Pseudocrenilabrinae	ANCESTRAL SPECIES	21	ENSGT00390000006086	ENSGT00390000004852.a.b #7	ENSGT00390000006835 #8	ENSGT01050000244850.B #10	ENSGT00390000000903.a.i #11	ENSGT00390000001439 #12	ENSGT00940000157992 #13	ENSGT00940000153769.E #14	ENSGT00940000162238.a.b #15	ENSGT01030000234814 #16	ENSGT00940000160568 #17	ENSGT00390000016313.a.a #18	ENSGT00510000047602 #19	ENSGT00940000154527.a.a.b.a #20	ENSGT01030000234535.D #21	ENSGT01030000234588.b.b.a.b #22	ENSGT00940000155908.a #23	ENSGT00940000165002 #24	ENSGT00940000161075 #25	ENSGT00940000156857.b #26	ENSGT00940000156857.a.o.b #27	ENSGT00940000156144.a.b #28	ENSGT00530000063745.b #29	ENSGT00390000006546 #30	ENSGT00440000033504.B.b #31	ENSGT00940000155867.a.b #32	ENSGT01040000240400.c.b.a.a.b #33	ENSGT00940000161249 #34	ENSGT00940000167336 #35	ENSGT00620000087961.a.b.a.b.a #36	ENSGT00940000155209.mb #37
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	10	ENSGT00390000004852.a.b #7	ENSGT00390000006835 #8	ENSGT00940000176839.c.b.a.a #9	ENSGT01050000244850.B #10	ENSGT00390000000903.a.i #11	ENSGT00390000001439 #12	ENSGT00940000157992 #13	ENSGT00940000153769.E #14	ENSGT00940000162238.a.b #15	ENSGT01030000234814 #16	ENSGT00940000160568 #17	ENSGT00390000016313.a.a #18	ENSGT00510000047602 #19	ENSGT00940000154527.a.a.b.a #20	ENSGT01030000234535.D #21	ENSGT01030000234588.b.b.a.b #22	ENSGT00940000155908.a #23	ENSGT00940000165002 #24	ENSGT00940000161075 #25	ENSGT00940000156857.b #26	ENSGT00940000156857.a.o.b #27	ENSGT00940000156144.a.b #28	ENSGT00530000063745.b #29	ENSGT00390000006546 #30	ENSGT00440000033504.B.b #31	ENSGT00940000155867.a.b #32	ENSGT01040000240400.c.b.a.a.b #33	ENSGT00940000161249 #34	ENSGT00940000167336 #35	ENSGT00620000087961.a.b.a.b.a #36	ENSGT00940000155209.mb #37
Haplochromini	ANCESTRAL SPECIES	9	ENSGT00390000004852.a.b #7	ENSGT00390000006835 #8	ENSGT00940000176839.c.b.a.a #9	ENSGT01050000244850.B #10	ENSGT00390000000903.a.i #11	ENSGT00390000001439 #12	ENSGT00940000157992 #13	ENSGT00940000153769.E #14	ENSGT00940000162238.a.b #15	ENSGT01030000234814 #16	ENSGT00940000160568 #17	ENSGT00390000016313.a.a #18	ENSGT00510000047602 #19	ENSGT00940000154527.a.a.b.a #20	ENSGT01030000234535.D #21	ENSGT01030000234588.b.b.a.b #22	ENSGT00940000155908.a #23	ENSGT00940000165002 #24	ENSGT00940000161075 #25	ENSGT00940000156857.b #26	ENSGT00940000156857.a.o.b.a #27	ENSGT00940000156144.a.b #28	ENSGT00530000063745.b #29	ENSGT00390000006546 #30	ENSGT00440000033504.B.b #31	ENSGT00940000155867.a.b #32	ENSGT01040000240400.c.b.a.a.b #33	ENSGT00940000161249 #34	ENSGT00940000167336 #35	ENSGT00620000087961.a.b.a.b.a #36	ENSGT00940000155209.mb #37
Burton s mouthbrooder	MODERN SPECIES	385															st8sia1 (ENSHBUG00000018398) #21	tnni1d (ENSHBUG00000018415) #22	ENSHBUG00000018459 #23	ENSHBUG00000018480 #24	ENSHBUG00000018571 #25	PARP11 (ENSHBUG00000018582) #26	ENSHBUG00000001054 ##26	ENSHBUG00000018628 #27	tmtc2a (ENSHBUG00000018695) #28	mettl25 (ENSHBUG00000018706) #29	ccdc59 (ENSHBUG00000018713) #30	CRACR2A (ENSHBUG00000018719) #31	prmt8b (ENSHBUG00000018781) #32	ENSHBUG00000018789 #33	tspan11 (ENSHBUG00000018804) #34	sema3aa (ENSHBUG00000018911) #35	ENSHBUG00000019024 #36
Haplochromini_A	ANCESTRAL SPECIES	9	ENSGT00390000006086	ENSGT00390000004852.a.b #7	ENSGT00390000006835 #8	ENSGT00940000176839.c.b.a.a #9	ENSGT01050000244850.B #10	ENSGT00390000000903.a.i #11	ENSGT00390000001439 #12	ENSGT00940000157992 #13	ENSGT00940000153769.E #14	ENSGT01030000234814 #16	ENSGT00940000160568 #17	ENSGT00390000016313.a.a #18	ENSGT00510000047602 #19	ENSGT00940000154527.a.a.b.a #20	ENSGT01030000234535.D #21	ENSGT01030000234588.b.b.a.b #22	ENSGT00940000155908.a #23	ENSGT00940000165002 #24	ENSGT00940000161075 #25	ENSGT00940000156857.b #26	ENSGT00940000156857.a.o.b.a #27	ENSGT00940000156144.a.b #28	ENSGT00530000063745.b #29	ENSGT00390000006546 #30	ENSGT00440000033504.B.b #31	ENSGT00940000155867.a.b #32	ENSGT01040000240400.c.b.a.a.b #33	ENSGT00940000161249 #34	ENSGT00940000167336 #35	ENSGT00620000087961.a.b.a.b.a #36	ENSGT00940000155209.mb #37
P. nyererei	MODERN SPECIES	347	zc3hc1 (ENSPNYG00000020692)	ube2h (ENSPNYG00000020704) #7	nrf1 (ENSPNYG00000020736) #8	ENSPNYG00000020764 #9	plxna4 (ENSPNYG00000020783) #10	chchd3a (ENSPNYG00000020870) #11	exoc4 (ENSPNYG00000020878) #12	LRGUK (ENSPNYG00000020932) #13	ENSPNYG00000020982 #14	ENSPNYG00000021049 #16	copg2 (ENSPNYG00000021066) #18	mest (ENSPNYG00000021121) #19	ENSPNYG00000021169 #20	ENSPNYG00000021235	st8sia1 (ENSPNYG00000021259) #21	tnni1d (ENSPNYG00000000356) #22	ENSPNYG00000000366 #23	ENSPNYG00000000370 #23	ENSPNYG00000000381 #24	ENSPNYG00000000405 #25	PARP11 (ENSPNYG00000000430) #26	ENSPNYG00000000440 #27	tmtc2a (ENSPNYG00000000525) #28	ENSPNYG00000000545 ##28	mettl25 (ENSPNYG00000000557) #29	ccdc59 (ENSPNYG00000000586) #30	CRACR2A (ENSPNYG00000000606) #31	prmt8b (ENSPNYG00000000641) #32	ENSPNYG00000000666 #33	tspan11 (ENSPNYG00000000682) #34	sema3aa (ENSPNYG00000000710) #35
Haplochromini_B	ANCESTRAL SPECIES	11	ENSGT00390000006086	ENSGT00390000004852.a.b #7	ENSGT00390000006835 #8	ENSGT00940000176839.c.b.a.a #9	ENSGT01050000244850.B #10	ENSGT00390000000903.a.i #11	ENSGT00390000001439 #12	ENSGT00940000157992 #13	ENSGT00940000153769.E #14	ENSGT01030000234814 #16	ENSGT00940000160568 #17	ENSGT00390000016313.a.a #18	ENSGT00510000047602 #19	ENSGT00940000154527.a.a.b.a #20	ENSGT01030000234535.D #21	ENSGT01030000234588.b.b.a.b #22	ENSGT00940000155908.a #23	ENSGT00940000165002 #24	ENSGT00940000161075 #25	ENSGT00940000156857.b #26	ENSGT00940000156857.a.o.b.a #27	ENSGT00940000156144.a.b #28	ENSGT00530000063745.b #29	ENSGT00390000006546 #30	ENSGT00440000033504.B.b #31	ENSGT00940000155867.a.b #32	ENSGT01040000240400.c.b.a.a.b #33	ENSGT00940000161249 #34	ENSGT00940000167336 #35	ENSGT00620000087961.a.b.a.b.a #36	ENSGT00940000155209.mb #37
Zebra mbuna	MODERN SPECIES	1099	zc3hc1 (ENSMZEG00005007142)	ube2h (ENSMZEG00005007122) #7	nrf1 (ENSMZEG00005007066) #8	ENSMZEG00005007055 #9	plxna4 (ENSMZEG00005007001) #10	chchd3a (ENSMZEG00005006981) #11	exoc4 (ENSMZEG00005006892) #12	LRGUK (ENSMZEG00005006844) #13	ENSMZEG00005006784 #14	ENSMZEG00005006765 #16	ucn3l (ENSMZEG00005006758) #17	copg2 (ENSMZEG00005006704) #18	mest (ENSMZEG00005006655) #19	ENSMZEG00005006570 #20	st8sia1 (ENSMZEG00005006535) #21	tnni1d (ENSMZEG00005006511) #22	ENSMZEG00005006505 #23	ENSMZEG00005006465 #23	ENSMZEG00005006403 #24	ENSMZEG00005006337 #25	PARP11 (ENSMZEG00005006306) #26	ENSMZEG00005006075 #27	ENSMZEG00005006055 ##26	tmtc2a (ENSMZEG00005006025) #28	mettl25 (ENSMZEG00005006005) #29	ccdc59 (ENSMZEG00005005994) #30	CRACR2A (ENSMZEG00005005975) #31	prmt8b (ENSMZEG00005005938) #32	ENSMZEG00005005929 #33	tspan11 (ENSMZEG00005005904) #34	sema3aa (ENSMZEG00005005876) #35
Eastern happy	MODERN SPECIES	8	ube2h (ENSACLG00000024995) #7	nrf1 (ENSACLG00000024955) #8	ENSACLG00000024952 #9	ENSACLG00000024951	plxna4 (ENSACLG00000024922) #10	chchd3a (ENSACLG00000024787) #11	exoc4 (ENSACLG00000024651) #12	LRGUK (ENSACLG00000024536) #13	ENSACLG00000024488 #14	ENSACLG00000024453 #16	ucn3l (ENSACLG00000024441) #17	copg2 (ENSACLG00000024328) #18	mest (ENSACLG00000024403) #19	ENSACLG00000024275 #20	st8sia1 (ENSACLG00000024261) #21	tnni1d (ENSACLG00000024062) #22	ENSACLG00000024005 #23	ENSACLG00000023980 #24	ENSACLG00000023921 #25	PARP11 (ENSACLG00000023902) #26	ENSACLG00000023893 ##26	ENSACLG00000023877	ENSACLG00000023809 #27	tmtc2a (ENSACLG00000023776) #28	ccdc59 (ENSACLG00000023759) #30	mettl25 (ENSACLG00000023704) #29	CRACR2A (ENSACLG00000023670) #31	prmt8b (ENSACLG00000023620) #32	ENSACLG00000023608 #33	tspan11 (ENSACLG00000023552) #34	sema3aa (ENSACLG00000023484) #35
Lyretail cichlid	MODERN SPECIES	291	ube2h (ENSNBRG00000004594) #7	nrf1 (ENSNBRG00000004629) #8	ENSNBRG00000004671 #9	plxna4 (ENSNBRG00000004689) #10	chchd3a (ENSNBRG00000004791) #11	exoc4 (ENSNBRG00000004823) #12	LRGUK (ENSNBRG00000004908) #13	ENSNBRG00000005040 #14	ENSNBRG00000005166 #16	ucn3l (ENSNBRG00000005178) #17	copg2 (ENSNBRG00000005201) #18	mest (ENSNBRG00000005273) #19	ENSNBRG00000005303 #20	ENSNBRG00000005361	st8sia1 (ENSNBRG00000005372) #21	tnni1d (ENSNBRG00000005403) #22	ENSNBRG00000005424 #23	ENSNBRG00000005478 #24	ENSNBRG00000005629 #25	PARP11 (ENSNBRG00000005665) #26	ENSNBRG00000005708 ##26	tmtc2a (ENSNBRG00000005847) #28	mettl25 (ENSNBRG00000005885) #29	CRACR2A (ENSNBRG00000005924) #31	prmt8b (ENSNBRG00000005971) #32	ENSNBRG00000005998 #33	tspan11 (ENSNBRG00000006004) #34	sema3aa (ENSNBRG00000006039) #35	ENSNBRG00000006103 #36	ENSNBRG00000006276 #37	hgfa (ENSNBRG00000006504)
Nile tilapia	MODERN SPECIES	8	zc3hc1 (ENSONIG00000011644)	ube2h (ENSONIG00000011642) #7	nrf1 (ENSONIG00000011640) #8	plxna4 (ENSONIG00000011623) #10	chchd3a (ENSONIG00000011620) #11	exoc4 (ENSONIG00000011612) #12	LRGUK (ENSONIG00000011607) #13	ENSONIG00000011602 #14	ENSONIG00000035512 #16	ucn3l (ENSONIG00000020521) #17	copg2 (ENSONIG00000011594) #18	mest (ENSONIG00000033116) #19	ENSONIG00000011583 #20	ENSONIG00000038584	st8sia1 (ENSONIG00000011579) #21	tnni1d (ENSONIG00000010778) #22	ENSONIG00000011571 #23	ENSONIG00000011569 #24	ENSONIG00000011558 #25	PARP11 (ENSONIG00000039090) #26	ENSONIG00000011552 #27	tmtc2a (ENSONIG00000011550) #28	mettl25 (ENSONIG00000011546) #29	ccdc59 (ENSONIG00000011545) #30	CRACR2A (ENSONIG00000011543) #31	prmt8b (ENSONIG00000011541) #32	ENSONIG00000020520 #33	tspan11 (ENSONIG00000011539) #34	sema3aa (ENSONIG00000011531) #35	ENSONIG00000011526 #36	cacna2d1a (ENSONIG00000011520) #37