Acanthomorphata	ANCESTRAL SPECIES	7	ENSGT00940000156110.c.a #7	ENSGT00390000006580 #8	ENSGT00940000164710 #9	ENSGT00530000063651.b #10	ENSGT00950000183044.a.a.b #11	ENSGT00620000087966.a #12	ENSGT00390000009517 #13	ENSGT00390000006223 #14	ENSGT00390000005700 #15	ENSGT00940000156613 #16	ENSGT00940000156816 #17	ENSGT01030000234575.c.a.a.a.a.b.b #18	ENSGT00940000174567 #19	ENSGT00940000156145 #21	ENSGT00940000160947	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00940000164930.a #24	ENSGT00940000155693.a.b #25	ENSGT01030000234625.B.d.c.a #26	ENSGT01030000234625.B.d.d.b.a ##26	ENSGT00390000010925 #27	ENSGT00940000162910 #28	ENSGT00940000162939	ENSGT00940000155747.g.a #29	ENSGT00390000012060 #30	ENSGT00410000025698.b #31	ENSGT00940000153433.A.f #32	ENSGT00940000154790.b.a.b #33	ENSGT00930000151014.q #34	ENSGT00940000159815 #35
Euacanthomorphacea	ANCESTRAL SPECIES	11	ENSGT00390000006580 #8	ENSGT00940000164710 #9	ENSGT00530000063651.b #10	ENSGT00950000183044.a.a.b #11	ENSGT00620000087966.a #12	ENSGT00390000009517 #13	ENSGT00390000006223 #14	ENSGT00390000005700 #15	ENSGT00940000156613 #16	ENSGT00940000156816 #17	ENSGT01030000234575.c.a.a.a.a.b.b #18	ENSGT00940000174567 #19	ENSGT01030000234575.c.a.a.a.a.b.a.a.b ##20	ENSGT00940000156145 #21	ENSGT00940000160947	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00940000164930.a #24	ENSGT00940000155693.a.b #25	ENSGT01030000234625.B.d.c.a #26	ENSGT01030000234625.B.d.d.b.a ##26	ENSGT00390000010925 #27	ENSGT00940000162910 #28	ENSGT00940000162939	ENSGT00940000155747.g.a #29	ENSGT00390000012060 #30	ENSGT00410000025698.b #31	ENSGT00940000153433.A.f #32	ENSGT00940000154790.b.a.b #33	ENSGT00930000151014.q #34	ENSGT00940000159815 #35
Percomorphaceae	ANCESTRAL SPECIES	13	ENSGT00940000156110.c.a #7	ENSGT00390000006580 #8	ENSGT00940000164710 #9	ENSGT00530000063651.b #10	ENSGT00950000183044.a.a.b #11	ENSGT00620000087966.a #12	ENSGT00390000009517 #13	ENSGT00390000006223 #14	ENSGT00390000005700 #15	ENSGT00940000156613 #16	ENSGT00940000156816 #17	ENSGT01030000234575.c.a.a.a.a.b.b.a #18	ENSGT00940000174567 #19	ENSGT01030000234575.c.a.a.a.a.b.a.a.b ##20	ENSGT00940000156145 #21	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00940000164930.a #24	ENSGT00940000155693.a.b #25	ENSGT01030000234625.B.d.c.a #26	ENSGT01030000234625.B.d.d.b.a ##26	ENSGT00390000010925 #27	ENSGT00940000162910 #28	ENSGT00940000162939	ENSGT00940000155747.g.a #29	ENSGT00390000012060 #30	ENSGT00410000025698.b #31	ENSGT00940000153433.A.f #32	ENSGT00940000154790.b.a.b #33	ENSGT00930000151014.q #34	ENSGT00940000159815 #35
Percomorphaceae_B	ANCESTRAL SPECIES	11	ENSGT00940000164710 #9	ENSGT00530000063651.b #10	ENSGT00950000183044.a.a.b #11	ENSGT00620000087966.a #12	ENSGT00390000009517 #13	ENSGT00390000006223 #14	ENSGT00390000005700 #15	ENSGT00940000156613 #16	ENSGT00940000156816 #17	ENSGT01030000234575.c.a.a.a.a.b.b.a #18	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.b ##20	ENSGT01030000234575.c.a.a.a.a.b.b.b ##20	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.a #20	ENSGT01030000234575.c.a.a.a.a.b.a.a.b ##20	ENSGT00940000156145 #21	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00940000164930.a #24	ENSGT00940000155693.a.b #25	ENSGT01030000234625.B.d.c.a #26	ENSGT01030000234625.B.d.d.b.a ##26	ENSGT00390000010925 #27	ENSGT00940000162910 #28	ENSGT00940000162939	ENSGT00940000155747.g.a #29	ENSGT00390000012060 #30	ENSGT00410000025698.b #31	ENSGT00940000153433.A.f #32	ENSGT00940000154790.b.a.b #33	ENSGT00930000151014.q #34	ENSGT00940000159815 #35
Percomorphaceae_C	ANCESTRAL SPECIES	12	ENSGT00940000164710 #9	ENSGT00530000063651.b #10	ENSGT00950000183044.a.a.b #11	ENSGT00620000087966.a #12	ENSGT00390000009517 #13	ENSGT00390000006223 #14	ENSGT00390000005700 #15	ENSGT00940000156613 #16	ENSGT00940000156816 #17	ENSGT01030000234575.c.a.a.a.a.b.b.a #18	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.b ##20	ENSGT01030000234575.c.a.a.a.a.b.b.b ##20	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.a #20	ENSGT01030000234575.c.a.a.a.a.b.a.a.b ##20	ENSGT00940000156145 #21	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00940000164930.a #24	ENSGT00940000155693.a.b #25	ENSGT01030000234625.B.d.c.a #26	ENSGT01030000234625.B.d.d.b.a ##26	ENSGT00390000010925 #27	ENSGT00940000162910 #28	ENSGT00940000162939	ENSGT00940000155747.g.a #29	ENSGT00390000012060 #30	ENSGT00410000025698.b #31	ENSGT00940000153433.A.f #32	ENSGT00940000154790.b.a.b #33	ENSGT00930000151014.q #34	ENSGT00940000159815 #35
Eupercaria	ANCESTRAL SPECIES	9	ENSGT00940000164710 #9	ENSGT00530000063651.b #10	ENSGT00950000183044.a.a.b #11	ENSGT00620000087966.a #12	ENSGT00390000009517 #13	ENSGT00390000006223 #14	ENSGT00390000005700 #15	ENSGT00940000156613 #16	ENSGT00940000156816 #17	ENSGT01030000234575.c.a.a.a.a.b.b.a #18	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.b ##20	ENSGT01030000234575.c.a.a.a.a.b.b.b ##20	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.a #20	ENSGT01030000234575.c.a.a.a.a.b.a.a.b ##20	ENSGT00940000156145 #21	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00940000164930.a #24	ENSGT00940000155693.a.b #25	ENSGT01030000234625.B.d.c.a #26	ENSGT00390000010925 #27	ENSGT00940000162910 #28	ENSGT00940000162939	ENSGT00940000155747.g.a #29	ENSGT00390000012060 #30	ENSGT00410000025698.b #31	ENSGT00940000153433.A.f #32	ENSGT00940000154790.b.a.b #33	ENSGT00930000151014.q #34	ENSGT00940000159815 #35	ENSGT00940000155454.w.a.b ##37
Eupecaria_A	ANCESTRAL SPECIES	10	ENSGT00940000164710 #9	ENSGT00530000063651.b #10	ENSGT00950000183044.a.a.b #11	ENSGT00620000087966.a #12	ENSGT00390000009517 #13	ENSGT00390000006223 #14	ENSGT00390000005700 #15	ENSGT00940000156613 #16	ENSGT00940000156816 #17	ENSGT01030000234575.c.a.a.a.a.b.b.a #18	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.b ##20	ENSGT01030000234575.c.a.a.a.a.b.b.b ##20	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.a #20	ENSGT01030000234575.c.a.a.a.a.b.a.a.b ##20	ENSGT00940000156145 #21	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00940000164930.a #24	ENSGT00940000155693.a.b #25	ENSGT01030000234625.B.d.c.a #26	ENSGT00390000010925 #27	ENSGT00940000162910 #28	ENSGT00940000162939	ENSGT00940000155747.g.a #29	ENSGT00390000012060 #30	ENSGT00410000025698.b #31	ENSGT00940000153433.A.f #32	ENSGT00940000154790.b.a.b #33	ENSGT00930000151014.q #34	ENSGT00940000159815 #35	ENSGT00940000155454.w.a.b ##37
Eupecaria_B	ANCESTRAL SPECIES	11	ENSGT00940000164710 #9	ENSGT00530000063651.b #10	ENSGT00950000183044.a.a.b #11	ENSGT00620000087966.a #12	ENSGT00390000009517 #13	ENSGT00390000006223 #14	ENSGT00390000005700 #15	ENSGT00940000156613 #16	ENSGT00940000156816 #17	ENSGT01030000234575.c.a.a.a.a.b.b.a #18	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.b ##20	ENSGT01030000234575.c.a.a.a.a.b.b.b ##20	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.a #20	ENSGT01030000234575.c.a.a.a.a.b.a.a.b ##20	ENSGT00940000156145 #21	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00940000164930.a #24	ENSGT00940000155693.a.b #25	ENSGT01030000234625.B.d.c.a #26	ENSGT00390000010925 #27	ENSGT00940000162910 #28	ENSGT00940000162939	ENSGT00940000155747.g.a #29	ENSGT00390000012060 #30	ENSGT00410000025698.b #31	ENSGT00940000153433.A.f #32	ENSGT00940000154790.b.a.b #33	ENSGT00930000151014.q #34	ENSGT00940000159815 #35	ENSGT00940000155454.w.a.b ##37
Perciformes	ANCESTRAL SPECIES	12	ENSGT00940000156110.c.a #7	ENSGT00390000006580 #8	ENSGT00940000164710 #9	ENSGT00530000063651.b #10	ENSGT00950000183044.a.a.b #11	ENSGT00620000087966.a #12	ENSGT00390000009517 #13	ENSGT00390000006223 #14	ENSGT00390000005700 #15	ENSGT00940000156613 #16	ENSGT00940000156816 #17	ENSGT01030000234575.c.a.a.a.a.b.b.a #18	ENSGT00940000174567 #19	ENSGT01030000234575.c.a.a.a.a.b.a.a.b ##20	ENSGT00940000156145 #21	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00940000164930.a #24	ENSGT00940000155693.a.b #25	ENSGT01030000234625.B.d.c.a #26	ENSGT00390000010925 #27	ENSGT00940000162910 #28	ENSGT00940000162939	ENSGT00940000155747.g.a #29	ENSGT00390000012060 #30	ENSGT00410000025698.b #31	ENSGT00940000153433.A.f #32	ENSGT00940000154790.b.a.b #33	ENSGT00930000151014.q #34	ENSGT00940000159815 #35	ENSGT00940000155454.w.a.a #36
Perciformes_a	ANCESTRAL SPECIES	10	ENSGT00940000156110.c.a #7	ENSGT00390000006580 #8	ENSGT00940000164710 #9	ENSGT00530000063651.b #10	ENSGT00950000183044.a.a.b #11	ENSGT00620000087966.a #12	ENSGT00390000009517 #13	ENSGT00390000006223 #14	ENSGT00390000005700 #15	ENSGT00940000156613 #16	ENSGT00940000156816 #17	ENSGT01030000234575.c.a.a.a.a.b.b.a #18	ENSGT00940000174567 #19	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.a #20	ENSGT00940000156145 #21	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00940000164930.a #24	ENSGT00940000155693.a.b #25	ENSGT01030000234625.B.d.c.a #26	ENSGT00390000010925 #27	ENSGT00940000162910 #28	ENSGT00940000155747.g.a #29	ENSGT00390000012060 #30	ENSGT00410000025698.b #31	ENSGT00940000153433.A.f #32	ENSGT00940000154790.b.a.b #33	ENSGT00930000151014.q #34	ENSGT00940000159815 #35	ENSGT00940000155454.w.a.a #36	ENSGT00940000155454.w.b #37
Channel bull blenny	MODERN SPECIES	14	tmed8 (ENSCGOG00000016344) #10	NOXRED1 (ENSCGOG00000013560) #11	gskip (ENSCGOG00000013661) #13	npc2.1 (ENSCGOG00000013663) #14	isca2 (ENSCGOG00000013669) #15	EML5 (ENSCGOG00000013694) #16	ttc8 (ENSCGOG00000014174) #17	ENSCGOG00000014670 #18	ENSCGOG00000014671 #19	ENSCGOG00000014672 ##20	ENSCGOG00000014674	ENSCGOG00000014676 #20	NEK9 (ENSCGOG00000014695) #21	ENSCGOG00000015174 #20	ENSCGOG00000015177 #20	ENSCGOG00000015179 #22	ENSCGOG00000015182 #23	ENSCGOG00000015200	ENSCGOG00000015204 #24	JDP2 (ENSCGOG00000015205) #25	FLVCR2 (ENSCGOG00000015208) ##26	ERG28 (ENSCGOG00000015304) #27	ENSCGOG00000015308 #28	tgfb3 (ENSCGOG00000015422) #29	IFT43 (ENSCGOG00000015428) #30	GPATCH2L (ENSCGOG00000015440) #31	ENSCGOG00000015443	ESRRB (ENSCGOG00000015447) #32	prox2 (ENSCGOG00000015475) #33	dlst (ENSCGOG00000015478) #34	RPS6KL1 (ENSCGOG00000015734) #35
Pike perch	MODERN SPECIES	5	ENTPD5 (ENSSLUG00000009327)	bbof1 (ENSSLUG00000009317)	aldh6a1 (ENSSLUG00000008832) #7	gstz1 (ENSSLUG00000008752) #8	zgc:163014 (ENSSLUG00000008741) #9	ENSSLUG00000008737 #11	ATG2B (ENSSLUG00000008502) #12	gskip (ENSSLUG00000008474) #13	npc2.1 (ENSSLUG00000008460) #14	isca2 (ENSSLUG00000008453) #15	EML5 (ENSSLUG00000008424) #16	ttc8 (ENSSLUG00000007907) #17	ENSSLUG00000007868 #18	ENSSLUG00000007860 #19	NEK9 (ENSSLUG00000007818) #21	ENSSLUG00000007803 #22	ENSSLUG00000007796 #23	ENSSLUG00000007777 #23	ENSSLUG00000007754	ENSSLUG00000007737 #24	JDP2 (ENSSLUG00000007731) #25	FLVCR2 (ENSSLUG00000007709) #26	ERG28 (ENSSLUG00000007698) #27	ENSSLUG00000007653 #28	tgfb3 (ENSSLUG00000007633) #29	IFT43 (ENSSLUG00000007621) #30	ENSSLUG00000007616	GPATCH2L (ENSSLUG00000007608) #31	ESRRB (ENSSLUG00000007571) #32	prox2 (ENSSLUG00000007548) #33	dlst (ENSSLUG00000006732) #34
Cottioidei	ANCESTRAL SPECIES	8	ENSGT00940000154427.A	ENSGT00940000156110.c.a #7	ENSGT00390000006580 #8	ENSGT00940000164710 #9	ENSGT00530000063651.b #10	ENSGT00950000183044.a.a.b #11	ENSGT00620000087966.a #12	ENSGT00390000009517 #13	ENSGT00390000006223 #14	ENSGT00390000005700 #15	ENSGT00940000156613 #16	ENSGT00940000156816 #17	ENSGT01030000234575.c.a.a.a.a.b.b.a #18	ENSGT01030000234575.c.a.a.a.a.b.a.a.b ##20	ENSGT00940000156145 #21	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00940000164930.a #24	ENSGT00940000155693.a.b #25	ENSGT01030000234625.B.d.c.a #26	ENSGT00390000010925 #27	ENSGT00940000162910 #28	ENSGT00940000162939	ENSGT00940000155747.g.a #29	ENSGT00390000012060 #30	ENSGT00410000025698.b #31	ENSGT00940000153433.A.f #32	ENSGT00940000154790.b.a.b #33	ENSGT00930000151014.q #34	ENSGT00940000159815 #35	ENSGT00940000155454.w.a.a #36
Lumpfish	MODERN SPECIES	14	coq6 (ENSCLMG00005015794)	ENTPD5 (ENSCLMG00005015790)	ENSCLMG00005015789	aldh6a1 (ENSCLMG00005015788) #7	gstz1 (ENSCLMG00005015751) #8	zgc:163014 (ENSCLMG00005015746) #9	tmed8 (ENSCLMG00005015743) #10	NOXRED1 (ENSCLMG00005015741) #11	ATG2B (ENSCLMG00005015730) #12	gskip (ENSCLMG00005015720) #13	npc2.1 (ENSCLMG00005015719) #14	isca2 (ENSCLMG00005015717) #15	ttc8 (ENSCLMG00005015714) #17	ENSCLMG00005015711 #18	NEK9 (ENSCLMG00005015709) #21	ENSCLMG00005015702 #22	ENSCLMG00005015701 #23	ENSCLMG00005015699 #23	ENSCLMG00005015697	ENSCLMG00005015619 #24	JDP2 (ENSCLMG00005015616) #25	FLVCR2 (ENSCLMG00005015510) ##26	ERG28 (ENSCLMG00005015509) #27	ENSCLMG00005015507 #28	ENSCLMG00005015505	tgfb3 (ENSCLMG00005015502) #29	IFT43 (ENSCLMG00005015500) #30	GPATCH2L (ENSCLMG00005015496) #31	ESRRB (ENSCLMG00005015485) #32	prox2 (ENSCLMG00005015484) #33	dlst (ENSCLMG00005015474) #34
Eupecaria_C	ANCESTRAL SPECIES	8	ENSGT00940000164710 #9	ENSGT00530000063651.b #10	ENSGT00950000183044.a.a.b #11	ENSGT00620000087966.a #12	ENSGT00390000009517 #13	ENSGT00390000006223 #14	ENSGT00390000005700 #15	ENSGT00940000156613 #16	ENSGT00940000156816 #17	ENSGT01030000234575.c.a.a.a.a.b.b.a #18	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.b ##20	ENSGT01030000234575.c.a.a.a.a.b.b.b ##20	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.a #20	ENSGT01030000234575.c.a.a.a.a.b.a.a.b ##20	ENSGT00940000156145 #21	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00940000164930.a #24	ENSGT00940000155693.a.b #25	ENSGT01030000234625.B.d.d.b.a ##26	ENSGT00390000010925 #27	ENSGT00940000162910 #28	ENSGT00940000177781	ENSGT00940000155747.g.a #29	ENSGT00390000012060 #30	ENSGT00410000025698.b #31	ENSGT00940000153433.A.f #32	ENSGT00940000154790.b.a.b #33	ENSGT00930000151014.q #34	ENSGT00940000159815 #35	ENSGT00940000155454.w.a.b ##37
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	16	ENSGT00940000164710 #9	ENSGT00530000063651.b #10	ENSGT00950000183044.a.a.b #11	ENSGT00620000087966.a #12	ENSGT00390000009517 #13	ENSGT00390000006223 #14	ENSGT00390000005700 #15	ENSGT00940000156613 #16	ENSGT00940000156816 #17	ENSGT01030000234575.c.a.a.a.a.b.b.a #18	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.b ##20	ENSGT01030000234575.c.a.a.a.a.b.b.b ##20	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.a #20	ENSGT01030000234575.c.a.a.a.a.b.a.a.b ##20	ENSGT00940000156145 #21	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00940000164930.a #24	ENSGT00940000155693.a.b #25	ENSGT01030000234625.B.d.d.b.a ##26	ENSGT00390000010925 #27	ENSGT00940000162910 #28	ENSGT00940000155747.g.a #29	ENSGT00390000012060 #30	ENSGT00410000025698.b #31	ENSGT00940000153433.A.f #32	ENSGT00940000154790.b.a.b #33	ENSGT00930000151014.q #34	ENSGT00940000159815 #35	ENSGT00940000155454.w.a.b ##37	ENSGT00940000155454.w.a.a #36
Large yellow croaker	MODERN SPECIES	495	aldh6a1 (ENSLCRG00005017273) #7	gstz1 (ENSLCRG00005017343) #8	zgc:163014 (ENSLCRG00005017345) #9	tmed8 (ENSLCRG00005017347) #10	ATG2B (ENSLCRG00005017352) #12	gskip (ENSLCRG00005017360) #13	npc2.1 (ENSLCRG00005017361) #14	isca2 (ENSLCRG00005017363) #15	EML5 (ENSLCRG00005017364) #16	ttc8 (ENSLCRG00005017368) #17	ENSLCRG00005017370 ##20	ENSLCRG00005017371 ##20	ENSLCRG00005017374 #20	ENSLCRG00005017375 ##20	NEK9 (ENSLCRG00005017376) #21	ENSLCRG00005017377 #22	MLH3 (ENSLCRG00005017378) #23	ENSLCRG00005017379 #24	JDP2 (ENSLCRG00005017390) #25	FLVCR2 (ENSLCRG00005017394) ##26	ERG28 (ENSLCRG00005017404) #27	ENSLCRG00005017425 #28	tgfb3 (ENSLCRG00005017482) #29	IFT43 (ENSLCRG00005017486) #30	GPATCH2L (ENSLCRG00005017489) #31	esrrb (ENSLCRG00005017492) #32	prox2 (ENSLCRG00005017493) #33	dlst (ENSLCRG00005017494) #34	RPS6KL1 (ENSLCRG00005017499) #35	ENSLCRG00005017501 ##37	ENSLCRG00005017502 #36
European seabass	MODERN SPECIES	2	ENTPD5 (ENSDLAG00005011835)	BBOF1 (ENSDLAG00005011826)	aldh6a1 (ENSDLAG00005011476) #7	gstz1 (ENSDLAG00005033795) #8	zgc:163014 (ENSDLAG00005033476) #9	tmed8 (ENSDLAG00005010779) #10	NOXRED1 (ENSDLAG00005010764) #11	ENSDLAG00005010692 #12	ENSDLAG00005030109 #15	ENSDLAG00005009980 #16	ENSDLAG00005027218 #17	ENSDLAG00005009750 #18	ENSDLAG00005026725 #20	ENSDLAG00005009693 ##20	ENSDLAG00005009493 #21	ENSDLAG00005009475 #22	ENSDLAG00005009467 #23	ENSDLAG00005009432 #24	JDP2 (ENSDLAG00005031903) #25	FLVCR2 (ENSDLAG00005009385) ##26	ERG28 (ENSDLAG00005034440) #27	ENSDLAG00005009162 #28	tgfb3 (ENSDLAG00005028845) #29	IFT43 (ENSDLAG00005009135) #30	GPATCH2L (ENSDLAG00005009129) #31	ESRRB (ENSDLAG00005009106) #32	prox2 (ENSDLAG00005009097) #33	dlst (ENSDLAG00005008982) #34	RPS6KL1 (ENSDLAG00005008969) #35	ENSDLAG00005008961 ##37	ENSDLAG00005008957 #36
Gilthead seabream	MODERN SPECIES	7	ATG2B (ENSSAUG00010005053) #12	gskip (ENSSAUG00010005050) #13	npc2.1 (ENSSAUG00010005049) #14	isca2 (ENSSAUG00010005048) #15	EML5 (ENSSAUG00010004876) #16	ttc8 (ENSSAUG00010004793) #17	ENSSAUG00010004788 #18	ENSSAUG00010004786 ##20	ENSSAUG00010004784 ##20	ENSSAUG00010004781 #20	ENSSAUG00010004776 #20	ENSSAUG00010004773 #20	ENSSAUG00010004771 ##20	NEK9 (ENSSAUG00010004754) #21	ENSSAUG00010004744	ENSSAUG00010004741 #22	ENSSAUG00010004735 #23	ENSSAUG00010004732	ENSSAUG00010004727 #24	JDP2 (ENSSAUG00010004723) #25	FLVCR2 (ENSSAUG00010004003) #26	ERG28 (ENSSAUG00010003977) #27	ENSSAUG00010003969 #28	ENSSAUG00010003967	tgfb3 (ENSSAUG00010003964) #29	IFT43 (ENSSAUG00010003957) #30	GPATCH2L (ENSSAUG00010003952) #31	ESRRB (ENSSAUG00010003939) #32	prox2 (ENSSAUG00010003934) #33	dlst (ENSSAUG00010003627) #34	RPS6KL1 (ENSSAUG00010003609) #35
Ballan wrasse	MODERN SPECIES	29	gstz1 (ENSLBEG00000001373) #8	zgc:163014 (ENSLBEG00000001345) #9	tmed8 (ENSLBEG00000001312) #10	NOXRED1 (ENSLBEG00000001306) #11	ATG2B (ENSLBEG00000001237) #12	ENSLBEG00000001213 #12	gskip (ENSLBEG00000001173) #13	npc2.1 (ENSLBEG00000001160) #14	isca2 (ENSLBEG00000001106) #15	EML5 (ENSLBEG00000000868) #16	ttc8 (ENSLBEG00000000763) #17	ENSLBEG00000000754 #18	ENSLBEG00000000747 ##20	ENSLBEG00000000741 ##20	NEK9 (ENSLBEG00000000718) #21	ENSLBEG00000000708 #22	ENSLBEG00000000695 #23	ENSLBEG00000000673 #24	JDP2 (ENSLBEG00000000660) #25	ENSLBEG00000000640 ##26	FLVCR2 (ENSLBEG00000000549) #26	ERG28 (ENSLBEG00000000516) #27	ENSLBEG00000000473 #28	tgfb3 (ENSLBEG00000000436) #29	IFT43 (ENSLBEG00000000378) #30	GPATCH2L (ENSLBEG00000000361) #31	ESRRB (ENSLBEG00000000330) #32	prox2 (ENSLBEG00000000305) #33	dlst (ENSLBEG00000000267) #34	RPS6KL1 (ENSLBEG00000000250) #35	ENSLBEG00000000245 #36
Tetraodontidae	ANCESTRAL SPECIES	3	ENSGT00390000006580 #8	ENSGT00940000164710 #9	ENSGT00530000063651.b #10	ENSGT00620000087966.a #12	ENSGT00390000009517 #13	ENSGT00390000006223 #14	ENSGT00390000005700 #15	ENSGT00940000156613 #16	ENSGT00940000156816 #17	ENSGT01030000234575.c.a.a.a.a.b.b.a #18	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.b ##20	ENSGT01030000234575.c.a.a.a.a.b.b.b ##20	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.a #20	ENSGT01030000234575.c.a.a.a.a.b.a.a.b ##20	ENSGT00940000156145 #21	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00940000164930.a #24	ENSGT00940000155693.a.b #25	ENSGT01030000234625.B.d.d.a ##26	ENSGT00390000010925 #27	ENSGT00940000162910 #28	ENSGT00940000155747.g.a #29	ENSGT00390000012060 #30	ENSGT00410000025698.b #31	ENSGT00940000153433.A.f #32	ENSGT00940000154790.b.a.b #33	ENSGT00930000151014.q #34	ENSGT00940000159815 #35	ENSGT00940000155454.w.a.b ##37	ENSGT00940000155454.w.b #37
Fugu	MODERN SPECIES	11	bbof1 (ENSTRUG00000018223)	aldh6a1 (ENSTRUG00000018226) #7	gstz1 (ENSTRUG00000032191) #8	zgc:163014 (ENSTRUG00000019659) #9	tmed8 (ENSTRUG00000018236) #10	ATG2B (ENSTRUG00000018239) #12	gskip (ENSTRUG00000018266) #13	npc2.1 (ENSTRUG00000018269) #14	isca2 (ENSTRUG00000028337) #15	ttc8 (ENSTRUG00000018291) #17	ENSTRUG00000018294 #18	ENSTRUG00000023246 ##20	ENSTRUG00000032404 ##20	ENSTRUG00000026423 #20	NEK9 (ENSTRUG00000018297) #21	ENSTRUG00000025329 #22	ENSTRUG00000018306 #23	TMED10 (ENSTRUG00000018311)	ENSTRUG00000018314 #24	JDP2 (ENSTRUG00000029600) #25	FLVCR2 (ENSTRUG00000018328) ##26	ERG28 (ENSTRUG00000032681) #27	ENSTRUG00000018337 #28	tgfb3 (ENSTRUG00000023926) #29	IFT43 (ENSTRUG00000018345) #30	GPATCH2L (ENSTRUG00000018346) #31	ESRRB (ENSTRUG00000018347) #32	prox2 (ENSTRUG00000023052) #33	dlst (ENSTRUG00000018357) #34	RPS6KL1 (ENSTRUG00000015530) #35	ENSTRUG00000015523 ##37
Tetraodon	MODERN SPECIES	1	ENTPD5 (ENSTNIG00000017389)	bbof1 (ENSTNIG00000017390)	aldh6a1 (ENSTNIG00000017391) #7	gstz1 (ENSTNIG00000017392) #8	zgc:163014 (ENSTNIG00000017393) #9	tmed8 (ENSTNIG00000017394) #10	ATG2B (ENSTNIG00000017395) #12	ENSTNIG00000017396 #12	gskip (ENSTNIG00000017397) #13	npc2.1 (ENSTNIG00000017398) #14	isca2 (ENSTNIG00000017399) #15	EML5 (ENSTNIG00000017400) #16	ENSTNIG00000000369	ENSTNIG00000017401 ##20	NEK9 (ENSTNIG00000017402) #21	ENSTNIG00000017403 #22	ENSTNIG00000017404 #23	ENSTNIG00000017405 #24	JDP2 (ENSTNIG00000017406) #25	FLVCR2 (ENSTNIG00000017407) ##26	ERG28 (ENSTNIG00000017408) #27	ENSTNIG00000017409 #28	tgfb3 (ENSTNIG00000017410) #29	IFT43 (ENSTNIG00000017411) #30	GPATCH2L (ENSTNIG00000017412) #31	ESRRB (ENSTNIG00000017413) #32	dlst (ENSTNIG00000017415) #34	prox2 (ENSTNIG00000017414) #33	dlst (ENSTNIG00000017416) #34	RPS6KL1 (ENSTNIG00000017417) #35	ENSTNIG00000017418 ##37
Percomorphaceae_D	ANCESTRAL SPECIES	10	ENSGT00530000063651.b #10	ENSGT00950000183044.a.a.b #11	ENSGT00620000087966.a #12	ENSGT00390000009517 #13	ENSGT00390000006223 #14	ENSGT00390000005700 #15	ENSGT00940000156613 #16	ENSGT00940000156816 #17	ENSGT01030000234575.c.a.a.a.a.b.b.a #18	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.b ##20	ENSGT01030000234575.c.a.a.a.a.b.b.b ##20	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.a #20	ENSGT01030000234575.c.a.a.a.a.b.a.a.b ##20	ENSGT00940000156145 #21	ENSGT00970000197206	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00940000164930.a #24	ENSGT00940000155693.a.b #25	ENSGT01030000234625.B.d.c.a #26	ENSGT01030000234625.B.d.d.b.a ##26	ENSGT00390000010925 #27	ENSGT00940000162910 #28	ENSGT00940000155747.g.a #29	ENSGT00390000012060 #30	ENSGT00410000025698.b #31	ENSGT00940000153433.A.f #32	ENSGT00940000154790.b.a.b #33	ENSGT00930000151014.q #34	ENSGT00940000159815 #35	ENSGT00940000155454.w.a.b ##37
Carangaria	ANCESTRAL SPECIES	10	ENSGT00530000063651.b #10	ENSGT00950000183044.a.a.b #11	ENSGT00620000087966.a #12	ENSGT00390000009517 #13	ENSGT00390000006223 #14	ENSGT00390000005700 #15	ENSGT00940000156613 #16	ENSGT00940000156816 #17	ENSGT01030000234575.c.a.a.a.a.b.b.a #18	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.b ##20	ENSGT01030000234575.c.a.a.a.a.b.b.b ##20	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.a #20	ENSGT01030000234575.c.a.a.a.a.b.a.a.b ##20	ENSGT00940000156145 #21	ENSGT00970000197206	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00940000164930.a #24	ENSGT00940000155693.a.b #25	ENSGT01030000234625.B.d.c.a #26	ENSGT01030000234625.B.d.d.b.a ##26	ENSGT00390000010925 #27	ENSGT00940000162910 #28	ENSGT00940000155747.g.a #29	ENSGT00390000012060 #30	ENSGT00410000025698.b #31	ENSGT00940000153433.A.f #32	ENSGT00940000154790.b.a.b #33	ENSGT00930000151014.q #34	ENSGT00940000159815 #35	ENSGT00940000155454.w.a.b ##37
Pleuronectoidei	ANCESTRAL SPECIES	5	ENSGT00940000164710 #9	ENSGT00530000063651.b #10	ENSGT00950000183044.a.a.b #11	ENSGT00620000087966.a #12	ENSGT00390000009517 #13	ENSGT00390000006223 #14	ENSGT00390000005700 #15	ENSGT00940000156613 #16	ENSGT00940000156816 #17	ENSGT01030000234575.c.a.a.a.a.b.b.a #18	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.b ##20	ENSGT01030000234575.c.a.a.a.a.b.b.b ##20	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.a #20	ENSGT01030000234575.c.a.a.a.a.b.a.a.b ##20	ENSGT00940000156145 #21	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00940000164930.a #24	ENSGT00940000155693.a.b #25	ENSGT01030000234625.B.d.c.a #26	ENSGT01030000234625.B.d.d.b.a ##26	ENSGT00390000010925 #27	ENSGT00940000162910 #28	ENSGT00940000155747.g.a #29	ENSGT00390000012060 #30	ENSGT00410000025698.b #31	ENSGT00940000153433.A.f #32	ENSGT00940000154790.b.a.b #33	ENSGT00930000151014.q #34	ENSGT00940000159815 #35	ENSGT00940000155454.w.a.a #36
Tongue sole	MODERN SPECIES		ENSCSEG00000000689 #37	OLFM4 (ENSCSEG00000000680) #36	RPS6KL1 (ENSCSEG00000000673) #35	dlst (ENSCSEG00000000659) #34	prox2 (ENSCSEG00000000653) #33	ESRRB (ENSCSEG00000000639) #32	GPATCH2L (ENSCSEG00000000629) #31	IFT43 (ENSCSEG00000000620) #30	tgfb3 (ENSCSEG00000000606) #29	EML5 (ENSCSEG00000000603) #16	ttc8 (ENSCSEG00000000589) #17	ENSCSEG00000000602 #18	ENSCSEG00000000586 #19	ENSCSEG00000000582 ##20	NEK9 (ENSCSEG00000000555) #21	ENSCSEG00000000548 #22	ENSCSEG00000000543 #23	ENSCSEG00000000541 #24	JDP2 (ENSCSEG00000000539) #25	FLVCR2 (ENSCSEG00000000535) ##26	ERG28 (ENSCSEG00000000527) #27	ENSCSEG00000000524 #28	ENSCSEG00000000518	ENSCSEG00000000517 #16	ENSCSEG00000000470 #16	isca2 (ENSCSEG00000000464) #15	npc2.1 (ENSCSEG00000000425) #14	gskip (ENSCSEG00000000416) #13	ATG2B (ENSCSEG00000000401) #12	tmed8 (ENSCSEG00000000389) #10	zgc:163014 (ENSCSEG00000000383) #9
Turbot	MODERN SPECIES	8	zgc:163014 (ENSSMAG00000003977) #9	tmed8 (ENSSMAG00000003995) #10	NOXRED1 (ENSSMAG00000004004) #11	ENSSMAG00000004020 #12	gskip (ENSSMAG00000004108) #13	npc2.1 (ENSSMAG00000004121) #14	isca2 (ENSSMAG00000004340) #15	ENSSMAG00000004349 #16	ENSSMAG00000004472 #17	ENSSMAG00000034211 #18	ENSSMAG00000004547 ##20	ENSSMAG00000030338 ##20	ENSSMAG00000026527 #20	ENSSMAG00000026437 ##20	ENSSMAG00000004624 #21	ENSSMAG00000025652 #22	ENSSMAG00000004726 #23	ENSSMAG00000004752 #24	JDP2 (ENSSMAG00000004762) #25	ENSSMAG00000032870 #26	FLVCR2 (ENSSMAG00000004773) ##26	ERG28 (ENSSMAG00000031469) #27	ENSSMAG00000004813 #28	tgfb3 (ENSSMAG00000004837) #29	IFT43 (ENSSMAG00000004865) #30	GPATCH2L (ENSSMAG00000004907) #31	ESRRB (ENSSMAG00000004937) #32	prox2 (ENSSMAG00000004975) #33	dlst (ENSSMAG00000004993) #34	RPS6KL1 (ENSSMAG00000024937) #35	LRRC74A (ENSSMAG00000005061)
Carangaria_A	ANCESTRAL SPECIES	4	ENSGT00530000063651.b #10	ENSGT00950000183044.a.a.b #11	ENSGT00620000087966.a #12	ENSGT00390000009517 #13	ENSGT00390000006223 #14	ENSGT00390000005700 #15	ENSGT00940000156613 #16	ENSGT00940000156816 #17	ENSGT01030000234575.c.a.a.a.a.b.b.a #18	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.b ##20	ENSGT01030000234575.c.a.a.a.a.b.b.b ##20	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.a #20	ENSGT01030000234575.c.a.a.a.a.b.a.a.b ##20	ENSGT00940000156145 #21	ENSGT00970000197206	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00940000164930.a #24	ENSGT00940000155693.a.b #25	ENSGT01030000234625.B.d.d.b.a ##26	ENSGT00390000010925 #27	ENSGT00940000162910 #28	ENSGT00940000155747.g.a #29	ENSGT00390000012060 #30	ENSGT00410000025698.b #31	ENSGT00940000153433.A.f #32	ENSGT00940000154790.b.a.b #33	ENSGT00930000151014.q #34	ENSGT00940000159815 #35	ENSGT00940000155454.w.a.b ##37	ENSGT00940000155454.w.a.a #36
Seriola	ANCESTRAL SPECIES	3	ENSGT00530000063651.b #10	ENSGT00950000183044.a.a.b #11	ENSGT00620000087966.a #12	ENSGT00390000009517 #13	ENSGT00390000006223 #14	ENSGT00390000005700 #15	ENSGT00940000156613 #16	ENSGT00940000156816 #17	ENSGT01030000234575.c.a.a.a.a.b.b.a #18	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.b ##20	ENSGT01030000234575.c.a.a.a.a.b.b.b ##20	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.a.i #20	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.a.j #20	ENSGT01030000234575.c.a.a.a.a.b.a.a.b ##20	ENSGT00940000156145 #21	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00940000164930.a #24	ENSGT00940000155693.a.b #25	ENSGT01030000234625.B.d.d.b.a ##26	ENSGT00390000010925 #27	ENSGT00940000162910 #28	ENSGT00940000155747.g.a #29	ENSGT00390000012060 #30	ENSGT00410000025698.b #31	ENSGT00940000153433.A.f #32	ENSGT00940000154790.b.a.b #33	ENSGT00930000151014.q #34	ENSGT00940000159815 #35	ENSGT00940000155454.w.a.b ##37	ENSGT00940000155454.w.a.a #36
Yellowtail amberjack	MODERN SPECIES	2965	zgc:163014 (ENSSLDG00000020292) #9	tmed8 (ENSSLDG00000020311) #10	NOXRED1 (ENSSLDG00000020324) #11	ATG2B (ENSSLDG00000020346) #12	gskip (ENSSLDG00000020492) #13	npc2.1 (ENSSLDG00000020547) #14	isca2 (ENSSLDG00000020710) #15	EML5 (ENSSLDG00000020733) #16	ttc8 (ENSSLDG00000020875) #17	ENSSLDG00000020949 #18	ENSSLDG00000020965 ##20	ENSSLDG00000020974 ##20	ENSSLDG00000020985 #20	ENSSLDG00000021010 ##20	NEK9 (ENSSLDG00000021020) #21	ENSSLDG00000021055 #22	ENSSLDG00000021066 #23	ENSSLDG00000021099 #24	JDP2 (ENSSLDG00000021117) #25	FLVCR2 (ENSSLDG00000021129) ##26	ERG28 (ENSSLDG00000021171) #27	ENSSLDG00000021195 #28	tgfb3 (ENSSLDG00000021239) #29	IFT43 (ENSSLDG00000021252) #30	GPATCH2L (ENSSLDG00000021264) #31	ESRRB (ENSSLDG00000021283) #32	prox2 (ENSSLDG00000021320) #33	dlst (ENSSLDG00000021344) #34	RPS6KL1 (ENSSLDG00000021428) #35	ENSSLDG00000021445 ##37	OLFM4 (ENSSLDG00000021454) #36
Greater amberjack	MODERN SPECIES	62	tmed8 (ENSSDUG00000002850) #10	NOXRED1 (ENSSDUG00000002862) #11	ATG2B (ENSSDUG00000002905) #12	npc2.1 (ENSSDUG00000003084) #14	gskip (ENSSDUG00000003108) #13	isca2 (ENSSDUG00000003113) #15	EML5 (ENSSDUG00000003133) #16	ttc8 (ENSSDUG00000003280) #17	ENSSDUG00000003343 #18	ENSSDUG00000003365 ##20	ENSSDUG00000003378 ##20	ENSSDUG00000003387 #20	ENSSDUG00000003403 #20	ENSSDUG00000003431 ##20	NEK9 (ENSSDUG00000003442) #21	ENSSDUG00000003471 #22	ENSSDUG00000003495 #23	ENSSDUG00000003517	ENSSDUG00000003536 #24	JDP2 (ENSSDUG00000003556) #25	FLVCR2 (ENSSDUG00000003576) ##26	ERG28 (ENSSDUG00000003602) #27	ENSSDUG00000003617 #28	tgfb3 (ENSSDUG00000003655) #29	IFT43 (ENSSDUG00000003660) #30	GPATCH2L (ENSSDUG00000003664) #31	ESRRB (ENSSDUG00000003682) #32	prox2 (ENSSDUG00000003704) #33	dlst (ENSSDUG00000003729) #34	RPS6KL1 (ENSSDUG00000003829) #35	ENSSDUG00000003867 ##37
Barramundi perch	MODERN SPECIES	110	zgc:163014 (ENSLCAG00010020450) #9	tmed8 (ENSLCAG00010020440) #10	NOXRED1 (ENSLCAG00010020432) #11	ATG2B (ENSLCAG00010020189) #12	gskip (ENSLCAG00010020154) #13	npc2.1 (ENSLCAG00010020153) #14	isca2 (ENSLCAG00010020151) #15	EML5 (ENSLCAG00010020149) #16	ttc8 (ENSLCAG00010020110) #17	ENSLCAG00010020089 #18	ENSLCAG00010020083 ##20	ENSLCAG00010020079 #20	ENSLCAG00010020076 #20	NEK9 (ENSLCAG00010020050) #21	ENSLCAG00010020031	ENSLCAG00010020028 #22	ENSLCAG00010019998 #23	ENSLCAG00010019980 #24	JDP2 (ENSLCAG00010019974) #25	FLVCR2 (ENSLCAG00010019962) ##26	ERG28 (ENSLCAG00010019950) #27	ENSLCAG00010019793 #28	tgfb3 (ENSLCAG00010019758) #29	IFT43 (ENSLCAG00010019754) #30	GPATCH2L (ENSLCAG00010019744) #31	ESRRB (ENSLCAG00010019726) #32	prox2 (ENSLCAG00010019720) #33	dlst (ENSLCAG00010019684) #34	RPS6KL1 (ENSLCAG00010019672) #35	ENSLCAG00010019662 #37	LRRC74A (ENSLCAG00010019651)
Anabantaria	ANCESTRAL SPECIES	10	ENSGT00530000063651.b #10	ENSGT00950000183044.a.a.b #11	ENSGT00620000087966.a #12	ENSGT00390000009517 #13	ENSGT00390000006223 #14	ENSGT00390000005700 #15	ENSGT00940000156613 #16	ENSGT00940000156816 #17	ENSGT01030000234575.c.a.a.a.a.b.b.a #18	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.b ##20	ENSGT01030000234575.c.a.a.a.a.b.b.b ##20	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.a #20	ENSGT01030000234575.c.a.a.a.a.b.a.a.b ##20	ENSGT00940000156145 #21	ENSGT00970000197206	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00940000164930.a #24	ENSGT00940000155693.a.b #25	ENSGT01030000234625.B.d.c.a #26	ENSGT01030000234625.B.d.d.b.a ##26	ENSGT00390000010925 #27	ENSGT00940000162910 #28	ENSGT00940000155747.g.a #29	ENSGT00390000012060 #30	ENSGT00410000025698.b #31	ENSGT00940000153433.A.f #32	ENSGT00940000154790.b.a.b #33	ENSGT00930000151014.q #34	ENSGT00940000159815 #35	ENSGT00940000155454.w.a.b ##37
Zig-zag eel	MODERN SPECIES	14	NOXRED1 (ENSMAMG00000004903) #11	ENSMAMG00000004929 #12	gskip (ENSMAMG00000026129) #13	npc2.1 (ENSMAMG00000005085) #14	isca2 (ENSMAMG00000005486) #15	ENSMAMG00000005497 #16	ENSMAMG00000005570 #17	ENSMAMG00000005642 #18	ENSMAMG00000026483 ##20	ENSMAMG00000005684 ##20	ENSMAMG00000028014 #19	ENSMAMG00000005693 #20	ENSMAMG00000005703 #20	ENSMAMG00000005739 ##20	ENSMAMG00000005772 #21	ACYP1 (ENSMAMG00000025112) #22	ENSMAMG00000005799 #23	ENSMAMG00000005809 #24	JDP2 (ENSMAMG00000005831) #25	FLVCR2 (ENSMAMG00000005852) #26	ENSMAMG00000027957 ##26	ERG28 (ENSMAMG00000027458) #27	ENSMAMG00000005926 #28	tgfb3 (ENSMAMG00000005975) #29	IFT43 (ENSMAMG00000005983) #30	GPATCH2L (ENSMAMG00000005997) #31	ESRRB (ENSMAMG00000006014) #32	prox2 (ENSMAMG00000006036) #33	dlst (ENSMAMG00000025145) #34	RPS6KL1 (ENSMAMG00000006095) #35	ENSMAMG00000006115 ##37
Anabantoidei	ANCESTRAL SPECIES	9	ENSGT00940000164710 #9	ENSGT00530000063651.b #10	ENSGT00950000183044.a.a.b #11	ENSGT00620000087966.a #12	ENSGT00390000009517 #13	ENSGT00390000006223 #14	ENSGT00390000005700 #15	ENSGT00940000156613 #16	ENSGT00940000156816 #17	ENSGT01030000234575.c.a.a.a.a.b.b.a #18	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.b ##20	ENSGT01030000234575.c.a.a.a.a.b.b.b ##20	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.a #20	ENSGT00940000156145 #21	ENSGT00970000197206	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00940000164930.a #24	ENSGT00940000155693.a.b #25	ENSGT01030000234625.B.d.c.a #26	ENSGT01030000234625.B.d.d.b.a ##26	ENSGT00390000010925 #27	ENSGT00940000162910 #28	ENSGT00940000155747.g.a #29	ENSGT00390000012060 #30	ENSGT00410000025698.b #31	ENSGT00940000153433.A.f #32	ENSGT00940000154790.b.a.b #33	ENSGT00930000151014.q #34	ENSGT00940000159815 #35	ENSGT00940000155454.w.a.b ##37
Climbing perch	MODERN SPECIES	3	ENSATEG00000000615 #12	gskip (ENSATEG00000000818) #13	npc2.1 (ENSATEG00000025317) #14	isca2 (ENSATEG00000000858) #15	ENSATEG00000000968 #16	ENSATEG00000001185 #17	ENSATEG00000001153 #18	ENSATEG00000027730 ##20	ENSATEG00000001235 ##20	ENSATEG00000027230 ##20	ENSATEG00000001274 #20	ENSATEG00000001247 ##20	ENSATEG00000001315 #21	ENSATEG00000026844	ENSATEG00000001325	ACYP1 (ENSATEG00000025454) #22	ENSATEG00000001351 #23	JDP2 (ENSATEG00000001383) #25	ENSATEG00000001397 #26	FLVCR2 (ENSATEG00000001418) ##26	ERG28 (ENSATEG00000001439) #27	ENSATEG00000001482 #28	tgfb3 (ENSATEG00000001502) #29	IFT43 (ENSATEG00000001549) #30	tgfb3 (ENSATEG00000006139) #29	GPATCH2L (ENSATEG00000001600) #31	ESRRB (ENSATEG00000001610) #32	prox2 (ENSATEG00000001654) #33	dlst (ENSATEG00000001662) #34	RPS6KL1 (ENSATEG00000001668) #35	ENSATEG00000029867 ##37
Siamese fighting fish	MODERN SPECIES	12	bbof1 (ENSBSLG00000025582)	aldh6a1 (ENSBSLG00000025453) #7	gstz1 (ENSBSLG00000025003) #8	tmed8 (ENSBSLG00000024977) #10	ATG2B (ENSBSLG00000024902) #12	gskip (ENSBSLG00000024891) #13	isca2 (ENSBSLG00000024881) #15	npc2.1 (ENSBSLG00000024862) #14	ENSBSLG00000024748 #16	ttc8 (ENSBSLG00000024681) #17	ENSBSLG00000024673 #18	ENSBSLG00000024646 #20	ENSBSLG00000024629 #20	ENSBSLG00000024625 #19	NEK9 (ENSBSLG00000024595) #21	ENSBSLG00000024567 #22	ENSBSLG00000024442 #24	JDP2 (ENSBSLG00000024411) #25	FLVCR2 (ENSBSLG00000024264) ##26	ERG28 (ENSBSLG00000024257) #27	ENSBSLG00000024202 #28	tgfb3 (ENSBSLG00000024183) #29	IFT43 (ENSBSLG00000024176) #30	ENSBSLG00000024171	ESRRB (ENSBSLG00000024105) #32	prox2 (ENSBSLG00000024093) #33	dlst (ENSBSLG00000024073) #34	RPS6KL1 (ENSBSLG00000024065) #35	ENSBSLG00000023997 ##37	ENSBSLG00000023985 #36	ENSBSLG00000023983 #37
Ovalentaria	ANCESTRAL SPECIES	10	ENSGT00940000164710 #9	ENSGT00530000063651.b #10	ENSGT00950000183044.a.a.b #11	ENSGT00620000087966.a #12	ENSGT00390000009517 #13	ENSGT00390000006223 #14	ENSGT00390000005700 #15	ENSGT00940000156613 #16	ENSGT00940000156816 #17	ENSGT01030000234575.c.a.a.a.a.b.b.a #18	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.b ##20	ENSGT01030000234575.c.a.a.a.a.b.b.b ##20	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.a #20	ENSGT01030000234575.c.a.a.a.a.b.a.a.b ##20	ENSGT00940000156145 #21	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00940000164930.a #24	ENSGT00940000155693.a.b #25	ENSGT01030000234625.B.d.c.a #26	ENSGT01030000234625.B.d.d.b.a ##26	ENSGT00390000010925 #27	ENSGT00940000162910 #28	ENSGT00940000162939	ENSGT00940000155747.g.a #29	ENSGT00390000012060 #30	ENSGT00410000025698.b #31	ENSGT00940000153433.A.f #32	ENSGT00940000154790.b.a.b #33	ENSGT00930000151014.q #34	ENSGT00940000159815 #35
Ovalentaria_B	ANCESTRAL SPECIES	18	ENSGT00940000164710 #9	ENSGT00530000063651.b #10	ENSGT00950000183044.a.a.b #11	ENSGT00620000087966.a #12	ENSGT00390000009517 #13	ENSGT00390000006223 #14	ENSGT00390000005700 #15	ENSGT00940000156613 #16	ENSGT00940000156816 #17	ENSGT01030000234575.c.a.a.a.a.b.b.a #18	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.b ##20	ENSGT01030000234575.c.a.a.a.a.b.b.b ##20	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.a #20	ENSGT01030000234575.c.a.a.a.a.b.a.a.b ##20	ENSGT00940000156145 #21	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00940000164930.a #24	ENSGT00940000155693.a.b #25	ENSGT01030000234625.B.d.c.a #26	ENSGT01030000234625.B.d.d.b.a ##26	ENSGT00390000010925 #27	ENSGT00940000162910 #28	ENSGT00940000162939	ENSGT00940000155747.g.a #29	ENSGT00390000012060 #30	ENSGT00410000025698.b #31	ENSGT00940000153433.A.f #32	ENSGT00940000154790.b.a.b #33	ENSGT00930000151014.q #34	ENSGT00940000159815 #35
Cichlidae	ANCESTRAL SPECIES	22	ENSGT00390000006580 #8	ENSGT00940000164710 #9	ENSGT00530000063651.b #10	ENSGT00950000183044.a.a.b #11	ENSGT00620000087966.a #12	ENSGT00390000009517 #13	ENSGT00390000006223 #14	ENSGT00390000005700 #15	ENSGT00940000156613.h #16	ENSGT00940000156816 #17	ENSGT01030000234575.c.a.a.a.a.b.b.a #18	ENSGT00940000174567 #19	ENSGT01030000234575.c.a.a.a.a.b.b.b ##20	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.a #20	ENSGT00940000156145 #21	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00940000164930.a #24	ENSGT00940000155693.a.b #25	ENSGT01030000234625.B.d.c.a #26	ENSGT01030000234625.B.d.d.b.a ##26	ENSGT00390000010925 #27	ENSGT00940000162910 #28	ENSGT00940000177781	ENSGT00940000155747.g.a #29	ENSGT00390000012060 #30	ENSGT00410000025698.b #31	ENSGT00940000153433.A.f #32	ENSGT00940000154790.b.a.b #33	ENSGT00930000151014.q #34	ENSGT00940000159815 #35
Pseudocrenilabrinae	ANCESTRAL SPECIES	8	ENSGT00390000009517 #13	ENSGT00390000006223 #14	ENSGT00390000005700 #15	ENSGT00940000156613.h #16	ENSGT00940000156816 #17	ENSGT01030000234575.c.a.a.a.a.b.b.a #18	ENSGT00940000174567 #19	ENSGT00990000208419.a	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.a.c.a #20	ENSGT01030000234575.c.a.a.a.a.b.b.b.d.b ##20	ENSGT01030000234575.c.a.a.a.a.b.b.b.d.a ##20	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.a.d #20	ENSGT01030000234575.c.a.a.a.a.b.b.b.c.b ##20	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.a.c.b #20	ENSGT00940000156145 #21	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00940000164930.a #24	ENSGT00940000155693.a.b #25	ENSGT01030000234625.B.d.c.a #26	ENSGT01030000234625.B.d.d.b.a ##26	ENSGT00390000010925 #27	ENSGT00940000162910 #28	ENSGT00940000177781	ENSGT00940000155747.g.a #29	ENSGT00390000012060 #30	ENSGT00410000025698.b #31	ENSGT00940000153433.A.f #32	ENSGT00940000154790.b.a.b #33	ENSGT00930000151014.q #34	ENSGT00940000159815 #35
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	6	ENSGT00620000087966.a #12	ENSGT00390000009517 #13	ENSGT00390000006223 #14	ENSGT00390000005700 #15	ENSGT00940000156613.h #16	ENSGT00940000156816 #17	ENSGT01030000234575.c.a.a.a.a.b.b.a #18	ENSGT00940000174567 #19	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.a.c.a #20	ENSGT01030000234575.c.a.a.a.a.b.b.b.d.b ##20	ENSGT01030000234575.c.a.a.a.a.b.b.b.d.a ##20	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.a.d #20	ENSGT01030000234575.c.a.a.a.a.b.b.b.c.b ##20	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.a.c.b #20	ENSGT00940000156145 #21	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00940000164930.a #24	ENSGT00940000155693.a.b #25	ENSGT01030000234625.B.d.c.a #26	ENSGT01030000234625.B.d.d.b.a ##26	ENSGT00390000010925 #27	ENSGT00940000162910 #28	ENSGT00940000177781	ENSGT00940000155747.g.a #29	ENSGT00390000012060 #30	ENSGT00410000025698.b #31	ENSGT00940000153433.A.f #32	ENSGT00940000154790.b.a.b #33	ENSGT00930000151014.q #34	ENSGT00940000159815 #35
Haplochromini	ANCESTRAL SPECIES	7	ENSGT00950000183044.a.a.b #11	ENSGT00620000087966.a #12	ENSGT00390000009517 #13	ENSGT00390000006223 #14	ENSGT00390000005700 #15	ENSGT00940000156613.h #16	ENSGT00940000156816 #17	ENSGT01030000234575.c.a.a.a.a.b.b.a #18	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.b ##20	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.a.c.a #20	ENSGT01030000234575.c.a.a.a.a.b.b.b.d.b ##20	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.a.d #20	ENSGT01030000234575.c.a.a.a.a.b.b.b.c.b ##20	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.a.c.b #20	ENSGT00940000156145 #21	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00940000164930.a #24	ENSGT00940000155693.a.b #25	ENSGT01030000234625.B.d.c.a #26	ENSGT01030000234625.B.d.d.b.a ##26	ENSGT00390000010925 #27	ENSGT00940000162910 #28	ENSGT00940000177781	ENSGT00940000155747.g.a #29	ENSGT00390000012060 #30	ENSGT00410000025698.b #31	ENSGT00940000153433.A.f #32	ENSGT00940000154790.b.a.b #33	ENSGT00930000151014.q #34	ENSGT00940000159815 #35
Burton s mouthbrooder	MODERN SPECIES	285	tmed8 (ENSHBUG00000019613) #10	NOXRED1 (ENSHBUG00000019593) #11	ATG2B (ENSHBUG00000019549) #12	gskip (ENSHBUG00000019220) #13	npc2.1 (ENSHBUG00000019206) #14	isca2 (ENSHBUG00000019196) #15	EML5 (ENSHBUG00000019180) #16	ttc8 (ENSHBUG00000019056) #17	ENSHBUG00000018964 #18	ENSHBUG00000018947 ##20	ENSHBUG00000018926 #20	ENSHBUG00000018906 ##20	ENSHBUG00000018894 ##20	ENSHBUG00000018865 #20	NEK9 (ENSHBUG00000018851) #21	ENSHBUG00000018771 #22	MLH3 (ENSHBUG00000018766) #23	ENSHBUG00000018749 #24	JDP2 (ENSHBUG00000018738) #25	FLVCR2 (ENSHBUG00000018722) ##26	ERG28 (ENSHBUG00000018687) #27	ENSHBUG00000018667 #28	tgfb3 (ENSHBUG00000018621) #29	IFT43 (ENSHBUG00000018591) #30	GPATCH2L (ENSHBUG00000018530) #31	ESRRB (ENSHBUG00000018505) #32	prox2 (ENSHBUG00000018457) #33	dlst (ENSHBUG00000018444) #34	RPS6KL1 (ENSHBUG00000018411) #35	ENSHBUG00000000936 #37	LRRC74A (ENSHBUG00000018359)
Haplochromini_A	ANCESTRAL SPECIES	7	ENSGT00620000087966.a #12	ENSGT00390000009517 #13	ENSGT00390000006223 #14	ENSGT00390000005700 #15	ENSGT00940000156613.h #16	ENSGT00940000156816 #17	ENSGT01030000234575.c.a.a.a.a.b.b.a #18	ENSGT00940000174567 #19	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.b ##20	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.a.c.a #20	ENSGT01030000234575.c.a.a.a.a.b.b.b.d.b ##20	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.a.d #20	ENSGT01030000234575.c.a.a.a.a.b.b.b.c.b ##20	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.a.c.b #20	ENSGT00940000156145 #21	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00940000164930.a #24	ENSGT00940000155693.a.b #25	ENSGT01030000234625.B.d.c.a #26	ENSGT00390000010925 #27	ENSGT00940000162910 #28	ENSGT00940000177781	ENSGT00940000155747.g.a #29	ENSGT00390000012060 #30	ENSGT00410000025698.b #31	ENSGT00940000153433.A.f #32	ENSGT00940000154790.b.a.b #33	ENSGT00930000151014.q #34	ENSGT00940000159815 #35	ENSGT00940000155454.w.a.a #36
Haplochromini_B	ANCESTRAL SPECIES	13	ENSGT00940000175915	ENSGT00620000087966.a #12	ENSGT00390000009517 #13	ENSGT00390000006223 #14	ENSGT00390000005700 #15	ENSGT00940000156613.h #16	ENSGT00940000156816 #17	ENSGT01030000234575.c.a.a.a.a.b.b.a #18	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.b ##20	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.a.c.a #20	ENSGT01030000234575.c.a.a.a.a.b.b.b.d.b ##20	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.a.d #20	ENSGT01030000234575.c.a.a.a.a.b.b.b.c.b ##20	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.a.c.b #20	ENSGT00940000156145 #21	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00940000164930.a #24	ENSGT00940000155693.a.b #25	ENSGT01030000234625.B.d.c.a #26	ENSGT00390000010925 #27	ENSGT00940000162910 #28	ENSGT00940000177781	ENSGT00940000155747.g.a #29	ENSGT00390000012060 #30	ENSGT00410000025698.b #31	ENSGT00940000153433.A.f #32	ENSGT00940000154790.b.a.b #33	ENSGT00930000151014.q #34	ENSGT00940000159815 #35	ENSGT00940000155454.w.a.a #36
Eastern happy	MODERN SPECIES	10	tmed8 (ENSACLG00000023624) #10	ATG2B (ENSACLG00000023637) #12	gskip (ENSACLG00000023830) #13	npc2.1 (ENSACLG00000023844) #14	isca2 (ENSACLG00000023953) #15	EML5 (ENSACLG00000023969) #16	ttc8 (ENSACLG00000024073) #17	ENSACLG00000024117 #18	ENSACLG00000024128 ##20	ENSACLG00000024140 #20	ENSACLG00000024144 ##20	ENSACLG00000024146 #20	ENSACLG00000024153 ##20	ENSACLG00000024344 #20	NEK9 (ENSACLG00000024366) #21	ENSACLG00000024424 #22	MLH3 (ENSACLG00000024432) #23	ENSACLG00000024472 #24	JDP2 (ENSACLG00000024478) #25	FLVCR2 (ENSACLG00000024486) #26	ERG28 (ENSACLG00000024499) #27	ENSACLG00000024531 #28	ENSACLG00000024537 #28	tgfb3 (ENSACLG00000024559) #29	IFT43 (ENSACLG00000024588) #30	GPATCH2L (ENSACLG00000024682) #31	ESRRB (ENSACLG00000024711) #32	prox2 (ENSACLG00000024761) #33	dlst (ENSACLG00000024780) #34	RPS6KL1 (ENSACLG00000024821) #35	ENSACLG00000024844 #36
Zebra mbuna	MODERN SPECIES	11	tmed8 (ENSMZEG00005020739) #10	ENSMZEG00005020743	ATG2B (ENSMZEG00005020754) #12	gskip (ENSMZEG00005020767) #13	npc2.1 (ENSMZEG00005020770) #14	isca2 (ENSMZEG00005020772) #15	EML5 (ENSMZEG00005020778) #16	ttc8 (ENSMZEG00005020788) #17	ENSMZEG00005020797 #18	ENSMZEG00005020800 ##20	ENSMZEG00005020803 #20	ENSMZEG00005020806 ##20	ENSMZEG00005020810 ##20	ENSMZEG00005020813 #20	NEK9 (ENSMZEG00005020817) #21	ENSMZEG00005020826 #22	MLH3 (ENSMZEG00005020828) #23	ENSMZEG00005020833 #24	JDP2 (ENSMZEG00005020836) #25	FLVCR2 (ENSMZEG00005020841) #26	ENSMZEG00005020846	ERG28 (ENSMZEG00005020851) #27	ENSMZEG00005020854 #28	ENSMZEG00005020858	tgfb3 (ENSMZEG00005020864) #29	IFT43 (ENSMZEG00005020870) #30	GPATCH2L (ENSMZEG00005020876) #31	ESRRB (ENSMZEG00005020880) #32	prox2 (ENSMZEG00005020890) #33	dlst (ENSMZEG00005020939) #34	RPS6KL1 (ENSMZEG00005020941) #35
P. nyererei	MODERN SPECIES	418													ENSPNYG00000021367 ##20	ENSPNYG00000021385 #20	NEK9 (ENSPNYG00000021405) #21	ENSPNYG00000021426 #22	ENSPNYG00000021432 #23	ENSPNYG00000021445 #23	ENSPNYG00000021461 #24	JDP2 (ENSPNYG00000021474) #25	FLVCR2 (ENSPNYG00000021487) ##26	ERG28 (ENSPNYG00000021518) #27	ENSPNYG00000021526 #28	ENSPNYG00000021536	tgfb3 (ENSPNYG00000021547) #29	IFT43 (ENSPNYG00000021561) #30	GPATCH2L (ENSPNYG00000021578) #31	ESRRB (ENSPNYG00000021595) #32	prox2 (ENSPNYG00000021606) #33	dlst (ENSPNYG00000021627) #34	RPS6KL1 (ENSPNYG00000021655) #35
Lyretail cichlid	MODERN SPECIES	299	gskip (ENSNBRG00000004640) #13	npc2.1 (ENSNBRG00000004628) #14	isca2 (ENSNBRG00000004609) #15	EML5 (ENSNBRG00000004484) #16	ttc8 (ENSNBRG00000004443) #17	ENSNBRG00000004432 #18	ENSNBRG00000004420 ##20	ENSNBRG00000004402	ENSNBRG00000004394	ENSNBRG00000004378 ##20	ENSNBRG00000004355 ##20	ENSNBRG00000004315 #20	ENSNBRG00000004293	ENSNBRG00000004273 ##20	NEK9 (ENSNBRG00000004206) #21	ENSNBRG00000004194 #22	ENSNBRG00000004184	MLH3 (ENSNBRG00000004159) #23	ENSNBRG00000004137 #24	JDP2 (ENSNBRG00000004110) #25	ENSNBRG00000004097 #26	FLVCR2 (ENSNBRG00000004058) ##26	ERG28 (ENSNBRG00000004037) #27	ENSNBRG00000004022 #28	ENSNBRG00000004002 #28	ENSNBRG00000003977	tgfb3 (ENSNBRG00000003946) #29	IFT43 (ENSNBRG00000003925) #30	GPATCH2L (ENSNBRG00000003911) #31	ESRRB (ENSNBRG00000003887) #32	prox2 (ENSNBRG00000003860) #33
Nile tilapia	MODERN SPECIES	10	EML5 (ENSONIG00000020175) #16	ttc8 (ENSONIG00000020176) #17	ENSONIG00000020177 ##20	ENSONIG00000040387 ##20	ENSONIG00000028507 #20	ENSONIG00000043196	ENSONIG00000020181 #20	ENSONIG00000020179 ##20	ENSONIG00000020180 ##20	ENSONIG00000040533 ##20	ENSONIG00000034205 #20	ENSONIG00000035684 ##20	ENSONIG00000034187 #20	ENSONIG00000033262	NEK9 (ENSONIG00000020182) #21	ENSONIG00000020183 #22	MLH3 (ENSONIG00000020184) #23	ENSONIG00000020185 #24	JDP2 (ENSONIG00000020186) #25	FLVCR2 (ENSONIG00000020187) ##26	ERG28 (ENSONIG00000020188) #27	ENSONIG00000020189 #28	tgfb3 (ENSONIG00000020190) #29	IFT43 (ENSONIG00000037253) #30	GPATCH2L (ENSONIG00000020191) #31	ESRRB (ENSONIG00000020192) #32	prox2 (ENSONIG00000020193) #33	dlst (ENSONIG00000020194) #34	RPS6KL1 (ENSONIG00000020195) #35	ENSONIG00000020196 #36	ENSONIG00000020197 #37
Midas cichlid	MODERN SPECIES	150	zgc:163014 (ENSACIG00000007365) #9	tmed8 (ENSACIG00000007383) #10	ATG2B (ENSACIG00000007406) #12	gskip (ENSACIG00000007520) #13	npc2.1 (ENSACIG00000007526) #14	isca2 (ENSACIG00000007660) #15	EML5 (ENSACIG00000007683) #16	ttc8 (ENSACIG00000007783) #17	ENSACIG00000007814 #18	ENSACIG00000007829 #19	ENSACIG00000007841 ##20	ENSACIG00000007862	ENSACIG00000007883 ##20	ENSACIG00000007938 ##20	NEK9 (ENSACIG00000007963) #21	ENSACIG00000008009 #22	ENSACIG00000008029 #23	ENSACIG00000008052 #24	JDP2 (ENSACIG00000008079) #25	ENSACIG00000008112 ##26	FLVCR2 (ENSACIG00000008129) #26	ERG28 (ENSACIG00000008170) #27	ENSACIG00000008186 #28	ENSACIG00000008200	tgfb3 (ENSACIG00000008212) #29	IFT43 (ENSACIG00000008236) #30	GPATCH2L (ENSACIG00000008257) #31	ESRRB (ENSACIG00000008268) #32	prox2 (ENSACIG00000008285) #33	dlst (ENSACIG00000008305) #34	RPS6KL1 (ENSACIG00000008333) #35
Pomacentridae	ANCESTRAL SPECIES	19	ENSGT00940000164710 #9	ENSGT00530000063651.b #10	ENSGT00950000183044.a.a.b #11	ENSGT00620000087966.a #12	ENSGT00390000009517 #13	ENSGT00390000006223 #14	ENSGT00390000005700 #15	ENSGT00940000156613 #16	ENSGT00940000156816 #17	ENSGT01030000234575.c.a.a.a.a.b.b.a #18	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.b ##20	ENSGT01030000234575.c.a.a.a.a.b.b.b ##20	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.a #20	ENSGT01030000234575.c.a.a.a.a.b.a.a.b ##20	ENSGT00940000156145 #21	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00940000164930.a #24	ENSGT00940000155693.a.b #25	ENSGT01030000234625.B.d.d.b.a ##26	ENSGT00390000010925 #27	ENSGT00940000162910 #28	ENSGT00940000162939	ENSGT00940000155747.g.a.h #29	ENSGT00390000012060 #30	ENSGT00410000025698.b #31	ENSGT00940000153433.A.f #32	ENSGT00940000154790.b.a.b #33	ENSGT00930000151014.q #34	ENSGT00940000159815 #35	ENSGT00940000155454.w.a.a #36
Pomacentridae_A	ANCESTRAL SPECIES	19	ENSGT00940000164710 #9	ENSGT00530000063651.b #10	ENSGT00950000183044.a.a.b #11	ENSGT00620000087966.a #12	ENSGT00390000009517 #13	ENSGT00390000006223 #14	ENSGT00390000005700 #15	ENSGT00940000156613 #16	ENSGT00940000156816 #17	ENSGT01030000234575.c.a.a.a.a.b.b.a #18	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.b ##20	ENSGT01030000234575.c.a.a.a.a.b.b.b ##20	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.a #20	ENSGT01030000234575.c.a.a.a.a.b.a.a.b ##20	ENSGT00940000156145 #21	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00940000164930.a #24	ENSGT00940000155693.a.b #25	ENSGT01030000234625.B.d.d.b.a ##26	ENSGT00390000010925 #27	ENSGT00940000162910 #28	ENSGT00940000162939	ENSGT00940000155747.g.a.h #29	ENSGT00390000012060 #30	ENSGT00410000025698.b #31	ENSGT00940000153433.A.f #32	ENSGT00940000154790.b.a.b #33	ENSGT00930000151014.q #34	ENSGT00940000159815 #35	ENSGT00940000155454.w.a.a #36
Amphiprion	ANCESTRAL SPECIES	12	ENSGT00940000164710 #9	ENSGT00530000063651.b #10	ENSGT00950000183044.a.a.b #11	ENSGT00620000087966.a #12	ENSGT00390000009517 #13	ENSGT00390000006223 #14	ENSGT00390000005700 #15	ENSGT00940000156613 #16	ENSGT00940000156816 #17	ENSGT01030000234575.c.a.a.a.a.b.b.a #18	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.b ##20	ENSGT01030000234575.c.a.a.a.a.b.b.b ##20	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.a #20	ENSGT01030000234575.c.a.a.a.a.b.a.a.b ##20	ENSGT00940000156145 #21	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00940000164930.a #24	ENSGT00940000155693.a.b #25	ENSGT01030000234625.B.d.d.b.a ##26	ENSGT00390000010925 #27	ENSGT00940000162910 #28	ENSGT00940000162939	ENSGT00940000155747.g.a.h #29
Clown anemonefish	MODERN SPECIES	1431															NEK9 (ENSAOCG00000013138) #21	ENSAOCG00000013146 #22	ENSAOCG00000013184 #23	ENSAOCG00000013202 #24	JDP2 (ENSAOCG00000013212) #25	FLVCR2 (ENSAOCG00000013231) ##26	ERG28 (ENSAOCG00000013249) #27	ENSAOCG00000013283
Orange clownfish	MODERN SPECIES	9	gstz1 (ENSAPEG00000024491) #8	zgc:163014 (ENSAPEG00000024503) #9	tmed8 (ENSAPEG00000000322) #10	NOXRED1 (ENSAPEG00000000345) #11	ATG2B (ENSAPEG00000000393) #12	gskip (ENSAPEG00000000534) #13	npc2.1 (ENSAPEG00000000554) #14	isca2 (ENSAPEG00000000560) #15	EML5 (ENSAPEG00000000586) #16	ttc8 (ENSAPEG00000000736) #17	ENSAPEG00000000801 #18	ENSAPEG00000000832 ##20	ENSAPEG00000000890 ##20	ENSAPEG00000000904 ##20	NEK9 (ENSAPEG00000000928) #21	ENSAPEG00000000944 #22	ENSAPEG00000000961 #23	ENSAPEG00000001019 #24	JDP2 (ENSAPEG00000001021) #25	FLVCR2 (ENSAPEG00000001034) ##26	ERG28 (ENSAPEG00000001045) #27	ENSAPEG00000001073 #28	ENSAPEG00000001097	tgfb3 (ENSAPEG00000001156) #29	snx6 (ENSAPEG00000001199)	psma3 (ENSAPEG00000001270)	ENSAPEG00000001329	ENSAPEG00000001342	irf2bpl (ENSAPEG00000001359)	dact1 (ENSAPEG00000001412)	lgals3b (ENSAPEG00000001426)
Spiny chromis	MODERN SPECIES	154	gstz1 (ENSAPOG00000002595) #8	tmed8 (ENSAPOG00000000828) #10	NOXRED1 (ENSAPOG00000002643) #11	ATG2B (ENSAPOG00000002779) #12	gskip (ENSAPOG00000002810) #13	npc2.1 (ENSAPOG00000000060) #14	isca2 (ENSAPOG00000002937) #15	EML5 (ENSAPOG00000003064) #16	ttc8 (ENSAPOG00000003112) #17	ENSAPOG00000003121 #18	ENSAPOG00000000929 ##20	ENSAPOG00000003145 ##20	ENSAPOG00000003161 #20	ENSAPOG00000003174 ##20	NEK9 (ENSAPOG00000003199) #21	ENSAPOG00000003214 #22	ENSAPOG00000003226 #23	ENSAPOG00000003235 #24	JDP2 (ENSAPOG00000003248) #25	FLVCR2 (ENSAPOG00000003292) ##26	ERG28 (ENSAPOG00000003330) #27	ENSAPOG00000003392 #28	tgfb3 (ENSAPOG00000003404) #29	IFT43 (ENSAPOG00000003418) #30	GPATCH2L (ENSAPOG00000003442) #31
Bicolor damselfish	MODERN SPECIES	244	zgc:163014 (ENSSPAG00000009950) #9	tmed8 (ENSSPAG00000009938) #10	NOXRED1 (ENSSPAG00000009929) #11	ATG2B (ENSSPAG00000009869) #12	gskip (ENSSPAG00000009855) #13	npc2.1 (ENSSPAG00000009838) #14	isca2 (ENSSPAG00000009824) #15	EML5 (ENSSPAG00000009735) #16	ttc8 (ENSSPAG00000009650) #17	ENSSPAG00000009635 #18	ENSSPAG00000009616 ##20	ENSSPAG00000009603 ##20	ENSSPAG00000009596 #20	ENSSPAG00000009588 ##20	NEK9 (ENSSPAG00000009560) #21	ENSSPAG00000009542 #22	MLH3 (ENSSPAG00000009525) #23	ENSSPAG00000009516 #24	ENSSPAG00000009505 ##25	FLVCR2 (ENSSPAG00000009467) ##26	ERG28 (ENSSPAG00000009448) #27	ENSSPAG00000009438 #28	ENSSPAG00000009413	tgfb3 (ENSSPAG00000009377) #29	IFT43 (ENSSPAG00000009354) #30	GPATCH2L (ENSSPAG00000009339) #31	ESRRB (ENSSPAG00000009297) #32	prox2 (ENSSPAG00000009278) #33	dlst (ENSSPAG00000009222) #34	RPS6KL1 (ENSSPAG00000009189) #35	ENSSPAG00000009174 #36
Atherinomorphae	ANCESTRAL SPECIES	11	ENSGT00940000164710 #9	ENSGT00530000063651.b #10	ENSGT00950000183044.a.a.b #11	ENSGT00620000087966.a #12	ENSGT00390000009517 #13	ENSGT00390000006223 #14	ENSGT00390000005700 #15	ENSGT00940000156613 #16	ENSGT00940000156816 #17	ENSGT01030000234575.c.a.a.a.a.b.b.a #18	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.b ##20	ENSGT01030000234575.c.a.a.a.a.b.b.b ##20	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.a #20	ENSGT01030000234575.c.a.a.a.a.b.a.a.b ##20	ENSGT00940000156145 #21	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00940000164930.a #24	ENSGT00940000155693.a.b #25	ENSGT01030000234625.B.d.c.a #26	ENSGT00390000010925 #27	ENSGT00940000162910 #28	ENSGT00940000162939	ENSGT00940000155747.g.a #29	ENSGT00390000012060 #30	ENSGT00410000025698.b #31	ENSGT00940000153433.A.f #32	ENSGT00940000154790.b.a.b #33	ENSGT00930000151014.q #34	ENSGT00940000159815 #35	ENSGT00940000155454.w.a.b ##37
Oryzias	ANCESTRAL SPECIES	3	ENSGT00940000164710 #9	ENSGT00530000063651.b #10	ENSGT00950000183044.a.a.b #11	ENSGT00620000087966.a #12	ENSGT00390000009517 #13	ENSGT00390000006223 #14	ENSGT00390000005700 #15	ENSGT00940000156613 #16	ENSGT00940000156816 #17	ENSGT01030000234575.c.a.a.a.a.b.b.a #18	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.b ##20	ENSGT01030000234575.c.a.a.a.a.b.b.b ##20	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.a.b #20	ENSGT01030000234575.c.a.a.a.a.b.a.a.b ##20	ENSGT00940000156145 #21	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00940000164930.a #24	ENSGT00940000155693.a.b #25	ENSGT01030000234625.B.d.c.a #26	ENSGT00390000010925 #27	ENSGT00940000162910 #28	ENSGT00940000162939	ENSGT00940000155747.g.a #29	ENSGT00390000012060 #30	ENSGT00410000025698.b #31	ENSGT00940000153433.A.f #32	ENSGT00940000154790.b.a.b #33	ENSGT00930000151014.q #34	ENSGT00940000159815 #35	ENSGT00940000154297.A.g.a
Oryzias_a	ANCESTRAL SPECIES	11	ENSGT00940000164710 #9	ENSGT00530000063651.b #10	ENSGT00620000087966.a #12	ENSGT00390000009517 #13	ENSGT00390000006223 #14	ENSGT00390000005700 #15	ENSGT00940000156613 #16	ENSGT00940000156816 #17	ENSGT01030000234575.c.a.a.a.a.b.b.a #18	ENSGT00940000174567 #19	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.b ##20	ENSGT01030000234575.c.a.a.a.a.b.b.b ##20	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.a.b #20	ENSGT01030000234575.c.a.a.a.a.b.a.a.b ##20	ENSGT00940000156145 #21	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00940000164930.a #24	ENSGT00940000155693.a.b #25	ENSGT01030000234625.B.d.c.a #26	ENSGT00390000010925 #27	ENSGT00940000162910 #28	ENSGT00940000155747.g.a #29	ENSGT00390000012060 #30	ENSGT00410000025698.b #31	ENSGT00940000153433.A.f #32	ENSGT00940000154790.b.a.b #33	ENSGT00930000151014.q #34	ENSGT00940000159815 #35	ENSGT00940000154297.A.g.a	ENSGT00940000159057
Japanese Medaka HdrR	MODERN SPECIES	14	zgc:163014 (ENSORLG00000016320) #9	tmed8 (ENSORLG00000016326) #10	ATG2B (ENSORLG00000016349) #12	npc2.1 (ENSORLG00000022170) #14	gskip (ENSORLG00000016354) #13	isca2 (ENSORLG00000016363) #15	EML5 (ENSORLG00000016408) #16	ENSORLG00000016451 #18	ttc8 (ENSORLG00000016437) #17	ENSORLG00000016456 ##20	ENSORLG00000028807 ##20	ENSORLG00000025036 #20	ENSORLG00000026672 ##20	ENSORLG00000029477 ##20	NEK9 (ENSORLG00000016466) #21	ENSORLG00000028769 #22	ENSORLG00000016499 #23	ENSORLG00000016509 #24	JDP2 (ENSORLG00000029498) #25	FLVCR2 (ENSORLG00000016522) #26	ERG28 (ENSORLG00000016527) #27	ENSORLG00000024651 #28	tgfb3 (ENSORLG00000016565) #29	IFT43 (ENSORLG00000016572) #30	GPATCH2L (ENSORLG00000022664) #31	esrrb (ENSORLG00000016581) #32	prox2 (ENSORLG00000016587) #33	dlst (ENSORLG00000016623) #34	RPS6KL1 (ENSORLG00000016629) #35	LRRC74A (ENSORLG00000016633)	ENSORLG00000016639
Chinese medaka	MODERN SPECIES	2368																ENSOSIG00000012951 #22
Oryzias_b	ANCESTRAL SPECIES	12	ENSGT00530000063651.b #10	ENSGT00950000183044.a.a.b #11	ENSGT00620000087966.a #12	ENSGT00390000009517 #13	ENSGT00390000006223 #14	ENSGT00390000005700 #15	ENSGT00940000156613 #16	ENSGT00940000156816 #17	ENSGT01030000234575.c.a.a.a.a.b.b.a #18	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.b ##20	ENSGT01030000234575.c.a.a.a.a.b.b.b ##20	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.a.a.a #20	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.a.a.b #20	ENSGT01030000234575.c.a.a.a.a.b.a.a.b ##20	ENSGT00940000156145 #21	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00940000164930.a #24	ENSGT00940000155693.a.b #25	ENSGT01030000234625.B.d.c.a #26	ENSGT00390000010925 #27	ENSGT00940000162910 #28	ENSGT00940000162939	ENSGT00940000155747.g.a #29	ENSGT00390000012060 #30	ENSGT00410000025698.b #31	ENSGT00940000153433.A.f #32	ENSGT00940000154790.b.a.b #33	ENSGT00930000151014.q #34	ENSGT00940000159815 #35	ENSGT00940000154297.A.g.a
Indian medaka	MODERN SPECIES		ENSOMEG00000021655 #12	ENSOMEG00000021632 #11	ENSOMEG00000021616 #12	npc2.1 (ENSOMEG00000021603) #14	gskip (ENSOMEG00000021589) #13	isca2 (ENSOMEG00000021582) #15	EML5 (ENSOMEG00000021512) #16	ttc8 (ENSOMEG00000021289) #17	ENSOMEG00000021398 #18	ENSOMEG00000021211 ##20	ENSOMEG00000021194 ##20	ENSOMEG00000021178 #20	ENSOMEG00000021163 #20	ENSOMEG00000021145 #20	NEK9 (ENSOMEG00000021129) #21	ENSOMEG00000021096 #22	ENSOMEG00000021076 #23	ENSOMEG00000020995 #24	JDP2 (ENSOMEG00000020954) #25	FLVCR2 (ENSOMEG00000020912) #26	ERG28 (ENSOMEG00000020883) #27	ENSOMEG00000020849 #28	ENSOMEG00000020840	tgfb3 (ENSOMEG00000020809) #29	IFT43 (ENSOMEG00000020751) #30	GPATCH2L (ENSOMEG00000020697) #31	ESRRB (ENSOMEG00000020638) #32	prox2 (ENSOMEG00000020556) #33	dlst (ENSOMEG00000020530) #34	RPS6KL1 (ENSOMEG00000020459) #35	ANGEL1 (ENSOMEG00000020430)
Javanese ricefish	MODERN SPECIES	14	tmed8 (ENSOJAG00000005525) #10	NOXRED1 (ENSOJAG00000005479) #11	ATG2B (ENSOJAG00000005376) #12	gskip (ENSOJAG00000005347) #13	npc2.1 (ENSOJAG00000005342) #14	isca2 (ENSOJAG00000005334) #15	EML5 (ENSOJAG00000005258) #16	ttc8 (ENSOJAG00000005178) #17	ENSOJAG00000005164 #18	ENSOJAG00000005156 ##20	ENSOJAG00000005144	ENSOJAG00000005100 #20	ENSOJAG00000005078 #20	ENSOJAG00000005066 ##20	NEK9 (ENSOJAG00000004956) #21	ENSOJAG00000004937 #22	ENSOJAG00000004920 #23	ENSOJAG00000004732 #24	JDP2 (ENSOJAG00000004690) #25	FLVCR2 (ENSOJAG00000004190) #26	ERG28 (ENSOJAG00000004081) #27	ENSOJAG00000003950 #28	tgfb3 (ENSOJAG00000003928) #29	IFT43 (ENSOJAG00000003918) #30	GPATCH2L (ENSOJAG00000003875) #31	ESRRB (ENSOJAG00000003699) #32	prox2 (ENSOJAG00000003608) #33	dlst (ENSOJAG00000003574) #34	RPS6KL1 (ENSOJAG00000022916) #35	LRRC74A (ENSOJAG00000022909)	ANGEL1 (ENSOJAG00000022907)
Cyprinodontiformes	ANCESTRAL SPECIES	23	ENSGT00390000006580 #8	ENSGT00940000164710 #9	ENSGT00530000063651.b #10	ENSGT00950000183044.a.a.b #11	ENSGT00620000087966.a #12	ENSGT00390000009517 #13	ENSGT00390000006223 #14	ENSGT00390000005700 #15	ENSGT00940000156613 #16	ENSGT00940000156816 #17	ENSGT01030000234575.c.a.a.a.a.b.b.a #18	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.b ##20	ENSGT01030000234575.c.a.a.a.a.b.b.b ##20	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.a #20	ENSGT00940000156145 #21	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00940000164930.a #24	ENSGT00940000155693.a.b #25	ENSGT01030000234625.B.d.c.a #26	ENSGT00390000010925 #27	ENSGT00940000162910 #28	ENSGT00940000177781	ENSGT00940000155747.g.a #29	ENSGT00390000012060 #30	ENSGT00410000025698.b #31	ENSGT00940000153433.A.f #32	ENSGT00940000154790.b.a.b #33	ENSGT00930000151014.q #34	ENSGT00940000159815 #35	ENSGT00940000155454.w.a.b ##37
Aplocheiloidei	ANCESTRAL SPECIES	15	ENSGT00390000006580 #8	ENSGT00940000164710 #9	ENSGT00530000063651.b #10	ENSGT00950000183044.a.a.b #11	ENSGT00620000087966.a #12	ENSGT00390000009517 #13	ENSGT00390000006223 #14	ENSGT00390000005700 #15	ENSGT00940000156613 #16	ENSGT00940000156816 #17	ENSGT01030000234575.c.a.a.a.a.b.b.a #18	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.b ##20	ENSGT01030000234575.c.a.a.a.a.b.b.b ##20	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.a #20	ENSGT00940000156145 #21	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00940000164930.a #24	ENSGT00940000155693.a.b #25	ENSGT01030000234625.B.d.c.a #26	ENSGT00390000010925 #27	ENSGT00940000162910 #28	ENSGT00940000155747.g.a #29	ENSGT00390000012060 #30	ENSGT00410000025698.b #31	ENSGT00940000153433.A.f #32	ENSGT00940000154790.b.a.b #33	ENSGT00930000151014.q #34	ENSGT00940000159815 #35	ENSGT00940000155454.w.a.b ##37	ENSGT00940000155454.w.a.a #36
Mangrove rivulus	MODERN SPECIES	1	zgc:163014 (ENSKMAG00000003393) #9	tmed8 (ENSKMAG00000003386) #10	NOXRED1 (ENSKMAG00000003374) #11	ATG2B (ENSKMAG00000003284) #12	ENSKMAG00000003248 #12	gskip (ENSKMAG00000003233) #13	npc2.1 (ENSKMAG00000003135) #14	isca2 (ENSKMAG00000003115) #15	EML5 (ENSKMAG00000002983) #16	ttc8 (ENSKMAG00000002905) #17	ENSKMAG00000002881 #18	ENSKMAG00000002868 ##20	ENSKMAG00000002860 ##20	ENSKMAG00000002854 #20	NEK9 (ENSKMAG00000002833) #21	ENSKMAG00000002818 #22	ENSKMAG00000002802 #23	ENSKMAG00000002599 #24	JDP2 (ENSKMAG00000002558) #25	FLVCR2 (ENSKMAG00000002511) ##26	ERG28 (ENSKMAG00000002483) #27	ENSKMAG00000002437 #28	tgfb3 (ENSKMAG00000002413) #29	IFT43 (ENSKMAG00000002368) #30	GPATCH2L (ENSKMAG00000002351) #31	ESRRB (ENSKMAG00000002284) #32	prox2 (ENSKMAG00000002267) #33	dlst (ENSKMAG00000002252) #34	RPS6KL1 (ENSKMAG00000002235) #35	ENSKMAG00000002222 ##37	ENSKMAG00000002205 #36
Turquoise killifish	MODERN SPECIES	1625	NGB (ENSNFUG00015021626)	coq6 (ENSNFUG00015021634)	ENTPD5 (ENSNFUG00015021720)	ENSNFUG00015021761	ALDH6A1 (ENSNFUG00015021782) #7	gstz1 (ENSNFUG00015022022) #8	zgc:163014 (ENSNFUG00015022030) #9	tmed8 (ENSNFUG00015022039) #10	gskip (ENSNFUG00015022080) #13	ISCA2 (ENSNFUG00015022087) #15	EML5 (ENSNFUG00015022102) #16	ttc8 (ENSNFUG00015022143) #17	ENSNFUG00015022179 #18	ENSNFUG00015022182	ENSNFUG00015022184 #20	ENSNFUG00015022220 #22	ENSNFUG00015022229 #23	ENSNFUG00015012380 #24	JDP2 (ENSNFUG00015012547) #25	FLVCR2 (ENSNFUG00015012556) #26	ERG28 (ENSNFUG00015012618) #27	ENSNFUG00015012630 #28	TGFB3 (ENSNFUG00015012658) #29	IFT43 (ENSNFUG00015012668) #30	GPATCH2L (ENSNFUG00015012681) #31	ESRRB (ENSNFUG00015012693) #32	prox2 (ENSNFUG00015012731) #33	DLST (ENSNFUG00015012758) #34	RPS6KL1 (ENSNFUG00015012869) #35	HSD17B8 (ENSNFUG00015012901)	ENSNFUG00015012991
Cyprinodontoidei	ANCESTRAL SPECIES	8	ENSGT00390000006580 #8	ENSGT00940000164710 #9	ENSGT00530000063651.b #10	ENSGT00950000183044.a.a.b #11	ENSGT00620000087966.a #12	ENSGT00390000009517 #13	ENSGT00390000006223 #14	ENSGT00390000005700 #15	ENSGT00940000156613 #16	ENSGT00940000156816 #17	ENSGT01030000234575.c.a.a.a.a.b.b.a #18	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.b ##20	ENSGT01030000234575.c.a.a.a.a.b.b.b ##20	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.a #20	ENSGT00940000156145 #21	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00940000164930.a #24	ENSGT00940000155693.a.b #25	ENSGT01030000234625.B.d.c.a #26	ENSGT00390000010925 #27	ENSGT00940000162910 #28	ENSGT00940000177781	ENSGT00940000155747.g.a #29	ENSGT00390000012060 #30	ENSGT00410000025698.b #31	ENSGT00940000153433.A.f #32	ENSGT00940000154790.b.a.b #33	ENSGT00930000151014.q #34	ENSGT00940000159815 #35	ENSGT00940000155454.w.a.a #36
Poeciliinae	ANCESTRAL SPECIES	8	ENSGT00390000006580 #8	ENSGT00940000164710 #9	ENSGT00530000063651.b #10	ENSGT00950000183044.a.a.b #11	ENSGT00620000087966.a #12	ENSGT00390000009517 #13	ENSGT00390000006223 #14	ENSGT00390000005700 #15	ENSGT00940000156613 #16	ENSGT00940000156816 #17	ENSGT01030000234575.c.a.a.a.a.b.b.a #18	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.b ##20	ENSGT01030000234575.c.a.a.a.a.b.b.b ##20	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.a #20	ENSGT00940000156145 #21	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00940000164930.a #24	ENSGT00940000155693.a.b #25	ENSGT01030000234625.B.d.c.a #26	ENSGT00390000010925 #27	ENSGT00940000162910 #28	ENSGT00940000155747.g.a #29	ENSGT00390000012060 #30	ENSGT00410000025698.b #31	ENSGT00940000153433.A.f #32	ENSGT00940000154790.b.a.b #33	ENSGT00930000151014.q #34	ENSGT00940000159815 #35	ENSGT00940000155454.w.a.a #36	ENSGT00940000155454.w.b #37
Poecilia	ANCESTRAL SPECIES	10	ENSGT00390000006580 #8	ENSGT00940000164710 #9	ENSGT00530000063651.b #10	ENSGT00950000183044.a.a.b #11	ENSGT00620000087966.a #12	ENSGT00390000009517 #13	ENSGT00390000006223 #14	ENSGT00390000005700 #15	ENSGT00940000156613 #16	ENSGT00940000156816 #17	ENSGT01030000234575.c.a.a.a.a.b.b.a #18	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.b ##20	ENSGT01030000234575.c.a.a.a.a.b.b.b ##20	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.a #20	ENSGT00940000156145 #21	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00940000164930.a #24	ENSGT00940000155693.a.b #25	ENSGT01030000234625.B.d.c.a #26	ENSGT00390000010925 #27	ENSGT00940000162910 #28	ENSGT00940000155747.g.a #29	ENSGT00390000012060 #30	ENSGT00410000025698.b #31	ENSGT00940000153433.A.f #32	ENSGT00940000154790.b.a.b #33	ENSGT00930000151014.q #34	ENSGT00940000159815 #35	ENSGT00940000155454.w.a.a #36	ENSGT00940000155454.w.b #37
NAME_6	ANCESTRAL SPECIES	6	ENSGT00530000063651.b #10	ENSGT00950000183044.a.a.b #11	ENSGT00620000087966.a #12	ENSGT00390000009517.s #13	ENSGT00390000006223.c #14	ENSGT00390000009517.t #13	ENSGT00390000006223.d #14	ENSGT00390000005700 #15	ENSGT00940000156613 #16	ENSGT00940000156816 #17	ENSGT01030000234575.c.a.a.a.a.b.b.a #18	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.b ##20	ENSGT01030000234575.c.a.a.a.a.b.b.b ##20	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.a #20	ENSGT00940000156145 #21	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00940000164930.a #24	ENSGT00940000155693.a.b #25	ENSGT01030000234625.B.d.c.a #26	ENSGT00390000010925 #27	ENSGT00940000162910 #28	ENSGT00940000155747.g.a #29	ENSGT00390000012060 #30	ENSGT00410000025698.b #31	ENSGT00940000153433.A.f #32	ENSGT00940000154790.b.a.b #33	ENSGT00930000151014.q #34	ENSGT00940000159815 #35	ENSGT00940000155454.w.a.a #36	ENSGT00940000155454.w.b #37
Sailfin molly	MODERN SPECIES	364						ENSPLAG00000008095 #12	gskip (ENSPLAG00000008109) #13	NPC2 (ENSPLAG00000008128) #14	isca2 (ENSPLAG00000008136) #15	EML5 (ENSPLAG00000008373) #16	ttc8 (ENSPLAG00000008441) #17	ENSPLAG00000008463 #18	ENSPLAG00000008500 ##20	ENSPLAG00000008590 #20	NEK9 (ENSPLAG00000008620) #21	ENSPLAG00000008628 #22	ENSPLAG00000008640 #23	ENSPLAG00000009128 #24	FLVCR2 (ENSPLAG00000009186) #26	ERG28 (ENSPLAG00000009211) #27	ENSPLAG00000009224 #28	ENSPLAG00000009247 #28	tgfb3 (ENSPLAG00000009277) #29	IFT43 (ENSPLAG00000009287) #30	GPATCH2L (ENSPLAG00000009312) #31
Amazon molly	MODERN SPECIES	282	tmed8 (ENSPFOG00000015795) #10	ENSPFOG00000015794 #11	gskip (ENSPFOG00000015740) #13	NPC2 (ENSPFOG00000015721) #14	ATG2B (ENSPFOG00000015576) #12	gskip (ENSPFOG00000015548) #13	NPC2 (ENSPFOG00000015546) #14	isca2 (ENSPFOG00000015543) #15	EML5 (ENSPFOG00000015280) #16	ttc8 (ENSPFOG00000015227) #17	ENSPFOG00000015213 #18	ENSPFOG00000022333 ##20	ENSPFOG00000015203 ##20	ENSPFOG00000024162 #20	NEK9 (ENSPFOG00000015097) #21	ENSPFOG00000015092 #22	ENSPFOG00000015041 #23	ENSPFOG00000015030 #24	JDP2 (ENSPFOG00000015014) #25	FLVCR2 (ENSPFOG00000014890) #26	ERG28 (ENSPFOG00000014865) #27	ENSPFOG00000014806 #28	tgfb3 (ENSPFOG00000014756) #29	IFT43 (ENSPFOG00000014703) #30	GPATCH2L (ENSPFOG00000014687) #31	ESRRB (ENSPFOG00000014654) #32	prox2 (ENSPFOG00000014635) #33	dlst (ENSPFOG00000014514) #34	RPS6KL1 (ENSPFOG00000014419) #35	ENSPFOG00000014381 #36	ENSPFOG00000014372 #37
Guppy	MODERN SPECIES	453	aldh6a1 (ENSPREG00000010333) #7	gstz1 (ENSPREG00000010267) #8	zgc:163014 (ENSPREG00000010237) #9	tmed8 (ENSPREG00000010221) #10	NOXRED1 (ENSPREG00000010209) #11	ATG2B (ENSPREG00000010076) #12	gskip (ENSPREG00000010046) #13	npc2.1 (ENSPREG00000009939) #14	isca2 (ENSPREG00000009920) #15	EML5 (ENSPREG00000009770) #16	ttc8 (ENSPREG00000009689) #17	ENSPREG00000009739 #18	ENSPREG00000009670 ##20	ENSPREG00000009658 #20	NEK9 (ENSPREG00000009628) #21	ENSPREG00000009615 #22	ENSPREG00000009604 #23	ENSPREG00000009598 #24	FLVCR2 (ENSPREG00000009584) #26	ERG28 (ENSPREG00000009563) #27	ENSPREG00000009465 #28	tgfb3 (ENSPREG00000009401) #29	IFT43 (ENSPREG00000009385) #30	GPATCH2L (ENSPREG00000009374) #31	ESRRB (ENSPREG00000009351) #32	prox2 (ENSPREG00000009326) #33	dlst (ENSPREG00000009199) #34	RPS6KL1 (ENSPREG00000009143) #35	ENSPREG00000009124 #36	ENSPREG00000009113 #37	ENSPREG00000009102
Platyfish	MODERN SPECIES	10	zgc:163014 (ENSXMAG00000015067) #9	tmed8 (ENSXMAG00000026398) #10	NOXRED1 (ENSXMAG00000024964) #11	ATG2B (ENSXMAG00000014982) #12	ENSXMAG00000023766 #12	gskip (ENSXMAG00000021582) #13	npc2.1 (ENSXMAG00000014967) #14	isca2 (ENSXMAG00000014962) #15	EML5 (ENSXMAG00000014899) #16	ttc8 (ENSXMAG00000014881) #17	ENSXMAG00000025642 #18	ENSXMAG00000020956 ##20	ENSXMAG00000028329 ##20	ENSXMAG00000014872 #20	NEK9 (ENSXMAG00000014847) #21	ENSXMAG00000028286 #22	ENSXMAG00000014821 #23	ENSXMAG00000021870 #24	JDP2 (ENSXMAG00000014805) #25	FLVCR2 (ENSXMAG00000026309) #26	ERG28 (ENSXMAG00000014769) #27	ENSXMAG00000014737 #28	tgfb3 (ENSXMAG00000014713) #29	IFT43 (ENSXMAG00000014700) #30	GPATCH2L (ENSXMAG00000029501) #31	ESRRB (ENSXMAG00000014672) #32	prox2 (ENSXMAG00000014663) #33	dlst (ENSXMAG00000014638) #34	RPS6KL1 (ENSXMAG00000014631) #35	ENSXMAG00000014621 #36	ENSXMAG00000014617 #37
NAME_4	ANCESTRAL SPECIES	18	ENSGT00940000154427.A.c	ENSGT00940000156110.c.a #7	ENSGT00390000006580 #8	ENSGT00940000164710 #9	ENSGT00530000063651.b #10	ENSGT00950000183044.a.a.b #11	ENSGT00620000087966.a #12	ENSGT00390000009517 #13	ENSGT00390000006223 #14	ENSGT00390000005700 #15	ENSGT00940000156613 #16	ENSGT00940000156816 #17	ENSGT01030000234575.c.a.a.a.a.b.b.a #18	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.b ##20	ENSGT00940000156145 #21	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00940000164930.a #24	ENSGT00940000155693.a.b #25	ENSGT01030000234625.B.d.d.b.a ##26	ENSGT00390000010925 #27	ENSGT00940000162910 #28	ENSGT00940000177781	ENSGT00940000155747.g.a #29	ENSGT00390000012060 #30	ENSGT00410000025698.b #31	ENSGT00940000153433.A.f #32	ENSGT00940000154790.b.a.b #33	ENSGT00930000151014.q #34	ENSGT00940000159815 #35	ENSGT00940000155454.w.a.a #36
Sheepshead minnow	MODERN SPECIES	490	BBOF1 (ENSCVAG00000022881)	aldh6a1 (ENSCVAG00000022872) #7	gstz1 (ENSCVAG00000022840) #8	zgc:163014 (ENSCVAG00000022830) #9	tmed8 (ENSCVAG00000022808) #10	ATG2B (ENSCVAG00000022803) #12	ENSCVAG00000022783 #12	gskip (ENSCVAG00000022739) #13	npc2.1 (ENSCVAG00000022728) #14	isca2 (ENSCVAG00000022712) #15	EML5 (ENSCVAG00000022697) #16	ttc8 (ENSCVAG00000022602) #17	ENSCVAG00000022550 #18	ENSCVAG00000022544 ##20	NEK9 (ENSCVAG00000022531) #21	ENSCVAG00000022493 #22	MLH3 (ENSCVAG00000022485) #23	ENSCVAG00000022477 #24	JDP2 (ENSCVAG00000022457) #25	FLVCR2 (ENSCVAG00000022444) ##26	ERG28 (ENSCVAG00000022413) #27	ENSCVAG00000022405 #28	ENSCVAG00000022394	tgfb3 (ENSCVAG00000000577) #29	IFT43 (ENSCVAG00000022374) #30	GPATCH2L (ENSCVAG00000022365) #31	ESRRB (ENSCVAG00000022357) #32	prox2 (ENSCVAG00000022322) #33	dlst (ENSCVAG00000022292) #34	RPS6KL1 (ENSCVAG00000022286) #35	ENSCVAG00000022271 #36
Mummichog	MODERN SPECIES	99																ENSFHEG00000017548 #22	ENSFHEG00000017559 #23	ENSFHEG00000017571 #23
Tiger tail seahorse	MODERN SPECIES	491													ENSHCOG00000013815 ##20	ENSHCOG00000013821 #20	NEK9 (ENSHCOG00000013844) #21	ENSHCOG00000013850 #22	ENSHCOG00000013862 #23	ENSHCOG00000013914 #23	ENSHCOG00000013934 #24	JDP2 (ENSHCOG00000013941) #25	ENSHCOG00000013945 #26	FLVCR2 (ENSHCOG00000013964) #26	ERG28 (ENSHCOG00000013983) #27	ENSHCOG00000013993 #28	ENSHCOG00000014009	tgfb3 (ENSHCOG00000014030) #29	IFT43 (ENSHCOG00000014060) #30	thoc7 (ENSHCOG00000014078)	ENSHCOG00000014085	ESRRB (ENSHCOG00000014101) #32	prox2 (ENSHCOG00000014117) #33
Pinecone sodierfish	MODERN SPECIES	14	zgc:163014 (ENSMMDG00005009952) #9	tmed8 (ENSMMDG00005009959) #10	NOXRED1 (ENSMMDG00005009966) #11	ENSMMDG00005009972	ATG2B (ENSMMDG00005010017) #12	gskip (ENSMMDG00005010925) #13	npc2.1 (ENSMMDG00005010926) #14	isca2 (ENSMMDG00005010927) #15	EML5 (ENSMMDG00005010928) #16	ttc8 (ENSMMDG00005010931) #17	ENSMMDG00005010955 #18	ENSMMDG00005010959 #19	ENSMMDG00005010962 ##20	NEK9 (ENSMMDG00005010969) #21	ENSMMDG00005011011	ENSMMDG00005011012 #22	MLH3 (ENSMMDG00005011014) #23	ENSMMDG00005011024 #24	JDP2 (ENSMMDG00005011026) #25	FLVCR2 (ENSMMDG00005011033) ##26	ERG28 (ENSMMDG00005011058) #27	ENSMMDG00005011064 #28	tgfb3 (ENSMMDG00005011068) #29	IFT43 (ENSMMDG00005011069) #30	GPATCH2L (ENSMMDG00005011070) #31	ESRRB (ENSMMDG00005011073) #32	prox2 (ENSMMDG00005011116) #33	dlst (ENSMMDG00005011127) #34	RPS6KL1 (ENSMMDG00005011406) #35	ENSMMDG00005011423 #36	ENSMMDG00005011425 #37
Cod	MODERN SPECIES	18	gstz1 (ENSGMOG00000015791) #8	zgc:163014 (ENSGMOG00000024580) #9	tmed8 (ENSGMOG00000015776) #10	NOXRED1 (ENSGMOG00000025654) #11	ENSGMOG00000015676 #12	gskip (ENSGMOG00000015670) #13	npc2.1 (ENSGMOG00000015657) #14	isca2 (ENSGMOG00000015643) #15	ENSGMOG00000015571 #16	ENSGMOG00000015545 #17	ENSGMOG00000024654 #18	ENSGMOG00000026373 #19	ENSGMOG00000023306 #19	NEK9 (ENSGMOG00000015498) #21	ENSGMOG00000026286	ENSGMOG00000024862 #22	ENSGMOG00000023194 #23	ENSGMOG00000027603 #24	JDP2 (ENSGMOG00000015382) #25	FLVCR2 (ENSGMOG00000024949) #26	ERG28 (ENSGMOG00000015353) #27	ENSGMOG00000015266 #28	tgfb3 (ENSGMOG00000015251) #29	IFT43 (ENSGMOG00000015229) #30	ENSGMOG00000032252	GPATCH2L (ENSGMOG00000034598) #31	ESRRB (ENSGMOG00000015180) #32	prox2 (ENSGMOG00000015166) #33	dlst (ENSGMOG00000015133) #34	RPS6KL1 (ENSGMOG00000015101) #35	ENSGMOG00000015004 #36