Ovalentaria_B	ANCESTRAL SPECIES	23	ENSGT00390000004852.a.b	ENSGT00390000006835	ENSGT01050000244850.B	ENSGT00390000000903.a.i	ENSGT00390000001439	ENSGT00940000157992	ENSGT00940000153769.E	ENSGT00980000199766	ENSGT00940000162238.a.b	ENSGT01030000234814	ENSGT00940000160568	ENSGT00390000016313.a.a	ENSGT00510000047602	ENSGT00940000154527.a.a.b.a	ENSGT01030000234535.D #21	ENSGT01030000234588.b.b.a.b #22	ENSGT00940000155908.a #23	ENSGT00940000165002 #24	ENSGT00940000161075 #25	ENSGT00940000156857.b #26	ENSGT00940000156857.a #27	ENSGT00940000156144.a.b #28	ENSGT00530000063745.b #29	ENSGT00390000006546 #30	ENSGT00440000033504.B.b #31	ENSGT00940000155867.a.b #32	ENSGT01040000240400.c.b.a.a.b #33	ENSGT00940000161249 #34	ENSGT00940000167336 #35	ENSGT01030000235313	ENSGT00620000087961.a.b.a.b.a
Pomacentridae	ANCESTRAL SPECIES	53	ENSGT00390000006086	ENSGT00390000004852.a.b	ENSGT00390000006835	ENSGT01050000244850.B	ENSGT00390000000903.a.i	ENSGT00390000001439	ENSGT00940000157992	ENSGT00940000153769.E	ENSGT00980000199766	ENSGT01030000234814	ENSGT00940000160568	ENSGT00390000016313.a.a	ENSGT00510000047602	ENSGT00940000154527.a.a.b.a	ENSGT01030000234535.D #21	ENSGT01030000234588.b.b.a.b #22	ENSGT00940000155908.a #23	ENSGT00940000165002 #24	ENSGT00940000161075 #25	ENSGT00940000156857.b #26	ENSGT00940000156857.a #27	ENSGT00940000156144.a.b #28	ENSGT00530000063745.b #29	ENSGT00390000006546 #30	ENSGT00440000033504.B.b #31	ENSGT00940000155867.a.b #32	ENSGT01040000240400.c.b.a.a.b.a #33	ENSGT00940000161249 #34	ENSGT00940000167336 #35	ENSGT01030000235313	ENSGT00620000087961.a.b.a.b.a
Pomacentridae_A	ANCESTRAL SPECIES	23	ENSGT00390000006086	ENSGT00390000004852.a.b	ENSGT00390000006835	ENSGT01050000244850.B	ENSGT00390000000903.a.i	ENSGT00390000001439	ENSGT00940000157992	ENSGT00940000153769.E	ENSGT00980000199766	ENSGT01030000234814	ENSGT00940000160568	ENSGT00390000016313.a.a	ENSGT00510000047602	ENSGT00940000154527.a.a.b.a	ENSGT01030000234535.D #21	ENSGT01030000234588.b.b.a.b #22	ENSGT00940000155908.a #23	ENSGT00940000165002 #24	ENSGT00940000161075 #25	ENSGT00940000156857.b #26	ENSGT00940000156857.a #27	ENSGT00940000156144.a.b #28	ENSGT00530000063745.b #29	ENSGT00390000006546 #30	ENSGT00440000033504.B.b #31	ENSGT00940000155867.a.b #32	ENSGT01040000240400.c.b.a.a.b.a #33	ENSGT00940000161249 #34	ENSGT00940000167336 #35	ENSGT00620000087961.a.b.a.b.a	ENSGT00940000155209.mb.e
Amphiprion	ANCESTRAL SPECIES	53	ENSGT00390000006086	ENSGT00390000004852.a.b	ENSGT00390000006835	ENSGT01050000244850.B	ENSGT00390000000903.a.i	ENSGT00390000001439	ENSGT00940000157992	ENSGT00940000153769.E	ENSGT00980000199766	ENSGT01030000234814	ENSGT00940000160568	ENSGT00390000016313.a.a	ENSGT00510000047602	ENSGT00940000154527.a.a.b.a	ENSGT01030000234535.D #21	ENSGT01030000234588.b.b.a.b #22	ENSGT00940000155908.a #23	ENSGT00940000165002 #24	ENSGT00940000161075 #25	ENSGT00940000156857.b #26	ENSGT00940000156857.a #27	ENSGT00940000156144.a.b #28	ENSGT00530000063745.b #29	ENSGT00390000006546 #30	ENSGT00440000033504.B.b #31	ENSGT00940000155867.a.b #32	ENSGT01040000240400.c.b.a.a.b.a #33	ENSGT00940000161249 #34	ENSGT00940000167336 #35	ENSGT00620000087961.a.b.a.b.a	ENSGT00940000155209.mb.e
Clown anemonefish	MODERN SPECIES	1251															st8sia1 (ENSAOCG00000022921) #21	tnni1d (ENSAOCG00000022943) #22	ENSAOCG00000023025 #23	ENSAOCG00000023068 #24	ENSAOCG00000023092 #25	PARP11 (ENSAOCG00000023104) #26	ENSAOCG00000023122 #27	tmtc2a (ENSAOCG00000023152) #28	mettl25 (ENSAOCG00000023171) #29	ccdc59 (ENSAOCG00000001895) #30	CRACR2A (ENSAOCG00000023189) #31	prmt8b (ENSAOCG00000023214) #32	ENSAOCG00000023221 #33	tspan11 (ENSAOCG00000002692) #34	ENSAOCG00000023251 #35
Orange clownfish	MODERN SPECIES	13	zc3hc1 (ENSAPEG00000004907)	ube2h (ENSAPEG00000004918)	nrf1 (ENSAPEG00000004972)	plxna4 (ENSAPEG00000005074)	ENSAPEG00000005211	chchd3a (ENSAPEG00000005247)	exoc4 (ENSAPEG00000005292)	LRGUK (ENSAPEG00000005386)	ENSAPEG00000005456	ENSAPEG00000005588	ucn3l (ENSAPEG00000005616)	copg2 (ENSAPEG00000005645)	mest (ENSAPEG00000005803)	ENSAPEG00000005872	st8sia1 (ENSAPEG00000006013) #21	tnni1d (ENSAPEG00000006053) #22	ENSAPEG00000006087 #23	ENSAPEG00000006162 #24	SLC6A12 (ENSAPEG00000006192) #25	PARP11 (ENSAPEG00000006255) #26	ENSAPEG00000006278 #27	tmtc2a (ENSAPEG00000006294) #28	mettl25 (ENSAPEG00000006348) #29	ccdc59 (ENSAPEG00000006365) #30	CRACR2A (ENSAPEG00000006383) #31	prmt8b (ENSAPEG00000006496) #32	ENSAPEG00000006538 #33	tspan11 (ENSAPEG00000006557) #34	sema3aa (ENSAPEG00000006668) #35	ENSAPEG00000006747	cacna2d1a (ENSAPEG00000006854)
Spiny chromis	MODERN SPECIES	2489															ENSAPOG00000017035	tnni1d (ENSAPOG00000017480) #22	ENSAPOG00000017499 ##23
Bicolor damselfish	MODERN SPECIES	2424															st8sia1 (ENSSPAG00000004612) #21	tnni1d (ENSSPAG00000004645) #22	ENSSPAG00000004653 #23	ENSSPAG00000004667 #23
Cichlidae	ANCESTRAL SPECIES	24	ENSGT00390000004852.a.b	ENSGT00390000006835	ENSGT01050000244850.B	ENSGT00390000000903.a.i	ENSGT00390000001439	ENSGT00940000157992	ENSGT00940000153769.E	ENSGT00980000199766	ENSGT00940000162238.a.b	ENSGT01030000234814	ENSGT00940000160568	ENSGT00390000016313.a.a	ENSGT00510000047602	ENSGT00940000154527.a.a.b.a	ENSGT01030000234535.D #21	ENSGT01030000234588.b.b.a.b #22	ENSGT00940000155908.a #23	ENSGT00940000165002 #24	ENSGT00940000161075 #25	ENSGT00940000156857.b #26	ENSGT00940000156857.a #27	ENSGT00940000156144.a.b #28	ENSGT00530000063745.b #29	ENSGT00390000006546 #30	ENSGT00440000033504.B.b #31	ENSGT00940000155867.a.b #32	ENSGT01040000240400.c.b.a.a.b #33	ENSGT00940000161249 #34	ENSGT00940000167336 #35	ENSGT01030000235313	ENSGT00620000087961.a.b.a.b.a
Midas cichlid	MODERN SPECIES	30												ENSACIG00000004485	TAAR1 (ENSACIG00000004473)	ENSACIG00000004464	st8sia1 (ENSACIG00000004454) #21	tnni1d (ENSACIG00000004357) #22	ENSACIG00000004347 #23	ENSACIG00000004327 #23	ENSACIG00000004278 #24	SLC6A12 (ENSACIG00000004250) #25	PARP11 (ENSACIG00000004234) #26	PARP11 (ENSACIG00000004172) #27	tmtc2a (ENSACIG00000004134) #28	mettl25 (ENSACIG00000004095) #29	ccdc59 (ENSACIG00000004060) #30	CRACR2A (ENSACIG00000004009) #31	prmt8b (ENSACIG00000003983) #32	ENSACIG00000003975 #33	tspan11 (ENSACIG00000003904) #34	sema3aa (ENSACIG00000003852) #35	ENSACIG00000003840
Pseudocrenilabrinae	ANCESTRAL SPECIES	21	ENSGT00390000006086	ENSGT00390000004852.a.b	ENSGT00390000006835	ENSGT01050000244850.B	ENSGT00390000000903.a.i	ENSGT00390000001439	ENSGT00940000157992	ENSGT00940000153769.E	ENSGT00940000162238.a.b	ENSGT01030000234814	ENSGT00940000160568	ENSGT00390000016313.a.a	ENSGT00510000047602	ENSGT00940000154527.a.a.b.a	ENSGT01030000234535.D #21	ENSGT01030000234588.b.b.a.b #22	ENSGT00940000155908.a #23	ENSGT00940000165002 #24	ENSGT00940000161075 #25	ENSGT00940000156857.b #26	ENSGT00940000156857.a.o.b #27	ENSGT00940000156144.a.b #28	ENSGT00530000063745.b #29	ENSGT00390000006546 #30	ENSGT00440000033504.B.b #31	ENSGT00940000155867.a.b #32	ENSGT01040000240400.c.b.a.a.b #33	ENSGT00940000161249 #34	ENSGT00940000167336 #35	ENSGT00620000087961.a.b.a.b.a	ENSGT00940000155209.mb
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	10	ENSGT00390000004852.a.b	ENSGT00390000006835	ENSGT00940000176839.c.b.a.a	ENSGT01050000244850.B	ENSGT00390000000903.a.i	ENSGT00390000001439	ENSGT00940000157992	ENSGT00940000153769.E	ENSGT00940000162238.a.b	ENSGT01030000234814	ENSGT00940000160568	ENSGT00390000016313.a.a	ENSGT00510000047602	ENSGT00940000154527.a.a.b.a	ENSGT01030000234535.D #21	ENSGT01030000234588.b.b.a.b #22	ENSGT00940000155908.a #23	ENSGT00940000165002 #24	ENSGT00940000161075 #25	ENSGT00940000156857.b #26	ENSGT00940000156857.a.o.b #27	ENSGT00940000156144.a.b #28	ENSGT00530000063745.b #29	ENSGT00390000006546 #30	ENSGT00440000033504.B.b #31	ENSGT00940000155867.a.b #32	ENSGT01040000240400.c.b.a.a.b #33	ENSGT00940000161249 #34	ENSGT00940000167336 #35	ENSGT00620000087961.a.b.a.b.a	ENSGT00940000155209.mb
Haplochromini	ANCESTRAL SPECIES	9	ENSGT00390000004852.a.b	ENSGT00390000006835	ENSGT00940000176839.c.b.a.a	ENSGT01050000244850.B	ENSGT00390000000903.a.i	ENSGT00390000001439	ENSGT00940000157992	ENSGT00940000153769.E	ENSGT00940000162238.a.b	ENSGT01030000234814	ENSGT00940000160568	ENSGT00390000016313.a.a	ENSGT00510000047602	ENSGT00940000154527.a.a.b.a	ENSGT01030000234535.D #21	ENSGT01030000234588.b.b.a.b #22	ENSGT00940000155908.a #23	ENSGT00940000165002 #24	ENSGT00940000161075 #25	ENSGT00940000156857.b #26	ENSGT00940000156857.a.o.b.a #27	ENSGT00940000156144.a.b #28	ENSGT00530000063745.b #29	ENSGT00390000006546 #30	ENSGT00440000033504.B.b #31	ENSGT00940000155867.a.b #32	ENSGT01040000240400.c.b.a.a.b #33	ENSGT00940000161249 #34	ENSGT00940000167336 #35	ENSGT00620000087961.a.b.a.b.a	ENSGT00940000155209.mb
Burton s mouthbrooder	MODERN SPECIES	385															st8sia1 (ENSHBUG00000018398) #21	tnni1d (ENSHBUG00000018415) #22	ENSHBUG00000018459 #23	ENSHBUG00000018480 #24	ENSHBUG00000018571 #25	PARP11 (ENSHBUG00000018582) #26	ENSHBUG00000001054 #27	ENSHBUG00000018628 #27	tmtc2a (ENSHBUG00000018695) #28	mettl25 (ENSHBUG00000018706) #29	ccdc59 (ENSHBUG00000018713) #30	CRACR2A (ENSHBUG00000018719) #31	prmt8b (ENSHBUG00000018781) #32	ENSHBUG00000018789 #33	tspan11 (ENSHBUG00000018804) #34	sema3aa (ENSHBUG00000018911) #35	ENSHBUG00000019024
Haplochromini_A	ANCESTRAL SPECIES	9	ENSGT00390000006086	ENSGT00390000004852.a.b	ENSGT00390000006835	ENSGT00940000176839.c.b.a.a	ENSGT01050000244850.B	ENSGT00390000000903.a.i	ENSGT00390000001439	ENSGT00940000157992	ENSGT00940000153769.E	ENSGT01030000234814	ENSGT00940000160568	ENSGT00390000016313.a.a	ENSGT00510000047602	ENSGT00940000154527.a.a.b.a	ENSGT01030000234535.D #21	ENSGT01030000234588.b.b.a.b #22	ENSGT00940000155908.a #23	ENSGT00940000165002 #24	ENSGT00940000161075 #25	ENSGT00940000156857.b #26	ENSGT00940000156857.a.o.b.a #27	ENSGT00940000156144.a.b #28	ENSGT00530000063745.b #29	ENSGT00390000006546 #30	ENSGT00440000033504.B.b #31	ENSGT00940000155867.a.b #32	ENSGT01040000240400.c.b.a.a.b #33	ENSGT00940000161249 #34	ENSGT00940000167336 #35	ENSGT00620000087961.a.b.a.b.a	ENSGT00940000155209.mb
P. nyererei	MODERN SPECIES	347	zc3hc1 (ENSPNYG00000020692)	ube2h (ENSPNYG00000020704)	nrf1 (ENSPNYG00000020736)	ENSPNYG00000020764	plxna4 (ENSPNYG00000020783)	chchd3a (ENSPNYG00000020870)	exoc4 (ENSPNYG00000020878)	LRGUK (ENSPNYG00000020932)	ENSPNYG00000020982	ENSPNYG00000021049	copg2 (ENSPNYG00000021066)	mest (ENSPNYG00000021121)	ENSPNYG00000021169	ENSPNYG00000021235	st8sia1 (ENSPNYG00000021259) #21	tnni1d (ENSPNYG00000000356) #22	ENSPNYG00000000366 #23	ENSPNYG00000000370 #23	ENSPNYG00000000381 #24	ENSPNYG00000000405 #25	PARP11 (ENSPNYG00000000430) #26	ENSPNYG00000000440 #27	tmtc2a (ENSPNYG00000000525) #28	ENSPNYG00000000545 ##28	mettl25 (ENSPNYG00000000557) #29	ccdc59 (ENSPNYG00000000586) #30	CRACR2A (ENSPNYG00000000606) #31	prmt8b (ENSPNYG00000000641) #32	ENSPNYG00000000666 #33	tspan11 (ENSPNYG00000000682) #34	sema3aa (ENSPNYG00000000710) #35
Haplochromini_B	ANCESTRAL SPECIES	11	ENSGT00390000006086	ENSGT00390000004852.a.b	ENSGT00390000006835	ENSGT00940000176839.c.b.a.a	ENSGT01050000244850.B	ENSGT00390000000903.a.i	ENSGT00390000001439	ENSGT00940000157992	ENSGT00940000153769.E	ENSGT01030000234814	ENSGT00940000160568	ENSGT00390000016313.a.a	ENSGT00510000047602	ENSGT00940000154527.a.a.b.a	ENSGT01030000234535.D #21	ENSGT01030000234588.b.b.a.b #22	ENSGT00940000155908.a #23	ENSGT00940000165002 #24	ENSGT00940000161075 #25	ENSGT00940000156857.b #26	ENSGT00940000156857.a.o.b.a #27	ENSGT00940000156144.a.b #28	ENSGT00530000063745.b #29	ENSGT00390000006546 #30	ENSGT00440000033504.B.b #31	ENSGT00940000155867.a.b #32	ENSGT01040000240400.c.b.a.a.b #33	ENSGT00940000161249 #34	ENSGT00940000167336 #35	ENSGT00620000087961.a.b.a.b.a	ENSGT00940000155209.mb
Zebra mbuna	MODERN SPECIES	1099	zc3hc1 (ENSMZEG00005007142)	ube2h (ENSMZEG00005007122)	nrf1 (ENSMZEG00005007066)	ENSMZEG00005007055	plxna4 (ENSMZEG00005007001)	chchd3a (ENSMZEG00005006981)	exoc4 (ENSMZEG00005006892)	LRGUK (ENSMZEG00005006844)	ENSMZEG00005006784	ENSMZEG00005006765	ucn3l (ENSMZEG00005006758)	copg2 (ENSMZEG00005006704)	mest (ENSMZEG00005006655)	ENSMZEG00005006570	st8sia1 (ENSMZEG00005006535) #21	tnni1d (ENSMZEG00005006511) #22	ENSMZEG00005006505 #23	ENSMZEG00005006465 #23	ENSMZEG00005006403 #24	ENSMZEG00005006337 #25	PARP11 (ENSMZEG00005006306) #26	ENSMZEG00005006075 #27	ENSMZEG00005006055 #27	tmtc2a (ENSMZEG00005006025) #28	mettl25 (ENSMZEG00005006005) #29	ccdc59 (ENSMZEG00005005994) #30	CRACR2A (ENSMZEG00005005975) #31	prmt8b (ENSMZEG00005005938) #32	ENSMZEG00005005929 #33	tspan11 (ENSMZEG00005005904) #34	sema3aa (ENSMZEG00005005876) #35
Eastern happy	MODERN SPECIES	8	ube2h (ENSACLG00000024995)	nrf1 (ENSACLG00000024955)	ENSACLG00000024952	ENSACLG00000024951	plxna4 (ENSACLG00000024922)	chchd3a (ENSACLG00000024787)	exoc4 (ENSACLG00000024651)	LRGUK (ENSACLG00000024536)	ENSACLG00000024488	ENSACLG00000024453	ucn3l (ENSACLG00000024441)	copg2 (ENSACLG00000024328)	mest (ENSACLG00000024403)	ENSACLG00000024275	st8sia1 (ENSACLG00000024261) #21	tnni1d (ENSACLG00000024062) #22	ENSACLG00000024005 #23	ENSACLG00000023980 #24	ENSACLG00000023921 #25	PARP11 (ENSACLG00000023902) #26	ENSACLG00000023893 #27	ENSACLG00000023877	ENSACLG00000023809 #27	tmtc2a (ENSACLG00000023776) #28	ccdc59 (ENSACLG00000023759) #30	mettl25 (ENSACLG00000023704) #29	CRACR2A (ENSACLG00000023670) #31	prmt8b (ENSACLG00000023620) #32	ENSACLG00000023608 #33	tspan11 (ENSACLG00000023552) #34	sema3aa (ENSACLG00000023484) #35
Lyretail cichlid	MODERN SPECIES	291	ube2h (ENSNBRG00000004594)	nrf1 (ENSNBRG00000004629)	ENSNBRG00000004671	plxna4 (ENSNBRG00000004689)	chchd3a (ENSNBRG00000004791)	exoc4 (ENSNBRG00000004823)	LRGUK (ENSNBRG00000004908)	ENSNBRG00000005040	ENSNBRG00000005166	ucn3l (ENSNBRG00000005178)	copg2 (ENSNBRG00000005201)	mest (ENSNBRG00000005273)	ENSNBRG00000005303	ENSNBRG00000005361	st8sia1 (ENSNBRG00000005372) #21	tnni1d (ENSNBRG00000005403) #22	ENSNBRG00000005424 #23	ENSNBRG00000005478 #24	ENSNBRG00000005629 #25	PARP11 (ENSNBRG00000005665) #26	ENSNBRG00000005708 #27	tmtc2a (ENSNBRG00000005847) #28	mettl25 (ENSNBRG00000005885) #29	CRACR2A (ENSNBRG00000005924) #31	prmt8b (ENSNBRG00000005971) #32	ENSNBRG00000005998 #33	tspan11 (ENSNBRG00000006004) #34	sema3aa (ENSNBRG00000006039) #35	ENSNBRG00000006103	ENSNBRG00000006276	hgfa (ENSNBRG00000006504)
Nile tilapia	MODERN SPECIES	8	zc3hc1 (ENSONIG00000011644)	ube2h (ENSONIG00000011642)	nrf1 (ENSONIG00000011640)	plxna4 (ENSONIG00000011623)	chchd3a (ENSONIG00000011620)	exoc4 (ENSONIG00000011612)	LRGUK (ENSONIG00000011607)	ENSONIG00000011602	ENSONIG00000035512	ucn3l (ENSONIG00000020521)	copg2 (ENSONIG00000011594)	mest (ENSONIG00000033116)	ENSONIG00000011583	ENSONIG00000038584	st8sia1 (ENSONIG00000011579) #21	tnni1d (ENSONIG00000010778) #22	ENSONIG00000011571 #23	ENSONIG00000011569 #24	ENSONIG00000011558 #25	PARP11 (ENSONIG00000039090) #26	ENSONIG00000011552 #27	tmtc2a (ENSONIG00000011550) #28	mettl25 (ENSONIG00000011546) #29	ccdc59 (ENSONIG00000011545) #30	CRACR2A (ENSONIG00000011543) #31	prmt8b (ENSONIG00000011541) #32	ENSONIG00000020520 #33	tspan11 (ENSONIG00000011539) #34	sema3aa (ENSONIG00000011531) #35	ENSONIG00000011526	cacna2d1a (ENSONIG00000011520)