.b #36 ENSGT00940000153321.b.b.l.b.b.a.a.b #37 ENSGT00940000153321.b.b.l.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.b ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.b ##37 ENSGT00940000153321.b.b.l.b.b.b.b.a ##37 ENSGT00940000153321.b.b.l.b.b.b.b.b ##37 ENSGT00940000153321.b.b.l.b.a.b ##37 ENSGT00940000153321.b.b.l.b.a.a.a.a ##37 ENSGT00940000153321.b.b.l.b.a.a.a.b ##37 ENSGT00940000153424.a.b ENSGT00390000001195.a ENSGT00940000156859 ENSGT00490000043385 ENSGT00950000183043.a.b.b.a.a.a.b ##18 ENSGT00950000183043.a.b.b.a.b.u.b ##18 ENSGT00940000164141 ENSGT00530000063675.b ENSGT00390000002445 ENSGT00940000157707 ENSGT00940000155181 Cricetidae ANCESTRAL SPECIES 22 ENSGT00670000098074 #26 ENSGT00940000160237 #27 ENSGT00940000160266 #28 ENSGT00940000161328 #29 ENSGT00940000159011 #30 ENSGT00390000016390 #31 ENSGT00940000155211 #32 ENSGT00390000015513.a.a.a #33 ENSGT00390000015513.a.a.b #34 ENSGT00940000153321.b.b.l.b.b.a.b #36 ENSGT00940000153321.b.b.l.b.b.a.a.b #37 ENSGT00940000153321.b.b.l.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.b ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.b ##37 ENSGT00940000153321.b.b.l.b.b.b.b.a ##37 ENSGT00940000153321.b.b.l.b.b.b.b.b.b ##37 ENSGT00940000153321.b.b.l.b.a.b ##37 ENSGT00940000153321.b.b.l.b.a.a.a.a ##37 ENSGT00940000153321.b.b.l.b.a.a.a.b ##37 ENSGT00940000153424.a.b ENSGT00390000001195.a ENSGT00940000156859 ENSGT00490000043385 ENSGT00950000183043.a.b.b.a.a.a.b ##18 ENSGT00950000183043.a.b.b.a.b.u.b ##18 ENSGT00940000164141 ENSGT00530000063675.b ENSGT00390000002445 ENSGT00940000157707 ENSGT00940000155181 Cricetinae ANCESTRAL SPECIES 20 ENSGT00940000155950 #24 ENSGT00520000055591.b #25 ENSGT00670000098074 #26 ENSGT00940000160237 #27 ENSGT00940000160266 #28 ENSGT00940000161328 #29 ENSGT00940000159011 #30 ENSGT00390000016390 #31 ENSGT00940000155211 #32 ENSGT00390000015513.a.a.a #33 ENSGT00390000015513.a.a.b #34 ENSGT00940000153321.b.b.l.b.b.a.a.b #37 ENSGT00940000153321.b.b.l.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.b ##37 ENSGT00940000153321.b.b.l.b.b.b.a.b ##37 ENSGT00940000153321.b.b.l.b.b.b.b.a ##37 ENSGT00940000153321.b.b.l.b.b.b.b.b.b ##37 ENSGT00940000153321.b.b.l.b.a.b ##37 ENSGT00940000153321.b.b.l.b.a.a.a.a ##37 ENSGT00940000153321.b.b.l.b.a.a.a.b ##37 ENSGT00940000153424.a.b ENSGT00390000001195.a ENSGT00940000156859 ENSGT00490000043385 ENSGT00950000183043.a.b.b.a.a.a.b ##18 ENSGT00950000183043.a.b.b.a.b.u.b ##18 ENSGT00940000164141 ENSGT00530000063675.b ENSGT00390000002445 ENSGT00940000157707 ENSGT00940000155181 Golden Hamster MODERN SPECIES 699 Cdc14b (ENSMAUG00000002176) #24 Habp4 (ENSMAUG00000020977) #25 Zfp367 (ENSMAUG00000019699) #26 Slc35d2 (ENSMAUG00000016504) #27 Hsd17b3 (ENSMAUG00000018759) #28 Ercc6l2 (ENSMAUG00000004820) #29 Ptch1 (ENSMAUG00000014816) #30 Fancc (ENSMAUG00000012407) #31 Aopep (ENSMAUG00000003279) #32 Fbp1 (ENSMAUG00000015819) #33 Fbp2 (ENSMAUG00000017596) #34 ENSMAUG00000016362 #37 Cts8 (ENSMAUG00000018878) ##37 Ctsr (ENSMAUG00000014961) ##37 Cts6 (ENSMAUG00000016662) ##37 Ctsj (ENSMAUG00000008852) ##37 Ctsll3 (ENSMAUG00000014374) ##37 BC051665 (ENSMAUG00000012142) ##37 Dapk1 (ENSMAUG00000000180) Gas1 (ENSMAUG00000019435) Tut7 (ENSMAUG00000006963) ENSMAUG00000000645 1700014D04Rik (ENSMAUG00000020029) ##18 ENSMAUG00000012538 Naa35 (ENSMAUG00000006704) ENSMAUG00000002599 Ntrk2 (ENSMAUG00000014898) Slc28a3 (ENSMAUG00000007466) ENSMAUG00000015268 2210016F16Rik (ENSMAUG00000001833) Kif27 (ENSMAUG00000007799) Chinese hamster chok1gshd MODERN SPECIES 317 Cdc14b (ENSCGRG00001019066) #24 Habp4 (ENSCGRG00001025040) #25 Zfp367 (ENSCGRG00001022531) #26 Slc35d2 (ENSCGRG00001020192) #27 Hsd17b3 (ENSCGRG00001009870) #28 ENSCGRG00001022738 #29 ENSCGRG00001008618 Ptch1 (ENSCGRG00001010176) #30 Fancc (ENSCGRG00001013491) #31 Aopep (ENSCGRG00001012713) #32 Fbp1 (ENSCGRG00001009150) #33 Fbp2 (ENSCGRG00001022515) #34 Cts8 (ENSCGRG00001013704) ##37 Cts6 (ENSCGRG00001022925) ##37 Ctsq (ENSCGRG00001002399) ##37 Ctsj (ENSCGRG00001024764) ##37 ENSCGRG00001015895 ##37 ENSCGRG00001024602 ##37 4930486L24Rik (ENSCGRG00001023066) ##37 ENSCGRG00001019274 ##37 ENSCGRG00001014152 ##37 BC051665 (ENSCGRG00001008665) ##37 Dapk1 (ENSCGRG00001000497) Gas1 (ENSCGRG00001010171) Tut7 (ENSCGRG00001020605) ENSCGRG00001007037 1700014D04Rik (ENSCGRG00001022165) ##18 Spata31d1d (ENSCGRG00001011836) ##18 ENSCGRG00001001460 Golm1 (ENSCGRG00001021525) ENSCGRG00001022085 Cricetidae_B ANCESTRAL SPECIES 22 ENSGT00670000098074 #26 ENSGT00940000160237 #27 ENSGT00940000160266 #28 ENSGT00940000161328 #29 ENSGT00940000159011 #30 ENSGT00390000016390 #31 ENSGT00940000155211 #32 ENSGT00390000015513.a.a.a #33 ENSGT00390000015513.a.a.b #34 ENSGT00940000153321.b.b.l.b.b.a.b #36 ENSGT00940000153321.b.b.l.b.b.a.a.b #37 ENSGT00940000153321.b.b.l.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.b ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.b ##37 ENSGT00940000153321.b.b.l.b.b.b.b.a ##37 ENSGT00940000153321.b.b.l.b.b.b.b.b.a ##37 ENSGT00940000153321.b.b.l.b.a.b ##37 ENSGT00940000153321.b.b.l.b.a.a.a.a ##37 ENSGT00940000153321.b.b.l.b.a.a.a.b ##37 ENSGT00940000153424.a.b ENSGT00390000001195.a ENSGT00940000156859 ENSGT00490000043385 ENSGT00950000183043.a.b.b.a.a.a.b ##18 ENSGT00950000183043.a.b.b.a.b.u.a.b ##18 ENSGT00940000164141 ENSGT00530000063675.b ENSGT00390000002445 ENSGT00940000157707 ENSGT00940000155181 Northern American deer mouse MODERN SPECIES 18 Hsd17b3 (ENSPEMG00000021000) #28 ENSPEMG00000006631 #29 Ptch1 (ENSPEMG00000016117) #30 Fancc (ENSPEMG00000022299) #31 Aopep (ENSPEMG00000011169) #32 Fbp1 (ENSPEMG00000020415) #33 Fbp2 (ENSPEMG00000003200) #34 ENSPEMG00000020678 #36 ENSPEMG00000030384 #37 ENSPEMG00000027810 #37 Cts8 (ENSPEMG00000021957) ##37 Cts6 (ENSPEMG00000016021) ##37 Ctsr (ENSPEMG00000001393) ##37 ENSPEMG00000029752 ##37 ENSPEMG00000026728 ##37 Ctsj (ENSPEMG00000015113) ##37 ENSPEMG00000031098 ENSPEMG00000020375 ENSPEMG00000026470 ENSPEMG00000030527 ##37 ENSPEMG00000026019 ##37 ENSPEMG00000028441 ##37 ENSPEMG00000022155 ##37 4930486L24Rik (ENSPEMG00000016874) ##37 Ctsll3 (ENSPEMG00000029464) ##37 BC051665 (ENSPEMG00000025235) ##37 Dapk1 (ENSPEMG00000022627) Gas1 (ENSPEMG00000007789) Tut7 (ENSPEMG00000014030) ENSPEMG00000029941 ENSPEMG00000028848 ##18 Prairie vole MODERN SPECIES 3 Ptch1 (ENSMOCG00000022943) #30 Fancc (ENSMOCG00000001776) #31 Aopep (ENSMOCG00000003056) #32 Fbp1 (ENSMOCG00000014907) #33 Fbp2 (ENSMOCG00000017815) #34 ENSMOCG00000010780 #36 Cts7 (ENSMOCG00000001845) #37 Cts8 (ENSMOCG00000005191) ##37 ENSMOCG00000020961 ##37 ENSMOCG00000013109 ##37 ENSMOCG00000000781 ##37 Ctsj (ENSMOCG00000013146) ##37 4930486L24Rik (ENSMOCG00000005874) ##37 ENSMOCG00000019948 ##37 ENSMOCG00000012620 ##37 Dapk1 (ENSMOCG00000016789) Gas1 (ENSMOCG00000002738) ENSMOCG00000022892 ENSMOCG00000007812 ENSMOCG00000000209 ENSMOCG00000000876 ##18 4921517D22Rik (ENSMOCG00000022999) ENSMOCG00000019507 Naa35 (ENSMOCG00000013999) Agtpbp1 (ENSMOCG00000014650) Ntrk2 (ENSMOCG00000015461) Slc28a3 (ENSMOCG00000005269) Murinae ANCESTRAL SPECIES 21 ENSGT00670000098074 #26 ENSGT00940000160237 #27 ENSGT00940000160266 #28 ENSGT00940000161328 #29 ENSGT00940000159011 #30 ENSGT00390000016390 #31 ENSGT00940000155211 #32 ENSGT00390000015513.a.a.a #33 ENSGT00390000015513.a.a.b #34 ENSGT00940000153321.b.b.l.b.b.a.b #36 ENSGT00940000153321.b.b.l.b.b.a.a.b.b #37 ENSGT00940000153321.b.b.l.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.b ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.b.e ##37 ENSGT00940000153321.b.b.l.b.b.b.b.a ##37 ENSGT00390000010930 ENSGT00940000153321.b.b.l.b.b.b.b.b ##37 ENSGT00940000153321.b.b.l.b.a.b ##37 ENSGT00940000153321.b.b.l.b.a.a.a.a ##37 ENSGT00940000153321.b.b.l.b.a.a.a.b ##37 ENSGT00940000153424.a.b ENSGT00390000001195.a ENSGT00940000156859 ENSGT00490000043385 ENSGT00950000183043.a.b.b.a.a.a.b ##18 ENSGT00950000183043.a.b.b.a.b.u.b ##18 ENSGT00950000183043.a.b.b.a.b.u.a.b.a ##18 ENSGT00950000183043.a.b.b.a.b.u.a.b.b ##18 ENSGT00940000164141 ENSGT00530000063675.b Mus ANCESTRAL SPECIES 18 ENSGT00940000160237 #27 ENSGT00940000160266 #28 ENSGT00940000161328 #29 ENSGT00940000159011 #30 ENSGT00390000016390 #31 ENSGT00940000155211 #32 ENSGT00390000015513.a.a.a #33 ENSGT00390000015513.a.a.b #34 ENSGT00940000153321.b.b.l.b.b.a.b.b #35 ENSGT00940000153321.b.b.l.b.b.a.b.a #36 ENSGT00940000153321.b.b.l.b.b.a.a.b.b #37 ENSGT00940000153321.b.b.l.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.b ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.b.e ##37 ENSGT00940000153321.b.b.l.b.b.b.b.a ##37 ENSGT00390000010930.a ENSGT00940000153321.b.b.l.b.b.b.b.b ##37 ENSGT00940000153321.b.b.l.b.a.b ##37 ENSGT00940000153321.b.b.l.b.a.a.a.a ##37 ENSGT00940000153321.b.b.l.b.a.a.a.b ##37 ENSGT00940000153424.a.b ENSGT00800000125290 ENSGT00390000001195.a ENSGT00940000156859 ENSGT00490000043385 ENSGT00950000183043.a.b.b.a.a.a.b ##18 ENSGT00950000183043.a.b.b.a.b.u.b ##18 ENSGT00950000183043.a.b.b.a.b.u.a.b.a ##18 ENSGT00950000183043.a.b.b.a.b.u.a.b.b ##18 ENSGT00940000164141 Mus_A ANCESTRAL SPECIES 14 ENSGT00940000160237 #27 ENSGT00940000160266 #28 ENSGT00940000161328 #29 ENSGT00940000159011 #30 ENSGT00390000016390 #31 ENSGT00940000155211 #32 ENSGT00390000015513.a.a.a #33 ENSGT00390000015513.a.a.b #34 ENSGT00940000153321.b.b.l.b.b.a.b.b #35 ENSGT00940000153321.b.b.l.b.b.a.b.a #36 ENSGT00940000153321.b.b.l.b.b.a.a.b.b #37 ENSGT00940000153321.b.b.l.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.b ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.b.e ##37 ENSGT00940000153321.b.b.l.b.b.b.b.a ##37 ENSGT00390000010930.a ENSGT00390000010930.b ENSGT00940000153321.b.b.l.b.b.b.b.b ##37 ENSGT00940000153321.b.b.l.b.a.b ##37 ENSGT00940000153321.b.b.l.b.a.a.a.a ##37 ENSGT00940000153321.b.b.l.b.a.a.a.b ##37 ENSGT00940000153424.a.b ENSGT00800000125290 ENSGT00390000001195.a ENSGT00940000156859 ENSGT00490000043385 ENSGT00950000183043.a.b.b.a.a.a.b ##18 ENSGT00950000183043.a.b.b.a.b.u.b ##18 ENSGT00950000183043.a.b.b.a.b.u.a.b.a ##18 ENSGT00950000183043.a.b.b.a.b.u.a.b.b ##18 Mus_B ANCESTRAL SPECIES 13 ENSGT00940000160237 #27 ENSGT00940000160266 #28 ENSGT00940000161328 #29 ENSGT00940000159011 #30 ENSGT00390000016390 #31 ENSGT00940000155211 #32 ENSGT00390000015513.a.a.a #33 ENSGT00390000015513.a.a.b #34 ENSGT00940000153321.b.b.l.b.b.a.b.b #35 ENSGT00940000153321.b.b.l.b.b.a.b.a #36 ENSGT00940000153321.b.b.l.b.b.a.a.b.b #37 ENSGT00940000153321.b.b.l.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.b ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.b.e ##37 ENSGT00940000153321.b.b.l.b.b.b.b.a ##37 ENSGT00390000010930.a ENSGT00940000153321.b.b.l.b.b.b.b.b.d ##37 ENSGT00390000010930.b ENSGT00940000153321.b.b.l.b.b.b.b.b.c ##37 ENSGT00940000153321.b.b.l.b.a.b ##37 ENSGT00940000153321.b.b.l.b.a.a.a.a ##37 ENSGT00940000153321.b.b.l.b.a.a.a.b ##37 ENSGT00940000153424.a.b ENSGT00800000125290 ENSGT00390000001195.a ENSGT00940000156859 ENSGT00490000043385 ENSGT00950000183043.a.b.b.a.a.a.b ##18 ENSGT00950000183043.a.b.b.a.b.u.b ##18 ENSGT00950000183043.a.b.b.a.b.u.a.b.a ##18 Mouse MODERN SPECIES 4 Platr25 (ENSMUSG00000074863) 6720489N17Rik (ENSMUSG00000072066) Zfp934 (ENSMUSG00000074865) Gm49359 (ENSMUSG00000055228) Zfp935 (ENSMUSG00000113450) Gm3604 (ENSMUSG00000094942) Zfp808 (ENSMUSG00000074867) Cts3 (ENSMUSG00000074870) #35 Gm49352 (ENSMUSG00000114904) Ctsm (ENSMUSG00000074871) #36 Cts7 (ENSMUSG00000021440) #37 Cts8 (ENSMUSG00000057446) ##37 Cts6 (ENSMUSG00000021441) ##37 Ctsr (ENSMUSG00000055679) ##37 Ctsq (ENSMUSG00000021439) ##37 Ctsj (ENSMUSG00000055298) ##37 Tpbpa (ENSMUSG00000033834) Ctla2a (ENSMUSG00000044258) ##37 Tpbpb (ENSMUSG00000062705) Gm49391 (ENSMUSG00000114432) Ctla2b (ENSMUSG00000074874) ##37 4930486L24Rik (ENSMUSG00000050345) ##37 Ctsll3 (ENSMUSG00000056728) ##37 BC051665 (ENSMUSG00000042243) ##37 Dapk1 (ENSMUSG00000021559) Gas1 (ENSMUSG00000052957) Tut7 (ENSMUSG00000035248) Isca1 (ENSMUSG00000044792) 1700014D04Rik (ENSMUSG00000051054) ##18 Spata31d1d (ENSMUSG00000043986) ##18 Spata31d1b (ENSMUSG00000091311) ##18 Mus_C ANCESTRAL SPECIES 10 ENSGT00940000160237 #27 ENSGT00940000160266 #28 ENSGT00940000161328 #29 ENSGT00940000159011 #30 ENSGT00390000016390 #31 ENSGT00940000155211 #32 ENSGT00390000015513.a.a.a #33 ENSGT00390000015513.a.a.b #34 ENSGT00940000153321.b.b.l.b.b.a.b.b #35 ENSGT00940000153321.b.b.l.b.b.a.b.a #36 ENSGT00940000153321.b.b.l.b.b.a.a.b.b #37 ENSGT00940000153321.b.b.l.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.b ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.b.e ##37 ENSGT00940000153321.b.b.l.b.b.b.b.a ##37 ENSGT00390000010930.a ENSGT00940000153321.b.b.l.b.b.b.b.b.d ##37 ENSGT00390000010930.b ENSGT00940000153321.b.b.l.b.b.b.b.b.c ##37 ENSGT00940000153321.b.b.l.b.a.b ##37 ENSGT00940000153321.b.b.l.b.a.a.a.a ##37 ENSGT00940000153321.b.b.l.b.a.a.a.b ##37 ENSGT00940000153424.a.b ENSGT00800000125290 ENSGT00390000001195.a ENSGT00940000156859 ENSGT00490000043385 ENSGT00950000183043.a.b.b.a.a.a.b ##18 ENSGT00950000183043.a.b.b.a.b.u.b ##18 ENSGT00950000183043.a.b.b.a.b.u.a.b.a ##18 Steppe mouse MODERN SPECIES 3363 Ctsj (ENSMSIG00000021739) ##37 Tpbpa (ENSMSIG00000021726) Ctla2a (ENSMSIG00000021719) ##37 Tpbpb (ENSMSIG00000021690) Ctla2b (ENSMSIG00000021665) ##37 4930486L24Rik (ENSMSIG00000021647) ##37 Ctsll3 (ENSMSIG00000021625) ##37 BC051665 (ENSMSIG00000021609) ##37 Dapk1 (ENSMSIG00000021579) ENSMSIG00000021574 ENSMSIG00000021571 Gas1 (ENSMSIG00000021556) Tut7 (ENSMSIG00000021435) ENSMSIG00000021410 1700014D04Rik (ENSMSIG00000021396) ##18 Spata31d1d (ENSMSIG00000021387) ##18 spretus MODERN SPECIES 4 Slc35d2 (MGP_SPRETEiJ_G0019517) #27 Hsd17b3 (MGP_SPRETEiJ_G0019516) #28 MGP_SPRETEiJ_G0019515 #29 Ptch1 (MGP_SPRETEiJ_G0019514) #30 Fancc (MGP_SPRETEiJ_G0019513) #31 Aopep (MGP_SPRETEiJ_G0019512) #32 Fbp1 (MGP_SPRETEiJ_G0019511) #33 Fbp2 (MGP_SPRETEiJ_G0019510) #34 MGP_SPRETEiJ_G0019509 #35 Ctsm (MGP_SPRETEiJ_G0019508) #36 Cts7 (MGP_SPRETEiJ_G0019507) #37 Cts8 (MGP_SPRETEiJ_G0019506) ##37 Cts6 (MGP_SPRETEiJ_G0019505) ##37 Ctsr (MGP_SPRETEiJ_G0019504) ##37 Ctsq (MGP_SPRETEiJ_G0019503) ##37 Ctsj (MGP_SPRETEiJ_G0019502) ##37 MGP_SPRETEiJ_G0019501 Ctla2a (MGP_SPRETEiJ_G0019500) ##37 Tpbpb (MGP_SPRETEiJ_G0019499) Ctla2b (MGP_SPRETEiJ_G0019498) ##37 4930486L24Rik (MGP_SPRETEiJ_G0019497) ##37 Ctsll3 (MGP_SPRETEiJ_G0019496) ##37 BC051665 (MGP_SPRETEiJ_G0019495) ##37 Dapk1 (MGP_SPRETEiJ_G0019494) MGP_SPRETEiJ_G0019493 Gas1 (MGP_SPRETEiJ_G0019492) Tut7 (MGP_SPRETEiJ_G0019491) MGP_SPRETEiJ_G0019490 1700014D04Rik (MGP_SPRETEiJ_G0019489) ##18 Spata31d1d (MGP_SPRETEiJ_G0019488) ##18 Spata31d1a (MGP_SPRETEiJ_G0019487) ##18 Ryukyu mouse MODERN SPECIES 4 Zfp367 (MGP_CAROLIEiJ_G0018638) #26 Slc35d2 (MGP_CAROLIEiJ_G0018637) #27 Hsd17b3 (MGP_CAROLIEiJ_G0018636) #28 MGP_CAROLIEiJ_G0018635 #29 Ptch1 (MGP_CAROLIEiJ_G0018634) #30 Fancc (MGP_CAROLIEiJ_G0018633) #31 Aopep (MGP_CAROLIEiJ_G0018632) #32 Fbp1 (MGP_CAROLIEiJ_G0018631) #33 Fbp2 (MGP_CAROLIEiJ_G0018630) #34 MGP_CAROLIEiJ_G0018629 #35 Ctsm (MGP_CAROLIEiJ_G0018628) #36 Cts7 (MGP_CAROLIEiJ_G0018627) #37 Cts8 (MGP_CAROLIEiJ_G0018626) ##37 Cts6 (MGP_CAROLIEiJ_G0018625) ##37 Ctsr (MGP_CAROLIEiJ_G0018624) ##37 Ctsj (MGP_CAROLIEiJ_G0018623) ##37 MGP_CAROLIEiJ_G0018622 Tpbpb (MGP_CAROLIEiJ_G0018621) MGP_CAROLIEiJ_G0018620 ##37 MGP_CAROLIEiJ_G0018619 ##37 4930486L24Rik (MGP_CAROLIEiJ_G0018618) ##37 Ctsll3 (MGP_CAROLIEiJ_G0018617) ##37 BC051665 (MGP_CAROLIEiJ_G0018616) ##37 Dapk1 (MGP_CAROLIEiJ_G0018615) MGP_CAROLIEiJ_G0018614 Gas1 (MGP_CAROLIEiJ_G0018613) Tut7 (MGP_CAROLIEiJ_G0018612) MGP_CAROLIEiJ_G0018611 1700014D04Rik (MGP_CAROLIEiJ_G0018610) ##18 Spata31d1d (MGP_CAROLIEiJ_G0018609) ##18 MGP_CAROLIEiJ_G0018608 ##18 Shrew mouse MODERN SPECIES 7 Zfp367 (MGP_PahariEiJ_G0019702) #26 Slc35d2 (MGP_PahariEiJ_G0019701) #27 Hsd17b3 (MGP_PahariEiJ_G0019700) #28 MGP_PahariEiJ_G0019699 #29 Ptch1 (MGP_PahariEiJ_G0019698) #30 Fancc (MGP_PahariEiJ_G0019697) #31 Aopep (MGP_PahariEiJ_G0019696) #32 Fbp1 (MGP_PahariEiJ_G0019695) #33 Fbp2 (MGP_PahariEiJ_G0019694) #34 MGP_PahariEiJ_G0019693 #35 MGP_PahariEiJ_G0019692 #36 Cts7 (MGP_PahariEiJ_G0019691) #37 Cts8 (MGP_PahariEiJ_G0019690) ##37 Cts6 (MGP_PahariEiJ_G0019689) ##37 Ctsr (MGP_PahariEiJ_G0019688) ##37 Ctsj (MGP_PahariEiJ_G0019687) ##37 MGP_PahariEiJ_G0019686 MGP_PahariEiJ_G0019685 MGP_PahariEiJ_G0019684 ##37 MGP_PahariEiJ_G0019683 ##37 4930486L24Rik (MGP_PahariEiJ_G0019682) ##37 Ctsll3 (MGP_PahariEiJ_G0019681) ##37 BC051665 (MGP_PahariEiJ_G0019680) ##37 Dapk1 (MGP_PahariEiJ_G0019679) MGP_PahariEiJ_G0019678 Gas1 (MGP_PahariEiJ_G0019677) Tut7 (MGP_PahariEiJ_G0019676) MGP_PahariEiJ_G0019675 1700014D04Rik (MGP_PahariEiJ_G0019674) ##18 Spata31d1d (MGP_PahariEiJ_G0019673) ##18 Spata31d1b (MGP_PahariEiJ_G0019672) ##18 Rat MODERN SPECIES 8 AABR07028805.1 (ENSRNOG00000040024) LOC102555902 (ENSRNOG00000068265) ENSRNOG00000063185 LOC108348224 (ENSRNOG00000062387) Ctsm (ENSRNOG00000065730) #36 RGD1564657 (ENSRNOG00000050474) ##37 Cts7 (ENSRNOG00000033540) #37 Cts8l1 (ENSRNOG00000065532) ##37 Cts8 (ENSRNOG00000040000) ##37 Ctsr (ENSRNOG00000017888) ##37 MGC114246 (ENSRNOG00000039990) ##37 AABR07043347.1 (ENSRNOG00000051410) Ctsq (ENSRNOG00000048693) ##37 LOC100364523 (ENSRNOG00000056519) ##37 Ctsql2 (ENSRNOG00000017946) ##37 Ctsj (ENSRNOG00000046476) ##37 RGD1564827 (ENSRNOG00000069712) #36 Tpbpa (ENSRNOG00000039975) Ctla2a (ENSRNOG00000039971) ##37 Testin (ENSRNOG00000018028) ##37 Ctsll3 (ENSRNOG00000069877) ##37 RGD1308751 (ENSRNOG00000039954) ##37 Dapk1 (ENSRNOG00000018198) Tut7 (ENSRNOG00000016629) Isca1 (ENSRNOG00000018343) AABR07026929.1 (ENSRNOG00000042026) ##18 Spata31d1 (ENSRNOG00000027014) ##18 Spata31d1b (ENSRNOG00000069288) ##18 Spata31d3 (ENSRNOG00000056413) ##18 LOC100912252 (ENSRNOG00000042206) Golm1 (ENSRNOG00000018400) Muroidea_A ANCESTRAL SPECIES 14 ENSGT00940000160237 #27 ENSGT00940000160266 #28 ENSGT00940000161328 #29 ENSGT00940000159011 #30 ENSGT00390000016390 #31 ENSGT00940000155211 #32 ENSGT00390000015513.a.a.a #33 ENSGT00390000015513.a.a.b #34 ENSGT00940000153321.b.b.l.b.b.a.b #36 ENSGT00940000153321.b.b.l.b.b.a.a.b #37 ENSGT00940000153321.b.b.l.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.b ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.b ##37 ENSGT00940000153321.b.b.l.b.b.b.b.a ##37 ENSGT00940000153321.b.b.l.b.b.b.b.b ##37 ENSGT00940000153321.b.b.l.b.a.b ##37 ENSGT00940000153321.b.b.l.b.a.a.a.a ##37 ENSGT00940000153321.b.b.l.b.a.a.a.b ##37 ENSGT00940000153424.a.b ENSGT00390000001195.a ENSGT00940000156859 ENSGT00490000043385 ENSGT00950000183043.a.b.b.a.a.a.b ##18 ENSGT00950000183043.a.b.b.a.b.u.b ##18 ENSGT00940000164141 ENSGT00530000063675.b ENSGT00390000002445 ENSGT00940000157707 ENSGT00940000155181 ENSGT00390000016025.a Cricetidae DUPLICATION Cricetidae ANCESTRAL SPECIES ENSGT00940000153321.b.b.l.b.b.b.b.b.a ##37 Cricetinae ANCESTRAL SPECIES ENSGT00940000153321.b.b.l.b.b.b.b.b.a ##37 Chinese hamster chok1gshd MODERN SPECIES 317 Habp4 (ENSCGRG00001025040) #25 Zfp367 (ENSCGRG00001022531) #26 Slc35d2 (ENSCGRG00001020192) #27 Hsd17b3 (ENSCGRG00001009870) #28 ENSCGRG00001022738 #29 ENSCGRG00001008618 Ptch1 (ENSCGRG00001010176) #30 Fancc (ENSCGRG00001013491) #31 Aopep (ENSCGRG00001012713) #32 Fbp1 (ENSCGRG00001009150) #33 Fbp2 (ENSCGRG00001022515) #34 Cts8 (ENSCGRG00001013704) ##37 Cts6 (ENSCGRG00001022925) ##37 Ctsq (ENSCGRG00001002399) ##37 Ctsj (ENSCGRG00001024764) ##37 ENSCGRG00001015895 ##37 ENSCGRG00001024602 ##37 4930486L24Rik (ENSCGRG00001023066) ##37 ENSCGRG00001019274 ##37 ENSCGRG00001014152 ##37 BC051665 (ENSCGRG00001008665) ##37 Dapk1 (ENSCGRG00001000497) Gas1 (ENSCGRG00001010171) Tut7 (ENSCGRG00001020605) ENSCGRG00001007037 1700014D04Rik (ENSCGRG00001022165) ##18 Spata31d1d (ENSCGRG00001011836) ##18 ENSCGRG00001001460 Golm1 (ENSCGRG00001021525) ENSCGRG00001022085 Agtpbp1 (ENSCGRG00001021345) Cricetidae_B ANCESTRAL SPECIES 22 ENSGT00940000160237 #27 ENSGT00940000160266 #28 ENSGT00940000161328 #29 ENSGT00940000159011 #30 ENSGT00390000016390 #31 ENSGT00940000155211 #32 ENSGT00390000015513.a.a.a #33 ENSGT00390000015513.a.a.b #34 ENSGT00940000153321.b.b.l.b.b.a.b #36 ENSGT00940000153321.b.b.l.b.b.a.a.b #37 ENSGT00940000153321.b.b.l.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.b ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.b ##37 ENSGT00940000153321.b.b.l.b.b.b.b.a ##37 ENSGT00940000153321.b.b.l.b.b.b.b.b.a ##37 ENSGT00940000153321.b.b.l.b.a.b ##37 ENSGT00940000153321.b.b.l.b.a.a.a.a ##37 ENSGT00940000153321.b.b.l.b.a.a.a.b ##37 ENSGT00940000153424.a.b ENSGT00390000001195.a ENSGT00940000156859 ENSGT00490000043385 ENSGT00950000183043.a.b.b.a.a.a.b ##18 ENSGT00950000183043.a.b.b.a.b.u.a.b ##18 ENSGT00940000164141 ENSGT00530000063675.b ENSGT00390000002445 ENSGT00940000157707 ENSGT00940000155181 ENSGT00390000016025.a Northern American deer mouse MODERN SPECIES 18 ENSPEMG00000020678 #36 ENSPEMG00000030384 #37 ENSPEMG00000027810 #37 Cts8 (ENSPEMG00000021957) ##37 Cts6 (ENSPEMG00000016021) ##37 Ctsr (ENSPEMG00000001393) ##37 ENSPEMG00000029752 ##37 ENSPEMG00000026728 ##37 Ctsj (ENSPEMG00000015113) ##37 ENSPEMG00000031098 ENSPEMG00000020375 ENSPEMG00000026470 ENSPEMG00000030527 ##37 ENSPEMG00000026019 ##37 ENSPEMG00000028441 ##37 ENSPEMG00000022155 ##37 4930486L24Rik (ENSPEMG00000016874) ##37 Ctsll3 (ENSPEMG00000029464) ##37 BC051665 (ENSPEMG00000025235) ##37 Dapk1 (ENSPEMG00000022627) Gas1 (ENSPEMG00000007789) Tut7 (ENSPEMG00000014030) ENSPEMG00000029941 ENSPEMG00000028848 ##18 ENSPEMG00000025105 ##18 ENSPEMG00000025782 ##18 4921517D22Rik (ENSPEMG00000022165) Golm1 (ENSPEMG00000021119) Naa35 (ENSPEMG00000020283) Agtpbp1 (ENSPEMG00000003465) ENSPEMG00000030036 Cricetidae ANCESTRAL SPECIES 22 ENSGT00940000160237 #27 ENSGT00940000160266 #28 ENSGT00940000161328 #29 ENSGT00940000159011 #30 ENSGT00390000016390 #31 ENSGT00940000155211 #32 ENSGT00390000015513.a.a.a #33 ENSGT00390000015513.a.a.b #34 ENSGT00940000153321.b.b.l.b.b.a.b #36 ENSGT00940000153321.b.b.l.b.b.a.a.b #37 ENSGT00940000153321.b.b.l.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.b ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.b ##37 ENSGT00940000153321.b.b.l.b.b.b.b.a ##37 ENSGT00940000153321.b.b.l.b.b.b.b.b.b ##37 ENSGT00940000153321.b.b.l.b.a.b ##37 ENSGT00940000153321.b.b.l.b.a.a.a.a ##37 ENSGT00940000153321.b.b.l.b.a.a.a.b ##37 ENSGT00940000153424.a.b ENSGT00390000001195.a ENSGT00940000156859 ENSGT00490000043385 ENSGT00950000183043.a.b.b.a.a.a.b ##18 ENSGT00950000183043.a.b.b.a.b.u.b ##18 ENSGT00940000164141 ENSGT00530000063675.b ENSGT00390000002445 ENSGT00940000157707 ENSGT00940000155181 ENSGT00390000016025.a Cricetidae_B ANCESTRAL SPECIES ENSGT00940000153321.b.b.l.b.b.b.b.b.b ##37 Northern American deer mouse DUPLICATION Northern American deer mouse DUPLICATION Northern American deer mouse MODERN SPECIES 18 Fbp2 (ENSPEMG00000003200) #34 ENSPEMG00000020678 #36 ENSPEMG00000030384 #37 ENSPEMG00000027810 #37 Cts8 (ENSPEMG00000021957) ##37 Cts6 (ENSPEMG00000016021) ##37 Ctsr (ENSPEMG00000001393) ##37 ENSPEMG00000029752 ##37 ENSPEMG00000026728 ##37 Ctsj (ENSPEMG00000015113) ##37 ENSPEMG00000031098 ENSPEMG00000020375 ENSPEMG00000026470 ENSPEMG00000030527 ##37 ENSPEMG00000026019 ##37 ENSPEMG00000028441 ##37 ENSPEMG00000022155 ##37 4930486L24Rik (ENSPEMG00000016874) ##37 Ctsll3 (ENSPEMG00000029464) ##37 BC051665 (ENSPEMG00000025235) ##37 Dapk1 (ENSPEMG00000022627) Gas1 (ENSPEMG00000007789) Tut7 (ENSPEMG00000014030) ENSPEMG00000029941 ENSPEMG00000028848 ##18 ENSPEMG00000025105 ##18 ENSPEMG00000025782 ##18 4921517D22Rik (ENSPEMG00000022165) Golm1 (ENSPEMG00000021119) Naa35 (ENSPEMG00000020283) Agtpbp1 (ENSPEMG00000003465) Northern American deer mouse MODERN SPECIES 18 Golm1 (ENSPEMG00000021119) 4921517D22Rik (ENSPEMG00000022165) ENSPEMG00000025782 ##18 ENSPEMG00000025105 ##18 ENSPEMG00000028848 ##18 ENSPEMG00000029941 Tut7 (ENSPEMG00000014030) Gas1 (ENSPEMG00000007789) Dapk1 (ENSPEMG00000022627) BC051665 (ENSPEMG00000025235) ##37 Ctsll3 (ENSPEMG00000029464) ##37 4930486L24Rik (ENSPEMG00000016874) ##37 ENSPEMG00000022155 ##37 ENSPEMG00000028441 ##37 ENSPEMG00000026019 ##37 ENSPEMG00000030527 ##37 ENSPEMG00000026470 ENSPEMG00000020375 ENSPEMG00000031098 Ctsj (ENSPEMG00000015113) ##37 ENSPEMG00000026728 ##37 ENSPEMG00000029752 ##37 Ctsr (ENSPEMG00000001393) ##37 Cts6 (ENSPEMG00000016021) ##37 Cts8 (ENSPEMG00000021957) ##37 ENSPEMG00000027810 #37 ENSPEMG00000030384 #37 ENSPEMG00000020678 #36 Fbp2 (ENSPEMG00000003200) #34 Fbp1 (ENSPEMG00000020415) #33 Aopep (ENSPEMG00000011169) #32 Northern American deer mouse MODERN SPECIES 18 Naa35 (ENSPEMG00000020283) Golm1 (ENSPEMG00000021119) 4921517D22Rik (ENSPEMG00000022165) ENSPEMG00000025782 ##18 ENSPEMG00000025105 ##18 ENSPEMG00000028848 ##18 ENSPEMG00000029941 Tut7 (ENSPEMG00000014030) Gas1 (ENSPEMG00000007789) Dapk1 (ENSPEMG00000022627) BC051665 (ENSPEMG00000025235) ##37 Ctsll3 (ENSPEMG00000029464) ##37 4930486L24Rik (ENSPEMG00000016874) ##37 ENSPEMG00000022155 ##37 ENSPEMG00000028441 ##37 ENSPEMG00000026019 ##37 ENSPEMG00000030527 ##37 ENSPEMG00000026470 ENSPEMG00000020375 ENSPEMG00000031098 Ctsj (ENSPEMG00000015113) ##37 ENSPEMG00000026728 ##37 ENSPEMG00000029752 ##37 Ctsr (ENSPEMG00000001393) ##37 Cts6 (ENSPEMG00000016021) ##37 Cts8 (ENSPEMG00000021957) ##37 ENSPEMG00000027810 #37 ENSPEMG00000030384 #37 ENSPEMG00000020678 #36 Fbp2 (ENSPEMG00000003200) #34 Fbp1 (ENSPEMG00000020415) #33 Cricetinae ANCESTRAL SPECIES 20 ENSGT00520000055591.b #25 ENSGT00670000098074 #26 ENSGT00940000160237 #27 ENSGT00940000160266 #28 ENSGT00940000161328 #29 ENSGT00940000159011 #30 ENSGT00390000016390 #31 ENSGT00940000155211 #32 ENSGT00390000015513.a.a.a #33 ENSGT00390000015513.a.a.b #34 ENSGT00940000153321.b.b.l.b.b.a.a.b #37 ENSGT00940000153321.b.b.l.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.b ##37 ENSGT00940000153321.b.b.l.b.b.b.a.b ##37 ENSGT00940000153321.b.b.l.b.b.b.b.a ##37 ENSGT00940000153321.b.b.l.b.b.b.b.b.b ##37 ENSGT00940000153321.b.b.l.b.a.b ##37 ENSGT00940000153321.b.b.l.b.a.a.a.a ##37 ENSGT00940000153321.b.b.l.b.a.a.a.b ##37 ENSGT00940000153424.a.b ENSGT00390000001195.a ENSGT00940000156859 ENSGT00490000043385 ENSGT00950000183043.a.b.b.a.a.a.b ##18 ENSGT00950000183043.a.b.b.a.b.u.b ##18 ENSGT00940000164141 ENSGT00530000063675.b ENSGT00390000002445 ENSGT00940000157707 ENSGT00940000155181 ENSGT00390000016025.a Chinese hamster chok1gshd MODERN SPECIES 317 Zfp367 (ENSCGRG00001022531) #26 Slc35d2 (ENSCGRG00001020192) #27 Hsd17b3 (ENSCGRG00001009870) #28 ENSCGRG00001022738 #29 ENSCGRG00001008618 Ptch1 (ENSCGRG00001010176) #30 Fancc (ENSCGRG00001013491) #31 Aopep (ENSCGRG00001012713) #32 Fbp1 (ENSCGRG00001009150) #33 Fbp2 (ENSCGRG00001022515) #34 Cts8 (ENSCGRG00001013704) ##37 Cts6 (ENSCGRG00001022925) ##37 Ctsq (ENSCGRG00001002399) ##37 Ctsj (ENSCGRG00001024764) ##37 ENSCGRG00001015895 ##37 ENSCGRG00001024602 ##37 4930486L24Rik (ENSCGRG00001023066) ##37 ENSCGRG00001019274 ##37 ENSCGRG00001014152 ##37 BC051665 (ENSCGRG00001008665) ##37 Dapk1 (ENSCGRG00001000497) Gas1 (ENSCGRG00001010171) Tut7 (ENSCGRG00001020605) ENSCGRG00001007037 1700014D04Rik (ENSCGRG00001022165) ##18 Spata31d1d (ENSCGRG00001011836) ##18 ENSCGRG00001001460 Golm1 (ENSCGRG00001021525) ENSCGRG00001022085 Agtpbp1 (ENSCGRG00001021345) ENSCGRG00001013499 Murinae ANCESTRAL SPECIES 21 ENSGT00940000160266 #28 ENSGT00940000161328 #29 ENSGT00940000159011 #30 ENSGT00390000016390 #31 ENSGT00940000155211 #32 ENSGT00390000015513.a.a.a #33 ENSGT00390000015513.a.a.b #34 ENSGT00940000153321.b.b.l.b.b.a.b #36 ENSGT00940000153321.b.b.l.b.b.a.a.b.b #37 ENSGT00940000153321.b.b.l.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.b ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.b.e ##37 ENSGT00940000153321.b.b.l.b.b.b.b.a ##37 ENSGT00390000010930 ENSGT00940000153321.b.b.l.b.b.b.b.b ##37 ENSGT00940000153321.b.b.l.b.a.b ##37 ENSGT00940000153321.b.b.l.b.a.a.a.a ##37 ENSGT00940000153321.b.b.l.b.a.a.a.b ##37 ENSGT00940000153424.a.b ENSGT00390000001195.a ENSGT00940000156859 ENSGT00490000043385 ENSGT00950000183043.a.b.b.a.a.a.b ##18 ENSGT00950000183043.a.b.b.a.b.u.b ##18 ENSGT00950000183043.a.b.b.a.b.u.a.b.a ##18 ENSGT00950000183043.a.b.b.a.b.u.a.b.b ##18 ENSGT00940000164141 ENSGT00530000063675.b ENSGT00390000002445 ENSGT00940000157707 Mus ANCESTRAL SPECIES 18 ENSGT00940000161328 #29 ENSGT00940000159011 #30 ENSGT00390000016390 #31 ENSGT00940000155211 #32 ENSGT00390000015513.a.a.a #33 ENSGT00390000015513.a.a.b #34 ENSGT00940000153321.b.b.l.b.b.a.b.b #35 ENSGT00940000153321.b.b.l.b.b.a.b.a #36 ENSGT00940000153321.b.b.l.b.b.a.a.b.b #37 ENSGT00940000153321.b.b.l.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.b ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.b.e ##37 ENSGT00940000153321.b.b.l.b.b.b.b.a ##37 ENSGT00390000010930.a ENSGT00940000153321.b.b.l.b.b.b.b.b ##37 ENSGT00940000153321.b.b.l.b.a.b ##37 ENSGT00940000153321.b.b.l.b.a.a.a.a ##37 ENSGT00940000153321.b.b.l.b.a.a.a.b ##37 ENSGT00940000153424.a.b ENSGT00800000125290 ENSGT00390000001195.a ENSGT00940000156859 ENSGT00490000043385 ENSGT00950000183043.a.b.b.a.a.a.b ##18 ENSGT00950000183043.a.b.b.a.b.u.b ##18 ENSGT00950000183043.a.b.b.a.b.u.a.b.a ##18 ENSGT00950000183043.a.b.b.a.b.u.a.b.b ##18 ENSGT00940000164141 ENSGT00530000063675.b ENSGT00390000002445 Mus_A ANCESTRAL SPECIES 14 ENSGT00940000159011 #30 ENSGT00390000016390 #31 ENSGT00940000155211 #32 ENSGT00390000015513.a.a.a #33 ENSGT00390000015513.a.a.b #34 ENSGT00940000153321.b.b.l.b.b.a.b.b #35 ENSGT00940000153321.b.b.l.b.b.a.b.a #36 ENSGT00940000153321.b.b.l.b.b.a.a.b.b #37 ENSGT00940000153321.b.b.l.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.b ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.b.e ##37 ENSGT00940000153321.b.b.l.b.b.b.b.a ##37 ENSGT00390000010930.a ENSGT00390000010930.b ENSGT00940000153321.b.b.l.b.b.b.b.b ##37 ENSGT00940000153321.b.b.l.b.a.b ##37 ENSGT00940000153321.b.b.l.b.a.a.a.a ##37 ENSGT00940000153321.b.b.l.b.a.a.a.b ##37 ENSGT00940000153424.a.b ENSGT00800000125290 ENSGT00390000001195.a ENSGT00940000156859 ENSGT00490000043385 ENSGT00950000183043.a.b.b.a.a.a.b ##18 ENSGT00950000183043.a.b.b.a.b.u.b ##18 ENSGT00950000183043.a.b.b.a.b.u.a.b.a ##18 ENSGT00950000183043.a.b.b.a.b.u.a.b.b ##18 ENSGT00940000164141 ENSGT00530000063675.b ENSGT00390000002445 Mus_B DUPLICATION Mus_B ANCESTRAL SPECIES 13 ENSGT00390000016390 #31 ENSGT00940000155211 #32 ENSGT00390000015513.a.a.a #33 ENSGT00390000015513.a.a.b #34 ENSGT00940000153321.b.b.l.b.b.a.b.b #35 ENSGT00940000153321.b.b.l.b.b.a.b.a #36 ENSGT00940000153321.b.b.l.b.b.a.a.b.b #37 ENSGT00940000153321.b.b.l.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.b ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.b.e ##37 ENSGT00940000153321.b.b.l.b.b.b.b.a ##37 ENSGT00390000010930.a ENSGT00940000153321.b.b.l.b.b.b.b.b.d ##37 ENSGT00390000010930.b ENSGT00940000153321.b.b.l.b.b.b.b.b.c ##37 ENSGT00940000153321.b.b.l.b.a.b ##37 ENSGT00940000153321.b.b.l.b.a.a.a.a ##37 ENSGT00940000153321.b.b.l.b.a.a.a.b ##37 ENSGT00940000153424.a.b ENSGT00800000125290 ENSGT00390000001195.a ENSGT00940000156859 ENSGT00490000043385 ENSGT00950000183043.a.b.b.a.a.a.b ##18 ENSGT00950000183043.a.b.b.a.b.u.b ##18 ENSGT00950000183043.a.b.b.a.b.u.a.b.a ##18 ENSGT00950000183043.a.b.b.a.b.u.a.b.b ##18 ENSGT00940000164141 ENSGT00530000063675.b ENSGT00390000002445 Mouse MODERN SPECIES 4 Gm3604 (ENSMUSG00000094942) Zfp808 (ENSMUSG00000074867) Cts3 (ENSMUSG00000074870) #35 Gm49352 (ENSMUSG00000114904) Ctsm (ENSMUSG00000074871) #36 Cts7 (ENSMUSG00000021440) #37 Cts8 (ENSMUSG00000057446) ##37 Cts6 (ENSMUSG00000021441) ##37 Ctsr (ENSMUSG00000055679) ##37 Ctsq (ENSMUSG00000021439) ##37 Ctsj (ENSMUSG00000055298) ##37 Tpbpa (ENSMUSG00000033834) Ctla2a (ENSMUSG00000044258) ##37 Tpbpb (ENSMUSG00000062705) Gm49391 (ENSMUSG00000114432) Ctla2b (ENSMUSG00000074874) ##37 4930486L24Rik (ENSMUSG00000050345) ##37 Ctsll3 (ENSMUSG00000056728) ##37 BC051665 (ENSMUSG00000042243) ##37 Dapk1 (ENSMUSG00000021559) Gas1 (ENSMUSG00000052957) Tut7 (ENSMUSG00000035248) Isca1 (ENSMUSG00000044792) 1700014D04Rik (ENSMUSG00000051054) ##18 Spata31d1d (ENSMUSG00000043986) ##18 Spata31d1b (ENSMUSG00000091311) ##18 Spata31d1a (ENSMUSG00000050876) ##18 4921517D22Rik (ENSMUSG00000049902) Golm1 (ENSMUSG00000021556) Naa35 (ENSMUSG00000021555) Agtpbp1 (ENSMUSG00000021557) Mus_C ANCESTRAL SPECIES 10 ENSGT00390000016390 #31 ENSGT00940000155211 #32 ENSGT00390000015513.a.a.a #33 ENSGT00390000015513.a.a.b #34 ENSGT00940000153321.b.b.l.b.b.a.b.b #35 ENSGT00940000153321.b.b.l.b.b.a.b.a #36 ENSGT00940000153321.b.b.l.b.b.a.a.b.b #37 ENSGT00940000153321.b.b.l.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.b ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.b.e ##37 ENSGT00940000153321.b.b.l.b.b.b.b.a ##37 ENSGT00390000010930.a ENSGT00940000153321.b.b.l.b.b.b.b.b.d ##37 ENSGT00390000010930.b ENSGT00940000153321.b.b.l.b.b.b.b.b.c ##37 ENSGT00940000153321.b.b.l.b.a.b ##37 ENSGT00940000153321.b.b.l.b.a.a.a.a ##37 ENSGT00940000153321.b.b.l.b.a.a.a.b ##37 ENSGT00940000153424.a.b ENSGT00800000125290 ENSGT00390000001195.a ENSGT00940000156859 ENSGT00490000043385 ENSGT00950000183043.a.b.b.a.a.a.b ##18 ENSGT00950000183043.a.b.b.a.b.u.b ##18 ENSGT00950000183043.a.b.b.a.b.u.a.b.a ##18 ENSGT00950000183043.a.b.b.a.b.u.a.b.b ##18 ENSGT00940000164141 ENSGT00530000063675.b ENSGT00390000002445 Steppe mouse MODERN SPECIES 3363 Ctsj (ENSMSIG00000021739) ##37 Tpbpa (ENSMSIG00000021726) Ctla2a (ENSMSIG00000021719) ##37 Tpbpb (ENSMSIG00000021690) Ctla2b (ENSMSIG00000021665) ##37 4930486L24Rik (ENSMSIG00000021647) ##37 Ctsll3 (ENSMSIG00000021625) ##37 BC051665 (ENSMSIG00000021609) ##37 Dapk1 (ENSMSIG00000021579) ENSMSIG00000021574 ENSMSIG00000021571 Gas1 (ENSMSIG00000021556) Tut7 (ENSMSIG00000021435) ENSMSIG00000021410 1700014D04Rik (ENSMSIG00000021396) ##18 Spata31d1d (ENSMSIG00000021387) ##18 Spata31d1b (ENSMSIG00000021379) ##18 Spata31d1a (ENSMSIG00000021365) ##18 4921517D22Rik (ENSMSIG00000021349) Golm1 (ENSMSIG00000021316) spretus MODERN SPECIES 4 Fancc (MGP_SPRETEiJ_G0019513) #31 Aopep (MGP_SPRETEiJ_G0019512) #32 Fbp1 (MGP_SPRETEiJ_G0019511) #33 Fbp2 (MGP_SPRETEiJ_G0019510) #34 MGP_SPRETEiJ_G0019509 #35 Ctsm (MGP_SPRETEiJ_G0019508) #36 Cts7 (MGP_SPRETEiJ_G0019507) #37 Cts8 (MGP_SPRETEiJ_G0019506) ##37 Cts6 (MGP_SPRETEiJ_G0019505) ##37 Ctsr (MGP_SPRETEiJ_G0019504) ##37 Ctsq (MGP_SPRETEiJ_G0019503) ##37 Ctsj (MGP_SPRETEiJ_G0019502) ##37 MGP_SPRETEiJ_G0019501 Ctla2a (MGP_SPRETEiJ_G0019500) ##37 Tpbpb (MGP_SPRETEiJ_G0019499) Ctla2b (MGP_SPRETEiJ_G0019498) ##37 4930486L24Rik (MGP_SPRETEiJ_G0019497) ##37 Ctsll3 (MGP_SPRETEiJ_G0019496) ##37 BC051665 (MGP_SPRETEiJ_G0019495) ##37 Dapk1 (MGP_SPRETEiJ_G0019494) MGP_SPRETEiJ_G0019493 Gas1 (MGP_SPRETEiJ_G0019492) Tut7 (MGP_SPRETEiJ_G0019491) MGP_SPRETEiJ_G0019490 1700014D04Rik (MGP_SPRETEiJ_G0019489) ##18 Spata31d1d (MGP_SPRETEiJ_G0019488) ##18 Spata31d1a (MGP_SPRETEiJ_G0019487) ##18 4921517D22Rik (MGP_SPRETEiJ_G0019486) MGP_SPRETEiJ_G0019485 Naa35 (MGP_SPRETEiJ_G0019484) Agtpbp1 (MGP_SPRETEiJ_G0019483) Mus_B ANCESTRAL SPECIES 13 ENSGT00940000161328 #29 ENSGT00940000159011 #30 ENSGT00390000016390 #31 ENSGT00940000155211 #32 ENSGT00390000015513.a.a.a #33 ENSGT00390000015513.a.a.b #34 ENSGT00940000153321.b.b.l.b.b.a.b.b #35 ENSGT00940000153321.b.b.l.b.b.a.b.a #36 ENSGT00940000153321.b.b.l.b.b.a.a.b.b #37 ENSGT00940000153321.b.b.l.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.b ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.b.e ##37 ENSGT00940000153321.b.b.l.b.b.b.b.a ##37 ENSGT00390000010930.a ENSGT00940000153321.b.b.l.b.b.b.b.b.d ##37 ENSGT00390000010930.b ENSGT00940000153321.b.b.l.b.b.b.b.b.c ##37 ENSGT00940000153321.b.b.l.b.a.b ##37 ENSGT00940000153321.b.b.l.b.a.a.a.a ##37 ENSGT00940000153321.b.b.l.b.a.a.a.b ##37 ENSGT00940000153424.a.b ENSGT00800000125290 ENSGT00390000001195.a ENSGT00940000156859 ENSGT00490000043385 ENSGT00950000183043.a.b.b.a.a.a.b ##18 ENSGT00950000183043.a.b.b.a.b.u.b ##18 ENSGT00950000183043.a.b.b.a.b.u.a.b.a ##18 ENSGT00950000183043.a.b.b.a.b.u.a.b.b ##18 ENSGT00940000164141 Mouse MODERN SPECIES 4 Zfp934 (ENSMUSG00000074865) Gm49359 (ENSMUSG00000055228) Zfp935 (ENSMUSG00000113450) Gm3604 (ENSMUSG00000094942) Zfp808 (ENSMUSG00000074867) Cts3 (ENSMUSG00000074870) #35 Gm49352 (ENSMUSG00000114904) Ctsm (ENSMUSG00000074871) #36 Cts7 (ENSMUSG00000021440) #37 Cts8 (ENSMUSG00000057446) ##37 Cts6 (ENSMUSG00000021441) ##37 Ctsr (ENSMUSG00000055679) ##37 Ctsq (ENSMUSG00000021439) ##37 Ctsj (ENSMUSG00000055298) ##37 Tpbpa (ENSMUSG00000033834) Ctla2a (ENSMUSG00000044258) ##37 Tpbpb (ENSMUSG00000062705) Gm49391 (ENSMUSG00000114432) Ctla2b (ENSMUSG00000074874) ##37 4930486L24Rik (ENSMUSG00000050345) ##37 Ctsll3 (ENSMUSG00000056728) ##37 BC051665 (ENSMUSG00000042243) ##37 Dapk1 (ENSMUSG00000021559) Gas1 (ENSMUSG00000052957) Tut7 (ENSMUSG00000035248) Isca1 (ENSMUSG00000044792) 1700014D04Rik (ENSMUSG00000051054) ##18 Spata31d1d (ENSMUSG00000043986) ##18 Spata31d1b (ENSMUSG00000091311) ##18 Spata31d1a (ENSMUSG00000050876) ##18 4921517D22Rik (ENSMUSG00000049902) Mus_C ANCESTRAL SPECIES 10 ENSGT00940000161328 #29 ENSGT00940000159011 #30 ENSGT00390000016390 #31 ENSGT00940000155211 #32 ENSGT00390000015513.a.a.a #33 ENSGT00390000015513.a.a.b #34 ENSGT00940000153321.b.b.l.b.b.a.b.b #35 ENSGT00940000153321.b.b.l.b.b.a.b.a #36 ENSGT00940000153321.b.b.l.b.b.a.a.b.b #37 ENSGT00940000153321.b.b.l.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.b ##37 ENSGT00940000153321.b.b.l.b.b.b.a.a.a ##37 ENSGT00940000153321.b.b.l.b.b.b.a.b.e ##37 ENSGT00940000153321.b.b.l.b.b.b.b.a ##37 ENSGT00390000010930.a ENSGT00940000153321.b.b.l.b.b.b.b.b.d ##37 ENSGT00390000010930.b ENSGT00940000153321.b.b.l.b.b.b.b.b.c ##37 ENSGT00940000153321.b.b.l.b.a.b ##37 ENSGT00940000153321.b.b.l.b.a.a.a.a ##37 ENSGT00940000153321.b.b.l.b.a.a.a.b ##37 ENSGT00940000153424.a.b ENSGT00800000125290 ENSGT00390000001195.a ENSGT00940000156859 ENSGT00490000043385 ENSGT00950000183043.a.b.b.a.a.a.b ##18 ENSGT00950000183043.a.b.b.a.b.u.b ##18 ENSGT00950000183043.a.b.b.a.b.u.a.b.a ##18 ENSGT00950000183043.a.b.b.a.b.u.a.b.b ##18 ENSGT00940000164141 Steppe mouse MODERN SPECIES 3363 Ctsj (ENSMSIG00000021739) ##37 Tpbpa (ENSMSIG00000021726) Ctla2a (ENSMSIG00000021719) ##37 Tpbpb (ENSMSIG00000021690) Ctla2b (ENSMSIG00000021665) ##37 4930486L24Rik (ENSMSIG00000021647) ##37 Ctsll3 (ENSMSIG00000021625) ##37 BC051665 (ENSMSIG00000021609) ##37 Dapk1 (ENSMSIG00000021579) ENSMSIG00000021574 ENSMSIG00000021571 Gas1 (ENSMSIG00000021556) Tut7 (ENSMSIG00000021435) ENSMSIG00000021410 1700014D04Rik (ENSMSIG00000021396) ##18 Spata31d1d (ENSMSIG00000021387) ##18 Spata31d1b (ENSMSIG00000021379) ##18 Spata31d1a (ENSMSIG00000021365) ##18 spretus MODERN SPECIES 4 MGP_SPRETEiJ_G0019515 #29 Ptch1 (MGP_SPRETEiJ_G0019514) #30 Fancc (MGP_SPRETEiJ_G0019513) #31 Aopep (MGP_SPRETEiJ_G0019512) #32 Fbp1 (MGP_SPRETEiJ_G0019511) #33 Fbp2 (MGP_SPRETEiJ_G0019510) #34 MGP_SPRETEiJ_G0019509 #35 Ctsm (MGP_SPRETEiJ_G0019508) #36 Cts7 (MGP_SPRETEiJ_G0019507) #37 Cts8 (MGP_SPRETEiJ_G0019506) ##37 Cts6 (MGP_SPRETEiJ_G0019505) ##37 Ctsr (MGP_SPRETEiJ_G0019504) ##37 Ctsq (MGP_SPRETEiJ_G0019503) ##37 Ctsj (MGP_SPRETEiJ_G0019502) ##37 MGP_SPRETEiJ_G0019501 Ctla2a (MGP_SPRETEiJ_G0019500) ##37 Tpbpb (MGP_SPRETEiJ_G0019499) Ctla2b (MGP_SPRETEiJ_G0019498) ##37 4930486L24Rik (MGP_SPRETEiJ_G0019497) ##37 Ctsll3 (MGP_SPRETEiJ_G0019496) ##37 BC051665 (MGP_SPRETEiJ_G0019495) ##37 Dapk1 (MGP_SPRETEiJ_G0019494) MGP_SPRETEiJ_G0019493 Gas1 (MGP_SPRETEiJ_G0019492) Tut7 (MGP_SPRETEiJ_G0019491) MGP_SPRETEiJ_G0019490 1700014D04Rik (MGP_SPRETEiJ_G0019489) ##18 Spata31d1d (MGP_SPRETEiJ_G0019488) ##18 Spata31d1a (MGP_SPRETEiJ_G0019487) ##18 4921517D22Rik (MGP_SPRETEiJ_G0019486) MGP_SPRETEiJ_G0019485 Ryukyu mouse DUPLICATION Ryukyu mouse MODERN SPECIES 4 MGP_CAROLIEiJ_G0018635 #29 Ptch1 (MGP_CAROLIEiJ_G0018634) #30 Fancc (MGP_CAROLIEiJ_G0018633) #31 Aopep (MGP_CAROLIEiJ_G0018632) #32 Fbp1 (MGP_CAROLIEiJ_G0018631) #33 Fbp2 (MGP_CAROLIEiJ_G0018630) #34 MGP_CAROLIEiJ_G0018629 #35 Ctsm (MGP_CAROLIEiJ_G0018628) #36 Cts7 (MGP_CAROLIEiJ_G0018627) #37 Cts8 (MGP_CAROLIEiJ_G0018626) ##37 Cts6 (MGP_CAROLIEiJ_G0018625) ##37 Ctsr (MGP_CAROLIEiJ_G0018624) ##37 Ctsj (MGP_CAROLIEiJ_G0018623) ##37 MGP_CAROLIEiJ_G0018622 Tpbpb (MGP_CAROLIEiJ_G0018621) MGP_CAROLIEiJ_G0018620 ##37 MGP_CAROLIEiJ_G0018619 ##37 4930486L24Rik (MGP_CAROLIEiJ_G0018618) ##37 Ctsll3 (MGP_CAROLIEiJ_G0018617) ##37 BC051665 (MGP_CAROLIEiJ_G0018616) ##37 Dapk1 (MGP_CAROLIEiJ_G0018615) MGP_CAROLIEiJ_G0018614 Gas1 (MGP_CAROLIEiJ_G0018613) Tut7 (MGP_CAROLIEiJ_G0018612) MGP_CAROLIEiJ_G0018611 1700014D04Rik (MGP_CAROLIEiJ_G0018610) ##18 Spata31d1d (MGP_CAROLIEiJ_G0018609) ##18 MGP_CAROLIEiJ_G0018608 ##18 MGP_CAROLIEiJ_G0018607 ##18 4921517D22Rik (MGP_CAROLIEiJ_G0018606) Golm1 (MGP_CAROLIEiJ_G0018605) Ryukyu mouse MODERN SPECIES 4 Ptch1 (MGP_CAROLIEiJ_G0018634) #30 Fancc (MGP_CAROLIEiJ_G0018633) #31 Aopep (MGP_CAROLIEiJ_G0018632) #32 Fbp1 (MGP_CAROLIEiJ_G0018631) #33 Fbp2 (MGP_CAROLIEiJ_G0018630) #34 MGP_CAROLIEiJ_G0018629 #35 Ctsm (MGP_CAROLIEiJ_G0018628) #36 Cts7 (MGP_CAROLIEiJ_G0018627) #37 Cts8 (MGP_CAROLIEiJ_G0018626) ##37 Cts6 (MGP_CAROLIEiJ_G0018625) ##37 Ctsr (MGP_CAROLIEiJ_G0018624) ##37 Ctsj (MGP_CAROLIEiJ_G0018623) ##37 MGP_CAROLIEiJ_G0018622 Tpbpb (MGP_CAROLIEiJ_G0018621) MGP_CAROLIEiJ_G0018620 ##37 MGP_CAROLIEiJ_G0018619 ##37 4930486L24Rik (MGP_CAROLIEiJ_G0018618) ##37 Ctsll3 (MGP_CAROLIEiJ_G0018617) ##37 BC051665 (MGP_CAROLIEiJ_G0018616) ##37 Dapk1 (MGP_CAROLIEiJ_G0018615) MGP_CAROLIEiJ_G0018614 Gas1 (MGP_CAROLIEiJ_G0018613) Tut7 (MGP_CAROLIEiJ_G0018612) MGP_CAROLIEiJ_G0018611 1700014D04Rik (MGP_CAROLIEiJ_G0018610) ##18 Spata31d1d (MGP_CAROLIEiJ_G0018609) ##18 MGP_CAROLIEiJ_G0018608 ##18 MGP_CAROLIEiJ_G0018607 ##18 4921517D22Rik (MGP_CAROLIEiJ_G0018606) Golm1 (MGP_CAROLIEiJ_G0018605) MGP_CAROLIEiJ_G0018604 Shrew mouse DUPLICATION Shrew mouse MODERN SPECIES 7 MGP_PahariEiJ_G0019699 #29 Ptch1 (MGP_PahariEiJ_G0019698) #30 Fancc (MGP_PahariEiJ_G0019697) #31 Aopep (MGP_PahariEiJ_G0019696) #32 Fbp1 (MGP_PahariEiJ_G0019695) #33 Fbp2 (MGP_PahariEiJ_G0019694) #34 MGP_PahariEiJ_G0019693 #35 MGP_PahariEiJ_G0019692 #36 Cts7 (MGP_PahariEiJ_G0019691) #37 Cts8 (MGP_PahariEiJ_G0019690) ##37 Cts6 (MGP_PahariEiJ_G0019689) ##37 Ctsr (MGP_PahariEiJ_G0019688) ##37 Ctsj (MGP_PahariEiJ_G0019687) ##37 MGP_PahariEiJ_G0019686 MGP_PahariEiJ_G0019685 MGP_PahariEiJ_G0019684 ##37 MGP_PahariEiJ_G0019683 ##37 4930486L24Rik (MGP_PahariEiJ_G0019682) ##37 Ctsll3 (MGP_PahariEiJ_G0019681) ##37 BC051665 (MGP_PahariEiJ_G0019680) ##37 Dapk1 (MGP_PahariEiJ_G0019679) MGP_PahariEiJ_G0019678 Gas1 (MGP_PahariEiJ_G0019677) Tut7 (MGP_PahariEiJ_G0019676) MGP_PahariEiJ_G0019675 1700014D04Rik (MGP_PahariEiJ_G0019674) ##18 Spata31d1d (MGP_PahariEiJ_G0019673) ##18 Spata31d1b (MGP_PahariEiJ_G0019672) ##18 MGP_PahariEiJ_G0019671 ##18 4921517D22Rik (MGP_PahariEiJ_G0019670) Golm1 (MGP_PahariEiJ_G0019669) Shrew mouse MODERN SPECIES 7 Ptch1 (MGP_PahariEiJ_G0019698) #30 Fancc (MGP_PahariEiJ_G0019697) #31 Aopep (MGP_PahariEiJ_G0019696) #32 Fbp1 (MGP_PahariEiJ_G0019695) #33 Fbp2 (MGP_PahariEiJ_G0019694) #34 MGP_PahariEiJ_G0019693 #35 MGP_PahariEiJ_G0019692 #36 Cts7 (MGP_PahariEiJ_G0019691) #37 Cts8 (MGP_PahariEiJ_G0019690) ##37 Cts6 (MGP_PahariEiJ_G0019689) ##37 Ctsr (MGP_PahariEiJ_G0019688) ##37 Ctsj (MGP_PahariEiJ_G0019687) ##37 MGP_PahariEiJ_G0019686 MGP_PahariEiJ_G0019685 MGP_PahariEiJ_G0019684 ##37 MGP_PahariEiJ_G0019683 ##37 4930486L24Rik (MGP_PahariEiJ_G0019682) ##37 Ctsll3 (MGP_PahariEiJ_G0019681) ##37 BC051665 (MGP_PahariEiJ_G0019680) ##37 Dapk1 (MGP_PahariEiJ_G0019679) MGP_PahariEiJ_G0019678 Gas1 (MGP_PahariEiJ_G0019677) Tut7 (MGP_PahariEiJ_G0019676) MGP_PahariEiJ_G0019675 1700014D04Rik (MGP_PahariEiJ_G0019674) ##18 Spata31d1d (MGP_PahariEiJ_G0019673) ##18 Spata31d1b (MGP_PahariEiJ_G0019672) ##18 MGP_PahariEiJ_G0019671 ##18 4921517D22Rik (MGP_PahariEiJ_G0019670) Golm1 (MGP_PahariEiJ_G0019669) Naa35 (MGP_PahariEiJ_G0019668) Rat MODERN SPECIES 8 LOC108348224 (ENSRNOG00000062387) Ctsm (ENSRNOG00000065730) #36 RGD1564657 (ENSRNOG00000050474) ##37 Cts7 (ENSRNOG00000033540) #37 Cts8l1 (ENSRNOG00000065532) ##37 Cts8 (ENSRNOG00000040000) ##37 Ctsr (ENSRNOG00000017888) ##37 MGC114246 (ENSRNOG00000039990) ##37 AABR07043347.1 (ENSRNOG00000051410) Ctsq (ENSRNOG00000048693) ##37 LOC100364523 (ENSRNOG00000056519) ##37 Ctsql2 (ENSRNOG00000017946) ##37 Ctsj (ENSRNOG00000046476) ##37 RGD1564827 (ENSRNOG00000069712) #36 Tpbpa (ENSRNOG00000039975) Ctla2a (ENSRNOG00000039971) ##37 Testin (ENSRNOG00000018028) ##37 Ctsll3 (ENSRNOG00000069877) ##37 RGD1308751 (ENSRNOG00000039954) ##37 Dapk1 (ENSRNOG00000018198) Tut7 (ENSRNOG00000016629) Isca1 (ENSRNOG00000018343) AABR07026929.1 (ENSRNOG00000042026) ##18 Spata31d1 (ENSRNOG00000027014) ##18 Spata31d1b (ENSRNOG00000069288) ##18 Spata31d3 (ENSRNOG00000056413) ##18 LOC100912252 (ENSRNOG00000042206) Golm1 (ENSRNOG00000018400) Naa35 (ENSRNOG00000018417) ENSRNOG00000064986 Agtpbp1 (ENSRNOG00000018651) Upper Galilee mountains blind mole rat DUPLICATION Upper Galilee mountains blind mole rat MODERN SPECIES 827 Naa35 (ENSNGAG00000012706) ENSNGAG00000010869 ENSNGAG00000006724 #37 ENSNGAG00000001073 #37 ENSNGAG00000023443 ##37 ENSNGAG00000023296 ##37 Dapk1 (ENSNGAG00000023610) ENSNGAG00000016586 ENSNGAG00000012268 ENSNGAG00000021770 ENSNGAG00000022758 ENSNGAG00000022920 Upper Galilee mountains blind mole rat MODERN SPECIES 827 ENSNGAG00000022920 ENSNGAG00000022758 ENSNGAG00000021770 ENSNGAG00000012268 ENSNGAG00000016586 Dapk1 (ENSNGAG00000023610) ENSNGAG00000023296 ##37 ENSNGAG00000023443 ##37 ENSNGAG00000001073 #37 ENSNGAG00000006724 #37 ENSNGAG00000010869 Naa35 (ENSNGAG00000012706) Lesser Egyptian jerboa DUPLICATION Lesser Egyptian jerboa MODERN SPECIES 60 Fam240b (ENSJJAG00000019963) #20 ENSJJAG00000011401 ENSJJAG00000024373 #23 Cdc14b (ENSJJAG00000002103) #24 Habp4 (ENSJJAG00000015599) #25 Zfp367 (ENSJJAG00000006992) #26 Slc35d2 (ENSJJAG00000011235) #27 Hsd17b3 (ENSJJAG00000001953) #28 ENSJJAG00000018150 #29 Ptch1 (ENSJJAG00000016228) #30 Fancc (ENSJJAG00000001579) #31 Aopep (ENSJJAG00000015878) #32 Fbp1 (ENSJJAG00000010371) #33 Fbp2 (ENSJJAG00000022384) #34 ENSJJAG00000023768 #37 ENSJJAG00000005732 #37 Mfsd14b (ENSJJAG00000019365) #15 ENSJJAG00000002085 Sh3yl1 (ENSJJAG00000012955) ENSJJAG00000015451 ENSJJAG00000002056 Alkal2 (ENSJJAG00000015616) Tmem18 (ENSJJAG00000019305) Sntg2 (ENSJJAG00000019414) Tpo (ENSJJAG00000020157) Pxdn (ENSJJAG00000014227) Myt1l (ENSJJAG00000007682) Eipr1 (ENSJJAG00000017270) Trappc12 (ENSJJAG00000020597) Adi1 (ENSJJAG00000015172) Rnaseh1 (ENSJJAG00000020238) Lesser Egyptian jerboa MODERN SPECIES 60 Adi1 (ENSJJAG00000015172) Trappc12 (ENSJJAG00000020597) Eipr1 (ENSJJAG00000017270) Myt1l (ENSJJAG00000007682) Pxdn (ENSJJAG00000014227) Tpo (ENSJJAG00000020157) Sntg2 (ENSJJAG00000019414) Tmem18 (ENSJJAG00000019305) Alkal2 (ENSJJAG00000015616) ENSJJAG00000002056 ENSJJAG00000015451 Sh3yl1 (ENSJJAG00000012955) ENSJJAG00000002085 Mfsd14b (ENSJJAG00000019365) #15 ENSJJAG00000005732 #37 ENSJJAG00000023768 #37 Fbp2 (ENSJJAG00000022384) #34 Fbp1 (ENSJJAG00000010371) #33 Aopep (ENSJJAG00000015878) #32 Fancc (ENSJJAG00000001579) #31 Ptch1 (ENSJJAG00000016228) #30 ENSJJAG00000018150 #29 Hsd17b3 (ENSJJAG00000001953) #28 Slc35d2 (ENSJJAG00000011235) #27 Zfp367 (ENSJJAG00000006992) #26 Habp4 (ENSJJAG00000015599) #25 Cdc14b (ENSJJAG00000002103) #24 ENSJJAG00000024373 #23 ENSJJAG00000011401 Fam240b (ENSJJAG00000019963) #20 Cntnap3 (ENSJJAG00000006453) #19 Rodentia_A ANCESTRAL SPECIES 11 ENSGT00390000008742 ENSGT00940000157487 ENSGT00390000002374 ENSGT00940000153434.a.a ENSGT00940000161055 ENSGT00390000016025.a ENSGT00940000155181 ENSGT00940000157707 ENSGT00390000002445 ENSGT00530000063675.b ENSGT00940000164141 ENSGT00490000043385 ENSGT00940000156859 ENSGT00390000001195.a ENSGT00940000153424.a.b ENSGT00940000153321.b.b.l.b #37 Sciuridae ANCESTRAL SPECIES 6 ENSGT00390000008742 ENSGT00940000157487 ENSGT00390000002374.u ENSGT00940000153434.a.a ENSGT00940000161055 ENSGT00390000016025.a ENSGT00940000155181 ENSGT00940000157707 ENSGT00390000002445 ENSGT00530000063675.b ENSGT00940000164141 ENSGT00490000043385 ENSGT00940000156859 ENSGT00390000001195.a ENSGT00940000153424.a.b ENSGT00940000153321.b.b.l.b #37 Marmotini ANCESTRAL SPECIES 108 ENSGT00940000156437 ENSGT00390000008742 ENSGT00940000157487 ENSGT00390000002374.u ENSGT00940000153434.a.a ENSGT00940000161055 ENSGT00940000155181 ENSGT00940000157707 ENSGT00390000002445 ENSGT00530000063675.b ENSGT00940000164141 ENSGT00490000043385 ENSGT00940000156859 ENSGT00390000001195.a ENSGT00940000153424.a.b ENSGT00940000153321.b.b.l.b #37 Alpin marmot MODERN SPECIES 68 RUFY2 (ENSMMMG00000009654) ENSMMMG00000009862 PBLD (ENSMMMG00000009871) ATOH7 (ENSMMMG00000010063) MYPN (ENSMMMG00000010068) HERC4 (ENSMMMG00000010126) ENSMMMG00000010229 ENSMMMG00000010250 CTNNA3 (ENSMMMG00000010289) LRRTM3 (ENSMMMG00000010362) ENSMMMG00000010382 ENSMMMG00000010389 ENSMMMG00000010403 REEP3 (ENSMMMG00000010412) DAPK1 (ENSMMMG00000010458) ENSMMMG00000010528 #37 Marmotini_b ANCESTRAL SPECIES 246 ENSGT00940000155181 ENSGT00940000157707 ENSGT00390000002445 ENSGT00530000063675.b ENSGT00940000164141 ENSGT00490000043385 ENSGT00940000156859 ENSGT00390000001195.a ENSGT00940000153424.a.b ENSGT00940000153321.b.b.l.b #37 Arctic ground squirrel MODERN SPECIES 302 NAA35 (ENSUPAG00010023699) GOLM1 (ENSUPAG00010023698) ENSUPAG00010023697 ISCA1 (ENSUPAG00010023696) TUT7 (ENSUPAG00010023694) GAS1 (ENSUPAG00010023687) DAPK1 (ENSUPAG00010023679) ENSUPAG00010023673 #37