Actinopterygii	ANCESTRAL SPECIES	720																ENSGT00390000011103.B #22	ENSGT00940000158847.d	ENSGT00940000164891
Neopterygii	ANCESTRAL SPECIES	568																ENSGT00390000011103.B #22	ENSGT00940000158847.d	ENSGT00940000164891
Osteoglossocephalai	ANCESTRAL SPECIES	13	ENSGT00940000154427.A	ENSGT00940000156110.c.a	ENSGT00390000006580	ENSGT00940000164710 #7	ENSGT00530000063651.b #8	ENSGT00950000183044.a.a.b	ENSGT00620000087966.a #9	ENSGT00390000009517 #10	ENSGT00390000006223 #11	ENSGT00390000005700 #12	ENSGT00940000156613 #13	ENSGT00940000156816 #14	ENSGT01020000230338.a.b.b.b	ENSGT00940000156145 #21	ENSGT00940000160947	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00550000074908	ENSGT00550000074954	ENSGT00940000159276	ENSGT00940000155693.b ##25	ENSGT00940000159745	ENSGT01030000234625.B.d.c #27	ENSGT00390000010925 #28	ENSGT00940000162910 #29	ENSGT00940000162939	ENSGT00940000155747.g.a #31	ENSGT00390000012060 #32	ENSGT00410000025698.b #33	ENSGT00940000153433.A.f #34	ENSGT00940000154790.b.a.b #35
Clupeocephala	ANCESTRAL SPECIES	17	ENSGT00940000154427.A	ENSGT00940000156110.c.a	ENSGT00390000006580	ENSGT00940000164710 #7	ENSGT00530000063651.b #8	ENSGT00950000183044.a.a.b	ENSGT00620000087966.a #9	ENSGT00390000009517 #10	ENSGT00390000006223 #11	ENSGT00390000005700 #12	ENSGT00940000156613 #13	ENSGT00940000156816 #14	ENSGT01020000230338.a.b.b.b	ENSGT00940000156145 #21	ENSGT00940000160947	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00940000164930.a #24	ENSGT00940000155693.a.b #25	ENSGT01030000234625.B.d.c.a #27	ENSGT00390000010925 #28	ENSGT00940000162910 #29	ENSGT00940000162939	ENSGT00940000155747.g.a #31	ENSGT00390000012060 #32	ENSGT00410000025698.b #33	ENSGT00940000153433.A.f #34	ENSGT00940000154790.b.a.b #35	ENSGT00930000151014.q #36	ENSGT00940000159815 #37	ENSGT00940000155454.w.a
Euteleosteomorpha	ANCESTRAL SPECIES	26	ENSGT00940000154427.A	ENSGT00940000156110.c.a	ENSGT00390000006580	ENSGT00940000164710 #7	ENSGT00530000063651.b #8	ENSGT00950000183044.a.a.b	ENSGT00620000087966.a #9	ENSGT00390000009517 #10	ENSGT00390000006223 #11	ENSGT00390000005700 #12	ENSGT00940000156613 #13	ENSGT00940000156816 #14	ENSGT01020000230338.a.b.b.b.d	ENSGT00940000156145 #21	ENSGT00940000160947	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00940000164930.a #24	ENSGT00940000155693.a.b #25	ENSGT01030000234625.B.d.c.a #27	ENSGT00390000010925 #28	ENSGT00940000162910 #29	ENSGT00940000162939	ENSGT00940000155747.g.a #31	ENSGT00390000012060 #32	ENSGT00410000025698.b #33	ENSGT00940000153433.A.f #34	ENSGT00940000154790.b.a.b #35	ENSGT00930000151014.q #36	ENSGT00940000159815 #37	ENSGT00940000155454.w.a
Acanthomorphata	ANCESTRAL SPECIES	7	ENSGT00940000156110.c.a	ENSGT00390000006580	ENSGT00940000164710 #7	ENSGT00530000063651.b #8	ENSGT00950000183044.a.a.b	ENSGT00620000087966.a #9	ENSGT00390000009517 #10	ENSGT00390000006223 #11	ENSGT00390000005700 #12	ENSGT00940000156613 #13	ENSGT00940000156816 #14	ENSGT01030000234575.c.a.a.a.a.b.b #20	ENSGT00940000174567 #16	ENSGT00940000156145 #21	ENSGT00940000160947	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00940000164930.a #24	ENSGT00940000155693.a.b #25	ENSGT01030000234625.B.d.c.a #27	ENSGT01030000234625.B.d.d.b.a #26	ENSGT00390000010925 #28	ENSGT00940000162910 #29	ENSGT00940000162939	ENSGT00940000155747.g.a #31	ENSGT00390000012060 #32	ENSGT00410000025698.b #33	ENSGT00940000153433.A.f #34	ENSGT00940000154790.b.a.b #35	ENSGT00930000151014.q #36	ENSGT00940000159815 #37
Euacanthomorphacea	ANCESTRAL SPECIES	11	ENSGT00390000006580	ENSGT00940000164710 #7	ENSGT00530000063651.b #8	ENSGT00950000183044.a.a.b	ENSGT00620000087966.a #9	ENSGT00390000009517 #10	ENSGT00390000006223 #11	ENSGT00390000005700 #12	ENSGT00940000156613 #13	ENSGT00940000156816 #14	ENSGT01030000234575.c.a.a.a.a.b.b #20	ENSGT00940000174567 #16	ENSGT01030000234575.c.a.a.a.a.b.a.a.b ##20	ENSGT00940000156145 #21	ENSGT00940000160947	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00940000164930.a #24	ENSGT00940000155693.a.b #25	ENSGT01030000234625.B.d.c.a #27	ENSGT01030000234625.B.d.d.b.a #26	ENSGT00390000010925 #28	ENSGT00940000162910 #29	ENSGT00940000162939	ENSGT00940000155747.g.a #31	ENSGT00390000012060 #32	ENSGT00410000025698.b #33	ENSGT00940000153433.A.f #34	ENSGT00940000154790.b.a.b #35	ENSGT00930000151014.q #36	ENSGT00940000159815 #37
Percomorphaceae	ANCESTRAL SPECIES	13	ENSGT00940000156110.c.a	ENSGT00390000006580	ENSGT00940000164710 #7	ENSGT00530000063651.b #8	ENSGT00950000183044.a.a.b	ENSGT00620000087966.a #9	ENSGT00390000009517 #10	ENSGT00390000006223 #11	ENSGT00390000005700 #12	ENSGT00940000156613 #13	ENSGT00940000156816 #14	ENSGT01030000234575.c.a.a.a.a.b.b.a #15	ENSGT00940000174567 #16	ENSGT01030000234575.c.a.a.a.a.b.a.a.b ##20	ENSGT00940000156145 #21	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00940000164930.a #24	ENSGT00940000155693.a.b #25	ENSGT01030000234625.B.d.c.a #27	ENSGT01030000234625.B.d.d.b.a #26	ENSGT00390000010925 #28	ENSGT00940000162910 #29	ENSGT00940000162939	ENSGT00940000155747.g.a #31	ENSGT00390000012060 #32	ENSGT00410000025698.b #33	ENSGT00940000153433.A.f #34	ENSGT00940000154790.b.a.b #35	ENSGT00930000151014.q #36	ENSGT00940000159815 #37
Percomorphaceae_B	ANCESTRAL SPECIES	11	ENSGT00940000164710 #7	ENSGT00530000063651.b #8	ENSGT00950000183044.a.a.b	ENSGT00620000087966.a #9	ENSGT00390000009517 #10	ENSGT00390000006223 #11	ENSGT00390000005700 #12	ENSGT00940000156613 #13	ENSGT00940000156816 #14	ENSGT01030000234575.c.a.a.a.a.b.b.a #15	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.b ##20	ENSGT01030000234575.c.a.a.a.a.b.b.b #20	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.a ##20	ENSGT01030000234575.c.a.a.a.a.b.a.a.b ##20	ENSGT00940000156145 #21	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00940000164930.a #24	ENSGT00940000155693.a.b #25	ENSGT01030000234625.B.d.c.a #27	ENSGT01030000234625.B.d.d.b.a #26	ENSGT00390000010925 #28	ENSGT00940000162910 #29	ENSGT00940000162939	ENSGT00940000155747.g.a #31	ENSGT00390000012060 #32	ENSGT00410000025698.b #33	ENSGT00940000153433.A.f #34	ENSGT00940000154790.b.a.b #35	ENSGT00930000151014.q #36	ENSGT00940000159815 #37
Ovalentaria	ANCESTRAL SPECIES	10	ENSGT00940000164710 #7	ENSGT00530000063651.b #8	ENSGT00950000183044.a.a.b	ENSGT00620000087966.a #9	ENSGT00390000009517 #10	ENSGT00390000006223 #11	ENSGT00390000005700 #12	ENSGT00940000156613 #13	ENSGT00940000156816 #14	ENSGT01030000234575.c.a.a.a.a.b.b.a #15	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.b ##20	ENSGT01030000234575.c.a.a.a.a.b.b.b #20	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.a ##20	ENSGT01030000234575.c.a.a.a.a.b.a.a.b ##20	ENSGT00940000156145 #21	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00940000164930.a #24	ENSGT00940000155693.a.b #25	ENSGT01030000234625.B.d.c.a #27	ENSGT01030000234625.B.d.d.b.a #26	ENSGT00390000010925 #28	ENSGT00940000162910 #29	ENSGT00940000162939	ENSGT00940000155747.g.a #31	ENSGT00390000012060 #32	ENSGT00410000025698.b #33	ENSGT00940000153433.A.f #34	ENSGT00940000154790.b.a.b #35	ENSGT00930000151014.q #36	ENSGT00940000159815 #37
Ovalentaria_B	ANCESTRAL SPECIES	18	ENSGT00940000164710 #7	ENSGT00530000063651.b #8	ENSGT00950000183044.a.a.b	ENSGT00620000087966.a #9	ENSGT00390000009517 #10	ENSGT00390000006223 #11	ENSGT00390000005700 #12	ENSGT00940000156613 #13	ENSGT00940000156816 #14	ENSGT01030000234575.c.a.a.a.a.b.b.a #15	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.b ##20	ENSGT01030000234575.c.a.a.a.a.b.b.b #20	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.a ##20	ENSGT01030000234575.c.a.a.a.a.b.a.a.b ##20	ENSGT00940000156145 #21	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00940000164930.a #24	ENSGT00940000155693.a.b #25	ENSGT01030000234625.B.d.c.a #27	ENSGT01030000234625.B.d.d.b.a #26	ENSGT00390000010925 #28	ENSGT00940000162910 #29	ENSGT00940000162939	ENSGT00940000155747.g.a #31	ENSGT00390000012060 #32	ENSGT00410000025698.b #33	ENSGT00940000153433.A.f #34	ENSGT00940000154790.b.a.b #35	ENSGT00930000151014.q #36	ENSGT00940000159815 #37
Cichlidae	ANCESTRAL SPECIES	22	ENSGT00390000006580	ENSGT00940000164710 #7	ENSGT00530000063651.b #8	ENSGT00950000183044.a.a.b	ENSGT00620000087966.a #9	ENSGT00390000009517 #10	ENSGT00390000006223 #11	ENSGT00390000005700 #12	ENSGT00940000156613.h #13	ENSGT00940000156816 #14	ENSGT01030000234575.c.a.a.a.a.b.b.a #15	ENSGT00940000174567 #16	ENSGT01030000234575.c.a.a.a.a.b.b.b #20	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.a ##20	ENSGT00940000156145 #21	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00940000164930.a #24	ENSGT00940000155693.a.b #25	ENSGT01030000234625.B.d.c.a #27	ENSGT01030000234625.B.d.d.b.a #26	ENSGT00390000010925 #28	ENSGT00940000162910 #29	ENSGT00940000177781 #30	ENSGT00940000155747.g.a #31	ENSGT00390000012060 #32	ENSGT00410000025698.b #33	ENSGT00940000153433.A.f #34	ENSGT00940000154790.b.a.b #35	ENSGT00930000151014.q #36	ENSGT00940000159815 #37
Midas cichlid	MODERN SPECIES	150	zgc:163014 (ENSACIG00000007365) #7	tmed8 (ENSACIG00000007383) #8	ATG2B (ENSACIG00000007406) #9	gskip (ENSACIG00000007520) #10	npc2.1 (ENSACIG00000007526) #11	isca2 (ENSACIG00000007660) #12	EML5 (ENSACIG00000007683) #13	ttc8 (ENSACIG00000007783) #14	ENSACIG00000007814 #15	ENSACIG00000007829 #16	ENSACIG00000007841 #17	ENSACIG00000007862 #18	ENSACIG00000007883 #19	ENSACIG00000007938 #20	NEK9 (ENSACIG00000007963) #21	ENSACIG00000008009 #22	ENSACIG00000008029 #23	ENSACIG00000008052 #24	JDP2 (ENSACIG00000008079) #25	ENSACIG00000008112 #26	FLVCR2 (ENSACIG00000008129) #27	ERG28 (ENSACIG00000008170) #28	ENSACIG00000008186 #29	ENSACIG00000008200 #30	tgfb3 (ENSACIG00000008212) #31	IFT43 (ENSACIG00000008236) #32	GPATCH2L (ENSACIG00000008257) #33	ESRRB (ENSACIG00000008268) #34	prox2 (ENSACIG00000008285) #35	dlst (ENSACIG00000008305) #36	RPS6KL1 (ENSACIG00000008333) #37
Pseudocrenilabrinae	ANCESTRAL SPECIES	8	ENSGT00390000009517 #10	ENSGT00390000006223 #11	ENSGT00390000005700 #12	ENSGT00940000156613.h #13	ENSGT00940000156816 #14	ENSGT01030000234575.c.a.a.a.a.b.b.a #15	ENSGT00940000174567 #16	ENSGT00990000208419.a	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.a.c.a ##20	ENSGT01030000234575.c.a.a.a.a.b.b.b.d.b #20	ENSGT01030000234575.c.a.a.a.a.b.b.b.d.a #20	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.a.d ##20	ENSGT01030000234575.c.a.a.a.a.b.b.b.c.b #20	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.a.c.b ##20	ENSGT00940000156145 #21	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00940000164930.a #24	ENSGT00940000155693.a.b #25	ENSGT01030000234625.B.d.c.a #27	ENSGT01030000234625.B.d.d.b.a #26	ENSGT00390000010925 #28	ENSGT00940000162910 #29	ENSGT00940000177781 #30	ENSGT00940000155747.g.a #31	ENSGT00390000012060 #32	ENSGT00410000025698.b #33	ENSGT00940000153433.A.f #34	ENSGT00940000154790.b.a.b #35	ENSGT00930000151014.q #36	ENSGT00940000159815 #37
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	6	ENSGT00620000087966.a #9	ENSGT00390000009517 #10	ENSGT00390000006223 #11	ENSGT00390000005700 #12	ENSGT00940000156613.h #13	ENSGT00940000156816 #14	ENSGT01030000234575.c.a.a.a.a.b.b.a #15	ENSGT00940000174567 #16	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.a.c.a ##20	ENSGT01030000234575.c.a.a.a.a.b.b.b.d.b #20	ENSGT01030000234575.c.a.a.a.a.b.b.b.d.a #20	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.a.d ##20	ENSGT01030000234575.c.a.a.a.a.b.b.b.c.b #20	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.a.c.b ##20	ENSGT00940000156145 #21	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00940000164930.a #24	ENSGT00940000155693.a.b #25	ENSGT01030000234625.B.d.c.a #27	ENSGT01030000234625.B.d.d.b.a #26	ENSGT00390000010925 #28	ENSGT00940000162910 #29	ENSGT00940000177781 #30	ENSGT00940000155747.g.a #31	ENSGT00390000012060 #32	ENSGT00410000025698.b #33	ENSGT00940000153433.A.f #34	ENSGT00940000154790.b.a.b #35	ENSGT00930000151014.q #36	ENSGT00940000159815 #37
Haplochromini	ANCESTRAL SPECIES	7	ENSGT00950000183044.a.a.b	ENSGT00620000087966.a #9	ENSGT00390000009517 #10	ENSGT00390000006223 #11	ENSGT00390000005700 #12	ENSGT00940000156613.h #13	ENSGT00940000156816 #14	ENSGT01030000234575.c.a.a.a.a.b.b.a #15	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.b ##20	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.a.c.a ##20	ENSGT01030000234575.c.a.a.a.a.b.b.b.d.b #20	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.a.d ##20	ENSGT01030000234575.c.a.a.a.a.b.b.b.c.b #20	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.a.c.b ##20	ENSGT00940000156145 #21	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00940000164930.a #24	ENSGT00940000155693.a.b #25	ENSGT01030000234625.B.d.c.a #27	ENSGT01030000234625.B.d.d.b.a #26	ENSGT00390000010925 #28	ENSGT00940000162910 #29	ENSGT00940000177781 #30	ENSGT00940000155747.g.a #31	ENSGT00390000012060 #32	ENSGT00410000025698.b #33	ENSGT00940000153433.A.f #34	ENSGT00940000154790.b.a.b #35	ENSGT00930000151014.q #36	ENSGT00940000159815 #37
Burton s mouthbrooder	MODERN SPECIES	285	tmed8 (ENSHBUG00000019613) #8	NOXRED1 (ENSHBUG00000019593)	ATG2B (ENSHBUG00000019549) #9	gskip (ENSHBUG00000019220) #10	npc2.1 (ENSHBUG00000019206) #11	isca2 (ENSHBUG00000019196) #12	EML5 (ENSHBUG00000019180) #13	ttc8 (ENSHBUG00000019056) #14	ENSHBUG00000018964 #15	ENSHBUG00000018947 ##20	ENSHBUG00000018926 ##20	ENSHBUG00000018906 #20	ENSHBUG00000018894 #20	ENSHBUG00000018865 ##20	NEK9 (ENSHBUG00000018851) #21	ENSHBUG00000018771 #22	MLH3 (ENSHBUG00000018766) #23	ENSHBUG00000018749 #24	JDP2 (ENSHBUG00000018738) #25	FLVCR2 (ENSHBUG00000018722) #26	ERG28 (ENSHBUG00000018687) #28	ENSHBUG00000018667 #29	tgfb3 (ENSHBUG00000018621) #31	IFT43 (ENSHBUG00000018591) #32	GPATCH2L (ENSHBUG00000018530) #33	ESRRB (ENSHBUG00000018505) #34	prox2 (ENSHBUG00000018457) #35	dlst (ENSHBUG00000018444) #36	RPS6KL1 (ENSHBUG00000018411) #37	ENSHBUG00000000936	LRRC74A (ENSHBUG00000018359)
Haplochromini_A	ANCESTRAL SPECIES	7	ENSGT00620000087966.a #9	ENSGT00390000009517 #10	ENSGT00390000006223 #11	ENSGT00390000005700 #12	ENSGT00940000156613.h #13	ENSGT00940000156816 #14	ENSGT01030000234575.c.a.a.a.a.b.b.a #15	ENSGT00940000174567 #16	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.b ##20	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.a.c.a ##20	ENSGT01030000234575.c.a.a.a.a.b.b.b.d.b #20	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.a.d ##20	ENSGT01030000234575.c.a.a.a.a.b.b.b.c.b #20	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.a.c.b ##20	ENSGT00940000156145 #21	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00940000164930.a #24	ENSGT00940000155693.a.b #25	ENSGT01030000234625.B.d.c.a #27	ENSGT00390000010925 #28	ENSGT00940000162910 #29	ENSGT00940000177781 #30	ENSGT00940000155747.g.a #31	ENSGT00390000012060 #32	ENSGT00410000025698.b #33	ENSGT00940000153433.A.f #34	ENSGT00940000154790.b.a.b #35	ENSGT00930000151014.q #36	ENSGT00940000159815 #37	ENSGT00940000155454.w.a.a
Haplochromini_B	ANCESTRAL SPECIES	13	ENSGT00940000175915	ENSGT00620000087966.a #9	ENSGT00390000009517 #10	ENSGT00390000006223 #11	ENSGT00390000005700 #12	ENSGT00940000156613.h #13	ENSGT00940000156816 #14	ENSGT01030000234575.c.a.a.a.a.b.b.a #15	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.b ##20	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.a.c.a ##20	ENSGT01030000234575.c.a.a.a.a.b.b.b.d.b #20	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.a.d ##20	ENSGT01030000234575.c.a.a.a.a.b.b.b.c.b #20	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.a.c.b ##20	ENSGT00940000156145 #21	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00940000164930.a #24	ENSGT00940000155693.a.b #25	ENSGT01030000234625.B.d.c.a #27	ENSGT00390000010925 #28	ENSGT00940000162910 #29	ENSGT00940000177781 #30	ENSGT00940000155747.g.a #31	ENSGT00390000012060 #32	ENSGT00410000025698.b #33	ENSGT00940000153433.A.f #34	ENSGT00940000154790.b.a.b #35	ENSGT00930000151014.q #36	ENSGT00940000159815 #37	ENSGT00940000155454.w.a.a
Eastern happy	MODERN SPECIES	10	tmed8 (ENSACLG00000023624) #8	ATG2B (ENSACLG00000023637) #9	gskip (ENSACLG00000023830) #10	npc2.1 (ENSACLG00000023844) #11	isca2 (ENSACLG00000023953) #12	EML5 (ENSACLG00000023969) #13	ttc8 (ENSACLG00000024073) #14	ENSACLG00000024117 #15	ENSACLG00000024128 ##20	ENSACLG00000024140 ##20	ENSACLG00000024144 #20	ENSACLG00000024146 ##20	ENSACLG00000024153 #20	ENSACLG00000024344 ##20	NEK9 (ENSACLG00000024366) #21	ENSACLG00000024424 #22	MLH3 (ENSACLG00000024432) #23	ENSACLG00000024472 #24	JDP2 (ENSACLG00000024478) #25	FLVCR2 (ENSACLG00000024486) #27	ERG28 (ENSACLG00000024499) #28	ENSACLG00000024531 #29	ENSACLG00000024537 #29	tgfb3 (ENSACLG00000024559) #31	IFT43 (ENSACLG00000024588) #32	GPATCH2L (ENSACLG00000024682) #33	ESRRB (ENSACLG00000024711) #34	prox2 (ENSACLG00000024761) #35	dlst (ENSACLG00000024780) #36	RPS6KL1 (ENSACLG00000024821) #37	ENSACLG00000024844
Zebra mbuna	MODERN SPECIES	11	tmed8 (ENSMZEG00005020739) #8	ENSMZEG00005020743	ATG2B (ENSMZEG00005020754) #9	gskip (ENSMZEG00005020767) #10	npc2.1 (ENSMZEG00005020770) #11	isca2 (ENSMZEG00005020772) #12	EML5 (ENSMZEG00005020778) #13	ttc8 (ENSMZEG00005020788) #14	ENSMZEG00005020797 #15	ENSMZEG00005020800 ##20	ENSMZEG00005020803 ##20	ENSMZEG00005020806 #20	ENSMZEG00005020810 #20	ENSMZEG00005020813 ##20	NEK9 (ENSMZEG00005020817) #21	ENSMZEG00005020826 #22	MLH3 (ENSMZEG00005020828) #23	ENSMZEG00005020833 #24	JDP2 (ENSMZEG00005020836) #25	FLVCR2 (ENSMZEG00005020841) #27	ENSMZEG00005020846	ERG28 (ENSMZEG00005020851) #28	ENSMZEG00005020854 #29	ENSMZEG00005020858 #30	tgfb3 (ENSMZEG00005020864) #31	IFT43 (ENSMZEG00005020870) #32	GPATCH2L (ENSMZEG00005020876) #33	ESRRB (ENSMZEG00005020880) #34	prox2 (ENSMZEG00005020890) #35	dlst (ENSMZEG00005020939) #36	RPS6KL1 (ENSMZEG00005020941) #37
P. nyererei	MODERN SPECIES	418													ENSPNYG00000021367 #20	ENSPNYG00000021385 ##20	NEK9 (ENSPNYG00000021405) #21	ENSPNYG00000021426 #22	ENSPNYG00000021432 #23	ENSPNYG00000021445 #23	ENSPNYG00000021461 #24	JDP2 (ENSPNYG00000021474) #25	FLVCR2 (ENSPNYG00000021487) #26	ERG28 (ENSPNYG00000021518) #28	ENSPNYG00000021526 #29	ENSPNYG00000021536 #30	tgfb3 (ENSPNYG00000021547) #31	IFT43 (ENSPNYG00000021561) #32	GPATCH2L (ENSPNYG00000021578) #33	ESRRB (ENSPNYG00000021595) #34	prox2 (ENSPNYG00000021606) #35	dlst (ENSPNYG00000021627) #36	RPS6KL1 (ENSPNYG00000021655) #37
Lyretail cichlid	MODERN SPECIES	299	gskip (ENSNBRG00000004640) #10	npc2.1 (ENSNBRG00000004628) #11	isca2 (ENSNBRG00000004609) #12	EML5 (ENSNBRG00000004484) #13	ttc8 (ENSNBRG00000004443) #14	ENSNBRG00000004432 #15	ENSNBRG00000004420 ##20	ENSNBRG00000004402	ENSNBRG00000004394	ENSNBRG00000004378 #20	ENSNBRG00000004355 #20	ENSNBRG00000004315 ##20	ENSNBRG00000004293	ENSNBRG00000004273 ##20	NEK9 (ENSNBRG00000004206) #21	ENSNBRG00000004194 #22	ENSNBRG00000004184	MLH3 (ENSNBRG00000004159) #23	ENSNBRG00000004137 #24	JDP2 (ENSNBRG00000004110) #25	ENSNBRG00000004097 #27	FLVCR2 (ENSNBRG00000004058) #26	ERG28 (ENSNBRG00000004037) #28	ENSNBRG00000004022 #29	ENSNBRG00000004002 #29	ENSNBRG00000003977 #30	tgfb3 (ENSNBRG00000003946) #31	IFT43 (ENSNBRG00000003925) #32	GPATCH2L (ENSNBRG00000003911) #33	ESRRB (ENSNBRG00000003887) #34	prox2 (ENSNBRG00000003860) #35
Nile tilapia	MODERN SPECIES	10	EML5 (ENSONIG00000020175) #13	ttc8 (ENSONIG00000020176) #14	ENSONIG00000020177 ##20	ENSONIG00000040387 #20	ENSONIG00000028507 ##20	ENSONIG00000043196	ENSONIG00000020181 ##20	ENSONIG00000020179 #20	ENSONIG00000020180 #20	ENSONIG00000040533 #20	ENSONIG00000034205 ##20	ENSONIG00000035684 #20	ENSONIG00000034187 ##20	ENSONIG00000033262	NEK9 (ENSONIG00000020182) #21	ENSONIG00000020183 #22	MLH3 (ENSONIG00000020184) #23	ENSONIG00000020185 #24	JDP2 (ENSONIG00000020186) #25	FLVCR2 (ENSONIG00000020187) #26	ERG28 (ENSONIG00000020188) #28	ENSONIG00000020189 #29	tgfb3 (ENSONIG00000020190) #31	IFT43 (ENSONIG00000037253) #32	GPATCH2L (ENSONIG00000020191) #33	ESRRB (ENSONIG00000020192) #34	prox2 (ENSONIG00000020193) #35	dlst (ENSONIG00000020194) #36	RPS6KL1 (ENSONIG00000020195) #37	ENSONIG00000020196	ENSONIG00000020197
Pomacentridae	ANCESTRAL SPECIES	19	ENSGT00940000164710 #7	ENSGT00530000063651.b #8	ENSGT00950000183044.a.a.b	ENSGT00620000087966.a #9	ENSGT00390000009517 #10	ENSGT00390000006223 #11	ENSGT00390000005700 #12	ENSGT00940000156613 #13	ENSGT00940000156816 #14	ENSGT01030000234575.c.a.a.a.a.b.b.a #15	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.b ##20	ENSGT01030000234575.c.a.a.a.a.b.b.b #20	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.a ##20	ENSGT01030000234575.c.a.a.a.a.b.a.a.b ##20	ENSGT00940000156145 #21	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00940000164930.a #24	ENSGT00940000155693.a.b #25	ENSGT01030000234625.B.d.d.b.a #26	ENSGT00390000010925 #28	ENSGT00940000162910 #29	ENSGT00940000162939	ENSGT00940000155747.g.a.h #31	ENSGT00390000012060 #32	ENSGT00410000025698.b #33	ENSGT00940000153433.A.f #34	ENSGT00940000154790.b.a.b #35	ENSGT00930000151014.q #36	ENSGT00940000159815 #37	ENSGT00940000155454.w.a.a
Pomacentridae_A	ANCESTRAL SPECIES	19	ENSGT00940000164710 #7	ENSGT00530000063651.b #8	ENSGT00950000183044.a.a.b	ENSGT00620000087966.a #9	ENSGT00390000009517 #10	ENSGT00390000006223 #11	ENSGT00390000005700 #12	ENSGT00940000156613 #13	ENSGT00940000156816 #14	ENSGT01030000234575.c.a.a.a.a.b.b.a #15	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.b ##20	ENSGT01030000234575.c.a.a.a.a.b.b.b #20	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.a ##20	ENSGT01030000234575.c.a.a.a.a.b.a.a.b ##20	ENSGT00940000156145 #21	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00940000164930.a #24	ENSGT00940000155693.a.b #25	ENSGT01030000234625.B.d.d.b.a #26	ENSGT00390000010925 #28	ENSGT00940000162910 #29	ENSGT00940000162939	ENSGT00940000155747.g.a.h #31	ENSGT00390000012060 #32	ENSGT00410000025698.b #33	ENSGT00940000153433.A.f #34	ENSGT00940000154790.b.a.b #35	ENSGT00930000151014.q #36	ENSGT00940000159815 #37	ENSGT00940000155454.w.a.a
Amphiprion	ANCESTRAL SPECIES	12	ENSGT00940000164710 #7	ENSGT00530000063651.b #8	ENSGT00950000183044.a.a.b	ENSGT00620000087966.a #9	ENSGT00390000009517 #10	ENSGT00390000006223 #11	ENSGT00390000005700 #12	ENSGT00940000156613 #13	ENSGT00940000156816 #14	ENSGT01030000234575.c.a.a.a.a.b.b.a #15	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.b ##20	ENSGT01030000234575.c.a.a.a.a.b.b.b #20	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.a ##20	ENSGT01030000234575.c.a.a.a.a.b.a.a.b ##20	ENSGT00940000156145 #21	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00940000164930.a #24	ENSGT00940000155693.a.b #25	ENSGT01030000234625.B.d.d.b.a #26	ENSGT00390000010925 #28	ENSGT00940000162910 #29	ENSGT00940000162939	ENSGT00940000155747.g.a.h #31
Clown anemonefish	MODERN SPECIES	1431															NEK9 (ENSAOCG00000013138) #21	ENSAOCG00000013146 #22	ENSAOCG00000013184 #23	ENSAOCG00000013202 #24	JDP2 (ENSAOCG00000013212) #25	FLVCR2 (ENSAOCG00000013231) #26	ERG28 (ENSAOCG00000013249) #28	ENSAOCG00000013283
Orange clownfish	MODERN SPECIES	9	gstz1 (ENSAPEG00000024491)	zgc:163014 (ENSAPEG00000024503) #7	tmed8 (ENSAPEG00000000322) #8	NOXRED1 (ENSAPEG00000000345)	ATG2B (ENSAPEG00000000393) #9	gskip (ENSAPEG00000000534) #10	npc2.1 (ENSAPEG00000000554) #11	isca2 (ENSAPEG00000000560) #12	EML5 (ENSAPEG00000000586) #13	ttc8 (ENSAPEG00000000736) #14	ENSAPEG00000000801 #15	ENSAPEG00000000832 ##20	ENSAPEG00000000890 #20	ENSAPEG00000000904 ##20	NEK9 (ENSAPEG00000000928) #21	ENSAPEG00000000944 #22	ENSAPEG00000000961 #23	ENSAPEG00000001019 #24	JDP2 (ENSAPEG00000001021) #25	FLVCR2 (ENSAPEG00000001034) #26	ERG28 (ENSAPEG00000001045) #28	ENSAPEG00000001073 #29	ENSAPEG00000001097	tgfb3 (ENSAPEG00000001156) #31	snx6 (ENSAPEG00000001199)	psma3 (ENSAPEG00000001270)	ENSAPEG00000001329	ENSAPEG00000001342	irf2bpl (ENSAPEG00000001359)	dact1 (ENSAPEG00000001412)	lgals3b (ENSAPEG00000001426)
Spiny chromis	MODERN SPECIES	154	gstz1 (ENSAPOG00000002595)	tmed8 (ENSAPOG00000000828) #8	NOXRED1 (ENSAPOG00000002643)	ATG2B (ENSAPOG00000002779) #9	gskip (ENSAPOG00000002810) #10	npc2.1 (ENSAPOG00000000060) #11	isca2 (ENSAPOG00000002937) #12	EML5 (ENSAPOG00000003064) #13	ttc8 (ENSAPOG00000003112) #14	ENSAPOG00000003121 #15	ENSAPOG00000000929 ##20	ENSAPOG00000003145 #20	ENSAPOG00000003161 ##20	ENSAPOG00000003174 ##20	NEK9 (ENSAPOG00000003199) #21	ENSAPOG00000003214 #22	ENSAPOG00000003226 #23	ENSAPOG00000003235 #24	JDP2 (ENSAPOG00000003248) #25	FLVCR2 (ENSAPOG00000003292) #26	ERG28 (ENSAPOG00000003330) #28	ENSAPOG00000003392 #29	tgfb3 (ENSAPOG00000003404) #31	IFT43 (ENSAPOG00000003418) #32	GPATCH2L (ENSAPOG00000003442) #33
Bicolor damselfish	MODERN SPECIES	244	zgc:163014 (ENSSPAG00000009950) #7	tmed8 (ENSSPAG00000009938) #8	NOXRED1 (ENSSPAG00000009929)	ATG2B (ENSSPAG00000009869) #9	gskip (ENSSPAG00000009855) #10	npc2.1 (ENSSPAG00000009838) #11	isca2 (ENSSPAG00000009824) #12	EML5 (ENSSPAG00000009735) #13	ttc8 (ENSSPAG00000009650) #14	ENSSPAG00000009635 #15	ENSSPAG00000009616 ##20	ENSSPAG00000009603 #20	ENSSPAG00000009596 ##20	ENSSPAG00000009588 ##20	NEK9 (ENSSPAG00000009560) #21	ENSSPAG00000009542 #22	MLH3 (ENSSPAG00000009525) #23	ENSSPAG00000009516 #24	ENSSPAG00000009505 ##25	FLVCR2 (ENSSPAG00000009467) #26	ERG28 (ENSSPAG00000009448) #28	ENSSPAG00000009438 #29	ENSSPAG00000009413	tgfb3 (ENSSPAG00000009377) #31	IFT43 (ENSSPAG00000009354) #32	GPATCH2L (ENSSPAG00000009339) #33	ESRRB (ENSSPAG00000009297) #34	prox2 (ENSSPAG00000009278) #35	dlst (ENSSPAG00000009222) #36	RPS6KL1 (ENSSPAG00000009189) #37	ENSSPAG00000009174
Atherinomorphae	ANCESTRAL SPECIES	11	ENSGT00940000164710 #7	ENSGT00530000063651.b #8	ENSGT00950000183044.a.a.b	ENSGT00620000087966.a #9	ENSGT00390000009517 #10	ENSGT00390000006223 #11	ENSGT00390000005700 #12	ENSGT00940000156613 #13	ENSGT00940000156816 #14	ENSGT01030000234575.c.a.a.a.a.b.b.a #15	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.b ##20	ENSGT01030000234575.c.a.a.a.a.b.b.b #20	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.a ##20	ENSGT01030000234575.c.a.a.a.a.b.a.a.b ##20	ENSGT00940000156145 #21	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00940000164930.a #24	ENSGT00940000155693.a.b #25	ENSGT01030000234625.B.d.c.a #27	ENSGT00390000010925 #28	ENSGT00940000162910 #29	ENSGT00940000162939	ENSGT00940000155747.g.a #31	ENSGT00390000012060 #32	ENSGT00410000025698.b #33	ENSGT00940000153433.A.f #34	ENSGT00940000154790.b.a.b #35	ENSGT00930000151014.q #36	ENSGT00940000159815 #37	ENSGT00940000155454.w.a.b
Oryzias	ANCESTRAL SPECIES	3	ENSGT00940000164710 #7	ENSGT00530000063651.b #8	ENSGT00950000183044.a.a.b	ENSGT00620000087966.a #9	ENSGT00390000009517 #10	ENSGT00390000006223 #11	ENSGT00390000005700 #12	ENSGT00940000156613 #13	ENSGT00940000156816 #14	ENSGT01030000234575.c.a.a.a.a.b.b.a #15	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.b ##20	ENSGT01030000234575.c.a.a.a.a.b.b.b #20	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.a.b ##20	ENSGT01030000234575.c.a.a.a.a.b.a.a.b ##20	ENSGT00940000156145 #21	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00940000164930.a #24	ENSGT00940000155693.a.b #25	ENSGT01030000234625.B.d.c.a #27	ENSGT00390000010925 #28	ENSGT00940000162910 #29	ENSGT00940000162939	ENSGT00940000155747.g.a #31	ENSGT00390000012060 #32	ENSGT00410000025698.b #33	ENSGT00940000153433.A.f #34	ENSGT00940000154790.b.a.b #35	ENSGT00930000151014.q #36	ENSGT00940000159815 #37	ENSGT00940000154297.A.g.a
Oryzias_a	ANCESTRAL SPECIES	11	ENSGT00940000164710 #7	ENSGT00530000063651.b #8	ENSGT00620000087966.a #9	ENSGT00390000009517 #10	ENSGT00390000006223 #11	ENSGT00390000005700 #12	ENSGT00940000156613 #13	ENSGT00940000156816 #14	ENSGT01030000234575.c.a.a.a.a.b.b.a #15	ENSGT00940000174567 #16	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.b ##20	ENSGT01030000234575.c.a.a.a.a.b.b.b #20	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.a.b ##20	ENSGT01030000234575.c.a.a.a.a.b.a.a.b ##20	ENSGT00940000156145 #21	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00940000164930.a #24	ENSGT00940000155693.a.b #25	ENSGT01030000234625.B.d.c.a #27	ENSGT00390000010925 #28	ENSGT00940000162910 #29	ENSGT00940000155747.g.a #31	ENSGT00390000012060 #32	ENSGT00410000025698.b #33	ENSGT00940000153433.A.f #34	ENSGT00940000154790.b.a.b #35	ENSGT00930000151014.q #36	ENSGT00940000159815 #37	ENSGT00940000154297.A.g.a	ENSGT00940000159057
Japanese Medaka HdrR	MODERN SPECIES	14	zgc:163014 (ENSORLG00000016320) #7	tmed8 (ENSORLG00000016326) #8	ATG2B (ENSORLG00000016349) #9	npc2.1 (ENSORLG00000022170) #11	gskip (ENSORLG00000016354) #10	isca2 (ENSORLG00000016363) #12	EML5 (ENSORLG00000016408) #13	ENSORLG00000016451 #15	ttc8 (ENSORLG00000016437) #14	ENSORLG00000016456 ##20	ENSORLG00000028807 #20	ENSORLG00000025036 ##20	ENSORLG00000026672 ##20	ENSORLG00000029477 ##20	NEK9 (ENSORLG00000016466) #21	ENSORLG00000028769 #22	ENSORLG00000016499 #23	ENSORLG00000016509 #24	JDP2 (ENSORLG00000029498) #25	FLVCR2 (ENSORLG00000016522) #27	ERG28 (ENSORLG00000016527) #28	ENSORLG00000024651 #29	tgfb3 (ENSORLG00000016565) #31	IFT43 (ENSORLG00000016572) #32	GPATCH2L (ENSORLG00000022664) #33	esrrb (ENSORLG00000016581) #34	prox2 (ENSORLG00000016587) #35	dlst (ENSORLG00000016623) #36	RPS6KL1 (ENSORLG00000016629) #37	LRRC74A (ENSORLG00000016633)	ENSORLG00000016639
Chinese medaka	MODERN SPECIES	2368																ENSOSIG00000012951 #22
Oryzias_b	ANCESTRAL SPECIES	12	ENSGT00530000063651.b #8	ENSGT00950000183044.a.a.b	ENSGT00620000087966.a #9	ENSGT00390000009517 #10	ENSGT00390000006223 #11	ENSGT00390000005700 #12	ENSGT00940000156613 #13	ENSGT00940000156816 #14	ENSGT01030000234575.c.a.a.a.a.b.b.a #15	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.b ##20	ENSGT01030000234575.c.a.a.a.a.b.b.b #20	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.a.a.a ##20	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.a.a.b ##20	ENSGT01030000234575.c.a.a.a.a.b.a.a.b ##20	ENSGT00940000156145 #21	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00940000164930.a #24	ENSGT00940000155693.a.b #25	ENSGT01030000234625.B.d.c.a #27	ENSGT00390000010925 #28	ENSGT00940000162910 #29	ENSGT00940000162939	ENSGT00940000155747.g.a #31	ENSGT00390000012060 #32	ENSGT00410000025698.b #33	ENSGT00940000153433.A.f #34	ENSGT00940000154790.b.a.b #35	ENSGT00930000151014.q #36	ENSGT00940000159815 #37	ENSGT00940000154297.A.g.a
Indian medaka	MODERN SPECIES		ENSOMEG00000021655 #9	ENSOMEG00000021632	ENSOMEG00000021616 #9	npc2.1 (ENSOMEG00000021603) #11	gskip (ENSOMEG00000021589) #10	isca2 (ENSOMEG00000021582) #12	EML5 (ENSOMEG00000021512) #13	ttc8 (ENSOMEG00000021289) #14	ENSOMEG00000021398 #15	ENSOMEG00000021211 ##20	ENSOMEG00000021194 #20	ENSOMEG00000021178 ##20	ENSOMEG00000021163 ##20	ENSOMEG00000021145 ##20	NEK9 (ENSOMEG00000021129) #21	ENSOMEG00000021096 #22	ENSOMEG00000021076 #23	ENSOMEG00000020995 #24	JDP2 (ENSOMEG00000020954) #25	FLVCR2 (ENSOMEG00000020912) #27	ERG28 (ENSOMEG00000020883) #28	ENSOMEG00000020849 #29	ENSOMEG00000020840	tgfb3 (ENSOMEG00000020809) #31	IFT43 (ENSOMEG00000020751) #32	GPATCH2L (ENSOMEG00000020697) #33	ESRRB (ENSOMEG00000020638) #34	prox2 (ENSOMEG00000020556) #35	dlst (ENSOMEG00000020530) #36	RPS6KL1 (ENSOMEG00000020459) #37	ANGEL1 (ENSOMEG00000020430)
Javanese ricefish	MODERN SPECIES	14	tmed8 (ENSOJAG00000005525) #8	NOXRED1 (ENSOJAG00000005479)	ATG2B (ENSOJAG00000005376) #9	gskip (ENSOJAG00000005347) #10	npc2.1 (ENSOJAG00000005342) #11	isca2 (ENSOJAG00000005334) #12	EML5 (ENSOJAG00000005258) #13	ttc8 (ENSOJAG00000005178) #14	ENSOJAG00000005164 #15	ENSOJAG00000005156 ##20	ENSOJAG00000005144	ENSOJAG00000005100 ##20	ENSOJAG00000005078 ##20	ENSOJAG00000005066 ##20	NEK9 (ENSOJAG00000004956) #21	ENSOJAG00000004937 #22	ENSOJAG00000004920 #23	ENSOJAG00000004732 #24	JDP2 (ENSOJAG00000004690) #25	FLVCR2 (ENSOJAG00000004190) #27	ERG28 (ENSOJAG00000004081) #28	ENSOJAG00000003950 #29	tgfb3 (ENSOJAG00000003928) #31	IFT43 (ENSOJAG00000003918) #32	GPATCH2L (ENSOJAG00000003875) #33	ESRRB (ENSOJAG00000003699) #34	prox2 (ENSOJAG00000003608) #35	dlst (ENSOJAG00000003574) #36	RPS6KL1 (ENSOJAG00000022916) #37	LRRC74A (ENSOJAG00000022909)	ANGEL1 (ENSOJAG00000022907)
Cyprinodontiformes	ANCESTRAL SPECIES	23	ENSGT00390000006580	ENSGT00940000164710 #7	ENSGT00530000063651.b #8	ENSGT00950000183044.a.a.b	ENSGT00620000087966.a #9	ENSGT00390000009517 #10	ENSGT00390000006223 #11	ENSGT00390000005700 #12	ENSGT00940000156613 #13	ENSGT00940000156816 #14	ENSGT01030000234575.c.a.a.a.a.b.b.a #15	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.b ##20	ENSGT01030000234575.c.a.a.a.a.b.b.b #20	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.a ##20	ENSGT00940000156145 #21	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00940000164930.a #24	ENSGT00940000155693.a.b #25	ENSGT01030000234625.B.d.c.a #27	ENSGT00390000010925 #28	ENSGT00940000162910 #29	ENSGT00940000177781 #30	ENSGT00940000155747.g.a #31	ENSGT00390000012060 #32	ENSGT00410000025698.b #33	ENSGT00940000153433.A.f #34	ENSGT00940000154790.b.a.b #35	ENSGT00930000151014.q #36	ENSGT00940000159815 #37	ENSGT00940000155454.w.a.b
Aplocheiloidei	ANCESTRAL SPECIES	15	ENSGT00390000006580	ENSGT00940000164710 #7	ENSGT00530000063651.b #8	ENSGT00950000183044.a.a.b	ENSGT00620000087966.a #9	ENSGT00390000009517 #10	ENSGT00390000006223 #11	ENSGT00390000005700 #12	ENSGT00940000156613 #13	ENSGT00940000156816 #14	ENSGT01030000234575.c.a.a.a.a.b.b.a #15	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.b ##20	ENSGT01030000234575.c.a.a.a.a.b.b.b #20	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.a ##20	ENSGT00940000156145 #21	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00940000164930.a #24	ENSGT00940000155693.a.b #25	ENSGT01030000234625.B.d.c.a #27	ENSGT00390000010925 #28	ENSGT00940000162910 #29	ENSGT00940000155747.g.a #31	ENSGT00390000012060 #32	ENSGT00410000025698.b #33	ENSGT00940000153433.A.f #34	ENSGT00940000154790.b.a.b #35	ENSGT00930000151014.q #36	ENSGT00940000159815 #37	ENSGT00940000155454.w.a.b	ENSGT00940000155454.w.a.a
Mangrove rivulus	MODERN SPECIES	1	zgc:163014 (ENSKMAG00000003393) #7	tmed8 (ENSKMAG00000003386) #8	NOXRED1 (ENSKMAG00000003374)	ATG2B (ENSKMAG00000003284) #9	ENSKMAG00000003248 #9	gskip (ENSKMAG00000003233) #10	npc2.1 (ENSKMAG00000003135) #11	isca2 (ENSKMAG00000003115) #12	EML5 (ENSKMAG00000002983) #13	ttc8 (ENSKMAG00000002905) #14	ENSKMAG00000002881 #15	ENSKMAG00000002868 ##20	ENSKMAG00000002860 #20	ENSKMAG00000002854 ##20	NEK9 (ENSKMAG00000002833) #21	ENSKMAG00000002818 #22	ENSKMAG00000002802 #23	ENSKMAG00000002599 #24	JDP2 (ENSKMAG00000002558) #25	FLVCR2 (ENSKMAG00000002511) #26	ERG28 (ENSKMAG00000002483) #28	ENSKMAG00000002437 #29	tgfb3 (ENSKMAG00000002413) #31	IFT43 (ENSKMAG00000002368) #32	GPATCH2L (ENSKMAG00000002351) #33	ESRRB (ENSKMAG00000002284) #34	prox2 (ENSKMAG00000002267) #35	dlst (ENSKMAG00000002252) #36	RPS6KL1 (ENSKMAG00000002235) #37	ENSKMAG00000002222	ENSKMAG00000002205
Turquoise killifish	MODERN SPECIES	1625	NGB (ENSNFUG00015021626)	coq6 (ENSNFUG00015021634)	ENTPD5 (ENSNFUG00015021720)	ENSNFUG00015021761	ALDH6A1 (ENSNFUG00015021782)	gstz1 (ENSNFUG00015022022)	zgc:163014 (ENSNFUG00015022030) #7	tmed8 (ENSNFUG00015022039) #8	gskip (ENSNFUG00015022080) #10	ISCA2 (ENSNFUG00015022087) #12	EML5 (ENSNFUG00015022102) #13	ttc8 (ENSNFUG00015022143) #14	ENSNFUG00015022179 #15	ENSNFUG00015022182	ENSNFUG00015022184 ##20	ENSNFUG00015022220 #22	ENSNFUG00015022229 #23	ENSNFUG00015012380 #24	JDP2 (ENSNFUG00015012547) #25	FLVCR2 (ENSNFUG00015012556) #27	ERG28 (ENSNFUG00015012618) #28	ENSNFUG00015012630 #29	TGFB3 (ENSNFUG00015012658) #31	IFT43 (ENSNFUG00015012668) #32	GPATCH2L (ENSNFUG00015012681) #33	ESRRB (ENSNFUG00015012693) #34	prox2 (ENSNFUG00015012731) #35	DLST (ENSNFUG00015012758) #36	RPS6KL1 (ENSNFUG00015012869) #37	HSD17B8 (ENSNFUG00015012901)	ENSNFUG00015012991
Cyprinodontoidei	ANCESTRAL SPECIES	8	ENSGT00390000006580	ENSGT00940000164710 #7	ENSGT00530000063651.b #8	ENSGT00950000183044.a.a.b	ENSGT00620000087966.a #9	ENSGT00390000009517 #10	ENSGT00390000006223 #11	ENSGT00390000005700 #12	ENSGT00940000156613 #13	ENSGT00940000156816 #14	ENSGT01030000234575.c.a.a.a.a.b.b.a #15	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.b ##20	ENSGT01030000234575.c.a.a.a.a.b.b.b #20	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.a ##20	ENSGT00940000156145 #21	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00940000164930.a #24	ENSGT00940000155693.a.b #25	ENSGT01030000234625.B.d.c.a #27	ENSGT00390000010925 #28	ENSGT00940000162910 #29	ENSGT00940000177781 #30	ENSGT00940000155747.g.a #31	ENSGT00390000012060 #32	ENSGT00410000025698.b #33	ENSGT00940000153433.A.f #34	ENSGT00940000154790.b.a.b #35	ENSGT00930000151014.q #36	ENSGT00940000159815 #37	ENSGT00940000155454.w.a.a
Poeciliinae	ANCESTRAL SPECIES	8	ENSGT00390000006580	ENSGT00940000164710 #7	ENSGT00530000063651.b #8	ENSGT00950000183044.a.a.b	ENSGT00620000087966.a #9	ENSGT00390000009517 #10	ENSGT00390000006223 #11	ENSGT00390000005700 #12	ENSGT00940000156613 #13	ENSGT00940000156816 #14	ENSGT01030000234575.c.a.a.a.a.b.b.a #15	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.b ##20	ENSGT01030000234575.c.a.a.a.a.b.b.b #20	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.a ##20	ENSGT00940000156145 #21	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00940000164930.a #24	ENSGT00940000155693.a.b #25	ENSGT01030000234625.B.d.c.a #27	ENSGT00390000010925 #28	ENSGT00940000162910 #29	ENSGT00940000155747.g.a #31	ENSGT00390000012060 #32	ENSGT00410000025698.b #33	ENSGT00940000153433.A.f #34	ENSGT00940000154790.b.a.b #35	ENSGT00930000151014.q #36	ENSGT00940000159815 #37	ENSGT00940000155454.w.a.a	ENSGT00940000155454.w.b
Poecilia	ANCESTRAL SPECIES	10	ENSGT00390000006580	ENSGT00940000164710 #7	ENSGT00530000063651.b #8	ENSGT00950000183044.a.a.b	ENSGT00620000087966.a #9	ENSGT00390000009517 #10	ENSGT00390000006223 #11	ENSGT00390000005700 #12	ENSGT00940000156613 #13	ENSGT00940000156816 #14	ENSGT01030000234575.c.a.a.a.a.b.b.a #15	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.b ##20	ENSGT01030000234575.c.a.a.a.a.b.b.b #20	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.a ##20	ENSGT00940000156145 #21	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00940000164930.a #24	ENSGT00940000155693.a.b #25	ENSGT01030000234625.B.d.c.a #27	ENSGT00390000010925 #28	ENSGT00940000162910 #29	ENSGT00940000155747.g.a #31	ENSGT00390000012060 #32	ENSGT00410000025698.b #33	ENSGT00940000153433.A.f #34	ENSGT00940000154790.b.a.b #35	ENSGT00930000151014.q #36	ENSGT00940000159815 #37	ENSGT00940000155454.w.a.a	ENSGT00940000155454.w.b
NAME_6	ANCESTRAL SPECIES	6	ENSGT00530000063651.b #8	ENSGT00950000183044.a.a.b	ENSGT00620000087966.a #9	ENSGT00390000009517.s #10	ENSGT00390000006223.c #11	ENSGT00390000009517.t #10	ENSGT00390000006223.d #11	ENSGT00390000005700 #12	ENSGT00940000156613 #13	ENSGT00940000156816 #14	ENSGT01030000234575.c.a.a.a.a.b.b.a #15	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.b ##20	ENSGT01030000234575.c.a.a.a.a.b.b.b #20	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.a ##20	ENSGT00940000156145 #21	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00940000164930.a #24	ENSGT00940000155693.a.b #25	ENSGT01030000234625.B.d.c.a #27	ENSGT00390000010925 #28	ENSGT00940000162910 #29	ENSGT00940000155747.g.a #31	ENSGT00390000012060 #32	ENSGT00410000025698.b #33	ENSGT00940000153433.A.f #34	ENSGT00940000154790.b.a.b #35	ENSGT00930000151014.q #36	ENSGT00940000159815 #37	ENSGT00940000155454.w.a.a	ENSGT00940000155454.w.b
Sailfin molly	MODERN SPECIES	364						ENSPLAG00000008095 #9	gskip (ENSPLAG00000008109) #10	NPC2 (ENSPLAG00000008128) #11	isca2 (ENSPLAG00000008136) #12	EML5 (ENSPLAG00000008373) #13	ttc8 (ENSPLAG00000008441) #14	ENSPLAG00000008463 #15	ENSPLAG00000008500 #20	ENSPLAG00000008590 ##20	NEK9 (ENSPLAG00000008620) #21	ENSPLAG00000008628 #22	ENSPLAG00000008640 #23	ENSPLAG00000009128 #24	FLVCR2 (ENSPLAG00000009186) #27	ERG28 (ENSPLAG00000009211) #28	ENSPLAG00000009224 #29	ENSPLAG00000009247 #29	tgfb3 (ENSPLAG00000009277) #31	IFT43 (ENSPLAG00000009287) #32	GPATCH2L (ENSPLAG00000009312) #33
Amazon molly	MODERN SPECIES	282	tmed8 (ENSPFOG00000015795) #8	ENSPFOG00000015794	gskip (ENSPFOG00000015740) #10	NPC2 (ENSPFOG00000015721) #11	ATG2B (ENSPFOG00000015576) #9	gskip (ENSPFOG00000015548) #10	NPC2 (ENSPFOG00000015546) #11	isca2 (ENSPFOG00000015543) #12	EML5 (ENSPFOG00000015280) #13	ttc8 (ENSPFOG00000015227) #14	ENSPFOG00000015213 #15	ENSPFOG00000022333 ##20	ENSPFOG00000015203 #20	ENSPFOG00000024162 ##20	NEK9 (ENSPFOG00000015097) #21	ENSPFOG00000015092 #22	ENSPFOG00000015041 #23	ENSPFOG00000015030 #24	JDP2 (ENSPFOG00000015014) #25	FLVCR2 (ENSPFOG00000014890) #27	ERG28 (ENSPFOG00000014865) #28	ENSPFOG00000014806 #29	tgfb3 (ENSPFOG00000014756) #31	IFT43 (ENSPFOG00000014703) #32	GPATCH2L (ENSPFOG00000014687) #33	ESRRB (ENSPFOG00000014654) #34	prox2 (ENSPFOG00000014635) #35	dlst (ENSPFOG00000014514) #36	RPS6KL1 (ENSPFOG00000014419) #37	ENSPFOG00000014381	ENSPFOG00000014372
Guppy	MODERN SPECIES	453	aldh6a1 (ENSPREG00000010333)	gstz1 (ENSPREG00000010267)	zgc:163014 (ENSPREG00000010237) #7	tmed8 (ENSPREG00000010221) #8	NOXRED1 (ENSPREG00000010209)	ATG2B (ENSPREG00000010076) #9	gskip (ENSPREG00000010046) #10	npc2.1 (ENSPREG00000009939) #11	isca2 (ENSPREG00000009920) #12	EML5 (ENSPREG00000009770) #13	ttc8 (ENSPREG00000009689) #14	ENSPREG00000009739 #15	ENSPREG00000009670 #20	ENSPREG00000009658 ##20	NEK9 (ENSPREG00000009628) #21	ENSPREG00000009615 #22	ENSPREG00000009604 #23	ENSPREG00000009598 #24	FLVCR2 (ENSPREG00000009584) #27	ERG28 (ENSPREG00000009563) #28	ENSPREG00000009465 #29	tgfb3 (ENSPREG00000009401) #31	IFT43 (ENSPREG00000009385) #32	GPATCH2L (ENSPREG00000009374) #33	ESRRB (ENSPREG00000009351) #34	prox2 (ENSPREG00000009326) #35	dlst (ENSPREG00000009199) #36	RPS6KL1 (ENSPREG00000009143) #37	ENSPREG00000009124	ENSPREG00000009113	ENSPREG00000009102
Platyfish	MODERN SPECIES	10	zgc:163014 (ENSXMAG00000015067) #7	tmed8 (ENSXMAG00000026398) #8	NOXRED1 (ENSXMAG00000024964)	ATG2B (ENSXMAG00000014982) #9	ENSXMAG00000023766 #9	gskip (ENSXMAG00000021582) #10	npc2.1 (ENSXMAG00000014967) #11	isca2 (ENSXMAG00000014962) #12	EML5 (ENSXMAG00000014899) #13	ttc8 (ENSXMAG00000014881) #14	ENSXMAG00000025642 #15	ENSXMAG00000020956 ##20	ENSXMAG00000028329 #20	ENSXMAG00000014872 ##20	NEK9 (ENSXMAG00000014847) #21	ENSXMAG00000028286 #22	ENSXMAG00000014821 #23	ENSXMAG00000021870 #24	JDP2 (ENSXMAG00000014805) #25	FLVCR2 (ENSXMAG00000026309) #27	ERG28 (ENSXMAG00000014769) #28	ENSXMAG00000014737 #29	tgfb3 (ENSXMAG00000014713) #31	IFT43 (ENSXMAG00000014700) #32	GPATCH2L (ENSXMAG00000029501) #33	ESRRB (ENSXMAG00000014672) #34	prox2 (ENSXMAG00000014663) #35	dlst (ENSXMAG00000014638) #36	RPS6KL1 (ENSXMAG00000014631) #37	ENSXMAG00000014621	ENSXMAG00000014617
NAME_4	ANCESTRAL SPECIES	18	ENSGT00940000154427.A.c	ENSGT00940000156110.c.a	ENSGT00390000006580	ENSGT00940000164710 #7	ENSGT00530000063651.b #8	ENSGT00950000183044.a.a.b	ENSGT00620000087966.a #9	ENSGT00390000009517 #10	ENSGT00390000006223 #11	ENSGT00390000005700 #12	ENSGT00940000156613 #13	ENSGT00940000156816 #14	ENSGT01030000234575.c.a.a.a.a.b.b.a #15	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.b ##20	ENSGT00940000156145 #21	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00940000164930.a #24	ENSGT00940000155693.a.b #25	ENSGT01030000234625.B.d.d.b.a #26	ENSGT00390000010925 #28	ENSGT00940000162910 #29	ENSGT00940000177781 #30	ENSGT00940000155747.g.a #31	ENSGT00390000012060 #32	ENSGT00410000025698.b #33	ENSGT00940000153433.A.f #34	ENSGT00940000154790.b.a.b #35	ENSGT00930000151014.q #36	ENSGT00940000159815 #37	ENSGT00940000155454.w.a.a
Sheepshead minnow	MODERN SPECIES	490	BBOF1 (ENSCVAG00000022881)	aldh6a1 (ENSCVAG00000022872)	gstz1 (ENSCVAG00000022840)	zgc:163014 (ENSCVAG00000022830) #7	tmed8 (ENSCVAG00000022808) #8	ATG2B (ENSCVAG00000022803) #9	ENSCVAG00000022783 #9	gskip (ENSCVAG00000022739) #10	npc2.1 (ENSCVAG00000022728) #11	isca2 (ENSCVAG00000022712) #12	EML5 (ENSCVAG00000022697) #13	ttc8 (ENSCVAG00000022602) #14	ENSCVAG00000022550 #15	ENSCVAG00000022544 ##20	NEK9 (ENSCVAG00000022531) #21	ENSCVAG00000022493 #22	MLH3 (ENSCVAG00000022485) #23	ENSCVAG00000022477 #24	JDP2 (ENSCVAG00000022457) #25	FLVCR2 (ENSCVAG00000022444) #26	ERG28 (ENSCVAG00000022413) #28	ENSCVAG00000022405 #29	ENSCVAG00000022394 #30	tgfb3 (ENSCVAG00000000577) #31	IFT43 (ENSCVAG00000022374) #32	GPATCH2L (ENSCVAG00000022365) #33	ESRRB (ENSCVAG00000022357) #34	prox2 (ENSCVAG00000022322) #35	dlst (ENSCVAG00000022292) #36	RPS6KL1 (ENSCVAG00000022286) #37	ENSCVAG00000022271
Mummichog	MODERN SPECIES	99																ENSFHEG00000017548 #22	ENSFHEG00000017559 #23	ENSFHEG00000017571 #23
Percomorphaceae_C	ANCESTRAL SPECIES	12	ENSGT00940000164710 #7	ENSGT00530000063651.b #8	ENSGT00950000183044.a.a.b	ENSGT00620000087966.a #9	ENSGT00390000009517 #10	ENSGT00390000006223 #11	ENSGT00390000005700 #12	ENSGT00940000156613 #13	ENSGT00940000156816 #14	ENSGT01030000234575.c.a.a.a.a.b.b.a #15	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.b ##20	ENSGT01030000234575.c.a.a.a.a.b.b.b #20	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.a ##20	ENSGT01030000234575.c.a.a.a.a.b.a.a.b ##20	ENSGT00940000156145 #21	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00940000164930.a #24	ENSGT00940000155693.a.b #25	ENSGT01030000234625.B.d.c.a #27	ENSGT01030000234625.B.d.d.b.a #26	ENSGT00390000010925 #28	ENSGT00940000162910 #29	ENSGT00940000162939	ENSGT00940000155747.g.a #31	ENSGT00390000012060 #32	ENSGT00410000025698.b #33	ENSGT00940000153433.A.f #34	ENSGT00940000154790.b.a.b #35	ENSGT00930000151014.q #36	ENSGT00940000159815 #37
Eupercaria	ANCESTRAL SPECIES	9	ENSGT00940000164710 #7	ENSGT00530000063651.b #8	ENSGT00950000183044.a.a.b	ENSGT00620000087966.a #9	ENSGT00390000009517 #10	ENSGT00390000006223 #11	ENSGT00390000005700 #12	ENSGT00940000156613 #13	ENSGT00940000156816 #14	ENSGT01030000234575.c.a.a.a.a.b.b.a #15	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.b ##20	ENSGT01030000234575.c.a.a.a.a.b.b.b #20	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.a ##20	ENSGT01030000234575.c.a.a.a.a.b.a.a.b ##20	ENSGT00940000156145 #21	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00940000164930.a #24	ENSGT00940000155693.a.b #25	ENSGT01030000234625.B.d.c.a #27	ENSGT00390000010925 #28	ENSGT00940000162910 #29	ENSGT00940000162939	ENSGT00940000155747.g.a #31	ENSGT00390000012060 #32	ENSGT00410000025698.b #33	ENSGT00940000153433.A.f #34	ENSGT00940000154790.b.a.b #35	ENSGT00930000151014.q #36	ENSGT00940000159815 #37	ENSGT00940000155454.w.a.b
Tetraodontidae	ANCESTRAL SPECIES	3	ENSGT00390000006580	ENSGT00940000164710 #7	ENSGT00530000063651.b #8	ENSGT00620000087966.a #9	ENSGT00390000009517 #10	ENSGT00390000006223 #11	ENSGT00390000005700 #12	ENSGT00940000156613 #13	ENSGT00940000156816 #14	ENSGT01030000234575.c.a.a.a.a.b.b.a #15	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.b ##20	ENSGT01030000234575.c.a.a.a.a.b.b.b #20	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.a ##20	ENSGT01030000234575.c.a.a.a.a.b.a.a.b ##20	ENSGT00940000156145 #21	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00940000164930.a #24	ENSGT00940000155693.a.b #25	ENSGT01030000234625.B.d.d.a ##27	ENSGT00390000010925 #28	ENSGT00940000162910 #29	ENSGT00940000155747.g.a #31	ENSGT00390000012060 #32	ENSGT00410000025698.b #33	ENSGT00940000153433.A.f #34	ENSGT00940000154790.b.a.b #35	ENSGT00930000151014.q #36	ENSGT00940000159815 #37	ENSGT00940000155454.w.a.b	ENSGT00940000155454.w.b
Fugu	MODERN SPECIES	11	bbof1 (ENSTRUG00000018223)	aldh6a1 (ENSTRUG00000018226)	gstz1 (ENSTRUG00000032191)	zgc:163014 (ENSTRUG00000019659) #7	tmed8 (ENSTRUG00000018236) #8	ATG2B (ENSTRUG00000018239) #9	gskip (ENSTRUG00000018266) #10	npc2.1 (ENSTRUG00000018269) #11	isca2 (ENSTRUG00000028337) #12	ttc8 (ENSTRUG00000018291) #14	ENSTRUG00000018294 #15	ENSTRUG00000023246 ##20	ENSTRUG00000032404 #20	ENSTRUG00000026423 ##20	NEK9 (ENSTRUG00000018297) #21	ENSTRUG00000025329 #22	ENSTRUG00000018306 #23	TMED10 (ENSTRUG00000018311)	ENSTRUG00000018314 #24	JDP2 (ENSTRUG00000029600) #25	FLVCR2 (ENSTRUG00000018328) ##27	ERG28 (ENSTRUG00000032681) #28	ENSTRUG00000018337 #29	tgfb3 (ENSTRUG00000023926) #31	IFT43 (ENSTRUG00000018345) #32	GPATCH2L (ENSTRUG00000018346) #33	ESRRB (ENSTRUG00000018347) #34	prox2 (ENSTRUG00000023052) #35	dlst (ENSTRUG00000018357) #36	RPS6KL1 (ENSTRUG00000015530) #37	ENSTRUG00000015523
Tetraodon	MODERN SPECIES	1	ENTPD5 (ENSTNIG00000017389)	bbof1 (ENSTNIG00000017390)	aldh6a1 (ENSTNIG00000017391)	gstz1 (ENSTNIG00000017392)	zgc:163014 (ENSTNIG00000017393) #7	tmed8 (ENSTNIG00000017394) #8	ATG2B (ENSTNIG00000017395) #9	ENSTNIG00000017396 #9	gskip (ENSTNIG00000017397) #10	npc2.1 (ENSTNIG00000017398) #11	isca2 (ENSTNIG00000017399) #12	EML5 (ENSTNIG00000017400) #13	ENSTNIG00000000369	ENSTNIG00000017401 ##20	NEK9 (ENSTNIG00000017402) #21	ENSTNIG00000017403 #22	ENSTNIG00000017404 #23	ENSTNIG00000017405 #24	JDP2 (ENSTNIG00000017406) #25	FLVCR2 (ENSTNIG00000017407) ##27	ERG28 (ENSTNIG00000017408) #28	ENSTNIG00000017409 #29	tgfb3 (ENSTNIG00000017410) #31	IFT43 (ENSTNIG00000017411) #32	GPATCH2L (ENSTNIG00000017412) #33	ESRRB (ENSTNIG00000017413) #34	dlst (ENSTNIG00000017415) #36	prox2 (ENSTNIG00000017414) #35	dlst (ENSTNIG00000017416) #36	RPS6KL1 (ENSTNIG00000017417) #37	ENSTNIG00000017418
Eupecaria_A	ANCESTRAL SPECIES	10	ENSGT00940000164710 #7	ENSGT00530000063651.b #8	ENSGT00950000183044.a.a.b	ENSGT00620000087966.a #9	ENSGT00390000009517 #10	ENSGT00390000006223 #11	ENSGT00390000005700 #12	ENSGT00940000156613 #13	ENSGT00940000156816 #14	ENSGT01030000234575.c.a.a.a.a.b.b.a #15	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.b ##20	ENSGT01030000234575.c.a.a.a.a.b.b.b #20	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.a ##20	ENSGT01030000234575.c.a.a.a.a.b.a.a.b ##20	ENSGT00940000156145 #21	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00940000164930.a #24	ENSGT00940000155693.a.b #25	ENSGT01030000234625.B.d.c.a #27	ENSGT00390000010925 #28	ENSGT00940000162910 #29	ENSGT00940000162939	ENSGT00940000155747.g.a #31	ENSGT00390000012060 #32	ENSGT00410000025698.b #33	ENSGT00940000153433.A.f #34	ENSGT00940000154790.b.a.b #35	ENSGT00930000151014.q #36	ENSGT00940000159815 #37	ENSGT00940000155454.w.a.b
Ballan wrasse	MODERN SPECIES	29	gstz1 (ENSLBEG00000001373)	zgc:163014 (ENSLBEG00000001345) #7	tmed8 (ENSLBEG00000001312) #8	NOXRED1 (ENSLBEG00000001306)	ATG2B (ENSLBEG00000001237) #9	ENSLBEG00000001213 #9	gskip (ENSLBEG00000001173) #10	npc2.1 (ENSLBEG00000001160) #11	isca2 (ENSLBEG00000001106) #12	EML5 (ENSLBEG00000000868) #13	ttc8 (ENSLBEG00000000763) #14	ENSLBEG00000000754 #15	ENSLBEG00000000747 ##20	ENSLBEG00000000741 ##20	NEK9 (ENSLBEG00000000718) #21	ENSLBEG00000000708 #22	ENSLBEG00000000695 #23	ENSLBEG00000000673 #24	JDP2 (ENSLBEG00000000660) #25	ENSLBEG00000000640 #26	FLVCR2 (ENSLBEG00000000549) #27	ERG28 (ENSLBEG00000000516) #28	ENSLBEG00000000473 #29	tgfb3 (ENSLBEG00000000436) #31	IFT43 (ENSLBEG00000000378) #32	GPATCH2L (ENSLBEG00000000361) #33	ESRRB (ENSLBEG00000000330) #34	prox2 (ENSLBEG00000000305) #35	dlst (ENSLBEG00000000267) #36	RPS6KL1 (ENSLBEG00000000250) #37	ENSLBEG00000000245
Eupecaria_B	ANCESTRAL SPECIES	11	ENSGT00940000164710 #7	ENSGT00530000063651.b #8	ENSGT00950000183044.a.a.b	ENSGT00620000087966.a #9	ENSGT00390000009517 #10	ENSGT00390000006223 #11	ENSGT00390000005700 #12	ENSGT00940000156613 #13	ENSGT00940000156816 #14	ENSGT01030000234575.c.a.a.a.a.b.b.a #15	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.b ##20	ENSGT01030000234575.c.a.a.a.a.b.b.b #20	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.a ##20	ENSGT01030000234575.c.a.a.a.a.b.a.a.b ##20	ENSGT00940000156145 #21	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00940000164930.a #24	ENSGT00940000155693.a.b #25	ENSGT01030000234625.B.d.c.a #27	ENSGT00390000010925 #28	ENSGT00940000162910 #29	ENSGT00940000162939	ENSGT00940000155747.g.a #31	ENSGT00390000012060 #32	ENSGT00410000025698.b #33	ENSGT00940000153433.A.f #34	ENSGT00940000154790.b.a.b #35	ENSGT00930000151014.q #36	ENSGT00940000159815 #37	ENSGT00940000155454.w.a.b
Perciformes	ANCESTRAL SPECIES	12	ENSGT00940000156110.c.a	ENSGT00390000006580	ENSGT00940000164710 #7	ENSGT00530000063651.b #8	ENSGT00950000183044.a.a.b	ENSGT00620000087966.a #9	ENSGT00390000009517 #10	ENSGT00390000006223 #11	ENSGT00390000005700 #12	ENSGT00940000156613 #13	ENSGT00940000156816 #14	ENSGT01030000234575.c.a.a.a.a.b.b.a #15	ENSGT00940000174567 #16	ENSGT01030000234575.c.a.a.a.a.b.a.a.b ##20	ENSGT00940000156145 #21	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00940000164930.a #24	ENSGT00940000155693.a.b #25	ENSGT01030000234625.B.d.c.a #27	ENSGT00390000010925 #28	ENSGT00940000162910 #29	ENSGT00940000162939	ENSGT00940000155747.g.a #31	ENSGT00390000012060 #32	ENSGT00410000025698.b #33	ENSGT00940000153433.A.f #34	ENSGT00940000154790.b.a.b #35	ENSGT00930000151014.q #36	ENSGT00940000159815 #37	ENSGT00940000155454.w.a.a
Cottioidei	ANCESTRAL SPECIES	8	ENSGT00940000154427.A	ENSGT00940000156110.c.a	ENSGT00390000006580	ENSGT00940000164710 #7	ENSGT00530000063651.b #8	ENSGT00950000183044.a.a.b	ENSGT00620000087966.a #9	ENSGT00390000009517 #10	ENSGT00390000006223 #11	ENSGT00390000005700 #12	ENSGT00940000156613 #13	ENSGT00940000156816 #14	ENSGT01030000234575.c.a.a.a.a.b.b.a #15	ENSGT01030000234575.c.a.a.a.a.b.a.a.b ##20	ENSGT00940000156145 #21	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00940000164930.a #24	ENSGT00940000155693.a.b #25	ENSGT01030000234625.B.d.c.a #27	ENSGT00390000010925 #28	ENSGT00940000162910 #29	ENSGT00940000162939	ENSGT00940000155747.g.a #31	ENSGT00390000012060 #32	ENSGT00410000025698.b #33	ENSGT00940000153433.A.f #34	ENSGT00940000154790.b.a.b #35	ENSGT00930000151014.q #36	ENSGT00940000159815 #37	ENSGT00940000155454.w.a.a
Lumpfish	MODERN SPECIES	14	coq6 (ENSCLMG00005015794)	ENTPD5 (ENSCLMG00005015790)	ENSCLMG00005015789	aldh6a1 (ENSCLMG00005015788)	gstz1 (ENSCLMG00005015751)	zgc:163014 (ENSCLMG00005015746) #7	tmed8 (ENSCLMG00005015743) #8	NOXRED1 (ENSCLMG00005015741)	ATG2B (ENSCLMG00005015730) #9	gskip (ENSCLMG00005015720) #10	npc2.1 (ENSCLMG00005015719) #11	isca2 (ENSCLMG00005015717) #12	ttc8 (ENSCLMG00005015714) #14	ENSCLMG00005015711 #15	NEK9 (ENSCLMG00005015709) #21	ENSCLMG00005015702 #22	ENSCLMG00005015701 #23	ENSCLMG00005015699 #23	ENSCLMG00005015697	ENSCLMG00005015619 #24	JDP2 (ENSCLMG00005015616) #25	FLVCR2 (ENSCLMG00005015510) #26	ERG28 (ENSCLMG00005015509) #28	ENSCLMG00005015507 #29	ENSCLMG00005015505	tgfb3 (ENSCLMG00005015502) #31	IFT43 (ENSCLMG00005015500) #32	GPATCH2L (ENSCLMG00005015496) #33	ESRRB (ENSCLMG00005015485) #34	prox2 (ENSCLMG00005015484) #35	dlst (ENSCLMG00005015474) #36
Perciformes_a	ANCESTRAL SPECIES	10	ENSGT00940000156110.c.a	ENSGT00390000006580	ENSGT00940000164710 #7	ENSGT00530000063651.b #8	ENSGT00950000183044.a.a.b	ENSGT00620000087966.a #9	ENSGT00390000009517 #10	ENSGT00390000006223 #11	ENSGT00390000005700 #12	ENSGT00940000156613 #13	ENSGT00940000156816 #14	ENSGT01030000234575.c.a.a.a.a.b.b.a #15	ENSGT00940000174567 #16	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.a ##20	ENSGT00940000156145 #21	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00940000164930.a #24	ENSGT00940000155693.a.b #25	ENSGT01030000234625.B.d.c.a #27	ENSGT00390000010925 #28	ENSGT00940000162910 #29	ENSGT00940000155747.g.a #31	ENSGT00390000012060 #32	ENSGT00410000025698.b #33	ENSGT00940000153433.A.f #34	ENSGT00940000154790.b.a.b #35	ENSGT00930000151014.q #36	ENSGT00940000159815 #37	ENSGT00940000155454.w.a.a	ENSGT00940000155454.w.b
Channel bull blenny	MODERN SPECIES	14	tmed8 (ENSCGOG00000016344) #8	NOXRED1 (ENSCGOG00000013560)	gskip (ENSCGOG00000013661) #10	npc2.1 (ENSCGOG00000013663) #11	isca2 (ENSCGOG00000013669) #12	EML5 (ENSCGOG00000013694) #13	ttc8 (ENSCGOG00000014174) #14	ENSCGOG00000014670 #15	ENSCGOG00000014671 #16	ENSCGOG00000014672 #20	ENSCGOG00000014674	ENSCGOG00000014676 ##20	NEK9 (ENSCGOG00000014695) #21	ENSCGOG00000015174 ##20	ENSCGOG00000015177 ##20	ENSCGOG00000015179 #22	ENSCGOG00000015182 #23	ENSCGOG00000015200	ENSCGOG00000015204 #24	JDP2 (ENSCGOG00000015205) #25	FLVCR2 (ENSCGOG00000015208) #26	ERG28 (ENSCGOG00000015304) #28	ENSCGOG00000015308 #29	tgfb3 (ENSCGOG00000015422) #31	IFT43 (ENSCGOG00000015428) #32	GPATCH2L (ENSCGOG00000015440) #33	ENSCGOG00000015443	ESRRB (ENSCGOG00000015447) #34	prox2 (ENSCGOG00000015475) #35	dlst (ENSCGOG00000015478) #36	RPS6KL1 (ENSCGOG00000015734) #37
Pike perch	MODERN SPECIES	5	ENTPD5 (ENSSLUG00000009327)	bbof1 (ENSSLUG00000009317)	aldh6a1 (ENSSLUG00000008832)	gstz1 (ENSSLUG00000008752)	zgc:163014 (ENSSLUG00000008741) #7	ENSSLUG00000008737	ATG2B (ENSSLUG00000008502) #9	gskip (ENSSLUG00000008474) #10	npc2.1 (ENSSLUG00000008460) #11	isca2 (ENSSLUG00000008453) #12	EML5 (ENSSLUG00000008424) #13	ttc8 (ENSSLUG00000007907) #14	ENSSLUG00000007868 #15	ENSSLUG00000007860 #16	NEK9 (ENSSLUG00000007818) #21	ENSSLUG00000007803 #22	ENSSLUG00000007796 #23	ENSSLUG00000007777 #23	ENSSLUG00000007754	ENSSLUG00000007737 #24	JDP2 (ENSSLUG00000007731) #25	FLVCR2 (ENSSLUG00000007709) #27	ERG28 (ENSSLUG00000007698) #28	ENSSLUG00000007653 #29	tgfb3 (ENSSLUG00000007633) #31	IFT43 (ENSSLUG00000007621) #32	ENSSLUG00000007616	GPATCH2L (ENSSLUG00000007608) #33	ESRRB (ENSSLUG00000007571) #34	prox2 (ENSSLUG00000007548) #35	dlst (ENSSLUG00000006732) #36
Eupecaria_C	ANCESTRAL SPECIES	8	ENSGT00940000164710 #7	ENSGT00530000063651.b #8	ENSGT00950000183044.a.a.b	ENSGT00620000087966.a #9	ENSGT00390000009517 #10	ENSGT00390000006223 #11	ENSGT00390000005700 #12	ENSGT00940000156613 #13	ENSGT00940000156816 #14	ENSGT01030000234575.c.a.a.a.a.b.b.a #15	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.b ##20	ENSGT01030000234575.c.a.a.a.a.b.b.b #20	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.a ##20	ENSGT01030000234575.c.a.a.a.a.b.a.a.b ##20	ENSGT00940000156145 #21	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00940000164930.a #24	ENSGT00940000155693.a.b #25	ENSGT01030000234625.B.d.d.b.a #26	ENSGT00390000010925 #28	ENSGT00940000162910 #29	ENSGT00940000177781 #30	ENSGT00940000155747.g.a #31	ENSGT00390000012060 #32	ENSGT00410000025698.b #33	ENSGT00940000153433.A.f #34	ENSGT00940000154790.b.a.b #35	ENSGT00930000151014.q #36	ENSGT00940000159815 #37	ENSGT00940000155454.w.a.b
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	16	ENSGT00940000164710 #7	ENSGT00530000063651.b #8	ENSGT00950000183044.a.a.b	ENSGT00620000087966.a #9	ENSGT00390000009517 #10	ENSGT00390000006223 #11	ENSGT00390000005700 #12	ENSGT00940000156613 #13	ENSGT00940000156816 #14	ENSGT01030000234575.c.a.a.a.a.b.b.a #15	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.b ##20	ENSGT01030000234575.c.a.a.a.a.b.b.b #20	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.a ##20	ENSGT01030000234575.c.a.a.a.a.b.a.a.b ##20	ENSGT00940000156145 #21	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00940000164930.a #24	ENSGT00940000155693.a.b #25	ENSGT01030000234625.B.d.d.b.a #26	ENSGT00390000010925 #28	ENSGT00940000162910 #29	ENSGT00940000155747.g.a #31	ENSGT00390000012060 #32	ENSGT00410000025698.b #33	ENSGT00940000153433.A.f #34	ENSGT00940000154790.b.a.b #35	ENSGT00930000151014.q #36	ENSGT00940000159815 #37	ENSGT00940000155454.w.a.b	ENSGT00940000155454.w.a.a
Large yellow croaker	MODERN SPECIES	495	aldh6a1 (ENSLCRG00005017273)	gstz1 (ENSLCRG00005017343)	zgc:163014 (ENSLCRG00005017345) #7	tmed8 (ENSLCRG00005017347) #8	ATG2B (ENSLCRG00005017352) #9	gskip (ENSLCRG00005017360) #10	npc2.1 (ENSLCRG00005017361) #11	isca2 (ENSLCRG00005017363) #12	EML5 (ENSLCRG00005017364) #13	ttc8 (ENSLCRG00005017368) #14	ENSLCRG00005017370 ##20	ENSLCRG00005017371 #20	ENSLCRG00005017374 ##20	ENSLCRG00005017375 ##20	NEK9 (ENSLCRG00005017376) #21	ENSLCRG00005017377 #22	MLH3 (ENSLCRG00005017378) #23	ENSLCRG00005017379 #24	JDP2 (ENSLCRG00005017390) #25	FLVCR2 (ENSLCRG00005017394) #26	ERG28 (ENSLCRG00005017404) #28	ENSLCRG00005017425 #29	tgfb3 (ENSLCRG00005017482) #31	IFT43 (ENSLCRG00005017486) #32	GPATCH2L (ENSLCRG00005017489) #33	esrrb (ENSLCRG00005017492) #34	prox2 (ENSLCRG00005017493) #35	dlst (ENSLCRG00005017494) #36	RPS6KL1 (ENSLCRG00005017499) #37	ENSLCRG00005017501	ENSLCRG00005017502
European seabass	MODERN SPECIES	2	ENTPD5 (ENSDLAG00005011835)	BBOF1 (ENSDLAG00005011826)	aldh6a1 (ENSDLAG00005011476)	gstz1 (ENSDLAG00005033795)	zgc:163014 (ENSDLAG00005033476) #7	tmed8 (ENSDLAG00005010779) #8	NOXRED1 (ENSDLAG00005010764)	ENSDLAG00005010692 #9	ENSDLAG00005030109 #12	ENSDLAG00005009980 #13	ENSDLAG00005027218 #14	ENSDLAG00005009750 #15	ENSDLAG00005026725 ##20	ENSDLAG00005009693 ##20	ENSDLAG00005009493 #21	ENSDLAG00005009475 #22	ENSDLAG00005009467 #23	ENSDLAG00005009432 #24	JDP2 (ENSDLAG00005031903) #25	FLVCR2 (ENSDLAG00005009385) #26	ERG28 (ENSDLAG00005034440) #28	ENSDLAG00005009162 #29	tgfb3 (ENSDLAG00005028845) #31	IFT43 (ENSDLAG00005009135) #32	GPATCH2L (ENSDLAG00005009129) #33	ESRRB (ENSDLAG00005009106) #34	prox2 (ENSDLAG00005009097) #35	dlst (ENSDLAG00005008982) #36	RPS6KL1 (ENSDLAG00005008969) #37	ENSDLAG00005008961	ENSDLAG00005008957
Gilthead seabream	MODERN SPECIES	7	ATG2B (ENSSAUG00010005053) #9	gskip (ENSSAUG00010005050) #10	npc2.1 (ENSSAUG00010005049) #11	isca2 (ENSSAUG00010005048) #12	EML5 (ENSSAUG00010004876) #13	ttc8 (ENSSAUG00010004793) #14	ENSSAUG00010004788 #15	ENSSAUG00010004786 ##20	ENSSAUG00010004784 #20	ENSSAUG00010004781 ##20	ENSSAUG00010004776 ##20	ENSSAUG00010004773 ##20	ENSSAUG00010004771 ##20	NEK9 (ENSSAUG00010004754) #21	ENSSAUG00010004744	ENSSAUG00010004741 #22	ENSSAUG00010004735 #23	ENSSAUG00010004732	ENSSAUG00010004727 #24	JDP2 (ENSSAUG00010004723) #25	FLVCR2 (ENSSAUG00010004003) #27	ERG28 (ENSSAUG00010003977) #28	ENSSAUG00010003969 #29	ENSSAUG00010003967 #30	tgfb3 (ENSSAUG00010003964) #31	IFT43 (ENSSAUG00010003957) #32	GPATCH2L (ENSSAUG00010003952) #33	ESRRB (ENSSAUG00010003939) #34	prox2 (ENSSAUG00010003934) #35	dlst (ENSSAUG00010003627) #36	RPS6KL1 (ENSSAUG00010003609) #37
Percomorphaceae_D	ANCESTRAL SPECIES	10	ENSGT00530000063651.b #8	ENSGT00950000183044.a.a.b	ENSGT00620000087966.a #9	ENSGT00390000009517 #10	ENSGT00390000006223 #11	ENSGT00390000005700 #12	ENSGT00940000156613 #13	ENSGT00940000156816 #14	ENSGT01030000234575.c.a.a.a.a.b.b.a #15	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.b ##20	ENSGT01030000234575.c.a.a.a.a.b.b.b #20	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.a ##20	ENSGT01030000234575.c.a.a.a.a.b.a.a.b ##20	ENSGT00940000156145 #21	ENSGT00970000197206	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00940000164930.a #24	ENSGT00940000155693.a.b #25	ENSGT01030000234625.B.d.c.a #27	ENSGT01030000234625.B.d.d.b.a #26	ENSGT00390000010925 #28	ENSGT00940000162910 #29	ENSGT00940000155747.g.a #31	ENSGT00390000012060 #32	ENSGT00410000025698.b #33	ENSGT00940000153433.A.f #34	ENSGT00940000154790.b.a.b #35	ENSGT00930000151014.q #36	ENSGT00940000159815 #37	ENSGT00940000155454.w.a.b
Carangaria	ANCESTRAL SPECIES	10	ENSGT00530000063651.b #8	ENSGT00950000183044.a.a.b	ENSGT00620000087966.a #9	ENSGT00390000009517 #10	ENSGT00390000006223 #11	ENSGT00390000005700 #12	ENSGT00940000156613 #13	ENSGT00940000156816 #14	ENSGT01030000234575.c.a.a.a.a.b.b.a #15	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.b ##20	ENSGT01030000234575.c.a.a.a.a.b.b.b #20	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.a ##20	ENSGT01030000234575.c.a.a.a.a.b.a.a.b ##20	ENSGT00940000156145 #21	ENSGT00970000197206	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00940000164930.a #24	ENSGT00940000155693.a.b #25	ENSGT01030000234625.B.d.c.a #27	ENSGT01030000234625.B.d.d.b.a #26	ENSGT00390000010925 #28	ENSGT00940000162910 #29	ENSGT00940000155747.g.a #31	ENSGT00390000012060 #32	ENSGT00410000025698.b #33	ENSGT00940000153433.A.f #34	ENSGT00940000154790.b.a.b #35	ENSGT00930000151014.q #36	ENSGT00940000159815 #37	ENSGT00940000155454.w.a.b
Pleuronectoidei	ANCESTRAL SPECIES	5	ENSGT00940000164710 #7	ENSGT00530000063651.b #8	ENSGT00950000183044.a.a.b	ENSGT00620000087966.a #9	ENSGT00390000009517 #10	ENSGT00390000006223 #11	ENSGT00390000005700 #12	ENSGT00940000156613 #13	ENSGT00940000156816 #14	ENSGT01030000234575.c.a.a.a.a.b.b.a #15	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.b ##20	ENSGT01030000234575.c.a.a.a.a.b.b.b #20	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.a ##20	ENSGT01030000234575.c.a.a.a.a.b.a.a.b ##20	ENSGT00940000156145 #21	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00940000164930.a #24	ENSGT00940000155693.a.b #25	ENSGT01030000234625.B.d.c.a #27	ENSGT01030000234625.B.d.d.b.a #26	ENSGT00390000010925 #28	ENSGT00940000162910 #29	ENSGT00940000155747.g.a #31	ENSGT00390000012060 #32	ENSGT00410000025698.b #33	ENSGT00940000153433.A.f #34	ENSGT00940000154790.b.a.b #35	ENSGT00930000151014.q #36	ENSGT00940000159815 #37	ENSGT00940000155454.w.a.a
Tongue sole	MODERN SPECIES		ENSCSEG00000000689	OLFM4 (ENSCSEG00000000680)	RPS6KL1 (ENSCSEG00000000673) #37	dlst (ENSCSEG00000000659) #36	prox2 (ENSCSEG00000000653) #35	ESRRB (ENSCSEG00000000639) #34	GPATCH2L (ENSCSEG00000000629) #33	IFT43 (ENSCSEG00000000620) #32	tgfb3 (ENSCSEG00000000606) #31	EML5 (ENSCSEG00000000603) #13	ttc8 (ENSCSEG00000000589) #14	ENSCSEG00000000602 #15	ENSCSEG00000000586 #16	ENSCSEG00000000582 ##20	NEK9 (ENSCSEG00000000555) #21	ENSCSEG00000000548 #22	ENSCSEG00000000543 #23	ENSCSEG00000000541 #24	JDP2 (ENSCSEG00000000539) #25	FLVCR2 (ENSCSEG00000000535) #26	ERG28 (ENSCSEG00000000527) #28	ENSCSEG00000000524 #29	ENSCSEG00000000518	ENSCSEG00000000517 #13	ENSCSEG00000000470 #13	isca2 (ENSCSEG00000000464) #12	npc2.1 (ENSCSEG00000000425) #11	gskip (ENSCSEG00000000416) #10	ATG2B (ENSCSEG00000000401) #9	tmed8 (ENSCSEG00000000389) #8	zgc:163014 (ENSCSEG00000000383) #7
Turbot	MODERN SPECIES	8	zgc:163014 (ENSSMAG00000003977) #7	tmed8 (ENSSMAG00000003995) #8	NOXRED1 (ENSSMAG00000004004)	ENSSMAG00000004020 #9	gskip (ENSSMAG00000004108) #10	npc2.1 (ENSSMAG00000004121) #11	isca2 (ENSSMAG00000004340) #12	ENSSMAG00000004349 #13	ENSSMAG00000004472 #14	ENSSMAG00000034211 #15	ENSSMAG00000004547 ##20	ENSSMAG00000030338 #20	ENSSMAG00000026527 ##20	ENSSMAG00000026437 ##20	ENSSMAG00000004624 #21	ENSSMAG00000025652 #22	ENSSMAG00000004726 #23	ENSSMAG00000004752 #24	JDP2 (ENSSMAG00000004762) #25	ENSSMAG00000032870 #27	FLVCR2 (ENSSMAG00000004773) #26	ERG28 (ENSSMAG00000031469) #28	ENSSMAG00000004813 #29	tgfb3 (ENSSMAG00000004837) #31	IFT43 (ENSSMAG00000004865) #32	GPATCH2L (ENSSMAG00000004907) #33	ESRRB (ENSSMAG00000004937) #34	prox2 (ENSSMAG00000004975) #35	dlst (ENSSMAG00000004993) #36	RPS6KL1 (ENSSMAG00000024937) #37	LRRC74A (ENSSMAG00000005061)
Carangaria_A	ANCESTRAL SPECIES	4	ENSGT00530000063651.b #8	ENSGT00950000183044.a.a.b	ENSGT00620000087966.a #9	ENSGT00390000009517 #10	ENSGT00390000006223 #11	ENSGT00390000005700 #12	ENSGT00940000156613 #13	ENSGT00940000156816 #14	ENSGT01030000234575.c.a.a.a.a.b.b.a #15	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.b ##20	ENSGT01030000234575.c.a.a.a.a.b.b.b #20	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.a ##20	ENSGT01030000234575.c.a.a.a.a.b.a.a.b ##20	ENSGT00940000156145 #21	ENSGT00970000197206	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00940000164930.a #24	ENSGT00940000155693.a.b #25	ENSGT01030000234625.B.d.d.b.a #26	ENSGT00390000010925 #28	ENSGT00940000162910 #29	ENSGT00940000155747.g.a #31	ENSGT00390000012060 #32	ENSGT00410000025698.b #33	ENSGT00940000153433.A.f #34	ENSGT00940000154790.b.a.b #35	ENSGT00930000151014.q #36	ENSGT00940000159815 #37	ENSGT00940000155454.w.a.b	ENSGT00940000155454.w.a.a
Seriola	ANCESTRAL SPECIES	3	ENSGT00530000063651.b #8	ENSGT00950000183044.a.a.b	ENSGT00620000087966.a #9	ENSGT00390000009517 #10	ENSGT00390000006223 #11	ENSGT00390000005700 #12	ENSGT00940000156613 #13	ENSGT00940000156816 #14	ENSGT01030000234575.c.a.a.a.a.b.b.a #15	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.b ##20	ENSGT01030000234575.c.a.a.a.a.b.b.b #20	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.a.i ##20	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.a.j ##20	ENSGT01030000234575.c.a.a.a.a.b.a.a.b ##20	ENSGT00940000156145 #21	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00940000164930.a #24	ENSGT00940000155693.a.b #25	ENSGT01030000234625.B.d.d.b.a #26	ENSGT00390000010925 #28	ENSGT00940000162910 #29	ENSGT00940000155747.g.a #31	ENSGT00390000012060 #32	ENSGT00410000025698.b #33	ENSGT00940000153433.A.f #34	ENSGT00940000154790.b.a.b #35	ENSGT00930000151014.q #36	ENSGT00940000159815 #37	ENSGT00940000155454.w.a.b	ENSGT00940000155454.w.a.a
Yellowtail amberjack	MODERN SPECIES	2965	zgc:163014 (ENSSLDG00000020292) #7	tmed8 (ENSSLDG00000020311) #8	NOXRED1 (ENSSLDG00000020324)	ATG2B (ENSSLDG00000020346) #9	gskip (ENSSLDG00000020492) #10	npc2.1 (ENSSLDG00000020547) #11	isca2 (ENSSLDG00000020710) #12	EML5 (ENSSLDG00000020733) #13	ttc8 (ENSSLDG00000020875) #14	ENSSLDG00000020949 #15	ENSSLDG00000020965 ##20	ENSSLDG00000020974 #20	ENSSLDG00000020985 ##20	ENSSLDG00000021010 ##20	NEK9 (ENSSLDG00000021020) #21	ENSSLDG00000021055 #22	ENSSLDG00000021066 #23	ENSSLDG00000021099 #24	JDP2 (ENSSLDG00000021117) #25	FLVCR2 (ENSSLDG00000021129) #26	ERG28 (ENSSLDG00000021171) #28	ENSSLDG00000021195 #29	tgfb3 (ENSSLDG00000021239) #31	IFT43 (ENSSLDG00000021252) #32	GPATCH2L (ENSSLDG00000021264) #33	ESRRB (ENSSLDG00000021283) #34	prox2 (ENSSLDG00000021320) #35	dlst (ENSSLDG00000021344) #36	RPS6KL1 (ENSSLDG00000021428) #37	ENSSLDG00000021445	OLFM4 (ENSSLDG00000021454)
Greater amberjack	MODERN SPECIES	62	tmed8 (ENSSDUG00000002850) #8	NOXRED1 (ENSSDUG00000002862)	ATG2B (ENSSDUG00000002905) #9	npc2.1 (ENSSDUG00000003084) #11	gskip (ENSSDUG00000003108) #10	isca2 (ENSSDUG00000003113) #12	EML5 (ENSSDUG00000003133) #13	ttc8 (ENSSDUG00000003280) #14	ENSSDUG00000003343 #15	ENSSDUG00000003365 ##20	ENSSDUG00000003378 #20	ENSSDUG00000003387 ##20	ENSSDUG00000003403 ##20	ENSSDUG00000003431 ##20	NEK9 (ENSSDUG00000003442) #21	ENSSDUG00000003471 #22	ENSSDUG00000003495 #23	ENSSDUG00000003517	ENSSDUG00000003536 #24	JDP2 (ENSSDUG00000003556) #25	FLVCR2 (ENSSDUG00000003576) #26	ERG28 (ENSSDUG00000003602) #28	ENSSDUG00000003617 #29	tgfb3 (ENSSDUG00000003655) #31	IFT43 (ENSSDUG00000003660) #32	GPATCH2L (ENSSDUG00000003664) #33	ESRRB (ENSSDUG00000003682) #34	prox2 (ENSSDUG00000003704) #35	dlst (ENSSDUG00000003729) #36	RPS6KL1 (ENSSDUG00000003829) #37	ENSSDUG00000003867
Barramundi perch	MODERN SPECIES	110	zgc:163014 (ENSLCAG00010020450) #7	tmed8 (ENSLCAG00010020440) #8	NOXRED1 (ENSLCAG00010020432)	ATG2B (ENSLCAG00010020189) #9	gskip (ENSLCAG00010020154) #10	npc2.1 (ENSLCAG00010020153) #11	isca2 (ENSLCAG00010020151) #12	EML5 (ENSLCAG00010020149) #13	ttc8 (ENSLCAG00010020110) #14	ENSLCAG00010020089 #15	ENSLCAG00010020083 #20	ENSLCAG00010020079 ##20	ENSLCAG00010020076 ##20	NEK9 (ENSLCAG00010020050) #21	ENSLCAG00010020031	ENSLCAG00010020028 #22	ENSLCAG00010019998 #23	ENSLCAG00010019980 #24	JDP2 (ENSLCAG00010019974) #25	FLVCR2 (ENSLCAG00010019962) #26	ERG28 (ENSLCAG00010019950) #28	ENSLCAG00010019793 #29	tgfb3 (ENSLCAG00010019758) #31	IFT43 (ENSLCAG00010019754) #32	GPATCH2L (ENSLCAG00010019744) #33	ESRRB (ENSLCAG00010019726) #34	prox2 (ENSLCAG00010019720) #35	dlst (ENSLCAG00010019684) #36	RPS6KL1 (ENSLCAG00010019672) #37	ENSLCAG00010019662	LRRC74A (ENSLCAG00010019651)
Anabantaria	ANCESTRAL SPECIES	10	ENSGT00530000063651.b #8	ENSGT00950000183044.a.a.b	ENSGT00620000087966.a #9	ENSGT00390000009517 #10	ENSGT00390000006223 #11	ENSGT00390000005700 #12	ENSGT00940000156613 #13	ENSGT00940000156816 #14	ENSGT01030000234575.c.a.a.a.a.b.b.a #15	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.b ##20	ENSGT01030000234575.c.a.a.a.a.b.b.b #20	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.a ##20	ENSGT01030000234575.c.a.a.a.a.b.a.a.b ##20	ENSGT00940000156145 #21	ENSGT00970000197206	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00940000164930.a #24	ENSGT00940000155693.a.b #25	ENSGT01030000234625.B.d.c.a #27	ENSGT01030000234625.B.d.d.b.a #26	ENSGT00390000010925 #28	ENSGT00940000162910 #29	ENSGT00940000155747.g.a #31	ENSGT00390000012060 #32	ENSGT00410000025698.b #33	ENSGT00940000153433.A.f #34	ENSGT00940000154790.b.a.b #35	ENSGT00930000151014.q #36	ENSGT00940000159815 #37	ENSGT00940000155454.w.a.b
Zig-zag eel	MODERN SPECIES	14	NOXRED1 (ENSMAMG00000004903)	ENSMAMG00000004929 #9	gskip (ENSMAMG00000026129) #10	npc2.1 (ENSMAMG00000005085) #11	isca2 (ENSMAMG00000005486) #12	ENSMAMG00000005497 #13	ENSMAMG00000005570 #14	ENSMAMG00000005642 #15	ENSMAMG00000026483 ##20	ENSMAMG00000005684 #20	ENSMAMG00000028014 #16	ENSMAMG00000005693 ##20	ENSMAMG00000005703 ##20	ENSMAMG00000005739 ##20	ENSMAMG00000005772 #21	ACYP1 (ENSMAMG00000025112) #22	ENSMAMG00000005799 #23	ENSMAMG00000005809 #24	JDP2 (ENSMAMG00000005831) #25	FLVCR2 (ENSMAMG00000005852) #27	ENSMAMG00000027957 #26	ERG28 (ENSMAMG00000027458) #28	ENSMAMG00000005926 #29	tgfb3 (ENSMAMG00000005975) #31	IFT43 (ENSMAMG00000005983) #32	GPATCH2L (ENSMAMG00000005997) #33	ESRRB (ENSMAMG00000006014) #34	prox2 (ENSMAMG00000006036) #35	dlst (ENSMAMG00000025145) #36	RPS6KL1 (ENSMAMG00000006095) #37	ENSMAMG00000006115
Anabantoidei	ANCESTRAL SPECIES	9	ENSGT00940000164710 #7	ENSGT00530000063651.b #8	ENSGT00950000183044.a.a.b	ENSGT00620000087966.a #9	ENSGT00390000009517 #10	ENSGT00390000006223 #11	ENSGT00390000005700 #12	ENSGT00940000156613 #13	ENSGT00940000156816 #14	ENSGT01030000234575.c.a.a.a.a.b.b.a #15	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.b ##20	ENSGT01030000234575.c.a.a.a.a.b.b.b #20	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.a ##20	ENSGT00940000156145 #21	ENSGT00970000197206	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00940000164930.a #24	ENSGT00940000155693.a.b #25	ENSGT01030000234625.B.d.c.a #27	ENSGT01030000234625.B.d.d.b.a #26	ENSGT00390000010925 #28	ENSGT00940000162910 #29	ENSGT00940000155747.g.a #31	ENSGT00390000012060 #32	ENSGT00410000025698.b #33	ENSGT00940000153433.A.f #34	ENSGT00940000154790.b.a.b #35	ENSGT00930000151014.q #36	ENSGT00940000159815 #37	ENSGT00940000155454.w.a.b
Climbing perch	MODERN SPECIES	3	ENSATEG00000000615 #9	gskip (ENSATEG00000000818) #10	npc2.1 (ENSATEG00000025317) #11	isca2 (ENSATEG00000000858) #12	ENSATEG00000000968 #13	ENSATEG00000001185 #14	ENSATEG00000001153 #15	ENSATEG00000027730 #20	ENSATEG00000001235 ##20	ENSATEG00000027230 #20	ENSATEG00000001274 ##20	ENSATEG00000001247 #20	ENSATEG00000001315 #21	ENSATEG00000026844	ENSATEG00000001325	ACYP1 (ENSATEG00000025454) #22	ENSATEG00000001351 #23	JDP2 (ENSATEG00000001383) #25	ENSATEG00000001397 #27	FLVCR2 (ENSATEG00000001418) #26	ERG28 (ENSATEG00000001439) #28	ENSATEG00000001482 #29	tgfb3 (ENSATEG00000001502) #31	IFT43 (ENSATEG00000001549) #32	tgfb3 (ENSATEG00000006139) #31	GPATCH2L (ENSATEG00000001600) #33	ESRRB (ENSATEG00000001610) #34	prox2 (ENSATEG00000001654) #35	dlst (ENSATEG00000001662) #36	RPS6KL1 (ENSATEG00000001668) #37	ENSATEG00000029867
Siamese fighting fish	MODERN SPECIES	12	bbof1 (ENSBSLG00000025582)	aldh6a1 (ENSBSLG00000025453)	gstz1 (ENSBSLG00000025003)	tmed8 (ENSBSLG00000024977) #8	ATG2B (ENSBSLG00000024902) #9	gskip (ENSBSLG00000024891) #10	isca2 (ENSBSLG00000024881) #12	npc2.1 (ENSBSLG00000024862) #11	ENSBSLG00000024748 #13	ttc8 (ENSBSLG00000024681) #14	ENSBSLG00000024673 #15	ENSBSLG00000024646 ##20	ENSBSLG00000024629 ##20	ENSBSLG00000024625 #16	NEK9 (ENSBSLG00000024595) #21	ENSBSLG00000024567 #22	ENSBSLG00000024442 #24	JDP2 (ENSBSLG00000024411) #25	FLVCR2 (ENSBSLG00000024264) #26	ERG28 (ENSBSLG00000024257) #28	ENSBSLG00000024202 #29	tgfb3 (ENSBSLG00000024183) #31	IFT43 (ENSBSLG00000024176) #32	ENSBSLG00000024171	ESRRB (ENSBSLG00000024105) #34	prox2 (ENSBSLG00000024093) #35	dlst (ENSBSLG00000024073) #36	RPS6KL1 (ENSBSLG00000024065) #37	ENSBSLG00000023997	ENSBSLG00000023985	ENSBSLG00000023983
Tiger tail seahorse	MODERN SPECIES	491													ENSHCOG00000013815 #20	ENSHCOG00000013821 ##20	NEK9 (ENSHCOG00000013844) #21	ENSHCOG00000013850 #22	ENSHCOG00000013862 #23	ENSHCOG00000013914 #23	ENSHCOG00000013934 #24	JDP2 (ENSHCOG00000013941) #25	ENSHCOG00000013945 #27	FLVCR2 (ENSHCOG00000013964) #27	ERG28 (ENSHCOG00000013983) #28	ENSHCOG00000013993 #29	ENSHCOG00000014009 #30	tgfb3 (ENSHCOG00000014030) #31	IFT43 (ENSHCOG00000014060) #32	thoc7 (ENSHCOG00000014078)	ENSHCOG00000014085	ESRRB (ENSHCOG00000014101) #34	prox2 (ENSHCOG00000014117) #35
Pinecone sodierfish	MODERN SPECIES	14	zgc:163014 (ENSMMDG00005009952) #7	tmed8 (ENSMMDG00005009959) #8	NOXRED1 (ENSMMDG00005009966)	ENSMMDG00005009972	ATG2B (ENSMMDG00005010017) #9	gskip (ENSMMDG00005010925) #10	npc2.1 (ENSMMDG00005010926) #11	isca2 (ENSMMDG00005010927) #12	EML5 (ENSMMDG00005010928) #13	ttc8 (ENSMMDG00005010931) #14	ENSMMDG00005010955 #20	ENSMMDG00005010959 #16	ENSMMDG00005010962 ##20	NEK9 (ENSMMDG00005010969) #21	ENSMMDG00005011011	ENSMMDG00005011012 #22	MLH3 (ENSMMDG00005011014) #23	ENSMMDG00005011024 #24	JDP2 (ENSMMDG00005011026) #25	FLVCR2 (ENSMMDG00005011033) #26	ERG28 (ENSMMDG00005011058) #28	ENSMMDG00005011064 #29	tgfb3 (ENSMMDG00005011068) #31	IFT43 (ENSMMDG00005011069) #32	GPATCH2L (ENSMMDG00005011070) #33	ESRRB (ENSMMDG00005011073) #34	prox2 (ENSMMDG00005011116) #35	dlst (ENSMMDG00005011127) #36	RPS6KL1 (ENSMMDG00005011406) #37	ENSMMDG00005011423	ENSMMDG00005011425
Cod	MODERN SPECIES	18	gstz1 (ENSGMOG00000015791)	zgc:163014 (ENSGMOG00000024580) #7	tmed8 (ENSGMOG00000015776) #8	NOXRED1 (ENSGMOG00000025654)	ENSGMOG00000015676 #9	gskip (ENSGMOG00000015670) #10	npc2.1 (ENSGMOG00000015657) #11	isca2 (ENSGMOG00000015643) #12	ENSGMOG00000015571 #13	ENSGMOG00000015545 #14	ENSGMOG00000024654 #20	ENSGMOG00000026373 #16	ENSGMOG00000023306 #16	NEK9 (ENSGMOG00000015498) #21	ENSGMOG00000026286	ENSGMOG00000024862 #22	ENSGMOG00000023194 #23	ENSGMOG00000027603 #24	JDP2 (ENSGMOG00000015382) #25	FLVCR2 (ENSGMOG00000024949) #27	ERG28 (ENSGMOG00000015353) #28	ENSGMOG00000015266 #29	tgfb3 (ENSGMOG00000015251) #31	IFT43 (ENSGMOG00000015229) #32	ENSGMOG00000032252	GPATCH2L (ENSGMOG00000034598) #33	ESRRB (ENSGMOG00000015180) #34	prox2 (ENSGMOG00000015166) #35	dlst (ENSGMOG00000015133) #36	RPS6KL1 (ENSGMOG00000015101) #37	ENSGMOG00000015004
Protacanthopterygii	ANCESTRAL SPECIES	48	ENSGT01100000263540.A.b.a.a	ENSGT00940000154427.A	ENSGT00940000156110.c.a	ENSGT00390000006580	ENSGT00940000164710 #7	ENSGT00530000063651.b #8	ENSGT00950000183044.a.a.b	ENSGT00620000087966.a #9	ENSGT00390000009517 #10	ENSGT00390000006223 #11	ENSGT00390000005700 #12	ENSGT00940000156613 #13	ENSGT00940000156816 #14	ENSGT00940000156145 #21	ENSGT00940000160947	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00940000164930.a #24	ENSGT00940000155693.a.b #25	ENSGT01030000234625.B.d.c.a #27	ENSGT00390000010925 #28	ENSGT00940000162910 #29	ENSGT00940000155747.g.a #31	ENSGT00390000012060 #32	ENSGT00410000025698.b #33	ENSGT00940000153433.A.f #34	ENSGT00940000154790.b.a.b #35	ENSGT00930000151014.q #36	ENSGT00940000159815 #37	ENSGT00940000155454.w.a	ENSGT00940000155454.w.b
Salmoninae	ANCESTRAL SPECIES	21	ENSGT00510000048375.f	ENSGT00940000159998.f	ENSGT00390000015152.d	ENSGT01100000263540.A.b.a.a.a	ENSGT00940000156110.c.a.d	ENSGT00390000006580.j	ENSGT00940000164710.e #7	ENSGT00530000063651.b.d #8	ENSGT00620000087966.a.b.a #9	ENSGT00390000009517.v #10	ENSGT00390000005700.o.a #12	ENSGT00940000156613.e #13	ENSGT00940000156816.a #14	ENSGT01020000230338.a.b.b.b.d.b	ENSGT00990000209870	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00550000074954.o.b	ENSGT00940000164930.a.a #24	ENSGT00940000155693.a.b.j #25	ENSGT01030000234625.B.d.c.a.f #27	ENSGT00390000010925.f #28	ENSGT00940000162910.p #29	ENSGT00940000155747.g.a.e #31	ENSGT00390000012060.c.a #32	ENSGT00410000025698.b #33	ENSGT00940000153433.A.f.b #34	ENSGT00940000154790.b.a.b.c #35	ENSGT00930000151014.q.e #36	ENSGT00940000159815.c #37	ENSGT00940000155454.w.b
Huchen	MODERN SPECIES	420	ngb (ENSHHUG00000026400)	FAM161B (ENSHHUG00000026394)	coq6 (ENSHHUG00000026312)	ENTPD5 (ENSHHUG00000026295)	aldh6a1 (ENSHHUG00000026286)	gstz1 (ENSHHUG00000026240)	zgc:163014 (ENSHHUG00000026205) #7	tmed8 (ENSHHUG00000026199) #8	ATG2B (ENSHHUG00000026180) #9	ENSHHUG00000026174	isca2 (ENSHHUG00000026165) #12	EML5 (ENSHHUG00000026149) #13	ttc8 (ENSHHUG00000026093) #14	ENSHHUG00000026088	ENSHHUG00000026078	ENSHHUG00000026072 #22	MLH3 (ENSHHUG00000026050) #23	TMED10 (ENSHHUG00000026046)	ENSHHUG00000026045 #24	JDP2 (ENSHHUG00000026044) #25	FLVCR2 (ENSHHUG00000026036) #27	ERG28 (ENSHHUG00000026028) #28	ENSHHUG00000026025 #29	ENSHHUG00000026013	ENSHHUG00000026011
Salmoninae_a	ANCESTRAL SPECIES	36	ENSGT00510000048375.f	ENSGT00940000159998.f	ENSGT00390000015152.d	ENSGT01100000263540.A.b.a.a.a	ENSGT00940000156110.c.a.d	ENSGT00390000006580.j	ENSGT00940000164710.e #7	ENSGT00530000063651.b.d #8	ENSGT00620000087966.a.b.a #9	ENSGT00390000009517.v #10	ENSGT00390000005700.o.a #12	ENSGT00940000156613.e #13	ENSGT00940000156816.a #14	ENSGT01020000230338.a.b.b.b.d.b	ENSGT00990000209870	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00550000074954.o.b	ENSGT00940000164930.a.a #24	ENSGT00940000155693.a.b.j #25	ENSGT01030000234625.B.d.c.a.f #27	ENSGT00390000010925.f #28	ENSGT00940000162910.p #29	ENSGT00940000155747.g.a.e #31	ENSGT00390000012060.c.a #32	ENSGT00410000025698.b #33	ENSGT00940000153433.A.f.b #34	ENSGT00940000154790.b.a.b.c #35	ENSGT00930000151014.q.e #36	ENSGT00940000159815.c #37	ENSGT00940000155454.w.b
Oncorhynchus	ANCESTRAL SPECIES	36	ENSGT00940000159998.f	ENSGT00390000015152.d	ENSGT01100000263540.A.b.a.a.a	ENSGT00940000156110.c.a.d	ENSGT00390000006580.j	ENSGT00940000164710.e #7	ENSGT00530000063651.b.d #8	ENSGT00620000087966.a.b.a #9	ENSGT00390000005700.o.a #12	ENSGT00940000156613.e #13	ENSGT00940000156816.a #14	ENSGT01020000230338.a.b.b.b.d.a	ENSGT01020000230338.a.b.b.b.d.b	ENSGT00970000198028.a	ENSGT00940000160947	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00550000074954.o.b	ENSGT00940000164930.a.a #24	ENSGT00940000155693.a.b.j #25	ENSGT01030000234625.B.d.c.a.f #27	ENSGT00940000162910.p #29	ENSGT01000000219381	ENSGT00940000155747.g.a.e #31	ENSGT00390000012060.c.a #32	ENSGT00410000025698.b #33	ENSGT00940000153433.A.f.b #34	ENSGT00940000154790.b.a.b.c #35	ENSGT00930000151014.q.e #36	ENSGT00940000159815.c #37	ENSGT00940000155454.w.b
Oncorhynchus_a	ANCESTRAL SPECIES	33	ENSGT00940000159998.f	ENSGT00390000015152.d	ENSGT01100000263540.A.b.a.a.a	ENSGT00940000156110.c.a.d	ENSGT00390000006580.j	ENSGT00940000164710.e #7	ENSGT00530000063651.b.d #8	ENSGT00620000087966.a.b.a #9	ENSGT00390000005700.o.a #12	ENSGT00940000156613.e #13	ENSGT00940000156816.a #14	ENSGT01020000230338.a.b.b.b.d.a	ENSGT01020000230338.a.b.b.b.d.b	ENSGT00970000198028.a	ENSGT00940000160947	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00550000074954.o.b	ENSGT00940000164930.a.a #24	ENSGT00940000155693.a.b.j #25	ENSGT01030000234625.B.d.c.a.f #27	ENSGT01000000219381	ENSGT00940000155747.g.a.e #31	ENSGT00390000012060.c.a #32	ENSGT00410000025698.b #33	ENSGT00940000153433.A.f.b #34	ENSGT00940000154790.b.a.b.c #35	ENSGT00930000151014.q.e #36	ENSGT00940000159815.c #37	ENSGT00940000155454.w.b	ENSGT00940000159057
Chinook salmon	MODERN SPECIES	32	FAM161B (ENSOTSG00005005962)	coq6 (ENSOTSG00005003839)	ENTPD5 (ENSOTSG00005002566)	aldh6a1 (ENSOTSG00005002555)	gstz1 (ENSOTSG00005002552)	zgc:163014 (ENSOTSG00005002550) #7	tmed8 (ENSOTSG00005002549) #8	ATG2B (ENSOTSG00005002527) #9	isca2 (ENSOTSG00005002508) #12	EML5 (ENSOTSG00005002496) #13	ttc8 (ENSOTSG00005002378) #14	ENSOTSG00005002352	ENSOTSG00005002350	ENSOTSG00005002345	ENSOTSG00005002340	ENSOTSG00005002338 #22	MLH3 (ENSOTSG00005002258) #23	TMED10 (ENSOTSG00005002120)	ENSOTSG00005002118 #24	JDP2 (ENSOTSG00005002116) #25	FLVCR2 (ENSOTSG00005002113) #27	ENSOTSG00005002110	tgfb3 (ENSOTSG00005002108) #31	IFT43 (ENSOTSG00005002104) #32	ENSOTSG00005002098	GPATCH2L (ENSOTSG00005002096) #33	ESRRB (ENSOTSG00005001745) #34	prox2 (ENSOTSG00005001730) #35	dlst (ENSOTSG00005001317) #36	RPS6KL1 (ENSOTSG00005001308) #37	ENSOTSG00005001307
Coho salmon	MODERN SPECIES	5	FAM161B (ENSOKIG00005007367)	coq6 (ENSOKIG00005007414)	ENTPD5 (ENSOKIG00005008307)	ENSOKIG00005008941	gstz1 (ENSOKIG00005008945)	ENSOKIG00005008955	zgc:163014 (ENSOKIG00005008992) #7	tmed8 (ENSOKIG00005009028) #8	ATG2B (ENSOKIG00005009075) #9	ISCA2 (ENSOKIG00005009261) #12	EML5 (ENSOKIG00005009323) #13	ttc8 (ENSOKIG00005009376) #14	ENSOKIG00005009457	ENSOKIG00005009471	ENSOKIG00005009478	ENSOKIG00005009487 #22	MLH3 (ENSOKIG00005009504) #23	TMED10 (ENSOKIG00005009588)	ENSOKIG00005009625 #24	JDP2 (ENSOKIG00005009628) #25	FLVCR2 (ENSOKIG00005009643) #27	ENSOKIG00005009674	tgfb3 (ENSOKIG00005009688) #31	IFT43 (ENSOKIG00005009701) #32	GPATCH2L (ENSOKIG00005009723) #33	ESRRB (ENSOKIG00005009753) #34	prox2 (ENSOKIG00005009976) #35	dlst (ENSOKIG00005009991) #36	RPS6KL1 (ENSOKIG00005010037) #37	ENSOKIG00005010052	ENSOKIG00005010072
Rainbow trout	MODERN SPECIES	17	coq6 (ENSOMYG00000019280)	ENTPD5 (ENSOMYG00000018985)	aldh6a1 (ENSOMYG00000018937)	gstz1 (ENSOMYG00000037854)	zgc:163014 (ENSOMYG00000037772) #7	tmed8 (ENSOMYG00000037735) #8	ENSOMYG00000037672 #9	ENSOMYG00000037565 #12	ENSOMYG00000036851 #13	ENSOMYG00000036656 #14	ENSOMYG00000061376	ENSOMYG00000036612	ENSOMYG00000036589	ENSOMYG00000036584	ENSOMYG00000036569	ENSOMYG00000051866 #22	ENSOMYG00000036407 #23	tmeda (ENSOMYG00000036499)	ENSOMYG00000068853 #24	JDP2 (ENSOMYG00000036373) #25	FLVCR2 (ENSOMYG00000035816) #27	ENSOMYG00000035729 #29	ENSOMYG00000073372	ENSOMYG00000054625	tgfb3 (ENSOMYG00000035710) #31	IFT43 (ENSOMYG00000035697) #32	GPATCH2L (ENSOMYG00000035677) #33	ESRRB (ENSOMYG00000035608) #34	prox2 (ENSOMYG00000035591) #35	dlst (ENSOMYG00000035571) #36	RPS6KL1 (ENSOMYG00000035555) #37
Salmo	ANCESTRAL SPECIES	11	ENSGT00390000015152.d	ENSGT01100000263540.A.b.a.a.a	ENSGT00940000156110.c.a.d	ENSGT00390000006580.j	ENSGT00940000164710.e #7	ENSGT00530000063651.b.d #8	ENSGT00620000087966.a.b.a #9	ENSGT00390000009517.v #10	ENSGT00990000213299	ENSGT00390000005700.o.a #12	ENSGT00940000156613.e #13	ENSGT00940000156816.a #14	ENSGT01020000230338.a.b.b.b.d.a	ENSGT00970000198028	ENSGT00990000209870	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00550000074954.o.b	ENSGT00940000164930.a.a #24	ENSGT00940000155693.a.b.j #25	ENSGT01030000234625.B.d.c.a.f #27	ENSGT00390000010925.f #28	ENSGT00940000162910.p #29	ENSGT00940000155747.g.a.e #31	ENSGT00390000012060.c.a #32	ENSGT00410000025698.b #33	ENSGT00940000153433.A.f.b #34	ENSGT00940000154790.b.a.b.c #35	ENSGT00930000151014.q.e #36	ENSGT00940000159815.c #37	ENSGT00940000155454.w.b
Atlantic salmon	MODERN SPECIES	28	coq6 (ENSSSAG00000005640)	ENTPD5 (ENSSSAG00000005188)	aldh6a1 (ENSSSAG00000005146)	gstz1 (ENSSSAG00000005138)	zgc:163014 (ENSSSAG00000005118) #7	tmed8 (ENSSSAG00000116858) #8	ENSSSAG00000003147 #9	gskip (ENSSSAG00000002968) #10	ENSSSAG00000002964	isca2 (ENSSSAG00000002913) #12	ENSSSAG00000002521 #13	ENSSSAG00000002637 #14	ENSSSAG00000002240	ENSSSAG00000002188	ENSSSAG00000056119	ENSSSAG00000117697 #22	ENSSSAG00000056104 #23	ENSSSAG00000056092	ENSSSAG00000056089 #24	JDP2 (ENSSSAG00000056082) #25	FLVCR2 (ENSSSAG00000055391) #27	ERG28 (ENSSSAG00000055364) #28	ENSSSAG00000055351 #29	tgfb3 (ENSSSAG00000055340) #31	ift43 (ENSSSAG00000055332) #32	gpatch2l (ENSSSAG00000055320) #33	ESRRB (ENSSSAG00000060549) #34	prox2 (ENSSSAG00000055279) #35	dlst (ENSSSAG00000055262) #36	RPS6KL1 (ENSSSAG00000055254) #37	ENSSSAG00000055246
River trout	MODERN SPECIES	17	ENTPD5 (ENSSTUG00000008477)	aldh6a1 (ENSSTUG00000008658)	gstz1 (ENSSTUG00000008684)	zgc:163014 (ENSSTUG00000008702) #7	tmed8 (ENSSTUG00000008749) #8	ATG2B (ENSSTUG00000008758) #9	gskip (ENSSTUG00000008914) #10	ENSSTUG00000008918	isca2 (ENSSTUG00000008934) #12	EML5 (ENSSTUG00000008974) #13	ttc8 (ENSSTUG00000009051) #14	ENSSTUG00000009278	ENSSTUG00000009300	NEK9 (ENSSTUG00000009309) #21	ENSSTUG00000009343	ENSSTUG00000009354 #22	MLH3 (ENSSTUG00000009363) #23	ENSSTUG00000009410	ENSSTUG00000009451 #24	JDP2 (ENSSTUG00000009656) #25	FLVCR2 (ENSSTUG00000009668) #27	ERG28 (ENSSTUG00000009730) #28	ENSSTUG00000009741	tgfb3 (ENSSTUG00000009751) #31	IFT43 (ENSSTUG00000009766) #32	GPATCH2L (ENSSTUG00000009776) #33	ESRRB (ENSSTUG00000009786) #34	prox2 (ENSSTUG00000009883) #35	dlst (ENSSTUG00000009889) #36	RPS6KL1 (ENSSTUG00000009935) #37	ENSSTUG00000009964
Northern pike	MODERN SPECIES	14	bbof1 (ENSELUG00000007976)	aldh6a1 (ENSELUG00000007951)	gstz1 (ENSELUG00000032439)	zgc:163014 (ENSELUG00000007863) #7	tmed8 (ENSELUG00000007850) #8	NOXRED1 (ENSELUG00000007795)	ATG2B (ENSELUG00000007766) #9	gskip (ENSELUG00000029432) #10	npc2 (ENSELUG00000007713) #11	isca2 (ENSELUG00000007638) #12	EML5 (ENSELUG00000007606) #13	ttc8 (ENSELUG00000007542) #14	ENSELUG00000028501	NEK9 (ENSELUG00000007481) #21	ENSELUG00000007416	ENSELUG00000007437 #22	MLH3 (ENSELUG00000007401) #23	tmed10 (ENSELUG00000032761)	ENSELUG00000007336 #24	JDP2 (ENSELUG00000007321) #25	FLVCR2 (ENSELUG00000007300) #27	ERG28 (ENSELUG00000007282) #28	ENSELUG00000007250 #29	tgfb3 (ENSELUG00000007196) #31	IFT43 (ENSELUG00000007156) #32	ENSELUG00000030364	GPATCH2L (ENSELUG00000000253) #33	ESRRB (ENSELUG00000007077) #34	prox2 (ENSELUG00000007022) #35	dlst (ENSELUG00000006987) #36	RPS6KL1 (ENSELUG00000006942) #37
Otomorpha	ANCESTRAL SPECIES	294														ENSGT00940000156145 #21	ENSGT00940000160947	ENSGT00390000011103.B #22	ENSGT00940000164930.a #24	ENSGT00940000155693.a.b #25	ENSGT01030000234625.B.d.c.a #27	ENSGT00390000010925 #28	ENSGT00940000162910 #29	ENSGT00940000155747.h ##31	ENSGT00940000162939	ENSGT00940000155747.g.a #31	ENSGT00390000012060 #32	ENSGT00410000025698.b #33	ENSGT00940000153433.A.e ##34	ENSGT00940000154790.b.a.b #35	ENSGT00930000151014.q #36	ENSGT00940000159815 #37	ENSGT00940000155454.w.a
Otophysi	ANCESTRAL SPECIES	252														ENSGT00940000156145 #21	ENSGT00940000160947	ENSGT00390000011103.B #22	ENSGT00940000164930.a #24	ENSGT00940000155693.a.b #25	ENSGT01030000234625.B.d.c.a #27	ENSGT00390000010925 #28	ENSGT00940000162910 #29	ENSGT00940000155747.h ##31	ENSGT00940000177781 #30	ENSGT00940000155747.g.a #31	ENSGT00390000012060 #32	ENSGT00410000025698.b #33	ENSGT00940000153433.A.e ##34	ENSGT00940000154790.b.a.b #35	ENSGT00930000151014.q #36	ENSGT00940000159815 #37	ENSGT00940000155454.w.a
Characiphysae	ANCESTRAL SPECIES	38	ENSGT00550000074847	ENSGT00390000006979.b	ENSGT00730000112193	ENSGT00940000155490.b	ENSGT00390000006240	ENSGT00390000011802	ENSGT01080000258187	ENSGT01030000234834	ENSGT00390000014092	ENSGT00390000017610.a	ENSGT00940000156816 #14	ENSGT01020000230338.a.b.b.b	ENSGT00390000018386	ENSGT00940000156145 #21	ENSGT00940000160947	ENSGT00390000011103.B #22	ENSGT00940000164930.a #24	ENSGT00940000155693.a.b #25	ENSGT01030000234625.B.d.c.a #27	ENSGT00390000010925 #28	ENSGT00940000162910 #29	ENSGT00940000177781 #30	ENSGT00940000155747.g.a #31	ENSGT00390000012060 #32	ENSGT00410000025698.b #33	ENSGT00940000153433.A.e ##34	ENSGT00940000154790.b.a.b #35	ENSGT00930000151014.q #36	ENSGT00940000159815 #37	ENSGT00940000155454.w.a	ENSGT00940000155454.w.b
Characiphysae_b	ANCESTRAL SPECIES	39	ENSGT00550000074847	ENSGT00390000006979.b	ENSGT00730000112193	ENSGT00940000155490.b	ENSGT00390000006240	ENSGT00390000011802	ENSGT01080000258187	ENSGT01030000234834	ENSGT00390000014092	ENSGT00390000017610.a	ENSGT00940000156816 #14	ENSGT01020000230338.a.b.b.b	ENSGT00390000018386	ENSGT00940000156145 #21	ENSGT00940000160947	ENSGT00390000011103.B #22	ENSGT00940000164930.a #24	ENSGT00940000155693.a.b #25	ENSGT01030000234625.B.d.c.a #27	ENSGT00390000010925 #28	ENSGT00940000162910 #29	ENSGT00940000177781 #30	ENSGT00940000155747.g.a #31	ENSGT00390000012060 #32	ENSGT00410000025698.b #33	ENSGT00940000153433.A.e ##34	ENSGT00940000154790.b.a.b #35	ENSGT00930000151014.q #36	ENSGT00940000159815 #37	ENSGT00940000155454.w.a	ENSGT00940000155454.w.b
Characoidei	ANCESTRAL SPECIES	41	ENSGT00550000074847	ENSGT00390000006979.b	ENSGT00730000112193	ENSGT00940000155490.b	ENSGT00390000006240	ENSGT00390000011802	ENSGT01080000258187	ENSGT01030000234834	ENSGT00390000014092	ENSGT00390000017610.a	ENSGT00940000156816 #14	ENSGT01020000230338.a.b.b.b	ENSGT00390000018386	ENSGT00940000156145 #21	ENSGT00940000160947	ENSGT00390000011103.B #22	ENSGT00940000164930.a #24	ENSGT00940000155693.a.b #25	ENSGT01030000234625.B.d.c.a #27	ENSGT00390000010925 #28	ENSGT00940000162910 #29	ENSGT00940000155747.g.a #31	ENSGT00390000012060 #32	ENSGT00410000025698.b #33	ENSGT00940000153433.A.e ##34	ENSGT00940000154790.b.a.b #35	ENSGT00930000151014.q #36	ENSGT00940000159815 #37	ENSGT00940000155454.w.a	ENSGT00940000155454.w.b	ENSGT00940000154297.A.g.a
Mexicana tetra	MODERN SPECIES	24	atxn3 (ENSAMXG00000035805)	SERPINA10 (ENSAMXG00000036511)	DDX24 (ENSAMXG00000014635)	OTUB2 (ENSAMXG00000014624)	ENSAMXG00000032373	asb2b (ENSAMXG00000014614)	PRIMA1 (ENSAMXG00000033227)	UNC79 (ENSAMXG00000014598)	BTBD7 (ENSAMXG00000014584)	UBR7 (ENSAMXG00000014579)	ttc8 (ENSAMXG00000014575) #14	ENSAMXG00000014568	ndc80 (ENSAMXG00000014557)	NEK9 (ENSAMXG00000014545) #21	ENSAMXG00000040113	ENSAMXG00000014521 #22	ENSAMXG00000014513 #24	JDP2 (ENSAMXG00000034514) #25	FLVCR2 (ENSAMXG00000014488) #26	ERG28 (ENSAMXG00000014479) #28	ENSAMXG00000014451 #29	tgfb3 (ENSAMXG00000014435) #31	IFT43 (ENSAMXG00000014420) #32	GPATCH2L (ENSAMXG00000014403) #33	esrrb (ENSAMXG00000034832) ##34	prox2 (ENSAMXG00000014376) #35	dlst (ENSAMXG00000014365) #36	RPS6KL1 (ENSAMXG00000014346) #37	ENSAMXG00000014329	ENSAMXG00000035002	ENSAMXG00000014315
Red-bellied piranha	MODERN SPECIES	16	atxn3 (ENSPNAG00000008945)	SERPINA10 (ENSPNAG00000001266)	DDX24 (ENSPNAG00000008956)	OTUB2 (ENSPNAG00000008973)	asb2b (ENSPNAG00000008991)	PRIMA1 (ENSPNAG00000008997)	UNC79 (ENSPNAG00000009251)	ENSPNAG00000009291	BTBD7 (ENSPNAG00000009341)	UBR7 (ENSPNAG00000001310)	ttc8 (ENSPNAG00000009394) #14	ENSPNAG00000009421	ndc80 (ENSPNAG00000009495)	NEK9 (ENSPNAG00000009538) #21	ENSPNAG00000009556	ENSPNAG00000009582 #22	ENSPNAG00000009597 #24	JDP2 (ENSPNAG00000009605) #25	FLVCR2 (ENSPNAG00000009615) #27	ERG28 (ENSPNAG00000009627) #28	ENSPNAG00000009662 #29	tgfb3 (ENSPNAG00000001327) #31	IFT43 (ENSPNAG00000009704) #32	GPATCH2L (ENSPNAG00000009720) #33	esrrb (ENSPNAG00000006181) ##34	dlst (ENSPNAG00000009820) #36	ENSPNAG00000001345 #37	prox2 (ENSPNAG00000009888) #35	CCR6 (ENSPNAG00000009905)	ENSPNAG00000006678	ENSPNAG00000001354
Electric eel	MODERN SPECIES	468															ENSEEEG00000020709	ENSEEEG00000020710 #22	ENSEEEG00000020711	ENSEEEG00000020712 #24	JDP2 (ENSEEEG00000020713) #25	FLVCR2 (ENSEEEG00000020716) #27	ERG28 (ENSEEEG00000020760) #28	ENSEEEG00000020762 #29	ENSEEEG00000020763 #30	tgfb3 (ENSEEEG00000020765) #31	IFT43 (ENSEEEG00000020767) #32	GPATCH2L (ENSEEEG00000020769) #33	esrrb (ENSEEEG00000020776) ##34	prox2 (ENSEEEG00000020846) #35	dlst (ENSEEEG00000020867) #36
Channel catfish	MODERN SPECIES	28	atxn3 (ENSIPUG00000006959)	serpina10 (ENSIPUG00000006996)	ddx24 (ENSIPUG00000007005)	otub2 (ENSIPUG00000007042)	asb2b (ENSIPUG00000007072)	ENSIPUG00000007096	PRIMA1 (ENSIPUG00000007111)	UNC79 (ENSIPUG00000007129)	BTBD7 (ENSIPUG00000007221)	UBR7 (ENSIPUG00000007267)	ttc8 (ENSIPUG00000007300) #14	Clec4e (ENSIPUG00000007357)	ENSIPUG00000007371	ndc80 (ENSIPUG00000007384)	nek9 (ENSIPUG00000007451) #21	acyp1 (ENSIPUG00000007512) #22	fos (ENSIPUG00000007522) #24	jdp2 (ENSIPUG00000007544) #25	flvcr2 (ENSIPUG00000007581) #27	ERG28 (ENSIPUG00000007591) #28	ttll5 (ENSIPUG00000007622) #29	tgfb3 (ENSIPUG00000007701) #31	ift43 (ENSIPUG00000007710) #32	gpatch2l (ENSIPUG00000007721) #33	esrrb (ENSIPUG00000007762) ##34	prox2 (ENSIPUG00000007832) #35	dlst (ENSIPUG00000007845) #36	rps6kl1 (ENSIPUG00000007905) #37	ENSIPUG00000007940	ENSIPUG00000008106	LRRC74A (ENSIPUG00000008118)
Cyprinoidei	ANCESTRAL SPECIES	176															ENSGT00940000160947	ENSGT00390000011103.B #22	ENSGT00940000164930.a #24	ENSGT00940000155693.a.b #25	ENSGT01030000234625.B.d.c.a #27	ENSGT00390000010925 #28	ENSGT00940000162910 #29	ENSGT00940000155747.g.a #31	ENSGT00390000012060 #32	ENSGT00940000153433.A.e ##34	ENSGT00940000154790.b.a.b #35	ENSGT00930000151014.q #36	ENSGT00940000159815 #37	ENSGT00940000155454.w.a	ENSGT00940000155454.w.b	ENSGT00940000154297.A.g.a	ENSGT00940000159057
Cyprininae	ANCESTRAL SPECIES	352	ENSGT00390000008195	ENSGT00940000158751	ENSGT00940000156891.a.a	ENSGT00940000156668	ENSGT01090000260005.a.b.a.b.a.b.i.b	ENSGT01090000260005.a.b.a.b.a.b.i.a	ENSGT00940000156499.a.a	ENSGT00390000013444.a.a.x	ENSGT00390000013444.a.a.w	ENSGT00940000156065.a	ENSGT00940000159502.d	ENSGT00940000155086.A.f	ENSGT00940000155086.A.e.a	ENSGT00940000153511.b.q.a	ENSGT00940000160947	ENSGT00390000011103.B #22	ENSGT00940000164930.a #24	ENSGT00940000155693.a.b #25	ENSGT01030000234625.B.d.c.a.b #27	ENSGT00390000010925 #28	ENSGT00940000162910 #29	ENSGT00940000155747.g.a.d #31	ENSGT00390000012060 #32	ENSGT00940000153433.A.e.a.b ##34	ENSGT00940000154790.b.a.b.f #35	ENSGT00930000151014.q.h #36	ENSGT00940000159057.j	ENSGT00390000012703.b
Goldfish	MODERN SPECIES	8	eipr1 (ENSCARG00000006219)	ENSCARG00000006208	trappc12 (ENSCARG00000004849)	adi1 (ENSCARG00000004773)	psen1 (ENSCARG00000004748)	ENSCARG00000004741	PAPLN (ENSCARG00000004677)	aqr (ENSCARG00000003972)	ENSCARG00000003736	FERMT2 (ENSCARG00000003543)	DDHD1 (ENSCARG00000003493)	bmp4 (ENSCARG00000003482)	OTOF (ENSCARG00000003230)	syncripl (ENSCARG00000003079)	ENSCARG00000003052	ENSCARG00000003051 #22	ENSCARG00000003046 #24	JDP2 (ENSCARG00000003043) #25	ENSCARG00000003042	FLVCR2 (ENSCARG00000003002) #27	ERG28 (ENSCARG00000002977) #28	ENSCARG00000002968	ENSCARG00000002959 #30	tgfb3 (ENSCARG00000002952) #31	IFT43 (ENSCARG00000002944) #32	ENSCARG00000002940	esrrb (ENSCARG00000002898) ##34	prox2 (ENSCARG00000002885) #35	dlst (ENSCARG00000002601) #36	VASH1 (ENSCARG00000002567)	ENSCARG00000002558
Cyprininae_a	ANCESTRAL SPECIES	369		ENSGT00940000165425.a.b.b.b.a	ENSGT00940000156668	ENSGT01090000260005.a.b.a.b.a.b.i.a	ENSGT00940000156499.a.a	ENSGT00390000013444.a.a.x	ENSGT00390000013444.a.a.w	ENSGT00940000156065.a	ENSGT00940000159502.d	ENSGT00940000155086.A.e.b	ENSGT00940000153511.b.q.b	ENSGT00900000143321	ENSGT00940000155086.A.e.a	ENSGT00940000153511.b.q.a	ENSGT00940000160947	ENSGT00390000011103.B #22	ENSGT00940000164930.a.d #24	ENSGT00940000155693.a.b #25	ENSGT01030000234625.B.d.c.a.b #27	ENSGT00390000010925 #28	ENSGT00940000162910 #29	ENSGT00940000155747.g.a.d #31	ENSGT00390000012060 #32	ENSGT00940000153433.A.e.a.b ##34	ENSGT00940000154790.b.a.b.f #35	ENSGT00930000151014.q.h #36	ENSGT00940000159057.j	ENSGT00390000012703.b
Common carp reference	MODERN SPECIES	30	trappc12 (ENSCCRG00000025338)	adi1 (ENSCCRG00000025334)	psen1 (ENSCCRG00000075467)	ENSCCRG00000051900	ENSCCRG00000074153	ENSCCRG00000012861	aqr (ENSCCRG00000034110)	ENSCCRG00000066002	stxbp6 (ENSCCRG00000015301)	ENSCCRG00000064589	ENSCCRG00000082438	ENSCCRG00000037086	ENSCCRG00000075948	syncripl (ENSCCRG00000041944)	ENSCCRG00000078494	ENSCCRG00000053187 #22	ENSCCRG00000059288 #24	JDP2 (ENSCCRG00000061353) #25	FLVCR2 (ENSCCRG00000038972) #27	ERG28 (ENSCCRG00000038975) #28	ENSCCRG00000038024 #29	tgfb3 (ENSCCRG00000002876) #31	ENSCCRG00000079793	IFT43 (ENSCCRG00000076096) #32	esrrb (ENSCCRG00000072814) ##34	prox2 (ENSCCRG00000081041) #35	dlst (ENSCCRG00000070142) #36	ENSCCRG00000081462 #37	ENSCCRG00000074742	ENSCCRG00000072981 #37	ENSCCRG00000063604
Golden-line barbel	MODERN SPECIES	119	zgc:113142 (ENSSGRG00000043171)	PXDN (ENSSGRG00000043175)	MYT1L (ENSSGRG00000043184)	eipr1 (ENSSGRG00000043195)	trappc12 (ENSSGRG00000043239)	psen1 (ENSSGRG00000043391)	ENSSGRG00000043395	stxbp6 (ENSSGRG00000043397)	fermt2 (ENSSGRG00000043420)	DDHD1 (ENSSGRG00000045041)	bmp4 (ENSSGRG00000045055)	OTOF (ENSSGRG00000045056)	syncripl (ENSSGRG00000045057)	ENSSGRG00000045058	ENSSGRG00000045059	ENSSGRG00000045060 #22	ENSSGRG00000045061 #24	JDP2 (ENSSGRG00000045062) #25	FLVCR2 (ENSSGRG00000045064) #27	ENSSGRG00000045071 #29	TGFB3 (ENSSGRG00000045073) ##31
Clupeiformes	ANCESTRAL SPECIES	278													ENSGT01020000230338.a.b.b.b	ENSGT00940000156145 #21	ENSGT00940000160947	ENSGT00390000011103.B #22	ENSGT00940000164930.a #24	ENSGT00940000155693.a.b #25	ENSGT01030000234625.B.d.c.a #27	ENSGT00390000010925 #28	ENSGT00940000162910 #29	ENSGT00940000162939	ENSGT00940000155747.g.a #31	ENSGT00390000012060 #32	ENSGT00410000025698.b #33	ENSGT00940000153433.A.e ##34	ENSGT00940000154790.b.a.b #35	ENSGT00940000159815 #37	ENSGT00940000159057	ENSGT00390000012703.b	ENSGT00940000153117.B
Denticle herring	DUPLICATION
Denticle herring	MODERN SPECIES	201											ENSDCDG00000007138	ENSDCDG00000007114	ENSDCDG00000007097	NEK9 (ENSDCDG00000006991) #21	ENSDCDG00000006919	ENSDCDG00000006908 #22	ENSDCDG00000006853	ENSDCDG00000006458 #24	ENSDCDG00000006284 #25
Denticle herring	MODERN SPECIES		tdrd9 (ENSDCDG00000002697)	ENSDCDG00000002691	ENSDCDG00000002680	ENSDCDG00000002658	dapp1 (ENSDCDG00000002646)	ENSDCDG00000002628	rrh (ENSDCDG00000002620)	enpep (ENSDCDG00000002498)	lrit3b (ENSDCDG00000002470)	ENSDCDG00000002453	ENSDCDG00000002449	ENSDCDG00000002444	ENSDCDG00000002407	NEK9 (ENSDCDG00000002377) #21	ENSDCDG00000002372	ENSDCDG00000002370 #22	TMED10 (ENSDCDG00000002366)	ENSDCDG00000002363	JDP2 (ENSDCDG00000002360) #25	FLVCR2 (ENSDCDG00000002340) #27	ERG28 (ENSDCDG00000002332) #28	ENSDCDG00000002330 #29	tgfb3 (ENSDCDG00000002323) #31	IFT43 (ENSDCDG00000002321) #32	ENSDCDG00000002318 #33	prox2 (ENSDCDG00000002316) #35	RPS6KL1 (ENSDCDG00000002313) #37	ANGEL1 (ENSDCDG00000002308)	VASH1 (ENSDCDG00000002307)	fcf1 (ENSDCDG00000002304)	AREL1 (ENSDCDG00000002300)
Atlantic herring	MODERN SPECIES	5	trappc12 (ENSCHAG00000021281)	eipr1 (ENSCHAG00000021098)	MYT1L (ENSCHAG00000020739)	PXDN (ENSCHAG00000020600)	CCR6 (ENSCHAG00000020590)	PDIA6 (ENSCHAG00000020474)	ENSCHAG00000020436	AREL1 (ENSCHAG00000020367)	LTBP2 (ENSCHAG00000020019)	pold3 (ENSCHAG00000019995)	ktn1 (ENSCHAG00000019797)	MSH4 (ENSCHAG00000019692)	NEK9 (ENSCHAG00000019580) #21	ENSCHAG00000019571	ENSCHAG00000019557	ENSCHAG00000019548 #22	ENSCHAG00000019541 #24	ENSCHAG00000019518 #25	ENSCHAG00000019487	CLIP4 (ENSCHAG00000019428)	ENSCHAG00000019426	ALK (ENSCHAG00000019414)	slc39a9 (ENSCHAG00000019379)	PLEKHD1 (ENSCHAG00000019213)	ENSCHAG00000019203	smoc1 (ENSCHAG00000019185)	ENSCHAG00000019162	tmem177 (ENSCHAG00000019159)	ENSCHAG00000019127	ENSCHAG00000019113	ENSCHAG00000019080
Osteoglossiformes	ANCESTRAL SPECIES	55	ENSGT00390000010397.a.b	ENSGT00940000160983	ENSGT00950000182988.a.b.b.b.p	ENSGT00940000156128.b.c	ENSGT00940000154895.a.b.d	ENSGT00530000063484.b.a	ENSGT00940000159450	ENSGT00940000159971.f	ENSGT00940000160039.l	ENSGT00390000010687.a.b	ENSGT00940000157557.c	ENSGT00940000154359.x	ENSGT00940000162696.c.b	ENSGT00940000160285.ab	ENSGT00940000161394	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00550000074908	ENSGT00550000074954.r.a	ENSGT00940000159276.a	ENSGT00940000164930.c #24	ENSGT00940000155693.a.a ##25	ENSGT01030000234625.B.d.c.c #27	ENSGT00390000010925 #28	ENSGT00940000162910 #29	ENSGT00940000162939	ENSGT00940000155747.g.a #31	ENSGT00390000012060 #32	ENSGT00410000025698.b #33	ENSGT00940000153433.A.f #34	ENSGT00940000154790.b.a.b #35
P. kingsleyae	MODERN SPECIES	39	AMMECR1 (ENSPKIG00000017331)	CHRDL1 (ENSPKIG00000017405)	PAK3 (ENSPKIG00000017573)	CAPN6 (ENSPKIG00000017646)	ENSPKIG00000017693	ENSPKIG00000017731	SLC16A2 (ENSPKIG00000017749)	ENSPKIG00000017783	ENSPKIG00000017836	zgc:163098 (ENSPKIG00000017920)	WDR44 (ENSPKIG00000018027)	ENSPKIG00000018160	ENSPKIG00000018231	LTBP3 (ENSPKIG00000018275)	ENSPKIG00000018372	ENSPKIG00000018409 #22	SPTBN2 (ENSPKIG00000018604)	ENSPKIG00000018911	ENSPKIG00000018930	pola2 (ENSPKIG00000019005)	cdc42ep2 (ENSPKIG00000019081)	DPF2 (ENSPKIG00000019113)	CHRM1 (ENSPKIG00000019172)	ENSPKIG00000019190	ENSPKIG00000019224	ENSPKIG00000019257	zdhhc24 (ENSPKIG00000019276)	foxa (ENSPKIG00000019301)	rnaseh2c (ENSPKIG00000019331)	kat5b (ENSPKIG00000019383)	ENSPKIG00000019454
Asian bonytongue	DUPLICATION
Asian bonytongue	MODERN SPECIES	4	CHRDL1 (ENSSFOG00015004712)	PAK3 (ENSSFOG00015004773)	CAPN6 (ENSSFOG00015031003)	ENSSFOG00015004818	ENSSFOG00015004841	SLC16A2 (ENSSFOG00015004857)	il13ra2 (ENSSFOG00015004872)	LRCH2 (ENSSFOG00015031284)	zgc:163098 (ENSSFOG00015004962)	WDR44 (ENSSFOG00015005037)	ENSSFOG00015005047	ENSSFOG00015029008	LTBP3 (ENSSFOG00015005092)	ENSSFOG00015005332	ENSSFOG00015026267	ENSSFOG00015005339 #22	SPTBN2 (ENSSFOG00015005369)	ENSSFOG00015005474	ENSSFOG00015005551	pola2 (ENSSFOG00015005566)	cdc42ep2 (ENSSFOG00015005588)	dpf2l (ENSSFOG00015005603)	ENSSFOG00015005656	ENSSFOG00015026655	SIPA1 (ENSSFOG00015005691)	ENSSFOG00015030916	zdhhc24 (ENSSFOG00015026050)	ENSSFOG00015028298	rnaseh2c (ENSSFOG00015005760)	kat5b (ENSSFOG00015005779)	ENSSFOG00015005814
Asian bonytongue	MODERN SPECIES	6	aldh6a1 (ENSSFOG00015016748)	gstz1 (ENSSFOG00015016705)	zgc:163014 (ENSSFOG00015016668) #7	tmed8 (ENSSFOG00015026633) #8	ENSSFOG00015031275	ATG2B (ENSSFOG00015016533) #9	gskip (ENSSFOG00015032067) #10	npc2.1 (ENSSFOG00015016517) #11	isca2 (ENSSFOG00015025293) #12	EML5 (ENSSFOG00015016421) #13	ttc8 (ENSSFOG00015016384) #14	ENSSFOG00015024647	ENSSFOG00015016354 #14	NEK9 (ENSSFOG00015023989) #21	ENSSFOG00015023986	ENSSFOG00015023983 #22	MLH3 (ENSSFOG00015023979) #23	eif2b2 (ENSSFOG00015023976)	tmed10 (ENSSFOG00015033273)	fosab (ENSSFOG00015023971)	ENSSFOG00015023968 #24	ENSSFOG00015024679 ##25	batf (ENSSFOG00015030749)	FLVCR2 (ENSSFOG00015008109) #27	ERG28 (ENSSFOG00015032324) #28	ENSSFOG00015027867 #29	tgfb3 (ENSSFOG00015031700) #31	IFT43 (ENSSFOG00015023942) #32	GPATCH2L (ENSSFOG00015023938) #33	ESRRB (ENSSFOG00015023935) #34	prox2 (ENSSFOG00015023932) #35
Reedfish	DUPLICATION
Reedfish	MODERN SPECIES		ENSECRG00000000827	LTBP3 (ENSECRG00000000894)	ENSECRG00000000987	ENSECRG00000001001	ENSECRG00000001019	znrd2 (ENSECRG00000001038)	FAM89B (ENSECRG00000001059)	ENSECRG00000001131	ENSECRG00000001264	SIPA1 (ENSECRG00000001315)	ENSECRG00000001383	ENSECRG00000001406	dpf2 (ENSECRG00000001454)	cdc42ep2 (ENSECRG00000001511)	pola2 (ENSECRG00000001528)	ENSECRG00000001558 #22	ENSECRG00000001595	ENSECRG00000001689	plcb3 (ENSECRG00000001823)	ppp1r14ba (ENSECRG00000001899)	fkbp2 (ENSECRG00000001913)	ENSECRG00000001977	ENSECRG00000002087	ENSECRG00000002099	ENSECRG00000002109	ENSECRG00000002122	PC (ENSECRG00000002143)	ctsf (ENSECRG00000002183)	banf1 (ENSECRG00000002202)	eif1ad (ENSECRG00000002218)	sart1 (ENSECRG00000002228)
Reedfish	MODERN SPECIES	7	ENSECRG00000012191	casq1b (ENSECRG00000012209)	PEA15 (ENSECRG00000012229)	BDKRB2 (ENSECRG00000012246)	ENSECRG00000012260	ENSECRG00000012273	GPR65 (ENSECRG00000012291)	kcnk10a (ENSECRG00000012303)	ENSECRG00000012323	PTPN21 (ENSECRG00000012351)	ZC3H14 (ENSECRG00000012378)	EML5 (ENSECRG00000012423) #13	ttc8 (ENSECRG00000012513) #14	NEK9 (ENSECRG00000012553) #21	ENSECRG00000012617	ENSECRG00000012659 #22	ENSECRG00000012679	MLH3 (ENSECRG00000012707) #23	eif2b2 (ENSECRG00000012733)	fermt2 (ENSECRG00000012773)	ddhd1b (ENSECRG00000012829)	bmp4 (ENSECRG00000012847)	cgrrf1 (ENSECRG00000012864)	CGRRF1 (ENSECRG00000012914)	SAMD4A (ENSECRG00000013074)	gch1 (ENSECRG00000013129)	wdhd1 (ENSECRG00000013162)	socs4 (ENSECRG00000013211)	ENSECRG00000013232	gnpnat1 (ENSECRG00000013253)	styx (ENSECRG00000013277)