Bilateria	ANCESTRAL SPECIES																	ENSGT00390000013443 #22
Chordata	ANCESTRAL SPECIES																	ENSGT00390000013443 #22
Vertebrata	DUPLICATION
Vertebrata	ANCESTRAL SPECIES																	ENSGT00390000013443.c #22
Gnathostomata	ANCESTRAL SPECIES	562																ENSGT00390000013443.c #22	ENSGT00940000159869 #23	ENSGT00940000160550 #24	ENSGT00940000161143 #25	ENSGT00940000175590	ENSGT01050000244887.A.a.a.b #31
Euteleostomi	ANCESTRAL SPECIES	1413																ENSGT00390000013443.c #22	ENSGT00940000170960
Sarcopterygii	ANCESTRAL SPECIES	1198																ENSGT00390000013443.c #22	ENSGT00940000170960
Tetrapoda	ANCESTRAL SPECIES	45	ENSGT00940000155764.C #8	ENSGT00530000063679.B #9	ENSGT00940000166551	ENSGT00940000163421	ENSGT00940000156719 #11	ENSGT00940000158178 #13	ENSGT00900000143551	ENSGT00940000159089 #14	ENSGT00940000159801.B #15	ENSGT00390000005605 #16	ENSGT00530000063000.a.a.b #17	ENSGT01050000244887.A.a.a.a #18	ENSGT00940000159543 #19	ENSGT00390000005584	ENSGT00940000159788.b #21	ENSGT00390000013443.c #22	ENSGT00940000159869 #23	ENSGT00940000160550 #24	ENSGT00940000161143 #25	ENSGT00470000042444 #26	ENSGT00940000159005	ENSGT00390000014512 #30	ENSGT01050000244887.A.a.a.b #31	ENSGT00390000005100 #33	ENSGT00510000047802 #34	ENSGT01030000234518.C.a.a	ENSGT00530000064158 #35	ENSGT00940000160969 #36	ENSGT00390000005065 #37	ENSGT00940000155412.b	ENSGT00940000154535.C
Amniota	ANCESTRAL SPECIES	31	ENSGT00940000155764.C #8	ENSGT00530000063679.B #9	ENSGT00940000166551	ENSGT00940000163421	ENSGT00940000156719 #11	ENSGT00940000158178 #13	ENSGT00940000159089 #14	ENSGT00940000159801.B #15	ENSGT00390000005605 #16	ENSGT00950000182923.A	ENSGT00530000063000.a.a.b #17	ENSGT01050000244887.A.a.a.a #18	ENSGT00940000159543 #19	ENSGT00390000005584	ENSGT00940000159788.b #21	ENSGT00390000013443.c #22	ENSGT00940000159869 #23	ENSGT00940000160550 #24	ENSGT00940000161143 #25	ENSGT00470000042444 #26	ENSGT00940000159005	ENSGT00390000014512 #30	ENSGT01050000244887.A.a.a.b #31	ENSGT00940000172524	ENSGT00390000005100 #33	ENSGT00510000047802 #34	ENSGT01030000234518.C.a.a	ENSGT00530000064158 #35	ENSGT00940000160969 #36	ENSGT00390000005065 #37	ENSGT00940000155412.b
Mammalia	ANCESTRAL SPECIES	42	ENSGT00940000160377	ENSGT00390000008862	ENSGT00940000158445 #7	ENSGT00940000155764.C #8	ENSGT00530000063679.B #9	ENSGT00940000163421	ENSGT00940000156719 #11	ENSGT00940000158178 #13	ENSGT00940000159089 #14	ENSGT00940000159801.B #15	ENSGT00390000005605 #16	ENSGT00530000063000.a.a.b #17	ENSGT01050000244887.A.a.a.a #18	ENSGT00940000159543 #19	ENSGT00940000159788.b #21	ENSGT00390000013443.c #22	ENSGT00940000159869 #23	ENSGT00940000160550 #24	ENSGT00940000161143 #25	ENSGT00470000042444 #26	ENSGT00940000159005	ENSGT00390000014512 #30	ENSGT01050000244887.A.a.a.b #31	ENSGT00940000172524	ENSGT00390000005100 #33	ENSGT00510000047802 #34	ENSGT01030000234518.C.a.a	ENSGT00530000064158 #35	ENSGT00940000160969 #36	ENSGT00390000005065 #37	ENSGT00940000155412.b
Theria	ANCESTRAL SPECIES	29	ENSGT00940000160377	ENSGT00390000008862	ENSGT00940000158445 #7	ENSGT00940000155764.C #8	ENSGT00530000063679.B #9	ENSGT00940000163421	ENSGT00940000156719 #11	ENSGT00940000158178 #13	ENSGT00940000159089 #14	ENSGT00940000159801.B #15	ENSGT00390000005605 #16	ENSGT00530000063000.a.a.b #17	ENSGT01050000244887.A.a.a.a #18	ENSGT00940000159543 #19	ENSGT00940000159788.b #21	ENSGT00390000013443.c #22	ENSGT00940000159869 #23	ENSGT00940000159005	ENSGT00940000160550 #24	ENSGT00940000161143 #25	ENSGT00470000042444 #26	ENSGT00940000162184 #27	ENSGT00940000162431 #28	ENSGT00390000014512 #30	ENSGT01050000244887.A.a.a.b #31	ENSGT00940000172524	ENSGT00390000005100 #33	ENSGT00510000047802 #34	ENSGT01030000234518.C.a.a	ENSGT00530000064158 #35	ENSGT00940000160969 #36
Eutheria	ANCESTRAL SPECIES	27	ENSGT00390000010157.b	ENSGT00940000160377	ENSGT00390000008862	ENSGT00940000158445 #7	ENSGT00940000155764.C #8	ENSGT00530000063679.B #9	ENSGT00940000156719 #11	ENSGT00940000158178 #13	ENSGT00940000159089 #14	ENSGT00940000159801.B #15	ENSGT00390000005605 #16	ENSGT00530000063000.a.a.b #17	ENSGT01050000244887.A.a.a.a #18	ENSGT00940000159543 #19	ENSGT00940000159788.b #21	ENSGT00390000013443.c #22	ENSGT00940000159869 #23	ENSGT00940000159005	ENSGT00940000160550 #24	ENSGT00940000161143 #25	ENSGT00470000042444 #26	ENSGT00940000162184 #27	ENSGT00940000162431 #28	ENSGT00940000162311 #29	ENSGT00390000014512 #30	ENSGT01050000244887.A.a.a.b #31	ENSGT00940000172524	ENSGT00390000005100 #33	ENSGT00510000047802 #34	ENSGT01030000234518.C.a.a	ENSGT00530000064158 #35
Boreoeutheria	ANCESTRAL SPECIES	18	ENSGT00940000160377	ENSGT00390000008862	ENSGT00940000158445 #7	ENSGT00940000155764.C #8	ENSGT00530000063679.B #9	ENSGT00940000156719 #11	ENSGT00900000143551	ENSGT00940000158178 #13	ENSGT00940000159089 #14	ENSGT00940000159801.B #15	ENSGT00390000005605 #16	ENSGT00530000063000.a.a.b #17	ENSGT01050000244887.A.a.a.a #18	ENSGT00940000159543 #19	ENSGT00940000159788.b #21	ENSGT00390000013443.c #22	ENSGT00940000159869 #23	ENSGT00940000159005	ENSGT00940000160550 #24	ENSGT00940000161143 #25	ENSGT00470000042444 #26	ENSGT00940000162184 #27	ENSGT00940000162431 #28	ENSGT00940000162311 #29	ENSGT00390000014512 #30	ENSGT01050000244887.A.a.a.b #31	ENSGT00940000172524	ENSGT00390000005100 #33	ENSGT00510000047802 #34	ENSGT01030000234518.C.a.a	ENSGT00530000064158 #35
Euarchontoglires	ANCESTRAL SPECIES	18	ENSGT00940000160377	ENSGT00390000008862	ENSGT00940000158445 #7	ENSGT00940000155764.C #8	ENSGT00530000063679.B #9	ENSGT00940000156719 #11	ENSGT00900000143551	ENSGT00940000158178 #13	ENSGT00940000159089 #14	ENSGT00940000159801.B #15	ENSGT00390000005605 #16	ENSGT00530000063000.a.a.b #17	ENSGT01050000244887.A.a.a.a #18	ENSGT00940000159543 #19	ENSGT00940000159788.b #21	ENSGT00390000013443.c #22	ENSGT00940000159869 #23	ENSGT00940000159005	ENSGT00940000160550 #24	ENSGT00940000161143 #25	ENSGT00470000042444 #26	ENSGT00940000162184 #27	ENSGT00940000162431 #28	ENSGT00940000162311 #29	ENSGT00390000014512 #30	ENSGT01050000244887.A.a.a.b #31	ENSGT00940000172524	ENSGT00390000005100 #33	ENSGT00510000047802 #34	ENSGT01030000234518.C.a.a	ENSGT00530000064158 #35
Primates	ANCESTRAL SPECIES	18	ENSGT00940000160377	ENSGT00390000008862	ENSGT00940000158445 #7	ENSGT00940000155764.C #8	ENSGT00530000063679.B #9	ENSGT00940000156719 #11	ENSGT00900000143551	ENSGT00940000158178 #13	ENSGT00940000159089 #14	ENSGT00940000159801.B #15	ENSGT00390000005605 #16	ENSGT00530000063000.a.a.b #17	ENSGT01050000244887.A.a.a.a #18	ENSGT00940000159543 #19	ENSGT00940000159788.b #21	ENSGT00390000013443.c #22	ENSGT00940000159869 #23	ENSGT00940000159005	ENSGT00940000160550 #24	ENSGT00940000161143 #25	ENSGT00470000042444 #26	ENSGT00940000162184 #27	ENSGT00940000162431 #28	ENSGT00940000162311 #29	ENSGT00390000014512 #30	ENSGT01050000244887.A.a.a.b #31	ENSGT00940000172524	ENSGT00390000005100 #33	ENSGT00510000047802 #34	ENSGT01030000234518.C.a.a	ENSGT00530000064158 #35
Haplorrhini	ANCESTRAL SPECIES	14	ENSGT00940000160377	ENSGT00390000008862	ENSGT00940000158445 #7	ENSGT00940000155764.C #8	ENSGT00530000063679.B #9	ENSGT00940000156719 #11	ENSGT00900000143551	ENSGT00940000158178 #13	ENSGT00940000159089 #14	ENSGT00940000159801.B #15	ENSGT00390000005605 #16	ENSGT00530000063000.a.a.b #17	ENSGT01050000244887.A.a.a.a #18	ENSGT00940000159543 #19	ENSGT00940000159788.b #21	ENSGT00390000013443.c #22	ENSGT00940000159869 #23	ENSGT00940000159005	ENSGT00940000160550 #24	ENSGT00940000161143 #25	ENSGT00470000042444 #26	ENSGT00940000162184 #27	ENSGT00940000162431 #28	ENSGT00940000162311 #29	ENSGT00390000014512 #30	ENSGT01050000244887.A.a.a.b #31	ENSGT00940000172524	ENSGT00390000005100 #33	ENSGT00510000047802 #34	ENSGT01030000234518.C.a.a	ENSGT00530000064158 #35
Simiiformes	DUPLICATION
Simiiformes	DUPLICATION
Simiiformes	ANCESTRAL SPECIES	13	ENSGT00940000160377	ENSGT00390000008862	ENSGT00940000158445 #7	ENSGT00940000155764.C #8	ENSGT00530000063679.B #9	ENSGT00940000156719 #11	ENSGT00900000143551	ENSGT00940000158178 #13	ENSGT00940000159089 #14	ENSGT00940000159801.B #15	ENSGT00390000005605 #16	ENSGT00530000063000.a.a.b #17	ENSGT01050000244887.A.a.a.a #18	ENSGT00940000159543 #19	ENSGT00940000159788.b #21	ENSGT00390000013443.c.e.b #22	ENSGT00940000159869 #23	ENSGT00910000147865	ENSGT00940000159005	ENSGT00940000160550 #24	ENSGT00940000161143 #25	ENSGT00470000042444 #26	ENSGT00940000162184 #27	ENSGT00940000162431 #28	ENSGT00940000162311 #29	ENSGT00390000014512 #30	ENSGT01050000244887.A.a.a.b #31	ENSGT00940000172524	ENSGT00390000005100 #33	ENSGT00510000047802 #34	ENSGT01030000234518.C.a.a
Catarrhini	ANCESTRAL SPECIES		ENSGT00940000160377	ENSGT00390000008862	ENSGT00940000158445 #7	ENSGT00940000155764.C #8	ENSGT00530000063679.B #9	ENSGT00940000156719 #11	ENSGT00900000143551	ENSGT00940000158178 #13	ENSGT00940000159089 #14	ENSGT00940000159801.B #15	ENSGT00390000005605 #16	ENSGT00530000063000.a.a.b #17	ENSGT01050000244887.A.a.a.a #18	ENSGT00940000159543 #19	ENSGT00940000159788.b #21	ENSGT00390000013443.c.e.b #22	ENSGT00940000159869 #23	ENSGT00910000147270	ENSGT00940000159005	ENSGT00940000160550 #24	ENSGT00940000161143 #25	ENSGT00470000042444 #26	ENSGT00940000162184 #27	ENSGT00940000162431 #28	ENSGT00940000162311 #29	ENSGT00390000014512 #30	ENSGT01050000244887.A.a.a.b #31	ENSGT00940000172524	ENSGT00390000005100 #33	ENSGT00510000047802 #34	ENSGT01030000234518.C.a.a
Cercopithecidae	ANCESTRAL SPECIES	17	ENSGT00390000008862	ENSGT00940000158445 #7	ENSGT00940000155764.C #8	ENSGT00530000063679.B #9	ENSGT00940000156719 #11	ENSGT01100000264612	ENSGT00940000158178 #13	ENSGT00900000143551	ENSGT00940000159089 #14	ENSGT00940000159801.B #15	ENSGT00390000005605 #16	ENSGT00530000063000.a.a.b #17	ENSGT01050000244887.A.a.a.a #18	ENSGT00940000159543 #19	ENSGT00940000159788.b #21	ENSGT00390000013443.c.e.b #22	ENSGT00940000159869 #23	ENSGT00910000147270	ENSGT00940000159005	ENSGT00940000160550 #24	ENSGT00940000161143 #25	ENSGT00470000042444 #26	ENSGT00940000162184 #27	ENSGT00940000162431 #28	ENSGT00940000162311 #29	ENSGT00390000014512 #30	ENSGT01050000244887.A.a.a.b #31	ENSGT00940000172524	ENSGT00390000005100 #33	ENSGT00510000047802 #34	ENSGT01030000234518.C.a.a
Cercopithecinae	ANCESTRAL SPECIES	1	ENSGT00940000160377	ENSGT00390000008862	ENSGT00940000158445 #7	ENSGT00940000155764.C #8	ENSGT00530000063679.B #9	ENSGT00940000156719 #11	ENSGT00900000143551	ENSGT00940000158178 #13	ENSGT00940000159089 #14	ENSGT00940000159801.B #15	ENSGT00390000005605 #16	ENSGT00530000063000.a.a.b #17	ENSGT01050000244887.A.a.a.a #18	ENSGT00940000159543 #19	ENSGT00940000159788.b #21	ENSGT00390000013443.c.e.b #22	ENSGT00940000159869 #23	ENSGT00910000147270	ENSGT00940000159005	ENSGT00940000160550 #24	ENSGT00940000161143 #25	ENSGT00470000042444 #26	ENSGT00940000162184 #27	ENSGT00940000162431 #28	ENSGT00940000162311 #29	ENSGT00390000014512 #30	ENSGT01050000244887.A.a.a.b #31	ENSGT00390000005100 #33	ENSGT00510000047802.q.a #34	ENSGT01030000234518.C.a.a	ENSGT00530000064158 #35
Cercopithecinae_a	ANCESTRAL SPECIES	3	ENSGT00940000160377	ENSGT00390000008862	ENSGT00940000158445 #7	ENSGT00940000155764.C #8	ENSGT00530000063679.B #9	ENSGT00940000156719 #11	ENSGT00900000143551	ENSGT00940000158178 #13	ENSGT00940000159089 #14	ENSGT00940000159801.B #15	ENSGT00390000005605 #16	ENSGT00530000063000.a.a.b #17	ENSGT01050000244887.A.a.a.a #18	ENSGT00940000159543 #19	ENSGT00940000159788.b #21	ENSGT00390000013443.c.e.b #22	ENSGT00940000159869 #23	ENSGT00910000147270	ENSGT00910000147865	ENSGT00940000159005	ENSGT00940000160550 #24	ENSGT00940000161143 #25	ENSGT00470000042444 #26	ENSGT00940000162184 #27	ENSGT00940000162431 #28	ENSGT00940000162311 #29	ENSGT00390000014512 #30	ENSGT01050000244887.A.a.a.b #31	ENSGT00390000005100 #33	ENSGT00510000047802.q.a #34	ENSGT00510000047802.r ##34
Macaca	ANCESTRAL SPECIES	21	ENSGT00940000160377	ENSGT00390000008862	ENSGT00940000158445 #7	ENSGT00940000155764.C #8	ENSGT00530000063679.B #9	ENSGT00940000156719 #11	ENSGT00940000158178 #13	ENSGT00900000143551	ENSGT00940000159089 #14	ENSGT00940000159801.B #15	ENSGT00390000005605 #16	ENSGT00530000063000.a.a.b #17	ENSGT01050000244887.A.a.a.a #18	ENSGT00940000159543 #19	ENSGT00940000159788.b #21	ENSGT00390000013443.c.e.b #22	ENSGT00940000159869 #23	ENSGT00940000159005	ENSGT00910000147270	ENSGT00910000147865	ENSGT00940000160550 #24	ENSGT00940000161143 #25	ENSGT00470000042444 #26	ENSGT00940000162184 #27	ENSGT00940000162431 #28	ENSGT00940000162311 #29	ENSGT00390000014512 #30	ENSGT01050000244887.A.a.a.b #31	ENSGT00390000005100 #33	ENSGT00510000047802.q.a #34	ENSGT01030000234518.C.a.a
Macaca_a	ANCESTRAL SPECIES	1	ENSGT00390000010157.b	ENSGT00940000160377	ENSGT00390000008862	ENSGT00940000158445 #7	ENSGT00940000155764.C #8	ENSGT00530000063679.B #9	ENSGT00940000156719 #11	ENSGT00940000158178 #13	ENSGT00940000159089 #14	ENSGT00940000159801.B #15	ENSGT00390000005605 #16	ENSGT00530000063000.a.a.b #17	ENSGT01050000244887.A.a.a.a #18	ENSGT00940000159543 #19	ENSGT00940000159788.b #21	ENSGT00390000013443.c.e.b #22	ENSGT00940000159869 #23	ENSGT00910000147865	ENSGT00940000160550 #24	ENSGT00940000161143 #25	ENSGT00470000042444 #26	ENSGT00940000162184 #27	ENSGT00940000162431 #28	ENSGT00940000162311 #29	ENSGT00390000014512 #30	ENSGT01050000244887.A.a.a.b #31	ENSGT00390000005100 #33	ENSGT00510000047802.q.a #34	ENSGT00530000064158 #35	ENSGT00940000160969 #36	ENSGT00390000005065 #37
Rhesus	MODERN SPECIES	10	TMED1 (ENSMMUG00000055775) #7	DNM2 (ENSMMUG00000014677) #8	QTRT1 (ENSMMUG00000028882) #9	ENSMMUG00000053725 #10	ILF3 (ENSMMUG00000014673) #11	ENSMMUG00000060522 #12	SLC44A2 (ENSMMUG00000003744) #13	AP1M2 (ENSMMUG00000016593) #14	CDKN2D (ENSMMUG00000011953) #15	KRI1 (ENSMMUG00000011951) #16	ATG4D (ENSMMUG00000046883) #17	S1PR5 (ENSMMUG00000008686) #18	KEAP1 (ENSMMUG00000005218) #19	ENSMMUG00000059305 #20	PDE4A (ENSMMUG00000016122) #21	CDC37 (ENSMMUG00000003111) #22	TYK2 (ENSMMUG00000003110) #23	RAVER1 (ENSMMUG00000014897) #24	FDX2 (ENSMMUG00000059073) #25	ZGLP1 (ENSMMUG00000050415) #26	ICAM5 (ENSMMUG00000040746) #27	ICAM4 (ENSMMUG00000009343) #28	ICAM1 (ENSMMUG00000014896) #29	MRPL4 (ENSMMUG00000001219) #30	S1PR2 (ENSMMUG00000006586) #31	ENSMMUG00000058342 #32	DNMT1 (ENSMMUG00000014604) #33	EIF3G (ENSMMUG00000017217) #34	PPAN (ENSMMUG00000017211) #35	ANGPTL6 (ENSMMUG00000042707) #36	SHFL (ENSMMUG00000018138) #37
Crab-eating macaque	MODERN SPECIES	10	YIPF2 (ENSMFAG00000039576)	CARM1 (ENSMFAG00000036898)	C19orf38 (ENSMFAG00000003956)	TMED1 (ENSMFAG00000045362) #7	DNM2 (ENSMFAG00000045986) #8	QTRT1 (ENSMFAG00000044529) #9	ILF3 (ENSMFAG00000039557) #11	SLC44A2 (ENSMFAG00000035994) #13	AP1M2 (ENSMFAG00000002157) #14	CDKN2D (ENSMFAG00000032475) #15	KRI1 (ENSMFAG00000046360) #16	ATG4D (ENSMFAG00000036604) #17	ENSMFAG00000044391	KEAP1 (ENSMFAG00000054809) #19	PDE4A (ENSMFAG00000004722) #21	ENSMFAG00000037601 #22	TYK2 (ENSMFAG00000044770) #23	ENSMFAG00000062072	RAVER1 (ENSMFAG00000037977) #24	FDX2 (ENSMFAG00000043889) #25	ZGLP1 (ENSMFAG00000059142) #26	ICAM5 (ENSMFAG00000002910) #27	ICAM4 (ENSMFAG00000003379) #28	ICAM1 (ENSMFAG00000026825) #29	ENSMFAG00000059527 ##32	ENSMFAG00000063966	MRPL4 (ENSMFAG00000003526) #30	S1PR2 (ENSMFAG00000030545) #31	DNMT1 (ENSMFAG00000023786) #33	EIF3G (ENSMFAG00000003465) #34	PPAN (ENSMFAG00000042854) #35
Pig-tailed macaque	MODERN SPECIES	76	YIPF2 (ENSMNEG00000037912)	CARM1 (ENSMNEG00000031496)	C19orf38 (ENSMNEG00000043713)	TMED1 (ENSMNEG00000037169) #7	DNM2 (ENSMNEG00000029030) #8	QTRT1 (ENSMNEG00000031690) #9	ILF3 (ENSMNEG00000042707) #11	SLC44A2 (ENSMNEG00000044855) #13	ENSMNEG00000044028	AP1M2 (ENSMNEG00000042247) #14	CDKN2D (ENSMNEG00000033406) #15	KRI1 (ENSMNEG00000043431) #16	ATG4D (ENSMNEG00000043930) #17	KEAP1 (ENSMNEG00000041263) #19	PDE4A (ENSMNEG00000040163) #21	ENSMNEG00000036974 #22	TYK2 (ENSMNEG00000038855) #23	ICAM3 (ENSMNEG00000044562)	ENSMNEG00000036746	ENSMNEG00000028055	RAVER1 (ENSMNEG00000028390) #24	FDX2 (ENSMNEG00000031990) #25	ZGLP1 (ENSMNEG00000029422) #26	ICAM5 (ENSMNEG00000044080) #27	ICAM4 (ENSMNEG00000043426) #28	ICAM1 (ENSMNEG00000033129) #29	MRPL4 (ENSMNEG00000040746) #30	S1PR2 (ENSMNEG00000027107) #31	DNMT1 (ENSMNEG00000029351) #33	EIF3G (ENSMNEG00000029643) #34	P2RY11 (ENSMNEG00000019815)
Cercopithecinae_b	ANCESTRAL SPECIES	13	ENSGT00940000160377	ENSGT00390000008862	ENSGT00940000158445 #7	ENSGT00940000155764.C #8	ENSGT00530000063679.B #9	ENSGT00940000156719 #11	ENSGT00900000143551	ENSGT00940000158178 #13	ENSGT00940000159089 #14	ENSGT00940000159801.B #15	ENSGT00390000005605 #16	ENSGT00530000063000.a.a.b #17	ENSGT01050000244887.A.a.a.a #18	ENSGT00940000159543 #19	ENSGT00940000159788.b #21	ENSGT00390000013443.c.e.b #22	ENSGT00940000159869 #23	ENSGT00910000147270	ENSGT00910000147865	ENSGT00940000159005	ENSGT00940000160550 #24	ENSGT00940000161143 #25	ENSGT00470000042444 #26	ENSGT00940000162184 #27	ENSGT00940000162431 #28	ENSGT00940000162311 #29	ENSGT00390000014512 #30	ENSGT01050000244887.A.a.a.b #31	ENSGT00390000005100 #33	ENSGT00510000047802.r ##34	ENSGT01030000234518.C.a.a
Olive baboon	MODERN SPECIES	12	TIMM29 (ENSPANG00000005370)	YIPF2 (ENSPANG00000003969)	CARM1 (ENSPANG00000021071)	C19orf38 (ENSPANG00000007431)	TMED1 (ENSPANG00000020664) #7	DNM2 (ENSPANG00000003166) #8	QTRT1 (ENSPANG00000014330) #9	ILF3 (ENSPANG00000014995) #11	SLC44A2 (ENSPANG00000004916) #13	CDKN2D (ENSPANG00000022407) #15	KRI1 (ENSPANG00000022951) #16	ATG4D (ENSPANG00000006123) #17	S1PR5 (ENSPANG00000047566) #18	KEAP1 (ENSPANG00000003566) #19	PDE4A (ENSPANG00000007730) #21	ENSPANG00000011043 #22	TYK2 (ENSPANG00000019963) #23	ICAM3 (ENSPANG00000011402)	FDX2 (ENSPANG00000035899) #25	ZGLP1 (ENSPANG00000005034) #26	ICAM5 (ENSPANG00000017123) #27	ICAM4 (ENSPANG00000011444) #28	ICAM1 (ENSPANG00000009752) #29	MRPL4 (ENSPANG00000001265) #30	S1PR2 (ENSPANG00000010514) #31	DNMT1 (ENSPANG00000001264) #33	PPAN (ENSPANG00000005948) #35	ANGPTL6 (ENSPANG00000008463) #36	SHFL (ENSPANG00000029871) #37	ENSPANG00000047295	COL5A3 (ENSPANG00000010734)
Cercopithecinae_d	ANCESTRAL SPECIES	8	ENSGT00390000010157.b	ENSGT00940000160377	ENSGT00390000008862	ENSGT00940000158445 #7	ENSGT00940000155764.C #8	ENSGT00530000063679.B #9	ENSGT00940000156719 #11	ENSGT00900000143551	ENSGT00940000158178 #13	ENSGT00940000159089 #14	ENSGT00940000159801.B #15	ENSGT00390000005605 #16	ENSGT00530000063000.a.a.b #17	ENSGT00940000159543 #19	ENSGT00940000159788.b #21	ENSGT00390000013443.c.e.b #22	ENSGT00940000159869 #23	ENSGT00910000147270	ENSGT00910000147865	ENSGT00940000159005	ENSGT00940000160550 #24	ENSGT00940000161143 #25	ENSGT00470000042444 #26	ENSGT00940000162184 #27	ENSGT00940000162431 #28	ENSGT00940000162311 #29	ENSGT00390000014512 #30	ENSGT01050000244887.A.a.a.b #31	ENSGT00390000005100 #33	ENSGT00510000047802.r ##34	ENSGT01030000234518.C.a.a
Sooty mangabey	MODERN SPECIES	347	YIPF2 (ENSCATG00000043294)	CARM1 (ENSCATG00000034760)	C19orf38 (ENSCATG00000034346)	TMED1 (ENSCATG00000036095) #7	DNM2 (ENSCATG00000038733) #8	QTRT1 (ENSCATG00000034798) #9	ILF3 (ENSCATG00000023258) #11	ENSCATG00000030523	SLC44A2 (ENSCATG00000043520) #13	AP1M2 (ENSCATG00000023909) #14	CDKN2D (ENSCATG00000029941) #15	KRI1 (ENSCATG00000035384) #16	ATG4D (ENSCATG00000043691) #17	KEAP1 (ENSCATG00000030706) #19	PDE4A (ENSCATG00000044053) #21	ENSCATG00000032331 #22	TYK2 (ENSCATG00000003840) #23	ENSCATG00000041337	ENSCATG00000021386	ICAM3 (ENSCATG00000041750)	RAVER1 (ENSCATG00000043863) #24	FDX2 (ENSCATG00000044778) #25	ZGLP1 (ENSCATG00000031603) #26	ICAM5 (ENSCATG00000043572) #27	ICAM4 (ENSCATG00000040339) #28	ICAM1 (ENSCATG00000036475) #29	ENSCATG00000033090	S1PR2 (ENSCATG00000018961) #31	DNMT1 (ENSCATG00000031001) #33	P2RY11 (ENSCATG00000041853)	EIF3G (ENSCATG00000031281) ##34
Drill	MODERN SPECIES	183	YIPF2 (ENSMLEG00000037234)	CARM1 (ENSMLEG00000006303)	C19orf38 (ENSMLEG00000013141)	TMED1 (ENSMLEG00000030440) #7	DNM2 (ENSMLEG00000031786) #8	QTRT1 (ENSMLEG00000023215) #9	ILF3 (ENSMLEG00000042847) #11	ENSMLEG00000028980	SLC44A2 (ENSMLEG00000044435) #13	AP1M2 (ENSMLEG00000022842) #14	ENSMLEG00000037445	KRI1 (ENSMLEG00000036224) #16	ATG4D (ENSMLEG00000038608) #17	KEAP1 (ENSMLEG00000036747) #19	PDE4A (ENSMLEG00000030983) #21	ENSMLEG00000018092 #22	TYK2 (ENSMLEG00000028554) #23	ENSMLEG00000017274	ICAM3 (ENSMLEG00000030442)	RAVER1 (ENSMLEG00000041959) #24	FDX2 (ENSMLEG00000042733) #25	ZGLP1 (ENSMLEG00000040681) #26	ICAM5 (ENSMLEG00000040636) #27	ICAM4 (ENSMLEG00000032689) #28	ICAM1 (ENSMLEG00000034670) #29	MRPL4 (ENSMLEG00000041712) #30	S1PR2 (ENSMLEG00000011240) #31	DNMT1 (ENSMLEG00000038693) #33	EIF3G (ENSMLEG00000035345) ##34	P2RY11 (ENSMLEG00000033084)	PPAN (ENSMLEG00000042991) #35
Vervet Monkey	MODERN SPECIES	25	TIMM29 (ENSCSAG00000006898)	YIPF2 (ENSCSAG00000006910)	CARM1 (ENSCSAG00000006939)	TMED1 (ENSCSAG00000006950) #7	DNM2 (ENSCSAG00000006956) #8	QTRT1 (ENSCSAG00000006976) #9	ILF3 (ENSCSAG00000006983) #11	SLC44A2 (ENSCSAG00000007045) #13	CDKN2D (ENSCSAG00000007080) #15	AP1M2 (ENSCSAG00000007087) #14	KRI1 (ENSCSAG00000007096) #16	ATG4D (ENSCSAG00000007103) #17	S1PR5 (ENSCSAG00000018836) #18	KEAP1 (ENSCSAG00000007107) #19	PDE4A (ENSCSAG00000007204) #21	ENSCSAG00000007234 #22	TYK2 (ENSCSAG00000007285) #23	RAVER1 (ENSCSAG00000007317) #24	FDX2 (ENSCSAG00000007325) #25	ZGLP1 (ENSCSAG00000007336) #26	ICAM5 (ENSCSAG00000007342) #27	ICAM4 (ENSCSAG00000007349) #28	ICAM1 (ENSCSAG00000007356) #29	MRPL4 (ENSCSAG00000007362) #30	S1PR2 (ENSCSAG00000018835) #31	DNMT1 (ENSCSAG00000007378) #33	ENSCSAG00000007406 #34	P2RY11 (ENSCSAG00000007416)	PPAN (ENSCSAG00000007423) #35	ANGPTL6 (ENSCSAG00000007427) #36	SHFL (ENSCSAG00000007434) #37
Rhinopithecus	ANCESTRAL SPECIES		ENSGT00940000160377	ENSGT00390000008862	ENSGT00940000158445 #7	ENSGT00940000155764.C #8	ENSGT00530000063679.B #9	ENSGT00940000156719 #11	ENSGT01100000264612	ENSGT00940000158178 #13	ENSGT00900000143551	ENSGT00940000159089 #14	ENSGT00940000159801.B #15	ENSGT00390000005605 #16	ENSGT00530000063000.a.a.b #17	ENSGT00940000159543 #19	ENSGT00940000159788.b #21	ENSGT00390000013443.c.e.b #22	ENSGT00940000159869 #23	ENSGT00940000159005	ENSGT00910000147865	ENSGT00940000160550 #24	ENSGT00940000161143 #25	ENSGT00470000042444 #26	ENSGT00940000162184 #27	ENSGT00940000162431 #28	ENSGT00940000162311 #29	ENSGT00390000014512 #30	ENSGT01050000244887.A.a.a.b #31	ENSGT00390000005100.l #33	ENSGT00510000047802 #34	ENSGT01030000234518.C.a.a	ENSGT00530000064158 #35
Black snub-nosed monkey	MODERN SPECIES	1802															PDE4A (ENSRBIG00000036253) #21	ENSRBIG00000037612 #22	TYK2 (ENSRBIG00000035551) #23	ICAM3 (ENSRBIG00000027976)	ENSRBIG00000043688	RAVER1 (ENSRBIG00000034702) #24	FDX2 (ENSRBIG00000027916) #25	ZGLP1 (ENSRBIG00000026249) #26
Golden snub-nosed monkey	MODERN SPECIES	1762	CARM1 (ENSRROG00000033867)	C19orf38 (ENSRROG00000031319)	TMED1 (ENSRROG00000026580) #7	DNM2 (ENSRROG00000041162) #8	QTRT1 (ENSRROG00000036578) #9	ILF3 (ENSRROG00000031702) #11	SLC44A2 (ENSRROG00000012407) #13	ENSRROG00000032176	ENSRROG00000004844	AP1M2 (ENSRROG00000036852) #14	CDKN2D (ENSRROG00000034268) #15	KRI1 (ENSRROG00000041397) #16	ATG4D (ENSRROG00000041650) #17	KEAP1 (ENSRROG00000041020) #19	PDE4A (ENSRROG00000029729) #21	ENSRROG00000030450 #22	TYK2 (ENSRROG00000030801) #23	ICAM3 (ENSRROG00000042281)	ENSRROG00000023550	RAVER1 (ENSRROG00000031186) #24	FDX2 (ENSRROG00000043177) #25	ZGLP1 (ENSRROG00000030601) #26	ICAM5 (ENSRROG00000040866) #27	ICAM4 (ENSRROG00000029024) #28	ICAM1 (ENSRROG00000032596) #29	MRPL4 (ENSRROG00000003982) #30	S1PR2 (ENSRROG00000008412) #31	ENSRROG00000038702 #33	EIF3G (ENSRROG00000033193) #34	P2RY11 (ENSRROG00000035428)	ENSRROG00000034660 #35
Platyrrhini	ANCESTRAL SPECIES	16	ENSGT00940000160377	ENSGT00390000008862.a	ENSGT00940000158445 #7	ENSGT00940000155764.C #8	ENSGT00530000063679.B #9	ENSGT00940000156719 #11	ENSGT00900000143551	ENSGT00940000158178 #13	ENSGT00940000159089.i #14	ENSGT00940000159801.B #15	ENSGT00390000005605 #16	ENSGT00530000063000.a.a.b #17	ENSGT01050000244887.A.a.a.a #18	ENSGT00940000159543 #19	ENSGT00940000159788.b #21	ENSGT00390000013443.c.e.b #22	ENSGT00940000159869 #23	ENSGT00910000147865	ENSGT00940000159005	ENSGT00940000160550 #24	ENSGT00940000161143 #25	ENSGT00470000042444 #26	ENSGT00940000162184 #27	ENSGT00940000162431 #28	ENSGT00940000162311 #29	ENSGT00390000014512 #30	ENSGT01050000244887.A.a.a.b #31	ENSGT00390000005100 #33	ENSGT00510000047802 #34	ENSGT01030000234518.C.a.a	ENSGT00530000064158 #35
Cebidae	ANCESTRAL SPECIES	20	ENSGT00940000160377	ENSGT00390000008862.a	ENSGT00940000158445 #7	ENSGT00940000155764.C #8	ENSGT00530000063679.B #9	ENSGT00940000156719 #11	ENSGT01100000264612	ENSGT00940000158178 #13	ENSGT00940000159089.i.a.a #14	ENSGT00940000159801.B #15	ENSGT00390000005605 #16	ENSGT00530000063000.a.a.b #17	ENSGT01050000244887.A.a.a.a #18	ENSGT00940000159543 #19	ENSGT00940000159788.b #21	ENSGT00390000013443.c.e.b #22	ENSGT00940000159869 #23	ENSGT00940000159005	ENSGT00940000160550 #24	ENSGT00940000161143 #25	ENSGT00470000042444 #26	ENSGT00940000162184 #27	ENSGT00940000162431 #28	ENSGT00940000162311 #29	ENSGT00390000014512 #30	ENSGT01050000244887.A.a.a.b #31	ENSGT00390000005100.n #33	ENSGT00510000047802 #34	ENSGT01030000234518.C.a.a	ENSGT00530000064158 #35	ENSGT00940000160969 #36
Cebidae_a	ANCESTRAL SPECIES	9	ENSGT00390000010157.b	ENSGT00940000160377	ENSGT00390000008862.a	ENSGT00940000158445 #7	ENSGT00940000155764.C #8	ENSGT00530000063679.B #9	ENSGT00940000156719 #11	ENSGT01100000264612	ENSGT00940000158178 #13	ENSGT00940000159089.i.a.a #14	ENSGT00940000159801.B #15	ENSGT00390000005605 #16	ENSGT00530000063000.a.a.b #17	ENSGT00940000159543 #19	ENSGT00940000159788.b #21	ENSGT00390000013443.c.e.b #22	ENSGT00940000159869 #23	ENSGT00940000159005	ENSGT00940000160550 #24	ENSGT00940000161143 #25	ENSGT00470000042444 #26	ENSGT00940000162184 #27	ENSGT00940000162431 #28	ENSGT00940000162311 #29	ENSGT00390000014512 #30	ENSGT01050000244887.A.a.a.b #31	ENSGT00390000005100.n #33	ENSGT00510000047802 #34	ENSGT01030000234518.C.a.a	ENSGT00530000064158 #35	ENSGT00940000160969 #36
Capuchin	MODERN SPECIES	263			ENSCCAG00000027821	TMED1 (ENSCCAG00000029691) #7	DNM2 (ENSCCAG00000028230) #8	QTRT1 (ENSCCAG00000021651) #9	ILF3 (ENSCCAG00000019834) #11	ENSCCAG00000033418	SLC44A2 (ENSCCAG00000036854) #13	ENSCCAG00000021920 #14	CDKN2D (ENSCCAG00000031903) #15	KRI1 (ENSCCAG00000034336) #16	ATG4D (ENSCCAG00000028581) #17	KEAP1 (ENSCCAG00000028133) #19	PDE4A (ENSCCAG00000027835) #21	CDC37 (ENSCCAG00000024424) #22	TYK2 (ENSCCAG00000023503) #23	ICAM3 (ENSCCAG00000023024)	RAVER1 (ENSCCAG00000031723) #24	FDX2 (ENSCCAG00000029890) #25	ZGLP1 (ENSCCAG00000031246) #26	ICAM5 (ENSCCAG00000034532) #27	ICAM4 (ENSCCAG00000035684) #28	ICAM1 (ENSCCAG00000028706) #29	MRPL4 (ENSCCAG00000036054) #30	S1PR2 (ENSCCAG00000019768) #31	ENSCCAG00000034652 #33	EIF3G (ENSCCAG00000013164) #34	P2RY11 (ENSCCAG00000030662)	PPAN (ENSCCAG00000032527) #35	ANGPTL6 (ENSCCAG00000020269) #36
Marmoset	MODERN SPECIES	14	YIPF2 (ENSCJAG00000006294)	CARM1 (ENSCJAG00000006228)	C19orf38 (ENSCJAG00000006309)	TMED1 (ENSCJAG00000006313) #7	DNM2 (ENSCJAG00000006319) #8	QTRT1 (ENSCJAG00000006506) #9	ILF3 (ENSCJAG00000006374) #11	SLC44A2 (ENSCJAG00000035886) #13	ENSCJAG00000006616 #14	CDKN2D (ENSCJAG00000083382) #15	KRI1 (ENSCJAG00000006629) #16	ATG4D (ENSCJAG00000006637) #17	S1PR5 (ENSCJAG00000041143) #18	KEAP1 (ENSCJAG00000006677) #19	PDE4A (ENSCJAG00000006698) #21	ENSCJAG00000006753 #22	TYK2 (ENSCJAG00000006781) #23	ICAM3 (ENSCJAG00000005644)	RAVER1 (ENSCJAG00000005671) #24	FDX2 (ENSCJAG00000080365) #25	ZGLP1 (ENSCJAG00000075845) #26	ICAM5 (ENSCJAG00000005726) #27	ICAM4 (ENSCJAG00000005760) #28	ICAM1 (ENSCJAG00000047562) #29	MRPL4 (ENSCJAG00000005764) #30	S1PR2 (ENSCJAG00000022912) #31	DNMT1 (ENSCJAG00000005794) #33	EIF3G (ENSCJAG00000005889) #34	P2RY11 (ENSCJAG00000039396)	PPAN (ENSCJAG00000039296) #35	ANGPTL6 (ENSCJAG00000005919) #36
Mas night monkey	MODERN SPECIES	937	YIPF2 (ENSANAG00000033787)	CARM1 (ENSANAG00000027252)	ENSANAG00000030631	TMED1 (ENSANAG00000026228) #7	DNM2 (ENSANAG00000037257) #8	QTRT1 (ENSANAG00000024566) #9	ILF3 (ENSANAG00000026889) #11	ENSANAG00000033056	SLC44A2 (ENSANAG00000025859) #13	ENSANAG00000024668 #14	CDKN2D (ENSANAG00000030388) #15	KRI1 (ENSANAG00000026577) #16	ATG4D (ENSANAG00000026983) #17	KEAP1 (ENSANAG00000023114) #19	PDE4A (ENSANAG00000024994) #21	ENSANAG00000024691 #22	TYK2 (ENSANAG00000036847) #23	ENSANAG00000026066	ICAM3 (ENSANAG00000023726)	RAVER1 (ENSANAG00000028226) #24	FDX2 (ENSANAG00000023664) #25	ZGLP1 (ENSANAG00000026424) #26	ICAM5 (ENSANAG00000024954) #27	ICAM4 (ENSANAG00000020931) #28	ICAM1 (ENSANAG00000022000) #29	MRPL4 (ENSANAG00000025428) #30	S1PR2 (ENSANAG00000017596) #31	DNMT1 (ENSANAG00000024827) #33	EIF3G (ENSANAG00000024081) #34	P2RY11 (ENSANAG00000020323)	ENSANAG00000020371 #35
Simiiformes	ANCESTRAL SPECIES																	ENSGT00390000013443.c.e.a ##22
Catarrhini	DUPLICATION
Catarrhini	ANCESTRAL SPECIES																	ENSGT00390000013443.c.e.a.a ##22
Hominoidea	ANCESTRAL SPECIES		ENSGT00940000160377	ENSGT00390000008862	ENSGT00940000158445 #7	ENSGT00940000155764.C #8	ENSGT00530000063679.B #9	ENSGT00940000156719 #11	ENSGT00900000143551	ENSGT00940000158178 #13	ENSGT00940000159089 #14	ENSGT00940000159801.B #15	ENSGT00390000005605 #16	ENSGT00530000063000.a.a.b #17	ENSGT01050000244887.A.a.a.a #18	ENSGT00940000159543 #19	ENSGT00940000159788.b #21	ENSGT00390000013443.c.e.a.a ##22	ENSGT00940000159869 #23	ENSGT00910000147270	ENSGT00940000159005	ENSGT00940000160550 #24	ENSGT00940000161143 #25	ENSGT00470000042444 #26	ENSGT00940000162184 #27	ENSGT00940000162431 #28	ENSGT00940000162311 #29	ENSGT00390000014512 #30	ENSGT01050000244887.A.a.a.b #31	ENSGT00390000005100 #33	ENSGT00510000047802 #34	ENSGT01030000234518.C.a.a	ENSGT00530000064158 #35
Hominidae	ANCESTRAL SPECIES		ENSGT00940000160377	ENSGT00390000008862	ENSGT00940000158445 #7	ENSGT00940000155764.C #8	ENSGT00530000063679.B #9	ENSGT00940000156719 #11	ENSGT00900000143551	ENSGT00940000158178 #13	ENSGT00940000159089 #14	ENSGT00940000159801.B #15	ENSGT00390000005605 #16	ENSGT00530000063000.a.a.b #17	ENSGT01050000244887.A.a.a.a #18	ENSGT00940000159543 #19	ENSGT00940000159788.b #21	ENSGT00390000013443.c.e.a.a ##22	ENSGT00940000159869 #23	ENSGT00910000147270	ENSGT00940000159005	ENSGT00940000160550 #24	ENSGT00940000161143 #25	ENSGT00470000042444 #26	ENSGT00940000162184 #27	ENSGT00940000162431 #28	ENSGT00940000162311 #29	ENSGT00390000014512 #30	ENSGT01050000244887.A.a.a.b #31	ENSGT00390000005100 #33	ENSGT00510000047802 #34	ENSGT01030000234518.C.a.a	ENSGT00530000064158 #35
Homo/Pan/Gorilla group	ANCESTRAL SPECIES		ENSGT00940000160377	ENSGT00390000008862	ENSGT00940000158445 #7	ENSGT00940000155764.C #8	ENSGT00530000063679.B #9	ENSGT00940000156719 #11	ENSGT00900000143551	ENSGT00940000158178 #13	ENSGT00940000159089 #14	ENSGT00940000159801.B #15	ENSGT00390000005605 #16	ENSGT00530000063000.a.a.b #17	ENSGT01050000244887.A.a.a.a #18	ENSGT00940000159543 #19	ENSGT00940000159788.b #21	ENSGT00390000013443.c.e.a.a ##22	ENSGT00940000159869 #23	ENSGT00910000147270	ENSGT00940000159005	ENSGT00940000160550 #24	ENSGT00940000161143 #25	ENSGT00470000042444 #26	ENSGT00940000162184 #27	ENSGT00940000162431 #28	ENSGT00940000162311 #29	ENSGT00390000014512 #30	ENSGT01050000244887.A.a.a.b #31	ENSGT00390000005100 #33	ENSGT00510000047802 #34	ENSGT01030000234518.C.a.a	ENSGT00530000064158 #35
Homo/Pan group	ANCESTRAL SPECIES		ENSGT00940000160377	ENSGT00390000008862	ENSGT00940000158445 #7	ENSGT00940000155764.C #8	ENSGT00530000063679.B #9	ENSGT00940000156719 #11	ENSGT00900000143551	ENSGT00940000158178 #13	ENSGT00940000159089 #14	ENSGT00940000159801.B #15	ENSGT00390000005605 #16	ENSGT00530000063000.a.a.b #17	ENSGT01050000244887.A.a.a.a #18	ENSGT00940000159543 #19	ENSGT00940000159788.b #21	ENSGT00390000013443.c.e.a.a ##22	ENSGT00940000159869 #23	ENSGT00910000147270	ENSGT00940000159005	ENSGT00940000160550 #24	ENSGT00940000161143 #25	ENSGT00470000042444 #26	ENSGT00940000162184 #27	ENSGT00940000162431 #28	ENSGT00940000162311 #29	ENSGT00390000014512 #30	ENSGT01050000244887.A.a.a.b #31	ENSGT00390000005100 #33	ENSGT00510000047802 #34	ENSGT01030000234518.C.a.a	ENSGT00530000064158 #35
Pan	ANCESTRAL SPECIES	14	ENSGT00940000160377	ENSGT00390000008862	ENSGT00940000158445 #7	ENSGT00940000155764.C #8	ENSGT00530000063679.B #9	ENSGT00940000156719 #11	ENSGT00900000143551	ENSGT00940000158178 #13	ENSGT00940000159089 #14	ENSGT00940000159801.B #15	ENSGT00390000005605 #16	ENSGT00530000063000.a.a.b #17	ENSGT01050000244887.A.a.a.a #18	ENSGT00940000159543 #19	ENSGT00940000159788.b #21	ENSGT00390000013443.c.e.a.a ##22	ENSGT00940000159869 #23	ENSGT00910000147270	ENSGT00940000159005	ENSGT00940000160550 #24	ENSGT00940000161143 #25	ENSGT00470000042444 #26	ENSGT00940000162184 #27	ENSGT00940000162431 #28	ENSGT00940000162311 #29	ENSGT00390000014512 #30	ENSGT01050000244887.A.a.a.b #31	ENSGT00390000005100 #33	ENSGT00510000047802 #34	ENSGT01030000234518.C.a.a	ENSGT00530000064158 #35
Chimpanzee	MODERN SPECIES	10	YIPF2 (ENSPTRG00000010486)	CARM1 (ENSPTRG00000010485)	C19H19orf38 (ENSPTRG00000033817)	TMED1 (ENSPTRG00000010484) #7	DNM2 (ENSPTRG00000034439) #8	QTRT1 (ENSPTRG00000010481) #9	ILF3 (ENSPTRG00000010480) #11	ENSPTRG00000047038	SLC44A2 (ENSPTRG00000010479) #13	AP1M2 (ENSPTRG00000010478) #14	CDKN2D (ENSPTRG00000010477) #15	KRI1 (ENSPTRG00000010476) #16	ATG4D (ENSPTRG00000010475) #17	KEAP1 (ENSPTRG00000010473) #19	PDE4A (ENSPTRG00000010470) #21	CDC37 (ENSPTRG00000010469) ##22	TYK2 (ENSPTRG00000010468) #23	ENSPTRG00000043915	ICAM3 (ENSPTRG00000010467)	RAVER1 (ENSPTRG00000010466) #24	FDX2 (ENSPTRG00000010465) #25	ZGLP1 (ENSPTRG00000034377) #26	ICAM5 (ENSPTRG00000010464) #27	ICAM4 (ENSPTRG00000022810) #28	ICAM1 (ENSPTRG00000010463) #29	MRPL4 (ENSPTRG00000010462) #30	S1PR2 (ENSPTRG00000041995) #31	DNMT1 (ENSPTRG00000010461) #33	EIF3G (ENSPTRG00000010460) #34	P2RY11 (ENSPTRG00000040877)	PPAN (ENSPTRG00000010459) #35
Bonobo	MODERN SPECIES	10	CARM1 (ENSPPAG00000030586)	C19orf38 (ENSPPAG00000042367)	TMED1 (ENSPPAG00000031704) #7	DNM2 (ENSPPAG00000004096) #8	QTRT1 (ENSPPAG00000030556) #9	ILF3 (ENSPPAG00000040547) #11	ENSPPAG00000042775	SLC44A2 (ENSPPAG00000039593) #13	AP1M2 (ENSPPAG00000042634) #14	ENSPPAG00000038326 #15	KRI1 (ENSPPAG00000040241) #16	ATG4D (ENSPPAG00000031810) #17	S1PR5 (ENSPPAG00000036033) #18	KEAP1 (ENSPPAG00000038958) #19	PDE4A (ENSPPAG00000043851) #21	CDC37 (ENSPPAG00000041597) ##22	TYK2 (ENSPPAG00000039135) #23	ENSPPAG00000020234	ICAM3 (ENSPPAG00000042660)	RAVER1 (ENSPPAG00000002611) #24	FDX2 (ENSPPAG00000012689) #25	ZGLP1 (ENSPPAG00000028628) #26	ICAM5 (ENSPPAG00000030844) #27	ICAM4 (ENSPPAG00000035190) #28	ICAM1 (ENSPPAG00000034232) #29	ENSPPAG00000041740 #30	S1PR2 (ENSPPAG00000019512) #31	DNMT1 (ENSPPAG00000027461) #33	EIF3G (ENSPPAG00000027888) #34	P2RY11 (ENSPPAG00000041793)	PPAN (ENSPPAG00000039744) #35
Human	MODERN SPECIES	10	YIPF2 (ENSG00000130733)	CARM1 (ENSG00000142453)	C19orf38 (ENSG00000214212)	TMED1 (ENSG00000099203) #7	DNM2 (ENSG00000079805) #8	QTRT1 (ENSG00000213339) #9	ILF3 (ENSG00000129351) #11	SLC44A2 (ENSG00000129353) #13	AP1M2 (ENSG00000129354) #14	CDKN2D (ENSG00000129355) #15	KRI1 (ENSG00000129347) #16	ATG4D (ENSG00000130734) #17	S1PR5 (ENSG00000180739) #18	KEAP1 (ENSG00000079999) #19	PDE4A (ENSG00000065989) #21	CDC37 (ENSG00000105401) ##22	TYK2 (ENSG00000105397) #23	ICAM3 (ENSG00000076662)	RAVER1 (ENSG00000161847) #24	FDX2 (ENSG00000267673) #25	ZGLP1 (ENSG00000220201) #26	ICAM5 (ENSG00000105376) #27	ICAM4 (ENSG00000105371) #28	ICAM1 (ENSG00000090339) #29	MRPL4 (ENSG00000105364) #30	S1PR2 (ENSG00000267534) #31	DNMT1 (ENSG00000130816) #33	EIF3G (ENSG00000130811) #34	P2RY11 (ENSG00000244165)	PPAN (ENSG00000130810) #35	PPAN-P2RY11 (ENSG00000243207)
Gorilla	MODERN SPECIES	10	CARM1 (ENSGGOG00000000695)	C19orf38 (ENSGGOG00000037632)	TMED1 (ENSGGOG00000005979) #7	DNM2 (ENSGGOG00000005968) #8	QTRT1 (ENSGGOG00000023774) #9	ILF3 (ENSGGOG00000004144) #11	ENSGGOG00000026485	ENSGGOG00000043291	SLC44A2 (ENSGGOG00000002619) #13	AP1M2 (ENSGGOG00000004621) #14	CDKN2D (ENSGGOG00000004618) #15	KRI1 (ENSGGOG00000014637) #16	ATG4D (ENSGGOG00000001366) #17	KEAP1 (ENSGGOG00000001935) #19	PDE4A (ENSGGOG00000026422) #21	CDC37 (ENSGGOG00000008098) ##22	TYK2 (ENSGGOG00000006028) #23	ENSGGOG00000041269	ENSGGOG00000006021	RAVER1 (ENSGGOG00000006015) #24	ZGLP1 (ENSGGOG00000006002) #26	ICAM5 (ENSGGOG00000005992) #27	ICAM4 (ENSGGOG00000005987) #28	ICAM1 (ENSGGOG00000005980) #29	ENSGGOG00000036529 #30	S1PR2 (ENSGGOG00000004193) #31	DNMT1 (ENSGGOG00000016574) #33	EIF3G (ENSGGOG00000005434) #34	P2RY11 (ENSGGOG00000005418)	PPAN (ENSGGOG00000039459) #35	ANGPTL6 (ENSGGOG00000016180) #36
Orangutan	MODERN SPECIES	10	CARM1 (ENSPPYG00000009565)	C19orf38 (ENSPPYG00000009564)	TMED1 (ENSPPYG00000009563) #7	DNM2 (ENSPPYG00000009562) #8	QTRT1 (ENSPPYG00000009561) #9	ILF3 (ENSPPYG00000029648) #11	ENSPPYG00000034793	SLC44A2 (ENSPPYG00000009559) #13	AP1M2 (ENSPPYG00000009558) #14	CDKN2D (ENSPPYG00000009557) #15	KRI1 (ENSPPYG00000009556) #16	ATG4D (ENSPPYG00000036362) #17	S1PR5 (ENSPPYG00000009554) #18	KEAP1 (ENSPPYG00000009553) #19	PDE4A (ENSPPYG00000009552) #21	CDC37 (ENSPPYG00000009551) ##22	TYK2 (ENSPPYG00000010516) #23	ENSPPYG00000036913	ENSPPYG00000010514 #24	FDX2 (ENSPPYG00000009550) #25	ZGLP1 (ENSPPYG00000029769) #26	ICAM5 (ENSPPYG00000031661) #27	ENSPPYG00000009549 #28	ICAM1 (ENSPPYG00000009548) #29	ENSPPYG00000009547 #30	ENSPPYG00000009546 #31	DNMT1 (ENSPPYG00000009545) #33	EIF3G (ENSPPYG00000009544) #34	P2RY11 (ENSPPYG00000033614)	PPAN (ENSPPYG00000030196) #35	ENSPPYG00000009542 #36
Gibbon	MODERN SPECIES		ENSNLEG00000031325	ENSNLEG00000027586	TMED1 (ENSNLEG00000012365) #7	DNM2 (ENSNLEG00000012352) #8	QTRT1 (ENSNLEG00000012343) #9	ILF3 (ENSNLEG00000012290) #11	SLC44A2 (ENSNLEG00000012275) #13	ENSNLEG00000035868	ENSNLEG00000012270 #14	CDKN2D (ENSNLEG00000012265) #15	ENSNLEG00000012256 #16	ATG4D (ENSNLEG00000012244) #17	ENSNLEG00000032388 #18	ENSNLEG00000012241 #19	PDE4A (ENSNLEG00000012207) #21	CDC37 (ENSNLEG00000012202) ##22	TYK2 (ENSNLEG00000012193) #23	ENSNLEG00000027633	ENSNLEG00000028546	RAVER1 (ENSNLEG00000012181) #24	FDX2 (ENSNLEG00000012175) #25	ZGLP1 (ENSNLEG00000029808) #26	ICAM4 (ENSNLEG00000028505) #28	ICAM1 (ENSNLEG00000012158) #29	ENSNLEG00000012155 #30	DNMT1 (ENSNLEG00000012092) #33	EIF3G (ENSNLEG00000012067) #34	P2RY11 (ENSNLEG00000034093)	PPAN (ENSNLEG00000012048) #35	ANGPTL6 (ENSNLEG00000012043) #36	ENSNLEG00000012032 #37
Catarrhini	ANCESTRAL SPECIES	7	ENSGT00940000159531	ENSGT00390000009693.n	ENSGT00390000002292.b	ENSGT00940000163112	ENSGT00940000159591	ENSGT00940000159349	ENSGT00940000157139	ENSGT00940000157692	ENSGT00940000157213	ENSGT00940000156944	ENSGT00390000012630.A	ENSGT00390000010107	ENSGT00940000157281	ENSGT00390000017762	ENSGT00950000182859.A.a.b.b	ENSGT00390000013443.c.e.a.b ##22	ENSGT00940000155650	ENSGT00390000012944	ENSGT00390000011705	ENSGT00390000011578	ENSGT00940000161042	ENSGT00940000159624	ENSGT00940000159087	ENSGT00390000013517	ENSGT00500000044831.a.a.b	ENSGT00940000158850	ENSGT00940000162063	ENSGT00940000154444.B	ENSGT00940000154444.A	ENSGT00940000159345	ENSGT00940000161609
Hominoidea	ANCESTRAL SPECIES	8	ENSGT00940000159531	ENSGT00390000009693.n	ENSGT00390000002292.b	ENSGT00940000163112	ENSGT00940000159591	ENSGT00940000159349	ENSGT00940000157139	ENSGT00940000157692	ENSGT00940000157213	ENSGT00940000156944	ENSGT00390000012630.A	ENSGT00390000010107	ENSGT00940000157281.g	ENSGT00390000017762	ENSGT00950000182859.A.a.b.b	ENSGT00390000013443.c.e.a.b ##22	ENSGT00940000155650	ENSGT00390000012944	ENSGT00390000011705	ENSGT00390000011578	ENSGT00940000161042	ENSGT00940000159624	ENSGT00940000159087	ENSGT00390000013517	ENSGT00500000044831.a.a.b	ENSGT00940000158850	ENSGT00940000162063	ENSGT00940000154444.B	ENSGT00940000154444.A	ENSGT00940000159345.p	ENSGT00940000161609
Hominidae	ANCESTRAL SPECIES	7	ENSGT00390000009693.n	ENSGT00390000002292.b	ENSGT00940000163112	ENSGT00940000159591	ENSGT00390000012916.h.a.b	ENSGT00940000159349	ENSGT00940000157139	ENSGT00940000157692	ENSGT00940000157213	ENSGT00940000156944	ENSGT00390000012630.A	ENSGT00390000010107	ENSGT00940000157281.g	ENSGT00390000017762	ENSGT00950000182859.A.a.b.b	ENSGT00390000013443.c.e.a.b ##22	ENSGT00940000155650	ENSGT00390000012944	ENSGT00390000011705	ENSGT00390000011578	ENSGT00940000161042	ENSGT00940000159624	ENSGT00940000159087	ENSGT00390000013517	ENSGT00500000044831.a.a.b	ENSGT00940000158850	ENSGT00940000162063	ENSGT00940000154444.B	ENSGT00940000154444.A	ENSGT00940000159345.p	ENSGT00940000161609
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	7	ENSGT00390000009693.n	ENSGT00390000002292.b	ENSGT00940000163112	ENSGT00940000159591	ENSGT00390000012916.h.a.b	ENSGT00940000159349	ENSGT00940000157139.i	ENSGT00940000157692	ENSGT00940000157213	ENSGT00940000156944	ENSGT00390000012630.A	ENSGT00390000010107	ENSGT00940000157281.g	ENSGT00390000017762	ENSGT00950000182859.A.a.b.b	ENSGT00390000013443.c.e.a.b ##22	ENSGT00940000155650	ENSGT00390000012944	ENSGT00390000011705	ENSGT00390000011578	ENSGT00940000161042	ENSGT00940000159624	ENSGT00940000159087	ENSGT00390000013517	ENSGT00500000044831.a.a.b	ENSGT00940000158850	ENSGT00940000162063	ENSGT00940000154444.B	ENSGT00940000154444.A	ENSGT00940000159345.p	ENSGT00940000161609
Homo/Pan group	ANCESTRAL SPECIES	8	ENSGT00390000002292.b	ENSGT00940000163112	ENSGT00940000159591	ENSGT00390000012916.h.a.b	ENSGT00940000159349	ENSGT00940000157139.i	ENSGT00940000157692	ENSGT00940000157213	ENSGT00940000156944	ENSGT00390000012630.A	ENSGT00390000010107	ENSGT00940000157281.h	ENSGT00390000017762	ENSGT00940000157281.g	ENSGT00950000182859.A.a.b.b	ENSGT00390000013443.c.e.a.b ##22	ENSGT00940000155650	ENSGT00390000012944	ENSGT00390000011705	ENSGT00390000011578	ENSGT00940000161042	ENSGT00940000159624	ENSGT00940000159087	ENSGT00390000013517	ENSGT00500000044831.a.a.b	ENSGT00940000158850	ENSGT00940000162063	ENSGT00940000154444.B	ENSGT00940000154444.A	ENSGT00940000159345.p	ENSGT00940000161609
Pan	ANCESTRAL SPECIES	10	ENSGT00390000002292.b	ENSGT00940000163112	ENSGT00940000159591	ENSGT00390000012916.h.a.b	ENSGT00940000159349	ENSGT00940000157139.i	ENSGT00940000157692	ENSGT00940000157213	ENSGT00940000156944	ENSGT00390000012630.A	ENSGT00390000010107	ENSGT00940000157281.h	ENSGT00390000017762	ENSGT00940000157281.g	ENSGT00950000182859.A.a.b.b	ENSGT00390000013443.c.e.a.b ##22	ENSGT00940000155650	ENSGT00390000012944	ENSGT00390000011705	ENSGT00390000011578	ENSGT00940000161042	ENSGT00940000159624	ENSGT00940000159087	ENSGT00390000013517	ENSGT00500000044831.a.a.b	ENSGT00940000158850	ENSGT00940000162063	ENSGT00940000154444.B	ENSGT00940000154444.A	ENSGT00940000159345.p	ENSGT00940000161609
Chimpanzee	MODERN SPECIES	18	ATP10B (ENSPTRG00000017493)	PTTG1 (ENSPTRG00000017492)	SLU7 (ENSPTRG00000017491)	FAM200C (ENSPTRG00000042098)	C1QTNF2 (ENSPTRG00000017489)	ENSPTRG00000046075	CCNJL (ENSPTRG00000017488)	FABP6 (ENSPTRG00000017487)	PWWP2A (ENSPTRG00000017486)	TTC1 (ENSPTRG00000017484)	ADRA1B (ENSPTRG00000017482)	IL12B (ENSPTRG00000017481)	UBLCP1 (ENSPTRG00000017480)	RNF145 (ENSPTRG00000017479)	EBF1 (ENSPTRG00000017477)	ENSPTRG00000042059 ##22	ENSPTRG00000028515	CLINT1 (ENSPTRG00000052146)	LSM11 (ENSPTRG00000017474)	THG1L (ENSPTRG00000017473)	C5H5orf52 (ENSPTRG00000017472)	SOX30 (ENSPTRG00000017471)	ADAM19 (ENSPTRG00000017470)	NIPAL4 (ENSPTRG00000017469)	FNDC9 (ENSPTRG00000041848)	CYFIP2 (ENSPTRG00000017465)	ITK (ENSPTRG00000017464)	GARIN3 (ENSPTRG00000017463)	MED7 (ENSPTRG00000017462)	HAVCR2 (ENSPTRG00000017461)	HAVCR1 (ENSPTRG00000017459)
Bonobo	MODERN SPECIES	18	PTTG1 (ENSPPAG00000030326)	SLU7 (ENSPPAG00000032717)	FAM200C (ENSPPAG00000009361)	C1QTNF2 (ENSPPAG00000038286)	ENSPPAG00000030618	CCNJL (ENSPPAG00000039661)	ENSPPAG00000042064	PWWP2A (ENSPPAG00000029086)	TTC1 (ENSPPAG00000043697)	ADRA1B (ENSPPAG00000041419)	IL12B (ENSPPAG00000037071)	UBLCP1 (ENSPPAG00000031061)	ENSPPAG00000009096	ENSPPAG00000010576	EBF1 (ENSPPAG00000015552)	ENSPPAG00000038620 ##22	CLINT1 (ENSPPAG00000033967)	ENSPPAG00000019327	THG1L (ENSPPAG00000042438)	C5orf52 (ENSPPAG00000039111)	SOX30 (ENSPPAG00000042889)	ADAM19 (ENSPPAG00000032090)	NIPAL4 (ENSPPAG00000029722)	CYFIP2 (ENSPPAG00000042023)	ITK (ENSPPAG00000031516)	GARIN3 (ENSPPAG00000032420)	MED7 (ENSPPAG00000025746)	HAVCR2 (ENSPPAG00000026219)	ENSPPAG00000033621	TIMD4 (ENSPPAG00000025225)	SGCD (ENSPPAG00000027674)
Gorilla	MODERN SPECIES	18	PTTG1 (ENSGGOG00000016937)	SLU7 (ENSGGOG00000005591)	FAM200C (ENSGGOG00000015371)	C1QTNF2 (ENSGGOG00000005719)	ENSGGOG00000043342	ENSGGOG00000004645	ENSGGOG00000004642	PWWP2A (ENSGGOG00000001181)	TTC1 (ENSGGOG00000001179)	ADRA1B (ENSGGOG00000001969)	IL12B (ENSGGOG00000004419)	UBLCP1 (ENSGGOG00000014527)	RNF145 (ENSGGOG00000023385)	ENSGGOG00000004151	EBF1 (ENSGGOG00000000033)	ENSGGOG00000023556 ##22	CLINT1 (ENSGGOG00000008481)	LSM11 (ENSGGOG00000008672)	THG1L (ENSGGOG00000008668)	C5orf52 (ENSGGOG00000010030)	SOX30 (ENSGGOG00000025241)	ADAM19 (ENSGGOG00000014156)	NIPAL4 (ENSGGOG00000014146)	FNDC9 (ENSGGOG00000012060)	CYFIP2 (ENSGGOG00000012019)	ITK (ENSGGOG00000003614)	GARIN3 (ENSGGOG00000008998)	MED7 (ENSGGOG00000002565)	HAVCR2 (ENSGGOG00000023106)	ENSGGOG00000008871	ENSGGOG00000015766
Gibbon	MODERN SPECIES	11	ATP10B (ENSNLEG00000004434)	PTTG1 (ENSNLEG00000004396)	SLU7 (ENSNLEG00000004355)	FAM200C (ENSNLEG00000018765)	C1QTNF2 (ENSNLEG00000031564)	ENSNLEG00000032973	CCNJL (ENSNLEG00000004343)	ENSNLEG00000004336	PWWP2A (ENSNLEG00000018764)	TTC1 (ENSNLEG00000004317)	ENSNLEG00000004316	IL12B (ENSNLEG00000004287)	UBLCP1 (ENSNLEG00000004270)	RNF145 (ENSNLEG00000004241)	EBF1 (ENSNLEG00000004218)	ENSNLEG00000004216 ##22	CLINT1 (ENSNLEG00000004186)	LSM11 (ENSNLEG00000004178)	THG1L (ENSNLEG00000004166)	ENSNLEG00000027951	SOX30 (ENSNLEG00000004158)	ADAM19 (ENSNLEG00000004135)	NIPAL4 (ENSNLEG00000004132)	CYFIP2 (ENSNLEG00000003979)	FNDC9 (ENSNLEG00000004128)	ITK (ENSNLEG00000003943)	GARIN3 (ENSNLEG00000003940)	MED7 (ENSNLEG00000003939)	HAVCR2 (ENSNLEG00000003917)	ENSNLEG00000028009	TIMD4 (ENSNLEG00000003890)
Cercopithecidae	ANCESTRAL SPECIES	5	ENSGT00940000159531	ENSGT00390000009693.n	ENSGT00390000002292.b	ENSGT00940000163112	ENSGT00940000159591	ENSGT00940000159349	ENSGT00940000157139	ENSGT00940000157692	ENSGT00940000157213	ENSGT00940000156944	ENSGT00390000012630.A	ENSGT00390000010107	ENSGT00940000157281	ENSGT00390000017762	ENSGT00950000182859.A.a.b.b	ENSGT00390000013443.c.e.a.b ##22	ENSGT00940000155650	ENSGT00390000012944	ENSGT00390000011705	ENSGT00390000011578	ENSGT00940000161042	ENSGT00940000159624	ENSGT00940000159087	ENSGT00390000013517	ENSGT00500000044831.a.a.b	ENSGT00940000158850	ENSGT00940000162063	ENSGT00940000154444.B	ENSGT00940000154444.A	ENSGT00940000159345	ENSGT00940000161609
Cercopithecinae	ANCESTRAL SPECIES	9	ENSGT00940000159531	ENSGT00390000009693.n	ENSGT00390000002292.b	ENSGT00940000163112	ENSGT00940000159591	ENSGT00940000159349	ENSGT00940000157139	ENSGT00940000157692	ENSGT00940000157213	ENSGT00940000156944	ENSGT00390000012630.A	ENSGT00390000010107	ENSGT00940000157281	ENSGT00390000017762	ENSGT00950000182859.A.a.b.b	ENSGT00390000013443.c.e.a.b ##22	ENSGT00940000155650	ENSGT00390000012944	ENSGT00390000011705	ENSGT00390000011578	ENSGT00940000161042	ENSGT00940000159624	ENSGT00940000159087	ENSGT00390000013517	ENSGT00500000044831.a.a.b	ENSGT00940000158850	ENSGT00940000162063	ENSGT00940000154444.B	ENSGT00940000154444.A	ENSGT00940000159345	ENSGT00940000161609
Cercopithecinae_a	ANCESTRAL SPECIES	9	ENSGT00390000002292.b	ENSGT00940000163112	ENSGT00940000159591	ENSGT00960000186777	ENSGT00390000012916.h.a.b	ENSGT00940000159349	ENSGT00940000157139	ENSGT00940000157692	ENSGT00940000157213	ENSGT00940000156944	ENSGT00390000012630.A	ENSGT00390000010107	ENSGT00940000157281	ENSGT00390000017762	ENSGT00950000182859.A.a.b.b	ENSGT00390000013443.c.e.a.b ##22	ENSGT00940000155650	ENSGT00390000012944	ENSGT00390000011705	ENSGT00390000011578	ENSGT00940000161042	ENSGT00940000159624	ENSGT00940000159087	ENSGT00390000013517	ENSGT00500000044831.a.a.b	ENSGT00940000158850	ENSGT00940000162063	ENSGT00940000154444.B	ENSGT00940000154444.A	ENSGT00940000159345	ENSGT00940000161609
Macaca	ANCESTRAL SPECIES	7	ENSGT00940000159531	ENSGT00390000009693.n	ENSGT00390000002292.b	ENSGT00940000163112	ENSGT00940000159591	ENSGT00960000186777	ENSGT00940000159349	ENSGT00940000157139	ENSGT00940000157692	ENSGT00940000157213	ENSGT00940000156944	ENSGT00390000012630.A	ENSGT00390000010107	ENSGT00940000157281	ENSGT00950000182859.A.a.b.b	ENSGT00390000013443.c.e.a.b ##22	ENSGT00940000155650	ENSGT00390000012944	ENSGT00390000011705	ENSGT00390000011578	ENSGT00940000161042	ENSGT00940000159624	ENSGT00940000159087	ENSGT00390000013517	ENSGT00500000044831.a.a.b	ENSGT00940000158850	ENSGT00940000162063	ENSGT00940000154444.B	ENSGT00940000154444.A	ENSGT00940000159345	ENSGT00940000161609
Macaca_a	ANCESTRAL SPECIES	8	ENSGT00910000147255	ENSGT00940000159531	ENSGT00390000009693.n	ENSGT00390000002292.b	ENSGT00940000163112	ENSGT00940000159591	ENSGT00940000159349	ENSGT00940000157139	ENSGT00940000157692	ENSGT00940000157213	ENSGT00940000156944	ENSGT00390000012630.A	ENSGT00390000010107	ENSGT00940000157281	ENSGT00950000182859.A.a.b.b	ENSGT00390000013443.c.e.a.b ##22	ENSGT00940000155650	ENSGT00390000012944	ENSGT00390000011705	ENSGT01030000240088	ENSGT01100000263539.b.a.a.a.a.a.a.b.a.c.a ##32	ENSGT00940000161042	ENSGT00940000159624	ENSGT00940000159087	ENSGT00390000013517	ENSGT00500000044831.a.a.b	ENSGT00940000158850	ENSGT00940000162063	ENSGT00940000154444.B	ENSGT00940000154444.A	ENSGT00940000159345
Crab-eating macaque	MODERN SPECIES	16	ENSMFAG00000064402	ENSMFAG00000062368	ATP10B (ENSMFAG00000045373)	PTTG1 (ENSMFAG00000036180)	SLU7 (ENSMFAG00000002001)	FAM200C (ENSMFAG00000017692)	CCNJL (ENSMFAG00000002131)	FABP6 (ENSMFAG00000002028)	PWWP2A (ENSMFAG00000027720)	TTC1 (ENSMFAG00000040270)	ADRA1B (ENSMFAG00000045077)	IL12B (ENSMFAG00000036061)	UBLCP1 (ENSMFAG00000045929)	RNF145 (ENSMFAG00000002232)	EBF1 (ENSMFAG00000034539)	ENSMFAG00000063064 ##22	CLINT1 (ENSMFAG00000039041)	LSM11 (ENSMFAG00000034084)	THG1L (ENSMFAG00000041928)	ENSMFAG00000061135	ENSMFAG00000051588 ##32	SOX30 (ENSMFAG00000029536)	ADAM19 (ENSMFAG00000034190)	NIPAL4 (ENSMFAG00000029978)	FNDC9 (ENSMFAG00000009168)	CYFIP2 (ENSMFAG00000036175)	ITK (ENSMFAG00000000719)	ENSMFAG00000049581 ##12	GARIN3 (ENSMFAG00000034384)	MED7 (ENSMFAG00000029781)	HAVCR2 (ENSMFAG00000036143)
Rhesus	MODERN SPECIES	16	ATP10B (ENSMMUG00000012643)	PTTG1 (ENSMMUG00000023077)	SLU7 (ENSMMUG00000023075)	FAM200C (ENSMMUG00000023074)	ENSMMUG00000056678	C1QTNF2 (ENSMMUG00000015219)	CCNJL (ENSMMUG00000023073)	FABP6 (ENSMMUG00000023072)	PWWP2A (ENSMMUG00000011472)	TTC1 (ENSMMUG00000011471)	ADRA1B (ENSMMUG00000050043)	IL12B (ENSMMUG00000021701)	UBLCP1 (ENSMMUG00000021700)	RNF145 (ENSMMUG00000021699)	EBF1 (ENSMMUG00000021696)	ENSMMUG00000062861 ##22	CLINT1 (ENSMMUG00000002272)	LSM11 (ENSMMUG00000052188)	THG1L (ENSMMUG00000050641)	ENSMMUG00000060179	ENSMMUG00000049641 ##32	SOX30 (ENSMMUG00000021550)	ADAM19 (ENSMMUG00000021549)	NIPAL4 (ENSMMUG00000021548)	FNDC9 (ENSMMUG00000011007)	CYFIP2 (ENSMMUG00000010997)	ITK (ENSMMUG00000010995)	GARIN3 (ENSMMUG00000010994)	MED7 (ENSMMUG00000010993)	ENSMMUG00000060123	HAVCR2 (ENSMMUG00000048691)
Pig-tailed macaque	MODERN SPECIES	581	SLU7 (ENSMNEG00000029132)	FAM200C (ENSMNEG00000027228)	C1QTNF2 (ENSMNEG00000030599)	ENSMNEG00000036332	CCNJL (ENSMNEG00000028285)	ENSMNEG00000032357	FABP6 (ENSMNEG00000042984)	PWWP2A (ENSMNEG00000040509)	TTC1 (ENSMNEG00000043439)	ADRA1B (ENSMNEG00000034660)	IL12B (ENSMNEG00000033711)	UBLCP1 (ENSMNEG00000029679)	RNF145 (ENSMNEG00000036090)	ENSMNEG00000006972	EBF1 (ENSMNEG00000031614)	ENSMNEG00000041280 ##22	ENSMNEG00000031691	CLINT1 (ENSMNEG00000034378)	ENSMNEG00000039267	LSM11 (ENSMNEG00000045265)	THG1L (ENSMNEG00000038597)	C5orf52 (ENSMNEG00000037458)	SOX30 (ENSMNEG00000034013)	ADAM19 (ENSMNEG00000043474)	NIPAL4 (ENSMNEG00000034144)	CYFIP2 (ENSMNEG00000039378)	FNDC9 (ENSMNEG00000038568)	ITK (ENSMNEG00000014666)	GARIN3 (ENSMNEG00000041469)	MED7 (ENSMNEG00000014130)	HAVCR2 (ENSMNEG00000041311)
Cercopithecinae_b	ANCESTRAL SPECIES	4	ENSGT00390000002292.b	ENSGT00940000163112	ENSGT00940000159591	ENSGT00960000186777	ENSGT00390000012916.h.a.b	ENSGT00940000159349	ENSGT00940000157139	ENSGT00940000157692	ENSGT00940000157213	ENSGT00940000156944	ENSGT00390000012630.A	ENSGT00390000010107	ENSGT00940000157281	ENSGT00390000017762	ENSGT00950000182859.A.a.b.b	ENSGT00390000013443.c.e.a.b ##22	ENSGT00940000155650	ENSGT00390000012944	ENSGT00390000011705	ENSGT00390000011578	ENSGT00940000161042	ENSGT00940000159624	ENSGT00940000159087	ENSGT00390000013517	ENSGT00500000044831.a.a.b	ENSGT00940000158850	ENSGT00940000162063	ENSGT00940000154444.B	ENSGT00940000154444.A	ENSGT00940000159345	ENSGT00940000161609
Cercopithecinae_d	ANCESTRAL SPECIES	53	ENSGT00390000002292.b	ENSGT00940000163112	ENSGT00940000159591	ENSGT00960000186777	ENSGT00390000012916.h.a.b	ENSGT00940000159349	ENSGT00940000157139	ENSGT00940000157692	ENSGT00940000157213	ENSGT00940000156944	ENSGT00390000010721.a.a.b	ENSGT00390000012630.A	ENSGT00390000010107	ENSGT00940000157281	ENSGT00950000182859.A.a.b.b	ENSGT00390000013443.c.e.a.b ##22	ENSGT00940000155650	ENSGT00390000012944	ENSGT00390000011705	ENSGT00390000011578	ENSGT00940000161042	ENSGT00940000159624	ENSGT00940000159087	ENSGT00390000013517	ENSGT00500000044831.a.a.b	ENSGT00940000158850	ENSGT00940000162063	ENSGT00940000154444.B	ENSGT00940000154444.A	ENSGT00940000159345	ENSGT00940000161609
Drill	MODERN SPECIES	1506	PTTG1 (ENSMLEG00000036351)	SLU7 (ENSMLEG00000037647)	FAM200C (ENSMLEG00000000481)	C1QTNF2 (ENSMLEG00000039438)	ENSMLEG00000032350	CCNJL (ENSMLEG00000043216)	FABP6 (ENSMLEG00000039832)	PWWP2A (ENSMLEG00000043117)	TTC1 (ENSMLEG00000043939)	ADRA1B (ENSMLEG00000037875)	ENSMLEG00000027859	IL12B (ENSMLEG00000033746)	UBLCP1 (ENSMLEG00000033543)	RNF145 (ENSMLEG00000031957)	EBF1 (ENSMLEG00000036042)	ENSMLEG00000041026 ##22	CLINT1 (ENSMLEG00000028093)	LSM11 (ENSMLEG00000027420)	THG1L (ENSMLEG00000025109)	C5orf52 (ENSMLEG00000019571)	SOX30 (ENSMLEG00000037153)	ENSMLEG00000031612	ADAM19 (ENSMLEG00000034880)	NIPAL4 (ENSMLEG00000041361)	CYFIP2 (ENSMLEG00000031854)	FNDC9 (ENSMLEG00000023465)	ITK (ENSMLEG00000041825)	GARIN3 (ENSMLEG00000021576)	MED7 (ENSMLEG00000020476)	HAVCR2 (ENSMLEG00000035212)	HAVCR1 (ENSMLEG00000005114)
Sooty mangabey	MODERN SPECIES	597	SLU7 (ENSCATG00000026140)	FAM200C (ENSCATG00000022751)	C1QTNF2 (ENSCATG00000032219)	ENSCATG00000008381	ENSCATG00000043862	CCNJL (ENSCATG00000039008)	FABP6 (ENSCATG00000042327)	PWWP2A (ENSCATG00000032682)	TTC1 (ENSCATG00000043553)	ADRA1B (ENSCATG00000043853)	ENSCATG00000005901	IL12B (ENSCATG00000035975)	UBLCP1 (ENSCATG00000032405)	RNF145 (ENSCATG00000042232)	EBF1 (ENSCATG00000041829)	ENSCATG00000044006 ##22	CLINT1 (ENSCATG00000031499)	LSM11 (ENSCATG00000042524)	THG1L (ENSCATG00000040510)	C5orf52 (ENSCATG00000040595)	SOX30 (ENSCATG00000043607)	ADAM19 (ENSCATG00000032288)	NIPAL4 (ENSCATG00000038298)	FNDC9 (ENSCATG00000022553)	CYFIP2 (ENSCATG00000037141)	ITK (ENSCATG00000031267)	GARIN3 (ENSCATG00000033615)	MED7 (ENSCATG00000023094)	HAVCR2 (ENSCATG00000035422)	HAVCR1 (ENSCATG00000018304)	TIMD4 (ENSCATG00000028879)
Rhinopithecus	ANCESTRAL SPECIES	303																ENSGT00390000013443.c.e.a.b ##22	ENSGT00550000074828.a.g.a.g.b	ENSGT00870000137463	ENSGT00940000155650	ENSGT00390000012944	ENSGT00390000011705	ENSGT00390000011578	ENSGT00940000161042	ENSGT00940000159624	ENSGT00940000159087	ENSGT00500000044831.a.a.b	ENSGT00390000013517	ENSGT00940000158850	ENSGT00940000162063	ENSGT00940000154444.B	ENSGT00940000154444.A
Black snub-nosed monkey	MODERN SPECIES	158																ENSRBIG00000029975 ##22	ENSRBIG00000042824	CLINT1 (ENSRBIG00000028713)	ENSRBIG00000035668	LSM11 (ENSRBIG00000040079)	THG1L (ENSRBIG00000037537)	C5orf52 (ENSRBIG00000042451)	SOX30 (ENSRBIG00000029511)	ADAM19 (ENSRBIG00000032143)	NIPAL4 (ENSRBIG00000025037)
Golden snub-nosed monkey	MODERN SPECIES	1079																ENSRROG00000032980 ##22	ENSRROG00000032075	CLINT1 (ENSRROG00000031281)	ENSRROG00000043493	LSM11 (ENSRROG00000013405)	THG1L (ENSRROG00000045380)	C5orf52 (ENSRROG00000027583)	SOX30 (ENSRROG00000028754)	ADAM19 (ENSRROG00000008888)	NIPAL4 (ENSRROG00000024060)	CYFIP2 (ENSRROG00000039047)	FNDC9 (ENSRROG00000024905)	ITK (ENSRROG00000036802)	GARIN3 (ENSRROG00000042231)	MED7 (ENSRROG00000025348)	HAVCR2 (ENSRROG00000028819)
Simiiformes	ANCESTRAL SPECIES																	ENSGT00390000013443.c.f ##22
Platyrrhini	ANCESTRAL SPECIES																	ENSGT00390000013443.c.f ##22
Cebidae	ANCESTRAL SPECIES																	ENSGT00390000013443.c.f ##22
Cebidae_a	ANCESTRAL SPECIES																	ENSGT00390000013443.c.f ##22
Bolivian squirrel monkey	MODERN SPECIES	150											CDKN2D (ENSSBOG00000024633) #15	KRI1 (ENSSBOG00000035570) #16	ATG4D (ENSSBOG00000030727) #17	KEAP1 (ENSSBOG00000026559) #19	PDE4A (ENSSBOG00000034527) #21	CDC37 (ENSSBOG00000023850) ##22	TYK2 (ENSSBOG00000024605) #23	ICAM3 (ENSSBOG00000028180)	RAVER1 (ENSSBOG00000023423) #24	FDX2 (ENSSBOG00000033673) #25	ZGLP1 (ENSSBOG00000031281) #26	ICAM5 (ENSSBOG00000021550) #27	ICAM4 (ENSSBOG00000016504) #28	ICAM1 (ENSSBOG00000023183) #29	MRPL4 (ENSSBOG00000020666) #30	S1PR2 (ENSSBOG00000017418) #31	DNMT1 (ENSSBOG00000035240) #33	EIF3G (ENSSBOG00000006718) #34	P2RY11 (ENSSBOG00000034093)	PPAN (ENSSBOG00000026246) #35	ANGPTL6 (ENSSBOG00000013464) #36
Tarsier	MODERN SPECIES	2162															PDE4A (ENSTSYG00000028732) #21	CDC37 (ENSTSYG00000025991) #22	TYK2 (ENSTSYG00000028862) #23
Strepsirrhini	ANCESTRAL SPECIES	28	ENSGT00390000010157.b	ENSGT00940000160377	ENSGT00390000008862	ENSGT00940000158445 #7	ENSGT00940000155764.C #8	ENSGT00530000063679.B #9	ENSGT00940000156719 #11	ENSGT00940000158178 #13	ENSGT00940000159089 #14	ENSGT00940000159801.B #15	ENSGT00390000005605 #16	ENSGT00530000063000.a.a.b #17	ENSGT01050000244887.A.a.a.a #18	ENSGT00940000159543 #19	ENSGT00940000159788.b #21	ENSGT00390000013443.c #22	ENSGT00940000159869 #23	ENSGT00940000159005	ENSGT00940000160550 #24	ENSGT00940000161143 #25	ENSGT00470000042444 #26	ENSGT00940000162184 #27	ENSGT00940000162431 #28	ENSGT00940000162311 #29	ENSGT00390000014512 #30	ENSGT01050000244887.A.a.a.b #31	ENSGT00390000005100 #33	ENSGT00510000047802 #34	ENSGT01030000234518.C.a.a	ENSGT00530000064158 #35	ENSGT00940000160969 #36
Bushbaby	MODERN SPECIES	242	YIPF2 (ENSOGAG00000016837)	CARM1 (ENSOGAG00000016835)	C19orf38 (ENSOGAG00000025609)	TMED1 (ENSOGAG00000011037) #7	DNM2 (ENSOGAG00000011030) #8	QTRT1 (ENSOGAG00000029328) #9	ENSOGAG00000015244 #11	SLC44A2 (ENSOGAG00000029872) #13	AP1M2 (ENSOGAG00000014423) #14	CDKN2D (ENSOGAG00000030833) #15	KRI1 (ENSOGAG00000027909) #16	ATG4D (ENSOGAG00000012591) #17	ENSOGAG00000027497 #18	KEAP1 (ENSOGAG00000012589) #19	PDE4A (ENSOGAG00000012581) #21	CDC37 (ENSOGAG00000011088) #22	TYK2 (ENSOGAG00000011083) #23	ICAM3 (ENSOGAG00000011078)	RAVER1 (ENSOGAG00000011071) #24	FDX2 (ENSOGAG00000011070) #25	ZGLP1 (ENSOGAG00000025914) #26	ICAM5 (ENSOGAG00000011064) #27	ICAM4 (ENSOGAG00000011058) #28	ICAM1 (ENSOGAG00000011055) #29	MRPL4 (ENSOGAG00000011051) #30	S1PR2 (ENSOGAG00000011114) #31	DNMT1 (ENSOGAG00000001265) #33	ENSOGAG00000014463 #34	PPAN (ENSOGAG00000014454) #35	ANGPTL6 (ENSOGAG00000024465) #36	SHFL (ENSOGAG00000025421) #37
Lemuriformes	ANCESTRAL SPECIES	35	ENSGT00390000018541	ENSGT00390000010157.b	ENSGT00940000160377	ENSGT00390000008862	ENSGT00940000158445 #7	ENSGT00940000155764.C #8	ENSGT00530000063679.B #9	ENSGT00940000156719 #11	ENSGT00940000158178 #13	ENSGT00940000159089 #14	ENSGT00940000159801.B #15	ENSGT00390000005605 #16	ENSGT00530000063000.a.a.b #17	ENSGT00940000159543 #19	ENSGT00940000159788.b #21	ENSGT00390000013443.c #22	ENSGT00940000159869 #23	ENSGT00940000159005	ENSGT00940000160550 #24	ENSGT00940000161143 #25	ENSGT00470000042444 #26	ENSGT00940000162184 #27	ENSGT00940000162431 #28	ENSGT00940000162311 #29	ENSGT00390000014512 #30	ENSGT01050000244887.A.a.a.b #31	ENSGT00390000005100 #33	ENSGT00510000047802 #34	ENSGT01030000234518.C.a.a	ENSGT00530000064158 #35	ENSGT00940000160969 #36
Mouse lemur	MODERN SPECIES	16	TIMM29 (ENSMICG00000043935)	YIPF2 (ENSMICG00000011429)	CARM1 (ENSMICG00000009787)	C19orf38 (ENSMICG00000044532)	TMED1 (ENSMICG00000029080) #7	DNM2 (ENSMICG00000009737) #8	QTRT1 (ENSMICG00000029300) #9	ILF3 (ENSMICG00000009694) #11	SLC44A2 (ENSMICG00000009648) #13	AP1M2 (ENSMICG00000009639) #14	CDKN2D (ENSMICG00000032531) #15	KRI1 (ENSMICG00000009591) #16	ATG4D (ENSMICG00000009575) #17	KEAP1 (ENSMICG00000009563) #19	PDE4A (ENSMICG00000026345) #21	CDC37 (ENSMICG00000010376) #22	TYK2 (ENSMICG00000010345) #23	ICAM3 (ENSMICG00000010335)	RAVER1 (ENSMICG00000010326) #24	FDX2 (ENSMICG00000029070) #25	ZGLP1 (ENSMICG00000036834) #26	ICAM5 (ENSMICG00000010301) #27	ICAM4 (ENSMICG00000010290) #28	ICAM1 (ENSMICG00000047282) #29	MRPL4 (ENSMICG00000010267) #30	S1PR2 (ENSMICG00000029506) #31	DNMT1 (ENSMICG00000010231) #33	EIF3G (ENSMICG00000006936) #34	P2RY11 (ENSMICG00000006915)	PPAN (ENSMICG00000047321) #35	ANGPTL6 (ENSMICG00000031653) #36
Lemuriformes_a	ANCESTRAL SPECIES	25	ENSGT00390000018541	ENSGT00390000010157.b	ENSGT00940000160377	ENSGT00390000008862	ENSGT00940000158445 #7	ENSGT00940000155764.C #8	ENSGT00530000063679.B #9	ENSGT00940000156719 #11	ENSGT00940000158178 #13	ENSGT00940000159089 #14	ENSGT00940000159801.B #15	ENSGT00390000005605 #16	ENSGT00530000063000.a.a.b #17	ENSGT00940000159543 #19	ENSGT00940000159788.b #21	ENSGT00390000013443.c #22	ENSGT00940000159869 #23	ENSGT00940000159005	ENSGT00940000160550 #24	ENSGT00940000161143 #25	ENSGT00470000042444 #26	ENSGT00940000162184 #27	ENSGT00940000162431 #28	ENSGT00940000162311 #29	ENSGT00390000014512 #30	ENSGT01050000244887.A.a.a.b #31	ENSGT00390000005100 #33	ENSGT00510000047802 #34	ENSGT01030000234518.C.a.a	ENSGT00530000064158 #35	ENSGT00940000160969 #36
Coquerels sifaka	MODERN SPECIES	226	TIMM29 (ENSPCOG00000016566)	YIPF2 (ENSPCOG00000007218)	CARM1 (ENSPCOG00000018916)	C19orf38 (ENSPCOG00000027100)	TMED1 (ENSPCOG00000011779) #7	DNM2 (ENSPCOG00000025201) #8	QTRT1 (ENSPCOG00000017773) #9	ILF3 (ENSPCOG00000019611) #11	SLC44A2 (ENSPCOG00000017229) #13	AP1M2 (ENSPCOG00000025286) #14	CDKN2D (ENSPCOG00000018426) #15	KRI1 (ENSPCOG00000004012) #16	ATG4D (ENSPCOG00000018567) #17	KEAP1 (ENSPCOG00000026076) #19	PDE4A (ENSPCOG00000024879) #21	CDC37 (ENSPCOG00000015827) #22	TYK2 (ENSPCOG00000007085) #23	ICAM3 (ENSPCOG00000015812)	RAVER1 (ENSPCOG00000026605) #24	FDX2 (ENSPCOG00000019514) #25	ZGLP1 (ENSPCOG00000016482) #26	ICAM5 (ENSPCOG00000028361) #27	ICAM4 (ENSPCOG00000024827) #28	ICAM1 (ENSPCOG00000020759) #29	MRPL4 (ENSPCOG00000016733) #30	DNMT1 (ENSPCOG00000018383) #33	EIF3G (ENSPCOG00000022779) #34	P2RY11 (ENSPCOG00000018623)	PPAN (ENSPCOG00000027096) #35	ANGPTL6 (ENSPCOG00000025263) #36	SHFL (ENSPCOG00000025048) #37
Greater bamboo lemur	DUPLICATION
Greater bamboo lemur	MODERN SPECIES	1592										AP1M2 (ENSPSMG00000018790) #14	CDKN2D (ENSPSMG00000018726) #15	KRI1 (ENSPSMG00000018724) #16	ATG4D (ENSPSMG00000018715) #17	KEAP1 (ENSPSMG00000018702) #19	PDE4A (ENSPSMG00000018693) #21	CDC37 (ENSPSMG00000018638) #22	TYK2 (ENSPSMG00000018540) #23	ICAM3 (ENSPSMG00000018423)	RAVER1 (ENSPSMG00000018368) #24	FDX2 (ENSPSMG00000018302) #25	ENSPSMG00000018299 #26	ICAM5 (ENSPSMG00000018287) #27	ICAM4 (ENSPSMG00000018274) #28	ENSPSMG00000018266 #29	ENSPSMG00000018263
Greater bamboo lemur	MODERN SPECIES	736	ZC3H6 (ENSPSMG00000016566)	ZC3H8 (ENSPSMG00000016584)	FBLN7 (ENSPSMG00000016676)	TMEM87B (ENSPSMG00000016707)	ENSPSMG00000016713	MERTK (ENSPSMG00000016754)	ANAPC1 (ENSPSMG00000016822)	ENSPSMG00000016838	BCL2L11 (ENSPSMG00000016863)	ACOXL (ENSPSMG00000016917)	BUB1 (ENSPSMG00000017019)	ENSPSMG00000017144	SULT1C2 (ENSPSMG00000017191)	MTLN (ENSPSMG00000017200)	NPHP1 (ENSPSMG00000017287)	ENSPSMG00000017313 #22	MALL (ENSPSMG00000017319)	MAL (ENSPSMG00000017345)	MRPS5 (ENSPSMG00000017370)	ZNF514 (ENSPSMG00000017389)	ZNF2 (ENSPSMG00000017411)	ZNF892 (ENSPSMG00000017416)	PROM2 (ENSPSMG00000017426)	KCNIP3 (ENSPSMG00000017440)	ENSPSMG00000017447	FAHD2A (ENSPSMG00000017479)	GPAT2 (ENSPSMG00000017521)	ADRA2B (ENSPSMG00000017526)	ASTL (ENSPSMG00000017531)	DUSP2 (ENSPSMG00000017544)	STARD7 (ENSPSMG00000017558)
Euarchontoglires_A	ANCESTRAL SPECIES	20	ENSGT00940000160377	ENSGT00390000008862	ENSGT00940000158445 #7	ENSGT00940000155764.C #8	ENSGT00530000063679.B #9	ENSGT00940000156719 #11	ENSGT00900000143551	ENSGT00940000158178 #13	ENSGT00940000159089 #14	ENSGT00940000159801.B #15	ENSGT00390000005605 #16	ENSGT00530000063000.a.a.b #17	ENSGT01050000244887.A.a.a.a #18	ENSGT00940000159543 #19	ENSGT00940000159788.b #21	ENSGT00390000013443.c #22	ENSGT00940000159869 #23	ENSGT00940000159005	ENSGT00940000160550 #24	ENSGT00940000161143 #25	ENSGT00470000042444 #26	ENSGT00940000162184 #27	ENSGT00940000162431 #28	ENSGT00940000162311 #29	ENSGT00390000014512 #30	ENSGT01050000244887.A.a.a.b #31	ENSGT00940000172524	ENSGT00390000005100 #33	ENSGT00510000047802 #34	ENSGT01030000234518.C.a.a	ENSGT00530000064158 #35
Tree shrew	MODERN SPECIES	86														KEAP1 (ENSTBEG00000009989) #19	PDE4A (ENSTBEG00000009756) #21	CDC37 (ENSTBEG00000017686) #22	TYK2 (ENSTBEG00000017582) #23	ICAM3 (ENSTBEG00000017449)	ENSTBEG00000017176 #24	ENSTBEG00000017141	ICAM5 (ENSTBEG00000016938) #27
Glires	ANCESTRAL SPECIES	21	ENSGT00940000160377	ENSGT00390000008862	ENSGT00940000158445 #7	ENSGT00940000155764.C #8	ENSGT00530000063679.B #9	ENSGT00940000156719 #11	ENSGT00900000143551	ENSGT00940000158178 #13	ENSGT00940000159089 #14	ENSGT00940000159801.B #15	ENSGT00390000005605 #16	ENSGT00530000063000.a.a.b #17	ENSGT01050000244887.A.a.a.a #18	ENSGT00940000159543 #19	ENSGT00940000159788.b #21	ENSGT00390000013443.c #22	ENSGT00940000159869 #23	ENSGT00940000159005	ENSGT00940000160550 #24	ENSGT00940000161143 #25	ENSGT00470000042444 #26	ENSGT00940000162184 #27	ENSGT00940000162431 #28	ENSGT00940000162311 #29	ENSGT00390000014512 #30	ENSGT01050000244887.A.a.a.b #31	ENSGT00940000172524	ENSGT00390000005100 #33	ENSGT00510000047802 #34	ENSGT01030000234518.C.a.a	ENSGT00530000064158 #35
Lagomorpha	ANCESTRAL SPECIES																	ENSGT00390000013443.c #22
Pika	MODERN SPECIES	5513																CDC37 (ENSOPRG00000003603) #22
Rodentia	ANCESTRAL SPECIES	17	ENSGT00940000160377	ENSGT00390000008862	ENSGT00940000158445 #7	ENSGT00940000155764.C #8	ENSGT00530000063679.B #9	ENSGT00940000156719 #11	ENSGT00900000143551	ENSGT00940000158178 #13	ENSGT00940000159089 #14	ENSGT00940000159801.B #15	ENSGT00390000005605 #16	ENSGT00530000063000.a.a.b #17	ENSGT01050000244887.A.a.a.a #18	ENSGT00940000159543 #19	ENSGT00940000159788.b #21	ENSGT00390000013443.c #22	ENSGT00940000159869 #23	ENSGT00940000159005	ENSGT00940000160550 #24	ENSGT00940000161143 #25	ENSGT00470000042444 #26	ENSGT00940000162184 #27	ENSGT00940000162431 #28	ENSGT00940000162311 #29	ENSGT00390000014512 #30	ENSGT01050000244887.A.a.a.b #31	ENSGT00940000172524	ENSGT00390000005100 #33	ENSGT00510000047802 #34	ENSGT01030000234518.C.a.a	ENSGT00530000064158 #35
Rodentia_A	ANCESTRAL SPECIES	16	ENSGT00940000160377	ENSGT00390000008862	ENSGT00940000158445 #7	ENSGT00940000155764.C #8	ENSGT00530000063679.B #9	ENSGT00940000156719 #11	ENSGT00900000143551	ENSGT00940000158178 #13	ENSGT00940000159089 #14	ENSGT00940000159801.B #15	ENSGT00390000005605 #16	ENSGT00530000063000.a.a.b #17	ENSGT01050000244887.A.a.a.a #18	ENSGT00940000159543 #19	ENSGT00940000159788.b #21	ENSGT00390000013443.c #22	ENSGT00940000159869 #23	ENSGT00940000159005	ENSGT00940000160550 #24	ENSGT00940000161143 #25	ENSGT00470000042444 #26	ENSGT00940000162184 #27	ENSGT00940000162431 #28	ENSGT00940000162311 #29	ENSGT00390000014512 #30	ENSGT01050000244887.A.a.a.b #31	ENSGT00940000172524	ENSGT00390000005100 #33	ENSGT00510000047802 #34	ENSGT01030000234518.C.a.a	ENSGT00530000064158 #35
Sciuridae	ANCESTRAL SPECIES	20	ENSGT00940000160377	ENSGT00390000008862	ENSGT00940000158445 #7	ENSGT00940000155764.C #8	ENSGT00530000063679.B #9	ENSGT00940000156719 #11	ENSGT00900000143551	ENSGT00940000158178 #13	ENSGT00940000159089 #14	ENSGT00940000159801.B #15	ENSGT00390000005605 #16	ENSGT00530000063000.a.a.b #17	ENSGT01050000244887.A.a.a.a #18	ENSGT00940000159543 #19	ENSGT00940000159788.b #21	ENSGT00390000013443.c #22	ENSGT00940000159869 #23	ENSGT00940000159005	ENSGT00940000160550 #24	ENSGT00940000161143.b #25	ENSGT00470000042444 #26	ENSGT00940000162184 #27	ENSGT00940000162431 #28	ENSGT00940000162311 #29	ENSGT00390000014512 #30	ENSGT01050000244887.A.a.a.b #31	ENSGT00390000005100 #33	ENSGT00510000047802 #34	ENSGT01030000234518.C.a.a	ENSGT00530000064158 #35	ENSGT00940000160969 #36
Marmotini	ANCESTRAL SPECIES	41	ENSGT00390000010157.b	ENSGT00940000160377	ENSGT00390000008862	ENSGT00940000158445 #7	ENSGT00940000155764.C #8	ENSGT00530000063679.B #9	ENSGT00940000156719 #11	ENSGT00940000158178 #13	ENSGT00940000159089 #14	ENSGT00940000159801.B #15	ENSGT00390000005605 #16	ENSGT00530000063000.a.a.b #17	ENSGT01050000244887.A.a.a.a #18	ENSGT00940000159543 #19	ENSGT00940000159788.b #21	ENSGT00390000013443.c #22	ENSGT00940000159869 #23	ENSGT00940000159005	ENSGT00940000160550 #24	ENSGT00940000161143.b #25	ENSGT00470000042444 #26	ENSGT00940000162184 #27	ENSGT00940000162431 #28	ENSGT00940000162311 #29	ENSGT00390000014512 #30	ENSGT01050000244887.A.a.a.b #31	ENSGT00390000005100 #33	ENSGT00510000047802 #34	ENSGT01030000234518.C.a.a	ENSGT00530000064158 #35	ENSGT00940000160969 #36
Alpin marmot	MODERN SPECIES	24	YIPF2 (ENSMMMG00000019805)	CARM1 (ENSMMMG00000019799)	C19orf38 (ENSMMMG00000019779)	TMED1 (ENSMMMG00000019775) #7	DNM2 (ENSMMMG00000019573) #8	QTRT1 (ENSMMMG00000019561) #9	ILF3 (ENSMMMG00000019155) #11	SLC44A2 (ENSMMMG00000019127) #13	AP1M2 (ENSMMMG00000019106) #14	ENSMMMG00000019102	KRI1 (ENSMMMG00000019036) #16	ATG4D (ENSMMMG00000018985) #17	ENSMMMG00000018981 #18	KEAP1 (ENSMMMG00000018969) #19	PDE4A (ENSMMMG00000017967) #21	CDC37 (ENSMMMG00000017941) #22	TYK2 (ENSMMMG00000017895) #23	ICAM3 (ENSMMMG00000017891)	RAVER1 (ENSMMMG00000017883) #24	FDX2 (ENSMMMG00000017878) #25	ENSMMMG00000017874 #26	ICAM5 (ENSMMMG00000017859) #27	ICAM4 (ENSMMMG00000017853) #28	ICAM1 (ENSMMMG00000017017) #29	MRPL4 (ENSMMMG00000017010) #30	S1PR2 (ENSMMMG00000017008) #31	DNMT1 (ENSMMMG00000015887) #33	ENSMMMG00000015867 #34	P2RY11 (ENSMMMG00000015865)	PPAN (ENSMMMG00000015833) #35	ANGPTL6 (ENSMMMG00000015819) #36
Marmotini_b	ANCESTRAL SPECIES	40	ENSGT00390000010157.b	ENSGT00940000160377	ENSGT00390000008862	ENSGT00940000158445 #7	ENSGT00940000155764.C #8	ENSGT00530000063679.B #9	ENSGT00940000156719 #11	ENSGT00940000158178 #13	ENSGT00940000159089 #14	ENSGT00940000159801.B #15	ENSGT00390000005605 #16	ENSGT00530000063000.a.a.b #17	ENSGT01050000244887.A.a.a.a #18	ENSGT00940000159543 #19	ENSGT00940000159788.b #21	ENSGT00390000013443.c #22	ENSGT00940000159869 #23	ENSGT00940000159005	ENSGT00940000160550 #24	ENSGT00940000161143.b #25	ENSGT00470000042444 #26	ENSGT00940000162184 #27	ENSGT00940000162431 #28	ENSGT00940000162311 #29	ENSGT00390000014512 #30	ENSGT01050000244887.A.a.a.b #31	ENSGT00390000005100 #33	ENSGT00510000047802 #34	ENSGT01030000234518.C.a.a	ENSGT00530000064158 #35	ENSGT00940000160969 #36
Squirrel	MODERN SPECIES	259	YIPF2 (ENSSTOG00000007905)	CARM1 (ENSSTOG00000007864)	C19orf38 (ENSSTOG00000024893)	TMED1 (ENSSTOG00000023250) #7	DNM2 (ENSSTOG00000007826) #8	QTRT1 (ENSSTOG00000020466) #9	ILF3 (ENSSTOG00000007786) #11	SLC44A2 (ENSSTOG00000007737) #13	AP1M2 (ENSSTOG00000007719) #14	ENSSTOG00000023338 #15	KRI1 (ENSSTOG00000007660) #16	ATG4D (ENSSTOG00000023750) #17	S1PR5 (ENSSTOG00000024850) #18	KEAP1 (ENSSTOG00000010114) #19	PDE4A (ENSSTOG00000027947) #21	CDC37 (ENSSTOG00000015962) #22	TYK2 (ENSSTOG00000003264) #23	RAVER1 (ENSSTOG00000003241) #24	FDX2 (ENSSTOG00000008207) #25	ZGLP1 (ENSSTOG00000021194) #26	ICAM5 (ENSSTOG00000008181) #27	ICAM4 (ENSSTOG00000019729) #28	ICAM1 (ENSSTOG00000031629) #29	MRPL4 (ENSSTOG00000030121) #30	S1PR2 (ENSSTOG00000022687) #31	DNMT1 (ENSSTOG00000010841) #33	EIF3G (ENSSTOG00000027655) #34	P2RY11 (ENSSTOG00000010839)	PPAN (ENSSTOG00000010828) #35	ANGPTL6 (ENSSTOG00000028080) #36	SHFL (ENSSTOG00000026700) #37
Arctic ground squirrel	MODERN SPECIES	217	YIPF2 (ENSUPAG00010003190)	CARM1 (ENSUPAG00010003160)	C19orf38 (ENSUPAG00010003139)	TMED1 (ENSUPAG00010003125) #7	DNM2 (ENSUPAG00010002497) #8	QTRT1 (ENSUPAG00010002480) #9	ILF3 (ENSUPAG00010002202) #11	SLC44A2 (ENSUPAG00010002115) #13	AP1M2 (ENSUPAG00010002081) #14	CDKN2D (ENSUPAG00010002067) #15	KRI1 (ENSUPAG00010002031) #16	ATG4D (ENSUPAG00010002014) #17	ENSUPAG00010002004 #18	KEAP1 (ENSUPAG00010001991) #19	PDE4A (ENSUPAG00010001873) #21	CDC37 (ENSUPAG00010001857) #22	TYK2 (ENSUPAG00010001822) #23	ICAM3 (ENSUPAG00010001065)	RAVER1 (ENSUPAG00010001012) #24	FDX2 (ENSUPAG00010001004) #25	ZGLP1 (ENSUPAG00010000992) #26	ICAM5 (ENSUPAG00010000960) #27	ICAM4 (ENSUPAG00010000954) #28	ICAM1 (ENSUPAG00010000950) #29	MRPL4 (ENSUPAG00010000934) #30	S1PR2 (ENSUPAG00010000933) #31	DNMT1 (ENSUPAG00010000182) #33	EIF3G (ENSUPAG00010000146) #34	P2RY11 (ENSUPAG00010000138)	PPAN (ENSUPAG00010000094) #35	ANGPTL6 (ENSUPAG00010000091) #36
Eurasian red squirrel	MODERN SPECIES	7	CARM1 (ENSSVLG00005022155)	C19orf38 (ENSSVLG00005022088)	TMED1 (ENSSVLG00005022048) #7	DNM2 (ENSSVLG00005021854) #8	QTRT1 (ENSSVLG00005021743) #9	ILF3 (ENSSVLG00005021649) #11	ENSSVLG00005021542	SLC44A2 (ENSSVLG00005021433) #13	ENSSVLG00005021219 #14	CDKN2D (ENSSVLG00005021167) #15	KRI1 (ENSSVLG00005020995) #16	ATG4D (ENSSVLG00005020947) #17	S1PR5 (ENSSVLG00005020921) #18	KEAP1 (ENSSVLG00005020889) #19	PDE4A (ENSSVLG00005020638) #21	CDC37 (ENSSVLG00005020567) #22	TYK2 (ENSSVLG00005020519) #23	ICAM3 (ENSSVLG00005020483)	RAVER1 (ENSSVLG00005020415) #24	FDX2 (ENSSVLG00005020343) #25	ZGLP1 (ENSSVLG00005020288) #26	ICAM5 (ENSSVLG00005020255) #27	ICAM4 (ENSSVLG00005020213) #28	ICAM1 (ENSSVLG00005020131) #29	MRPL4 (ENSSVLG00005020006) #30	S1PR2 (ENSSVLG00005019959) #31	DNMT1 (ENSSVLG00005019922) #33	EIF3G (ENSSVLG00005019867) #34	P2RY11 (ENSSVLG00005019829)	PPAN (ENSSVLG00005019747) #35	ANGPTL6 (ENSSVLG00005019674) #36
Hystricomorpha	ANCESTRAL SPECIES	19	ENSGT00940000160377	ENSGT00390000008862	ENSGT00940000158445 #7	ENSGT00940000155764.C #8	ENSGT00530000063679.B #9	ENSGT00940000156719 #11	ENSGT00940000158178 #13	ENSGT00900000143551	ENSGT00940000159089 #14	ENSGT00940000159801.B #15	ENSGT00390000005605 #16	ENSGT00530000063000.a.a.b #17	ENSGT01050000244887.A.a.a.a #18	ENSGT00940000159543 #19	ENSGT00940000159788.b #21	ENSGT00390000013443.c #22	ENSGT00940000159869 #23	ENSGT00940000159005	ENSGT00940000160550 #24	ENSGT00940000161143 #25	ENSGT00470000042444 #26	ENSGT00940000162184 #27	ENSGT00940000162431 #28	ENSGT00940000162311 #29	ENSGT00390000014512 #30	ENSGT01050000244887.A.a.a.b #31	ENSGT00940000172524	ENSGT00390000005100 #33	ENSGT00510000047802 #34	ENSGT01030000234518.C.a.a	ENSGT00530000064158 #35
Naked mole-rat female	MODERN SPECIES	21	C19orf38 (ENSHGLG00000048163)	TMED1 (ENSHGLG00000034031) #7	DNM2 (ENSHGLG00000014318) #8	QTRT1 (ENSHGLG00000018553) #9	ENSHGLG00000019494 #11	ENSHGLG00000036847	SLC44A2 (ENSHGLG00000011332) #13	ENSHGLG00000044071	AP1M2 (ENSHGLG00000017835) #14	CDKN2D (ENSHGLG00000013311) #15	KRI1 (ENSHGLG00000015240) #16	ATG4D (ENSHGLG00000007086) #17	S1PR5 (ENSHGLG00000045386) #18	KEAP1 (ENSHGLG00000015222) #19	PDE4A (ENSHGLG00000015878) #21	CDC37 (ENSHGLG00000050693) #22	TYK2 (ENSHGLG00000015161) #23	ICAM3 (ENSHGLG00000040279)	RAVER1 (ENSHGLG00000015460) #24	FDX2 (ENSHGLG00000018345) #25	ZGLP1 (ENSHGLG00000043835) #26	ICAM5 (ENSHGLG00000015929) #27	ICAM4 (ENSHGLG00000042569) #28	ICAM1 (ENSHGLG00000010281) #29	S1PR2 (ENSHGLG00000041926) #31	MRPL4 (ENSHGLG00000007839) #30	ENSHGLG00000037635	DNMT1 (ENSHGLG00000018262) #33	EIF3G (ENSHGLG00000009901) #34	P2RY11 (ENSHGLG00000042365)	PPAN (ENSHGLG00000006964) #35
Hystricomorpha_a	ANCESTRAL SPECIES	15	ENSGT00390000010157.b	ENSGT00940000160377	ENSGT00390000008862	ENSGT00940000158445 #7	ENSGT00940000155764.C #8	ENSGT00530000063679.B #9	ENSGT00940000156719 #11	ENSGT00940000158178 #13	ENSGT00940000159089 #14	ENSGT00940000159801.B #15	ENSGT00390000005605 #16	ENSGT00530000063000.a.a.b #17	ENSGT01050000244887.A.a.a.a #18	ENSGT00940000159543 #19	ENSGT00940000159788.b #21	ENSGT00390000013443.c #22	ENSGT00940000159869 #23	ENSGT00940000160550 #24	ENSGT00940000161143 #25	ENSGT00470000042444 #26	ENSGT00940000162184 #27	ENSGT00940000162431 #28	ENSGT00940000162311 #29	ENSGT00390000014512 #30	ENSGT01050000244887.A.a.a.b #31	ENSGT00390000005100 #33	ENSGT00510000047802 #34	ENSGT00530000064158 #35	ENSGT00940000160969 #36	ENSGT00390000005065 #37	ENSGT00940000155412.b
Guinea pig	MODERN SPECIES	274														KEAP1 (ENSCPOG00000038105) #19	PDE4A (ENSCPOG00000024714) #21	CDC37 (ENSCPOG00000031053) #22	TYK2 (ENSCPOG00000004366) #23	RAVER1 (ENSCPOG00000001008) #24	FDX2 (ENSCPOG00000001005) #25	ZGLP1 (ENSCPOG00000020181) #26	ICAM5 (ENSCPOG00000000999) #27	MRPL4 (ENSCPOG00000006506) #30	S1PR2 (ENSCPOG00000035775) #31	DNMT1 (ENSCPOG00000019557) #33	P2RY11 (ENSCPOG00000021178)	EIF3G (ENSCPOG00000009365) #34	PPAN (ENSCPOG00000025539) #35	SHFL (ENSCPOG00000019761) #37	ANGPTL6 (ENSCPOG00000001748) #36	RDH8 (ENSCPOG00000020452)
Hystricomorpha_b	ANCESTRAL SPECIES	17	ENSGT00390000010157.b	ENSGT00940000160377	ENSGT00390000008862	ENSGT00940000158445 #7	ENSGT00940000155764.C #8	ENSGT00530000063679.B #9	ENSGT00940000156719 #11	ENSGT00940000158178 #13	ENSGT00940000159089 #14	ENSGT00940000159801.B #15	ENSGT00390000005605 #16	ENSGT00530000063000.a.a.b #17	ENSGT01050000244887.A.a.a.a #18	ENSGT00940000159543 #19	ENSGT00940000159788.b #21	ENSGT00390000013443.c #22	ENSGT00940000159869 #23	ENSGT00940000160550 #24	ENSGT00940000161143 #25	ENSGT00470000042444 #26	ENSGT00940000162184 #27	ENSGT00940000162431 #28	ENSGT00940000162311 #29	ENSGT00390000014512 #30	ENSGT01050000244887.A.a.a.b #31	ENSGT00390000005100 #33	ENSGT00510000047802 #34	ENSGT00530000064158 #35	ENSGT00940000160969 #36	ENSGT00390000005065 #37	ENSGT00940000155412.b
Long-tailed chinchilla	MODERN SPECIES	202	YIPF2 (ENSCLAG00000011701)	CARM1 (ENSCLAG00000011012)	C19orf38 (ENSCLAG00000009782)	TMED1 (ENSCLAG00000008870) #7	DNM2 (ENSCLAG00000008156) #8	QTRT1 (ENSCLAG00000009859) #9	ILF3 (ENSCLAG00000011537) #11	SLC44A2 (ENSCLAG00000017339) #13	AP1M2 (ENSCLAG00000015388) #14	CDKN2D (ENSCLAG00000016365) #15	KRI1 (ENSCLAG00000006582) #16	ATG4D (ENSCLAG00000004668) #17	S1PR5 (ENSCLAG00000011673) #18	KEAP1 (ENSCLAG00000011003) #19	PDE4A (ENSCLAG00000005445) #21	CDC37 (ENSCLAG00000004550) #22	TYK2 (ENSCLAG00000013417) #23	RAVER1 (ENSCLAG00000009336) #24	FDX2 (ENSCLAG00000007657) #25	ZGLP1 (ENSCLAG00000006578) #26	ICAM5 (ENSCLAG00000004832) #27	ICAM4 (ENSCLAG00000006269) #28	ICAM1 (ENSCLAG00000005350) #29	MRPL4 (ENSCLAG00000004552) #30	S1PR2 (ENSCLAG00000017915) #31	DNMT1 (ENSCLAG00000009575) #33	EIF3G (ENSCLAG00000007381) #34	PPAN (ENSCLAG00000009362) #35	ANGPTL6 (ENSCLAG00000008492) #36	SHFL (ENSCLAG00000007234) #37	RDH8 (ENSCLAG00000008572)
Degu	MODERN SPECIES	91	YIPF2 (ENSODEG00000015957)	CARM1 (ENSODEG00000015950)	C19orf38 (ENSODEG00000015704)	TMED1 (ENSODEG00000016351) #7	DNM2 (ENSODEG00000016299) #8	QTRT1 (ENSODEG00000015894) #9	ILF3 (ENSODEG00000015951) #11	SLC44A2 (ENSODEG00000016516) #13	AP1M2 (ENSODEG00000016673) #14	CDKN2D (ENSODEG00000016627) #15	KRI1 (ENSODEG00000016083) #16	ATG4D (ENSODEG00000016344) #17	S1PR5 (ENSODEG00000020555) #18	KEAP1 (ENSODEG00000016128) #19	PDE4A (ENSODEG00000016246) #21	CDC37 (ENSODEG00000016453) #22	TYK2 (ENSODEG00000016347) #23	RAVER1 (ENSODEG00000016260) #24	FDX2 (ENSODEG00000016614) #25	ENSODEG00000016522 #26	ICAM5 (ENSODEG00000016352) #27	ICAM4 (ENSODEG00000016513) #28	ICAM1 (ENSODEG00000016545) #29	MRPL4 (ENSODEG00000016194) #30	S1PR2 (ENSODEG00000020460) #31	DNMT1 (ENSODEG00000016929) #33	ENSODEG00000016542 #34	PPAN (ENSODEG00000016743) #35	ANGPTL6 (ENSODEG00000016263) #36	SHFL (ENSODEG00000016467) #37	RDH8 (ENSODEG00000016686)
Rodentia_B	ANCESTRAL SPECIES	42	ENSGT00390000010157.b	ENSGT00940000160377	ENSGT00390000008862	ENSGT00940000158445 #7	ENSGT00940000155764.C #8	ENSGT00530000063679.B #9	ENSGT00940000156719 #11	ENSGT00940000158178 #13	ENSGT00940000159089 #14	ENSGT00940000159801.B #15	ENSGT00390000005605 #16	ENSGT00530000063000.a.a.b #17	ENSGT01050000244887.A.a.a.a #18	ENSGT00940000159543 #19	ENSGT00940000159788.b #21	ENSGT00390000013443.c #22	ENSGT00940000159869 #23	ENSGT00940000160550 #24	ENSGT00940000161143 #25	ENSGT00470000042444 #26	ENSGT00940000162184 #27	ENSGT00940000162431 #28	ENSGT00940000162311 #29	ENSGT00390000014512 #30	ENSGT01050000244887.A.a.a.b #31	ENSGT00390000005100 #33	ENSGT00510000047802 #34	ENSGT00530000064158 #35	ENSGT01030000234518.C.a.a	ENSGT00940000160969 #36	ENSGT00390000005065 #37
Myomorpha	ANCESTRAL SPECIES	51	ENSGT00390000010157.b	ENSGT00940000160377	ENSGT00390000008862	ENSGT00940000158445 #7	ENSGT00940000155764.C #8	ENSGT00530000063679.B #9	ENSGT00940000156719 #11	ENSGT00940000158178 #13	ENSGT00940000159089 #14	ENSGT00940000159801.B #15	ENSGT00390000005605 #16	ENSGT00530000063000.a.a.b #17	ENSGT01050000244887.A.a.a.a #18	ENSGT00940000159543 #19	ENSGT00940000159788.b #21	ENSGT00390000013443.c #22	ENSGT00940000159869 #23	ENSGT00940000160550 #24	ENSGT00940000161143 #25	ENSGT00470000042444 #26	ENSGT00940000162184 #27	ENSGT00940000162431 #28	ENSGT00940000162311 #29	ENSGT00390000014512 #30	ENSGT01050000244887.A.a.a.b #31	ENSGT00390000005100 #33	ENSGT00510000047802 #34	ENSGT00530000064158 #35	ENSGT01030000234518.C.a.a	ENSGT00940000160969 #36	ENSGT00390000005065 #37
Muroidea	ANCESTRAL SPECIES	58	ENSGT00390000010157.b	ENSGT00940000160377	ENSGT00390000008862	ENSGT00940000158445 #7	ENSGT00940000155764.C #8	ENSGT00530000063679.B #9	ENSGT00940000156719 #11	ENSGT00940000158178 #13	ENSGT00940000159089 #14	ENSGT00940000159801.B #15	ENSGT00390000005605 #16	ENSGT00530000063000.a.a.b #17	ENSGT01050000244887.A.a.a.a #18	ENSGT00940000159543 #19	ENSGT00940000159788.b #21	ENSGT00390000013443.c #22	ENSGT00940000159869 #23	ENSGT00940000160550 #24	ENSGT00940000161143 #25	ENSGT00470000042444 #26	ENSGT00940000162184 #27	ENSGT00940000162431 #28	ENSGT00940000162311 #29	ENSGT00390000014512 #30	ENSGT01050000244887.A.a.a.b #31	ENSGT00390000005100 #33	ENSGT00510000047802 #34	ENSGT00530000064158 #35	ENSGT01030000234518.C.a.a	ENSGT00940000160969 #36	ENSGT00390000005065 #37
Muroidea_A	ANCESTRAL SPECIES	23	ENSGT00390000010157.b	ENSGT00940000160377	ENSGT00390000008862	ENSGT00940000158445 #7	ENSGT00940000155764.C #8	ENSGT00530000063679.B #9	ENSGT00940000156719 #11	ENSGT00940000158178 #13	ENSGT00940000159089 #14	ENSGT00940000159801.B #15	ENSGT00390000005605 #16	ENSGT00530000063000.a.a.b #17	ENSGT01050000244887.A.a.a.a #18	ENSGT00940000159543 #19	ENSGT00940000159788.b #21	ENSGT00390000013443.c #22	ENSGT00940000159869 #23	ENSGT00940000160550 #24	ENSGT00940000161143 #25	ENSGT00470000042444 #26	ENSGT00940000162184 #27	ENSGT00940000162431 #28	ENSGT00940000162311 #29	ENSGT00390000014512 #30	ENSGT01050000244887.A.a.a.b #31	ENSGT00390000005100 #33	ENSGT00510000047802 #34	ENSGT00530000064158 #35	ENSGT01030000234518.C.a.a	ENSGT00940000160969 #36	ENSGT00390000005065 #37
Murinae	ANCESTRAL SPECIES	3	ENSGT00390000010157.b	ENSGT00940000160377	ENSGT00390000008862	ENSGT00940000158445 #7	ENSGT00940000155764.C #8	ENSGT00530000063679.B #9	ENSGT00940000156719 #11	ENSGT00940000158178 #13	ENSGT00940000159089 #14	ENSGT00940000159801.B #15	ENSGT00390000005605 #16	ENSGT00530000063000.a.a.b #17	ENSGT01050000244887.A.a.a.a #18	ENSGT00940000159543 #19	ENSGT00940000159788.b #21	ENSGT00390000013443.c #22	ENSGT00940000159869 #23	ENSGT00940000160550 #24	ENSGT00940000161143 #25	ENSGT00470000042444 #26	ENSGT00940000162184 #27	ENSGT00940000162431 #28	ENSGT00940000162311 #29	ENSGT00390000014512 #30	ENSGT01050000244887.A.a.a.b #31	ENSGT00390000005100 #33	ENSGT00510000047802 #34	ENSGT00530000064158 #35	ENSGT00940000160969 #36	ENSGT00390000005065 #37	ENSGT00940000155412.b
Mus	ANCESTRAL SPECIES	4	ENSGT00390000010157.b	ENSGT00940000160377	ENSGT00390000008862	ENSGT00940000158445 #7	ENSGT00940000155764.C #8	ENSGT00530000063679.B #9	ENSGT00940000156719 #11	ENSGT00940000158178 #13	ENSGT00940000159089 #14	ENSGT00940000159801.B #15	ENSGT00390000005605 #16	ENSGT00530000063000.a.a.b #17	ENSGT01050000244887.A.a.a.a #18	ENSGT00940000159543 #19	ENSGT00940000159788.b #21	ENSGT00390000013443.c #22	ENSGT00940000159869 #23	ENSGT00940000160550 #24	ENSGT00940000161143 #25	ENSGT00470000042444 #26	ENSGT00940000162184 #27	ENSGT00940000162431 #28	ENSGT00940000162311 #29	ENSGT00390000014512 #30	ENSGT01050000244887.A.a.a.b #31	ENSGT00390000005100 #33	ENSGT00510000047802 #34	ENSGT00530000064158 #35	ENSGT00940000160969 #36	ENSGT00390000005065 #37	ENSGT00940000155412.b
Mus_A	ANCESTRAL SPECIES	4	ENSGT00390000010157.b	ENSGT00940000160377	ENSGT00390000008862	ENSGT00940000158445 #7	ENSGT00940000155764.C #8	ENSGT00530000063679.B #9	ENSGT00940000156719 #11	ENSGT00940000158178 #13	ENSGT00940000159089 #14	ENSGT00940000159801.B #15	ENSGT00390000005605 #16	ENSGT00530000063000.a.a.b #17	ENSGT01050000244887.A.a.a.a #18	ENSGT00940000159543 #19	ENSGT00940000159788.b #21	ENSGT00390000013443.c #22	ENSGT00940000159869 #23	ENSGT00940000160550 #24	ENSGT00940000161143 #25	ENSGT00470000042444 #26	ENSGT00940000162184 #27	ENSGT00940000162431 #28	ENSGT00940000162311 #29	ENSGT00390000014512 #30	ENSGT01050000244887.A.a.a.b #31	ENSGT00390000005100 #33	ENSGT00510000047802 #34	ENSGT00530000064158 #35	ENSGT00940000160969 #36	ENSGT00390000005065 #37	ENSGT00940000155412.b
Mus_B	ANCESTRAL SPECIES	3	ENSGT00390000010157.b	ENSGT00940000160377	ENSGT00390000008862	ENSGT00940000158445 #7	ENSGT00940000155764.C #8	ENSGT00530000063679.B #9	ENSGT00940000156719 #11	ENSGT00940000158178 #13	ENSGT00940000159089 #14	ENSGT00940000159801.B #15	ENSGT00390000005605 #16	ENSGT00530000063000.a.a.b #17	ENSGT01050000244887.A.a.a.a #18	ENSGT00940000159543 #19	ENSGT00940000159788.b #21	ENSGT00390000013443.c #22	ENSGT00940000159869 #23	ENSGT00940000160550 #24	ENSGT00940000161143.c #25	ENSGT00470000042444 #26	ENSGT00940000162184 #27	ENSGT00940000162431 #28	ENSGT00940000162311 #29	ENSGT00390000014512 #30	ENSGT01050000244887.A.a.a.b #31	ENSGT00390000005100 #33	ENSGT00510000047802 #34	ENSGT00530000064158 #35	ENSGT00940000160969 #36	ENSGT00390000005065 #37	ENSGT00940000155412.b
Mouse	MODERN SPECIES	18	Yipf2 (ENSMUSG00000032182)	Carm1 (ENSMUSG00000032185)	AB124611 (ENSMUSG00000057191)	Tmed1 (ENSMUSG00000032180) #7	Dnm2 (ENSMUSG00000033335) #8	Qtrt1 (ENSMUSG00000002825) #9	Ilf3 (ENSMUSG00000032178) #11	Slc44a2 (ENSMUSG00000057193) #13	Ap1m2 (ENSMUSG00000003309) #14	Cdkn2d (ENSMUSG00000096472) #15	Kri1 (ENSMUSG00000035047) #16	Atg4d (ENSMUSG00000002820) #17	S1pr5 (ENSMUSG00000045087) #18	Keap1 (ENSMUSG00000003308) #19	Pde4a (ENSMUSG00000032177) #21	Cdc37 (ENSMUSG00000019471) #22	Tyk2 (ENSMUSG00000032175) #23	Raver1 (ENSMUSG00000010205) #24	Fdx2 (ENSMUSG00000079677) #25	Zglp1 (ENSMUSG00000079681) #26	Icam5 (ENSMUSG00000032174) #27	Icam4 (ENSMUSG00000001014) #28	Icam1 (ENSMUSG00000037405) #29	Mrpl4 (ENSMUSG00000003299) #30	S1pr2 (ENSMUSG00000043895) #31	Dnmt1 (ENSMUSG00000004099) #33	Eif3g (ENSMUSG00000070319) #34	Ppan (ENSMUSG00000004100) #35	Angptl6 (ENSMUSG00000038742) #36	Shfl (ENSMUSG00000038884) #37	Rdh8 (ENSMUSG00000053773)
Mus_C	ANCESTRAL SPECIES	8	ENSGT00390000010157.b	ENSGT00940000160377	ENSGT00390000008862	ENSGT00940000158445 #7	ENSGT00940000155764.C #8	ENSGT00530000063679.B #9	ENSGT00940000156719 #11	ENSGT00940000158178 #13	ENSGT00940000159089 #14	ENSGT00940000159801.B #15	ENSGT00390000005605 #16	ENSGT00530000063000.a.a.b #17	ENSGT01050000244887.A.a.a.a #18	ENSGT00940000159543 #19	ENSGT00940000159788.b #21	ENSGT00390000013443.c #22	ENSGT00940000159869 #23	ENSGT00940000160550 #24	ENSGT00940000161143.c #25	ENSGT00470000042444 #26	ENSGT00940000162184 #27	ENSGT00940000162431 #28	ENSGT00940000162311 #29	ENSGT00390000014512 #30	ENSGT01050000244887.A.a.a.b #31	ENSGT00390000005100 #33	ENSGT00510000047802 #34	ENSGT00530000064158 #35	ENSGT00940000160969 #36	ENSGT00390000005065 #37	ENSGT00940000155412.b
spretus	MODERN SPECIES	18	Yipf2 (MGP_SPRETEiJ_G0033001)	Carm1 (MGP_SPRETEiJ_G0033000)	AB124611 (MGP_SPRETEiJ_G0032999)	Tmed1 (MGP_SPRETEiJ_G0032998) #7	Dnm2 (MGP_SPRETEiJ_G0032997) #8	Qtrt1 (MGP_SPRETEiJ_G0032996) #9	Ilf3 (MGP_SPRETEiJ_G0032995) #11	Slc44a2 (MGP_SPRETEiJ_G0032994) #13	Ap1m2 (MGP_SPRETEiJ_G0032993) #14	Cdkn2d (MGP_SPRETEiJ_G0032992) #15	Kri1 (MGP_SPRETEiJ_G0032991) #16	Atg4d (MGP_SPRETEiJ_G0032990) #17	S1pr5 (MGP_SPRETEiJ_G0032989) #18	Keap1 (MGP_SPRETEiJ_G0032988) #19	Pde4a (MGP_SPRETEiJ_G0032987) #21	Cdc37 (MGP_SPRETEiJ_G0032986) #22	Tyk2 (MGP_SPRETEiJ_G0032985) #23	Raver1 (MGP_SPRETEiJ_G0032984) #24	Fdx2 (MGP_SPRETEiJ_G0032983) #25	Zglp1 (MGP_SPRETEiJ_G0032982) #26	Icam5 (MGP_SPRETEiJ_G0032981) #27	Icam4 (MGP_SPRETEiJ_G0032980) #28	Icam1 (MGP_SPRETEiJ_G0032979) #29	Mrpl4 (MGP_SPRETEiJ_G0032978) #30	S1pr2 (MGP_SPRETEiJ_G0032977) #31	Dnmt1 (MGP_SPRETEiJ_G0032976) #33	Eif3g (MGP_SPRETEiJ_G0032975) #34	Ppan (MGP_SPRETEiJ_G0032974) #35	Angptl6 (MGP_SPRETEiJ_G0032973) #36	Shfl (MGP_SPRETEiJ_G0032972) #37	Rdh8 (MGP_SPRETEiJ_G0032971)
Steppe mouse	MODERN SPECIES	3115	Carm1 (ENSMSIG00000015744)	Yipf2 (ENSMSIG00000015831)	AB124611 (ENSMSIG00000015890)	Tmed1 (ENSMSIG00000015965) #7	Dnm2 (ENSMSIG00000015982) #8	Qtrt1 (ENSMSIG00000016262) #9	Ilf3 (ENSMSIG00000016302) #11	Slc44a2 (ENSMSIG00000016395) #13	Ap1m2 (ENSMSIG00000016529) #14	Cdkn2d (ENSMSIG00000016582) #15	Kri1 (ENSMSIG00000016603) #16	Atg4d (ENSMSIG00000016653) #17	S1pr5 (ENSMSIG00000016710) #18	Keap1 (ENSMSIG00000016713) #19	Pde4a (ENSMSIG00000016751) #21	Cdc37 (ENSMSIG00000016922) #22	Tyk2 (ENSMSIG00000016941) #23	Raver1 (ENSMSIG00000017020) #24	Fdx2 (ENSMSIG00000017053) #25	Zglp1 (ENSMSIG00000017087) #26	Icam5 (ENSMSIG00000017102) #27	Icam4 (ENSMSIG00000017145) #28	Icam1 (ENSMSIG00000017165) #29	Mrpl4 (ENSMSIG00000017179) #30	S1pr2 (ENSMSIG00000017197) #31	Dnmt1 (ENSMSIG00000017200) #33	Eif3g (ENSMSIG00000017537) #34	Ppan (ENSMSIG00000017577) #35	Angptl6 (ENSMSIG00000017615) #36	Shfl (ENSMSIG00000017630) #37	Rdh8 (ENSMSIG00000017665)
Ryukyu mouse	MODERN SPECIES	18	Yipf2 (MGP_CAROLIEiJ_G0031877)	Carm1 (MGP_CAROLIEiJ_G0031876)	AB124611 (MGP_CAROLIEiJ_G0031875)	Tmed1 (MGP_CAROLIEiJ_G0031874) #7	Dnm2 (MGP_CAROLIEiJ_G0031873) #8	Qtrt1 (MGP_CAROLIEiJ_G0031872) #9	Ilf3 (MGP_CAROLIEiJ_G0031871) #11	Slc44a2 (MGP_CAROLIEiJ_G0031870) #13	Ap1m2 (MGP_CAROLIEiJ_G0031869) #14	Cdkn2d (MGP_CAROLIEiJ_G0031868) #15	Kri1 (MGP_CAROLIEiJ_G0031867) #16	Atg4d (MGP_CAROLIEiJ_G0031866) #17	S1pr5 (MGP_CAROLIEiJ_G0031865) #18	Keap1 (MGP_CAROLIEiJ_G0031864) #19	Pde4a (MGP_CAROLIEiJ_G0031863) #21	Cdc37 (MGP_CAROLIEiJ_G0031862) #22	Tyk2 (MGP_CAROLIEiJ_G0031861) #23	Raver1 (MGP_CAROLIEiJ_G0031860) #24	Fdx2 (MGP_CAROLIEiJ_G0031859) #25	Zglp1 (MGP_CAROLIEiJ_G0031858) #26	Icam5 (MGP_CAROLIEiJ_G0031857) #27	Icam4 (MGP_CAROLIEiJ_G0031856) #28	Icam1 (MGP_CAROLIEiJ_G0031855) #29	Mrpl4 (MGP_CAROLIEiJ_G0031854) #30	S1pr2 (MGP_CAROLIEiJ_G0031853) #31	Dnmt1 (MGP_CAROLIEiJ_G0031852) #33	Eif3g (MGP_CAROLIEiJ_G0031851) #34	Ppan (MGP_CAROLIEiJ_G0031850) #35	Angptl6 (MGP_CAROLIEiJ_G0031849) #36	Shfl (MGP_CAROLIEiJ_G0031848) #37	Rdh8 (MGP_CAROLIEiJ_G0031847)
Shrew mouse	MODERN SPECIES	1	Yipf2 (MGP_PahariEiJ_G0014743)	Carm1 (MGP_PahariEiJ_G0014742)	AB124611 (MGP_PahariEiJ_G0014741)	Tmed1 (MGP_PahariEiJ_G0014740) #7	Dnm2 (MGP_PahariEiJ_G0014739) #8	Qtrt1 (MGP_PahariEiJ_G0014738) #9	Ilf3 (MGP_PahariEiJ_G0014737) #11	Slc44a2 (MGP_PahariEiJ_G0014736) #13	Ap1m2 (MGP_PahariEiJ_G0014735) #14	Cdkn2d (MGP_PahariEiJ_G0014734) #15	Kri1 (MGP_PahariEiJ_G0014733) #16	Atg4d (MGP_PahariEiJ_G0014732) #17	S1pr5 (MGP_PahariEiJ_G0014731) #18	Keap1 (MGP_PahariEiJ_G0014730) #19	Pde4a (MGP_PahariEiJ_G0014729) #21	Cdc37 (MGP_PahariEiJ_G0014728) #22	Tyk2 (MGP_PahariEiJ_G0014727) #23	Raver1 (MGP_PahariEiJ_G0014726) #24	Fdx2 (MGP_PahariEiJ_G0014725) #25	Zglp1 (MGP_PahariEiJ_G0014724) #26	Icam5 (MGP_PahariEiJ_G0014723) #27	Icam4 (MGP_PahariEiJ_G0014722) #28	Icam1 (MGP_PahariEiJ_G0014721) #29	Mrpl4 (MGP_PahariEiJ_G0014720) #30	S1pr2 (MGP_PahariEiJ_G0014719) #31	Dnmt1 (MGP_PahariEiJ_G0014718) #33	Eif3g (MGP_PahariEiJ_G0014717) #34	Ppan (MGP_PahariEiJ_G0014716) #35	Angptl6 (MGP_PahariEiJ_G0014715) #36	Shfl (MGP_PahariEiJ_G0014714) #37	Rdh8 (MGP_PahariEiJ_G0014713)
Rat	MODERN SPECIES	18	Yipf2 (ENSRNOG00000022043)	Carm1 (ENSRNOG00000031129)	LOC691141 (ENSRNOG00000033256)	Tmed1 (ENSRNOG00000008037) #7	Dnm2 (ENSRNOG00000007649) #8	Qtrt1 (ENSRNOG00000007158) #9	Ilf3 (ENSRNOG00000022741) #11	Slc44a2 (ENSRNOG00000031824) #13	Ap1m2 (ENSRNOG00000043093) #14	Cdkn2d (ENSRNOG00000064248) #15	Kri1 (ENSRNOG00000057447) #16	Atg4d (ENSRNOG00000047625) #17	S1pr5 (ENSRNOG00000020901) #18	Keap1 (ENSRNOG00000020878) #19	Pde4a (ENSRNOG00000020828) #21	Cdc37 (ENSRNOG00000033426) #22	Tyk2 (ENSRNOG00000032948) #23	Raver1 (ENSRNOG00000020710) #24	Fdx2 (ENSRNOG00000023020) #25	Zglp1 (ENSRNOG00000042601) #26	Icam5 (ENSRNOG00000020694) #27	Icam4 (ENSRNOG00000042078) #28	Icam1 (ENSRNOG00000020679) #29	Mrpl4 (ENSRNOG00000020659) #30	S1pr2 (ENSRNOG00000020653) #31	Dnmt1 (ENSRNOG00000039859) #33	Eif3g (ENSRNOG00000020619) #34	Ppan (ENSRNOG00000020608) #35	Angptl6 (ENSRNOG00000020603) #36	Shfl (ENSRNOG00000020580) #37	Rdh8 (ENSRNOG00000025767)
Cricetidae	ANCESTRAL SPECIES	4	ENSGT00390000010157.b	ENSGT00940000160377	ENSGT00390000008862	ENSGT00940000158445 #7	ENSGT00940000155764.C #8	ENSGT00530000063679.B #9	ENSGT00940000156719 #11	ENSGT00940000158178 #13	ENSGT00940000159089 #14	ENSGT00940000159801.B #15	ENSGT00390000005605 #16	ENSGT00530000063000.a.a.b #17	ENSGT01050000244887.A.a.a.a #18	ENSGT00940000159543 #19	ENSGT00940000159788.b #21	ENSGT00390000013443.c #22	ENSGT00940000159869 #23	ENSGT00940000160550 #24	ENSGT00940000161143 #25	ENSGT00470000042444 #26	ENSGT00940000162184 #27	ENSGT00940000162431 #28	ENSGT00940000162311 #29	ENSGT00390000014512 #30	ENSGT01050000244887.A.a.a.b #31	ENSGT00390000005100 #33	ENSGT00510000047802 #34	ENSGT00530000064158 #35	ENSGT01030000234518.C.a.a	ENSGT00940000160969 #36	ENSGT00390000005065 #37
Cricetinae	ANCESTRAL SPECIES	30	ENSGT00390000010157.b	ENSGT00940000160377	ENSGT00390000008862	ENSGT00940000158445 #7	ENSGT00940000155764.C #8	ENSGT00530000063679.B #9	ENSGT00940000156719 #11	ENSGT00940000158178 #13	ENSGT00940000159089 #14	ENSGT00940000159801.B #15	ENSGT00390000005605 #16	ENSGT00530000063000.a.a.b #17	ENSGT01050000244887.A.a.a.a #18	ENSGT00940000159543 #19	ENSGT00940000159788.b #21	ENSGT00390000013443.c #22	ENSGT00940000159869 #23	ENSGT00940000160550 #24	ENSGT00940000161143 #25	ENSGT00470000042444 #26	ENSGT00940000162184 #27	ENSGT00940000162431 #28	ENSGT00940000162311 #29	ENSGT00390000014512 #30	ENSGT01050000244887.A.a.a.b #31	ENSGT00390000005100 #33	ENSGT00510000047802 #34	ENSGT00530000064158 #35	ENSGT00940000160969 #36	ENSGT00390000005065 #37	ENSGT00940000155412.b
Chinese hamster chok1gshd	DUPLICATION
Chinese hamster chok1gshd	MODERN SPECIES	189	Yipf2 (ENSCGRG00001005089)	Carm1 (ENSCGRG00001023212)	AB124611 (ENSCGRG00001019412)	Tmed1 (ENSCGRG00001018097) #7	Dnm2 (ENSCGRG00001015804) #8	Qtrt1 (ENSCGRG00001001152) #9	Ilf3 (ENSCGRG00001021577) #11	Slc44a2 (ENSCGRG00001014087) #13	Ap1m2 (ENSCGRG00001020691) #14	Cdkn2d (ENSCGRG00001019561) #15	Kri1 (ENSCGRG00001018764) #16	Atg4d (ENSCGRG00001017644) #17	S1pr5 (ENSCGRG00001009679) #18	Keap1 (ENSCGRG00001016562) #19	Pde4a (ENSCGRG00001014442) #21	ENSCGRG00001017764 #22	Tyk2 (ENSCGRG00001016315) #23	Raver1 (ENSCGRG00001013260) #24	Fdx2 (ENSCGRG00001012584) #25	Zglp1 (ENSCGRG00001002376) #26	Icam5 (ENSCGRG00001000449) #27	Icam4 (ENSCGRG00001018219) #28	Icam1 (ENSCGRG00001015045) #29	Mrpl4 (ENSCGRG00001013642) #30	S1pr2 (ENSCGRG00001016552) #31	Dnmt1 (ENSCGRG00001022275) #33	EIF3G (ENSCGRG00001017726) #34	Ppan (ENSCGRG00001015990) #35	Angptl6 (ENSCGRG00001015238) #36	Shfl (ENSCGRG00001014258) #37	Rdh8 (ENSCGRG00001012909)
Chinese hamster chok1gshd	MODERN SPECIES	188	Tlk1 (ENSCGRG00001022409)	Mettl8 (ENSCGRG00001016757)	Dcaf17 (ENSCGRG00001011719)	Cybrd1 (ENSCGRG00001004905)	Dync1i2 (ENSCGRG00001000739)	Slc25a12 (ENSCGRG00001008427)	Hat1 (ENSCGRG00001005351)	Metap1d (ENSCGRG00001002792)	Dlx1 (ENSCGRG00001001323)	Dlx2 (ENSCGRG00001000503)	Itga6 (ENSCGRG00001017916)	ENSCGRG00001016131	Rapgef4 (ENSCGRG00001015061)	Map3k20 (ENSCGRG00001013908)	Cdca7 (ENSCGRG00001013059)	ENSCGRG00001009149 #22	ENSCGRG00001005867	ENSCGRG00001003688	Ola1 (ENSCGRG00001001469)	Sp9 (ENSCGRG00001024896)	Cir1 (ENSCGRG00001015518)	Scrn3 (ENSCGRG00001014709)	Gpr155 (ENSCGRG00001014219)	ENSCGRG00001021853	Chrna1 (ENSCGRG00001020291)	ENSCGRG00001019803	Chn1 (ENSCGRG00001019152)	Atf2 (ENSCGRG00001015584)	Atp5g3 (ENSCGRG00001012041)	Lnpk (ENSCGRG00001011515)	ENSCGRG00001006802
Golden Hamster	MODERN SPECIES	700	Yipf2 (ENSMAUG00000019367)	Carm1 (ENSMAUG00000020443)	Tmed1 (ENSMAUG00000008835) #7	ENSMAUG00000013381 #8	ENSMAUG00000019307 #8	Qtrt1 (ENSMAUG00000020794) #9	Ilf3 (ENSMAUG00000020405) #11	Slc44a2 (ENSMAUG00000010847) #13	Ap1m2 (ENSMAUG00000012894) #14	Cdkn2d (ENSMAUG00000001161) #15	Kri1 (ENSMAUG00000011484) #16	Atg4d (ENSMAUG00000020205) #17	S1pr5 (ENSMAUG00000000259) #18	Keap1 (ENSMAUG00000007914) #19	Pde4a (ENSMAUG00000013828) #21	Cdc37 (ENSMAUG00000008486) #22	Tyk2 (ENSMAUG00000017865) #23	Raver1 (ENSMAUG00000017948) #24	Fdx2 (ENSMAUG00000016958) #25	Zglp1 (ENSMAUG00000000170) #26	Icam5 (ENSMAUG00000001262) #27	Icam4 (ENSMAUG00000002833) #28	Icam1 (ENSMAUG00000006369) #29	Mrpl4 (ENSMAUG00000013451) #30	S1pr2 (ENSMAUG00000016946) #31	Dnmt1 (ENSMAUG00000019579) #33	Eif3g (ENSMAUG00000003373) #34	Ppan (ENSMAUG00000000310) #35	Angptl6 (ENSMAUG00000005463) #36	Shfl (ENSMAUG00000017892) #37	ENSMAUG00000019806
Cricetidae_B	ANCESTRAL SPECIES	16	ENSGT00390000010157.b	ENSGT00940000160377	ENSGT00390000008862	ENSGT00940000158445 #7	ENSGT00940000155764.C #8	ENSGT00530000063679.B #9	ENSGT00940000156719 #11	ENSGT00940000158178 #13	ENSGT00940000159089 #14	ENSGT00940000159801.B #15	ENSGT00390000005605 #16	ENSGT00530000063000.a.a.b #17	ENSGT01050000244887.A.a.a.a #18	ENSGT00940000159543 #19	ENSGT00940000159788.b #21	ENSGT00390000013443.c #22	ENSGT00940000159869 #23	ENSGT00940000160550 #24	ENSGT00940000161143 #25	ENSGT00470000042444 #26	ENSGT00940000162184 #27	ENSGT00940000162431 #28	ENSGT00940000162311 #29	ENSGT00390000014512 #30	ENSGT01050000244887.A.a.a.b #31	ENSGT00390000005100 #33	ENSGT00510000047802 #34	ENSGT00530000064158 #35	ENSGT01030000234518.C.a.a	ENSGT00940000160969 #36	ENSGT00390000005065 #37
Northern American deer mouse	MODERN SPECIES	20	Yipf2 (ENSPEMG00000022941)	Carm1 (ENSPEMG00000023286)	AB124611 (ENSPEMG00000011218)	Tmed1 (ENSPEMG00000014342) #7	Dnm2 (ENSPEMG00000022844) #8	Qtrt1 (ENSPEMG00000009897) #9	ENSPEMG00000000465 #11	Slc44a2 (ENSPEMG00000008320) #13	Ap1m2 (ENSPEMG00000023352) #14	Cdkn2d (ENSPEMG00000030087) #15	Kri1 (ENSPEMG00000024201) #16	Atg4d (ENSPEMG00000004633) #17	S1pr5 (ENSPEMG00000015460) #18	Keap1 (ENSPEMG00000022907) #19	Pde4a (ENSPEMG00000023071) #21	Cdc37 (ENSPEMG00000023710) #22	Tyk2 (ENSPEMG00000011071) #23	Raver1 (ENSPEMG00000016411) #24	Fdx2 (ENSPEMG00000023101) #25	Zglp1 (ENSPEMG00000023438) #26	Icam5 (ENSPEMG00000008387) #27	Icam4 (ENSPEMG00000023979) #28	Icam1 (ENSPEMG00000024025) #29	Mrpl4 (ENSPEMG00000017474) #30	S1pr2 (ENSPEMG00000030885) #31	ENSPEMG00000004880 #33	Eif3g (ENSPEMG00000001978) #34	Ppan (ENSPEMG00000015393) #35	ENSPEMG00000029942	Angptl6 (ENSPEMG00000010885) #36	Shfl (ENSPEMG00000013975) #37
Prairie vole	MODERN SPECIES	13	Yipf2 (ENSMOCG00000017806)	Carm1 (ENSMOCG00000004215)	AB124611 (ENSMOCG00000014256)	Tmed1 (ENSMOCG00000007785) #7	Dnm2 (ENSMOCG00000018580) #8	Qtrt1 (ENSMOCG00000019584) #9	Ilf3 (ENSMOCG00000018740) #11	Slc44a2 (ENSMOCG00000014267) #13	Ap1m2 (ENSMOCG00000000638) #14	Cdkn2d (ENSMOCG00000016257) #15	Kri1 (ENSMOCG00000017013) #16	Atg4d (ENSMOCG00000002959) #17	S1pr5 (ENSMOCG00000005836) #18	Keap1 (ENSMOCG00000009445) #19	Pde4a (ENSMOCG00000007095) #21	Cdc37 (ENSMOCG00000020700) #22	Tyk2 (ENSMOCG00000017994) #23	Raver1 (ENSMOCG00000015553) #24	Fdx2 (ENSMOCG00000014317) #25	Zglp1 (ENSMOCG00000011301) #26	Icam5 (ENSMOCG00000002626) #27	Icam4 (ENSMOCG00000019163) #28	ENSMOCG00000013950	Icam1 (ENSMOCG00000013230) #29	Mrpl4 (ENSMOCG00000014755) #30	S1pr2 (ENSMOCG00000013385) #31	Dnmt1 (ENSMOCG00000013903) #33	ENSMOCG00000016861 #34	Ppan (ENSMOCG00000016402) #35	Angptl6 (ENSMOCG00000012813) #36	Shfl (ENSMOCG00000012138) #37
Upper Galilee mountains blind mole rat	MODERN SPECIES	1514			ENSNGAG00000001659	Tmed1 (ENSNGAG00000004594) #7	Dnm2 (ENSNGAG00000016299) #8	Qtrt1 (ENSNGAG00000012294) #9	ENSNGAG00000009786 #11	Slc44a2 (ENSNGAG00000000063) #13	Ap1m2 (ENSNGAG00000013508) #14	Cdkn2d (ENSNGAG00000020636) #15	Kri1 (ENSNGAG00000000508) #16	Atg4d (ENSNGAG00000000291) #17	S1pr5 (ENSNGAG00000011944) #18	Keap1 (ENSNGAG00000012825) #19	Pde4a (ENSNGAG00000016357) #21	Cdc37 (ENSNGAG00000017380) #22	Tyk2 (ENSNGAG00000003917) #23	Raver1 (ENSNGAG00000001260) #24	Fdx2 (ENSNGAG00000009605) #25	Zglp1 (ENSNGAG00000015996) #26	Icam5 (ENSNGAG00000017094) #27	Icam4 (ENSNGAG00000001140) #28	Icam1 (ENSNGAG00000014166) #29	Mrpl4 (ENSNGAG00000014705) #30	S1pr2 (ENSNGAG00000000186) #31	Dnmt1 (ENSNGAG00000010277) #33	Eif3g (ENSNGAG00000012159) #34	Ppan (ENSNGAG00000012813) #35	Angptl6 (ENSNGAG00000016395) #36	Shfl (ENSNGAG00000000044) #37
Lesser Egyptian jerboa	MODERN SPECIES	143	Yipf2 (ENSJJAG00000010227)	Carm1 (ENSJJAG00000008047)	AB124611 (ENSJJAG00000002332)	Tmed1 (ENSJJAG00000018485) #7	Dnm2 (ENSJJAG00000015316) #8	Qtrt1 (ENSJJAG00000013307) #9	ENSJJAG00000013051 #11	Slc44a2 (ENSJJAG00000011453) #13	Ap1m2 (ENSJJAG00000009862) #14	Cdkn2d (ENSJJAG00000008566) #15	Kri1 (ENSJJAG00000002972) #16	Atg4d (ENSJJAG00000000341) #17	S1pr5 (ENSJJAG00000013383) #18	Keap1 (ENSJJAG00000000119) #19	Pde4a (ENSJJAG00000022269) #21	Cdc37 (ENSJJAG00000021223) #22	Tyk2 (ENSJJAG00000020250) #23	Raver1 (ENSJJAG00000018219) #24	Fdx2 (ENSJJAG00000017700) #25	Zglp1 (ENSJJAG00000017375) #26	Icam5 (ENSJJAG00000016403) #27	Icam4 (ENSJJAG00000016127) #28	Icam1 (ENSJJAG00000014180) #29	Mrpl4 (ENSJJAG00000010573) #30	ENSJJAG00000013403	S1pr2 (ENSJJAG00000013342) #31	ENSJJAG00000009832	Dnmt1 (ENSJJAG00000021067) #33	Eif3g (ENSJJAG00000017602) #34	Ppan (ENSJJAG00000016362) #35	Angptl6 (ENSJJAG00000018763) #36
Kangaroo rat	MODERN SPECIES	498	Timm29 (ENSDORG00000013397)	Yipf2 (ENSDORG00000013396)	Carm1 (ENSDORG00000013395)	AB124611 (ENSDORG00000013393)	Tmed1 (ENSDORG00000025876) #7	Dnm2 (ENSDORG00000015234) #8	Qtrt1 (ENSDORG00000015233) #9	Ilf3 (ENSDORG00000015231) #11	Slc44a2 (ENSDORG00000011152) #13	Ap1m2 (ENSDORG00000013447) #14	Kri1 (ENSDORG00000013443) #16	Atg4d (ENSDORG00000013442) #17	ENSDORG00000028548	Keap1 (ENSDORG00000013598) #19	Pde4a (ENSDORG00000013594) #21	Cdc37 (ENSDORG00000029470) #22	Tyk2 (ENSDORG00000010102) #23	Raver1 (ENSDORG00000010106) #24	Fdx2 (ENSDORG00000010108) #25	ENSDORG00000024999 #26	Icam4 (ENSDORG00000006167) #28	Icam1 (ENSDORG00000006170) #29	Mrpl4 (ENSDORG00000003723) #30	S1pr2 (ENSDORG00000012785) #31	Dnmt1 (ENSDORG00000014116) #33	Eif3g (ENSDORG00000003833) #34	Ppan (ENSDORG00000003829) #35	ENSDORG00000029931 #36	ENSDORG00000026660 #37	Rdh8 (ENSDORG00000014042)	Col5a3 (ENSDORG00000014029)
Laurasiatheria	ANCESTRAL SPECIES	15	ENSGT00390000008862	ENSGT00940000158445 #7	ENSGT00940000155764.C #8	ENSGT00530000063679.B #9	ENSGT00940000156719 #11	ENSGT01100000264612	ENSGT00940000158178 #13	ENSGT00900000143551	ENSGT00940000159089 #14	ENSGT00940000159801.B #15	ENSGT00390000005605 #16	ENSGT00530000063000.a.a.b #17	ENSGT01050000244887.A.a.a.a #18	ENSGT00940000159543 #19	ENSGT00940000159788.b #21	ENSGT00390000013443.c #22	ENSGT00940000159869 #23	ENSGT00940000159005	ENSGT00940000160550 #24	ENSGT00940000161143 #25	ENSGT00470000042444 #26	ENSGT00940000162184 #27	ENSGT00940000162431 #28	ENSGT00940000162311 #29	ENSGT00390000014512 #30	ENSGT01050000244887.A.a.a.b #31	ENSGT00390000005100 #33	ENSGT00510000047802 #34	ENSGT01030000234518.C.a.a	ENSGT00530000064158 #35	ENSGT00940000160969 #36
Laurasiatheria_a	ANCESTRAL SPECIES	19	ENSGT00390000008862	ENSGT00940000158445 #7	ENSGT00940000155764.C #8	ENSGT00530000063679.B #9	ENSGT00940000156719 #11	ENSGT01100000264612	ENSGT00940000158178 #13	ENSGT00900000143551	ENSGT00940000159089 #14	ENSGT00940000159801.B #15	ENSGT00390000005605 #16	ENSGT00530000063000.a.a.b #17	ENSGT01050000244887.A.a.a.a #18	ENSGT00940000159543 #19	ENSGT00940000159788.b #21	ENSGT00390000013443.c #22	ENSGT00940000159869 #23	ENSGT00940000159005	ENSGT00940000160550 #24	ENSGT00940000161143 #25	ENSGT00470000042444 #26	ENSGT00940000162184 #27	ENSGT00940000162431 #28	ENSGT00940000162311 #29	ENSGT00390000014512 #30	ENSGT01050000244887.A.a.a.b #31	ENSGT00390000005100 #33	ENSGT00510000047802 #34	ENSGT01030000234518.C.a.a	ENSGT00530000064158 #35	ENSGT00940000160969 #36
Artiodactyla	ANCESTRAL SPECIES	22	ENSGT00940000160377	ENSGT00390000008862	ENSGT00940000158445 #7	ENSGT00940000155764.C #8	ENSGT00530000063679.B #9	ENSGT00940000156719 #11	ENSGT00940000158178 #13	ENSGT00900000143551	ENSGT00940000159089 #14	ENSGT00940000159801.B #15	ENSGT00390000005605 #16	ENSGT00530000063000.a.a.b #17	ENSGT01050000244887.A.a.a.a #18	ENSGT00940000159543 #19	ENSGT00940000159788.b #21	ENSGT00390000013443.c #22	ENSGT00940000159869 #23	ENSGT00940000159005	ENSGT00940000160550 #24	ENSGT00940000161143 #25	ENSGT00470000042444 #26	ENSGT00940000162184 #27	ENSGT00940000162431 #28	ENSGT00940000162311 #29	ENSGT00390000014512 #30	ENSGT01050000244887.A.a.a.b #31	ENSGT00390000005100 #33	ENSGT00510000047802 #34	ENSGT01030000234518.C.a.a	ENSGT00530000064158 #35	ENSGT00940000160969 #36
Suina	ANCESTRAL SPECIES	16	ENSGT00390000010157.b	ENSGT00940000160377	ENSGT00390000008862	ENSGT00940000158445 #7	ENSGT00940000155764.C #8	ENSGT00530000063679.B #9	ENSGT00940000156719 #11	ENSGT00940000158178 #13	ENSGT00940000159089 #14	ENSGT00940000159801.B #15	ENSGT00390000005605 #16	ENSGT00530000063000.a.a.b #17	ENSGT01050000244887.A.a.a.a #18	ENSGT00940000159543 #19	ENSGT00940000159788.b #21	ENSGT00390000013443.c #22	ENSGT00940000159869 #23	ENSGT00940000159005	ENSGT00940000160550 #24	ENSGT00940000161143 #25	ENSGT00470000042444 #26	ENSGT00940000162184 #27	ENSGT00940000162431 #28	ENSGT00940000162311 #29	ENSGT00390000014512 #30	ENSGT01050000244887.A.a.a.b #31	ENSGT00390000005100 #33	ENSGT00510000047802 #34	ENSGT01030000234518.C.a.a	ENSGT00530000064158 #35	ENSGT00940000160969 #36
Chacoan peccary	MODERN SPECIES	770	YIPF2 (ENSCWAG00000019426)	CARM1 (ENSCWAG00000019487)	C19orf38 (ENSCWAG00000019636)	TMED1 (ENSCWAG00000019663) #7	DNM2 (ENSCWAG00000019692) #8	QTRT1 (ENSCWAG00000019852) #9	ILF3 (ENSCWAG00000019885) #11	SLC44A2 (ENSCWAG00000019968) #13	AP1M2 (ENSCWAG00000020120) #14	CDKN2D (ENSCWAG00000020167) #15	KRI1 (ENSCWAG00000003660) #16	ATG4D (ENSCWAG00000003684) #17	S1PR5 (ENSCWAG00000003701) #18	KEAP1 (ENSCWAG00000003719) #19	PDE4A (ENSCWAG00000003784) #21	CDC37 (ENSCWAG00000004120) #22	TYK2 (ENSCWAG00000004159) #23	ENSCWAG00000004200	RAVER1 (ENSCWAG00000004238) #24	FDX2 (ENSCWAG00000004322) #25	ENSCWAG00000004336 #26	ICAM5 (ENSCWAG00000004370) #27	ICAM4 (ENSCWAG00000004447) #28	ICAM1 (ENSCWAG00000004470) #29	MRPL4 (ENSCWAG00000004503) #30	S1PR2 (ENSCWAG00000004569) #31	DNMT1 (ENSCWAG00000004600) #33	EIF3G (ENSCWAG00000004694) #34	P2RY11 (ENSCWAG00000004744)	PPAN (ENSCWAG00000004764) #35	ANGPTL6 (ENSCWAG00000004802) #36
Pig	MODERN SPECIES	10	YIPF2 (ENSSSCG00000013634)	CARM1 (ENSSSCG00000013633)	C19orf38 (ENSSSCG00000013632)	TMED1 (ENSSSCG00000038623) #7	DNM2 (ENSSSCG00000013630) #8	QTRT1 (ENSSSCG00000013637) #9	ILF3 (ENSSSCG00000013638) #11	SLC44A2 (ENSSSCG00000013639) #13	AP1M2 (ENSSSCG00000025838) #14	CDKN2D (ENSSSCG00000013643) #15	KRI1 (ENSSSCG00000013644) #16	ATG4D (ENSSSCG00000013645) #17	S1PR5 (ENSSSCG00000028460) #18	KEAP1 (ENSSSCG00000023667) #19	PDE4A (ENSSSCG00000013642) #21	CDC37 (ENSSSCG00000013647) #22	TYK2 (ENSSSCG00000013648) #23	ICAM3 (ENSSSCG00000013649)	RAVER1 (ENSSSCG00000013650) #24	FDX2 (ENSSSCG00000062738) #25	ZGLP1 (ENSSSCG00000025754) #26	ICAM5 (ENSSSCG00000013653) #27	ICAM4 (ENSSSCG00000013654) #28	ICAM1 (ENSSSCG00000013655) #29	MRPL4 (ENSSSCG00000013656) #30	S1PR2 (ENSSSCG00000013658) #31	DNMT1 (ENSSSCG00000013659) #33	EIF3G (ENSSSCG00000013661) #34	P2RY11 (ENSSSCG00000024072)	PPAN (ENSSSCG00000013662) #35	ANGPTL6 (ENSSSCG00000013663) #36
Artiodactyla_a	ANCESTRAL SPECIES	23	ENSGT00940000160377	ENSGT00390000008862	ENSGT00940000158445 #7	ENSGT00940000155764.C #8	ENSGT00530000063679.B #9	ENSGT00940000156719 #11	ENSGT00940000158178 #13	ENSGT00900000143551	ENSGT00940000159089 #14	ENSGT00940000159801.B #15	ENSGT00390000005605 #16	ENSGT00530000063000.a.a.b #17	ENSGT01050000244887.A.a.a.a #18	ENSGT00940000159543 #19	ENSGT00940000159788.b #21	ENSGT00390000013443.c #22	ENSGT00940000159869 #23	ENSGT00940000159005	ENSGT00940000160550 #24	ENSGT00940000161143 #25	ENSGT00470000042444 #26	ENSGT00940000162184 #27	ENSGT00940000162431 #28	ENSGT00940000162311 #29	ENSGT00390000014512 #30	ENSGT01050000244887.A.a.a.b #31	ENSGT00390000005100 #33	ENSGT00510000047802 #34	ENSGT01030000234518.C.a.a	ENSGT00530000064158 #35	ENSGT00940000160969 #36
Camelidae	ANCESTRAL SPECIES	61	ENSGT00390000018541	ENSGT00390000010157.b	ENSGT00940000160377	ENSGT00390000008862	ENSGT00940000158445 #7	ENSGT00940000155764.C #8	ENSGT00530000063679.B #9	ENSGT00940000156719 #11	ENSGT00940000158178 #13	ENSGT00940000159089 #14	ENSGT00940000159801.B #15	ENSGT00530000063000.a.a.b #17	ENSGT01050000244887.A.a.a.a #18	ENSGT00940000159543 #19	ENSGT00940000159788.b #21	ENSGT00390000013443.c #22	ENSGT00940000159869 #23	ENSGT00940000159005	ENSGT00940000160550 #24	ENSGT00940000161143 #25	ENSGT00470000042444 #26	ENSGT00940000162184 #27	ENSGT00940000162431 #28	ENSGT00940000162311 #29	ENSGT00390000014512 #30	ENSGT01050000244887.A.a.a.b #31	ENSGT00390000005100 #33	ENSGT00510000047802 #34	ENSGT00530000064158 #35	ENSGT00940000160969 #36	ENSGT00390000005065.d #37
Arabian camel	MODERN SPECIES	14	TIMM29 (ENSCDRG00005010442)	YIPF2 (ENSCDRG00005010339)	CARM1 (ENSCDRG00005009567)	C19orf38 (ENSCDRG00005009399)	TMED1 (ENSCDRG00005009300) #7	DNM2 (ENSCDRG00005008985) #8	QTRT1 (ENSCDRG00005008893) #9	ILF3 (ENSCDRG00005008623) #11	SLC44A2 (ENSCDRG00005007784) #13	ENSCDRG00005007581 #14	CDKN2D (ENSCDRG00005007540) #15	ATG4D (ENSCDRG00005007407) #17	S1PR5 (ENSCDRG00005007394) #18	KEAP1 (ENSCDRG00005007359) #19	PDE4A (ENSCDRG00005007237) #21	CDC37 (ENSCDRG00005007169) #22	TYK2 (ENSCDRG00005007070) #23	ICAM3 (ENSCDRG00005007018)	RAVER1 (ENSCDRG00005006900) #24	FDX2 (ENSCDRG00005006823) #25	ENSCDRG00005006783 #26	ICAM5 (ENSCDRG00005006746) #27	ICAM4 (ENSCDRG00005006691) #28	ICAM1 (ENSCDRG00005006651) #29	MRPL4 (ENSCDRG00005006515) #30	S1PR2 (ENSCDRG00005006497) #31	DNMT1 (ENSCDRG00005006428) #33	EIF3G (ENSCDRG00005006325) #34	PPAN (ENSCDRG00005006218) #35	ANGPTL6 (ENSCDRG00005006190) #36	SHFL (ENSCDRG00005006144) #37
Artiodactyla_b	ANCESTRAL SPECIES	23	ENSGT00940000160377	ENSGT00390000008862	ENSGT00940000158445 #7	ENSGT00940000155764.C #8	ENSGT00530000063679.B #9	ENSGT00940000156719 #11	ENSGT00940000158178 #13	ENSGT00900000143551	ENSGT00940000159089 #14	ENSGT00940000159801.B #15	ENSGT00390000005605 #16	ENSGT00530000063000.a.a.b #17	ENSGT01050000244887.A.a.a.a #18	ENSGT00940000159543 #19	ENSGT00940000159788.b #21	ENSGT00390000013443.c #22	ENSGT00940000159869 #23	ENSGT00940000159005	ENSGT00940000160550 #24	ENSGT00940000161143 #25	ENSGT00470000042444 #26	ENSGT00940000162184 #27	ENSGT00940000162431 #28	ENSGT00940000162311 #29	ENSGT00390000014512 #30	ENSGT01050000244887.A.a.a.b #31	ENSGT00390000005100 #33	ENSGT00510000047802 #34	ENSGT01030000234518.C.a.a	ENSGT00530000064158 #35	ENSGT00940000160969 #36
Cetacea	ANCESTRAL SPECIES	1	ENSGT00940000160377	ENSGT00390000008862	ENSGT00940000158445 #7	ENSGT00940000155764.C #8	ENSGT00530000063679.B #9	ENSGT00940000156719 #11	ENSGT00940000158178 #13	ENSGT00900000143551	ENSGT00940000159089 #14	ENSGT00940000159801.B #15	ENSGT00390000005605 #16	ENSGT00530000063000.a.a.b #17	ENSGT01050000244887.A.a.a.a #18	ENSGT00940000159543 #19	ENSGT00940000159788.b #21	ENSGT00390000013443.c #22	ENSGT00940000159869 #23	ENSGT00940000159005	ENSGT00940000160550 #24	ENSGT00940000161143 #25	ENSGT00470000042444 #26	ENSGT00940000162184 #27	ENSGT00940000162431 #28	ENSGT00940000162311 #29	ENSGT00390000014512 #30	ENSGT01050000244887.A.a.a.b #31	ENSGT00390000005100 #33	ENSGT00510000047802 #34	ENSGT01030000234518.C.a.a	ENSGT00530000064158 #35	ENSGT00940000160969 #36
Odontoceti	ANCESTRAL SPECIES	1	ENSGT00940000160377	ENSGT00390000008862	ENSGT00940000158445 #7	ENSGT00940000155764.C #8	ENSGT00530000063679.B #9	ENSGT00940000156719 #11	ENSGT00940000158178 #13	ENSGT00900000143551	ENSGT00940000159089 #14	ENSGT00940000159801.B #15	ENSGT00390000005605 #16	ENSGT00530000063000.a.a.b #17	ENSGT01050000244887.A.a.a.a #18	ENSGT00940000159543 #19	ENSGT00940000159788.b #21	ENSGT00390000013443.c #22	ENSGT00940000159869 #23	ENSGT00940000159005	ENSGT00940000160550 #24	ENSGT00940000161143 #25	ENSGT00470000042444 #26	ENSGT00940000162184 #27	ENSGT00940000162431 #28	ENSGT00940000162311 #29	ENSGT00390000014512 #30	ENSGT01050000244887.A.a.a.b #31	ENSGT00390000005100 #33	ENSGT00510000047802 #34	ENSGT01030000234518.C.a.a	ENSGT00530000064158 #35	ENSGT00940000160969 #36
Odontoceti_a	ANCESTRAL SPECIES	1	ENSGT00390000010157.b	ENSGT00940000160377	ENSGT00390000008862	ENSGT00940000158445 #7	ENSGT00940000155764.C #8	ENSGT00530000063679.B #9	ENSGT00940000156719 #11	ENSGT00940000158178 #13	ENSGT00940000159089 #14	ENSGT00940000159801.B #15	ENSGT00390000005605 #16	ENSGT00530000063000.a.a.b #17	ENSGT01050000244887.A.a.a.a #18	ENSGT00940000159543 #19	ENSGT00940000159788.b #21	ENSGT00390000013443.c #22	ENSGT00940000159869 #23	ENSGT00940000159005	ENSGT00940000160550 #24	ENSGT00940000161143 #25	ENSGT00470000042444 #26	ENSGT00940000162184 #27	ENSGT00940000162431 #28	ENSGT00940000162311 #29	ENSGT00390000014512 #30	ENSGT01050000244887.A.a.a.b #31	ENSGT00390000005100 #33	ENSGT00510000047802 #34	ENSGT01030000234518.C.a.a	ENSGT00530000064158 #35	ENSGT00940000160969 #36
Dolphin	MODERN SPECIES	3266															PDE4A (ENSTTRG00000009561) #21	CDC37 (ENSTTRG00000009560) #22	TYK2 (ENSTTRG00000009555) #23	ICAM3 (ENSTTRG00000009554)	RAVER1 (ENSTTRG00000009552) #24	FDX2 (ENSTTRG00000009550) #25	ZGLP1 (ENSTTRG00000009549) #26	ICAM5 (ENSTTRG00000009546) #27	ENSTTRG00000009541 #28	ICAM1 (ENSTTRG00000009538) #29	MRPL4 (ENSTTRG00000009532) #30
Odontoceti_b	ANCESTRAL SPECIES	1	ENSGT00390000010157.b	ENSGT00940000160377	ENSGT00390000008862	ENSGT00940000158445 #7	ENSGT00940000155764.C #8	ENSGT00530000063679.B #9	ENSGT00940000156719 #11	ENSGT00940000158178 #13	ENSGT00940000159089 #14	ENSGT00940000159801.B #15	ENSGT00390000005605 #16	ENSGT00530000063000.a.a.b #17	ENSGT01050000244887.A.a.a.a #18	ENSGT00940000159543 #19	ENSGT00940000159788.b #21	ENSGT00390000013443.c #22	ENSGT00940000159869 #23	ENSGT00940000159005	ENSGT00940000160550 #24	ENSGT00940000161143 #25	ENSGT00470000042444 #26	ENSGT00940000162184 #27	ENSGT00940000162431 #28	ENSGT00940000162311 #29	ENSGT00390000014512 #30	ENSGT01050000244887.A.a.a.b #31	ENSGT00390000005100 #33	ENSGT00510000047802 #34	ENSGT01030000234518.C.a.a	ENSGT00530000064158 #35	ENSGT00940000160969 #36
Vaquita	MODERN SPECIES	14	CARM1 (ENSPSNG00000000745)	C19orf38 (ENSPSNG00000000687)	ENSPSNG00000000673	TMED1 (ENSPSNG00000000656) #7	DNM2 (ENSPSNG00000000544) #8	QTRT1 (ENSPSNG00000000385) #9	ILF3 (ENSPSNG00000000300) #11	SLC44A2 (ENSPSNG00000000222) #13	AP1M2 (ENSPSNG00000000086) #14	CDKN2D (ENSPSNG00000021264) #15	KRI1 (ENSPSNG00000021232) #16	ATG4D (ENSPSNG00000021190) #17	S1PR5 (ENSPSNG00000021161) #18	KEAP1 (ENSPSNG00000021144) #19	PDE4A (ENSPSNG00000020907) #21	CDC37 (ENSPSNG00000020799) #22	TYK2 (ENSPSNG00000020692) #23	ICAM3 (ENSPSNG00000020411)	RAVER1 (ENSPSNG00000020306) #24	FDX2 (ENSPSNG00000020258) #25	ENSPSNG00000020238 #26	ICAM5 (ENSPSNG00000020176) #27	ICAM4 (ENSPSNG00000020128) #28	ICAM1 (ENSPSNG00000020091) #29	MRPL4 (ENSPSNG00000020027) #30	S1PR2 (ENSPSNG00000019997) #31	DNMT1 (ENSPSNG00000019956) #33	ENSPSNG00000019916	EIF3G (ENSPSNG00000019875) #34	P2RY11 (ENSPSNG00000019859)	PPAN (ENSPSNG00000019833) #35
Monodontidae	ANCESTRAL SPECIES	17	ENSGT00390000010157.b	ENSGT00940000160377	ENSGT00390000008862	ENSGT00940000158445 #7	ENSGT00940000155764.C #8	ENSGT00530000063679.B #9	ENSGT00940000156719 #11	ENSGT00940000158178 #13	ENSGT00940000159089 #14	ENSGT00940000159801.B #15	ENSGT00390000005605 #16	ENSGT00530000063000.a.a.b #17	ENSGT01050000244887.A.a.a.a #18	ENSGT00940000159543 #19	ENSGT00940000159788.b #21	ENSGT00390000013443.c #22	ENSGT00940000159869 #23	ENSGT00940000159005	ENSGT00940000160550 #24	ENSGT00940000161143 #25	ENSGT00470000042444 #26	ENSGT00940000162184 #27	ENSGT00940000162431 #28	ENSGT00940000162311 #29	ENSGT00390000014512 #30	ENSGT01050000244887.A.a.a.b #31	ENSGT00390000005100 #33	ENSGT00510000047802 #34	ENSGT01030000234518.C.a.a	ENSGT00530000064158 #35	ENSGT00940000160969 #36
Beluga whale	MODERN SPECIES	62	YIPF2 (ENSDLEG00000021720)	CARM1 (ENSDLEG00000021724)	ENSDLEG00000021729	TMED1 (ENSDLEG00000021734) #7	DNM2 (ENSDLEG00000021738) #8	QTRT1 (ENSDLEG00000007761) #9	ILF3 (ENSDLEG00000007764) #11	SLC44A2 (ENSDLEG00000007781) #13	AP1M2 (ENSDLEG00000007808) #14	CDKN2D (ENSDLEG00000007864) #15	KRI1 (ENSDLEG00000007870) #16	ATG4D (ENSDLEG00000007877) #17	S1PR5 (ENSDLEG00000007878) #18	KEAP1 (ENSDLEG00000007880) #19	PDE4A (ENSDLEG00000007886) #21	CDC37 (ENSDLEG00000007897) #22	TYK2 (ENSDLEG00000007981) #23	ICAM3 (ENSDLEG00000008009)	RAVER1 (ENSDLEG00000008069) #24	FDX2 (ENSDLEG00000008119) #25	ZGLP1 (ENSDLEG00000008184) #26	ICAM5 (ENSDLEG00000008273) #27	ICAM4 (ENSDLEG00000008412) #28	ICAM1 (ENSDLEG00000008458) #29	MRPL4 (ENSDLEG00000008517) #30	S1PR2 (ENSDLEG00000008556) #31	DNMT1 (ENSDLEG00000008585) #33	ENSDLEG00000008705	EIF3G (ENSDLEG00000008729) #34	P2RY11 (ENSDLEG00000008792)	PPAN (ENSDLEG00000008825) #35
Narwhal	MODERN SPECIES	298	YIPF2 (ENSMMNG00015001562)	CARM1 (ENSMMNG00015001462)	C19orf38 (ENSMMNG00015001399)	TMED1 (ENSMMNG00015001368) #7	DNM2 (ENSMMNG00015001292) #8	QTRT1 (ENSMMNG00015001130) #9	ILF3 (ENSMMNG00015001074) #11	SLC44A2 (ENSMMNG00015000973) #13	AP1M2 (ENSMMNG00015000863) #14	CDKN2D (ENSMMNG00015000838) #15	KRI1 (ENSMMNG00015000795) #16	ATG4D (ENSMMNG00015000763) #17	S1PR5 (ENSMMNG00015000744) #18	KEAP1 (ENSMMNG00015000719) #19	PDE4A (ENSMMNG00015000552) #21	CDC37 (ENSMMNG00015000345) #22	TYK2 (ENSMMNG00015000290) #23	ICAM3 (ENSMMNG00015000259)	RAVER1 (ENSMMNG00015000152) #24	FDX2 (ENSMMNG00015000085) #25	ENSMMNG00015000055 #26	ICAM5 (ENSMMNG00015021254) #27	ICAM4 (ENSMMNG00015021245) #28	ICAM1 (ENSMMNG00015021230) #29	MRPL4 (ENSMMNG00015021211) #30	S1PR2 (ENSMMNG00015021200) #31	DNMT1 (ENSMMNG00015021181) #33	ENSMMNG00015021161	ENSMMNG00015021153	EIF3G (ENSMMNG00015021125) #34	P2RY11 (ENSMMNG00015021114)
Sperm whale	MODERN SPECIES	1200																CDC37 (ENSPCTG00005022194) #22	TYK2 (ENSPCTG00005022202) #23
Blue whale	MODERN SPECIES	14	YIPF2 (ENSBMSG00010010869)	CARM1 (ENSBMSG00010010948)	C19orf38 (ENSBMSG00010011004)	TMED1 (ENSBMSG00010011020) #7	DNM2 (ENSBMSG00010011050) #8	QTRT1 (ENSBMSG00010011150) #9	ILF3 (ENSBMSG00010011185) #11	SLC44A2 (ENSBMSG00010011271) #13	AP1M2 (ENSBMSG00010011325) #14	CDKN2D (ENSBMSG00010011355) #15	KRI1 (ENSBMSG00010011370) #16	ATG4D (ENSBMSG00010011422) #17	S1PR5 (ENSBMSG00010011450) #18	KEAP1 (ENSBMSG00010011463) #19	PDE4A (ENSBMSG00010011522) #21	CDC37 (ENSBMSG00010011605) #22	TYK2 (ENSBMSG00010011619) #23	ENSBMSG00010011643 #29	RAVER1 (ENSBMSG00010011661) #24	FDX2 (ENSBMSG00010011705) #25	ENSBMSG00010011722 #26	ICAM5 (ENSBMSG00010011788) #27	ICAM4 (ENSBMSG00010011803) #28	ICAM1 (ENSBMSG00010011829) #29	MRPL4 (ENSBMSG00010011859) #30	S1PR2 (ENSBMSG00010011881) #31	DNMT1 (ENSBMSG00010011892) #33	EIF3G (ENSBMSG00010011917) #34	P2RY11 (ENSBMSG00010011933)	PPAN (ENSBMSG00010011939) #35	ANGPTL6 (ENSBMSG00010011973) #36
Pecora	ANCESTRAL SPECIES		ENSGT00390000010157.b	ENSGT00940000160377	ENSGT00390000008862	ENSGT00940000158445 #7	ENSGT00940000155764.C #8	ENSGT00530000063679.B #9	ENSGT00940000156719 #11	ENSGT00940000158178 #13	ENSGT00940000159089 #14	ENSGT00940000159801.B #15	ENSGT00390000005605 #16	ENSGT00530000063000.a.a.b #17	ENSGT01050000244887.A.a.a.a #18	ENSGT00940000159543 #19	ENSGT00940000159788.b #21	ENSGT00390000013443.c #22	ENSGT00940000159869 #23	ENSGT00940000159005	ENSGT00940000160550 #24	ENSGT00940000161143 #25	ENSGT00470000042444 #26	ENSGT00940000162184 #27	ENSGT00940000162431 #28	ENSGT00940000162311.c.a #29	ENSGT00390000014512 #30	ENSGT01050000244887.A.a.a.b #31	ENSGT00390000005100 #33	ENSGT00510000047802 #34	ENSGT01030000234518.C.a.a	ENSGT00530000064158 #35	ENSGT00940000160969 #36
Yarkand deer	MODERN SPECIES	32	ENSCHYG00000002972	YIPF2 (ENSCHYG00000002943)	CARM1 (ENSCHYG00000002834)	C19orf38 (ENSCHYG00000002801)	TMED1 (ENSCHYG00000002770) #7	DNM2 (ENSCHYG00000002577) #8	ILF3 (ENSCHYG00000002410) #11	SLC44A2 (ENSCHYG00000002236) #13	AP1M2 (ENSCHYG00000002197) #14	CDKN2D (ENSCHYG00000002191) #15	KRI1 (ENSCHYG00000002126) #16	ATG4D (ENSCHYG00000002100) #17	S1PR5 (ENSCHYG00000002028) #18	KEAP1 (ENSCHYG00000002009) #19	PDE4A (ENSCHYG00000001936) #21	ENSCHYG00000001887 #22	TYK2 (ENSCHYG00000001767) #23	ICAM3 (ENSCHYG00000001683)	RAVER1 (ENSCHYG00000001635) #24	FDX2 (ENSCHYG00000001580) #25	ZGLP1 (ENSCHYG00000001560) #26	ICAM5 (ENSCHYG00000001528) #27	ICAM4 (ENSCHYG00000001512) #28	ENSCHYG00000001506 #29	MRPL4 (ENSCHYG00000001481) #30	S1PR2 (ENSCHYG00000001459) #31	DNMT1 (ENSCHYG00000001426) #33	EIF3G (ENSCHYG00000001385) #34	PPAN (ENSCHYG00000001330) #35	ANGPTL6 (ENSCHYG00000001299) #36	SHFL (ENSCHYG00000001268) #37
Percora_a	ANCESTRAL SPECIES		ENSGT00940000160377	ENSGT00390000008862	ENSGT00940000158445 #7	ENSGT00940000155764.C #8	ENSGT00530000063679.B #9	ENSGT00940000156719 #11	ENSGT00940000158178 #13	ENSGT00940000159089 #14	ENSGT00940000159801.B #15	ENSGT00390000005605 #16	ENSGT00530000063000.a.a.b #17	ENSGT00390000003710.d.c.b.b	ENSGT01050000244887.A.a.a.a #18	ENSGT00940000159543 #19	ENSGT00940000159788.b #21	ENSGT00390000013443.c #22	ENSGT00940000159869 #23	ENSGT00940000159005	ENSGT00940000160550 #24	ENSGT00940000161143 #25	ENSGT00470000042444 #26	ENSGT00940000162184 #27	ENSGT00940000162431 #28	ENSGT00940000162311.c.a #29	ENSGT00940000162311.c.b #29	ENSGT00390000014512 #30	ENSGT01050000244887.A.a.a.b #31	ENSGT00390000005100 #33	ENSGT00510000047802 #34	ENSGT01030000234518.C.a.a	ENSGT00530000064158 #35
Siberian musk deer	MODERN SPECIES	1187						ENSMMSG00000015502	ENSMMSG00000015463	ENSMMSG00000015425 #14	CDKN2D (ENSMMSG00000015413) #15	KRI1 (ENSMMSG00000015359) #16	ATG4D (ENSMMSG00000015299) #17	ENSMMSG00000015283	S1PR5 (ENSMMSG00000015275) #18	KEAP1 (ENSMMSG00000015254) #19	PDE4A (ENSMMSG00000015222) #21	CDC37 (ENSMMSG00000015195) #22
Bovidae	ANCESTRAL SPECIES		ENSGT00940000160377	ENSGT00390000008862	ENSGT00940000158445 #7	ENSGT00940000155764.C #8	ENSGT00530000063679.B #9	ENSGT00940000156719 #11	ENSGT00940000158178 #13	ENSGT00940000159089 #14	ENSGT00940000159801.B #15	ENSGT00390000005605 #16	ENSGT00530000063000.a.a.b #17	ENSGT00390000003710.d.c.b.b	ENSGT01050000244887.A.a.a.a #18	ENSGT00940000159543 #19	ENSGT00940000159788.b #21	ENSGT00390000013443.c #22	ENSGT00940000159869 #23	ENSGT00940000159005	ENSGT00940000160550 #24	ENSGT00940000161143 #25	ENSGT00470000042444 #26	ENSGT00940000162184 #27	ENSGT00940000162431 #28	ENSGT00940000162311.c.a #29	ENSGT00940000162311.c.b #29	ENSGT00390000014512 #30	ENSGT01050000244887.A.a.a.b #31	ENSGT00390000005100 #33	ENSGT00510000047802 #34	ENSGT01030000234518.C.a.a	ENSGT00530000064158 #35
Caprinae	ANCESTRAL SPECIES	3	ENSGT00390000010157.b	ENSGT00940000160377	ENSGT00390000008862	ENSGT00940000158445 #7	ENSGT00940000155764.C #8	ENSGT00530000063679.B #9	ENSGT00940000156719 #11	ENSGT00940000158178 #13	ENSGT00940000159089 #14	ENSGT00940000159801.B #15	ENSGT00390000005605 #16	ENSGT00530000063000.a.a.b #17	ENSGT01050000244887.A.a.a.a #18	ENSGT00940000159543 #19	ENSGT00940000159788.b #21	ENSGT00390000013443.c #22	ENSGT00940000159869 #23	ENSGT00940000159005	ENSGT00940000160550 #24	ENSGT00940000161143 #25	ENSGT00470000042444 #26	ENSGT00940000162184 #27	ENSGT00940000162431 #28	ENSGT00940000162311.c.a #29	ENSGT00390000014512 #30	ENSGT01050000244887.A.a.a.b #31	ENSGT00390000005100 #33	ENSGT00510000047802 #34	ENSGT01030000234518.C.a.a	ENSGT00530000064158 #35	ENSGT00940000160969 #36
Rambouillet Sheep	MODERN SPECIES	21	YIPF2 (ENSOARG00020007419)	CARM1 (ENSOARG00020007076)	C19orf38 (ENSOARG00020006962)	TMED1 (ENSOARG00020006915) #7	DNM2 (ENSOARG00020006664) #8	QTRT1 (ENSOARG00020006553) #9	ILF3 (ENSOARG00020005811) #11	ENSOARG00020005505 #13	AP1M2 (ENSOARG00020005364) #14	CDKN2D (ENSOARG00020005338) #15	KRI1 (ENSOARG00020005100) #16	ATG4D (ENSOARG00020005015) #17	S1PR5 (ENSOARG00020004996) #18	KEAP1 (ENSOARG00020004964) #19	PDE4A (ENSOARG00020004490) #21	CDC37 (ENSOARG00020004409) #22	TYK2 (ENSOARG00020004293) #23	ICAM3 (ENSOARG00020004268)	RAVER1 (ENSOARG00020004220) #24	FDX2 (ENSOARG00020004158) #25	ENSOARG00020004133 #26	ICAM5 (ENSOARG00020004084) #27	ICAM4 (ENSOARG00020004056) #28	ICAM1 (ENSOARG00020003991) #29	MRPL4 (ENSOARG00020003926) #30	S1PR2 (ENSOARG00020003905) #31	DNMT1 (ENSOARG00020003738) #33	EIF3G (ENSOARG00020003676) #34	ENSOARG00020003602 #36	ENSOARG00020003548 #37	ENSOARG00020003533
Goat	MODERN SPECIES	26	C19orf38 (ENSCHIG00000016641)	TMED1 (ENSCHIG00000026595) #7	DNM2 (ENSCHIG00000025917) #8	QTRT1 (ENSCHIG00000014137) #9	ILF3 (ENSCHIG00000024731) #11	SLC44A2 (ENSCHIG00000005817) #13	ENSCHIG00000008328	AP1M2 (ENSCHIG00000013386) #14	CDKN2D (ENSCHIG00000019940) #15	KRI1 (ENSCHIG00000011851) #16	ATG4D (ENSCHIG00000017777) #17	ENSCHIG00000018242	S1PR5 (ENSCHIG00000013199) #18	KEAP1 (ENSCHIG00000012093) #19	PDE4A (ENSCHIG00000020219) #21	CDC37 (ENSCHIG00000000718) #22	ENSCHIG00000000917	TYK2 (ENSCHIG00000018652) #23	ICAM3 (ENSCHIG00000008833)	RAVER1 (ENSCHIG00000006718) #24	FDX2 (ENSCHIG00000026261) #25	ZGLP1 (ENSCHIG00000017287) #26	ICAM5 (ENSCHIG00000024600) #27	ICAM4 (ENSCHIG00000006891) #28	ICAM1 (ENSCHIG00000015941) #29	MRPL4 (ENSCHIG00000000516) #30	S1PR2 (ENSCHIG00000010178) #31	DNMT1 (ENSCHIG00000023294) #33	EIF3G (ENSCHIG00000003167) #34	P2RY11 (ENSCHIG00000016299)	PPAN (ENSCHIG00000006450) #35
Bovinae	ANCESTRAL SPECIES	2	ENSGT00940000160377	ENSGT00390000008862	ENSGT00940000158445 #7	ENSGT00940000155764.C #8	ENSGT00530000063679.B #9	ENSGT00940000156719 #11	ENSGT00940000158178 #13	ENSGT00940000159089 #14	ENSGT00940000159801.B #15	ENSGT00390000005605 #16	ENSGT00530000063000.a.a.b #17	ENSGT00390000003710.d.c.b.b	ENSGT01050000244887.A.a.a.a #18	ENSGT00940000159543 #19	ENSGT00940000159788.b #21	ENSGT00390000013443.c #22	ENSGT00940000159869 #23	ENSGT00940000159005	ENSGT00940000160550 #24	ENSGT00940000161143 #25	ENSGT00470000042444 #26	ENSGT00940000162184 #27	ENSGT00940000162431 #28	ENSGT00940000162311.c.a #29	ENSGT00940000162311.c.b #29	ENSGT00390000014512 #30	ENSGT01050000244887.A.a.a.b #31	ENSGT00390000005100 #33	ENSGT00510000047802 #34	ENSGT01030000234518.C.a.a	ENSGT00530000064158 #35
American bison	MODERN SPECIES	3349	CARM1 (ENSBBBG00000016525)	C19orf38 (ENSBBBG00000004061)	TMED1 (ENSBBBG00000004053) #7	DNM2 (ENSBBBG00000016364) #8	QTRT1 (ENSBBBG00000016137) #9	ILF3 (ENSBBBG00000016084) #11	SLC44A2 (ENSBBBG00000015812) #13	AP1M2 (ENSBBBG00000015730) #14	CDKN2D (ENSBBBG00000015703) #15	KRI1 (ENSBBBG00000015696) #16	ATG4D (ENSBBBG00000015641) #17	ENSBBBG00000003902	S1PR5 (ENSBBBG00000003420) #18	KEAP1 (ENSBBBG00000003432) #19	PDE4A (ENSBBBG00000003458) #21	CDC37 (ENSBBBG00000003882) #22	TYK2 (ENSBBBG00000003878) #23	ICAM3 (ENSBBBG00000015517)	RAVER1 (ENSBBBG00000015499) #24	FDX2 (ENSBBBG00000015465) #25	ENSBBBG00000015460 #26	ICAM5 (ENSBBBG00000003849) #27	ICAM4 (ENSBBBG00000003843) #28	ICAM1 (ENSBBBG00000015412) #29	MRPL4 (ENSBBBG00000015394) #30	S1PR2 (ENSBBBG00000015343) #31	DNMT1 (ENSBBBG00000003484) #33	EIF3G (ENSBBBG00000001326) #34	P2RY11 (ENSBBBG00000001353)	PPAN (ENSBBBG00000001358) #35	ANGPTL6 (ENSBBBG00000001396) #36
Bos	ANCESTRAL SPECIES	3	ENSGT00940000160377	ENSGT00390000008862	ENSGT00940000158445 #7	ENSGT00940000155764.C #8	ENSGT00530000063679.B #9	ENSGT00940000156719 #11	ENSGT00940000158178 #13	ENSGT00940000159089 #14	ENSGT00940000159801.B #15	ENSGT00390000005605 #16	ENSGT00530000063000.a.a.b #17	ENSGT00390000003710.d.c.b.b	ENSGT01050000244887.A.a.a.a #18	ENSGT00940000159543 #19	ENSGT00940000159788.b #21	ENSGT00390000013443.c #22	ENSGT00940000159869 #23	ENSGT00940000159005	ENSGT00940000160550 #24	ENSGT00940000161143 #25	ENSGT00470000042444 #26	ENSGT00940000162184 #27	ENSGT00940000162431 #28	ENSGT00940000162311.c.a #29	ENSGT00940000162311.c.b #29	ENSGT00390000014512 #30	ENSGT01050000244887.A.a.a.b #31	ENSGT00390000005100 #33	ENSGT00510000047802.p #34	ENSGT01030000234518.C.a.a	ENSGT00530000064158 #35
Bos_b	ANCESTRAL SPECIES	2	ENSGT00940000160377	ENSGT00390000008862	ENSGT00940000158445 #7	ENSGT00940000155764.C #8	ENSGT00530000063679.B #9	ENSGT00940000156719 #11	ENSGT00940000158178 #13	ENSGT00940000159089 #14	ENSGT00940000159801.B #15	ENSGT00390000005605 #16	ENSGT00530000063000.a.a.b #17	ENSGT00390000003710.d.c.b.b	ENSGT01050000244887.A.a.a.a #18	ENSGT00940000159543 #19	ENSGT00940000159788.b #21	ENSGT00390000013443.c #22	ENSGT00940000159869 #23	ENSGT00940000159005	ENSGT00940000160550 #24	ENSGT00940000161143 #25	ENSGT00470000042444 #26	ENSGT00940000162184 #27	ENSGT00940000162431 #28	ENSGT00940000162311.c.a #29	ENSGT00940000162311.c.b #29	ENSGT00940000162311.d #29	ENSGT00950000185283	ENSGT00390000014512 #30	ENSGT01050000244887.A.a.a.b #31	ENSGT00390000005100 #33	ENSGT00510000047802.p #34
Hybrid Bos Indicus	MODERN SPECIES	26	CARM1 (ENSBIXG00005004797)	C19orf38 (ENSBIXG00005006957)	TMED1 (ENSBIXG00005027829) #7	DNM2 (ENSBIXG00005027715) #8	QTRT1 (ENSBIXG00005027486) #9	ILF3 (ENSBIXG00005027423) #11	SLC44A2 (ENSBIXG00005027228) #13	AP1M2 (ENSBIXG00005027157) #14	CDKN2D (ENSBIXG00005027099) #15	KRI1 (ENSBIXG00005027063) #16	ATG4D (ENSBIXG00005004641) #17	ENSBIXG00005027013	S1PR5 (ENSBIXG00005026991) #18	KEAP1 (ENSBIXG00005026956) #19	PDE4A (ENSBIXG00005026880) #21	CDC37 (ENSBIXG00005026794) #22	TYK2 (ENSBIXG00005004567) #23	ICAM3 (ENSBIXG00005026686)	RAVER1 (ENSBIXG00005026635) #24	FDX2 (ENSBIXG00005026494) #25	ZGLP1 (ENSBIXG00005007249) #26	ICAM5 (ENSBIXG00005026475) #27	ICAM4 (ENSBIXG00005026456) #28	ENSBIXG00005026437 #29	ENSBIXG00005026424 #29	MRPL4 (ENSBIXG00005026363) #30	S1PR2 (ENSBIXG00005002546) #31	DNMT1 (ENSBIXG00005026225) #33	EIF3G (ENSBIXG00005026069) #34	P2RY11 (ENSBIXG00005007635)	PPAN (ENSBIXG00005026042) #35
Cow	MODERN SPECIES	26	C7H19orf38 (ENSBTAG00000004224)	TMED1 (ENSBTAG00000010968) #7	DNM2 (ENSBTAG00000013362) #8	QTRT1 (ENSBTAG00000037941) #9	ENSBTAG00000051140	ILF3 (ENSBTAG00000040076) #11	SLC44A2 (ENSBTAG00000002628) #13	AP1M2 (ENSBTAG00000021160) #14	CDKN2D (ENSBTAG00000010731) #15	KRI1 (ENSBTAG00000010729) #16	ATG4D (ENSBTAG00000010727) #17	ENSBTAG00000051490	S1PR5 (ENSBTAG00000003544) #18	KEAP1 (ENSBTAG00000003543) #19	PDE4A (ENSBTAG00000012032) #21	CDC37 (ENSBTAG00000011699) #22	TYK2 (ENSBTAG00000011698) #23	ICAM3 (ENSBTAG00000015742)	RAVER1 (ENSBTAG00000015721) #24	FDX2 (ENSBTAG00000010318) #25	ZGLP1 (ENSBTAG00000038976) #26	ICAM5 (ENSBTAG00000010316) #27	ICAM4 (ENSBTAG00000010314) #28	ICAM1 (ENSBTAG00000010303) #29	ENSBTAG00000049560 #29	ENSBTAG00000053933 #29	MRPL4 (ENSBTAG00000001419)	S1PR2 (ENSBTAG00000002738) #31	DNMT1 (ENSBTAG00000002736) #33	EIF3G (ENSBTAG00000002734) #34	P2RY11 (ENSBTAG00000013536)
Bos_a	ANCESTRAL SPECIES	2	ENSGT00940000160377	ENSGT00390000008862	ENSGT00940000158445 #7	ENSGT00940000155764.C #8	ENSGT00530000063679.B #9	ENSGT00940000156719 #11	ENSGT00940000158178 #13	ENSGT00940000159089 #14	ENSGT00940000159801.B #15	ENSGT00390000005605 #16	ENSGT00530000063000.a.a.b #17	ENSGT00390000003710.d.c.b.b	ENSGT01050000244887.A.a.a.a #18	ENSGT00940000159543 #19	ENSGT00940000159788.b #21	ENSGT00390000013443.c #22	ENSGT00940000159869 #23	ENSGT00940000159005	ENSGT00940000160550 #24	ENSGT00940000161143 #25	ENSGT00470000042444 #26	ENSGT00940000162184 #27	ENSGT00940000162431 #28	ENSGT00940000162311.c.a #29	ENSGT00390000014512 #30	ENSGT01050000244887.A.a.a.b #31	ENSGT00390000005100 #33	ENSGT00510000047802.p #34	ENSGT01030000234518.C.a.a	ENSGT00530000064158 #35	ENSGT00940000160969 #36
Wild yak	MODERN SPECIES	1480														KEAP1 (ENSBMUG00000013793) #19	PDE4A (ENSBMUG00000013761) #21	CDC37 (ENSBMUG00000013685) #22	TYK2 (ENSBMUG00000013646) #23	ICAM3 (ENSBMUG00000013594)	RAVER1 (ENSBMUG00000013551) #24	FDX2 (ENSBMUG00000013520) #25	ENSBMUG00000013508 #26	ICAM5 (ENSBMUG00000013496) #27	ICAM4 (ENSBMUG00000013475) #28	ENSBMUG00000013452 #29
Domestic yak	MODERN SPECIES	27	CARM1 (ENSBGRG00000005309)	C19orf38 (ENSBGRG00000005246)	TMED1 (ENSBGRG00000005206) #7	DNM2 (ENSBGRG00000004270) #8	QTRT1 (ENSBGRG00000004106) #9	ILF3 (ENSBGRG00000003981) #11	SLC44A2 (ENSBGRG00000003649) #13	AP1M2 (ENSBGRG00000003553) #14	CDKN2D (ENSBGRG00000003538) #15	KRI1 (ENSBGRG00000003495) #16	ATG4D (ENSBGRG00000003396) #17	ENSBGRG00000003351	S1PR5 (ENSBGRG00000003343) #18	ENSBGRG00000003338 #19	PDE4A (ENSBGRG00000003241) #21	CDC37 (ENSBGRG00000003152) #22	TYK2 (ENSBGRG00000003025) #23	ICAM3 (ENSBGRG00000002967)	RAVER1 (ENSBGRG00000002843) #24	FDX2 (ENSBGRG00000002821) #25	ZGLP1 (ENSBGRG00000002807) #26	ICAM5 (ENSBGRG00000002740) #27	ICAM4 (ENSBGRG00000002716) #28	ENSBGRG00000002625 #29	MRPL4 (ENSBGRG00000002458) #30	S1PR2 (ENSBGRG00000002416) #31	DNMT1 (ENSBGRG00000002388) #33	EIF3G (ENSBGRG00000002308) #34	P2RY11 (ENSBGRG00000002275)	PPAN (ENSBGRG00000002190) #35	ANGPTL6 (ENSBGRG00000002157) #36
Laurasiatheria_b	ANCESTRAL SPECIES	18	ENSGT00390000008862	ENSGT00940000158445 #7	ENSGT00940000155764.C #8	ENSGT00530000063679.B #9	ENSGT00940000156719 #11	ENSGT01100000264612	ENSGT00940000158178 #13	ENSGT00900000143551	ENSGT00940000159089 #14	ENSGT00940000159801.B #15	ENSGT00390000005605 #16	ENSGT00530000063000.a.a.b #17	ENSGT01050000244887.A.a.a.a #18	ENSGT00940000159543 #19	ENSGT00940000159788.b #21	ENSGT00390000013443.c #22	ENSGT00940000159869 #23	ENSGT00940000159005	ENSGT00940000160550 #24	ENSGT00940000161143 #25	ENSGT00470000042444 #26	ENSGT00940000162184 #27	ENSGT00940000162431 #28	ENSGT00940000162311 #29	ENSGT00390000014512 #30	ENSGT01050000244887.A.a.a.b #31	ENSGT00390000005100 #33	ENSGT00510000047802 #34	ENSGT01030000234518.C.a.a	ENSGT00530000064158 #35	ENSGT00940000160969 #36
Carnivora	ANCESTRAL SPECIES	6	ENSGT00390000008862	ENSGT00940000158445 #7	ENSGT00940000155764.C #8	ENSGT00530000063679.B #9	ENSGT00940000156719 #11	ENSGT01100000264612	ENSGT00940000158178 #13	ENSGT00900000143551	ENSGT00940000159089 #14	ENSGT00940000159801.B #15	ENSGT00390000005605 #16	ENSGT00530000063000.a.a.b #17	ENSGT01050000244887.A.a.a.a #18	ENSGT00940000159543 #19	ENSGT00940000159788.b #21	ENSGT00390000013443.c #22	ENSGT00940000159869 #23	ENSGT00940000159005	ENSGT00940000160550 #24	ENSGT00940000161143 #25	ENSGT00470000042444 #26	ENSGT00940000162184 #27	ENSGT00940000162431 #28	ENSGT00940000162311 #29	ENSGT00390000014512 #30	ENSGT01050000244887.A.a.a.b #31	ENSGT00390000005100 #33	ENSGT00510000047802 #34	ENSGT01030000234518.C.a.a	ENSGT00530000064158 #35	ENSGT00940000160969 #36
Caniformia	ANCESTRAL SPECIES	4	ENSGT00940000160377	ENSGT00390000008862	ENSGT00940000158445 #7	ENSGT00940000155764.C #8	ENSGT00530000063679.B #9	ENSGT00940000156719 #11	ENSGT01100000264612	ENSGT00940000158178 #13	ENSGT00940000159089 #14	ENSGT00940000159801.B #15	ENSGT00390000005605 #16	ENSGT00530000063000.a.a.b #17	ENSGT01050000244887.A.a.a.a #18	ENSGT00940000159543 #19	ENSGT00940000159788.b #21	ENSGT00390000013443.c #22	ENSGT00940000159869 #23	ENSGT00940000159005	ENSGT00940000160550 #24	ENSGT00940000161143 #25	ENSGT00470000042444 #26	ENSGT00940000162184 #27	ENSGT00940000162431 #28	ENSGT00940000162311 #29	ENSGT00390000014512 #30	ENSGT01050000244887.A.a.a.b #31	ENSGT00390000005100 #33	ENSGT00510000047802 #34	ENSGT01030000234518.C.a.a	ENSGT00530000064158 #35	ENSGT00940000160969 #36
Caniformia_b	ANCESTRAL SPECIES	23	ENSGT00940000160377	ENSGT00390000008862	ENSGT00940000158445 #7	ENSGT00940000155764.C #8	ENSGT00530000063679.B #9	ENSGT00940000156719 #11	ENSGT01100000264612	ENSGT00940000158178 #13	ENSGT00940000159089 #14	ENSGT00940000159801.B #15	ENSGT00390000005605 #16	ENSGT00530000063000.a.a.b #17	ENSGT01050000244887.A.a.a.a #18	ENSGT00940000159543 #19	ENSGT00940000159788.b #21	ENSGT00390000013443.c #22	ENSGT00940000159869 #23	ENSGT00940000159005	ENSGT00940000160550 #24	ENSGT00940000161143 #25	ENSGT00470000042444 #26	ENSGT00940000162184 #27	ENSGT00940000162431 #28	ENSGT00940000162311 #29	ENSGT00390000014512 #30	ENSGT01050000244887.A.a.a.b #31	ENSGT00390000005100 #33	ENSGT00510000047802 #34	ENSGT01030000234518.C.a.a	ENSGT00530000064158 #35	ENSGT00940000160969 #36
Ursidae	ANCESTRAL SPECIES	20	ENSGT00940000160377	ENSGT00390000008862	ENSGT00940000158445 #7	ENSGT00940000155764.C #8	ENSGT00530000063679.B #9	ENSGT00940000156719 #11	ENSGT01100000264612	ENSGT00940000158178 #13	ENSGT00940000159089 #14	ENSGT00940000159801.B #15	ENSGT00390000005605 #16	ENSGT00530000063000.a.a.b #17	ENSGT01050000244887.A.a.a.a #18	ENSGT00940000159543 #19	ENSGT00940000159788.b #21	ENSGT00390000013443.c #22	ENSGT00940000159869 #23	ENSGT00940000159005	ENSGT00940000160550 #24	ENSGT00940000161143 #25	ENSGT00470000042444 #26	ENSGT00940000162184 #27	ENSGT00940000162431 #28	ENSGT00940000162311 #29	ENSGT00390000014512 #30	ENSGT01050000244887.A.a.a.b #31	ENSGT00390000005100 #33	ENSGT00510000047802.n #34	ENSGT01030000234518.C.a.a	ENSGT00530000064158 #35	ENSGT00940000160969 #36
Ursus	ANCESTRAL SPECIES	93	ENSGT00940000160377	ENSGT00390000008862	ENSGT00940000158445 #7	ENSGT00940000155764.C #8	ENSGT00530000063679.B #9	ENSGT00940000156719 #11	ENSGT01100000264612	ENSGT00940000158178 #13	ENSGT00940000159089 #14	ENSGT00940000159801.B #15	ENSGT00390000005605 #16	ENSGT00530000063000.a.a.b #17	ENSGT01050000244887.A.a.a.a #18	ENSGT00940000159543 #19	ENSGT00940000159788.b #21	ENSGT00390000013443.c #22	ENSGT00940000159869 #23	ENSGT00940000159005	ENSGT00940000160550 #24	ENSGT00940000161143 #25	ENSGT00470000042444 #26	ENSGT00940000162184 #27	ENSGT00940000162431 #28	ENSGT00940000162311 #29	ENSGT00390000014512 #30	ENSGT01050000244887.A.a.a.b #31	ENSGT00390000005100 #33	ENSGT00510000047802.n #34	ENSGT01030000234518.C.a.a	ENSGT00530000064158 #35	ENSGT00940000160969 #36
American black bear	MODERN SPECIES	486						ILF3 (ENSUAMG00000017664) #11	ENSUAMG00000018404	SLC44A2 (ENSUAMG00000018423) #13	AP1M2 (ENSUAMG00000018610) #14	CDKN2D (ENSUAMG00000018611) #15	KRI1 (ENSUAMG00000018612) #16	ATG4D (ENSUAMG00000018615) #17	S1PR5 (ENSUAMG00000018618) #18	KEAP1 (ENSUAMG00000018620) #19	PDE4A (ENSUAMG00000018637) #21	CDC37 (ENSUAMG00000018652) #22	TYK2 (ENSUAMG00000018663) #23	ICAM3 (ENSUAMG00000020384)	RAVER1 (ENSUAMG00000020385) #24	FDX2 (ENSUAMG00000020386) #25	ZGLP1 (ENSUAMG00000020388) #26	ICAM5 (ENSUAMG00000020389) #27	ICAM4 (ENSUAMG00000020390) #28	ENSUAMG00000020391 #29	MRPL4 (ENSUAMG00000020392) #30	S1PR2 (ENSUAMG00000020393) #31
Polar bear	MODERN SPECIES	312	SMARCA4 (ENSUMAG00000022005)	YIPF2 (ENSUMAG00000024977)	CARM1 (ENSUMAG00000024981)	C19orf38 (ENSUMAG00000024984)	TMED1 (ENSUMAG00000024986) #7	DNM2 (ENSUMAG00000025035) #8	QTRT1 (ENSUMAG00000025046) #9	ILF3 (ENSUMAG00000025049) #11	SLC44A2 (ENSUMAG00000025056) #13	AP1M2 (ENSUMAG00000025087) #14	CDKN2D (ENSUMAG00000025088) #15	KRI1 (ENSUMAG00000025089) #16	ATG4D (ENSUMAG00000025090) #17	KEAP1 (ENSUMAG00000025092) #19	PDE4A (ENSUMAG00000025093) #21	CDC37 (ENSUMAG00000025094) #22	TYK2 (ENSUMAG00000025095) #23	ICAM3 (ENSUMAG00000025097)	RAVER1 (ENSUMAG00000025098) #24	FDX2 (ENSUMAG00000025100) #25	ZGLP1 (ENSUMAG00000025101) #26	ICAM5 (ENSUMAG00000025102) #27	ENSUMAG00000025103 #29	ENSUMAG00000025104 #29	MRPL4 (ENSUMAG00000025105) #30	ENSUMAG00000025106 #31	DNMT1 (ENSUMAG00000025107) #33	EIF3G (ENSUMAG00000025108) #34	P2RY11 (ENSUMAG00000025109)	ENSUMAG00000025112 #36	ENSUMAG00000025113 #37
Giant Panda	MODERN SPECIES	14	YIPF2 (ENSAMEG00000011001)	CARM1 (ENSAMEG00000011015)	C19orf38 (ENSAMEG00000011044)	TMED1 (ENSAMEG00000011047) #7	DNM2 (ENSAMEG00000011055) #8	QTRT1 (ENSAMEG00000011134) #9	ILF3 (ENSAMEG00000011152) #11	SLC44A2 (ENSAMEG00000011218) #13	AP1M2 (ENSAMEG00000011318) #14	CDKN2D (ENSAMEG00000011370) #15	KRI1 (ENSAMEG00000011373) #16	ATG4D (ENSAMEG00000011409) #17	S1PR5 (ENSAMEG00000030671) #18	KEAP1 (ENSAMEG00000011445) #19	PDE4A (ENSAMEG00000011455) #21	CDC37 (ENSAMEG00000011542) #22	TYK2 (ENSAMEG00000011557) #23	ICAM3 (ENSAMEG00000011709)	RAVER1 (ENSAMEG00000011738) #24	FDX2 (ENSAMEG00000011765) #25	ZGLP1 (ENSAMEG00000011774) #26	ENSAMEG00000026236	ICAM5 (ENSAMEG00000011775) #27	ICAM4 (ENSAMEG00000011803) #28	ICAM1 (ENSAMEG00000011805) #29	MRPL4 (ENSAMEG00000011808) #30	S1PR2 (ENSAMEG00000019659) #31	DNMT1 (ENSAMEG00000011823) #33	EIF3G (ENSAMEG00000011963) #34	P2RY11 (ENSAMEG00000019674)	ANGPTL6 (ENSAMEG00000012016) #36
Mustelinae	ANCESTRAL SPECIES	45	ENSGT00940000160377	ENSGT00390000008862	ENSGT00940000158445 #7	ENSGT00940000155764.C #8	ENSGT00530000063679.B #9	ENSGT00940000156719 #11	ENSGT01100000264612	ENSGT00940000158178 #13	ENSGT00940000159089 #14	ENSGT00940000159801.B #15	ENSGT00390000005605 #16	ENSGT00530000063000.a.a.b #17	ENSGT01050000244887.A.a.a.a #18	ENSGT00940000159543 #19	ENSGT00940000159788.b #21	ENSGT00390000013443.c #22	ENSGT00940000159869 #23	ENSGT00940000159005	ENSGT00940000160550 #24	ENSGT00940000161143 #25	ENSGT00470000042444 #26	ENSGT00940000162184 #27	ENSGT00940000162431 #28	ENSGT00940000162311 #29	ENSGT00390000014512 #30	ENSGT01050000244887.A.a.a.b #31	ENSGT00390000005100 #33	ENSGT00510000047802 #34	ENSGT01030000234518.C.a.a	ENSGT00530000064158 #35	ENSGT00940000160969 #36
Ferret	MODERN SPECIES	185	YIPF2 (ENSMPUG00000005740)	CARM1 (ENSMPUG00000005752)	C19orf38 (ENSMPUG00000005817)	TMED1 (ENSMPUG00000005821) #7	ENSMPUG00000005856 #8	QTRT1 (ENSMPUG00000006190) #9	ILF3 (ENSMPUG00000006205) #11	SLC44A2 (ENSMPUG00000006218) #13	AP1M2 (ENSMPUG00000006512) #14	CDKN2D (ENSMPUG00000006525) #15	KRI1 (ENSMPUG00000006534) #16	ATG4D (ENSMPUG00000006554) #17	S1PR5 (ENSMPUG00000006658) #18	KEAP1 (ENSMPUG00000006665) #19	PDE4A (ENSMPUG00000006672) #21	CDC37 (ENSMPUG00000006683) #22	TYK2 (ENSMPUG00000006692) #23	RAVER1 (ENSMPUG00000006712) #24	FDX2 (ENSMPUG00000006723) #25	ENSMPUG00000006747	ICAM5 (ENSMPUG00000006752) #27	ICAM4 (ENSMPUG00000006813) #28	ICAM1 (ENSMPUG00000006820) #29	MRPL4 (ENSMPUG00000006825) #30	S1PR2 (ENSMPUG00000018709) #31	DNMT1 (ENSMPUG00000006829) #33	EIF3G (ENSMPUG00000006847) #34	P2RY11 (ENSMPUG00000018711)	PPAN (ENSMPUG00000006866) #35	ANGPTL6 (ENSMPUG00000006875) #36	SHFL (ENSMPUG00000006886) #37
American mink	MODERN SPECIES	233	YIPF2 (ENSNVIG00000000916)	CARM1 (ENSNVIG00000000875)	C19orf38 (ENSNVIG00000000851)	TMED1 (ENSNVIG00000000836) #7	DNM2 (ENSNVIG00000000504) #8	ILF3 (ENSNVIG00000000028) #11	ENSNVIG00000024114	SLC44A2 (ENSNVIG00000024109) #13	AP1M2 (ENSNVIG00000024101) #14	CDKN2D (ENSNVIG00000024098) #15	KRI1 (ENSNVIG00000024085) #16	ATG4D (ENSNVIG00000024084) #17	S1PR5 (ENSNVIG00000024083) #18	KEAP1 (ENSNVIG00000024081) #19	PDE4A (ENSNVIG00000024079) #21	CDC37 (ENSNVIG00000024077) #22	TYK2 (ENSNVIG00000023790) #23	ICAM3 (ENSNVIG00000023787)	RAVER1 (ENSNVIG00000023781) #24	ENSNVIG00000023780 #25	ENSNVIG00000023779 #26	ICAM5 (ENSNVIG00000023776) #27	ICAM4 (ENSNVIG00000023772) #28	ICAM1 (ENSNVIG00000023769) #29	MRPL4 (ENSNVIG00000023765) #30	S1PR2 (ENSNVIG00000023762) #31	DNMT1 (ENSNVIG00000023752) #33	EIF3G (ENSNVIG00000023747) #34	P2RY11 (ENSNVIG00000023744)	PPAN (ENSNVIG00000023734) #35	ANGPTL6 (ENSNVIG00000023730) #36
Canidae	ANCESTRAL SPECIES		ENSGT00390000010157.b	ENSGT00940000160377	ENSGT00390000008862	ENSGT00940000158445 #7	ENSGT00940000155764.C #8	ENSGT00530000063679.B #9	ENSGT00940000156719 #11	ENSGT00940000158178 #13	ENSGT00940000159089 #14	ENSGT00940000159801.B #15	ENSGT00390000005605 #16	ENSGT00530000063000.a.a.b #17	ENSGT01050000244887.A.a.a.a #18	ENSGT00940000159543 #19	ENSGT00940000159788.b #21	ENSGT00390000013443.c #22	ENSGT00940000159869 #23	ENSGT00940000159005	ENSGT00940000160550 #24	ENSGT00940000161143 #25	ENSGT00470000042444 #26	ENSGT00940000162184 #27	ENSGT00940000162431 #28	ENSGT00940000162311 #29	ENSGT00390000014512 #30	ENSGT01050000244887.A.a.a.b #31	ENSGT00390000005100 #33	ENSGT00510000047802 #34	ENSGT01030000234518.C.a.a	ENSGT00530000064158 #35	ENSGT00940000160969 #36
Canis_lupus	ANCESTRAL SPECIES	1	ENSGT00390000010157.b	ENSGT00940000160377	ENSGT00390000008862	ENSGT00940000158445 #7	ENSGT00940000155764.C #8	ENSGT00530000063679.B #9	ENSGT00940000156719 #11	ENSGT00940000158178 #13	ENSGT00940000159089 #14	ENSGT00940000159801.B #15	ENSGT00390000005605 #16	ENSGT00530000063000.a.a.b #17	ENSGT01050000244887.A.a.a.a #18	ENSGT00940000159543 #19	ENSGT00940000159788.b #21	ENSGT00390000013443.c #22	ENSGT00940000159869 #23	ENSGT00940000159005	ENSGT00940000160550 #24	ENSGT00940000161143 #25	ENSGT00470000042444 #26	ENSGT00940000162184 #27	ENSGT00940000162431 #28	ENSGT00940000162311 #29	ENSGT00390000014512 #30	ENSGT01050000244887.A.a.a.b #31	ENSGT00390000005100 #33	ENSGT00510000047802 #34	ENSGT01030000234518.C.a.a	ENSGT00530000064158 #35	ENSGT00940000160969 #36
Dingo	MODERN SPECIES	112	YIPF2 (ENSCAFG00020024521)	ENSCAFG00020024515	C19orf38 (ENSCAFG00020024508)	TMED1 (ENSCAFG00020024503) #7	DNM2 (ENSCAFG00020024497) #8	QTRT1 (ENSCAFG00020024495) #9	ILF3 (ENSCAFG00020024492) #11	SLC44A2 (ENSCAFG00020024490) #13	AP1M2 (ENSCAFG00020024487) #14	CDKN2D (ENSCAFG00020024485) #15	KRI1 (ENSCAFG00020024483) #16	ATG4D (ENSCAFG00020024480) #17	ENSCAFG00020024479 #18	KEAP1 (ENSCAFG00020024476) #19	PDE4A (ENSCAFG00020024472) #21	CDC37 (ENSCAFG00020024470) #22	TYK2 (ENSCAFG00020024459) #23	ICAM3 (ENSCAFG00020024455)	RAVER1 (ENSCAFG00020024449) #24	FDX2 (ENSCAFG00020024447) #25	ZGLP1 (ENSCAFG00020024441) #26	ICAM5 (ENSCAFG00020024426) #27	ICAM4 (ENSCAFG00020024419) #28	ICAM1 (ENSCAFG00020024415) #29	MRPL4 (ENSCAFG00020024405) #30	S1PR2 (ENSCAFG00020024403) #31	DNMT1 (ENSCAFG00020023719) #33	EIF3G (ENSCAFG00020023628) #34	P2RY11 (ENSCAFG00020023626)	PPAN (ENSCAFG00020023621) #35	ANGPTL6 (ENSCAFG00020023619) #36
Dog	MODERN SPECIES	12	YIPF2 (ENSCAFG00845022472)	TIMM29 (ENSCAFG00845022723)	ENSCAFG00845022768	C20H19orf38 (ENSCAFG00845022938)	TMED1 (ENSCAFG00845023014) #7	DNM2 (ENSCAFG00845023306) #8	ILF3 (ENSCAFG00845024192) #11	SLC44A2 (ENSCAFG00845024850) #13	AP1M2 (ENSCAFG00845026105) #14	CDKN2D (ENSCAFG00845026179) #15	KRI1 (ENSCAFG00845026221) #16	ATG4D (ENSCAFG00845026379) #17	KEAP1 (ENSCAFG00845026598) #19	S1PR5 (ENSCAFG00845026691) #18	PDE4A (ENSCAFG00845026907) #21	CDC37 (ENSCAFG00845027375) #22	TYK2 (ENSCAFG00845027438) #23	ICAM3 (ENSCAFG00845027621)	RAVER1 (ENSCAFG00845027658) #24	FDX2 (ENSCAFG00845027784) #25	ENSCAFG00845027817 #26	ICAM5 (ENSCAFG00845027874) #27	ICAM4 (ENSCAFG00845027954) #28	ICAM1 (ENSCAFG00845027986) #29	MRPL4 (ENSCAFG00845028082) #30	S1PR2 (ENSCAFG00845018161) #31	DNMT1 (ENSCAFG00845018246) #33	EIF3G (ENSCAFG00845018422) #34	P2RY11 (ENSCAFG00845018602)	PPAN (ENSCAFG00845018657) #35	ANGPTL6 (ENSCAFG00845018834) #36
Red fox	MODERN SPECIES	182	TIMM29 (ENSVVUG00000017817)	YIPF2 (ENSVVUG00000017813)	CARM1 (ENSVVUG00000017717)	TMED1 (ENSVVUG00000017707) #7	DNM2 (ENSVVUG00000017697) #8	QTRT1 (ENSVVUG00000017540) #9	ILF3 (ENSVVUG00000017504) #11	SLC44A2 (ENSVVUG00000017455) #13	ENSVVUG00000017448 #14	CDKN2D (ENSVVUG00000017432) #15	KRI1 (ENSVVUG00000017413) #16	ATG4D (ENSVVUG00000017356) #17	ENSVVUG00000017346 #18	KEAP1 (ENSVVUG00000017341) #19	PDE4A (ENSVVUG00000017287) #21	CDC37 (ENSVVUG00000017252) #22
Felidae	ANCESTRAL SPECIES	21	ENSGT00940000160377	ENSGT00390000008862	ENSGT00940000158445 #7	ENSGT00940000155764.C #8	ENSGT00530000063679.B #9	ENSGT00940000156719 #11	ENSGT00940000158178 #13	ENSGT00900000143551	ENSGT00940000159089 #14	ENSGT00940000159801.B #15	ENSGT00390000005605 #16	ENSGT00530000063000.a.a.b #17	ENSGT01050000244887.A.a.a.a #18	ENSGT00940000159543 #19	ENSGT00940000159788.b #21	ENSGT00390000013443.c #22	ENSGT00940000159869 #23	ENSGT00940000159005	ENSGT00940000160550 #24	ENSGT00940000161143 #25	ENSGT00470000042444 #26	ENSGT00940000162184 #27	ENSGT00940000162431 #28	ENSGT00940000162311 #29	ENSGT00390000014512 #30	ENSGT01050000244887.A.a.a.b #31	ENSGT00390000005100 #33	ENSGT00510000047802 #34	ENSGT01030000234518.C.a.a	ENSGT00530000064158 #35	ENSGT00940000160969 #36
Cat	DUPLICATION
Cat	MODERN SPECIES	1	YIPF2 (ENSFCAG00000027596)	CARM1 (ENSFCAG00000004893)	CA2H19orf38 (ENSFCAG00000018213)	TMED1 (ENSFCAG00000032603) #7	DNM2 (ENSFCAG00000004892) #8	QTRT1 (ENSFCAG00000026012) #9	ILF3 (ENSFCAG00000004887) #11	SLC44A2 (ENSFCAG00000004885) #13	AP1M2 (ENSFCAG00000004258) #14	CDKN2D (ENSFCAG00000022117) #15	KRI1 (ENSFCAG00000004884) #16	ATG4D (ENSFCAG00000004883) #17	S1PR5 (ENSFCAG00000031632) #18	KEAP1 (ENSFCAG00000012518) #19	PDE4A (ENSFCAG00000004881) #21	ENSFCAG00000009437 #22	TYK2 (ENSFCAG00000009436) #23	ICAM3 (ENSFCAG00000029803)	RAVER1 (ENSFCAG00000009435) #24	FDX2 (ENSFCAG00000009434) #25	ZGLP1 (ENSFCAG00000031808) #26	ICAM5 (ENSFCAG00000009433) #27	ICAM4 (ENSFCAG00000009432) #28	ICAM1 (ENSFCAG00000009431) #29	MRPL4 (ENSFCAG00000043071) #30	S1PR2 (ENSFCAG00000013003) #31	DNMT1 (ENSFCAG00000012246) #33	EIF3G (ENSFCAG00000009389) #34	P2RY11 (ENSFCAG00000030255)	PPAN (ENSFCAG00000009388) #35	ANGPTL6 (ENSFCAG00000009387) #36
Cat	MODERN SPECIES	240	CLDND1 (ENSFCAG00000015483)	ENSFCAG00000023977	OR5K3 (ENSFCAG00000029557)	OR5K4 (ENSFCAG00000022200)	ENSFCAG00000051484	ENSFCAG00000044157	ENSFCAG00000049952	ENSFCAG00000053673	ENSFCAG00000028347	OR5AC2 (ENSFCAG00000045057)	ENSFCAG00000031464	ENSFCAG00000043389	ENSFCAG00000039015	GABRR3 (ENSFCAG00000018255)	RIOX2 (ENSFCAG00000007324)	ENSFCAG00000038726 #22	ENSFCAG00000043827	CRYBG3 (ENSFCAG00000023098)	ARL6 (ENSFCAG00000023205)	EPHA6 (ENSFCAG00000023114)	ENSFCAG00000052988	NSUN3 (ENSFCAG00000005934)	STX19 (ENSFCAG00000027218)	ARL13B (ENSFCAG00000025839)	PROS1 (ENSFCAG00000039149)	EPHA3 (ENSFCAG00000024008)	CSNKA2IP (ENSFCAG00000051225)	ENSFCAG00000026057	CC2H3orf38 (ENSFCAG00000025538)	ZNF654 (ENSFCAG00000029279)	CGGBP1 (ENSFCAG00000022195)
Panthera	ANCESTRAL SPECIES	15	ENSGT00390000008862	ENSGT00940000158445 #7	ENSGT00940000155764.C #8	ENSGT00530000063679.B #9	ENSGT00940000156719 #11	ENSGT00940000158178 #13	ENSGT00900000143551	ENSGT00940000159089 #14	ENSGT00940000159801.B #15	ENSGT00390000005605 #16	ENSGT00530000063000.a.a.b #17	ENSGT01050000244887.A.a.a.a #18	ENSGT00940000159543 #19	ENSGT00940000159788.b #21	ENSGT00940000170960	ENSGT00390000013443.c #22	ENSGT00940000159869 #23	ENSGT00940000159005	ENSGT00940000160550 #24	ENSGT00940000161143 #25	ENSGT00470000042444 #26	ENSGT00940000162184 #27	ENSGT00940000162431 #28	ENSGT00940000162311 #29	ENSGT00390000014512 #30	ENSGT01050000244887.A.a.a.b #31	ENSGT00390000005100 #33	ENSGT00510000047802 #34	ENSGT01030000234518.C.a.a	ENSGT00530000064158 #35	ENSGT00940000160969 #36
Panthera_a	ANCESTRAL SPECIES		ENSGT00390000008862	ENSGT00940000158445 #7	ENSGT00940000155764.C #8	ENSGT00530000063679.B #9	ENSGT00940000156719 #11	ENSGT00900000143551	ENSGT00940000158178 #13	ENSGT00940000159089 #14	ENSGT00940000159801.B #15	ENSGT00390000005605 #16	ENSGT00530000063000.a.a.b #17	ENSGT01050000244887.A.a.a.a #18	ENSGT00940000159543 #19	ENSGT00940000159788.b #21	ENSGT00940000170960	ENSGT00390000013443.c #22	ENSGT00940000159869 #23	ENSGT00940000159005	ENSGT00940000160550 #24	ENSGT00940000161143 #25	ENSGT00470000042444 #26	ENSGT00940000162184 #27	ENSGT00940000162431 #28	ENSGT00940000162311 #29	ENSGT00390000014512 #30	ENSGT01050000244887.A.a.a.b #31	ENSGT00390000005100 #33	ENSGT00510000047802 #34	ENSGT01030000234518.C.a.a	ENSGT00530000064158 #35	ENSGT00940000160969 #36
lion	MODERN SPECIES	2	C19orf38 (ENSPLOG00000004284)	TMED1 (ENSPLOG00000004267) #7	DNM2 (ENSPLOG00000004141) #8	QTRT1 (ENSPLOG00000004032) #9	ENSPLOG00000004021	ILF3 (ENSPLOG00000003999) #11	ENSPLOG00000003962	SLC44A2 (ENSPLOG00000003904) #13	AP1M2 (ENSPLOG00000003836) #14	CDKN2D (ENSPLOG00000003822) #15	KRI1 (ENSPLOG00000003783) #16	ATG4D (ENSPLOG00000003751) #17	S1PR5 (ENSPLOG00000003732) #18	KEAP1 (ENSPLOG00000003715) #19	PDE4A (ENSPLOG00000003631) #21	CDC37 (ENSPLOG00000003550) #22	TYK2 (ENSPLOG00000003514) #23	ICAM3 (ENSPLOG00000003485)	RAVER1 (ENSPLOG00000003453) #24	FDX2 (ENSPLOG00000003426) #25	ENSPLOG00000003406 #26	ICAM5 (ENSPLOG00000003385) #27	ICAM4 (ENSPLOG00000003370) #28	ICAM1 (ENSPLOG00000003347) #29	MRPL4 (ENSPLOG00000003305) #30	S1PR2 (ENSPLOG00000003282) #31	DNMT1 (ENSPLOG00000003231) #33	EIF3G (ENSPLOG00000003189) #34	PPAN (ENSPLOG00000003131) #35	ANGPTL6 (ENSPLOG00000003100) #36	SHFL (ENSPLOG00000003064) #37
leopard	MODERN SPECIES	110	TMED1 (ENSPPRG00000005601) #7	DNM2 (ENSPPRG00000005225) #8	ENSPPRG00000000095 #8	QTRT1 (ENSPPRG00000022719) #9	ILF3 (ENSPPRG00000021486) #11	SLC44A2 (ENSPPRG00000006187) #13	ENSPPRG00000002741	AP1M2 (ENSPPRG00000002436) #14	CDKN2D (ENSPPRG00000001424) #15	KRI1 (ENSPPRG00000001072) #16	ATG4D (ENSPPRG00000000081) #17	ENSPPRG00000022644 #18	KEAP1 (ENSPPRG00000023110) #19	PDE4A (ENSPPRG00000023496) #21	ENSPPRG00000017450	CDC37 (ENSPPRG00000013068) #22	TYK2 (ENSPPRG00000012402) #23	ICAM3 (ENSPPRG00000011491)	RAVER1 (ENSPPRG00000009912) #24	FDX2 (ENSPPRG00000007655) #25	ZGLP1 (ENSPPRG00000007383) #26	ICAM5 (ENSPPRG00000006799) #27	ICAM4 (ENSPPRG00000005803) #28	ICAM1 (ENSPPRG00000005262) #29	MRPL4 (ENSPPRG00000004312) #30	S1PR2 (ENSPPRG00000017112) #31	DNMT1 (ENSPPRG00000003596) #33	EIF3G (ENSPPRG00000023494) #34	P2RY11 (ENSPPRG00000023599)	PPAN (ENSPPRG00000023895) #35	ANGPTL6 (ENSPPRG00000024345) #36
Laurasiatheria_c	ANCESTRAL SPECIES	16	ENSGT00940000160377	ENSGT00390000008862	ENSGT00940000158445 #7	ENSGT00940000155764.C #8	ENSGT00530000063679.B #9	ENSGT00940000156719 #11	ENSGT00900000143551	ENSGT00940000158178 #13	ENSGT00940000159089 #14	ENSGT00940000159801.B #15	ENSGT00390000005605 #16	ENSGT00530000063000.a.a.b #17	ENSGT01050000244887.A.a.a.a #18	ENSGT00940000159543 #19	ENSGT00940000159788.b #21	ENSGT00390000013443.c #22	ENSGT00940000159869 #23	ENSGT00940000159005	ENSGT00940000160550 #24	ENSGT00940000161143 #25	ENSGT00470000042444 #26	ENSGT00940000162184 #27	ENSGT00940000162431 #28	ENSGT00940000162311 #29	ENSGT00390000014512 #30	ENSGT01050000244887.A.a.a.b #31	ENSGT00390000005100 #33	ENSGT00510000047802 #34	ENSGT01030000234518.C.a.a	ENSGT00530000064158 #35	ENSGT00940000160969 #36
Chiroptera	ANCESTRAL SPECIES	59	ENSGT00390000010157.b	ENSGT00940000160377	ENSGT00390000008862	ENSGT00940000158445 #7	ENSGT00940000155764.C #8	ENSGT00530000063679.B #9	ENSGT00940000156719 #11	ENSGT00940000158178 #13	ENSGT00940000159089 #14	ENSGT00940000159801.B #15	ENSGT00390000005605 #16	ENSGT00530000063000.a.a.b #17	ENSGT01050000244887.A.a.a.a #18	ENSGT00940000159543 #19	ENSGT00940000159788.b #21	ENSGT00390000013443.c #22	ENSGT00940000159869 #23	ENSGT00940000159005	ENSGT00940000160550 #24	ENSGT00940000161143 #25	ENSGT00470000042444 #26	ENSGT00940000162184 #27	ENSGT00940000162431 #28	ENSGT00940000162311 #29	ENSGT00390000014512 #30	ENSGT01050000244887.A.a.a.b #31	ENSGT00390000005100 #33	ENSGT00510000047802 #34	ENSGT01030000234518.C.a.a	ENSGT00530000064158 #35	ENSGT00940000160969 #36
Microchiroptera	ANCESTRAL SPECIES	53	ENSGT00390000010157.b	ENSGT00940000160377	ENSGT00390000008862	ENSGT00940000158445 #7	ENSGT00940000155764.C #8	ENSGT00530000063679.B #9	ENSGT00940000156719 #11	ENSGT00940000158178 #13	ENSGT00940000159089 #14	ENSGT00940000159801.B #15	ENSGT00390000005605 #16	ENSGT00530000063000.a.a.b #17	ENSGT01050000244887.A.a.a.a #18	ENSGT00940000159543 #19	ENSGT00940000159788.b #21	ENSGT00390000013443.c #22	ENSGT00940000159869 #23	ENSGT00940000159005	ENSGT00940000160550 #24	ENSGT00940000161143 #25	ENSGT00470000042444 #26	ENSGT00940000162184 #27	ENSGT00940000162431 #28	ENSGT00940000162311 #29	ENSGT00390000014512 #30	ENSGT01050000244887.A.a.a.b #31	ENSGT00390000005100 #33	ENSGT00510000047802 #34	ENSGT01030000234518.C.a.a	ENSGT00530000064158 #35	ENSGT00940000160969 #36
Microbat	MODERN SPECIES	1472													S1PR5 (ENSMLUG00000015144) #18	KEAP1 (ENSMLUG00000015137) #19	PDE4A (ENSMLUG00000015123) #21	CDC37 (ENSMLUG00000012357) #22	TYK2 (ENSMLUG00000012345) #23	ICAM3 (ENSMLUG00000012338)	RAVER1 (ENSMLUG00000012328) #24	FDX2 (ENSMLUG00000012316) #25	ICAM5 (ENSMLUG00000012304) #27	ICAM4 (ENSMLUG00000012295) #28	ICAM1 (ENSMLUG00000012289) #29	MRPL4 (ENSMLUG00000012280) #30	S1PR2 (ENSMLUG00000026451) #31	DNMT1 (ENSMLUG00000001347) #33	EIF3G (ENSMLUG00000014196) #34	P2RY11 (ENSMLUG00000014192)	PPAN (ENSMLUG00000014186) #35	ANGPTL6 (ENSMLUG00000029782) #36	SHFL (ENSMLUG00000022228) #37
Greater horseshoe bat	MODERN SPECIES	9	CARM1 (ENSRFEG00010013355)	C19orf38 (ENSRFEG00010013441)	TMED1 (ENSRFEG00010013495) #7	DNM2 (ENSRFEG00010013597) #8	QTRT1 (ENSRFEG00010013865) #9	ILF3 (ENSRFEG00010013937) #11	SLC44A2 (ENSRFEG00010014184) #13	AP1M2 (ENSRFEG00010014366) #14	CDKN2D (ENSRFEG00010014449) #15	KRI1 (ENSRFEG00010014507) #16	ATG4D (ENSRFEG00010014575) #17	S1PR5 (ENSRFEG00010014610) #18	KEAP1 (ENSRFEG00010014642) #19	ENSRFEG00010014682	PDE4A (ENSRFEG00010014770) #21	CDC37 (ENSRFEG00010015698) #22	TYK2 (ENSRFEG00010015752) #23	ICAM3 (ENSRFEG00010015850)	RAVER1 (ENSRFEG00010015894) #24	FDX2 (ENSRFEG00010016631) #25	ENSRFEG00010016728 #26	ICAM5 (ENSRFEG00010016803) #27	ICAM4 (ENSRFEG00010016957) #28	ICAM1 (ENSRFEG00010017025) #29	MRPL4 (ENSRFEG00010017044) #30	EIF3G (ENSRFEG00010018651) #34	P2RY11 (ENSRFEG00010018700)	PPAN (ENSRFEG00010018720) #35	ANGPTL6 (ENSRFEG00010005369) #36	SHFL (ENSRFEG00010005394) #37	ENSRFEG00010005567
Megabat	MODERN SPECIES	2074													S1PR5 (ENSPVAG00000003695) #18	KEAP1 (ENSPVAG00000003694) #19	PDE4A (ENSPVAG00000003693) #21	CDC37 (ENSPVAG00000003692) #22	TYK2 (ENSPVAG00000003691) #23	ICAM3 (ENSPVAG00000003690)	RAVER1 (ENSPVAG00000003689) #24	FDX2 (ENSPVAG00000003688) #25	ZGLP1 (ENSPVAG00000003687) #26	ICAM5 (ENSPVAG00000003686) #27	ENSPVAG00000003685 #28	ICAM1 (ENSPVAG00000003684) #29	MRPL4 (ENSPVAG00000003681) #30	S1PR2 (ENSPVAG00000003680) #31	DNMT1 (ENSPVAG00000003676) #33	EIF3G (ENSPVAG00000003674) #34	ENSPVAG00000003673 #35	ANGPTL6 (ENSPVAG00000003671) #36	SHFL (ENSPVAG00000003670) #37
Equus	ANCESTRAL SPECIES	53	ENSGT00940000160377	ENSGT00390000008862	ENSGT00940000158445 #7	ENSGT00940000155764.C #8	ENSGT00530000063679.B #9	ENSGT00940000156719 #11	ENSGT00900000143551	ENSGT00940000158178 #13	ENSGT00940000159089 #14	ENSGT00940000159801.B #15	ENSGT00390000005605 #16	ENSGT00530000063000.a.a.b #17	ENSGT01050000244887.A.a.a.a #18	ENSGT00940000159543 #19	ENSGT00940000159788.b #21	ENSGT00390000013443.c #22	ENSGT00390000016292.i.a.h	ENSGT00940000159869 #23	ENSGT00940000159005	ENSGT00940000160550 #24	ENSGT00940000161143 #25	ENSGT00470000042444 #26	ENSGT00940000162184 #27	ENSGT00940000162431 #28	ENSGT00940000162311 #29	ENSGT00390000014512 #30	ENSGT01050000244887.A.a.a.b #31	ENSGT00390000005100 #33	ENSGT00510000047802 #34	ENSGT01030000234518.C.a.a	ENSGT00530000064158 #35
Donkey	MODERN SPECIES	12	CARM1 (ENSEASG00005007536)	ENSEASG00005030995	TMED1 (ENSEASG00005031420) #7	DNM2 (ENSEASG00005007575) #8	QTRT1 (ENSEASG00005008453) #9	ILF3 (ENSEASG00005008476) #11	ENSEASG00005010451	SLC44A2 (ENSEASG00005008771) #13	AP1M2 (ENSEASG00005010464) #14	CDKN2D (ENSEASG00005026481) #15	KRI1 (ENSEASG00005010499) #16	ATG4D (ENSEASG00005038617) #17	S1PR5 (ENSEASG00005027849) #18	KEAP1 (ENSEASG00005010513) #19	PDE4A (ENSEASG00005010517) #21	CDC37 (ENSEASG00005036500) #22	ENSEASG00005034109	TYK2 (ENSEASG00005010539) #23	ICAM3 (ENSEASG00005010542)	RAVER1 (ENSEASG00005010544) #24	FDX2 (ENSEASG00005010545) #25	ENSEASG00005030776 #26	ICAM5 (ENSEASG00005010548) #27	ICAM4 (ENSEASG00005024479) #28	ENSEASG00005010553 #29	MRPL4 (ENSEASG00005010556) #30	S1PR2 (ENSEASG00005026403) #31	DNMT1 (ENSEASG00005010561) #33	ENSEASG00005010571 #34	P2RY11 (ENSEASG00005034778)	PPAN (ENSEASG00005010574) #35
Horse	MODERN SPECIES	28	YIPF2 (ENSECAG00000012720)	CARM1 (ENSECAG00000013563)	C7H19orf38 (ENSECAG00000019977)	TMED1 (ENSECAG00000021522) #7	DNM2 (ENSECAG00000022341) #8	QTRT1 (ENSECAG00000014773) #9	ILF3 (ENSECAG00000017640) #11	SLC44A2 (ENSECAG00000010363) #13	ENSECAG00000039388	ATG4D (ENSECAG00000015306) #17	CDKN2D (ENSECAG00000034985) #15	KRI1 (ENSECAG00000011767) #16	S1PR5 (ENSECAG00000031779) #18	KEAP1 (ENSECAG00000020533) #19	PDE4A (ENSECAG00000023182) #21	CDC37 (ENSECAG00000012896) #22	ENSECAG00000004638	TYK2 (ENSECAG00000020260) #23	RAVER1 (ENSECAG00000024966) #24	FDX2 (ENSECAG00000008220) #25	ZGLP1 (ENSECAG00000028652) #26	ICAM5 (ENSECAG00000009299) #27	ICAM4 (ENSECAG00000012805) #28	S1PR2 (ENSECAG00000004727) #31	ICAM1 (ENSECAG00000013883) #29	MRPL4 (ENSECAG00000017013) #30	DNMT1 (ENSECAG00000026909) #33	ANGPTL6 (ENSECAG00000024918) #36	PPAN (ENSECAG00000024469) #35	SHFL (ENSECAG00000024957) #37	ENSECAG00000054461
Atlantogenata	ANCESTRAL SPECIES	41	ENSGT00390000010157.b	ENSGT00940000160377	ENSGT00390000008862	ENSGT00940000158445 #7	ENSGT00940000155764.C #8	ENSGT00530000063679.B #9	ENSGT00940000156719 #11	ENSGT00940000158178 #13	ENSGT00940000159089 #14	ENSGT00940000159801.B #15	ENSGT00390000005605 #16	ENSGT00530000063000.a.a.b #17	ENSGT01050000244887.A.a.a.a #18	ENSGT00940000159543 #19	ENSGT00940000159788.b #21	ENSGT00390000013443.c #22	ENSGT00940000159869 #23	ENSGT00940000159005	ENSGT00940000160550 #24	ENSGT00940000161143 #25	ENSGT00470000042444 #26	ENSGT00940000162184 #27	ENSGT00940000162431 #28	ENSGT00940000162311 #29	ENSGT00390000014512 #30	ENSGT01050000244887.A.a.a.b #31	ENSGT00390000005100 #33	ENSGT00510000047802 #34	ENSGT01030000234518.C.a.a	ENSGT00530000064158 #35	ENSGT00940000160969 #36
Afrotheria	ANCESTRAL SPECIES	38	ENSGT00390000010157.b	ENSGT00940000160377	ENSGT00390000008862	ENSGT00940000158445 #7	ENSGT00940000155764.C #8	ENSGT00530000063679.B #9	ENSGT00940000156719 #11	ENSGT00940000158178 #13	ENSGT00940000159089 #14	ENSGT00940000159801.B #15	ENSGT00390000005605 #16	ENSGT00530000063000.a.a.b #17	ENSGT01050000244887.A.a.a.a #18	ENSGT00940000159543 #19	ENSGT00940000159788.b #21	ENSGT00390000013443.c #22	ENSGT00940000159869 #23	ENSGT00940000159005	ENSGT00940000160550 #24	ENSGT00940000161143 #25	ENSGT00470000042444 #26	ENSGT00940000162184 #27	ENSGT00940000162431 #28	ENSGT00940000162311 #29	ENSGT00390000014512 #30	ENSGT01050000244887.A.a.a.b #31	ENSGT00390000005100 #33	ENSGT00510000047802 #34	ENSGT01030000234518.C.a.a	ENSGT00530000064158 #35	ENSGT00940000160969 #36
Afrotheria_a	ANCESTRAL SPECIES	39	ENSGT00390000010157.b	ENSGT00940000160377	ENSGT00390000008862	ENSGT00940000158445 #7	ENSGT00940000155764.C #8	ENSGT00530000063679.B #9	ENSGT00940000156719 #11	ENSGT00940000158178 #13	ENSGT00940000159089 #14	ENSGT00940000159801.B #15	ENSGT00390000005605 #16	ENSGT00530000063000.a.a.b #17	ENSGT01050000244887.A.a.a.a #18	ENSGT00940000159543 #19	ENSGT00940000159788.b #21	ENSGT00390000013443.c #22	ENSGT00940000159869 #23	ENSGT00940000159005	ENSGT00940000160550 #24	ENSGT00940000161143 #25	ENSGT00470000042444 #26	ENSGT00940000162184 #27	ENSGT00940000162431 #28	ENSGT00940000162311 #29	ENSGT00390000014512 #30	ENSGT01050000244887.A.a.a.b #31	ENSGT00390000005100 #33	ENSGT00510000047802 #34	ENSGT01030000234518.C.a.a	ENSGT00530000064158 #35	ENSGT00940000160969 #36
Hyrax	MODERN SPECIES	606									AP1M2 (ENSPCAG00000014461) #14	CDKN2D (ENSPCAG00000014414) #15	KRI1 (ENSPCAG00000014272) #16	ATG4D (ENSPCAG00000014194) #17	S1PR5 (ENSPCAG00000014178) #18	KEAP1 (ENSPCAG00000014140) #19	PDE4A (ENSPCAG00000014052) #21	CDC37 (ENSPCAG00000014005) #22
Elephant	MODERN SPECIES	270	YIPF2 (ENSLAFG00000004436)	CARM1 (ENSLAFG00000004431)	C19orf38 (ENSLAFG00000030795)	TMED1 (ENSLAFG00000026891) #7	DNM2 (ENSLAFG00000003417) #8	QTRT1 (ENSLAFG00000020858) #9	ILF3 (ENSLAFG00000021667) #11	SLC44A2 (ENSLAFG00000016829) #13	AP1M2 (ENSLAFG00000001589) #14	CDKN2D (ENSLAFG00000032625) #15	KRI1 (ENSLAFG00000021854) #16	ATG4D (ENSLAFG00000011701) #17	S1PR5 (ENSLAFG00000030547) #18	KEAP1 (ENSLAFG00000017907) #19	ENSLAFG00000032058 #21	CDC37 (ENSLAFG00000026818) #22	TYK2 (ENSLAFG00000003922) #23	RAVER1 (ENSLAFG00000003664) #24	FDX2 (ENSLAFG00000022295) #25	ZGLP1 (ENSLAFG00000029015) #26	ICAM5 (ENSLAFG00000026578) #27	ENSLAFG00000013278 #28	MRPL4 (ENSLAFG00000015366) #30	S1PR2 (ENSLAFG00000028576) #31	DNMT1 (ENSLAFG00000002818) #33	EIF3G (ENSLAFG00000006469) #34	P2RY11 (ENSLAFG00000031035)	PPAN (ENSLAFG00000016399) #35	ANGPTL6 (ENSLAFG00000016395) #36	SHFL (ENSLAFG00000022271) #37	ENSLAFG00000008805
Tenrec	MODERN SPECIES	829																ENSETEG00000002505 #22
Xenarthra	ANCESTRAL SPECIES	563																ENSGT00390000013443.c #22	ENSGT00940000159869 #23	ENSGT00940000160550 #24	ENSGT00940000169475	ENSGT00470000042444 #26	ENSGT00940000162184 #27	ENSGT00940000162431 #28	ENSGT00940000162311 #29	ENSGT00390000014512 #30
Armadillo	MODERN SPECIES	982																CDC37 (ENSDNOG00000033909) #22	TYK2 (ENSDNOG00000039883) #23	RAVER1 (ENSDNOG00000035742) #24	ENSDNOG00000040653	ENSDNOG00000041416 #26	ENSDNOG00000042110 #27	ICAM4 (ENSDNOG00000038213) #28	ICAM1 (ENSDNOG00000039429) #29	ENSDNOG00000044263 #30
Marsupialia	ANCESTRAL SPECIES	1	ENSGT00390000008862	ENSGT00940000158445 #7	ENSGT00940000155764.C #8	ENSGT00530000063679.B #9	ENSGT00940000163421.j.b	ENSGT00940000163421.j.a.a	ENSGT00940000156719 #11	ENSGT00940000158178 #13	ENSGT00940000159089 #14	ENSGT00940000159801.B #15	ENSGT00390000005605 #16	ENSGT00530000063000.a.a.b #17	ENSGT01050000244887.A.a.a.a #18	ENSGT00940000159543 #19	ENSGT00940000159788.b #21	ENSGT00390000013443.c #22	ENSGT00940000159869 #23	ENSGT00940000159005.i	ENSGT00940000160550 #24	ENSGT00940000161143 #25	ENSGT00470000042444 #26	ENSGT00940000162184 #27	ENSGT00940000162431 #28	ENSGT00940000159005.j	ENSGT00390000014512 #30	ENSGT01050000244887.A.a.a.b #31	ENSGT00390000005100.r.a #33	ENSGT00390000005100.r.b #33	ENSGT00510000047802 #34	ENSGT01030000234518.C.a.a	ENSGT00530000064158 #35
Opossum	MODERN SPECIES	2	DNM2 (ENSMODG00000006064) #8	QTRT1 (ENSMODG00000005954) #9	ENSMODG00000029059	ENSMODG00000028035	ENSMODG00000005923	ILF3 (ENSMODG00000005911) #11	SLC44A2 (ENSMODG00000005859) #13	AP1M2 (ENSMODG00000005838) #14	CDKN2D (ENSMODG00000005828) #15	KRI1 (ENSMODG00000005816) #16	ATG4D (ENSMODG00000005790) #17	S1PR5 (ENSMODG00000005761) #18	KEAP1 (ENSMODG00000005745) #19	ENSMODG00000005727 #21	ENSMODG00000045262 #21	CDC37 (ENSMODG00000005701) #22	TYK2 (ENSMODG00000005684) #23	ENSMODG00000049607	RAVER1 (ENSMODG00000005584) #24	ENSMODG00000005546 #25	ICAM5 (ENSMODG00000040312) #27	ENSMODG00000028933	MRPL4 (ENSMODG00000005476) #30	S1PR2 (ENSMODG00000028318) #31	DNMT1 (ENSMODG00000048820) #33	ENSMODG00000005463 #33	EIF3G (ENSMODG00000005173) #34	P2RY11 (ENSMODG00000024209)	PPAN (ENSMODG00000005158) #35	ANGPTL6 (ENSMODG00000005137) #36	SHFL (ENSMODG00000005120) #37
Marsupialia_b	ANCESTRAL SPECIES	2	ENSGT00940000155764.C #8	ENSGT00530000063679.B #9	ENSGT00940000163421.j.b	ENSGT00940000163421.j.a.b	ENSGT00940000163421.j.a.a	ENSGT00940000163421.i	ENSGT00940000156719 #11	ENSGT00940000158178 #13	ENSGT00940000159089 #14	ENSGT00940000159801.B #15	ENSGT00390000005605 #16	ENSGT00530000063000.a.a.b #17	ENSGT01050000244887.A.a.a.a #18	ENSGT00940000159543 #19	ENSGT00940000159788.b #21	ENSGT00390000013443.c #22	ENSGT00940000159869 #23	ENSGT00940000159005.i	ENSGT00940000160550 #24	ENSGT00940000161143 #25	ENSGT00470000042444 #26	ENSGT00940000162184 #27	ENSGT00940000162431 #28	ENSGT00940000159005.j	ENSGT00390000014512 #30	ENSGT01050000244887.A.a.a.b #31	ENSGT00390000005100.r.a #33	ENSGT00390000005100.r.b #33	ENSGT00390000005100.q #33	ENSGT00510000047802 #34	ENSGT01030000234518.C.a.a
Diprotodontia	ANCESTRAL SPECIES	20	ENSGT00940000155764.C #8	ENSGT00530000063679.B #9	ENSGT00940000163421.j.b	ENSGT00940000163421.j.a.b	ENSGT00940000163421.j.a.a	ENSGT00940000163421.i	ENSGT00940000156719 #11	ENSGT00940000158178 #13	ENSGT00940000159089 #14	ENSGT00940000159801.B #15	ENSGT00390000005605 #16	ENSGT00530000063000.a.a.b #17	ENSGT01050000244887.A.a.a.a #18	ENSGT00940000159543 #19	ENSGT00940000159788.b #21	ENSGT00390000013443.c #22	ENSGT00940000159869 #23	ENSGT00940000160550 #24	ENSGT00940000161143 #25	ENSGT00470000042444 #26	ENSGT00940000162184 #27	ENSGT00940000162431 #28	ENSGT00940000159005.j	ENSGT00390000014512 #30	ENSGT01050000244887.A.a.a.b #31	ENSGT00390000005100.r.a #33	ENSGT00390000005100.r.b #33	ENSGT00390000005100.q #33	ENSGT00510000047802 #34	ENSGT01030000234518.C.a.a	ENSGT00530000064158 #35
Diprotodontia_a	ANCESTRAL SPECIES	16	ENSGT00940000155764.C #8	ENSGT00530000063679.B #9	ENSGT00940000163421.j.b	ENSGT00940000163421.j.a.b	ENSGT00940000163421.j.a.a	ENSGT00940000163421.i	ENSGT00940000156719 #11	ENSGT00940000158178 #13	ENSGT00940000159089 #14	ENSGT00940000159801.B #15	ENSGT00390000005605 #16	ENSGT00530000063000.a.a.b #17	ENSGT01050000244887.A.a.a.a #18	ENSGT00940000159543 #19	ENSGT00940000159788.b #21	ENSGT00390000013443.c #22	ENSGT00940000159869 #23	ENSGT00940000160550 #24	ENSGT00940000161143 #25	ENSGT00470000042444 #26	ENSGT00940000162184 #27	ENSGT00940000162431 #28	ENSGT00940000159005.j	ENSGT00390000014512 #30	ENSGT01050000244887.A.a.a.b #31	ENSGT00390000005100.r.a #33	ENSGT00390000005100.r.b #33	ENSGT00390000005100.q #33	ENSGT00510000047802 #34	ENSGT01030000234518.C.a.a	ENSGT00530000064158 #35
Common wonbat	MODERN SPECIES	764										ILF3 (ENSVURG00010024966) #11	SLC44A2 (ENSVURG00010024962) #13	AP1M2 (ENSVURG00010024957) #14	CDKN2D (ENSVURG00010024956) #15	KRI1 (ENSVURG00010024954) #16	ATG4D (ENSVURG00010024952) #17	CDC37 (ENSVURG00010024950) #22	ENSVURG00010024947 #29	RAVER1 (ENSVURG00010024949) #24	FDX2 (ENSVURG00010024945) #25	ENSVURG00010024942 #26	ICAM5 (ENSVURG00010024941) #27	ENSVURG00010024939 #28	ENSVURG00010024937	MRPL4 (ENSVURG00010024936) #30	S1PR2 (ENSVURG00010024934) #31	ENSVURG00010024933 #33	ENSVURG00010024929 #33	EIF3G (ENSVURG00010024928) #34	P2RY11 (ENSVURG00010024926)	PPAN (ENSVURG00010024925) #35	ANGPTL6 (ENSVURG00010024924) #36
koala	MODERN SPECIES	58	ENSPCIG00000017107	ENSPCIG00000017106	ENSPCIG00000034604	ENSPCIG00000032816	ENSPCIG00000015441	ENSPCIG00000033447	ILF3 (ENSPCIG00000015447) #11	SLC44A2 (ENSPCIG00000015531) #13	AP1M2 (ENSPCIG00000016957) #14	CDKN2D (ENSPCIG00000035848) #15	KRI1 (ENSPCIG00000018661) #16	ATG4D (ENSPCIG00000018664) #17	S1PR5 (ENSPCIG00000018666) #18	KEAP1 (ENSPCIG00000018668) #19	PDE4A (ENSPCIG00000018672) #21	CDC37 (ENSPCIG00000018680) #22	TYK2 (ENSPCIG00000018684) #23	ENSPCIG00000018689	RAVER1 (ENSPCIG00000018695) #24	ENSPCIG00000034101 #26	ICAM5 (ENSPCIG00000018766) #27	ENSPCIG00000036585 #28	ENSPCIG00000018769	MRPL4 (ENSPCIG00000033688) #30	S1PR2 (ENSPCIG00000018778) #31	ENSPCIG00000018780 #33	ENSPCIG00000018782 #33	ENSPCIG00000033373 #33	EIF3G (ENSPCIG00000018783) #34	P2RY11 (ENSPCIG00000018784)	PPAN (ENSPCIG00000018786) #35
Wallaby	MODERN SPECIES	10064																CDC37 (ENSMEUG00000002278) #22
Tasmanian devil	MODERN SPECIES		ENSSHAG00000001700	ENSSHAG00000000578	ENSSHAG00000001997	ENSSHAG00000031461	ENSSHAG00000024820	ENSSHAG00000001788	ENSSHAG00000001712 #11	SLC44A2 (ENSSHAG00000004341) #13	AP1M2 (ENSSHAG00000005131) #14	CDKN2D (ENSSHAG00000005312) #15	KRI1 (ENSSHAG00000005378) #16	ATG4D (ENSSHAG00000005520) #17	S1PR5 (ENSSHAG00000006242) #18	KEAP1 (ENSSHAG00000024185) #19	PDE4A (ENSSHAG00000006562) #21	CDC37 (ENSSHAG00000022863) #22	TYK2 (ENSSHAG00000007617) #23	ENSSHAG00000008104	RAVER1 (ENSSHAG00000008181) #24	ENSSHAG00000028563 #26	ENSSHAG00000025294 #28	ICAM5 (ENSSHAG00000032328) #27	MRPL4 (ENSSHAG00000008539) #30	S1PR2 (ENSSHAG00000028683) #31	ENSSHAG00000008894 #33	ENSSHAG00000027218 #33	ENSSHAG00000024917 #33	EIF3G (ENSSHAG00000009231) #34	ENSSHAG00000009305 #35	ANGPTL6 (ENSSHAG00000009395) #36	SHFL (ENSSHAG00000009453) #37
Platypus	MODERN SPECIES	85	UBXN6 (ENSOANG00000002985)	CHAF1A (ENSOANG00000030964)	ENSOANG00000046062	SH3GL1 (ENSOANG00000012873)	MPND (ENSOANG00000038751)	QTRT1 (ENSOANG00000044363) #9	ENSOANG00000042646 #11	SLC44A2 (ENSOANG00000050628) #13	AP1M2 (ENSOANG00000010455) #14	CDKN2D (ENSOANG00000010456) #15	KRI1 (ENSOANG00000039875) #16	ATG4D (ENSOANG00000009372) #17	S1PR5 (ENSOANG00000049448) #18	KEAP1 (ENSOANG00000009371) #19	ENSOANG00000043439 #21	CDC37 (ENSOANG00000013393) #22	TYK2 (ENSOANG00000037034) #23	RAVER1 (ENSOANG00000039656) #24	FDX2 (ENSOANG00000022666) #25	ENSOANG00000031406	ENSOANG00000013892	MRPL4 (ENSOANG00000045427) #30	S1PR2 (ENSOANG00000037970) #31	DNMT1 (ENSOANG00000012255) #33	EIF3G (ENSOANG00000028960) #34	PPAN (ENSOANG00000006740) #35	ANGPTL6 (ENSOANG00000022103) #36	RDH8 (ENSOANG00000041813)	OLFM2 (ENSOANG00000042727)	PIN1 (ENSOANG00000037571)	ENSOANG00000051128
Sauria	ANCESTRAL SPECIES	22	ENSGT00940000155764.C #8	ENSGT00530000063679.B #9	ENSGT00940000166551	ENSGT00940000163421	ENSGT00940000156719 #11	ENSGT00940000158178 #13	ENSGT00940000159089 #14	ENSGT00940000159801.B #15	ENSGT00390000005605 #16	ENSGT00950000182923.A	ENSGT00530000063000.a.a.b #17	ENSGT01050000244887.A.a.a.a #18	ENSGT00940000159543 #19	ENSGT00390000005584	ENSGT00940000159788.b #21	ENSGT00390000013443.c #22	ENSGT00940000159869 #23	ENSGT00940000160550 #24	ENSGT00940000161143 #25	ENSGT00470000042444 #26	ENSGT00940000159005	ENSGT00390000014512 #30	ENSGT01050000244887.A.a.a.b #31	ENSGT00940000172524	ENSGT00390000005100 #33	ENSGT00940000154535.B	ENSGT00940000159148	ENSGT00940000161852.y.b	ENSGT00640000091578	ENSGT00390000001945	ENSGT00390000003354
Archelosauria	ANCESTRAL SPECIES	40	ENSGT00940000155764.C #8	ENSGT00530000063679.B #9	ENSGT00940000166551	ENSGT00940000163421	ENSGT00940000156719 #11	ENSGT00940000158178 #13	ENSGT00940000159089 #14	ENSGT00940000159801.B #15	ENSGT00390000005605 #16	ENSGT00950000182923.A	ENSGT00530000063000.a.a.b #17	ENSGT01050000244887.A.a.a.a #18	ENSGT00940000159543 #19	ENSGT00390000005584	ENSGT00940000159788.b #21	ENSGT00390000013443.c #22	ENSGT00940000159869 #23	ENSGT00940000160550 #24	ENSGT00940000161143 #25	ENSGT00470000042444 #26	ENSGT00940000159005	ENSGT00390000014512 #30	ENSGT01050000244887.A.a.a.b #31	ENSGT00940000172524	ENSGT00390000005100 #33	ENSGT00940000155412.b	ENSGT00940000154535.C	ENSGT00940000162394	ENSGT00940000159148	ENSGT00940000161852.y.b	ENSGT00640000091578
Cryptodira	ANCESTRAL SPECIES	45	ENSGT00940000158445 #7	ENSGT00940000155764.C #8	ENSGT00530000063679.B #9	ENSGT00940000166551	ENSGT00940000163421	ENSGT00940000156719 #11	ENSGT00940000158178 #13	ENSGT00940000159089 #14	ENSGT00940000159801.B #15	ENSGT00390000005605 #16	ENSGT00530000063000.a.a.b #17	ENSGT01050000244887.A.a.a.a #18	ENSGT00940000159543 #19	ENSGT00390000005584	ENSGT00940000159788.b #21	ENSGT00390000013443.c #22	ENSGT00940000159869 #23	ENSGT00940000160550 #24	ENSGT00940000161143 #25	ENSGT00470000042444 #26	ENSGT00940000159005	ENSGT00390000014512 #30	ENSGT01050000244887.A.a.a.b #31	ENSGT00940000172524	ENSGT00390000005100 #33	ENSGT00510000047802 #34	ENSGT00940000162394	ENSGT00940000159148	ENSGT00940000161852.y.b	ENSGT00640000091578	ENSGT00390000001945
Testudinoidea	ANCESTRAL SPECIES	38	ENSGT00940000158445 #7	ENSGT00940000155764.C #8	ENSGT00530000063679.B #9	ENSGT00940000166551	ENSGT00940000163421	ENSGT00940000156719 #11	ENSGT00940000158178.f #13	ENSGT00940000159089 #14	ENSGT00940000159801.B #15	ENSGT00390000005605 #16	ENSGT00530000063000.a.a.b #17	ENSGT01050000244887.A.a.a.a #18	ENSGT00940000159543 #19	ENSGT00390000005584	ENSGT00940000159788.b #21	ENSGT00390000013443.c #22	ENSGT00940000159869 #23	ENSGT00940000160550 #24	ENSGT00940000161143 #25	ENSGT00470000042444 #26	ENSGT00940000159005.s.a.b	ENSGT00940000159005.s.b.b	ENSGT00390000014512 #30	ENSGT01050000244887.A.a.a.b #31	ENSGT00940000172524	ENSGT00390000005100 #33	ENSGT00510000047802 #34	ENSGT00940000162394	ENSGT00940000159148	ENSGT00940000161852.y.b	ENSGT00640000091578
Emydidae	ANCESTRAL SPECIES	48	ENSGT00940000155764.C #8	ENSGT00530000063679.B #9	ENSGT00940000166551	ENSGT00940000163421	ENSGT00940000156719 #11	ENSGT00940000158178.f #13	ENSGT00940000158178.e #13	ENSGT00940000159089 #14	ENSGT00940000159801.B #15	ENSGT00390000005605 #16	ENSGT00530000063000.a.a.b #17	ENSGT01050000244887.A.a.a.a #18	ENSGT00940000159543 #19	ENSGT00390000005584	ENSGT00940000159788.b #21	ENSGT00390000013443.c #22	ENSGT00940000159869 #23	ENSGT00940000160550 #24	ENSGT00940000161143 #25	ENSGT00470000042444 #26	ENSGT00940000159005.s.a.b	ENSGT00940000159005.s.a.a	ENSGT00390000014512 #30	ENSGT01050000244887.A.a.a.b #31	ENSGT00940000172524	ENSGT00390000005100 #33	ENSGT00510000047802 #34	ENSGT00940000162394	ENSGT00940000159148	ENSGT00940000161852.y.b	ENSGT00640000091578
Three-toed box turtle	MODERN SPECIES	382	CARM1 (ENSTMTG00000022282)	TMED1 (ENSTMTG00000022306) #7	DNM2 (ENSTMTG00000022315) #8	ENSTMTG00000022328	ILF3 (ENSTMTG00000022335) #11	SLC44A2 (ENSTMTG00000022351) #13	ENSTMTG00000022355 #13	AP1M2 (ENSTMTG00000022362) #14	KRI1 (ENSTMTG00000022373) #16	ENSTMTG00000022382	ATG4D (ENSTMTG00000022388) #17	ENSTMTG00000022393 #18	KEAP1 (ENSTMTG00000022398) #19	ENSTMTG00000022401	PDE4A (ENSTMTG00000022405) #21	CDC37 (ENSTMTG00000022410) #22	TYK2 (ENSTMTG00000022414) #23	RAVER1 (ENSTMTG00000003375) #24	ENSTMTG00000003427	ENSTMTG00000003458	MRPL4 (ENSTMTG00000003492) #30	S1PR2 (ENSTMTG00000003524) #31	DNMT1 (ENSTMTG00000003556) #33	EIF3G (ENSTMTG00000003638) #34	ENSTMTG00000003662	PPAN (ENSTMTG00000003680) #35	OLFM2 (ENSTMTG00000003714)	ENSTMTG00000003772	PIN1 (ENSTMTG00000003874)	FBXL12 (ENSTMTG00000003883)	ENSTMTG00000003893
painted turtle	MODERN SPECIES	1056							ENSCPBG00000005504	SHFL (ENSCPBG00000005484) #37	MRPL4 (ENSCPBG00000005432) #30	S1PR2 (ENSCPBG00000005422) #31	ENSCPBG00000005418	DNMT1 (ENSCPBG00000005402) #33	EIF3G (ENSCPBG00000005386) #34	ENSCPBG00000005378	PPAN (ENSCPBG00000005372) #35	CDC37 (ENSCPBG00000005363) #22	TYK2 (ENSCPBG00000005356) #23	RAVER1 (ENSCPBG00000005349) #24	FDX2 (ENSCPBG00000005313) #25	ENSCPBG00000005305 #26	ENSCPBG00000005297	ENSCPBG00000005291	ENSCPBG00000005282	ENSCPBG00000005279	ENSCPBG00000005273 ##21
Testudinidae	ANCESTRAL SPECIES	59	ENSGT00940000158445 #7	ENSGT00940000155764.C #8	ENSGT00530000063679.B #9	ENSGT00940000166551	ENSGT00940000163421	ENSGT00940000156719 #11	ENSGT00940000158178.f #13	ENSGT00940000159089 #14	ENSGT00940000159801.B #15	ENSGT00390000005605 #16	ENSGT00530000063000.a.a.b #17	ENSGT01050000244887.A.a.a.a #18	ENSGT00940000159543 #19	ENSGT00390000005584	ENSGT00940000159788.b #21	ENSGT00390000013443.c #22	ENSGT00940000159869 #23	ENSGT00940000160550 #24	ENSGT00940000161143 #25	ENSGT00940000159005.s.a.b	ENSGT00940000159005.s.b.b	ENSGT00390000014512 #30	ENSGT01050000244887.A.a.a.b #31	ENSGT00390000005100 #33	ENSGT00510000047802 #34	ENSGT00390000005065 #37	ENSGT00940000164135
Goode s thornscrub tortoise	MODERN SPECIES	152	TMED1 (ENSGEVG00005012804) #7	DNM2 (ENSGEVG00005012668) #8	QTRT1 (ENSGEVG00005012604) #9	ENSGEVG00005012568	ILF3 (ENSGEVG00005012517) #11	SLC44A2 (ENSGEVG00005012442) #13	AP1M2 (ENSGEVG00005012248) #14	CDKN2D (ENSGEVG00005012225) #15	ENSGEVG00005012156 #16	ENSGEVG00005012135	ATG4D (ENSGEVG00005012059) #17	S1PR5 (ENSGEVG00005011999) #18	KEAP1 (ENSGEVG00005011978) #19	SPC24 (ENSGEVG00005011958)	PDE4A (ENSGEVG00005011879) #21	CDC37 (ENSGEVG00005011840) #22	TYK2 (ENSGEVG00005011784) #23	RAVER1 (ENSGEVG00005019864) #24	ENSGEVG00005019859 #25	ENSGEVG00005019771	ENSGEVG00005019702	ENSGEVG00005019695	ENSGEVG00005019679	MRPL4 (ENSGEVG00005019653) #30	S1PR2 (ENSGEVG00005019646) #31	DNMT1 (ENSGEVG00005019590) #33	EIF3G (ENSGEVG00005019571) #34	ENSGEVG00005019563	PPAN (ENSGEVG00005019552) #35	ENSGEVG00005019536	ENSGEVG00005019459
Abingdon island giant tortoise	MODERN SPECIES	1690								YES1 (ENSCABG00000019185)	ENOSF1 (ENSCABG00000019191)	TYMS (ENSCABG00000019196)	CLUL1 (ENSCABG00000019201)	COLEC12 (ENSCABG00000019235)	ENSCABG00000019246	USP14 (ENSCABG00000019378)	ENSCABG00000019380	CDC37 (ENSCABG00000019382) #22	TYK2 (ENSCABG00000019387) #23	RAVER1 (ENSCABG00000019389) #24	FDX2 (ENSCABG00000019390) #25	ENSCABG00000019393	ENSCABG00000000186
Chinese turtle	MODERN SPECIES	2140																CDC37 (ENSPSIG00000013907) #22
Archosauria	ANCESTRAL SPECIES	34	ENSGT00390000010157.b	ENSGT00940000160377	ENSGT00940000158445 #7	ENSGT00940000155764.C #8	ENSGT00530000063679.B #9	ENSGT00940000163421	ENSGT00940000156719 #11	ENSGT00940000158178 #13	ENSGT00940000159089 #14	ENSGT00390000005605 #16	ENSGT00530000063000.a.a.b #17	ENSGT01050000244887.A.a.a.a #18	ENSGT00940000159543 #19	ENSGT00390000005584	ENSGT00940000159788.b #21	ENSGT00390000013443.c #22	ENSGT00940000159869 #23	ENSGT00940000160550 #24	ENSGT00940000161143 #25	ENSGT00940000159005	ENSGT00390000014512 #30	ENSGT01050000244887.A.a.a.b #31	ENSGT00390000005100 #33	ENSGT00510000047802 #34	ENSGT01030000234518.C.a.a	ENSGT00530000064158 #35	ENSGT00940000155412.b	ENSGT00940000154535.C	ENSGT00940000162394	ENSGT00940000159148	ENSGT00940000161852.y.b
Aves	ANCESTRAL SPECIES	34	ENSGT00940000160377	ENSGT00940000158445 #7	ENSGT00940000155764.C #8	ENSGT00530000063679.B #9	ENSGT00940000163421	ENSGT00940000156719 #11	ENSGT00980000198857	ENSGT00940000158178 #13	ENSGT00940000159089 #14	ENSGT00390000005605 #16	ENSGT00530000063000.a.a.b #17	ENSGT01050000244887.A.a.a.a #18	ENSGT00940000159543 #19	ENSGT00390000005584	ENSGT00940000159788.b #21	ENSGT00390000013443.c #22	ENSGT00940000159869 #23	ENSGT00940000160550 #24	ENSGT00940000161143 #25	ENSGT00940000159005	ENSGT00390000014512 #30	ENSGT01050000244887.A.a.a.b #31	ENSGT00390000005100 #33	ENSGT00510000047802 #34	ENSGT01030000234518.C.a.a	ENSGT00530000064158 #35	ENSGT00940000155412.b	ENSGT00940000154535.C	ENSGT00940000162394	ENSGT00940000159148	ENSGT00940000161852.y.b
Neognathae	ANCESTRAL SPECIES	34	ENSGT00940000160377	ENSGT00940000158445 #7	ENSGT00940000155764.C #8	ENSGT00530000063679.B #9	ENSGT00940000163421	ENSGT00940000156719 #11	ENSGT00980000198857	ENSGT00940000158178 #13	ENSGT00940000159089 #14	ENSGT00390000005605 #16	ENSGT00530000063000.a.a.b #17	ENSGT01050000244887.A.a.a.a #18	ENSGT00940000159543 #19	ENSGT00390000005584	ENSGT00940000159788.b.e.a #21	ENSGT00390000013443.c #22	ENSGT00940000159869 #23	ENSGT00940000160550 #24	ENSGT00940000161143 #25	ENSGT00940000159005.p	ENSGT00390000014512 #30	ENSGT01050000244887.A.a.a.b #31	ENSGT00390000005100 #33	ENSGT00510000047802 #34	ENSGT01030000234518.C.a.a	ENSGT00530000064158 #35	ENSGT00940000155412.b	ENSGT00940000154535.C	ENSGT00940000162394	ENSGT00940000159148	ENSGT00940000161852.y.b
Galloanserae	ANCESTRAL SPECIES	85																ENSGT00390000013443.c #22	ENSGT00940000159869 #23	ENSGT00940000160550 #24	ENSGT00940000161143 #25
Phasianidae	ANCESTRAL SPECIES	61																ENSGT00390000013443.c #22	ENSGT00940000159869 #23	ENSGT00940000160550 #24	ENSGT00940000161143 #25
Phasianidae_b	ANCESTRAL SPECIES	46	ENSGT00940000160312	ENSGT00390000003420.a.a	ENSGT00530000063777.a.a.b	ENSGT00530000063777.a.a.a	ENSGT00940000156787.v	ENSGT00940000161423	ENSGT00940000158718	ENSGT00940000155021	ENSGT00950000183036.b	ENSGT00940000159130	ENSGT01030000234635.a.a.a.b	ENSGT00940000158035	ENSGT00940000154063.C.a.b	ENSGT00940000159125	ENSGT00940000153846.a.b	ENSGT00390000013443.c #22	ENSGT00940000159869 #23	ENSGT00940000160550 #24	ENSGT00940000161143 #25
Chicken	MODERN SPECIES	23	RASAL3 (ENSGALG00010003815)	PGLYRP2 (ENSGALG00010003811)	CYP4F11 (ENSGALG00010003634)	MCOLN1 (ENSGALG00010003627)	PNPLA6 (ENSGALG00010003585)	SYDE1 (ENSGALG00010003479)	ENSGALG00010003476	ILVBL (ENSGALG00010003468)	C3 (ENSGALG00010003164)	ENSGALG00010003158	VAV1 (ENSGALG00010003064)	ENSGALG00010003774	EVI5L (ENSGALG00010003762)	ENSGALG00010003724	TRAPPC5 (ENSGALG00010003680)	CDC37 (ENSGALG00010002472) #22	ENSGALG00010002450	TYK2 (ENSGALG00010002443) #23	RAVER1 (ENSGALG00010002432) #24	FDX2 (ENSGALG00010002425) #25
Neognathae_b	ANCESTRAL SPECIES	36	ENSGT00940000160377	ENSGT00940000158445 #7	ENSGT00940000155764.C #8	ENSGT00530000063679.B #9	ENSGT00940000163421	ENSGT00940000156719 #11	ENSGT00980000198857	ENSGT00940000158178 #13	ENSGT00940000159089 #14	ENSGT00390000005605 #16	ENSGT00530000063000.a.a.b #17	ENSGT01050000244887.A.a.a.a #18	ENSGT00940000159543 #19	ENSGT00390000005584	ENSGT00940000159788.b.e.a #21	ENSGT00390000013443.c #22	ENSGT00940000159869 #23	ENSGT00940000160550 #24	ENSGT00940000161143 #25	ENSGT00940000159005.p	ENSGT00390000014512 #30	ENSGT01050000244887.A.a.a.b #31	ENSGT00390000005100 #33	ENSGT00510000047802 #34	ENSGT00530000064158.k #35	ENSGT01030000234518.C.a.a	ENSGT00530000064158.l #35	ENSGT00940000155412.b	ENSGT00940000154535.C	ENSGT00940000162394	ENSGT00940000159148
Neognathae_c	ANCESTRAL SPECIES	38	ENSGT00940000160377	ENSGT00940000158445 #7	ENSGT00940000155764.C #8	ENSGT00530000063679.B #9	ENSGT00940000163421	ENSGT00940000156719 #11	ENSGT00980000198857	ENSGT00940000158178 #13	ENSGT00940000159089 #14	ENSGT00390000005605 #16	ENSGT00530000063000.a.a.b #17	ENSGT01050000244887.A.a.a.a #18	ENSGT00940000159543 #19	ENSGT00960000192617	ENSGT00940000159788.b.e.a #21	ENSGT00390000013443.c #22	ENSGT00940000159869 #23	ENSGT00940000160550 #24	ENSGT00940000161143 #25	ENSGT00940000175590	ENSGT00390000014512 #30	ENSGT01050000244887.A.a.a.b #31	ENSGT00390000005100 #33	ENSGT00510000047802 #34	ENSGT01030000234518.C.a.a	ENSGT00530000064158.l #35	ENSGT00940000155412.b	ENSGT00940000154535.C	ENSGT00940000162394	ENSGT00940000159148	ENSGT00940000161852.y.b
Golden eagle	MODERN SPECIES	2				LDLR (ENSACCG00020002258)	SMARCA4 (ENSACCG00020002171)	TIMM29 (ENSACCG00020002106)	YIPF2 (ENSACCG00020002092)	CARM1 (ENSACCG00020002063)	TMED1 (ENSACCG00020002018) #7	DNM2 (ENSACCG00020001955) #8	ENSACCG00020001872	ENSACCG00020001768 #11	ENSACCG00020001665	ENSACCG00020001647 #13	ENSACCG00020001620 #21	CDC37 (ENSACCG00020001599) #22	TYK2 (ENSACCG00020001554) #23	RAVER1 (ENSACCG00020001496) #24	FDX2 (ENSACCG00020001473) #25	ENSACCG00020001454	ENSACCG00020001437	ENSACCG00020001398	ENSACCG00020001376	S1PR2 (ENSACCG00020001362) #31	MRPL4 (ENSACCG00020001344) #30	DNMT1 (ENSACCG00020001053) #33	EIF3G (ENSACCG00020000893) #34	P2RY11 (ENSACCG00020000867)	PPAN (ENSACCG00020000838) #35	RDH8 (ENSACCG00020000817)	ENSACCG00020000752
Kakapo	MODERN SPECIES	73	UBL5 (ENSSHBG00005016718)	PIN1 (ENSSHBG00005016716)	ENSSHBG00005016711	OLFM2 (ENSSHBG00005016706)	ENSSHBG00005016696	ENSSHBG00005016691	RDH8 (ENSSHBG00005016683)	PPAN (ENSSHBG00005016676) #35	EIF3G (ENSSHBG00005016670) #34	DNMT1 (ENSSHBG00005014896) #33	S1PR2 (ENSSHBG00005014775) #31	MRPL4 (ENSSHBG00005014769) #30	S1PR5 (ENSSHBG00005014763) #18	KEAP1 (ENSSHBG00005014757) #19	PDE4A (ENSSHBG00005014607) #21	CDC37 (ENSSHBG00005014562) #22
Passeriformes	ANCESTRAL SPECIES	94																ENSGT00390000013443.c #22	ENSGT00940000159869 #23	ENSGT00940000160550 #24	ENSGT00940000161143 #25	ENSGT00940000159005.p
Passeriformes_d	ANCESTRAL SPECIES	89																ENSGT00390000013443.c #22	ENSGT00940000159869 #23	ENSGT00940000160550 #24	ENSGT00940000161143 #25	ENSGT00940000159005.p
Passeriformes_g	ANCESTRAL SPECIES	99																ENSGT00390000013443.c #22	ENSGT00940000159869 #23	ENSGT00940000160550 #24	ENSGT00940000161143 #25	ENSGT00940000159005.p
Passeroidea	ANCESTRAL SPECIES	104																ENSGT00390000013443.c #22	ENSGT00940000159869 #23	ENSGT00940000160550 #24	ENSGT00940000161143 #25	ENSGT00940000159005.p
Zebra finch	MODERN SPECIES	24	ENSTGUG00000023396	ENSTGUG00000026111	CALR (ENSTGUG00000014982)	ENSTGUG00000028645	ENSTGUG00000019678	ENSTGUG00000020610	NFIX (ENSTGUG00000020664)	ACP5 (ENSTGUG00000021534)	ELOF1 (ENSTGUG00000024494)	CNN1 (ENSTGUG00000020817)	ENSTGUG00000029357	ENSTGUG00000021484	ENSTGUG00000026577	ENSTGUG00000028230	ELAVL3 (ENSTGUG00000021529)	CDC37 (ENSTGUG00000022693) #22	TYK2 (ENSTGUG00000024257) #23	ENSTGUG00000019445	RAVER1 (ENSTGUG00000020121) #24	FDX2 (ENSTGUG00000022780) #25	ENSTGUG00000019185	PBX4 (ENSTGUG00000026483)	ENSTGUG00000029740	LPAR2 (ENSTGUG00000028905)	NXNL1 (ENSTGUG00000028490)	PGLS (ENSTGUG00000028160)	ENSTGUG00000021012	COLGALT1 (ENSTGUG00000022815)	ENSTGUG00000024369	ENSTGUG00000025195	WIZ (ENSTGUG00000023519)
Common canary	MODERN SPECIES	256															ENSSCAG00000006828	CDC37 (ENSSCAG00000006833) #22	TYK2 (ENSSCAG00000006837) #23	RAVER1 (ENSSCAG00000006840) #24	ENSSCAG00000006844
Medium ground finch	MODERN SPECIES	560																CDC37 (ENSGFOG00000011753) #22	TYK2 (ENSGFOG00000011764) #23	ENSGFOG00000011777
African ostrich	MODERN SPECIES	148																CDC37 (ENSSCUG00000002460) #22	TYK2 (ENSSCUG00000002464) #23	ENSSCUG00000002469 #24
Lepidosauria	ANCESTRAL SPECIES	44	ENSGT00940000155764.C #8	ENSGT00530000063679.B #9	ENSGT00940000166551	ENSGT00940000163421	ENSGT00940000156719 #11	ENSGT00940000158178 #13	ENSGT00940000159089 #14	ENSGT00940000159801.B #15	ENSGT00390000005605 #16	ENSGT00950000182923.A	ENSGT00530000063000.a.a.b #17	ENSGT01050000244887.A.a.a.a #18	ENSGT00940000159543 #19	ENSGT00390000005584	ENSGT00940000159788.b #21	ENSGT00390000013443.c #22	ENSGT00940000159869 #23	ENSGT00940000160550 #24	ENSGT00940000161143 #25	ENSGT00470000042444 #26	ENSGT00940000159005	ENSGT00390000014512 #30	ENSGT01050000244887.A.a.a.b #31	ENSGT00390000005100 #33	ENSGT00510000047802 #34	ENSGT01030000234518.C.a.a	ENSGT00530000064158 #35	ENSGT00390000000950.c.a	ENSGT00530000063808.a	ENSGT00530000063435.a	ENSGT00940000159667
Episquamata	ANCESTRAL SPECIES	6	ENSGT00940000154396.b.a	ENSGT01050000244879.a.b	ENSGT00390000011987	ENSGT00940000162059	ENSGT00390000009595.b	ENSGT00950000183135.A.b	ENSGT00940000162102	ENSGT00390000011740	ENSGT00530000063615.b	ENSGT00940000164108.a	ENSGT00940000164623.C	ENSGT00940000157700	ENSGT00960000192617	ENSGT00940000159543 #19	ENSGT00940000159788.b #21	ENSGT00390000013443.c #22	ENSGT00940000159869 #23	ENSGT00940000160550 #24	ENSGT00940000161143 #25	ENSGT00470000042444 #26	ENSGT00940000159005.k	ENSGT00940000159005.l	ENSGT00390000014512 #30	ENSGT01050000244887.A.a.a.b #31	ENSGT00390000005100 #33	ENSGT00510000047802 #34	ENSGT01030000234518.C.a.a	ENSGT00530000064158 #35	ENSGT00940000158776	ENSGT00390000005065 #37	ENSGT00960000191341
Laterata	ANCESTRAL SPECIES	7	ENSGT01050000244879.a.b	ENSGT00390000011987	ENSGT00940000162059	ENSGT00390000009595.b	ENSGT00950000183135.A.b	ENSGT00940000162102	ENSGT00390000011740	ENSGT00530000063615.b	ENSGT00940000164108.a	ENSGT00940000164623.C	ENSGT00940000157700	ENSGT00960000192617	ENSGT00390000005584	ENSGT00940000159543 #19	ENSGT00940000159788.b #21	ENSGT00390000013443.c #22	ENSGT00940000159869 #23	ENSGT00940000160550 #24	ENSGT00940000161143 #25	ENSGT00470000042444 #26	ENSGT00940000159005.k	ENSGT00940000159005.l	ENSGT00390000014512 #30	ENSGT01050000244887.A.a.a.b #31	ENSGT00390000005100 #33	ENSGT00510000047802 #34	ENSGT01030000234518.C.a.a	ENSGT00530000064158 #35	ENSGT00940000158776	ENSGT00390000005065 #37	ENSGT00960000191341
Common wall lizard	MODERN SPECIES	8	PODNL1 (ENSPMRG00000023893)	CC2D1A (ENSPMRG00000023894)	NANOS3 (ENSPMRG00000023896)	ZSWIM4 (ENSPMRG00000023897)	C19orf53 (ENSPMRG00000023898)	YJU2B (ENSPMRG00000023899)	ENSPMRG00000023900	ENSPMRG00000023901	ENSPMRG00000023902	MAST1 (ENSPMRG00000023904)	SPC24 (ENSPMRG00000023907)	KEAP1 (ENSPMRG00000023908) #19	PDE4A (ENSPMRG00000023910) #21	ENSPMRG00000023913	ENSPMRG00000023914	CDC37 (ENSPMRG00000023916) #22	TYK2 (ENSPMRG00000023918) #23	RAVER1 (ENSPMRG00000018432) #24	FDX2 (ENSPMRG00000018463) #25	ENSPMRG00000018475	OR1F1 (ENSPMRG00000018485)	ENSPMRG00000018491	ENSPMRG00000018495	ENSPMRG00000018499	ENSPMRG00000018507	ENSPMRG00000018519	ENSPMRG00000018521	SPACA3 (ENSPMRG00000018537)	ENSPMRG00000018568	ENSPMRG00000018574	ENSPMRG00000018579
Argentine black and white tegu	MODERN SPECIES	85	PODNL1 (ENSSMRG00000017021)	CC2D1A (ENSSMRG00000016838)	NANOS3 (ENSSMRG00000016836)	ZSWIM4 (ENSSMRG00000016830)	C19orf53 (ENSSMRG00000016829)	YJU2B (ENSSMRG00000016828)	ENSSMRG00000016826	ENSSMRG00000016825	ENSSMRG00000016824	MAST1 (ENSSMRG00000016813)	ENSSMRG00000016809	KEAP1 (ENSSMRG00000016807) #19	PDE4A (ENSSMRG00000016802) #21	ENSSMRG00000016801	ENSSMRG00000016798	CDC37 (ENSSMRG00000016797) #22	TYK2 (ENSSMRG00000016791) #23	RAVER1 (ENSSMRG00000016782) #24	FDX2 (ENSSMRG00000016780) #25	ZGLP1 (ENSSMRG00000016776) #26	ENSSMRG00000016774	ENSSMRG00000016773	ENSSMRG00000016772	MRPL4 (ENSSMRG00000016770) #30	S1PR2 (ENSSMRG00000016767) #31	DNMT1 (ENSSMRG00000016764) #33	EIF3G (ENSSMRG00000016762) #34	ENSSMRG00000016761	ENSSMRG00000016760	PPAN (ENSSMRG00000016758) #35	ENSSMRG00000016753
Toxicofera	ANCESTRAL SPECIES	6	ENSGT00940000154396.b.a	ENSGT01050000244879.a.b	ENSGT00390000011987	ENSGT00940000162059	ENSGT00390000009595.b	ENSGT00950000183135.A.b	ENSGT00940000162102	ENSGT00390000011740	ENSGT00530000063615.b	ENSGT00940000164108.a	ENSGT00940000164623.C	ENSGT00940000157700	ENSGT00960000192617	ENSGT00940000159543 #19	ENSGT00940000159788.b #21	ENSGT00390000013443.c #22	ENSGT00940000159869 #23	ENSGT00940000160550 #24	ENSGT00940000161143 #25	ENSGT00940000159005.k	ENSGT00940000159005.l	ENSGT00390000014512 #30	ENSGT01050000244887.A.a.a.b #31	ENSGT00390000005100 #33	ENSGT00510000047802 #34	ENSGT01030000234518.C.a.a	ENSGT00530000064158 #35	ENSGT00940000158776	ENSGT00390000005065 #37	ENSGT00960000191341	ENSGT00390000000950.c.a
Elapidae	ANCESTRAL SPECIES	21	ENSGT00390000005830	ENSGT00940000154739.A	ENSGT00940000154396.b.a	ENSGT01050000244879.a.b	ENSGT00390000011987	ENSGT00940000162059	ENSGT00390000009595.b	ENSGT00950000183135.A.b	ENSGT00940000162102	ENSGT00390000011740	ENSGT00530000063615.b	ENSGT00940000157700.f	ENSGT00960000192617	ENSGT00940000159543 #19	ENSGT00940000159788.b #21	ENSGT00390000013443.c #22	ENSGT00940000159869.a #23	ENSGT00940000160550 #24	ENSGT00940000161143 #25	ENSGT00940000159005.k	ENSGT00940000159005.l.f	ENSGT00940000159005.l.e	ENSGT00390000014512 #30	ENSGT01050000244887.A.a.a.b #31	ENSGT00390000005100 #33	ENSGT00510000047802 #34	ENSGT01030000234518.C.a.a	ENSGT00530000064158 #35	ENSGT00940000158776	ENSGT00390000005065 #37	ENSGT00960000191341
Indian cobra	MODERN SPECIES	1	RLN3 (ENSNNAG00000019028)	RFX1 (ENSNNAG00000019027)	DCAF15 (ENSNNAG00000019025)	PODNL1 (ENSNNAG00000019023)	CC2D1A (ENSNNAG00000019016)	ZSWIM4 (ENSNNAG00000018999)	C19orf53 (ENSNNAG00000018996)	YJU2B (ENSNNAG00000018993)	ENSNNAG00000018990	ENSNNAG00000018988	ENSNNAG00000018987	ENSNNAG00000018984	ENSNNAG00000018981	KEAP1 (ENSNNAG00000018979) #19	PDE4A (ENSNNAG00000018976) #21	CDC37 (ENSNNAG00000018973) #22	TYK2 (ENSNNAG00000018955) #23	RAVER1 (ENSNNAG00000018925) #24	FDX2 (ENSNNAG00000018922) #25	ENSNNAG00000018919	ENSNNAG00000018916	ENSNNAG00000018908	ENSNNAG00000018898	MRPL4 (ENSNNAG00000018892) #30	S1PR2 (ENSNNAG00000018888) #31	DNMT1 (ENSNNAG00000018882) #33	EIF3G (ENSNNAG00000018878) #34	PPAN (ENSNNAG00000018875) #35	ENSNNAG00000018873	ENSNNAG00000018872	SHFL (ENSNNAG00000018867) #37
Elapidae_a	ANCESTRAL SPECIES	23	ENSGT00940000154739.A	ENSGT00940000154396.b.a	ENSGT01050000244879.a.b	ENSGT00390000011987	ENSGT00940000162059	ENSGT00390000009595.b	ENSGT00950000183135.A.b	ENSGT00940000162102	ENSGT00390000011740	ENSGT00530000063615.b	ENSGT00940000164108.a	ENSGT00940000157700.f	ENSGT00960000192617	ENSGT00940000159543 #19	ENSGT00940000159788.b #21	ENSGT00390000013443.c #22	ENSGT00940000159869.a #23	ENSGT00940000160550 #24	ENSGT00940000161143 #25	ENSGT00940000159005.k	ENSGT00940000159005.l.f.c	ENSGT00940000159005.l.e	ENSGT00390000014512 #30	ENSGT01050000244887.A.a.a.b #31	ENSGT00390000005100 #33	ENSGT00510000047802 #34	ENSGT01030000234518.C.a.a	ENSGT00530000064158 #35	ENSGT00940000158776	ENSGT00390000005065 #37	ENSGT00960000191341
Acanthophiinae	ANCESTRAL SPECIES	23	ENSGT00940000154739.A	ENSGT00940000154396.b.a	ENSGT01050000244879.a.b	ENSGT00390000011987	ENSGT00940000162059	ENSGT00390000009595.b	ENSGT00950000183135.A.b	ENSGT00940000162102	ENSGT00390000011740	ENSGT00530000063615.b	ENSGT00940000164108.a	ENSGT00940000157700.f	ENSGT00960000192617	ENSGT00940000159543 #19	ENSGT00940000159788.b #21	ENSGT00390000013443.c #22	ENSGT00940000159869.a #23	ENSGT00940000160550 #24	ENSGT00940000161143 #25	ENSGT00940000159005.k	ENSGT00940000159005.l.f.c	ENSGT00940000159005.l.e	ENSGT00390000014512 #30	ENSGT01050000244887.A.a.a.b #31	ENSGT00390000005100 #33	ENSGT00510000047802 #34	ENSGT01030000234518.C.a.a	ENSGT00530000064158 #35	ENSGT00940000158776	ENSGT00390000005065 #37	ENSGT00390000000950.c.a
Mainland tiger snake	MODERN SPECIES	480															ENSNSUG00000006094	CDC37 (ENSNSUG00000006092) #22	TYK2 (ENSNSUG00000003024) #23	RAVER1 (ENSNSUG00000003004) #24	FDX2 (ENSNSUG00000002998) #25	ENSNSUG00000002928
Eastern brown snake	MODERN SPECIES	52	RLN3 (ENSPTXG00000003968)	RFX1 (ENSPTXG00000004025)	DCAF15 (ENSPTXG00000004026)	PODNL1 (ENSPTXG00000004027)	CC2D1A (ENSPTXG00000004028)	NANOS3 (ENSPTXG00000004029)	ZSWIM4 (ENSPTXG00000004034)	C19orf53 (ENSPTXG00000004048)	YJU2B (ENSPTXG00000004050)	ENSPTXG00000004054	ENSPTXG00000004057	MAST1 (ENSPTXG00000004059)	SPC24 (ENSPTXG00000004063)	KEAP1 (ENSPTXG00000004065) #19	PDE4A (ENSPTXG00000004066) #21	CDC37 (ENSPTXG00000004068) #22	TYK2 (ENSPTXG00000004070) #23	RAVER1 (ENSPTXG00000004076) #24	FDX2 (ENSPTXG00000004078) #25	ENSPTXG00000004087	ENSPTXG00000004825	ENSPTXG00000004827	MRPL4 (ENSPTXG00000004828) #30	S1PR2 (ENSPTXG00000004829) #31	DNMT1 (ENSPTXG00000004830) #33	EIF3G (ENSPTXG00000004832) #34	P2RY11 (ENSPTXG00000004833)	PPAN (ENSPTXG00000004835) #35	KIF17 (ENSPTXG00000004838)	ENSPTXG00000004873	SHFL (ENSPTXG00000004878) #37
Blue-lipped sea krait	MODERN SPECIES	8494																CDC37 (ENSLLTG00000010379) #22
Lizard	MODERN SPECIES	1	YJU2B (ENSACAG00000009171)	ENSACAG00000009140	ENSACAG00000040060	ENSACAG00000009042	ENSACAG00000043740	ENSACAG00000042755	ENSACAG00000043242	spc24 (ENSACAG00000045404)	ENSACAG00000008991 #19	PDE4A (ENSACAG00000008734) #21	ENSACAG00000045329	ENSACAG00000042229	ENSACAG00000036952	ENSACAG00000040707	ENSACAG00000040575	CDC37 (ENSACAG00000008650) #22	TYK2 (ENSACAG00000008421) #23	RAVER1 (ENSACAG00000008386) #24	ENSACAG00000039644 #25	KLF1 (ENSACAG00000008367)	ENSACAG00000008310	SYCE2 (ENSACAG00000008304)	ENSACAG00000039836	CHD1 (ENSACAG00000011210)	RGMB (ENSACAG00000011827)	ENSACAG00000039942	ENSACAG00000037828	RIOK2 (ENSACAG00000011858)	LIX1 (ENSACAG00000011917)	LNPEP (ENSACAG00000012000)	ERAP1 (ENSACAG00000012299)
tuatara	MODERN SPECIES	1327	ENSSPUG00000002943	CDCA5 (ENSSPUG00000002930)	ENSSPUG00000002898	SNX15 (ENSSPUG00000002865)	ARL2 (ENSSPUG00000002850)	ENSSPUG00000002569	SLC44A2 (ENSSPUG00000002524) #13	CDKN2D (ENSSPUG00000002515) #15	ENSSPUG00000002511 #14	KRI1 (ENSSPUG00000002483) #16	ATG4D (ENSSPUG00000002362) #17	S1PR5 (ENSSPUG00000002333) #18	KEAP1 (ENSSPUG00000002322) #19	ENSSPUG00000002307	PDE4A (ENSSPUG00000002280) #21	CDC37 (ENSSPUG00000002268) #22	ENSSPUG00000002258 #23	FDX2 (ENSSPUG00000002158) #25	ENSSPUG00000002138	ENSSPUG00000002134
Anura	ANCESTRAL SPECIES	67	ENSGT00530000063679.B #9	ENSGT00940000166551	ENSGT00940000163421	ENSGT00940000155117.e.g	ENSGT00940000156719 #11	ENSGT00900000143551	ENSGT00940000158178 #13	ENSGT00940000159089 #14	ENSGT00940000159801.B #15	ENSGT00390000005605 #16	ENSGT00530000063000.a.a.b #17	ENSGT01050000244887.A.a.a.a #18	ENSGT00940000159543 #19	ENSGT00390000005584	ENSGT00940000159788.b #21	ENSGT00390000013443.c #22	ENSGT00940000159869 #23	ENSGT00940000160550 #24	ENSGT00470000042444 #26	ENSGT00940000159005	ENSGT00390000014512 #30	ENSGT01050000244887.A.a.a.b #31	ENSGT00390000005100 #33	ENSGT00510000047802 #34	ENSGT01030000234518.C.a.a	ENSGT00530000064158 #35	ENSGT00940000154535.C	ENSGT00940000155412.b	ENSGT00390000005065 #37	ENSGT00940000160969 #36	ENSGT00640000091578
Frog	MODERN SPECIES	3	ENSXETG00000011652	ENSXETG00000042323	ENSXETG00000037381	ilf3 (ENSXETG00000011651) #11	ENSXETG00000041451	slc44a2 (ENSXETG00000011650) #13	ap1m2 (ENSXETG00000027684) #14	ENSXETG00000049143	cdkn2d (ENSXETG00000011649) #15	kri1 (ENSXETG00000011646) #16	atg4d (ENSXETG00000011644) #17	s1pr5 (ENSXETG00000039621) #18	keap1 (ENSXETG00000011638) #19	spc24 (ENSXETG00000027687)	pde4a (ENSXETG00000011637) #21	cdc37 (ENSXETG00000011625) #22	tyk2 (ENSXETG00000011623) #23	raver1 (ENSXETG00000011622) #24	zglp1 (ENSXETG00000039819) #26	icam5 (ENSXETG00000027690)	ENSXETG00000034765	ENSXETG00000042034	ENSXETG00000022064	ENSXETG00000035655	ENSXETG00000036367	mrpl4 (ENSXETG00000022060) #30	s1pr2 (ENSXETG00000041702) #31	dnmt1 (ENSXETG00000022035) #33	eif3g (ENSXETG00000027008) #34	p2ry11 (ENSXETG00000022059)	ENSXETG00000042723
Leishan spiny toad	MODERN SPECIES	6	ENSLLEG00000003952	ENSLLEG00000003959	ILF3 (ENSLLEG00000003992) #11	ENSLLEG00000004048 #13	ENSLLEG00000004081	AP1M2 (ENSLLEG00000004092) #14	CDKN2D (ENSLLEG00000004106) #15	KRI1 (ENSLLEG00000004114) #16	ATG4D (ENSLLEG00000004132) #17	S1PR5 (ENSLLEG00000004135) #18	ENSLLEG00000004138	KEAP1 (ENSLLEG00000004140) #19	ENSLLEG00000004143	ENSLLEG00000004149	PDE4A (ENSLLEG00000004157) #21	CDC37 (ENSLLEG00000004179) #22	TYK2 (ENSLLEG00000004188) #23	RAVER1 (ENSLLEG00000004201) #24	ENSLLEG00000004215 #26	ENSLLEG00000004228	ENSLLEG00000004236	ENSLLEG00000004246	S1PR2 (ENSLLEG00000004255) #31	ENSLLEG00000004259	ENSLLEG00000004260	DNMT1 (ENSLLEG00000004264) #33	ENSLLEG00000004274 #34	P2RY11 (ENSLLEG00000004282)	PPAN (ENSLLEG00000004286) #35	ENSLLEG00000004314	ENSLLEG00000004357
Coelacanth	MODERN SPECIES	1935													ENSLACG00000007096	pgp (ENSLACG00000007640)	ENSLACG00000007768	CDC37 (ENSLACG00000008710) #22
Actinopterygii	ANCESTRAL SPECIES	1184																ENSGT00390000013443.c #22	ENSGT00940000170960
Neopterygii	ANCESTRAL SPECIES	970																ENSGT00390000013443.c #22	ENSGT00940000170960
Osteoglossocephalai	DUPLICATION
Osteoglossocephalai	ANCESTRAL SPECIES	97	ENSGT00940000153391.c.a	ENSGT00940000163377.a.b.b	ENSGT00390000005065 #37	ENSGT00940000165414	ENSGT00940000160234	ENSGT00940000155412.a.a.a	ENSGT01000000214708	ENSGT00940000155091.fb	ENSGT00530000064158 #35	ENSGT01030000234518.C.a.a	ENSGT00510000047802 #34	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #31	ENSGT00940000159005.c.a.a	ENSGT00940000159005.c.a.b	ENSGT00390000013443.c.i #22	ENSGT00940000159869 #23	ENSGT00940000160550 #24	ENSGT00940000175510	ENSGT00940000159788.a.a ##21	ENSGT00510000047770.c.a	ENSGT00940000160389	ENSGT00940000159313	ENSGT00940000161012
Clupeocephala	ANCESTRAL SPECIES	6	ENSGT00940000165414	ENSGT00940000160234.b	ENSGT00940000155412.a.a.a	ENSGT00940000154535.A	ENSGT00940000159148.a	ENSGT00950000183047.c.a.a	ENSGT00940000159005.c.a.a.f	ENSGT00940000160969 #36	ENSGT00530000064158 #35	ENSGT01030000234518.C.a.a	ENSGT00510000047802 #34	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #31	ENSGT00940000159005.c.a.a.e.b	ENSGT00940000159005.c.a.b	ENSGT00390000013443.c.i #22	ENSGT00940000159869 #23	ENSGT00940000160550 #24	ENSGT00940000175510	ENSGT00940000159788.a.a ##21	ENSGT00510000047770.c.a	ENSGT00940000160389	ENSGT00770000121797	ENSGT00940000159313	ENSGT00940000161012	ENSGT00940000163288.a.b.b.b.a.a.a.b.a	ENSGT00940000157809.j.a.f	ENSGT00940000163288.a.b.b.b.a.a.a.a	ENSGT00940000157809.j.a.e.a	ENSGT00940000163288.a.b.b.a	ENSGT00940000157809.j.b
Euteleosteomorpha	ANCESTRAL SPECIES		ENSGT00940000160234.a.b	ENSGT00940000155412.a.a.a	ENSGT01000000214708.a.a	ENSGT00940000154535.A	ENSGT00940000159148.a	ENSGT00950000183047.c.a.a	ENSGT00940000159005.c.a.a.e.b	ENSGT00940000160969 #36	ENSGT00530000064158 #35	ENSGT01030000234518.C.a.a	ENSGT00510000047802 #34	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #31	ENSGT00940000159005.c.a.a.e.a	ENSGT00940000159005.c.a.b	ENSGT00390000013443.c.i #22	ENSGT00940000159869 #23	ENSGT00940000160550 #24	ENSGT00940000175510	ENSGT00940000159788.a.a ##21	ENSGT00510000047770.c.a	ENSGT00940000160389	ENSGT00940000159313	ENSGT00770000121797	ENSGT00940000161012	ENSGT00940000179892	ENSGT00940000157809.j.a.e.a	ENSGT00940000163288.a.b.b.b.a.a.a.b.a	ENSGT00940000157809.j.a.f	ENSGT00940000163288.a.b.b.b.a.a.a.a	ENSGT00390000010849
Acanthomorphata	ANCESTRAL SPECIES	2	ENSGT01000000214708.a.a	ENSGT00940000154535.A	ENSGT00940000159148.a	ENSGT00950000183047.c.a.a	ENSGT00940000159005.c.a.a.e.b.a	ENSGT00940000160969 #36	ENSGT00530000064158 #35	ENSGT01030000234518.C.a.a	ENSGT00510000047802 #34	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #31	ENSGT00940000159005.c.a.a.e.a	ENSGT00940000155091.fb	ENSGT00940000159005.c.a.a.e.b.b	ENSGT00940000159005.c.a.b	ENSGT00390000013443.c.i #22	ENSGT00940000159869 #23	ENSGT00940000160550 #24	ENSGT00940000175510	ENSGT00940000159788.a.a ##21	ENSGT00510000047770.c.a	ENSGT00940000160389	ENSGT00770000121797	ENSGT00940000159313	ENSGT00940000161012	ENSGT00940000163288.a.b.b.b.a.a.a.b.a	ENSGT00940000157809.j.a.f	ENSGT00940000163288.a.b.b.b.a.a.a.a	ENSGT00940000157809.j.a.e.a	ENSGT00390000010849	ENSGT00940000157809.j.b
Euacanthomorphacea	ANCESTRAL SPECIES	5	ENSGT00940000159148.a	ENSGT00950000183047.c.a.a	ENSGT00940000159005.c.a.a.e.b.a	ENSGT00940000155091.fb	ENSGT00940000160969 #36	ENSGT00530000064158 #35	ENSGT01030000234518.C.a.a	ENSGT00510000047802 #34	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #31	ENSGT00940000159005.c.a.a.e.a	ENSGT01030000235614	ENSGT00940000159005.c.a.a.e.b.b	ENSGT00940000159005.c.a.b	ENSGT00390000012647	ENSGT00390000013443.c.i #22	ENSGT00940000159869 #23	ENSGT00940000160550 #24	ENSGT00940000175510	ENSGT00940000159788.a.a ##21	ENSGT00510000047770.c.a	ENSGT00940000160389	ENSGT00770000121797	ENSGT00940000159313	ENSGT00940000161012	ENSGT00940000163288.a.b.b.b.a.a.a.b.a	ENSGT00940000157809.j.a.f	ENSGT00940000163288.a.b.b.b.a.a.a.a	ENSGT00940000157809.j.a.e.a	ENSGT00390000010849	ENSGT00940000157809.j.b
Percomorphaceae	ANCESTRAL SPECIES	3	ENSGT00940000159148.a	ENSGT00950000183047.c.a.a	ENSGT00940000159005.c.a.a.e.b.a	ENSGT00940000155091.fb	ENSGT00940000160969 #36	ENSGT00530000064158 #35	ENSGT01030000234518.C.a.a	ENSGT00510000047802 #34	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #31	ENSGT00940000159005.c.a.a.e.a	ENSGT01030000235614	ENSGT00940000159005.c.a.a.e.b.b	ENSGT00940000159005.c.a.b	ENSGT00390000012647	ENSGT00390000013443.c.i #22	ENSGT00940000159869 #23	ENSGT00940000160550 #24	ENSGT00940000175510	ENSGT00940000159788.a.a ##21	ENSGT00510000047770.c.a	ENSGT00940000160389	ENSGT00940000159313	ENSGT00770000121797	ENSGT00940000161012	ENSGT00940000163288.a.b.b.b.a.a.a.a	ENSGT00940000178476	ENSGT00940000157809.j.a.e.a	ENSGT00390000010849	ENSGT00940000157809.j.b	ENSGT00390000015916
Percomorphaceae_B	ANCESTRAL SPECIES	2	ENSGT00940000154535.A	ENSGT00940000159148.a	ENSGT00950000183047.c.a.a	ENSGT00940000159005.c.a.a.e.b.a	ENSGT00940000160969 #36	ENSGT00530000064158 #35	ENSGT01030000234518.C.a.a	ENSGT00510000047802 #34	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #31	ENSGT00940000159005.c.a.a.e.a	ENSGT01030000235614	ENSGT00940000159005.c.a.a.e.b.b	ENSGT00940000159005.c.a.b	ENSGT01010000222549	ENSGT00390000013443.c.i #22	ENSGT00940000159869 #23	ENSGT00940000160550 #24	ENSGT00940000175510	ENSGT00940000159788.a.a ##21	ENSGT00510000047770.c.a	ENSGT00940000160389	ENSGT00770000121797	ENSGT00940000159313	ENSGT00940000161012	ENSGT00940000163288.a.b.b.b.a.a.a.a.s.b	ENSGT00940000157809.j.a.e.a	ENSGT00940000163288.a.b.b.b.a.a.a.a.s.a.b	ENSGT00940000163288.a.a	ENSGT00390000010849	ENSGT00940000157809.j.b
Ovalentaria	ANCESTRAL SPECIES	1	ENSGT00940000154535.A	ENSGT00940000159148.a	ENSGT00950000183047.c.a.a	ENSGT00940000159005.c.a.a.e.b.a	ENSGT00940000160969 #36	ENSGT00530000064158 #35	ENSGT01030000234518.C.a.a	ENSGT00510000047802 #34	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #31	ENSGT00940000159005.c.a.a.e.a	ENSGT01030000235614	ENSGT00940000159005.c.a.a.e.b.b	ENSGT00940000159005.c.a.b	ENSGT01010000222549	ENSGT00390000013443.c.i #22	ENSGT00940000159869 #23	ENSGT00940000160550 #24	ENSGT00940000175510	ENSGT00940000159788.a.a ##21	ENSGT00510000047770.c.a	ENSGT00940000160389	ENSGT00770000121797	ENSGT00940000159313	ENSGT00940000161012	ENSGT00940000163288.a.b.b.b.a.a.a.a.s.a.a.b	ENSGT00940000177242.A	ENSGT00940000163288.a.b.b.b.a.a.a.a.s.a.b	ENSGT00940000157809.j.a.e.a	ENSGT00940000163288.a.b.b.b.a.a.a.a.s.b	ENSGT00940000163288.a.a
Ovalentaria_B	ANCESTRAL SPECIES		ENSGT01000000214708.a.a	ENSGT00940000154535.A	ENSGT00940000159148.a	ENSGT00950000183047.c.a.a	ENSGT00940000159005.c.a.a.e.b.a	ENSGT00940000160969 #36	ENSGT00530000064158 #35	ENSGT01030000234518.C.a.a	ENSGT00510000047802 #34	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #31	ENSGT00940000159005.c.a.a.e.a	ENSGT00940000159005.c.a.a.e.b.b	ENSGT00940000159005.c.a.b	ENSGT01010000222549	ENSGT00390000013443.c.i #22	ENSGT00940000159869 #23	ENSGT00940000160550 #24	ENSGT00940000175510	ENSGT00940000159788.a.a ##21	ENSGT00510000047770.c.a	ENSGT00940000160389	ENSGT00940000159313	ENSGT00940000161012	ENSGT00940000170883	ENSGT00390000015916	ENSGT00390000009825	ENSGT00940000156278	ENSGT00390000015579.a.a.b	ENSGT00390000009925.a	ENSGT00940000157696
Pomacentridae	ANCESTRAL SPECIES	38	ENSGT00940000155412.a.a.a	ENSGT00940000154535.A	ENSGT00940000159148.a	ENSGT00950000183047.c.a.a	ENSGT00940000159005.c.a.a.e.b.a	ENSGT00940000160969 #36	ENSGT00530000064158 #35	ENSGT01030000234518.C.a.a	ENSGT00510000047802 #34	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #31	ENSGT00940000159005.c.a.a.e.a	ENSGT00940000159005.c.a.a.e.b.b	ENSGT00940000159005.c.a.b	ENSGT01010000222549	ENSGT00390000013443.c.i #22	ENSGT00940000159869 #23	ENSGT00940000160550 #24	ENSGT00940000175510	ENSGT00940000159788.a.a ##21	ENSGT00510000047770.c.a	ENSGT00940000160389	ENSGT00940000159313	ENSGT00940000161012	ENSGT00940000163288.a.b.b.b.a.a.a.a.s.a.b.b	ENSGT00940000157809.j.a.e.a	ENSGT00940000163288.a.b.b.b.a.a.a.a.s.a.a.b	ENSGT00940000177242.A	ENSGT00940000163288.a.b.b.b.a.a.a.a.s.a.b.a	ENSGT00940000170883	ENSGT00390000015916
Pomacentridae_A	ANCESTRAL SPECIES	30	ENSGT00940000155412.a.a.a	ENSGT00940000154535.A	ENSGT00940000159148.a	ENSGT00950000183047.c.a.a	ENSGT00940000159005.c.a.a.e.b.a	ENSGT00940000160969 #36	ENSGT00530000064158 #35	ENSGT01030000234518.C.a.a	ENSGT00510000047802 #34	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #31	ENSGT00940000159005.c.a.a.e.a.c	ENSGT00940000159005.c.a.a.e.b.b	ENSGT00940000159005.c.a.b	ENSGT01010000222549	ENSGT00390000013443.c.i #22	ENSGT00940000159869 #23	ENSGT00940000160550 #24	ENSGT00940000175510	ENSGT00940000159788.a.a ##21	ENSGT00510000047770.c.a	ENSGT00940000160389	ENSGT00940000159313	ENSGT00940000161012	ENSGT00940000163288.a.b.b.b.a.a.a.a.s.a.b.b	ENSGT00940000157809.j.a.e.a	ENSGT00940000163288.a.b.b.b.a.a.a.a.s.a.b.a	ENSGT00940000170883	ENSGT00390000015916	ENSGT00390000009825	ENSGT00940000156278
Amphiprion	ANCESTRAL SPECIES	23	ENSGT00940000155412.a.a.a	ENSGT00940000154535.A	ENSGT00940000159148.a	ENSGT00950000183047.c.a.a	ENSGT00940000159005.c.a.a.e.b.a	ENSGT00940000160969 #36	ENSGT00530000064158 #35	ENSGT01030000234518.C.a.a	ENSGT00510000047802 #34	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #31	ENSGT00940000159005.c.a.a.e.a.c	ENSGT00940000159005.c.a.a.e.b.b	ENSGT00940000159005.c.a.b	ENSGT01010000222549	ENSGT00390000013443.c.i #22	ENSGT00940000159869 #23	ENSGT00940000160550 #24	ENSGT00940000175510	ENSGT00940000159788.a.a ##21	ENSGT00510000047770.c.a	ENSGT00940000160389	ENSGT00940000159313	ENSGT00940000161012	ENSGT00940000163288.a.b.b.b.a.a.a.a.s.a.b.b	ENSGT00940000157809.j.a.e.a	ENSGT00940000163288.a.b.b.b.a.a.a.a.s.a.b.a	ENSGT00940000170883	ENSGT00390000015916	ENSGT00390000009825	ENSGT00940000156278
Orange clownfish	MODERN SPECIES	5	rdh8a (ENSAPEG00000010052)	col5a3a (ENSAPEG00000010092)	olfm2a (ENSAPEG00000010307)	trip10a (ENSAPEG00000010345)	ENSAPEG00000010361	angptl6 (ENSAPEG00000010369) #36	ppan (ENSAPEG00000010382) #35	p2ry11 (ENSAPEG00000010439)	eif3g (ENSAPEG00000010475) #34	dnmt1 (ENSAPEG00000010505) #33	s1pr2 (ENSAPEG00000010685) #31	ENSAPEG00000010691	ENSAPEG00000010703	ENSAPEG00000010711	ENSAPEG00000010719	CDC37 (ENSAPEG00000010729) #22	TYK2 (ENSAPEG00000010745) #23	raver1 (ENSAPEG00000010854) #24	ENSAPEG00000011074	PDE4A (ENSAPEG00000011085) ##21	prkcsh (ENSAPEG00000011112)	elavl3 (ENSAPEG00000011145)	DOCK6 (ENSAPEG00000011202)	kank2 (ENSAPEG00000011369)	ENSAPEG00000011374	HBE1 (ENSAPEG00000011379)	ENSAPEG00000011387	HBE1 (ENSAPEG00000011396)	ENSAPEG00000011419	ENSAPEG00000011428	nprl3 (ENSAPEG00000011447)
Clown anemonefish	MODERN SPECIES	1448	ENSAOCG00000005599	ENSAOCG00000005581	olfm2a (ENSAOCG00000005527)	trip10a (ENSAOCG00000005503)	ENSAOCG00000005442	angptl6 (ENSAOCG00000005432) #36	ppan (ENSAOCG00000005416) #35	p2ry11 (ENSAOCG00000005394)	eif3g (ENSAOCG00000005376) #34	dnmt1 (ENSAOCG00000005339) #33	s1pr2 (ENSAOCG00000000221) #31	ENSAOCG00000005225	ENSAOCG00000005216	ENSAOCG00000005210	ENSAOCG00000005204	CDC37 (ENSAOCG00000005190) #22	TYK2 (ENSAOCG00000000216) #23	raver1 (ENSAOCG00000005128) #24	ENSAOCG00000005117	PDE4A (ENSAOCG00000005111) ##21	prkcsh (ENSAOCG00000005076)	elavl3 (ENSAOCG00000005054)	DOCK6 (ENSAOCG00000005014)	kank2 (ENSAOCG00000004968)	ENSAOCG00000004951	HBE1 (ENSAOCG00000002095)	ENSAOCG00000004495	HBE1 (ENSAOCG00000004457)	HBE1 (ENSAOCG00000004104)	ENSAOCG00000004066	nprl3 (ENSAOCG00000003850)
Spiny chromis	MODERN SPECIES	765												ENSAPOG00000017089	ENSAPOG00000017098	ENSAPOG00000017108	ENSAPOG00000017120	CDC37 (ENSAPOG00000017127) #22	TYK2 (ENSAPOG00000017242) #23	raver1 (ENSAPOG00000017267) #24	prkcsh (ENSAPOG00000017529)	elavl3 (ENSAPOG00000017565)	DOCK6 (ENSAPOG00000017778)	kank2 (ENSAPOG00000000488)	ENSAPOG00000017960	ENSAPOG00000018122	hbbe1.2 (ENSAPOG00000018849)	ENSAPOG00000018880	nprl3 (ENSAPOG00000018946)	mpg (ENSAPOG00000018885)	rhbdf1a (ENSAPOG00000019063)	aanat2 (ENSAPOG00000019092)	mgrn1b (ENSAPOG00000019110)
Bicolor damselfish	MODERN SPECIES	533	rdh8a (ENSSPAG00000022772)	col5a3a (ENSSPAG00000022776)	olfm2a (ENSSPAG00000022814)	trip10a (ENSSPAG00000022830)	ENSSPAG00000022856	angptl6 (ENSSPAG00000022867) #36	ppan (ENSSPAG00000000160) #35	p2ry11 (ENSSPAG00000000205)	eif3g (ENSSPAG00000000227) #34	dnmt1 (ENSSPAG00000000468) #33	s1pr2 (ENSSPAG00000000493) #31	ENSSPAG00000000516	ENSSPAG00000000538	ENSSPAG00000000546	ENSSPAG00000000552	CDC37 (ENSSPAG00000000569) #22	TYK2 (ENSSPAG00000000577) #23	raver1 (ENSSPAG00000000688) #24	ENSSPAG00000000901	PDE4A (ENSSPAG00000000913) ##21	prkcsh (ENSSPAG00000000970)	elavl3 (ENSSPAG00000000990)	DOCK6 (ENSSPAG00000001041)	kank2 (ENSSPAG00000001246)	hbbe1.3 (ENSSPAG00000001278)	ENSSPAG00000001286
Cichlidae	ANCESTRAL SPECIES	16	ENSGT01000000214708.a.a	ENSGT00940000154535.A	ENSGT00940000159148.a	ENSGT00950000183047.c.a.a	ENSGT00940000159005.c.a.a.e.b.a	ENSGT00940000155091.fb	ENSGT00530000064158 #35	ENSGT01030000234518.C.a.a	ENSGT00510000047802 #34	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #31	ENSGT00940000159005.c.a.a.e.a	ENSGT00940000159005.c.a.a.e.b.b	ENSGT00940000159005.c.a.b	ENSGT01010000222549	ENSGT00390000013443.c.i #22	ENSGT00940000159869 #23	ENSGT00940000160550 #24	ENSGT00940000175510	ENSGT00940000159788.a.a ##21	ENSGT00510000047770.c.a	ENSGT00940000160389	ENSGT00940000159313	ENSGT00940000161012	ENSGT00940000157809.j.a.e.a	ENSGT00940000163288.a.b.b.b.a.a.a.a.t.c	ENSGT00940000178476	ENSGT00940000177242.A	ENSGT00940000163288.a.b.b.b.a.a.a.a.t.d	ENSGT00940000163288.a.a	ENSGT00940000157809.j.b.u
Pseudocrenilabrinae	ANCESTRAL SPECIES	1	ENSGT00940000159005.c.a.a.e.b.a.f	ENSGT00940000159005.c.a.a.e.b.a.e.a	ENSGT00940000159005.c.a.a.e.b.a.e.b	ENSGT00940000155091.fb	ENSGT00530000064158 #35	ENSGT01030000234518.C.a.a	ENSGT00510000047802 #34	ENSGT00940000159005.c.a.a.e.b.b.a	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #31	ENSGT00940000159005.c.a.a.e.a	ENSGT00940000159005.c.a.a.e.b.b.b.a.b	ENSGT00940000159005.c.a.a.e.b.b.b.a.a	ENSGT00940000159005.c.a.b	ENSGT01010000222549	ENSGT00390000013443.c.i #22	ENSGT00940000159869 #23	ENSGT00940000160550 #24	ENSGT00940000175510	ENSGT00940000159788.a.a ##21	ENSGT00510000047770.c.a	ENSGT00940000160389	ENSGT00940000159313	ENSGT00940000161012	ENSGT00980000199049.B	ENSGT00940000157809.j.a.e.a.t.b	ENSGT00940000163288.a.b.b.b.a.a.a.a.t.d.a.a.a	ENSGT00940000157809.j.a.e.a.s.b	ENSGT00940000163288.a.b.b.b.a.a.a.a.t.d.a.a.b	ENSGT00940000157809.j.a.e.a.s.a	ENSGT00940000163288.b
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	12	ENSGT00940000159005.c.a.a.e.b.a.f.a.b	ENSGT00940000159005.c.a.a.e.b.a.e.a	ENSGT00940000159005.c.a.a.e.b.a.e.b	ENSGT00940000155091.fb	ENSGT00530000064158 #35	ENSGT01030000234518.C.a.a	ENSGT00510000047802 #34	ENSGT00940000159005.c.a.a.e.b.b.a.c	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #31	ENSGT00940000159005.c.a.a.e.a	ENSGT00940000159005.c.a.a.e.b.b.b.a.b	ENSGT00940000159005.c.a.a.e.b.b.b.a.a	ENSGT00940000159005.c.a.b	ENSGT01010000222549	ENSGT00390000013443.c.i #22	ENSGT00940000159869 #23	ENSGT00940000160550 #24	ENSGT00940000175510	ENSGT00940000159788.a.a ##21	ENSGT00510000047770.c.a	ENSGT00940000160389	ENSGT00940000159313	ENSGT00940000161012	ENSGT00940000163288.a.b.b.b.a.a.a.a.t.d.a.a.a	ENSGT00940000157809.j.a.e.a.s.a	ENSGT00940000163288.b	ENSGT00940000175631.g.b	ENSGT00940000157809.j.b.v.b	ENSGT00940000157809.i	ENSGT00940000163288.a.b.b.b.a.a.a.a.t.c
Haplochromini	ANCESTRAL SPECIES	12	ENSGT00940000159005.c.a.a.e.b.a.f.a.a	ENSGT00940000159005.c.a.a.e.b.a.e.b	ENSGT00940000155091.fb	ENSGT00530000064158 #35	ENSGT01030000234518.C.a.a	ENSGT00510000047802 #34	ENSGT00940000159005.c.a.a.e.b.b.a.d	ENSGT00940000159005.c.a.a.e.b.b.a.c	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #31	ENSGT00940000159005.c.a.a.e.a	ENSGT00940000159005.c.a.a.e.b.b.b.a.b	ENSGT00940000159005.c.a.a.e.b.b.b.a.a	ENSGT00940000159005.c.a.b	ENSGT01010000222549	ENSGT00390000013443.c.i #22	ENSGT00940000159869 #23	ENSGT00940000160550 #24	ENSGT00940000175510	ENSGT00940000159788.a.a ##21	ENSGT00510000047770.c.a	ENSGT00940000160389	ENSGT00940000159313	ENSGT00940000161012	ENSGT00940000163288.a.b.b.b.a.a.a.a.t.d.a.a.a.b	ENSGT00940000157809.j.a.e.a.s.a	ENSGT00940000163288.b	ENSGT00940000157809.j.b.v.b	ENSGT00940000175631.g.b	ENSGT00940000157809.i	ENSGT00940000177242.B
Haplochromini_A	ANCESTRAL SPECIES	14	ENSGT00940000159005.c.a.a.e.b.a.f.a.a	ENSGT00940000159005.c.a.a.e.b.a.e.b	ENSGT00940000155091.fb	ENSGT00530000064158 #35	ENSGT01030000234518.C.a.a	ENSGT00510000047802 #34	ENSGT00940000159005.c.a.a.e.b.b.a.d	ENSGT00940000159005.c.a.a.e.b.b.a.c	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #31	ENSGT00940000159005.c.a.a.e.a	ENSGT00940000159005.c.a.a.e.b.b.b.a.b	ENSGT00940000159005.c.a.a.e.b.b.b.a.a	ENSGT00940000159005.c.a.b	ENSGT01010000222549	ENSGT00390000013443.c.i #22	ENSGT00940000159869 #23	ENSGT00940000160550 #24	ENSGT00940000175510	ENSGT00940000159788.a.a ##21	ENSGT00510000047770.c.a	ENSGT00940000160389	ENSGT00940000159313	ENSGT00940000161012	ENSGT00940000163288.a.b.b.b.a.a.a.a.t.d.a.a.a.b	ENSGT00940000157809.j.a.e.a.s.a	ENSGT00940000163288.b	ENSGT00940000157809.j.b.v.b	ENSGT00940000175631.g.b	ENSGT00940000157809.i	ENSGT00940000177242.B
P. nyererei	MODERN SPECIES	553	trip10a (ENSPNYG00000014060)	ENSPNYG00000013982	ENSPNYG00000013931	ENSPNYG00000013910	ppan (ENSPNYG00000013872) #35	p2ry11 (ENSPNYG00000013850)	eif3g (ENSPNYG00000013796) #34	ENSPNYG00000013782	dnmt1 (ENSPNYG00000013676) #33	s1pr2 (ENSPNYG00000013619) #31	ENSPNYG00000013582	ENSPNYG00000013543	ENSPNYG00000013497	ENSPNYG00000013429	ENSPNYG00000013401	CDC37 (ENSPNYG00000013378) #22	TYK2 (ENSPNYG00000013313) #23	raver1 (ENSPNYG00000013284) #24	ENSPNYG00000013264	PDE4A (ENSPNYG00000013235) ##21	prkcsh (ENSPNYG00000013209)	elavl3 (ENSPNYG00000013186)	DOCK6 (ENSPNYG00000013004)	kank2 (ENSPNYG00000012909)	ENSPNYG00000012508	ENSPNYG00000012162	ENSPNYG00000012106	ENSPNYG00000012094	hbba2 (ENSPNYG00000012081)	ENSPNYG00000012017	ENSPNYG00000011577
Haplochromini_B	ANCESTRAL SPECIES	21	ENSGT00940000159005.c.a.a.e.b.a.f.a.a	ENSGT00940000159005.c.a.a.e.b.a.e.b	ENSGT00940000155091.fb	ENSGT00530000064158 #35	ENSGT01030000234518.C.a.a	ENSGT00510000047802 #34	ENSGT00940000159005.c.a.a.e.b.b.a.d	ENSGT00940000159005.c.a.a.e.b.b.a.c	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #31	ENSGT00940000159005.c.a.a.e.a	ENSGT00940000159005.c.a.a.e.b.b.b.a.b	ENSGT00940000159005.c.a.a.e.b.b.b.a.a	ENSGT00940000159005.c.a.b	ENSGT01010000222549	ENSGT00390000013443.c.i #22	ENSGT00940000159869 #23	ENSGT00940000160550 #24	ENSGT00940000175510	ENSGT00940000159788.a.a ##21	ENSGT00510000047770.c.a	ENSGT00940000160389	ENSGT00940000159313	ENSGT00940000161012	ENSGT00940000163288.a.b.b.b.a.a.a.a.t.d.a.a.a.b	ENSGT00940000157809.j.a.e.a.s.a	ENSGT00940000163288.b	ENSGT00940000157809.j.b.v.b	ENSGT00940000175631.g.b	ENSGT00940000157809.i	ENSGT00940000163288.a.b.b.b.a.a.a.a.t.c
Eastern happy	MODERN SPECIES	16	ENSACLG00000019411	ENSACLG00000019321	ENSACLG00000019295	ppan (ENSACLG00000019215) #35	p2ry11 (ENSACLG00000019204)	eif3g (ENSACLG00000019184) #34	ENSACLG00000019169	ENSACLG00000019162	dnmt1 (ENSACLG00000019007) #33	s1pr2 (ENSACLG00000018991) #31	ENSACLG00000018881	ENSACLG00000018862	ENSACLG00000018816	ENSACLG00000018851	ENSACLG00000018801	CDC37 (ENSACLG00000018760) #22	TYK2 (ENSACLG00000018592) #23	raver1 (ENSACLG00000018492) #24	ENSACLG00000018477 #21	PDE4A (ENSACLG00000018415) ##21	prkcsh (ENSACLG00000018299)	elavl3 (ENSACLG00000018260)	DOCK6 (ENSACLG00000018104)	kank2 (ENSACLG00000018048)	ENSACLG00000016694	ENSACLG00000016642	HBE1 (ENSACLG00000016626)	ENSACLG00000016615	ENSACLG00000016350	ENSACLG00000016332	ENSACLG00000016321
Zebra mbuna	MODERN SPECIES	1107	ENSMZEG00005018786	ENSMZEG00005018831	ENSMZEG00005018858	ppan (ENSMZEG00005018872) #35	p2ry11 (ENSMZEG00005018887)	eif3g (ENSMZEG00005018891) #34	ENSMZEG00005018897	ENSMZEG00005018903	dnmt1 (ENSMZEG00005018912) #33	s1pr2 (ENSMZEG00005018920) #31	ENSMZEG00005018932	ENSMZEG00005018951	ENSMZEG00005018958	ENSMZEG00005018964	ENSMZEG00005018967	CDC37 (ENSMZEG00005018972) #22	TYK2 (ENSMZEG00005018982) #23	raver1 (ENSMZEG00005019002) #24	ENSMZEG00005019021	PDE4A (ENSMZEG00005019025) ##21	prkcsh (ENSMZEG00005019038)	elavl3 (ENSMZEG00005019053)	DOCK6 (ENSMZEG00005019081)	kank2 (ENSMZEG00005019112)	ENSMZEG00005019128	ENSMZEG00005019164	ENSMZEG00005022001	ENSMZEG00005022005	ENSMZEG00005022008	hbba2 (ENSMZEG00005022011)	ENSMZEG00005022018
Burton s mouthbrooder	MODERN SPECIES	545	ENSHBUG00000021909	ENSHBUG00000021898	ENSHBUG00000021889	ENSHBUG00000021881	ppan (ENSHBUG00000021830) #35	p2ry11 (ENSHBUG00000021790)	eif3g (ENSHBUG00000021771) #34	ENSHBUG00000021759	ENSHBUG00000021752	dnmt1 (ENSHBUG00000021693) #33	s1pr2 (ENSHBUG00000021406) #31	ENSHBUG00000021387	ENSHBUG00000021361	ENSHBUG00000021344	ENSHBUG00000021331	CDC37 (ENSHBUG00000021324) #22	TYK2 (ENSHBUG00000021308) #23	raver1 (ENSHBUG00000021210) #24	ENSHBUG00000021134	PDE4A (ENSHBUG00000021116) ##21	prkcsh (ENSHBUG00000021079)	elavl3 (ENSHBUG00000020978)	DOCK6 (ENSHBUG00000020938)	kank2 (ENSHBUG00000000642)	ENSHBUG00000020810	ENSHBUG00000020803	ENSHBUG00000020781	ENSHBUG00000020770	ENSHBUG00000020758	hbba2 (ENSHBUG00000020753)	ENSHBUG00000020720
Lyretail cichlid	MODERN SPECIES	345	ENSNBRG00000008305	ENSNBRG00000008387	ENSNBRG00000008420	ENSNBRG00000008442	ppan (ENSNBRG00000008460) #35	p2ry11 (ENSNBRG00000008477)	ENSNBRG00000008496	ENSNBRG00000008512	eif3g (ENSNBRG00000008563) #34	ENSNBRG00000008659	dnmt1 (ENSNBRG00000008917) #33	s1pr2 (ENSNBRG00000009965) #31	ENSNBRG00000009974	ENSNBRG00000010003	ENSNBRG00000010060	CDC37 (ENSNBRG00000010078) #22	ENSNBRG00000010107 #23	raver1 (ENSNBRG00000010139) #24	ENSNBRG00000010174 #21	PDE4A (ENSNBRG00000010191) ##21	prkcsh (ENSNBRG00000010228)	elavl3 (ENSNBRG00000010319)	DOCK6 (ENSNBRG00000010355)	kank2 (ENSNBRG00000010459)	ENSNBRG00000010574	ENSNBRG00000011479	ENSNBRG00000012170	hbba1 (ENSNBRG00000012180)	ENSNBRG00000012185	ENSNBRG00000012208	ENSNBRG00000012692
Nile tilapia	MODERN SPECIES	16	eif3g (ENSONIG00000001592) #34	ENSONIG00000001573	ENSONIG00000029363	ENSONIG00000038021	dnmt1 (ENSONIG00000001574) #33	ENSONIG00000001591	ENSONIG00000031433	ENSONIG00000037128	ENSONIG00000038742	s1pr2 (ENSONIG00000020937) #31	ENSONIG00000037338	ENSONIG00000029589	ENSONIG00000042422	ENSONIG00000042135	ENSONIG00000040106	CDC37 (ENSONIG00000001568) #22	TYK2 (ENSONIG00000001561) #23	raver1 (ENSONIG00000001559) #24	PDE4A (ENSONIG00000001548) ##21	prkcsh (ENSONIG00000001542)	elavl3 (ENSONIG00000001538)	DOCK6 (ENSONIG00000001526)	kank2 (ENSONIG00000001524)	ENSONIG00000039159	ENSONIG00000034222	ENSONIG00000030982	ENSONIG00000037711	ENSONIG00000032412	ENSONIG00000037601	ENSONIG00000027602	ENSONIG00000019774
Midas cichlid	MODERN SPECIES	300	col5a3a (ENSACIG00000007179)	olfm2a (ENSACIG00000007331)	trip10a (ENSACIG00000007355)	ENSACIG00000007384	angptl6 (ENSACIG00000007395) #36	ppan (ENSACIG00000007417) #35	p2ry11 (ENSACIG00000007471)	eif3g (ENSACIG00000007489) #34	ENSACIG00000007649	dnmt1 (ENSACIG00000007700) #33	s1pr2 (ENSACIG00000008591) #31	ENSACIG00000008610	ENSACIG00000008733	ENSACIG00000008744	ENSACIG00000008765	CDC37 (ENSACIG00000008774) #22	TYK2 (ENSACIG00000008801) #23	raver1 (ENSACIG00000008853) #24
Atherinomorphae	ANCESTRAL SPECIES	6	ENSGT00940000154535.A	ENSGT00940000159148.a	ENSGT00950000183047.c.a.a	ENSGT00940000159005.c.a.a.e.b.a	ENSGT00940000160969 #36	ENSGT00530000064158 #35	ENSGT01030000234518.C.a.a	ENSGT00510000047802 #34	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #31	ENSGT00940000159005.c.a.a.e.a	ENSGT01030000235614	ENSGT00940000159005.c.a.a.e.b.b	ENSGT00940000159005.c.a.b	ENSGT01010000222549	ENSGT00390000013443.c.i #22	ENSGT00940000159869 #23	ENSGT00940000160550 #24	ENSGT00940000175510	ENSGT00940000159788.a.a ##21	ENSGT00510000047770.c.a	ENSGT00940000160389	ENSGT00770000121797	ENSGT00940000159313	ENSGT00940000161012	ENSGT00940000163288.a.b.b.b.a.a.a.a.s.a.a.b	ENSGT00940000157809.j.a.e.a	ENSGT00940000163288.a.b.b.b.a.a.a.a.s.b	ENSGT00940000163288.a.a	ENSGT00940000157809.j.b	ENSGT00940000157809.i
Cyprinodontiformes	ANCESTRAL SPECIES	3	ENSGT00940000154535.A	ENSGT00940000159148.a	ENSGT00950000183047.c.a.a	ENSGT00940000159005.c.a.a.e.b.a	ENSGT00940000160969 #36	ENSGT00530000064158 #35	ENSGT01030000234518.C.a.a	ENSGT00510000047802 #34	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #31	ENSGT00940000159005.c.a.a.e.a	ENSGT00940000159005.d	ENSGT00940000159005.c.a.a.e.b.b	ENSGT00940000159005.c.a.b	ENSGT01010000222549	ENSGT00390000013443.c.i #22	ENSGT00940000159869 #23	ENSGT00940000160550 #24	ENSGT00940000175510	ENSGT00940000159788.a.a ##21	ENSGT00510000047770.c.a	ENSGT00940000160389	ENSGT00770000121797	ENSGT00940000159313	ENSGT00940000161012	ENSGT00940000163288.a.b.b.b.a.a.a.a.s.a.a.b	ENSGT00940000157809.j.a.e.a.o	ENSGT01100000265185	ENSGT00940000157809.j.a.e.a.p	ENSGT00940000163288.a.b.b.b.a.a.a.a.s.b	ENSGT00940000163288.a.a
Aplocheiloidei	ANCESTRAL SPECIES	7	ENSGT00940000155412.a.a.a	ENSGT00940000154535.A	ENSGT00940000159148.a	ENSGT00950000183047.c.a.a	ENSGT00940000159005.c.a.a.e.b.a	ENSGT00940000155091.fb	ENSGT00530000064158 #35	ENSGT01030000234518.C.a.a	ENSGT00510000047802 #34	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #31	ENSGT00940000159005.c.a.a.e.a	ENSGT00940000159005.c.a.a.e.b.b	ENSGT00940000159005.c.a.b	ENSGT01010000222549	ENSGT00390000013443.c.i #22	ENSGT00940000159869 #23	ENSGT00940000160550 #24	ENSGT00940000159788.a.a ##21	ENSGT00510000047770.c.a	ENSGT00940000160389	ENSGT00940000159313	ENSGT00940000161012	ENSGT00940000163288.a.b.b.b.a.a.a.a.s.a.a.b.g	ENSGT00940000157809.j.a.e.a.o	ENSGT01100000265185	ENSGT00940000163288.a.b.b.b.a.a.a.a.t	ENSGT00940000163288.b	ENSGT00940000175631	ENSGT00940000157809.j.b	ENSGT00940000157809.i
Mangrove rivulus	MODERN SPECIES	122	rdh8a (ENSKMAG00000016106)	col5a3a (ENSKMAG00000016148)	olfm2a (ENSKMAG00000016277)	trip10a (ENSKMAG00000016354)	ENSKMAG00000016485	ENSKMAG00000016497	ppan (ENSKMAG00000016509) #35	p2ry11 (ENSKMAG00000016553)	eif3g (ENSKMAG00000016570) #34	dnmt1 (ENSKMAG00000016648) #33	s1pr2 (ENSKMAG00000017200) #31	ENSKMAG00000017208	ENSKMAG00000017231	ENSKMAG00000017240	ENSKMAG00000017252	CDC37 (ENSKMAG00000017269) #22	TYK2 (ENSKMAG00000017285) #23	raver1 (ENSKMAG00000017355) #24	PDE4A (ENSKMAG00000017373) ##21	elavl3 (ENSKMAG00000017412)	prkcsh (ENSKMAG00000017470)	DOCK6 (ENSKMAG00000017602)	kank2 (ENSKMAG00000017957)	ENSKMAG00000017980	ENSKMAG00000017990	ENSKMAG00000017996	ENSKMAG00000018003	ENSKMAG00000018021	HBE1 (ENSKMAG00000018057)	hbba2 (ENSKMAG00000018065)	ENSKMAG00000018079
Turquoise killifish	MODERN SPECIES	1614	COL5A3A (ENSNFUG00015005356)	olfm2a (ENSNFUG00015005557)	ENSNFUG00015005575	trip10a (ENSNFUG00015005626)	ENSNFUG00015005993	ENSNFUG00015006007	ENSNFUG00015006055	PPAN (ENSNFUG00015006147) #35	p2ry11 (ENSNFUG00015006200)	EIF3G (ENSNFUG00015006209) #34	s1pr2 (ENSNFUG00015006843) #31	ENSNFUG00015006844	ENSNFUG00015006853	ENSNFUG00015006871	ENSNFUG00015006894	CABZ01043370.1 (ENSNFUG00015006902) #22	ENSNFUG00015006929	TYK2 (ENSNFUG00015006968) #23	RAVER1 (ENSNFUG00015007114) #24	PDE4A (ENSNFUG00015007167) ##21	PRKCSH (ENSNFUG00015007421)	elavl3 (ENSNFUG00015007443)	kank2 (ENSNFUG00015007571)	ENSNFUG00015007588	GB-BETA4 (ENSNFUG00015007590)	ENSNFUG00015007593	ENSNFUG00015007594	Nfu_g_1_007730 (ENSNFUG00015007598)	ENSNFUG00015007602	Nfu_g_1_007614 (ENSNFUG00015007606)	hbba2 (ENSNFUG00015007612)
Cyprinodontoidei	ANCESTRAL SPECIES	18	ENSGT00940000154535.A	ENSGT00940000159148.a	ENSGT00950000183047.c.a.a	ENSGT00940000159005.c.a.a.e.b.a	ENSGT00940000160969 #36	ENSGT00530000064158 #35	ENSGT01030000234518.C.a.a	ENSGT00510000047802 #34	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #31	ENSGT00940000159005.c.a.a.e.a	ENSGT00940000159005.d	ENSGT00940000159005.c.a.a.e.b.b	ENSGT00940000159005.c.a.b	ENSGT01010000222549	ENSGT00390000013443.c.i #22	ENSGT00940000159869 #23	ENSGT00940000160550 #24	ENSGT00940000175510	ENSGT00940000159788.a.a ##21	ENSGT00510000047770.c.a	ENSGT00940000160389	ENSGT00770000121797	ENSGT00940000159313	ENSGT00940000161012	ENSGT00940000163288.a.b.b.b.a.a.a.a.s.a.a.b	ENSGT00940000157809.j.a.e.a.o	ENSGT00940000163288.b	ENSGT00940000157809.j.b.t	ENSGT00940000157809.i	ENSGT00940000163288.a.b.b.b.a.a.a.a.s.a.b
Poeciliinae	ANCESTRAL SPECIES	1	ENSGT01000000214708.a.a	ENSGT00940000154535.A	ENSGT00940000159148.a	ENSGT00950000183047.c.a.a	ENSGT00940000159005.c.a.a.e.b.a	ENSGT00940000160969 #36	ENSGT00530000064158 #35	ENSGT01030000234518.C.a.a	ENSGT00510000047802 #34	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #31	ENSGT00940000159005.c.a.a.e.a	ENSGT00940000159005.c.a.a.e.b.b	ENSGT00940000159005.c.a.b	ENSGT01010000222549	ENSGT00390000013443.c.i #22	ENSGT00940000159869 #23	ENSGT00940000160550 #24	ENSGT00940000175510	ENSGT00940000159788.a.a ##21	ENSGT00510000047770.c.a	ENSGT00940000160389	ENSGT00770000121797	ENSGT00940000159313	ENSGT00940000161012	ENSGT00940000163288.a.b.b.b.a.a.a.a.s.a.a.b.m.a	ENSGT00940000163288.b	ENSGT00940000157809.j.b.t	ENSGT00940000157809.i	ENSGT00940000163288.a.b.b.b.a.a.a.a.s.a.b	ENSGT00940000157809.j.a.e.a.p
Poecilia	ANCESTRAL SPECIES	8	ENSGT01000000214708.a.a	ENSGT00940000154535.A	ENSGT00940000159148.a	ENSGT00950000183047.c.a.a	ENSGT00940000159005.c.a.a.e.b.a	ENSGT00940000160969 #36	ENSGT00530000064158 #35	ENSGT01030000234518.C.a.a	ENSGT00510000047802 #34	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #31	ENSGT00940000159005.c.a.a.e.a	ENSGT01030000235614	ENSGT00940000159005.c.a.b	ENSGT01010000222549	ENSGT00390000013443.c.i #22	ENSGT00940000159869 #23	ENSGT00940000160550 #24	ENSGT00940000175510	ENSGT00940000159788.a.a ##21	ENSGT00510000047770.c.a	ENSGT00940000160389	ENSGT00940000159313	ENSGT00770000121797	ENSGT00940000161012	ENSGT00940000163288.a.b.b.b.a.a.a.a.s.a.a.b.m.a	ENSGT00940000163288.b	ENSGT00940000157809.j.b.t	ENSGT00940000157809.i	ENSGT00940000163288.a.b.b.b.a.a.a.a.s.a.b	ENSGT00940000157809.j.a.e.a.p
NAME_6	ANCESTRAL SPECIES	8	ENSGT00940000160234.b	ENSGT00940000155412.a.a.a	ENSGT00940000154535.A	ENSGT00940000159148.a	ENSGT00950000183047.c.a.a	ENSGT00940000159005.c.a.a.e.b.a	ENSGT00940000160969 #36	ENSGT00530000064158 #35	ENSGT01030000234518.C.a.a	ENSGT00510000047802 #34	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #31	ENSGT00940000159005.c.a.a.e.b.b	ENSGT00940000159005.c.a.b	ENSGT01010000222549	ENSGT00390000013443.c.i #22	ENSGT00940000159869 #23	ENSGT00940000160550 #24	ENSGT00940000159788.a.a ##21	ENSGT00510000047770.c.a	ENSGT00940000160389	ENSGT00940000159313	ENSGT00770000121797	ENSGT00940000161012	ENSGT00940000163288.a.b.b.b.a.a.a.a.s.a.a.b.m.a	ENSGT00940000163288.b	ENSGT00940000157809.j.b.t	ENSGT00940000157809.i	ENSGT00940000163288.a.b.b.b.a.a.a.a.s.a.b	ENSGT00940000157809.j.a.e.a.p.c	ENSGT00940000163288.a.b.b.b.a.a.a.a.s.a.a.a.c
Amazon molly	MODERN SPECIES	365	ENSPFOG00000001741	notch3 (ENSPFOG00000002047)	rdh8a (ENSPFOG00000002865)	col5a3a (ENSPFOG00000003150)	olfm2a (ENSPFOG00000004850)	trip10a (ENSPFOG00000004949)	ENSPFOG00000005292	angptl6 (ENSPFOG00000005348) #36	ppan (ENSPFOG00000005396) #35	eif3g (ENSPFOG00000023526) #34	dnmt1 (ENSPFOG00000005624) #33	s1pr2 (ENSPFOG00000020965) #31	ENSPFOG00000023772	ENSPFOG00000022270	ENSPFOG00000006343	CDC37 (ENSPFOG00000006386) #22	TYK2 (ENSPFOG00000006605) #23	raver1 (ENSPFOG00000007016) #24	PDE4A (ENSPFOG00000007155) ##21	prkcsh (ENSPFOG00000007594)	elavl3 (ENSPFOG00000007754)	DOCK6 (ENSPFOG00000007835)	angptl8 (ENSPFOG00000023978)	kank2 (ENSPFOG00000009584)	ENSPFOG00000009648	ENSPFOG00000009701	HBE1 (ENSPFOG00000022890)	hbba2 (ENSPFOG00000009771)	ENSPFOG00000009815	ENSPFOG00000023153	ENSPFOG00000009874
Sailfin molly	MODERN SPECIES	83	rdh8a (ENSPLAG00000021704)	col5a3a (ENSPLAG00000021695)	olfm2a (ENSPLAG00000021557)	trip10a (ENSPLAG00000021545)	ENSPLAG00000021486	angptl6 (ENSPLAG00000021468) #36	ppan (ENSPLAG00000021445) #35	p2ry11 (ENSPLAG00000021437)	eif3g (ENSPLAG00000021428) #34	dnmt1 (ENSPLAG00000021412) #33	s1pr2 (ENSPLAG00000021324) #31	ENSPLAG00000021312	ENSPLAG00000021301	ENSPLAG00000021291	ENSPLAG00000021270	CDC37 (ENSPLAG00000021265) #22	TYK2 (ENSPLAG00000021239) #23	raver1 (ENSPLAG00000020793) #24
Guppy	MODERN SPECIES	460	rdh8a (ENSPREG00000006168)	ENSPREG00000006178	ENSPREG00000006191	olfm2a (ENSPREG00000006223)	trip10a (ENSPREG00000006251)	ENSPREG00000006295	ENSPREG00000006308	ppan (ENSPREG00000006330) #35	p2ry11 (ENSPREG00000006343)	eif3g (ENSPREG00000006361) #34	dnmt1 (ENSPREG00000006493) #33	ENSPREG00000006656	ENSPREG00000006725	ENSPREG00000006735	ENSPREG00000006743	CDC37 (ENSPREG00000006762) #22	TYK2 (ENSPREG00000006784) #23	raver1 (ENSPREG00000006864) #24	ENSPREG00000006915	PDE4A (ENSPREG00000006925) ##21	prkcsh (ENSPREG00000006944)	elavl3 (ENSPREG00000006971)	DOCK6 (ENSPREG00000007038)	ENSPREG00000007354	kank2 (ENSPREG00000007372)	ENSPREG00000007393	ENSPREG00000007451	HBE1 (ENSPREG00000007465)	ENSPREG00000007474	ENSPREG00000007489	ENSPREG00000007549
Platyfish	MODERN SPECIES	7	rdh8a (ENSXMAG00000017749)	col5a3a (ENSXMAG00000017753)	olfm2a (ENSXMAG00000023951)	trip10a (ENSXMAG00000018020)	ENSXMAG00000018047	ENSXMAG00000018050	ppan (ENSXMAG00000028708) #35	p2ry11 (ENSXMAG00000018059)	eif3g (ENSXMAG00000018061) #34	dnmt1 (ENSXMAG00000018063) #33	s1pr2 (ENSXMAG00000019951) #31	ENSXMAG00000022484	ENSXMAG00000023427	ENSXMAG00000023644	ENSXMAG00000027224	CDC37 (ENSXMAG00000000251) #22	TYK2 (ENSXMAG00000000220) #23	raver1 (ENSXMAG00000000217) #24	ENSXMAG00000023514	PDE4A (ENSXMAG00000000208) ##21	prkcsh (ENSXMAG00000018292)	elavl3 (ENSXMAG00000018287)	ENSXMAG00000025329	DOCK6 (ENSXMAG00000000198)	kank2 (ENSXMAG00000000190)	ENSXMAG00000020887	ENSXMAG00000025907	ENSXMAG00000000181	HBE1 (ENSXMAG00000024796)	hbba2 (ENSXMAG00000000178)	ENSXMAG00000021622
NAME_4	ANCESTRAL SPECIES	3	ENSGT00940000154535.A	ENSGT00940000159148.a	ENSGT00950000183047.c.a.a	ENSGT00940000159005.c.a.a.e.b.a	ENSGT00940000160969 #36	ENSGT00530000064158 #35	ENSGT01030000234518.C.a.a	ENSGT00510000047802 #34	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #31	ENSGT00940000159005.c.a.a.e.a	ENSGT00940000159005.d	ENSGT00940000159005.c.a.a.e.b.b	ENSGT00940000159005.c.a.b	ENSGT01010000222549	ENSGT00390000013443.c.i #22	ENSGT00940000159869 #23	ENSGT00940000160550 #24	ENSGT00940000175510	ENSGT00940000159788.a.a ##21	ENSGT00510000047770.c.a	ENSGT00940000160389	ENSGT00940000159313	ENSGT00940000161012	ENSGT00940000163288.a.b.b.b.a.a.a.a.s.a.a.b	ENSGT00940000157809.j.a.e.a.o	ENSGT01030000235978.b	ENSGT00940000163288.b	ENSGT00940000157809.j.b.t	ENSGT01100000263832	ENSGT00940000157809.i
Sheepshead minnow	MODERN SPECIES	180	olfm2a (ENSCVAG00000013391)	trip10a (ENSCVAG00000013519)	ENSCVAG00000013533	angptl6 (ENSCVAG00000013541) #36	ppan (ENSCVAG00000013547) #35	p2ry11 (ENSCVAG00000013550)	eif3g (ENSCVAG00000013580) #34	dnmt1 (ENSCVAG00000013611) #33	s1pr2 (ENSCVAG00000013621) #31	ENSCVAG00000013641	ENSCVAG00000013655	ENSCVAG00000013695	ENSCVAG00000013716	ENSCVAG00000013733	ENSCVAG00000013740	CDC37 (ENSCVAG00000013754) #22	TYK2 (ENSCVAG00000013846) #23	raver1 (ENSCVAG00000013971) #24	ENSCVAG00000013986	ENSCVAG00000013999 ##21	prkcsh (ENSCVAG00000014007)	elavl3 (ENSCVAG00000014060)	DOCK6 (ENSCVAG00000014182)	kank2 (ENSCVAG00000014199)	ENSCVAG00000014208	ENSCVAG00000014225	ENSCVAG00000014215	ENSCVAG00000014251	ENSCVAG00000014259	HBE1 (ENSCVAG00000014264)	hbba2 (ENSCVAG00000014274)
Mummichog	MODERN SPECIES	2407	olfm2a (ENSFHEG00000001502)	trip10a (ENSFHEG00000001521)	ENSFHEG00000001534	angptl6 (ENSFHEG00000001545) #36	ppan (ENSFHEG00000001554) #35	p2ry11 (ENSFHEG00000001560)	eif3g (ENSFHEG00000001569) #34	dnmt1 (ENSFHEG00000001593) #33	s1pr2 (ENSFHEG00000001604) #31	ENSFHEG00000001610	ENSFHEG00000000053	ENSFHEG00000001621	ENSFHEG00000001628	ENSFHEG00000001634	ENSFHEG00000001639	CDC37 (ENSFHEG00000001641) #22	TYK2 (ENSFHEG00000001646) #23	raver1 (ENSFHEG00000001653) #24	ENSFHEG00000001656	PDE4A (ENSFHEG00000001663) ##21	prkcsh (ENSFHEG00000001671)	elavl3 (ENSFHEG00000001675)	DOCK6 (ENSFHEG00000001700)	kank2 (ENSFHEG00000001712)	ENSFHEG00000001717	ENSFHEG00000001759	ENSFHEG00000001767	ENSFHEG00000001769	ENSFHEG00000001771	HBE1 (ENSFHEG00000001778)	ENSFHEG00000001784
Oryzias	ANCESTRAL SPECIES		ENSGT00940000155412.a.a.a	ENSGT00940000154535.A	ENSGT00940000159148.a	ENSGT00950000183047.c.a.a	ENSGT00940000159005.c.a.a.e.b.a	ENSGT00940000160969 #36	ENSGT00530000064158 #35	ENSGT01030000234518.C.a.a	ENSGT00510000047802 #34	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #31	ENSGT00940000159005.c.a.a.e.a	ENSGT00940000159005.c.a.a.e.b.b	ENSGT00940000159005.c.a.b	ENSGT01010000222549	ENSGT00390000013443.c.i #22	ENSGT00940000159869 #23	ENSGT00940000160550 #24	ENSGT00940000175510	ENSGT00940000159788.a.a ##21	ENSGT00510000047770.c.a	ENSGT00940000160389	ENSGT00940000159313	ENSGT00940000161012	ENSGT00940000163288.a.b.b.b.a.a.a.a.s.a.a.b	ENSGT00940000157809.j.a.e.a.r	ENSGT00940000163288.a.b.b.b.a.a.a.a.s.a.b	ENSGT00940000157809.j.a.e.a.q.a	ENSGT00940000163288.a.b.b.b.a.a.a.a.s.a.a.a.a	ENSGT00940000157809.j.a.e.a.q.b	ENSGT00940000163288.a.b.b.b.a.a.a.a.s.a.a.a.b
Oryzias_b	ANCESTRAL SPECIES	11	ENSGT00940000155412.a.a.a	ENSGT00940000154535.A	ENSGT00940000159148.a	ENSGT00950000183047.c.a.a	ENSGT00940000159005.c.a.a.e.b.a	ENSGT00940000160969 #36	ENSGT00530000064158 #35	ENSGT01030000234518.C.a.a	ENSGT00510000047802 #34	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #31	ENSGT00940000159005.c.a.a.e.a	ENSGT00940000159005.c.a.a.e.b.b	ENSGT00940000159005.c.a.b	ENSGT01010000222549	ENSGT00390000013443.c.i #22	ENSGT00940000159869 #23	ENSGT00940000160550 #24	ENSGT00940000175510	ENSGT00940000159788.a.a ##21	ENSGT00510000047770.c.a	ENSGT00940000160389	ENSGT00940000159313	ENSGT00940000161012	ENSGT00940000163288.a.b.b.b.a.a.a.a.s.a.a.b	ENSGT00940000157809.j.a.e.a.r	ENSGT00940000163288.a.b.b.b.a.a.a.a.s.a.b	ENSGT00940000157809.j.a.e.a.q.a	ENSGT00940000163288.a.b.b.b.a.a.a.a.s.a.a.a.a	ENSGT00940000157809.j.a.e.a.q.b	ENSGT00940000163288.a.b.b.b.a.a.a.a.s.a.a.a.b
Indian medaka	MODERN SPECIES	9	olfm2a (ENSOMEG00000023939)	trip10a (ENSOMEG00000023940)	ENSOMEG00000023941	angptl6 (ENSOMEG00000023942) #36	ppan (ENSOMEG00000023943) #35	p2ry11 (ENSOMEG00000023944)	eif3g (ENSOMEG00000023945) #34	dnmt1 (ENSOMEG00000023946) #33	s1pr2 (ENSOMEG00000023947) #31	ENSOMEG00000023948	ENSOMEG00000023949	ENSOMEG00000023950	ENSOMEG00000023951	ENSOMEG00000023952	CMC4 (ENSOMEG00000023953)	CDC37 (ENSOMEG00000023954) #22	TYK2 (ENSOMEG00000023955) #23	raver1 (ENSOMEG00000023956) #24	PDE4A (ENSOMEG00000023957) ##21	prkcsh (ENSOMEG00000023958)	elavl3 (ENSOMEG00000023959)	ENSOMEG00000023960	ENSOMEG00000023961	kank2 (ENSOMEG00000023962)	ENSOMEG00000023963	ENSOMEG00000023964	ENSOMEG00000023965	ENSOMEG00000023966	ENSOMEG00000023967	ENSOMEG00000023968	ENSOMEG00000023969
Javanese ricefish	MODERN SPECIES	22	rdh8a (ENSOJAG00000017306)	ENSOJAG00000017331	olfm2a (ENSOJAG00000017567)	ENSOJAG00000017588	trip10a (ENSOJAG00000017809)	ENSOJAG00000019451	angptl6 (ENSOJAG00000019503) #36	ppan (ENSOJAG00000019530) #35	p2ry11 (ENSOJAG00000019607)	EIF3G (ENSOJAG00000019618) #34	s1pr2 (ENSOJAG00000020715) #31	ENSOJAG00000020727	ENSOJAG00000020780	ENSOJAG00000020807	ENSOJAG00000020814	CDC37 (ENSOJAG00000020825) #22	TYK2 (ENSOJAG00000020936) #23	raver1 (ENSOJAG00000021559) #24	ENSOJAG00000021561	PDE4A (ENSOJAG00000021585) ##21	prkcsh (ENSOJAG00000021655)	elavl3 (ENSOJAG00000021690)	DOCK6 (ENSOJAG00000021995)	ENSOJAG00000022996	ENSOJAG00000023010	ENSOJAG00000023018	ENSOJAG00000023024	ENSOJAG00000023031	HBE1 (ENSOJAG00000023035)	ENSOJAG00000023039	nprl3 (ENSOJAG00000023060)
Oryzias_a	ANCESTRAL SPECIES	10	ENSGT00940000155412.a.a.a	ENSGT00940000154535.A	ENSGT00940000159148.a	ENSGT00950000183047.c.a.a	ENSGT00940000159005.c.a.a.e.b.a	ENSGT00940000160969 #36	ENSGT00530000064158 #35	ENSGT01030000234518.C.a.a	ENSGT00510000047802 #34	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #31	ENSGT00940000159005.c.a.a.e.a	ENSGT00940000159005.c.a.a.e.b.b	ENSGT00940000159005.c.a.b	ENSGT01010000222549	ENSGT00390000013443.c.i #22	ENSGT00940000159869 #23	ENSGT00940000160550 #24	ENSGT00940000175510	ENSGT00940000159788.a.a ##21	ENSGT00510000047770.c.a	ENSGT00940000160389	ENSGT00940000159313	ENSGT00940000161012	ENSGT00940000163288.a.b.b.b.a.a.a.a.s.a.a.b	ENSGT00940000157809.j.a.e.a.r	ENSGT00980000199049.C	ENSGT00940000157809.i	ENSGT00940000163288.a.b.b.b.a.a.a.a.s.a.b	ENSGT00940000157809.j.a.e.a.q.a	ENSGT00940000163288.a.b.b.b.a.a.a.a.s.a.a.a.a
Japanese Medaka HdrR	MODERN SPECIES	22	rdh8a (ENSORLG00000005853)	ENSORLG00000005829	olfm2a (ENSORLG00000005795)	trip10a (ENSORLG00000005760)	ENSORLG00000023894	angptl6 (ENSORLG00000005649) #36	ppan (ENSORLG00000005634) #35	p2ry11 (ENSORLG00000005606)	EIF3G (ENSORLG00000005601) #34	dnmt1 (ENSORLG00000005582) #33	s1pr2 (ENSORLG00000005560) #31	ENSORLG00000022189	ENSORLG00000028927	ENSORLG00000005550	ENSORLG00000024653	CDC37 (ENSORLG00000005543) #22	TYK2 (ENSORLG00000005519) #23	raver1 (ENSORLG00000005458) #24	ENSORLG00000026780	PDE4A (ENSORLG00000005439) ##21	prkcsh (ENSORLG00000005398)	elavl3 (ENSORLG00000005379)	DOCK6 (ENSORLG00000005365)	kank2 (ENSORLG00000005329)	Gb-alpha1 (ENSORLG00000005297)	ENSORLG00000025271	Gb-alpha1 (ENSORLG00000005210)	ENSORLG00000005283	ENSORLG00000027445	HBE1 (ENSORLG00000025745)	ENSORLG00000005267
Chinese medaka	MODERN SPECIES	837	notch3 (ENSOSIG00000014381)	rdh8a (ENSOSIG00000019316)	col5a3a (ENSOSIG00000019325)	olfm2a (ENSOSIG00000019329)	trip10a (ENSOSIG00000004457)	ENSOSIG00000007608	angptl6 (ENSOSIG00000007609) #36	ppan (ENSOSIG00000007610) #35	p2ry11 (ENSOSIG00000007642)	eif3g (ENSOSIG00000007646) #34	dnmt1 (ENSOSIG00000007652) #33	s1pr2 (ENSOSIG00000007678) #31	ENSOSIG00000007681	ENSOSIG00000007685	ENSOSIG00000007687	CDC37 (ENSOSIG00000007689) #22	TYK2 (ENSOSIG00000007692) #23	raver1 (ENSOSIG00000008498) #24	PDE4A (ENSOSIG00000008506) ##21	prkcsh (ENSOSIG00000009534)	elavl3 (ENSOSIG00000009544)	DOCK6 (ENSOSIG00000010275)	kank2 (ENSOSIG00000019538)	ENSOSIG00000019540	ENSOSIG00000019543	ENSOSIG00000019560	ENSOSIG00000019561	ENSOSIG00000019563	ENSOSIG00000019566	ENSOSIG00000019568	ENSOSIG00000019569
Percomorphaceae_C	ANCESTRAL SPECIES		ENSGT00940000159148.a	ENSGT00950000183047.c.a.a	ENSGT00940000159005.c.a.a.e.b.a	ENSGT00940000160969 #36	ENSGT00530000064158 #35	ENSGT01030000234518.C.a.a	ENSGT00510000047802 #34	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #31	ENSGT00940000159005.c.a.a.e.a	ENSGT01030000235614	ENSGT00940000159005.d	ENSGT00940000159005.c.a.a.e.b.b	ENSGT00940000159005.c.a.b	ENSGT01010000222549	ENSGT00390000013443.c.i #22	ENSGT00940000159869 #23	ENSGT00940000160550 #24	ENSGT00940000175510	ENSGT00940000159788.a.a ##21	ENSGT00510000047770.c.a	ENSGT00940000160389	ENSGT00940000159313	ENSGT00940000161012	ENSGT00940000163288.a.b.b.b.a.a.a.a.s.b	ENSGT00940000177242.B	ENSGT00940000163288.a.b.b.b.a.a.a.a.t	ENSGT00940000163288.b	ENSGT00940000175631	ENSGT00940000157809.i	ENSGT00940000163288.a.b.b.b.a.a.a.a.s.a.b
Eupercaria	ANCESTRAL SPECIES	3	ENSGT00940000154535.A	ENSGT00940000159148.a	ENSGT00950000183047.c.a.a	ENSGT00940000159005.c.a.a.e.b.a	ENSGT00940000160969 #36	ENSGT00530000064158 #35	ENSGT01030000234518.C.a.a	ENSGT00510000047802 #34	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #31	ENSGT00940000159005.c.a.a.e.a	ENSGT01030000235614	ENSGT00940000159005.c.a.a.e.b.b	ENSGT00940000159005.c.a.b	ENSGT01010000222549	ENSGT00390000013443.c.i #22	ENSGT00940000159869 #23	ENSGT00940000160550 #24	ENSGT00940000175510	ENSGT00940000159788.a.a ##21	ENSGT00510000047770.c.a	ENSGT00940000160389	ENSGT00940000159313	ENSGT00940000161012	ENSGT00940000163288.a.b.b.b.a.a.a.a.s.b	ENSGT00940000157809.j.a.e.a	ENSGT00980000199049.B	ENSGT00940000163288.b	ENSGT00940000175631	ENSGT00940000157809.j.b	ENSGT00390000015916
Tetraodontidae	ANCESTRAL SPECIES	8	ENSGT00940000160234.b	ENSGT00940000155412.a.a.a	ENSGT00940000154535.A	ENSGT00940000159148.a	ENSGT00950000183047.c.a.a	ENSGT00940000159005.c.a.a.e.b.a	ENSGT00940000160969 #36	ENSGT00530000064158 #35	ENSGT01030000234518.C.a.a	ENSGT00510000047802 #34	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #31	ENSGT00940000159005.c.a.a.e.a	ENSGT00940000159005.c.a.b	ENSGT00390000012647	ENSGT00390000013443.c.i #22	ENSGT00940000159869 #23	ENSGT00940000160550 #24	ENSGT00940000159788.a.a ##21	ENSGT00510000047770.c.a	ENSGT00940000160389	ENSGT00940000159313	ENSGT00940000161012	ENSGT00940000163288.a.b.b.b.a.a.a.a.s.b	ENSGT00940000163288.a.b.b.b.a.a.a.a.t	ENSGT00390000015916	ENSGT00390000009825	ENSGT00940000156278	ENSGT00390000015579.a.a.b	ENSGT00390000009925.a	ENSGT00940000157696
Tetraodon	MODERN SPECIES	18	CAMSAP3 (ENSTNIG00000018556)	nr5a5 (ENSTNIG00000018557)	ENSTNIG00000018558	notch3 (ENSTNIG00000018559)	rdh8a (ENSTNIG00000001228)	col5a3a (ENSTNIG00000018560)	olfm2a (ENSTNIG00000018561)	trip10a (ENSTNIG00000018562)	ENSTNIG00000001536	angptl6 (ENSTNIG00000018563) #36	ppan (ENSTNIG00000018564) #35	p2ry11 (ENSTNIG00000018565)	eif3g (ENSTNIG00000018566) #34	dnmt1 (ENSTNIG00000018567) #33	s1pr2 (ENSTNIG00000000436) #31	CDC37 (ENSTNIG00000018568) #22	ENSTNIG00000018569 #23	raver1 (ENSTNIG00000018570) #24	prkcsh (ENSTNIG00000018571)	elavl3 (ENSTNIG00000018572)	DOCK6 (ENSTNIG00000018573)	ENSTNIG00000018574	kank2 (ENSTNIG00000018575)	ENSTNIG00000018576	ENSTNIG00000018577	nprl3 (ENSTNIG00000018578)	mpg (ENSTNIG00000018579)	rhbdf1a (ENSTNIG00000018580)	aanat2 (ENSTNIG00000018581)	mgrn1b (ENSTNIG00000018582)	cdip1 (ENSTNIG00000018583)
Fugu	MODERN SPECIES	17	notch3 (ENSTRUG00000004154)	rdh8a (ENSTRUG00000005536)	ENSTRUG00000031065	olfm2a (ENSTRUG00000007092)	trip10a (ENSTRUG00000007309)	ENSTRUG00000022300	angptl6 (ENSTRUG00000007516) #36	ppan (ENSTRUG00000007656) #35	p2ry11 (ENSTRUG00000007913)	eif3g (ENSTRUG00000024880) #34	dnmt1 (ENSTRUG00000008132) #33	s1pr2 (ENSTRUG00000008897) #31	ENSTRUG00000022863	ENSTRUG00000024685	ENSTRUG00000028798	CDC37 (ENSTRUG00000008922) #22	ENSTRUG00000009121 #23	raver1 (ENSTRUG00000025641) #24	PDE4A (ENSTRUG00000010334) ##21	prkcsh (ENSTRUG00000010469)	elavl3 (ENSTRUG00000010719)	DOCK6 (ENSTRUG00000010783)	kank2 (ENSTRUG00000011152)	ENSTRUG00000022530	nprl3 (ENSTRUG00000011330)	mpg (ENSTRUG00000011407)	rhbdf1a (ENSTRUG00000011433)	aanat2 (ENSTRUG00000011652)	mgrn1b (ENSTRUG00000011724)	cdip1 (ENSTRUG00000011801)	polr3k (ENSTRUG00000011844)
Eupecaria_A	ANCESTRAL SPECIES	5	ENSGT00940000159148.a	ENSGT00950000183047.c.a.a	ENSGT00940000159005.c.a.a.e.b.a	ENSGT00940000160969 #36	ENSGT00940000155091.fb	ENSGT00530000064158 #35	ENSGT01030000234518.C.a.a	ENSGT00510000047802 #34	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #31	ENSGT00940000159005.c.a.a.e.a	ENSGT01030000235614	ENSGT00940000159005.c.a.a.e.b.b	ENSGT00940000159005.c.a.b	ENSGT01010000222549	ENSGT00390000013443.c.i #22	ENSGT00940000159869 #23	ENSGT00940000160550 #24	ENSGT00940000175510	ENSGT00940000159788.a.a ##21	ENSGT00510000047770.c.a	ENSGT00940000160389	ENSGT00940000159313	ENSGT00940000161012	ENSGT00940000163288.a.b.b.b.a.a.a.a.s.b	ENSGT00940000157809.j.a.e.a	ENSGT00980000199049.B	ENSGT00940000163288.b	ENSGT00940000175631	ENSGT00940000157809.j.b	ENSGT00390000015916
Ballan wrasse	MODERN SPECIES	154	ENSLBEG00000021381	olfm2a (ENSLBEG00000021291)	trip10a (ENSLBEG00000021121)	ENSLBEG00000021025	ENSLBEG00000020983	ppan (ENSLBEG00000020897) #35	p2ry11 (ENSLBEG00000020886)	eif3g (ENSLBEG00000020866) #34	dnmt1 (ENSLBEG00000020786) #33	s1pr2 (ENSLBEG00000020755) #31	ENSLBEG00000020702	ENSLBEG00000020637	ENSLBEG00000020608	ENSLBEG00000020593	ENSLBEG00000020577	CDC37 (ENSLBEG00000020540) #22	ENSLBEG00000020504 #23
Eupecaria_B	ANCESTRAL SPECIES		ENSGT00940000154535.A	ENSGT00940000159148.a	ENSGT00950000183047.c.a.a	ENSGT00940000159005.c.a.a.e.b.a	ENSGT00940000155091.fb	ENSGT00940000160969 #36	ENSGT00530000064158 #35	ENSGT01030000234518.C.a.a	ENSGT00510000047802 #34	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #31	ENSGT00940000159005.c.a.a.e.a	ENSGT00940000159005.c.a.a.e.b.b	ENSGT00940000159005.c.a.b	ENSGT01010000222549	ENSGT00390000013443.c.i #22	ENSGT00940000159869 #23	ENSGT00940000160550 #24	ENSGT00940000159788.a.a ##21	ENSGT00510000047770.c.a	ENSGT00940000160389	ENSGT00940000159313	ENSGT00940000161012	ENSGT00940000163288.a.b.b.b.a.a.a.a.s.b.b	ENSGT00980000199049.A	ENSGT00940000157809.i	ENSGT00940000163288.a.b.b.b.a.a.a.a.s.a.b	ENSGT00940000157809.j.a.e.a	ENSGT00940000163288.a.b.b.b.a.a.a.a.s.b.a.a	ENSGT00940000163288.b	ENSGT00940000175631
Perciformes	ANCESTRAL SPECIES	1	ENSGT01000000214708.a.a	ENSGT00940000154535.A	ENSGT00940000159148.a	ENSGT00950000183047.c.a.a	ENSGT00940000159005.c.a.a.e.b.a	ENSGT00940000155091.fb	ENSGT00530000064158 #35	ENSGT01030000234518.C.a.a	ENSGT00510000047802 #34	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #31	ENSGT00940000159005.c.a.a.e.a	ENSGT00940000159005.c.a.a.e.b.b	ENSGT00940000159005.c.a.b	ENSGT01010000222549	ENSGT00390000013443.c.i #22	ENSGT00940000159869 #23	ENSGT00940000160550 #24	ENSGT00940000159788.a.a ##21	ENSGT00510000047770.c.a	ENSGT00940000160389	ENSGT00940000159313	ENSGT00940000161012	ENSGT00940000163288.a.b.b.b.a.a.a.a.s.b.b	ENSGT00980000199049.A	ENSGT00940000163288.a.b.b.b.a.a.a.a.s.b.a.a	ENSGT00940000157809.j.a.e.a	ENSGT00940000163288.a.b.b.b.a.a.a.a.s.a.b	ENSGT00390000015916	ENSGT00390000009825	ENSGT00940000156278
Perciformes_a	ANCESTRAL SPECIES	1	ENSGT01000000214708.a.a	ENSGT00940000154535.A	ENSGT00940000159148.a	ENSGT00950000183047.c.a.a	ENSGT00940000159005.c.a.a.e.b.a	ENSGT00940000155091.fb	ENSGT00530000064158 #35	ENSGT01030000234518.C.a.a	ENSGT00510000047802 #34	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #31	ENSGT00940000159005.c.a.a.e.a	ENSGT00940000159005.c.a.a.e.b.b	ENSGT00940000159005.c.a.b	ENSGT01010000222549	ENSGT00390000013443.c.i #22	ENSGT00940000159869 #23	ENSGT00940000160550 #24	ENSGT00940000159788.a.a ##21	ENSGT00510000047770.c.a	ENSGT00940000160389	ENSGT00940000159313	ENSGT00940000161012	ENSGT00940000163288.a.b.b.b.a.a.a.a.s.b.a.a	ENSGT00980000199049.A	ENSGT00390000015916	ENSGT00390000009825	ENSGT00940000156278	ENSGT00390000015579.a.a.b	ENSGT00390000009925.a	ENSGT00940000157696
Channel bull blenny	MODERN SPECIES	22	ENSCGOG00000010513	ENSCGOG00000010509	olfm2a (ENSCGOG00000010504)	trip10a (ENSCGOG00000010118)	ENSCGOG00000010103	ENSCGOG00000010040	ppan (ENSCGOG00000009912) #35	p2ry11 (ENSCGOG00000009903)	eif3g (ENSCGOG00000009871) #34	dnmt1 (ENSCGOG00000006723) #33	s1pr2 (ENSCGOG00000006643) #31	ENSCGOG00000006638	ENSCGOG00000006628	ENSCGOG00000006625	ENSCGOG00000006623	CDC37 (ENSCGOG00000006401) #22	TYK2 (ENSCGOG00000004966) #23	raver1 (ENSCGOG00000004897) #24	PDE4A (ENSCGOG00000004258) ##21	prkcsh (ENSCGOG00000004049)	elavl3 (ENSCGOG00000003892)	DOCK6 (ENSCGOG00000014862)	kank2 (ENSCGOG00000014808)	ENSCGOG00000014804	ENSCGOG00000014803	HBE1 (ENSCGOG00000014765)	ENSCGOG00000014764	ENSCGOG00000014763	ENSCGOG00000014762	ENSCGOG00000014746	ENSCGOG00000014743
Pike perch	MODERN SPECIES	27	col5a3a (ENSSLUG00000010775)	olfm2a (ENSSLUG00000010733)	trip10a (ENSSLUG00000009989)	ENSSLUG00000009948	ENSSLUG00000009943	ENSSLUG00000009940	ppan (ENSSLUG00000009926) #35	p2ry11 (ENSSLUG00000009918)	eif3g (ENSSLUG00000009895) #34	dnmt1 (ENSSLUG00000008937) #33	s1pr2 (ENSSLUG00000008878) #31	ENSSLUG00000008873	ENSSLUG00000008867	ENSSLUG00000008850	CMC4 (ENSSLUG00000008847)	CDC37 (ENSSLUG00000008844) #22	TYK2 (ENSSLUG00000008639) #23	raver1 (ENSSLUG00000008568) #24	PDE4A (ENSSLUG00000007353) ##21	prkcsh (ENSSLUG00000007214)	elavl3 (ENSSLUG00000007152)	DOCK6 (ENSSLUG00000001255)	kank2 (ENSSLUG00000000908)	ENSSLUG00000000905	ENSSLUG00000000902	ENSSLUG00000000900	ENSSLUG00000000899	ENSSLUG00000000890	hbbe1.2 (ENSSLUG00000000877)	ENSSLUG00000000862	nprl3 (ENSSLUG00000000837)
Cottioidei	ANCESTRAL SPECIES	1	ENSGT00940000164923.a.b	ENSGT00940000159038.a.b	ENSGT00940000159805	ENSGT00940000160236	ENSGT00940000162290	ENSGT00390000013997	ENSGT00530000064158 #35	ENSGT01030000234518.C.a.a	ENSGT00510000047802 #34	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #31	ENSGT00940000159005.c.a.a.e.a	ENSGT00940000159005.c.a.a.e.b.b	ENSGT00940000159005.c.a.b	ENSGT01010000222549	ENSGT00390000013443.c.i #22	ENSGT00940000159869 #23	ENSGT00940000160550 #24	ENSGT00940000159788.a.a ##21	ENSGT00510000047770.c.a	ENSGT00940000160389	ENSGT00940000159313	ENSGT00940000161012	ENSGT00940000163288.a.b.b.b.a.a.a.a.s.b.b	ENSGT00940000157809.j.a.e.a	ENSGT00940000163288.a.b.b.b.a.a.a.a.s.b.a.a	ENSGT00940000163288.a.b.b.b.a.a.a.a.s.a.b	ENSGT00390000015916	ENSGT00390000009825	ENSGT00940000156278	ENSGT00390000015579.a.a.b
Lumpfish	MODERN SPECIES	23	mylpfa (ENSCLMG00005022031)	tbc1d10b (ENSCLMG00005022030)	hsd3b7 (ENSCLMG00005022029)	ENSCLMG00005022028	ENSCLMG00005022027	ccdc47 (ENSCLMG00005021903)	ppan (ENSCLMG00005021899) #35	p2ry11 (ENSCLMG00005021898)	eif3g (ENSCLMG00005021897) #34	dnmt1 (ENSCLMG00005019760) #33	s1pr2 (ENSCLMG00005019718) #31	ENSCLMG00005019716	ENSCLMG00005019713	ENSCLMG00005019710	ENSCLMG00005019709	CDC37 (ENSCLMG00005019707) #22	TYK2 (ENSCLMG00005019369) #23	raver1 (ENSCLMG00005019363) #24	PDE4A (ENSCLMG00005019315) ##21	prkcsh (ENSCLMG00005019296)	elavl3 (ENSCLMG00005019269)	DOCK6 (ENSCLMG00005007984)	kank2 (ENSCLMG00005007859)	ENSCLMG00005007857	ENSCLMG00005007855	ENSCLMG00005007853	ENSCLMG00005007851	ENSCLMG00005007846	ENSCLMG00005007844	ENSCLMG00005007843	ENSCLMG00005007842
Stickleback	MODERN SPECIES	10	cd2bp2 (ENSGACG00000013628)	pheta2 (ENSGACG00000013634)	mylpfa (ENSGACG00000013640)	tbc1d10b (ENSGACG00000013672)	hsd3b7 (ENSGACG00000013673)	ENSGACG00000013688	ccdc47 (ENSGACG00000013694)	ppan (ENSGACG00000013723) #35	p2ry11 (ENSGACG00000013726)	eif3g (ENSGACG00000013727) #34	dnmt1 (ENSGACG00000013741) #33	s1pr2 (ENSGACG00000013760) #31	ENSGACG00000013762	sc:d0202 (ENSGACG00000013766)	ENSGACG00000013770	CDC37 (ENSGACG00000013773) #22	TYK2 (ENSGACG00000013787) #23	raver1 (ENSGACG00000013818) #24	PDE4A (ENSGACG00000013825) ##21	prkcsh (ENSGACG00000013828)	elavl3 (ENSGACG00000013839)	DOCK6 (ENSGACG00000013853)	kank2 (ENSGACG00000013864)	ENSGACG00000013869	HBE1 (ENSGACG00000013871)	ENSGACG00000013873	ENSGACG00000013876	ENSGACG00000013880	ENSGACG00000013882	ENSGACG00000013889	ENSGACG00000013891
Eupecaria_C	ANCESTRAL SPECIES	25	ENSGT00940000155412.a.a.a	ENSGT00940000154535.A	ENSGT00940000159148.a	ENSGT00950000183047.c.a.a	ENSGT00940000159005.c.a.a.e.b.a	ENSGT00940000160969 #36	ENSGT00530000064158 #35	ENSGT01030000234518.C.a.a	ENSGT00510000047802 #34	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #31	ENSGT00940000159005.c.a.a.e.a	ENSGT00940000159005.c.a.a.e.b.b	ENSGT00940000159005.c.a.b	ENSGT01010000222549	ENSGT00390000013443.c.i #22	ENSGT00940000159869 #23	ENSGT00940000160550 #24	ENSGT00940000159788.a.a ##21	ENSGT00510000047770.c.a	ENSGT00940000160389	ENSGT00940000159313	ENSGT00940000161012	ENSGT00940000163288.a.b.b.b.a.a.a.a.s.b.a.a	ENSGT00940000157809.i	ENSGT00940000163288.a.b.b.b.a.a.a.a.s.a.b	ENSGT00940000157809.j.a.e.a	ENSGT00940000163288.a.b.b.b.a.a.a.a.s.b.a.b	ENSGT00940000163288.a.a	ENSGT00940000163288.b	ENSGT00940000175631
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	23	ENSGT00940000155412.a.a.a	ENSGT00940000154535.A	ENSGT00940000159148.a	ENSGT00950000183047.c.a.a	ENSGT00940000159005.c.a.a.e.b.a	ENSGT00940000160969 #36	ENSGT00530000064158 #35	ENSGT01030000234518.C.a.a	ENSGT00510000047802 #34	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #31	ENSGT00940000159005.c.a.a.e.a	ENSGT00940000159005.c.a.a.e.b.b	ENSGT00940000159005.c.a.b	ENSGT01010000222549	ENSGT00390000013443.c.i #22	ENSGT00940000159869 #23	ENSGT00940000160550 #24	ENSGT00940000159788.a.a ##21	ENSGT00510000047770.c.a	ENSGT00940000160389	ENSGT00940000159313	ENSGT00940000161012	ENSGT00940000163288.a.b.b.b.a.a.a.a.s.b.a.a	ENSGT00390000015916	ENSGT00390000009825	ENSGT00940000156278	ENSGT00390000015579.a.a.b	ENSGT00390000009925.a	ENSGT00940000157696	ENSGT00550000075071
European seabass	MODERN SPECIES	21	nr5a5 (ENSDLAG00005016704)	ENSDLAG00005016710	ENSDLAG00005016716	notch3 (ENSDLAG00005016757)	rdh8a (ENSDLAG00005033050)	col5a3a (ENSDLAG00005017847)	olfm2a (ENSDLAG00005017987)	trip10a (ENSDLAG00005018006)	ENSDLAG00005018287	angptl6 (ENSDLAG00005018301) #36	ppan (ENSDLAG00005018327) #35	p2ry11 (ENSDLAG00005018413)	dnmt1 (ENSDLAG00005018520) #33	ENSDLAG00005020907	ENSDLAG00005020919	CDC37 (ENSDLAG00005020927) #22	TYK2 (ENSDLAG00005020950) #23	raver1 (ENSDLAG00005021412) #24	ENSDLAG00005021431 ##21	prkcsh (ENSDLAG00005021594)	elavl3 (ENSDLAG00005021675)	ENSDLAG00005034797	ENSDLAG00005022039	kank2 (ENSDLAG00005025242)	ENSDLAG00005033838	ENSDLAG00005030641	ENSDLAG00005025269	ENSDLAG00005027544	hbbe1.2 (ENSDLAG00005011248)	ENSDLAG00005029013	hbba1 (ENSDLAG00005028658)
Large yellow croaker	MODERN SPECIES	483	rdh8a (ENSLCRG00005006260)	col5a3a (ENSLCRG00005006221)	olfm2a (ENSLCRG00005006212)	trip10a (ENSLCRG00005005962)	ENSLCRG00005005955	ppan (ENSLCRG00005005944) #35	p2ry11 (ENSLCRG00005005942)	eif3g (ENSLCRG00005005940) #34	ENSLCRG00005005937	dnmt1 (ENSLCRG00005005368) #33	s1pr2 (ENSLCRG00005005356) #31	ENSLCRG00005005354	ENSLCRG00005005348	ENSLCRG00005005347	ENSLCRG00005005346	CDC37 (ENSLCRG00005005345) #22	TYK2 (ENSLCRG00005000887) #23	raver1 (ENSLCRG00005010063) #24	PDE4A (ENSLCRG00005010038) ##21	ENSLCRG00005010027	prkcsh (ENSLCRG00005009996)	elavl3 (ENSLCRG00005009964)	DOCK6 (ENSLCRG00005008920)	kank2 (ENSLCRG00005008892)	ENSLCRG00005008889	ENSLCRG00005008887	ENSLCRG00005008885	HBE1 (ENSLCRG00005008883)	HBE1 (ENSLCRG00005008880)	HBE1 (ENSLCRG00005008875)	HBE1 (ENSLCRG00005008871)
Gilthead seabream	MODERN SPECIES	15	col5a3a (ENSSAUG00010018793)	olfm2a (ENSSAUG00010018788)	trip10a (ENSSAUG00010018555)	ENSSAUG00010018545	ENSSAUG00010018542	ppan (ENSSAUG00010018514) #35	p2ry11 (ENSSAUG00010018512)	eif3g (ENSSAUG00010018509) #34	dnmt1 (ENSSAUG00010009735) #33	s1pr2 (ENSSAUG00010009638) #31	ENSSAUG00010009634	ENSSAUG00010009629	ENSSAUG00010009626	ENSSAUG00010009623	ENSSAUG00010009617	CDC37 (ENSSAUG00010009613) #22	TYK2 (ENSSAUG00010009414) #23	raver1 (ENSSAUG00010009410) #24	PDE4A (ENSSAUG00010009253) ##21	prkcsh (ENSSAUG00010009185)	elavl3 (ENSSAUG00010009102)	DOCK6 (ENSSAUG00010007094)	kank2 (ENSSAUG00010007076)	ENSSAUG00010007073	ENSSAUG00010007048	ENSSAUG00010007047	ENSSAUG00010007045	ENSSAUG00010007044	ENSSAUG00010007042	ENSSAUG00010007033	HBE1 (ENSSAUG00010007029)
Percomorphaceae_D	ANCESTRAL SPECIES	1	ENSGT00940000154535.A	ENSGT00940000159148.a	ENSGT00950000183047.c.a.a	ENSGT00940000159005.c.a.a.e.b.a	ENSGT00940000160969 #36	ENSGT00530000064158 #35	ENSGT01030000234518.C.a.a	ENSGT00510000047802 #34	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #31	ENSGT00940000159005.c.a.a.e.a	ENSGT00940000159005.d	ENSGT00940000159005.c.a.a.e.b.b	ENSGT00940000159005.c.a.b	ENSGT01010000222549	ENSGT00390000013443.c.i #22	ENSGT00940000159869 #23	ENSGT00940000160550 #24	ENSGT00940000159788.a.a ##21	ENSGT00510000047770.c.a	ENSGT00940000160389	ENSGT00940000159313	ENSGT00940000161012	ENSGT00940000163288.a.b.b.b.a.a.a.a.s.b	ENSGT00940000157809.j.a.e.a	ENSGT00980000199049.B	ENSGT00940000163288.a.a	ENSGT00940000175631	ENSGT00940000157809.i	ENSGT00940000163288.a.b.b.b.a.a.a.a.t	ENSGT00940000163288.b
Anabantaria	ANCESTRAL SPECIES	6	ENSGT00940000154535.A	ENSGT00940000159148.a	ENSGT00950000183047.c.a.a	ENSGT00940000159005.c.a.a.e.b.a	ENSGT00940000155091.fb	ENSGT00940000160969 #36	ENSGT00530000064158 #35	ENSGT01030000234518.C.a.a	ENSGT00510000047802 #34	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #31	ENSGT00940000159005.c.a.a.e.a	ENSGT00940000159005.c.a.a.e.b.b	ENSGT00940000159005.c.a.b	ENSGT01010000222549	ENSGT00390000013443.c.i #22	ENSGT00940000159869 #23	ENSGT00940000160550 #24	ENSGT00940000159788.a.a ##21	ENSGT00510000047770.c.a	ENSGT00940000160389	ENSGT00940000159313	ENSGT00940000161012	ENSGT00940000163288.a.b.b.b.a.a.a.a.t.a	ENSGT00940000163288.b	ENSGT00940000175631	ENSGT00940000157809.j.b	ENSGT00940000157809.i	ENSGT00940000163288.a.b.b.b.a.a.a.a.t.b	ENSGT00390000015916	ENSGT00390000009825
Anabantoidei	ANCESTRAL SPECIES	7	ENSGT00940000155412.a.a.a	ENSGT00940000154535.A	ENSGT00940000159148.a	ENSGT00950000183047.c.a.a	ENSGT00940000159005.c.a.a.e.b.a	ENSGT00940000160969 #36	ENSGT00530000064158 #35	ENSGT01030000234518.C.a.a	ENSGT00510000047802 #34	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #31	ENSGT00940000159005.c.a.a.e.a	ENSGT00940000159005.c.a.a.e.b.b	ENSGT00940000159005.c.a.b	ENSGT01010000222549	ENSGT00390000013443.c.i #22	ENSGT00940000159869 #23	ENSGT00940000160550 #24	ENSGT00940000159788.a.a ##21	ENSGT00510000047770.c.a	ENSGT00940000160389	ENSGT00940000159313	ENSGT00940000161012	ENSGT00940000163288.a.b.b.b.a.a.a.a.t.a	ENSGT00940000163288.b	ENSGT00940000175631	ENSGT00940000157809.j.b	ENSGT00940000157809.i	ENSGT00940000163288.a.b.b.b.a.a.a.a.t.b	ENSGT00390000015916	ENSGT00390000009825
Climbing perch	MODERN SPECIES	21	col5a3a (ENSATEG00000021340)	olfm2a (ENSATEG00000021321)	trip10a (ENSATEG00000021289)	ENSATEG00000021255	ENSATEG00000021239	ppan (ENSATEG00000021221) #35	p2ry11 (ENSATEG00000021211)	eif3g (ENSATEG00000021200) #34	dnmt1 (ENSATEG00000021176) #33	s1pr2 (ENSATEG00000021169) #31	ENSATEG00000021135	ENSATEG00000021107	ENSATEG00000021100	ENSATEG00000021095	ENSATEG00000021090	ENSATEG00000021078 #22	ENSATEG00000021035 #23	ENSATEG00000021004 ##21	prkcsh (ENSATEG00000020962)	elavl3 (ENSATEG00000020941)	ENSATEG00000020845	kank2 (ENSATEG00000020806)	ENSATEG00000029715	ENSATEG00000026131	ENSATEG00000030119	ENSATEG00000026224	ENSATEG00000027729	ENSATEG00000017307	ENSATEG00000029846	ENSATEG00000028187	ENSATEG00000012464
Siamese fighting fish	MODERN SPECIES	19	col5a3a (ENSBSLG00000011791)	olfm2a (ENSBSLG00000013141)	trip10a (ENSBSLG00000013370)	ENSBSLG00000013877	angptl6 (ENSBSLG00000013884) #36	ppan (ENSBSLG00000013988) #35	p2ry11 (ENSBSLG00000013996)	eif3g (ENSBSLG00000013997) #34	dnmt1 (ENSBSLG00000014235) #33	s1pr2 (ENSBSLG00000016221) #31	ENSBSLG00000016225	ENSBSLG00000016630	ENSBSLG00000016736	ENSBSLG00000016898	ENSBSLG00000017006	CDC37 (ENSBSLG00000017043) #22	TYK2 (ENSBSLG00000017161) #23	raver1 (ENSBSLG00000018079) #24	PDE4A (ENSBSLG00000018235) ##21	prkcsh (ENSBSLG00000018650)	elavl3 (ENSBSLG00000018664)	DOCK6 (ENSBSLG00000018753)	ENSBSLG00000019844	kank2 (ENSBSLG00000019862)	ENSBSLG00000019887	HBE1 (ENSBSLG00000019982)	ENSBSLG00000019994	ENSBSLG00000020013	ENSBSLG00000020027	HBE1 (ENSBSLG00000020060)	ENSBSLG00000020068
Zig-zag eel	MODERN SPECIES	22	notch3 (ENSMAMG00000012868)	rdh8a (ENSMAMG00000012845)	col5a3a (ENSMAMG00000012693)	olfm2a (ENSMAMG00000012664)	trip10a (ENSMAMG00000012628)	ENSMAMG00000012602	angptl6 (ENSMAMG00000012592) #36	eif3g (ENSMAMG00000012435) #34	ENSMAMG00000012426	ppan (ENSMAMG00000012418) #35	dnmt1 (ENSMAMG00000012342) #33	ENSMAMG00000012322 #31	ENSMAMG00000012288	ENSMAMG00000012276	ENSMAMG00000028453	CDC37 (ENSMAMG00000012251) #22	TYK2 (ENSMAMG00000012164) #23	raver1 (ENSMAMG00000012059) #24	ENSMAMG00000011754 ##21	prkcsh (ENSMAMG00000011721)	elavl3 (ENSMAMG00000011697)	ENSMAMG00000011641	kank2 (ENSMAMG00000011625)	ENSMAMG00000028436	ENSMAMG00000025469	ENSMAMG00000025801	ENSMAMG00000026041	ENSMAMG00000008150	ENSMAMG00000026751	ENSMAMG00000026908	ENSMAMG00000003299
Carangaria	ANCESTRAL SPECIES	4	ENSGT00940000154535.A	ENSGT00940000159148.a	ENSGT00950000183047.c.a.a	ENSGT00940000159005.c.a.a.e.b.a	ENSGT00940000160969 #36	ENSGT00530000064158 #35	ENSGT01030000234518.C.a.a	ENSGT00510000047802 #34	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #31	ENSGT00940000159005.c.a.a.e.a	ENSGT00940000159005.d	ENSGT00940000159005.c.a.a.e.b.b	ENSGT00940000159005.c.a.b	ENSGT01010000222549	ENSGT00390000013443.c.i #22	ENSGT00940000159869 #23	ENSGT00940000160550 #24	ENSGT00940000159788.a.a ##21	ENSGT00510000047770.c.a	ENSGT00940000160389	ENSGT00940000159313	ENSGT00940000161012	ENSGT00940000163288.a.b.b.b.a.a.a.a.s.b	ENSGT00940000157809.j.a.e.a	ENSGT00940000163288.a.a	ENSGT00940000163288.b	ENSGT00940000175631	ENSGT00940000157809.j.b	ENSGT00940000157809.i	ENSGT00940000163288.a.b.b.b.a.a.a.a.t
Pleuronectoidei	ANCESTRAL SPECIES	2	ENSGT00940000154535.A	ENSGT00940000159148.a	ENSGT00950000183047.c.a.a	ENSGT00940000159005.c.a.a.e.b.a	ENSGT00940000155091.fb	ENSGT00940000160969 #36	ENSGT00530000064158 #35	ENSGT01030000234518.C.a.a	ENSGT00510000047802 #34	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #31	ENSGT00940000159005.c.a.a.e.a	ENSGT00940000159005.c.a.a.e.b.b	ENSGT00940000159005.c.a.b	ENSGT01010000222549	ENSGT00390000013443.c.i #22	ENSGT00940000159869 #23	ENSGT00940000160550 #24	ENSGT00940000159788.a.a ##21	ENSGT00510000047770.c.a	ENSGT00940000160389	ENSGT00940000159313	ENSGT00940000161012	ENSGT00940000163288.a.b.b.b.a.a.a.a.s.b	ENSGT00940000163288.a.b.b.b.a.a.a.a.t	ENSGT00390000015916	ENSGT00390000009825	ENSGT00940000156278	ENSGT00390000015579.a.a.b	ENSGT00390000009925.a	ENSGT00940000157696
Turbot	MODERN SPECIES	10	rdh8a (ENSSMAG00000003649)	col5a3a (ENSSMAG00000003678)	olfm2a (ENSSMAG00000003975)	trip10a (ENSSMAG00000004005)	ENSSMAG00000004075	ENSSMAG00000004089	ppan (ENSSMAG00000004098) #35	p2ry11 (ENSSMAG00000004114)	eif3g (ENSSMAG00000004122) #34	dnmt1 (ENSSMAG00000004135) #33	s1pr2 (ENSSMAG00000004201) #31	ENSSMAG00000004215	ENSSMAG00000004370	ENSSMAG00000004401	ENSSMAG00000004422	CDC37 (ENSSMAG00000004453) #22	TYK2 (ENSSMAG00000004461) #23	raver1 (ENSSMAG00000004546) #24	ENSSMAG00000004595 ##21	ENSSMAG00000004579	prkcsh (ENSSMAG00000004614)	elavl3 (ENSSMAG00000004671)	ENSSMAG00000004699	kank2 (ENSSMAG00000004799)	ENSSMAG00000038005	ENSSMAG00000037172	hbbe1.2 (ENSSMAG00000004825)	ENSSMAG00000029726	ENSSMAG00000004847	nprl3 (ENSSMAG00000004856)	mpg (ENSSMAG00000004903)
Tongue sole	MODERN SPECIES	8	ppl (ENSCSEG00000020915)	glyr1 (ENSCSEG00000020917)	rogdi (ENSCSEG00000021004)	ENSCSEG00000021006	trip10a (ENSCSEG00000021009)	ENSCSEG00000021015	angptl6 (ENSCSEG00000021019) #36	ppan (ENSCSEG00000021023) #35	p2ry11 (ENSCSEG00000021025)	eif3g (ENSCSEG00000021026) #34	dnmt1 (ENSCSEG00000021029) #33	s1pr2 (ENSCSEG00000021083) #31	ENSCSEG00000021084	ENSCSEG00000021085	TYK2 (ENSCSEG00000021087) #23	CDC37 (ENSCSEG00000021091) #22	raver1 (ENSCSEG00000021092) #24	PDE4A (ENSCSEG00000021093) ##21	prkcsh (ENSCSEG00000021094)	elavl3 (ENSCSEG00000021095)	DOCK6 (ENSCSEG00000021096)	ENSCSEG00000021097	ENSCSEG00000021098	ENSCSEG00000021099	ENSCSEG00000021100	ENSCSEG00000021101	ENSCSEG00000021103	nprl3 (ENSCSEG00000021105)	mpg (ENSCSEG00000021106)	ENSCSEG00000021107	rhbdf1a (ENSCSEG00000021187)
Carangaria_A	ANCESTRAL SPECIES	28	ENSGT00940000159148.a	ENSGT00950000183047.c.a.a	ENSGT00940000159005.c.a.a.e.b.a	ENSGT00940000160969 #36	ENSGT00940000155091.fb	ENSGT00530000064158 #35	ENSGT01030000234518.C.a.a	ENSGT00510000047802 #34	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #31	ENSGT00940000159005.c.a.a.e.a	ENSGT00940000159005.d	ENSGT00940000159005.c.a.a.e.b.b	ENSGT00940000159005.c.a.b	ENSGT01010000222549	ENSGT00390000013443.c.i #22	ENSGT00940000159869 #23	ENSGT00940000160550 #24	ENSGT00940000159788.a.a ##21	ENSGT00510000047770.c.a	ENSGT00940000160389	ENSGT00940000159313	ENSGT00940000161012	ENSGT00940000163288.a.b.b.b.a.a.a.a.s.b	ENSGT00940000157809.j.a.e.a	ENSGT00940000163288.a.a	ENSGT00940000163288.b	ENSGT00940000175631	ENSGT00940000157809.j.b	ENSGT00390000015916	ENSGT00390000009825
Barramundi perch	MODERN SPECIES	158	notch3 (ENSLCAG00010025861)	rdh8a (ENSLCAG00010025902)	ENSLCAG00010025905	ENSLCAG00010025913	olfm2a (ENSLCAG00010025917)	trip10a (ENSLCAG00010025921)	ENSLCAG00010025930	ENSLCAG00010025938	ppan (ENSLCAG00010025941) #35	p2ry11 (ENSLCAG00010025943)	eif3g (ENSLCAG00010025948) #34	dnmt1 (ENSLCAG00010025990) #33	s1pr2 (ENSLCAG00010026142) #31	ENSLCAG00010000138	ENSLCAG00010000142	CDC37 (ENSLCAG00010000148) #22	ENSLCAG00010000156	ENSLCAG00010000158	TYK2 (ENSLCAG00010000914) #23	raver1 (ENSLCAG00010002334) #24	PDE4A (ENSLCAG00010002355) ##21	prkcsh (ENSLCAG00010002382)	elavl3 (ENSLCAG00010002389)	DOCK6 (ENSLCAG00010002420)	kank2 (ENSLCAG00010002457)	ENSLCAG00010002461	ENSLCAG00010002468	ENSLCAG00010002480	ENSLCAG00010002483	hbba1 (ENSLCAG00010002488)	ENSLCAG00010002503
Seriola	ANCESTRAL SPECIES	15	ENSGT00940000165096.b.a	ENSGT00940000164958.b	ENSGT01090000260293	ENSGT00940000155556.c	ENSGT00940000157100.b	ENSGT00530000064158 #35	ENSGT01030000234518.C.a.a	ENSGT00510000047802 #34	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #31	ENSGT00940000159005.c.a.a.e.a	ENSGT00940000159005.d	ENSGT00940000159005.c.a.a.e.b.b	ENSGT00940000159005.c.a.b	ENSGT01010000222549	ENSGT00390000013443.c.i #22	ENSGT00940000159869 #23	ENSGT00940000160550 #24	ENSGT00940000159788.a.a ##21	ENSGT00510000047770.c.a	ENSGT00940000160389	ENSGT00940000159313	ENSGT00940000161012	ENSGT00940000163288.a.b.b.b.a.a.a.a.s.b.d	ENSGT00940000157809.j.a.e.a.hb	ENSGT00940000163288.b	ENSGT00940000175631	ENSGT00940000157809.i	ENSGT00940000163288.a.b.b.b.a.a.a.a.s.b.c	ENSGT00940000157809.j.a.e.a.ib	ENSGT00940000163288.a.a
Greater amberjack	MODERN SPECIES	17	ENSSDUG00000021493	ENSSDUG00000021456	ENSSDUG00000021451	ENSSDUG00000021434	dhrs7ca (ENSSDUG00000021343)	ppan (ENSSDUG00000021301) #35	p2ry11 (ENSSDUG00000021298)	eif3g (ENSSDUG00000021286) #34	dnmt1 (ENSSDUG00000021243) #33	s1pr2 (ENSSDUG00000021236) #31	ENSSDUG00000021224	ENSSDUG00000021215	ENSSDUG00000021194	ENSSDUG00000021184	ENSSDUG00000021179	CDC37 (ENSSDUG00000021164) #22	TYK2 (ENSSDUG00000021116) #23	raver1 (ENSSDUG00000021063) #24	PDE4A (ENSSDUG00000020801) ##21	prkcsh (ENSSDUG00000020715)	elavl3 (ENSSDUG00000020708)	DOCK6 (ENSSDUG00000020632)	kank2 (ENSSDUG00000020607)	ENSSDUG00000020601	ENSSDUG00000020591	ENSSDUG00000020587	ENSSDUG00000020577	ENSSDUG00000020572	ENSSDUG00000020561	HBE1 (ENSSDUG00000020556)	ENSSDUG00000020550
Yellowtail amberjack	MODERN SPECIES	2918	ENSSLDG00000016196	ENSSLDG00000016175	ENSSLDG00000016151	dhrs7ca (ENSSLDG00000016136)	ppan (ENSSLDG00000016106) #35	p2ry11 (ENSSLDG00000016092)	eif3g (ENSSLDG00000016076) #34	dnmt1 (ENSSLDG00000014902) #33	s1pr2 (ENSSLDG00000014695) #31	ENSSLDG00000014682	ENSSLDG00000014669	ENSSLDG00000014656	ENSSLDG00000014633	ENSSLDG00000014609	ENSSLDG00000014595	CDC37 (ENSSLDG00000014585) #22	TYK2 (ENSSLDG00000014535) #23	raver1 (ENSSLDG00000014505) #24	PDE4A (ENSSLDG00000014021) ##21	prkcsh (ENSSLDG00000013848)	elavl3 (ENSSLDG00000013769)	DOCK6 (ENSSLDG00000013575)	kank2 (ENSSLDG00000013495)	ENSSLDG00000013479	HBE1 (ENSSLDG00000013465)	hbba2 (ENSSLDG00000013379)	HBE1 (ENSSLDG00000012884)	ENSSLDG00000012470	ENSSLDG00000012412	ENSSLDG00000012397	ENSSLDG00000011483
Tiger tail seahorse	MODERN SPECIES	248	ENSHCOG00000016840	olfm2a (ENSHCOG00000016835)	trip10a (ENSHCOG00000016817)	ENSHCOG00000016793	ENSHCOG00000016779	angptl6 (ENSHCOG00000016769) #36	ppan (ENSHCOG00000016751) #35	eif3g (ENSHCOG00000016649) #34	dnmt1 (ENSHCOG00000016624) #33	s1pr2 (ENSHCOG00000016560) #31	ENSHCOG00000016553	ENSHCOG00000016529	sc:d0202 (ENSHCOG00000016522)	ENSHCOG00000016514	ENSHCOG00000016506	CDC37 (ENSHCOG00000016498) #22	TYK2 (ENSHCOG00000016457) #23	raver1 (ENSHCOG00000000449) #24	ENSHCOG00000015948	PDE4A (ENSHCOG00000015939) ##21	prkcsh (ENSHCOG00000015903)	elavl3 (ENSHCOG00000015894)	DOCK6 (ENSHCOG00000015850)	ENSHCOG00000015777	kank2 (ENSHCOG00000015769)	ENSHCOG00000015760	shisa9b (ENSHCOG00000015744)	IGFALS (ENSHCOG00000015741)	UNKL (ENSHCOG00000015734)	gper1 (ENSHCOG00000015685)	ENSHCOG00000015676
Pinecone sodierfish	MODERN SPECIES	22	olfm2a (ENSMMDG00005023973)	trip10a (ENSMMDG00005023987)	ENSMMDG00005024154	ENSMMDG00005024157	ENSMMDG00005024161	ppan (ENSMMDG00005000294) #35	p2ry11 (ENSMMDG00005000316)	eif3g (ENSMMDG00005000323) #34	dnmt1 (ENSMMDG00005000480) #33	s1pr2 (ENSMMDG00005000950) #31	ENSMMDG00005000951	ENSMMDG00005000952	ENSMMDG00005000955	ENSMMDG00005000967	ENSMMDG00005000969	CDC37 (ENSMMDG00005000971) #22	TYK2 (ENSMMDG00005001084) #23	raver1 (ENSMMDG00005009513) #24	ENSMMDG00005009515	PDE4A (ENSMMDG00005009519) ##21	prkcsh (ENSMMDG00005009530)	elavl3 (ENSMMDG00005009542)	DOCK6 (ENSMMDG00005010229)	ENSMMDG00005022272	kank2 (ENSMMDG00005022274)	hbae3 (ENSMMDG00005022276)	HBE1 (ENSMMDG00005022280)	ENSMMDG00005022282	ENSMMDG00005022285	ENSMMDG00005022287	ENSMMDG00005022289
Protacanthopterygii	ANCESTRAL SPECIES	5	ENSGT00940000160234.a.a	ENSGT00940000155412.a.a.a	ENSGT01000000214708.a.a	ENSGT00940000154535.A	ENSGT00940000159148.a	ENSGT00950000183047.c.a.a	ENSGT00970000195776	ENSGT00940000155091.fb	ENSGT00530000064158 #35	ENSGT01030000234518.C.a.a	ENSGT00510000047802 #34	ENSGT00390000005100.f #33	ENSGT01050000244887.A.a.a.b #31	ENSGT00940000159005.c.a.a.e.a.a	ENSGT00940000159005.c.a.b	ENSGT00390000013443.c.i #22	ENSGT00940000159869 #23	ENSGT00940000160550 #24	ENSGT00940000159788.a.a ##21	ENSGT00510000047770.c.a	ENSGT00940000160389	ENSGT00770000121797	ENSGT00940000159313	ENSGT00940000161012	ENSGT00940000157809.j.a.e.a.wb	ENSGT00940000163288.a.b.b.b.a.a.a.a	ENSGT00940000157809.j.a.e.a.vb.b	ENSGT00940000163288.a.b.b.b.a.a.a.b.a	ENSGT00940000157809.j.a.f	ENSGT00940000157809.j.a.e.a.vb.a	ENSGT00940000157809.j.b
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	193	ENSGT00950000183047.c.a.a.d	ENSGT00940000159005.c.a.a.e.a.a.a.a.a	ENSGT00940000155091.fb.b	ENSGT00940000159005.c.a.a.e.a.a.b	ENSGT00940000155091.fb.a	ENSGT00530000064158.c.b #35	ENSGT00940000160969 #36	ENSGT00530000064158.c.a #35	ENSGT01030000234518.C.a.a	ENSGT00530000064158.d #35	ENSGT00510000047802 #34	ENSGT00390000005100.f.a #33	ENSGT01050000244887.A.a.a.b #31	ENSGT00940000159005.c.a.a.e.a.a.a.a.b.b.a.a	ENSGT00940000159005.c.a.b.c.b	ENSGT00390000013443.c.i.a #22	ENSGT00940000159869 #23	ENSGT00940000160550.c #24	ENSGT00940000159788.a.a.c ##21	ENSGT00510000047770.c.a	ENSGT00940000160389.b	ENSGT00940000159313	ENSGT00940000161012.q.b	ENSGT00940000163288.a.b.b.b.a.a.a.b.a.a.a	ENSGT00940000157809.j.a.e.a.vb.b.b	ENSGT00940000163288.a.b.b.b.a.a.a.b.a.b.b	ENSGT00940000157809.j.a.f	ENSGT00940000163288.a.b.b.b.a.a.a.a.n	ENSGT00940000157809.j.a.e.a.vb.a	ENSGT00940000163288.a.b.b.b.a.a.a.a.m.a	ENSGT00940000163288.a.b.b.a.o
Salmoninae_a	ANCESTRAL SPECIES	99										ENSGT00530000064158.d #35	ENSGT00510000047802.h.b.a #34	ENSGT00390000005100.f.a #33	ENSGT01050000244887.A.a.a.b.d #31	ENSGT00940000159005.c.a.a.e.a.a.a.a.b.b.a.a	ENSGT00940000159005.c.a.b.c.b	ENSGT00390000013443.c.i.a #22	ENSGT00940000159869.f #23	ENSGT00940000160550.c #24	ENSGT00940000159788.a.a.c ##21	ENSGT00510000047770.c.a	ENSGT00940000160389.b	ENSGT00770000121797	ENSGT00940000160389.a.b	ENSGT00940000159313.m.a	ENSGT00940000161012.q.b	ENSGT00940000163288.a.b.b.b.a.a.a.b.a.a.a	ENSGT00940000157809.j.a.e.a.vb.b.b	ENSGT00940000163288.a.b.b.b.a.a.a.b.a.b.b	ENSGT00940000157809.j.a.f	ENSGT00940000157809.j.a.e.a.vb.a.a.b	ENSGT00940000163288.a.b.b.b.a.a.a.a.n.a
Salmo	ANCESTRAL SPECIES	53	ENSGT00940000154615.i.b.f	ENSGT00940000160234.a.a.a.a	ENSGT00940000155412.a.a.a.a	ENSGT00940000154535.A	ENSGT00940000159148.a.b	ENSGT00950000183047.c.a.a.d	ENSGT00940000159005.c.a.a.e.a.a.a.a.a.a	ENSGT00940000155091.fb.a	ENSGT00530000064158.c.b #35	ENSGT01100000263537.b.a.b.f	ENSGT00510000047802.g #34	ENSGT00390000005100.f.a #33	ENSGT01050000244887.A.a.a.b.d #31	ENSGT00940000159005.c.a.a.e.a.a.a.a.b.a	ENSGT00940000159005.c.a.b.c.b	ENSGT00390000013443.c.i.a #22	ENSGT00940000159869.f #23	ENSGT00940000160550.c #24	ENSGT00940000159788.a.a.d ##21	ENSGT00510000047770.c.a.e
River trout	MODERN SPECIES		ENSSTUG00000018685	MFAP4 (ENSSTUG00000018667)	notch3 (ENSSTUG00000015211)	rdh8a (ENSSTUG00000015081)	ENSSTUG00000015072	ENSSTUG00000015068	ENSSTUG00000014083	ENSSTUG00000014053	ppan (ENSSTUG00000014001) #35	ENSSTUG00000013997	eif3g (ENSSTUG00000013949) #34	dnmt1 (ENSSTUG00000013646) #33	s1pr2 (ENSSTUG00000013628) #31	ENSSTUG00000013620	ENSSTUG00000013612	CDC37 (ENSSTUG00000013583) #22	TYK2 (ENSSTUG00000007665) #23	raver1 (ENSSTUG00000007500) #24	PDE4A (ENSSTUG00000006652) ##21	prkcsh (ENSSTUG00000006571)	elavl3 (ENSSTUG00000006478)	ENSSTUG00000006470	DOCK6 (ENSSTUG00000002025)	kank2 (ENSSTUG00000001830)	ENSSTUG00000001803	hbae3 (ENSSTUG00000001788)	ENSSTUG00000001782	ENSSTUG00000001774	ENSSTUG00000001750	HBE1 (ENSSTUG00000001741)	ENSSTUG00000001727
Atlantic salmon	MODERN SPECIES	25	ENSSSAG00000045054	notch3 (ENSSSAG00000042839)	rdh8a (ENSSSAG00000042762)	col5a3a (ENSSSAG00000101086)	olfm2a (ENSSSAG00000042645)	trip10a (ENSSSAG00000038408)	ENSSSAG00000102397	ENSSSAG00000012159	ppan (ENSSSAG00000011597) #35	P2Y11 (ENSSSAG00000011463)	eif3g (ENSSSAG00000010991) #34	dnmt1 (ENSSSAG00000002838) #33	s1pr2 (ENSSSAG00000110895) #31	ENSSSAG00000094904	ENSSSAG00000101791	CDC37 (ENSSSAG00000063677) #22	TYK2 (ENSSSAG00000062585) #23	raver1 (ENSSSAG00000096191) #24	ENSSSAG00000115461 ##21	prkcsh (ENSSSAG00000061213)	elavl3 (ENSSSAG00000088763)	ENSSSAG00000039972	kank2 (ENSSSAG00000044677)	ENSSSAG00000044911	ENSSSAG00000093579	ENSSSAG00000065398	ENSSSAG00000044836	ENSSSAG00000087487	ENSSSAG00000119552	HBA4 (ENSSSAG00000017138)	ENSSSAG00000102409
Oncorhynchus	ANCESTRAL SPECIES	37	ENSGT00940000154615.i.b.f.f.a	ENSGT00940000160234.a.a.b.a	ENSGT00940000155412.a.a.a.a.d	ENSGT00940000154535.A	ENSGT00940000159148.a.b	ENSGT00950000183047.c.a.a.d	ENSGT00940000159005.c.a.a.e.a.a.a.a.a.b	ENSGT00940000155091.fb.b	ENSGT00530000064158.c.b #35	ENSGT01100000263537.b.a.b.f.b	ENSGT00510000047802.h.b.a.a #34	ENSGT00390000005100.f.a #33	ENSGT01050000244887.A.a.a.b.d #31	ENSGT00940000159005.c.a.a.e.a.a.a.a.b.b.a.a	ENSGT00940000159005.c.a.b.c.b	ENSGT00390000013443.c.i.a #22	ENSGT00940000159869.f #23	ENSGT00940000160550.c #24	ENSGT00940000159788.a.a.c ##21	ENSGT00510000047770.c.a.h	ENSGT00940000160389.a.a	ENSGT00770000121797	ENSGT00940000160389.a.b	ENSGT00940000159313.m.a
Oncorhynchus_a	ANCESTRAL SPECIES	42					ENSGT00940000159148.a.a	ENSGT00950000183047.c.a.a.c.a	ENSGT00940000155091.fb.b	ENSGT00530000064158.c.b #35	ENSGT01100000263537.b.a.b.f.b	ENSGT00510000047802.h.b.a.a #34	ENSGT00390000005100.f.a #33	ENSGT01050000244887.A.a.a.b.d #31	ENSGT00940000159005.c.a.a.e.a.a.a.a.b.b.a.a.d	ENSGT00940000159005.c.a.a.e.a.a.a.a.b.b.a.a.c	ENSGT00940000159005.c.a.b.c.b	ENSGT00390000013443.c.i.a #22	ENSGT00940000159869.f #23	ENSGT00940000160550.c #24	ENSGT00940000159788.a.a.c ##21	ENSGT00510000047770.c.a.h	ENSGT00940000160389.a.a	ENSGT00940000159313.m.b	ENSGT00940000161012.q.a	ENSGT00770000121797	ENSGT00940000160389.a.b	ENSGT00940000159313.m.a	ENSGT00940000161012.q.b	ENSGT00940000161012.r	ENSGT00940000163288.a.b.b.b.a.a.a.b.a.a.b.b	ENSGT00940000157809.j.a.e.a.vb.b.b	ENSGT00940000163288.a.b.b.b.a.a.a.b.a.b.b.c
Coho salmon	MODERN SPECIES	1	ENSOKIG00005004439	MFAP4 (ENSOKIG00005004410)	notch3 (ENSOKIG00005002709)	rdh8a (ENSOKIG00005002414)	col5a3a (ENSOKIG00005002404)	olfm2a (ENSOKIG00005002391)	trip10a (ENSOKIG00005002365)	ENSOKIG00005002343	ENSOKIG00005002335	ppan (ENSOKIG00005002316) #35	ENSOKIG00005002308	eif3g (ENSOKIG00005002268) #34	dnmt1 (ENSOKIG00005002092) #33	ENSOKIG00005001950	ENSOKIG00005031397	CDC37 (ENSOKIG00005031312) #22	TYK2 (ENSOKIG00005029215) #23	raver1 (ENSOKIG00005029083) #24	PDE4A (ENSOKIG00005028970) ##21	prkcsh (ENSOKIG00005028860)	elavl3 (ENSOKIG00005028738)	DOCK6 (ENSOKIG00005026944)	kank2 (ENSOKIG00005026805)	hbae3 (ENSOKIG00005026782)	HBE1 (ENSOKIG00005026771)	ENSOKIG00005026762	ENSOKIG00005026751	ENSOKIG00005026731	HBE1 (ENSOKIG00005026724)	ENSOKIG00005026711	ENSOKIG00005026701
Chinook salmon	MODERN SPECIES	19	ARL4D (ENSOTSG00005026396)	ENSOTSG00005026392	NBR1 (ENSOTSG00005026389)	rdh8a (ENSOTSG00005026387)	olfm2a (ENSOTSG00005026386)	trip10a (ENSOTSG00005026331)	ENSOTSG00005026326	ppan (ENSOTSG00005026309) #35	ENSOTSG00005026308	eif3g (ENSOTSG00005026303) #34	dnmt1 (ENSOTSG00005026125) #33	s1pr2 (ENSOTSG00005026121) #31	ENSOTSG00005026118	ENSOTSG00005026117	ENSOTSG00005026114	CDC37 (ENSOTSG00005026109) #22	TYK2 (ENSOTSG00005018870) #23	raver1 (ENSOTSG00005018788) #24	PDE4A (ENSOTSG00005018718) ##21	prkcsh (ENSOTSG00005018706)	elavl3 (ENSOTSG00005018700)	ENSOTSG00005018696	DOCK6 (ENSOTSG00005003329)	ENSOTSG00005002997	ENSOTSG00005002819	ENSOTSG00005002654	hbae3 (ENSOTSG00005031980)	ENSOTSG00005031978	ENSOTSG00005031977	ENSOTSG00005031975	ENSOTSG00005031976
Rainbow trout	MODERN SPECIES	4	ENSOMYG00000042768	ENSOMYG00000042761	notch3 (ENSOMYG00000042475)	rdh8a (ENSOMYG00000042369)	ENSOMYG00000068280	olfm2a (ENSOMYG00000064443)	trip10a (ENSOMYG00000042358)	ENSOMYG00000042341	ENSOMYG00000042329	ppan (ENSOMYG00000042316) #35	eif3g (ENSOMYG00000042301) #34	dnmt1 (ENSOMYG00000041796) #33	s1pr2 (ENSOMYG00000041703) #31	ENSOMYG00000041696	ENSOMYG00000041686	ENSOMYG00000041679 #22	ENSOMYG00000071425	ENSOMYG00000040007 #23	raver1 (ENSOMYG00000039655) #24	ENSOMYG00000053730	ENSOMYG00000038887 ##21	prkcsh (ENSOMYG00000038545)	elavl3 (ENSOMYG00000038461)	ENSOMYG00000035983	kank2 (ENSOMYG00000035539)	hbae3 (ENSOMYG00000035531)	ENSOMYG00000035530	ENSOMYG00000035525	ENSOMYG00000035520	ENSOMYG00000035512	ENSOMYG00000035506
Huchen	MODERN SPECIES	3565											ENSHHUG00000039858	ENSHHUG00000039852	ENSHHUG00000039848	ENSHHUG00000039833	ENSHHUG00000039820	CDC37 (ENSHHUG00000039796) #22	TYK2 (ENSHHUG00000038939) #23	raver1 (ENSHHUG00000038887) #24	ENSHHUG00000038885
Salmoninae	ANCESTRAL SPECIES	1394														ENSGT00940000159005.c.a.a.e.a.a.a.b.b	ENSGT00940000159005.c.a.b.c.a	ENSGT00390000013443.c.i.b #22
Salmoninae_a	ANCESTRAL SPECIES	137	ENSGT00940000159148.a.a	ENSGT00950000183047.c.a.a.c	ENSGT00940000159005.c.a.a.e.a.a.a.a.a.b	ENSGT00940000155091.fb.b	ENSGT00530000064158.c.b #35	ENSGT00940000160969 #36	ENSGT00530000064158.c.a #35	ENSGT01030000234518.C.a.a	ENSGT00510000047802.h.a #34	ENSGT00390000005100.f.b #33	ENSGT00940000159005.c.a.a.e.a.a.a.a.b.b.a.b	ENSGT00940000154348.c.b.a.a.a	ENSGT01050000244887.A.a.a.b.c #31	ENSGT00940000159005.c.a.a.e.a.a.a.a.b.b.b	ENSGT00940000159005.c.a.b.c.a	ENSGT00390000013443.c.i.b #22	ENSGT00940000159869.e #23	ENSGT00940000160550.d #24	ENSGT00940000159788.a.a.d ##21
Salmo	ANCESTRAL SPECIES	28	ENSGT00950000183150.a.a.a.d	ENSGT00940000157744.c.d	ENSGT00390000005065.j #37	ENSGT00940000165414.d	ENSGT00940000159148.a.a	ENSGT00950000183047.c.a.a.c	ENSGT00940000160969 #36	ENSGT00530000064158.c.a #35	ENSGT01030000234518.C.a.a	ENSGT00510000047802.h.a #34	ENSGT00390000005100.f.b #33	ENSGT00940000154348.c.b.a.a.a.d.a.b	ENSGT01050000244887.A.a.a.b.c #31	ENSGT00940000159005.c.a.a.e.a.a.a.a.b.b.b	ENSGT00940000159005.c.a.b.c.a	ENSGT00390000013443.c.i.b #22	ENSGT00940000159869.e #23	ENSGT00940000160550.d #24	ENSGT00940000159788.a.a.c ##21	ENSGT00510000047770.c.a.f	ENSGT00940000160389.b	ENSGT00940000159313.m.b	ENSGT00940000161012.q.b	ENSGT00940000163288.a.b.b.b.a.a.a.b.a.b.b	ENSGT00940000157809.j.a.f	ENSGT00940000163288.a.b.b.b.a.a.a.a.n.b	ENSGT00940000163288.a.b.b.b.a.a.a.a.m.b	ENSGT00940000157809.j.a.e.a.vb.a.a.a.a.b.a	ENSGT00940000163288.a.b.b.b.b.h.a.a	ENSGT00940000157809.j.b.fb.d	ENSGT00940000163288.a.b.b.a.o
Atlantic salmon	MODERN SPECIES	22	notch3 (ENSSSAG00000017188)	rdh8a (ENSSSAG00000093095)	ENSSSAG00000091513	col5a3a (ENSSSAG00000090709)	olfm2a (ENSSSAG00000037307)	trip10a (ENSSSAG00000014835)	p2ry11 (ENSSSAG00000118972)	ppan (ENSSSAG00000041926) #35	p2ry11 (ENSSSAG00000116010)	eif3g (ENSSSAG00000042802) #34	dnmt1 (ENSSSAG00000042884) #33	ENSSSAG00000107004	s1pr2 (ENSSSAG00000117042) #31	ENSSSAG00000094724	ENSSSAG00000063714	CDC37 (ENSSSAG00000037947) #22	TYK2 (ENSSSAG00000039032) #23	raver1 (ENSSSAG00000040809) #24	ENSSSAG00000061402 ##21	prkcsh (ENSSSAG00000066539)	elavl3 (ENSSSAG00000059465)	ENSSSAG00000066525	ENSSSAG00000065513	kank2 (ENSSSAG00000065406)	ENSSSAG00000095438	ENSSSAG00000065388	ENSSSAG00000093862	ENSSSAG00000082970	ENSSSAG00000111938	ENSSSAG00000065233	ENSSSAG00000103747
River trout	MODERN SPECIES	25	ENSSTUG00000022613	MFAP4 (ENSSTUG00000022590)	notch3 (ENSSTUG00000017994)	rdh8a (ENSSTUG00000017789)	olfm2a (ENSSTUG00000017771)	trip10a (ENSSTUG00000017501)	angptl6 (ENSSTUG00000017474) #36	ppan (ENSSTUG00000017288) #35	p2ry11 (ENSSTUG00000017264)	eif3g (ENSSTUG00000017192) #34	dnmt1 (ENSSTUG00000016789) #33	s1pr2 (ENSSTUG00000016749) #31	ENSSTUG00000016739	ENSSTUG00000016710	ENSSTUG00000016701	CDC37 (ENSSTUG00000016671) #22	TYK2 (ENSSTUG00000015939) #23	raver1 (ENSSTUG00000015867) #24	PDE4A (ENSSTUG00000015806) ##21	prkcsh (ENSSTUG00000015642)	elavl3 (ENSSTUG00000015497)	DOCK6 (ENSSTUG00000013593)	hbae3 (ENSSTUG00000013496)	kank2 (ENSSTUG00000013455)	ENSSTUG00000013409	ENSSTUG00000013924	ENSSTUG00000013914	HBE1 (ENSSTUG00000013886)	hbaa1 (ENSSTUG00000013859)	ENSSTUG00000013812	ENSSTUG00000013771
Oncorhynchus	ANCESTRAL SPECIES	48	ENSGT00940000155412.a.a.a.a.c	ENSGT00940000159148.a.a	ENSGT00950000183047.c.a.a.c.a	ENSGT00950000183047.c.a.a.c.b	ENSGT00940000159005.c.a.a.e.a.a.a.a.a.a	ENSGT00940000155091.fb.a	ENSGT00530000064158.d #35	ENSGT00510000047802.h.b.a.b #34	ENSGT00530000064158.c.a #35	ENSGT01030000234518.C.a.a	ENSGT00510000047802.h.a #34	ENSGT00390000005100.f.b #33	ENSGT01050000244887.A.a.a.b.c #31	ENSGT00940000159005.c.a.a.e.a.a.a.a.b.b.a.b	ENSGT00940000159005.c.a.b.d	ENSGT00390000013443.c.i.b #22	ENSGT00940000159869.e #23	ENSGT00940000160550.d #24	ENSGT00940000159788.a.a.d ##21	ENSGT00510000047770.c.a.g	ENSGT00940000160389.b	ENSGT00940000159313.m.b	ENSGT00940000161012.q.a	ENSGT00940000157809.j.a.e.a.vb.a.b	ENSGT00940000163288.a.b.b.b.a.a.a.a.m.b	ENSGT00940000157809.j.a.e.a.vb.b.a	ENSGT00940000163288.a.b.b.b.a.a.a.a.n.b	ENSGT00940000161012.q.b	ENSGT00940000163288.a.b.b.b.a.a.a.b.a.a.a	ENSGT00940000157809.j.a.e.a.vb.b.b	ENSGT00940000163288.a.b.b.b.a.a.a.b.a.b.b
Oncorhynchus_a	ANCESTRAL SPECIES	307															ENSGT00940000159005.c.a.b.c.a	ENSGT00390000013443.c.i.b #22	ENSGT00940000159869.e #23	ENSGT00940000160550.d #24	ENSGT00940000159788.a.a.d ##21	ENSGT00510000047770.c.a.g
Coho salmon	MODERN SPECIES	26	notch3 (ENSOKIG00005001745)	rdh8a (ENSOKIG00005036547)	col5a3a (ENSOKIG00005036232)	olfm2a (ENSOKIG00005036211)	trip10a (ENSOKIG00005035938)	ENSOKIG00005035887	ENSOKIG00005035873	ENSOKIG00005035865	ppan (ENSOKIG00005035749) #35	p2ry11 (ENSOKIG00005035741)	eif3g (ENSOKIG00005035630) #34	dnmt1 (ENSOKIG00005032606) #33	ENSOKIG00005032448	ENSOKIG00005032437	ENSOKIG00005032424	CDC37 (ENSOKIG00005032376) #22	TYK2 (ENSOKIG00005028483) #23	raver1 (ENSOKIG00005028171) #24	PDE4A (ENSOKIG00005028072) ##21	prkcsh (ENSOKIG00005027951)	elavl3 (ENSOKIG00005027809)	DOCK6 (ENSOKIG00005024565)	kank2 (ENSOKIG00005024310)	HBE1 (ENSOKIG00005024281)	hbae3 (ENSOKIG00005024268)	HBE1 (ENSOKIG00005024259)	ENSOKIG00005024245	HBE1 (ENSOKIG00005024235)	ENSOKIG00005024221	ENSOKIG00005024210	ENSOKIG00005024134
Chinook salmon	MODERN SPECIES	33	ENSOTSG00005038060	HBE1 (ENSOTSG00005038059)	ENSOTSG00005038052	ENSOTSG00005038046	ENSOTSG00005038044	ENSOTSG00005038043	ENSOTSG00005038042	ENSOTSG00005038041	elavl3 (ENSOTSG00005038040)	prkcsh (ENSOTSG00005037997)	elavl3 (ENSOTSG00005037993)	PDE4A (ENSOTSG00005037991) ##21	raver1 (ENSOTSG00005037990) #24	TYK2 (ENSOTSG00005034719) #23	ENSOTSG00005034707	CDC37 (ENSOTSG00005034705) #22	ENSOTSG00005034704	s1pr2 (ENSOTSG00005034703) #31	dnmt1 (ENSOTSG00005034062) #33	p2ry11 (ENSOTSG00005034055)	eif3g (ENSOTSG00005034054) #34	ppan (ENSOTSG00005034053) #35	p2ry11 (ENSOTSG00005034052)	ENSOTSG00005034051	ENSOTSG00005034049	trip10a (ENSOTSG00005033238)	gpatch8 (ENSOTSG00005033230)	ENSOTSG00005033229	wnt9b (ENSOTSG00005033228)	arf2a (ENSOTSG00005033226)	ENSOTSG00005033225
Rainbow trout	MODERN SPECIES	3	ENSOMYG00000041175	notch3 (ENSOMYG00000041258)	rdh8a (ENSOMYG00000041589)	ENSOMYG00000042364	col5a3a (ENSOMYG00000058090)	olfm2a (ENSOMYG00000041606)	trip10a (ENSOMYG00000041677)	ENSOMYG00000042304	ENSOMYG00000042309	ppan (ENSOMYG00000042317) #35	eif3g (ENSOMYG00000042349) #34	dnmt1 (ENSOMYG00000042427) #33	s1pr2 (ENSOMYG00000042518) #31	ENSOMYG00000042522	ENSOMYG00000042527	CDC37 (ENSOMYG00000042535) #22	TYK2 (ENSOMYG00000042593) #23	raver1 (ENSOMYG00000042880) #24	ENSOMYG00000048293	ENSOMYG00000042889 ##21	prkcsh (ENSOMYG00000042911)	elavl3 (ENSOMYG00000042965)	ENSOMYG00000043330	ENSOMYG00000055398	kank2 (ENSOMYG00000044358)	ENSOMYG00000024119	hbae3 (ENSOMYG00000044363)	ENSOMYG00000044375	ENSOMYG00000044390	ENSOMYG00000044393	ENSOMYG00000044399
Huchen	MODERN SPECIES	1506				olfm2a (ENSHHUG00000042922)	trip10a (ENSHHUG00000042924)	ENSHHUG00000042944	ENSHHUG00000042948	ppan (ENSHHUG00000042951) #35	p2ry11 (ENSHHUG00000042977)	eif3g (ENSHHUG00000042978) #34	dnmt1 (ENSHHUG00000043023) #33	s1pr2 (ENSHHUG00000043276) #31	ENSHHUG00000043277	ENSHHUG00000043278	ENSHHUG00000043282	CDC37 (ENSHHUG00000043284) #22	TYK2 (ENSHHUG00000043370) #23	raver1 (ENSHHUG00000043999) #24
Northern pike	MODERN SPECIES	10	ENSELUG00000024203	ppan (ENSELUG00000024160) #35	p2ry11 (ENSELUG00000024129)	hbb (ENSELUG00000023879)	ENSELUG00000023809	ENSELUG00000022253	ENSELUG00000025012	p2ry11 (ENSELUG00000023710)	eif3g (ENSELUG00000023699) #34	dnmt1 (ENSELUG00000023659) #33	s1pr2 (ENSELUG00000023634) #31	ENSELUG00000026246	ENSELUG00000023577	ENSELUG00000023622	ENSELUG00000023511	CDC37 (ENSELUG00000023490) #22	TYK2 (ENSELUG00000023410) #23	raver1 (ENSELUG00000023287) #24	PDE4A (ENSELUG00000000987) ##21	prkcsh (ENSELUG00000023141)	elavl3 (ENSELUG00000023043)	DOCK6 (ENSELUG00000022967)	kank2 (ENSELUG00000022513)	hbae3 (ENSELUG00000022315)	ENSELUG00000022381	ENSELUG00000022456	ENSELUG00000022339	ENSELUG00000022303	ENSELUG00000030862	ENSELUG00000027199	ENSELUG00000028051
Osteoglossiformes	ANCESTRAL SPECIES	109									ENSGT01050000244887.A.a.a.b #31	ENSGT00390000005100 #33	ENSGT00510000047802 #34	ENSGT00530000064158 #35	ENSGT00940000155091.fb	ENSGT00940000159005.c.a.a	ENSGT00940000159005.c.a.b	ENSGT00390000013443.c.i #22	ENSGT00940000159869 #23	ENSGT00940000160550 #24	ENSGT00940000175510	ENSGT00940000159788.a.a ##21	ENSGT00510000047770.c.a	ENSGT00940000160389	ENSGT00940000159313.o	ENSGT00940000161012	ENSGT00940000156922.a.c	ENSGT00940000159156.q	ENSGT00940000156940.a	ENSGT00940000159298	ENSGT00500000044930	ENSGT00940000158812	ENSGT00940000157651
Asian bonytongue	MODERN SPECIES	23	notch3 (ENSSFOG00015023784)	rdh8a (ENSSFOG00015023777)	col5a3a (ENSSFOG00015023766)	olfm2b (ENSSFOG00015007944)	VAV1 (ENSSFOG00015032872)	trip10a (ENSSFOG00015023746)	ENSSFOG00015023741	ENSSFOG00015023729	ppan (ENSSFOG00015023726) #35	EIF3G (ENSSFOG00015023723) #34	dnmt1 (ENSSFOG00015023715) #33	s1pr2 (ENSSFOG00015023711) #31	ENSSFOG00015023708	ENSSFOG00015023700	ENSSFOG00015023692	CDC37 (ENSSFOG00015023686) #22	TYK2 (ENSSFOG00015023672) #23	raver1 (ENSSFOG00015023666) #24	ENSSFOG00015023664 #24	ENSSFOG00015031475	ENSSFOG00015023646 ##21	prkcsh (ENSSFOG00015023635)	elavl3 (ENSSFOG00015023630)	DOCK6 (ENSSFOG00015023613)	kank2 (ENSSFOG00015023605)	RAI1 (ENSSFOG00015023602)	ENSSFOG00015023596	TOM1L2 (ENSSFOG00015023575)	drc3 (ENSSFOG00015023554)	GID4 (ENSSFOG00015027229)	noxo1a (ENSSFOG00015023545)
Osteoglossocephalai	ANCESTRAL SPECIES	1205																ENSGT00390000013443.c.j #22	ENSGT00940000170960
Clupeocephala	ANCESTRAL SPECIES	336					ENSGT00950000182957.b.a.b.a.a	ENSGT00390000016020	ENSGT00390000005386	ENSGT00940000153167.A.b	ENSGT00940000161162	ENSGT00530000063205.A	ENSGT00390000002365	ENSGT00940000156947.i	ENSGT00390000008664	ENSGT00940000160832	ENSGT00940000159005.c.b	ENSGT00390000013443.c.j #22	ENSGT00940000159788.a.b ##21	ENSGT00940000159613	ENSGT00390000009759
Otomorpha	ANCESTRAL SPECIES	390					ENSGT00950000182957.b.a.b.a.a	ENSGT00390000016020	ENSGT00390000005386	ENSGT00940000153167.A.b	ENSGT00940000161162	ENSGT00530000063205.A	ENSGT00390000002365	ENSGT00940000156947.i	ENSGT00390000008664	ENSGT00940000160832.d	ENSGT00940000159005.c.b	ENSGT00390000013443.c.j #22	ENSGT00940000159788.a.b ##21	ENSGT00940000159613	ENSGT00390000009759
Otophysi	ANCESTRAL SPECIES	28	ENSGT00940000162790.a.u.a	ENSGT00530000063777.a.a.a	ENSGT00940000160542	ENSGT00940000159148.b	ENSGT00940000154535.C	ENSGT00950000182957.b.a.b.a.a	ENSGT00390000016020	ENSGT00390000005386.r	ENSGT00940000153167.A.b	ENSGT00940000161162	ENSGT00530000063205.A	ENSGT00390000002365	ENSGT00940000156947.i	ENSGT00390000008664	ENSGT00940000160832.d	ENSGT00390000013443.c.j #22	ENSGT00940000159788.a.b ##21	ENSGT00940000159613	ENSGT00390000009759
Characiphysae	ANCESTRAL SPECIES	277																ENSGT00390000013443.c.j #22	ENSGT00940000159788.a.b ##21	ENSGT00940000159613	ENSGT00390000009759
Channel catfish	MODERN SPECIES	18										ENSIPUG00000013595	ENSIPUG00000013582	bfar (ENSIPUG00000013569)	ENSIPUG00000013557	txndc11 (ENSIPUG00000013523)	ENSIPUG00000013508	cdc37 (ENSIPUG00000013465) #22	ENSIPUG00000013452	gga2 (ENSIPUG00000013423)	ears2 (ENSIPUG00000013399)	SP6 (ENSIPUG00000013392)	ENSIPUG00000012996	ENSIPUG00000012915	ENSIPUG00000012898	LYPD1 (ENSIPUG00000012881)	ENSIPUG00000012841	ENSIPUG00000012817	TMC7 (ENSIPUG00000012788)	wfikkn1 (ENSIPUG00000012777)	ENSIPUG00000012764	ENSIPUG00000012734	ENSIPUG00000012715
Characiphysae_b	ANCESTRAL SPECIES	307																ENSGT00390000013443.c.j #22	ENSGT00940000159788.a.b ##21	ENSGT00940000159613	ENSGT00390000009759
Electric eel	MODERN SPECIES	424						LYPD1 (ENSEEEG00000016555)	ENSEEEG00000016556	ENSEEEG00000016559	ENSEEEG00000016562	ENSEEEG00000016565	ENSEEEG00000016566	txndc11 (ENSEEEG00000016568)	BFAR (ENSEEEG00000016569)	ENSEEEG00000016570	sp6 (ENSEEEG00000016571)	cdc37 (ENSEEEG00000016572) #22	ENSEEEG00000016574 ##21	ENSEEEG00000016577	ears2 (ENSEEEG00000016576)
Characoidei	ANCESTRAL SPECIES	438																ENSGT00390000013443.c.j #22	ENSGT00940000159788.a.b ##21	ENSGT00940000159613	ENSGT00390000009759
Mexicana tetra	MODERN SPECIES	989																cdc37 (ENSAMXG00000029792) #22	ENSAMXG00000032214 ##21
Cyprinoidei	ANCESTRAL SPECIES	30	ENSGT01050000244941.B.c.a	ENSGT00530000063777.a.a.a	ENSGT00940000160542	ENSGT00940000159148.b	ENSGT00950000183249	ENSGT00940000154535.B	ENSGT00940000155412.a.a.b	ENSGT00390000016020	ENSGT00390000005386.r	ENSGT00940000153167.A.b	ENSGT00530000063205.A	ENSGT00390000002365	ENSGT00940000156947.i	ENSGT00390000008664	ENSGT00950000182958.b.a.a.a.b.e.a	ENSGT00390000013443.c.j #22	ENSGT00390000009759
Cyprininae	ANCESTRAL SPECIES	251	ENSGT00940000155412.a.a.b.b	ENSGT00390000005386.r.a	ENSGT00940000153167.A.b	ENSGT00530000063205.A	ENSGT00390000002365.a	ENSGT00940000156947.i	ENSGT00950000182958.b.a.a.a.b.e.a.f	ENSGT00950000182957.b.a.b.a.a.b	ENSGT00940000161498.d	ENSGT00940000154838.A.f.b.a.f	ENSGT00940000167090	ENSGT01050000244894.a.a.b	ENSGT00940000160859.d.a	ENSGT00640000091701	ENSGT00390000002215.i.a.h	ENSGT00390000013443.c.j #22	ENSGT00390000009759
Cyprininae_a	DUPLICATION
Cyprininae_a	ANCESTRAL SPECIES	321	ENSGT01100000263529.a.a.a.a.a.a.a.b.b.b.a.b.b.b.a.a.a.a.a.a.a.b.a.b.b.a.a.a.b.b.b.b.a	ENSGT00390000016020	ENSGT00940000153167.A.b	ENSGT00530000063205.A	ENSGT00390000002365.a	ENSGT00940000156947.i	ENSGT00950000182958.b.a.a.a.b.e.a.f	ENSGT00950000182957.b.a.b.a.a.b	ENSGT00940000161498.d	ENSGT00940000154838.A.f.b.a.f	ENSGT00940000167090	ENSGT01050000244894.a.a.b	ENSGT00640000091701	ENSGT00940000160859.d.a	ENSGT00390000002215.i.a.h	ENSGT00390000013443.c.j.a #22	ENSGT00390000009759
Golden-line barbel	DUPLICATION
Golden-line barbel	MODERN SPECIES	2007															LYPD1 (ENSSGRG00000019098)	cdc37 (ENSSGRG00000019097) #22	ears2 (ENSSGRG00000019082)
Golden-line barbel	MODERN SPECIES	1998														ENSSGRG00000018903	LYPD1 (ENSSGRG00000018901)	cdc37 (ENSSGRG00000018899) #22
Common carp reference	MODERN SPECIES	27	ENSCCRG00000060598	ENSCCRG00000044677	ENSCCRG00000058017	cyp3a65 (ENSCCRG00000070397)	ENSCCRG00000068565	ENSCCRG00000060371	ENSCCRG00000037500	sp6 (ENSCCRG00000025655)	ENSCCRG00000031811	ENSCCRG00000059920	ENSCCRG00000079920	ENSCCRG00000052843	ENSCCRG00000071845	ENSCCRG00000056058	ENSCCRG00000029563	ENSCCRG00000058812 #22	ENSCCRG00000057204	ENSCCRG00000081147	ENSCCRG00000021812	ENSCCRG00000075908	ENSCCRG00000049873	ENSCCRG00000070910	ENSCCRG00000058823	ENSCCRG00000080844	ENSCCRG00000068301	ENSCCRG00000061400	ENSCCRG00000018144	ENSCCRG00000055998	ENSCCRG00000063323	tspan34 (ENSCCRG00000081827)	ENSCCRG00000032565
Cyprininae_a	ANCESTRAL SPECIES																	ENSGT00390000013443.c.j.b #22
Common carp reference	MODERN SPECIES	22	ENSCCRG00000072939	ENSCCRG00000056294	ENSCCRG00000071663	ENSCCRG00000044662	ENSCCRG00000044666	ENSCCRG00000056795	ENSCCRG00000081662	cyp3a65 (ENSCCRG00000044727)	ENSCCRG00000046235	ENSCCRG00000080527	ENSCCRG00000070801	sp6 (ENSCCRG00000038535)	ENSCCRG00000025509	ENSCCRG00000013168	ENSCCRG00000073794	ENSCCRG00000034864 #22	ENSCCRG00000081323	ENSCCRG00000062958	ENSCCRG00000062544	ENSCCRG00000079866	ENSCCRG00000000044	ENSCCRG00000067200	ENSCCRG00000000041	ENSCCRG00000000042	ENSCCRG00000060402	ENSCCRG00000009903	ENSCCRG00000058282	ENSCCRG00000036319	ENSCCRG00000039598	ENSCCRG00000058943	ENSCCRG00000000444
Goldfish	DUPLICATION
Goldfish	DUPLICATION
Goldfish	MODERN SPECIES	439															LYPD1 (ENSCARG00000051250)	cdc37 (ENSCARG00000051161) #22	ears2 (ENSCARG00000051150)
Goldfish	MODERN SPECIES	1277															LYPD1 (ENSCARG00000041713)	cdc37 (ENSCARG00000041738) #22	ENSCARG00000041804	ENSCARG00000041926
Goldfish	MODERN SPECIES		ENSCARG00000002798	txndc11 (ENSCARG00000002757)	eri2 (ENSCARG00000002741)	thumpd1 (ENSCARG00000002728)	ENSCARG00000002721	cyp3a65 (ENSCARG00000002115)	ENSCARG00000001901	sp6 (ENSCARG00000001895)	ENSCARG00000001891	ENSCARG00000001888	ENSCARG00000001877	wfikkn1 (ENSCARG00000001875)	TMC7 (ENSCARG00000001869)	ENSCARG00000001857	LYPD1 (ENSCARG00000001850)	cdc37 (ENSCARG00000001838) #22	ENSCARG00000001818	slc27a1b (ENSCARG00000001609)	ENSCARG00000001543	ENSCARG00000001542	ENSCARG00000001513	ENSCARG00000001501	ENSCARG00000001498	ADGRL1 (ENSCARG00000001442)	ENSCARG00000001425	ENSCARG00000001420	ENSCARG00000001406	ENSCARG00000001377	ENSCARG00000001366	ENSCARG00000001346	ENSCARG00000001322
Zebrafish	MODERN SPECIES		ENSDARG00000105295	ENSDARG00000112310	ENSDARG00000111704	tmed1b (ENSDARG00000017255) #7	ENSDARG00000103054 ##8	ENSDARG00000113332 ##8	MFAP4 (ENSDARG00000111491)	MFAP4 (ENSDARG00000116066)	mfap4.4 (ENSDARG00000038682)	TRIP10 (ENSDARG00000100788)	ENSDARG00000086539	ENSDARG00000112526	eri2 (ENSDARG00000104392)	thumpd1 (ENSDARG00000100264)	ENSDARG00000099619	cdc37 (ENSDARG00000099301) #22	ears2 (ENSDARG00000103099)	pin1 (ENSDARG00000101915)	ENSDARG00000110574	MFAP4 (ENSDARG00000090557)	MFAP4 (ENSDARG00000089667)	mfap4.2 (ENSDARG00000088745)	MFAP4 (ENSDARG00000038683)	mfap4.1 (ENSDARG00000090783)	MFAP4 (ENSDARG00000038681)	ENSDARG00000095746	ENSDARG00000094845	ENSDARG00000115195	ENSDARG00000109399	ENSDARG00000093877	ENSDARG00000092806
Clupeiformes	ANCESTRAL SPECIES	610															ENSGT00940000159005.c.b	ENSGT00390000013443.c.j #22	ENSGT00940000159788.a.b ##21	ENSGT00940000159613	ENSGT00390000009759
Atlantic herring	MODERN SPECIES	16	mdh1aa (ENSCHAG00000013826)	otx2a (ENSCHAG00000013814)	ENSCHAG00000013786	commd1 (ENSCHAG00000013763)	txndc11 (ENSCHAG00000013477)	pla2g10 (ENSCHAG00000013463)	ENSCHAG00000013458	parn (ENSCHAG00000011635)	ENSCHAG00000011595	ENSCHAG00000011592	ENSCHAG00000011591	ENSCHAG00000011574	ENSCHAG00000011505	ENSCHAG00000011487	ENSCHAG00000011433	cdc37 (ENSCHAG00000011345) #22	ENSCHAG00000010650 ##21	ENSCHAG00000010590	ears2 (ENSCHAG00000010566)	ENSCHAG00000009728	pus10 (ENSCHAG00000009421)	cct4 (ENSCHAG00000008988)	ENSCHAG00000008942	FAM161A (ENSCHAG00000008816)	XPO1 (ENSCHAG00000008476)	USP34 (ENSCHAG00000003621)	ENSCHAG00000003436	ENSCHAG00000003407	ENSCHAG00000003380	ENSCHAG00000003352	ENSCHAG00000003325
Denticle herring	MODERN SPECIES	13	sult6b1 (ENSDCDG00000028254)	ENSDCDG00000028252	ENSDCDG00000028250	SPTBN1 (ENSDCDG00000027087)	EML6 (ENSDCDG00000026989)	rtn4a (ENSDCDG00000026979)	ENSDCDG00000026975	ENSDCDG00000026972	rps27a (ENSDCDG00000026958)	mtif2 (ENSDCDG00000026721)	vwa5a (ENSDCDG00000026699)	ENSDCDG00000026694	ENSDCDG00000026693	ENSDCDG00000026690	ENSDCDG00000026688	cdc37 (ENSDCDG00000026687) #22	PDE4A (ENSDCDG00000023977) ##21	ENSDCDG00000022745	ears2 (ENSDCDG00000022705)	otx2a (ENSDCDG00000022691)	mdh1aa (ENSDCDG00000022686)	ugp2a (ENSDCDG00000022675)	spast (ENSDCDG00000021452)	dpy30 (ENSDCDG00000021410)	psen2 (ENSDCDG00000021405)	srd5a2a (ENSDCDG00000021383)	MFAP4 (ENSDCDG00000021372)	ENSDCDG00000021369	ENSDCDG00000021368	JAG1 (ENSDCDG00000019752)	btbd3a (ENSDCDG00000019694)
Euteleosteomorpha	ANCESTRAL SPECIES	478															ENSGT00940000159005.c.b	ENSGT00390000013443.c.j #22	ENSGT00940000170960
Protacanthopterygii	ANCESTRAL SPECIES	117	ENSGT00940000159293	ENSGT00940000157972.d	ENSGT00950000183183.b.b	ENSGT00950000183183.b.a	ENSGT00940000177139	ENSGT00940000173775	ENSGT00940000165949	ENSGT00390000002886.a.a.a	ENSGT00940000156222.a.b	ENSGT00950000182894.A.a	ENSGT00390000004428.b	ENSGT00940000167193	ENSGT00940000155217.o.b.c.b	ENSGT01050000244893.c.a.a.b	ENSGT00940000159005.c.b	ENSGT00390000013443.c.j #22	ENSGT00940000159788.a.b ##21	ENSGT00940000159613	ENSGT00390000009759.d	ENSGT00950000182957.b.a.b.a.a	ENSGT00390000016020	ENSGT00390000005386	ENSGT00940000161162.b	ENSGT00530000063205.A	ENSGT00390000002365	ENSGT00940000156947.i	ENSGT00390000008664
Salmoninae	ANCESTRAL SPECIES	636															ENSGT00940000159005.c.b.e.a	ENSGT00390000013443.c.j #22	ENSGT00940000159788.a.b ##21	ENSGT00940000159613.j	ENSGT00390000009759.d.a	ENSGT00940000159613.i.a	ENSGT00390000009759.d.b	ENSGT00950000182957.b.a.b.a.a	ENSGT00390000016020	ENSGT00940000157803.eb	ENSGT00390000005386.n.a	ENSGT00950000183052.b.c.a.a.a	ENSGT00940000161162.a	ENSGT00530000063205.A.x
Salmoninae_a	DUPLICATION
Salmoninae_a	ANCESTRAL SPECIES	146												ENSGT01090000260030.b	ENSGT00940000153582.a.m.a.b.c.a	ENSGT01100000263533.b.b.a.b.a.b.a.a	ENSGT00940000159005.c.b.e.a	ENSGT00390000013443.c.j.e #22	ENSGT00940000159788.a.b ##21	ENSGT00940000159613.j	ENSGT00390000009759.d.a	ENSGT00940000159613.i.a	ENSGT00390000009759.d.b	ENSGT00950000182957.b.a.b.a.a.d	ENSGT00390000016020	ENSGT00940000157803.eb	ENSGT00390000005386.n.a	ENSGT00940000154308.C.g.a.b.a	ENSGT01100000263533.b.b.a.a.a.a.b.a.b	ENSGT01100000263533.b.a.a.a.a	ENSGT00940000156207.b.c.a.a.a	ENSGT00940000156207.a.a.a.e.a	ENSGT01100000263533.b.b.b.a.a.a.a.c.a.a.d
Salmo	ANCESTRAL SPECIES	256											ENSGT01090000260030.b.h	ENSGT00940000153582.a.m.a.b.c.a	ENSGT01100000263520.a.b.a.b.c.b.b.b	ENSGT01100000263533.b.b.a.b.a.b.a.a	ENSGT00940000159005.c.b.e.a.b	ENSGT00390000013443.c.j.e #22	ENSGT00940000159788.a.b.g ##21	ENSGT00940000159613.j.b	ENSGT00390000009759.d.a
River trout	DUPLICATION
River trout	MODERN SPECIES	31	ENSSTUG00000022392	ENSSTUG00000022402	ENSSTUG00000022414	ENSSTUG00000020762	ENSSTUG00000020791	ENSSTUG00000020810	ENSSTUG00000020844	ENSSTUG00000020861	ENSSTUG00000020937	ENSSTUG00000020927	ENSSTUG00000020940	ENSSTUG00000020967	ENSSTUG00000020994	ENSSTUG00000021039	ENSSTUG00000021090	cdc37 (ENSSTUG00000021096) #22	ENSSTUG00000021118 ##21	ENSSTUG00000021135	ears2 (ENSSTUG00000021196)	ENSSTUG00000021591	ENSSTUG00000021595	ENSSTUG00000021649	txndc11 (ENSSTUG00000021666)	ENSSTUG00000021682	ENSSTUG00000021694	ENSSTUG00000021741	ENSSTUG00000021768	ENSSTUG00000021780	ENSSTUG00000021801	ENSSTUG00000021848	ENSSTUG00000021876
River trout	MODERN SPECIES	31	ENSSTUG00000023663	ENSSTUG00000023645	ENSSTUG00000023633	ENSSTUG00000023610	ENSSTUG00000023578	ENSSTUG00000023552	ENSSTUG00000023544	ENSSTUG00000023527	ENSSTUG00000023514	ENSSTUG00000023512	ENSSTUG00000023509	ENSSTUG00000023502	ENSSTUG00000023481	ENSSTUG00000023469	ENSSTUG00000023409	cdc37 (ENSSTUG00000023189) #22	ENSSTUG00000023130 ##21	ENSSTUG00000023064	EARS2 (ENSSTUG00000022696)	ENSSTUG00000022575	ENSSTUG00000022569	txndc11 (ENSSTUG00000022551)	ENSSTUG00000022538	ENSSTUG00000022529	ENSSTUG00000022526	ENSSTUG00000022495	ENSSTUG00000022475	ENSSTUG00000022467	ENSSTUG00000022456	ENSSTUG00000022447	ENSSTUG00000022442
Atlantic salmon	MODERN SPECIES	3	ENSSSAG00000091777	ENSSSAG00000104885	ENSSSAG00000121387	ENSSSAG00000101705	ENSSSAG00000004234	ENSSSAG00000004247	ENSSSAG00000103004	ENSSSAG00000020057	ENSSSAG00000000551	ENSSSAG00000020106	ENSSSAG00000087887	ENSSSAG00000115407	ENSSSAG00000120120	ENSSSAG00000115404	ENSSSAG00000086862	ENSSSAG00000004786 #22	ENSSSAG00000099503 ##21	GGA1 (ENSSSAG00000004703)	ENSSSAG00000004648	ENSSSAG00000004613	ENSSSAG00000096688	ENSSSAG00000095628	ENSSSAG00000004888	ENSSSAG00000089085	ENSSSAG00000117255	ENSSSAG00000004494	ENSSSAG00000118909	ENSSSAG00000108991	ENSSSAG00000111649	ENSSSAG00000093442	ENSSSAG00000103647
Oncorhynchus	ANCESTRAL SPECIES	129														ENSGT01100000263533.b.b.a.b.a.b.a.a	ENSGT00940000159005.c.b.e.a.c.a	ENSGT00390000013443.c.j.e #22	ENSGT00940000159788.a.b ##21	ENSGT00940000159613.i.a	ENSGT00390000009759.d.b	ENSGT00390000016020.i.a.a	ENSGT00390000016020.j	ENSGT00940000157803.eb	ENSGT00390000005386.n.a	ENSGT00940000154308.C.g.a.b.a	ENSGT01100000263533.b.b.a.a.a.a.b.a.b	ENSGT01100000263533.b.a.a.a.a	ENSGT00940000161979.B.n.a.b	ENSGT00940000161162.a.d	ENSGT00530000063205.A.w.b
Rainbow trout	MODERN SPECIES	8	ENSOMYG00000033580	ENSOMYG00000033556	ENSOMYG00000063038	ENSOMYG00000072972	ENSOMYG00000060680	ENSOMYG00000033658	ENSOMYG00000061379	ENSOMYG00000075020	ENSOMYG00000057252	ENSOMYG00000062047	ENSOMYG00000077568	ENSOMYG00000064997	ENSOMYG00000054621	ENSOMYG00000049779	ENSOMYG00000033737	ENSOMYG00000033791 #22	ENSOMYG00000050794 ##21	ENSOMYG00000033677	ENSOMYG00000064470	ENSOMYG00000061542	ENSOMYG00000077696	ENSOMYG00000054767	ENSOMYG00000033876	ENSOMYG00000033858	ENSOMYG00000033846	ENSOMYG00000025819	ENSOMYG00000059880	ENSOMYG00000062541	ENSOMYG00000015531	ENSOMYG00000070610	ENSOMYG00000015515
Salmoninae_a	ANCESTRAL SPECIES																	ENSGT00390000013443.c.j.f #22
Oncorhynchus	ANCESTRAL SPECIES	130	ENSGT00940000154308.D.c.a.b.a.b.a.b.a.a.a.a.b.a.d.b	ENSGT01100000263520.a.b.a.b.c.a.b.a.b.a.b	ENSGT01100000263495.A.a.b.b.a.a.b.b.b.b.b.b.b.a.a.b.b	ENSGT00940000154308.D.c.a.b.a.a.a.a.a.b.a.a.b.a	ENSGT00940000154308.D.c.a.b.a.a.a.b.b.a.a	ENSGT00940000154308.D.c.a.b.a.b.a.b.a.b.a.a.a	ENSGT01100000263495.A.a.b.b.a.a.b.b.b.b.b.b.b.a.a.a.a.a.a.b	ENSGT00940000156207.a.a.b.a.a.a.a.a.b	ENSGT01100000263552.f.a.a.a.a	ENSGT00940000159005.c.b.f	ENSGT01100000263492.b.b.b.a.a.a.b.d.a.b.a.b.a.b	ENSGT01100000263520.a.b.a.b.c.b.a.a	ENSGT00940000153582.b.b.a.b.a.a.b	ENSGT01100000263495.A.a.b.b.a.b.b.b.b	ENSGT00940000159005.c.b.e.a.c.b	ENSGT00390000013443.c.j.f #22
Rainbow trout	MODERN SPECIES	4	ENSOMYG00000011239	ENSOMYG00000033666	ENSOMYG00000064112	ENSOMYG00000050108	ENSOMYG00000011365	ENSOMYG00000015003	ENSOMYG00000049832	ENSOMYG00000060890	ENSOMYG00000014980	ENSOMYG00000051929	ENSOMYG00000071003	ENSOMYG00000054623	ENSOMYG00000049117	ENSOMYG00000057153	ENSOMYG00000038211	ENSOMYG00000065553 #22	ENSOMYG00000033694	ENSOMYG00000076043	ENSOMYG00000066033	ENSOMYG00000048129	ENSOMYG00000058078	ENSOMYG00000070143	ENSOMYG00000054379	ENSOMYG00000015347	ENSOMYG00000015320	ENSOMYG00000076941	ENSOMYG00000055523	ENSOMYG00000015249	ENSOMYG00000065939	ENSOMYG00000015242	ENSOMYG00000072050
Oncorhynchus_a	ANCESTRAL SPECIES																	ENSGT00390000013443.c.j.f #22
Coho salmon	MODERN SPECIES	809																ENSOKIG00005048547 #22
Salmo	ANCESTRAL SPECIES	223					ENSGT01100000263495.A.a.b.b.a.a.b.b.b.b.b.b.b.a.a.b.b.b	ENSGT00940000154308.D.c.a.b.a.a.a.a.a.b.a.a.b.a	ENSGT00940000154308.D.c.a.b.a.a.a.b.b.a.a.b	ENSGT00940000154308.D.c.a.b.a.b.a.b.a.b.a.a.a	ENSGT01100000263495.A.a.b.b.a.a.b.b.b.b.b.b.b.a.a.a.a.a.a.b.a	ENSGT00940000153582.b.b.a.b.a.a.b	ENSGT01100000263495.A.a.b.b.a.b.b.b.b	ENSGT01100000263520.a.b.a.b.c.b.b.a	ENSGT00940000159788.a.b.h ##21	ENSGT00940000159613.j.a	ENSGT00940000159005.c.b.e.a.a	ENSGT00390000013443.c.j.f #22
Atlantic salmon	MODERN SPECIES	11	ENSSSAG00000000498	ENSSSAG00000000529	ENSSSAG00000121020	ENSSSAG00000000543	ENSSSAG00000000475	ENSSSAG00000095701	ENSSSAG00000107206	ENSSSAG00000095784	ENSSSAG00000082065	ENSSSAG00000115369	ENSSSAG00000093447	ENSSSAG00000112188	ENSSSAG00000096091	ENSSSAG00000109622	ENSSSAG00000091160	ENSSSAG00000000998 #22	ENSSSAG00000104488 ##21	ENSSSAG00000004301	ENSSSAG00000113927	ENSSSAG00000004803	ENSSSAG00000113485	ENSSSAG00000111305	ENSSSAG00000003397	ENSSSAG00000004516	ENSSSAG00000000192	ENSSSAG00000094309	ENSSSAG00000118373	ENSSSAG00000003516	ENSSSAG00000110557	ENSSSAG00000098159	ENSSSAG00000095317
Northern pike	MODERN SPECIES	8	ENSELUG00000021371	ENSELUG00000025721	ENSELUG00000021355	ENSELUG00000021287	ENSELUG00000027537	ENSELUG00000021259	ENSELUG00000021254	ENSELUG00000032797	ENSELUG00000025416	ENSELUG00000021229	ENSELUG00000030797	ENSELUG00000028456	ENSELUG00000026848	ENSELUG00000021190	ENSELUG00000025118	cdc37 (ENSELUG00000000932) #22	ENSELUG00000021084 ##21	ENSELUG00000020830	ears2 (ENSELUG00000020736)	ENSELUG00000014185	ENSELUG00000028594	txndc11 (ENSELUG00000014167)	BFAR (ENSELUG00000032153)	ENSELUG00000013911	ENSELUG00000026291	ENSELUG00000029404	ENSELUG00000027179	ENSELUG00000027655	ENSELUG00000013865	ENSELUG00000029744	ENSELUG00000034209
Acanthomorphata	ANCESTRAL SPECIES	450															ENSGT00940000159005.c.b	ENSGT00390000013443.c.j #22	ENSGT00940000170960
Euacanthomorphacea	ANCESTRAL SPECIES	3	ENSGT00940000157752	ENSGT00940000163566.a.a	ENSGT00950000183157.a.a.b.d	ENSGT00940000163679	ENSGT00950000183060.a.a.d.a	ENSGT01070000253744.a.a.a.b.a.a	ENSGT00390000001316	ENSGT00940000161391.b	ENSGT00940000153167.A.b	ENSGT00940000161162	ENSGT00530000063205.A	ENSGT00390000002365	ENSGT00940000156947.i	ENSGT00390000008664	ENSGT00940000159005.c.b.a	ENSGT00390000013443.c.j #22	ENSGT00940000159788.a.b ##21	ENSGT00940000159613	ENSGT00390000009759	ENSGT00950000182957.b.a.b.a.a	ENSGT00940000155366.a	ENSGT00390000016020	ENSGT00390000005386	ENSGT00940000166978.a	ENSGT00940000166978.b	ENSGT00940000164305	ENSGT00940000160222.b	ENSGT00940000161420.g.a	ENSGT00940000158857	ENSGT00940000159005.c.b.b	ENSGT00940000160446
Percomorphaceae	ANCESTRAL SPECIES	17	ENSGT00940000157752	ENSGT00940000163566.a.a	ENSGT00950000183157.a.a.b.d	ENSGT00940000163679	ENSGT00950000183060.a.a.d.a	ENSGT01070000253744.a.a.a.b.a.a	ENSGT00390000001316	ENSGT00940000161391.b	ENSGT00940000153167.A.b	ENSGT00940000161162	ENSGT00530000063205.A	ENSGT00390000002365	ENSGT00940000156947.i	ENSGT00390000008664	ENSGT00940000159005.c.b.a	ENSGT00390000013443.c.j #22	ENSGT00940000159788.a.b ##21	ENSGT00940000159613	ENSGT00390000009759	ENSGT00950000182957.b.a.b.a.a	ENSGT00940000155366.a	ENSGT00390000016020	ENSGT00390000005386	ENSGT00940000166978.b	ENSGT00940000164305	ENSGT00940000160222.b	ENSGT00940000161420.g.a	ENSGT00940000158857	ENSGT00940000159005.c.b.b	ENSGT00940000160446	ENSGT00940000163377.a.b.a
Percomorphaceae_B	ANCESTRAL SPECIES		ENSGT00940000157752	ENSGT00940000163566.a.a	ENSGT00950000183157.a.a.b.d	ENSGT00940000163679	ENSGT00950000183060.a.a.d.a	ENSGT01070000253744.a.a.a.b.a.a	ENSGT00390000001316	ENSGT00940000161391.b	ENSGT00940000153167.A.b	ENSGT00940000161162	ENSGT00530000063205.A	ENSGT00390000002365	ENSGT00940000156947.i	ENSGT00390000008664	ENSGT00940000159005.c.b.a	ENSGT00390000013443.c.j #22	ENSGT00940000159788.a.b ##21	ENSGT00940000159613	ENSGT00390000009759	ENSGT00950000182957.b.a.b.a.a	ENSGT00940000155366.a	ENSGT00390000016020	ENSGT00390000005386	ENSGT00940000166978.a	ENSGT01100000263533.b.b.a.a.a.a.a.a	ENSGT00940000166978.b	ENSGT00940000164305	ENSGT00940000160222.b	ENSGT00940000161420.g.a	ENSGT00940000158857	ENSGT00940000159005.c.b.b
Ovalentaria	ANCESTRAL SPECIES		ENSGT00940000163566.a.a	ENSGT00950000183157.a.a.b.d	ENSGT00940000163679	ENSGT00950000183060.a.a.d.a	ENSGT01070000253744.a.a.a.b.a.a	ENSGT00390000001316	ENSGT00940000161391.b	ENSGT00940000153167.A.b	ENSGT00940000161162	ENSGT00530000063205.A	ENSGT00390000002365	ENSGT00940000156947.i	ENSGT00390000008664	ENSGT00940000168620	ENSGT00940000159005.c.b.a	ENSGT00390000013443.c.j #22	ENSGT00940000159788.a.b ##21	ENSGT00940000159613	ENSGT00390000009759	ENSGT00950000182957.b.a.b.a.a	ENSGT00940000155366.a	ENSGT00390000016020	ENSGT00390000005386	ENSGT00940000166978.a	ENSGT01100000263533.b.b.a.a.a.a.a.a	ENSGT00940000166978.b	ENSGT00940000164305	ENSGT00940000160222.b	ENSGT00940000161420.g.a	ENSGT00940000158857	ENSGT00940000159005.c.b.b
Atherinomorphae	ANCESTRAL SPECIES	20	ENSGT00940000157752	ENSGT00950000183157.a.a.b.d	ENSGT00940000163679	ENSGT00950000183060.a.a.d.a	ENSGT01070000253744.a.a.a.b.a.a	ENSGT00390000001316	ENSGT00940000161391.b	ENSGT00940000153167.A.b	ENSGT00940000161162	ENSGT00530000063205.A	ENSGT00390000002365	ENSGT00940000156947.i	ENSGT00390000008664	ENSGT00940000168620	ENSGT00940000159005.c.b.a	ENSGT00390000013443.c.j #22	ENSGT00940000159788.a.b ##21	ENSGT00940000159613	ENSGT00390000009759	ENSGT00950000182957.b.a.b.a.a	ENSGT00940000155366.a	ENSGT00390000016020	ENSGT00390000005386	ENSGT00940000166978.a	ENSGT00940000166978.b	ENSGT00940000164305	ENSGT00940000160222.b	ENSGT00940000161420.g.a	ENSGT00940000158857	ENSGT00940000159005.c.b.b	ENSGT00940000173625
Cyprinodontiformes	ANCESTRAL SPECIES	18	ENSGT00940000157752	ENSGT00950000183157.a.a.b.d	ENSGT00940000163679	ENSGT00950000183060.a.a.d.a	ENSGT01070000253744.a.a.a.b.a.a	ENSGT00390000001316	ENSGT00940000161391.b	ENSGT00940000153167.A.b	ENSGT00940000161162	ENSGT00530000063205.A	ENSGT00390000002365	ENSGT00940000156947.i	ENSGT00390000008664	ENSGT00940000168620	ENSGT00940000159005.c.b.a	ENSGT00390000013443.c.j #22	ENSGT00940000159788.a.b ##21	ENSGT00940000159613	ENSGT00390000009759	ENSGT00950000182957.b.a.b.a.a	ENSGT00940000155366.a	ENSGT00390000016020	ENSGT00390000005386	ENSGT00940000166978.a	ENSGT00940000166978.b	ENSGT00940000164305	ENSGT00940000160222.b	ENSGT00940000161420.g.a	ENSGT00940000158857	ENSGT00940000159005.c.b.b	ENSGT00940000173625
Cyprinodontoidei	ANCESTRAL SPECIES	24	ENSGT00940000166978.a	ENSGT00390000005386	ENSGT00390000016020	ENSGT00940000155366.a	ENSGT00950000182957.b.a.b.a.a	ENSGT00390000009759	ENSGT00940000159613	ENSGT00940000153167.A.b	ENSGT00940000161162	ENSGT00530000063205.A	ENSGT00390000002365	ENSGT00940000156947.i	ENSGT00390000008664	ENSGT00940000168620	ENSGT00940000159005.c.b.a	ENSGT00390000013443.c.j #22	ENSGT00940000159788.a.b ##21	ENSGT00940000161391.b	ENSGT00390000001316	ENSGT01070000253744.a.a.a.b.a.a	ENSGT00950000183060.a.a.d.a	ENSGT00940000163679	ENSGT00950000183157.a.a.b.d	ENSGT00940000157752	ENSGT00390000014423	ENSGT00940000155412.a.a.b	ENSGT00940000154535.B	ENSGT00950000183249	ENSGT00940000159148.b	ENSGT00950000183047.c.a.b	ENSGT00940000154130.a.a.a
NAME_4	ANCESTRAL SPECIES	273															ENSGT00940000159005.c.b.a	ENSGT00390000013443.c.j #22	ENSGT00940000159788.a.b ##21	ENSGT00940000161391.b	ENSGT00390000001316	ENSGT01070000253744.a.a.a.b.a.a	ENSGT00950000183060.a.a.d.a	ENSGT00940000163679	ENSGT00950000183157.a.a.b.d	ENSGT00940000157752	ENSGT00390000014423	ENSGT00940000155412.a.a.b	ENSGT00950000183249	ENSGT00940000159148.b
Mummichog	MODERN SPECIES	2462													ENSFHEG00000005573	ENSFHEG00000005561	ENSFHEG00000005543	CDC37 (ENSFHEG00000005517) #22	ENSFHEG00000005314 ##21	ELFN1 (ENSFHEG00000004967)	mad1l1 (ENSFHEG00000004906)	ENSFHEG00000004775	ENSFHEG00000004759	ttyh3b (ENSFHEG00000004750)	ENSFHEG00000004679	PLK1 (ENSFHEG00000004658)	ENSFHEG00000004624	rdh8b (ENSFHEG00000004615)	ENSFHEG00000004592	olfm2b (ENSFHEG00000000120)
Sheepshead minnow	MODERN SPECIES	1785													ENSCVAG00000009863	ENSCVAG00000009874	ENSCVAG00000009887	cdc37 (ENSCVAG00000009892) #22	ENSCVAG00000009929 ##21
Poeciliinae	ANCESTRAL SPECIES	27	ENSGT00940000166978.a	ENSGT00390000016020	ENSGT00390000005386	ENSGT00940000155366.a	ENSGT00950000182957.b.a.b.a.a	ENSGT00390000009759	ENSGT00940000159613	ENSGT00940000153167.A.b	ENSGT00940000161162	ENSGT00530000063205.A	ENSGT00390000002365	ENSGT00940000156947.i	ENSGT00390000008664	ENSGT00940000168620	ENSGT00940000159005.c.b.a	ENSGT00390000013443.c.j #22	ENSGT00940000159788.a.b ##21	ENSGT00940000161391.b	ENSGT00390000001316	ENSGT00940000154895.b	ENSGT01050000244827.C.c.b	ENSGT00940000154778.d	ENSGT00390000018433	ENSGT00940000155694.g	ENSGT00950000182936.a.a.b.a	ENSGT00390000016644	ENSGT00390000017709	ENSGT00940000154986.b	ENSGT00390000004179	ENSGT00940000159346	ENSGT00940000176937
Poecilia	ANCESTRAL SPECIES	31	ENSGT00390000016020	ENSGT00390000005386	ENSGT00940000155366.a	ENSGT00950000182957.b.a.b.a.a	ENSGT00390000009759	ENSGT00940000159613	ENSGT00940000153167.A.b	ENSGT00940000161162	ENSGT00530000063205.A	ENSGT00390000002365	ENSGT00940000156947.i	ENSGT00390000008664	ENSGT00940000159005.c.b.a.bb.b	ENSGT00940000168620	ENSGT00940000159005.c.b.a.cb	ENSGT00390000013443.c.j #22	ENSGT00940000159788.a.b ##21	ENSGT00940000161391.b	ENSGT00390000001316	ENSGT00940000154895.b	ENSGT01050000244827.C.c.b	ENSGT00940000154778.d	ENSGT00390000018433	ENSGT00940000155694.g	ENSGT00950000182936.a.a.b.a	ENSGT00390000016644	ENSGT00390000017709	ENSGT00940000154986.b	ENSGT00390000004179	ENSGT00940000159346	ENSGT00940000176937
NAME_6	ANCESTRAL SPECIES	35	ENSGT00390000016020	ENSGT00390000005386	ENSGT00950000182957.b.a.b.a.a	ENSGT00390000009759	ENSGT00940000159613	ENSGT00940000153167.A.b	ENSGT00940000161162	ENSGT00530000063205.A	ENSGT00390000002365	ENSGT00940000156947.i	ENSGT00390000008664	ENSGT00940000159005.c.b.a.bb.a	ENSGT00940000170960	ENSGT00940000168620	ENSGT00940000159005.c.b.a.cb	ENSGT00390000013443.c.j #22	ENSGT00940000159788.a.b ##21	ENSGT00940000161391.b	ENSGT00390000001316	ENSGT00940000154895.b	ENSGT01050000244827.C.c.b	ENSGT00940000154778.d	ENSGT00390000018433	ENSGT00940000155694.g	ENSGT00950000182936.a.a.b.a	ENSGT00390000016644	ENSGT00390000017709	ENSGT00940000154986.b	ENSGT00390000004179	ENSGT00940000159346	ENSGT00940000176937
Amazon molly	MODERN SPECIES	284	ENSPFOG00000013455	txndc11 (ENSPFOG00000013306)	BFAR (ENSPFOG00000013268)	ENSPFOG00000013184	ENSPFOG00000024492	ears2 (ENSPFOG00000013117)	ENSPFOG00000013033	parn (ENSPFOG00000012823)	REXO5 (ENSPFOG00000012767)	ENSPFOG00000012691	thumpd1 (ENSPFOG00000012649)	AXIN1 (ENSPFOG00000012489)	ENSPFOG00000012369	ENSPFOG00000023128	ENSPFOG00000012347	cdc37 (ENSPFOG00000012254) #22	ENSPFOG00000012025 ##21	ELFN1 (ENSPFOG00000011989)	mad1l1 (ENSPFOG00000011779)	ENSPFOG00000011611	mab21l2 (ENSPFOG00000019886)	LRBA (ENSPFOG00000010485)	rps3a (ENSPFOG00000024394)	sh3d19 (ENSPFOG00000010206)	sh3d19 (ENSPFOG00000010116)	FHIP1A (ENSPFOG00000010107)	gatb (ENSPFOG00000009933)	dctpp1 (ENSPFOG00000019885)	FBXW7 (ENSPFOG00000009723)	ENSPFOG00000024464	tma16 (ENSPFOG00000009657)
Sailfin molly	MODERN SPECIES	302																CDC37 (ENSPLAG00000022909) #22	ENSPLAG00000022949 ##21	ELFN1 (ENSPLAG00000023005)	mad1l1 (ENSPLAG00000023018)	ENSPLAG00000023038	ENSPLAG00000023088
Guppy	MODERN SPECIES	439	ENSPREG00000000155	ENSPREG00000000154	ENSPREG00000000153	txndc11 (ENSPREG00000000152)	BFAR (ENSPREG00000000151)	ENSPREG00000000150	ENSPREG00000000149	ENSPREG00000000148	parn (ENSPREG00000000147)	REXO5 (ENSPREG00000000146)	ENSPREG00000000145	thumpd1 (ENSPREG00000000144)	AXIN1 (ENSPREG00000000143)	GTF3C1 (ENSPREG00000000142)	ENSPREG00000000141	cdc37 (ENSPREG00000000140) #22	ENSPREG00000000139 ##21	ENSPREG00000000138	ELFN1 (ENSPREG00000000137)	mad1l1 (ENSPREG00000000136)	ENSPREG00000000135	ENSPREG00000000134	mab21l2 (ENSPREG00000000133)	LRBA (ENSPREG00000000132)	rps3a (ENSPREG00000000131)	ENSPREG00000000130	FHIP1A (ENSPREG00000000129)	gatb (ENSPREG00000000128)	dctpp1 (ENSPREG00000000127)	ENSPREG00000000126	FBXW7 (ENSPREG00000000125)
Platyfish	MODERN SPECIES	19	AXIN1 (ENSXMAG00000014736)	GTF3C1 (ENSXMAG00000014693)	ENSXMAG00000027731	ENSXMAG00000027721	ENSXMAG00000028929	ENSXMAG00000020959	ENSXMAG00000024130	ENSXMAG00000030058	ENSXMAG00000025246	ENSXMAG00000022804	ENSXMAG00000021212	ENSXMAG00000029505	ENSXMAG00000027980	ENSXMAG00000028825	ENSXMAG00000026537	cdc37 (ENSXMAG00000027416) #22	ENSXMAG00000007185 ##21	ELFN1 (ENSXMAG00000014093)	mad1l1 (ENSXMAG00000014070)	ENSXMAG00000014051	LRBA (ENSXMAG00000014034)	mab21l2 (ENSXMAG00000027198)	rps3a (ENSXMAG00000008099)	sh3d19 (ENSXMAG00000025073)	FHIP1A (ENSXMAG00000008086)	gatb (ENSXMAG00000008071)	dctpp1 (ENSXMAG00000019725)	ENSXMAG00000021421	FBXW7 (ENSXMAG00000023997)	tma16 (ENSXMAG00000008051)	ENSXMAG00000008047
Oryzias	ANCESTRAL SPECIES	15	ENSGT00940000157752	ENSGT00950000183157.a.a.b.d	ENSGT00940000163679	ENSGT00950000183060.a.a.d.a	ENSGT00940000158717.`b.b	ENSGT01070000253744.a.a.a.b.a.a	ENSGT00390000001316	ENSGT00940000161391.b	ENSGT00940000153167.A.b	ENSGT00940000161162	ENSGT00530000063205.A	ENSGT00390000002365	ENSGT00940000156947.i	ENSGT00390000008664	ENSGT00940000159005.c.b.a	ENSGT00390000013443.c.j #22	ENSGT00940000159788.a.b ##21	ENSGT00940000159613	ENSGT00390000009759	ENSGT00950000182957.b.a.b.a.a.e.a	ENSGT00950000182957.b.a.b.a.a.f.b	ENSGT00950000182957.b.a.b.a.a.e.b	ENSGT00940000155366.a	ENSGT00390000016020	ENSGT00390000005386	ENSGT00940000166978.a	ENSGT00940000166978.b	ENSGT00940000164305	ENSGT00940000160222.b	ENSGT00940000161420.g.a	ENSGT00940000158857
Oryzias_b	ANCESTRAL SPECIES	21	ENSGT00940000157752	ENSGT00950000183157.a.a.b.d	ENSGT00940000163679	ENSGT00950000183060.a.a.d.a	ENSGT00940000158717.`b.a	ENSGT01070000253744.a.a.a.b.a.a	ENSGT00390000001316	ENSGT00940000161391.b	ENSGT00940000153167.A.b	ENSGT00940000161162	ENSGT00530000063205.A	ENSGT00390000002365	ENSGT00940000156947.i	ENSGT00390000008664	ENSGT00940000159005.c.b.a	ENSGT00390000013443.c.j #22	ENSGT00940000159788.a.b ##21	ENSGT00940000159613	ENSGT00390000009759	ENSGT00950000182957.b.a.b.a.a.f.a	ENSGT00950000182957.b.a.b.a.a.e.a	ENSGT00950000182957.b.a.b.a.a.f.b.b	ENSGT00950000182957.b.a.b.a.a.e.b	ENSGT00950000182957.b.a.b.a.a.f.b.a.b	ENSGT00950000182957.b.a.b.a.a.f.b.a.a	ENSGT00940000155366.a	ENSGT00390000016020	ENSGT00390000005386	ENSGT00940000166978.b	ENSGT00940000164305	ENSGT00940000160222.b
Javanese ricefish	MODERN SPECIES		lgals2b (ENSOJAG00000002771)	ENSOJAG00000002766	ADAP1 (ENSOJAG00000002707)	ENSOJAG00000002695	ENSOJAG00000001626	ENSOJAG00000001414	mad1l1 (ENSOJAG00000001397)	ENSOJAG00000001387	ELFN1 (ENSOJAG00000001383)	parn (ENSOJAG00000001370)	ENSOJAG00000001343	thumpd1 (ENSOJAG00000001335)	AXIN1 (ENSOJAG00000001332)	ENSOJAG00000001329	ENSOJAG00000001323	cdc37 (ENSOJAG00000001308) #22	ENSOJAG00000000635 ##21	ENSOJAG00000000143	ears2 (ENSOJAG00000000088)	ENSOJAG00000000059	ENSOJAG00000000056	ENSOJAG00000010897	ENSOJAG00000010851	ENSOJAG00000010835	txndc11 (ENSOJAG00000010717)	BFAR (ENSOJAG00000010698)	ENSOJAG00000010655	ENSOJAG00000009935	micall2b (ENSOJAG00000009874)	uncx4.1 (ENSOJAG00000009856)	ENSOJAG00000009848
Indian medaka	MODERN SPECIES	35	ENSOMEG00000019896	ttyh3b (ENSOMEG00000019848)	ENSOMEG00000019785	ENSOMEG00000019757	mad1l1 (ENSOMEG00000019711)	ENSOMEG00000019632	ELFN1 (ENSOMEG00000019602)	ENSOMEG00000019579	parn (ENSOMEG00000019555)	REXO5 (ENSOMEG00000019491)	ENSOMEG00000019453	thumpd1 (ENSOMEG00000019361)	AXIN1 (ENSOMEG00000019314)	GTF3C1 (ENSOMEG00000019151)	ENSOMEG00000018895	cdc37 (ENSOMEG00000000835) #22	ENSOMEG00000018844 ##21	ENSOMEG00000018790	ears2 (ENSOMEG00000018724)	ENSOMEG00000018689	ENSOMEG00000018666	ENSOMEG00000018617	ENSOMEG00000018592	ENSOMEG00000018560	ENSOMEG00000018520	ENSOMEG00000018486	ENSOMEG00000018457	ENSOMEG00000018439	txndc11 (ENSOMEG00000018423)	BFAR (ENSOMEG00000018347)	ENSOMEG00000018262
Oryzias_a	ANCESTRAL SPECIES	26	ENSGT00940000157752	ENSGT00950000183157.a.a.b.d	ENSGT00940000163679	ENSGT00950000183060.a.a.d.a	ENSGT00940000158717.`b.b	ENSGT01070000253744.a.a.a.b.a.a	ENSGT00390000001316	ENSGT00940000161391.b	ENSGT00940000153167.A.b	ENSGT00940000161162	ENSGT00530000063205.A	ENSGT00390000002365	ENSGT00940000156947.i	ENSGT00390000008664.gb	ENSGT00940000159005.c.b.a	ENSGT00390000013443.c.j #22	ENSGT00940000159788.a.b ##21	ENSGT00940000159613	ENSGT00390000009759	ENSGT00950000182957.b.a.b.a.a.e.a	ENSGT00950000182957.b.a.b.a.a.f.b	ENSGT00950000182957.b.a.b.a.a.e.b	ENSGT00940000155366.a	ENSGT00390000016020	ENSGT00390000005386	ENSGT00940000166978.a	ENSGT00940000166978.b	ENSGT00940000164305	ENSGT00940000160222.b	ENSGT00940000161420.g.a	ENSGT00940000158857
Japanese Medaka HdrR	MODERN SPECIES		ttyh3b (ENSORLG00000009692)	ENSORLG00000009705	ENSORLG00000026280	mad1l1 (ENSORLG00000024940)	ENSORLG00000027423	ENSORLG00000027018	ENSORLG00000024893	REXO5 (ENSORLG00000009738)	ENSORLG00000009777	thumpd1 (ENSORLG00000027557)	ENSORLG00000009838	ENSORLG00000029378	ENSORLG00000009935	ENSORLG00000009944	ENSORLG00000027155	cdc37 (ENSORLG00000009960) #22	ENSORLG00000009983 ##21	ENSORLG00000010028	ears2 (ENSORLG00000010051)	ENSORLG00000025855	ENSORLG00000026220	ENSORLG00000023412	ENSORLG00000026387	ENSORLG00000022807	ENSORLG00000027506	ENSORLG00000023843	ENSORLG00000023835	ENSORLG00000024467	ENSORLG00000026577	txndc11 (ENSORLG00000010094)	BFAR (ENSORLG00000010108)
Chinese medaka	MODERN SPECIES	612				mad1l1 (ENSOSIG00000021178)	ELFN1 (ENSOSIG00000021176)	ENSOSIG00000021175	ENSOSIG00000021174	parn (ENSOSIG00000021170)	REXO5 (ENSOSIG00000021163)	ENSOSIG00000021162	thumpd1 (ENSOSIG00000021161)	AXIN1 (ENSOSIG00000021153)	ENSOSIG00000021150	ENSOSIG00000021148	ENSOSIG00000021145	cdc37 (ENSOSIG00000021133) #22	ENSOSIG00000018173 ##21	ENSOSIG00000017849	ears2 (ENSOSIG00000017782)	ENSOSIG00000017774
Ovalentaria_B	ANCESTRAL SPECIES	4	ENSGT00950000183157.a.a.b.d	ENSGT00940000163679	ENSGT00950000183060.a.a.d.a	ENSGT00940000158717	ENSGT01070000253744.a.a.a.b.a.a	ENSGT00390000001316	ENSGT00940000161391.b	ENSGT00940000153167.A.b	ENSGT00940000161162	ENSGT00530000063205.A	ENSGT00390000002365	ENSGT00940000156947.i	ENSGT00390000008664	ENSGT00940000168620	ENSGT00940000159005.c.b.a	ENSGT00390000013443.c.j #22	ENSGT00940000159788.a.b ##21	ENSGT00940000159613	ENSGT00390000009759	ENSGT00950000182957.b.a.b.a.a	ENSGT00940000155366.a	ENSGT00390000016020	ENSGT00390000005386	ENSGT00940000166978.a	ENSGT01100000263533.b.b.a.a.a.a.a.a	ENSGT00940000166978.b	ENSGT00940000164305	ENSGT00940000160222.b	ENSGT00940000161420.g.a	ENSGT00940000158857	ENSGT00940000159005.c.b.b
Cichlidae	ANCESTRAL SPECIES	3	ENSGT00940000163566.a.a	ENSGT00950000183157.a.a.b.d	ENSGT00940000163679	ENSGT00950000183060.a.a.d.a	ENSGT01070000253744.a.a.a.b.a.a	ENSGT00390000001316	ENSGT00940000161391.b	ENSGT00940000153167.A.b	ENSGT00940000161162	ENSGT00530000063205.A	ENSGT00390000002365	ENSGT00940000156947.i	ENSGT00390000008664	ENSGT00940000159005.c.b.a	ENSGT00940000168620	ENSGT00390000013443.c.j #22	ENSGT00940000159788.b.b #21	ENSGT00940000159788.a.b ##21	ENSGT00940000159613	ENSGT00390000009759	ENSGT00950000182957.b.a.b.a.a	ENSGT00940000155366.a	ENSGT00390000016020	ENSGT00390000005386	ENSGT00940000166978.a	ENSGT01100000263533.b.b.a.a.a.a.a.a	ENSGT00940000166978.b	ENSGT00940000164305	ENSGT00940000160222.b	ENSGT00940000161420.g.a	ENSGT00940000158857
Pseudocrenilabrinae	ANCESTRAL SPECIES	3	ENSGT00950000183157.a.a.b.d	ENSGT00940000163679	ENSGT00950000183060.a.a.d.a	ENSGT01070000253744.a.a.a.b.a.a	ENSGT00390000001316	ENSGT00940000161391.b	ENSGT00940000153167.A.b	ENSGT00940000161162	ENSGT00530000063205.A	ENSGT00390000002365	ENSGT00940000156947.i	ENSGT00390000008664	ENSGT00940000159005.c.b.a.fb.a.a.b	ENSGT00940000159005.c.b.a.fb.a.b	ENSGT00940000168620	ENSGT00390000013443.c.j #22	ENSGT00940000159788.b.b #21	ENSGT00940000159788.a.b ##21	ENSGT00940000159613	ENSGT00390000009759	ENSGT00950000182957.b.a.b.a.a	ENSGT00940000155366.a	ENSGT00390000016020	ENSGT00390000005386	ENSGT00940000166978.a	ENSGT01100000263533.b.b.a.a.a.a.a.a	ENSGT00940000166978.b	ENSGT00940000164305	ENSGT00940000160222.b	ENSGT00940000161420.g.a	ENSGT00940000158857
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	5	ENSGT00940000163679	ENSGT00950000183060.a.a.d.a	ENSGT01070000253744.a.a.a.b.a.a	ENSGT00390000001316	ENSGT00940000161391.b	ENSGT00940000153167.A.b	ENSGT00940000161162	ENSGT00530000063205.A	ENSGT00390000002365	ENSGT00940000156947.i	ENSGT00390000008664	ENSGT00940000159005.c.b.a.fb.a.a.b	ENSGT00940000159005.c.b.a.fb.b	ENSGT00940000159005.c.b.a.fb.a.b	ENSGT00940000168620	ENSGT00390000013443.c.j #22	ENSGT00940000159788.b.b #21	ENSGT00940000159788.a.b ##21	ENSGT00940000159613	ENSGT00390000009759	ENSGT00950000182957.b.a.b.a.a	ENSGT00940000155366.a	ENSGT00390000016020	ENSGT00390000005386	ENSGT00940000166978.a	ENSGT01100000263533.b.b.a.a.a.a.a.a	ENSGT00940000166978.b	ENSGT00940000164305	ENSGT00940000160222.b	ENSGT00940000161420.g.a	ENSGT00940000158857
Haplochromini	ANCESTRAL SPECIES	3	ENSGT00950000183157.a.a.b.d	ENSGT00940000163679	ENSGT00950000183060.a.a.d.a	ENSGT01070000253744.a.a.a.b.a.a	ENSGT00390000001316	ENSGT00940000161391.b	ENSGT00940000153167.A.b	ENSGT00940000161162	ENSGT00530000063205.A	ENSGT00390000002365	ENSGT00940000156947.i	ENSGT00390000008664	ENSGT00940000159005.c.b.a.fb.a.a.b	ENSGT00940000159005.c.b.a.fb.b	ENSGT00940000159005.c.b.a.fb.a.b.b	ENSGT00390000013443.c.j #22	ENSGT00940000159788.a.b ##21	ENSGT00940000159613	ENSGT00390000009759	ENSGT00950000182957.b.a.b.a.a	ENSGT00940000155366.a	ENSGT00390000016020	ENSGT00390000005386	ENSGT00940000166978.a	ENSGT00940000154308.A.b.b.a	ENSGT01100000263533.b.b.a.a.a.a.a.a	ENSGT00940000166978.b	ENSGT00940000164305	ENSGT00940000160222.b	ENSGT00940000161420.g.a	ENSGT00940000158857
Burton s mouthbrooder	MODERN SPECIES	517														ENSHBUG00000006193	ENSHBUG00000006204	cdc37 (ENSHBUG00000006354) #22	ENSHBUG00000006427 ##21	ENSHBUG00000006472	ears2 (ENSHBUG00000006503)	ENSHBUG00000006518	txndc11 (ENSHBUG00000006556)	BFAR (ENSHBUG00000006611)	ENSHBUG00000006625	ENSHBUG00000006639	ENSHBUG00000006656	ENSHBUG00000006662	ENSHBUG00000006674	micall2b (ENSHBUG00000006697)	uncx4.1 (ENSHBUG00000006707)	ubn1 (ENSHBUG00000006730)	ENSHBUG00000000165
Haplochromini_A	ANCESTRAL SPECIES	2	ENSGT00950000183157.a.a.b.d	ENSGT00940000163679	ENSGT00950000183060.a.a.d.a	ENSGT01070000253744.a.a.a.b.a.a	ENSGT00390000001316	ENSGT00940000161391.b	ENSGT00940000153167.A.b	ENSGT00940000161162	ENSGT00530000063205.A	ENSGT00390000002365	ENSGT00940000156947.i	ENSGT00390000008664	ENSGT00940000159005.c.b.a.fb.a.a.b	ENSGT00940000159005.c.b.a.fb.b	ENSGT00940000159005.c.b.a.fb.a.b.b	ENSGT00390000013443.c.j #22	ENSGT00940000159788.a.b ##21	ENSGT00940000159613	ENSGT00390000009759	ENSGT00950000182957.b.a.b.a.a.k	ENSGT00940000155366.a	ENSGT00390000016020	ENSGT00390000005386	ENSGT00940000166978.a	ENSGT00940000154308.A.b.b.a	ENSGT01100000263533.b.b.a.a.a.a.a.a	ENSGT00940000166978.b	ENSGT00940000164305	ENSGT00940000160222.b	ENSGT00940000161420.g.a	ENSGT00940000158857
Haplochromini_B	ANCESTRAL SPECIES	8	ENSGT00950000183157.a.a.b.d	ENSGT00940000163679	ENSGT00950000183060.a.a.d.a	ENSGT01070000253744.a.a.a.b.a.a	ENSGT00390000001316	ENSGT00940000161391.b	ENSGT00940000153167.A.b	ENSGT00940000161162	ENSGT00530000063205.A	ENSGT00390000002365	ENSGT00940000156947.i	ENSGT00390000008664	ENSGT00940000159005.c.b.a.fb.a.a.b	ENSGT00940000159005.c.b.a.fb.a.b.a	ENSGT00940000159005.c.b.a.fb.a.b.b	ENSGT00390000013443.c.j #22	ENSGT00940000159788.a.b ##21	ENSGT00940000159613	ENSGT00390000009759	ENSGT00950000182957.b.a.b.a.a.k	ENSGT00940000155366.a	ENSGT00390000016020	ENSGT00390000005386	ENSGT00940000166978.a	ENSGT00940000154308.A.b.b.a	ENSGT01100000263533.b.b.a.a.a.a.a.a	ENSGT00940000166978.b	ENSGT00940000164305	ENSGT00940000160222.b	ENSGT00940000161420.g.a	ENSGT00940000158857
Zebra mbuna	MODERN SPECIES	1109	ENSMZEG00005013511	ttyh3b (ENSMZEG00005013535)	ENSMZEG00005013553	ENSMZEG00005013556	mad1l1 (ENSMZEG00005013564)	ELFN1 (ENSMZEG00005013570)	parn (ENSMZEG00005013590)	REXO5 (ENSMZEG00005013657)	ENSMZEG00005013686	thumpd1 (ENSMZEG00005013693)	AXIN1 (ENSMZEG00005013701)	GTF3C1 (ENSMZEG00005013714)	ENSMZEG00005013740	ENSMZEG00005013744	ENSMZEG00005013747	cdc37 (ENSMZEG00005013758) #22	ENSMZEG00005013787 ##21	ENSMZEG00005013818	ears2 (ENSMZEG00005013831)	ENSMZEG00005013838	ENSMZEG00005013848	ENSMZEG00005013861	txndc11 (ENSMZEG00005013866)	BFAR (ENSMZEG00005013874)	ENSMZEG00005013902	ENSMZEG00005013907	ENSMZEG00005013913	ENSMZEG00005013919	micall2b (ENSMZEG00005013931)	uncx4.1 (ENSMZEG00005013940)	ubn1 (ENSMZEG00005013955)
Eastern happy	MODERN SPECIES	18	ENSACLG00000004292	ENSACLG00000004313	ttyh3b (ENSACLG00000004343)	ENSACLG00000004380	ENSACLG00000004391	mad1l1 (ENSACLG00000004464)	ELFN1 (ENSACLG00000004559)	parn (ENSACLG00000004742)	REXO5 (ENSACLG00000004778)	ENSACLG00000004805	thumpd1 (ENSACLG00000004830)	AXIN1 (ENSACLG00000004841)	GTF3C1 (ENSACLG00000004917)	ENSACLG00000004995	ENSACLG00000005001	cdc37 (ENSACLG00000005013) #22	ENSACLG00000005032 ##21	ENSACLG00000005083	ENSACLG00000005403	ears2 (ENSACLG00000005434)	ENSACLG00000005443	ENSACLG00000005551	litaf (ENSACLG00000005564)	txndc11 (ENSACLG00000005618)	BFAR (ENSACLG00000005637)	ENSACLG00000005671	ENSACLG00000005681	ENSACLG00000005694	ENSACLG00000005708	ENSACLG00000005715	micall2b (ENSACLG00000005750)
P. nyererei	MODERN SPECIES	440	rasd3 (ENSPNYG00000006613)	ENSPNYG00000006618	ttyh3b (ENSPNYG00000006636)	ENSPNYG00000006687	mad1l1 (ENSPNYG00000006775)	ELFN1 (ENSPNYG00000006801)	parn (ENSPNYG00000006835)	REXO5 (ENSPNYG00000006922)	ENSPNYG00000007024	thumpd1 (ENSPNYG00000007061)	AXIN1 (ENSPNYG00000007082)	GTF3C1 (ENSPNYG00000007177)	ENSPNYG00000007323	ENSPNYG00000007353	ENSPNYG00000007374	cdc37 (ENSPNYG00000007413) #22	ENSPNYG00000007527 ##21	ENSPNYG00000007568	ears2 (ENSPNYG00000007588)	ENSPNYG00000007636	ENSPNYG00000007708	txndc11 (ENSPNYG00000007755)	BFAR (ENSPNYG00000007766)	ENSPNYG00000007781	ENSPNYG00000007814	ENSPNYG00000007838	micall2b (ENSPNYG00000007858)	uncx4.1 (ENSPNYG00000007885)	ubn1 (ENSPNYG00000007901)	ENSPNYG00000007919	GPR108 (ENSPNYG00000007941)
Lyretail cichlid	MODERN SPECIES	410	ttyh3b (ENSNBRG00000006367)	ENSNBRG00000006422	ENSNBRG00000006510	ENSNBRG00000006542	ELFN1 (ENSNBRG00000006791)	parn (ENSNBRG00000006805)	ENSNBRG00000006877	ENSNBRG00000006918	thumpd1 (ENSNBRG00000006987)	AXIN1 (ENSNBRG00000007032)	ENSNBRG00000007127	ENSNBRG00000007195	ENSNBRG00000007239	ENSNBRG00000007250	ENSNBRG00000007268	cdc37 (ENSNBRG00000007289) #22	ENSNBRG00000007392 #21	ENSNBRG00000007416 ##21	ENSNBRG00000007461	ears2 (ENSNBRG00000007510)	txndc11 (ENSNBRG00000007541)	BFAR (ENSNBRG00000007551)	ENSNBRG00000007595	ENSNBRG00000007602	ENSNBRG00000007613	ENSNBRG00000007626	uncx4.1 (ENSNBRG00000007637)	ubn1 (ENSNBRG00000007656)	ENSNBRG00000007679	GPR108 (ENSNBRG00000007698)	ENSNBRG00000007749
Nile tilapia	MODERN SPECIES	18	ENSONIG00000029600	ENSONIG00000037368	mad1l1 (ENSONIG00000000162)	ELFN1 (ENSONIG00000000160)	parn (ENSONIG00000000151)	ENSONIG00000000148	ENSONIG00000000147	thumpd1 (ENSONIG00000000146)	AXIN1 (ENSONIG00000000144)	GTF3C1 (ENSONIG00000000134)	ENSONIG00000004513	ENSONIG00000040799	ENSONIG00000040955	ENSONIG00000004512	ENSONIG00000042008	cdc37 (ENSONIG00000038685) #22	ENSONIG00000003869 ##21	ENSONIG00000003868	ears2 (ENSONIG00000003867)	ENSONIG00000033799	ENSONIG00000042386	ENSONIG00000038144	ENSONIG00000042632	ENSONIG00000031690	ENSONIG00000030839	txndc11 (ENSONIG00000003864)	BFAR (ENSONIG00000003860)	ENSONIG00000039234	ENSONIG00000038731	ENSONIG00000030853	ENSONIG00000003849
Midas cichlid	MODERN SPECIES	782															ENSACIG00000023579	cdc37 (ENSACIG00000023582) #22	ENSACIG00000023601 #21	ENSACIG00000023605 ##21	ENSACIG00000023606	ears2 (ENSACIG00000023608)	ENSACIG00000023612	litaf (ENSACIG00000023616)	txndc11 (ENSACIG00000023620)	BFAR (ENSACIG00000023621)
Pomacentridae	ANCESTRAL SPECIES	54	ENSGT00940000163566.a.a	ENSGT00950000183157.a.a.b.d	ENSGT00940000163679	ENSGT00950000183060.a.a.d.a	ENSGT01070000253744.a.a.a.b.a.a	ENSGT00390000001316	ENSGT00940000161391.b	ENSGT00940000153167.A.b	ENSGT00940000161162	ENSGT00530000063205.A	ENSGT00390000002365	ENSGT00940000156947.i	ENSGT00390000008664	ENSGT00940000159005.c.b.a	ENSGT00940000168620	ENSGT00390000013443.c.j #22	ENSGT00940000159788.a.b ##21	ENSGT00940000159613	ENSGT00390000009759	ENSGT00950000182957.b.a.b.a.a	ENSGT00940000155366.a	ENSGT00390000016020	ENSGT00390000005386	ENSGT00940000166978.a	ENSGT01100000263533.b.b.a.a.a.a.a.a.e.a	ENSGT00940000166978.b	ENSGT00940000164305	ENSGT00940000160222.b	ENSGT00940000161420.g.a	ENSGT00940000158857	ENSGT00940000159005.c.b.b
Pomacentridae_A	ANCESTRAL SPECIES	49	ENSGT00950000183157.a.a.b.d	ENSGT00940000163679	ENSGT00950000183060.a.a.d.a	ENSGT00940000158717	ENSGT01070000253744.a.a.a.b.a.a	ENSGT00390000001316	ENSGT00940000161391.b	ENSGT00940000153167.A.b	ENSGT00940000161162	ENSGT00530000063205.A	ENSGT00390000002365	ENSGT00940000156947.i	ENSGT00390000008664	ENSGT00940000168620	ENSGT00940000159005.c.b.a	ENSGT00390000013443.c.j #22	ENSGT00940000159788.a.b ##21	ENSGT00940000159613	ENSGT00390000009759	ENSGT00950000182957.b.a.b.a.a	ENSGT00980000203417	ENSGT00390000016020	ENSGT00390000005386	ENSGT00940000166978.a	ENSGT01100000263533.b.b.a.a.a.a.a.a.e.a	ENSGT00940000166978.b	ENSGT00940000164305	ENSGT00940000160222.b	ENSGT00940000161420.g.a	ENSGT00940000158857	ENSGT00940000159005.c.b.b
Amphiprion	ANCESTRAL SPECIES	67	ENSGT00940000163460.b.u.a.c.a	ENSGT00940000163460.b.u.a.c.b	ENSGT00940000177045.b.a	ENSGT01070000253744.a.a.a.b.a.a	ENSGT00390000001316	ENSGT00940000161391.b	ENSGT00940000153167.A.b	ENSGT00940000161162	ENSGT00530000063205.A	ENSGT00390000002365	ENSGT00940000156947.i	ENSGT00390000008664	ENSGT00940000159005.c.b.a.jb.b	ENSGT00940000168620	ENSGT00940000159005.c.b.a.jb.a	ENSGT00390000013443.c.j #22	ENSGT00940000159788.a.b ##21	ENSGT00940000159613	ENSGT00390000009759	ENSGT00950000182957.b.a.b.a.a	ENSGT00390000016020	ENSGT00390000005386	ENSGT00940000166978.a	ENSGT01100000263533.b.b.a.a.a.a.a.a.e.a	ENSGT00940000166978.b	ENSGT00940000164305	ENSGT00940000160222.b	ENSGT00940000161420.g.a	ENSGT00940000158857	ENSGT00940000159005.c.b.b	ENSGT00940000160446
Orange clownfish	MODERN SPECIES	17	ENSAPEG00000010900	ENSAPEG00000010885	ENSAPEG00000010861	mad1l1 (ENSAPEG00000010848)	ELFN1 (ENSAPEG00000010770)	ENSAPEG00000010748	parn (ENSAPEG00000010661)	REXO5 (ENSAPEG00000010627)	ENSAPEG00000010524	thumpd1 (ENSAPEG00000010515)	AXIN1 (ENSAPEG00000010507)	ENSAPEG00000010348	ENSAPEG00000010337	ENSAPEG00000010330	ENSAPEG00000010324	cdc37 (ENSAPEG00000010312) #22	ENSAPEG00000010260 ##21	ENSAPEG00000010200	ears2 (ENSAPEG00000010160)	ENSAPEG00000010127	txndc11 (ENSAPEG00000010109)	BFAR (ENSAPEG00000010071)	ENSAPEG00000010053	ENSAPEG00000010031	ENSAPEG00000010013	ENSAPEG00000009997	ENSAPEG00000009851	ENSAPEG00000009833	micall2b (ENSAPEG00000009792)	uncx4.1 (ENSAPEG00000009771)	ubn1 (ENSAPEG00000009741)
Clown anemonefish	MODERN SPECIES	3252						ELFN1 (ENSAOCG00000003441)	parn (ENSAOCG00000003465)	ENSAOCG00000003481	ENSAOCG00000003497	thumpd1 (ENSAOCG00000003509)	AXIN1 (ENSAOCG00000003547)	ENSAOCG00000004248	ENSAOCG00000004492	ENSAOCG00000004502	ENSAOCG00000004545	cdc37 (ENSAOCG00000000171) #22	ENSAOCG00000004647 ##21
Spiny chromis	MODERN SPECIES	1558										REXO5 (ENSAPOG00000008514)	ERI2 (ENSAPOG00000008458)	thumpd1 (ENSAPOG00000008440)	AXIN1 (ENSAPOG00000008400)	ENSAPOG00000008320	ENSAPOG00000008145	cdc37 (ENSAPOG00000008080) #22	ENSAPOG00000007956 ##21
Bicolor damselfish	MODERN SPECIES	2490														ENSSPAG00000013974	ENSSPAG00000013944	CDC37 (ENSSPAG00000013832) #22	ENSSPAG00000013640 ##21
Percomorphaceae_C	ANCESTRAL SPECIES	3	ENSGT00940000157752	ENSGT00940000163566.a.a	ENSGT00950000183157.a.a.b.d	ENSGT00940000163679	ENSGT00950000183060.a.a.d.a	ENSGT01070000253744.a.a.a.b.a.a	ENSGT00390000001316	ENSGT00940000161391.b	ENSGT00940000153167.A.b	ENSGT00940000161162	ENSGT00530000063205.A	ENSGT00390000002365	ENSGT00940000156947.i	ENSGT00390000008664	ENSGT00940000159005.c.b.a	ENSGT00390000013443.c.j #22	ENSGT00940000159788.a.b ##21	ENSGT00940000159613	ENSGT00390000009759	ENSGT00950000182957.b.a.b.a.a	ENSGT00940000155366.a	ENSGT00390000016020	ENSGT00390000005386	ENSGT00940000166978.a	ENSGT01100000263533.b.b.a.a.a.a.a.a.b	ENSGT00940000166978.b	ENSGT00940000164305	ENSGT00940000160222.b	ENSGT00940000161420.g.a	ENSGT00940000158857	ENSGT00940000159005.c.b.b
Percomorphaceae_D	ANCESTRAL SPECIES		ENSGT00940000157752	ENSGT00940000163566.a.a	ENSGT00950000183157.a.a.b.d	ENSGT00940000163679	ENSGT00950000183060.a.a.d.a	ENSGT01070000253744.a.a.a.b.a.a	ENSGT00390000001316	ENSGT00940000161391.b	ENSGT00940000153167.A.b	ENSGT00940000161162	ENSGT00530000063205.A	ENSGT00390000002365	ENSGT00940000156947.i	ENSGT00390000008664	ENSGT00940000159005.c.b.a	ENSGT00390000013443.c.j #22	ENSGT00940000159788.a.b ##21	ENSGT00940000159613	ENSGT00390000009759	ENSGT00950000182957.b.a.b.a.a	ENSGT00940000155366.a	ENSGT00390000016020	ENSGT00390000005386	ENSGT00940000166978.a	ENSGT01100000263533.b.b.a.a.a.a.a.a.b	ENSGT00940000166978.b	ENSGT00940000164305	ENSGT00940000160222.b	ENSGT00940000161420.g.a	ENSGT00940000158857	ENSGT00940000159005.c.b.b
Anabantaria	ANCESTRAL SPECIES	1	ENSGT00940000157752	ENSGT00940000163566.a.a	ENSGT00950000183157.a.a.b.d	ENSGT00940000163679	ENSGT00950000183060.a.a.d.a	ENSGT01070000253744.a.a.a.b.a.a	ENSGT00390000001316	ENSGT00940000161391.b	ENSGT00940000153167.A.b	ENSGT00940000161162	ENSGT00530000063205.A	ENSGT00390000002365	ENSGT00940000156947.i	ENSGT00390000008664	ENSGT00940000159005.c.b.a	ENSGT00390000013443.c.j #22	ENSGT00940000159788.a.b ##21	ENSGT00940000159613	ENSGT00390000009759	ENSGT00950000182957.b.a.b.a.a	ENSGT00940000155366.a	ENSGT00390000016020	ENSGT00390000005386	ENSGT00940000166978.b	ENSGT00940000164305	ENSGT00940000160222.b	ENSGT00940000161420.g.a	ENSGT00940000158857	ENSGT00940000159005.c.b.b.b	ENSGT00940000173625	ENSGT00940000160446
Zig-zag eel	MODERN SPECIES		ENSMAMG00000007199	ENSMAMG00000007185	ENSMAMG00000007173	ENSMAMG00000007123	ENSMAMG00000007074	ENSMAMG00000007063	ENSMAMG00000007006	ENSMAMG00000006958	ENSMAMG00000006939	ENSMAMG00000027279	ENSMAMG00000006866	thumpd1 (ENSMAMG00000006858)	ENSMAMG00000006828	ENSMAMG00000006751	ENSMAMG00000006678	cdc37 (ENSMAMG00000006603) #22	ENSMAMG00000006588 ##21	ENSMAMG00000006574	ears2 (ENSMAMG00000006541)	ENSMAMG00000006517	ENSMAMG00000006496	ENSMAMG00000006483	ENSMAMG00000006446	ENSMAMG00000024766	ENSMAMG00000006238	ENSMAMG00000006226	uncx4.1 (ENSMAMG00000006206)	ENSMAMG00000026307	ENSMAMG00000006133	ENSMAMG00000006124	ENSMAMG00000006112
Anabantoidei	ANCESTRAL SPECIES		ENSGT00940000164305	ENSGT00940000166978.b	ENSGT00390000005386	ENSGT00390000016020	ENSGT00940000155366.a	ENSGT01070000253744.a.a.a.b.a.a	ENSGT00390000001316	ENSGT00940000161391.b	ENSGT00940000153167.A.b	ENSGT00940000161162	ENSGT00530000063205.A	ENSGT00390000002365	ENSGT00940000156947.i	ENSGT00390000008664	ENSGT00940000159005.c.b.a	ENSGT00390000013443.c.j #22	ENSGT00940000159788.a.b ##21	ENSGT00940000159613	ENSGT00390000009759	ENSGT00950000182957.b.a.b.a.a	ENSGT00950000183060.a.a.d.a	ENSGT00940000163679	ENSGT00950000183157.a.a.b.d	ENSGT00940000163566.a.a	ENSGT00940000157752	ENSGT00390000014423	ENSGT00940000155412.a.a.b	ENSGT00940000154535.B	ENSGT00940000159148.b	ENSGT00940000154615.i.a.b	ENSGT00950000183047.c.a.b
Siamese fighting fish	MODERN SPECIES		ENSBSLG00000001170	BFAR (ENSBSLG00000001172)	txndc11 (ENSBSLG00000001173)	ENSBSLG00000001174	ENSBSLG00000001175	mad1l1 (ENSBSLG00000001222)	ELFN1 (ENSBSLG00000001249)	REXO5 (ENSBSLG00000001278)	parn (ENSBSLG00000001317)	ERI2 (ENSBSLG00000001349)	thumpd1 (ENSBSLG00000001355)	AXIN1 (ENSBSLG00000001373)	ENSBSLG00000001417	ENSBSLG00000001449	ENSBSLG00000001458	cdc37 (ENSBSLG00000001463) #22	ENSBSLG00000001493 ##21	ENSBSLG00000001865	ears2 (ENSBSLG00000001917)	ENSBSLG00000001963	ENSBSLG00000002215	ttyh3b (ENSBSLG00000002346)	ENSBSLG00000002441	FSCN1 (ENSBSLG00000002479)	ENSBSLG00000002489	PLK1 (ENSBSLG00000002512)	ENSBSLG00000002585	rdh8b (ENSBSLG00000002617)	OLFM2 (ENSBSLG00000003588)	MFAP4 (ENSBSLG00000003700)	ENSBSLG00000003747
Climbing perch	MODERN SPECIES		ENSATEG00000004491	ENSATEG00000004506	ENSATEG00000026698	ENSATEG00000004544	ENSATEG00000004563	ENSATEG00000004661	REXO5 (ENSATEG00000004682)	ENSATEG00000004702	thumpd1 (ENSATEG00000028423)	ENSATEG00000004744	ENSATEG00000004787	ENSATEG00000004928	ENSATEG00000004964	ENSATEG00000004973	ENSATEG00000004981	cdc37 (ENSATEG00000004988) #22	ENSATEG00000005009 ##21	ENSATEG00000005207	ears2 (ENSATEG00000005214)	ENSATEG00000005220	ENSATEG00000005260	ENSATEG00000005266	ENSATEG00000005319	ENSATEG00000005335	ENSATEG00000005359	ENSATEG00000026258	ENSATEG00000005392	ENSATEG00000027547	ENSATEG00000028057	ENSATEG00000005657	rdh8b (ENSATEG00000005674)
Carangaria	ANCESTRAL SPECIES		ENSGT00940000157752	ENSGT00940000163566.a.a	ENSGT00950000183157.a.a.b.d	ENSGT00940000163679	ENSGT00950000183060.a.a.d.a	ENSGT01070000253744.a.a.a.b.a.a	ENSGT00390000001316	ENSGT00940000161391.b	ENSGT00940000153167.A.b	ENSGT00940000161162	ENSGT00530000063205.A	ENSGT00390000002365	ENSGT00940000156947.i	ENSGT00390000008664	ENSGT00940000159005.c.b.a	ENSGT00390000013443.c.j #22	ENSGT00940000159788.a.b ##21	ENSGT00940000159613	ENSGT00390000009759	ENSGT00950000182957.b.a.b.a.a	ENSGT00940000155366.a	ENSGT00390000016020	ENSGT00390000005386	ENSGT00940000166978.a	ENSGT01100000263533.b.b.a.a.a.a.a.a.b	ENSGT00940000166978.b	ENSGT00940000164305	ENSGT00940000160222.b	ENSGT00940000161420.g.a	ENSGT00940000158857	ENSGT00940000159005.c.b.b
Pleuronectoidei	ANCESTRAL SPECIES	26	ENSGT00940000159507	ENSGT00950000182958.b.a.a.a.a.a	ENSGT00940000170782	ENSGT00390000003292	ENSGT00940000170908	ENSGT00940000157747	ENSGT00940000157636	ENSGT00940000165262	ENSGT00940000156614.a	ENSGT00550000074913	ENSGT00390000017551	ENSGT00940000156254.o.a	ENSGT00940000157932.m.b	ENSGT00940000159416	ENSGT00940000159005.c.b.a	ENSGT00390000013443.c.j #22	ENSGT00940000159788.a.b ##21	ENSGT00940000159613	ENSGT00390000009759	ENSGT00950000182957.b.a.b.a.a	ENSGT00390000016020	ENSGT00390000005386	ENSGT00940000166978.a	ENSGT00940000166978.b	ENSGT00940000164305	ENSGT00940000160222.b	ENSGT00940000161420.g.a	ENSGT00940000158857	ENSGT00940000159005.c.b.b	ENSGT00940000173625	ENSGT00940000160446
Tongue sole	MODERN SPECIES	19	capn2l (ENSCSEG00000020954)	capn2b (ENSCSEG00000020950)	capn1b (ENSCSEG00000020948)	mrps28 (ENSCSEG00000020947)	sde2 (ENSCSEG00000020946)	SDK1 (ENSCSEG00000020941)	GNA12 (ENSCSEG00000020937)	ENSCSEG00000020936	ENSCSEG00000020935	EIF3B (ENSCSEG00000020931)	brat1 (ENSCSEG00000020928)	grapb (ENSCSEG00000020926)	ENSCSEG00000020925	SLC5A10 (ENSCSEG00000020922)	ENSCSEG00000020921	cdc37 (ENSCSEG00000020920) #22	PDE4A (ENSCSEG00000020919) ##21	ENSCSEG00000020918	ears2 (ENSCSEG00000020916)	ENSCSEG00000020914	txndc11 (ENSCSEG00000020908)	BFAR (ENSCSEG00000020907)	ENSCSEG00000020905	ENSCSEG00000020904	ENSCSEG00000020903	uncx4.1 (ENSCSEG00000020875)	ubn1 (ENSCSEG00000020873)	ENSCSEG00000020870	ENSCSEG00000020868	GPR108 (ENSCSEG00000020865)	ENSCSEG00000020862
Turbot	MODERN SPECIES	20	ENSSMAG00000021272	ENSSMAG00000021273	ENSSMAG00000029122	ENSSMAG00000021270	ENSSMAG00000026886	GNA12 (ENSSMAG00000021269)	ENSSMAG00000021268	ENSSMAG00000021267	ENSSMAG00000021266	ENSSMAG00000021264	ENSSMAG00000025929	grapb (ENSSMAG00000021262)	ENSSMAG00000021261	SLC5A10 (ENSSMAG00000021260)	ENSSMAG00000021259	ENSSMAG00000021258 #22	ENSSMAG00000021257 ##21	ENSSMAG00000021256	ENSSMAG00000021255	ENSSMAG00000021254	ENSSMAG00000021253	ENSSMAG00000021252	ENSSMAG00000021251	ENSSMAG00000021250	ENSSMAG00000021249	uncx4.1 (ENSSMAG00000021248)	ENSSMAG00000021247	ENSSMAG00000021246	ENSSMAG00000021245	ENSSMAG00000021244	ENSSMAG00000021243
Carangaria_A	ANCESTRAL SPECIES	14	ENSGT00940000157752	ENSGT00940000163566.a.a	ENSGT00950000183157.a.a.b.d	ENSGT00940000163679	ENSGT00950000183060.a.a.d.a	ENSGT01070000253744.a.a.a.b.a.a	ENSGT00390000001316	ENSGT00940000161391.b	ENSGT00940000153167.A.b	ENSGT00940000161162	ENSGT00530000063205.A	ENSGT00390000002365	ENSGT00940000156947.i	ENSGT00390000008664	ENSGT00940000159005.c.b.a	ENSGT00390000013443.c.j #22	ENSGT00940000159788.a.b ##21	ENSGT00940000159613	ENSGT00390000009759	ENSGT00950000182957.b.a.b.a.a	ENSGT00940000155366.a	ENSGT00390000016020	ENSGT00390000005386	ENSGT00940000166978.a	ENSGT01100000263533.b.b.a.a.a.a.a.a.b	ENSGT00940000166978.b	ENSGT00940000164305	ENSGT00940000160222.b	ENSGT00940000161420.g.a	ENSGT00940000158857	ENSGT00940000159005.c.b.b
Seriola	ANCESTRAL SPECIES	18	ENSGT00940000163566.a.a	ENSGT00950000183157.a.a.b.d	ENSGT00940000163679	ENSGT00950000183060.a.a.d.a	ENSGT01070000253744.a.a.a.b.a.a	ENSGT00390000001316	ENSGT00940000161391.b	ENSGT00940000153167.A.b	ENSGT00940000161162	ENSGT00530000063205.A	ENSGT00390000002365	ENSGT00940000156947.i	ENSGT00390000008664	ENSGT00940000159005.c.b.a.r	ENSGT00940000159005.c.b.a.q	ENSGT00390000013443.c.j #22	ENSGT00940000159788.a.b ##21	ENSGT00940000159613	ENSGT00390000009759	ENSGT00950000182957.b.a.b.a.a	ENSGT00940000155366.a	ENSGT00390000016020	ENSGT00390000005386	ENSGT00940000166978.a	ENSGT01100000263533.b.b.a.a.a.a.a.a.b	ENSGT00940000166978.b	ENSGT00940000164305	ENSGT00940000160222.b	ENSGT00940000161420.g.a	ENSGT00940000158857	ENSGT00940000159005.c.b.b
Greater amberjack	MODERN SPECIES	13	ENSSDUG00000015000	ENSSDUG00000014952	ttyh3b (ENSSDUG00000014909)	ENSSDUG00000014878	ENSSDUG00000014865	mad1l1 (ENSSDUG00000014653)	ELFN1 (ENSSDUG00000014594)	parn (ENSSDUG00000014555)	REXO5 (ENSSDUG00000014528)	ENSSDUG00000014509	thumpd1 (ENSSDUG00000014502)	AXIN1 (ENSSDUG00000014474)	GTF3C1 (ENSSDUG00000014411)	ENSSDUG00000014363	ENSSDUG00000014315	cdc37 (ENSSDUG00000014231) #22	ENSSDUG00000014197 ##21	ENSSDUG00000014077	ears2 (ENSSDUG00000014030)	ENSSDUG00000014001	ENSSDUG00000013993	txndc11 (ENSSDUG00000013981)	BFAR (ENSSDUG00000013951)	ENSSDUG00000013925	ENSSDUG00000013915	ENSSDUG00000013904	ENSSDUG00000013884	micall2b (ENSSDUG00000013851)	uncx4.1 (ENSSDUG00000013842)	ENSSDUG00000013809	ENSSDUG00000013794
Yellowtail amberjack	MODERN SPECIES	2394								ENSSLDG00000007603	REXO5 (ENSSLDG00000007641)	ENSSLDG00000007672	thumpd1 (ENSSLDG00000007694)	AXIN1 (ENSSLDG00000007717)	GTF3C1 (ENSSLDG00000007782)	ENSSLDG00000007895	ENSSLDG00000007941	cdc37 (ENSSLDG00000007959) #22	ENSSLDG00000007985 ##21
Barramundi perch	MODERN SPECIES	18									ENSLCAG00010001807	ENSLCAG00010001808	ENSLCAG00010001812	ENSLCAG00010001816	ENSLCAG00010001820	ENSLCAG00010001823	ENSLCAG00010001832	cdc37 (ENSLCAG00010001846) #22	ENSLCAG00010001849	ENSLCAG00010001869 ##21
Eupercaria	ANCESTRAL SPECIES	2	ENSGT00940000157752	ENSGT00940000163566.a.a	ENSGT00950000183157.a.a.b.d	ENSGT00940000163679	ENSGT00950000183060.a.a.d.a	ENSGT01070000253744.a.a.a.b.a.a	ENSGT00390000001316	ENSGT00940000161391.b	ENSGT00940000153167.A.b	ENSGT00940000161162	ENSGT00530000063205.A	ENSGT00390000002365	ENSGT00940000156947.i	ENSGT00390000008664	ENSGT00940000159005.c.b.a	ENSGT00390000013443.c.j #22	ENSGT00940000159788.a.b ##21	ENSGT00940000159613	ENSGT00390000009759	ENSGT00950000182957.b.a.b.a.a	ENSGT00940000155366.a	ENSGT00390000016020	ENSGT00390000005386	ENSGT00940000166978.a	ENSGT01100000263533.b.b.a.a.a.a.a.a.b	ENSGT00940000166978.b	ENSGT00940000164305	ENSGT00940000160222.b	ENSGT00940000161420.g.a	ENSGT00940000158857	ENSGT00940000159005.c.b.b
Tetraodontidae	ANCESTRAL SPECIES	16	ENSGT00950000182975.a.b.a.b	ENSGT00940000163377.a.b.a	ENSGT00940000160446	ENSGT00940000173625	ENSGT00940000159005.c.b.b	ENSGT00940000158857	ENSGT00940000161420.g.a	ENSGT00940000160222.b	ENSGT00940000164305	ENSGT00940000166978.b	ENSGT00390000005386	ENSGT00390000002365	ENSGT00940000156947.i	ENSGT00390000008664	ENSGT00940000159005.c.b.a	ENSGT00390000013443.c.j #22	ENSGT00940000159788.a.b ##21	ENSGT00940000159613	ENSGT00390000009759	ENSGT00950000182957.b.a.b.a.a	ENSGT00940000155366.a	ENSGT00390000016020	ENSGT00530000063205.A	ENSGT00940000161162	ENSGT00940000153167.A.b	ENSGT00940000161391.b	ENSGT00390000001316	ENSGT01070000253744.a.a.a.b.a.a	ENSGT00950000183060.a.a.d.a	ENSGT00940000163679	ENSGT00950000183157.a.a.b.d
Tetraodon	MODERN SPECIES	10	LPAR2 (ENSTNIG00000003514)	ENSTNIG00000000461	CAMSAP3 (ENSTNIG00000003513)	ENSTNIG00000000033	ENSTNIG00000001966	GPR108 (ENSTNIG00000008237)	ENSTNIG00000008238	uncx4.1 (ENSTNIG00000008239)	micall2b (ENSTNIG00000008240)	ENSTNIG00000008241	ENSTNIG00000008242	BFAR (ENSTNIG00000008243)	thumpd1 (ENSTNIG00000001584)	AXIN1 (ENSTNIG00000008244)	ENSTNIG00000008245	cdc37 (ENSTNIG00000000203) #22	PDE4A (ENSTNIG00000008246) ##21	ENSTNIG00000008247	ears2 (ENSTNIG00000008248)	ENSTNIG00000000044	txndc11 (ENSTNIG00000008249)	ENSTNIG00000008250	ENSTNIG00000008251	parn (ENSTNIG00000008252)	ENSTNIG00000008253	ELFN1 (ENSTNIG00000008254)	mad1l1 (ENSTNIG00000008255)	ENSTNIG00000000470	ENSTNIG00000008256	ttyh3b (ENSTNIG00000008257)	ENSTNIG00000008258
Fugu	MODERN SPECIES	8	ENSTRUG00000015916	GPR108 (ENSTRUG00000015858)	ENSTRUG00000022415	ENSTRUG00000027157	uncx4.1 (ENSTRUG00000015845)	ENSTRUG00000015829	ENSTRUG00000015793	ENSTRUG00000015687	BFAR (ENSTRUG00000015671)	thumpd1 (ENSTRUG00000015656)	AXIN1 (ENSTRUG00000015610)	ENSTRUG00000029280	ENSTRUG00000027121	ENSTRUG00000026493	ENSTRUG00000031480	cdc37 (ENSTRUG00000015538) #22	ENSTRUG00000015440 ##21	ENSTRUG00000015389	ears2 (ENSTRUG00000015357)	ENSTRUG00000015349	ENSTRUG00000033325	txndc11 (ENSTRUG00000015334)	ENSTRUG00000021539	ENSTRUG00000015295	parn (ENSTRUG00000015208)	ELFN1 (ENSTRUG00000015197)	ENSTRUG00000020261	mad1l1 (ENSTRUG00000015158)	ENSTRUG00000033311	ENSTRUG00000029257	ttyh3b (ENSTRUG00000014928)
Eupecaria_A	ANCESTRAL SPECIES	3	ENSGT00940000157752	ENSGT00940000163566.a.a	ENSGT00950000183157.a.a.b.d	ENSGT00940000163679	ENSGT00950000183060.a.a.d.a	ENSGT01070000253744.a.a.a.b.a.a	ENSGT00390000001316	ENSGT00940000161391.b	ENSGT00940000153167.A.b	ENSGT00940000161162	ENSGT00530000063205.A	ENSGT00390000002365	ENSGT00940000156947.i	ENSGT00390000008664	ENSGT00940000159005.c.b.a	ENSGT00390000013443.c.j #22	ENSGT00940000159788.a.b ##21	ENSGT00940000159613	ENSGT00390000009759	ENSGT00950000182957.b.a.b.a.a	ENSGT00940000155366.a	ENSGT00390000016020	ENSGT00390000005386	ENSGT00940000166978.a	ENSGT01100000263533.b.b.a.a.a.a.a.a.b	ENSGT00940000166978.b	ENSGT00940000164305	ENSGT00940000160222.b	ENSGT00940000161420.g.a	ENSGT00940000158857	ENSGT00940000159005.c.b.b
Ballan wrasse	MODERN SPECIES	7	ttyh3b (ENSLBEG00000008948)	ENSLBEG00000009019	ENSLBEG00000009047	mad1l1 (ENSLBEG00000009069)	ELFN1 (ENSLBEG00000009105)	ENSLBEG00000009130	parn (ENSLBEG00000009167)	REXO5 (ENSLBEG00000009276)	ENSLBEG00000009314	thumpd1 (ENSLBEG00000009349)	AXIN1 (ENSLBEG00000009366)	ENSLBEG00000009400	ENSLBEG00000009507	ENSLBEG00000009534	ENSLBEG00000009568	cdc37 (ENSLBEG00000009577) #22	ENSLBEG00000009634 ##21	ENSLBEG00000009716	ears2 (ENSLBEG00000009775)	ENSLBEG00000009859	ENSLBEG00000009937	txndc11 (ENSLBEG00000009961)	BFAR (ENSLBEG00000009997)	ENSLBEG00000010044	ENSLBEG00000010165	ENSLBEG00000010298	micall2b (ENSLBEG00000010420)	uncx4.1 (ENSLBEG00000010466)	ubn1 (ENSLBEG00000010488)	ENSLBEG00000010513	GPR108 (ENSLBEG00000010542)
Eupecaria_B	ANCESTRAL SPECIES	1	ENSGT00940000157752	ENSGT00940000163566.a.a	ENSGT00950000183157.a.a.b.d	ENSGT00940000163679	ENSGT00950000183060.a.a.d.a	ENSGT01070000253744.a.a.a.b.a.a	ENSGT00390000001316	ENSGT00940000161391.b	ENSGT00940000153167.A.b	ENSGT00940000161162	ENSGT00530000063205.A	ENSGT00390000002365	ENSGT00940000156947.i	ENSGT00390000008664	ENSGT00940000159005.c.b.a	ENSGT00390000013443.c.j #22	ENSGT00940000159788.a.b ##21	ENSGT00940000159613	ENSGT00390000009759	ENSGT00950000182957.b.a.b.a.a	ENSGT00940000155366.a	ENSGT00390000016020	ENSGT00390000005386	ENSGT00940000166978.a	ENSGT01100000263533.b.b.a.a.a.a.a.a.b	ENSGT00940000166978.b	ENSGT00940000164305	ENSGT00940000160222.b	ENSGT00940000161420.g.a	ENSGT00940000158857	ENSGT00940000159005.c.b.b
Perciformes	ANCESTRAL SPECIES	2	ENSGT00940000157752	ENSGT00940000163566.a.a	ENSGT00950000183157.a.a.b.d	ENSGT00940000163679	ENSGT00950000183060.a.a.d.a	ENSGT01070000253744.a.a.a.b.a.a	ENSGT00390000001316	ENSGT00940000161391.b	ENSGT00940000153167.A.b	ENSGT00940000161162	ENSGT00530000063205.A	ENSGT00390000002365	ENSGT00940000156947.i	ENSGT00390000008664	ENSGT00940000159005.c.b.a	ENSGT00390000013443.c.j #22	ENSGT00940000159788.a.b ##21	ENSGT00940000159613	ENSGT00390000009759	ENSGT00950000182957.b.a.b.a.a	ENSGT00940000155366.a	ENSGT00390000016020	ENSGT00390000005386	ENSGT00940000166978.a	ENSGT01100000263533.b.b.a.a.a.a.a.a.b	ENSGT00940000166978.b	ENSGT00940000164305	ENSGT00940000160222.b	ENSGT00940000161420.g.a	ENSGT00940000158857	ENSGT00940000159005.c.b.b
Perciformes_a	ANCESTRAL SPECIES		ENSGT00940000157752	ENSGT00940000163566.a.a	ENSGT00950000183157.a.a.b.d	ENSGT00940000163679	ENSGT00950000183060.a.a.d.a	ENSGT01070000253744.a.a.a.b.a.a	ENSGT00390000001316	ENSGT00940000161391.b	ENSGT00940000153167.A.b	ENSGT00940000161162	ENSGT00530000063205.A	ENSGT00390000002365	ENSGT00940000156947.i	ENSGT00390000008664	ENSGT00940000159005.c.b.a	ENSGT00390000013443.c.j #22	ENSGT00940000159788.a.b ##21	ENSGT00940000159613	ENSGT00390000009759	ENSGT00980000203417	ENSGT00390000016020	ENSGT00390000005386	ENSGT00940000166978.a	ENSGT01100000263533.b.b.a.a.a.a.a.a.b	ENSGT00940000166978.b	ENSGT00940000164305	ENSGT00940000160222.b	ENSGT00940000161420.g.a	ENSGT00940000158857	ENSGT00940000159005.c.b.b	ENSGT00940000173625
Channel bull blenny	MODERN SPECIES		mad1l1 (ENSCGOG00000004998)	parn (ENSCGOG00000003961)	REXO5 (ENSCGOG00000003901)	ENSCGOG00000003864	thumpd1 (ENSCGOG00000003848)	ENSCGOG00000003799	ENSCGOG00000003792	ENSCGOG00000003790	ENSCGOG00000003787	ENSCGOG00000003773	ENSCGOG00000003770	AXIN1 (ENSCGOG00000003763)	ENSCGOG00000003659	ENSCGOG00000003652	ENSCGOG00000003646	cdc37 (ENSCGOG00000003581) #22	ENSCGOG00000002311 ##21	ENSCGOG00000002159	ears2 (ENSCGOG00000002073)	ENSCGOG00000002068	ENSCGOG00000002065	ENSCGOG00000002063	txndc11 (ENSCGOG00000002026)	BFAR (ENSCGOG00000002022)	ENSCGOG00000002021	ENSCGOG00000002020	ENSCGOG00000002019	ENSCGOG00000002013	ENSCGOG00000002011	ENSCGOG00000002009	ENSCGOG00000002006
Pike perch	MODERN SPECIES	8	rasd3 (ENSSLUG00000001029)	ENSSLUG00000001024	ENSSLUG00000001019	ttyh3b (ENSSLUG00000001009)	ENSSLUG00000000998	mad1l1 (ENSSLUG00000000988)	ELFN1 (ENSSLUG00000000982)	ENSSLUG00000000980	parn (ENSSLUG00000000962)	ENSSLUG00000000950	ENSSLUG00000000946	thumpd1 (ENSSLUG00000000944)	AXIN1 (ENSSLUG00000000939)	ENSSLUG00000000934	ENSSLUG00000000923	cdc37 (ENSSLUG00000000907) #22	ENSSLUG00000000854 ##21	ENSSLUG00000000818	ears2 (ENSSLUG00000000809)	ENSSLUG00000000805	ENSSLUG00000000801	ENSSLUG00000000794	ENSSLUG00000000789	ENSSLUG00000000786	txndc11 (ENSSLUG00000000778)	BFAR (ENSSLUG00000000773)	ENSSLUG00000000768	ENSSLUG00000000763	ENSSLUG00000000754	ENSSLUG00000000535	micall2b (ENSSLUG00000000451)
Eupecaria_C	ANCESTRAL SPECIES	14	ENSGT00940000157752	ENSGT00940000163566.a.a	ENSGT00950000183157.a.a.b.d	ENSGT00940000163679	ENSGT00950000183060.a.a.d.a	ENSGT01070000253744.a.a.a.b.a.a	ENSGT00390000001316	ENSGT00940000161391.b	ENSGT00940000153167.A.b	ENSGT00940000161162	ENSGT00530000063205.A	ENSGT00390000002365	ENSGT00940000156947.i	ENSGT00390000008664	ENSGT00940000159005.c.b.a	ENSGT00390000013443.c.j #22	ENSGT00940000159788.a.b ##21	ENSGT00940000159613	ENSGT00390000009759	ENSGT00950000182957.b.a.b.a.a	ENSGT00940000155366.a	ENSGT00390000016020	ENSGT00390000005386	ENSGT00940000166978.a	ENSGT01100000263533.b.b.a.a.a.a.a.a.b	ENSGT00940000166978.b	ENSGT00940000164305	ENSGT00940000160222.b	ENSGT00940000161420.g.a	ENSGT00940000158857	ENSGT00940000159005.c.b.b
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	13	ENSGT00940000157752	ENSGT00940000163566.a.a	ENSGT00950000183157.a.a.b.d	ENSGT00940000163679	ENSGT00950000183060.a.a.d.a	ENSGT01070000253744.a.a.a.b.a.a	ENSGT00390000001316	ENSGT00940000161391.b	ENSGT00940000153167.A.b	ENSGT00940000161162	ENSGT00530000063205.A	ENSGT00390000002365	ENSGT00940000156947.i	ENSGT00390000008664	ENSGT00940000159005.c.b.a	ENSGT00390000013443.c.j #22	ENSGT00940000159788.a.b ##21	ENSGT00940000159613	ENSGT00390000009759	ENSGT00950000182957.b.a.b.a.a	ENSGT00940000155366.a	ENSGT00390000016020	ENSGT00390000005386	ENSGT00940000166978.a	ENSGT01100000263533.b.b.a.a.a.a.a.a.b	ENSGT00940000166978.b	ENSGT00940000164305	ENSGT00940000160222.b	ENSGT00940000161420.g.a	ENSGT00940000158857	ENSGT00940000159005.c.b.b
Large yellow croaker	MODERN SPECIES	481	ENSLCRG00005003044	ENSLCRG00005003040	mad1l1 (ENSLCRG00005003030)	ELFN1 (ENSLCRG00005003022)	parn (ENSLCRG00005002994)	REXO5 (ENSLCRG00005002974)	ENSLCRG00005002968	thumpd1 (ENSLCRG00005002962)	AXIN1 (ENSLCRG00005002958)	GTF3C1 (ENSLCRG00005002951)	ENSLCRG00005002940	ENSLCRG00005002938	ENSLCRG00005002923	ENSLCRG00005002921	ENSLCRG00005002918	cdc37 (ENSLCRG00005002905) #22	ENSLCRG00005002563 ##21	ENSLCRG00005002313	ears2 (ENSLCRG00005002306)	ENSLCRG00005002295	ENSLCRG00005002290	txndc11 (ENSLCRG00005002247)	BFAR (ENSLCRG00005002239)	ENSLCRG00005002235	ENSLCRG00005002233	ENSLCRG00005002227	ENSLCRG00005002145	micall2b (ENSLCRG00005002136)	ubn1 (ENSLCRG00005002134)	uncx4.1 (ENSLCRG00005002131)	ENSLCRG00005002128
European seabass	MODERN SPECIES	20	ENSDLAG00005021665	ENSDLAG00005032894	ENSDLAG00005021673	ENSDLAG00005021723	ENSDLAG00005033877	ENSDLAG00005021738	ENSDLAG00005026704	ENSDLAG00005021866	REXO5 (ENSDLAG00005023197)	ENSDLAG00005023205	ENSDLAG00005028470	ENSDLAG00005028064	ENSDLAG00005023276	ENSDLAG00005026928	ENSDLAG00005005295	cdc37 (ENSDLAG00005028123) #22	ENSDLAG00005023308 ##21	ENSDLAG00005023326	ENSDLAG00005023349	ENSDLAG00005023580	ENSDLAG00005023667	ENSDLAG00005023672	ENSDLAG00005031543	ENSDLAG00005023679	ENSDLAG00005023692	micall2b (ENSDLAG00005023720)	uncx4.1 (ENSDLAG00005023733)	ENSDLAG00005023735	ENSDLAG00005030340	ENSDLAG00005023749	ENSDLAG00005023756
Gilthead seabream	MODERN SPECIES		ENSSAUG00010002290	ENSSAUG00010002285	mad1l1 (ENSSAUG00010002280)	ELFN1 (ENSSAUG00010002277)	parn (ENSSAUG00010002243)	REXO5 (ENSSAUG00010002207)	ENSSAUG00010002200	thumpd1 (ENSSAUG00010002191)	AXIN1 (ENSSAUG00010002177)	GTF3C1 (ENSSAUG00010002160)	ENSSAUG00010002156	ENSSAUG00010002152	ENSSAUG00010002146	ENSSAUG00010002136	ENSSAUG00010002123	cdc37 (ENSSAUG00010002095) #22	ENSSAUG00010001209 ##21	ENSSAUG00010001138	ears2 (ENSSAUG00010001122)	ENSSAUG00010001109	ENSSAUG00010001105	txndc11 (ENSSAUG00010001101)	BFAR (ENSSAUG00010001096)	ENSSAUG00010001093	ENSSAUG00010001092	ENSSAUG00010001090	ENSSAUG00010000474	micall2b (ENSSAUG00010000330)	ENSSAUG00010000324	uncx4.1 (ENSSAUG00010000320)	ENSSAUG00010000315
Pinecone sodierfish	MODERN SPECIES		ENSMMDG00005000855	FSCN1 (ENSMMDG00005000853)	ENSMMDG00005000848	ttyh3b (ENSMMDG00005000846)	ENSMMDG00005000826	ENSMMDG00005000821	mad1l1 (ENSMMDG00005000797)	ELFN1 (ENSMMDG00005000790)	parn (ENSMMDG00005000766)	ENSMMDG00005000757	ENSMMDG00005000754	thumpd1 (ENSMMDG00005000751)	AXIN1 (ENSMMDG00005000749)	GTF3C1 (ENSMMDG00005000438)	ENSMMDG00005000281	cdc37 (ENSMMDG00005000256) #22	ENSMMDG00005000221 ##21	ENSMMDG00005000169	ears2 (ENSMMDG00005000140)	ENSMMDG00005000119	litaf (ENSMMDG00005000111)	txndc11 (ENSMMDG00005000105)	BFAR (ENSMMDG00005000091)	ENSMMDG00005000086	ENSMMDG00005023156	ENSMMDG00005023150	ENSMMDG00005022357	micall2b (ENSMMDG00005022315)	uncx4.1 (ENSMMDG00005022314)	ENSMMDG00005022312	ENSMMDG00005022310
Spotted gar	MODERN SPECIES	672	spc24 (ENSLOCG00000007731)	keap1b (ENSLOCG00000007721) #19	s1pr5b (ENSLOCG00000018296) #18	fdx2 (ENSLOCG00000007698) #25	ENSLOCG00000007686 #26	foxd7 (ENSLOCG00000018295)	ecsit (ENSLOCG00000007679)	ENSLOCG00000007669	prkcsh (ENSLOCG00000007655)	elavl3 (ENSLOCG00000007647)	ENSLOCG00000007635	DOCK6 (ENSLOCG00000007613)	kank2 (ENSLOCG00000007602)	PDE4A (ENSLOCG00000007575) #21	ENSLOCG00000007564	cdc37 (ENSLOCG00000007552) #22	TYK2 (ENSLOCG00000007532) #23	raver1 (ENSLOCG00000007500) #24	ENSLOCG00000007473	s1pr2 (ENSLOCG00000018294) #31	dnmt1 (ENSLOCG00000007421) #33	eif3g (ENSLOCG00000007404) #34	ppan (ENSLOCG00000007381) #35	ENSLOCG00000007369	ENSLOCG00000007361	ENSLOCG00000007348	ENSLOCG00000007342	mfap4.2 (ENSLOCG00000007333)	trip10a (ENSLOCG00000007300)	ENSLOCG00000007275	VAV1 (ENSLOCG00000007259)
Reedfish	MODERN SPECIES	8	FRMD5 (ENSECRG00000021050)	WDR76 (ENSECRG00000021030)	ENSECRG00000021007	ctsh (ENSECRG00000020983)	RASGRF1 (ENSECRG00000020947)	ENSECRG00000020931	ANPEP (ENSECRG00000020900)	ANPEP (ENSECRG00000018716)	ap3s2 (ENSECRG00000018497)	si:dkey-12e7.1 (ENSECRG00000018486)	ENSECRG00000018446	arpin (ENSECRG00000018421)	bnip2 (ENSECRG00000018372)	gtf2a2 (ENSECRG00000018344)	GCNT3 (ENSECRG00000018327)	cdc37 (ENSECRG00000018208) #22	TYK2 (ENSECRG00000018110) #23	raver1 (ENSECRG00000018070) #24	nr5a5 (ENSECRG00000017711)	ENSECRG00000017476	ENSECRG00000017358	trip10a (ENSECRG00000017283)	SH2D3A (ENSECRG00000017240)	prmt1 (ENSECRG00000017184)	VAV1 (ENSECRG00000017128)	olfm2b (ENSECRG00000017093)	ENSECRG00000022401	ENSECRG00000022394	notch3 (ENSECRG00000022132)	galk2 (ENSECRG00000022025)	FGF7 (ENSECRG00000022020)
Elephant shark	MODERN SPECIES	1665														ENSCMIG00000016399	ENSCMIG00000016401	CDC37 (ENSCMIG00000016408) #22	TYK2 (ENSCMIG00000016465) #23	RAVER1 (ENSCMIG00000016557) #24	fdx2 (ENSCMIG00000016563) #25	ENSCMIG00000016568	ENSCMIG00000016569	ENSCMIG00000000200	ENSCMIG00000000211	ENSCMIG00000000259	ENSCMIG00000000270	ENSCMIG00000000277	ENSCMIG00000000287	CC2D1A (ENSCMIG00000000295)	ENSCMIG00000000320	ENSCMIG00000000325	ENSCMIG00000000335
Cyclostomata	ANCESTRAL SPECIES																	ENSGT00390000013443.c #22
Hagfish	MODERN SPECIES	1321												ENSEBUG00000016300	ENSEBUG00000003533	ENSEBUG00000009707	triap1 (ENSEBUG00000013834)	ENSEBUG00000010914 #22	ENSEBUG00000012939	ENSEBUG00000003030 #24	ENSEBUG00000001928	ENSEBUG00000004158	ENSEBUG00000011356	ENSEBUG00000009686	ENSEBUG00000000844	ENSEBUG00000016494	ENSEBUG00000005297	ENSEBUG00000012970	rhoj (ENSEBUG00000000468)	ENSEBUG00000015078	PPP2R5E (ENSEBUG00000010213)	ENSEBUG00000002244	ENSEBUG00000008946
Vertebrata	ANCESTRAL SPECIES																	ENSGT00390000013443.d ##22
Gnathostomata	ANCESTRAL SPECIES	527																ENSGT00390000013443.d ##22	ENSGT00940000155120	ENSGT00940000155640	ENSGT00940000154396	ENSGT00390000000375	ENSGT00940000161373	ENSGT00390000002955
Euteleostomi	ANCESTRAL SPECIES	88																ENSGT00390000013443.d ##22	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154396.a	ENSGT00390000000375	ENSGT00940000161373	ENSGT00390000002955	ENSGT00530000063839	ENSGT00390000009531	ENSGT00390000011483	ENSGT00390000008296.b.b	ENSGT00390000008296.b.a.a	ENSGT00390000017970	ENSGT00940000154930	ENSGT00940000153617.D
Actinopterygii	ANCESTRAL SPECIES	249														ENSGT00940000156266	ENSGT00940000159527	ENSGT00390000013443.d ##22	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154396.a	ENSGT00390000000375	ENSGT00940000161373	ENSGT00390000002955	ENSGT00530000063839	ENSGT00390000009531	ENSGT00390000011483	ENSGT00390000008296.b.b	ENSGT00390000017970	ENSGT00940000166601
Neopterygii	ANCESTRAL SPECIES	183													ENSGT00940000159394	ENSGT01030000234626.D	ENSGT00940000159527	ENSGT00390000013443.d ##22	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154396.a	ENSGT00390000000375	ENSGT00940000161373	ENSGT00390000002955	ENSGT00530000063839	ENSGT00390000009531	ENSGT00390000011483	ENSGT00390000008296.b.b	ENSGT00390000017970	ENSGT00940000166601	ENSGT00940000157066	ENSGT00940000153771.B
Osteoglossocephalai	ANCESTRAL SPECIES	202								ENSGT00390000009349	ENSGT00940000158646	ENSGT01100000263580	ENSGT00940000160109	ENSGT00940000161928	ENSGT00940000155640.a	ENSGT00950000186109	ENSGT00390000006843	ENSGT00390000013443.d ##22	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000155640.b	ENSGT00940000154396.a	ENSGT00390000000375	ENSGT00940000161373	ENSGT00390000002955	ENSGT00530000063839	ENSGT00390000009531	ENSGT00390000011483	ENSGT00390000008296.b.b	ENSGT00940000166601	ENSGT00940000157066.p	ENSGT00390000018845.e	ENSGT00940000156411
Clupeocephala	ANCESTRAL SPECIES	8	ENSGT00390000005101	ENSGT01030000234558.D.a	ENSGT00940000157589	ENSGT00940000166736	ENSGT00530000063085.B	ENSGT00940000159387.f	ENSGT00390000009349	ENSGT00940000158646	ENSGT01100000263580	ENSGT00940000160109	ENSGT00940000161928	ENSGT00940000155640.a	ENSGT00940000164450.a	ENSGT00950000186109	ENSGT00390000006843	ENSGT00390000013443.d ##22	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000155640.b	ENSGT00940000154396.a	ENSGT00390000000375	ENSGT00940000161373	ENSGT00390000002955	ENSGT00530000063839	ENSGT00390000009531	ENSGT00390000011483	ENSGT00390000008296.b.b	ENSGT00940000166601	ENSGT00940000157066.p	ENSGT00390000018845.e	ENSGT00940000156411
Otomorpha	ANCESTRAL SPECIES	28	ENSGT00940000157216	ENSGT00940000163543.b	ENSGT00940000154687.B.q.a	ENSGT00940000154130.a.b.e	ENSGT00390000005101	ENSGT01030000234558.D.a	ENSGT00940000157589	ENSGT00530000063085.B	ENSGT00940000159387.f	ENSGT00390000009349	ENSGT00940000158646	ENSGT01100000263580	ENSGT00940000160109	ENSGT00940000161928	ENSGT00390000006843	ENSGT00390000013443.d ##22	ENSGT00940000155120	ENSGT00390000012898	ENSGT01050000244924.a.a.a	ENSGT00940000156729	ENSGT00440000039527	ENSGT00390000006366	ENSGT00940000158994	ENSGT00950000183096.a.b	ENSGT00940000161837.c.a	ENSGT00940000158875	ENSGT00940000158571	ENSGT00940000163892.C.a.b	ENSGT01050000244941.A	ENSGT00940000158226	ENSGT00940000159886
Clupeiformes	ANCESTRAL SPECIES	131	ENSGT00940000157216	ENSGT00940000163543.b	ENSGT00940000154687.B.q.a	ENSGT00940000154130.a.b.e	ENSGT00390000005101	ENSGT01030000234558.D.a	ENSGT00940000157589	ENSGT00530000063085.B	ENSGT00940000159387.f	ENSGT00390000009349	ENSGT00940000158646	ENSGT01100000263580	ENSGT00940000160109	ENSGT00940000161928	ENSGT00390000006843	ENSGT00390000013443.d ##22	ENSGT00940000155120	ENSGT00390000012898	ENSGT01050000244924.a.a.a	ENSGT00940000156729	ENSGT00440000039527	ENSGT00390000006366	ENSGT00940000158994	ENSGT00940000161837.c.a	ENSGT00940000158875	ENSGT00940000158571	ENSGT00940000163892.C.a.b	ENSGT01050000244941.A	ENSGT00940000158226	ENSGT00940000159886	ENSGT00390000009872
Denticle herring	MODERN SPECIES	13	RC3H2 (ENSDCDG00000030539)	RABGAP1 (ENSDCDG00000030572)	STRBP (ENSDCDG00000030666)	SH2D3C (ENSDCDG00000030689)	urm1 (ENSDCDG00000030690)	CERCAM (ENSDCDG00000030700)	sardh (ENSDCDG00000030784)	dbh (ENSDCDG00000030809)	FAM163B (ENSDCDG00000030818)	ENSDCDG00000013819	slc27a4 (ENSDCDG00000013853)	ptgdsa (ENSDCDG00000014485)	ambp (ENSDCDG00000014490)	nrarpa (ENSDCDG00000014492)	ENSDCDG00000014496	cdc37l1 (ENSDCDG00000014501) ##22	ak3 (ENSDCDG00000014503)	ugcg (ENSDCDG00000014508)	PTBP3 (ENSDCDG00000014554)	hsdl2 (ENSDCDG00000015773)	KIAA1958 (ENSDCDG00000016246)	inip (ENSDCDG00000016249)	snx30 (ENSDCDG00000016260)	SLC46A2 (ENSDCDG00000016268)	ENSDCDG00000016277	PLPPR1 (ENSDCDG00000016284)	GRIN3A (ENSDCDG00000016296)	ENSDCDG00000016320	lpar1 (ENSDCDG00000016829)	MUSK (ENSDCDG00000016840)	rassf6 (ENSDCDG00000016858)
Atlantic herring	MODERN SPECIES	3	GOLT1B (ENSCHAG00000021273)	ENSCHAG00000021287	SH2D3C (ENSCHAG00000021308)	urm1 (ENSCHAG00000021479)	CERCAM (ENSCHAG00000021508)	sardh (ENSCHAG00000021789)	dbh (ENSCHAG00000023081)	FAM163B (ENSCHAG00000023100)	swi5 (ENSCHAG00000023103)	slc27a4 (ENSCHAG00000023124)	ptgdsa (ENSCHAG00000023462)	ENSCHAG00000023480	ambp (ENSCHAG00000023520)	nrarpa (ENSCHAG00000023538)	ENSCHAG00000023541	cdc37l1 (ENSCHAG00000023549) ##22	ugcg (ENSCHAG00000023552)	PTBP3 (ENSCHAG00000023592)	hsdl2 (ENSCHAG00000023904)	ENSCHAG00000023936	inip (ENSCHAG00000023941)	snx30 (ENSCHAG00000023944)	si:dkey-26g8.5 (ENSCHAG00000024012)	fbp1b (ENSCHAG00000024056)	PLK2 (ENSCHAG00000024068)	ENSCHAG00000024102	ENSCHAG00000024105	ENSCHAG00000024128	ENSCHAG00000024439	NAA25 (ENSCHAG00000024455)	pitpnb (ENSCHAG00000024528)
Otophysi	ANCESTRAL SPECIES	17	ENSGT00940000157216	ENSGT00940000163543.b	ENSGT00940000154687.B.q.a	ENSGT00940000154130.a.b.e	ENSGT00390000005101	ENSGT01030000234558.D.a	ENSGT00940000157589	ENSGT00530000063085.B	ENSGT00940000159387.f	ENSGT00390000009349	ENSGT00940000158646	ENSGT01100000263580	ENSGT00940000160109	ENSGT00940000161928	ENSGT00390000006843	ENSGT00390000013443.d ##22	ENSGT00940000155120	ENSGT00390000012898	ENSGT01050000244924.a.a.a	ENSGT00940000156729	ENSGT00440000039527	ENSGT00390000006366	ENSGT00940000155881	ENSGT00940000153510.b	ENSGT00940000157329	ENSGT00940000161622	ENSGT00510000047710	ENSGT00940000155967	ENSGT00940000156571	ENSGT00940000158733	ENSGT00940000158562
Characiphysae	ANCESTRAL SPECIES	40	ENSGT00940000163543.b	ENSGT00940000157216	ENSGT00940000154687.B.q.a	ENSGT00940000154130.a.b.e	ENSGT00390000005101	ENSGT01030000234558.D.a	ENSGT00940000157589	ENSGT00530000063085.B	ENSGT00940000159387.f	ENSGT00390000009349	ENSGT00940000158646	ENSGT01100000263580	ENSGT00940000160109	ENSGT00940000161928.d	ENSGT00390000006843	ENSGT00390000013443.d ##22	ENSGT00940000155120	ENSGT00390000012898	ENSGT01050000244924.a.a.a	ENSGT00940000156729	ENSGT00440000039527	ENSGT00390000006366	ENSGT00940000155881	ENSGT00940000153510.b	ENSGT00940000157329	ENSGT00940000161622	ENSGT00510000047710	ENSGT00940000155967	ENSGT00940000156571	ENSGT00940000158733	ENSGT00940000158562
Channel catfish	MODERN SPECIES	7	GPR21 (ENSIPUG00000021429)	RABGAP1 (ENSIPUG00000021311)	strbp (ENSIPUG00000021251)	SH2D3C (ENSIPUG00000020632)	urm1 (ENSIPUG00000020621)	cercam (ENSIPUG00000020562)	sardh (ENSIPUG00000020519)	dbh (ENSIPUG00000020489)	fam163b (ENSIPUG00000020478)	swi5 (ENSIPUG00000020474)	slc27a4 (ENSIPUG00000020449)	ptgdsa (ENSIPUG00000020408)	AMBP (ENSIPUG00000020385)	nrarp (ENSIPUG00000020378)	exd3 (ENSIPUG00000020343)	cdc37l1 (ENSIPUG00000020330) ##22	ak3 (ENSIPUG00000020312)	ugcg (ENSIPUG00000020297)	ptbp3 (ENSIPUG00000020195)	hsdl2 (ENSIPUG00000020109)	inip (ENSIPUG00000020090)	kiaa1958 (ENSIPUG00000020068)	lin54 (ENSIPUG00000020024)	cops4 (ENSIPUG00000019965)	plac8.2 (ENSIPUG00000019919)	srek1ip1 (ENSIPUG00000019898)	cwc27 (ENSIPUG00000019850)	ENSIPUG00000019844	ENSIPUG00000019835	ENSIPUG00000019829	ppwd1 (ENSIPUG00000019789)
Characiphysae_b	ANCESTRAL SPECIES	36	ENSGT00940000157216	ENSGT00940000163543.b	ENSGT00940000154687.B.q.a	ENSGT00940000154130.a.b.e	ENSGT00390000005101	ENSGT01030000234558.D.a	ENSGT00940000157589	ENSGT00530000063085.B	ENSGT00940000159387.f	ENSGT00390000009349	ENSGT00940000158646	ENSGT01100000263580	ENSGT00940000160109	ENSGT00940000161928.d	ENSGT00390000006843	ENSGT00390000013443.d ##22	ENSGT00940000155120	ENSGT00390000012898	ENSGT01050000244924.a.a.a	ENSGT00940000156729	ENSGT00440000039527	ENSGT00390000006366	ENSGT00940000155881	ENSGT00940000153510.b	ENSGT00940000157329	ENSGT00940000161622	ENSGT00510000047710	ENSGT00940000155967	ENSGT00940000156571	ENSGT00940000158733	ENSGT00940000158562
Characoidei	ANCESTRAL SPECIES	29	ENSGT00940000157216	ENSGT00940000163543.b	ENSGT00940000154687.B.q.a	ENSGT00940000154130.a.b.e	ENSGT00390000005101	ENSGT01030000234558.D.a	ENSGT00940000157589	ENSGT00530000063085.B	ENSGT00940000159387.f	ENSGT00390000009349	ENSGT00940000158646	ENSGT01100000263580	ENSGT00940000160109	ENSGT00940000161928.d	ENSGT00390000006843	ENSGT00390000013443.d ##22	ENSGT00940000155120	ENSGT00390000012898	ENSGT01050000244924.a.a.a	ENSGT00940000156729	ENSGT00440000039527	ENSGT00390000006366	ENSGT00940000155881	ENSGT00940000153510.b	ENSGT00940000157329	ENSGT00940000161622	ENSGT00510000047710	ENSGT00940000155967	ENSGT00940000156571	ENSGT00940000158733	ENSGT00940000158562
Red-bellied piranha	MODERN SPECIES	137	RABGAP1 (ENSPNAG00000017429)	GPR21 (ENSPNAG00000003472)	STRBP (ENSPNAG00000003471)	SH2D3C (ENSPNAG00000017213)	urm1 (ENSPNAG00000017145)	CERCAM (ENSPNAG00000017084)	sardh (ENSPNAG00000017076)	dbh (ENSPNAG00000017010)	FAM163B (ENSPNAG00000016959)	swi5 (ENSPNAG00000016943)	slc27a4 (ENSPNAG00000016932)	ptgdsa (ENSPNAG00000016858)	ambp (ENSPNAG00000016836)	nrarpa (ENSPNAG00000016775)	ENSPNAG00000016753	cdc37l1 (ENSPNAG00000003426) ##22	ak3 (ENSPNAG00000016648)	ugcg (ENSPNAG00000016623)	PTBP3 (ENSPNAG00000016577)	hsdl2 (ENSPNAG00000016507)	ENSPNAG00000016480
Mexicana tetra	MODERN SPECIES	12	STRBP (ENSAMXG00000043016)	SH2D3C (ENSAMXG00000006672)	ENSAMXG00000039049	urm1 (ENSAMXG00000042562)	CERCAM (ENSAMXG00000006650)	sardh (ENSAMXG00000006616)	ENSAMXG00000025065	dbh (ENSAMXG00000006576)	FAM163B (ENSAMXG00000036123)	swi5 (ENSAMXG00000006560)	slc27a4 (ENSAMXG00000006543)	ptgdsa (ENSAMXG00000043533)	ambp (ENSAMXG00000033400)	nrarpa (ENSAMXG00000024896)	ENSAMXG00000019494	cdc37l1 (ENSAMXG00000019524) ##22	ak3 (ENSAMXG00000039061)	ugcg (ENSAMXG00000019558)	PTBP3 (ENSAMXG00000003686)	hsdl2 (ENSAMXG00000003610)	hsdl2 (ENSAMXG00000003543)	MRPL49 (ENSAMXG00000003487)	znhit2 (ENSAMXG00000037639)	smyd4 (ENSAMXG00000003376)	SEZ6 (ENSAMXG00000006718)	PHF12 (ENSAMXG00000006728)	dhrs13a.1 (ENSAMXG00000038194)	dhrs13a.2 (ENSAMXG00000006741)	FCHSD2 (ENSAMXG00000006752)	fam168a (ENSAMXG00000006758)	plekhb1 (ENSAMXG00000006760)
Electric eel	MODERN SPECIES	7	ENSEEEG00000010350	RABGAP1 (ENSEEEG00000010368)	STRBP (ENSEEEG00000010540)	SH2D3C (ENSEEEG00000010675)	urm1 (ENSEEEG00000010677)	CERCAM (ENSEEEG00000010682)	sardh (ENSEEEG00000010699)	dbh (ENSEEEG00000010724)	FAM163B (ENSEEEG00000010726)	swi5 (ENSEEEG00000010727)	slc27a4 (ENSEEEG00000010731)	ptgdsa (ENSEEEG00000010750)	ambp (ENSEEEG00000010751)	nrarpa (ENSEEEG00000010756)	ENSEEEG00000010758	cdc37l1 (ENSEEEG00000010768) ##22	ak3 (ENSEEEG00000010770)	ugcg (ENSEEEG00000010771)	PTBP3 (ENSEEEG00000010789)	hsdl2 (ENSEEEG00000011182)	ENSEEEG00000011184	inip (ENSEEEG00000011186)	lin54 (ENSEEEG00000011191)	cops4 (ENSEEEG00000011200)	plac8.1 (ENSEEEG00000011203)	srek1ip1 (ENSEEEG00000011206)	cwc27 (ENSEEEG00000011208)	ADAMTS6 (ENSEEEG00000011210)	ppwd1 (ENSEEEG00000011211)	trim23 (ENSEEEG00000011212)	trappc13 (ENSEEEG00000011279)
Cyprinoidei	ANCESTRAL SPECIES	70	ENSGT00940000163543.b	ENSGT00940000157216.k.a	ENSGT00940000154687.B.q.a	ENSGT00940000154130.a.b.e	ENSGT00390000005101	ENSGT01030000234558.D.a	ENSGT00940000157589	ENSGT00530000063085.B	ENSGT00940000159387.f	ENSGT00390000009349.a	ENSGT00940000158646	ENSGT01100000263580	ENSGT00940000160109	ENSGT00940000161928	ENSGT00390000006843	ENSGT00390000013443.d ##22	ENSGT00940000155120	ENSGT00390000012898	ENSGT01050000244924.a.a.a	ENSGT00940000156729	ENSGT00440000039527	ENSGT00390000006366	ENSGT00940000155881	ENSGT00940000153510.b	ENSGT00940000157329.k	ENSGT00940000157329.l	ENSGT00510000047710	ENSGT00940000155967.d	ENSGT00940000156571	ENSGT00940000158733	ENSGT00940000158562
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	153	ENSGT00390000012898.l	ENSGT01050000244924.a.a.a.l	ENSGT00940000156729.d	ENSGT00440000039527	ENSGT00390000006366.e	ENSGT00940000155881.k	ENSGT01030000234558.D.a.a	ENSGT00940000157589.a	ENSGT00530000063085.B.f	ENSGT00940000159387.f.b	ENSGT00390000009349.b	ENSGT00940000158646.b	ENSGT01100000263580.mb.a.a	ENSGT00940000160109.b	ENSGT00390000006843.c	ENSGT00390000013443.d.a ##22	ENSGT00940000155120.c	ENSGT00390000012898.k.a.a	ENSGT01050000244924.a.a.a.k	ENSGT00940000156729.c	ENSGT00390000006366.f	ENSGT00940000155881.l	ENSGT00940000153510.b	ENSGT00940000157329.k.a	ENSGT00510000047710.b	ENSGT00940000155967.d.b	ENSGT00940000156571.u	ENSGT00940000158733.b	ENSGT00940000158562.f	ENSGT00940000157329.k.b	ENSGT00940000157329.l
Cyprininae_a	ANCESTRAL SPECIES	189	ENSGT00950000182969.A.a.b.b.a	ENSGT00940000157685.k	ENSGT00940000157216.k.a.a	ENSGT00940000154687.B.q.a.e	ENSGT00940000154130.a.b.e.j	ENSGT00390000005101.a	ENSGT01030000234558.D.a.a	ENSGT00940000157589.a	ENSGT00530000063085.B.f	ENSGT00940000159387.f.b	ENSGT00390000009349.a.b	ENSGT00940000158646.b	ENSGT01100000263580.mb.a.a	ENSGT00940000160109.b	ENSGT00390000006843.c	ENSGT00390000013443.d.a ##22	ENSGT00940000155120.c	ENSGT00390000012898.k.a.a	ENSGT01050000244924.a.a.a.k	ENSGT00940000156729.c	ENSGT00390000006366.f	ENSGT00940000155881.l	ENSGT00940000153510.b.i	ENSGT00940000157329.k.b	ENSGT00940000157329.l	ENSGT00510000047710.a	ENSGT00940000155967.d.a	ENSGT00940000156571.v	ENSGT00940000158733.a	ENSGT00940000158562.e.b	ENSGT00940000156639.d.b
Common carp reference	MODERN SPECIES	24	si:ch211-243g18.2 (ENSCCRG00000050750)	ENSCCRG00000078059	ENSCCRG00000050691	ENSCCRG00000002405	ENSCCRG00000015963	urm1 (ENSCCRG00000034842)	ENSCCRG00000015955	sardh (ENSCCRG00000011071)	dbh (ENSCCRG00000011055)	FAM163B (ENSCCRG00000060257)	ENSCCRG00000068012	slc27a4 (ENSCCRG00000068930)	ptgdsa (ENSCCRG00000040812)	ambp (ENSCCRG00000009879)	ENSCCRG00000009805	cdc37l1 (ENSCCRG00000009870) ##22	ak3 (ENSCCRG00000054369)	ugcg (ENSCCRG00000009772)	PTBP3 (ENSCCRG00000020908)	hsdl2 (ENSCCRG00000048323)	KIAA1958 (ENSCCRG00000048313)	inip (ENSCCRG00000072748)	lin54 (ENSCCRG00000048304)	cops4 (ENSCCRG00000048301)	plac8.2 (ENSCCRG00000076618)	plac8.1 (ENSCCRG00000058126)	srek1ip1 (ENSCCRG00000074055)	CWC27 (ENSCCRG00000021071)	ADAMTS6 (ENSCCRG00000049938)	ppwd1 (ENSCCRG00000020904)	trim23 (ENSCCRG00000019235)
Golden-line barbel	MODERN SPECIES	653														nrarpa (ENSSGRG00000012274)	ENSSGRG00000012275	cdc37l1 (ENSSGRG00000012276) ##22	ak3 (ENSSGRG00000012277)	ugcg (ENSSGRG00000012278)	PTBP3 (ENSSGRG00000012498)	hsdl2 (ENSSGRG00000012512)	inip (ENSSGRG00000012580)	lin54 (ENSSGRG00000012581)	cops4 (ENSSGRG00000012592)	plac8.1 (ENSSGRG00000012597)	srek1ip1 (ENSSGRG00000012598)	CWC27 (ENSSGRG00000012604)	ADAMTS6 (ENSSGRG00000012707)	ppwd1 (ENSSGRG00000012714)	trim23 (ENSSGRG00000012730)	ENSSGRG00000012732	tjp2a (ENSSGRG00000013121)
Goldfish	DUPLICATION
Goldfish	MODERN SPECIES	1	CERCAM (ENSCARG00000015427)	ENSCARG00000015389	ENSCARG00000015155	SH2D3C (ENSCARG00000015043)	ENSCARG00000015032	urm1 (ENSCARG00000014962)	CERCAM (ENSCARG00000014813)	sardh (ENSCARG00000014727)	dbh (ENSCARG00000014699)	FAM163B (ENSCARG00000014696)	ENSCARG00000014682	slc27a4 (ENSCARG00000014457)	ptgdsa (ENSCARG00000014449)	nrarpa (ENSCARG00000014443)	ENSCARG00000014429	cdc37l1 (ENSCARG00000014402) ##22	ak3 (ENSCARG00000014395)	ugcg (ENSCARG00000014371)	PTBP3 (ENSCARG00000012182)	hsdl2 (ENSCARG00000012045)	KIAA1958 (ENSCARG00000012039)	inip (ENSCARG00000012030)	lin54 (ENSCARG00000011982)	cops4 (ENSCARG00000011945)	plac8.1 (ENSCARG00000011935)	srek1ip1 (ENSCARG00000011925)	ENSCARG00000011919	CWC27 (ENSCARG00000011912)	ADAMTS6 (ENSCARG00000011545)	ppwd1 (ENSCARG00000011499)	trim23 (ENSCARG00000010986)
Goldfish	MODERN SPECIES	1	urm1 (ENSCARG00000014962)	ENSCARG00000015032	SH2D3C (ENSCARG00000015043)	ENSCARG00000015155	ENSCARG00000015389	CERCAM (ENSCARG00000015427)	ENSCARG00000015449	sardh (ENSCARG00000015478)	dbh (ENSCARG00000015987)	FAM163B (ENSCARG00000016003)	ENSCARG00000016007	slc27a4 (ENSCARG00000016076)	ptgdsa (ENSCARG00000018170)	ENSCARG00000018188	ENSCARG00000018537	cdc37l1 (ENSCARG00000018552) ##22	ak3 (ENSCARG00000018574)	ENSCARG00000018579	ugcg (ENSCARG00000018586)	PTBP3 (ENSCARG00000018649)	ENSCARG00000019401	hsdl2 (ENSCARG00000019405)	ENSCARG00000019420	inip (ENSCARG00000019431)	lin54 (ENSCARG00000019440)	cops4 (ENSCARG00000019550)	plac8.1 (ENSCARG00000019592)	srek1ip1 (ENSCARG00000019598)	CWC27 (ENSCARG00000019605)	ENSCARG00000019639	ndufa8 (ENSCARG00000019646)
Cyprininae	ANCESTRAL SPECIES	153	ENSGT00940000163543.b	ENSGT00940000157216.k.a.b	ENSGT00940000154687.B.q.a.f	ENSGT00940000154130.a.b.e.i	ENSGT00390000005101.b	ENSGT01030000234558.D.a.b	ENSGT00940000157589.b	ENSGT00530000063085.B.e	ENSGT00940000159387.f.a	ENSGT00390000009349.a.a	ENSGT00940000158646.a	ENSGT01100000263580.mb.a.b	ENSGT00940000160109.a	ENSGT00940000161928.h	ENSGT00390000006843.d	ENSGT00390000013443.d.b ##22	ENSGT00940000155120.d	ENSGT00390000012898.l	ENSGT01050000244924.a.a.a.l	ENSGT00940000156729.d	ENSGT00440000039527	ENSGT00390000006366.e	ENSGT00940000155881.k	ENSGT01030000234558.D.a.a	ENSGT00940000157589.a	ENSGT00530000063085.B.f	ENSGT00940000159387.f.b	ENSGT00390000009349.b	ENSGT00940000158646.b	ENSGT01100000263580.mb.a.a	ENSGT00940000160109.b
Goldfish	MODERN SPECIES	28	GPR21 (ENSCARG00000024842)	RABGAP1 (ENSCARG00000024440)	STRBP (ENSCARG00000024150)	SH2D3C (ENSCARG00000024087)	urm1 (ENSCARG00000024063)	CERCAM (ENSCARG00000023968)	ENSCARG00000023962	FAM163B (ENSCARG00000023959)	dbh (ENSCARG00000023937)	swi5 (ENSCARG00000023934)	slc27a4 (ENSCARG00000021856)	ptgdsa (ENSCARG00000021756)	ambp (ENSCARG00000021719)	nrarpa (ENSCARG00000021710)	ENSCARG00000021698	cdc37l1 (ENSCARG00000021680) ##22	ak3 (ENSCARG00000021669)	ugcg (ENSCARG00000021630)	ENSCARG00000021618	PTBP3 (ENSCARG00000019654)	hsdl2 (ENSCARG00000019515)	ENSCARG00000019491	inip (ENSCARG00000019478)	lin54 (ENSCARG00000019087)	cops4 (ENSCARG00000018998)	plac8.2 (ENSCARG00000018977)	plac8.1 (ENSCARG00000018974)	srek1ip1 (ENSCARG00000018968)	ADAMTS6 (ENSCARG00000018819)	trim23 (ENSCARG00000018485)	ENSCARG00000018447
Cyprininae_a	ANCESTRAL SPECIES	51	ENSGT00940000163543.b	ENSGT00940000157216.k.a.b	ENSGT00940000154687.B.q.a.f	ENSGT00940000154130.a.b.e.i	ENSGT00390000005101.b	ENSGT01030000234558.D.a.b	ENSGT00940000157589.b	ENSGT00530000063085.B.e	ENSGT00940000159387.f.a	ENSGT00390000009349.a.a	ENSGT00940000158646.a	ENSGT01100000263580.mb.a.b	ENSGT00940000160109.a	ENSGT00940000161928.h	ENSGT00390000006843.d	ENSGT00390000013443.d.b ##22	ENSGT00940000155120.d	ENSGT00390000012898.l	ENSGT01050000244924.a.a.a.l	ENSGT00940000156729.d	ENSGT00440000039527	ENSGT00390000006366.e	ENSGT00940000155881.k	ENSGT00940000153510.b.j	ENSGT00940000157329.k.a	ENSGT00510000047710.b	ENSGT00940000155967.d.b	ENSGT00940000156571.u	ENSGT00940000158733.b	ENSGT00940000158562.f
Common carp reference	MODERN SPECIES	32	ENSCCRG00000050744	ENSCCRG00000079785	ENSCCRG00000002230	ENSCCRG00000034854	urm1 (ENSCCRG00000015958)	ENSCCRG00000034798	sardh (ENSCCRG00000034793)	dbh (ENSCCRG00000052624)	FAM163B (ENSCCRG00000052622)	slc27a4 (ENSCCRG00000028723)	ptgdsa (ENSCCRG00000070426)	ambp (ENSCCRG00000040818)	nrarpa (ENSCCRG00000074114)	ENSCCRG00000074778	ENSCCRG00000055117	cdc37l1 (ENSCCRG00000009792) ##22	ak3 (ENSCCRG00000059992)	ugcg (ENSCCRG00000065322)	PTBP3 (ENSCCRG00000059525)	hsdl2 (ENSCCRG00000048329)	KIAA1958 (ENSCCRG00000067564)	ENSCCRG00000055901	lin54 (ENSCCRG00000040360)	cops4 (ENSCCRG00000053559)	plac8.2 (ENSCCRG00000080830)	ENSCCRG00000044158	srek1ip1 (ENSCCRG00000044149)	CWC27 (ENSCCRG00000066790)	ADAMTS6 (ENSCCRG00000020956)	ppwd1 (ENSCCRG00000020083)	trim23 (ENSCCRG00000069013)
Golden-line barbel	MODERN SPECIES	203	RABGAP1 (ENSSGRG00000011367)	GPR21 (ENSSGRG00000011571)	STRBP (ENSSGRG00000011572)	ENSSGRG00000011574	ENSSGRG00000011575	urm1 (ENSSGRG00000011576)	CERCAM (ENSSGRG00000011579)	sardh (ENSSGRG00000012104)	dbh (ENSSGRG00000012220)	FAM163B (ENSSGRG00000012223)	swi5 (ENSSGRG00000012225)	slc27a4 (ENSSGRG00000012227)	ambp (ENSSGRG00000012282)	nrarpa (ENSSGRG00000012283)	ENSSGRG00000012284	cdc37l1 (ENSSGRG00000012286) ##22	ENSSGRG00000012287
Zebrafish	MODERN SPECIES	1	ENSDARG00000063050	RABGAP1 (ENSDARG00000098967)	STRBP (ENSDARG00000021455)	SH2D3C (ENSDARG00000028099)	urm1 (ENSDARG00000091198)	CERCAM (ENSDARG00000079049)	sardh (ENSDARG00000058102)	dbh (ENSDARG00000069446)	FAM163B (ENSDARG00000073914)	swi5 (ENSDARG00000078492)	slc27a4 (ENSDARG00000017047)	ptgdsa (ENSDARG00000069439)	ambp (ENSDARG00000004296)	nrarpa (ENSDARG00000091419)	ENSDARG00000063140	cdc37l1 (ENSDARG00000044265) ##22	ak3 (ENSDARG00000058226)	ugcg (ENSDARG00000058221)	PTBP3 (ENSDARG00000043757)	hsdl2 (ENSDARG00000002523)	ENSDARG00000060911	inip (ENSDARG00000028523)	lin54 (ENSDARG00000063194)	cops4 (ENSDARG00000043732)	plac8.2 (ENSDARG00000094438)	plac8.1 (ENSDARG00000043729)	srek1ip1 (ENSDARG00000043728)	cwc27 (ENSDARG00000043727)	ADAMTS6 (ENSDARG00000041982)	ppwd1 (ENSDARG00000063161)	trim23 (ENSDARG00000069420)
Euteleosteomorpha	ANCESTRAL SPECIES	27	ENSGT00940000154687.B.q.a	ENSGT00940000154130.a.b.e	ENSGT00390000005101	ENSGT01030000234558.D.a	ENSGT00940000157589	ENSGT00940000166736	ENSGT00530000063085.B	ENSGT00940000159387.f	ENSGT00390000009349	ENSGT00940000158646	ENSGT01100000263580	ENSGT00940000160109	ENSGT00940000161928	ENSGT00950000186109	ENSGT00390000006843	ENSGT00390000013443.d ##22	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000155640.b	ENSGT00940000154396.a	ENSGT00390000000375	ENSGT00940000161373	ENSGT00390000002955	ENSGT00530000063839	ENSGT00390000009531	ENSGT00390000011483	ENSGT00390000008296.b.b	ENSGT00940000166601	ENSGT00940000157066.p	ENSGT00390000018845.e	ENSGT00940000156411
Protacanthopterygii	ANCESTRAL SPECIES	36	ENSGT00940000157216	ENSGT00940000163543.b	ENSGT00940000154687.B.q.a	ENSGT00940000154130.a.b.e	ENSGT00390000005101	ENSGT01030000234558.D.a	ENSGT00940000157589	ENSGT00530000063085.B	ENSGT00940000159387.f	ENSGT00390000009349	ENSGT00940000158646	ENSGT01100000263580	ENSGT00940000160109	ENSGT00940000161928	ENSGT00390000006843	ENSGT00390000013443.d ##22	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000155640.b	ENSGT00940000154396.a	ENSGT00390000000375	ENSGT00940000161373	ENSGT00390000002955	ENSGT00530000063839.s.a	ENSGT00390000009531	ENSGT00390000011483	ENSGT00390000008296.b.b	ENSGT00940000166601	ENSGT00940000157066.p	ENSGT00390000018845.e	ENSGT00940000156411
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	397																ENSGT00390000013443.d.c ##22	ENSGT00940000155120.a	ENSGT00530000063404.a	ENSGT00940000155640.b.e.a	ENSGT00940000154396.a.f	ENSGT00390000000375	ENSGT00940000161373.z	ENSGT00390000002955.c	ENSGT00530000063839.s.a	ENSGT00390000011483.a	ENSGT00390000008296.b.b.a	ENSGT00940000166601.g	ENSGT00940000157066.p.c	ENSGT00940000157066.o.a	ENSGT00390000018845.e.g	ENSGT00940000156411.od.a.a
Salmoninae_a	ANCESTRAL SPECIES	24	ENSGT00940000157685.i.a	ENSGT00940000163543.b.d	ENSGT00940000157216.j.a	ENSGT00940000154687.B.q.a.a	ENSGT00940000154130.a.b.e.e	ENSGT00390000005101	ENSGT01030000234558.D.a.e	ENSGT00940000157589	ENSGT00530000063085.B.d	ENSGT00940000159387.f.c	ENSGT00390000009349	ENSGT00940000158646.e	ENSGT01100000263580	ENSGT00940000160109.c	ENSGT00940000161928	ENSGT00390000013443.d.c ##22	ENSGT00940000155120.a	ENSGT00530000063404.a	ENSGT00940000155640.b.e.a	ENSGT00940000154396.a.f	ENSGT00390000000375.k.a	ENSGT00940000161373.z	ENSGT00390000002955.c	ENSGT00530000063839.s.a	ENSGT00390000011483.a	ENSGT00390000008296.b.b.a	ENSGT00940000166601.g	ENSGT00940000157066.p.c	ENSGT00390000018845.e.g	ENSGT00940000156411.od.a.a	ENSGT00390000012078.b.jb
Salmo	ANCESTRAL SPECIES	54	ENSGT00940000157685.i.a	ENSGT00940000163543.b.d	ENSGT00940000157216.j.a	ENSGT00940000154687.B.q.a.a	ENSGT00940000154130.a.b.e.e	ENSGT00390000005101	ENSGT01030000234558.D.a.e	ENSGT00940000157589	ENSGT00530000063085.B.d	ENSGT00940000159387.f.c	ENSGT00390000009349	ENSGT00940000158646.e	ENSGT01100000263580	ENSGT00940000160109.c	ENSGT00940000161928	ENSGT00390000013443.d.c ##22	ENSGT00940000155120.a	ENSGT00530000063404.a	ENSGT00940000155640.b.e.a	ENSGT00940000154396.a.f	ENSGT00390000000375.k.a	ENSGT00940000161373.z	ENSGT00390000002955.c	ENSGT00530000063839.s.a	ENSGT00390000011483.a	ENSGT00390000008296.b.b.a	ENSGT00940000166601.g	ENSGT00940000157066.p.c	ENSGT00390000018845.e.g	ENSGT00940000156411.od.a.a	ENSGT00390000012078.b.jb
River trout	MODERN SPECIES	15	GPR21 (ENSSTUG00000012517)	RABGAP1 (ENSSTUG00000011170)	STRBP (ENSSTUG00000010669)	SH2D3C (ENSSTUG00000009924)	urm1 (ENSSTUG00000009908)	CERCAM (ENSSTUG00000009844)	sardh (ENSSTUG00000007829)	ENSSTUG00000007743	dbh (ENSSTUG00000007726)	FAM163B (ENSSTUG00000007720)	ENSSTUG00000007705	slc27a4 (ENSSTUG00000005957)	ptgdsa (ENSSTUG00000005895)	ambp (ENSSTUG00000005783)	nrarpa (ENSSTUG00000005772)	cdc37l1 (ENSSTUG00000005759) ##22	ak3 (ENSSTUG00000005741)	rcl1 (ENSSTUG00000005648)	ENSSTUG00000005638	jak2a (ENSSTUG00000004997)	ENSSTUG00000004962	plgrkt (ENSSTUG00000004953)	ENSSTUG00000004939	RIC1 (ENSSTUG00000004838)	ERMP1 (ENSSTUG00000004580)	KIAA2026 (ENSSTUG00000004550)	ENSSTUG00000004222	oaz1b (ENSSTUG00000004143)	PRAG1 (ENSSTUG00000004115)	TMEM38B (ENSSTUG00000004089)	ZNF462 (ENSSTUG00000004041)
Atlantic salmon	MODERN SPECIES		ENSSSAG00000049926	GPR21 (ENSSSAG00000096388)	rabgap1 (ENSSSAG00000042610)	ENSSSAG00000041236	ENSSSAG00000040878	urm1 (ENSSSAG00000117928)	sardh (ENSSSAG00000012085)	dbh (ENSSSAG00000011014)	FAM163B (ENSSSAG00000095907)	swi5 (ENSSSAG00000010881)	slc27a4 (ENSSSAG00000010194)	ptgdsa (ENSSSAG00000010165)	AMBP (ENSSSAG00000010137)	nrarpa (ENSSSAG00000119476)	ENSSSAG00000098617	cdc37l1 (ENSSSAG00000010118) ##22	AK3 (ENSSSAG00000082095)	rcl1 (ENSSSAG00000010077)	jak2a (ENSSSAG00000005849)	ENSSSAG00000095399	plgrkt (ENSSSAG00000005674)	ENSSSAG00000005670	RIC1 (ENSSSAG00000004757)	ENSSSAG00000110808	ERMP1 (ENSSSAG00000004458)	ENSSSAG00000093129	KIAA2026 (ENSSSAG00000096015)	ENSSSAG00000003413	ENSSSAG00000003258	ENSSSAG00000003248	TMEM38B (ENSSSAG00000003237)
Oncorhynchus	ANCESTRAL SPECIES	21	ENSGT00940000157216.j.a	ENSGT00940000163543.b.d	ENSGT00940000154687.B.q.a.a	ENSGT00940000154130.a.b.e.e	ENSGT00390000005101	ENSGT01030000234558.D.a.e	ENSGT00940000157589	ENSGT00940000166736	ENSGT00530000063085.B.d	ENSGT00940000159387.f.c	ENSGT00390000009349	ENSGT00940000158646.e	ENSGT01100000263580	ENSGT00940000160109.c	ENSGT00940000161928	ENSGT00390000013443.d.c ##22	ENSGT00940000155120.a	ENSGT00530000063404.a	ENSGT00940000155640.b.e.a	ENSGT00940000154396.a.f	ENSGT00390000000375.k.a	ENSGT00940000161373.z	ENSGT00390000002955.c.a	ENSGT00530000063839.s.a	ENSGT00390000009531.f	ENSGT00390000011483.a	ENSGT00390000008296.b.b.a	ENSGT00940000166601.g	ENSGT00940000157066.p.c	ENSGT00390000018845.e.g	ENSGT00940000156411.od.a.a
Oncorhynchus_a	ANCESTRAL SPECIES	73	ENSGT00940000163543.b.d	ENSGT00940000157216.j.a	ENSGT00940000154687.B.q.a.a	ENSGT00940000154130.a.b.e.e	ENSGT00390000005101	ENSGT01030000234558.D.a.e	ENSGT00940000157589	ENSGT00940000166736	ENSGT00530000063085.B.d	ENSGT00940000159387.f.c	ENSGT00390000009349	ENSGT00940000158646.e	ENSGT01100000263580	ENSGT00940000160109.c	ENSGT00940000161928	ENSGT00390000013443.d.c ##22	ENSGT00940000155120.a	ENSGT00530000063404.a	ENSGT00940000155640.b.e.a	ENSGT00940000154396.a.f	ENSGT00390000000375.k.a	ENSGT00940000161373.z	ENSGT00390000002955.c.a	ENSGT00530000063839.s.a	ENSGT00390000011483.a	ENSGT00390000008296.b.b.a	ENSGT00940000166601.g	ENSGT00940000157066.p.c	ENSGT00390000018845.e.g	ENSGT00940000156411.od.a.a	ENSGT00390000012078.b.jb
Chinook salmon	MODERN SPECIES	12	ENSOTSG00005046293	GCNT4 (ENSOTSG00005046295)	FER (ENSOTSG00005046301)	pja2 (ENSOTSG00005046413)	man2a1 (ENSOTSG00005046423)	ENSOTSG00005046487	slc25a46 (ENSOTSG00005046488)	wdr36 (ENSOTSG00005046489)	camk4 (ENSOTSG00005046498)	kcmf1 (ENSOTSG00005046500)	ntrk2b (ENSOTSG00005046502)	hnrpkl (ENSOTSG00005046505)	ENSOTSG00005046516	gna14 (ENSOTSG00005046517)	ENSOTSG00005046518	cdc37l1 (ENSOTSG00005046610) ##22	ak3 (ENSOTSG00005046612)	rcl1 (ENSOTSG00005046614)	jak2a (ENSOTSG00005046619)	ENSOTSG00005046759	plgrkt (ENSOTSG00005046761)	ENSOTSG00005046762	RIC1 (ENSOTSG00005046764)	ENSOTSG00005046783	ENSOTSG00005047512	ENSOTSG00005047513	ENSOTSG00005047514	nxnl2 (ENSOTSG00005047515)	CSGALNACT1 (ENSOTSG00005047516)	PLPP1 (ENSOTSG00005047518)	mtrex (ENSOTSG00005047557)
Coho salmon	MODERN SPECIES	15	si:ch211-243g18.2 (ENSOKIG00005033092)	RABGAP1 (ENSOKIG00005033193)	GPR21 (ENSOKIG00005034016)	ENSOKIG00005034026	STRBP (ENSOKIG00005034043)	SH2D3C (ENSOKIG00005034181)	urm1 (ENSOKIG00005034274)	CERCAM (ENSOKIG00005034298)	sardh (ENSOKIG00005034459)	FAM163B (ENSOKIG00005037047)	swi5 (ENSOKIG00005037057)	slc27a4 (ENSOKIG00005037165)	ptgdsa (ENSOKIG00005039272)	ambp (ENSOKIG00005039290)	nrarpa (ENSOKIG00005039340)	cdc37l1 (ENSOKIG00005039354) ##22	ak3 (ENSOKIG00005039379)	jak2a (ENSOKIG00005039463)	rcl1 (ENSOKIG00005040117)	ENSOKIG00005040293	rln1 (ENSOKIG00005040300)	plgrkt (ENSOKIG00005040331)	ENSOKIG00005040367	RIC1 (ENSOKIG00005040592)	ERMP1 (ENSOKIG00005044136)	KIAA2026 (ENSOKIG00005044294)	ENSOKIG00005044331	oaz1b (ENSOKIG00005044455)	PRAG1 (ENSOKIG00005044465)	TMEM38B (ENSOKIG00005044482)	ZNF462 (ENSOKIG00005044500)
Rainbow trout	MODERN SPECIES	26	ENSOMYG00000027391	ENSOMYG00000029065	urm1 (ENSOMYG00000029135)	ENSOMYG00000029176	sardh (ENSOMYG00000029679)	ENSOMYG00000070800	ENSOMYG00000067702	ENSOMYG00000056815	ENSOMYG00000030856	ENSOMYG00000030858	slc27a4 (ENSOMYG00000030841)	ptgdsa (ENSOMYG00000030891)	ambp (ENSOMYG00000030902)	nrarpa (ENSOMYG00000030920)	ENSOMYG00000068007	cdc37l1 (ENSOMYG00000030941) ##22	ENSOMYG00000061853	ak3 (ENSOMYG00000030963)	rcl1 (ENSOMYG00000030970)	ENSOMYG00000062442	jak2a (ENSOMYG00000031302)	ENSOMYG00000056549	plgrkt (ENSOMYG00000032846)	ENSOMYG00000032862	RIC1 (ENSOMYG00000033226)	ERMP1 (ENSOMYG00000035370)	MLANA (ENSOMYG00000065790)	KIAA2026 (ENSOMYG00000035980)	ENSOMYG00000036094	oaz1b (ENSOMYG00000036517)	ENSOMYG00000067857
Huchen	MODERN SPECIES	608							sardh (ENSHHUG00000024399)	ENSHHUG00000024395	FAM163B (ENSHHUG00000024394)	swi5 (ENSHHUG00000024372)	slc27a4 (ENSHHUG00000024207)	ptgdsa (ENSHHUG00000024192)	ambp (ENSHHUG00000024188)	nrarpa (ENSHHUG00000024169)	ENSHHUG00000024162	cdc37l1 (ENSHHUG00000024145) ##22	ak3 (ENSHHUG00000024140)	rcl1 (ENSHHUG00000024022)	jak2a (ENSHHUG00000021513)	ENSHHUG00000021491	plgrkt (ENSHHUG00000021485)	ENSHHUG00000021460	RIC1 (ENSHHUG00000021433)
Salmoninae	ANCESTRAL SPECIES	346	ENSGT00940000157685.i.a	ENSGT00940000157216.j.a	ENSGT00940000154687.B.q.a.a	ENSGT00940000154130.a.b.e.e	ENSGT00390000005101	ENSGT01030000234558.D.a.e	ENSGT00940000157589	ENSGT00530000063085.B.d	ENSGT00940000159387.f.c	ENSGT00390000009349	ENSGT00940000158646.e	ENSGT01100000263580	ENSGT00940000160109.c	ENSGT00940000161928	ENSGT00390000006843	ENSGT00390000013443.d.d ##22	ENSGT00940000155120.b	ENSGT00990000211348	ENSGT00940000155640.b.e.b
Huchen	MODERN SPECIES	2428														nrarpa (ENSHHUG00000042223)	ENSHHUG00000042227	cdc37l1 (ENSHHUG00000042237) ##22	ak3 (ENSHHUG00000042291)	ENSHHUG00000042301	jak2a (ENSHHUG00000042427)
Salmoninae_a	ANCESTRAL SPECIES	57	ENSGT00390000008938.a	ENSGT00950000182969.A.a.b.f	ENSGT00940000157920.b	ENSGT00940000157685.i.b	ENSGT00940000163543.b.c	ENSGT00940000157216.j.b	ENSGT00940000154687.B.q.a.b	ENSGT00940000154130.a.b.e.f	ENSGT01030000234558.D.a.f	ENSGT00530000063085.B.c	ENSGT00940000159387.f.d	ENSGT00990000204868.b	ENSGT00940000158646.f	ENSGT00940000160109.d	ENSGT00390000006843	ENSGT00390000013443.d.d ##22	ENSGT00940000155120.b	ENSGT00990000211348	ENSGT00940000155640.b.e.b	ENSGT00940000154396.a.e	ENSGT00390000000375.k.b	ENSGT00940000161373.y	ENSGT00390000002955.d	ENSGT00530000063839.s.b	ENSGT00390000009531	ENSGT00390000011483.b	ENSGT00390000008296.b.b.b	ENSGT00940000166601.h	ENSGT00940000157066.p.d	ENSGT00390000018845.e.h	ENSGT00940000156411.od.a.b
Oncorhynchus	ANCESTRAL SPECIES	47	ENSGT00390000008938.a	ENSGT00950000182969.A.a.b.f	ENSGT00940000157920.b	ENSGT00940000157685.i.b	ENSGT00940000163543.b.c	ENSGT00940000157216.j.b	ENSGT00940000154687.B.q.a.b	ENSGT00940000154130.a.b.e.f	ENSGT01030000234558.D.a.f	ENSGT00530000063085.B.c	ENSGT00940000159387.f.d	ENSGT00990000204868.b	ENSGT00940000158646.f	ENSGT00940000160109.d	ENSGT00390000006843	ENSGT00390000013443.d.d ##22	ENSGT00940000155120.b	ENSGT00940000155640.b.e.b	ENSGT00940000154396.a.e	ENSGT01000000222080	ENSGT00940000161373.y	ENSGT00390000002955.d	ENSGT00530000063839.s.b	ENSGT00390000009531.e	ENSGT00390000011483.b	ENSGT00390000008296.b.b.b	ENSGT00940000166601.h	ENSGT00940000157066.p.d	ENSGT00390000018845.e.h	ENSGT00940000156411.od.a.b	ENSGT00390000012078.b.kb
Oncorhynchus_a	ANCESTRAL SPECIES	48	ENSGT00940000157920.b	ENSGT00940000157685.i.b	ENSGT00940000163543.b.c	ENSGT00940000157216.j.b	ENSGT00940000154687.B.q.a.b	ENSGT00940000154130.a.b.e.f	ENSGT00940000174776	ENSGT01040000241697.a	ENSGT01030000234558.D.a.f	ENSGT00530000063085.B.c	ENSGT00940000159387.f.d	ENSGT00990000204868.b	ENSGT00940000158646.f	ENSGT00940000160109.d	ENSGT00390000006843	ENSGT00390000013443.d.d ##22	ENSGT00940000155120.b	ENSGT00940000155640.b.e.b	ENSGT00940000154396.a.e	ENSGT00940000161373.y	ENSGT00390000002955.d	ENSGT00530000063839.s.b	ENSGT00390000009531.e	ENSGT00390000011483.b	ENSGT00390000008296.b.b.b	ENSGT00940000166601.h	ENSGT00940000157066.p.d	ENSGT00390000018845.e.h	ENSGT00940000156411.od.a.b	ENSGT00390000012078.b.kb	ENSGT00940000156229.db
Chinook salmon	MODERN SPECIES	33	lhx6a (ENSOTSG00005032911)	morn5 (ENSOTSG00005032907)	ENSOTSG00005032904	si:ch211-243g18.2 (ENSOTSG00005032886)	ENSOTSG00005032867	ENSOTSG00005032865	RABGAP1 (ENSOTSG00005032755)	CERCAM (ENSOTSG00005032749)	dbh (ENSOTSG00005032748)	FAM163B (ENSOTSG00005032747)	ENSOTSG00005032745	slc27a4 (ENSOTSG00005030646)	ENSOTSG00005030630	ambp (ENSOTSG00005030601)	ENSOTSG00005030592	cdc37l1 (ENSOTSG00005030589) ##22	ak3 (ENSOTSG00005030585)	jak2a (ENSOTSG00005027989)	ENSOTSG00005027963	ENSOTSG00005027962	PDCD1LG2 (ENSOTSG00005027960)	RIC1 (ENSOTSG00005027953)	ERMP1 (ENSOTSG00005027950)	ENSOTSG00005027946	KIAA2026 (ENSOTSG00005027944)	ENSOTSG00005025175	oaz1b (ENSOTSG00005025167)	ENSOTSG00005025166	TMEM38B (ENSOTSG00005025165)	ZNF462 (ENSOTSG00005025161)	rad23b (ENSOTSG00005025148)
Coho salmon	MODERN SPECIES	26	ENSOKIG00005043826	ENSOKIG00005043792	GPR21 (ENSOKIG00005043779)	RABGAP1 (ENSOKIG00005042193)	STRBP (ENSOKIG00005041432)	SH2D3C (ENSOKIG00005041361)	ENSOKIG00005041326	ENSOKIG00005041293	CERCAM (ENSOKIG00005041060)	dbh (ENSOKIG00005041036)	FAM163B (ENSOKIG00005041033)	slc27a4 (ENSOKIG00005040735)	ambp (ENSOKIG00005040634)	ENSOKIG00005040595	ENSOKIG00005040586	cdc37l1 (ENSOKIG00005040529) ##22	ENSOKIG00005040498	ak3 (ENSOKIG00005040486)	jak2a (ENSOKIG00005035557)	ENSOKIG00005035306	ENSOKIG00005035275	RIC1 (ENSOKIG00005035074)	ERMP1 (ENSOKIG00005034658)	ENSOKIG00005034620	KIAA2026 (ENSOKIG00005034610)	ENSOKIG00005034248	ENSOKIG00005034204	PRAG1 (ENSOKIG00005034196)	TMEM38B (ENSOKIG00005034186)	ENSOKIG00005034183	ZNF462 (ENSOKIG00005034164)
Rainbow trout	MODERN SPECIES	3	ENSOMYG00000018656	ENSOMYG00000062697	ENSOMYG00000064817	ENSOMYG00000060692	ENSOMYG00000018585	ENSOMYG00000066648	ENSOMYG00000018296	dbh (ENSOMYG00000018264)	ENSOMYG00000068284	ENSOMYG00000058972	ENSOMYG00000018247	ENSOMYG00000054612	slc27a4 (ENSOMYG00000018234)	ambp (ENSOMYG00000018191)	ENSOMYG00000018143	cdc37l1 (ENSOMYG00000018112) ##22	ak3 (ENSOMYG00000018108)	ENSOMYG00000050530	ENSOMYG00000057482	ENSOMYG00000013875	JAK2 (ENSOMYG00000014300)	PDCD1LG2 (ENSOMYG00000013859)	ENSOMYG00000048285	RIC1 (ENSOMYG00000013787)	ERMP1 (ENSOMYG00000017179)	ENSOMYG00000017171	MLANA (ENSOMYG00000063750)	KIAA2026 (ENSOMYG00000017162)	ENSOMYG00000017118	ENSOMYG00000017101	ENSOMYG00000017092
Salmo	ANCESTRAL SPECIES	13	ENSGT00950000182969.A.a.b.f	ENSGT00940000157920.b	ENSGT00940000157685.i.b	ENSGT00940000157216.j.b	ENSGT00940000163543.b.c	ENSGT00940000154687.B.q.a.b	ENSGT00940000154130.a.b.e.f	ENSGT01040000241697.a	ENSGT01030000234558.D.a.f	ENSGT00530000063085.B.c	ENSGT00940000159387.f.d	ENSGT00990000204868.b	ENSGT00940000158646.f	ENSGT00940000160109.d	ENSGT00390000006843	ENSGT00390000013443.d.d ##22	ENSGT00940000155120.b	ENSGT00990000211348	ENSGT00940000155640.b.e.b	ENSGT00940000154396.a.e	ENSGT00390000000375.k.b	ENSGT00940000161373.y	ENSGT00390000002955.d	ENSGT00530000063839.s.b	ENSGT00990000210603	ENSGT00390000011483.b	ENSGT00390000008296.b.b.b	ENSGT00940000166601.h	ENSGT00940000157066.p.d	ENSGT00390000018845.e.h	ENSGT00940000156411.od.a.b
Atlantic salmon	MODERN SPECIES	4	ENSSSAG00000097631	ENSSSAG00000030121	strbp (ENSSSAG00000031285)	ENSSSAG00000120884	ENSSSAG00000093773	ENSSSAG00000032306	ENSSSAG00000075290	ENSSSAG00000113260	ENSSSAG00000033888	dbh (ENSSSAG00000041010)	ENSSSAG00000093843	ENSSSAG00000093188	slc27a4 (ENSSSAG00000041801)	ambp (ENSSSAG00000042557)	ENSSSAG00000042657	cdc37l1 (ENSSSAG00000042669) ##22	ENSSSAG00000120245	jak2a (ENSSSAG00000042825)	ENSSSAG00000118979	ENSSSAG00000091202	plgrkt (ENSSSAG00000045051)	pdl1 (ENSSSAG00000045082)	RIC1 (ENSSSAG00000045143)	ERMP1 (ENSSSAG00000046733)	ENSSSAG00000118206	KIAA2026 (ENSSSAG00000047252)	ENSSSAG00000047303	ENSSSAG00000091091	ENSSSAG00000049723	TMEM38B (ENSSSAG00000049754)	ENSSSAG00000049762
River trout	MODERN SPECIES	6	GPR21 (ENSSTUG00000008797)	ENSSTUG00000008810	ENSSTUG00000008827	ENSSTUG00000008834	STRBP (ENSSTUG00000008853)	SH2D3C (ENSSTUG00000009073)	ENSSTUG00000009184	ENSSTUG00000009193	ENSSTUG00000009204	ENSSTUG00000009224	dbh (ENSSTUG00000009236)	FAM163B (ENSSTUG00000009284)	slc27a4 (ENSSTUG00000009316)	ambp (ENSSTUG00000011111)	ENSSTUG00000011136	cdc37l1 (ENSSTUG00000011175) ##22	ak3 (ENSSTUG00000011187)	ENSSTUG00000011191	jak2a (ENSSTUG00000011222)	rln1 (ENSSTUG00000011990)	ENSSTUG00000011996	PDCD1LG2 (ENSSTUG00000012037)	RIC1 (ENSSTUG00000012066)	ERMP1 (ENSSTUG00000012221)	ENSSTUG00000013634	KIAA2026 (ENSSTUG00000013642)	ENSSTUG00000013672	oaz1b (ENSSTUG00000013875)	ENSSTUG00000013890	TMEM38B (ENSSTUG00000013897)	ZNF462 (ENSSTUG00000013918)
Northern pike	MODERN SPECIES	13	SH2D3C (ENSELUG00000006660)	ENSELUG00000006578	ENSELUG00000027794	ENSELUG00000005511	urm1 (ENSELUG00000006757)	CERCAM (ENSELUG00000006806)	sardh (ENSELUG00000006912)	dbh (ENSELUG00000006960)	FAM163B (ENSELUG00000028986)	ENSELUG00000030044	slc27a4 (ENSELUG00000007023)	ptgdsa (ENSELUG00000034248)	ambp (ENSELUG00000007109)	nrarpa (ENSELUG00000007137)	ENSELUG00000007181	cdc37l1 (ENSELUG00000007209) ##22	ak3 (ENSELUG00000001121)	rcl1 (ENSELUG00000007353)	jak2a (ENSELUG00000007410)	rln1 (ENSELUG00000029279)	plgrkt (ENSELUG00000007449)	PDCD1LG2 (ENSELUG00000007468)	RIC1 (ENSELUG00000007545)	ERMP1 (ENSELUG00000007603)	MLANA (ENSELUG00000007634)	KIAA2026 (ENSELUG00000007646)	UHRF2 (ENSELUG00000007719)	oaz1b (ENSELUG00000007749)	PRAG1 (ENSELUG00000007761)	ENSELUG00000007781	TMEM38B (ENSELUG00000007799)
Acanthomorphata	ANCESTRAL SPECIES	33	ENSGT00940000154687.B.q.a	ENSGT00940000154130.a.b.e	ENSGT00390000005101	ENSGT01030000234558.D.a	ENSGT00940000157589	ENSGT00940000166736	ENSGT00530000063085.B	ENSGT00940000159387.f	ENSGT00390000009349	ENSGT00940000158646	ENSGT01100000263580	ENSGT00940000160109	ENSGT00940000161928	ENSGT00950000186109	ENSGT00390000006843	ENSGT00390000013443.d ##22	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000159174.e	ENSGT00940000165673	ENSGT00440000038604.i	ENSGT00940000165709	ENSGT00940000167205	ENSGT00940000161243	ENSGT00940000156763.b.a	ENSGT00390000000459.d	ENSGT00940000154890.b	ENSGT00990000213389	ENSGT00610000086153	ENSGT01030000234555.a.a.a.c.b.a	ENSGT00940000153491.b.a.k
Euacanthomorphacea	ANCESTRAL SPECIES	12	ENSGT00940000154687.B.q.a	ENSGT00940000154130.a.b.e	ENSGT00390000005101	ENSGT01030000234558.D.a	ENSGT00940000157589	ENSGT00940000166736	ENSGT00530000063085.B	ENSGT00940000159387.f	ENSGT00390000009349	ENSGT00940000158646	ENSGT01100000263580	ENSGT00940000160109	ENSGT00940000161928	ENSGT00950000186109	ENSGT00390000006843	ENSGT00390000013443.d ##22	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000159174.e	ENSGT00940000165673	ENSGT00440000038604.i	ENSGT00940000165709	ENSGT00940000167205	ENSGT00940000161243	ENSGT00940000156763.b.a	ENSGT00390000000459.d	ENSGT00940000154890.b	ENSGT00990000213389	ENSGT00610000086153	ENSGT01030000234555.a.a.a.c.b.a	ENSGT00940000153491.b.a.k
Percomorphaceae	ANCESTRAL SPECIES	16	ENSGT00940000154687.B.q.a	ENSGT00940000154130.a.b.e	ENSGT00390000005101	ENSGT01030000234558.D.a	ENSGT00940000157589	ENSGT00940000166736	ENSGT00530000063085.B	ENSGT00940000159387.f	ENSGT00390000009349	ENSGT00940000158646	ENSGT01100000263580	ENSGT00940000160109	ENSGT00940000161928	ENSGT00950000186109	ENSGT00390000006843	ENSGT00390000013443.d ##22	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000159174.e	ENSGT00940000165673	ENSGT00440000038604.i	ENSGT00940000165709	ENSGT00940000167205	ENSGT00940000161243	ENSGT00940000156763.b.a	ENSGT00390000000459.d	ENSGT00940000154890.b	ENSGT00990000213389	ENSGT00610000086153	ENSGT01030000234555.a.a.a.c.b.a	ENSGT00940000153491.b.a.k
Tiger tail seahorse	MODERN SPECIES	7														nrarpa (ENSHCOG00000020078)	ENSHCOG00000020087	cdc37l1 (ENSHCOG00000020106) ##22	ak3 (ENSHCOG00000020141)	rcl1 (ENSHCOG00000020170)	anxa3b (ENSHCOG00000020202)	ENSHCOG00000000539	ENSHCOG00000020370	ENSHCOG00000020382	ENSHCOG00000020391	ENSHCOG00000020408	klhl8 (ENSHCOG00000020413)	ENSHCOG00000020427	sdad1 (ENSHCOG00000020457)	ENSHCOG00000020519	ENSHCOG00000020581	ENSHCOG00000020614	ENSHCOG00000020668
Percomorphaceae_B	ANCESTRAL SPECIES	16	ENSGT00940000154130.a.b.e	ENSGT00390000005101	ENSGT01030000234558.D.a	ENSGT00940000157589	ENSGT00940000166736	ENSGT00530000063085.B	ENSGT00940000159387.f	ENSGT00390000009349	ENSGT00940000158646	ENSGT01100000263580	ENSGT00940000175176	ENSGT00940000160109	ENSGT00940000161928	ENSGT00950000186109	ENSGT00390000006843	ENSGT00390000013443.d ##22	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000159174.e	ENSGT00940000165673	ENSGT00440000038604.i	ENSGT00940000165709	ENSGT00940000167205	ENSGT00940000161243	ENSGT00940000156763.b.a	ENSGT00390000000459.d	ENSGT00940000154890.b	ENSGT00990000213389	ENSGT00610000086153	ENSGT01030000234555.a.a.a.c.b.a	ENSGT00940000153491.b.a.k
Ovalentaria	ANCESTRAL SPECIES	16	ENSGT00940000154687.B.q.a	ENSGT00940000154130.a.b.e	ENSGT00390000005101	ENSGT01030000234558.D.a	ENSGT00940000157589	ENSGT00940000166736	ENSGT00530000063085.B	ENSGT00940000159387.f	ENSGT00390000009349	ENSGT00940000158646	ENSGT01100000263580	ENSGT00940000175176	ENSGT00940000160109	ENSGT00940000161928	ENSGT00390000006843	ENSGT00390000013443.d ##22	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000159174.e	ENSGT00940000165673	ENSGT00440000038604.i	ENSGT00940000165709	ENSGT00940000167205	ENSGT00940000161243	ENSGT00940000156763.b.a	ENSGT00390000000459.d	ENSGT00940000154890.b	ENSGT00990000213389	ENSGT00610000086153	ENSGT01030000234555.a.a.a.c.b.a	ENSGT00940000153491.b.a.k
Atherinomorphae	ANCESTRAL SPECIES	17	ENSGT00940000163543.b	ENSGT00940000154687.B.q.a	ENSGT00940000154130.a.b.e	ENSGT00390000005101	ENSGT01030000234558.D.a	ENSGT00940000157589	ENSGT00530000063085.B	ENSGT00940000159387.f	ENSGT00390000009349	ENSGT00940000158646	ENSGT01100000263580	ENSGT00940000175176	ENSGT00940000160109	ENSGT00940000161928	ENSGT00390000006843	ENSGT00390000013443.d ##22	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000159174.e	ENSGT00940000165673	ENSGT00440000038604.i	ENSGT00940000165709	ENSGT00940000167205	ENSGT00940000161243	ENSGT00940000156763.b.a	ENSGT00390000000459.d	ENSGT00940000154890.b	ENSGT00990000213389	ENSGT00610000086153	ENSGT01030000234555.a.a.a.c.b.a	ENSGT00940000153491.b.a.k
Cyprinodontiformes	ANCESTRAL SPECIES	16	ENSGT00940000163543.b	ENSGT00940000154687.B.q.a	ENSGT00940000154130.a.b.e	ENSGT00390000005101	ENSGT01030000234558.D.a	ENSGT00940000157589	ENSGT00530000063085.B	ENSGT00940000159387.f	ENSGT00390000009349	ENSGT00940000158646	ENSGT01100000263580	ENSGT00940000175176	ENSGT00940000160109	ENSGT00940000161928	ENSGT00390000006843	ENSGT00390000013443.d ##22	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000159174.e	ENSGT00940000165673	ENSGT00440000038604.i	ENSGT00940000165709	ENSGT00940000167205	ENSGT00940000161243	ENSGT00940000156763.b.a	ENSGT00390000000459.d	ENSGT00940000154890.b	ENSGT00610000086153	ENSGT01030000234555.a.a.a.c.b.a	ENSGT00940000153491.b.a.k	ENSGT00940000155668.i.a
Aplocheiloidei	ANCESTRAL SPECIES	5	ENSGT00940000163543.b	ENSGT00940000154687.B.q.a	ENSGT00940000154130.a.b.e	ENSGT00390000005101	ENSGT01030000234558.D.a	ENSGT00940000157589	ENSGT00530000063085.B	ENSGT00940000159387.f	ENSGT00390000009349	ENSGT00940000158646	ENSGT01100000263580	ENSGT00940000175176	ENSGT00940000160109	ENSGT00940000161928	ENSGT00390000006843	ENSGT00390000013443.d ##22	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000159174.e	ENSGT00940000165673	ENSGT00440000038604.i	ENSGT00940000165709	ENSGT00940000167205	ENSGT00940000161243	ENSGT00940000156763.b.a	ENSGT00390000000459.d	ENSGT00940000154890.b	ENSGT00610000086153	ENSGT01030000234555.a.a.a.c.b.a	ENSGT00940000153491.b.a.k	ENSGT00950000183160.B
Turquoise killifish	MODERN SPECIES	1611	SH2D3C (ENSNFUG00015024753)	urm1 (ENSNFUG00015024736)	CERCAM (ENSNFUG00015024667)	ENSNFUG00015024659	sardh (ENSNFUG00015024484)	ENSNFUG00015024440	dbh (ENSNFUG00015024435)	ENSNFUG00015024427	FAM163B (ENSNFUG00015024425)	swi5 (ENSNFUG00015024420)	slc27a4 (ENSNFUG00015024045)	ptgdsa (ENSNFUG00015024015)	ambp (ENSNFUG00015024014)	NRARP (ENSNFUG00015024012)	EXD3 (ENSNFUG00015024008)	CDC37L1 (ENSNFUG00015024004) ##22	AK3 (ENSNFUG00015023994)	rcl1 (ENSNFUG00015023991)	ANXA3B (ENSNFUG00015023969)	ENSNFUG00015023926	NPDC1 (ENSNFUG00015023916)	pou5f3 (ENSNFUG00015023913)	fut7 (ENSNFUG00015023906)	fut7 (ENSNFUG00015023904)	fut7 (ENSNFUG00015023896)	ENSNFUG00015023895	clic3 (ENSNFUG00015023888)	ENSNFUG00015020076	ENSNFUG00015019824	NSMF (ENSNFUG00015018468)	CAMKK2 (ENSNFUG00015018398)
Mangrove rivulus	MODERN SPECIES	16	STRBP (ENSKMAG00000011192)	SH2D3C (ENSKMAG00000011360)	urm1 (ENSKMAG00000011433)	CERCAM (ENSKMAG00000011475)	sardh (ENSKMAG00000011529)	ENSKMAG00000011605	dbh (ENSKMAG00000011625)	FAM163B (ENSKMAG00000011648)	swi5 (ENSKMAG00000011669)	slc27a4 (ENSKMAG00000011698)	ptgdsa (ENSKMAG00000011744)	ENSKMAG00000011759	ambp (ENSKMAG00000011801)	nrarpa (ENSKMAG00000011866)	ENSKMAG00000011881	cdc37l1 (ENSKMAG00000011917) ##22	ak3 (ENSKMAG00000011929)	rcl1 (ENSKMAG00000011946)	anxa3b (ENSKMAG00000011995)	ENSKMAG00000012053	npdc1a (ENSKMAG00000012101)	pou5f3 (ENSKMAG00000012120)	fut7 (ENSKMAG00000012137)	clic3 (ENSKMAG00000012149)	ENSKMAG00000012190	NSMF (ENSKMAG00000012313)	ENSKMAG00000012458	snrpd3l (ENSKMAG00000012493)	ADORA2A (ENSKMAG00000012514)	BCR (ENSKMAG00000012542)	ENSKMAG00000012616
Cyprinodontoidei	ANCESTRAL SPECIES	16	ENSGT00940000163543.b	ENSGT00940000154687.B.q.a	ENSGT00940000154130.a.b.e	ENSGT00390000005101	ENSGT01030000234558.D.a	ENSGT00940000157589	ENSGT00530000063085.B	ENSGT00940000159387.f	ENSGT00390000009349	ENSGT00940000158646	ENSGT01100000263580	ENSGT00940000175176	ENSGT00940000160109	ENSGT00940000161928	ENSGT00390000006843	ENSGT00390000013443.d ##22	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000159174.e	ENSGT00940000165673	ENSGT00440000038604.i	ENSGT00940000165709	ENSGT00940000167205	ENSGT00940000161243	ENSGT00940000156763.b.a	ENSGT00390000000459.d	ENSGT00940000154890.b	ENSGT00610000086153	ENSGT01030000234555.a.a.a.c.b.a	ENSGT00940000153491.b.a.k	ENSGT00940000155668.i.a
Poeciliinae	ANCESTRAL SPECIES	12	ENSGT00940000157216	ENSGT00940000154687.B.q.a	ENSGT00940000154130.a.b.e	ENSGT00390000005101	ENSGT01030000234558.D.a	ENSGT00940000157589	ENSGT00530000063085.B	ENSGT00940000159387.f	ENSGT00390000009349	ENSGT00940000158646	ENSGT01100000263580	ENSGT00940000175176	ENSGT00940000160109	ENSGT00940000161928	ENSGT00390000006843	ENSGT00390000013443.d ##22	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000159174.e	ENSGT00940000165673	ENSGT00440000038604.i	ENSGT00940000165709	ENSGT00940000167205	ENSGT00940000161243	ENSGT00940000156763.b.a	ENSGT00390000000459.d	ENSGT00940000154890.b	ENSGT00610000086153	ENSGT01030000234555.a.a.a.c.b.a	ENSGT00940000153491.b.a.k	ENSGT00950000183160.B
Poecilia	ANCESTRAL SPECIES	12	ENSGT00940000157216	ENSGT00940000154687.B.q.a	ENSGT00940000154130.a.b.e	ENSGT00390000005101	ENSGT01030000234558.D.a	ENSGT00940000157589	ENSGT00530000063085.B	ENSGT00940000159387.f	ENSGT00390000009349	ENSGT00940000158646	ENSGT01100000263580	ENSGT00940000175176	ENSGT00940000160109	ENSGT00940000161928	ENSGT00390000006843	ENSGT00390000013443.d ##22	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000159174.e	ENSGT00940000165673	ENSGT00440000038604.i	ENSGT00940000165709	ENSGT00940000167205	ENSGT00940000161243	ENSGT00940000156763.b.a	ENSGT00390000000459.d	ENSGT00940000154890.b	ENSGT00610000086153	ENSGT01030000234555.a.a.a.c.b.a	ENSGT00940000153491.b.a.k	ENSGT00950000183160.B
NAME_6	ANCESTRAL SPECIES	12	ENSGT00940000157216.g	ENSGT00940000154687.B.q.a	ENSGT00940000154130.a.b.e	ENSGT00390000005101	ENSGT01030000234558.D.a	ENSGT00940000157589	ENSGT00530000063085.B	ENSGT00940000159387.f	ENSGT00390000009349	ENSGT00940000158646	ENSGT01100000263580	ENSGT00940000175176	ENSGT00940000160109	ENSGT00940000161928	ENSGT00390000006843	ENSGT00390000013443.d ##22	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000159174.e	ENSGT00940000165673	ENSGT00440000038604.i	ENSGT00940000165709	ENSGT00940000167205	ENSGT00940000161243	ENSGT00940000156763.b.a	ENSGT00390000000459.d	ENSGT00940000154890.b	ENSGT00610000086153	ENSGT01030000234555.a.a.a.c.b.a	ENSGT00940000153491.b.a.k	ENSGT00950000183160.B
Sailfin molly	MODERN SPECIES	16	ENSPLAG00000021624	STRBP (ENSPLAG00000021681)	SH2D3C (ENSPLAG00000021716)	urm1 (ENSPLAG00000021729)	CERCAM (ENSPLAG00000021775)	sardh (ENSPLAG00000021846)	dbh (ENSPLAG00000021880)	FAM163B (ENSPLAG00000021892)	swi5 (ENSPLAG00000021896)	slc27a4 (ENSPLAG00000021959)	ptgdsa (ENSPLAG00000021993)	ENSPLAG00000022001	ambp (ENSPLAG00000022254)	nrarpa (ENSPLAG00000022269)	ENSPLAG00000022290	cdc37l1 (ENSPLAG00000022298) ##22	ak3 (ENSPLAG00000022312)	rcl1 (ENSPLAG00000022354)	anxa3b (ENSPLAG00000022395)	ENSPLAG00000022500	npdc1a (ENSPLAG00000022511)	pou5f3 (ENSPLAG00000022529)	fut7 (ENSPLAG00000022547)	clic3 (ENSPLAG00000022555)	ENSPLAG00000022574	NSMF (ENSPLAG00000022846)	ENSPLAG00000023222	snrpd3l (ENSPLAG00000023249)	ADORA2A (ENSPLAG00000023267)
Amazon molly	MODERN SPECIES	258	RABGAP1 (ENSPFOG00000019697)	STRBP (ENSPFOG00000019696)	SH2D3C (ENSPFOG00000019695)	urm1 (ENSPFOG00000019694)	CERCAM (ENSPFOG00000019693)	sardh (ENSPFOG00000019692)	dbh (ENSPFOG00000019691)	FAM163B (ENSPFOG00000019690)	swi5 (ENSPFOG00000019689)	slc27a4 (ENSPFOG00000019688)	ptgdsa (ENSPFOG00000019687)	ENSPFOG00000023679	ambp (ENSPFOG00000019686)	nrarpa (ENSPFOG00000020581)	ENSPFOG00000019685	cdc37l1 (ENSPFOG00000019684) ##22	ak3 (ENSPFOG00000019683)	rcl1 (ENSPFOG00000019682)	anxa3b (ENSPFOG00000019681)	ENSPFOG00000019680	npdc1a (ENSPFOG00000024135)	pou5f3 (ENSPFOG00000019679)	fut7 (ENSPFOG00000019678)	clic3 (ENSPFOG00000019677)	ENSPFOG00000019676	NSMF (ENSPFOG00000019675)	ENSPFOG00000019674	snrpd3l (ENSPFOG00000019673)	ADORA2A (ENSPFOG00000019672)	ADORA2A (ENSPFOG00000019671)	BCR (ENSPFOG00000024771)
Guppy	MODERN SPECIES	442	STRBP (ENSPREG00000008696)	SH2D3C (ENSPREG00000008644)	urm1 (ENSPREG00000008611)	CERCAM (ENSPREG00000008544)	sardh (ENSPREG00000008464)	dbh (ENSPREG00000008394)	ENSPREG00000008361	FAM163B (ENSPREG00000008343)	swi5 (ENSPREG00000008320)	slc27a4 (ENSPREG00000008280)	ptgdsa (ENSPREG00000008250)	ENSPREG00000008241	ambp (ENSPREG00000008211)	nrarpa (ENSPREG00000008195)	ENSPREG00000008142	cdc37l1 (ENSPREG00000008071) ##22	ak3 (ENSPREG00000008050)	rcl1 (ENSPREG00000008032)	anxa3b (ENSPREG00000008000)	ENSPREG00000007935	pou5f3 (ENSPREG00000007900)	clic3 (ENSPREG00000007874)	ENSPREG00000007691	NSMF (ENSPREG00000007579)	ENSPREG00000007542	snrpd3l (ENSPREG00000007532)	ADORA2A (ENSPREG00000007519)	BCR (ENSPREG00000007458)	ENSPREG00000007332	pus1 (ENSPREG00000007231)	noc4l (ENSPREG00000007187)
Platyfish	MODERN SPECIES	22	GPR21 (ENSXMAG00000001722)	STRBP (ENSXMAG00000001700)	SH2D3C (ENSXMAG00000001681)	urm1 (ENSXMAG00000001680)	CERCAM (ENSXMAG00000001646)	sardh (ENSXMAG00000001573)	dbh (ENSXMAG00000001554)	FAM163B (ENSXMAG00000028414)	swi5 (ENSXMAG00000001550)	slc27a4 (ENSXMAG00000001495)	ptgdsa (ENSXMAG00000022725)	ENSXMAG00000026150	ambp (ENSXMAG00000001473)	nrarpa (ENSXMAG00000020266)	ENSXMAG00000001467	cdc37l1 (ENSXMAG00000001459) ##22	ak3 (ENSXMAG00000001440)	rcl1 (ENSXMAG00000022366)	anxa3b (ENSXMAG00000001313)	ENSXMAG00000001302	npdc1a (ENSXMAG00000001301)	pou5f3 (ENSXMAG00000001293)	fut7 (ENSXMAG00000027910)	fut7 (ENSXMAG00000027386)	clic3 (ENSXMAG00000001265)	ENSXMAG00000001213	NSMF (ENSXMAG00000001182)	ENSXMAG00000022869	ENSXMAG00000022185	snrpd3l (ENSXMAG00000001133)	ADORA2A (ENSXMAG00000030073)
NAME_4	ANCESTRAL SPECIES		ENSGT00940000157216	ENSGT00940000163543.b	ENSGT00940000154687.B.q.a	ENSGT00940000154130.a.b.e	ENSGT00390000005101	ENSGT01030000234558.D.a	ENSGT00940000157589	ENSGT00530000063085.B	ENSGT00940000159387.f	ENSGT00390000009349	ENSGT00940000158646	ENSGT01100000263580	ENSGT00940000160109	ENSGT00940000161928	ENSGT00390000006843	ENSGT00390000013443.d ##22	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000159174.e	ENSGT00940000165673	ENSGT00440000038604.i	ENSGT00940000165709	ENSGT00940000167205	ENSGT00940000161243	ENSGT00940000156763.b.a	ENSGT00390000000459.d	ENSGT00940000154890.b	ENSGT00610000086153	ENSGT01030000234555.a.a.a.c.b.a	ENSGT00940000153491.b.a.k	ENSGT00940000155668.i.a
Mummichog	MODERN SPECIES	2283	GPR21 (ENSFHEG00000012059)	STRBP (ENSFHEG00000012035)	SH2D3C (ENSFHEG00000011891)	ENSFHEG00000011865	ENSFHEG00000011823	sardh (ENSFHEG00000011729)	dbh (ENSFHEG00000011605)	FAM163B (ENSFHEG00000011498)	ENSFHEG00000011488	slc27a4 (ENSFHEG00000011478)	ptgdsa (ENSFHEG00000011405)	ENSFHEG00000000258	ambp (ENSFHEG00000011369)	nrarpa (ENSFHEG00000011360)	ENSFHEG00000011352	cdc37l1 (ENSFHEG00000011269) ##22	ak3 (ENSFHEG00000011245)	rcl1 (ENSFHEG00000011228)	ENSFHEG00000011201	ENSFHEG00000011085	npdc1a (ENSFHEG00000011014)	pou5f3 (ENSFHEG00000010994)	fut7 (ENSFHEG00000010936)	ENSFHEG00000010915	clic3 (ENSFHEG00000010833)	NSMF (ENSFHEG00000010815)	ENSFHEG00000010771	snrpd3l (ENSFHEG00000010754)	ADORA2A (ENSFHEG00000010747)	BCR (ENSFHEG00000010721)	ENSFHEG00000010649
Sheepshead minnow	MODERN SPECIES	339	GPR21 (ENSCVAG00000012010)	STRBP (ENSCVAG00000011985)	SH2D3C (ENSCVAG00000011887)	urm1 (ENSCVAG00000011864)	CERCAM (ENSCVAG00000011857)	sardh (ENSCVAG00000011808)	dbh (ENSCVAG00000011701)	FAM163B (ENSCVAG00000011664)	swi5 (ENSCVAG00000011656)	slc27a4 (ENSCVAG00000011645)	ptgdsa (ENSCVAG00000011584)	ENSCVAG00000011578	ambp (ENSCVAG00000011572)	nrarpa (ENSCVAG00000011563)	ENSCVAG00000011560	cdc37l1 (ENSCVAG00000011552) ##22	ak3 (ENSCVAG00000011544)	rcl1 (ENSCVAG00000011536)	anxa3b (ENSCVAG00000011493)	ENSCVAG00000011439	ENSCVAG00000011367	pou5f3 (ENSCVAG00000011359)
Oryzias	ANCESTRAL SPECIES	9	ENSGT00940000163543.b	ENSGT00940000154687.B.q.a	ENSGT00940000154130.a.b.e	ENSGT00390000005101	ENSGT01030000234558.D.a	ENSGT00940000157589	ENSGT00530000063085.B	ENSGT00940000159387.f	ENSGT00390000009349	ENSGT00940000158646	ENSGT01100000263580	ENSGT00940000175176	ENSGT00940000160109	ENSGT00940000161928	ENSGT00390000006843	ENSGT00390000013443.d ##22	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000159174.e	ENSGT00940000165673	ENSGT00440000038604.i	ENSGT00940000165709	ENSGT00940000167205	ENSGT00940000156763.b.a	ENSGT00390000000459.d	ENSGT00940000154890.b	ENSGT00990000213389	ENSGT00610000086153	ENSGT01030000234555.a.a.a.c.b.a	ENSGT00940000153491.b.a.k	ENSGT01030000236219
Oryzias_b	ANCESTRAL SPECIES	4	ENSGT00940000163543.b	ENSGT00940000154687.B.q.a	ENSGT00940000154130.a.b.e	ENSGT00390000005101	ENSGT01030000234558.D.a	ENSGT00940000157589	ENSGT00530000063085.B	ENSGT00940000159387.f	ENSGT00390000009349	ENSGT00940000158646	ENSGT01100000263580	ENSGT00940000175176	ENSGT00940000160109	ENSGT00940000161928	ENSGT00390000006843	ENSGT00390000013443.d ##22	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000159174.e	ENSGT00940000165673	ENSGT00440000038604.i	ENSGT00940000165709.c	ENSGT00940000167205	ENSGT00940000156763.b.a	ENSGT00390000000459.d	ENSGT00990000213389	ENSGT00940000154890.b	ENSGT00610000086153	ENSGT01030000234555.a.a.a.c.b.a	ENSGT00940000153491.b.a.k	ENSGT01030000236219
Indian medaka	MODERN SPECIES	30	RABGAP1 (ENSOMEG00000023491)	STRBP (ENSOMEG00000023400)	GPR21 (ENSOMEG00000023327)	SH2D3C (ENSOMEG00000023311)	urm1 (ENSOMEG00000023257)	CERCAM (ENSOMEG00000023247)	sardh (ENSOMEG00000023214)	dbh (ENSOMEG00000023184)	FAM163B (ENSOMEG00000023158)	swi5 (ENSOMEG00000023144)	slc27a4 (ENSOMEG00000023133)	ptgdsa (ENSOMEG00000023098)	ambp (ENSOMEG00000000624)	nrarpa (ENSOMEG00000023075)	ENSOMEG00000023060	cdc37l1 (ENSOMEG00000022999) ##22	ak3 (ENSOMEG00000022991)	rcl1 (ENSOMEG00000022976)	anxa3b (ENSOMEG00000022956)	ENSOMEG00000022925	npdc1a (ENSOMEG00000022884)	pou5f3 (ENSOMEG00000022875)	fut7 (ENSOMEG00000022867)	ENSOMEG00000022860	ENSOMEG00000022843	NSMF (ENSOMEG00000022807)	ENSOMEG00000022766	snrpd3l (ENSOMEG00000022734)	ENSOMEG00000022725	BCR (ENSOMEG00000022718)	ENSOMEG00000022704
Javanese ricefish	MODERN SPECIES	3	RABGAP1 (ENSOJAG00000022105)	STRBP (ENSOJAG00000022044)	SH2D3C (ENSOJAG00000021935)	urm1 (ENSOJAG00000021885)	CERCAM (ENSOJAG00000021765)	sardh (ENSOJAG00000021315)	dbh (ENSOJAG00000021194)	FAM163B (ENSOJAG00000021183)	swi5 (ENSOJAG00000021180)	slc27a4 (ENSOJAG00000020602)	ptgdsa (ENSOJAG00000020518)	ENSOJAG00000020512	ambp (ENSOJAG00000020501)	nrarpa (ENSOJAG00000020495)	ENSOJAG00000020484	cdc37l1 (ENSOJAG00000020480) ##22	AK3 (ENSOJAG00000020476)	rcl1 (ENSOJAG00000020392)	anxa3b (ENSOJAG00000020232)	ENSOJAG00000020128	npdc1a (ENSOJAG00000020115)	fut7 (ENSOJAG00000020096)	pou5f3 (ENSOJAG00000020081)	ENSOJAG00000020070	ENSOJAG00000019619	NSMF (ENSOJAG00000019513)	ENSOJAG00000019483	ENSOJAG00000019028	snrpd3l (ENSOJAG00000018961)	ADORA2A (ENSOJAG00000018951)	ENSOJAG00000018933
Oryzias_a	ANCESTRAL SPECIES	12	ENSGT00940000157216	ENSGT00940000163543.b	ENSGT00940000154687.B.q.a	ENSGT00940000154130.a.b.e	ENSGT00390000005101	ENSGT01030000234558.D.a	ENSGT00940000157589	ENSGT00530000063085.B	ENSGT00940000159387.f	ENSGT00390000009349	ENSGT00940000158646	ENSGT01100000263580	ENSGT00940000160109	ENSGT00940000161928	ENSGT00390000006843	ENSGT00390000013443.d ##22	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000159174.e	ENSGT00940000165673	ENSGT00440000038604.i	ENSGT00940000165709	ENSGT00940000167205	ENSGT00940000156763.b.a	ENSGT00390000000459.d	ENSGT00940000154890.b	ENSGT00990000213389	ENSGT00610000086153	ENSGT01030000234555.a.a.a.c.b.a	ENSGT00940000153491.b.a.k	ENSGT00940000155668.i.a
Japanese Medaka HdrR	MODERN SPECIES	3	ENSORLG00000029576	SH2D3C (ENSORLG00000010207)	urm1 (ENSORLG00000024432)	ENSORLG00000028712	CERCAM (ENSORLG00000024859)	sardh (ENSORLG00000010220)	dbh (ENSORLG00000010252)	FAM163B (ENSORLG00000029662)	swi5 (ENSORLG00000025400)	slc27a4 (ENSORLG00000010311)	ptgdsa (ENSORLG00000010319)	ambp (ENSORLG00000024990)	ENSORLG00000010354	nrarpa (ENSORLG00000010362)	ENSORLG00000010377	cdc37l1 (ENSORLG00000030321) ##22	ak3 (ENSORLG00000010417)	rcl1 (ENSORLG00000010443)	anxa3b (ENSORLG00000010454)	ENSORLG00000010462	npdc1a (ENSORLG00000028127)	pou5f3 (ENSORLG00000010471)	fut7 (ENSORLG00000010478)	ENSORLG00000010511	ENSORLG00000010537	NSMF (ENSORLG00000010557)	ENSORLG00000010570	snrpd3l (ENSORLG00000010586)	ENSORLG00000010598	BCR (ENSORLG00000010674)	ENSORLG00000010772
Ovalentaria_B	ANCESTRAL SPECIES	14	ENSGT00940000154687.B.q.a	ENSGT00940000154130.a.b.e	ENSGT00390000005101	ENSGT01030000234558.D.a	ENSGT00940000157589	ENSGT00940000166736	ENSGT00530000063085.B	ENSGT00940000159387.f	ENSGT00390000009349	ENSGT00940000158646	ENSGT01100000263580	ENSGT00940000175176	ENSGT00940000160109	ENSGT00940000161928	ENSGT00390000006843	ENSGT00390000013443.d ##22	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000159174.e	ENSGT00940000165673	ENSGT00440000038604.i	ENSGT00940000165709	ENSGT00940000167205	ENSGT00940000161243	ENSGT00940000156763.b.a	ENSGT00390000000459.d	ENSGT00940000154890.b	ENSGT00610000086153	ENSGT01030000234555.a.a.a.c.b.a	ENSGT01030000236219	ENSGT00940000153491.b.a.k
Pomacentridae	ANCESTRAL SPECIES	12	ENSGT00940000163543.b	ENSGT00940000157216	ENSGT00940000154687.B.q.a	ENSGT00940000154130.a.b.e	ENSGT00390000005101	ENSGT01030000234558.D.a	ENSGT00940000157589	ENSGT00530000063085.B	ENSGT00940000159387.f	ENSGT00390000009349	ENSGT00940000158646	ENSGT01100000263580	ENSGT00940000160109	ENSGT00940000161928	ENSGT00390000006843	ENSGT00390000013443.d ##22	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000159174.e	ENSGT00940000165673	ENSGT00440000038604.i	ENSGT00940000165709	ENSGT00940000167205	ENSGT00940000161243	ENSGT00940000156763.b.a	ENSGT00390000000459.d	ENSGT00940000154890.b	ENSGT00610000086153	ENSGT01030000234555.a.a.a.c.b.a	ENSGT01030000236219	ENSGT00940000153491.b.a.k
Pomacentridae_A	ANCESTRAL SPECIES	10	ENSGT00940000163543.b	ENSGT00940000157216	ENSGT00940000154687.B.q.a	ENSGT00940000154130.a.b.e	ENSGT00390000005101	ENSGT01030000234558.D.a	ENSGT00940000157589	ENSGT00530000063085.B	ENSGT00940000159387.f	ENSGT00390000009349	ENSGT00940000158646	ENSGT01100000263580	ENSGT00940000160109	ENSGT00940000161928	ENSGT00390000006843	ENSGT00390000013443.d ##22	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000159174.e	ENSGT00940000165673	ENSGT00440000038604.i	ENSGT00940000165709	ENSGT00940000167205	ENSGT00940000161243	ENSGT00940000156763.b.a	ENSGT00390000000459.d	ENSGT00940000154890.b	ENSGT00610000086153	ENSGT01030000234555.a.a.a.c.b.a	ENSGT00940000153491.b.a.k	ENSGT00940000159986
Amphiprion	ANCESTRAL SPECIES	5	ENSGT00940000163543.b	ENSGT00940000157216	ENSGT00940000154687.B.q.a	ENSGT00940000154130.a.b.e	ENSGT00390000005101	ENSGT01030000234558.D.a	ENSGT00940000157589	ENSGT00530000063085.B	ENSGT00940000159387.f	ENSGT00390000009349	ENSGT00940000158646	ENSGT01100000263580	ENSGT00940000160109	ENSGT00940000161928	ENSGT00390000006843	ENSGT00390000013443.d ##22	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000159174.e	ENSGT00940000165673	ENSGT00440000038604.i	ENSGT00940000165709	ENSGT00940000167205.j.a	ENSGT00940000167205.i	ENSGT00940000161243	ENSGT00940000156763.b.a	ENSGT00390000000459.d	ENSGT00940000154890.b	ENSGT00610000086153	ENSGT01030000234555.a.a.a.c.b.a	ENSGT00940000153491.b.a.k
Clown anemonefish	MODERN SPECIES	2604														nrarpa (ENSAOCG00000007688)	ENSAOCG00000007721	cdc37l1 (ENSAOCG00000007784) ##22	ak3 (ENSAOCG00000007834)	rcl1 (ENSAOCG00000002223)	anxa3b (ENSAOCG00000000449)
Orange clownfish	MODERN SPECIES	7	GPR21 (ENSAPEG00000007738)	RABGAP1 (ENSAPEG00000007575)	STRBP (ENSAPEG00000007513)	SH2D3C (ENSAPEG00000007467)	urm1 (ENSAPEG00000007448)	CERCAM (ENSAPEG00000007386)	sardh (ENSAPEG00000007311)	dbh (ENSAPEG00000007258)	FAM163B (ENSAPEG00000007248)	swi5 (ENSAPEG00000007215)	slc27a4 (ENSAPEG00000007145)	ptgdsa (ENSAPEG00000007125)	ambp (ENSAPEG00000007084)	nrarpa (ENSAPEG00000007070)	ENSAPEG00000007019	cdc37l1 (ENSAPEG00000006980) ##22	ak3 (ENSAPEG00000006953)	rcl1 (ENSAPEG00000006905)	anxa3b (ENSAPEG00000006863)	ENSAPEG00000006810	npdc1a (ENSAPEG00000006793)	pou5f3 (ENSAPEG00000006649)	fut7 (ENSAPEG00000006618)	fut7 (ENSAPEG00000006611)	fut7 (ENSAPEG00000006601)	fut7 (ENSAPEG00000006588)	clic3 (ENSAPEG00000006573)	ENSAPEG00000006540	NSMF (ENSAPEG00000006342)	ENSAPEG00000006297	snrpd3l (ENSAPEG00000006273)
Spiny chromis	MODERN SPECIES	310													fut7 (ENSAPOG00000015478)	ambp (ENSAPOG00000015489)	ENSAPOG00000015520	cdc37l1 (ENSAPOG00000015575) ##22	ak3 (ENSAPOG00000015618)	rcl1 (ENSAPOG00000015666)	anxa3b (ENSAPOG00000015730)	ENSAPOG00000015785	tmem141 (ENSAPOG00000015811)	zmynd19 (ENSAPOG00000015845)	bspry (ENSAPOG00000015899)	coq4 (ENSAPOG00000015932)	ENSAPOG00000015993	ENSAPOG00000016009	fbxw5 (ENSAPOG00000016024)	prdm12b (ENSAPOG00000016051)	fubp3 (ENSAPOG00000016135)	ASS1 (ENSAPOG00000016183)	surf4 (ENSAPOG00000016200)
Bicolor damselfish	MODERN SPECIES	1778													ambp (ENSSPAG00000017951)	nrarpa (ENSSPAG00000017963)	ENSSPAG00000017972	cdc37l1 (ENSSPAG00000017993) ##22	ak3 (ENSSPAG00000018009)	rcl1 (ENSSPAG00000018038)	anxa3b (ENSSPAG00000018101)	ENSSPAG00000018150	npdc1a (ENSSPAG00000018183)
Cichlidae	ANCESTRAL SPECIES	10	ENSGT00940000154687.B.q.a	ENSGT00940000154130.a.b.e	ENSGT00390000005101	ENSGT01030000234558.D.a	ENSGT00940000157589	ENSGT00940000166736	ENSGT00530000063085.B	ENSGT00940000159387.f	ENSGT00390000009349	ENSGT00940000158646	ENSGT01100000263580	ENSGT00940000175176	ENSGT00940000160109	ENSGT00940000161928	ENSGT00390000006843	ENSGT00390000013443.d ##22	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000159174.e	ENSGT00940000165673	ENSGT00440000038604.i	ENSGT00940000165709	ENSGT00940000167205	ENSGT00940000161243	ENSGT00940000156763.b.a	ENSGT00390000000459.d	ENSGT00940000154890.b	ENSGT00610000086153	ENSGT01030000234555.a.a.a.c.b.a	ENSGT00940000153491.b.a.k	ENSGT00940000159986
Pseudocrenilabrinae	ANCESTRAL SPECIES		ENSGT00940000154687.B.q.a	ENSGT00940000154130.a.b.e	ENSGT00390000005101	ENSGT01030000234558.D.a	ENSGT00940000157589	ENSGT00940000166736	ENSGT00530000063085.B	ENSGT00940000159387.f	ENSGT00390000009349	ENSGT00940000158646	ENSGT01100000263580	ENSGT00940000175176	ENSGT00940000160109	ENSGT00940000161928	ENSGT00390000006843	ENSGT00390000013443.d ##22	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000159174.e	ENSGT00940000165673	ENSGT00440000038604.i	ENSGT00940000165709	ENSGT00940000167205	ENSGT00940000161243	ENSGT00940000156763.b.a	ENSGT00390000000459.d	ENSGT00940000154890.b	ENSGT00610000086153	ENSGT01030000234555.a.a.a.c.b.a	ENSGT00940000153491.b.a.k	ENSGT00940000159986
Pseudocrenilabrinae_A	ANCESTRAL SPECIES		ENSGT00940000163543.b	ENSGT00940000154687.B.q.a	ENSGT00940000154130.a.b.e	ENSGT00390000005101	ENSGT01030000234558.D.a	ENSGT00940000157589	ENSGT00940000166736	ENSGT00530000063085.B	ENSGT00940000159387.f	ENSGT00390000009349	ENSGT00940000158646	ENSGT01100000263580	ENSGT00940000160109	ENSGT00940000161928	ENSGT00390000006843	ENSGT00390000013443.d ##22	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000159174.e	ENSGT00940000165673	ENSGT00440000038604.i	ENSGT00940000165709	ENSGT00940000167205	ENSGT00940000161243	ENSGT00940000156763.b.a.d	ENSGT00940000156763.b.a.c	ENSGT00390000000459.d	ENSGT00940000154890.b	ENSGT00610000086153	ENSGT01030000234555.a.a.a.c.b.a	ENSGT00940000153491.b.a.k
Haplochromini	ANCESTRAL SPECIES		ENSGT00940000157216	ENSGT00940000163543.b	ENSGT00940000154687.B.q.a	ENSGT00940000154130.a.b.e	ENSGT00390000005101	ENSGT01030000234558.D.a	ENSGT00940000157589	ENSGT00530000063085.B	ENSGT00940000159387.f	ENSGT00390000009349	ENSGT00940000158646	ENSGT01100000263580	ENSGT00940000160109	ENSGT00940000161928	ENSGT00390000006843	ENSGT00390000013443.d ##22	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000159174.e	ENSGT00940000165673	ENSGT00440000038604.i	ENSGT00940000165709	ENSGT00940000167205	ENSGT00940000161243	ENSGT00940000156763.b.a.d	ENSGT00940000156763.b.a.c	ENSGT00390000000459.d	ENSGT00940000154890.b	ENSGT00610000086153	ENSGT01030000234555.a.a.a.c.b.a	ENSGT00940000153491.b.a.k
Burton s mouthbrooder	MODERN SPECIES	525			SH2D3C (ENSHBUG00000001446)	urm1 (ENSHBUG00000001440)	CERCAM (ENSHBUG00000001435)	sardh (ENSHBUG00000001427)	dbh (ENSHBUG00000001423)	FAM163B (ENSHBUG00000001419)	swi5 (ENSHBUG00000001418)	slc27a4 (ENSHBUG00000001414)	ptgdsa (ENSHBUG00000001412)	ENSHBUG00000001411	ambp (ENSHBUG00000001409)	nrarpa (ENSHBUG00000001408)	ENSHBUG00000001405	cdc37l1 (ENSHBUG00000001398) ##22	ak3 (ENSHBUG00000001396)	rcl1 (ENSHBUG00000001393)	ENSHBUG00000001380	ENSHBUG00000001372	npdc1a (ENSHBUG00000001366)	pou5f3 (ENSHBUG00000001359)	clic3 (ENSHBUG00000001351)	pnpla7a (ENSHBUG00000001348)	NSMF (ENSHBUG00000001345)	ENSHBUG00000001339	snrpd3l (ENSHBUG00000001332)	ADORA2A (ENSHBUG00000001331)	BCR (ENSHBUG00000001325)	atp2a2b (ENSHBUG00000001320)	pus1 (ENSHBUG00000001316)
Haplochromini_A	ANCESTRAL SPECIES	12	ENSGT00940000157216	ENSGT00940000163543.b	ENSGT00940000154687.B.q.a	ENSGT00940000154130.a.b.e	ENSGT00390000005101	ENSGT01030000234558.D.a	ENSGT00940000157589	ENSGT00530000063085.B	ENSGT00940000159387.f	ENSGT00390000009349	ENSGT00940000158646	ENSGT01100000263580	ENSGT00940000160109	ENSGT00940000161928	ENSGT00390000006843	ENSGT00390000013443.d ##22	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000159174.e	ENSGT00940000165673	ENSGT00440000038604.i	ENSGT00940000165709	ENSGT00940000167205	ENSGT00940000161243	ENSGT00940000156763.b.a.d	ENSGT00940000156763.b.a.c	ENSGT00390000000459.d	ENSGT00940000154890.b	ENSGT00610000086153	ENSGT01030000234555.a.a.a.c.b.a	ENSGT00940000153491.b.a.k
P. nyererei	MODERN SPECIES	327	GPR21 (ENSPNYG00000012294)	STRBP (ENSPNYG00000012317)	SH2D3C (ENSPNYG00000012381)	ENSPNYG00000012429	urm1 (ENSPNYG00000012446)	CERCAM (ENSPNYG00000012488)	sardh (ENSPNYG00000012545)	dbh (ENSPNYG00000012630)	FAM163B (ENSPNYG00000012705)	slc27a4 (ENSPNYG00000012733)	ptgdsa (ENSPNYG00000012793)	ENSPNYG00000012799	ambp (ENSPNYG00000012815)	nrarpa (ENSPNYG00000012840)	ENSPNYG00000012849	cdc37l1 (ENSPNYG00000012873) ##22	ak3 (ENSPNYG00000012901)	rcl1 (ENSPNYG00000012910)	anxa3b (ENSPNYG00000012963)	ENSPNYG00000012987	npdc1a (ENSPNYG00000013053)	fut7 (ENSPNYG00000013086)	pou5f3 (ENSPNYG00000013110)	clic3 (ENSPNYG00000013187)	pnpla7a (ENSPNYG00000013203)	NSMF (ENSPNYG00000013240)	ENSPNYG00000013312	snrpd3l (ENSPNYG00000013344)	ADORA2A (ENSPNYG00000013352)	BCR (ENSPNYG00000013371)	atp2a2b (ENSPNYG00000013421)
Haplochromini_B	ANCESTRAL SPECIES	4	ENSGT00940000157216	ENSGT00940000163543.b	ENSGT00940000154687.B.q.a	ENSGT00940000154130.a.b.e	ENSGT00390000005101	ENSGT01030000234558.D.a	ENSGT00940000157589	ENSGT00530000063085.B	ENSGT00940000159387.f	ENSGT00390000009349	ENSGT00940000158646	ENSGT01100000263580	ENSGT00940000160109	ENSGT00940000161928	ENSGT00390000006843	ENSGT00390000013443.d ##22	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000159174.e	ENSGT00940000165673	ENSGT00440000038604.i	ENSGT00940000165709	ENSGT00940000167205	ENSGT00940000161243	ENSGT00940000156763.b.a.d	ENSGT00940000156763.b.a.c	ENSGT00390000000459.d	ENSGT00940000154890.b	ENSGT00610000086153	ENSGT01030000234555.a.a.a.c.b.a	ENSGT00940000153491.b.a.k
Eastern happy	MODERN SPECIES	19	RABGAP1 (ENSACLG00000022769)	STRBP (ENSACLG00000022623)	ENSACLG00000022603	SH2D3C (ENSACLG00000022506)	urm1 (ENSACLG00000022484)	CERCAM (ENSACLG00000022449)	sardh (ENSACLG00000022216)	dbh (ENSACLG00000022136)	FAM163B (ENSACLG00000022122)	ENSACLG00000022118	slc27a4 (ENSACLG00000022029)	ptgdsa (ENSACLG00000022012)	ambp (ENSACLG00000021991)	nrarpa (ENSACLG00000021979)	ENSACLG00000021922	cdc37l1 (ENSACLG00000021866) ##22	ak3 (ENSACLG00000021774)	rcl1 (ENSACLG00000021724)	anxa3b (ENSACLG00000021699)	ENSACLG00000021640	npdc1a (ENSACLG00000021599)	pou5f3 (ENSACLG00000021576)	fut7 (ENSACLG00000021567)	clic3 (ENSACLG00000021553)	ENSACLG00000021521	pnpla7a (ENSACLG00000021480)	NSMF (ENSACLG00000021404)	ENSACLG00000021307	snrpd3l (ENSACLG00000021295)	ADORA2A (ENSACLG00000021225)	BCR (ENSACLG00000021060)
Zebra mbuna	MODERN SPECIES	1110	GPR21 (ENSMZEG00005017141)	STRBP (ENSMZEG00005017152)	SH2D3C (ENSMZEG00005017175)	urm1 (ENSMZEG00005017191)	CERCAM (ENSMZEG00005017205)	sardh (ENSMZEG00005017212)	dbh (ENSMZEG00005017229)	FAM163B (ENSMZEG00005017238)	swi5 (ENSMZEG00005017240)	slc27a4 (ENSMZEG00005017248)	ptgdsa (ENSMZEG00005017257)	ENSMZEG00005017259	ambp (ENSMZEG00005017264)	nrarpa (ENSMZEG00005017267)	ENSMZEG00005017270	cdc37l1 (ENSMZEG00005017277) ##22	ak3 (ENSMZEG00005017287)	rcl1 (ENSMZEG00005017292)	anxa3b (ENSMZEG00005017307)	ENSMZEG00005017316	npdc1a (ENSMZEG00005017326)	pou5f3 (ENSMZEG00005017334)	fut7 (ENSMZEG00005017338)	clic3 (ENSMZEG00005017347)	ENSMZEG00005017563	NSMF (ENSMZEG00005017605)	ENSMZEG00005017636	snrpd3l (ENSMZEG00005017664)	ADORA2A (ENSMZEG00005017671)	BCR (ENSMZEG00005017683)	atp2a2b (ENSMZEG00005017710)
Lyretail cichlid	MODERN SPECIES	304	stt3a (ENSNBRG00000019076)	ei24 (ENSNBRG00000019109)	ENSNBRG00000019165	B3GAT1 (ENSNBRG00000019238)	sardh (ENSNBRG00000019268)	ENSNBRG00000019463	dbh (ENSNBRG00000019565)	FAM163B (ENSNBRG00000019594)	ENSNBRG00000019608	slc27a4 (ENSNBRG00000019627)	ptgdsa (ENSNBRG00000019656)	ENSNBRG00000019672	ambp (ENSNBRG00000019691)	nrarpa (ENSNBRG00000019716)	ENSNBRG00000019734	cdc37l1 (ENSNBRG00000019811) ##22	ak3 (ENSNBRG00000019835)	rcl1 (ENSNBRG00000019854)	anxa3b (ENSNBRG00000019892)	ENSNBRG00000019919	npdc1a (ENSNBRG00000019973)	pou5f3 (ENSNBRG00000020011)	fut7 (ENSNBRG00000020062)	clic3 (ENSNBRG00000020076)	pnpla7a (ENSNBRG00000020169)	ENSNBRG00000020196	NSMF (ENSNBRG00000020230)	ENSNBRG00000020274	snrpd3l (ENSNBRG00000020307)	ADORA2A (ENSNBRG00000020331)	BCR (ENSNBRG00000020388)
Nile tilapia	MODERN SPECIES	19	RABGAP1 (ENSONIG00000003929)	STRBP (ENSONIG00000003920)	SH2D3C (ENSONIG00000003912)	urm1 (ENSONIG00000003910)	CERCAM (ENSONIG00000003905)	sardh (ENSONIG00000003900)	dbh (ENSONIG00000003897)	FAM163B (ENSONIG00000003895)	swi5 (ENSONIG00000039901)	slc27a4 (ENSONIG00000003886)	ptgdsa (ENSONIG00000039127)	ENSONIG00000031160	ambp (ENSONIG00000003882)	nrarpa (ENSONIG00000020634)	ENSONIG00000003880	cdc37l1 (ENSONIG00000003878) ##22	ak3 (ENSONIG00000034113)	rcl1 (ENSONIG00000038172)	ENSONIG00000003866	ENSONIG00000003858	npdc1a (ENSONIG00000003857)	pou5f3 (ENSONIG00000003854)	fut7 (ENSONIG00000003853)	clic3 (ENSONIG00000003840)	ENSONIG00000036237	NSMF (ENSONIG00000003835)	ENSONIG00000003830	snrpd3l (ENSONIG00000003828)	ADORA2A (ENSONIG00000003826)	BCR (ENSONIG00000003817)	ENSONIG00000003806
Midas cichlid	MODERN SPECIES	1039	RABGAP1 (ENSACIG00000005233)	GPR21 (ENSACIG00000005282)	STRBP (ENSACIG00000005296)	SH2D3C (ENSACIG00000005325)	urm1 (ENSACIG00000005345)	CERCAM (ENSACIG00000005353)	sardh (ENSACIG00000005385)	dbh (ENSACIG00000005429)	FAM163B (ENSACIG00000005452)	swi5 (ENSACIG00000005462)	slc27a4 (ENSACIG00000005476)	ptgdsa (ENSACIG00000005512)	ambp (ENSACIG00000005528)	nrarpa (ENSACIG00000005552)	ENSACIG00000005561	cdc37l1 (ENSACIG00000005653) ##22	ak3 (ENSACIG00000005669)
Percomorphaceae_C	ANCESTRAL SPECIES	17	ENSGT00940000154687.B.q.a	ENSGT00940000154130.a.b.e	ENSGT00390000005101	ENSGT01030000234558.D.a	ENSGT00940000157589	ENSGT00530000063085.B	ENSGT00940000159387.f	ENSGT00390000009349	ENSGT00940000158646	ENSGT01100000263580	ENSGT00940000175176	ENSGT00940000160109	ENSGT00940000161928	ENSGT00950000186109	ENSGT00390000006843	ENSGT00390000013443.d ##22	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000159174.e	ENSGT00940000165673	ENSGT00440000038604.i	ENSGT00940000165709	ENSGT00940000167205	ENSGT00940000161243	ENSGT00940000156763.b.a	ENSGT00390000000459.d	ENSGT00940000154890.b	ENSGT00990000213389	ENSGT00610000086153	ENSGT01030000234555.a.a.a.c.b.a	ENSGT01030000236219
Eupercaria	ANCESTRAL SPECIES	13	ENSGT00940000154687.B.q.a	ENSGT00940000154130.a.b.e	ENSGT00390000005101	ENSGT01030000234558.D.a	ENSGT00940000157589	ENSGT00530000063085.B	ENSGT00940000159387.f	ENSGT00390000009349	ENSGT00940000158646	ENSGT01100000263580	ENSGT00940000175176	ENSGT00940000160109	ENSGT00940000161928	ENSGT00950000186109	ENSGT00390000006843	ENSGT00390000013443.d ##22	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000159174.e	ENSGT00940000165673	ENSGT00440000038604.i	ENSGT00940000165709	ENSGT00940000167205	ENSGT00940000161243	ENSGT00940000156763.b.a	ENSGT00390000000459.d	ENSGT00940000154890.b	ENSGT00990000213389	ENSGT00610000086153	ENSGT01030000234555.a.a.a.c.b.a	ENSGT00940000153491.b.a.k
Tetraodontidae	ANCESTRAL SPECIES	21	ENSGT00940000159066	ENSGT00940000168590	ENSGT00940000155983.a.b	ENSGT01100000263544.c.a.a.b	ENSGT00940000155291.b	ENSGT00940000156320.d	ENSGT00940000155816.a	ENSGT00940000154091.a.a.t	ENSGT00940000157724.a.b	ENSGT00390000006366.a	ENSGT00940000158994	ENSGT00950000183096.a.b	ENSGT00940000161837.c.a	ENSGT00940000161837.c.b	ENSGT00940000159174.e	ENSGT00390000013443.d ##22	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000165673	ENSGT00390000006843	ENSGT00950000186109	ENSGT00940000161928	ENSGT00390000009349	ENSGT00940000158646	ENSGT01100000263580	ENSGT00940000160109	ENSGT00940000159387.f	ENSGT00530000063085.B	ENSGT00940000157589	ENSGT01030000234558.D.a	ENSGT00390000005101
Fugu	MODERN SPECIES	18	ENSTRUG00000030476	cldn23.1 (ENSTRUG00000010901)	ENSTRUG00000010911	dusp4 (ENSTRUG00000011369)	ENSTRUG00000023865	ENSTRUG00000003018	slc26a1 (ENSTRUG00000022331)	paqr3b (ENSTRUG00000004286)	rasgef1bb (ENSTRUG00000005484)	snx18b (ENSTRUG00000023691)	inip (ENSTRUG00000023960)	snx30 (ENSTRUG00000006587)	SLC46A2 (ENSTRUG00000006727)	palm2akap2 (ENSTRUG00000006899)	ENSTRUG00000026503	cdc37l1 (ENSTRUG00000030669) ##22	anxa3b (ENSTRUG00000007232)	ak3 (ENSTRUG00000010606)	rcl1 (ENSTRUG00000010493)	ENSTRUG00000010302	ENSTRUG00000010236	nrarpa (ENSTRUG00000010225)	swi5 (ENSTRUG00000029660)	slc27a4 (ENSTRUG00000009716)	ptgdsa (ENSTRUG00000009705)	ENSTRUG00000027747	ENSTRUG00000009496	FAM163B (ENSTRUG00000009489)	dbh (ENSTRUG00000009103)	sardh (ENSTRUG00000008684)	CERCAM (ENSTRUG00000008540)
Eupecaria_A	ANCESTRAL SPECIES	14	ENSGT00940000163543.b	ENSGT00940000154687.B.q.a	ENSGT00940000154130.a.b.e	ENSGT00390000005101	ENSGT01030000234558.D.a	ENSGT00940000157589	ENSGT00530000063085.B	ENSGT00940000159387.f	ENSGT00390000009349	ENSGT00940000158646	ENSGT01100000263580	ENSGT00940000175176	ENSGT00940000160109	ENSGT00940000161928	ENSGT00390000006843	ENSGT00390000013443.d ##22	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000159174.e	ENSGT00940000165673	ENSGT00440000038604.i	ENSGT00940000165709	ENSGT00940000167205	ENSGT00940000161243	ENSGT00940000156763.b.a	ENSGT00390000000459.d	ENSGT00940000154890.b	ENSGT00990000213389	ENSGT00610000086153	ENSGT01030000234555.a.a.a.c.b.a	ENSGT00940000153491.b.a.k
Ballan wrasse	DUPLICATION
Ballan wrasse	MODERN SPECIES	109	STRBP (ENSLBEG00000004741)	SH2D3C (ENSLBEG00000004613)	urm1 (ENSLBEG00000004555)	CERCAM (ENSLBEG00000004528)	sardh (ENSLBEG00000004458)	dbh (ENSLBEG00000004397)	ENSLBEG00000004362	FAM163B (ENSLBEG00000004348)	swi5 (ENSLBEG00000004334)	slc27a4 (ENSLBEG00000004276)	ptgdsa (ENSLBEG00000004222)	ambp (ENSLBEG00000004147)	ENSLBEG00000004121	nrarpa (ENSLBEG00000004106)	ENSLBEG00000004079	cdc37l1 (ENSLBEG00000004052) ##22	ak3 (ENSLBEG00000004015)	rcl1 (ENSLBEG00000003957)	ENSLBEG00000003903	ENSLBEG00000003761	npdc1a (ENSLBEG00000003709)	pou5f3 (ENSLBEG00000003698)	fut7 (ENSLBEG00000003688)	ENSLBEG00000003640	ENSLBEG00000003545	NSMF (ENSLBEG00000003402)	ENSLBEG00000003242	snrpd3l (ENSLBEG00000003202)	ADORA2A (ENSLBEG00000003146)	BCR (ENSLBEG00000003018)	atp2a2b (ENSLBEG00000002870)
Ballan wrasse	MODERN SPECIES	2681																cdc37l1 (ENSLBEG00000008006) ##22
Eupecaria_B	ANCESTRAL SPECIES	14	ENSGT00940000163543.b	ENSGT00940000154687.B.q.a	ENSGT00940000154130.a.b.e	ENSGT00390000005101	ENSGT01030000234558.D.a	ENSGT00940000157589	ENSGT00530000063085.B	ENSGT00940000159387.f	ENSGT00390000009349	ENSGT00940000158646	ENSGT01100000263580	ENSGT00940000175176	ENSGT00940000160109	ENSGT00940000161928	ENSGT00390000006843	ENSGT00390000013443.d ##22	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000159174.e	ENSGT00940000165673	ENSGT00440000038604.i	ENSGT00940000165709	ENSGT00940000167205	ENSGT00940000161243	ENSGT00940000156763.b.a	ENSGT00390000000459.d	ENSGT00940000154890.b	ENSGT00990000213389	ENSGT00610000086153	ENSGT01030000234555.a.a.a.c.b.a	ENSGT00940000153491.b.a.k
Eupecaria_C	ANCESTRAL SPECIES	9	ENSGT00940000157216	ENSGT00940000154687.B.q.a	ENSGT00940000154130.a.b.e	ENSGT00390000005101	ENSGT01030000234558.D.a	ENSGT00940000157589	ENSGT00530000063085.B	ENSGT00940000159387.f	ENSGT00390000009349	ENSGT00940000158646	ENSGT01100000263580	ENSGT00940000175176	ENSGT00940000160109	ENSGT00940000161928	ENSGT00390000006843	ENSGT00390000013443.d ##22	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000159174.e	ENSGT00940000165673	ENSGT00440000038604.i	ENSGT00940000165709	ENSGT00940000167205	ENSGT00940000161243	ENSGT00940000156763.b.a	ENSGT00390000000459.d	ENSGT00940000154890.b	ENSGT00990000213389	ENSGT00610000086153	ENSGT01030000234555.a.a.a.c.b.a	ENSGT00940000153491.b.a.k
Gilthead seabream	MODERN SPECIES	3	RABGAP1 (ENSSAUG00010018892)	STRBP (ENSSAUG00010018478)	SH2D3C (ENSSAUG00010018460)	urm1 (ENSSAUG00010018459)	CERCAM (ENSSAUG00010018306)	sardh (ENSSAUG00010018267)	dbh (ENSSAUG00010018252)	FAM163B (ENSSAUG00010018249)	swi5 (ENSSAUG00010018246)	slc27a4 (ENSSAUG00010015229)	ptgdsa (ENSSAUG00010015164)	ENSSAUG00010015157	ambp (ENSSAUG00010015153)	nrarpa (ENSSAUG00010015151)	ENSSAUG00010015147	cdc37l1 (ENSSAUG00010015144) ##22	ak3 (ENSSAUG00010014982)	rcl1 (ENSSAUG00010014973)	anxa3b (ENSSAUG00010014971)	ENSSAUG00010014957	npdc1a (ENSSAUG00010014950)	pou5f3 (ENSSAUG00010014949)	fut7 (ENSSAUG00010014948)	clic3 (ENSSAUG00010014946)	PNPLA7 (ENSSAUG00010007985)	NSMF (ENSSAUG00010007917)	ENSSAUG00010007908	snrpd3l (ENSSAUG00010007904)	ADORA2A (ENSSAUG00010007902)	ENSSAUG00010007899	BCR (ENSSAUG00010007049)
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	6	ENSGT00940000157685	ENSGT00940000157216	ENSGT00940000154687.B.q.a	ENSGT00940000154130.a.b.e	ENSGT00390000005101	ENSGT01030000234558.D.a	ENSGT00940000157589	ENSGT00530000063085.B	ENSGT00940000159387.f	ENSGT00390000009349	ENSGT00940000158646	ENSGT01100000263580	ENSGT00940000160109	ENSGT00940000161928	ENSGT00390000006843	ENSGT00390000013443.d ##22	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000159174.e	ENSGT00940000165673	ENSGT00440000038604.i	ENSGT00940000165709	ENSGT00940000167205	ENSGT00940000161243	ENSGT00940000156763.b.a	ENSGT00390000000459.d	ENSGT00940000154890.b	ENSGT00990000213389	ENSGT00610000086153	ENSGT01030000234555.a.a.a.c.b.a	ENSGT00940000153491.b.a.k
European seabass	MODERN SPECIES	9	ENSDLAG00005023949	ENSDLAG00005023963	ENSDLAG00005024000	ENSDLAG00005024359	ENSDLAG00005024298	urm1 (ENSDLAG00005024484)	ENSDLAG00005024497	sardh (ENSDLAG00005024584)	dbh (ENSDLAG00005024648)	FAM163B (ENSDLAG00005024656)	ENSDLAG00005032513	slc27a4 (ENSDLAG00005024682)	ambp (ENSDLAG00005000501)	nrarpa (ENSDLAG00005000518)	ENSDLAG00005000528	cdc37l1 (ENSDLAG00005000540) ##22	ak3 (ENSDLAG00005034200)	RCL1 (ENSDLAG00005000559)	ENSDLAG00005000641	ENSDLAG00005000792	npdc1a (ENSDLAG00005000829)	pou5f3 (ENSDLAG00005029696)	fut7 (ENSDLAG00005000837)	clic3 (ENSDLAG00005000840)	ENSDLAG00005000913	ENSDLAG00005001949	ENSDLAG00005002256	ENSDLAG00005004007	snrpd3l (ENSDLAG00005032451)	ENSDLAG00005004023	ENSDLAG00005004082
Large yellow croaker	MODERN SPECIES	4	RABGAP1 (ENSLCRG00005011428)	STRBP (ENSLCRG00005011009)	ENSLCRG00005009778	urm1 (ENSLCRG00005009748)	CERCAM (ENSLCRG00005009424)	sardh (ENSLCRG00005009323)	dbh (ENSLCRG00005009322)	FAM163B (ENSLCRG00005009321)	swi5 (ENSLCRG00005009320)	slc27a4 (ENSLCRG00005007425)	ptgdsa (ENSLCRG00005007384)	ENSLCRG00005007383	ambp (ENSLCRG00005007380)	nrarpa (ENSLCRG00005007378)	ENSLCRG00005007375	cdc37l1 (ENSLCRG00005007372) ##22	ak3 (ENSLCRG00005007367)	rcl1 (ENSLCRG00005007353)	anxa3b (ENSLCRG00005007312)	ENSLCRG00005007301	npdc1a (ENSLCRG00005007297)	pou5f3 (ENSLCRG00005007284)	fut7 (ENSLCRG00005007283)	clic3 (ENSLCRG00005007281)	PNPLA7 (ENSLCRG00005006507)	NSMF (ENSLCRG00005006470)	ENSLCRG00005006469	ENSLCRG00005005405	snrpd3l (ENSLCRG00005005383)	ADORA2A (ENSLCRG00005005381)	BCR (ENSLCRG00005004556)
Perciformes	ANCESTRAL SPECIES	16	ENSGT00940000154687.B.q.a	ENSGT00940000154130.a.b.e	ENSGT00390000005101	ENSGT01030000234558.D.a	ENSGT00940000157589	ENSGT00530000063085.B	ENSGT00940000159387.f	ENSGT00390000009349	ENSGT00940000158646	ENSGT01100000263580	ENSGT00940000175176	ENSGT00940000160109	ENSGT00940000164331	ENSGT00390000006843	ENSGT00940000161928	ENSGT00390000013443.d ##22	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000159174.e	ENSGT00940000165673	ENSGT00440000038604.i	ENSGT00940000165709	ENSGT00940000167205	ENSGT00940000161243	ENSGT00940000156763.b.a	ENSGT00390000000459.d	ENSGT00940000154890.b	ENSGT00990000213389	ENSGT00610000086153	ENSGT01030000234555.a.a.a.c.b.a	ENSGT00940000153491.b.a.k
Cottioidei	ANCESTRAL SPECIES	18	ENSGT00940000154687.B.q.a	ENSGT00940000154130.a.b.e	ENSGT00390000005101	ENSGT01030000234558.D.a	ENSGT00940000157589	ENSGT00530000063085.B	ENSGT00940000159387.f	ENSGT00390000009349	ENSGT00940000158646	ENSGT01100000263580	ENSGT00940000175176	ENSGT00940000160109	ENSGT00390000006843	ENSGT00940000161928	ENSGT00940000161345	ENSGT00390000013443.d ##22	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000159174.e	ENSGT00940000165673	ENSGT00440000038604.i	ENSGT00940000165709	ENSGT00940000167205	ENSGT00940000161243	ENSGT00940000156763.b.a	ENSGT00390000000459.d	ENSGT00940000154890.b	ENSGT00990000213389	ENSGT00610000086153	ENSGT01030000234555.a.a.a.c.b.a	ENSGT00940000153491.b.a.k
Lumpfish	MODERN SPECIES	3	SH2D3C (ENSCLMG00005016195)	urm1 (ENSCLMG00005016219)	CERCAM (ENSCLMG00005016237)	sardh (ENSCLMG00005016931)	dbh (ENSCLMG00005017194)	FAM163B (ENSCLMG00005017196)	swi5 (ENSCLMG00005017198)	slc27a4 (ENSCLMG00005017212)	ptgdsa (ENSCLMG00005018616)	ENSCLMG00005018617	ambp (ENSCLMG00005018618)	ENSCLMG00005018630	ENSCLMG00005018632	nrarpa (ENSCLMG00005018634)	chchd10 (ENSCLMG00005018635)	cdc37l1 (ENSCLMG00005018636) ##22	ak3 (ENSCLMG00005018637)	rcl1 (ENSCLMG00005018639)	anxa3b (ENSCLMG00005018648)	ENSCLMG00005018990	npdc1a (ENSCLMG00005018997)	pou5f3 (ENSCLMG00005018998)	fut7 (ENSCLMG00005019000)	clic3 (ENSCLMG00005019001)	ENSCLMG00005019048	NSMF (ENSCLMG00005019914)	ENSCLMG00005019919	ENSCLMG00005020050	snrpd3l (ENSCLMG00005020052)	ADORA2A (ENSCLMG00005020059)	BCR (ENSCLMG00005020071)
Stickleback	MODERN SPECIES	13	GPR21 (ENSGACG00000017376)	STRBP (ENSGACG00000017377)	SH2D3C (ENSGACG00000017388)	urm1 (ENSGACG00000017389)	CERCAM (ENSGACG00000017392)	sardh (ENSGACG00000017396)	dbh (ENSGACG00000017404)	FAM163B (ENSGACG00000017407)	slc27a4 (ENSGACG00000017409)	ptgdsa (ENSGACG00000017420)	ambp (ENSGACG00000017422)	ENSGACG00000017442	nrarpa (ENSGACG00000017447)	chchd10 (ENSGACG00000017449)	ENSGACG00000017452	cdc37l1 (ENSGACG00000017455) ##22	ak3 (ENSGACG00000017460)	rcl1 (ENSGACG00000017474)	anxa3b (ENSGACG00000017484)	ENSGACG00000017495	npdc1a (ENSGACG00000017499)	pou5f3 (ENSGACG00000017503)	fut7 (ENSGACG00000017505)	ENSGACG00000017507	ENSGACG00000017517	NSMF (ENSGACG00000017525)	ENSGACG00000017528	snrpd3l (ENSGACG00000017533)	ADORA2A (ENSGACG00000017534)	BCR (ENSGACG00000017537)	ENSGACG00000017543
Perciformes_a	ANCESTRAL SPECIES	12	ENSGT00940000154687.B.q.a	ENSGT00940000154130.a.b.e	ENSGT00390000005101	ENSGT01030000234558.D.a	ENSGT00940000157589	ENSGT00530000063085.B	ENSGT00940000159387.f	ENSGT00390000009349	ENSGT00940000158646	ENSGT01100000263580	ENSGT00940000175176	ENSGT00940000160109	ENSGT00940000164331	ENSGT00390000006843	ENSGT00940000161928	ENSGT00390000013443.d ##22	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000159174.e	ENSGT00940000165673	ENSGT00440000038604.i	ENSGT00940000165709	ENSGT00940000167205	ENSGT00940000161243	ENSGT00940000156763.b.a	ENSGT00390000000459.d	ENSGT00940000154890.b	ENSGT00610000086153	ENSGT01030000234555.a.a.a.c.b.a	ENSGT00940000153491.b.a.k	ENSGT00940000155668.i.a
Channel bull blenny	MODERN SPECIES	3	RABGAP1 (ENSCGOG00000006824)	STRBP (ENSCGOG00000006130)	SH2D3C (ENSCGOG00000005790)	urm1 (ENSCGOG00000005779)	CERCAM (ENSCGOG00000005166)	sardh (ENSCGOG00000004189)	dbh (ENSCGOG00000004086)	FAM163B (ENSCGOG00000004068)	swi5 (ENSCGOG00000023984)	slc27a4 (ENSCGOG00000023716)	ptgdsa (ENSCGOG00000023696)	ENSCGOG00000023694	ambp (ENSCGOG00000023684)	ENSCGOG00000023681	nrarpa (ENSCGOG00000023680)	cdc37l1 (ENSCGOG00000023678) ##22	ak3 (ENSCGOG00000023675)	ENSCGOG00000023669	rcl1 (ENSCGOG00000023596)	anxa3b (ENSCGOG00000023492)	ENSCGOG00000023355	npdc1a (ENSCGOG00000023335)	pou5f3 (ENSCGOG00000023330)	fut7 (ENSCGOG00000023327)	clic3 (ENSCGOG00000023221)	ENSCGOG00000023219	PNPLA7 (ENSCGOG00000022708)	NSMF (ENSCGOG00000022677)	ENSCGOG00000022572	snrpd3l (ENSCGOG00000022560)	ADORA2A (ENSCGOG00000022558)
Pike perch	MODERN SPECIES	48	dbh (ENSSLUG00000001773)	FAM163B (ENSSLUG00000001786)	swi5 (ENSSLUG00000002876)	slc27a4 (ENSSLUG00000001998)	ptgdsa (ENSSLUG00000002886)	ENSSLUG00000002899	ambp (ENSSLUG00000002905)	ENSSLUG00000002967	ENSSLUG00000003105	ENSSLUG00000003118	ENSSLUG00000003129	ENSSLUG00000003138	ENSSLUG00000003150	ENSSLUG00000003176	nrarpa (ENSSLUG00000003242)	cdc37l1 (ENSSLUG00000003247) ##22	ak3 (ENSSLUG00000003259)	rcl1 (ENSSLUG00000003275)	anxa3b (ENSSLUG00000003342)	tubb2b (ENSSLUG00000003427)	ENSSLUG00000003547	npdc1a (ENSSLUG00000003616)	pou5f3 (ENSSLUG00000003627)	fut7 (ENSSLUG00000003640)	clic3 (ENSSLUG00000003649)	PNPLA7 (ENSSLUG00000004004)	NSMF (ENSSLUG00000008865)	ENSSLUG00000008889	ENSSLUG00000008902	snrpd3l (ENSSLUG00000009087)	ADORA2A (ENSSLUG00000009107)
Percomorphaceae_D	ANCESTRAL SPECIES	15	ENSGT00940000157216	ENSGT00940000163543.b	ENSGT00940000154687.B.q.a	ENSGT00940000154130.a.b.e	ENSGT00390000005101	ENSGT01030000234558.D.a	ENSGT00940000157589	ENSGT00530000063085.B	ENSGT00940000159387.f	ENSGT00390000009349	ENSGT00940000158646	ENSGT01100000263580	ENSGT00940000160109	ENSGT00940000161928	ENSGT00390000006843	ENSGT00390000013443.d ##22	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000159174.e	ENSGT00940000165673	ENSGT00440000038604.i	ENSGT00940000165709	ENSGT00940000167205	ENSGT00940000161243	ENSGT00940000156763.b.a	ENSGT00390000000459.d	ENSGT00990000213389	ENSGT00940000154890.b	ENSGT00610000086153	ENSGT01030000234555.a.a.a.c.b.a	ENSGT01030000236219
Carangaria	ANCESTRAL SPECIES	17	ENSGT00940000163543.b	ENSGT00940000157216	ENSGT00940000154687.B.q.a	ENSGT00940000154130.a.b.e	ENSGT00390000005101	ENSGT01030000234558.D.a	ENSGT00940000157589	ENSGT00530000063085.B	ENSGT00940000159387.f	ENSGT00390000009349	ENSGT00940000158646	ENSGT01100000263580	ENSGT00940000160109	ENSGT00940000161928	ENSGT00390000006843	ENSGT00390000013443.d ##22	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000159174.e	ENSGT00940000165673	ENSGT00440000038604.i	ENSGT00940000165709	ENSGT00940000167205	ENSGT00940000161243	ENSGT00940000156763.b.a	ENSGT00390000000459.d	ENSGT00940000154890.b	ENSGT00610000086153	ENSGT01030000234555.a.a.a.c.b.a	ENSGT01030000236219	ENSGT00940000153491.b.a.k
Carangaria_A	ANCESTRAL SPECIES	18	ENSGT00940000157216	ENSGT00940000163543.b	ENSGT00940000154687.B.q.a	ENSGT00940000154130.a.b.e	ENSGT00390000005101	ENSGT01030000234558.D.a	ENSGT00940000157589	ENSGT00530000063085.B	ENSGT00940000159387.f	ENSGT00390000009349	ENSGT00940000158646	ENSGT01100000263580	ENSGT00940000160109	ENSGT00940000161928	ENSGT00390000006843	ENSGT00390000013443.d ##22	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000159174.e	ENSGT00940000165673	ENSGT00440000038604.i	ENSGT00940000165709	ENSGT00940000167205	ENSGT00940000161243	ENSGT00940000156763.b.a	ENSGT00390000000459.d	ENSGT00940000154890.b	ENSGT00610000086153	ENSGT01030000234555.a.a.a.c.b.a	ENSGT00940000153491.b.a.k	ENSGT00940000159986
Seriola	ANCESTRAL SPECIES	19	ENSGT00940000157216	ENSGT00940000163543.b	ENSGT00940000154687.B.q.a	ENSGT00940000154130.a.b.e	ENSGT00390000005101	ENSGT01030000234558.D.a	ENSGT00940000157589	ENSGT00530000063085.B	ENSGT00940000159387.f	ENSGT00390000009349	ENSGT00940000158646	ENSGT01100000263580	ENSGT00940000160109	ENSGT00940000161928	ENSGT00390000006843	ENSGT00390000013443.d ##22	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000159174.e	ENSGT00940000165673	ENSGT00440000038604.i	ENSGT00940000165709	ENSGT00940000167205	ENSGT00940000161243	ENSGT00940000156763.b.a	ENSGT00390000000459.d	ENSGT00940000154890.b	ENSGT00610000086153	ENSGT01030000234555.a.a.a.c.b.a	ENSGT00940000153491.b.a.k	ENSGT00940000159986
Yellowtail amberjack	MODERN SPECIES	2613																cdc37l1 (ENSSLDG00000022036) ##22	ak3 (ENSSLDG00000022053)	rcl1 (ENSSLDG00000022076)	anxa3b (ENSSLDG00000022103)	ENSSLDG00000022125	npdc1a (ENSSLDG00000022163)	pou5f3 (ENSSLDG00000022187)	fut7 (ENSSLDG00000022299)	clic3 (ENSSLDG00000022308)	ENSSLDG00000022340	NSMF (ENSSLDG00000022467)	ENSSLDG00000022636	snrpd3l (ENSSLDG00000022664)	ADORA2A (ENSSLDG00000022677)	BCR (ENSSLDG00000022713)	atp2a2b (ENSSLDG00000022792)
Greater amberjack	MODERN SPECIES	258														nrarpa (ENSSDUG00000006247)	ENSSDUG00000006265	cdc37l1 (ENSSDUG00000006296) ##22	ak3 (ENSSDUG00000006332)	rcl1 (ENSSDUG00000006349)	anxa3b (ENSSDUG00000006392)	ENSSDUG00000006456	npdc1a (ENSSDUG00000006558)	pou5f3 (ENSSDUG00000006572)	pou5f3 (ENSSDUG00000006601)	fut7 (ENSSDUG00000006617)	clic3 (ENSSDUG00000006623)	ENSSDUG00000006638	ENSSDUG00000006726	NSMF (ENSSDUG00000006750)	ENSSDUG00000006835	snrpd3l (ENSSDUG00000006870)	ADORA2A (ENSSDUG00000006893)
Barramundi perch	MODERN SPECIES	121	ENSLCAG00010003434	RABGAP1 (ENSLCAG00010003497)	STRBP (ENSLCAG00010003638)	SH2D3C (ENSLCAG00010003745)	urm1 (ENSLCAG00010003790)	CERCAM (ENSLCAG00010003804)	sardh (ENSLCAG00010003849)	dbh (ENSLCAG00010003909)	FAM163B (ENSLCAG00010003913)	ENSLCAG00010003917	slc27a4 (ENSLCAG00010003999)	ptgdsa (ENSLCAG00010004377)	ENSLCAG00010004381	nrarpa (ENSLCAG00010004403)	ENSLCAG00010004414	cdc37l1 (ENSLCAG00010004420) ##22	ak3 (ENSLCAG00010004428)	rcl1 (ENSLCAG00010004451)	anxa3b (ENSLCAG00010004574)	ENSLCAG00010004618	npdc1a (ENSLCAG00010004621)	pou5f3 (ENSLCAG00010004623)	fut7 (ENSLCAG00010004625)	clic3 (ENSLCAG00010004629)	PNPLA7 (ENSLCAG00010004690)	NSMF (ENSLCAG00010005100)	ENSLCAG00010005119	snrpd3l (ENSLCAG00010005219)	ADORA2A (ENSLCAG00010005230)	BCR (ENSLCAG00010005409)	atp2a2b (ENSLCAG00010007278)
Pleuronectoidei	ANCESTRAL SPECIES	7	ENSGT00940000163543.b	ENSGT00940000157216	ENSGT00940000154687.B.q.a	ENSGT00940000154130.a.b.e	ENSGT00390000005101	ENSGT01030000234558.D.a	ENSGT00940000157589	ENSGT00530000063085.B	ENSGT00940000159387.f	ENSGT00390000009349	ENSGT00940000158646	ENSGT01100000263580	ENSGT00940000160109	ENSGT00940000161928	ENSGT00390000006843	ENSGT00390000013443.d ##22	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000159174.e	ENSGT00940000165673	ENSGT00440000038604.i	ENSGT00940000165709	ENSGT00940000167205	ENSGT00940000161243	ENSGT00940000156763.b.a	ENSGT00390000000459.d	ENSGT00940000154890.b	ENSGT00610000086153	ENSGT01030000234555.a.a.a.c.b.a	ENSGT01030000236219	ENSGT00940000153491.b.a.k
Tongue sole	MODERN SPECIES	5	FILIP1L (ENSCSEG00000000958)	ENSCSEG00000000946	ENSCSEG00000000939	ENSCSEG00000000903	ENSCSEG00000000887	pwp2h (ENSCSEG00000000861)	eed (ENSCSEG00000000854)	ATP7B (ENSCSEG00000000836)	ENSCSEG00000000833	ENSCSEG00000000822	ENSCSEG00000000811	pomk (ENSCSEG00000000808)	ambp (ENSCSEG00000000802)	nrarpa (ENSCSEG00000000797)	ENSCSEG00000000750	cdc37l1 (ENSCSEG00000000733) ##22	ak3 (ENSCSEG00000000726)	rcl1 (ENSCSEG00000000712)	anxa3b (ENSCSEG00000000702)	ENSCSEG00000000671	npdc1a (ENSCSEG00000019197)	pou5f3 (ENSCSEG00000019193)	fut7 (ENSCSEG00000019186)	clic3 (ENSCSEG00000019173)	ENSCSEG00000019139	st8sia3 (ENSCSEG00000019133)	WDR7 (ENSCSEG00000019110)	ARRDC1 (ENSCSEG00000019085)	glulc (ENSCSEG00000019071)	ENSCSEG00000019065	phpt1 (ENSCSEG00000019061)
Turbot	MODERN SPECIES	7	ENSSMAG00000019967	ENSSMAG00000019946	ENSSMAG00000019931	urm1 (ENSSMAG00000028849)	ENSSMAG00000019898	sardh (ENSSMAG00000019868)	dbh (ENSSMAG00000019862)	FAM163B (ENSSMAG00000029230)	ENSSMAG00000034312	slc27a4 (ENSSMAG00000019834)	ENSSMAG00000026708	ptgdsa (ENSSMAG00000019825)	ambp (ENSSMAG00000019819)	nrarpa (ENSSMAG00000026822)	ENSSMAG00000019809	cdc37l1 (ENSSMAG00000019799) ##22	ak3 (ENSSMAG00000019793)	RCL1 (ENSSMAG00000019751)	ENSSMAG00000019774	ENSSMAG00000019683	npdc1a (ENSSMAG00000030311)	pou5f3 (ENSSMAG00000019651)	fut7 (ENSSMAG00000028854)	clic3 (ENSSMAG00000019479)	ENSSMAG00000019446	ENSSMAG00000019404	ENSSMAG00000029256	ENSSMAG00000019319	snrpd3l (ENSSMAG00000019307)	ENSSMAG00000019298	ENSSMAG00000019292
Anabantaria	ANCESTRAL SPECIES	12	ENSGT00940000157216	ENSGT00940000163543.b	ENSGT00940000154687.B.q.a	ENSGT00940000154130.a.b.e	ENSGT00390000005101	ENSGT01030000234558.D.a	ENSGT00940000157589	ENSGT00530000063085.B	ENSGT00940000159387.f	ENSGT00390000009349	ENSGT00940000158646	ENSGT01100000263580	ENSGT00940000160109	ENSGT00940000161928	ENSGT00390000006843	ENSGT00390000013443.d ##22	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000159174.e	ENSGT00940000165673	ENSGT00440000038604.i	ENSGT00940000165709	ENSGT00940000167205	ENSGT00940000161243	ENSGT00940000156763.b.a	ENSGT00390000000459.d	ENSGT00990000213389	ENSGT00940000154890.b	ENSGT00610000086153	ENSGT01030000234555.a.a.a.c.b.a	ENSGT00940000153491.b.a.k
Zig-zag eel	MODERN SPECIES	3	GPR21 (ENSMAMG00000009103)	ENSMAMG00000009032	ENSMAMG00000008774	ENSMAMG00000008733	URM1 (ENSMAMG00000025662)	ENSMAMG00000008684	sardh (ENSMAMG00000008605)	dbh (ENSMAMG00000008553)	FAM163B (ENSMAMG00000008536)	swi5 (ENSMAMG00000024800)	slc27a4 (ENSMAMG00000008495)	ptgdsa (ENSMAMG00000025422)	ambp (ENSMAMG00000008436)	nrarpa (ENSMAMG00000026665)	ENSMAMG00000008407	cdc37l1 (ENSMAMG00000008383) ##22	ak3 (ENSMAMG00000008360)	RCL1 (ENSMAMG00000027190)	ENSMAMG00000008342	ENSMAMG00000008226	npdc1a (ENSMAMG00000008208)	pou5f3 (ENSMAMG00000008182)	fut7 (ENSMAMG00000008174)	clic3 (ENSMAMG00000008153)	ENSMAMG00000008127	ENSMAMG00000007938	ENSMAMG00000024732	ENSMAMG00000007818	snrpd3l (ENSMAMG00000027073)	ENSMAMG00000025202	ENSMAMG00000007621
Anabantoidei	ANCESTRAL SPECIES	16	ENSGT00940000157216	ENSGT00940000163543.b	ENSGT00940000154687.B.q.a	ENSGT00940000154130.a.b.e	ENSGT00390000005101	ENSGT01030000234558.D.a	ENSGT00940000157589	ENSGT00530000063085.B	ENSGT00940000159387.f	ENSGT00390000009349	ENSGT00940000158646	ENSGT01100000263580	ENSGT00940000160109	ENSGT00940000161928	ENSGT00390000006843	ENSGT00390000013443.d ##22	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000159174.e	ENSGT00940000165673	ENSGT00440000038604.i	ENSGT00940000165709	ENSGT00940000167205	ENSGT00940000161243	ENSGT00940000156763.b.a	ENSGT00390000000459.d	ENSGT00940000154890.b	ENSGT00610000086153	ENSGT01030000234555.a.a.a.c.b.a	ENSGT00940000153491.b.a.k	ENSGT00940000159895
Climbing perch	MODERN SPECIES	13	ENSATEG00000019543	STRBP (ENSATEG00000019558)	ENSATEG00000019597	urm1 (ENSATEG00000019659)	ENSATEG00000019680	sardh (ENSATEG00000019701)	dbh (ENSATEG00000019782)	FAM163B (ENSATEG00000028280)	swi5 (ENSATEG00000019828)	slc27a4 (ENSATEG00000019849)	ptgdsa (ENSATEG00000019895)	ENSATEG00000028723	ambp (ENSATEG00000019903)	nrarpa (ENSATEG00000019932)	ENSATEG00000019941	cdc37l1 (ENSATEG00000019968) ##22	AK3 (ENSATEG00000020012)	RCL1 (ENSATEG00000028320)	ENSATEG00000020060	ENSATEG00000020089	npdc1a (ENSATEG00000020151)	pou5f3 (ENSATEG00000020173)	fut7 (ENSATEG00000020191)	clic3 (ENSATEG00000020235)	ENSATEG00000020243	ENSATEG00000020287	ENSATEG00000020443	snrpd3l (ENSATEG00000020556)	ENSATEG00000020566	ENSATEG00000020616	ENSATEG00000020688
Siamese fighting fish	MODERN SPECIES	3	ENSBSLG00000012536	RABGAP1 (ENSBSLG00000011987)	STRBP (ENSBSLG00000011673)	SH2D3C (ENSBSLG00000010756)	urm1 (ENSBSLG00000010577)	CERCAM (ENSBSLG00000010346)	sardh (ENSBSLG00000010104)	FAM163B (ENSBSLG00000010066)	swi5 (ENSBSLG00000010058)	slc27a4 (ENSBSLG00000008500)	ptgdsa (ENSBSLG00000026036)	dbh (ENSBSLG00000026005)	ambp (ENSBSLG00000025954)	nrarpa (ENSBSLG00000025782)	ENSBSLG00000025776	cdc37l1 (ENSBSLG00000025771) ##22	ak3 (ENSBSLG00000025739)	rcl1 (ENSBSLG00000025705)	anxa3b (ENSBSLG00000025591)	ENSBSLG00000025450	npdc1a (ENSBSLG00000025150)	pou5f3 (ENSBSLG00000025149)	fut7 (ENSBSLG00000025147)	clic3 (ENSBSLG00000025144)	ENSBSLG00000024656	NSMF (ENSBSLG00000024448)	ENSBSLG00000024034	snrpd3l (ENSBSLG00000024010)	ADORA2A (ENSBSLG00000024006)	BCR (ENSBSLG00000022982)	ENSBSLG00000021551
Pinecone sodierfish	MODERN SPECIES	3	aplnrb (ENSMMDG00005007083)	ENSMMDG00005007080	ENSMMDG00005004668	ENSMMDG00005004518	slc35e4 (ENSMMDG00005004503)	ENSMMDG00005004499	INPP5J (ENSMMDG00005004466)	mat2aa (ENSMMDG00005004450)	ENSMMDG00005004440	mpx (ENSMMDG00005004421)	loxa (ENSMMDG00005004400)	snx24 (ENSMMDG00005023666)	GGCX (ENSMMDG00005023662)	gmcl1 (ENSMMDG00005023660)	fam136a (ENSMMDG00005023659)	cdc37l1 (ENSMMDG00005023657) ##22	ak3 (ENSMMDG00005023654)	rcl1 (ENSMMDG00005023650)	anxa3b (ENSMMDG00005023626)	ENSMMDG00005023610	npdc1a (ENSMMDG00005023601)	pou5f3 (ENSMMDG00005023598)	fut7 (ENSMMDG00005023597)	clic3 (ENSMMDG00005023595)	ENSMMDG00005023402	NSMF (ENSMMDG00005023375)	ptger4b (ENSMMDG00005023369)	ttc33 (ENSMMDG00005023366)	prkaa1 (ENSMMDG00005023345)	aif1l (ENSMMDG00005023336)	ENSMMDG00005023274
Cod	MODERN SPECIES	17	ENSGMOG00000037246	jak2a (ENSGMOG00000016634)	ENSGMOG00000016684	ENSGMOG00000016709	ENSGMOG00000016738	ENSGMOG00000004870	ENSGMOG00000006010	urm1 (ENSGMOG00000006245)	ENSGMOG00000006257	sardh (ENSGMOG00000006278)	dbh (ENSGMOG00000006317)	FAM163B (ENSGMOG00000035957)	swi5 (ENSGMOG00000023602)	slc27a4 (ENSGMOG00000001078)	ptgdsa (ENSGMOG00000006519)	CDC37L1 (ENSGMOG00000004644) ##22	ENSGMOG00000004666	RCL1 (ENSGMOG00000004677)	ENSGMOG00000004690	ENSGMOG00000004710	npdc1a (ENSGMOG00000036339)	pou5f3 (ENSGMOG00000004767)	fut7 (ENSGMOG00000004784)	clic3 (ENSGMOG00000004791)	ENSGMOG00000004813	ENSGMOG00000001288	ENSGMOG00000027599	snrpd3l (ENSGMOG00000008469)	ENSGMOG00000031274	ENSGMOG00000001343	ENSGMOG00000001310
Osteoglossiformes	ANCESTRAL SPECIES	306											ENSGT00390000009349	ENSGT00940000158646	ENSGT01100000263580	ENSGT00940000161928	ENSGT00390000006843	ENSGT00390000013443.d ##22	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000155640.b	ENSGT00940000154396.a	ENSGT00390000000375	ENSGT00940000161373.bb	ENSGT00390000002955.e	ENSGT00530000063839	ENSGT00390000009531	ENSGT00390000011483	ENSGT00390000008296.b.b.e	ENSGT00940000166601
P. kingsleyae	MODERN SPECIES	269	RABGAP1 (ENSPKIG00000021834)	STRBP (ENSPKIG00000021670)	SH2D3C (ENSPKIG00000021523)	urm1 (ENSPKIG00000021455)	CERCAM (ENSPKIG00000021433)	ENSPKIG00000021418	sardh (ENSPKIG00000021365)	dbh (ENSPKIG00000021325)	FAM163B (ENSPKIG00000021301)	ADAMTSL2 (ENSPKIG00000021270)	swi5 (ENSPKIG00000021253)	slc27a4 (ENSPKIG00000021232)	lcn15 (ENSPKIG00000021204)	nrarpa (ENSPKIG00000021164)	ENSPKIG00000021103	cdc37l1 (ENSPKIG00000021068) ##22	ak3 (ENSPKIG00000021048)	rcl1 (ENSPKIG00000021022)	jak2a (ENSPKIG00000020986)	rln1 (ENSPKIG00000020961)	plgrkt (ENSPKIG00000020935)	ENSPKIG00000020916	ENSPKIG00000020903	RIC1 (ENSPKIG00000020816)	ERMP1 (ENSPKIG00000020759)	MLANA (ENSPKIG00000020736)	KIAA2026 (ENSPKIG00000020722)	ENSPKIG00000020691	oaz1b (ENSPKIG00000020671)	PRAG1 (ENSPKIG00000020654)	ENSPKIG00000020648
Asian bonytongue	MODERN SPECIES	21	RABGAP1 (ENSSFOG00015000857)	ENSSFOG00015000779	SH2D3C (ENSSFOG00015000702)	urm1 (ENSSFOG00015000673)	CERCAM (ENSSFOG00015000611)	sardh (ENSSFOG00015000505)	dbh (ENSSFOG00015000449)	FAM163B (ENSSFOG00015000438)	ADAMTSL2 (ENSSFOG00015000229)	swi5 (ENSSFOG00015000214)	slc27a4 (ENSSFOG00015000115)	lcn15 (ENSSFOG00015024244)	ENSSFOG00015023097	nrarpa (ENSSFOG00015025355)	ENSSFOG00015023063	cdc37l1 (ENSSFOG00015032511) ##22	ak3 (ENSSFOG00015023033)	rcl1 (ENSSFOG00015023020)	jak2a (ENSSFOG00015022973)	ENSSFOG00015022964	plgrkt (ENSSFOG00015025421)	ENSSFOG00015022947	RIC1 (ENSSFOG00015022905)	ERMP1 (ENSSFOG00015022882)	MLANA (ENSSFOG00015022879)	KIAA2026 (ENSSFOG00015022871)	UHRF2 (ENSSFOG00015022837)	oaz1b (ENSSFOG00015031885)	PRAG1 (ENSSFOG00015022815)	TMEM38B (ENSSFOG00015022812)	ZNF462 (ENSSFOG00015022798)
Spotted gar	MODERN SPECIES	658	tars1 (ENSLOCG00000011402)	ENSLOCG00000011395	TMEM8B (ENSLOCG00000011389)	c9 (ENSLOCG00000011377)	dab2 (ENSLOCG00000011371)	ENSLOCG00000011364	mccc2 (ENSLOCG00000011352)	hspb11 (ENSLOCG00000011348)	smn1 (ENSLOCG00000011339)	ENSLOCG00000011330	slc20a2 (ENSLOCG00000011322)	kcmf1 (ENSLOCG00000011313)	lipg (ENSLOCG00000011301)	acaa2 (ENSLOCG00000011285)	GAK (ENSLOCG00000011267)	cdc37l1 (ENSLOCG00000011249) ##22	ak3 (ENSLOCG00000011239)	ptger4a (ENSLOCG00000011237)	prkaa1 (ENSLOCG00000011222)	rpl37 (ENSLOCG00000011220)	st8sia5 (ENSLOCG00000011209)	LOXHD1 (ENSLOCG00000011190)	RNF165 (ENSLOCG00000011182)	zgc:77838 (ENSLOCG00000011177)	haus1 (ENSLOCG00000011169)	atp5fa1 (ENSLOCG00000011157)	PSTPIP2 (ENSLOCG00000011149)	MAP1B (ENSLOCG00000011141)	mrps27 (ENSLOCG00000011134)	ptcd2 (ENSLOCG00000011122)	ZNF366 (ENSLOCG00000011104)
Reedfish	MODERN SPECIES	13	fxn (ENSECRG00000001774)	pip5k1bb (ENSECRG00000001748)	CCDC158 (ENSECRG00000001716)	ENSECRG00000001702	SCARB2 (ENSECRG00000001685)	ENSECRG00000001663	scarb2a (ENSECRG00000001620)	NUP54 (ENSECRG00000001549)	PPEF2 (ENSECRG00000001469)	ENSECRG00000001412	NAAA (ENSECRG00000001389)	sdad1 (ENSECRG00000001334)	EPHA5 (ENSECRG00000001178)	ENSECRG00000001123	ENSECRG00000001104	ENSECRG00000001075 ##22	ak3 (ENSECRG00000001017)	ENSECRG00000000957	ARHGAP24 (ENSECRG00000000840)	ENSECRG00000013283	mapk10 (ENSECRG00000013179)	ptpn13 (ENSECRG00000012948)	SLC10A6 (ENSECRG00000012874)	AFF1 (ENSECRG00000012843)	ENSECRG00000012824	ENSECRG00000012809	ENSECRG00000012743	klhl8 (ENSECRG00000012687)	ENSECRG00000012667	rassf6 (ENSECRG00000012649)	ENSECRG00000012635
Sarcopterygii	ANCESTRAL SPECIES	81			ENSGT00940000156489	ENSGT00940000160420	ENSGT00940000156282.a.a	ENSGT00940000154821.b	ENSGT00940000155460	ENSGT00940000157438	ENSGT00390000015757	ENSGT00940000164013	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00660000097148	ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00390000013443.d ##22	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000154396.a	ENSGT00390000000375	ENSGT00940000161373	ENSGT00390000002955	ENSGT00530000063839	ENSGT00390000009531	ENSGT00390000011483	ENSGT00390000008296.b.b	ENSGT00390000008296.b.a.a	ENSGT00390000017970	ENSGT00940000154930	ENSGT00940000153617.D	ENSGT00940000155804
Tetrapoda	ANCESTRAL SPECIES	2	ENSGT00940000155876	ENSGT00940000154886.a.a	ENSGT00940000156489	ENSGT00940000160420	ENSGT00940000156282.a.a	ENSGT00940000154821.b	ENSGT00940000155460	ENSGT00940000157438	ENSGT00390000015757	ENSGT00940000164013	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00660000097148	ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00390000013443.d ##22	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154396.a	ENSGT00390000000375	ENSGT00940000161373	ENSGT00390000002955	ENSGT00530000063839	ENSGT00390000009531	ENSGT00390000011483	ENSGT00390000008296.b.b	ENSGT00390000008296.b.a.a	ENSGT00390000017970	ENSGT00940000154930	ENSGT00940000153617.D
Amniota	ANCESTRAL SPECIES	4	ENSGT00940000155876	ENSGT00940000154886.a.a	ENSGT00940000156489	ENSGT00940000160420	ENSGT00940000156282.a.a	ENSGT00940000154821.b	ENSGT00940000155460	ENSGT00940000157438	ENSGT00390000015757	ENSGT00940000164013	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00950000186013	ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00390000013443.d ##22	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434	ENSGT00390000000375	ENSGT00940000161430	ENSGT00940000161373	ENSGT00390000002955	ENSGT00530000063839	ENSGT00390000009531	ENSGT00390000011483	ENSGT00390000008296.b.a.a	ENSGT00390000017970	ENSGT00940000154930	ENSGT00940000153617.D
Mammalia	ANCESTRAL SPECIES	24	ENSGT00940000154886.a.a	ENSGT00940000156489	ENSGT00940000160420	ENSGT00940000156282.a.a	ENSGT00940000154821.b	ENSGT00940000155460	ENSGT00940000157438	ENSGT00390000015757	ENSGT00940000164013	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00950000186013	ENSGT00940000155397.b	ENSGT00940000160907	ENSGT00530000063821.b.b	ENSGT00390000013443.d ##22	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434	ENSGT00390000000375	ENSGT00940000161430	ENSGT00940000161373	ENSGT00390000002955	ENSGT00530000063839	ENSGT00390000009531	ENSGT00390000011483	ENSGT00390000008296.b.a.a	ENSGT00390000017970	ENSGT00940000154930	ENSGT00940000153617.D
Theria	ANCESTRAL SPECIES	30	ENSGT00940000154886.a.a	ENSGT00940000156489	ENSGT00940000160420	ENSGT00940000156282.a.a	ENSGT00940000154821.b	ENSGT00940000155460	ENSGT00940000157438	ENSGT00390000015757	ENSGT00940000164013	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00950000186013	ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00940000160907	ENSGT00390000013443.d ##22	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434	ENSGT00390000000375	ENSGT00940000161430	ENSGT00940000161373	ENSGT00390000002955	ENSGT00530000063839	ENSGT00390000009531	ENSGT00390000011483	ENSGT00390000008296.b.a.a	ENSGT00390000017970	ENSGT00940000154930	ENSGT00390000003343
Eutheria	ANCESTRAL SPECIES	7	ENSGT00940000154886.a.a	ENSGT00940000156489	ENSGT00940000160420	ENSGT00940000156282.a.a	ENSGT00940000154821.b	ENSGT00940000155460	ENSGT00940000157438	ENSGT00390000015757	ENSGT00940000164013	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00900000143153	ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00940000160907	ENSGT00390000013443.d ##22	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434.b	ENSGT00940000154434.a	ENSGT00390000000375	ENSGT00940000161430	ENSGT00940000161373	ENSGT00390000002955	ENSGT00530000063839	ENSGT00390000009531	ENSGT00390000011483	ENSGT00940000162767	ENSGT00390000005185	ENSGT00940000163110
Atlantogenata	ANCESTRAL SPECIES	68	ENSGT00940000155876	ENSGT00940000154886.a.a	ENSGT00940000156489	ENSGT00940000160420	ENSGT00940000156282.a.a	ENSGT00940000154821.b	ENSGT00940000155460	ENSGT00940000157438	ENSGT00390000015757	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00900000143153	ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00940000160907	ENSGT00390000013443.d ##22	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434.b	ENSGT00940000154434.a	ENSGT00390000000375	ENSGT00940000161430	ENSGT00940000161373	ENSGT00390000002955	ENSGT00530000063839	ENSGT00390000009531	ENSGT00390000011483	ENSGT00940000162767	ENSGT00390000005185	ENSGT00940000163110
Afrotheria	ANCESTRAL SPECIES	145	ENSGT00940000154886.a.a	ENSGT00940000156489	ENSGT00940000160420	ENSGT00940000156282.a.a	ENSGT00940000154821.b	ENSGT00940000155460	ENSGT00940000157438	ENSGT00390000015757	ENSGT01050000244879.a.a.b	ENSGT00940000156896.n	ENSGT00940000156896.m	ENSGT00900000143153	ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00940000160907	ENSGT00390000013443.d ##22	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434.b
Afrotheria_a	ANCESTRAL SPECIES	145	ENSGT00940000154886.a.a	ENSGT00940000156489	ENSGT00940000160420	ENSGT00940000156282.a.a	ENSGT00940000154821.b	ENSGT00940000155460	ENSGT00940000157438	ENSGT00390000015757	ENSGT01050000244879.a.a.b	ENSGT00940000156896.n	ENSGT00940000156896.m	ENSGT00900000143153	ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00940000160907	ENSGT00390000013443.d ##22	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434.b
Elephant	MODERN SPECIES	593	ENSLAFG00000031278	ENSLAFG00000010638	DMRT3 (ENSLAFG00000028125)	DMRT2 (ENSLAFG00000008510)	SMARCA2 (ENSLAFG00000014061)	VLDLR (ENSLAFG00000015211)	KCNV2 (ENSLAFG00000017292)	PUM3 (ENSLAFG00000017341)	RFX3 (ENSLAFG00000021602)	ENSLAFG00000031654	ENSLAFG00000029971	ENSLAFG00000026125	SLC1A1 (ENSLAFG00000001120)	PLPP6 (ENSLAFG00000001123)	SPATA6L (ENSLAFG00000001121)	CDC37L1 (ENSLAFG00000001125) ##22	AK3 (ENSLAFG00000001126)	RCL1 (ENSLAFG00000017495)	JAK2 (ENSLAFG00000007471)	INSL6 (ENSLAFG00000007479)	ABO (ENSLAFG00000010293)	SURF6 (ENSLAFG00000026419)	MED22 (ENSLAFG00000002513)	ENSLAFG00000006436	ENSLAFG00000016963	STKLD1 (ENSLAFG00000008238)	REXO4 (ENSLAFG00000011274)	ADAMTS13 (ENSLAFG00000011278)	CACFD1 (ENSLAFG00000005395)	SLC2A6 (ENSLAFG00000005401)	MYMK (ENSLAFG00000016453)
Tenrec	MODERN SPECIES	1009																CDC37L1 (ENSETEG00000006523) ##22
Xenarthra	ANCESTRAL SPECIES	76							ENSGT00940000154821.b	ENSGT00940000155460	ENSGT00940000157438	ENSGT00390000015757	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00940000160907	ENSGT00390000013443.d ##22	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434.b	ENSGT00940000154434.a	ENSGT00390000000375	ENSGT00940000161430	ENSGT00940000161373	ENSGT00390000002955	ENSGT00530000063839	ENSGT00390000011483	ENSGT00390000005185	ENSGT00940000163110	ENSGT00390000008296.b.a.a	ENSGT00390000017970
Armadillo	MODERN SPECIES	1454		ST8SIA4 (ENSDNOG00000046147)	ENSDNOG00000040306	SMARCA2 (ENSDNOG00000006402)	VLDLR (ENSDNOG00000001086)	KCNV2 (ENSDNOG00000041737)	PUM3 (ENSDNOG00000008157)	RFX3 (ENSDNOG00000018668)	ENSDNOG00000012636	ENSDNOG00000042655	ENSDNOG00000035748	ENSDNOG00000042157	SLC1A1 (ENSDNOG00000001798)	SPATA6L (ENSDNOG00000038916)	PLPP6 (ENSDNOG00000015974)	CDC37L1 (ENSDNOG00000015975) ##22	AK3 (ENSDNOG00000038787)	RCL1 (ENSDNOG00000019911)	JAK2 (ENSDNOG00000008173)	ENSDNOG00000001668	ENSDNOG00000036090	ENSDNOG00000042926	CD274 (ENSDNOG00000018655)	PDCD1LG2 (ENSDNOG00000031933)	ENSDNOG00000036232	ENSDNOG00000034768	RIC1 (ENSDNOG00000042438)	ERMP1 (ENSDNOG00000015251)	KIAA2026 (ENSDNOG00000048191)	ENSDNOG00000003491	ENSDNOG00000049546
Sloth	MODERN SPECIES	780														ENSCHOG00000002951	PLPP6 (ENSCHOG00000002960)	CDC37L1 (ENSCHOG00000002962) ##22
Boreoeutheria	ANCESTRAL SPECIES	10	ENSGT00940000160420	ENSGT00940000156282.a.a	ENSGT00940000154821.b	ENSGT00520000061590	ENSGT00940000155460	ENSGT00940000157438	ENSGT00390000015757	ENSGT00940000164013	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00950000186013	ENSGT00900000143153	ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00940000160907	ENSGT00390000013443.d ##22	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434.b	ENSGT00940000154434.a	ENSGT00390000000375	ENSGT00940000161430	ENSGT00940000161373	ENSGT00390000002955	ENSGT00530000063839	ENSGT00390000009531	ENSGT00390000011483	ENSGT00940000162767	ENSGT00390000005185	ENSGT00940000163110
Euarchontoglires	ANCESTRAL SPECIES	10	ENSGT00940000156489	ENSGT00940000160420	ENSGT00940000156282.a.a	ENSGT00940000154821.b	ENSGT00520000061590	ENSGT00940000155460	ENSGT00940000157438	ENSGT00390000015757	ENSGT00940000164013	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00900000143153	ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00940000160907	ENSGT00390000013443.d ##22	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434.b	ENSGT00940000154434.a.a	ENSGT00390000000375	ENSGT00940000161430	ENSGT00940000161373	ENSGT00390000002955	ENSGT00530000063839	ENSGT00390000009531	ENSGT00390000011483	ENSGT00940000162767	ENSGT00390000005185	ENSGT00940000163110
Primates	ANCESTRAL SPECIES	9	ENSGT00940000154886.a.a	ENSGT00940000156489	ENSGT00940000160420	ENSGT00940000156282.a.a	ENSGT00940000154821.b	ENSGT00520000061590	ENSGT00940000155460	ENSGT00940000157438	ENSGT00390000015757	ENSGT00940000164013	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00940000160907	ENSGT00390000013443.d ##22	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434.b	ENSGT00940000154434.a.a	ENSGT00390000000375	ENSGT00940000161430	ENSGT00940000161373	ENSGT00390000002955	ENSGT00530000063839	ENSGT00390000009531	ENSGT00390000011483	ENSGT00940000162767	ENSGT00390000005185	ENSGT00940000163110
Haplorrhini	ANCESTRAL SPECIES	9	ENSGT00940000155876	ENSGT00940000154886.a.a	ENSGT00940000156489	ENSGT00940000160420	ENSGT00940000156282.a.a	ENSGT00940000154821.b	ENSGT00520000061590	ENSGT00940000155460	ENSGT00940000157438	ENSGT00390000015757	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00940000160907	ENSGT00390000013443.d ##22	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434.b	ENSGT00940000154434.a.a	ENSGT00390000000375	ENSGT00940000161430	ENSGT00940000161373	ENSGT00390000002955	ENSGT00530000063839	ENSGT00390000009531	ENSGT00390000011483	ENSGT00940000162767	ENSGT00390000005185	ENSGT00940000163110
Simiiformes	ANCESTRAL SPECIES	11	ENSGT00940000154886.a.a	ENSGT00940000156489	ENSGT00940000160420	ENSGT00940000156282.a.a	ENSGT00940000154821.b	ENSGT00910000146995	ENSGT00520000061590	ENSGT00940000155460	ENSGT00940000157438	ENSGT00390000015757	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00940000160907	ENSGT00390000013443.d ##22	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434.b	ENSGT00940000154434.a.a	ENSGT00390000000375	ENSGT00940000161430	ENSGT00940000161373	ENSGT00390000002955	ENSGT00530000063839	ENSGT00390000009531	ENSGT00390000011483	ENSGT00940000162767	ENSGT00390000005185	ENSGT00940000163110
Catarrhini	ANCESTRAL SPECIES	13	ENSGT00940000160420	ENSGT00940000156282.a.a	ENSGT00940000154821.b	ENSGT00910000146995	ENSGT00520000061590	ENSGT00940000155460	ENSGT00940000157438	ENSGT00390000015757	ENSGT00390000004049.cb	ENSGT01050000244879.a.a.b	ENSGT00910000146957	ENSGT00940000156896	ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00940000160907	ENSGT00390000013443.d ##22	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000153498.B.a.a	ENSGT00940000154434.b	ENSGT00940000154434.a.b	ENSGT00940000154434.a.a.e	ENSGT00940000154434.a.a.f	ENSGT00390000000375	ENSGT00730000111317.d	ENSGT00940000161430	ENSGT00940000161373	ENSGT00390000002955	ENSGT00530000063839	ENSGT00390000009531
Hominoidea	ANCESTRAL SPECIES	23	ENSGT00940000160420	ENSGT00940000156282.a.a	ENSGT00940000154821.b	ENSGT00910000146995	ENSGT00520000061590	ENSGT00940000155460	ENSGT00940000157438	ENSGT00390000015757	ENSGT00390000004049.cb	ENSGT01050000244879.a.a.b	ENSGT00910000146957	ENSGT00940000156896	ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00940000160907	ENSGT00390000013443.d ##22	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000153498.B.a.a	ENSGT00940000154434.b	ENSGT00940000154434.a.b	ENSGT00940000154434.a.a.e	ENSGT00940000154434.a.a.f	ENSGT00390000000375	ENSGT00730000111317.d	ENSGT00940000161430	ENSGT00940000161373	ENSGT00390000002955	ENSGT00530000063839	ENSGT00390000009531
Hominidae	ANCESTRAL SPECIES	10	ENSGT00940000160420	ENSGT00940000156282.a.a	ENSGT00940000154821.b	ENSGT00910000146995	ENSGT00520000061590	ENSGT00940000155460	ENSGT00940000157438	ENSGT00390000015757	ENSGT00390000004049.cb	ENSGT01050000244879.a.a.b	ENSGT00910000146957	ENSGT00940000156896	ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00940000160907	ENSGT00390000013443.d ##22	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000153498.B.a.a	ENSGT00940000154434.b	ENSGT00940000154434.a.b	ENSGT00940000154434.a.a.e	ENSGT00940000154434.a.a.f	ENSGT00390000000375	ENSGT00730000111317.d	ENSGT00940000161430	ENSGT00940000161373	ENSGT00390000002955	ENSGT00530000063839	ENSGT00390000009531
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	10	ENSGT00940000160420	ENSGT00940000156282.a.a	ENSGT00940000154821.b	ENSGT00910000146995	ENSGT00520000061590	ENSGT00940000155460	ENSGT00940000157438	ENSGT00390000015757	ENSGT00390000004049.cb	ENSGT01050000244879.a.a.b	ENSGT00910000146957	ENSGT00940000156896	ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00940000160907	ENSGT00390000013443.d ##22	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000153498.B.a.a	ENSGT00940000154434.b	ENSGT00940000154434.a.b	ENSGT00940000154434.a.a.e	ENSGT00940000154434.a.a.f	ENSGT00390000000375	ENSGT00730000111317.d	ENSGT00940000161430	ENSGT00940000161373	ENSGT00390000002955	ENSGT00530000063839	ENSGT00390000009531
Homo/Pan group	ANCESTRAL SPECIES	27	ENSGT00940000160420	ENSGT00940000156282.a.a	ENSGT00940000154821.b	ENSGT00910000146995	ENSGT00520000061590	ENSGT00940000155460	ENSGT00940000157438	ENSGT00390000015757	ENSGT00390000004049.cb	ENSGT01050000244879.a.a.b	ENSGT00910000146957	ENSGT00940000156896	ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00940000160907	ENSGT00390000013443.d ##22	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000153498.B.a.a	ENSGT00940000154434.b	ENSGT00940000154434.a.b	ENSGT00940000154434.a.a.e	ENSGT00940000154434.a.a.f	ENSGT00390000000375	ENSGT00730000111317.d	ENSGT00940000161430	ENSGT00940000161373	ENSGT00390000002955	ENSGT00530000063839	ENSGT00390000009531
Pan	ANCESTRAL SPECIES	26	ENSGT00940000160420	ENSGT00940000156282.a.a	ENSGT00940000154821.b	ENSGT00910000146995	ENSGT00520000061590	ENSGT00940000155460	ENSGT00940000157438	ENSGT00390000015757	ENSGT00390000004049.cb	ENSGT01050000244879.a.a.b	ENSGT00910000146957	ENSGT00940000156896	ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00940000160907	ENSGT00390000013443.d ##22	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000153498.B.a.a	ENSGT00940000154434.b	ENSGT00940000154434.a.b	ENSGT00940000154434.a.a.e	ENSGT00940000154434.a.a.f	ENSGT00390000000375	ENSGT00730000111317.d	ENSGT00940000161430	ENSGT00940000161373	ENSGT00390000002955	ENSGT00530000063839	ENSGT00390000009531
Bonobo	MODERN SPECIES	22	DMRT1 (ENSPPAG00000036830)	ENSPPAG00000027768	DMRT2 (ENSPPAG00000033739)	SMARCA2 (ENSPPAG00000038717)	ENSPPAG00000042332	ENSPPAG00000042393	VLDLR (ENSPPAG00000029389)	KCNV2 (ENSPPAG00000040791)	PUM3 (ENSPPAG00000041337)	ENSPPAG00000029157	RFX3 (ENSPPAG00000039978)	ENSPPAG00000011368	GLIS3 (ENSPPAG00000043097)	SLC1A1 (ENSPPAG00000027502)	SPATA6L (ENSPPAG00000010175)	CDC37L1 (ENSPPAG00000038614) ##22	AK3 (ENSPPAG00000033568)	RCL1 (ENSPPAG00000037958)	JAK2 (ENSPPAG00000019000)	ENSPPAG00000038776	INSL6 (ENSPPAG00000002535)	RLN2 (ENSPPAG00000025312)	RLN1 (ENSPPAG00000029999)	PLGRKT (ENSPPAG00000030588)	ENSPPAG00000031342	CD274 (ENSPPAG00000034663)	PDCD1LG2 (ENSPPAG00000030710)	RIC1 (ENSPPAG00000039773)	ERMP1 (ENSPPAG00000039739)	MLANA (ENSPPAG00000038099)	KIAA2026 (ENSPPAG00000011370)
Chimpanzee	MODERN SPECIES	22	DMRT3 (ENSPTRG00000020729)	DMRT2 (ENSPTRG00000020730)	SMARCA2 (ENSPTRG00000051168)	ENSPTRG00000052144	ENSPTRG00000047815	VLDLR (ENSPTRG00000020732)	KCNV2 (ENSPTRG00000020734)	PUM3 (ENSPTRG00000020735)	ENSPTRG00000046907	RFX3 (ENSPTRG00000048670)	ENSPTRG00000050873	GLIS3 (ENSPTRG00000020738)	SLC1A1 (ENSPTRG00000020739)	SPATA6L (ENSPTRG00000020740)	PLPP6 (ENSPTRG00000044921)	CDC37L1 (ENSPTRG00000020741) ##22	AK3 (ENSPTRG00000020742)	RCL1 (ENSPTRG00000020743)	JAK2 (ENSPTRG00000020744)	ENSPTRG00000052532	INSL6 (ENSPTRG00000020748)	INSL4 (ENSPTRG00000020750)	RLN2 (ENSPTRG00000045482)	RLN1 (ENSPTRG00000050353)	PLGRKT (ENSPTRG00000020753)	ENSPTRG00000046654	CD274 (ENSPTRG00000020755)	PDCD1LG2 (ENSPTRG00000020756)	RIC1 (ENSPTRG00000020757)	ERMP1 (ENSPTRG00000020760)	MLANA (ENSPTRG00000020761)
Human	MODERN SPECIES	21	ZNG1A (ENSG00000172785)	DOCK8 (ENSG00000107099)	KANK1 (ENSG00000107104)	DMRT1 (ENSG00000137090)	DMRT3 (ENSG00000064218)	DMRT2 (ENSG00000173253)	SMARCA2 (ENSG00000080503)	VLDLR (ENSG00000147852)	KCNV2 (ENSG00000168263)	PUM3 (ENSG00000080608)	RFX3 (ENSG00000080298)	GLIS3 (ENSG00000107249)	SLC1A1 (ENSG00000106688)	SPATA6L (ENSG00000106686)	PLPP6 (ENSG00000205808)	CDC37L1 (ENSG00000106993) ##22	AK3 (ENSG00000147853)	RCL1 (ENSG00000120158)	JAK2 (ENSG00000096968)	INSL6 (ENSG00000120210)	INSL4 (ENSG00000120211)	RLN2 (ENSG00000107014)	RLN1 (ENSG00000107018)	PLGRKT (ENSG00000107020)	CD274 (ENSG00000120217)	PDCD1LG2 (ENSG00000197646)	RIC1 (ENSG00000107036)	ERMP1 (ENSG00000099219)	KIAA2026 (ENSG00000183354)	MLANA (ENSG00000120215)	RANBP6 (ENSG00000137040)
Gorilla	MODERN SPECIES	22	DMRT1 (ENSGGOG00000013298)	DMRT3 (ENSGGOG00000013303)	DMRT2 (ENSGGOG00000025101)	ENSGGOG00000039224	SMARCA2 (ENSGGOG00000000513)	ENSGGOG00000038609	VLDLR (ENSGGOG00000001362)	KCNV2 (ENSGGOG00000000231)	PUM3 (ENSGGOG00000006143)	ENSGGOG00000022372	RFX3 (ENSGGOG00000003805)	GLIS3 (ENSGGOG00000038970)	SLC1A1 (ENSGGOG00000000262)	PLPP6 (ENSGGOG00000040149)	SPATA6L (ENSGGOG00000034964)	CDC37L1 (ENSGGOG00000006889) ##22	AK3 (ENSGGOG00000028122)	RCL1 (ENSGGOG00000015041)	ENSGGOG00000022573	JAK2 (ENSGGOG00000007243)	INSL6 (ENSGGOG00000008771)	INSL4 (ENSGGOG00000036799)	RLN2 (ENSGGOG00000026430)	RLN1 (ENSGGOG00000005891)	PLGRKT (ENSGGOG00000004113)	CD274 (ENSGGOG00000008540)	PDCD1LG2 (ENSGGOG00000001681)	RIC1 (ENSGGOG00000004550)	ERMP1 (ENSGGOG00000001865)	MLANA (ENSGGOG00000016251)	KIAA2026 (ENSGGOG00000028212)
Orangutan	MODERN SPECIES	22	KANK1 (ENSPPYG00000019262)	DMRT1 (ENSPPYG00000019261)	DMRT3 (ENSPPYG00000019260)	DMRT2 (ENSPPYG00000035747)	SMARCA2 (ENSPPYG00000019258)	ENSPPYG00000041078	VLDLR (ENSPPYG00000019257)	KCNV2 (ENSPPYG00000019256)	PUM3 (ENSPPYG00000019255)	ENSPPYG00000019254	RFX3 (ENSPPYG00000019253)	GLIS3 (ENSPPYG00000019250)	SLC1A1 (ENSPPYG00000019249)	PLPP6 (ENSPPYG00000019248)	SPATA6L (ENSPPYG00000019247)	CDC37L1 (ENSPPYG00000019246) ##22	AK3 (ENSPPYG00000019245)	RCL1 (ENSPPYG00000019244)	JAK2 (ENSPPYG00000019243)	INSL6 (ENSPPYG00000019242)	INSL4 (ENSPPYG00000019240)	RLN2 (ENSPPYG00000040733)	RLN1 (ENSPPYG00000019239)	PLGRKT (ENSPPYG00000019238)	CD274 (ENSPPYG00000019237)	PDCD1LG2 (ENSPPYG00000019236)	RIC1 (ENSPPYG00000019235)	ERMP1 (ENSPPYG00000019234)	MLANA (ENSPPYG00000019233)	KIAA2026 (ENSPPYG00000029402)	ENSPPYG00000032896
Gibbon	MODERN SPECIES	10	DMRT2 (ENSNLEG00000008564)	SMARCA2 (ENSNLEG00000008575)	ENSNLEG00000029055	ENSNLEG00000008695	VLDLR (ENSNLEG00000008596)	KCNV2 (ENSNLEG00000008701)	PUM3 (ENSNLEG00000008712)	ENSNLEG00000029981	RFX3 (ENSNLEG00000008785)	ENSNLEG00000028743	ENSNLEG00000034817	ENSNLEG00000035119	SLC1A1 (ENSNLEG00000031411)	SPATA6L (ENSNLEG00000008860)	ENSNLEG00000028049	CDC37L1 (ENSNLEG00000008879) ##22	AK3 (ENSNLEG00000008885)	RCL1 (ENSNLEG00000008891)	JAK2 (ENSNLEG00000008897)	ENSNLEG00000027963	INSL6 (ENSNLEG00000008974)	INSL4 (ENSNLEG00000008978)	RLN2 (ENSNLEG00000008980)	RLN1 (ENSNLEG00000008986)	PLGRKT (ENSNLEG00000008991)	ENSNLEG00000028615	CD274 (ENSNLEG00000009009)	PDCD1LG2 (ENSNLEG00000009028)	RIC1 (ENSNLEG00000009045)	ERMP1 (ENSNLEG00000009085)	MLANA (ENSNLEG00000009096)
Cercopithecidae	ANCESTRAL SPECIES	9	ENSGT00940000156282.a.a	ENSGT00940000154821.b	ENSGT00910000146995	ENSGT00940000154318.B.i.b	ENSGT00520000061590	ENSGT00940000155460	ENSGT00940000157438	ENSGT00390000015757	ENSGT00390000004049.cb	ENSGT01050000244879.a.a.b	ENSGT00910000146957	ENSGT00940000156896	ENSGT00940000155397.b	ENSGT00940000160907	ENSGT00530000063821.b.b	ENSGT00390000013443.d ##22	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000153498.B.a.a	ENSGT00940000154434.b	ENSGT00940000154434.a.b	ENSGT00940000154434.a.a.e	ENSGT00390000000375	ENSGT00730000111317.d	ENSGT00940000161430	ENSGT00940000161373	ENSGT00390000002955	ENSGT00530000063839	ENSGT00390000009531	ENSGT00390000011483
Cercopithecinae	ANCESTRAL SPECIES	12	ENSGT00940000156282.a.a	ENSGT00940000154821.b	ENSGT00910000146995	ENSGT00940000154318.B.i.b	ENSGT00520000061590	ENSGT00940000155460	ENSGT00940000157438	ENSGT00390000015757	ENSGT00390000004049.cb	ENSGT01050000244879.a.a.b	ENSGT00910000146957	ENSGT00940000156896	ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00940000160907	ENSGT00390000013443.d ##22	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000153498.B.a.a	ENSGT00940000154434.b	ENSGT00940000154434.a.b	ENSGT00940000154434.a.a.e	ENSGT00390000000375	ENSGT00730000111317.d	ENSGT00940000161430	ENSGT00940000161373	ENSGT00390000002955	ENSGT00530000063839	ENSGT00390000009531	ENSGT00390000011483
Vervet Monkey	MODERN SPECIES	3	DOCK8 (ENSCSAG00000008591)	KANK1 (ENSCSAG00000008611)	DMRT1 (ENSCSAG00000008623)	DMRT3 (ENSCSAG00000008627)	DMRT2 (ENSCSAG00000008632)	SMARCA2 (ENSCSAG00000008650)	ENSCSAG00000008657	VLDLR (ENSCSAG00000008671)	KCNV2 (ENSCSAG00000008677)	PUM3 (ENSCSAG00000008691)	RFX3 (ENSCSAG00000008704)	ENSCSAG00000008711	SLC1A1 (ENSCSAG00000008723)	PLPP6 (ENSCSAG00000018491)	SPATA6L (ENSCSAG00000008768)	CDC37L1 (ENSCSAG00000008790) ##22	AK3 (ENSCSAG00000008801)	RCL1 (ENSCSAG00000008811)	JAK2 (ENSCSAG00000008828)	INSL6 (ENSCSAG00000008855)	INSL4 (ENSCSAG00000008859)	RLN2 (ENSCSAG00000008867)	PLGRKT (ENSCSAG00000008877)	CD274 (ENSCSAG00000008879)	PDCD1LG2 (ENSCSAG00000008883)	RIC1 (ENSCSAG00000008890)	ERMP1 (ENSCSAG00000008897)	MLANA (ENSCSAG00000008907)	KIAA2026 (ENSCSAG00000008912)	RANBP6 (ENSCSAG00000018489)	IL33 (ENSCSAG00000008936)
Cercopithecinae_a	ANCESTRAL SPECIES	12	ENSGT00940000154821.b	ENSGT00910000146995	ENSGT00940000154318.B.i.b	ENSGT00520000061590	ENSGT00940000155460	ENSGT00940000157438	ENSGT00390000015757	ENSGT00390000004049.cb	ENSGT01050000244879.a.a.b	ENSGT00940000159989.h	ENSGT00910000146957	ENSGT00940000156896	ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00940000160907	ENSGT00390000013443.d ##22	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000153498.B.a.a	ENSGT00940000154434.b	ENSGT00940000154434.a.b	ENSGT00940000154434.a.a.e	ENSGT00940000154937.s.b	ENSGT00390000000375	ENSGT00730000111317.d	ENSGT00940000161430	ENSGT00940000161373	ENSGT00390000002955	ENSGT00530000063839	ENSGT00390000009531
Macaca	ANCESTRAL SPECIES	10	ENSGT00940000154821.b	ENSGT00910000146995	ENSGT00940000154318.B.i.b	ENSGT00520000061590	ENSGT00940000155460	ENSGT00940000157438	ENSGT00390000015757	ENSGT00390000004049.cb	ENSGT01050000244879.a.a.b	ENSGT00940000159989.h	ENSGT00910000146957	ENSGT00940000156896	ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00940000160907	ENSGT00390000013443.d ##22	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000153498.B.a.a	ENSGT00940000154434.b	ENSGT00940000154434.a.b	ENSGT00940000154434.a.a.e	ENSGT00940000154937.s.b	ENSGT00390000000375	ENSGT00940000161430	ENSGT00940000161373	ENSGT00390000002955	ENSGT00530000063839	ENSGT00390000009531	ENSGT00390000011483
Macaca_a	ANCESTRAL SPECIES	10	ENSGT00940000155876	ENSGT00940000154886.a.a	ENSGT01100000264112.b.a	ENSGT00940000160420	ENSGT00940000156282.a.a	ENSGT00940000154821.b	ENSGT00910000146995	ENSGT00940000155460	ENSGT00940000157438	ENSGT00390000015757	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00940000155397.b	ENSGT00940000160907	ENSGT00530000063821.b.b	ENSGT00390000013443.d ##22	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434.b	ENSGT00940000154434.a.b	ENSGT00940000154434.a.a.e	ENSGT00940000154937.s.b	ENSGT00990000207287	ENSGT00390000000375	ENSGT00940000161430	ENSGT00940000161373	ENSGT00390000002955	ENSGT00530000063839	ENSGT00390000009531	ENSGT00390000011483
Rhesus	MODERN SPECIES	6	ENSMMUG00000064601	KANK1 (ENSMMUG00000019862)	ENSMMUG00000061012	DMRT3 (ENSMMUG00000044083)	DMRT2 (ENSMMUG00000014844)	ENSMMUG00000051059 ##12	SMARCA2 (ENSMMUG00000015279)	VLDLR (ENSMMUG00000015093)	KCNV2 (ENSMMUG00000060949)	PUM3 (ENSMMUG00000002362)	RFX3 (ENSMMUG00000000802)	GLIS3 (ENSMMUG00000057568)	SLC1A1 (ENSMMUG00000000135)	PLPP6 (ENSMMUG00000059411)	SPATA6L (ENSMMUG00000000136)	CDC37L1 (ENSMMUG00000000141) ##22	AK3 (ENSMMUG00000000143)	RCL1 (ENSMMUG00000057331)	JAK2 (ENSMMUG00000014558)	INSL6 (ENSMMUG00000065127)	INSL4 (ENSMMUG00000058221)	RLN2 (ENSMMUG00000047971)	ENSMMUG00000057739	ENSMMUG00000060737	CD274 (ENSMMUG00000012235)	PLGRKT (ENSMMUG00000006197)	PDCD1LG2 (ENSMMUG00000017991)	ENSMMUG00000063608	RIC1 (ENSMMUG00000009020)	ERMP1 (ENSMMUG00000005469)	MLANA (ENSMMUG00000056663)
Crab-eating macaque	MODERN SPECIES	6	DMRT3 (ENSMFAG00000045391)	DMRT2 (ENSMFAG00000040812)	ENSMFAG00000058821	ENSMFAG00000056188	ENSMFAG00000003814	ENSMFAG00000048099	VLDLR (ENSMFAG00000032374)	KCNV2 (ENSMFAG00000055892)	PUM3 (ENSMFAG00000001430)	ENSMFAG00000049201	RFX3 (ENSMFAG00000000237)	ENSMFAG00000049557	ENSMFAG00000030908	SLC1A1 (ENSMFAG00000038163)	SPATA6L (ENSMFAG00000032285)	CDC37L1 (ENSMFAG00000000879) ##22	AK3 (ENSMFAG00000041698)	ENSMFAG00000049440	RCL1 (ENSMFAG00000037906)	JAK2 (ENSMFAG00000003627)	ENSMFAG00000054197	INSL6 (ENSMFAG00000027620)	INSL4 (ENSMFAG00000050840)	RLN2 (ENSMFAG00000060189)	ENSMFAG00000038755	ENSMFAG00000062108	PLGRKT (ENSMFAG00000000751)	ENSMFAG00000048939	CD274 (ENSMFAG00000044358)	PDCD1LG2 (ENSMFAG00000042841)	RIC1 (ENSMFAG00000032768)
Pig-tailed macaque	MODERN SPECIES	182	SMARCA2 (ENSMNEG00000041069)	ENSMNEG00000028744	ENSMNEG00000040152	ENSMNEG00000044919	VLDLR (ENSMNEG00000040863)	KCNV2 (ENSMNEG00000012723)	PUM3 (ENSMNEG00000035288)	ENSMNEG00000032248	RFX3 (ENSMNEG00000038188)	ENSMNEG00000042708	ENSMNEG00000040313	GLIS3 (ENSMNEG00000032738)	SLC1A1 (ENSMNEG00000029913)	SPATA6L (ENSMNEG00000044422)	PLPP6 (ENSMNEG00000001828)	CDC37L1 (ENSMNEG00000030663) ##22	AK3 (ENSMNEG00000041876)	RCL1 (ENSMNEG00000012288)	JAK2 (ENSMNEG00000031180)	ENSMNEG00000032986	INSL6 (ENSMNEG00000011366)	INSL4 (ENSMNEG00000038309)	RLN2 (ENSMNEG00000045554)	ENSMNEG00000039597	ENSMNEG00000006679	PLGRKT (ENSMNEG00000035542)	CD274 (ENSMNEG00000044065)	PDCD1LG2 (ENSMNEG00000022031)
Cercopithecinae_b	ANCESTRAL SPECIES	7	ENSGT00940000156282.a.a	ENSGT00940000154821.b	ENSGT00940000154318.B.i.b	ENSGT00520000061590	ENSGT00940000155460	ENSGT00940000157438	ENSGT00390000015757	ENSGT00390000004049.cb	ENSGT01050000244879.a.a.b	ENSGT00940000159989.h	ENSGT00910000146957	ENSGT00940000156896	ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00940000160907	ENSGT00390000013443.d ##22	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000153498.B.a.a	ENSGT00940000154434.b	ENSGT00940000154434.a.b	ENSGT00940000154434.a.a.e	ENSGT00940000154937.s.b	ENSGT00390000000375	ENSGT00730000111317.d	ENSGT00940000161430	ENSGT00940000161373	ENSGT00390000002955	ENSGT00530000063839	ENSGT00390000009531
Olive baboon	MODERN SPECIES	4	DOCK8 (ENSPANG00000025117)	KANK1 (ENSPANG00000025125)	DMRT1 (ENSPANG00000025124)	DMRT3 (ENSPANG00000025123)	DMRT2 (ENSPANG00000025122)	SMARCA2 (ENSPANG00000025121)	ENSPANG00000042712	VLDLR (ENSPANG00000025120)	KCNV2 (ENSPANG00000025119)	PUM3 (ENSPANG00000025118)	RFX3 (ENSPANG00000025143)	ENSPANG00000046940	GLIS3 (ENSPANG00000025157)	SLC1A1 (ENSPANG00000025156)	SPATA6L (ENSPANG00000025154)	CDC37L1 (ENSPANG00000025153) ##22	AK3 (ENSPANG00000025152)	RCL1 (ENSPANG00000025151)	JAK2 (ENSPANG00000025145)	ENSPANG00000041678	INSL6 (ENSPANG00000025144)	INSL4 (ENSPANG00000051326)	RLN2 (ENSPANG00000040000)	ENSPANG00000023574	PLGRKT (ENSPANG00000025170)	CD274 (ENSPANG00000025169)	PDCD1LG2 (ENSPANG00000025172)	RIC1 (ENSPANG00000025173)	ERMP1 (ENSPANG00000025174)	MLANA (ENSPANG00000025182)	KIAA2026 (ENSPANG00000025181)
Cercopithecinae_d	ANCESTRAL SPECIES	34	ENSGT00940000156282.a.a	ENSGT00940000154821.b	ENSGT00940000154318.B.i.b	ENSGT00520000061590	ENSGT00940000155460	ENSGT00940000157438	ENSGT00390000015757	ENSGT00390000004049.cb	ENSGT01050000244879.a.a.b	ENSGT00940000159989.h	ENSGT00910000146957	ENSGT00940000156896	ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00940000160907	ENSGT00390000013443.d ##22	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000153498.B.a.a	ENSGT00940000154434.b	ENSGT00940000154434.a.b	ENSGT00940000154434.a.a.e	ENSGT00940000154937.s.b	ENSGT00390000000375	ENSGT00730000111317.d	ENSGT00940000161430	ENSGT00940000161373	ENSGT00390000002955	ENSGT00530000063839	ENSGT00390000009531
Sooty mangabey	MODERN SPECIES	629	DMRT2 (ENSCATG00000032878)	SMARCA2 (ENSCATG00000031470)	ENSCATG00000034215	ENSCATG00000014393	VLDLR (ENSCATG00000033177)	KCNV2 (ENSCATG00000037552)	PUM3 (ENSCATG00000024880)	ENSCATG00000034924	ENSCATG00000029808	RFX3 (ENSCATG00000034639)	ENSCATG00000030409	GLIS3 (ENSCATG00000038488)	SLC1A1 (ENSCATG00000039114)	PLPP6 (ENSCATG00000022355)	SPATA6L (ENSCATG00000043815)	CDC37L1 (ENSCATG00000041223) ##22	AK3 (ENSCATG00000044404)	RCL1 (ENSCATG00000034721)	JAK2 (ENSCATG00000024457)	INSL6 (ENSCATG00000029369)	INSL4 (ENSCATG00000040894)	RLN2 (ENSCATG00000039089)	ENSCATG00000039027	ENSCATG00000019138	PLGRKT (ENSCATG00000038359)	CD274 (ENSCATG00000044292)	PDCD1LG2 (ENSCATG00000017898)	RIC1 (ENSCATG00000011981)	ERMP1 (ENSCATG00000044284)	MLANA (ENSCATG00000044699)	KIAA2026 (ENSCATG00000030148)
Drill	MODERN SPECIES	978		SMARCA2 (ENSMLEG00000027418)	ENSMLEG00000041221	ENSMLEG00000035182	VLDLR (ENSMLEG00000032288)	KCNV2 (ENSMLEG00000032357)	PUM3 (ENSMLEG00000034820)	ENSMLEG00000041919	RFX3 (ENSMLEG00000033860)	ENSMLEG00000038681	ENSMLEG00000000662	GLIS3 (ENSMLEG00000040353)	SLC1A1 (ENSMLEG00000042172)	SPATA6L (ENSMLEG00000034746)	PLPP6 (ENSMLEG00000009133)	CDC37L1 (ENSMLEG00000014590) ##22	AK3 (ENSMLEG00000032869)	RCL1 (ENSMLEG00000043088)	JAK2 (ENSMLEG00000030814)	ENSMLEG00000029968	INSL6 (ENSMLEG00000042955)	INSL4 (ENSMLEG00000034989)	RLN2 (ENSMLEG00000039515)	ENSMLEG00000035630	PLGRKT (ENSMLEG00000042174)	ENSMLEG00000042007	CD274 (ENSMLEG00000031295)	PDCD1LG2 (ENSMLEG00000021844)	RIC1 (ENSMLEG00000032920)	ERMP1 (ENSMLEG00000033422)	MLANA (ENSMLEG00000029385)
Rhinopithecus	ANCESTRAL SPECIES	547										ENSGT01050000244879.a.a.b	ENSGT00910000146957	ENSGT00940000156896	ENSGT00940000155397.b	ENSGT00940000160907	ENSGT00530000063821.b.b	ENSGT00390000013443.d ##22	ENSGT00940000155120	ENSGT00530000063404.a
Black snub-nosed monkey	MODERN SPECIES	1532													SLC1A1 (ENSRBIG00000035099)	PLPP6 (ENSRBIG00000001345)	SPATA6L (ENSRBIG00000032203)	CDC37L1 (ENSRBIG00000040333) ##22	AK3 (ENSRBIG00000031255)	RCL1 (ENSRBIG00000035818)
Golden snub-nosed monkey	MODERN SPECIES	768										RFX3 (ENSRROG00000033247)	ENSRROG00000033006	GLIS3 (ENSRROG00000031282)	SLC1A1 (ENSRROG00000032409)	PLPP6 (ENSRROG00000013349)	SPATA6L (ENSRROG00000029293)	CDC37L1 (ENSRROG00000036422) ##22	AK3 (ENSRROG00000036255)	RCL1 (ENSRROG00000029781)
Platyrrhini	ANCESTRAL SPECIES	8	ENSGT00940000154886.a.a	ENSGT00940000156489	ENSGT00940000160420	ENSGT00940000156282.a.a	ENSGT00940000154821.b	ENSGT00910000146995	ENSGT00520000061590	ENSGT00940000155460	ENSGT00940000157438	ENSGT00390000015757	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00940000160907	ENSGT00390000013443.d ##22	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434.b	ENSGT00940000154434.a.a	ENSGT00390000000375	ENSGT00940000161430	ENSGT00940000161373	ENSGT00390000002955	ENSGT00530000063839	ENSGT00390000009531	ENSGT00390000011483	ENSGT00940000162767	ENSGT00390000005185	ENSGT00390000008296.b.a.a
Cebidae	ANCESTRAL SPECIES	7	ENSGT00940000154886.a.a	ENSGT00940000156489	ENSGT00940000160420	ENSGT00940000156282.a.a	ENSGT00940000154821.b	ENSGT00910000146995	ENSGT00520000061590	ENSGT00940000155460	ENSGT00940000157438	ENSGT00390000015757	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00940000160907	ENSGT00390000013443.d ##22	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434.b	ENSGT00940000154434.a.a	ENSGT00390000000375	ENSGT00940000161430	ENSGT00940000161373	ENSGT00390000002955	ENSGT00530000063839	ENSGT00390000009531	ENSGT00390000011483	ENSGT00940000162767	ENSGT00940000167431	ENSGT00390000005185
Marmoset	MODERN SPECIES		ENSCJAG00000084547	DMRT3 (ENSCJAG00000063670)	DMRT2 (ENSCJAG00000010690)	SMARCA2 (ENSCJAG00000010710)	ENSCJAG00000042690	VLDLR (ENSCJAG00000010772)	KCNV2 (ENSCJAG00000042809)	PUM3 (ENSCJAG00000010917)	RFX3 (ENSCJAG00000010996)	GLIS3 (ENSCJAG00000011083)	ENSCJAG00000073768 ##32	SLC1A1 (ENSCJAG00000011113)	SPATA6L (ENSCJAG00000011136)	PLPP6 (ENSCJAG00000063898)	AK3 (ENSCJAG00000011188)	CDC37L1 (ENSCJAG00000011155) ##22	ENSCJAG00000059464	RCL1 (ENSCJAG00000011202)	JAK2 (ENSCJAG00000011228)	ENSCJAG00000076577	INSL6 (ENSCJAG00000011358)	ENSCJAG00000038187	PLGRKT (ENSCJAG00000011374)	CD274 (ENSCJAG00000011388)	PDCD1LG2 (ENSCJAG00000048652)	ENSCJAG00000048011	RIC1 (ENSCJAG00000011447)	ERMP1 (ENSCJAG00000011528)	MLANA (ENSCJAG00000011596)	KIAA2026 (ENSCJAG00000045189)	ENSCJAG00000082309
Cebidae_a	ANCESTRAL SPECIES	92	ENSGT00940000160420	ENSGT00940000156282.a.a	ENSGT00940000154821.b	ENSGT00910000146995	ENSGT00520000061590	ENSGT00940000155460	ENSGT00940000157438	ENSGT00390000015757	ENSGT00390000004049.ab	ENSGT00530000063402.a.h	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00940000160907	ENSGT00390000013443.d ##22	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434.b
Bolivian squirrel monkey	MODERN SPECIES	118	SMARCA2 (ENSSBOG00000034827)	ENSSBOG00000020747	VLDLR (ENSSBOG00000031091)	KCNV2 (ENSSBOG00000023504)	PUM3 (ENSSBOG00000028066)	ENSSBOG00000022458	ENSSBOG00000026932	ENSSBOG00000016907	RFX3 (ENSSBOG00000031103)	GLIS3 (ENSSBOG00000032997)	ENSSBOG00000019687	SLC1A1 (ENSSBOG00000032684)	SPATA6L (ENSSBOG00000026985)	ENSSBOG00000022998	PLPP6 (ENSSBOG00000019035)	CDC37L1 (ENSSBOG00000032737) ##22	AK3 (ENSSBOG00000002841)	ENSSBOG00000018606	RCL1 (ENSSBOG00000026369)
Capuchin	MODERN SPECIES	227		SMARCA2 (ENSCCAG00000030636)	ENSCCAG00000032291	ENSCCAG00000024458	VLDLR (ENSCCAG00000034631)	KCNV2 (ENSCCAG00000006608)	PUM3 (ENSCCAG00000032650)	ENSCCAG00000023250	ENSCCAG00000034048	ENSCCAG00000032475	RFX3 (ENSCCAG00000030352)	GLIS3 (ENSCCAG00000025272)	SLC1A1 (ENSCCAG00000024828)	SPATA6L (ENSCCAG00000019855)	PLPP6 (ENSCCAG00000017149)	CDC37L1 (ENSCCAG00000036002) ##22	AK3 (ENSCCAG00000024553)	RCL1 (ENSCCAG00000033505)	JAK2 (ENSCCAG00000022686)	INSL6 (ENSCCAG00000028704)
Mas night monkey	MODERN SPECIES	599	DMRT3 (ENSANAG00000027840)	DMRT2 (ENSANAG00000020591)	ENSANAG00000018592	SMARCA2 (ENSANAG00000026498)	ENSANAG00000029407	VLDLR (ENSANAG00000020851)	KCNV2 (ENSANAG00000035114)	PUM3 (ENSANAG00000024520)	ENSANAG00000036903	RFX3 (ENSANAG00000038145)	GLIS3 (ENSANAG00000038022)	SLC1A1 (ENSANAG00000032125)	PLPP6 (ENSANAG00000019076)	SPATA6L (ENSANAG00000030395)	ENSANAG00000029767	CDC37L1 (ENSANAG00000028426) ##22	AK3 (ENSANAG00000037726)	RCL1 (ENSANAG00000037372)	JAK2 (ENSANAG00000027034)	ENSANAG00000023659	PLGRKT (ENSANAG00000022854)	CD274 (ENSANAG00000028618)	ENSANAG00000019149	PDCD1LG2 (ENSANAG00000020809)	ENSANAG00000025398	RIC1 (ENSANAG00000037454)	ERMP1 (ENSANAG00000034115)	MLANA (ENSANAG00000036926)	KIAA2026 (ENSANAG00000028777)	ENSANAG00000033312	IL33 (ENSANAG00000019780)
Tarsier	MODERN SPECIES	2085																CDC37L1 (ENSTSYG00000001174) ##22	AK3 (ENSTSYG00000001175)	RCL1 (ENSTSYG00000009592)	ENSTSYG00000028202	JAK2 (ENSTSYG00000010422)	INSL6 (ENSTSYG00000003808)
Strepsirrhini	ANCESTRAL SPECIES	8	ENSGT00940000154886.a.a	ENSGT00940000156489	ENSGT00940000160420	ENSGT00940000156282.a.a	ENSGT00940000154821.b	ENSGT00520000061590	ENSGT00940000155460	ENSGT00940000157438	ENSGT00390000015757	ENSGT00940000164013	ENSGT01050000244879.a.a.b	ENSGT00940000156896.q	ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00940000160907	ENSGT00390000013443.d ##22	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434.b	ENSGT00940000154434.a.a	ENSGT00390000000375	ENSGT00940000161430	ENSGT00940000161373	ENSGT00390000002955	ENSGT00530000063839	ENSGT00390000009531	ENSGT00390000011483	ENSGT00940000162767	ENSGT00390000005185	ENSGT00940000163110
Lemuriformes	ANCESTRAL SPECIES	59	ENSGT00940000154886.a.a	ENSGT00940000156489	ENSGT00940000160420	ENSGT00940000156282.a.a	ENSGT00940000154821.b	ENSGT00520000061590	ENSGT00940000155460	ENSGT00940000157438	ENSGT00390000015757	ENSGT00940000164013	ENSGT01050000244879.a.a.b	ENSGT00940000156896.q	ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00940000160907	ENSGT00390000013443.d ##22	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434.b	ENSGT00940000154434.a.a	ENSGT00390000000375	ENSGT00940000161430	ENSGT00940000161373	ENSGT00390000002955	ENSGT00530000063839	ENSGT00390000009531	ENSGT00390000011483	ENSGT00940000162767	ENSGT00390000005185	ENSGT00940000163110
Mouse lemur	MODERN SPECIES	1	KANK1 (ENSMICG00000010410)	DMRT1 (ENSMICG00000010417)	DMRT3 (ENSMICG00000044854)	DMRT2 (ENSMICG00000010426)	SMARCA2 (ENSMICG00000005162)	ENSMICG00000005190	VLDLR (ENSMICG00000005182)	KCNV2 (ENSMICG00000005193)	PUM3 (ENSMICG00000045916)	ENSMICG00000029542	RFX3 (ENSMICG00000011871)	ENSMICG00000041775	ENSMICG00000031277	SLC1A1 (ENSMICG00000005171)	SPATA6L (ENSMICG00000017688)	CDC37L1 (ENSMICG00000017690) ##22	ENSMICG00000013112	RCL1 (ENSMICG00000015562)	JAK2 (ENSMICG00000003885)	INSL6 (ENSMICG00000044551)	ENSMICG00000043730	PLGRKT (ENSMICG00000031798)	CD274 (ENSMICG00000035171)	PDCD1LG2 (ENSMICG00000004284)	RIC1 (ENSMICG00000016293)	ENSMICG00000030745	ERMP1 (ENSMICG00000016329)	MLANA (ENSMICG00000048054)	KIAA2026 (ENSMICG00000032366)	ENSMICG00000026566	IL33 (ENSMICG00000009247)
Lemuriformes_a	ANCESTRAL SPECIES	86	ENSGT00940000155876	ENSGT00940000154886.a.a	ENSGT00940000156489	ENSGT00940000160420	ENSGT00940000156282.a.a	ENSGT00940000154821.b	ENSGT00520000061590	ENSGT00940000155460	ENSGT00940000157438	ENSGT00390000015757	ENSGT01050000244879.a.a.b	ENSGT00940000156896.q	ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00940000160907	ENSGT00390000013443.d ##22	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434.b	ENSGT00940000154434.a.a	ENSGT00390000000375	ENSGT00940000161430	ENSGT00940000161373	ENSGT00390000002955	ENSGT00530000063839	ENSGT00390000009531	ENSGT00390000011483	ENSGT00940000162767	ENSGT00390000005185	ENSGT00940000163110
Greater bamboo lemur	MODERN SPECIES	152	DMRT1 (ENSPSMG00000025222)	DMRT3 (ENSPSMG00000025210)	DMRT2 (ENSPSMG00000025206)	ENSPSMG00000025195	SMARCA2 (ENSPSMG00000025173)	ENSPSMG00000025075	VLDLR (ENSPSMG00000025041)	KCNV2 (ENSPSMG00000024960)	ENSPSMG00000024956	ENSPSMG00000024950	RFX3 (ENSPSMG00000024938)	GLIS3 (ENSPSMG00000024897)	SLC1A1 (ENSPSMG00000024890)	PLPP6 (ENSPSMG00000024881)	SPATA6L (ENSPSMG00000024878)	CDC37L1 (ENSPSMG00000024864) ##22	AK3 (ENSPSMG00000024859)	RCL1 (ENSPSMG00000024848)	JAK2 (ENSPSMG00000024838)	ENSPSMG00000024795	INSL6 (ENSPSMG00000024793)	ENSPSMG00000024791	PLGRKT (ENSPSMG00000024787)	CD274 (ENSPSMG00000024783)	PDCD1LG2 (ENSPSMG00000024781)
Coquerels sifaka	MODERN SPECIES	549					SMARCA2 (ENSPCOG00000025709)	ENSPCOG00000026110	ENSPCOG00000019796	VLDLR (ENSPCOG00000026506)	KCNV2 (ENSPCOG00000023607)	PUM3 (ENSPCOG00000027325)	RFX3 (ENSPCOG00000022172)	GLIS3 (ENSPCOG00000022619)	SLC1A1 (ENSPCOG00000013653)	SPATA6L (ENSPCOG00000001879)	PLPP6 (ENSPCOG00000013586)	CDC37L1 (ENSPCOG00000025983) ##22	ENSPCOG00000024436	RCL1 (ENSPCOG00000009611)
Bushbaby	MODERN SPECIES	121	ENSOGAG00000031226	KANK1 (ENSOGAG00000001985)	DMRT1 (ENSOGAG00000001989)	DMRT3 (ENSOGAG00000026565)	DMRT2 (ENSOGAG00000001994)	ENSOGAG00000025218	SMARCA2 (ENSOGAG00000017053)	VLDLR (ENSOGAG00000013312)	KCNV2 (ENSOGAG00000030433)	ENSOGAG00000008125	RFX3 (ENSOGAG00000007762)	GLIS3 (ENSOGAG00000007376)	SLC1A1 (ENSOGAG00000007464)	PLPP6 (ENSOGAG00000007472)	SPATA6L (ENSOGAG00000007468)	CDC37L1 (ENSOGAG00000007475) ##22	AK3 (ENSOGAG00000007477)	RCL1 (ENSOGAG00000007480)	JAK2 (ENSOGAG00000012246)	ENSOGAG00000009500	PLGRKT (ENSOGAG00000003280)	CD274 (ENSOGAG00000003282)	PDCD1LG2 (ENSOGAG00000003284)	RIC1 (ENSOGAG00000012009)	ERMP1 (ENSOGAG00000012020)	MLANA (ENSOGAG00000010986)	ENSOGAG00000030737	ENSOGAG00000032415	RANBP6 (ENSOGAG00000010992)	ENSOGAG00000004525	TPD52L3 (ENSOGAG00000011718)
Euarchontoglires_A	ANCESTRAL SPECIES	10	ENSGT00940000156489.n	ENSGT00940000160420	ENSGT00940000156282.a.a	ENSGT00940000154821.b	ENSGT00520000061590	ENSGT00940000155460	ENSGT00940000157438	ENSGT00390000015757	ENSGT00940000164013	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00900000143153	ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00940000160907	ENSGT00390000013443.d ##22	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434.b	ENSGT00940000154434.a.a	ENSGT00390000000375	ENSGT00940000161430	ENSGT00940000161373	ENSGT00390000002955	ENSGT00530000063839	ENSGT00390000009531	ENSGT00390000011483	ENSGT00940000162767	ENSGT00390000005185	ENSGT00940000163110
Tree shrew	MODERN SPECIES	183															ENSTBEG00000006755	CDC37L1 (ENSTBEG00000007827) ##22	AK3 (ENSTBEG00000008054)
Glires	ANCESTRAL SPECIES	9	ENSGT00940000154886.a.a	ENSGT00940000156489.n	ENSGT00940000160420	ENSGT00940000156282.a.a	ENSGT00940000154821.b	ENSGT00520000061590	ENSGT00940000155460	ENSGT00940000157438	ENSGT00390000015757	ENSGT00940000164013	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00940000160907	ENSGT00390000013443.d ##22	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434.b	ENSGT00940000154434.a.a	ENSGT00390000000375	ENSGT00940000161430	ENSGT00940000161373	ENSGT00390000002955	ENSGT00530000063839	ENSGT00390000009531	ENSGT00390000011483	ENSGT00940000162767	ENSGT00390000005185	ENSGT00940000163110
Lagomorpha	ANCESTRAL SPECIES	68								ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00940000153064.b.d	ENSGT01050000244818	ENSGT00950000183016.E.b.b	ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00940000160907	ENSGT00390000013443.d ##22	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434.b	ENSGT00390000000375	ENSGT00940000161430	ENSGT00390000002955	ENSGT00530000063839	ENSGT00390000009531	ENSGT00390000011483	ENSGT00940000167431	ENSGT00390000005185	ENSGT00940000163110	ENSGT00390000008296.b.a.a	ENSGT00390000017970
Rabbit	MODERN SPECIES		ENSOCUG00000022775	VLDLR (ENSOCUG00000002231)	KCNV2 (ENSOCUG00000004385)	ENSOCUG00000004189	ENSOCUG00000039572	RFX3 (ENSOCUG00000014086)	ENSOCUG00000023393	ENSOCUG00000027590	GLIS3 (ENSOCUG00000023004)	ENSOCUG00000036407	ENSOCUG00000013264	ENSOCUG00000026987	ENSOCUG00000022202	PLPP6 (ENSOCUG00000003465)	SPATA6L (ENSOCUG00000003455)	CDC37L1 (ENSOCUG00000003468) ##22	ENSOCUG00000011411	ENSOCUG00000013279	RCL1 (ENSOCUG00000008161)	JAK2 (ENSOCUG00000016853)	ENSOCUG00000037721	INSL6 (ENSOCUG00000013682)	ENSOCUG00000031086	ENSOCUG00000037426	ENSOCUG00000030169	ENSOCUG00000038359	ENSOCUG00000030357	ENSOCUG00000025640	PLGRKT (ENSOCUG00000008095)	CD274 (ENSOCUG00000008117)	ENSOCUG00000032240
Pika	MODERN SPECIES	4916													SLC1A1 (ENSOPRG00000010884)	SPATA6L (ENSOPRG00000010908)	ENSOPRG00000010928	CDC37L1 (ENSOPRG00000010942) ##22	AK3 (ENSOPRG00000010954)	RCL1 (ENSOPRG00000010965)
Rodentia	ANCESTRAL SPECIES	9	ENSGT00940000154886.a.a	ENSGT00940000156489.n	ENSGT00940000160420	ENSGT00940000156282.a.a	ENSGT00940000154821.b	ENSGT00520000061590	ENSGT00940000155460	ENSGT00940000157438	ENSGT00390000015757	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00940000155397.b	ENSGT00900000143153	ENSGT00530000063821.b.b	ENSGT00940000160907	ENSGT00390000013443.d ##22	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434.b	ENSGT00940000154434.a.a	ENSGT00390000000375	ENSGT00940000161430	ENSGT00940000161373	ENSGT00390000002955	ENSGT00530000063839	ENSGT00390000009531	ENSGT00390000011483	ENSGT00940000162767	ENSGT00390000005185	ENSGT00940000163110
Rodentia_A	ANCESTRAL SPECIES	11	ENSGT00940000154886.a.a	ENSGT00940000156489.n	ENSGT00940000160420	ENSGT00940000156282.a.a	ENSGT00940000154821.b	ENSGT00520000061590	ENSGT00940000155460	ENSGT00940000157438	ENSGT00390000015757	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00940000155397.b	ENSGT00900000143153	ENSGT00530000063821.b.b	ENSGT00940000160907	ENSGT00390000013443.d ##22	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434.b	ENSGT00940000154434.a.a	ENSGT00390000000375	ENSGT00940000161430	ENSGT00940000161373	ENSGT00390000002955	ENSGT00530000063839	ENSGT00390000009531	ENSGT00390000011483	ENSGT00940000162767	ENSGT00390000005185	ENSGT00940000163110
Sciuridae	ANCESTRAL SPECIES	6	ENSGT00940000154886.a.a	ENSGT00940000156489.n	ENSGT00940000160420	ENSGT00940000156282.a.a	ENSGT00940000154821.b	ENSGT00520000061590	ENSGT00940000155460	ENSGT00940000157438	ENSGT00390000015757	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00900000143153	ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00940000160907	ENSGT00390000013443.d ##22	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434.b	ENSGT00940000154434.a.a	ENSGT00390000000375	ENSGT00940000161430	ENSGT00940000161373	ENSGT00390000002955	ENSGT00530000063839	ENSGT00390000009531	ENSGT00390000011483	ENSGT00940000162767	ENSGT00390000005185	ENSGT00940000163110
Marmotini	ANCESTRAL SPECIES	1	ENSGT00940000154886.a.a	ENSGT00940000156489.n	ENSGT00940000160420	ENSGT00940000156282.a.a	ENSGT00940000154821.b	ENSGT00520000061590	ENSGT00940000155460	ENSGT00940000157438	ENSGT00390000015757	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00900000143153	ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00940000160907	ENSGT00390000013443.d ##22	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434.b	ENSGT00940000154434.a.a	ENSGT00390000000375	ENSGT00940000161430	ENSGT00940000161373	ENSGT00390000002955	ENSGT00530000063839.k	ENSGT00390000009531	ENSGT00390000011483	ENSGT00940000162767	ENSGT00390000005185	ENSGT00940000163110
Marmotini_b	ANCESTRAL SPECIES	88	ENSGT00940000154886.a.a	ENSGT00940000156489.n	ENSGT00940000160420	ENSGT00940000156282.a.a	ENSGT00940000154821.b	ENSGT00520000061590	ENSGT00940000155460	ENSGT00940000157438	ENSGT00390000015757	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00900000143153	ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00940000160907	ENSGT00390000013443.d ##22	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434.b
Squirrel	MODERN SPECIES	103	KANK1 (ENSSTOG00000010218)	DMRT1 (ENSSTOG00000010235)	DMRT3 (ENSSTOG00000023574)	DMRT2 (ENSSTOG00000026909)	SMARCA2 (ENSSTOG00000006812)	ENSSTOG00000031987	VLDLR (ENSSTOG00000006880)	KCNV2 (ENSSTOG00000020003)	PUM3 (ENSSTOG00000009586)	RFX3 (ENSSTOG00000006974)	GLIS3 (ENSSTOG00000000302)	ENSSTOG00000031708	SLC1A1 (ENSSTOG00000023583)	PLPP6 (ENSSTOG00000025831)	SPATA6L (ENSSTOG00000000018)	CDC37L1 (ENSSTOG00000000020) ##22	AK3 (ENSSTOG00000000021)	RCL1 (ENSSTOG00000000023)	JAK2 (ENSSTOG00000006679)	ENSSTOG00000016298
Alpin marmot	MODERN SPECIES	32	ENSMMMG00000003212	SMARCA2 (ENSMMMG00000002811)	ENSMMMG00000002785	ENSMMMG00000002765	VLDLR (ENSMMMG00000002594)	ENSMMMG00000002572	KCNV2 (ENSMMMG00000002550)	PUM3 (ENSMMMG00000002513)	ENSMMMG00000002504	GLIS3 (ENSMMMG00000002430)	ENSMMMG00000002416	ENSMMMG00000002405	SLC1A1 (ENSMMMG00000002380)	SPATA6L (ENSMMMG00000002361)	PLPP6 (ENSMMMG00000002356)	CDC37L1 (ENSMMMG00000002322) ##22	AK3 (ENSMMMG00000002286)	RCL1 (ENSMMMG00000002259)	JAK2 (ENSMMMG00000002174)	ENSMMMG00000002165	ENSMMMG00000002157	ENSMMMG00000002146	ENSMMMG00000002130	PLGRKT (ENSMMMG00000002117)	CD274 (ENSMMMG00000002100)	PDCD1LG2 (ENSMMMG00000002085)	RIC1 (ENSMMMG00000002031)	ENSMMMG00000002013	ENSMMMG00000002003	MLANA (ENSMMMG00000001977)	KIAA2026 (ENSMMMG00000001950)
Eurasian red squirrel	MODERN SPECIES	6	KANK1 (ENSSVLG00005023807)	DMRT1 (ENSSVLG00005023845)	DMRT3 (ENSSVLG00005023888)	DMRT2 (ENSSVLG00005023918)	SMARCA2 (ENSSVLG00005024009)	ENSSVLG00005024201	VLDLR (ENSSVLG00005024232)	KCNV2 (ENSSVLG00005024318)	PUM3 (ENSSVLG00005024338)	ENSSVLG00005024401	RFX3 (ENSSVLG00005024420)	GLIS3 (ENSSVLG00005024543)	SLC1A1 (ENSSVLG00005024569)	SPATA6L (ENSSVLG00005024615)	PLPP6 (ENSSVLG00005024689)	CDC37L1 (ENSSVLG00005024699) ##22	ENSSVLG00005024721	RCL1 (ENSSVLG00005024752)	JAK2 (ENSSVLG00005024808)	INSL6 (ENSSVLG00005024849)	ENSSVLG00005024871	PLGRKT (ENSSVLG00005024908)	CD274 (ENSSVLG00005024930)	PDCD1LG2 (ENSSVLG00005024955)	RIC1 (ENSSVLG00005025040)	ERMP1 (ENSSVLG00005025117)	MLANA (ENSSVLG00005025137)	KIAA2026 (ENSSVLG00005025155)	ENSSVLG00005025173	ENSSVLG00005025185	ENSSVLG00005025194
Hystricomorpha	ANCESTRAL SPECIES	46	ENSGT00940000154886.a.a	ENSGT00940000156489.n	ENSGT00940000160420	ENSGT00940000156282.a.a	ENSGT00940000154821.b	ENSGT00520000061590	ENSGT00940000155460	ENSGT00940000157438	ENSGT00390000015757	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00940000155397.b	ENSGT00900000143153	ENSGT00530000063821.b.b	ENSGT00940000160907	ENSGT00390000013443.d ##22	ENSGT00940000155120	ENSGT00530000063404.a.c.a	ENSGT00940000155640	ENSGT00940000154434.b	ENSGT00940000154434.a.a	ENSGT00390000000375	ENSGT00940000161430	ENSGT00390000002955	ENSGT00530000063839	ENSGT00390000009531	ENSGT00390000011483	ENSGT00940000162767	ENSGT00390000005185	ENSGT00390000008296.b.a.a	ENSGT00390000017970
Hystricomorpha_a	ANCESTRAL SPECIES	53	ENSGT00940000154886.a.a	ENSGT00940000156489.n	ENSGT00940000160420	ENSGT00940000156282.a.a	ENSGT00940000154821.b.d	ENSGT00520000061590	ENSGT00940000155460	ENSGT00940000157438	ENSGT00390000015757	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00900000143153	ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00940000160907	ENSGT00390000013443.d ##22	ENSGT00940000155120	ENSGT00530000063404.a.c.a	ENSGT00940000155640	ENSGT00940000154434.b	ENSGT00940000154434.a.a	ENSGT00390000000375	ENSGT00940000161430	ENSGT00390000002955	ENSGT00530000063839	ENSGT00390000009531	ENSGT00390000011483	ENSGT00940000162767	ENSGT00390000005185	ENSGT00390000008296.b.a.a	ENSGT00390000017970
Hystricomorpha_b	ANCESTRAL SPECIES	71	ENSGT00940000154886.a.a	ENSGT00940000156489.n	ENSGT00940000160420	ENSGT00940000156282.a.a	ENSGT00940000154821.b.d	ENSGT00520000061590	ENSGT00940000155460	ENSGT00940000157438	ENSGT00390000015757	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00940000155397.b	ENSGT00900000143153	ENSGT00530000063821.b.b	ENSGT00940000160907	ENSGT00390000013443.d ##22	ENSGT00940000155120	ENSGT00530000063404.a.c.a	ENSGT00940000155640	ENSGT00940000154434.b	ENSGT00390000000375	ENSGT00940000161430	ENSGT00390000002955	ENSGT00530000063839	ENSGT00390000009531	ENSGT00390000011483	ENSGT00940000162767	ENSGT00390000005185	ENSGT00390000008296.b.a.a	ENSGT00390000017970	ENSGT00940000154930
Degu	MODERN SPECIES	128	KANK1 (ENSODEG00000004766)	DMRT1 (ENSODEG00000004898)	DMRT3 (ENSODEG00000004984)	DMRT2 (ENSODEG00000004992)	SMARCA2 (ENSODEG00000005452)	ENSODEG00000006378	ENSODEG00000003492	KCNV2 (ENSODEG00000003536)	ENSODEG00000003625	RFX3 (ENSODEG00000003682)	GLIS3 (ENSODEG00000003731)	SLC1A1 (ENSODEG00000003884)	ENSODEG00000003949	SPATA6L (ENSODEG00000004066)	PLPP6 (ENSODEG00000019026)	CDC37L1 (ENSODEG00000004185) ##22	ENSODEG00000004121	RCL1 (ENSODEG00000004151)	JAK2 (ENSODEG00000004208)	ENSODEG00000004220	INSL6 (ENSODEG00000004231)	PLGRKT (ENSODEG00000004267)	CD274 (ENSODEG00000004298)	RIC1 (ENSODEG00000004340)	ERMP1 (ENSODEG00000005254)	MLANA (ENSODEG00000005368)	KIAA2026 (ENSODEG00000005381)	ENSODEG00000019201	RANBP6 (ENSODEG00000019173)	IL33 (ENSODEG00000005417)
Long-tailed chinchilla	MODERN SPECIES	141	KANK1 (ENSCLAG00000015509)	DMRT1 (ENSCLAG00000015238)	DMRT3 (ENSCLAG00000015537)	DMRT2 (ENSCLAG00000006168)	SMARCA2 (ENSCLAG00000014484)	VLDLR (ENSCLAG00000007543)	KCNV2 (ENSCLAG00000013226)	PUM3 (ENSCLAG00000011892)	RFX3 (ENSCLAG00000009044)	GLIS3 (ENSCLAG00000008116)	ENSCLAG00000009238	SLC1A1 (ENSCLAG00000009832)	ENSCLAG00000009476	SPATA6L (ENSCLAG00000010497)	PLPP6 (ENSCLAG00000017735)	CDC37L1 (ENSCLAG00000005805) ##22	AK3 (ENSCLAG00000006329)	RCL1 (ENSCLAG00000007445)	JAK2 (ENSCLAG00000005091)	INSL6 (ENSCLAG00000007423)	PLGRKT (ENSCLAG00000008570)	CD274 (ENSCLAG00000006370)	ENSCLAG00000007197	RIC1 (ENSCLAG00000008085)	ERMP1 (ENSCLAG00000004784)	MLANA (ENSCLAG00000005918)	KIAA2026 (ENSCLAG00000010624)	RANBP6 (ENSCLAG00000017716)	IL33 (ENSCLAG00000008507)	UHRF2 (ENSCLAG00000004646)	GLDC (ENSCLAG00000005815)
Guinea pig	MODERN SPECIES	21	DOCK8 (ENSCPOG00000008366)	KANK1 (ENSCPOG00000008389)	DMRT1 (ENSCPOG00000005909)	DMRT3 (ENSCPOG00000005912)	DMRT2 (ENSCPOG00000008452)	SMARCA2 (ENSCPOG00000005475)	VLDLR (ENSCPOG00000007685)	KCNV2 (ENSCPOG00000032893)	ENSCPOG00000008552	RFX3 (ENSCPOG00000000900)	GLIS3 (ENSCPOG00000005523)	ENSCPOG00000030794	SLC1A1 (ENSCPOG00000011151)	PLPP6 (ENSCPOG00000012931)	SPATA6L (ENSCPOG00000012925)	CDC37L1 (ENSCPOG00000030938) ##22	AK3 (ENSCPOG00000011927)	RCL1 (ENSCPOG00000015354)	JAK2 (ENSCPOG00000014653)	INSL6 (ENSCPOG00000002694)	ENSCPOG00000001365	PLGRKT (ENSCPOG00000012720)	CD274 (ENSCPOG00000004371)	RIC1 (ENSCPOG00000013425)	ERMP1 (ENSCPOG00000013432)	MLANA (ENSCPOG00000013436)	ENSCPOG00000039570	KIAA2026 (ENSCPOG00000013437)	RANBP6 (ENSCPOG00000005398)	IL33 (ENSCPOG00000030316)	UHRF2 (ENSCPOG00000004838)
Naked mole-rat female	MODERN SPECIES	3	ENSHGLG00000035043	ENSHGLG00000016566	VLDLR (ENSHGLG00000016113)	KCNV2 (ENSHGLG00000015810)	ENSHGLG00000015868	ENSHGLG00000016314	ENSHGLG00000042585	ENSHGLG00000019207	ENSHGLG00000018913	ENSHGLG00000015091	ENSHGLG00000032696	ENSHGLG00000017534	SLC1A1 (ENSHGLG00000015155)	PLPP6 (ENSHGLG00000038858)	SPATA6L (ENSHGLG00000018477)	CDC37L1 (ENSHGLG00000012329) ##22	ENSHGLG00000018975	ENSHGLG00000016452	JAK2 (ENSHGLG00000011890)	ENSHGLG00000019539	PLGRKT (ENSHGLG00000037089)	CD274 (ENSHGLG00000016786)	RIC1 (ENSHGLG00000011155)	ERMP1 (ENSHGLG00000018719)	ENSHGLG00000034164	KIAA2026 (ENSHGLG00000018909)	RANBP6 (ENSHGLG00000021232)	IL33 (ENSHGLG00000017894)	ENSHGLG00000016359	ENSHGLG00000048843	UHRF2 (ENSHGLG00000015661)
Rodentia_B	ANCESTRAL SPECIES	6	ENSGT00940000154886.a.a	ENSGT00940000156489.n	ENSGT00940000160420	ENSGT00940000156282.a.a	ENSGT00940000154821.b	ENSGT00520000061590	ENSGT00940000155460	ENSGT00940000157438	ENSGT00390000015757	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00940000155397.b	ENSGT00900000143153	ENSGT00530000063821.b.b	ENSGT00940000160907	ENSGT00390000013443.d ##22	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434.b	ENSGT00940000154434.a.a	ENSGT00390000000375	ENSGT00940000161430	ENSGT00940000161373	ENSGT00390000002955	ENSGT00530000063839	ENSGT00390000009531	ENSGT00390000011483	ENSGT00940000162767	ENSGT00390000005185	ENSGT00940000163110
Kangaroo rat	MODERN SPECIES	359	Tmem252 (ENSDORG00000005477)	Pgm5 (ENSDORG00000005476)	Cbwd1 (ENSDORG00000004917)	Dock8 (ENSDORG00000007203)	Kank1 (ENSDORG00000015159)	ENSDORG00000006363	Dmrt2 (ENSDORG00000007216)	Smarca2 (ENSDORG00000014832)	Vldlr (ENSDORG00000012954)	Kcnv2 (ENSDORG00000011511)	ENSDORG00000003628	Rfx3 (ENSDORG00000013906)	ENSDORG00000025494	Slc1a1 (ENSDORG00000010091)	Plpp6 (ENSDORG00000003071)	Cdc37l1 (ENSDORG00000023648) ##22	Ak3 (ENSDORG00000010355)	Rcl1 (ENSDORG00000015645)	Jak2 (ENSDORG00000011552)	ENSDORG00000000109	ENSDORG00000028062
Myomorpha	ANCESTRAL SPECIES	1	ENSGT00940000154886.a.a	ENSGT00940000156489.n	ENSGT00940000160420	ENSGT00940000156282.a.a	ENSGT00940000154821.b	ENSGT00520000061590	ENSGT00940000155460	ENSGT00940000157438	ENSGT00390000015757	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00940000155397.b	ENSGT00900000143153	ENSGT00530000063821.b.b	ENSGT00940000160907	ENSGT00390000013443.d ##22	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434.b	ENSGT00940000154434.a.a	ENSGT00390000000375	ENSGT00940000161430	ENSGT00940000161373	ENSGT00390000002955	ENSGT00530000063839	ENSGT00390000009531	ENSGT00390000011483	ENSGT00940000162767	ENSGT00390000005185	ENSGT00940000163110
Muroidea	ANCESTRAL SPECIES	1	ENSGT00940000154886.a.a	ENSGT00940000156489.n	ENSGT00940000160420	ENSGT00940000156282.a.a	ENSGT00940000154821.b	ENSGT00520000061590	ENSGT00940000155460	ENSGT00940000157438	ENSGT00390000015757	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00940000155397.b	ENSGT00900000143153	ENSGT00530000063821.b.b	ENSGT00940000160907	ENSGT00390000013443.d ##22	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434.b	ENSGT00940000154434.a.a	ENSGT00390000000375	ENSGT00940000161430	ENSGT00940000161373	ENSGT00390000002955	ENSGT00530000063839	ENSGT00390000009531	ENSGT00390000011483	ENSGT00940000162767	ENSGT00390000005185	ENSGT00940000163110
Muroidea_A	ANCESTRAL SPECIES		ENSGT00940000154886.a.a	ENSGT00940000156489.n	ENSGT00940000160420	ENSGT00940000156282.a.a	ENSGT00940000154821.b	ENSGT00520000061590	ENSGT00940000155460	ENSGT00940000157438	ENSGT00390000015757	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00940000155397.b	ENSGT00900000143153	ENSGT00530000063821.b.b	ENSGT00940000160907	ENSGT00390000013443.d ##22	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434.b	ENSGT00940000154434.a.a	ENSGT00390000000375	ENSGT00940000161430	ENSGT00940000161373	ENSGT00390000002955	ENSGT00530000063839	ENSGT00390000009531	ENSGT00390000011483	ENSGT00940000162767	ENSGT00390000005185	ENSGT00940000163110
Cricetidae	ANCESTRAL SPECIES	1	ENSGT00940000154886.a.a	ENSGT00940000156489.n	ENSGT00940000160420	ENSGT00940000156282.a.a	ENSGT00940000154821.b	ENSGT00520000061590	ENSGT00940000155460	ENSGT00940000157438	ENSGT00390000015757	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00940000155397.b	ENSGT00900000143153	ENSGT00530000063821.b.b	ENSGT00940000160907	ENSGT00390000013443.d ##22	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434.b	ENSGT00940000154434.a.a	ENSGT00390000000375	ENSGT00940000161430	ENSGT00940000161373	ENSGT00390000002955	ENSGT00530000063839	ENSGT00390000009531	ENSGT00390000011483	ENSGT00940000162767	ENSGT00390000005185	ENSGT00940000163110
Cricetidae_B	ANCESTRAL SPECIES	1	ENSGT00940000154886.a.a	ENSGT00940000156489.n	ENSGT00940000160420	ENSGT00940000156282.a.a	ENSGT00940000154821.b	ENSGT00520000061590	ENSGT00940000155460	ENSGT00940000157438	ENSGT00390000015757	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00940000155397.b	ENSGT00900000143153	ENSGT00530000063821.b.b	ENSGT00940000160907	ENSGT00390000013443.d ##22	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434.b	ENSGT00940000154434.a.a	ENSGT00390000000375	ENSGT00940000161430	ENSGT00940000161373	ENSGT00390000002955	ENSGT00530000063839	ENSGT00390000009531	ENSGT00390000011483	ENSGT00940000162767	ENSGT00390000005185	ENSGT00940000163110
Northern American deer mouse	MODERN SPECIES		Dmrt3 (ENSPEMG00000019990)	Dmrt2 (ENSPEMG00000019767)	Smarca2 (ENSPEMG00000019821)	ENSPEMG00000021666	Vldlr (ENSPEMG00000022250)	Kcnv2 (ENSPEMG00000020138)	ENSPEMG00000030423	ENSPEMG00000019340	Rfx3 (ENSPEMG00000019731)	Glis3 (ENSPEMG00000020002)	ENSPEMG00000004286	Slc1a1 (ENSPEMG00000009611)	ENSPEMG00000021571	Spata6l (ENSPEMG00000023122)	Plpp6 (ENSPEMG00000007181)	Cdc37l1 (ENSPEMG00000000344) ##22	Ak3 (ENSPEMG00000022781)	Rcl1 (ENSPEMG00000023275)	Jak2 (ENSPEMG00000022083)	ENSPEMG00000023396	Rln1 (ENSPEMG00000022594)	Plgrkt (ENSPEMG00000022507)	Cd274 (ENSPEMG00000022427)	Pdcd1lg2 (ENSPEMG00000021972)	Ric1 (ENSPEMG00000022073)	Ermp1 (ENSPEMG00000022988)	Mlana (ENSPEMG00000004309)	9930021J03Rik (ENSPEMG00000008620)	Ranbp6 (ENSPEMG00000013745)	Il33 (ENSPEMG00000010337)	ENSPEMG00000013576
Prairie vole	MODERN SPECIES	16	Dock8 (ENSMOCG00000014249)	Kank1 (ENSMOCG00000020725)	ENSMOCG00000017971	Dmrt3 (ENSMOCG00000015270)	Dmrt2 (ENSMOCG00000016701)	Smarca2 (ENSMOCG00000001611)	Vldlr (ENSMOCG00000004269)	Kcnv2 (ENSMOCG00000014872)	ENSMOCG00000019519	Rfx3 (ENSMOCG00000018931)	Glis3 (ENSMOCG00000009953)	Slc1a1 (ENSMOCG00000017507)	ENSMOCG00000018225	Spata6l (ENSMOCG00000022082)	Plpp6 (ENSMOCG00000001135)	Cdc37l1 (ENSMOCG00000018341) ##22	Ak3 (ENSMOCG00000010856)	Rcl1 (ENSMOCG00000012145)	Jak2 (ENSMOCG00000013580)	Insl6 (ENSMOCG00000015208)	Rln1 (ENSMOCG00000012108)	Plgrkt (ENSMOCG00000013870)	Cd274 (ENSMOCG00000016738)	Pdcd1lg2 (ENSMOCG00000002927)	Ric1 (ENSMOCG00000018339)	ENSMOCG00000019292	Mlana (ENSMOCG00000005161)	9930021J03Rik (ENSMOCG00000020946)	Ranbp6 (ENSMOCG00000010374)	Il33 (ENSMOCG00000012740)	Uhrf2 (ENSMOCG00000000695)
Cricetinae	ANCESTRAL SPECIES	2	ENSGT00940000154886.a.a	ENSGT00940000156489.n	ENSGT00940000160420	ENSGT00940000156282.a.a	ENSGT00940000154821.b	ENSGT00520000061590	ENSGT00940000155460	ENSGT00940000157438	ENSGT00390000015757	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00940000155397.b	ENSGT00900000143153	ENSGT00530000063821.b.b	ENSGT00940000160907	ENSGT00390000013443.d ##22	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434.b	ENSGT00940000154434.a.a	ENSGT00390000000375	ENSGT00940000161430	ENSGT00940000161373	ENSGT00390000002955	ENSGT00530000063839	ENSGT00390000009531	ENSGT00390000011483	ENSGT00940000162767	ENSGT00390000005185	ENSGT00940000163110
Chinese hamster chok1gshd	MODERN SPECIES	401	Kank1 (ENSCGRG00001020355)	Dmrt1 (ENSCGRG00001000625)	Dmrt3 (ENSCGRG00001005036)	Dmrt2 (ENSCGRG00001007562)	Smarca2 (ENSCGRG00001002323)	Vldlr (ENSCGRG00001014399)	ENSCGRG00001017895	Kcnv2 (ENSCGRG00001018140)	Pum3 (ENSCGRG00001016402)	Rfx3 (ENSCGRG00001021745)	Glis3 (ENSCGRG00001014233)	Slc1a1 (ENSCGRG00001022336)	ENSCGRG00001023585	Spata6l (ENSCGRG00001002881)	Plpp6 (ENSCGRG00001012981)	Cdc37l1 (ENSCGRG00001000264) ##22	AK3 (ENSCGRG00001007296)	Rcl1 (ENSCGRG00001013748)	Jak2 (ENSCGRG00001015840)	Insl6 (ENSCGRG00001020673)	Plgrkt (ENSCGRG00001023695)	Cd274 (ENSCGRG00001024294)	ENSCGRG00001013276	Pdcd1lg2 (ENSCGRG00001015183)	Ric1 (ENSCGRG00001016728)	Ermp1 (ENSCGRG00001021468)	Mlana (ENSCGRG00001024579)	9930021J03Rik (ENSCGRG00001008137)	Ranbp6 (ENSCGRG00001012447)	Il33 (ENSCGRG00001014000)	Trpd52l3 (ENSCGRG00001011832)
Golden Hamster	MODERN SPECIES	617	ENSMAUG00000009191	Kank1 (ENSMAUG00000009263)	ENSMAUG00000008975	Dmrt3 (ENSMAUG00000008904)	Dmrt2 (ENSMAUG00000010038)	ENSMAUG00000010070	ENSMAUG00000008807	ENSMAUG00000008613	ENSMAUG00000008768	Kcnv2 (ENSMAUG00000008727)	Pum3 (ENSMAUG00000009733)	Rfx3 (ENSMAUG00000009987)	Slc1a1 (ENSMAUG00000009046)	Plpp6 (ENSMAUG00000001915)	Spata6l (ENSMAUG00000010530)	Cdc37l1 (ENSMAUG00000008847) ##22	Ak3 (ENSMAUG00000008253)	Rcl1 (ENSMAUG00000008922)	Jak2 (ENSMAUG00000008571)	Insl6 (ENSMAUG00000008553)	Rln1 (ENSMAUG00000008598)	Plgrkt (ENSMAUG00000007601)	Cd274 (ENSMAUG00000008788)	Pdcd1lg2 (ENSMAUG00000007055)	Ric1 (ENSMAUG00000008752)	Ermp1 (ENSMAUG00000008682)	Mlana (ENSMAUG00000006750)	9930021J03Rik (ENSMAUG00000009640)	Ranbp6 (ENSMAUG00000002166)	ENSMAUG00000010025	Uhrf2 (ENSMAUG00000008237)
Murinae	ANCESTRAL SPECIES		ENSGT00940000154886.a.a	ENSGT00940000156489.n	ENSGT00940000160420	ENSGT00940000156282.a.a	ENSGT00940000154821.b	ENSGT00520000061590	ENSGT00940000155460	ENSGT00940000157438	ENSGT00390000015757	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00940000155397.b	ENSGT00900000143153	ENSGT00530000063821.b.b	ENSGT00940000160907	ENSGT00390000013443.d ##22	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434.b	ENSGT00940000154434.a.a	ENSGT00390000000375	ENSGT00940000161430	ENSGT00940000161373	ENSGT00390000002955	ENSGT00530000063839	ENSGT00390000009531	ENSGT00390000011483	ENSGT00940000162767	ENSGT00390000005185	ENSGT00940000163110
Mus	ANCESTRAL SPECIES		ENSGT00940000156489.n	ENSGT00940000160420	ENSGT00940000156282.a.a	ENSGT00940000154821.b	ENSGT00900000143396	ENSGT00940000155460	ENSGT00520000061590	ENSGT00940000157438	ENSGT00390000015757	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00940000155397.b	ENSGT00900000143153	ENSGT00530000063821.b.b	ENSGT00940000160907	ENSGT00390000013443.d ##22	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434.b	ENSGT00940000154434.a.a	ENSGT00390000000375	ENSGT00940000161430	ENSGT00940000161373	ENSGT00390000002955	ENSGT00530000063839	ENSGT00390000009531	ENSGT00390000011483	ENSGT00940000162767	ENSGT00390000005185	ENSGT00940000163110
Mus_A	ANCESTRAL SPECIES	16	ENSGT00940000156489.n	ENSGT00940000160420	ENSGT00940000156282.a.a	ENSGT00940000154821.b	ENSGT00900000143396	ENSGT00940000155460	ENSGT00520000061590	ENSGT00940000157438	ENSGT00390000015757	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00940000155397.b	ENSGT00900000143153	ENSGT00530000063821.b.b	ENSGT00940000160907	ENSGT00390000013443.d ##22	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434.b	ENSGT00940000154434.a.a	ENSGT00390000000375	ENSGT00940000161430	ENSGT00940000161373	ENSGT00390000002955	ENSGT00530000063839	ENSGT00390000009531	ENSGT00390000011483	ENSGT00940000162767	ENSGT00390000005185	ENSGT00940000163110
Mus_B	ANCESTRAL SPECIES	16	ENSGT00940000156489.n	ENSGT00940000160420	ENSGT00940000156282.a.a	ENSGT00940000154821.b	ENSGT00900000143396	ENSGT00940000155460	ENSGT00520000061590	ENSGT00940000157438	ENSGT00390000015757	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00940000155397.b	ENSGT00900000143153	ENSGT00530000063821.b.b	ENSGT00940000160907	ENSGT00390000013443.d ##22	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434.b	ENSGT00940000154434.a.a	ENSGT00390000000375	ENSGT00940000161430	ENSGT00940000161373	ENSGT00390000002955	ENSGT00530000063839	ENSGT00390000009531	ENSGT00390000011483	ENSGT00940000162767	ENSGT00390000005185	ENSGT00940000163110
Mus_C	ANCESTRAL SPECIES	24	ENSGT00940000156489.n	ENSGT00940000160420	ENSGT00940000156282.a.a	ENSGT00940000154821.b	ENSGT00900000143396	ENSGT00940000155460	ENSGT00520000061590	ENSGT00940000157438	ENSGT00390000015757	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00940000155397.b	ENSGT00900000143153	ENSGT00530000063821.b.b	ENSGT00940000160907	ENSGT00390000013443.d ##22	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434.b	ENSGT00940000154434.a.a	ENSGT00390000000375	ENSGT00940000161430	ENSGT00940000161373	ENSGT00390000002955	ENSGT00530000063839	ENSGT00390000009531	ENSGT00390000011483	ENSGT00940000162767	ENSGT00390000005185	ENSGT00940000163110
Steppe mouse	MODERN SPECIES	3342												Slc1a1 (ENSMSIG00000024962)	ENSMSIG00000024973	Spata6l (ENSMSIG00000024987)	Plpp6 (ENSMSIG00000025080)	Cdc37l1 (ENSMSIG00000025086) ##22	ENSMSIG00000025242	Ak3 (ENSMSIG00000025266)	Rcl1 (ENSMSIG00000025273)	Jak2 (ENSMSIG00000025287)	Insl6 (ENSMSIG00000025305)	Rln1 (ENSMSIG00000025309)	Plgrkt (ENSMSIG00000025313)	Cd274 (ENSMSIG00000025326)	Pdcd1lg2 (ENSMSIG00000025335)	Ric1 (ENSMSIG00000025350)	Ermp1 (ENSMSIG00000025448)	Mlana (ENSMSIG00000025512)	9930021J03Rik (ENSMSIG00000025540)	Ranbp6 (ENSMSIG00000025595)	Il33 (ENSMSIG00000025601)
spretus	MODERN SPECIES	10	Cbwd1 (MGP_SPRETEiJ_G0023754)	Dock8 (MGP_SPRETEiJ_G0023755)	Kank1 (MGP_SPRETEiJ_G0023756)	Dmrt3 (MGP_SPRETEiJ_G0023757)	Dmrt2 (MGP_SPRETEiJ_G0023758)	Smarca2 (MGP_SPRETEiJ_G0023759)	MGP_SPRETEiJ_G0023760	Vldlr (MGP_SPRETEiJ_G0023761)	Kcnv2 (MGP_SPRETEiJ_G0023762)	Pum3 (MGP_SPRETEiJ_G0023763)	Rfx3 (MGP_SPRETEiJ_G0023764)	Glis3 (MGP_SPRETEiJ_G0023765)	Slc1a1 (MGP_SPRETEiJ_G0023766)	Spata6l (MGP_SPRETEiJ_G0023767)	Plpp6 (MGP_SPRETEiJ_G0023768)	Cdc37l1 (MGP_SPRETEiJ_G0023769) ##22	Ak3 (MGP_SPRETEiJ_G0023770)	Rcl1 (MGP_SPRETEiJ_G0023771)	Jak2 (MGP_SPRETEiJ_G0023772)	Insl6 (MGP_SPRETEiJ_G0023773)	Rln1 (MGP_SPRETEiJ_G0023774)	Plgrkt (MGP_SPRETEiJ_G0023775)	Cd274 (MGP_SPRETEiJ_G0023776)	Pdcd1lg2 (MGP_SPRETEiJ_G0023777)	Ric1 (MGP_SPRETEiJ_G0023778)	Ermp1 (MGP_SPRETEiJ_G0023779)	Mlana (MGP_SPRETEiJ_G0023780)	9930021J03Rik (MGP_SPRETEiJ_G0023781)	Ranbp6 (MGP_SPRETEiJ_G0023782)	Il33 (MGP_SPRETEiJ_G0023783)	Trpd52l3 (MGP_SPRETEiJ_G0023784)
Mouse	MODERN SPECIES	10	Dock8 (ENSMUSG00000052085)	Kank1 (ENSMUSG00000032702)	Dmrt1 (ENSMUSG00000024837)	Dmrt3 (ENSMUSG00000042372)	Dmrt2 (ENSMUSG00000048138)	Smarca2 (ENSMUSG00000024921)	Gm815 (ENSMUSG00000074913)	Vldlr (ENSMUSG00000024924)	Kcnv2 (ENSMUSG00000047298)	Pum3 (ENSMUSG00000041360)	Rfx3 (ENSMUSG00000040929)	Glis3 (ENSMUSG00000052942)	Slc1a1 (ENSMUSG00000024935)	Spata6l (ENSMUSG00000064202)	Plpp6 (ENSMUSG00000040105)	Cdc37l1 (ENSMUSG00000024780) ##22	Ak3 (ENSMUSG00000024782)	Rcl1 (ENSMUSG00000024785)	Jak2 (ENSMUSG00000024789)	Insl6 (ENSMUSG00000050957)	Rln1 (ENSMUSG00000039097)	Plgrkt (ENSMUSG00000016495)	Cd274 (ENSMUSG00000016496)	Pdcd1lg2 (ENSMUSG00000016498)	Ric1 (ENSMUSG00000038658)	Ermp1 (ENSMUSG00000046324)	Mlana (ENSMUSG00000024806)	9930021J03Rik (ENSMUSG00000046138)	Ranbp6 (ENSMUSG00000074909)	Il33 (ENSMUSG00000024810)	Trpd52l3 (ENSMUSG00000024815)
Ryukyu mouse	MODERN SPECIES	10	Dock8 (MGP_CAROLIEiJ_G0022836)	Kank1 (MGP_CAROLIEiJ_G0022837)	Dmrt1 (MGP_CAROLIEiJ_G0022838)	Dmrt3 (MGP_CAROLIEiJ_G0022839)	Dmrt2 (MGP_CAROLIEiJ_G0022840)	Smarca2 (MGP_CAROLIEiJ_G0022841)	MGP_CAROLIEiJ_G0022842	Vldlr (MGP_CAROLIEiJ_G0022843)	Kcnv2 (MGP_CAROLIEiJ_G0022844)	Pum3 (MGP_CAROLIEiJ_G0022845)	Rfx3 (MGP_CAROLIEiJ_G0022846)	Glis3 (MGP_CAROLIEiJ_G0022847)	Slc1a1 (MGP_CAROLIEiJ_G0022848)	Spata6l (MGP_CAROLIEiJ_G0022849)	Plpp6 (MGP_CAROLIEiJ_G0022850)	Cdc37l1 (MGP_CAROLIEiJ_G0022851) ##22	Ak3 (MGP_CAROLIEiJ_G0022852)	Rcl1 (MGP_CAROLIEiJ_G0022853)	Jak2 (MGP_CAROLIEiJ_G0022854)	Insl6 (MGP_CAROLIEiJ_G0022855)	Rln1 (MGP_CAROLIEiJ_G0022856)	Plgrkt (MGP_CAROLIEiJ_G0022857)	Cd274 (MGP_CAROLIEiJ_G0022858)	Pdcd1lg2 (MGP_CAROLIEiJ_G0022859)	Ric1 (MGP_CAROLIEiJ_G0022860)	Ermp1 (MGP_CAROLIEiJ_G0022861)	Mlana (MGP_CAROLIEiJ_G0022862)	9930021J03Rik (MGP_CAROLIEiJ_G0022863)	Ranbp6 (MGP_CAROLIEiJ_G0022864)	Il33 (MGP_CAROLIEiJ_G0022865)	Trpd52l3 (MGP_CAROLIEiJ_G0022866)
Shrew mouse	MODERN SPECIES		Dock8 (MGP_PahariEiJ_G0014329)	Kank1 (MGP_PahariEiJ_G0014330)	Dmrt1 (MGP_PahariEiJ_G0014331)	Dmrt3 (MGP_PahariEiJ_G0014332)	Dmrt2 (MGP_PahariEiJ_G0014333)	Smarca2 (MGP_PahariEiJ_G0014334)	MGP_PahariEiJ_G0014335	Vldlr (MGP_PahariEiJ_G0014336)	Kcnv2 (MGP_PahariEiJ_G0014337)	Pum3 (MGP_PahariEiJ_G0014338)	Rfx3 (MGP_PahariEiJ_G0014339)	Glis3 (MGP_PahariEiJ_G0014340)	Slc1a1 (MGP_PahariEiJ_G0014341)	Spata6l (MGP_PahariEiJ_G0014342)	Plpp6 (MGP_PahariEiJ_G0014343)	Cdc37l1 (MGP_PahariEiJ_G0014344) ##22	Ak3 (MGP_PahariEiJ_G0014345)	Rcl1 (MGP_PahariEiJ_G0014346)	Jak2 (MGP_PahariEiJ_G0014347)	Insl6 (MGP_PahariEiJ_G0014348)	Rln1 (MGP_PahariEiJ_G0014349)	MGP_PahariEiJ_G0014350	Cd274 (MGP_PahariEiJ_G0014351)	Pdcd1lg2 (MGP_PahariEiJ_G0014352)	Ric1 (MGP_PahariEiJ_G0014353)	Ermp1 (MGP_PahariEiJ_G0014354)	Mlana (MGP_PahariEiJ_G0014355)	9930021J03Rik (MGP_PahariEiJ_G0014356)	Ranbp6 (MGP_PahariEiJ_G0014357)	Il33 (MGP_PahariEiJ_G0014358)	Trpd52l3 (MGP_PahariEiJ_G0014359)
Rat	MODERN SPECIES		ENSRNOG00000062555	Smarca2 (ENSRNOG00000011931)	ENSRNOG00000069446	Vldlr (ENSRNOG00000027491)	ENSRNOG00000062591	Kcnv2 (ENSRNOG00000012566)	Pum3 (ENSRNOG00000012574)	Rfx3 (ENSRNOG00000014486)	ENSRNOG00000066761	Glis3 (ENSRNOG00000014768)	Slc1a1 (ENSRNOG00000014816)	ENSRNOG00000065811	Spata6l (ENSRNOG00000015137)	Plpp6 (ENSRNOG00000015268)	RGD1565057 (ENSRNOG00000069618)	Cdc37l1 (ENSRNOG00000010967) ##22	Ak3 (ENSRNOG00000052506)	Rcl1 (ENSRNOG00000015491)	Jak2 (ENSRNOG00000059968)	Insl6 (ENSRNOG00000015868)	Rln1 (ENSRNOG00000060867)	Plgrkt (ENSRNOG00000015932)	Cd274 (ENSRNOG00000016112)	Pdcd1lg2 (ENSRNOG00000016136)	Ric1 (ENSRNOG00000016172)	Ermp1 (ENSRNOG00000010915)	Mlana (ENSRNOG00000036608)	RGD1311595 (ENSRNOG00000026942)	Ranbp6 (ENSRNOG00000053859)	Il33 (ENSRNOG00000016456)	Tpd52l3 (ENSRNOG00000042441)
Upper Galilee mountains blind mole rat	MODERN SPECIES	1166	Dmrt1 (ENSNGAG00000001295)	Dmrt3 (ENSNGAG00000020423)	Dmrt2 (ENSNGAG00000020041)	ENSNGAG00000013866	Smarca2 (ENSNGAG00000000108)	ENSNGAG00000012912	Vldlr (ENSNGAG00000003966)	Kcnv2 (ENSNGAG00000020439)	Pum3 (ENSNGAG00000019468)	Rfx3 (ENSNGAG00000016470)	Glis3 (ENSNGAG00000006111)	ENSNGAG00000018137	Slc1a1 (ENSNGAG00000014723)	Plpp6 (ENSNGAG00000014756)	Spata6l (ENSNGAG00000017948)	Cdc37l1 (ENSNGAG00000018155) ##22	Ak3 (ENSNGAG00000016647)	Rcl1 (ENSNGAG00000015327)	Jak2 (ENSNGAG00000000096)
Lesser Egyptian jerboa	MODERN SPECIES	50	Dmrt2 (ENSJJAG00000023959)	ENSJJAG00000010719	Smarca2 (ENSJJAG00000010867)	Vldlr (ENSJJAG00000016440)	ENSJJAG00000000409	Kcnv2 (ENSJJAG00000016782)	Pum3 (ENSJJAG00000012563)	ENSJJAG00000010263	Rfx3 (ENSJJAG00000010280)	ENSJJAG00000024335	Glis3 (ENSJJAG00000011399)	Slc1a1 (ENSJJAG00000018507)	ENSJJAG00000020462	Spata6l (ENSJJAG00000022941)	Plpp6 (ENSJJAG00000011277)	Cdc37l1 (ENSJJAG00000024330) ##22	Ak3 (ENSJJAG00000023388)	ENSJJAG00000022803	Jak2 (ENSJJAG00000012271)	Rln1 (ENSJJAG00000013838)	Plgrkt (ENSJJAG00000010846)	Ric1 (ENSJJAG00000014841)	Ermp1 (ENSJJAG00000021848)	Mlana (ENSJJAG00000022272)	9930021J03Rik (ENSJJAG00000016877)	Ranbp6 (ENSJJAG00000010492)	ENSJJAG00000006290	Uhrf2 (ENSJJAG00000023371)	Gldc (ENSJJAG00000023082)	Dkk1 (ENSJJAG00000002379)	Prkg1 (ENSJJAG00000015715)
Laurasiatheria	ANCESTRAL SPECIES	9	ENSGT00940000156489	ENSGT00940000160420	ENSGT00940000156282.a.a	ENSGT00940000154821.b	ENSGT00520000061590	ENSGT00940000155460	ENSGT00940000157438	ENSGT00390000015757	ENSGT00940000164013	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00950000186013	ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00940000160907	ENSGT00390000013443.d ##22	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434.b	ENSGT00940000154434.a	ENSGT00390000000375	ENSGT00940000161430	ENSGT00940000161373	ENSGT00390000002955	ENSGT00530000063839	ENSGT00390000009531	ENSGT00390000011483	ENSGT00940000162767	ENSGT00390000005185	ENSGT00940000163110
Eulipotyphla	ANCESTRAL SPECIES	775															ENSGT00530000063821.b.b	ENSGT00390000013443.d ##22	ENSGT00940000155120
Hedgehog	MODERN SPECIES	1028																CDC37L1 (ENSEEUG00000010138) ##22
Common shrew	MODERN SPECIES	598															SPATA6L (ENSSARG00000004566)	CDC37L1 (ENSSARG00000004588) ##22	AK3 (ENSSARG00000004598)
Laurasiatheria_a	ANCESTRAL SPECIES	11	ENSGT00940000156489	ENSGT00940000160420	ENSGT00940000156282.a.a	ENSGT00940000154821.b	ENSGT00520000061590	ENSGT00940000155460	ENSGT00940000157438	ENSGT00390000015757	ENSGT00940000164013	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00950000186013	ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00940000160907	ENSGT00390000013443.d ##22	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434.b	ENSGT00940000154434.a	ENSGT00390000000375	ENSGT00940000161430	ENSGT00940000161373	ENSGT00390000002955	ENSGT00530000063839	ENSGT00390000009531	ENSGT00390000011483	ENSGT00940000162767	ENSGT00390000005185	ENSGT00940000163110
Artiodactyla	ANCESTRAL SPECIES	7	ENSGT00940000156489	ENSGT00940000160420	ENSGT00940000156282.a.a	ENSGT00940000154821.b	ENSGT00520000061590	ENSGT00940000155460	ENSGT00940000157438	ENSGT00390000015757	ENSGT00940000164013	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00950000186013	ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00940000160907	ENSGT00390000013443.d ##22	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434.b	ENSGT00940000154434.a	ENSGT00390000000375	ENSGT00940000161430	ENSGT00940000161373	ENSGT00390000002955	ENSGT00530000063839	ENSGT00390000009531	ENSGT00390000011483	ENSGT00940000162767	ENSGT00390000005185	ENSGT00940000163110
Suina	ANCESTRAL SPECIES	23	ENSGT00940000154886.a.a	ENSGT00940000156489	ENSGT00940000160420	ENSGT00940000156282.a.a	ENSGT00940000154821.b	ENSGT00940000155460	ENSGT00520000061590	ENSGT00940000157438	ENSGT00390000015757	ENSGT00940000164013	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00940000160907	ENSGT00390000013443.d ##22	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434.b	ENSGT00940000154434.a	ENSGT00390000000375	ENSGT00940000161430	ENSGT00940000161373	ENSGT00390000002955	ENSGT00530000063839	ENSGT00390000009531	ENSGT00390000011483	ENSGT00940000162767	ENSGT00390000005185	ENSGT00940000163110
Chacoan peccary	MODERN SPECIES	20	DMRT1 (ENSCWAG00000020382)	DMRT3 (ENSCWAG00000020400)	DMRT2 (ENSCWAG00000020422)	ENSCWAG00000020471	SMARCA2 (ENSCWAG00000020512)	VLDLR (ENSCWAG00000020653)	ENSCWAG00000020684	KCNV2 (ENSCWAG00000020693)	PUM3 (ENSCWAG00000020700)	RFX3 (ENSCWAG00000020726)	ENSCWAG00000020759	GLIS3 (ENSCWAG00000020767)	SLC1A1 (ENSCWAG00000020776)	SPATA6L (ENSCWAG00000020801)	PLPP6 (ENSCWAG00000020823)	CDC37L1 (ENSCWAG00000020832) ##22	AK3 (ENSCWAG00000020856)	RCL1 (ENSCWAG00000020883)	ENSCWAG00000020913	ENSCWAG00000020920	JAK2 (ENSCWAG00000020930)	INSL6 (ENSCWAG00000020954)	ENSCWAG00000020963	PLGRKT (ENSCWAG00000021002)	CD274 (ENSCWAG00000021014)	PDCD1LG2 (ENSCWAG00000021026)	ENSCWAG00000021040	RIC1 (ENSCWAG00000021078)	ERMP1 (ENSCWAG00000021102)	MLANA (ENSCWAG00000021120)	KIAA2026 (ENSCWAG00000021140)
Pig	MODERN SPECIES		ENSSSCG00000032324	ENSSSCG00000057314	ENSSSCG00000005232	ENSSSCG00000041522	ENSSSCG00000052990	ENSSSCG00000040670	VLDLR (ENSSSCG00000005229)	KCNV2 (ENSSSCG00000005228)	PUM3 (ENSSSCG00000005227)	ENSSSCG00000039823	RFX3 (ENSSSCG00000005225)	GLIS3 (ENSSSCG00000005224)	SLC1A1 (ENSSSCG00000005222)	PLPP6 (ENSSSCG00000005220)	SPATA6L (ENSSSCG00000005221)	CDC37L1 (ENSSSCG00000005219) ##22	AK3 (ENSSSCG00000023595)	ENSSSCG00000058562	ENSSSCG00000005217	ENSSSCG00000052472	JAK2 (ENSSSCG00000005215)	INSL6 (ENSSSCG00000005214)	ENSSSCG00000005216	PLGRKT (ENSSSCG00000005212)	CD274 (ENSSSCG00000005211)	PDCD1LG2 (ENSSSCG00000032561)	ENSSSCG00000005209	RIC1 (ENSSSCG00000005208)	ERMP1 (ENSSSCG00000005207)	MLANA (ENSSSCG00000005206)	KIAA2026 (ENSSSCG00000005205)
Artiodactyla_a	ANCESTRAL SPECIES	6	ENSGT00940000156489	ENSGT00940000160420	ENSGT00940000156282.a.a	ENSGT00940000154821.b	ENSGT00520000061590	ENSGT00940000155460	ENSGT00940000157438	ENSGT00390000015757	ENSGT00940000164013	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00950000186013	ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00940000160907	ENSGT00390000013443.d ##22	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434.b	ENSGT00940000154434.a	ENSGT00390000000375	ENSGT00940000161430	ENSGT00940000161373	ENSGT00390000002955	ENSGT00530000063839	ENSGT00390000009531	ENSGT00390000011483	ENSGT00940000162767	ENSGT00390000005185	ENSGT00940000163110
Camelidae	ANCESTRAL SPECIES	5	ENSGT00940000155876	ENSGT00940000154886.a.a	ENSGT00940000156489	ENSGT00940000160420	ENSGT00940000156282.a.a	ENSGT00940000154821.b	ENSGT00940000155460	ENSGT00940000157438	ENSGT00390000015757	ENSGT00940000164013	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00940000160907	ENSGT00390000013443.d ##22	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434.b	ENSGT00940000154434.a.f	ENSGT00940000154434.a.e	ENSGT00390000000375	ENSGT00940000161430	ENSGT00940000161373	ENSGT00390000002955	ENSGT00530000063839	ENSGT00390000009531	ENSGT00390000011483	ENSGT00940000167431	ENSGT00390000005185
Arabian camel	MODERN SPECIES	30	DOCK8 (ENSCDRG00005003115)	KANK1 (ENSCDRG00005003188)	DMRT1 (ENSCDRG00005003226)	DMRT3 (ENSCDRG00005003237)	DMRT2 (ENSCDRG00005003248)	ENSCDRG00005003352	VLDLR (ENSCDRG00005003699)	KCNV2 (ENSCDRG00005003822)	PUM3 (ENSCDRG00005003846)	ENSCDRG00005003916	RFX3 (ENSCDRG00005004007)	GLIS3 (ENSCDRG00005004109)	SLC1A1 (ENSCDRG00005004192)	SPATA6L (ENSCDRG00005004284)	PLPP6 (ENSCDRG00005004350)	CDC37L1 (ENSCDRG00005004358) ##22	AK3 (ENSCDRG00005004398)	RCL1 (ENSCDRG00005004458)	JAK2 (ENSCDRG00005004520)	INSL6 (ENSCDRG00005004548)	ENSCDRG00005004570	PLGRKT (ENSCDRG00005004613)	ENSCDRG00005004708	CD274 (ENSCDRG00005004734)	PDCD1LG2 (ENSCDRG00005004849)	RIC1 (ENSCDRG00005004883)	ERMP1 (ENSCDRG00005005148)	MLANA (ENSCDRG00005005180)	KIAA2026 (ENSCDRG00005005203)	ENSCDRG00005005267	IL33 (ENSCDRG00005005282)
Alpaca	MODERN SPECIES	3435														SLC1A1 (ENSVPAG00000009183)	SPATA6L (ENSVPAG00000009184)	CDC37L1 (ENSVPAG00000009186) ##22	AK3 (ENSVPAG00000009187)	RCL1 (ENSVPAG00000009188)	JAK2 (ENSVPAG00000009189)	INSL6 (ENSVPAG00000009194)
Artiodactyla_b	ANCESTRAL SPECIES	7	ENSGT00940000156489	ENSGT00940000160420	ENSGT00940000156282.a.a	ENSGT00940000154821.b	ENSGT00520000061590	ENSGT00940000155460	ENSGT00940000157438	ENSGT00390000015757	ENSGT00940000164013	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00950000186013	ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00940000160907	ENSGT00390000013443.d ##22	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434.b	ENSGT00940000154434.a	ENSGT00390000000375	ENSGT00940000161430	ENSGT00940000161373	ENSGT00390000002955	ENSGT00530000063839	ENSGT00390000009531	ENSGT00390000011483	ENSGT00940000162767	ENSGT00390000005185	ENSGT00940000163110
Pecora	ANCESTRAL SPECIES	30	ENSGT00940000156489	ENSGT00940000160420	ENSGT00940000156282.a.a	ENSGT00940000154821.b	ENSGT00520000061590	ENSGT00940000155460	ENSGT00940000157438	ENSGT00390000015757	ENSGT00940000164013	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00660000097148	ENSGT00940000155397.b	ENSGT00940000160907	ENSGT00530000063821.b.b	ENSGT00390000013443.d ##22	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434.b	ENSGT00390000000375	ENSGT00940000161430	ENSGT00940000161373	ENSGT00390000002955	ENSGT00530000063839	ENSGT00390000009531	ENSGT00390000011483	ENSGT00940000167431	ENSGT00390000005185	ENSGT00940000163110	ENSGT00390000008296.b.a.a
Yarkand deer	MODERN SPECIES	21	KANK1 (ENSCHYG00000014368)	ENSCHYG00000014288	DMRT1 (ENSCHYG00000014189)	DMRT3 (ENSCHYG00000026880)	DMRT2 (ENSCHYG00000026873)	SMARCA2 (ENSCHYG00000026820)	ENSCHYG00000026782	VLDLR (ENSCHYG00000026763)	KCNV2 (ENSCHYG00000026745)	PUM3 (ENSCHYG00000026723)	RFX3 (ENSCHYG00000026695)	GLIS3 (ENSCHYG00000026667)	SLC1A1 (ENSCHYG00000026638)	PLPP6 (ENSCHYG00000026621)	SPATA6L (ENSCHYG00000026599)	CDC37L1 (ENSCHYG00000026576) ##22	AK3 (ENSCHYG00000026564)	RCL1 (ENSCHYG00000026548)	JAK2 (ENSCHYG00000026521)	INSL6 (ENSCHYG00000026514)	PLGRKT (ENSCHYG00000026504)	CD274 (ENSCHYG00000026492)	PDCD1LG2 (ENSCHYG00000026474)	RIC1 (ENSCHYG00000026365)	ERMP1 (ENSCHYG00000026281)	MLANA (ENSCHYG00000026247)	KIAA2026 (ENSCHYG00000026213)	ENSCHYG00000026199	IL33 (ENSCHYG00000026175)	ENSCHYG00000026163	UHRF2 (ENSCHYG00000026053)
Percora_a	ANCESTRAL SPECIES	24	ENSGT00940000156489	ENSGT00940000160420	ENSGT00940000156282.a.a	ENSGT00940000154821.b	ENSGT00520000061590	ENSGT00940000155460	ENSGT00940000157438	ENSGT00390000015757	ENSGT00940000164013	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00660000097148	ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00940000160907	ENSGT00390000013443.d ##22	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434.b	ENSGT00390000000375	ENSGT00940000161430	ENSGT00940000161373	ENSGT00390000002955	ENSGT00530000063839	ENSGT00390000009531	ENSGT00390000011483	ENSGT00940000167431	ENSGT00390000005185	ENSGT00940000163110	ENSGT00390000008296.b.a.a
Bovidae	ANCESTRAL SPECIES	14	ENSGT00940000156489	ENSGT00940000160420	ENSGT00940000156282.a.a	ENSGT00940000154821.b	ENSGT00520000061590	ENSGT00940000155460	ENSGT00940000157438	ENSGT00390000015757	ENSGT00940000164013	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00660000097148	ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00940000160907	ENSGT00390000013443.d ##22	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434.b	ENSGT00390000000375	ENSGT00940000161430	ENSGT00940000161373	ENSGT00390000002955	ENSGT00530000063839	ENSGT00390000009531	ENSGT00390000011483	ENSGT00940000167431	ENSGT00940000162767	ENSGT00390000005185	ENSGT00940000163110
Caprinae	ANCESTRAL SPECIES	14	ENSGT00940000154886.a.a	ENSGT00940000156489	ENSGT00940000160420	ENSGT00940000156282.a.a	ENSGT00940000154821.b	ENSGT00520000061590	ENSGT00940000155460	ENSGT00940000157438	ENSGT00390000015757	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00660000097148	ENSGT00940000155397.b	ENSGT00940000160907	ENSGT00530000063821.b.b	ENSGT00390000013443.d ##22	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434.b	ENSGT00390000000375	ENSGT00940000161430	ENSGT00940000161373	ENSGT00390000002955	ENSGT00530000063839	ENSGT00390000009531	ENSGT00390000011483	ENSGT00940000162767	ENSGT00390000005185	ENSGT00940000163110	ENSGT00390000008296.b.a.a
Rambouillet Sheep	MODERN SPECIES	11	KANK1 (ENSOARG00020024004)	DMRT1 (ENSOARG00020024107)	DMRT3 (ENSOARG00020024138)	DMRT2 (ENSOARG00020024148)	SMARCA2 (ENSOARG00020024243)	VLDLR (ENSOARG00020024482)	ENSOARG00020024556	KCNV2 (ENSOARG00020006537)	PUM3 (ENSOARG00020006587)	ENSOARG00020006681	RFX3 (ENSOARG00020006756)	GLIS3 (ENSOARG00020007233)	SLC1A1 (ENSOARG00020007364)	PLPP6 (ENSOARG00020007422)	ENSOARG00020007455	CDC37L1 (ENSOARG00020007479) ##22	AK3 (ENSOARG00020007523)	RCL1 (ENSOARG00020007598)	JAK2 (ENSOARG00020007686)	ENSOARG00020007887	PLGRKT (ENSOARG00020007941)	CD274 (ENSOARG00020007985)	ENSOARG00020008038	ENSOARG00020008062	RIC1 (ENSOARG00020008132)	ERMP1 (ENSOARG00020008927)	ENSOARG00020009072	MLANA (ENSOARG00020009106)	KIAA2026 (ENSOARG00020009163)	ENSOARG00020009214	IL33 (ENSOARG00020009248)
Goat	MODERN SPECIES	27	DMRT1 (ENSCHIG00000024212)	DMRT3 (ENSCHIG00000013041)	DMRT2 (ENSCHIG00000020138)	SMARCA2 (ENSCHIG00000025863)	ENSCHIG00000012185	VLDLR (ENSCHIG00000021572)	KCNV2 (ENSCHIG00000011625)	PUM3 (ENSCHIG00000021559)	RFX3 (ENSCHIG00000011556)	ENSCHIG00000019534	ENSCHIG00000007959	SLC1A1 (ENSCHIG00000018337)	PLPP6 (ENSCHIG00000001745)	SPATA6L (ENSCHIG00000020946)	ENSCHIG00000010369	CDC37L1 (ENSCHIG00000025238) ##22	AK3 (ENSCHIG00000024602)	RCL1 (ENSCHIG00000012407)	INSL6 (ENSCHIG00000020505)	JAK2 (ENSCHIG00000003903)	PLGRKT (ENSCHIG00000017669)	CD274 (ENSCHIG00000017335)	PDCD1LG2 (ENSCHIG00000024438)	RIC1 (ENSCHIG00000021856)	ERMP1 (ENSCHIG00000026817)	MLANA (ENSCHIG00000014493)	KIAA2026 (ENSCHIG00000024183)	RANBP6 (ENSCHIG00000006704)	IL33 (ENSCHIG00000020304)	ENSCHIG00000026418	UHRF2 (ENSCHIG00000015113)
Bovinae	ANCESTRAL SPECIES	14	ENSGT00940000154886.a.a	ENSGT00940000156489	ENSGT00940000160420	ENSGT00940000156282.a.a	ENSGT00940000154821.b	ENSGT00520000061590	ENSGT00940000155460	ENSGT00940000157438	ENSGT00390000015757	ENSGT00940000164013	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00940000160907	ENSGT00390000013443.d ##22	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434.b	ENSGT00390000000375	ENSGT00940000161430	ENSGT00940000161373	ENSGT00390000002955	ENSGT00530000063839	ENSGT00390000009531	ENSGT00390000011483	ENSGT00940000167431	ENSGT00390000005185	ENSGT00940000163110	ENSGT00390000010415.b
Bos	ANCESTRAL SPECIES	10	ENSGT00940000155876	ENSGT00940000154886.a.a	ENSGT00940000156489	ENSGT00940000160420	ENSGT00940000156282.a.a	ENSGT00940000154821.b	ENSGT00520000061590	ENSGT00940000155460	ENSGT00940000157438	ENSGT00390000015757	ENSGT00940000164013	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00390000013443.d ##22	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434.b	ENSGT00390000000375	ENSGT00940000161430	ENSGT00940000161373	ENSGT00390000002955	ENSGT00530000063839	ENSGT00390000009531	ENSGT00390000011483	ENSGT00940000167431	ENSGT00390000005185	ENSGT00940000163110	ENSGT00390000010415.b
Bos_b	ANCESTRAL SPECIES	3	ENSGT00940000155876	ENSGT00940000154886.a.a	ENSGT00940000156489	ENSGT00940000160420	ENSGT00940000156282.a.a	ENSGT00940000154821.b	ENSGT00520000061590	ENSGT00940000155460	ENSGT00940000157438	ENSGT00390000015757	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00940000155397.b	ENSGT00940000160907	ENSGT00530000063821.b.b	ENSGT00390000013443.d ##22	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434.b	ENSGT00390000000375	ENSGT00940000161430	ENSGT00940000161373	ENSGT00390000002955	ENSGT00530000063839	ENSGT00390000009531	ENSGT00390000011483	ENSGT00940000167431	ENSGT00390000005185	ENSGT00940000163110	ENSGT00390000010415.b
Hybrid Bos Indicus	MODERN SPECIES	27	DMRT3 (ENSBIXG00005018199)	DMRT2 (ENSBIXG00005018266)	SMARCA2 (ENSBIXG00005018551)	ENSBIXG00005005990	VLDLR (ENSBIXG00005003037)	KCNV2 (ENSBIXG00005018778)	PUM3 (ENSBIXG00005018805)	ENSBIXG00005018899	RFX3 (ENSBIXG00005003091)	GLIS3 (ENSBIXG00005002642)	ENSBIXG00005019106	SLC1A1 (ENSBIXG00005019133)	PLPP6 (ENSBIXG00005019138)	ENSBIXG00005019159	SPATA6L (ENSBIXG00005019220)	CDC37L1 (ENSBIXG00005019277) ##22	AK3 (ENSBIXG00005019326)	RCL1 (ENSBIXG00005019414)	JAK2 (ENSBIXG00005003171)	INSL6 (ENSBIXG00005003183)	PLGRKT (ENSBIXG00005006397)	CD274 (ENSBIXG00005003188)	PDCD1LG2 (ENSBIXG00005019595)	ENSBIXG00005019603	RIC1 (ENSBIXG00005019710)	ERMP1 (ENSBIXG00005000033)	ENSBIXG00005019813	ENSBIXG00005003243	MLANA (ENSBIXG00005006149)	ENSBIXG00005019895	KIAA2026 (ENSBIXG00005002637)
Bos_a	ANCESTRAL SPECIES	30	ENSGT00940000154886.a.a	ENSGT00940000156489	ENSGT00940000160420	ENSGT00940000156282.a.a	ENSGT00940000154821.b	ENSGT00940000155460	ENSGT00940000157438	ENSGT00390000015757	ENSGT00940000164013	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00940000160907	ENSGT00910000144347.a.a	ENSGT00390000013443.d ##22	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434.b	ENSGT00390000000375	ENSGT00940000161430	ENSGT00940000161373	ENSGT00390000002955	ENSGT00530000063839	ENSGT00390000009531	ENSGT00390000011483	ENSGT00940000167431	ENSGT00390000005185	ENSGT00940000163110	ENSGT00390000010415.b
Domestic yak	MODERN SPECIES	26	DMRT3 (ENSBGRG00000003946)	DMRT2 (ENSBGRG00000003984)	SMARCA2 (ENSBGRG00000004107)	VLDLR (ENSBGRG00000004545)	KCNV2 (ENSBGRG00000004767)	PUM3 (ENSBGRG00000004833)	ENSBGRG00000004951	RFX3 (ENSBGRG00000004985)	ENSBGRG00000005081	ENSBGRG00000005096	GLIS3 (ENSBGRG00000005123)	SLC1A1 (ENSBGRG00000005214)	SPATA6L (ENSBGRG00000005420)	PLPP6 (ENSBGRG00000005557)	ENSBGRG00000005568	CDC37L1 (ENSBGRG00000005637) ##22	AK3 (ENSBGRG00000005727)	RCL1 (ENSBGRG00000005812)	ENSBGRG00000005967	JAK2 (ENSBGRG00000005982)	INSL6 (ENSBGRG00000006012)	PLGRKT (ENSBGRG00000006032)	CD274 (ENSBGRG00000006097)	PDCD1LG2 (ENSBGRG00000006267)	RIC1 (ENSBGRG00000006377)	ENSBGRG00000006488	ERMP1 (ENSBGRG00000006502)	MLANA (ENSBGRG00000006530)	KIAA2026 (ENSBGRG00000006569)	ENSBGRG00000006611	ENSBGRG00000006647
Wild yak	MODERN SPECIES	400												SLC1A1 (ENSBMUG00000005311)	PLPP6 (ENSBMUG00000005280)	ENSBMUG00000005270	SPATA6L (ENSBMUG00000005249)	CDC37L1 (ENSBMUG00000005208) ##22	AK3 (ENSBMUG00000005196)	RCL1 (ENSBMUG00000005171)	JAK2 (ENSBMUG00000005141)	INSL6 (ENSBMUG00000005110)	PLGRKT (ENSBMUG00000005103)	CD274 (ENSBMUG00000005088)	PDCD1LG2 (ENSBMUG00000005066)	RIC1 (ENSBMUG00000005025)	ERMP1 (ENSBMUG00000004882)	MLANA (ENSBMUG00000004855)	KIAA2026 (ENSBMUG00000004847)	ENSBMUG00000004833
American bison	MODERN SPECIES	3328	DMRT1 (ENSBBBG00000016649)	DMRT3 (ENSBBBG00000016636)	DMRT2 (ENSBBBG00000016627)	SMARCA2 (ENSBBBG00000004105)	ENSBBBG00000016209	VLDLR (ENSBBBG00000008333)	ENSBBBG00000007174	KCNV2 (ENSBBBG00000016123)	PUM3 (ENSBBBG00000007035)	RFX3 (ENSBBBG00000003993)	GLIS3 (ENSBBBG00000016019)	SLC1A1 (ENSBBBG00000015989)	SPATA6L (ENSBBBG00000015978)	PLPP6 (ENSBBBG00000015953)	ENSBBBG00000003969	CDC37L1 (ENSBBBG00000002586) ##22	AK3 (ENSBBBG00000003960)	RCL1 (ENSBBBG00000015884)	JAK2 (ENSBBBG00000015845)	INSL6 (ENSBBBG00000015826)	PLGRKT (ENSBBBG00000015820)	CD274 (ENSBBBG00000015809)
Siberian musk deer	MODERN SPECIES	111						ENSMMSG00000002256	VLDLR (ENSMMSG00000002160)	KCNV2 (ENSMMSG00000002132)	PUM3 (ENSMMSG00000002099)	ENSMMSG00000002091	RFX3 (ENSMMSG00000002070)	GLIS3 (ENSMMSG00000002042)	SLC1A1 (ENSMMSG00000002015)	PLPP6 (ENSMMSG00000002003)	SPATA6L (ENSMMSG00000001959)	CDC37L1 (ENSMMSG00000001936) ##22	AK3 (ENSMMSG00000001923)	RCL1 (ENSMMSG00000001886)	ENSMMSG00000001874	JAK2 (ENSMMSG00000001846)	INSL6 (ENSMMSG00000001838)	PLGRKT (ENSMMSG00000001829)
Cetacea	ANCESTRAL SPECIES	9	ENSGT00940000154886.a.a	ENSGT00940000156489	ENSGT00940000160420	ENSGT00940000156282.a.a	ENSGT00940000154821.b	ENSGT00940000155460	ENSGT00940000157438	ENSGT00390000015757	ENSGT00940000164013	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00950000186013	ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00940000160907	ENSGT00390000013443.d ##22	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434.b	ENSGT00940000154434.a	ENSGT00390000000375	ENSGT00940000161430	ENSGT00940000161373	ENSGT00390000002955	ENSGT00530000063839	ENSGT00390000009531	ENSGT00390000011483	ENSGT00940000162767	ENSGT00390000005185	ENSGT00940000163110
Blue whale	MODERN SPECIES	17	DOCK8 (ENSBMSG00010000177)	ENSBMSG00010000100	KANK1 (ENSBMSG00010000089)	DMRT1 (ENSBMSG00010004442)	DMRT3 (ENSBMSG00010004420)	DMRT2 (ENSBMSG00010004396)	SMARCA2 (ENSBMSG00010004262)	VLDLR (ENSBMSG00010004233)	KCNV2 (ENSBMSG00010004219)	PUM3 (ENSBMSG00010004204)	RFX3 (ENSBMSG00010004165)	GLIS3 (ENSBMSG00010004124)	SLC1A1 (ENSBMSG00010004095)	PLPP6 (ENSBMSG00010004080)	SPATA6L (ENSBMSG00010004050)	CDC37L1 (ENSBMSG00010004036) ##22	AK3 (ENSBMSG00010004013)	RCL1 (ENSBMSG00010003993)	JAK2 (ENSBMSG00010003969)	INSL6 (ENSBMSG00010003955)	ENSBMSG00010003948	PLGRKT (ENSBMSG00010003942)	CD274 (ENSBMSG00010003928)	PDCD1LG2 (ENSBMSG00010003898)	RIC1 (ENSBMSG00010003869)	ERMP1 (ENSBMSG00010003832)	MLANA (ENSBMSG00010003817)	KIAA2026 (ENSBMSG00010003802)	ENSBMSG00010003784	ENSBMSG00010003773	IL33 (ENSBMSG00010003753)
Odontoceti	ANCESTRAL SPECIES	8	ENSGT00940000156489	ENSGT00940000160420	ENSGT00940000156282.a.a	ENSGT00940000165777.a.a	ENSGT00940000154821.b	ENSGT00940000155460	ENSGT00940000157438	ENSGT00390000015757	ENSGT00940000164013	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00950000186013	ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00940000160907	ENSGT00390000013443.d ##22	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434.b	ENSGT00940000154434.a	ENSGT00390000000375	ENSGT00940000161430	ENSGT00940000161373	ENSGT00390000002955	ENSGT00530000063839	ENSGT00390000009531	ENSGT00390000011483	ENSGT00940000162767	ENSGT00390000005185	ENSGT00940000163110
Sperm whale	MODERN SPECIES	20	DMRT1 (ENSPCTG00005004498)	DMRT3 (ENSPCTG00005004535)	DMRT2 (ENSPCTG00005004572)	ENSPCTG00005004671	ENSPCTG00005004691	ENSPCTG00005004736	VLDLR (ENSPCTG00005004995)	KCNV2 (ENSPCTG00005005193)	PUM3 (ENSPCTG00005005228)	ENSPCTG00005005299	RFX3 (ENSPCTG00005005359)	GLIS3 (ENSPCTG00005005407)	SLC1A1 (ENSPCTG00005005440)	SPATA6L (ENSPCTG00005005489)	PLPP6 (ENSPCTG00005005512)	CDC37L1 (ENSPCTG00005005531) ##22	AK3 (ENSPCTG00005005584)	RCL1 (ENSPCTG00005005644)	JAK2 (ENSPCTG00005005720)	INSL6 (ENSPCTG00005005856)	ENSPCTG00005005885	PLGRKT (ENSPCTG00005005902)	CD274 (ENSPCTG00005005931)	PDCD1LG2 (ENSPCTG00005005956)	RIC1 (ENSPCTG00005006024)	ERMP1 (ENSPCTG00005006142)	MLANA (ENSPCTG00005006205)	KIAA2026 (ENSPCTG00005006243)	RANBP6 (ENSPCTG00005006329)	IL33 (ENSPCTG00005006356)	TPD52L3 (ENSPCTG00005006421)
Odontoceti_a	ANCESTRAL SPECIES	15	ENSGT00940000156489	ENSGT00940000160420	ENSGT00940000156282.a.a	ENSGT00940000165777.a.a	ENSGT00940000154821.b	ENSGT00940000155460	ENSGT00940000157438	ENSGT00390000015757	ENSGT00940000164013	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00950000186013	ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00940000160907	ENSGT00390000013443.d ##22	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434.b	ENSGT00940000154434.a	ENSGT00390000000375	ENSGT00940000161430	ENSGT00940000161373	ENSGT00390000002955	ENSGT00530000063839	ENSGT00390000009531	ENSGT00390000011483	ENSGT00940000162767	ENSGT00390000005185	ENSGT00940000163110
Dolphin	MODERN SPECIES	3311														SPATA6L (ENSTTRG00000016521)	PLPP6 (ENSTTRG00000016522)	CDC37L1 (ENSTTRG00000016523) ##22	AK3 (ENSTTRG00000016524)	RCL1 (ENSTTRG00000016525)
Odontoceti_b	ANCESTRAL SPECIES	8	ENSGT00940000160420	ENSGT00940000156282.a.a	ENSGT00940000165777.a.a	ENSGT01050000244891.A.c.a.a	ENSGT00940000154821.b	ENSGT00940000155460	ENSGT00940000157438	ENSGT00390000015757	ENSGT00940000164013	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00950000186013	ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00940000160907	ENSGT00390000013443.d ##22	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434.b	ENSGT00940000154434.a	ENSGT00390000000375	ENSGT00940000161430	ENSGT00940000161373	ENSGT00390000002955	ENSGT00530000063839	ENSGT00390000009531	ENSGT00390000011483	ENSGT00940000162767	ENSGT00390000005185	ENSGT00940000163110
Vaquita	MODERN SPECIES	17	KANK1 (ENSPSNG00000018178)	DMRT1 (ENSPSNG00000018301)	DMRT3 (ENSPSNG00000018387)	DMRT2 (ENSPSNG00000018429)	ENSPSNG00000018606	ENSPSNG00000018632	SMARCA2 (ENSPSNG00000018802)	VLDLR (ENSPSNG00000019297)	KCNV2 (ENSPSNG00000019443)	PUM3 (ENSPSNG00000019496)	RFX3 (ENSPSNG00000019643)	GLIS3 (ENSPSNG00000019903)	SLC1A1 (ENSPSNG00000019992)	SPATA6L (ENSPSNG00000020084)	PLPP6 (ENSPSNG00000020203)	CDC37L1 (ENSPSNG00000020228) ##22	AK3 (ENSPSNG00000020263)	RCL1 (ENSPSNG00000020330)	JAK2 (ENSPSNG00000020398)	ENSPSNG00000020509	PLGRKT (ENSPSNG00000020541)	ENSPSNG00000020589	RIC1 (ENSPSNG00000020684)	ERMP1 (ENSPSNG00000020793)	MLANA (ENSPSNG00000020843)	KIAA2026 (ENSPSNG00000020897)	RANBP6 (ENSPSNG00000020980)	IL33 (ENSPSNG00000021022)	TPD52L3 (ENSPSNG00000021045)	UHRF2 (ENSPSNG00000021087)	GLDC (ENSPSNG00000021229)
Monodontidae	ANCESTRAL SPECIES	5	ENSGT00940000160420	ENSGT00940000156282.a.a	ENSGT00940000165777.a.a	ENSGT01050000244891.A.c.a.a	ENSGT00940000154821.b	ENSGT00940000155460	ENSGT00940000157438	ENSGT00390000015757	ENSGT00940000164013	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00950000186013	ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00940000160907	ENSGT00390000013443.d ##22	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434.b	ENSGT00940000154434.a	ENSGT00390000000375	ENSGT00940000161430	ENSGT00940000161373	ENSGT00390000002955	ENSGT00530000063839	ENSGT00390000009531	ENSGT00390000011483	ENSGT00940000162767	ENSGT00390000005185	ENSGT00940000163110
Narwhal	MODERN SPECIES	312	DMRT1 (ENSMMNG00015013112)	DMRT3 (ENSMMNG00015013099)	DMRT2 (ENSMMNG00015013077)	ENSMMNG00015021427	ENSMMNG00015021422	SMARCA2 (ENSMMNG00015021345)	VLDLR (ENSMMNG00015021252)	KCNV2 (ENSMMNG00015021226)	PUM3 (ENSMMNG00015021202)	ENSMMNG00015021179	RFX3 (ENSMMNG00015021042)	GLIS3 (ENSMMNG00015021011)	SLC1A1 (ENSMMNG00015020990)	PLPP6 (ENSMMNG00015020983)	SPATA6L (ENSMMNG00015020944)	CDC37L1 (ENSMMNG00015020918) ##22	AK3 (ENSMMNG00015020890)	RCL1 (ENSMMNG00015020841)	JAK2 (ENSMMNG00015020808)	ENSMMNG00015020785	ENSMMNG00015020775	PLGRKT (ENSMMNG00015020757)	CD274 (ENSMMNG00015020739)	PDCD1LG2 (ENSMMNG00015020694)	RIC1 (ENSMMNG00015020565)	ERMP1 (ENSMMNG00015020481)	MLANA (ENSMMNG00015020456)	KIAA2026 (ENSMMNG00015020402)	ENSMMNG00015020366	IL33 (ENSMMNG00015020337)	TPD52L3 (ENSMMNG00015020325)
Beluga whale	MODERN SPECIES	50	ENSDLEG00000019284	DMRT2 (ENSDLEG00000019289)	ENSDLEG00000019303	ENSDLEG00000019309	SMARCA2 (ENSDLEG00000019318)	VLDLR (ENSDLEG00000019340)	KCNV2 (ENSDLEG00000019382)	PUM3 (ENSDLEG00000019389)	RFX3 (ENSDLEG00000019460)	ENSDLEG00000019514	ENSDLEG00000019522	SLC1A1 (ENSDLEG00000019531)	ENSDLEG00000019547	ENSDLEG00000019609	PLPP6 (ENSDLEG00000019637)	CDC37L1 (ENSDLEG00000019644) ##22	AK3 (ENSDLEG00000019654)	RCL1 (ENSDLEG00000019668)	JAK2 (ENSDLEG00000019680)	ENSDLEG00000019692	RLN1 (ENSDLEG00000019703)	PLGRKT (ENSDLEG00000019711)	CD274 (ENSDLEG00000019715)	PDCD1LG2 (ENSDLEG00000019719)	RIC1 (ENSDLEG00000019725)	ERMP1 (ENSDLEG00000019731)	MLANA (ENSDLEG00000019742)	KIAA2026 (ENSDLEG00000019748)	RANBP6 (ENSDLEG00000019757)	IL33 (ENSDLEG00000019759)	TPD52L3 (ENSDLEG00000019764)
Laurasiatheria_b	ANCESTRAL SPECIES	11	ENSGT00940000154886.a.a	ENSGT00940000156489	ENSGT00940000160420	ENSGT00940000156282.a.a	ENSGT00940000154821.b	ENSGT00520000061590	ENSGT00940000155460	ENSGT00940000157438	ENSGT00390000015757	ENSGT00940000164013	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00940000160907	ENSGT00390000013443.d ##22	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434.b	ENSGT00940000154434.a	ENSGT00390000000375	ENSGT00940000161430	ENSGT00940000161373	ENSGT00390000002955	ENSGT00530000063839	ENSGT00390000009531	ENSGT00390000011483	ENSGT00940000162767	ENSGT00390000005185	ENSGT00940000163110
Carnivora	ANCESTRAL SPECIES	25	ENSGT00940000154886.a.a	ENSGT00940000156489	ENSGT00940000160420	ENSGT00940000156282.a.a	ENSGT00940000154821.b	ENSGT00520000061590	ENSGT00940000155460	ENSGT00940000157438	ENSGT00390000015757	ENSGT00940000164013	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00940000160907	ENSGT00390000013443.d ##22	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434.b	ENSGT00940000154434.a	ENSGT00390000000375	ENSGT00940000161430	ENSGT00940000161373	ENSGT00390000002955	ENSGT00530000063839	ENSGT00950000183043.a.b.b.a.a.a.b	ENSGT00550000074872	ENSGT00940000153947.A	ENSGT00940000160540	ENSGT00940000157484
Caniformia	ANCESTRAL SPECIES	29	ENSGT00940000154886.a.a	ENSGT00940000156489	ENSGT00940000160420	ENSGT00940000156282.a.a	ENSGT00940000154821.b	ENSGT00520000061590	ENSGT00940000155460	ENSGT00940000157438	ENSGT00390000015757	ENSGT00940000164013	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00940000160907	ENSGT00390000013443.d ##22	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434.b	ENSGT00940000154434.a	ENSGT00390000000375	ENSGT00940000161430	ENSGT00940000161373	ENSGT00390000002955	ENSGT00530000063839	ENSGT00950000183043.a.b.b.a.a.b.h	ENSGT00940000160228	ENSGT00950000183043.a.b.b.a.a.a.b	ENSGT00550000074872	ENSGT00940000153947.A
Canidae	ANCESTRAL SPECIES	47	ENSGT00940000154886.a.a	ENSGT00940000156489	ENSGT00940000160420	ENSGT00940000156282.a.a	ENSGT00940000154821.b	ENSGT00520000061590	ENSGT00940000155460	ENSGT00940000157438	ENSGT00390000015757	ENSGT00940000164013	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00940000160907	ENSGT00390000013443.d ##22	ENSGT00940000155120.lb.b	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434.b	ENSGT00940000154434.a	ENSGT00390000000375	ENSGT00940000161430	ENSGT00940000161373	ENSGT00390000002955	ENSGT00530000063839	ENSGT00950000183043.a.b.b.a.a.b.h	ENSGT00940000160228	ENSGT00950000183043.a.b.b.a.a.a.b	ENSGT00550000074872	ENSGT00940000153947.A
Canis_lupus	ANCESTRAL SPECIES		ENSGT00940000156489	ENSGT00940000160420	ENSGT00940000156282.a.a	ENSGT00950000182772.A.a.b.n.b	ENSGT00940000154821.b	ENSGT00520000061590	ENSGT00940000155460	ENSGT00940000157438	ENSGT00390000015757	ENSGT00940000164013	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00940000160907	ENSGT00390000013443.d ##22	ENSGT00940000155120.lb.b	ENSGT00530000063404.a	ENSGT01050000248397	ENSGT00940000155640	ENSGT00940000154434.b	ENSGT00940000154434.a	ENSGT00390000000375	ENSGT00940000161430	ENSGT00940000161373	ENSGT00390000002955	ENSGT00530000063839	ENSGT00950000183043.a.b.b.a.a.b.h	ENSGT00940000154257.j.nb.a	ENSGT00940000160228	ENSGT00950000183043.a.b.b.a.a.a.b
Dingo	MODERN SPECIES	125	DMRT3 (ENSCAFG00020026752)	DMRT2 (ENSCAFG00020026753)	ENSCAFG00020026759	ENSCAFG00020026766	ENSCAFG00020026802	ENSCAFG00020026863	VLDLR (ENSCAFG00020026865)	KCNV2 (ENSCAFG00020026866)	PUM3 (ENSCAFG00020026867)	RFX3 (ENSCAFG00020026868)	ENSCAFG00020026870	GLIS3 (ENSCAFG00020000104)	SLC1A1 (ENSCAFG00020000361)	SPATA6L (ENSCAFG00020000384)	PLPP6 (ENSCAFG00020000503)	CDC37L1 (ENSCAFG00020000516) ##22	ENSCAFG00020000594	ENSCAFG00020000622	RCL1 (ENSCAFG00020000638)	ENSCAFG00020000655	ENSCAFG00020000670	JAK2 (ENSCAFG00020001020)	INSL6 (ENSCAFG00020005010)	ENSCAFG00020005012	PLGRKT (ENSCAFG00020005050)	CD274 (ENSCAFG00020005055)	PDCD1LG2 (ENSCAFG00020005060)	RIC1 (ENSCAFG00020005108)	ERMP1 (ENSCAFG00020005183)	ENSCAFG00020005250	ENSCAFG00020005296
Dog	MODERN SPECIES		DMRT1 (ENSCAFG00845001983)	DMRT3 (ENSCAFG00845002003)	DMRT2 (ENSCAFG00845002026)	ENSCAFG00845002045	SMARCA2 (ENSCAFG00845002161)	VLDLR (ENSCAFG00845002345)	KCNV2 (ENSCAFG00845002424)	PUM3 (ENSCAFG00845002440)	ENSCAFG00845002474	RFX3 (ENSCAFG00845002562)	ENSCAFG00845002739	GLIS3 (ENSCAFG00845002759)	SLC1A1 (ENSCAFG00845002818)	SPATA6L (ENSCAFG00845002856)	PLPP6 (ENSCAFG00845002916)	CDC37L1 (ENSCAFG00845015553) ##22	ENSCAFG00845015626	ENSCAFG00845015667	JAK2 (ENSCAFG00845015728)	ENSCAFG00845015836	JAK2 (ENSCAFG00845015887)	ENSCAFG00845016006	INSL6 (ENSCAFG00845016024)	RLN2 (ENSCAFG00845016044)	PLGRKT (ENSCAFG00845016070)	CD274 (ENSCAFG00845016107)	PDCD1LG2 (ENSCAFG00845016232)	RIC1 (ENSCAFG00845016384)	ENSCAFG00845016712	ENSCAFG00845016939	ENSCAFG00845016963
Red fox	MODERN SPECIES	37	DMRT1 (ENSVVUG00000004545)	DMRT3 (ENSVVUG00000004555)	DMRT2 (ENSVVUG00000004562)	ENSVVUG00000004580	ENSVVUG00000004598	VLDLR (ENSVVUG00000004925)	ENSVVUG00000006514	KCNV2 (ENSVVUG00000006518)	PUM3 (ENSVVUG00000006527)	ENSVVUG00000006545	RFX3 (ENSVVUG00000006609)	GLIS3 (ENSVVUG00000007122)	SLC1A1 (ENSVVUG00000007200)	SPATA6L (ENSVVUG00000007223)	ENSVVUG00000007267	CDC37L1 (ENSVVUG00000007275) ##22	AK3 (ENSVVUG00000007282)	RCL1 (ENSVVUG00000007304)	JAK2 (ENSVVUG00000007315)	INSL6 (ENSVVUG00000007335)	CD274 (ENSVVUG00000007347)	ENSVVUG00000007360	PLGRKT (ENSVVUG00000007362)	PDCD1LG2 (ENSVVUG00000007366)	RIC1 (ENSVVUG00000007409)	ERMP1 (ENSVVUG00000007447)	ENSVVUG00000007464	ENSVVUG00000007496	ENSVVUG00000008064
Caniformia_b	ANCESTRAL SPECIES	32	ENSGT00940000154886.a.a	ENSGT00940000156489	ENSGT00940000160420	ENSGT00940000156282.a.a	ENSGT00940000154821.b	ENSGT00520000061590	ENSGT00940000155460	ENSGT00940000157438	ENSGT00390000015757	ENSGT00940000164013	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00940000160907	ENSGT00390000013443.d ##22	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434.b	ENSGT00940000154434.a	ENSGT00390000000375	ENSGT00940000161430	ENSGT00940000161373	ENSGT00390000002955	ENSGT00530000063839	ENSGT00950000183043.a.b.b.a.a.b.h	ENSGT00940000160228	ENSGT00950000183043.a.b.b.a.a.a.b	ENSGT00550000074872	ENSGT00940000153947.A
Ursidae	ANCESTRAL SPECIES	43	ENSGT00940000154886.a.a	ENSGT00940000156489	ENSGT00940000160420	ENSGT00940000156282.a.a	ENSGT00940000154821.b	ENSGT00520000061590	ENSGT00940000155460	ENSGT00940000157438	ENSGT00390000015757	ENSGT00940000164013	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00940000160907	ENSGT00390000013443.d ##22	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434.b	ENSGT00940000154434.a	ENSGT00390000000375	ENSGT00940000161430	ENSGT00940000161373	ENSGT00390000002955	ENSGT00530000063839	ENSGT00950000183043.a.b.b.a.a.b.h	ENSGT00940000160228	ENSGT00950000183043.a.b.b.a.b	ENSGT00550000074872	ENSGT00940000153947.A	ENSGT00940000160540
Ursus	ANCESTRAL SPECIES	50	ENSGT00940000154886.a.a	ENSGT00940000156489	ENSGT00940000160420	ENSGT00940000156282.a.a	ENSGT00940000154821.b	ENSGT00940000155460	ENSGT00940000157438	ENSGT00390000015757	ENSGT00940000164013	ENSGT00940000166172	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00940000160907	ENSGT00390000013443.d ##22	ENSGT00940000155120.hb.a	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434.b	ENSGT00940000154434.a	ENSGT00390000000375	ENSGT00940000161430	ENSGT00940000161373	ENSGT00390000002955	ENSGT00530000063839.g	ENSGT00530000063839.h	ENSGT00950000183043.a.b.b.a.a.b.h	ENSGT00940000160228	ENSGT00950000183043.a.b.b.a.a.a.b	ENSGT00550000074872
American black bear	MODERN SPECIES	4544													SLC1A1 (ENSUAMG00000009116)	SPATA6L (ENSUAMG00000009016)	PLPP6 (ENSUAMG00000009008)	CDC37L1 (ENSUAMG00000009007) ##22	ENSUAMG00000008999
Polar bear	MODERN SPECIES	171	KANK1 (ENSUMAG00000019362)	ENSUMAG00000019350	DMRT2 (ENSUMAG00000019339)	ENSUMAG00000019328	ENSUMAG00000019303	VLDLR (ENSUMAG00000018747)	KCNV2 (ENSUMAG00000018690)	PUM3 (ENSUMAG00000018443)	ENSUMAG00000018187	ENSUMAG00000018118	RFX3 (ENSUMAG00000018101)	GLIS3 (ENSUMAG00000018031)	SLC1A1 (ENSUMAG00000017970)	ENSUMAG00000017954	SPATA6L (ENSUMAG00000017942)	CDC37L1 (ENSUMAG00000017926) ##22	ENSUMAG00000017904	RCL1 (ENSUMAG00000017890)	JAK2 (ENSUMAG00000016820)	INSL6 (ENSUMAG00000016724)	ENSUMAG00000016719	CD274 (ENSUMAG00000016708)	PDCD1LG2 (ENSUMAG00000016707)	RIC1 (ENSUMAG00000016695)	ENSUMAG00000016690	ENSUMAG00000016687	ENSUMAG00000016678	ENSUMAG00000016675	ENSUMAG00000016672	ENSUMAG00000016671	ENSUMAG00000016656
Giant Panda	MODERN SPECIES	8	DOCK8 (ENSAMEG00000006698)	KANK1 (ENSAMEG00000006667)	DMRT3 (ENSAMEG00000006664)	DMRT2 (ENSAMEG00000006648)	ENSAMEG00000019747	SMARCA2 (ENSAMEG00000012325)	ENSAMEG00000027822	VLDLR (ENSAMEG00000012233)	KCNV2 (ENSAMEG00000012228)	PUM3 (ENSAMEG00000012187)	ENSAMEG00000012183	RFX3 (ENSAMEG00000012132)	GLIS3 (ENSAMEG00000002733)	SLC1A1 (ENSAMEG00000002682)	ENSAMEG00000002674	CDC37L1 (ENSAMEG00000002657) ##22	AK3 (ENSAMEG00000002640)	RCL1 (ENSAMEG00000002631)	JAK2 (ENSAMEG00000009661)	INSL6 (ENSAMEG00000009778)	ENSAMEG00000009780	CD274 (ENSAMEG00000009800)	PLGRKT (ENSAMEG00000009795)	PDCD1LG2 (ENSAMEG00000009830)	RIC1 (ENSAMEG00000009846)	ENSAMEG00000009883	ENSAMEG00000009909	ENSAMEG00000031178	ENSAMEG00000017286	ENSAMEG00000026961	ENSAMEG00000017351
Mustelinae	ANCESTRAL SPECIES	87	ENSGT00940000155876	ENSGT00940000154886.a.a	ENSGT00940000156489	ENSGT00940000160420	ENSGT00940000156282.a.a	ENSGT00940000154821.b	ENSGT00940000155460	ENSGT00940000157438	ENSGT00390000015757	ENSGT00940000164013	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00940000155397.b	ENSGT00940000160907	ENSGT00530000063821.b.b	ENSGT00390000013443.d ##22	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434.b	ENSGT00940000154434.a	ENSGT00390000000375	ENSGT00940000161430	ENSGT00940000161373	ENSGT00390000002955	ENSGT00530000063839
Ferret	MODERN SPECIES	281	DOCK8 (ENSMPUG00000005223)	KANK1 (ENSMPUG00000005216)	DMRT1 (ENSMPUG00000005204)	DMRT2 (ENSMPUG00000005199)	ENSMPUG00000005192	SMARCA2 (ENSMPUG00000005171)	ENSMPUG00000005169	VLDLR (ENSMPUG00000005155)	KCNV2 (ENSMPUG00000005137)	PUM3 (ENSMPUG00000005125)	ENSMPUG00000005120	RFX3 (ENSMPUG00000005101)	GLIS3 (ENSMPUG00000005095)	SLC1A1 (ENSMPUG00000005081)	SPATA6L (ENSMPUG00000005024)	CDC37L1 (ENSMPUG00000005018) ##22	AK3 (ENSMPUG00000005006)	RCL1 (ENSMPUG00000004998)	JAK2 (ENSMPUG00000004974)	INSL6 (ENSMPUG00000004968)	ENSMPUG00000004961	CD274 (ENSMPUG00000004954)	PDCD1LG2 (ENSMPUG00000004909)	ENSMPUG00000004903	ENSMPUG00000004889	ERMP1 (ENSMPUG00000004878)	ENSMPUG00000004873	MFSD14B (ENSMPUG00000004866)	ENSMPUG00000019578	ZNF484 (ENSMPUG00000004860)	IARS1 (ENSMPUG00000004835)
American mink	MODERN SPECIES	365												GLIS3 (ENSNVIG00000021365)	SLC1A1 (ENSNVIG00000021350)	PLPP6 (ENSNVIG00000021343)	SPATA6L (ENSNVIG00000021312)	CD37L (ENSNVIG00000021293) ##22	AK3 (ENSNVIG00000021277)	RCL1 (ENSNVIG00000021229)	JAK2 (ENSNVIG00000021199)	INSL6 (ENSNVIG00000021192)	ENSNVIG00000021190	PLGRKT (ENSNVIG00000021188)
Felidae	ANCESTRAL SPECIES	28	ENSGT00940000156489	ENSGT00940000160420	ENSGT00940000156282.a.a	ENSGT00940000154821.b	ENSGT00520000061590	ENSGT00940000155460	ENSGT00940000157438	ENSGT00390000015757	ENSGT00940000164013	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00940000155028.q.b.e.b	ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00940000160907	ENSGT00390000013443.d ##22	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434.b	ENSGT00940000154434.a	ENSGT00390000000375	ENSGT00940000161430	ENSGT00940000161373	ENSGT00390000002955	ENSGT00530000063839	ENSGT00950000183043.a.b.b.a.a.b.g.b	ENSGT00940000160228	ENSGT00950000183043.a.b.b.a.a.a.a.a.a	ENSGT00550000074872	ENSGT00940000153947.A
Cat	MODERN SPECIES	244	KANK1 (ENSFCAG00000006458)	DMRT1 (ENSFCAG00000006459)	DMRT3 (ENSFCAG00000036847)	DMRT2 (ENSFCAG00000006461)	SMARCA2 (ENSFCAG00000001568)	ENSFCAG00000041218	VLDLR (ENSFCAG00000013257)	KCNV2 (ENSFCAG00000004335)	ENSFCAG00000013260	RFX3 (ENSFCAG00000012950)	GLIS3 (ENSFCAG00000046401)	ENSFCAG00000037557	SLC1A1 (ENSFCAG00000023590)	PLPP6 (ENSFCAG00000038113)	SPATA6L (ENSFCAG00000002369)	CDC37L1 (ENSFCAG00000027076) ##22	AK3 (ENSFCAG00000028063)	RCL1 (ENSFCAG00000014557)	JAK2 (ENSFCAG00000028588)	INSL6 (ENSFCAG00000044599)	RLN (ENSFCAG00000011471)	PLGRKT (ENSFCAG00000039638)	CD274 (ENSFCAG00000009047)	PDCD1LG2 (ENSFCAG00000009048)	RIC1 (ENSFCAG00000014910)	ERMP1 (ENSFCAG00000014912)	ENSFCAG00000047453	ENSFCAG00000021894	ENSFCAG00000046819	ENSFCAG00000021943	SPTLC1 (ENSFCAG00000004693)
Panthera	ANCESTRAL SPECIES	34	ENSGT00940000156489	ENSGT00940000160420	ENSGT00940000156282.a.a	ENSGT00940000154821.b	ENSGT00520000061590	ENSGT00940000155460	ENSGT00940000157438	ENSGT00390000015757	ENSGT00940000164013	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00940000155028.q.b.e.b	ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00940000160907	ENSGT00390000013443.d ##22	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434.b	ENSGT00940000154434.a	ENSGT00390000000375	ENSGT00940000161430	ENSGT00940000161373	ENSGT00390000002955	ENSGT00530000063839	ENSGT00940000160228	ENSGT00950000183043.a.b.b.a.a.a.a.a.a	ENSGT00550000074872	ENSGT00940000153947.A	ENSGT00940000160540
Tiger	MODERN SPECIES	463					ENSPTIG00000015817	ENSPTIG00000010794	ENSPTIG00000009737	VLDLR (ENSPTIG00000005593)	PUM3 (ENSPTIG00000021934)	ENSPTIG00000021167	RFX3 (ENSPTIG00000017617)	GLIS3 (ENSPTIG00000015969)	ENSPTIG00000014983	SLC1A1 (ENSPTIG00000013599)	SPATA6L (ENSPTIG00000011794)	CDC37L1 (ENSPTIG00000008469) ##22	AK3 (ENSPTIG00000000703)	RCL1 (ENSPTIG00000019031)	JAK2 (ENSPTIG00000016939)	INSL6 (ENSPTIG00000016722)	ENSPTIG00000016439	PLGRKT (ENSPTIG00000015914)	CD274 (ENSPTIG00000014398)	PDCD1LG2 (ENSPTIG00000013516)	RIC1 (ENSPTIG00000007073)	ERMP1 (ENSPTIG00000005202)	ENSPTIG00000012403
Panthera_a	ANCESTRAL SPECIES	35	ENSGT00940000154886.a.a	ENSGT00940000156489	ENSGT00940000160420	ENSGT00940000156282.a.a	ENSGT00940000154821.b	ENSGT00520000061590	ENSGT00940000155460	ENSGT00940000157438	ENSGT00390000015757	ENSGT00940000164013	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00940000160907	ENSGT00390000013443.d ##22	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434.b	ENSGT00940000154434.a	ENSGT00390000000375	ENSGT00940000161430	ENSGT00940000161373	ENSGT00390000002955	ENSGT00530000063839	ENSGT00940000160228	ENSGT00950000183043.a.b.b.a.a.a.a.a.a	ENSGT00550000074872	ENSGT00940000153947.A	ENSGT00940000160540
leopard	MODERN SPECIES	42	KANK1 (ENSPPRG00000002516)	DMRT1 (ENSPPRG00000002380)	DMRT3 (ENSPPRG00000002367)	DMRT2 (ENSPPRG00000002109)	SMARCA2 (ENSPPRG00000001879)	ENSPPRG00000001027	VLDLR (ENSPPRG00000000915)	KCNV2 (ENSPPRG00000000862)	PUM3 (ENSPPRG00000000809)	ENSPPRG00000000748	RFX3 (ENSPPRG00000000606)	GLIS3 (ENSPPRG00000000400)	SLC1A1 (ENSPPRG00000000232)	SPATA6L (ENSPPRG00000000218)	PLPP6 (ENSPPRG00000019670)	CDC37L1 (ENSPPRG00000000059) ##22	AK3 (ENSPPRG00000000041)	RCL1 (ENSPPRG00000022645)	JAK2 (ENSPPRG00000022744)	INSL6 (ENSPPRG00000022777)	PLGRKT (ENSPPRG00000022792)	CD274 (ENSPPRG00000022858)	PDCD1LG2 (ENSPPRG00000022891)	RIC1 (ENSPPRG00000022984)	ERMP1 (ENSPPRG00000023169)	ENSPPRG00000023237	SPTLC1 (ENSPPRG00000023598)	ROR2 (ENSPPRG00000023627)	NFIL3 (ENSPPRG00000019620)	AUH (ENSPPRG00000023647)	SYK (ENSPPRG00000023709)
lion	MODERN SPECIES	13	KANK1 (ENSPLOG00000016894)	DMRT1 (ENSPLOG00000017065)	DMRT3 (ENSPLOG00000017150)	DMRT2 (ENSPLOG00000017190)	SMARCA2 (ENSPLOG00000017478)	ENSPLOG00000017911	VLDLR (ENSPLOG00000017962)	KCNV2 (ENSPLOG00000018027)	PUM3 (ENSPLOG00000018076)	ENSPLOG00000018220	RFX3 (ENSPLOG00000018336)	GLIS3 (ENSPLOG00000018479)	SLC1A1 (ENSPLOG00000018538)	SPATA6L (ENSPLOG00000018652)	PLPP6 (ENSPLOG00000018812)	CDC37L1 (ENSPLOG00000018840) ##22	AK3 (ENSPLOG00000018913)	RCL1 (ENSPLOG00000019004)	JAK2 (ENSPLOG00000019062)	INSL6 (ENSPLOG00000019128)	ENSPLOG00000019152	PLGRKT (ENSPLOG00000019176)	CD274 (ENSPLOG00000019211)	PDCD1LG2 (ENSPLOG00000019232)	RIC1 (ENSPLOG00000019269)	ERMP1 (ENSPLOG00000019376)	ENSPLOG00000019445	ENSPLOG00000019547	SPTLC1 (ENSPLOG00000011243)	ROR2 (ENSPLOG00000011343)	NFIL3 (ENSPLOG00000011410)
Laurasiatheria_c	ANCESTRAL SPECIES	11	ENSGT00940000154886.a.a	ENSGT00940000156489	ENSGT00940000160420	ENSGT00940000156282.a.a	ENSGT00940000154821.b	ENSGT00520000061590	ENSGT00940000155460	ENSGT00940000157438	ENSGT00390000015757	ENSGT00940000164013	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00940000160907	ENSGT00390000013443.d ##22	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434.b	ENSGT00940000154434.a	ENSGT00390000000375	ENSGT00940000161430	ENSGT00940000161373	ENSGT00390000002955	ENSGT00530000063839	ENSGT00390000009531	ENSGT00390000011483	ENSGT00940000162767	ENSGT00390000005185	ENSGT00940000163110
Equus	ANCESTRAL SPECIES	37	ENSGT00940000154886.a.a	ENSGT00940000156489	ENSGT00940000160420	ENSGT00940000156282.a.a	ENSGT00940000154821.b	ENSGT00520000061590	ENSGT00940000155460	ENSGT00940000157438	ENSGT00390000015757	ENSGT00940000164013	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00940000160907	ENSGT00390000013443.d ##22	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434.b	ENSGT00940000154434.a	ENSGT00390000000375	ENSGT00940000161430	ENSGT00940000161373	ENSGT00390000002955	ENSGT00530000063839	ENSGT00390000009531	ENSGT00390000011483	ENSGT00940000162767	ENSGT00390000005185	ENSGT00940000163110.a
Donkey	MODERN SPECIES	15	DMRT3 (ENSEASG00005010303)	DMRT2 (ENSEASG00005010307)	ENSEASG00005032228	ENSEASG00005033232	ENSEASG00005010323	VLDLR (ENSEASG00005010330)	KCNV2 (ENSEASG00005010348)	PUM3 (ENSEASG00005010350)	ENSEASG00005010361	ENSEASG00005010358	RFX3 (ENSEASG00005010402)	GLIS3 (ENSEASG00005010634)	SLC1A1 (ENSEASG00005010637)	PLPP6 (ENSEASG00005010645)	SPATA6L (ENSEASG00005010642)	CDC37L1 (ENSEASG00005010646) ##22	AK3 (ENSEASG00005010651)	RCL1 (ENSEASG00005010653)	JAK2 (ENSEASG00005010656)	INSL6 (ENSEASG00005037792)	ENSEASG00005010659	PLGRKT (ENSEASG00005034012)	CD274 (ENSEASG00005010663)	PDCD1LG2 (ENSEASG00005010667)	RIC1 (ENSEASG00005010673)	ERMP1 (ENSEASG00005010680)	MLANA (ENSEASG00005028588)	KIAA2026 (ENSEASG00005010685)	ENSEASG00005029347	IL33 (ENSEASG00005010691)	TPD52L3 (ENSEASG00005036119)
Horse	MODERN SPECIES	15	DMRT1 (ENSECAG00000060160)	DMRT3 (ENSECAG00000023412)	DMRT2 (ENSECAG00000035701)	ENSECAG00000047891	ENSECAG00000045647	VLDLR (ENSECAG00000021859)	ENSECAG00000037169	KCNV2 (ENSECAG00000016602)	PUM3 (ENSECAG00000017193)	ENSECAG00000009736	RFX3 (ENSECAG00000011075)	GLIS3 (ENSECAG00000020544)	SLC1A1 (ENSECAG00000010935)	SPATA6L (ENSECAG00000021902)	PLPP6 (ENSECAG00000023969)	CDC37L1 (ENSECAG00000000269) ##22	AK3 (ENSECAG00000011235)	ENSECAG00000058759	RCL1 (ENSECAG00000015973)	JAK2 (ENSECAG00000009119)	INSL6 (ENSECAG00000053846)	PLGRKT (ENSECAG00000015003)	PLGRKT (ENSECAG00000051327)	CD274 (ENSECAG00000016312)	PDCD1LG2 (ENSECAG00000020578)	RIC1 (ENSECAG00000006558)	ERMP1 (ENSECAG00000018498)	MLANA (ENSECAG00000009103)	KIAA2026 (ENSECAG00000006216)	RANBP6 (ENSECAG00000006243)	IL33 (ENSECAG00000010475)
Chiroptera	ANCESTRAL SPECIES	40	ENSGT00940000155876	ENSGT00940000154886.a.a	ENSGT00940000156489	ENSGT00940000160420	ENSGT00940000156282.a.a	ENSGT00940000154821.b	ENSGT00940000155460	ENSGT00940000157438	ENSGT00390000015757	ENSGT00940000164013	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00940000160907	ENSGT00390000013443.d ##22	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434.b	ENSGT00940000154434.a	ENSGT00390000000375	ENSGT00940000161430	ENSGT00940000161373	ENSGT00390000002955	ENSGT00530000063839	ENSGT00390000009531	ENSGT00390000011483	ENSGT00940000162767	ENSGT00390000005185	ENSGT00940000163110
Microchiroptera	ANCESTRAL SPECIES	36	ENSGT00940000155876	ENSGT00940000154886.a.a	ENSGT00940000156489	ENSGT00940000160420	ENSGT00940000156282.a.a	ENSGT00940000154821.b	ENSGT00940000155460	ENSGT00940000157438	ENSGT00390000015757	ENSGT00940000164013	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00940000160907	ENSGT00390000013443.d ##22	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434.b	ENSGT00940000154434.a	ENSGT00390000000375	ENSGT00940000161430	ENSGT00940000161373	ENSGT00390000002955	ENSGT00530000063839	ENSGT00390000009531	ENSGT00390000011483	ENSGT00940000162767	ENSGT00390000005185	ENSGT00940000163110
Greater horseshoe bat	MODERN SPECIES	3	KANK1 (ENSRFEG00010006153)	DMRT1 (ENSRFEG00010006049)	DMRT3 (ENSRFEG00010006020)	DMRT2 (ENSRFEG00010005950)	SMARCA2 (ENSRFEG00010005719)	VLDLR (ENSRFEG00010005438)	KCNV2 (ENSRFEG00010005355)	ENSRFEG00010005315	ENSRFEG00010005258	RFX3 (ENSRFEG00010005210)	GLIS3 (ENSRFEG00010005187)	SLC1A1 (ENSRFEG00010005159)	ENSRFEG00010005145	PLPP6 (ENSRFEG00010005138)	SPATA6L (ENSRFEG00010005120)	CDC37L1 (ENSRFEG00010015324) ##22	AK3 (ENSRFEG00010015150)	RCL1 (ENSRFEG00010015039)	JAK2 (ENSRFEG00010014972)	INSL6 (ENSRFEG00010014917)	ENSRFEG00010014899	ENSRFEG00010014826	ENSRFEG00010014802	PLGRKT (ENSRFEG00010014761)	CD274 (ENSRFEG00010014726)	PDCD1LG2 (ENSRFEG00010014656)	RIC1 (ENSRFEG00010014565)	ERMP1 (ENSRFEG00010014298)	MLANA (ENSRFEG00010014270)	KIAA2026 (ENSRFEG00010013980)	ENSRFEG00010013907
Microbat	MODERN SPECIES	1067					SMARCA2 (ENSMLUG00000002342)	VLDLR (ENSMLUG00000002294)	KCNV2 (ENSMLUG00000002304)	PUM3 (ENSMLUG00000002309)	ENSMLUG00000022735	RFX3 (ENSMLUG00000013765)	ENSMLUG00000030513	ENSMLUG00000014482	ENSMLUG00000012988	SPATA6L (ENSMLUG00000012996)	PLPP6 (ENSMLUG00000017269)	CDC37L1 (ENSMLUG00000017270) ##22	AK3 (ENSMLUG00000017272)	RCL1 (ENSMLUG00000009654)	JAK2 (ENSMLUG00000012756)	INSL6 (ENSMLUG00000007982)	ENSMLUG00000009569	PLGRKT (ENSMLUG00000009582)	CD274 (ENSMLUG00000009607)	PDCD1LG2 (ENSMLUG00000009533)	RIC1 (ENSMLUG00000002399)	ERMP1 (ENSMLUG00000002419)
Megabat	MODERN SPECIES	3886													SLC1A1 (ENSPVAG00000015747)	SPATA6L (ENSPVAG00000015748)	PLPP6 (ENSPVAG00000015749)	CDC37L1 (ENSPVAG00000015750) ##22	AK3 (ENSPVAG00000015751)	RCL1 (ENSPVAG00000015752)
Marsupialia	ANCESTRAL SPECIES	6	ENSGT00940000162728	ENSGT00390000000306	ENSGT00390000012605	ENSGT00550000074873	ENSGT00410000025739.c.a	ENSGT00940000153882.a.b.b.a	ENSGT00390000011149	ENSGT00940000155289.C.a.a.b	ENSGT00390000015757	ENSGT00940000164013	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00940000160907.a	ENSGT00390000013443.d ##22	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434	ENSGT00390000000375	ENSGT00940000161430	ENSGT00940000161373	ENSGT00390000002955	ENSGT00530000063839	ENSGT00390000009531	ENSGT00390000011483	ENSGT00390000008296.b.a.a	ENSGT00390000017970	ENSGT00940000154930	ENSGT00390000003343
Marsupialia_b	ANCESTRAL SPECIES	11	ENSGT00940000162728	ENSGT00390000000306	ENSGT00390000012605	ENSGT00550000074873	ENSGT00410000025739.c.a	ENSGT00940000153882.a.b.b.a	ENSGT00390000011149	ENSGT00940000155289.C.a.a.b	ENSGT00390000015757	ENSGT00940000164013	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00940000160907.a	ENSGT00390000013443.d ##22	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434	ENSGT00390000000375	ENSGT00940000161430	ENSGT00940000161373	ENSGT00390000002955	ENSGT00530000063839	ENSGT00390000009531	ENSGT00390000011483	ENSGT00390000008296.b.a.a	ENSGT00390000017970	ENSGT00940000154930	ENSGT00390000003343
Diprotodontia	ANCESTRAL SPECIES	19	ENSGT00940000162728	ENSGT00390000000306	ENSGT00390000012605	ENSGT00550000074873	ENSGT00410000025739.c.a	ENSGT00940000153882.a.b.b.a	ENSGT00390000011149	ENSGT00940000155289.C.a.a.b	ENSGT00390000015757	ENSGT00940000164013	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00940000160907.a	ENSGT00390000013443.d ##22	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434	ENSGT00390000000375	ENSGT00940000161430	ENSGT00940000161373	ENSGT00390000002955	ENSGT00530000063839	ENSGT00390000009531	ENSGT00390000011483	ENSGT00390000008296.b.a.a	ENSGT00390000017970	ENSGT00940000154930	ENSGT00390000003343
Wallaby	MODERN SPECIES	1642																ENSMEUG00000001784 ##22
Diprotodontia_a	ANCESTRAL SPECIES	21	ENSGT00940000162728	ENSGT00390000000306	ENSGT00390000012605	ENSGT00550000074873	ENSGT00410000025739.c.a	ENSGT00940000153882.a.b.b.a	ENSGT00390000011149	ENSGT00940000155289.C.a.a.b	ENSGT00390000015757.w	ENSGT00940000164013	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00940000160907.a	ENSGT00390000013443.d ##22	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434	ENSGT00390000000375	ENSGT00940000161430	ENSGT00940000161373	ENSGT00390000002955	ENSGT00530000063839	ENSGT00390000009531	ENSGT00390000011483	ENSGT00390000008296.b.a.a	ENSGT00390000017970	ENSGT00940000154930	ENSGT00390000003343
koala	MODERN SPECIES	113	ENSPCIG00000030545	AMDHD2 (ENSPCIG00000030546)	TBC1D24 (ENSPCIG00000030548)	NTN3 (ENSPCIG00000030549)	ENSPCIG00000030550	ENSPCIG00000030552	PUM3 (ENSPCIG00000030598)	ENSPCIG00000030606	RFX3 (ENSPCIG00000024087)	ENSPCIG00000024086	ENSPCIG00000032109	SLC1A1 (ENSPCIG00000001803)	ENSPCIG00000025425	ENSPCIG00000025428	ENSPCIG00000035241	CDC37L1 (ENSPCIG00000000083) ##22	ENSPCIG00000000144	RCL1 (ENSPCIG00000000188)	JAK2 (ENSPCIG00000000252)	ENSPCIG00000036019	ENSPCIG00000034412	PLGRKT (ENSPCIG00000008213)	ENSPCIG00000000288	ENSPCIG00000000358	ENSPCIG00000000400	RIC1 (ENSPCIG00000000440)	ERMP1 (ENSPCIG00000000514)	MLANA (ENSPCIG00000016664)	KIAA2026 (ENSPCIG00000016666)	UHRF2 (ENSPCIG00000009528)	GLDC (ENSPCIG00000032529)
Common wonbat	MODERN SPECIES	1009	ZNF316 (ENSVURG00010007148)	ENSVURG00010007142	ENSVURG00010007136	AMDHD2 (ENSVURG00010007093)	ENSVURG00010007067	TBC1D24 (ENSVURG00010007018)	NTN3 (ENSVURG00010007004)	ENSVURG00010006992	ENSVURG00010006968	ENSVURG00010006948	RFX3 (ENSVURG00010006911)	GLIS3 (ENSVURG00010006895)	SLC1A1 (ENSVURG00010006864)	ENSVURG00010006853	PLPP6 (ENSVURG00010006844)	CDC37L1 (ENSVURG00010006832) ##22	AK3 (ENSVURG00010006826)	RCL1 (ENSVURG00010006818)	JAK2 (ENSVURG00010006805)	PLGRKT (ENSVURG00010006799)	CD274 (ENSVURG00010006794)	RIC1 (ENSVURG00010006750)	ERMP1 (ENSVURG00010006720)	MLANA (ENSVURG00010006707)	KIAA2026 (ENSVURG00010006687)	UHRF2 (ENSVURG00010006652)	GLDC (ENSVURG00010005739)	KDM4C (ENSVURG00010005641)	ENSVURG00010005615	PTPRD (ENSVURG00010005527)	ENSVURG00010005463
Tasmanian devil	MODERN SPECIES		ENSSHAG00000013445	ENSSHAG00000027414	ATP6V0C (ENSSHAG00000014251)	ENSSHAG00000014430	ENSSHAG00000025501	ENSSHAG00000031126	ENSSHAG00000000892	ENSSHAG00000003730	ENSSHAG00000002395	RFX3 (ENSSHAG00000003775)	ENSSHAG00000028825	GLIS3 (ENSSHAG00000030971)	SLC1A1 (ENSSHAG00000012371)	PLPP6 (ENSSHAG00000026797)	ENSSHAG00000012947	CDC37L1 (ENSSHAG00000013393) ##22	AK3 (ENSSHAG00000028635)	ENSSHAG00000029924	RCL1 (ENSSHAG00000014086)	JAK2 (ENSSHAG00000014900)	ENSSHAG00000015262	PLGRKT (ENSSHAG00000001757)	CD274 (ENSSHAG00000002682)	ENSSHAG00000004176	RIC1 (ENSSHAG00000000924)	ERMP1 (ENSSHAG00000004720)	MLANA (ENSSHAG00000006138)	KIAA2026 (ENSSHAG00000030776)	ENSSHAG00000031943	UHRF2 (ENSSHAG00000023237)	GLDC (ENSSHAG00000005373)
Opossum	MODERN SPECIES	5	NTN3 (ENSMODG00000015434)	ENSMODG00000015432	ENSMODG00000015420	PBK (ENSMODG00000015425)	PUM3 (ENSMODG00000015417)	ENSMODG00000015412	RFX3 (ENSMODG00000015410)	ENSMODG00000039449	ENSMODG00000044455	GLIS3 (ENSMODG00000015403)	ENSMODG00000045366	SLC1A1 (ENSMODG00000015399)	ENSMODG00000025440	ENSMODG00000051594	ENSMODG00000022953	CDC37L1 (ENSMODG00000015385) ##22	AK3 (ENSMODG00000042741)	ENSMODG00000029481	RCL1 (ENSMODG00000015377)	JAK2 (ENSMODG00000015373)	RFLB (ENSMODG00000048062)	PLGRKT (ENSMODG00000015353)	ENSMODG00000015352	ENSMODG00000015349	RIC1 (ENSMODG00000015344)	ERMP1 (ENSMODG00000015324)	MLANA (ENSMODG00000015296)	KIAA2026 (ENSMODG00000015293)	ENSMODG00000022954	UHRF2 (ENSMODG00000015238)	GLDC (ENSMODG00000015225)
Platypus	MODERN SPECIES	88	KANK1 (ENSOANG00000008293)	DMRT1 (ENSOANG00000036834)	DMRT3 (ENSOANG00000008295)	DMRT2 (ENSOANG00000008296)	ENSOANG00000008297	SMARCA2 (ENSOANG00000008299)	VLDLR (ENSOANG00000014993)	KCNV2 (ENSOANG00000014994)	PUM3 (ENSOANG00000014995)	ENSOANG00000043031	RFX3 (ENSOANG00000014996)	GLIS3 (ENSOANG00000014997)	SLC1A1 (ENSOANG00000013192)	ENSOANG00000039420	ENSOANG00000036739	CDC37L1 (ENSOANG00000001511) ##22	ENSOANG00000049559	AK3 (ENSOANG00000001505)	RCL1 (ENSOANG00000013193)	JAK2 (ENSOANG00000010092)	ENSOANG00000031851	PLGRKT (ENSOANG00000013191)	CD274 (ENSOANG00000010091)	ENSOANG00000010090	RIC1 (ENSOANG00000010088)	ERMP1 (ENSOANG00000010083)	MLANA (ENSOANG00000036136)	KIAA2026 (ENSOANG00000015760)	UHRF2 (ENSOANG00000001083)	GLDC (ENSOANG00000041168)	ENSOANG00000001081
Sauria	ANCESTRAL SPECIES	5	ENSGT00940000155876	ENSGT00940000154886.a.a	ENSGT00940000156489	ENSGT00940000160420	ENSGT00940000156282.a.a	ENSGT00940000154821.b	ENSGT00940000155460	ENSGT00940000157438	ENSGT00390000015757	ENSGT00940000164013	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00950000186013	ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00390000013443.d ##22	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434	ENSGT00390000000375	ENSGT00940000161430	ENSGT00940000161373	ENSGT00390000002955	ENSGT00530000063839	ENSGT00390000009531	ENSGT00390000011483	ENSGT00390000008296.b.a.a	ENSGT00390000017970	ENSGT00940000154930	ENSGT00940000153617.D
Archelosauria	ANCESTRAL SPECIES	7	ENSGT00910000144227.t	ENSGT00960000189645	ENSGT00940000156489	ENSGT00940000160420	ENSGT00940000156282.a.a	ENSGT00940000154821.b	ENSGT00940000155460	ENSGT00940000157438	ENSGT00390000015757	ENSGT00940000164013	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00950000186013	ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00390000013443.d ##22	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434	ENSGT00390000000375	ENSGT00940000161430	ENSGT00940000161373	ENSGT00390000002955	ENSGT00530000063839	ENSGT00940000164450	ENSGT00390000009531	ENSGT00390000011483	ENSGT00390000008296.b.a.a	ENSGT00390000017970	ENSGT00940000154930
Archosauria	ANCESTRAL SPECIES	31	ENSGT00940000154886.a.a	ENSGT00910000144227.t	ENSGT00960000189645	ENSGT00940000156489	ENSGT00940000160420	ENSGT00940000156282.a.a	ENSGT00940000154821.b	ENSGT00940000155460	ENSGT00940000157438	ENSGT00390000015757	ENSGT00940000164013	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00390000013443.d ##22	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434	ENSGT00390000000375	ENSGT00940000161430	ENSGT00940000161373	ENSGT00390000002955	ENSGT00530000063839	ENSGT00940000164450	ENSGT00390000009531	ENSGT00390000011483	ENSGT00390000008296.b.a.a	ENSGT00390000017970	ENSGT00940000154930
Aves	ANCESTRAL SPECIES	45	ENSGT00940000155876	ENSGT00940000154886.a.a	ENSGT00960000189645	ENSGT00940000156489	ENSGT00940000160420	ENSGT00940000156282.a.a	ENSGT00940000154821.b	ENSGT00940000155460	ENSGT00940000157438	ENSGT00390000015757	ENSGT00940000164013	ENSGT01050000244879.a.a.b.e	ENSGT00940000156896	ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00390000013443.d ##22	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434	ENSGT00390000000375	ENSGT00940000161430	ENSGT00940000161373	ENSGT00390000002955	ENSGT00530000063839	ENSGT00940000164450	ENSGT00390000009531	ENSGT00390000011483	ENSGT00390000008296.b.a.a	ENSGT00390000017970	ENSGT00940000154930
Neognathae	ANCESTRAL SPECIES	12	ENSGT00950000185125	ENSGT00940000155876	ENSGT00940000154886.a.a	ENSGT00960000189645	ENSGT00940000156489	ENSGT00940000160420	ENSGT00940000156282.a.a	ENSGT00940000154821.b	ENSGT00940000155460	ENSGT00940000157438	ENSGT00390000015757	ENSGT00940000164013	ENSGT01050000244879.a.a.b.e	ENSGT00940000156896	ENSGT00940000155397.b	ENSGT00390000013443.d ##22	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434	ENSGT00390000000375	ENSGT00940000161430	ENSGT00940000161373	ENSGT00390000002955	ENSGT00530000063839	ENSGT00940000164450	ENSGT00390000009531	ENSGT00390000011483	ENSGT00390000008296.b.a.a	ENSGT00390000017970	ENSGT00940000154930
Galloanserae	ANCESTRAL SPECIES	11	ENSGT00640000091523	ENSGT00950000185125	ENSGT00940000155876	ENSGT00940000154886.a.a	ENSGT00940000156489	ENSGT00940000160420	ENSGT00940000156282.a.a	ENSGT00940000154821.b	ENSGT00940000155460	ENSGT00940000157438	ENSGT00390000015757	ENSGT00940000164013	ENSGT01050000244879.a.a.b.e	ENSGT00940000156896	ENSGT00940000155397.b	ENSGT00390000013443.d ##22	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154396.a	ENSGT00390000000375	ENSGT00940000161373	ENSGT00390000002955	ENSGT00530000063839	ENSGT00940000164450	ENSGT00390000009531	ENSGT00390000011483	ENSGT00390000008296.b.a.a	ENSGT00390000017970	ENSGT00940000154930	ENSGT00940000153617.D
Anatidae	ANCESTRAL SPECIES	20	ENSGT00940000158126	ENSGT00640000091523	ENSGT00950000185125	ENSGT00940000155876	ENSGT00940000154886.a.a	ENSGT00940000160420	ENSGT00940000156282.a.a	ENSGT00940000154821.b	ENSGT00940000155460	ENSGT00940000157438	ENSGT00390000015757	ENSGT00940000164013	ENSGT01050000244879.a.a.b.e	ENSGT00940000156896	ENSGT00940000155397.b	ENSGT00390000013443.d ##22	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154396.a	ENSGT00390000000375	ENSGT00940000161373	ENSGT00390000002955	ENSGT00530000063839	ENSGT00940000164450	ENSGT00390000009531	ENSGT00390000011483	ENSGT00390000008296.b.a.a	ENSGT00390000017970	ENSGT00940000154930
Duck	MODERN SPECIES	4281	ENSAPLG00000012182	ENSAPLG00000025062	ENSAPLG00000017480	ENSAPLG00000012724	KANK1 (ENSAPLG00000020411)	DMRT3 (ENSAPLG00000013743)	DMRT2 (ENSAPLG00000013872)	SMARCA2 (ENSAPLG00000013873)	ENSAPLG00000015474	KCNV2 (ENSAPLG00000018126)	PUM3 (ENSAPLG00000002920)	ENSAPLG00000019362	RFX3 (ENSAPLG00000011096)	GLIS3 (ENSAPLG00000014844)	SLC1A1 (ENSAPLG00000015022)	CDC37L1 (ENSAPLG00000006614) ##22	AK3 (ENSAPLG00000006356)	RCL1 (ENSAPLG00000006031)	JAK2 (ENSAPLG00000004748)	ENSAPLG00000011419	PLGRKT (ENSAPLG00000018947)	ENSAPLG00000004669	PDCD1LG2 (ENSAPLG00000004593)	RIC1 (ENSAPLG00000004154)	ENSAPLG00000028854	ENSAPLG00000030581	ENSAPLG00000003923	MLANA (ENSAPLG00000003877)	KIAA2026 (ENSAPLG00000003748)	UHRF2 (ENSAPLG00000013042)	GLDC (ENSAPLG00000012359)
Pink-footed goose	MODERN SPECIES	226																CDC37L1 (ENSABRG00000021710) ##22	AK3 (ENSABRG00000021713)	RCL1 (ENSABRG00000021715)	JAK2 (ENSABRG00000021718)	ENSABRG00000021725	PLGRKT (ENSABRG00000021727)	ENSABRG00000021729	PDCD1LG2 (ENSABRG00000021731)	RIC1 (ENSABRG00000021746)	ERMP1 (ENSABRG00000021779)	ENSABRG00000021780	MLANA (ENSABRG00000021784)	KIAA2026 (ENSABRG00000021786)	UHRF2 (ENSABRG00000021791)	GLDC (ENSABRG00000021793)	KDM4C (ENSABRG00000021794)
Phasianidae	ANCESTRAL SPECIES	5	ENSGT00940000158126	ENSGT00640000091523	ENSGT00940000155876.e.a	ENSGT00940000154886.a.a.db.a	ENSGT00940000154886.a.a.db.b	ENSGT00940000156489	ENSGT00940000160420	ENSGT00940000156282.a.a	ENSGT00940000154821.b	ENSGT00940000155460	ENSGT00940000157438	ENSGT00390000015757	ENSGT01050000244879.a.a.b.e	ENSGT00940000156896	ENSGT00940000155397.b	ENSGT00390000013443.d ##22	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154396.a	ENSGT00940000161373	ENSGT00390000002955	ENSGT00530000063839	ENSGT00940000164450	ENSGT00390000009531	ENSGT00390000011483	ENSGT00390000008296.b.a.a	ENSGT00390000017970	ENSGT00940000154930	ENSGT00940000153617.D	ENSGT00940000155804
Japanese quail	MODERN SPECIES	699	TMEM252 (ENSCJPG00005002105)	PGM5 (ENSCJPG00005002107)	ENSCJPG00005002115	DOCK8 (ENSCJPG00005002158)	KANK1 (ENSCJPG00005002171)	DMRT1 (ENSCJPG00005002189)	DMRT3 (ENSCJPG00005002191)	DMRT2 (ENSCJPG00005002194)	SMARCA2 (ENSCJPG00005002199)	VLDLR (ENSCJPG00005002212)	KCNV2 (ENSCJPG00005003166)	PUM3 (ENSCJPG00005003170)	RFX3 (ENSCJPG00005003180)	GLIS3 (ENSCJPG00005003188)	SLC1A1 (ENSCJPG00005003195)	CDC37L1 (ENSCJPG00005003200) ##22	AK3 (ENSCJPG00005003204)	RCL1 (ENSCJPG00005003205)	JAK2 (ENSCJPG00005003214)	ENSCJPG00005003229	ENSCJPG00005003230	PDCD1LG2 (ENSCJPG00005003231)	RIC1 (ENSCJPG00005003232)	ERMP1 (ENSCJPG00005003237)	ENSCJPG00005003242	MLANA (ENSCJPG00005003245)	KIAA2026 (ENSCJPG00005003247)	UHRF2 (ENSCJPG00005003255)	GLDC (ENSCJPG00005003257)	ENSCJPG00005003260	ENSCJPG00005003265
Phasianidae_b	ANCESTRAL SPECIES	5	ENSGT00940000155897.mb.a	ENSGT00390000005250	ENSGT00940000158126	ENSGT00640000091523	ENSGT00940000155876.e.a	ENSGT00940000154886.a.a.db.a	ENSGT00940000160420	ENSGT00940000156282.a.a	ENSGT00940000154821.b	ENSGT00940000155460	ENSGT00940000157438	ENSGT00390000015757	ENSGT01050000244879.a.a.b.e	ENSGT00940000156896	ENSGT00940000155397.b	ENSGT00390000013443.d ##22	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154396.a	ENSGT00940000161373	ENSGT00390000002955	ENSGT00530000063839	ENSGT00940000164450	ENSGT00390000009531	ENSGT00390000011483	ENSGT00390000008296.b.a.a	ENSGT00390000017970	ENSGT00940000154930	ENSGT00940000153617.D	ENSGT00940000155804
Chicken	MODERN SPECIES	131	TMEM252 (ENSGALG00010011444)	PGM5 (ENSGALG00010011887)	CBWD1 (ENSGALG00010011287)	DOCK8 (ENSGALG00010011311)	KANK1 (ENSGALG00010011351)	DMRT1 (ENSGALG00010011437)	ENSGALG00010011462	DMRT2 (ENSGALG00010011482)	SMARCA2 (ENSGALG00010011808)	VLDLR (ENSGALG00010011837)	KCNV2 (ENSGALG00010010198)	PUM3 (ENSGALG00010011384)	RFX3 (ENSGALG00010011873)	GLIS3 (ENSGALG00010010147)	SLC1A1 (ENSGALG00010011937)	CDC37L1 (ENSGALG00010011133) ##22	AK3 (ENSGALG00010011143)	RCL1 (ENSGALG00010011222)	JAK2 (ENSGALG00010012833)	RLN3 (ENSGALG00010012847)	CD274 (ENSGALG00010012871)	PDCD1LG2 (ENSGALG00010013312)	RIC1 (ENSGALG00010012889)	ERMP1 (ENSGALG00010012904)	ENSGALG00010012919	MLANA (ENSGALG00010012923)	KIAA2026 (ENSGALG00010012952)	UHRF2 (ENSGALG00010012965)	GLDC (ENSGALG00010012973)	KDM4C (ENSGALG00010011253)	PTPRD (ENSGALG00010012063)
Turkey	MODERN SPECIES	1299	ENSMGAG00000022224	ENSMGAG00000005135	ENSMGAG00000018973	ENSMGAG00000017142	ENSMGAG00000020678	ENSMGAG00000019468	ENSMGAG00000005156	ENSMGAG00000021756	ENSMGAG00000016103	ENSMGAG00000002255	KCNV2 (ENSMGAG00000001039)	VLDLR (ENSMGAG00000003673)	ENSMGAG00000016991	ENSMGAG00000019982	SLC1A1 (ENSMGAG00000005250)	CDC37L1 (ENSMGAG00000005316) ##22	AK3 (ENSMGAG00000005306)	ENSMGAG00000021960	ENSMGAG00000002245	JAK2 (ENSMGAG00000005291)	ENSMGAG00000016647	ENSMGAG00000005340	PDCD1LG2 (ENSMGAG00000020864)	RIC1 (ENSMGAG00000005427)	ERMP1 (ENSMGAG00000005374)	ENSMGAG00000005367	MLANA (ENSMGAG00000005363)	KIAA2026 (ENSMGAG00000021166)	UHRF2 (ENSMGAG00000007128)	GLDC (ENSMGAG00000009587)	ENSMGAG00000003348
Neognathae_b	ANCESTRAL SPECIES	5	ENSGT00640000091523	ENSGT00940000155876	ENSGT00940000154886.a.a	ENSGT00960000189645	ENSGT00940000156489	ENSGT00940000160420	ENSGT00940000156282.a.a	ENSGT00940000154821.b	ENSGT00940000155460	ENSGT00940000157438	ENSGT00390000015757	ENSGT00940000164013	ENSGT01050000244879.a.a.b.e	ENSGT00940000156896	ENSGT00940000155397.b	ENSGT00390000013443.d ##22	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434	ENSGT00390000000375	ENSGT00940000161430	ENSGT00940000161373	ENSGT00390000002955	ENSGT00530000063839	ENSGT00940000164450	ENSGT00390000009531	ENSGT00390000011483	ENSGT00390000008296.b.a.a	ENSGT00390000017970	ENSGT00940000154930
Passeriformes	ANCESTRAL SPECIES	7	ENSGT00640000091523	ENSGT00940000155876	ENSGT00940000154886.a.a	ENSGT00960000189645	ENSGT00940000156489	ENSGT00940000160420	ENSGT00940000156282.a.a	ENSGT00940000154821.b	ENSGT00940000155460	ENSGT00940000157438	ENSGT00390000015757	ENSGT00940000162777.a.a.a.a	ENSGT01050000244879.a.a.b.e	ENSGT00940000156896	ENSGT00940000155397.b	ENSGT00390000013443.d ##22	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434	ENSGT00390000000375	ENSGT00940000161430	ENSGT00940000161373	ENSGT00390000002955	ENSGT00530000063839	ENSGT00940000164450	ENSGT00390000009531	ENSGT00390000011483	ENSGT00390000008296.b.a.a	ENSGT00390000017970	ENSGT00940000154930
Great tit	MODERN SPECIES	642	ENSPMJG00000016189	DOCK8 (ENSPMJG00000016190)	KANK1 (ENSPMJG00000016191)	DMRT1 (ENSPMJG00000016192)	DMRT2 (ENSPMJG00000016193)	SMARCA2 (ENSPMJG00000016196)	VLDLR (ENSPMJG00000016197)	KCNV2 (ENSPMJG00000016198)	PUM3 (ENSPMJG00000016199)	ENSPMJG00000016200	RFX3 (ENSPMJG00000016201)	GLIS3 (ENSPMJG00000016202)	SLC1A1 (ENSPMJG00000016203)	ENSPMJG00000016204	ENSPMJG00000016205	CDC37L1 (ENSPMJG00000016206) ##22	AK3 (ENSPMJG00000016207)	RCL1 (ENSPMJG00000016208)	JAK2 (ENSPMJG00000016210)	ENSPMJG00000016211	PLGRKT (ENSPMJG00000016212)	CD274 (ENSPMJG00000016213)	PDCD1LG2 (ENSPMJG00000016214)	RIC1 (ENSPMJG00000016216)	ERMP1 (ENSPMJG00000016217)	ENSPMJG00000016226	MLANA (ENSPMJG00000016227)	KIAA2026 (ENSPMJG00000016228)	UHRF2 (ENSPMJG00000016230)	GLDC (ENSPMJG00000016231)	KDM4C (ENSPMJG00000016232)
Passeriformes_d	ANCESTRAL SPECIES	6	ENSGT00940000155876	ENSGT00940000154886.a.a	ENSGT00960000189645	ENSGT00940000156489	ENSGT00940000160420	ENSGT00940000156282.a.a	ENSGT00940000154821.b	ENSGT00940000155460	ENSGT00940000157438	ENSGT00390000015757	ENSGT00940000162777.a.a.a.a	ENSGT01050000244879.a.a.b.e	ENSGT01100000265023	ENSGT00940000156896	ENSGT00940000155397.b	ENSGT00390000013443.d ##22	ENSGT00940000155120	ENSGT00530000063404.a.k	ENSGT00940000155640	ENSGT00940000169000	ENSGT00390000000375	ENSGT00940000161430	ENSGT00940000161373	ENSGT00390000002955	ENSGT00530000063839	ENSGT00940000164450	ENSGT00390000009531	ENSGT00390000011483	ENSGT00390000008296.b.a.a	ENSGT00390000017970	ENSGT00940000154930
Flycatcher	MODERN SPECIES	561	DMRT3 (ENSFALG00000010391)	DMRT2 (ENSFALG00000010393)	ENSFALG00000023612	SMARCA2 (ENSFALG00000010416)	VLDLR (ENSFALG00000010477)	KCNV2 (ENSFALG00000010508)	PUM3 (ENSFALG00000010509)	ENSFALG00000010512	RFX3 (ENSFALG00000010515)	ENSFALG00000027595	GLIS3 (ENSFALG00000010519)	SLC1A1 (ENSFALG00000010522)	ENSFALG00000014597	ENSFALG00000010526	ENSFALG00000010531	CDC37L1 (ENSFALG00000023426) ##22	AK3 (ENSFALG00000010543)	ENSFALG00000025956	ENSFALG00000010553	ENSFALG00000027655	JAK2 (ENSFALG00000010563)	ENSFALG00000026503	PLGRKT (ENSFALG00000010567)	ENSFALG00000010572	RIC1 (ENSFALG00000010582)	ERMP1 (ENSFALG00000010587)	ENSFALG00000010596	MLANA (ENSFALG00000028522)	KIAA2026 (ENSFALG00000010612)	UHRF2 (ENSFALG00000010614)	GLDC (ENSFALG00000010628)
Passeriformes_g	ANCESTRAL SPECIES	7	ENSGT00960000189645	ENSGT00940000156489	ENSGT00940000160420	ENSGT00940000156282.a.a	ENSGT00940000154821.b	ENSGT00940000155460	ENSGT00940000157438	ENSGT00390000015757	ENSGT00940000162777.a.a.a.a	ENSGT01050000244879.a.a.b.e	ENSGT01100000265023	ENSGT00940000156896	ENSGT00940000155397.b	ENSGT00940000155319.g.b.a.b	ENSGT00960000189358	ENSGT00390000013443.d ##22	ENSGT00940000155120	ENSGT00530000063404.a.k	ENSGT00940000155640	ENSGT00940000154434	ENSGT00940000161430	ENSGT00940000161373	ENSGT00390000002955	ENSGT00530000063839	ENSGT00940000164450	ENSGT00390000009531	ENSGT00390000011483	ENSGT00390000008296.b.a.a	ENSGT00390000017970	ENSGT00940000154930	ENSGT00940000153617.D
Medium ground finch	MODERN SPECIES	93											GLIS3 (ENSGFOG00000011299)	SLC1A1 (ENSGFOG00000011302)	ENSGFOG00000011306	ENSGFOG00000011312	ENSGFOG00000011313	CDC37L1 (ENSGFOG00000011314) ##22	AK3 (ENSGFOG00000011319)	RCL1 (ENSGFOG00000011325)	JAK2 (ENSGFOG00000011351)	CD274 (ENSGFOG00000012364)	PDCD1LG2 (ENSGFOG00000000042)	RIC1 (ENSGFOG00000000248)	ERMP1 (ENSGFOG00000000270)	ENSGFOG00000000282	MLANA (ENSGFOG00000000290)	KIAA2026 (ENSGFOG00000000299)	UHRF2 (ENSGFOG00000000326)	GLDC (ENSGFOG00000000409)	KDM4C (ENSGFOG00000000523)	PTPRD (ENSGFOG00000000568)
Passeroidea	ANCESTRAL SPECIES	23	ENSGT00960000189645	ENSGT00940000156489	ENSGT00940000160420	ENSGT00940000156282.a.a	ENSGT00940000154821.b	ENSGT00940000155460	ENSGT00940000157438	ENSGT00390000015757	ENSGT00940000162777.a.a.a.a	ENSGT01050000244879.a.a.b.e	ENSGT01100000265023	ENSGT00940000156896	ENSGT00940000155397.b	ENSGT00940000155319.g.b.a.b	ENSGT00960000189358	ENSGT00390000013443.d ##22	ENSGT00940000155120	ENSGT00530000063404.a.k	ENSGT00940000155640	ENSGT00940000154434	ENSGT00940000169000	ENSGT00940000161373	ENSGT00390000002955	ENSGT00530000063839	ENSGT00940000164450	ENSGT00390000009531	ENSGT00390000011483	ENSGT00390000008296.b.a.a	ENSGT00390000017970	ENSGT00940000154930	ENSGT00940000153617.D
Zebra finch	MODERN SPECIES	104	DMRT2 (ENSTGUG00000005515)	SMARCA2 (ENSTGUG00000005460)	VLDLR (ENSTGUG00000005386)	ENSTGUG00000005381	KCNV2 (ENSTGUG00000018853)	PUM3 (ENSTGUG00000005339)	ENSTGUG00000005327	RFX3 (ENSTGUG00000005287)	ENSTGUG00000022949	ENSTGUG00000024012	GLIS3 (ENSTGUG00000005266)	SLC1A1 (ENSTGUG00000005214)	ENSTGUG00000005203	ENSTGUG00000019342	ENSTGUG00000029693	CDC37L1 (ENSTGUG00000005189) ##22	AK3 (ENSTGUG00000005155)	RCL1 (ENSTGUG00000005138)	JAK2 (ENSTGUG00000005043)	ENSTGUG00000005041	ENSTGUG00000005033	PDCD1LG2 (ENSTGUG00000025704)	RIC1 (ENSTGUG00000005013)	ERMP1 (ENSTGUG00000004990)	ENSTGUG00000004979	MLANA (ENSTGUG00000025611)	KIAA2026 (ENSTGUG00000004976)	UHRF2 (ENSTGUG00000004941)	GLDC (ENSTGUG00000004885)	KDM4C (ENSTGUG00000004875)	ENSTGUG00000019018
Common canary	DUPLICATION
Common canary	MODERN SPECIES	8	CLASP1 (ENSSCAG00000011981)	TFCP2L1 (ENSSCAG00000012018)	ENSSCAG00000012138	INHBB (ENSSCAG00000012147)	RALB (ENSSCAG00000012158)	ENSSCAG00000012164	EPB41L5 (ENSSCAG00000012183)	PTPN4 (ENSSCAG00000012204)	TMEM177 (ENSSCAG00000012229)	MRAS (ENSSCAG00000012240)	CNTNAP5 (ENSSCAG00000012280)	GYPC (ENSSCAG00000012425)	BIN1 (ENSSCAG00000012432)	CYP27C1 (ENSSCAG00000012448)	ERCC3 (ENSSCAG00000012453)	ENSSCAG00000012460 ##22	MAP3K2 (ENSSCAG00000012489)	PECR (ENSSCAG00000012493)	TMEM169 (ENSSCAG00000012497)	XRCC5 (ENSSCAG00000012499)	MARCHF4 (ENSSCAG00000012501)	SMARCAL1 (ENSSCAG00000012512)	ENSSCAG00000012520	IGFBP2 (ENSSCAG00000012525)	ENSSCAG00000012528	ENSSCAG00000012569	ENSSCAG00000012691	RUFY4 (ENSSCAG00000012856)	ENSSCAG00000012859	ARPC2 (ENSSCAG00000012860)	AAMP (ENSSCAG00000012865)
Common canary	MODERN SPECIES	78							MLANA (ENSSCAG00000001433)	KIAA2026 (ENSSCAG00000001403)	UHRF2 (ENSSCAG00000001304)	GLDC (ENSSCAG00000001260)	ENSSCAG00000001245	GLIS3 (ENSSCAG00000001222)	SLC1A1 (ENSSCAG00000001213)	ENSSCAG00000001207	ENSSCAG00000001199	ENSSCAG00000001187 ##22	AK3 (ENSSCAG00000001174)	RCL1 (ENSSCAG00000001093)	JAK2 (ENSSCAG00000000972)	ENSSCAG00000000933	ENSSCAG00000000913	PDCD1LG2 (ENSSCAG00000000891)	RIC1 (ENSSCAG00000000523)	ERMP1 (ENSSCAG00000000280)	ENSSCAG00000000200
Neognathae_c	ANCESTRAL SPECIES	2	ENSGT00940000158126	ENSGT00640000091523	ENSGT00940000155876	ENSGT00940000154886.a.a	ENSGT00940000156489	ENSGT00940000160420	ENSGT00940000156282.a.a	ENSGT00940000154821.b	ENSGT00940000155460	ENSGT00940000157438	ENSGT00390000015757	ENSGT00940000164013	ENSGT01050000244879.a.a.b.e	ENSGT00940000156896	ENSGT00940000155397.b	ENSGT00390000013443.d ##22	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434	ENSGT00390000000375	ENSGT00940000161373	ENSGT00390000002955	ENSGT00530000063839	ENSGT00940000164450	ENSGT00390000009531	ENSGT00390000011483	ENSGT00390000008296.b.a.a	ENSGT00390000017970	ENSGT00940000154930	ENSGT00940000153617.D
Golden eagle	MODERN SPECIES	91	ENSACCG00020016750	DOCK8 (ENSACCG00020016450)	ENSACCG00020014971	ENSACCG00020014951	DMRT1 (ENSACCG00020014930)	DMRT3 (ENSACCG00020014910)	DMRT2 (ENSACCG00020014901)	SMARCA2 (ENSACCG00020014838)	VLDLR (ENSACCG00020014749)	KCNV2 (ENSACCG00020014716)	PUM3 (ENSACCG00020014700)	ENSACCG00020014683	RFX3 (ENSACCG00020014653)	GLIS3 (ENSACCG00020014613)	SLC1A1 (ENSACCG00020014593)	CDC37L1 (ENSACCG00020014575) ##22	AK3 (ENSACCG00020014563)	RCL1 (ENSACCG00020014540)	JAK2 (ENSACCG00020014493)	ENSACCG00020014475	PLGRKT (ENSACCG00020014461)	ENSACCG00020014444	PDCD1LG2 (ENSACCG00020014424)	RIC1 (ENSACCG00020014383)	ERMP1 (ENSACCG00020014143)	ENSACCG00020014001	MLANA (ENSACCG00020013991)	KIAA2026 (ENSACCG00020013976)	UHRF2 (ENSACCG00020013943)	GLDC (ENSACCG00020013912)	KDM4C (ENSACCG00020013865)
Kakapo	MODERN SPECIES	19	PTPRD (ENSSHBG00005017319)	ENSSHBG00005017356	ENSSHBG00005017358	GLDC (ENSSHBG00005017361)	UHRF2 (ENSSHBG00005017370)	KIAA2026 (ENSSHBG00005017376)	MLANA (ENSSHBG00005017380)	ENSSHBG00005017383	ERMP1 (ENSSHBG00005017385)	RIC1 (ENSSHBG00005017400)	PDCD1LG2 (ENSSHBG00005017476)	ENSSHBG00005017481	JAK2 (ENSSHBG00005017499)	RCL1 (ENSSHBG00005017541)	SLC1A1 (ENSSHBG00005017548)	CDC37L1 (ENSSHBG00005017553) ##22	AK3 (ENSSHBG00005017556)	GLIS3 (ENSSHBG00005017563)	ENSSHBG00005017571	ENSSHBG00005017578	PUM3 (ENSSHBG00005017598)	KCNV2 (ENSSHBG00005017626)	VLDLR (ENSSHBG00005017636)	SMARCA2 (ENSSHBG00005017989)	DMRT2 (ENSSHBG00005020185)	DMRT3 (ENSSHBG00005020188)	DMRT1 (ENSSHBG00005020193)	ENSSHBG00005020196	ENSSHBG00005020200	DOCK8 (ENSSHBG00005020306)	ENSSHBG00005020597
African ostrich	DUPLICATION
African ostrich	MODERN SPECIES	517																ENSSCUG00000006779 ##22
African ostrich	MODERN SPECIES	535													TOPORS (ENSSCUG00000004599)	SLC1A1 (ENSSCUG00000004590)	SPATA6L (ENSSCUG00000004585)	ENSSCUG00000004577 ##22	AK3 (ENSSCUG00000004569)	RCL1 (ENSSCUG00000004564)	JAK2 (ENSSCUG00000004554)	PLGRKT (ENSSCUG00000004547)
Australian saltwater crocodile	MODERN SPECIES	67	DOCK8 (ENSCPRG00005004968)	KANK1 (ENSCPRG00005004939)	DMRT1 (ENSCPRG00005004893)	DMRT3 (ENSCPRG00005004879)	DMRT2 (ENSCPRG00005004868)	SMARCA2 (ENSCPRG00005004803)	ENSCPRG00005004774	VLDLR (ENSCPRG00005004758)	KCNV2 (ENSCPRG00005004751)	PUM3 (ENSCPRG00005004547)	ENSCPRG00005004519	RFX3 (ENSCPRG00005004493)	GLIS3 (ENSCPRG00005004466)	SLC1A1 (ENSCPRG00005004424)	SPATA6L (ENSCPRG00005004407)	CDC37L1 (ENSCPRG00005004396) ##22	AK3 (ENSCPRG00005004395)	RCL1 (ENSCPRG00005004387)	JAK2 (ENSCPRG00005004373)	ENSCPRG00005004371	PLGRKT (ENSCPRG00005004366)	ENSCPRG00005004356	PDCD1LG2 (ENSCPRG00005004350)	RIC1 (ENSCPRG00005004338)	ERMP1 (ENSCPRG00005004304)	KIAA2026 (ENSCPRG00005004297)	UHRF2 (ENSCPRG00005004283)	GLDC (ENSCPRG00005003953)	KDM4C (ENSCPRG00005003854)	PTPRD (ENSCPRG00005003783)	TYRP1 (ENSCPRG00005003740)
Cryptodira	ANCESTRAL SPECIES	48	ENSGT00940000154886.a.a	ENSGT00960000189645	ENSGT00940000156489	ENSGT00940000160420	ENSGT00940000156282.a.a	ENSGT00940000154821.b	ENSGT00940000155460	ENSGT00940000157438	ENSGT00390000015757	ENSGT00940000164013	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00950000186013	ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00390000013443.d ##22	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434	ENSGT00390000000375	ENSGT00940000161430	ENSGT00940000161373	ENSGT00390000002955	ENSGT00530000063839	ENSGT00940000164450	ENSGT00390000009531	ENSGT00390000011483
Testudinoidea	ANCESTRAL SPECIES	7	ENSGT00940000154886.a.a	ENSGT00960000189645	ENSGT00940000156489	ENSGT00940000160420	ENSGT00940000156282.a.a	ENSGT00940000154821.b	ENSGT00940000155460	ENSGT00940000157438	ENSGT00390000015757	ENSGT00940000164013	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00950000186013	ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00390000013443.d ##22	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434	ENSGT00390000000375	ENSGT00940000161430	ENSGT00940000161373	ENSGT00390000002955	ENSGT00530000063839	ENSGT00940000164450	ENSGT00390000009531	ENSGT00940000158577	ENSGT00390000003364	ENSGT00940000156437.i	ENSGT00390000008742
Testudinidae	ANCESTRAL SPECIES	15	ENSGT00940000155876	ENSGT00940000154886.a.a.ib	ENSGT00940000156489	ENSGT00940000160420	ENSGT00940000156282.a.a	ENSGT00940000154821.b	ENSGT00940000155460	ENSGT00940000157438	ENSGT00390000015757.c	ENSGT00940000164013	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00950000186013	ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00390000013443.d ##22	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434	ENSGT00390000000375	ENSGT00940000161430	ENSGT00940000161373	ENSGT00390000002955	ENSGT00530000063839	ENSGT00390000009531	ENSGT00940000158577	ENSGT00390000003364	ENSGT00940000156437.i	ENSGT00390000008742	ENSGT00940000157487
Goode s thornscrub tortoise	MODERN SPECIES	20	ENSGEVG00005015265	DOCK8 (ENSGEVG00005015343)	KANK1 (ENSGEVG00005015437)	DMRT1 (ENSGEVG00005015585)	DMRT3 (ENSGEVG00005015865)	DMRT2 (ENSGEVG00005015890)	SMARCA2 (ENSGEVG00005015950)	KCNV2 (ENSGEVG00005016696)	ENSGEVG00005016771	ENSGEVG00005017017	RFX3 (ENSGEVG00005017166)	GLIS3 (ENSGEVG00005017217)	ENSGEVG00005017260	SLC1A1 (ENSGEVG00005017274)	SPATA6L (ENSGEVG00005017368)	CDC37L1 (ENSGEVG00005017405) ##22	AK3 (ENSGEVG00005017423)	RCL1 (ENSGEVG00005017434)	JAK2 (ENSGEVG00005017459)	ENSGEVG00005017487	PLGRKT (ENSGEVG00005017508)	CD274 (ENSGEVG00005017525)	PDCD1LG2 (ENSGEVG00005017549)	RIC1 (ENSGEVG00005017573)	ERMP1 (ENSGEVG00005017610)	MLANA (ENSGEVG00005017623)	FRMD3 (ENSGEVG00005017673)	IDNK (ENSGEVG00005017811)	UBQLN1 (ENSGEVG00005017836)	GKAP1 (ENSGEVG00005017882)	KIF27 (ENSGEVG00005017922)
Abingdon island giant tortoise	MODERN SPECIES	46															ENSCABG00000000071	CDC37L1 (ENSCABG00000000093) ##22	AK3 (ENSCABG00000000145)	RCL1 (ENSCABG00000000189)	JAK2 (ENSCABG00000000622)	ENSCABG00000004329	PLGRKT (ENSCABG00000004330)	CD274 (ENSCABG00000004333)	PDCD1LG2 (ENSCABG00000004409)	RIC1 (ENSCABG00000004424)	ERMP1 (ENSCABG00000004749)	MLANA (ENSCABG00000004750)	FRMD3 (ENSCABG00000004752)
Emydidae	ANCESTRAL SPECIES	20	ENSGT00950000185504	ENSGT00940000154886.a.a	ENSGT00960000189645	ENSGT00940000156489	ENSGT00940000160420	ENSGT00940000156282.a.a	ENSGT00940000154821.b	ENSGT00940000155460	ENSGT00940000157438	ENSGT00390000015757	ENSGT00940000164013	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00390000013443.d ##22	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434	ENSGT00390000000375	ENSGT00940000161430	ENSGT00940000161373	ENSGT00390000002955	ENSGT00530000063839	ENSGT00940000164450	ENSGT00390000009531	ENSGT00940000158577	ENSGT00390000003364	ENSGT00940000156437.i	ENSGT00390000008742
painted turtle	MODERN SPECIES	15	DOCK8 (ENSCPBG00000025439)	ENSCPBG00000025452	KANK1 (ENSCPBG00000025457)	DMRT1 (ENSCPBG00000025458)	DMRT3 (ENSCPBG00000025461)	DMRT2 (ENSCPBG00000025462)	SMARCA2 (ENSCPBG00000025463)	VLDLR (ENSCPBG00000025468)	KCNV2 (ENSCPBG00000025469)	PUM3 (ENSCPBG00000025470)	ENSCPBG00000025471	RFX3 (ENSCPBG00000025473)	GLIS3 (ENSCPBG00000025474)	SLC1A1 (ENSCPBG00000025475)	SPATA6L (ENSCPBG00000025478)	CDC37L1 (ENSCPBG00000025479) ##22	AK3 (ENSCPBG00000025480)	RCL1 (ENSCPBG00000025481)	JAK2 (ENSCPBG00000025483)	ENSCPBG00000025484	PLGRKT (ENSCPBG00000025485)	CD274 (ENSCPBG00000025486)	PDCD1LG2 (ENSCPBG00000025487)	RIC1 (ENSCPBG00000025489)	ERMP1 (ENSCPBG00000025490)	ENSCPBG00000025492	ENSCPBG00000025493	FRMD3 (ENSCPBG00000025494)	IDNK (ENSCPBG00000025495)	UBQLN1 (ENSCPBG00000025496)	GKAP1 (ENSCPBG00000025497)
Three-toed box turtle	MODERN SPECIES	50	ENSTMTG00000015924	KANK1 (ENSTMTG00000015933)	ENSTMTG00000015959	DMRT1 (ENSTMTG00000015977)	DMRT3 (ENSTMTG00000015991)	DMRT2 (ENSTMTG00000016004)	SMARCA2 (ENSTMTG00000016037)	VLDLR (ENSTMTG00000016110)	KCNV2 (ENSTMTG00000016251)	PUM3 (ENSTMTG00000016264)	ENSTMTG00000016298	RFX3 (ENSTMTG00000016347)	GLIS3 (ENSTMTG00000016537)	SLC1A1 (ENSTMTG00000016551)	SPATA6L (ENSTMTG00000016584)	CDC37L1 (ENSTMTG00000016607) ##22	AK3 (ENSTMTG00000016623)	RCL1 (ENSTMTG00000016634)	JAK2 (ENSTMTG00000016660)	ENSTMTG00000016706	PLGRKT (ENSTMTG00000016710)	CD274 (ENSTMTG00000016745)	PDCD1LG2 (ENSTMTG00000016752)	RIC1 (ENSTMTG00000016776)	ERMP1 (ENSTMTG00000016873)	ENSTMTG00000016905	ENSTMTG00000016945	FRMD3 (ENSTMTG00000016969)	IDNK (ENSTMTG00000017082)	UBQLN1 (ENSTMTG00000017089)	GKAP1 (ENSTMTG00000017106)
Chinese turtle	MODERN SPECIES	475													GLIS3 (ENSPSIG00000005966)	SLC1A1 (ENSPSIG00000007272)	ENSPSIG00000010075	CDC37L1 (ENSPSIG00000010470) ##22	AK3 (ENSPSIG00000011687)	RCL1 (ENSPSIG00000012302)	JAK2 (ENSPSIG00000012878)	PLGRKT (ENSPSIG00000015021)	CD274 (ENSPSIG00000015064)	RIC1 (ENSPSIG00000015494)	ERMP1 (ENSPSIG00000015685)	ENSPSIG00000017249	MLANA (ENSPSIG00000005246)	KIAA2026 (ENSPSIG00000005276)
Lepidosauria	ANCESTRAL SPECIES	1	ENSGT00940000155876	ENSGT00940000154886.a.a	ENSGT00940000156489	ENSGT00940000160420	ENSGT00940000156282.a.a	ENSGT00940000154821.b	ENSGT00940000155460	ENSGT00940000157438	ENSGT00390000015757	ENSGT00940000164013	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00950000186013	ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00390000013443.d ##22	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434	ENSGT00390000000375	ENSGT00940000161430	ENSGT00940000161373	ENSGT00390000002955	ENSGT00530000063839	ENSGT00390000009531	ENSGT00390000011483	ENSGT00390000008296.b.a.a	ENSGT00390000017970	ENSGT00940000154930	ENSGT00940000153617.D
Episquamata	ANCESTRAL SPECIES	6	ENSGT00940000155876	ENSGT00940000154886.a.a	ENSGT00940000156489	ENSGT00940000160420	ENSGT00940000156282.a.a	ENSGT00940000154821.b	ENSGT00940000155460	ENSGT00940000157438	ENSGT00390000015757	ENSGT00940000164013	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00950000186013	ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00390000013443.d ##22	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434	ENSGT00390000000375	ENSGT00940000161373	ENSGT00390000002955	ENSGT00530000063839	ENSGT00390000009531	ENSGT00390000011483	ENSGT00390000008296.b.a.a	ENSGT00390000017970	ENSGT00940000154930	ENSGT00940000153617.D	ENSGT00940000155804
Laterata	ANCESTRAL SPECIES	7														ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00390000013443.d ##22	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434	ENSGT00390000000375	ENSGT00940000161373	ENSGT00390000002955	ENSGT00530000063839	ENSGT00390000009531	ENSGT00390000011483	ENSGT00390000008296.b.a.a	ENSGT00390000017970	ENSGT00940000154930	ENSGT00940000153617.D	ENSGT00940000155804
Common wall lizard	MODERN SPECIES	8	PTGR1 (ENSPMRG00000021759)	TXN (ENSPMRG00000021752)	TXNDC8 (ENSPMRG00000021737)	SVEP1 (ENSPMRG00000021582)	MUSK (ENSPMRG00000021520)	LPAR1 (ENSPMRG00000021509)	TMEM215 (ENSPMRG00000021506)	ENSPMRG00000021492	NDUFB6 (ENSPMRG00000021478)	TOPORS (ENSPMRG00000021472)	RIGI (ENSPMRG00000021389)	ACO1 (ENSPMRG00000021323)	SLC1A1 (ENSPMRG00000021278)	SPATA6L (ENSPMRG00000021247)	ENSPMRG00000021237	CDC37L1 (ENSPMRG00000021219) ##22	AK3 (ENSPMRG00000021204)	RCL1 (ENSPMRG00000021189)	JAK2 (ENSPMRG00000020898)	ENSPMRG00000020840	PLGRKT (ENSPMRG00000020836)	PDCD1LG2 (ENSPMRG00000020831)	RIC1 (ENSPMRG00000020809)	ERMP1 (ENSPMRG00000020796)	MLANA (ENSPMRG00000020786)	KIAA2026 (ENSPMRG00000020779)	UHRF2 (ENSPMRG00000020766)	GLDC (ENSPMRG00000020751)	KDM4C (ENSPMRG00000020731)	ENSPMRG00000020725	PTPRD (ENSPMRG00000020631)
Argentine black and white tegu	MODERN SPECIES	25														SLC1A1 (ENSSMRG00000012291)	SPATA6L (ENSSMRG00000012298)	CDC37L1 (ENSSMRG00000012299) ##22	AK3 (ENSSMRG00000012300)	RCL1 (ENSSMRG00000012305)	JAK2 (ENSSMRG00000012306)	ENSSMRG00000012307	PLGRKT (ENSSMRG00000012308)	PDCD1LG2 (ENSSMRG00000012319)	RIC1 (ENSSMRG00000012320)	ERMP1 (ENSSMRG00000012324)	MLANA (ENSSMRG00000012325)	KIAA2026 (ENSSMRG00000012326)	ENSSMRG00000012349	GLIS3 (ENSSMRG00000012362)	RFX3 (ENSSMRG00000012376)	ENSSMRG00000012379	PUM3 (ENSSMRG00000012380)
Toxicofera	ANCESTRAL SPECIES	6	ENSGT00940000155876	ENSGT00940000154886.a.a	ENSGT00940000156489	ENSGT00940000160420	ENSGT00940000156282.a.a	ENSGT00940000154821.b	ENSGT00940000155460	ENSGT00940000157438	ENSGT00390000015757	ENSGT00940000164013	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00950000186013	ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00390000013443.d ##22	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434	ENSGT00390000000375	ENSGT00940000161373	ENSGT00390000002955	ENSGT00530000063839	ENSGT00390000009531	ENSGT00390000011483	ENSGT00390000008296.b.a.a	ENSGT00390000017970	ENSGT00940000154930	ENSGT00940000153617.D	ENSGT00940000155804
Elapidae	ANCESTRAL SPECIES	7	ENSGT00940000155876	ENSGT00940000154886.a.a	ENSGT00940000156489	ENSGT00940000160420	ENSGT00940000156282.a.a	ENSGT00940000154821.b	ENSGT00940000155460	ENSGT00940000157438	ENSGT00390000015757	ENSGT00940000164013	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00950000186013	ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00390000013443.d ##22	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00390000000375	ENSGT00940000161373	ENSGT00390000002955	ENSGT00530000063839.f	ENSGT00390000011483	ENSGT00390000008296.b.a.a	ENSGT00390000017970	ENSGT00940000154930	ENSGT01010000229860	ENSGT00940000153617.D	ENSGT00940000155804	ENSGT00530000063790.b
Elapidae_a	ANCESTRAL SPECIES	101				ENSGT00940000156489	ENSGT00940000160420	ENSGT00940000156282.a.a	ENSGT00940000154821.b	ENSGT00940000155460	ENSGT00940000157438	ENSGT00390000015757	ENSGT00940000164013	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00390000013443.d ##22	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00390000000375	ENSGT00940000161373	ENSGT00390000002955	ENSGT00530000063839.f	ENSGT00390000011483	ENSGT00390000008296.b.a.a	ENSGT00390000017970	ENSGT00940000154930.a	ENSGT01010000229860	ENSGT00940000153617.D	ENSGT00940000155804	ENSGT00530000063790.b
Acanthophiinae	ANCESTRAL SPECIES	9	ENSGT00950000185125	ENSGT00940000155876.m	ENSGT00940000154886.a.a	ENSGT00940000156489	ENSGT00940000160420	ENSGT00940000156282.a.a	ENSGT00940000154821.b	ENSGT00940000155460	ENSGT00940000157438	ENSGT00390000015757	ENSGT00940000164013	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00390000013443.d ##22	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00390000000375	ENSGT00940000161373	ENSGT00390000002955	ENSGT00530000063839.f	ENSGT00390000011483	ENSGT00390000008296.b.a.a	ENSGT00390000017970	ENSGT00940000154930.a	ENSGT01010000229860	ENSGT00940000153617.D	ENSGT00940000155804	ENSGT00530000063790.b
Eastern brown snake	MODERN SPECIES	23	ENSPTXG00000018861	ENSPTXG00000018860	DOCK8 (ENSPTXG00000018810)	KANK1 (ENSPTXG00000018808)	DMRT1 (ENSPTXG00000018807)	DMRT3 (ENSPTXG00000018806)	DMRT2 (ENSPTXG00000018805)	SMARCA2 (ENSPTXG00000018801)	VLDLR (ENSPTXG00000018796)	KCNV2 (ENSPTXG00000018795)	PUM3 (ENSPTXG00000018794)	ENSPTXG00000018793	RFX3 (ENSPTXG00000018767)	GLIS3 (ENSPTXG00000018766)	SLC1A1 (ENSPTXG00000018764)	CDC37L1 (ENSPTXG00000018763) ##22	AK3 (ENSPTXG00000018762)	RCL1 (ENSPTXG00000018760)	JAK2 (ENSPTXG00000018752)	PLGRKT (ENSPTXG00000018751)	PDCD1LG2 (ENSPTXG00000018750)	RIC1 (ENSPTXG00000018749)	ERMP1 (ENSPTXG00000018748)	KIAA2026 (ENSPTXG00000018747)	UHRF2 (ENSPTXG00000018746)	GLDC (ENSPTXG00000018745)	KDM4C (ENSPTXG00000018744)	PTPRD (ENSPTXG00000006046)
Mainland tiger snake	MODERN SPECIES	1	ENSNSUG00000018048	DOCK8 (ENSNSUG00000018049)	KANK1 (ENSNSUG00000018050)	DMRT1 (ENSNSUG00000018051)	DMRT3 (ENSNSUG00000018056)	DMRT2 (ENSNSUG00000018057)	SMARCA2 (ENSNSUG00000018108)	VLDLR (ENSNSUG00000019901)	KCNV2 (ENSNSUG00000019916)	PUM3 (ENSNSUG00000019917)	ENSNSUG00000019918	RFX3 (ENSNSUG00000019919)	GLIS3 (ENSNSUG00000019925)	SLC1A1 (ENSNSUG00000019926)	SPATA6L (ENSNSUG00000019928)	CDC37L1 (ENSNSUG00000019929) ##22	AK3 (ENSNSUG00000019930)	ENSNSUG00000019931	ENSNSUG00000019932	JAK2 (ENSNSUG00000019934)	PLGRKT (ENSNSUG00000019935)	PDCD1LG2 (ENSNSUG00000019936)	RIC1 (ENSNSUG00000019937)	ENSNSUG00000019938	ENSNSUG00000019939	KIAA2026 (ENSNSUG00000019940)	UHRF2 (ENSNSUG00000019944)	GLDC (ENSNSUG00000019946)	KDM4C (ENSNSUG00000019947)	ENSNSUG00000020021	PTPRD (ENSNSUG00000020025)
Blue-lipped sea krait	MODERN SPECIES	4192													ENSLLTG00000012730	SLC1A1 (ENSLLTG00000012737)	SPATA6L (ENSLLTG00000012755)	CDC37L1 (ENSLLTG00000012778) ##22	AK3 (ENSLLTG00000012784)
Indian cobra	MODERN SPECIES	1	ENSNNAG00000017470	KANK1 (ENSNNAG00000017462)	DMRT1 (ENSNNAG00000017439)	DMRT3 (ENSNNAG00000017425)	DMRT2 (ENSNNAG00000017421)	SMARCA2 (ENSNNAG00000016662)	VLDLR (ENSNNAG00000016101)	KCNV2 (ENSNNAG00000016029)	ENSNNAG00000015978	ENSNNAG00000015953	ENSNNAG00000015896	RFX3 (ENSNNAG00000015581)	GLIS3 (ENSNNAG00000015518)	ENSNNAG00000015513	SLC1A1 (ENSNNAG00000015451)	CDC37L1 (ENSNNAG00000015380) ##22	AK3 (ENSNNAG00000015359)	RCL1 (ENSNNAG00000015339)	JAK2 (ENSNNAG00000015311)	PLGRKT (ENSNNAG00000015298)	PDCD1LG2 (ENSNNAG00000015251)	RIC1 (ENSNNAG00000015205)	ERMP1 (ENSNNAG00000014841)	KIAA2026 (ENSNNAG00000014777)	UHRF2 (ENSNNAG00000013890)	GLDC (ENSNNAG00000013176)	KDM4C (ENSNNAG00000013058)	ENSNNAG00000013031	PTPRD (ENSNNAG00000012603)	ENSNNAG00000012559	ENSNNAG00000012517
Lizard	MODERN SPECIES	1	DMRT1 (ENSACAG00000002356)	DMRT3 (ENSACAG00000002401)	DMRT2 (ENSACAG00000002411)	SMARCA2 (ENSACAG00000002423)	VLDLR (ENSACAG00000003015)	KCNV2 (ENSACAG00000003138)	PUM3 (ENSACAG00000003174)	ENSACAG00000003227	ENSACAG00000035469	RFX3 (ENSACAG00000003262)	GLIS3 (ENSACAG00000003374)	ENSACAG00000036408	SLC1A1 (ENSACAG00000003433)	ENSACAG00000043625	SPATA6L (ENSACAG00000029209)	CDC37L1 (ENSACAG00000003578) ##22	AK3 (ENSACAG00000003605)	RCL1 (ENSACAG00000003640)	JAK2 (ENSACAG00000003673)	ENSACAG00000042874	ENSACAG00000024061	PLGRKT (ENSACAG00000003966)	PDCD1LG2 (ENSACAG00000029075)	RIC1 (ENSACAG00000003988)	ERMP1 (ENSACAG00000004052)	MLANA (ENSACAG00000004131)	KIAA2026 (ENSACAG00000004132)	UHRF2 (ENSACAG00000004142)	ENSACAG00000044974	GLDC (ENSACAG00000004393)	ENSACAG00000041498
tuatara	MODERN SPECIES	1419															SLC1A1 (ENSSPUG00000016346)	CDC37L1 (ENSSPUG00000016341) ##22	AK3 (ENSSPUG00000016335)	RCL1 (ENSSPUG00000016330)	JAK2 (ENSSPUG00000016313)	PLGRKT (ENSSPUG00000016305)	CD274 (ENSSPUG00000016298)	PDCD1LG2 (ENSSPUG00000016280)	RIC1 (ENSSPUG00000016199)	ERMP1 (ENSSPUG00000016138)	HIBADH (ENSSPUG00000016127)	ENSSPUG00000016102	HOXA11 (ENSSPUG00000016087)	ENSSPUG00000016084	HOXA9 (ENSSPUG00000016079)	HOXA7 (ENSSPUG00000016072)	HOXA6 (ENSSPUG00000016069)
Anura	ANCESTRAL SPECIES	29	ENSGT00640000091523	ENSGT00940000155876	ENSGT00940000154886.a.a	ENSGT00940000156489	ENSGT00940000160420	ENSGT00940000156282.a.a	ENSGT00940000154821.b	ENSGT00940000155460	ENSGT00940000157438	ENSGT00390000015757	ENSGT00940000164013	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00390000013443.d ##22	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434	ENSGT00390000000375	ENSGT00940000161373	ENSGT00390000002955	ENSGT00530000063839	ENSGT00390000009531	ENSGT00390000011483	ENSGT00390000008296.b.b	ENSGT00390000017970	ENSGT00940000154930	ENSGT00940000153617.D	ENSGT00940000155804
Frog	MODERN SPECIES		dock8 (ENSXETG00000001648)	kank1 (ENSXETG00000002278)	dmrt1 (ENSXETG00000002277)	dmrt3 (ENSXETG00000015285)	dmrt2 (ENSXETG00000033983)	smarca2 (ENSXETG00000015299)	vldlr (ENSXETG00000011709)	kcnv2 (ENSXETG00000011708)	pum3 (ENSXETG00000011707)	carm1p1 (ENSXETG00000036672)	crygbl.2 (ENSXETG00000048659)	rfx3 (ENSXETG00000011698)	glis3 (ENSXETG00000011692)	slc1a1 (ENSXETG00000011685)	spata6l (ENSXETG00000030483)	cdc37l1 (ENSXETG00000000595) ##22	ak3 (ENSXETG00000000588)	rcl1 (ENSXETG00000000592)	ENSXETG00000042090	jak2 (ENSXETG00000000586)	plgrkt (ENSXETG00000000587)	ENSXETG00000036720	pdcd1lg2 (ENSXETG00000040791)	ric1 (ENSXETG00000000582)	ermp1 (ENSXETG00000000577)	mlana (ENSXETG00000037374)	fxn (ENSXETG00000039175)	kiaa2026 (ENSXETG00000000574)	uhrf2 (ENSXETG00000000567)	gldc (ENSXETG00000000543)	kdm4c (ENSXETG00000000532)
Leishan spiny toad	MODERN SPECIES		ENSLLEG00000000229	ENSLLEG00000000269	ENSLLEG00000000280	SMARCA2 (ENSLLEG00000000350)	ENSLLEG00000000580	VLDLR (ENSLLEG00000000597)	KCNV2 (ENSLLEG00000000652)	PUM3 (ENSLLEG00000000665)	RFX3 (ENSLLEG00000000718)	ENSLLEG00000000868	ENSLLEG00000000876	GLIS3 (ENSLLEG00000000897)	ENSLLEG00000000928	SLC1A1 (ENSLLEG00000001013)	SPATA6L (ENSLLEG00000001082)	CDC37L1 (ENSLLEG00000001174) ##22	AK3 (ENSLLEG00000001204)	ENSLLEG00000001238	RCL1 (ENSLLEG00000001251)	ENSLLEG00000001296	JAK2 (ENSLLEG00000001323)	ENSLLEG00000001371	PLGRKT (ENSLLEG00000001384)	ENSLLEG00000001414	PDCD1LG2 (ENSLLEG00000001467)	ENSLLEG00000001500	RIC1 (ENSLLEG00000001526)	ERMP1 (ENSLLEG00000001621)	ENSLLEG00000001719	ENSLLEG00000001734	KIAA2026 (ENSLLEG00000001755)
Coelacanth	MODERN SPECIES	705											ENSLACG00000011838	GLIS3 (ENSLACG00000011383)	ENSLACG00000010250	SLC1A1 (ENSLACG00000007779)	SPATA6L (ENSLACG00000022591)	CDC37L1 (ENSLACG00000005200) ##22	AK3 (ENSLACG00000004544)	si:dkey-3h3.3 (ENSLACG00000003908)
Elephant shark	MODERN SPECIES	2221																ENSCMIG00000002366 ##22	ak3 (ENSCMIG00000002376)
Ciona	ANCESTRAL SPECIES	427																ENSGT00390000013443 #22	ENSGT00530000069064	ENSGT00940000167985
Ciona savignyi	MODERN SPECIES	276	ENSCSAVG00000006195	ENSCSAVG00000006093	ENSCSAVG00000005821	ENSCSAVG00000005656	ENSCSAVG00000005653	ENSCSAVG00000005649	ENSCSAVG00000005647	ENSCSAVG00000005639	ENSCSAVG00000005605	ENSCSAVG00000005564	ENSCSAVG00000005556	ENSCSAVG00000005553	ENSCSAVG00000005549	ENSCSAVG00000005547	ENSCSAVG00000005498	ENSCSAVG00000005364 #22	ENSCSAVG00000005359	ENSCSAVG00000005260	ENSCSAVG00000005257	ENSCSAVG00000005255	ENSCSAVG00000005252	ENSCSAVG00000005199	ENSCSAVG00000005179	ENSCSAVG00000005137	ENSCSAVG00000005024	ENSCSAVG00000005020	ENSCSAVG00000005015	ENSCSAVG00000005003	ENSCSAVG00000004992	ENSCSAVG00000004986	ENSCSAVG00000004769
Ciona intestinalis	MODERN SPECIES	12	ENSCING00000018126	ENSCING00000006433	ENSCING00000006437	ENSCING00000006439	ENSCING00000013237	ENSCING00000006443	ENSCING00000018638	ENSCING00000006447	ENSCING00000013236	ENSCING00000006450	ENSCING00000018499	ENSCING00000019321	ENSCING00000013235	ENSCING00000013233	ENSCING00000013231	ENSCING00000006469 #22	ENSCING00000006465	ENSCING00000006462	ENSCING00000013229	ENSCING00000006474	ENSCING00000006473	ENSCING00000006519	ENSCING00000006517	ENSCING00000020501	ENSCING00000021199	ENSCING00000018814	ENSCING00000022331	ENSCING00000024612	ENSCING00000006509	ENSCING00000006506	ENSCING00000006500
Ecdysozoa	ANCESTRAL SPECIES																	ENSGT00390000013443 #22
Caenorhabditis elegans	DUPLICATION
Caenorhabditis elegans	MODERN SPECIES	1	arrd-1 (WBGene00020205)	T04B8.5 (WBGene00020207)	clec-118 (WBGene00021032)	W04H10.1 (WBGene00021030)	W04H10.6 (WBGene00206417)	W04H10.5 (WBGene00206416)	W04H10.2 (WBGene00021031)	nhl-3 (WBGene00003599)	W08F4.1 (WBGene00021091)	W08F4.10 (WBGene00021099)	fbxb-34 (WBGene00021092)	W08F4.13 (WBGene00044733)	W08F4.12 (WBGene00021101)	fbxb-14 (WBGene00021098)	W08F4.3 (WBGene00021093)	cdc-37 (WBGene00021097) #22	W08F4.7 (WBGene00021096)	mlt-8 (WBGene00021095)	W08F4.5 (WBGene00021094)	C09E8.6 (WBGene00303037)	C09E8.1 (WBGene00015644)	lips-7 (WBGene00015645)	mlt-10 (WBGene00015646)	T27A1.3 (WBGene00020835)	T27A1.2 (WBGene00020834)	lgc-34 (WBGene00020836)	slc-36.2 (WBGene00020837)	mab-9 (WBGene00003106)	srh-105 (WBGene00005512)	T27A1.1 (WBGene00005324)	sms-5 (WBGene00021075)
Caenorhabditis elegans	MODERN SPECIES	1	T02H6.3 (WBGene00020173)	T02H6.4 (WBGene00020174)	T02H6.5 (WBGene00020175)	T02H6.6 (WBGene00020176)	T02H6.7 (WBGene00020177)	T02H6.8 (WBGene00020178)	T02H6.10 (WBGene00020180)	T02H6.9 (WBGene00020179)	Y39F10C.1 (WBGene00021457)	Y39F10C.3 (WBGene00206368)	sri-46 (WBGene00005558)	sri-45 (WBGene00005557)	sdz-24 (WBGene00019495)	frpr-14 (WBGene00019496)	K07E8.7 (WBGene00019498)	K07E8.6 (WBGene00019497) #22	T04B8.1 (WBGene00020203)	arrd-1 (WBGene00020205)	T04B8.5 (WBGene00020207)	clec-118 (WBGene00021032)	W04H10.1 (WBGene00021030)	W04H10.6 (WBGene00206417)	W04H10.5 (WBGene00206416)	W04H10.2 (WBGene00021031)	nhl-3 (WBGene00003599)	W08F4.1 (WBGene00021091)	W08F4.10 (WBGene00021099)	fbxb-34 (WBGene00021092)	W08F4.13 (WBGene00044733)	W08F4.12 (WBGene00021101)	fbxb-14 (WBGene00021098)
Fruitfly	MODERN SPECIES	18	CG18171 (FBgn0035262)	CG12035 (FBgn0035263)	Oseg4 (FBgn0035264)	PIG-Wb (FBgn0035265)	Gk2 (FBgn0035266)	CG13921 (FBgn0035267)	Cht2 (FBgn0022702)	CG8001 (FBgn0035268)	Dhc62B (FBgn0013811)	CG13933 (FBgn0035270)	PolD2 (FBgn0027903)	CG2021 (FBgn0035271)	mRpL46 (FBgn0035272)	alpha-Spec (FBgn0250789)	dlt (FBgn0024510)	Cdc37 (FBgn0011573) #22	CG12020 (FBgn0035273)	Patj (FBgn0067864)	JTBR (FBgn0025820)	CG42676 (FBgn0261562)	GV1 (FBgn0027790)	Cpr62Ba (FBgn0035279)	Cpr62Bb (FBgn0035280)	Cpr62Bc (FBgn0035281)	CNMa (FBgn0035282)	CG12024 (FBgn0035283)	Rap1 (FBgn0004636)	HBS1 (FBgn0042712)	CG12025 (FBgn0035285)	CG13924 (FBgn0035286)	dre4 (FBgn0002183)