Ovalentaria	ANCESTRAL SPECIES	10	ENSGT00940000164710 #7	ENSGT00530000063651.b #8	ENSGT00950000183044.a.a.b #9	ENSGT00620000087966.a #10	ENSGT00390000009517 #11	ENSGT00390000006223 #12	ENSGT00390000005700 #13	ENSGT00940000156613 #14	ENSGT00940000156816 #15	ENSGT01030000234575.c.a.a.a.a.b.b.a #16	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.b #17	ENSGT01030000234575.c.a.a.a.a.b.b.b #18	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.a #19	ENSGT01030000234575.c.a.a.a.a.b.a.a.b #20	ENSGT00940000156145 #21	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00940000164930.a #24	ENSGT00940000155693.a.b #25	ENSGT01030000234625.B.d.c.a #26	ENSGT01030000234625.B.d.d.b.a ##26	ENSGT00390000010925 #27	ENSGT00940000162910 #28	ENSGT00940000162939 #29	ENSGT00940000155747.g.a #30	ENSGT00390000012060 #31	ENSGT00410000025698.b #32	ENSGT00940000153433.A.f #33	ENSGT00940000154790.b.a.b #34	ENSGT00930000151014.q #35	ENSGT00940000159815 #36
Atherinomorphae	ANCESTRAL SPECIES	11	ENSGT00940000164710 #7	ENSGT00530000063651.b #8	ENSGT00950000183044.a.a.b #9	ENSGT00620000087966.a #10	ENSGT00390000009517 #11	ENSGT00390000006223 #12	ENSGT00390000005700 #13	ENSGT00940000156613 #14	ENSGT00940000156816 #15	ENSGT01030000234575.c.a.a.a.a.b.b.a #16	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.b #17	ENSGT01030000234575.c.a.a.a.a.b.b.b #18	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.a #19	ENSGT01030000234575.c.a.a.a.a.b.a.a.b #20	ENSGT00940000156145 #21	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00940000164930.a #24	ENSGT00940000155693.a.b #25	ENSGT01030000234625.B.d.c.a #26	ENSGT00390000010925 #27	ENSGT00940000162910 #28	ENSGT00940000162939 #29	ENSGT00940000155747.g.a #30	ENSGT00390000012060 #31	ENSGT00410000025698.b #32	ENSGT00940000153433.A.f #33	ENSGT00940000154790.b.a.b #34	ENSGT00930000151014.q #35	ENSGT00940000159815 #36	ENSGT00940000155454.w.a.b #37
Oryzias	ANCESTRAL SPECIES	3	ENSGT00940000164710 #7	ENSGT00530000063651.b #8	ENSGT00950000183044.a.a.b #9	ENSGT00620000087966.a #10	ENSGT00390000009517 #11	ENSGT00390000006223 #12	ENSGT00390000005700 #13	ENSGT00940000156613 #14	ENSGT00940000156816 #15	ENSGT01030000234575.c.a.a.a.a.b.b.a #16	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.b #17	ENSGT01030000234575.c.a.a.a.a.b.b.b #18	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.a.b #19	ENSGT01030000234575.c.a.a.a.a.b.a.a.b #20	ENSGT00940000156145 #21	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00940000164930.a #24	ENSGT00940000155693.a.b #25	ENSGT01030000234625.B.d.c.a #26	ENSGT00390000010925 #27	ENSGT00940000162910 #28	ENSGT00940000162939 #29	ENSGT00940000155747.g.a #30	ENSGT00390000012060 #31	ENSGT00410000025698.b #32	ENSGT00940000153433.A.f #33	ENSGT00940000154790.b.a.b #34	ENSGT00930000151014.q #35	ENSGT00940000159815 #36	ENSGT00940000154297.A.g.a
Oryzias_a	ANCESTRAL SPECIES	11	ENSGT00940000164710 #7	ENSGT00530000063651.b #8	ENSGT00620000087966.a #10	ENSGT00390000009517 #11	ENSGT00390000006223 #12	ENSGT00390000005700 #13	ENSGT00940000156613 #14	ENSGT00940000156816 #15	ENSGT01030000234575.c.a.a.a.a.b.b.a #16	ENSGT00940000174567	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.b #17	ENSGT01030000234575.c.a.a.a.a.b.b.b #18	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.a.b #19	ENSGT01030000234575.c.a.a.a.a.b.a.a.b #20	ENSGT00940000156145 #21	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00940000164930.a #24	ENSGT00940000155693.a.b #25	ENSGT01030000234625.B.d.c.a #26	ENSGT00390000010925 #27	ENSGT00940000162910 #28	ENSGT00940000155747.g.a #30	ENSGT00390000012060 #31	ENSGT00410000025698.b #32	ENSGT00940000153433.A.f #33	ENSGT00940000154790.b.a.b #34	ENSGT00930000151014.q #35	ENSGT00940000159815 #36	ENSGT00940000154297.A.g.a	ENSGT00940000159057
Japanese Medaka HdrR	MODERN SPECIES	14	zgc:163014 (ENSORLG00000016320) #7	tmed8 (ENSORLG00000016326) #8	ATG2B (ENSORLG00000016349) #10	npc2.1 (ENSORLG00000022170) #12	gskip (ENSORLG00000016354) #11	isca2 (ENSORLG00000016363) #13	EML5 (ENSORLG00000016408) #14	ENSORLG00000016451 #16	ttc8 (ENSORLG00000016437) #15	ENSORLG00000016456 #17	ENSORLG00000028807 #18	ENSORLG00000025036 #19	ENSORLG00000026672 #20	ENSORLG00000029477 #20	NEK9 (ENSORLG00000016466) #21	ENSORLG00000028769 #22	ENSORLG00000016499 #23	ENSORLG00000016509 #24	JDP2 (ENSORLG00000029498) #25	FLVCR2 (ENSORLG00000016522) #26	ERG28 (ENSORLG00000016527) #27	ENSORLG00000024651 #28	tgfb3 (ENSORLG00000016565) #30	IFT43 (ENSORLG00000016572) #31	GPATCH2L (ENSORLG00000022664) #32	esrrb (ENSORLG00000016581) #33	prox2 (ENSORLG00000016587) #34	dlst (ENSORLG00000016623) #35	RPS6KL1 (ENSORLG00000016629) #36	LRRC74A (ENSORLG00000016633)	ENSORLG00000016639
Chinese medaka	MODERN SPECIES	2368																ENSOSIG00000012951 #22
Oryzias_b	ANCESTRAL SPECIES	12	ENSGT00530000063651.b #8	ENSGT00950000183044.a.a.b #9	ENSGT00620000087966.a #10	ENSGT00390000009517 #11	ENSGT00390000006223 #12	ENSGT00390000005700 #13	ENSGT00940000156613 #14	ENSGT00940000156816 #15	ENSGT01030000234575.c.a.a.a.a.b.b.a #16	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.b #17	ENSGT01030000234575.c.a.a.a.a.b.b.b #18	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.a.a.a #19	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.a.a.b #19	ENSGT01030000234575.c.a.a.a.a.b.a.a.b #20	ENSGT00940000156145 #21	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00940000164930.a #24	ENSGT00940000155693.a.b #25	ENSGT01030000234625.B.d.c.a #26	ENSGT00390000010925 #27	ENSGT00940000162910 #28	ENSGT00940000162939 #29	ENSGT00940000155747.g.a #30	ENSGT00390000012060 #31	ENSGT00410000025698.b #32	ENSGT00940000153433.A.f #33	ENSGT00940000154790.b.a.b #34	ENSGT00930000151014.q #35	ENSGT00940000159815 #36	ENSGT00940000154297.A.g.a
Indian medaka	MODERN SPECIES		ENSOMEG00000021655 #10	ENSOMEG00000021632 #9	ENSOMEG00000021616 #10	npc2.1 (ENSOMEG00000021603) #12	gskip (ENSOMEG00000021589) #11	isca2 (ENSOMEG00000021582) #13	EML5 (ENSOMEG00000021512) #14	ttc8 (ENSOMEG00000021289) #15	ENSOMEG00000021398 #16	ENSOMEG00000021211 #17	ENSOMEG00000021194 #18	ENSOMEG00000021178 #19	ENSOMEG00000021163 #19	ENSOMEG00000021145 #19	NEK9 (ENSOMEG00000021129) #21	ENSOMEG00000021096 #22	ENSOMEG00000021076 #23	ENSOMEG00000020995 #24	JDP2 (ENSOMEG00000020954) #25	FLVCR2 (ENSOMEG00000020912) #26	ERG28 (ENSOMEG00000020883) #27	ENSOMEG00000020849 #28	ENSOMEG00000020840 #29	tgfb3 (ENSOMEG00000020809) #30	IFT43 (ENSOMEG00000020751) #31	GPATCH2L (ENSOMEG00000020697) #32	ESRRB (ENSOMEG00000020638) #33	prox2 (ENSOMEG00000020556) #34	dlst (ENSOMEG00000020530) #35	RPS6KL1 (ENSOMEG00000020459) #36	ANGEL1 (ENSOMEG00000020430)
Javanese ricefish	MODERN SPECIES	14	tmed8 (ENSOJAG00000005525) #8	NOXRED1 (ENSOJAG00000005479) #9	ATG2B (ENSOJAG00000005376) #10	gskip (ENSOJAG00000005347) #11	npc2.1 (ENSOJAG00000005342) #12	isca2 (ENSOJAG00000005334) #13	EML5 (ENSOJAG00000005258) #14	ttc8 (ENSOJAG00000005178) #15	ENSOJAG00000005164 #16	ENSOJAG00000005156 #17	ENSOJAG00000005144	ENSOJAG00000005100 #19	ENSOJAG00000005078 #19	ENSOJAG00000005066 #20	NEK9 (ENSOJAG00000004956) #21	ENSOJAG00000004937 #22	ENSOJAG00000004920 #23	ENSOJAG00000004732 #24	JDP2 (ENSOJAG00000004690) #25	FLVCR2 (ENSOJAG00000004190) #26	ERG28 (ENSOJAG00000004081) #27	ENSOJAG00000003950 #28	tgfb3 (ENSOJAG00000003928) #30	IFT43 (ENSOJAG00000003918) #31	GPATCH2L (ENSOJAG00000003875) #32	ESRRB (ENSOJAG00000003699) #33	prox2 (ENSOJAG00000003608) #34	dlst (ENSOJAG00000003574) #35	RPS6KL1 (ENSOJAG00000022916) #36	LRRC74A (ENSOJAG00000022909)	ANGEL1 (ENSOJAG00000022907)
Cyprinodontiformes	ANCESTRAL SPECIES	23	ENSGT00390000006580	ENSGT00940000164710 #7	ENSGT00530000063651.b #8	ENSGT00950000183044.a.a.b #9	ENSGT00620000087966.a #10	ENSGT00390000009517 #11	ENSGT00390000006223 #12	ENSGT00390000005700 #13	ENSGT00940000156613 #14	ENSGT00940000156816 #15	ENSGT01030000234575.c.a.a.a.a.b.b.a #16	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.b #17	ENSGT01030000234575.c.a.a.a.a.b.b.b #18	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.a #19	ENSGT00940000156145 #21	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00940000164930.a #24	ENSGT00940000155693.a.b #25	ENSGT01030000234625.B.d.c.a #26	ENSGT00390000010925 #27	ENSGT00940000162910 #28	ENSGT00940000177781	ENSGT00940000155747.g.a #30	ENSGT00390000012060 #31	ENSGT00410000025698.b #32	ENSGT00940000153433.A.f #33	ENSGT00940000154790.b.a.b #34	ENSGT00930000151014.q #35	ENSGT00940000159815 #36	ENSGT00940000155454.w.a.b #37
Aplocheiloidei	ANCESTRAL SPECIES	15	ENSGT00390000006580	ENSGT00940000164710 #7	ENSGT00530000063651.b #8	ENSGT00950000183044.a.a.b #9	ENSGT00620000087966.a #10	ENSGT00390000009517 #11	ENSGT00390000006223 #12	ENSGT00390000005700 #13	ENSGT00940000156613 #14	ENSGT00940000156816 #15	ENSGT01030000234575.c.a.a.a.a.b.b.a #16	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.b #17	ENSGT01030000234575.c.a.a.a.a.b.b.b #18	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.a #19	ENSGT00940000156145 #21	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00940000164930.a #24	ENSGT00940000155693.a.b #25	ENSGT01030000234625.B.d.c.a #26	ENSGT00390000010925 #27	ENSGT00940000162910 #28	ENSGT00940000155747.g.a #30	ENSGT00390000012060 #31	ENSGT00410000025698.b #32	ENSGT00940000153433.A.f #33	ENSGT00940000154790.b.a.b #34	ENSGT00930000151014.q #35	ENSGT00940000159815 #36	ENSGT00940000155454.w.a.b #37	ENSGT00940000155454.w.a.a ##37
Mangrove rivulus	MODERN SPECIES	1	zgc:163014 (ENSKMAG00000003393) #7	tmed8 (ENSKMAG00000003386) #8	NOXRED1 (ENSKMAG00000003374) #9	ATG2B (ENSKMAG00000003284) #10	ENSKMAG00000003248 #10	gskip (ENSKMAG00000003233) #11	npc2.1 (ENSKMAG00000003135) #12	isca2 (ENSKMAG00000003115) #13	EML5 (ENSKMAG00000002983) #14	ttc8 (ENSKMAG00000002905) #15	ENSKMAG00000002881 #16	ENSKMAG00000002868 #17	ENSKMAG00000002860 #18	ENSKMAG00000002854 #19	NEK9 (ENSKMAG00000002833) #21	ENSKMAG00000002818 #22	ENSKMAG00000002802 #23	ENSKMAG00000002599 #24	JDP2 (ENSKMAG00000002558) #25	FLVCR2 (ENSKMAG00000002511) ##26	ERG28 (ENSKMAG00000002483) #27	ENSKMAG00000002437 #28	tgfb3 (ENSKMAG00000002413) #30	IFT43 (ENSKMAG00000002368) #31	GPATCH2L (ENSKMAG00000002351) #32	ESRRB (ENSKMAG00000002284) #33	prox2 (ENSKMAG00000002267) #34	dlst (ENSKMAG00000002252) #35	RPS6KL1 (ENSKMAG00000002235) #36	ENSKMAG00000002222 #37	ENSKMAG00000002205 ##37
Turquoise killifish	MODERN SPECIES	1625	NGB (ENSNFUG00015021626)	coq6 (ENSNFUG00015021634)	ENTPD5 (ENSNFUG00015021720)	ENSNFUG00015021761	ALDH6A1 (ENSNFUG00015021782)	gstz1 (ENSNFUG00015022022)	zgc:163014 (ENSNFUG00015022030) #7	tmed8 (ENSNFUG00015022039) #8	gskip (ENSNFUG00015022080) #11	ISCA2 (ENSNFUG00015022087) #13	EML5 (ENSNFUG00015022102) #14	ttc8 (ENSNFUG00015022143) #15	ENSNFUG00015022179 #16	ENSNFUG00015022182	ENSNFUG00015022184 #19	ENSNFUG00015022220 #22	ENSNFUG00015022229 #23	ENSNFUG00015012380 #24	JDP2 (ENSNFUG00015012547) #25	FLVCR2 (ENSNFUG00015012556) #26	ERG28 (ENSNFUG00015012618) #27	ENSNFUG00015012630 #28	TGFB3 (ENSNFUG00015012658) #30	IFT43 (ENSNFUG00015012668) #31	GPATCH2L (ENSNFUG00015012681) #32	ESRRB (ENSNFUG00015012693) #33	prox2 (ENSNFUG00015012731) #34	DLST (ENSNFUG00015012758) #35	RPS6KL1 (ENSNFUG00015012869) #36	HSD17B8 (ENSNFUG00015012901)	ENSNFUG00015012991
Cyprinodontoidei	ANCESTRAL SPECIES	8	ENSGT00390000006580	ENSGT00940000164710 #7	ENSGT00530000063651.b #8	ENSGT00950000183044.a.a.b #9	ENSGT00620000087966.a #10	ENSGT00390000009517 #11	ENSGT00390000006223 #12	ENSGT00390000005700 #13	ENSGT00940000156613 #14	ENSGT00940000156816 #15	ENSGT01030000234575.c.a.a.a.a.b.b.a #16	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.b #17	ENSGT01030000234575.c.a.a.a.a.b.b.b #18	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.a #19	ENSGT00940000156145 #21	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00940000164930.a #24	ENSGT00940000155693.a.b #25	ENSGT01030000234625.B.d.c.a #26	ENSGT00390000010925 #27	ENSGT00940000162910 #28	ENSGT00940000177781	ENSGT00940000155747.g.a #30	ENSGT00390000012060 #31	ENSGT00410000025698.b #32	ENSGT00940000153433.A.f #33	ENSGT00940000154790.b.a.b #34	ENSGT00930000151014.q #35	ENSGT00940000159815 #36	ENSGT00940000155454.w.a.a ##37
Poeciliinae	ANCESTRAL SPECIES	8	ENSGT00390000006580	ENSGT00940000164710 #7	ENSGT00530000063651.b #8	ENSGT00950000183044.a.a.b #9	ENSGT00620000087966.a #10	ENSGT00390000009517 #11	ENSGT00390000006223 #12	ENSGT00390000005700 #13	ENSGT00940000156613 #14	ENSGT00940000156816 #15	ENSGT01030000234575.c.a.a.a.a.b.b.a #16	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.b #17	ENSGT01030000234575.c.a.a.a.a.b.b.b #18	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.a #19	ENSGT00940000156145 #21	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00940000164930.a #24	ENSGT00940000155693.a.b #25	ENSGT01030000234625.B.d.c.a #26	ENSGT00390000010925 #27	ENSGT00940000162910 #28	ENSGT00940000155747.g.a #30	ENSGT00390000012060 #31	ENSGT00410000025698.b #32	ENSGT00940000153433.A.f #33	ENSGT00940000154790.b.a.b #34	ENSGT00930000151014.q #35	ENSGT00940000159815 #36	ENSGT00940000155454.w.a.a ##37	ENSGT00940000155454.w.b ##37
Poecilia	ANCESTRAL SPECIES	10	ENSGT00390000006580	ENSGT00940000164710 #7	ENSGT00530000063651.b #8	ENSGT00950000183044.a.a.b #9	ENSGT00620000087966.a #10	ENSGT00390000009517 #11	ENSGT00390000006223 #12	ENSGT00390000005700 #13	ENSGT00940000156613 #14	ENSGT00940000156816 #15	ENSGT01030000234575.c.a.a.a.a.b.b.a #16	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.b #17	ENSGT01030000234575.c.a.a.a.a.b.b.b #18	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.a #19	ENSGT00940000156145 #21	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00940000164930.a #24	ENSGT00940000155693.a.b #25	ENSGT01030000234625.B.d.c.a #26	ENSGT00390000010925 #27	ENSGT00940000162910 #28	ENSGT00940000155747.g.a #30	ENSGT00390000012060 #31	ENSGT00410000025698.b #32	ENSGT00940000153433.A.f #33	ENSGT00940000154790.b.a.b #34	ENSGT00930000151014.q #35	ENSGT00940000159815 #36	ENSGT00940000155454.w.a.a ##37	ENSGT00940000155454.w.b ##37
NAME_6	ANCESTRAL SPECIES	6	ENSGT00530000063651.b #8	ENSGT00950000183044.a.a.b #9	ENSGT00620000087966.a #10	ENSGT00390000009517.s #11	ENSGT00390000006223.c #12	ENSGT00390000009517.t #11	ENSGT00390000006223.d #12	ENSGT00390000005700 #13	ENSGT00940000156613 #14	ENSGT00940000156816 #15	ENSGT01030000234575.c.a.a.a.a.b.b.a #16	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.b #17	ENSGT01030000234575.c.a.a.a.a.b.b.b #18	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.a #19	ENSGT00940000156145 #21	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00940000164930.a #24	ENSGT00940000155693.a.b #25	ENSGT01030000234625.B.d.c.a #26	ENSGT00390000010925 #27	ENSGT00940000162910 #28	ENSGT00940000155747.g.a #30	ENSGT00390000012060 #31	ENSGT00410000025698.b #32	ENSGT00940000153433.A.f #33	ENSGT00940000154790.b.a.b #34	ENSGT00930000151014.q #35	ENSGT00940000159815 #36	ENSGT00940000155454.w.a.a ##37	ENSGT00940000155454.w.b ##37
Sailfin molly	MODERN SPECIES	364						ENSPLAG00000008095 #10	gskip (ENSPLAG00000008109) #11	NPC2 (ENSPLAG00000008128) #12	isca2 (ENSPLAG00000008136) #13	EML5 (ENSPLAG00000008373) #14	ttc8 (ENSPLAG00000008441) #15	ENSPLAG00000008463 #16	ENSPLAG00000008500 #18	ENSPLAG00000008590 #19	NEK9 (ENSPLAG00000008620) #21	ENSPLAG00000008628 #22	ENSPLAG00000008640 #23	ENSPLAG00000009128 #24	FLVCR2 (ENSPLAG00000009186) #26	ERG28 (ENSPLAG00000009211) #27	ENSPLAG00000009224 #28	ENSPLAG00000009247 #28	tgfb3 (ENSPLAG00000009277) #30	IFT43 (ENSPLAG00000009287) #31	GPATCH2L (ENSPLAG00000009312) #32
Amazon molly	MODERN SPECIES	282	tmed8 (ENSPFOG00000015795) #8	ENSPFOG00000015794 #9	gskip (ENSPFOG00000015740) #11	NPC2 (ENSPFOG00000015721) #12	ATG2B (ENSPFOG00000015576) #10	gskip (ENSPFOG00000015548) #11	NPC2 (ENSPFOG00000015546) #12	isca2 (ENSPFOG00000015543) #13	EML5 (ENSPFOG00000015280) #14	ttc8 (ENSPFOG00000015227) #15	ENSPFOG00000015213 #16	ENSPFOG00000022333 #17	ENSPFOG00000015203 #18	ENSPFOG00000024162 #19	NEK9 (ENSPFOG00000015097) #21	ENSPFOG00000015092 #22	ENSPFOG00000015041 #23	ENSPFOG00000015030 #24	JDP2 (ENSPFOG00000015014) #25	FLVCR2 (ENSPFOG00000014890) #26	ERG28 (ENSPFOG00000014865) #27	ENSPFOG00000014806 #28	tgfb3 (ENSPFOG00000014756) #30	IFT43 (ENSPFOG00000014703) #31	GPATCH2L (ENSPFOG00000014687) #32	ESRRB (ENSPFOG00000014654) #33	prox2 (ENSPFOG00000014635) #34	dlst (ENSPFOG00000014514) #35	RPS6KL1 (ENSPFOG00000014419) #36	ENSPFOG00000014381 ##37	ENSPFOG00000014372 ##37
Guppy	MODERN SPECIES	453	aldh6a1 (ENSPREG00000010333)	gstz1 (ENSPREG00000010267)	zgc:163014 (ENSPREG00000010237) #7	tmed8 (ENSPREG00000010221) #8	NOXRED1 (ENSPREG00000010209) #9	ATG2B (ENSPREG00000010076) #10	gskip (ENSPREG00000010046) #11	npc2.1 (ENSPREG00000009939) #12	isca2 (ENSPREG00000009920) #13	EML5 (ENSPREG00000009770) #14	ttc8 (ENSPREG00000009689) #15	ENSPREG00000009739 #16	ENSPREG00000009670 #18	ENSPREG00000009658 #19	NEK9 (ENSPREG00000009628) #21	ENSPREG00000009615 #22	ENSPREG00000009604 #23	ENSPREG00000009598 #24	FLVCR2 (ENSPREG00000009584) #26	ERG28 (ENSPREG00000009563) #27	ENSPREG00000009465 #28	tgfb3 (ENSPREG00000009401) #30	IFT43 (ENSPREG00000009385) #31	GPATCH2L (ENSPREG00000009374) #32	ESRRB (ENSPREG00000009351) #33	prox2 (ENSPREG00000009326) #34	dlst (ENSPREG00000009199) #35	RPS6KL1 (ENSPREG00000009143) #36	ENSPREG00000009124 ##37	ENSPREG00000009113 ##37	ENSPREG00000009102
Platyfish	MODERN SPECIES	10	zgc:163014 (ENSXMAG00000015067) #7	tmed8 (ENSXMAG00000026398) #8	NOXRED1 (ENSXMAG00000024964) #9	ATG2B (ENSXMAG00000014982) #10	ENSXMAG00000023766 #10	gskip (ENSXMAG00000021582) #11	npc2.1 (ENSXMAG00000014967) #12	isca2 (ENSXMAG00000014962) #13	EML5 (ENSXMAG00000014899) #14	ttc8 (ENSXMAG00000014881) #15	ENSXMAG00000025642 #16	ENSXMAG00000020956 #17	ENSXMAG00000028329 #18	ENSXMAG00000014872 #19	NEK9 (ENSXMAG00000014847) #21	ENSXMAG00000028286 #22	ENSXMAG00000014821 #23	ENSXMAG00000021870 #24	JDP2 (ENSXMAG00000014805) #25	FLVCR2 (ENSXMAG00000026309) #26	ERG28 (ENSXMAG00000014769) #27	ENSXMAG00000014737 #28	tgfb3 (ENSXMAG00000014713) #30	IFT43 (ENSXMAG00000014700) #31	GPATCH2L (ENSXMAG00000029501) #32	ESRRB (ENSXMAG00000014672) #33	prox2 (ENSXMAG00000014663) #34	dlst (ENSXMAG00000014638) #35	RPS6KL1 (ENSXMAG00000014631) #36	ENSXMAG00000014621 ##37	ENSXMAG00000014617 ##37
NAME_4	ANCESTRAL SPECIES	18	ENSGT00940000154427.A.c	ENSGT00940000156110.c.a	ENSGT00390000006580	ENSGT00940000164710 #7	ENSGT00530000063651.b #8	ENSGT00950000183044.a.a.b #9	ENSGT00620000087966.a #10	ENSGT00390000009517 #11	ENSGT00390000006223 #12	ENSGT00390000005700 #13	ENSGT00940000156613 #14	ENSGT00940000156816 #15	ENSGT01030000234575.c.a.a.a.a.b.b.a #16	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.b #17	ENSGT00940000156145 #21	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00940000164930.a #24	ENSGT00940000155693.a.b #25	ENSGT01030000234625.B.d.d.b.a ##26	ENSGT00390000010925 #27	ENSGT00940000162910 #28	ENSGT00940000177781	ENSGT00940000155747.g.a #30	ENSGT00390000012060 #31	ENSGT00410000025698.b #32	ENSGT00940000153433.A.f #33	ENSGT00940000154790.b.a.b #34	ENSGT00930000151014.q #35	ENSGT00940000159815 #36	ENSGT00940000155454.w.a.a ##37
Sheepshead minnow	MODERN SPECIES	490	BBOF1 (ENSCVAG00000022881)	aldh6a1 (ENSCVAG00000022872)	gstz1 (ENSCVAG00000022840)	zgc:163014 (ENSCVAG00000022830) #7	tmed8 (ENSCVAG00000022808) #8	ATG2B (ENSCVAG00000022803) #10	ENSCVAG00000022783 #10	gskip (ENSCVAG00000022739) #11	npc2.1 (ENSCVAG00000022728) #12	isca2 (ENSCVAG00000022712) #13	EML5 (ENSCVAG00000022697) #14	ttc8 (ENSCVAG00000022602) #15	ENSCVAG00000022550 #16	ENSCVAG00000022544 #17	NEK9 (ENSCVAG00000022531) #21	ENSCVAG00000022493 #22	MLH3 (ENSCVAG00000022485) #23	ENSCVAG00000022477 #24	JDP2 (ENSCVAG00000022457) #25	FLVCR2 (ENSCVAG00000022444) ##26	ERG28 (ENSCVAG00000022413) #27	ENSCVAG00000022405 #28	ENSCVAG00000022394	tgfb3 (ENSCVAG00000000577) #30	IFT43 (ENSCVAG00000022374) #31	GPATCH2L (ENSCVAG00000022365) #32	ESRRB (ENSCVAG00000022357) #33	prox2 (ENSCVAG00000022322) #34	dlst (ENSCVAG00000022292) #35	RPS6KL1 (ENSCVAG00000022286) #36	ENSCVAG00000022271 ##37
Mummichog	MODERN SPECIES	99																ENSFHEG00000017548 #22	ENSFHEG00000017559 #23	ENSFHEG00000017571 #23
Ovalentaria_B	ANCESTRAL SPECIES	18	ENSGT00940000164710 #7	ENSGT00530000063651.b #8	ENSGT00950000183044.a.a.b #9	ENSGT00620000087966.a #10	ENSGT00390000009517 #11	ENSGT00390000006223 #12	ENSGT00390000005700 #13	ENSGT00940000156613 #14	ENSGT00940000156816 #15	ENSGT01030000234575.c.a.a.a.a.b.b.a #16	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.b #17	ENSGT01030000234575.c.a.a.a.a.b.b.b #18	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.a #19	ENSGT01030000234575.c.a.a.a.a.b.a.a.b #20	ENSGT00940000156145 #21	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00940000164930.a #24	ENSGT00940000155693.a.b #25	ENSGT01030000234625.B.d.c.a #26	ENSGT01030000234625.B.d.d.b.a ##26	ENSGT00390000010925 #27	ENSGT00940000162910 #28	ENSGT00940000162939 #29	ENSGT00940000155747.g.a #30	ENSGT00390000012060 #31	ENSGT00410000025698.b #32	ENSGT00940000153433.A.f #33	ENSGT00940000154790.b.a.b #34	ENSGT00930000151014.q #35	ENSGT00940000159815 #36
Cichlidae	ANCESTRAL SPECIES	22	ENSGT00390000006580	ENSGT00940000164710 #7	ENSGT00530000063651.b #8	ENSGT00950000183044.a.a.b #9	ENSGT00620000087966.a #10	ENSGT00390000009517 #11	ENSGT00390000006223 #12	ENSGT00390000005700 #13	ENSGT00940000156613.h #14	ENSGT00940000156816 #15	ENSGT01030000234575.c.a.a.a.a.b.b.a #16	ENSGT00940000174567	ENSGT01030000234575.c.a.a.a.a.b.b.b #18	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.a #19	ENSGT00940000156145 #21	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00940000164930.a #24	ENSGT00940000155693.a.b #25	ENSGT01030000234625.B.d.c.a #26	ENSGT01030000234625.B.d.d.b.a ##26	ENSGT00390000010925 #27	ENSGT00940000162910 #28	ENSGT00940000177781	ENSGT00940000155747.g.a #30	ENSGT00390000012060 #31	ENSGT00410000025698.b #32	ENSGT00940000153433.A.f #33	ENSGT00940000154790.b.a.b #34	ENSGT00930000151014.q #35	ENSGT00940000159815 #36
Pseudocrenilabrinae	ANCESTRAL SPECIES	8	ENSGT00390000009517 #11	ENSGT00390000006223 #12	ENSGT00390000005700 #13	ENSGT00940000156613.h #14	ENSGT00940000156816 #15	ENSGT01030000234575.c.a.a.a.a.b.b.a #16	ENSGT00940000174567	ENSGT00990000208419.a	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.a.c.a #19	ENSGT01030000234575.c.a.a.a.a.b.b.b.d.b #18	ENSGT01030000234575.c.a.a.a.a.b.b.b.d.a #18	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.a.d #19	ENSGT01030000234575.c.a.a.a.a.b.b.b.c.b #18	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.a.c.b #19	ENSGT00940000156145 #21	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00940000164930.a #24	ENSGT00940000155693.a.b #25	ENSGT01030000234625.B.d.c.a #26	ENSGT01030000234625.B.d.d.b.a ##26	ENSGT00390000010925 #27	ENSGT00940000162910 #28	ENSGT00940000177781	ENSGT00940000155747.g.a #30	ENSGT00390000012060 #31	ENSGT00410000025698.b #32	ENSGT00940000153433.A.f #33	ENSGT00940000154790.b.a.b #34	ENSGT00930000151014.q #35	ENSGT00940000159815 #36
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	6	ENSGT00620000087966.a #10	ENSGT00390000009517 #11	ENSGT00390000006223 #12	ENSGT00390000005700 #13	ENSGT00940000156613.h #14	ENSGT00940000156816 #15	ENSGT01030000234575.c.a.a.a.a.b.b.a #16	ENSGT00940000174567	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.a.c.a #19	ENSGT01030000234575.c.a.a.a.a.b.b.b.d.b #18	ENSGT01030000234575.c.a.a.a.a.b.b.b.d.a #18	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.a.d #19	ENSGT01030000234575.c.a.a.a.a.b.b.b.c.b #18	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.a.c.b #19	ENSGT00940000156145 #21	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00940000164930.a #24	ENSGT00940000155693.a.b #25	ENSGT01030000234625.B.d.c.a #26	ENSGT01030000234625.B.d.d.b.a ##26	ENSGT00390000010925 #27	ENSGT00940000162910 #28	ENSGT00940000177781	ENSGT00940000155747.g.a #30	ENSGT00390000012060 #31	ENSGT00410000025698.b #32	ENSGT00940000153433.A.f #33	ENSGT00940000154790.b.a.b #34	ENSGT00930000151014.q #35	ENSGT00940000159815 #36
Haplochromini	ANCESTRAL SPECIES	7	ENSGT00950000183044.a.a.b #9	ENSGT00620000087966.a #10	ENSGT00390000009517 #11	ENSGT00390000006223 #12	ENSGT00390000005700 #13	ENSGT00940000156613.h #14	ENSGT00940000156816 #15	ENSGT01030000234575.c.a.a.a.a.b.b.a #16	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.b #17	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.a.c.a #19	ENSGT01030000234575.c.a.a.a.a.b.b.b.d.b #18	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.a.d #19	ENSGT01030000234575.c.a.a.a.a.b.b.b.c.b #18	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.a.c.b #19	ENSGT00940000156145 #21	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00940000164930.a #24	ENSGT00940000155693.a.b #25	ENSGT01030000234625.B.d.c.a #26	ENSGT01030000234625.B.d.d.b.a ##26	ENSGT00390000010925 #27	ENSGT00940000162910 #28	ENSGT00940000177781	ENSGT00940000155747.g.a #30	ENSGT00390000012060 #31	ENSGT00410000025698.b #32	ENSGT00940000153433.A.f #33	ENSGT00940000154790.b.a.b #34	ENSGT00930000151014.q #35	ENSGT00940000159815 #36
Burton s mouthbrooder	MODERN SPECIES	285	tmed8 (ENSHBUG00000019613) #8	NOXRED1 (ENSHBUG00000019593) #9	ATG2B (ENSHBUG00000019549) #10	gskip (ENSHBUG00000019220) #11	npc2.1 (ENSHBUG00000019206) #12	isca2 (ENSHBUG00000019196) #13	EML5 (ENSHBUG00000019180) #14	ttc8 (ENSHBUG00000019056) #15	ENSHBUG00000018964 #16	ENSHBUG00000018947 #17	ENSHBUG00000018926 #19	ENSHBUG00000018906 #18	ENSHBUG00000018894 #18	ENSHBUG00000018865 #19	NEK9 (ENSHBUG00000018851) #21	ENSHBUG00000018771 #22	MLH3 (ENSHBUG00000018766) #23	ENSHBUG00000018749 #24	JDP2 (ENSHBUG00000018738) #25	FLVCR2 (ENSHBUG00000018722) ##26	ERG28 (ENSHBUG00000018687) #27	ENSHBUG00000018667 #28	tgfb3 (ENSHBUG00000018621) #30	IFT43 (ENSHBUG00000018591) #31	GPATCH2L (ENSHBUG00000018530) #32	ESRRB (ENSHBUG00000018505) #33	prox2 (ENSHBUG00000018457) #34	dlst (ENSHBUG00000018444) #35	RPS6KL1 (ENSHBUG00000018411) #36	ENSHBUG00000000936 ##37	LRRC74A (ENSHBUG00000018359)
Haplochromini_A	ANCESTRAL SPECIES	7	ENSGT00620000087966.a #10	ENSGT00390000009517 #11	ENSGT00390000006223 #12	ENSGT00390000005700 #13	ENSGT00940000156613.h #14	ENSGT00940000156816 #15	ENSGT01030000234575.c.a.a.a.a.b.b.a #16	ENSGT00940000174567	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.b #17	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.a.c.a #19	ENSGT01030000234575.c.a.a.a.a.b.b.b.d.b #18	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.a.d #19	ENSGT01030000234575.c.a.a.a.a.b.b.b.c.b #18	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.a.c.b #19	ENSGT00940000156145 #21	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00940000164930.a #24	ENSGT00940000155693.a.b #25	ENSGT01030000234625.B.d.c.a #26	ENSGT00390000010925 #27	ENSGT00940000162910 #28	ENSGT00940000177781	ENSGT00940000155747.g.a #30	ENSGT00390000012060 #31	ENSGT00410000025698.b #32	ENSGT00940000153433.A.f #33	ENSGT00940000154790.b.a.b #34	ENSGT00930000151014.q #35	ENSGT00940000159815 #36	ENSGT00940000155454.w.a.a ##37
Haplochromini_B	ANCESTRAL SPECIES	13	ENSGT00940000175915	ENSGT00620000087966.a #10	ENSGT00390000009517 #11	ENSGT00390000006223 #12	ENSGT00390000005700 #13	ENSGT00940000156613.h #14	ENSGT00940000156816 #15	ENSGT01030000234575.c.a.a.a.a.b.b.a #16	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.b #17	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.a.c.a #19	ENSGT01030000234575.c.a.a.a.a.b.b.b.d.b #18	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.a.d #19	ENSGT01030000234575.c.a.a.a.a.b.b.b.c.b #18	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.a.c.b #19	ENSGT00940000156145 #21	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00940000164930.a #24	ENSGT00940000155693.a.b #25	ENSGT01030000234625.B.d.c.a #26	ENSGT00390000010925 #27	ENSGT00940000162910 #28	ENSGT00940000177781	ENSGT00940000155747.g.a #30	ENSGT00390000012060 #31	ENSGT00410000025698.b #32	ENSGT00940000153433.A.f #33	ENSGT00940000154790.b.a.b #34	ENSGT00930000151014.q #35	ENSGT00940000159815 #36	ENSGT00940000155454.w.a.a ##37
Eastern happy	MODERN SPECIES	10	tmed8 (ENSACLG00000023624) #8	ATG2B (ENSACLG00000023637) #10	gskip (ENSACLG00000023830) #11	npc2.1 (ENSACLG00000023844) #12	isca2 (ENSACLG00000023953) #13	EML5 (ENSACLG00000023969) #14	ttc8 (ENSACLG00000024073) #15	ENSACLG00000024117 #16	ENSACLG00000024128 #17	ENSACLG00000024140 #19	ENSACLG00000024144 #18	ENSACLG00000024146 #19	ENSACLG00000024153 #18	ENSACLG00000024344 #19	NEK9 (ENSACLG00000024366) #21	ENSACLG00000024424 #22	MLH3 (ENSACLG00000024432) #23	ENSACLG00000024472 #24	JDP2 (ENSACLG00000024478) #25	FLVCR2 (ENSACLG00000024486) #26	ERG28 (ENSACLG00000024499) #27	ENSACLG00000024531 #28	ENSACLG00000024537 #28	tgfb3 (ENSACLG00000024559) #30	IFT43 (ENSACLG00000024588) #31	GPATCH2L (ENSACLG00000024682) #32	ESRRB (ENSACLG00000024711) #33	prox2 (ENSACLG00000024761) #34	dlst (ENSACLG00000024780) #35	RPS6KL1 (ENSACLG00000024821) #36	ENSACLG00000024844 ##37
Zebra mbuna	MODERN SPECIES	11	tmed8 (ENSMZEG00005020739) #8	ENSMZEG00005020743	ATG2B (ENSMZEG00005020754) #10	gskip (ENSMZEG00005020767) #11	npc2.1 (ENSMZEG00005020770) #12	isca2 (ENSMZEG00005020772) #13	EML5 (ENSMZEG00005020778) #14	ttc8 (ENSMZEG00005020788) #15	ENSMZEG00005020797 #16	ENSMZEG00005020800 #17	ENSMZEG00005020803 #19	ENSMZEG00005020806 #18	ENSMZEG00005020810 #18	ENSMZEG00005020813 #19	NEK9 (ENSMZEG00005020817) #21	ENSMZEG00005020826 #22	MLH3 (ENSMZEG00005020828) #23	ENSMZEG00005020833 #24	JDP2 (ENSMZEG00005020836) #25	FLVCR2 (ENSMZEG00005020841) #26	ENSMZEG00005020846	ERG28 (ENSMZEG00005020851) #27	ENSMZEG00005020854 #28	ENSMZEG00005020858	tgfb3 (ENSMZEG00005020864) #30	IFT43 (ENSMZEG00005020870) #31	GPATCH2L (ENSMZEG00005020876) #32	ESRRB (ENSMZEG00005020880) #33	prox2 (ENSMZEG00005020890) #34	dlst (ENSMZEG00005020939) #35	RPS6KL1 (ENSMZEG00005020941) #36
P. nyererei	MODERN SPECIES	418													ENSPNYG00000021367 #18	ENSPNYG00000021385 #19	NEK9 (ENSPNYG00000021405) #21	ENSPNYG00000021426 #22	ENSPNYG00000021432 #23	ENSPNYG00000021445 #23	ENSPNYG00000021461 #24	JDP2 (ENSPNYG00000021474) #25	FLVCR2 (ENSPNYG00000021487) ##26	ERG28 (ENSPNYG00000021518) #27	ENSPNYG00000021526 #28	ENSPNYG00000021536	tgfb3 (ENSPNYG00000021547) #30	IFT43 (ENSPNYG00000021561) #31	GPATCH2L (ENSPNYG00000021578) #32	ESRRB (ENSPNYG00000021595) #33	prox2 (ENSPNYG00000021606) #34	dlst (ENSPNYG00000021627) #35	RPS6KL1 (ENSPNYG00000021655) #36
Lyretail cichlid	MODERN SPECIES	299	gskip (ENSNBRG00000004640) #11	npc2.1 (ENSNBRG00000004628) #12	isca2 (ENSNBRG00000004609) #13	EML5 (ENSNBRG00000004484) #14	ttc8 (ENSNBRG00000004443) #15	ENSNBRG00000004432 #16	ENSNBRG00000004420 #17	ENSNBRG00000004402	ENSNBRG00000004394	ENSNBRG00000004378 #18	ENSNBRG00000004355 #18	ENSNBRG00000004315 #19	ENSNBRG00000004293	ENSNBRG00000004273 ##16	NEK9 (ENSNBRG00000004206) #21	ENSNBRG00000004194 #22	ENSNBRG00000004184	MLH3 (ENSNBRG00000004159) #23	ENSNBRG00000004137 #24	JDP2 (ENSNBRG00000004110) #25	ENSNBRG00000004097 #26	FLVCR2 (ENSNBRG00000004058) ##26	ERG28 (ENSNBRG00000004037) #27	ENSNBRG00000004022 #28	ENSNBRG00000004002 #28	ENSNBRG00000003977	tgfb3 (ENSNBRG00000003946) #30	IFT43 (ENSNBRG00000003925) #31	GPATCH2L (ENSNBRG00000003911) #32	ESRRB (ENSNBRG00000003887) #33	prox2 (ENSNBRG00000003860) #34
Nile tilapia	MODERN SPECIES	10	EML5 (ENSONIG00000020175) #14	ttc8 (ENSONIG00000020176) #15	ENSONIG00000020177 #17	ENSONIG00000040387 #18	ENSONIG00000028507 #19	ENSONIG00000043196	ENSONIG00000020181 #19	ENSONIG00000020179 #18	ENSONIG00000020180 #18	ENSONIG00000040533 #18	ENSONIG00000034205 #19	ENSONIG00000035684 #18	ENSONIG00000034187 #19	ENSONIG00000033262	NEK9 (ENSONIG00000020182) #21	ENSONIG00000020183 #22	MLH3 (ENSONIG00000020184) #23	ENSONIG00000020185 #24	JDP2 (ENSONIG00000020186) #25	FLVCR2 (ENSONIG00000020187) ##26	ERG28 (ENSONIG00000020188) #27	ENSONIG00000020189 #28	tgfb3 (ENSONIG00000020190) #30	IFT43 (ENSONIG00000037253) #31	GPATCH2L (ENSONIG00000020191) #32	ESRRB (ENSONIG00000020192) #33	prox2 (ENSONIG00000020193) #34	dlst (ENSONIG00000020194) #35	RPS6KL1 (ENSONIG00000020195) #36	ENSONIG00000020196 ##37	ENSONIG00000020197 ##37
Midas cichlid	MODERN SPECIES	150	zgc:163014 (ENSACIG00000007365) #7	tmed8 (ENSACIG00000007383) #8	ATG2B (ENSACIG00000007406) #10	gskip (ENSACIG00000007520) #11	npc2.1 (ENSACIG00000007526) #12	isca2 (ENSACIG00000007660) #13	EML5 (ENSACIG00000007683) #14	ttc8 (ENSACIG00000007783) #15	ENSACIG00000007814 #16	ENSACIG00000007829	ENSACIG00000007841 #18	ENSACIG00000007862	ENSACIG00000007883 #18	ENSACIG00000007938 #18	NEK9 (ENSACIG00000007963) #21	ENSACIG00000008009 #22	ENSACIG00000008029 #23	ENSACIG00000008052 #24	JDP2 (ENSACIG00000008079) #25	ENSACIG00000008112 ##26	FLVCR2 (ENSACIG00000008129) #26	ERG28 (ENSACIG00000008170) #27	ENSACIG00000008186 #28	ENSACIG00000008200	tgfb3 (ENSACIG00000008212) #30	IFT43 (ENSACIG00000008236) #31	GPATCH2L (ENSACIG00000008257) #32	ESRRB (ENSACIG00000008268) #33	prox2 (ENSACIG00000008285) #34	dlst (ENSACIG00000008305) #35	RPS6KL1 (ENSACIG00000008333) #36
Pomacentridae	ANCESTRAL SPECIES	19	ENSGT00940000164710 #7	ENSGT00530000063651.b #8	ENSGT00950000183044.a.a.b #9	ENSGT00620000087966.a #10	ENSGT00390000009517 #11	ENSGT00390000006223 #12	ENSGT00390000005700 #13	ENSGT00940000156613 #14	ENSGT00940000156816 #15	ENSGT01030000234575.c.a.a.a.a.b.b.a #16	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.b #17	ENSGT01030000234575.c.a.a.a.a.b.b.b #18	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.a #19	ENSGT01030000234575.c.a.a.a.a.b.a.a.b #20	ENSGT00940000156145 #21	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00940000164930.a #24	ENSGT00940000155693.a.b #25	ENSGT01030000234625.B.d.d.b.a ##26	ENSGT00390000010925 #27	ENSGT00940000162910 #28	ENSGT00940000162939 #29	ENSGT00940000155747.g.a.h #30	ENSGT00390000012060 #31	ENSGT00410000025698.b #32	ENSGT00940000153433.A.f #33	ENSGT00940000154790.b.a.b #34	ENSGT00930000151014.q #35	ENSGT00940000159815 #36	ENSGT00940000155454.w.a.a ##37
Pomacentridae_A	ANCESTRAL SPECIES	19	ENSGT00940000164710 #7	ENSGT00530000063651.b #8	ENSGT00950000183044.a.a.b #9	ENSGT00620000087966.a #10	ENSGT00390000009517 #11	ENSGT00390000006223 #12	ENSGT00390000005700 #13	ENSGT00940000156613 #14	ENSGT00940000156816 #15	ENSGT01030000234575.c.a.a.a.a.b.b.a #16	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.b #17	ENSGT01030000234575.c.a.a.a.a.b.b.b #18	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.a #19	ENSGT01030000234575.c.a.a.a.a.b.a.a.b #20	ENSGT00940000156145 #21	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00940000164930.a #24	ENSGT00940000155693.a.b #25	ENSGT01030000234625.B.d.d.b.a ##26	ENSGT00390000010925 #27	ENSGT00940000162910 #28	ENSGT00940000162939 #29	ENSGT00940000155747.g.a.h #30	ENSGT00390000012060 #31	ENSGT00410000025698.b #32	ENSGT00940000153433.A.f #33	ENSGT00940000154790.b.a.b #34	ENSGT00930000151014.q #35	ENSGT00940000159815 #36	ENSGT00940000155454.w.a.a ##37
Amphiprion	ANCESTRAL SPECIES	12	ENSGT00940000164710 #7	ENSGT00530000063651.b #8	ENSGT00950000183044.a.a.b #9	ENSGT00620000087966.a #10	ENSGT00390000009517 #11	ENSGT00390000006223 #12	ENSGT00390000005700 #13	ENSGT00940000156613 #14	ENSGT00940000156816 #15	ENSGT01030000234575.c.a.a.a.a.b.b.a #16	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.b #17	ENSGT01030000234575.c.a.a.a.a.b.b.b #18	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.a #19	ENSGT01030000234575.c.a.a.a.a.b.a.a.b #20	ENSGT00940000156145 #21	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00940000164930.a #24	ENSGT00940000155693.a.b #25	ENSGT01030000234625.B.d.d.b.a ##26	ENSGT00390000010925 #27	ENSGT00940000162910 #28	ENSGT00940000162939 #29	ENSGT00940000155747.g.a.h #30
Clown anemonefish	MODERN SPECIES	1431															NEK9 (ENSAOCG00000013138) #21	ENSAOCG00000013146 #22	ENSAOCG00000013184 #23	ENSAOCG00000013202 #24	JDP2 (ENSAOCG00000013212) #25	FLVCR2 (ENSAOCG00000013231) ##26	ERG28 (ENSAOCG00000013249) #27	ENSAOCG00000013283
Orange clownfish	MODERN SPECIES	9	gstz1 (ENSAPEG00000024491)	zgc:163014 (ENSAPEG00000024503) #7	tmed8 (ENSAPEG00000000322) #8	NOXRED1 (ENSAPEG00000000345) #9	ATG2B (ENSAPEG00000000393) #10	gskip (ENSAPEG00000000534) #11	npc2.1 (ENSAPEG00000000554) #12	isca2 (ENSAPEG00000000560) #13	EML5 (ENSAPEG00000000586) #14	ttc8 (ENSAPEG00000000736) #15	ENSAPEG00000000801 #16	ENSAPEG00000000832 #17	ENSAPEG00000000890 #18	ENSAPEG00000000904 #20	NEK9 (ENSAPEG00000000928) #21	ENSAPEG00000000944 #22	ENSAPEG00000000961 #23	ENSAPEG00000001019 #24	JDP2 (ENSAPEG00000001021) #25	FLVCR2 (ENSAPEG00000001034) ##26	ERG28 (ENSAPEG00000001045) #27	ENSAPEG00000001073 #28	ENSAPEG00000001097 #29	tgfb3 (ENSAPEG00000001156) #30	snx6 (ENSAPEG00000001199)	psma3 (ENSAPEG00000001270)	ENSAPEG00000001329	ENSAPEG00000001342	irf2bpl (ENSAPEG00000001359)	dact1 (ENSAPEG00000001412)	lgals3b (ENSAPEG00000001426)
Spiny chromis	MODERN SPECIES	154	gstz1 (ENSAPOG00000002595)	tmed8 (ENSAPOG00000000828) #8	NOXRED1 (ENSAPOG00000002643) #9	ATG2B (ENSAPOG00000002779) #10	gskip (ENSAPOG00000002810) #11	npc2.1 (ENSAPOG00000000060) #12	isca2 (ENSAPOG00000002937) #13	EML5 (ENSAPOG00000003064) #14	ttc8 (ENSAPOG00000003112) #15	ENSAPOG00000003121 #16	ENSAPOG00000000929 #17	ENSAPOG00000003145 #18	ENSAPOG00000003161 #19	ENSAPOG00000003174 #20	NEK9 (ENSAPOG00000003199) #21	ENSAPOG00000003214 #22	ENSAPOG00000003226 #23	ENSAPOG00000003235 #24	JDP2 (ENSAPOG00000003248) #25	FLVCR2 (ENSAPOG00000003292) ##26	ERG28 (ENSAPOG00000003330) #27	ENSAPOG00000003392 #28	tgfb3 (ENSAPOG00000003404) #30	IFT43 (ENSAPOG00000003418) #31	GPATCH2L (ENSAPOG00000003442) #32
Bicolor damselfish	MODERN SPECIES	244	zgc:163014 (ENSSPAG00000009950) #7	tmed8 (ENSSPAG00000009938) #8	NOXRED1 (ENSSPAG00000009929) #9	ATG2B (ENSSPAG00000009869) #10	gskip (ENSSPAG00000009855) #11	npc2.1 (ENSSPAG00000009838) #12	isca2 (ENSSPAG00000009824) #13	EML5 (ENSSPAG00000009735) #14	ttc8 (ENSSPAG00000009650) #15	ENSSPAG00000009635 #16	ENSSPAG00000009616 #17	ENSSPAG00000009603 #18	ENSSPAG00000009596 #19	ENSSPAG00000009588 #20	NEK9 (ENSSPAG00000009560) #21	ENSSPAG00000009542 #22	MLH3 (ENSSPAG00000009525) #23	ENSSPAG00000009516 #24	ENSSPAG00000009505 ##25	FLVCR2 (ENSSPAG00000009467) ##26	ERG28 (ENSSPAG00000009448) #27	ENSSPAG00000009438 #28	ENSSPAG00000009413 #29	tgfb3 (ENSSPAG00000009377) #30	IFT43 (ENSSPAG00000009354) #31	GPATCH2L (ENSSPAG00000009339) #32	ESRRB (ENSSPAG00000009297) #33	prox2 (ENSSPAG00000009278) #34	dlst (ENSSPAG00000009222) #35	RPS6KL1 (ENSSPAG00000009189) #36	ENSSPAG00000009174 ##37