Euteleostomi	ANCESTRAL SPECIES	578													ENSGT00550000074954	ENSGT00940000156145 #21	ENSGT00940000160947	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00550000074908
Actinopterygii	ANCESTRAL SPECIES	720																ENSGT00390000011103.B #22	ENSGT00940000158847.d	ENSGT00940000164891
Neopterygii	ANCESTRAL SPECIES	568																ENSGT00390000011103.B #22	ENSGT00940000158847.d	ENSGT00940000164891
Osteoglossocephalai	ANCESTRAL SPECIES	13	ENSGT00940000154427.A	ENSGT00940000156110.c.a	ENSGT00390000006580	ENSGT00940000164710	ENSGT00530000063651.b #7	ENSGT00950000183044.a.a.b	ENSGT00620000087966.a #9	ENSGT00390000009517 #10	ENSGT00390000006223 #11	ENSGT00390000005700 #12	ENSGT00940000156613 #13	ENSGT00940000156816 #14	ENSGT01020000230338.a.b.b.b	ENSGT00940000156145 #21	ENSGT00940000160947	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00550000074908	ENSGT00550000074954	ENSGT00940000159276	ENSGT00940000155693.b ##25	ENSGT00940000159745	ENSGT01030000234625.B.d.c #26	ENSGT00390000010925 #28	ENSGT00940000162910 #29	ENSGT00940000162939	ENSGT00940000155747.g.a #31	ENSGT00390000012060 #32	ENSGT00410000025698.b #33	ENSGT00940000153433.A.f #34	ENSGT00940000154790.b.a.b #35
Clupeocephala	ANCESTRAL SPECIES	17	ENSGT00940000154427.A	ENSGT00940000156110.c.a	ENSGT00390000006580	ENSGT00940000164710	ENSGT00530000063651.b #7	ENSGT00950000183044.a.a.b	ENSGT00620000087966.a #9	ENSGT00390000009517 #10	ENSGT00390000006223 #11	ENSGT00390000005700 #12	ENSGT00940000156613 #13	ENSGT00940000156816 #14	ENSGT01020000230338.a.b.b.b	ENSGT00940000156145 #21	ENSGT00940000160947	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00940000164930.a #24	ENSGT00940000155693.a.b #25	ENSGT01030000234625.B.d.c.a #26	ENSGT00390000010925 #28	ENSGT00940000162910 #29	ENSGT00940000162939	ENSGT00940000155747.g.a #31	ENSGT00390000012060 #32	ENSGT00410000025698.b #33	ENSGT00940000153433.A.f #34	ENSGT00940000154790.b.a.b #35	ENSGT00930000151014.q #36	ENSGT00940000159815 #37	ENSGT00940000155454.w.a
Euteleosteomorpha	ANCESTRAL SPECIES	26	ENSGT00940000154427.A	ENSGT00940000156110.c.a	ENSGT00390000006580	ENSGT00940000164710	ENSGT00530000063651.b #7	ENSGT00950000183044.a.a.b	ENSGT00620000087966.a #9	ENSGT00390000009517 #10	ENSGT00390000006223 #11	ENSGT00390000005700 #12	ENSGT00940000156613 #13	ENSGT00940000156816 #14	ENSGT01020000230338.a.b.b.b.d	ENSGT00940000156145 #21	ENSGT00940000160947	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00940000164930.a #24	ENSGT00940000155693.a.b #25	ENSGT01030000234625.B.d.c.a #26	ENSGT00390000010925 #28	ENSGT00940000162910 #29	ENSGT00940000162939	ENSGT00940000155747.g.a #31	ENSGT00390000012060 #32	ENSGT00410000025698.b #33	ENSGT00940000153433.A.f #34	ENSGT00940000154790.b.a.b #35	ENSGT00930000151014.q #36	ENSGT00940000159815 #37	ENSGT00940000155454.w.a
Acanthomorphata	ANCESTRAL SPECIES	7	ENSGT00940000156110.c.a	ENSGT00390000006580	ENSGT00940000164710	ENSGT00530000063651.b #7	ENSGT00950000183044.a.a.b	ENSGT00620000087966.a #9	ENSGT00390000009517 #10	ENSGT00390000006223 #11	ENSGT00390000005700 #12	ENSGT00940000156613 #13	ENSGT00940000156816 #14	ENSGT01030000234575.c.a.a.a.a.b.b #19	ENSGT00940000174567	ENSGT00940000156145 #21	ENSGT00940000160947	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00940000164930.a #24	ENSGT00940000155693.a.b #25	ENSGT01030000234625.B.d.c.a #26	ENSGT01030000234625.B.d.d.b.a ##26	ENSGT00390000010925 #28	ENSGT00940000162910 #29	ENSGT00940000162939	ENSGT00940000155747.g.a #31	ENSGT00390000012060 #32	ENSGT00410000025698.b #33	ENSGT00940000153433.A.f #34	ENSGT00940000154790.b.a.b #35	ENSGT00930000151014.q #36	ENSGT00940000159815 #37
Euacanthomorphacea	ANCESTRAL SPECIES	11	ENSGT00390000006580	ENSGT00940000164710	ENSGT00530000063651.b #7	ENSGT00950000183044.a.a.b	ENSGT00620000087966.a #9	ENSGT00390000009517 #10	ENSGT00390000006223 #11	ENSGT00390000005700 #12	ENSGT00940000156613 #13	ENSGT00940000156816 #14	ENSGT01030000234575.c.a.a.a.a.b.b #19	ENSGT00940000174567	ENSGT01030000234575.c.a.a.a.a.b.a.a.b ##20	ENSGT00940000156145 #21	ENSGT00940000160947	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00940000164930.a #24	ENSGT00940000155693.a.b #25	ENSGT01030000234625.B.d.c.a #26	ENSGT01030000234625.B.d.d.b.a ##26	ENSGT00390000010925 #28	ENSGT00940000162910 #29	ENSGT00940000162939	ENSGT00940000155747.g.a #31	ENSGT00390000012060 #32	ENSGT00410000025698.b #33	ENSGT00940000153433.A.f #34	ENSGT00940000154790.b.a.b #35	ENSGT00930000151014.q #36	ENSGT00940000159815 #37
Percomorphaceae	ANCESTRAL SPECIES	13	ENSGT00940000156110.c.a	ENSGT00390000006580	ENSGT00940000164710	ENSGT00530000063651.b #7	ENSGT00950000183044.a.a.b	ENSGT00620000087966.a #9	ENSGT00390000009517 #10	ENSGT00390000006223 #11	ENSGT00390000005700 #12	ENSGT00940000156613 #13	ENSGT00940000156816 #14	ENSGT01030000234575.c.a.a.a.a.b.b.a #15	ENSGT00940000174567	ENSGT01030000234575.c.a.a.a.a.b.a.a.b ##20	ENSGT00940000156145 #21	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00940000164930.a #24	ENSGT00940000155693.a.b #25	ENSGT01030000234625.B.d.c.a #26	ENSGT01030000234625.B.d.d.b.a ##26	ENSGT00390000010925 #28	ENSGT00940000162910 #29	ENSGT00940000162939	ENSGT00940000155747.g.a #31	ENSGT00390000012060 #32	ENSGT00410000025698.b #33	ENSGT00940000153433.A.f #34	ENSGT00940000154790.b.a.b #35	ENSGT00930000151014.q #36	ENSGT00940000159815 #37
Percomorphaceae_B	ANCESTRAL SPECIES	11	ENSGT00940000164710	ENSGT00530000063651.b #7	ENSGT00950000183044.a.a.b	ENSGT00620000087966.a #9	ENSGT00390000009517 #10	ENSGT00390000006223 #11	ENSGT00390000005700 #12	ENSGT00940000156613 #13	ENSGT00940000156816 #14	ENSGT01030000234575.c.a.a.a.a.b.b.a #15	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.b #16	ENSGT01030000234575.c.a.a.a.a.b.b.b #19	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.a #20	ENSGT01030000234575.c.a.a.a.a.b.a.a.b ##20	ENSGT00940000156145 #21	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00940000164930.a #24	ENSGT00940000155693.a.b #25	ENSGT01030000234625.B.d.c.a #26	ENSGT01030000234625.B.d.d.b.a ##26	ENSGT00390000010925 #28	ENSGT00940000162910 #29	ENSGT00940000162939	ENSGT00940000155747.g.a #31	ENSGT00390000012060 #32	ENSGT00410000025698.b #33	ENSGT00940000153433.A.f #34	ENSGT00940000154790.b.a.b #35	ENSGT00930000151014.q #36	ENSGT00940000159815 #37
Ovalentaria	ANCESTRAL SPECIES	10	ENSGT00940000164710	ENSGT00530000063651.b #7	ENSGT00950000183044.a.a.b	ENSGT00620000087966.a #9	ENSGT00390000009517 #10	ENSGT00390000006223 #11	ENSGT00390000005700 #12	ENSGT00940000156613 #13	ENSGT00940000156816 #14	ENSGT01030000234575.c.a.a.a.a.b.b.a #15	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.b #16	ENSGT01030000234575.c.a.a.a.a.b.b.b #19	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.a #20	ENSGT01030000234575.c.a.a.a.a.b.a.a.b ##20	ENSGT00940000156145 #21	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00940000164930.a #24	ENSGT00940000155693.a.b #25	ENSGT01030000234625.B.d.c.a #26	ENSGT01030000234625.B.d.d.b.a ##26	ENSGT00390000010925 #28	ENSGT00940000162910 #29	ENSGT00940000162939	ENSGT00940000155747.g.a #31	ENSGT00390000012060 #32	ENSGT00410000025698.b #33	ENSGT00940000153433.A.f #34	ENSGT00940000154790.b.a.b #35	ENSGT00930000151014.q #36	ENSGT00940000159815 #37
Ovalentaria_B	ANCESTRAL SPECIES	18	ENSGT00940000164710	ENSGT00530000063651.b #7	ENSGT00950000183044.a.a.b	ENSGT00620000087966.a #9	ENSGT00390000009517 #10	ENSGT00390000006223 #11	ENSGT00390000005700 #12	ENSGT00940000156613 #13	ENSGT00940000156816 #14	ENSGT01030000234575.c.a.a.a.a.b.b.a #15	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.b #16	ENSGT01030000234575.c.a.a.a.a.b.b.b #19	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.a #20	ENSGT01030000234575.c.a.a.a.a.b.a.a.b ##20	ENSGT00940000156145 #21	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00940000164930.a #24	ENSGT00940000155693.a.b #25	ENSGT01030000234625.B.d.c.a #26	ENSGT01030000234625.B.d.d.b.a ##26	ENSGT00390000010925 #28	ENSGT00940000162910 #29	ENSGT00940000162939	ENSGT00940000155747.g.a #31	ENSGT00390000012060 #32	ENSGT00410000025698.b #33	ENSGT00940000153433.A.f #34	ENSGT00940000154790.b.a.b #35	ENSGT00930000151014.q #36	ENSGT00940000159815 #37
Cichlidae	ANCESTRAL SPECIES	22	ENSGT00390000006580	ENSGT00940000164710	ENSGT00530000063651.b #7	ENSGT00950000183044.a.a.b	ENSGT00620000087966.a #9	ENSGT00390000009517 #10	ENSGT00390000006223 #11	ENSGT00390000005700 #12	ENSGT00940000156613.h #13	ENSGT00940000156816 #14	ENSGT01030000234575.c.a.a.a.a.b.b.a #15	ENSGT00940000174567	ENSGT01030000234575.c.a.a.a.a.b.b.b #19	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.a #20	ENSGT00940000156145 #21	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00940000164930.a #24	ENSGT00940000155693.a.b #25	ENSGT01030000234625.B.d.c.a #26	ENSGT01030000234625.B.d.d.b.a ##26	ENSGT00390000010925 #28	ENSGT00940000162910 #29	ENSGT00940000177781 #30	ENSGT00940000155747.g.a #31	ENSGT00390000012060 #32	ENSGT00410000025698.b #33	ENSGT00940000153433.A.f #34	ENSGT00940000154790.b.a.b #35	ENSGT00930000151014.q #36	ENSGT00940000159815 #37
Pseudocrenilabrinae	ANCESTRAL SPECIES	8	ENSGT00390000009517 #10	ENSGT00390000006223 #11	ENSGT00390000005700 #12	ENSGT00940000156613.h #13	ENSGT00940000156816 #14	ENSGT01030000234575.c.a.a.a.a.b.b.a #15	ENSGT00940000174567	ENSGT00990000208419.a	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.a.c.a #17	ENSGT01030000234575.c.a.a.a.a.b.b.b.d.b ##20	ENSGT01030000234575.c.a.a.a.a.b.b.b.d.a ##20	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.a.d ##20	ENSGT01030000234575.c.a.a.a.a.b.b.b.c.b #19	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.a.c.b #20	ENSGT00940000156145 #21	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00940000164930.a #24	ENSGT00940000155693.a.b #25	ENSGT01030000234625.B.d.c.a #26	ENSGT01030000234625.B.d.d.b.a ##26	ENSGT00390000010925 #28	ENSGT00940000162910 #29	ENSGT00940000177781 #30	ENSGT00940000155747.g.a #31	ENSGT00390000012060 #32	ENSGT00410000025698.b #33	ENSGT00940000153433.A.f #34	ENSGT00940000154790.b.a.b #35	ENSGT00930000151014.q #36	ENSGT00940000159815 #37
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	6	ENSGT00620000087966.a #9	ENSGT00390000009517 #10	ENSGT00390000006223 #11	ENSGT00390000005700 #12	ENSGT00940000156613.h #13	ENSGT00940000156816 #14	ENSGT01030000234575.c.a.a.a.a.b.b.a #15	ENSGT00940000174567	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.a.c.a #17	ENSGT01030000234575.c.a.a.a.a.b.b.b.d.b ##20	ENSGT01030000234575.c.a.a.a.a.b.b.b.d.a ##20	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.a.d ##20	ENSGT01030000234575.c.a.a.a.a.b.b.b.c.b #19	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.a.c.b #20	ENSGT00940000156145 #21	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00940000164930.a #24	ENSGT00940000155693.a.b #25	ENSGT01030000234625.B.d.c.a #26	ENSGT01030000234625.B.d.d.b.a ##26	ENSGT00390000010925 #28	ENSGT00940000162910 #29	ENSGT00940000177781 #30	ENSGT00940000155747.g.a #31	ENSGT00390000012060 #32	ENSGT00410000025698.b #33	ENSGT00940000153433.A.f #34	ENSGT00940000154790.b.a.b #35	ENSGT00930000151014.q #36	ENSGT00940000159815 #37
Haplochromini	ANCESTRAL SPECIES	7	ENSGT00950000183044.a.a.b	ENSGT00620000087966.a #9	ENSGT00390000009517 #10	ENSGT00390000006223 #11	ENSGT00390000005700 #12	ENSGT00940000156613.h #13	ENSGT00940000156816 #14	ENSGT01030000234575.c.a.a.a.a.b.b.a #15	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.b #16	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.a.c.a #17	ENSGT01030000234575.c.a.a.a.a.b.b.b.d.b ##20	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.a.d ##20	ENSGT01030000234575.c.a.a.a.a.b.b.b.c.b #19	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.a.c.b #20	ENSGT00940000156145 #21	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00940000164930.a #24	ENSGT00940000155693.a.b #25	ENSGT01030000234625.B.d.c.a #26	ENSGT01030000234625.B.d.d.b.a ##26	ENSGT00390000010925 #28	ENSGT00940000162910 #29	ENSGT00940000177781 #30	ENSGT00940000155747.g.a #31	ENSGT00390000012060 #32	ENSGT00410000025698.b #33	ENSGT00940000153433.A.f #34	ENSGT00940000154790.b.a.b #35	ENSGT00930000151014.q #36	ENSGT00940000159815 #37
Haplochromini_A	ANCESTRAL SPECIES	7	ENSGT00620000087966.a #9	ENSGT00390000009517 #10	ENSGT00390000006223 #11	ENSGT00390000005700 #12	ENSGT00940000156613.h #13	ENSGT00940000156816 #14	ENSGT01030000234575.c.a.a.a.a.b.b.a #15	ENSGT00940000174567	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.b #16	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.a.c.a #17	ENSGT01030000234575.c.a.a.a.a.b.b.b.d.b ##20	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.a.d ##20	ENSGT01030000234575.c.a.a.a.a.b.b.b.c.b #19	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.a.c.b #20	ENSGT00940000156145 #21	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00940000164930.a #24	ENSGT00940000155693.a.b #25	ENSGT01030000234625.B.d.c.a #26	ENSGT00390000010925 #28	ENSGT00940000162910 #29	ENSGT00940000177781 #30	ENSGT00940000155747.g.a #31	ENSGT00390000012060 #32	ENSGT00410000025698.b #33	ENSGT00940000153433.A.f #34	ENSGT00940000154790.b.a.b #35	ENSGT00930000151014.q #36	ENSGT00940000159815 #37	ENSGT00940000155454.w.a.a
Haplochromini_B	ANCESTRAL SPECIES	13	ENSGT00940000175915 #8	ENSGT00620000087966.a #9	ENSGT00390000009517 #10	ENSGT00390000006223 #11	ENSGT00390000005700 #12	ENSGT00940000156613.h #13	ENSGT00940000156816 #14	ENSGT01030000234575.c.a.a.a.a.b.b.a #15	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.b #16	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.a.c.a #17	ENSGT01030000234575.c.a.a.a.a.b.b.b.d.b ##20	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.a.d ##20	ENSGT01030000234575.c.a.a.a.a.b.b.b.c.b #19	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.a.c.b #20	ENSGT00940000156145 #21	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00940000164930.a #24	ENSGT00940000155693.a.b #25	ENSGT01030000234625.B.d.c.a #26	ENSGT00390000010925 #28	ENSGT00940000162910 #29	ENSGT00940000177781 #30	ENSGT00940000155747.g.a #31	ENSGT00390000012060 #32	ENSGT00410000025698.b #33	ENSGT00940000153433.A.f #34	ENSGT00940000154790.b.a.b #35	ENSGT00930000151014.q #36	ENSGT00940000159815 #37	ENSGT00940000155454.w.a.a
Zebra mbuna	MODERN SPECIES	11	tmed8 (ENSMZEG00005020739) #7	ENSMZEG00005020743 #8	ATG2B (ENSMZEG00005020754) #9	gskip (ENSMZEG00005020767) #10	npc2.1 (ENSMZEG00005020770) #11	isca2 (ENSMZEG00005020772) #12	EML5 (ENSMZEG00005020778) #13	ttc8 (ENSMZEG00005020788) #14	ENSMZEG00005020797 #15	ENSMZEG00005020800 #16	ENSMZEG00005020803 #17	ENSMZEG00005020806 #18	ENSMZEG00005020810 #19	ENSMZEG00005020813 #20	NEK9 (ENSMZEG00005020817) #21	ENSMZEG00005020826 #22	MLH3 (ENSMZEG00005020828) #23	ENSMZEG00005020833 #24	JDP2 (ENSMZEG00005020836) #25	FLVCR2 (ENSMZEG00005020841) #26	ENSMZEG00005020846 #27	ERG28 (ENSMZEG00005020851) #28	ENSMZEG00005020854 #29	ENSMZEG00005020858 #30	tgfb3 (ENSMZEG00005020864) #31	IFT43 (ENSMZEG00005020870) #32	GPATCH2L (ENSMZEG00005020876) #33	ESRRB (ENSMZEG00005020880) #34	prox2 (ENSMZEG00005020890) #35	dlst (ENSMZEG00005020939) #36	RPS6KL1 (ENSMZEG00005020941) #37
Eastern happy	MODERN SPECIES	10	tmed8 (ENSACLG00000023624) #7	ATG2B (ENSACLG00000023637) #9	gskip (ENSACLG00000023830) #10	npc2.1 (ENSACLG00000023844) #11	isca2 (ENSACLG00000023953) #12	EML5 (ENSACLG00000023969) #13	ttc8 (ENSACLG00000024073) #14	ENSACLG00000024117 #15	ENSACLG00000024128 #16	ENSACLG00000024140 #17	ENSACLG00000024144 ##20	ENSACLG00000024146 ##20	ENSACLG00000024153 #19	ENSACLG00000024344 #20	NEK9 (ENSACLG00000024366) #21	ENSACLG00000024424 #22	MLH3 (ENSACLG00000024432) #23	ENSACLG00000024472 #24	JDP2 (ENSACLG00000024478) #25	FLVCR2 (ENSACLG00000024486) #26	ERG28 (ENSACLG00000024499) #28	ENSACLG00000024531 #29	ENSACLG00000024537 #29	tgfb3 (ENSACLG00000024559) #31	IFT43 (ENSACLG00000024588) #32	GPATCH2L (ENSACLG00000024682) #33	ESRRB (ENSACLG00000024711) #34	prox2 (ENSACLG00000024761) #35	dlst (ENSACLG00000024780) #36	RPS6KL1 (ENSACLG00000024821) #37	ENSACLG00000024844
P. nyererei	MODERN SPECIES	418													ENSPNYG00000021367 #19	ENSPNYG00000021385 #20	NEK9 (ENSPNYG00000021405) #21	ENSPNYG00000021426 #22	ENSPNYG00000021432 #23	ENSPNYG00000021445 #23	ENSPNYG00000021461 #24	JDP2 (ENSPNYG00000021474) #25	FLVCR2 (ENSPNYG00000021487) ##26	ERG28 (ENSPNYG00000021518) #28	ENSPNYG00000021526 #29	ENSPNYG00000021536 #30	tgfb3 (ENSPNYG00000021547) #31	IFT43 (ENSPNYG00000021561) #32	GPATCH2L (ENSPNYG00000021578) #33	ESRRB (ENSPNYG00000021595) #34	prox2 (ENSPNYG00000021606) #35	dlst (ENSPNYG00000021627) #36	RPS6KL1 (ENSPNYG00000021655) #37
Burton s mouthbrooder	MODERN SPECIES	285	tmed8 (ENSHBUG00000019613) #7	NOXRED1 (ENSHBUG00000019593)	ATG2B (ENSHBUG00000019549) #9	gskip (ENSHBUG00000019220) #10	npc2.1 (ENSHBUG00000019206) #11	isca2 (ENSHBUG00000019196) #12	EML5 (ENSHBUG00000019180) #13	ttc8 (ENSHBUG00000019056) #14	ENSHBUG00000018964 #15	ENSHBUG00000018947 #16	ENSHBUG00000018926 #17	ENSHBUG00000018906 ##20	ENSHBUG00000018894 ##20	ENSHBUG00000018865 #20	NEK9 (ENSHBUG00000018851) #21	ENSHBUG00000018771 #22	MLH3 (ENSHBUG00000018766) #23	ENSHBUG00000018749 #24	JDP2 (ENSHBUG00000018738) #25	FLVCR2 (ENSHBUG00000018722) ##26	ERG28 (ENSHBUG00000018687) #28	ENSHBUG00000018667 #29	tgfb3 (ENSHBUG00000018621) #31	IFT43 (ENSHBUG00000018591) #32	GPATCH2L (ENSHBUG00000018530) #33	ESRRB (ENSHBUG00000018505) #34	prox2 (ENSHBUG00000018457) #35	dlst (ENSHBUG00000018444) #36	RPS6KL1 (ENSHBUG00000018411) #37	ENSHBUG00000000936	LRRC74A (ENSHBUG00000018359)
Lyretail cichlid	MODERN SPECIES	299	gskip (ENSNBRG00000004640) #10	npc2.1 (ENSNBRG00000004628) #11	isca2 (ENSNBRG00000004609) #12	EML5 (ENSNBRG00000004484) #13	ttc8 (ENSNBRG00000004443) #14	ENSNBRG00000004432 #15	ENSNBRG00000004420 #16	ENSNBRG00000004402	ENSNBRG00000004394	ENSNBRG00000004378 ##20	ENSNBRG00000004355 ##20	ENSNBRG00000004315 ##20	ENSNBRG00000004293	ENSNBRG00000004273 ##20	NEK9 (ENSNBRG00000004206) #21	ENSNBRG00000004194 #22	ENSNBRG00000004184	MLH3 (ENSNBRG00000004159) #23	ENSNBRG00000004137 #24	JDP2 (ENSNBRG00000004110) #25	ENSNBRG00000004097 #26	FLVCR2 (ENSNBRG00000004058) ##26	ERG28 (ENSNBRG00000004037) #28	ENSNBRG00000004022 #29	ENSNBRG00000004002 #29	ENSNBRG00000003977 #30	tgfb3 (ENSNBRG00000003946) #31	IFT43 (ENSNBRG00000003925) #32	GPATCH2L (ENSNBRG00000003911) #33	ESRRB (ENSNBRG00000003887) #34	prox2 (ENSNBRG00000003860) #35
Nile tilapia	MODERN SPECIES	10	EML5 (ENSONIG00000020175) #13	ttc8 (ENSONIG00000020176) #14	ENSONIG00000020177 #16	ENSONIG00000040387 ##20	ENSONIG00000028507 #17	ENSONIG00000043196	ENSONIG00000020181 #17	ENSONIG00000020179 ##20	ENSONIG00000020180 #19	ENSONIG00000040533 ##20	ENSONIG00000034205 ##20	ENSONIG00000035684 #18	ENSONIG00000034187 #20	ENSONIG00000033262	NEK9 (ENSONIG00000020182) #21	ENSONIG00000020183 #22	MLH3 (ENSONIG00000020184) #23	ENSONIG00000020185 #24	JDP2 (ENSONIG00000020186) #25	FLVCR2 (ENSONIG00000020187) ##26	ERG28 (ENSONIG00000020188) #28	ENSONIG00000020189 #29	tgfb3 (ENSONIG00000020190) #31	IFT43 (ENSONIG00000037253) #32	GPATCH2L (ENSONIG00000020191) #33	ESRRB (ENSONIG00000020192) #34	prox2 (ENSONIG00000020193) #35	dlst (ENSONIG00000020194) #36	RPS6KL1 (ENSONIG00000020195) #37	ENSONIG00000020196	ENSONIG00000020197
Midas cichlid	MODERN SPECIES	150	zgc:163014 (ENSACIG00000007365)	tmed8 (ENSACIG00000007383) #7	ATG2B (ENSACIG00000007406) #9	gskip (ENSACIG00000007520) #10	npc2.1 (ENSACIG00000007526) #11	isca2 (ENSACIG00000007660) #12	EML5 (ENSACIG00000007683) #13	ttc8 (ENSACIG00000007783) #14	ENSACIG00000007814 #15	ENSACIG00000007829	ENSACIG00000007841 #19	ENSACIG00000007862	ENSACIG00000007883 #19	ENSACIG00000007938 #19	NEK9 (ENSACIG00000007963) #21	ENSACIG00000008009 #22	ENSACIG00000008029 #23	ENSACIG00000008052 #24	JDP2 (ENSACIG00000008079) #25	ENSACIG00000008112 ##26	FLVCR2 (ENSACIG00000008129) #26	ERG28 (ENSACIG00000008170) #28	ENSACIG00000008186 #29	ENSACIG00000008200 #30	tgfb3 (ENSACIG00000008212) #31	IFT43 (ENSACIG00000008236) #32	GPATCH2L (ENSACIG00000008257) #33	ESRRB (ENSACIG00000008268) #34	prox2 (ENSACIG00000008285) #35	dlst (ENSACIG00000008305) #36	RPS6KL1 (ENSACIG00000008333) #37
Pomacentridae	ANCESTRAL SPECIES	19	ENSGT00940000164710	ENSGT00530000063651.b #7	ENSGT00950000183044.a.a.b	ENSGT00620000087966.a #9	ENSGT00390000009517 #10	ENSGT00390000006223 #11	ENSGT00390000005700 #12	ENSGT00940000156613 #13	ENSGT00940000156816 #14	ENSGT01030000234575.c.a.a.a.a.b.b.a #15	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.b #16	ENSGT01030000234575.c.a.a.a.a.b.b.b #19	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.a #20	ENSGT01030000234575.c.a.a.a.a.b.a.a.b ##20	ENSGT00940000156145 #21	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00940000164930.a #24	ENSGT00940000155693.a.b #25	ENSGT01030000234625.B.d.d.b.a ##26	ENSGT00390000010925 #28	ENSGT00940000162910 #29	ENSGT00940000162939	ENSGT00940000155747.g.a.h #31	ENSGT00390000012060 #32	ENSGT00410000025698.b #33	ENSGT00940000153433.A.f #34	ENSGT00940000154790.b.a.b #35	ENSGT00930000151014.q #36	ENSGT00940000159815 #37	ENSGT00940000155454.w.a.a
Pomacentridae_A	ANCESTRAL SPECIES	19	ENSGT00940000164710	ENSGT00530000063651.b #7	ENSGT00950000183044.a.a.b	ENSGT00620000087966.a #9	ENSGT00390000009517 #10	ENSGT00390000006223 #11	ENSGT00390000005700 #12	ENSGT00940000156613 #13	ENSGT00940000156816 #14	ENSGT01030000234575.c.a.a.a.a.b.b.a #15	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.b #16	ENSGT01030000234575.c.a.a.a.a.b.b.b #19	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.a #20	ENSGT01030000234575.c.a.a.a.a.b.a.a.b ##20	ENSGT00940000156145 #21	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00940000164930.a #24	ENSGT00940000155693.a.b #25	ENSGT01030000234625.B.d.d.b.a ##26	ENSGT00390000010925 #28	ENSGT00940000162910 #29	ENSGT00940000162939	ENSGT00940000155747.g.a.h #31	ENSGT00390000012060 #32	ENSGT00410000025698.b #33	ENSGT00940000153433.A.f #34	ENSGT00940000154790.b.a.b #35	ENSGT00930000151014.q #36	ENSGT00940000159815 #37	ENSGT00940000155454.w.a.a
Amphiprion	ANCESTRAL SPECIES	12	ENSGT00940000164710	ENSGT00530000063651.b #7	ENSGT00950000183044.a.a.b	ENSGT00620000087966.a #9	ENSGT00390000009517 #10	ENSGT00390000006223 #11	ENSGT00390000005700 #12	ENSGT00940000156613 #13	ENSGT00940000156816 #14	ENSGT01030000234575.c.a.a.a.a.b.b.a #15	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.b #16	ENSGT01030000234575.c.a.a.a.a.b.b.b #19	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.a #20	ENSGT01030000234575.c.a.a.a.a.b.a.a.b ##20	ENSGT00940000156145 #21	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00940000164930.a #24	ENSGT00940000155693.a.b #25	ENSGT01030000234625.B.d.d.b.a ##26	ENSGT00390000010925 #28	ENSGT00940000162910 #29	ENSGT00940000162939	ENSGT00940000155747.g.a.h #31
Clown anemonefish	MODERN SPECIES	1431															NEK9 (ENSAOCG00000013138) #21	ENSAOCG00000013146 #22	ENSAOCG00000013184 #23	ENSAOCG00000013202 #24	JDP2 (ENSAOCG00000013212) #25	FLVCR2 (ENSAOCG00000013231) ##26	ERG28 (ENSAOCG00000013249) #28	ENSAOCG00000013283
Orange clownfish	MODERN SPECIES	9	gstz1 (ENSAPEG00000024491)	zgc:163014 (ENSAPEG00000024503)	tmed8 (ENSAPEG00000000322) #7	NOXRED1 (ENSAPEG00000000345)	ATG2B (ENSAPEG00000000393) #9	gskip (ENSAPEG00000000534) #10	npc2.1 (ENSAPEG00000000554) #11	isca2 (ENSAPEG00000000560) #12	EML5 (ENSAPEG00000000586) #13	ttc8 (ENSAPEG00000000736) #14	ENSAPEG00000000801 #15	ENSAPEG00000000832 #16	ENSAPEG00000000890 #19	ENSAPEG00000000904 ##20	NEK9 (ENSAPEG00000000928) #21	ENSAPEG00000000944 #22	ENSAPEG00000000961 #23	ENSAPEG00000001019 #24	JDP2 (ENSAPEG00000001021) #25	FLVCR2 (ENSAPEG00000001034) ##26	ERG28 (ENSAPEG00000001045) #28	ENSAPEG00000001073 #29	ENSAPEG00000001097	tgfb3 (ENSAPEG00000001156) #31	snx6 (ENSAPEG00000001199)	psma3 (ENSAPEG00000001270)	ENSAPEG00000001329	ENSAPEG00000001342	irf2bpl (ENSAPEG00000001359)	dact1 (ENSAPEG00000001412)	lgals3b (ENSAPEG00000001426)
Spiny chromis	MODERN SPECIES	154	gstz1 (ENSAPOG00000002595)	tmed8 (ENSAPOG00000000828) #7	NOXRED1 (ENSAPOG00000002643)	ATG2B (ENSAPOG00000002779) #9	gskip (ENSAPOG00000002810) #10	npc2.1 (ENSAPOG00000000060) #11	isca2 (ENSAPOG00000002937) #12	EML5 (ENSAPOG00000003064) #13	ttc8 (ENSAPOG00000003112) #14	ENSAPOG00000003121 #15	ENSAPOG00000000929 #16	ENSAPOG00000003145 #19	ENSAPOG00000003161 #20	ENSAPOG00000003174 ##20	NEK9 (ENSAPOG00000003199) #21	ENSAPOG00000003214 #22	ENSAPOG00000003226 #23	ENSAPOG00000003235 #24	JDP2 (ENSAPOG00000003248) #25	FLVCR2 (ENSAPOG00000003292) ##26	ERG28 (ENSAPOG00000003330) #28	ENSAPOG00000003392 #29	tgfb3 (ENSAPOG00000003404) #31	IFT43 (ENSAPOG00000003418) #32	GPATCH2L (ENSAPOG00000003442) #33
Bicolor damselfish	MODERN SPECIES	244	zgc:163014 (ENSSPAG00000009950)	tmed8 (ENSSPAG00000009938) #7	NOXRED1 (ENSSPAG00000009929)	ATG2B (ENSSPAG00000009869) #9	gskip (ENSSPAG00000009855) #10	npc2.1 (ENSSPAG00000009838) #11	isca2 (ENSSPAG00000009824) #12	EML5 (ENSSPAG00000009735) #13	ttc8 (ENSSPAG00000009650) #14	ENSSPAG00000009635 #15	ENSSPAG00000009616 #16	ENSSPAG00000009603 #19	ENSSPAG00000009596 #20	ENSSPAG00000009588 ##20	NEK9 (ENSSPAG00000009560) #21	ENSSPAG00000009542 #22	MLH3 (ENSSPAG00000009525) #23	ENSSPAG00000009516 #24	ENSSPAG00000009505 ##25	FLVCR2 (ENSSPAG00000009467) ##26	ERG28 (ENSSPAG00000009448) #28	ENSSPAG00000009438 #29	ENSSPAG00000009413	tgfb3 (ENSSPAG00000009377) #31	IFT43 (ENSSPAG00000009354) #32	GPATCH2L (ENSSPAG00000009339) #33	ESRRB (ENSSPAG00000009297) #34	prox2 (ENSSPAG00000009278) #35	dlst (ENSSPAG00000009222) #36	RPS6KL1 (ENSSPAG00000009189) #37	ENSSPAG00000009174
Atherinomorphae	ANCESTRAL SPECIES	11	ENSGT00940000164710	ENSGT00530000063651.b #7	ENSGT00950000183044.a.a.b	ENSGT00620000087966.a #9	ENSGT00390000009517 #10	ENSGT00390000006223 #11	ENSGT00390000005700 #12	ENSGT00940000156613 #13	ENSGT00940000156816 #14	ENSGT01030000234575.c.a.a.a.a.b.b.a #15	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.b #16	ENSGT01030000234575.c.a.a.a.a.b.b.b #19	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.a #20	ENSGT01030000234575.c.a.a.a.a.b.a.a.b ##20	ENSGT00940000156145 #21	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00940000164930.a #24	ENSGT00940000155693.a.b #25	ENSGT01030000234625.B.d.c.a #26	ENSGT00390000010925 #28	ENSGT00940000162910 #29	ENSGT00940000162939	ENSGT00940000155747.g.a #31	ENSGT00390000012060 #32	ENSGT00410000025698.b #33	ENSGT00940000153433.A.f #34	ENSGT00940000154790.b.a.b #35	ENSGT00930000151014.q #36	ENSGT00940000159815 #37	ENSGT00940000155454.w.a.b
Oryzias	ANCESTRAL SPECIES	3	ENSGT00940000164710	ENSGT00530000063651.b #7	ENSGT00950000183044.a.a.b	ENSGT00620000087966.a #9	ENSGT00390000009517 #10	ENSGT00390000006223 #11	ENSGT00390000005700 #12	ENSGT00940000156613 #13	ENSGT00940000156816 #14	ENSGT01030000234575.c.a.a.a.a.b.b.a #15	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.b #16	ENSGT01030000234575.c.a.a.a.a.b.b.b #19	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.a.b #20	ENSGT01030000234575.c.a.a.a.a.b.a.a.b ##20	ENSGT00940000156145 #21	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00940000164930.a #24	ENSGT00940000155693.a.b #25	ENSGT01030000234625.B.d.c.a #26	ENSGT00390000010925 #28	ENSGT00940000162910 #29	ENSGT00940000162939	ENSGT00940000155747.g.a #31	ENSGT00390000012060 #32	ENSGT00410000025698.b #33	ENSGT00940000153433.A.f #34	ENSGT00940000154790.b.a.b #35	ENSGT00930000151014.q #36	ENSGT00940000159815 #37	ENSGT00940000154297.A.g.a
Oryzias_a	ANCESTRAL SPECIES	11	ENSGT00940000164710	ENSGT00530000063651.b #7	ENSGT00620000087966.a #9	ENSGT00390000009517 #10	ENSGT00390000006223 #11	ENSGT00390000005700 #12	ENSGT00940000156613 #13	ENSGT00940000156816 #14	ENSGT01030000234575.c.a.a.a.a.b.b.a #15	ENSGT00940000174567	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.b #16	ENSGT01030000234575.c.a.a.a.a.b.b.b #19	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.a.b #20	ENSGT01030000234575.c.a.a.a.a.b.a.a.b ##20	ENSGT00940000156145 #21	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00940000164930.a #24	ENSGT00940000155693.a.b #25	ENSGT01030000234625.B.d.c.a #26	ENSGT00390000010925 #28	ENSGT00940000162910 #29	ENSGT00940000155747.g.a #31	ENSGT00390000012060 #32	ENSGT00410000025698.b #33	ENSGT00940000153433.A.f #34	ENSGT00940000154790.b.a.b #35	ENSGT00930000151014.q #36	ENSGT00940000159815 #37	ENSGT00940000154297.A.g.a	ENSGT00940000159057
Japanese Medaka HdrR	MODERN SPECIES	14	zgc:163014 (ENSORLG00000016320)	tmed8 (ENSORLG00000016326) #7	ATG2B (ENSORLG00000016349) #9	npc2.1 (ENSORLG00000022170) #11	gskip (ENSORLG00000016354) #10	isca2 (ENSORLG00000016363) #12	EML5 (ENSORLG00000016408) #13	ENSORLG00000016451 #15	ttc8 (ENSORLG00000016437) #14	ENSORLG00000016456 #16	ENSORLG00000028807 #19	ENSORLG00000025036 #20	ENSORLG00000026672 ##20	ENSORLG00000029477 ##20	NEK9 (ENSORLG00000016466) #21	ENSORLG00000028769 #22	ENSORLG00000016499 #23	ENSORLG00000016509 #24	JDP2 (ENSORLG00000029498) #25	FLVCR2 (ENSORLG00000016522) #26	ERG28 (ENSORLG00000016527) #28	ENSORLG00000024651 #29	tgfb3 (ENSORLG00000016565) #31	IFT43 (ENSORLG00000016572) #32	GPATCH2L (ENSORLG00000022664) #33	esrrb (ENSORLG00000016581) #34	prox2 (ENSORLG00000016587) #35	dlst (ENSORLG00000016623) #36	RPS6KL1 (ENSORLG00000016629) #37	LRRC74A (ENSORLG00000016633)	ENSORLG00000016639
Chinese medaka	MODERN SPECIES	2368																ENSOSIG00000012951 #22
Oryzias_b	ANCESTRAL SPECIES	12	ENSGT00530000063651.b #7	ENSGT00950000183044.a.a.b	ENSGT00620000087966.a #9	ENSGT00390000009517 #10	ENSGT00390000006223 #11	ENSGT00390000005700 #12	ENSGT00940000156613 #13	ENSGT00940000156816 #14	ENSGT01030000234575.c.a.a.a.a.b.b.a #15	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.b #16	ENSGT01030000234575.c.a.a.a.a.b.b.b #19	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.a.a.a #20	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.a.a.b #20	ENSGT01030000234575.c.a.a.a.a.b.a.a.b ##20	ENSGT00940000156145 #21	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00940000164930.a #24	ENSGT00940000155693.a.b #25	ENSGT01030000234625.B.d.c.a #26	ENSGT00390000010925 #28	ENSGT00940000162910 #29	ENSGT00940000162939	ENSGT00940000155747.g.a #31	ENSGT00390000012060 #32	ENSGT00410000025698.b #33	ENSGT00940000153433.A.f #34	ENSGT00940000154790.b.a.b #35	ENSGT00930000151014.q #36	ENSGT00940000159815 #37	ENSGT00940000154297.A.g.a
Indian medaka	MODERN SPECIES		ENSOMEG00000021655 #9	ENSOMEG00000021632	ENSOMEG00000021616 #9	npc2.1 (ENSOMEG00000021603) #11	gskip (ENSOMEG00000021589) #10	isca2 (ENSOMEG00000021582) #12	EML5 (ENSOMEG00000021512) #13	ttc8 (ENSOMEG00000021289) #14	ENSOMEG00000021398 #15	ENSOMEG00000021211 #16	ENSOMEG00000021194 #19	ENSOMEG00000021178 #20	ENSOMEG00000021163 #20	ENSOMEG00000021145 #20	NEK9 (ENSOMEG00000021129) #21	ENSOMEG00000021096 #22	ENSOMEG00000021076 #23	ENSOMEG00000020995 #24	JDP2 (ENSOMEG00000020954) #25	FLVCR2 (ENSOMEG00000020912) #26	ERG28 (ENSOMEG00000020883) #28	ENSOMEG00000020849 #29	ENSOMEG00000020840	tgfb3 (ENSOMEG00000020809) #31	IFT43 (ENSOMEG00000020751) #32	GPATCH2L (ENSOMEG00000020697) #33	ESRRB (ENSOMEG00000020638) #34	prox2 (ENSOMEG00000020556) #35	dlst (ENSOMEG00000020530) #36	RPS6KL1 (ENSOMEG00000020459) #37	ANGEL1 (ENSOMEG00000020430)
Javanese ricefish	MODERN SPECIES	14	tmed8 (ENSOJAG00000005525) #7	NOXRED1 (ENSOJAG00000005479)	ATG2B (ENSOJAG00000005376) #9	gskip (ENSOJAG00000005347) #10	npc2.1 (ENSOJAG00000005342) #11	isca2 (ENSOJAG00000005334) #12	EML5 (ENSOJAG00000005258) #13	ttc8 (ENSOJAG00000005178) #14	ENSOJAG00000005164 #15	ENSOJAG00000005156 #16	ENSOJAG00000005144	ENSOJAG00000005100 #20	ENSOJAG00000005078 #20	ENSOJAG00000005066 ##20	NEK9 (ENSOJAG00000004956) #21	ENSOJAG00000004937 #22	ENSOJAG00000004920 #23	ENSOJAG00000004732 #24	JDP2 (ENSOJAG00000004690) #25	FLVCR2 (ENSOJAG00000004190) #26	ERG28 (ENSOJAG00000004081) #28	ENSOJAG00000003950 #29	tgfb3 (ENSOJAG00000003928) #31	IFT43 (ENSOJAG00000003918) #32	GPATCH2L (ENSOJAG00000003875) #33	ESRRB (ENSOJAG00000003699) #34	prox2 (ENSOJAG00000003608) #35	dlst (ENSOJAG00000003574) #36	RPS6KL1 (ENSOJAG00000022916) #37	LRRC74A (ENSOJAG00000022909)	ANGEL1 (ENSOJAG00000022907)
Cyprinodontiformes	ANCESTRAL SPECIES	23	ENSGT00390000006580	ENSGT00940000164710	ENSGT00530000063651.b #7	ENSGT00950000183044.a.a.b	ENSGT00620000087966.a #9	ENSGT00390000009517 #10	ENSGT00390000006223 #11	ENSGT00390000005700 #12	ENSGT00940000156613 #13	ENSGT00940000156816 #14	ENSGT01030000234575.c.a.a.a.a.b.b.a #15	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.b #16	ENSGT01030000234575.c.a.a.a.a.b.b.b #19	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.a #20	ENSGT00940000156145 #21	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00940000164930.a #24	ENSGT00940000155693.a.b #25	ENSGT01030000234625.B.d.c.a #26	ENSGT00390000010925 #28	ENSGT00940000162910 #29	ENSGT00940000177781 #30	ENSGT00940000155747.g.a #31	ENSGT00390000012060 #32	ENSGT00410000025698.b #33	ENSGT00940000153433.A.f #34	ENSGT00940000154790.b.a.b #35	ENSGT00930000151014.q #36	ENSGT00940000159815 #37	ENSGT00940000155454.w.a.b
Aplocheiloidei	ANCESTRAL SPECIES	15	ENSGT00390000006580	ENSGT00940000164710	ENSGT00530000063651.b #7	ENSGT00950000183044.a.a.b	ENSGT00620000087966.a #9	ENSGT00390000009517 #10	ENSGT00390000006223 #11	ENSGT00390000005700 #12	ENSGT00940000156613 #13	ENSGT00940000156816 #14	ENSGT01030000234575.c.a.a.a.a.b.b.a #15	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.b #16	ENSGT01030000234575.c.a.a.a.a.b.b.b #19	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.a #20	ENSGT00940000156145 #21	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00940000164930.a #24	ENSGT00940000155693.a.b #25	ENSGT01030000234625.B.d.c.a #26	ENSGT00390000010925 #28	ENSGT00940000162910 #29	ENSGT00940000155747.g.a #31	ENSGT00390000012060 #32	ENSGT00410000025698.b #33	ENSGT00940000153433.A.f #34	ENSGT00940000154790.b.a.b #35	ENSGT00930000151014.q #36	ENSGT00940000159815 #37	ENSGT00940000155454.w.a.b	ENSGT00940000155454.w.a.a
Mangrove rivulus	MODERN SPECIES	1	zgc:163014 (ENSKMAG00000003393)	tmed8 (ENSKMAG00000003386) #7	NOXRED1 (ENSKMAG00000003374)	ATG2B (ENSKMAG00000003284) #9	ENSKMAG00000003248 #9	gskip (ENSKMAG00000003233) #10	npc2.1 (ENSKMAG00000003135) #11	isca2 (ENSKMAG00000003115) #12	EML5 (ENSKMAG00000002983) #13	ttc8 (ENSKMAG00000002905) #14	ENSKMAG00000002881 #15	ENSKMAG00000002868 #16	ENSKMAG00000002860 #19	ENSKMAG00000002854 #20	NEK9 (ENSKMAG00000002833) #21	ENSKMAG00000002818 #22	ENSKMAG00000002802 #23	ENSKMAG00000002599 #24	JDP2 (ENSKMAG00000002558) #25	FLVCR2 (ENSKMAG00000002511) ##26	ERG28 (ENSKMAG00000002483) #28	ENSKMAG00000002437 #29	tgfb3 (ENSKMAG00000002413) #31	IFT43 (ENSKMAG00000002368) #32	GPATCH2L (ENSKMAG00000002351) #33	ESRRB (ENSKMAG00000002284) #34	prox2 (ENSKMAG00000002267) #35	dlst (ENSKMAG00000002252) #36	RPS6KL1 (ENSKMAG00000002235) #37	ENSKMAG00000002222	ENSKMAG00000002205
Turquoise killifish	MODERN SPECIES	1625	NGB (ENSNFUG00015021626)	coq6 (ENSNFUG00015021634)	ENTPD5 (ENSNFUG00015021720)	ENSNFUG00015021761	ALDH6A1 (ENSNFUG00015021782)	gstz1 (ENSNFUG00015022022)	zgc:163014 (ENSNFUG00015022030)	tmed8 (ENSNFUG00015022039) #7	gskip (ENSNFUG00015022080) #10	ISCA2 (ENSNFUG00015022087) #12	EML5 (ENSNFUG00015022102) #13	ttc8 (ENSNFUG00015022143) #14	ENSNFUG00015022179 #15	ENSNFUG00015022182	ENSNFUG00015022184 #20	ENSNFUG00015022220 #22	ENSNFUG00015022229 #23	ENSNFUG00015012380 #24	JDP2 (ENSNFUG00015012547) #25	FLVCR2 (ENSNFUG00015012556) #26	ERG28 (ENSNFUG00015012618) #28	ENSNFUG00015012630 #29	TGFB3 (ENSNFUG00015012658) #31	IFT43 (ENSNFUG00015012668) #32	GPATCH2L (ENSNFUG00015012681) #33	ESRRB (ENSNFUG00015012693) #34	prox2 (ENSNFUG00015012731) #35	DLST (ENSNFUG00015012758) #36	RPS6KL1 (ENSNFUG00015012869) #37	HSD17B8 (ENSNFUG00015012901)	ENSNFUG00015012991
Cyprinodontoidei	ANCESTRAL SPECIES	8	ENSGT00390000006580	ENSGT00940000164710	ENSGT00530000063651.b #7	ENSGT00950000183044.a.a.b	ENSGT00620000087966.a #9	ENSGT00390000009517 #10	ENSGT00390000006223 #11	ENSGT00390000005700 #12	ENSGT00940000156613 #13	ENSGT00940000156816 #14	ENSGT01030000234575.c.a.a.a.a.b.b.a #15	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.b #16	ENSGT01030000234575.c.a.a.a.a.b.b.b #19	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.a #20	ENSGT00940000156145 #21	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00940000164930.a #24	ENSGT00940000155693.a.b #25	ENSGT01030000234625.B.d.c.a #26	ENSGT00390000010925 #28	ENSGT00940000162910 #29	ENSGT00940000177781 #30	ENSGT00940000155747.g.a #31	ENSGT00390000012060 #32	ENSGT00410000025698.b #33	ENSGT00940000153433.A.f #34	ENSGT00940000154790.b.a.b #35	ENSGT00930000151014.q #36	ENSGT00940000159815 #37	ENSGT00940000155454.w.a.a
Poeciliinae	ANCESTRAL SPECIES	8	ENSGT00390000006580	ENSGT00940000164710	ENSGT00530000063651.b #7	ENSGT00950000183044.a.a.b	ENSGT00620000087966.a #9	ENSGT00390000009517 #10	ENSGT00390000006223 #11	ENSGT00390000005700 #12	ENSGT00940000156613 #13	ENSGT00940000156816 #14	ENSGT01030000234575.c.a.a.a.a.b.b.a #15	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.b #16	ENSGT01030000234575.c.a.a.a.a.b.b.b #19	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.a #20	ENSGT00940000156145 #21	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00940000164930.a #24	ENSGT00940000155693.a.b #25	ENSGT01030000234625.B.d.c.a #26	ENSGT00390000010925 #28	ENSGT00940000162910 #29	ENSGT00940000155747.g.a #31	ENSGT00390000012060 #32	ENSGT00410000025698.b #33	ENSGT00940000153433.A.f #34	ENSGT00940000154790.b.a.b #35	ENSGT00930000151014.q #36	ENSGT00940000159815 #37	ENSGT00940000155454.w.a.a	ENSGT00940000155454.w.b
Poecilia	ANCESTRAL SPECIES	10	ENSGT00390000006580	ENSGT00940000164710	ENSGT00530000063651.b #7	ENSGT00950000183044.a.a.b	ENSGT00620000087966.a #9	ENSGT00390000009517 #10	ENSGT00390000006223 #11	ENSGT00390000005700 #12	ENSGT00940000156613 #13	ENSGT00940000156816 #14	ENSGT01030000234575.c.a.a.a.a.b.b.a #15	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.b #16	ENSGT01030000234575.c.a.a.a.a.b.b.b #19	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.a #20	ENSGT00940000156145 #21	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00940000164930.a #24	ENSGT00940000155693.a.b #25	ENSGT01030000234625.B.d.c.a #26	ENSGT00390000010925 #28	ENSGT00940000162910 #29	ENSGT00940000155747.g.a #31	ENSGT00390000012060 #32	ENSGT00410000025698.b #33	ENSGT00940000153433.A.f #34	ENSGT00940000154790.b.a.b #35	ENSGT00930000151014.q #36	ENSGT00940000159815 #37	ENSGT00940000155454.w.a.a	ENSGT00940000155454.w.b
NAME_6	ANCESTRAL SPECIES	6	ENSGT00530000063651.b #7	ENSGT00950000183044.a.a.b	ENSGT00620000087966.a #9	ENSGT00390000009517.s #10	ENSGT00390000006223.c #11	ENSGT00390000009517.t #10	ENSGT00390000006223.d #11	ENSGT00390000005700 #12	ENSGT00940000156613 #13	ENSGT00940000156816 #14	ENSGT01030000234575.c.a.a.a.a.b.b.a #15	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.b #16	ENSGT01030000234575.c.a.a.a.a.b.b.b #19	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.a #20	ENSGT00940000156145 #21	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00940000164930.a #24	ENSGT00940000155693.a.b #25	ENSGT01030000234625.B.d.c.a #26	ENSGT00390000010925 #28	ENSGT00940000162910 #29	ENSGT00940000155747.g.a #31	ENSGT00390000012060 #32	ENSGT00410000025698.b #33	ENSGT00940000153433.A.f #34	ENSGT00940000154790.b.a.b #35	ENSGT00930000151014.q #36	ENSGT00940000159815 #37	ENSGT00940000155454.w.a.a	ENSGT00940000155454.w.b
Sailfin molly	MODERN SPECIES	364						ENSPLAG00000008095 #9	gskip (ENSPLAG00000008109) #10	NPC2 (ENSPLAG00000008128) #11	isca2 (ENSPLAG00000008136) #12	EML5 (ENSPLAG00000008373) #13	ttc8 (ENSPLAG00000008441) #14	ENSPLAG00000008463 #15	ENSPLAG00000008500 #19	ENSPLAG00000008590 #20	NEK9 (ENSPLAG00000008620) #21	ENSPLAG00000008628 #22	ENSPLAG00000008640 #23	ENSPLAG00000009128 #24	FLVCR2 (ENSPLAG00000009186) #26	ERG28 (ENSPLAG00000009211) #28	ENSPLAG00000009224 #29	ENSPLAG00000009247 #29	tgfb3 (ENSPLAG00000009277) #31	IFT43 (ENSPLAG00000009287) #32	GPATCH2L (ENSPLAG00000009312) #33
Amazon molly	MODERN SPECIES	282	tmed8 (ENSPFOG00000015795) #7	ENSPFOG00000015794	gskip (ENSPFOG00000015740) #10	NPC2 (ENSPFOG00000015721) #11	ATG2B (ENSPFOG00000015576) #9	gskip (ENSPFOG00000015548) #10	NPC2 (ENSPFOG00000015546) #11	isca2 (ENSPFOG00000015543) #12	EML5 (ENSPFOG00000015280) #13	ttc8 (ENSPFOG00000015227) #14	ENSPFOG00000015213 #15	ENSPFOG00000022333 #16	ENSPFOG00000015203 #19	ENSPFOG00000024162 #20	NEK9 (ENSPFOG00000015097) #21	ENSPFOG00000015092 #22	ENSPFOG00000015041 #23	ENSPFOG00000015030 #24	JDP2 (ENSPFOG00000015014) #25	FLVCR2 (ENSPFOG00000014890) #26	ERG28 (ENSPFOG00000014865) #28	ENSPFOG00000014806 #29	tgfb3 (ENSPFOG00000014756) #31	IFT43 (ENSPFOG00000014703) #32	GPATCH2L (ENSPFOG00000014687) #33	ESRRB (ENSPFOG00000014654) #34	prox2 (ENSPFOG00000014635) #35	dlst (ENSPFOG00000014514) #36	RPS6KL1 (ENSPFOG00000014419) #37	ENSPFOG00000014381	ENSPFOG00000014372
Guppy	MODERN SPECIES	453	aldh6a1 (ENSPREG00000010333)	gstz1 (ENSPREG00000010267)	zgc:163014 (ENSPREG00000010237)	tmed8 (ENSPREG00000010221) #7	NOXRED1 (ENSPREG00000010209)	ATG2B (ENSPREG00000010076) #9	gskip (ENSPREG00000010046) #10	npc2.1 (ENSPREG00000009939) #11	isca2 (ENSPREG00000009920) #12	EML5 (ENSPREG00000009770) #13	ttc8 (ENSPREG00000009689) #14	ENSPREG00000009739 #15	ENSPREG00000009670 #19	ENSPREG00000009658 #20	NEK9 (ENSPREG00000009628) #21	ENSPREG00000009615 #22	ENSPREG00000009604 #23	ENSPREG00000009598 #24	FLVCR2 (ENSPREG00000009584) #26	ERG28 (ENSPREG00000009563) #28	ENSPREG00000009465 #29	tgfb3 (ENSPREG00000009401) #31	IFT43 (ENSPREG00000009385) #32	GPATCH2L (ENSPREG00000009374) #33	ESRRB (ENSPREG00000009351) #34	prox2 (ENSPREG00000009326) #35	dlst (ENSPREG00000009199) #36	RPS6KL1 (ENSPREG00000009143) #37	ENSPREG00000009124	ENSPREG00000009113	ENSPREG00000009102
Platyfish	MODERN SPECIES	10	zgc:163014 (ENSXMAG00000015067)	tmed8 (ENSXMAG00000026398) #7	NOXRED1 (ENSXMAG00000024964)	ATG2B (ENSXMAG00000014982) #9	ENSXMAG00000023766 #9	gskip (ENSXMAG00000021582) #10	npc2.1 (ENSXMAG00000014967) #11	isca2 (ENSXMAG00000014962) #12	EML5 (ENSXMAG00000014899) #13	ttc8 (ENSXMAG00000014881) #14	ENSXMAG00000025642 #15	ENSXMAG00000020956 #16	ENSXMAG00000028329 #19	ENSXMAG00000014872 #20	NEK9 (ENSXMAG00000014847) #21	ENSXMAG00000028286 #22	ENSXMAG00000014821 #23	ENSXMAG00000021870 #24	JDP2 (ENSXMAG00000014805) #25	FLVCR2 (ENSXMAG00000026309) #26	ERG28 (ENSXMAG00000014769) #28	ENSXMAG00000014737 #29	tgfb3 (ENSXMAG00000014713) #31	IFT43 (ENSXMAG00000014700) #32	GPATCH2L (ENSXMAG00000029501) #33	ESRRB (ENSXMAG00000014672) #34	prox2 (ENSXMAG00000014663) #35	dlst (ENSXMAG00000014638) #36	RPS6KL1 (ENSXMAG00000014631) #37	ENSXMAG00000014621	ENSXMAG00000014617
NAME_4	ANCESTRAL SPECIES	18	ENSGT00940000154427.A.c	ENSGT00940000156110.c.a	ENSGT00390000006580	ENSGT00940000164710	ENSGT00530000063651.b #7	ENSGT00950000183044.a.a.b	ENSGT00620000087966.a #9	ENSGT00390000009517 #10	ENSGT00390000006223 #11	ENSGT00390000005700 #12	ENSGT00940000156613 #13	ENSGT00940000156816 #14	ENSGT01030000234575.c.a.a.a.a.b.b.a #15	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.b #16	ENSGT00940000156145 #21	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00940000164930.a #24	ENSGT00940000155693.a.b #25	ENSGT01030000234625.B.d.d.b.a ##26	ENSGT00390000010925 #28	ENSGT00940000162910 #29	ENSGT00940000177781 #30	ENSGT00940000155747.g.a #31	ENSGT00390000012060 #32	ENSGT00410000025698.b #33	ENSGT00940000153433.A.f #34	ENSGT00940000154790.b.a.b #35	ENSGT00930000151014.q #36	ENSGT00940000159815 #37	ENSGT00940000155454.w.a.a
Sheepshead minnow	MODERN SPECIES	490	BBOF1 (ENSCVAG00000022881)	aldh6a1 (ENSCVAG00000022872)	gstz1 (ENSCVAG00000022840)	zgc:163014 (ENSCVAG00000022830)	tmed8 (ENSCVAG00000022808) #7	ATG2B (ENSCVAG00000022803) #9	ENSCVAG00000022783 #9	gskip (ENSCVAG00000022739) #10	npc2.1 (ENSCVAG00000022728) #11	isca2 (ENSCVAG00000022712) #12	EML5 (ENSCVAG00000022697) #13	ttc8 (ENSCVAG00000022602) #14	ENSCVAG00000022550 #15	ENSCVAG00000022544 #16	NEK9 (ENSCVAG00000022531) #21	ENSCVAG00000022493 #22	MLH3 (ENSCVAG00000022485) #23	ENSCVAG00000022477 #24	JDP2 (ENSCVAG00000022457) #25	FLVCR2 (ENSCVAG00000022444) ##26	ERG28 (ENSCVAG00000022413) #28	ENSCVAG00000022405 #29	ENSCVAG00000022394 #30	tgfb3 (ENSCVAG00000000577) #31	IFT43 (ENSCVAG00000022374) #32	GPATCH2L (ENSCVAG00000022365) #33	ESRRB (ENSCVAG00000022357) #34	prox2 (ENSCVAG00000022322) #35	dlst (ENSCVAG00000022292) #36	RPS6KL1 (ENSCVAG00000022286) #37	ENSCVAG00000022271
Mummichog	MODERN SPECIES	99																ENSFHEG00000017548 #22	ENSFHEG00000017559 #23	ENSFHEG00000017571 #23
Percomorphaceae_C	ANCESTRAL SPECIES	12	ENSGT00940000164710	ENSGT00530000063651.b #7	ENSGT00950000183044.a.a.b	ENSGT00620000087966.a #9	ENSGT00390000009517 #10	ENSGT00390000006223 #11	ENSGT00390000005700 #12	ENSGT00940000156613 #13	ENSGT00940000156816 #14	ENSGT01030000234575.c.a.a.a.a.b.b.a #15	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.b #16	ENSGT01030000234575.c.a.a.a.a.b.b.b #19	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.a #20	ENSGT01030000234575.c.a.a.a.a.b.a.a.b ##20	ENSGT00940000156145 #21	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00940000164930.a #24	ENSGT00940000155693.a.b #25	ENSGT01030000234625.B.d.c.a #26	ENSGT01030000234625.B.d.d.b.a ##26	ENSGT00390000010925 #28	ENSGT00940000162910 #29	ENSGT00940000162939	ENSGT00940000155747.g.a #31	ENSGT00390000012060 #32	ENSGT00410000025698.b #33	ENSGT00940000153433.A.f #34	ENSGT00940000154790.b.a.b #35	ENSGT00930000151014.q #36	ENSGT00940000159815 #37
Eupercaria	ANCESTRAL SPECIES	9	ENSGT00940000164710	ENSGT00530000063651.b #7	ENSGT00950000183044.a.a.b	ENSGT00620000087966.a #9	ENSGT00390000009517 #10	ENSGT00390000006223 #11	ENSGT00390000005700 #12	ENSGT00940000156613 #13	ENSGT00940000156816 #14	ENSGT01030000234575.c.a.a.a.a.b.b.a #15	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.b #16	ENSGT01030000234575.c.a.a.a.a.b.b.b #19	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.a #20	ENSGT01030000234575.c.a.a.a.a.b.a.a.b ##20	ENSGT00940000156145 #21	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00940000164930.a #24	ENSGT00940000155693.a.b #25	ENSGT01030000234625.B.d.c.a #26	ENSGT00390000010925 #28	ENSGT00940000162910 #29	ENSGT00940000162939	ENSGT00940000155747.g.a #31	ENSGT00390000012060 #32	ENSGT00410000025698.b #33	ENSGT00940000153433.A.f #34	ENSGT00940000154790.b.a.b #35	ENSGT00930000151014.q #36	ENSGT00940000159815 #37	ENSGT00940000155454.w.a.b
Tetraodontidae	ANCESTRAL SPECIES	3	ENSGT00390000006580	ENSGT00940000164710	ENSGT00530000063651.b #7	ENSGT00620000087966.a #9	ENSGT00390000009517 #10	ENSGT00390000006223 #11	ENSGT00390000005700 #12	ENSGT00940000156613 #13	ENSGT00940000156816 #14	ENSGT01030000234575.c.a.a.a.a.b.b.a #15	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.b #16	ENSGT01030000234575.c.a.a.a.a.b.b.b #19	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.a #20	ENSGT01030000234575.c.a.a.a.a.b.a.a.b ##20	ENSGT00940000156145 #21	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00940000164930.a #24	ENSGT00940000155693.a.b #25	ENSGT01030000234625.B.d.d.a ##26	ENSGT00390000010925 #28	ENSGT00940000162910 #29	ENSGT00940000155747.g.a #31	ENSGT00390000012060 #32	ENSGT00410000025698.b #33	ENSGT00940000153433.A.f #34	ENSGT00940000154790.b.a.b #35	ENSGT00930000151014.q #36	ENSGT00940000159815 #37	ENSGT00940000155454.w.a.b	ENSGT00940000155454.w.b
Fugu	MODERN SPECIES	11	bbof1 (ENSTRUG00000018223)	aldh6a1 (ENSTRUG00000018226)	gstz1 (ENSTRUG00000032191)	zgc:163014 (ENSTRUG00000019659)	tmed8 (ENSTRUG00000018236) #7	ATG2B (ENSTRUG00000018239) #9	gskip (ENSTRUG00000018266) #10	npc2.1 (ENSTRUG00000018269) #11	isca2 (ENSTRUG00000028337) #12	ttc8 (ENSTRUG00000018291) #14	ENSTRUG00000018294 #15	ENSTRUG00000023246 #16	ENSTRUG00000032404 #19	ENSTRUG00000026423 #20	NEK9 (ENSTRUG00000018297) #21	ENSTRUG00000025329 #22	ENSTRUG00000018306 #23	TMED10 (ENSTRUG00000018311)	ENSTRUG00000018314 #24	JDP2 (ENSTRUG00000029600) #25	FLVCR2 (ENSTRUG00000018328) ##26	ERG28 (ENSTRUG00000032681) #28	ENSTRUG00000018337 #29	tgfb3 (ENSTRUG00000023926) #31	IFT43 (ENSTRUG00000018345) #32	GPATCH2L (ENSTRUG00000018346) #33	ESRRB (ENSTRUG00000018347) #34	prox2 (ENSTRUG00000023052) #35	dlst (ENSTRUG00000018357) #36	RPS6KL1 (ENSTRUG00000015530) #37	ENSTRUG00000015523
Tetraodon	MODERN SPECIES	1	ENTPD5 (ENSTNIG00000017389)	bbof1 (ENSTNIG00000017390)	aldh6a1 (ENSTNIG00000017391)	gstz1 (ENSTNIG00000017392)	zgc:163014 (ENSTNIG00000017393)	tmed8 (ENSTNIG00000017394) #7	ATG2B (ENSTNIG00000017395) #9	ENSTNIG00000017396 #9	gskip (ENSTNIG00000017397) #10	npc2.1 (ENSTNIG00000017398) #11	isca2 (ENSTNIG00000017399) #12	EML5 (ENSTNIG00000017400) #13	ENSTNIG00000000369	ENSTNIG00000017401 ##20	NEK9 (ENSTNIG00000017402) #21	ENSTNIG00000017403 #22	ENSTNIG00000017404 #23	ENSTNIG00000017405 #24	JDP2 (ENSTNIG00000017406) #25	FLVCR2 (ENSTNIG00000017407) ##26	ERG28 (ENSTNIG00000017408) #28	ENSTNIG00000017409 #29	tgfb3 (ENSTNIG00000017410) #31	IFT43 (ENSTNIG00000017411) #32	GPATCH2L (ENSTNIG00000017412) #33	ESRRB (ENSTNIG00000017413) #34	dlst (ENSTNIG00000017415) #36	prox2 (ENSTNIG00000017414) #35	dlst (ENSTNIG00000017416) #36	RPS6KL1 (ENSTNIG00000017417) #37	ENSTNIG00000017418
Eupecaria_A	ANCESTRAL SPECIES	10	ENSGT00940000164710	ENSGT00530000063651.b #7	ENSGT00950000183044.a.a.b	ENSGT00620000087966.a #9	ENSGT00390000009517 #10	ENSGT00390000006223 #11	ENSGT00390000005700 #12	ENSGT00940000156613 #13	ENSGT00940000156816 #14	ENSGT01030000234575.c.a.a.a.a.b.b.a #15	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.b #16	ENSGT01030000234575.c.a.a.a.a.b.b.b #19	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.a #20	ENSGT01030000234575.c.a.a.a.a.b.a.a.b ##20	ENSGT00940000156145 #21	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00940000164930.a #24	ENSGT00940000155693.a.b #25	ENSGT01030000234625.B.d.c.a #26	ENSGT00390000010925 #28	ENSGT00940000162910 #29	ENSGT00940000162939	ENSGT00940000155747.g.a #31	ENSGT00390000012060 #32	ENSGT00410000025698.b #33	ENSGT00940000153433.A.f #34	ENSGT00940000154790.b.a.b #35	ENSGT00930000151014.q #36	ENSGT00940000159815 #37	ENSGT00940000155454.w.a.b
Ballan wrasse	MODERN SPECIES	29	gstz1 (ENSLBEG00000001373)	zgc:163014 (ENSLBEG00000001345)	tmed8 (ENSLBEG00000001312) #7	NOXRED1 (ENSLBEG00000001306)	ATG2B (ENSLBEG00000001237) #9	ENSLBEG00000001213 #9	gskip (ENSLBEG00000001173) #10	npc2.1 (ENSLBEG00000001160) #11	isca2 (ENSLBEG00000001106) #12	EML5 (ENSLBEG00000000868) #13	ttc8 (ENSLBEG00000000763) #14	ENSLBEG00000000754 #15	ENSLBEG00000000747 #16	ENSLBEG00000000741 ##20	NEK9 (ENSLBEG00000000718) #21	ENSLBEG00000000708 #22	ENSLBEG00000000695 #23	ENSLBEG00000000673 #24	JDP2 (ENSLBEG00000000660) #25	ENSLBEG00000000640 ##26	FLVCR2 (ENSLBEG00000000549) #26	ERG28 (ENSLBEG00000000516) #28	ENSLBEG00000000473 #29	tgfb3 (ENSLBEG00000000436) #31	IFT43 (ENSLBEG00000000378) #32	GPATCH2L (ENSLBEG00000000361) #33	ESRRB (ENSLBEG00000000330) #34	prox2 (ENSLBEG00000000305) #35	dlst (ENSLBEG00000000267) #36	RPS6KL1 (ENSLBEG00000000250) #37	ENSLBEG00000000245
Eupecaria_B	ANCESTRAL SPECIES	11	ENSGT00940000164710	ENSGT00530000063651.b #7	ENSGT00950000183044.a.a.b	ENSGT00620000087966.a #9	ENSGT00390000009517 #10	ENSGT00390000006223 #11	ENSGT00390000005700 #12	ENSGT00940000156613 #13	ENSGT00940000156816 #14	ENSGT01030000234575.c.a.a.a.a.b.b.a #15	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.b #16	ENSGT01030000234575.c.a.a.a.a.b.b.b #19	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.a #20	ENSGT01030000234575.c.a.a.a.a.b.a.a.b ##20	ENSGT00940000156145 #21	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00940000164930.a #24	ENSGT00940000155693.a.b #25	ENSGT01030000234625.B.d.c.a #26	ENSGT00390000010925 #28	ENSGT00940000162910 #29	ENSGT00940000162939	ENSGT00940000155747.g.a #31	ENSGT00390000012060 #32	ENSGT00410000025698.b #33	ENSGT00940000153433.A.f #34	ENSGT00940000154790.b.a.b #35	ENSGT00930000151014.q #36	ENSGT00940000159815 #37	ENSGT00940000155454.w.a.b
Perciformes	ANCESTRAL SPECIES	12	ENSGT00940000156110.c.a	ENSGT00390000006580	ENSGT00940000164710	ENSGT00530000063651.b #7	ENSGT00950000183044.a.a.b	ENSGT00620000087966.a #9	ENSGT00390000009517 #10	ENSGT00390000006223 #11	ENSGT00390000005700 #12	ENSGT00940000156613 #13	ENSGT00940000156816 #14	ENSGT01030000234575.c.a.a.a.a.b.b.a #15	ENSGT00940000174567	ENSGT01030000234575.c.a.a.a.a.b.a.a.b ##20	ENSGT00940000156145 #21	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00940000164930.a #24	ENSGT00940000155693.a.b #25	ENSGT01030000234625.B.d.c.a #26	ENSGT00390000010925 #28	ENSGT00940000162910 #29	ENSGT00940000162939	ENSGT00940000155747.g.a #31	ENSGT00390000012060 #32	ENSGT00410000025698.b #33	ENSGT00940000153433.A.f #34	ENSGT00940000154790.b.a.b #35	ENSGT00930000151014.q #36	ENSGT00940000159815 #37	ENSGT00940000155454.w.a.a
Cottioidei	ANCESTRAL SPECIES	8	ENSGT00940000154427.A	ENSGT00940000156110.c.a	ENSGT00390000006580	ENSGT00940000164710	ENSGT00530000063651.b #7	ENSGT00950000183044.a.a.b	ENSGT00620000087966.a #9	ENSGT00390000009517 #10	ENSGT00390000006223 #11	ENSGT00390000005700 #12	ENSGT00940000156613 #13	ENSGT00940000156816 #14	ENSGT01030000234575.c.a.a.a.a.b.b.a #15	ENSGT01030000234575.c.a.a.a.a.b.a.a.b ##20	ENSGT00940000156145 #21	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00940000164930.a #24	ENSGT00940000155693.a.b #25	ENSGT01030000234625.B.d.c.a #26	ENSGT00390000010925 #28	ENSGT00940000162910 #29	ENSGT00940000162939	ENSGT00940000155747.g.a #31	ENSGT00390000012060 #32	ENSGT00410000025698.b #33	ENSGT00940000153433.A.f #34	ENSGT00940000154790.b.a.b #35	ENSGT00930000151014.q #36	ENSGT00940000159815 #37	ENSGT00940000155454.w.a.a
Lumpfish	MODERN SPECIES	14	coq6 (ENSCLMG00005015794)	ENTPD5 (ENSCLMG00005015790)	ENSCLMG00005015789	aldh6a1 (ENSCLMG00005015788)	gstz1 (ENSCLMG00005015751)	zgc:163014 (ENSCLMG00005015746)	tmed8 (ENSCLMG00005015743) #7	NOXRED1 (ENSCLMG00005015741)	ATG2B (ENSCLMG00005015730) #9	gskip (ENSCLMG00005015720) #10	npc2.1 (ENSCLMG00005015719) #11	isca2 (ENSCLMG00005015717) #12	ttc8 (ENSCLMG00005015714) #14	ENSCLMG00005015711 #15	NEK9 (ENSCLMG00005015709) #21	ENSCLMG00005015702 #22	ENSCLMG00005015701 #23	ENSCLMG00005015699 #23	ENSCLMG00005015697	ENSCLMG00005015619 #24	JDP2 (ENSCLMG00005015616) #25	FLVCR2 (ENSCLMG00005015510) ##26	ERG28 (ENSCLMG00005015509) #28	ENSCLMG00005015507 #29	ENSCLMG00005015505	tgfb3 (ENSCLMG00005015502) #31	IFT43 (ENSCLMG00005015500) #32	GPATCH2L (ENSCLMG00005015496) #33	ESRRB (ENSCLMG00005015485) #34	prox2 (ENSCLMG00005015484) #35	dlst (ENSCLMG00005015474) #36
Perciformes_a	ANCESTRAL SPECIES	10	ENSGT00940000156110.c.a	ENSGT00390000006580	ENSGT00940000164710	ENSGT00530000063651.b #7	ENSGT00950000183044.a.a.b	ENSGT00620000087966.a #9	ENSGT00390000009517 #10	ENSGT00390000006223 #11	ENSGT00390000005700 #12	ENSGT00940000156613 #13	ENSGT00940000156816 #14	ENSGT01030000234575.c.a.a.a.a.b.b.a #15	ENSGT00940000174567	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.a #20	ENSGT00940000156145 #21	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00940000164930.a #24	ENSGT00940000155693.a.b #25	ENSGT01030000234625.B.d.c.a #26	ENSGT00390000010925 #28	ENSGT00940000162910 #29	ENSGT00940000155747.g.a #31	ENSGT00390000012060 #32	ENSGT00410000025698.b #33	ENSGT00940000153433.A.f #34	ENSGT00940000154790.b.a.b #35	ENSGT00930000151014.q #36	ENSGT00940000159815 #37	ENSGT00940000155454.w.a.a	ENSGT00940000155454.w.b
Channel bull blenny	MODERN SPECIES	14	tmed8 (ENSCGOG00000016344) #7	NOXRED1 (ENSCGOG00000013560)	gskip (ENSCGOG00000013661) #10	npc2.1 (ENSCGOG00000013663) #11	isca2 (ENSCGOG00000013669) #12	EML5 (ENSCGOG00000013694) #13	ttc8 (ENSCGOG00000014174) #14	ENSCGOG00000014670 #15	ENSCGOG00000014671	ENSCGOG00000014672 #19	ENSCGOG00000014674	ENSCGOG00000014676 #20	NEK9 (ENSCGOG00000014695) #21	ENSCGOG00000015174 #20	ENSCGOG00000015177 #20	ENSCGOG00000015179 #22	ENSCGOG00000015182 #23	ENSCGOG00000015200	ENSCGOG00000015204 #24	JDP2 (ENSCGOG00000015205) #25	FLVCR2 (ENSCGOG00000015208) ##26	ERG28 (ENSCGOG00000015304) #28	ENSCGOG00000015308 #29	tgfb3 (ENSCGOG00000015422) #31	IFT43 (ENSCGOG00000015428) #32	GPATCH2L (ENSCGOG00000015440) #33	ENSCGOG00000015443	ESRRB (ENSCGOG00000015447) #34	prox2 (ENSCGOG00000015475) #35	dlst (ENSCGOG00000015478) #36	RPS6KL1 (ENSCGOG00000015734) #37
Pike perch	MODERN SPECIES	5	ENTPD5 (ENSSLUG00000009327)	bbof1 (ENSSLUG00000009317)	aldh6a1 (ENSSLUG00000008832)	gstz1 (ENSSLUG00000008752)	zgc:163014 (ENSSLUG00000008741)	ENSSLUG00000008737	ATG2B (ENSSLUG00000008502) #9	gskip (ENSSLUG00000008474) #10	npc2.1 (ENSSLUG00000008460) #11	isca2 (ENSSLUG00000008453) #12	EML5 (ENSSLUG00000008424) #13	ttc8 (ENSSLUG00000007907) #14	ENSSLUG00000007868 #15	ENSSLUG00000007860	NEK9 (ENSSLUG00000007818) #21	ENSSLUG00000007803 #22	ENSSLUG00000007796 #23	ENSSLUG00000007777 #23	ENSSLUG00000007754	ENSSLUG00000007737 #24	JDP2 (ENSSLUG00000007731) #25	FLVCR2 (ENSSLUG00000007709) #26	ERG28 (ENSSLUG00000007698) #28	ENSSLUG00000007653 #29	tgfb3 (ENSSLUG00000007633) #31	IFT43 (ENSSLUG00000007621) #32	ENSSLUG00000007616	GPATCH2L (ENSSLUG00000007608) #33	ESRRB (ENSSLUG00000007571) #34	prox2 (ENSSLUG00000007548) #35	dlst (ENSSLUG00000006732) #36
Eupecaria_C	ANCESTRAL SPECIES	8	ENSGT00940000164710	ENSGT00530000063651.b #7	ENSGT00950000183044.a.a.b	ENSGT00620000087966.a #9	ENSGT00390000009517 #10	ENSGT00390000006223 #11	ENSGT00390000005700 #12	ENSGT00940000156613 #13	ENSGT00940000156816 #14	ENSGT01030000234575.c.a.a.a.a.b.b.a #15	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.b #16	ENSGT01030000234575.c.a.a.a.a.b.b.b #19	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.a #20	ENSGT01030000234575.c.a.a.a.a.b.a.a.b ##20	ENSGT00940000156145 #21	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00940000164930.a #24	ENSGT00940000155693.a.b #25	ENSGT01030000234625.B.d.d.b.a ##26	ENSGT00390000010925 #28	ENSGT00940000162910 #29	ENSGT00940000177781 #30	ENSGT00940000155747.g.a #31	ENSGT00390000012060 #32	ENSGT00410000025698.b #33	ENSGT00940000153433.A.f #34	ENSGT00940000154790.b.a.b #35	ENSGT00930000151014.q #36	ENSGT00940000159815 #37	ENSGT00940000155454.w.a.b
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	16	ENSGT00940000164710	ENSGT00530000063651.b #7	ENSGT00950000183044.a.a.b	ENSGT00620000087966.a #9	ENSGT00390000009517 #10	ENSGT00390000006223 #11	ENSGT00390000005700 #12	ENSGT00940000156613 #13	ENSGT00940000156816 #14	ENSGT01030000234575.c.a.a.a.a.b.b.a #15	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.b #16	ENSGT01030000234575.c.a.a.a.a.b.b.b #19	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.a #20	ENSGT01030000234575.c.a.a.a.a.b.a.a.b ##20	ENSGT00940000156145 #21	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00940000164930.a #24	ENSGT00940000155693.a.b #25	ENSGT01030000234625.B.d.d.b.a ##26	ENSGT00390000010925 #28	ENSGT00940000162910 #29	ENSGT00940000155747.g.a #31	ENSGT00390000012060 #32	ENSGT00410000025698.b #33	ENSGT00940000153433.A.f #34	ENSGT00940000154790.b.a.b #35	ENSGT00930000151014.q #36	ENSGT00940000159815 #37	ENSGT00940000155454.w.a.b	ENSGT00940000155454.w.a.a
Large yellow croaker	MODERN SPECIES	495	aldh6a1 (ENSLCRG00005017273)	gstz1 (ENSLCRG00005017343)	zgc:163014 (ENSLCRG00005017345)	tmed8 (ENSLCRG00005017347) #7	ATG2B (ENSLCRG00005017352) #9	gskip (ENSLCRG00005017360) #10	npc2.1 (ENSLCRG00005017361) #11	isca2 (ENSLCRG00005017363) #12	EML5 (ENSLCRG00005017364) #13	ttc8 (ENSLCRG00005017368) #14	ENSLCRG00005017370 #16	ENSLCRG00005017371 #19	ENSLCRG00005017374 #20	ENSLCRG00005017375 ##20	NEK9 (ENSLCRG00005017376) #21	ENSLCRG00005017377 #22	MLH3 (ENSLCRG00005017378) #23	ENSLCRG00005017379 #24	JDP2 (ENSLCRG00005017390) #25	FLVCR2 (ENSLCRG00005017394) ##26	ERG28 (ENSLCRG00005017404) #28	ENSLCRG00005017425 #29	tgfb3 (ENSLCRG00005017482) #31	IFT43 (ENSLCRG00005017486) #32	GPATCH2L (ENSLCRG00005017489) #33	esrrb (ENSLCRG00005017492) #34	prox2 (ENSLCRG00005017493) #35	dlst (ENSLCRG00005017494) #36	RPS6KL1 (ENSLCRG00005017499) #37	ENSLCRG00005017501	ENSLCRG00005017502
European seabass	MODERN SPECIES	2	ENTPD5 (ENSDLAG00005011835)	BBOF1 (ENSDLAG00005011826)	aldh6a1 (ENSDLAG00005011476)	gstz1 (ENSDLAG00005033795)	zgc:163014 (ENSDLAG00005033476)	tmed8 (ENSDLAG00005010779) #7	NOXRED1 (ENSDLAG00005010764)	ENSDLAG00005010692 #9	ENSDLAG00005030109 #12	ENSDLAG00005009980 #13	ENSDLAG00005027218 #14	ENSDLAG00005009750 #15	ENSDLAG00005026725 #20	ENSDLAG00005009693 ##20	ENSDLAG00005009493 #21	ENSDLAG00005009475 #22	ENSDLAG00005009467 #23	ENSDLAG00005009432 #24	JDP2 (ENSDLAG00005031903) #25	FLVCR2 (ENSDLAG00005009385) ##26	ERG28 (ENSDLAG00005034440) #28	ENSDLAG00005009162 #29	tgfb3 (ENSDLAG00005028845) #31	IFT43 (ENSDLAG00005009135) #32	GPATCH2L (ENSDLAG00005009129) #33	ESRRB (ENSDLAG00005009106) #34	prox2 (ENSDLAG00005009097) #35	dlst (ENSDLAG00005008982) #36	RPS6KL1 (ENSDLAG00005008969) #37	ENSDLAG00005008961	ENSDLAG00005008957
Gilthead seabream	MODERN SPECIES	7	ATG2B (ENSSAUG00010005053) #9	gskip (ENSSAUG00010005050) #10	npc2.1 (ENSSAUG00010005049) #11	isca2 (ENSSAUG00010005048) #12	EML5 (ENSSAUG00010004876) #13	ttc8 (ENSSAUG00010004793) #14	ENSSAUG00010004788 #15	ENSSAUG00010004786 #16	ENSSAUG00010004784 #19	ENSSAUG00010004781 #20	ENSSAUG00010004776 #20	ENSSAUG00010004773 #20	ENSSAUG00010004771 ##20	NEK9 (ENSSAUG00010004754) #21	ENSSAUG00010004744	ENSSAUG00010004741 #22	ENSSAUG00010004735 #23	ENSSAUG00010004732	ENSSAUG00010004727 #24	JDP2 (ENSSAUG00010004723) #25	FLVCR2 (ENSSAUG00010004003) #26	ERG28 (ENSSAUG00010003977) #28	ENSSAUG00010003969 #29	ENSSAUG00010003967 #30	tgfb3 (ENSSAUG00010003964) #31	IFT43 (ENSSAUG00010003957) #32	GPATCH2L (ENSSAUG00010003952) #33	ESRRB (ENSSAUG00010003939) #34	prox2 (ENSSAUG00010003934) #35	dlst (ENSSAUG00010003627) #36	RPS6KL1 (ENSSAUG00010003609) #37
Percomorphaceae_D	ANCESTRAL SPECIES	10	ENSGT00530000063651.b #7	ENSGT00950000183044.a.a.b	ENSGT00620000087966.a #9	ENSGT00390000009517 #10	ENSGT00390000006223 #11	ENSGT00390000005700 #12	ENSGT00940000156613 #13	ENSGT00940000156816 #14	ENSGT01030000234575.c.a.a.a.a.b.b.a #15	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.b #16	ENSGT01030000234575.c.a.a.a.a.b.b.b #19	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.a #20	ENSGT01030000234575.c.a.a.a.a.b.a.a.b ##20	ENSGT00940000156145 #21	ENSGT00970000197206	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00940000164930.a #24	ENSGT00940000155693.a.b #25	ENSGT01030000234625.B.d.c.a #26	ENSGT01030000234625.B.d.d.b.a ##26	ENSGT00390000010925 #28	ENSGT00940000162910 #29	ENSGT00940000155747.g.a #31	ENSGT00390000012060 #32	ENSGT00410000025698.b #33	ENSGT00940000153433.A.f #34	ENSGT00940000154790.b.a.b #35	ENSGT00930000151014.q #36	ENSGT00940000159815 #37	ENSGT00940000155454.w.a.b
Carangaria	ANCESTRAL SPECIES	10	ENSGT00530000063651.b #7	ENSGT00950000183044.a.a.b	ENSGT00620000087966.a #9	ENSGT00390000009517 #10	ENSGT00390000006223 #11	ENSGT00390000005700 #12	ENSGT00940000156613 #13	ENSGT00940000156816 #14	ENSGT01030000234575.c.a.a.a.a.b.b.a #15	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.b #16	ENSGT01030000234575.c.a.a.a.a.b.b.b #19	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.a #20	ENSGT01030000234575.c.a.a.a.a.b.a.a.b ##20	ENSGT00940000156145 #21	ENSGT00970000197206	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00940000164930.a #24	ENSGT00940000155693.a.b #25	ENSGT01030000234625.B.d.c.a #26	ENSGT01030000234625.B.d.d.b.a ##26	ENSGT00390000010925 #28	ENSGT00940000162910 #29	ENSGT00940000155747.g.a #31	ENSGT00390000012060 #32	ENSGT00410000025698.b #33	ENSGT00940000153433.A.f #34	ENSGT00940000154790.b.a.b #35	ENSGT00930000151014.q #36	ENSGT00940000159815 #37	ENSGT00940000155454.w.a.b
Pleuronectoidei	ANCESTRAL SPECIES	5	ENSGT00940000164710	ENSGT00530000063651.b #7	ENSGT00950000183044.a.a.b	ENSGT00620000087966.a #9	ENSGT00390000009517 #10	ENSGT00390000006223 #11	ENSGT00390000005700 #12	ENSGT00940000156613 #13	ENSGT00940000156816 #14	ENSGT01030000234575.c.a.a.a.a.b.b.a #15	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.b #16	ENSGT01030000234575.c.a.a.a.a.b.b.b #19	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.a #20	ENSGT01030000234575.c.a.a.a.a.b.a.a.b ##20	ENSGT00940000156145 #21	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00940000164930.a #24	ENSGT00940000155693.a.b #25	ENSGT01030000234625.B.d.c.a #26	ENSGT01030000234625.B.d.d.b.a ##26	ENSGT00390000010925 #28	ENSGT00940000162910 #29	ENSGT00940000155747.g.a #31	ENSGT00390000012060 #32	ENSGT00410000025698.b #33	ENSGT00940000153433.A.f #34	ENSGT00940000154790.b.a.b #35	ENSGT00930000151014.q #36	ENSGT00940000159815 #37	ENSGT00940000155454.w.a.a
Tongue sole	MODERN SPECIES		ENSCSEG00000000689	OLFM4 (ENSCSEG00000000680)	RPS6KL1 (ENSCSEG00000000673) #37	dlst (ENSCSEG00000000659) #36	prox2 (ENSCSEG00000000653) #35	ESRRB (ENSCSEG00000000639) #34	GPATCH2L (ENSCSEG00000000629) #33	IFT43 (ENSCSEG00000000620) #32	tgfb3 (ENSCSEG00000000606) #31	EML5 (ENSCSEG00000000603) #13	ttc8 (ENSCSEG00000000589) #14	ENSCSEG00000000602 #15	ENSCSEG00000000586	ENSCSEG00000000582 ##20	NEK9 (ENSCSEG00000000555) #21	ENSCSEG00000000548 #22	ENSCSEG00000000543 #23	ENSCSEG00000000541 #24	JDP2 (ENSCSEG00000000539) #25	FLVCR2 (ENSCSEG00000000535) ##26	ERG28 (ENSCSEG00000000527) #28	ENSCSEG00000000524 #29	ENSCSEG00000000518	ENSCSEG00000000517 #13	ENSCSEG00000000470 #13	isca2 (ENSCSEG00000000464) #12	npc2.1 (ENSCSEG00000000425) #11	gskip (ENSCSEG00000000416) #10	ATG2B (ENSCSEG00000000401) #9	tmed8 (ENSCSEG00000000389) #7	zgc:163014 (ENSCSEG00000000383)
Turbot	MODERN SPECIES	8	zgc:163014 (ENSSMAG00000003977)	tmed8 (ENSSMAG00000003995) #7	NOXRED1 (ENSSMAG00000004004)	ENSSMAG00000004020 #9	gskip (ENSSMAG00000004108) #10	npc2.1 (ENSSMAG00000004121) #11	isca2 (ENSSMAG00000004340) #12	ENSSMAG00000004349 #13	ENSSMAG00000004472 #14	ENSSMAG00000034211 #15	ENSSMAG00000004547 #16	ENSSMAG00000030338 #19	ENSSMAG00000026527 #20	ENSSMAG00000026437 ##20	ENSSMAG00000004624 #21	ENSSMAG00000025652 #22	ENSSMAG00000004726 #23	ENSSMAG00000004752 #24	JDP2 (ENSSMAG00000004762) #25	ENSSMAG00000032870 #26	FLVCR2 (ENSSMAG00000004773) ##26	ERG28 (ENSSMAG00000031469) #28	ENSSMAG00000004813 #29	tgfb3 (ENSSMAG00000004837) #31	IFT43 (ENSSMAG00000004865) #32	GPATCH2L (ENSSMAG00000004907) #33	ESRRB (ENSSMAG00000004937) #34	prox2 (ENSSMAG00000004975) #35	dlst (ENSSMAG00000004993) #36	RPS6KL1 (ENSSMAG00000024937) #37	LRRC74A (ENSSMAG00000005061)
Carangaria_A	ANCESTRAL SPECIES	4	ENSGT00530000063651.b #7	ENSGT00950000183044.a.a.b	ENSGT00620000087966.a #9	ENSGT00390000009517 #10	ENSGT00390000006223 #11	ENSGT00390000005700 #12	ENSGT00940000156613 #13	ENSGT00940000156816 #14	ENSGT01030000234575.c.a.a.a.a.b.b.a #15	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.b #16	ENSGT01030000234575.c.a.a.a.a.b.b.b #19	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.a #20	ENSGT01030000234575.c.a.a.a.a.b.a.a.b ##20	ENSGT00940000156145 #21	ENSGT00970000197206	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00940000164930.a #24	ENSGT00940000155693.a.b #25	ENSGT01030000234625.B.d.d.b.a ##26	ENSGT00390000010925 #28	ENSGT00940000162910 #29	ENSGT00940000155747.g.a #31	ENSGT00390000012060 #32	ENSGT00410000025698.b #33	ENSGT00940000153433.A.f #34	ENSGT00940000154790.b.a.b #35	ENSGT00930000151014.q #36	ENSGT00940000159815 #37	ENSGT00940000155454.w.a.b	ENSGT00940000155454.w.a.a
Seriola	ANCESTRAL SPECIES	3	ENSGT00530000063651.b #7	ENSGT00950000183044.a.a.b	ENSGT00620000087966.a #9	ENSGT00390000009517 #10	ENSGT00390000006223 #11	ENSGT00390000005700 #12	ENSGT00940000156613 #13	ENSGT00940000156816 #14	ENSGT01030000234575.c.a.a.a.a.b.b.a #15	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.b #16	ENSGT01030000234575.c.a.a.a.a.b.b.b #19	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.a.i #20	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.a.j #20	ENSGT01030000234575.c.a.a.a.a.b.a.a.b ##20	ENSGT00940000156145 #21	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00940000164930.a #24	ENSGT00940000155693.a.b #25	ENSGT01030000234625.B.d.d.b.a ##26	ENSGT00390000010925 #28	ENSGT00940000162910 #29	ENSGT00940000155747.g.a #31	ENSGT00390000012060 #32	ENSGT00410000025698.b #33	ENSGT00940000153433.A.f #34	ENSGT00940000154790.b.a.b #35	ENSGT00930000151014.q #36	ENSGT00940000159815 #37	ENSGT00940000155454.w.a.b	ENSGT00940000155454.w.a.a
Yellowtail amberjack	MODERN SPECIES	2965	zgc:163014 (ENSSLDG00000020292)	tmed8 (ENSSLDG00000020311) #7	NOXRED1 (ENSSLDG00000020324)	ATG2B (ENSSLDG00000020346) #9	gskip (ENSSLDG00000020492) #10	npc2.1 (ENSSLDG00000020547) #11	isca2 (ENSSLDG00000020710) #12	EML5 (ENSSLDG00000020733) #13	ttc8 (ENSSLDG00000020875) #14	ENSSLDG00000020949 #15	ENSSLDG00000020965 #16	ENSSLDG00000020974 #19	ENSSLDG00000020985 #20	ENSSLDG00000021010 ##20	NEK9 (ENSSLDG00000021020) #21	ENSSLDG00000021055 #22	ENSSLDG00000021066 #23	ENSSLDG00000021099 #24	JDP2 (ENSSLDG00000021117) #25	FLVCR2 (ENSSLDG00000021129) ##26	ERG28 (ENSSLDG00000021171) #28	ENSSLDG00000021195 #29	tgfb3 (ENSSLDG00000021239) #31	IFT43 (ENSSLDG00000021252) #32	GPATCH2L (ENSSLDG00000021264) #33	ESRRB (ENSSLDG00000021283) #34	prox2 (ENSSLDG00000021320) #35	dlst (ENSSLDG00000021344) #36	RPS6KL1 (ENSSLDG00000021428) #37	ENSSLDG00000021445	OLFM4 (ENSSLDG00000021454)
Greater amberjack	MODERN SPECIES	62	tmed8 (ENSSDUG00000002850) #7	NOXRED1 (ENSSDUG00000002862)	ATG2B (ENSSDUG00000002905) #9	npc2.1 (ENSSDUG00000003084) #11	gskip (ENSSDUG00000003108) #10	isca2 (ENSSDUG00000003113) #12	EML5 (ENSSDUG00000003133) #13	ttc8 (ENSSDUG00000003280) #14	ENSSDUG00000003343 #15	ENSSDUG00000003365 #16	ENSSDUG00000003378 #19	ENSSDUG00000003387 #20	ENSSDUG00000003403 #20	ENSSDUG00000003431 ##20	NEK9 (ENSSDUG00000003442) #21	ENSSDUG00000003471 #22	ENSSDUG00000003495 #23	ENSSDUG00000003517	ENSSDUG00000003536 #24	JDP2 (ENSSDUG00000003556) #25	FLVCR2 (ENSSDUG00000003576) ##26	ERG28 (ENSSDUG00000003602) #28	ENSSDUG00000003617 #29	tgfb3 (ENSSDUG00000003655) #31	IFT43 (ENSSDUG00000003660) #32	GPATCH2L (ENSSDUG00000003664) #33	ESRRB (ENSSDUG00000003682) #34	prox2 (ENSSDUG00000003704) #35	dlst (ENSSDUG00000003729) #36	RPS6KL1 (ENSSDUG00000003829) #37	ENSSDUG00000003867
Barramundi perch	MODERN SPECIES	110	zgc:163014 (ENSLCAG00010020450)	tmed8 (ENSLCAG00010020440) #7	NOXRED1 (ENSLCAG00010020432)	ATG2B (ENSLCAG00010020189) #9	gskip (ENSLCAG00010020154) #10	npc2.1 (ENSLCAG00010020153) #11	isca2 (ENSLCAG00010020151) #12	EML5 (ENSLCAG00010020149) #13	ttc8 (ENSLCAG00010020110) #14	ENSLCAG00010020089 #15	ENSLCAG00010020083 #19	ENSLCAG00010020079 #20	ENSLCAG00010020076 #20	NEK9 (ENSLCAG00010020050) #21	ENSLCAG00010020031	ENSLCAG00010020028 #22	ENSLCAG00010019998 #23	ENSLCAG00010019980 #24	JDP2 (ENSLCAG00010019974) #25	FLVCR2 (ENSLCAG00010019962) ##26	ERG28 (ENSLCAG00010019950) #28	ENSLCAG00010019793 #29	tgfb3 (ENSLCAG00010019758) #31	IFT43 (ENSLCAG00010019754) #32	GPATCH2L (ENSLCAG00010019744) #33	ESRRB (ENSLCAG00010019726) #34	prox2 (ENSLCAG00010019720) #35	dlst (ENSLCAG00010019684) #36	RPS6KL1 (ENSLCAG00010019672) #37	ENSLCAG00010019662	LRRC74A (ENSLCAG00010019651)
Anabantaria	ANCESTRAL SPECIES	10	ENSGT00530000063651.b #7	ENSGT00950000183044.a.a.b	ENSGT00620000087966.a #9	ENSGT00390000009517 #10	ENSGT00390000006223 #11	ENSGT00390000005700 #12	ENSGT00940000156613 #13	ENSGT00940000156816 #14	ENSGT01030000234575.c.a.a.a.a.b.b.a #15	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.b #16	ENSGT01030000234575.c.a.a.a.a.b.b.b #19	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.a #20	ENSGT01030000234575.c.a.a.a.a.b.a.a.b ##20	ENSGT00940000156145 #21	ENSGT00970000197206	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00940000164930.a #24	ENSGT00940000155693.a.b #25	ENSGT01030000234625.B.d.c.a #26	ENSGT01030000234625.B.d.d.b.a ##26	ENSGT00390000010925 #28	ENSGT00940000162910 #29	ENSGT00940000155747.g.a #31	ENSGT00390000012060 #32	ENSGT00410000025698.b #33	ENSGT00940000153433.A.f #34	ENSGT00940000154790.b.a.b #35	ENSGT00930000151014.q #36	ENSGT00940000159815 #37	ENSGT00940000155454.w.a.b
Zig-zag eel	MODERN SPECIES	14	NOXRED1 (ENSMAMG00000004903)	ENSMAMG00000004929 #9	gskip (ENSMAMG00000026129) #10	npc2.1 (ENSMAMG00000005085) #11	isca2 (ENSMAMG00000005486) #12	ENSMAMG00000005497 #13	ENSMAMG00000005570 #14	ENSMAMG00000005642 #15	ENSMAMG00000026483 #16	ENSMAMG00000005684 #19	ENSMAMG00000028014	ENSMAMG00000005693 #20	ENSMAMG00000005703 #20	ENSMAMG00000005739 ##20	ENSMAMG00000005772 #21	ACYP1 (ENSMAMG00000025112) #22	ENSMAMG00000005799 #23	ENSMAMG00000005809 #24	JDP2 (ENSMAMG00000005831) #25	FLVCR2 (ENSMAMG00000005852) #26	ENSMAMG00000027957 ##26	ERG28 (ENSMAMG00000027458) #28	ENSMAMG00000005926 #29	tgfb3 (ENSMAMG00000005975) #31	IFT43 (ENSMAMG00000005983) #32	GPATCH2L (ENSMAMG00000005997) #33	ESRRB (ENSMAMG00000006014) #34	prox2 (ENSMAMG00000006036) #35	dlst (ENSMAMG00000025145) #36	RPS6KL1 (ENSMAMG00000006095) #37	ENSMAMG00000006115
Anabantoidei	ANCESTRAL SPECIES	9	ENSGT00940000164710	ENSGT00530000063651.b #7	ENSGT00950000183044.a.a.b	ENSGT00620000087966.a #9	ENSGT00390000009517 #10	ENSGT00390000006223 #11	ENSGT00390000005700 #12	ENSGT00940000156613 #13	ENSGT00940000156816 #14	ENSGT01030000234575.c.a.a.a.a.b.b.a #15	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.b #16	ENSGT01030000234575.c.a.a.a.a.b.b.b #19	ENSGT01030000234575.c.a.a.a.a.b.a.a.a.a #20	ENSGT00940000156145 #21	ENSGT00970000197206	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00940000164930.a #24	ENSGT00940000155693.a.b #25	ENSGT01030000234625.B.d.c.a #26	ENSGT01030000234625.B.d.d.b.a ##26	ENSGT00390000010925 #28	ENSGT00940000162910 #29	ENSGT00940000155747.g.a #31	ENSGT00390000012060 #32	ENSGT00410000025698.b #33	ENSGT00940000153433.A.f #34	ENSGT00940000154790.b.a.b #35	ENSGT00930000151014.q #36	ENSGT00940000159815 #37	ENSGT00940000155454.w.a.b
Climbing perch	MODERN SPECIES	3	ENSATEG00000000615 #9	gskip (ENSATEG00000000818) #10	npc2.1 (ENSATEG00000025317) #11	isca2 (ENSATEG00000000858) #12	ENSATEG00000000968 #13	ENSATEG00000001185 #14	ENSATEG00000001153 #15	ENSATEG00000027730 #19	ENSATEG00000001235 #16	ENSATEG00000027230 #19	ENSATEG00000001274 #20	ENSATEG00000001247 #19	ENSATEG00000001315 #21	ENSATEG00000026844	ENSATEG00000001325	ACYP1 (ENSATEG00000025454) #22	ENSATEG00000001351 #23	JDP2 (ENSATEG00000001383) #25	ENSATEG00000001397 #26	FLVCR2 (ENSATEG00000001418) ##26	ERG28 (ENSATEG00000001439) #28	ENSATEG00000001482 #29	tgfb3 (ENSATEG00000001502) #31	IFT43 (ENSATEG00000001549) #32	tgfb3 (ENSATEG00000006139) #31	GPATCH2L (ENSATEG00000001600) #33	ESRRB (ENSATEG00000001610) #34	prox2 (ENSATEG00000001654) #35	dlst (ENSATEG00000001662) #36	RPS6KL1 (ENSATEG00000001668) #37	ENSATEG00000029867
Siamese fighting fish	MODERN SPECIES	12	bbof1 (ENSBSLG00000025582)	aldh6a1 (ENSBSLG00000025453)	gstz1 (ENSBSLG00000025003)	tmed8 (ENSBSLG00000024977) #7	ATG2B (ENSBSLG00000024902) #9	gskip (ENSBSLG00000024891) #10	isca2 (ENSBSLG00000024881) #12	npc2.1 (ENSBSLG00000024862) #11	ENSBSLG00000024748 #13	ttc8 (ENSBSLG00000024681) #14	ENSBSLG00000024673 #15	ENSBSLG00000024646 #20	ENSBSLG00000024629 #20	ENSBSLG00000024625	NEK9 (ENSBSLG00000024595) #21	ENSBSLG00000024567 #22	ENSBSLG00000024442 #24	JDP2 (ENSBSLG00000024411) #25	FLVCR2 (ENSBSLG00000024264) ##26	ERG28 (ENSBSLG00000024257) #28	ENSBSLG00000024202 #29	tgfb3 (ENSBSLG00000024183) #31	IFT43 (ENSBSLG00000024176) #32	ENSBSLG00000024171	ESRRB (ENSBSLG00000024105) #34	prox2 (ENSBSLG00000024093) #35	dlst (ENSBSLG00000024073) #36	RPS6KL1 (ENSBSLG00000024065) #37	ENSBSLG00000023997	ENSBSLG00000023985	ENSBSLG00000023983
Tiger tail seahorse	MODERN SPECIES	491													ENSHCOG00000013815 #19	ENSHCOG00000013821 #20	NEK9 (ENSHCOG00000013844) #21	ENSHCOG00000013850 #22	ENSHCOG00000013862 #23	ENSHCOG00000013914 #23	ENSHCOG00000013934 #24	JDP2 (ENSHCOG00000013941) #25	ENSHCOG00000013945 #26	FLVCR2 (ENSHCOG00000013964) #26	ERG28 (ENSHCOG00000013983) #28	ENSHCOG00000013993 #29	ENSHCOG00000014009 #30	tgfb3 (ENSHCOG00000014030) #31	IFT43 (ENSHCOG00000014060) #32	thoc7 (ENSHCOG00000014078)	ENSHCOG00000014085	ESRRB (ENSHCOG00000014101) #34	prox2 (ENSHCOG00000014117) #35
Pinecone sodierfish	MODERN SPECIES	14	zgc:163014 (ENSMMDG00005009952)	tmed8 (ENSMMDG00005009959) #7	NOXRED1 (ENSMMDG00005009966)	ENSMMDG00005009972	ATG2B (ENSMMDG00005010017) #9	gskip (ENSMMDG00005010925) #10	npc2.1 (ENSMMDG00005010926) #11	isca2 (ENSMMDG00005010927) #12	EML5 (ENSMMDG00005010928) #13	ttc8 (ENSMMDG00005010931) #14	ENSMMDG00005010955 #19	ENSMMDG00005010959	ENSMMDG00005010962 ##20	NEK9 (ENSMMDG00005010969) #21	ENSMMDG00005011011	ENSMMDG00005011012 #22	MLH3 (ENSMMDG00005011014) #23	ENSMMDG00005011024 #24	JDP2 (ENSMMDG00005011026) #25	FLVCR2 (ENSMMDG00005011033) ##26	ERG28 (ENSMMDG00005011058) #28	ENSMMDG00005011064 #29	tgfb3 (ENSMMDG00005011068) #31	IFT43 (ENSMMDG00005011069) #32	GPATCH2L (ENSMMDG00005011070) #33	ESRRB (ENSMMDG00005011073) #34	prox2 (ENSMMDG00005011116) #35	dlst (ENSMMDG00005011127) #36	RPS6KL1 (ENSMMDG00005011406) #37	ENSMMDG00005011423	ENSMMDG00005011425
Cod	MODERN SPECIES	18	gstz1 (ENSGMOG00000015791)	zgc:163014 (ENSGMOG00000024580)	tmed8 (ENSGMOG00000015776) #7	NOXRED1 (ENSGMOG00000025654)	ENSGMOG00000015676 #9	gskip (ENSGMOG00000015670) #10	npc2.1 (ENSGMOG00000015657) #11	isca2 (ENSGMOG00000015643) #12	ENSGMOG00000015571 #13	ENSGMOG00000015545 #14	ENSGMOG00000024654 #19	ENSGMOG00000026373	ENSGMOG00000023306	NEK9 (ENSGMOG00000015498) #21	ENSGMOG00000026286	ENSGMOG00000024862 #22	ENSGMOG00000023194 #23	ENSGMOG00000027603 #24	JDP2 (ENSGMOG00000015382) #25	FLVCR2 (ENSGMOG00000024949) #26	ERG28 (ENSGMOG00000015353) #28	ENSGMOG00000015266 #29	tgfb3 (ENSGMOG00000015251) #31	IFT43 (ENSGMOG00000015229) #32	ENSGMOG00000032252	GPATCH2L (ENSGMOG00000034598) #33	ESRRB (ENSGMOG00000015180) #34	prox2 (ENSGMOG00000015166) #35	dlst (ENSGMOG00000015133) #36	RPS6KL1 (ENSGMOG00000015101) #37	ENSGMOG00000015004
Protacanthopterygii	ANCESTRAL SPECIES	48	ENSGT01100000263540.A.b.a.a	ENSGT00940000154427.A	ENSGT00940000156110.c.a	ENSGT00390000006580	ENSGT00940000164710	ENSGT00530000063651.b #7	ENSGT00950000183044.a.a.b	ENSGT00620000087966.a #9	ENSGT00390000009517 #10	ENSGT00390000006223 #11	ENSGT00390000005700 #12	ENSGT00940000156613 #13	ENSGT00940000156816 #14	ENSGT00940000156145 #21	ENSGT00940000160947	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00940000164930.a #24	ENSGT00940000155693.a.b #25	ENSGT01030000234625.B.d.c.a #26	ENSGT00390000010925 #28	ENSGT00940000162910 #29	ENSGT00940000155747.g.a #31	ENSGT00390000012060 #32	ENSGT00410000025698.b #33	ENSGT00940000153433.A.f #34	ENSGT00940000154790.b.a.b #35	ENSGT00930000151014.q #36	ENSGT00940000159815 #37	ENSGT00940000155454.w.a	ENSGT00940000155454.w.b
Salmoninae	ANCESTRAL SPECIES	21	ENSGT00510000048375.f	ENSGT00940000159998.f	ENSGT00390000015152.d	ENSGT01100000263540.A.b.a.a.a	ENSGT00940000156110.c.a.d	ENSGT00390000006580.j	ENSGT00940000164710.e	ENSGT00530000063651.b.d #7	ENSGT00620000087966.a.b.a #9	ENSGT00390000009517.v #10	ENSGT00390000005700.o.a #12	ENSGT00940000156613.e #13	ENSGT00940000156816.a #14	ENSGT01020000230338.a.b.b.b.d.b	ENSGT00990000209870	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00550000074954.o.b	ENSGT00940000164930.a.a #24	ENSGT00940000155693.a.b.j #25	ENSGT01030000234625.B.d.c.a.f #26	ENSGT00390000010925.f #28	ENSGT00940000162910.p #29	ENSGT00940000155747.g.a.e #31	ENSGT00390000012060.c.a #32	ENSGT00410000025698.b #33	ENSGT00940000153433.A.f.b #34	ENSGT00940000154790.b.a.b.c #35	ENSGT00930000151014.q.e #36	ENSGT00940000159815.c #37	ENSGT00940000155454.w.b
Huchen	MODERN SPECIES	420	ngb (ENSHHUG00000026400)	FAM161B (ENSHHUG00000026394)	coq6 (ENSHHUG00000026312)	ENTPD5 (ENSHHUG00000026295)	aldh6a1 (ENSHHUG00000026286)	gstz1 (ENSHHUG00000026240)	zgc:163014 (ENSHHUG00000026205)	tmed8 (ENSHHUG00000026199) #7	ATG2B (ENSHHUG00000026180) #9	ENSHHUG00000026174	isca2 (ENSHHUG00000026165) #12	EML5 (ENSHHUG00000026149) #13	ttc8 (ENSHHUG00000026093) #14	ENSHHUG00000026088	ENSHHUG00000026078	ENSHHUG00000026072 #22	MLH3 (ENSHHUG00000026050) #23	TMED10 (ENSHHUG00000026046)	ENSHHUG00000026045 #24	JDP2 (ENSHHUG00000026044) #25	FLVCR2 (ENSHHUG00000026036) #26	ERG28 (ENSHHUG00000026028) #28	ENSHHUG00000026025 #29	ENSHHUG00000026013	ENSHHUG00000026011
Salmoninae_a	ANCESTRAL SPECIES	36	ENSGT00510000048375.f	ENSGT00940000159998.f	ENSGT00390000015152.d	ENSGT01100000263540.A.b.a.a.a	ENSGT00940000156110.c.a.d	ENSGT00390000006580.j	ENSGT00940000164710.e	ENSGT00530000063651.b.d #7	ENSGT00620000087966.a.b.a #9	ENSGT00390000009517.v #10	ENSGT00390000005700.o.a #12	ENSGT00940000156613.e #13	ENSGT00940000156816.a #14	ENSGT01020000230338.a.b.b.b.d.b	ENSGT00990000209870	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00550000074954.o.b	ENSGT00940000164930.a.a #24	ENSGT00940000155693.a.b.j #25	ENSGT01030000234625.B.d.c.a.f #26	ENSGT00390000010925.f #28	ENSGT00940000162910.p #29	ENSGT00940000155747.g.a.e #31	ENSGT00390000012060.c.a #32	ENSGT00410000025698.b #33	ENSGT00940000153433.A.f.b #34	ENSGT00940000154790.b.a.b.c #35	ENSGT00930000151014.q.e #36	ENSGT00940000159815.c #37	ENSGT00940000155454.w.b
Oncorhynchus	ANCESTRAL SPECIES	36	ENSGT00940000159998.f	ENSGT00390000015152.d	ENSGT01100000263540.A.b.a.a.a	ENSGT00940000156110.c.a.d	ENSGT00390000006580.j	ENSGT00940000164710.e	ENSGT00530000063651.b.d #7	ENSGT00620000087966.a.b.a #9	ENSGT00390000005700.o.a #12	ENSGT00940000156613.e #13	ENSGT00940000156816.a #14	ENSGT01020000230338.a.b.b.b.d.a	ENSGT01020000230338.a.b.b.b.d.b	ENSGT00970000198028.a	ENSGT00940000160947	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00550000074954.o.b	ENSGT00940000164930.a.a #24	ENSGT00940000155693.a.b.j #25	ENSGT01030000234625.B.d.c.a.f #26	ENSGT00940000162910.p #29	ENSGT01000000219381	ENSGT00940000155747.g.a.e #31	ENSGT00390000012060.c.a #32	ENSGT00410000025698.b #33	ENSGT00940000153433.A.f.b #34	ENSGT00940000154790.b.a.b.c #35	ENSGT00930000151014.q.e #36	ENSGT00940000159815.c #37	ENSGT00940000155454.w.b
Oncorhynchus_a	ANCESTRAL SPECIES	33	ENSGT00940000159998.f	ENSGT00390000015152.d	ENSGT01100000263540.A.b.a.a.a	ENSGT00940000156110.c.a.d	ENSGT00390000006580.j	ENSGT00940000164710.e	ENSGT00530000063651.b.d #7	ENSGT00620000087966.a.b.a #9	ENSGT00390000005700.o.a #12	ENSGT00940000156613.e #13	ENSGT00940000156816.a #14	ENSGT01020000230338.a.b.b.b.d.a	ENSGT01020000230338.a.b.b.b.d.b	ENSGT00970000198028.a	ENSGT00940000160947	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00550000074954.o.b	ENSGT00940000164930.a.a #24	ENSGT00940000155693.a.b.j #25	ENSGT01030000234625.B.d.c.a.f #26	ENSGT01000000219381	ENSGT00940000155747.g.a.e #31	ENSGT00390000012060.c.a #32	ENSGT00410000025698.b #33	ENSGT00940000153433.A.f.b #34	ENSGT00940000154790.b.a.b.c #35	ENSGT00930000151014.q.e #36	ENSGT00940000159815.c #37	ENSGT00940000155454.w.b	ENSGT00940000159057
Chinook salmon	MODERN SPECIES	32	FAM161B (ENSOTSG00005005962)	coq6 (ENSOTSG00005003839)	ENTPD5 (ENSOTSG00005002566)	aldh6a1 (ENSOTSG00005002555)	gstz1 (ENSOTSG00005002552)	zgc:163014 (ENSOTSG00005002550)	tmed8 (ENSOTSG00005002549) #7	ATG2B (ENSOTSG00005002527) #9	isca2 (ENSOTSG00005002508) #12	EML5 (ENSOTSG00005002496) #13	ttc8 (ENSOTSG00005002378) #14	ENSOTSG00005002352	ENSOTSG00005002350	ENSOTSG00005002345	ENSOTSG00005002340	ENSOTSG00005002338 #22	MLH3 (ENSOTSG00005002258) #23	TMED10 (ENSOTSG00005002120)	ENSOTSG00005002118 #24	JDP2 (ENSOTSG00005002116) #25	FLVCR2 (ENSOTSG00005002113) #26	ENSOTSG00005002110	tgfb3 (ENSOTSG00005002108) #31	IFT43 (ENSOTSG00005002104) #32	ENSOTSG00005002098	GPATCH2L (ENSOTSG00005002096) #33	ESRRB (ENSOTSG00005001745) #34	prox2 (ENSOTSG00005001730) #35	dlst (ENSOTSG00005001317) #36	RPS6KL1 (ENSOTSG00005001308) #37	ENSOTSG00005001307
Coho salmon	MODERN SPECIES	5	FAM161B (ENSOKIG00005007367)	coq6 (ENSOKIG00005007414)	ENTPD5 (ENSOKIG00005008307)	ENSOKIG00005008941	gstz1 (ENSOKIG00005008945)	ENSOKIG00005008955	zgc:163014 (ENSOKIG00005008992)	tmed8 (ENSOKIG00005009028) #7	ATG2B (ENSOKIG00005009075) #9	ISCA2 (ENSOKIG00005009261) #12	EML5 (ENSOKIG00005009323) #13	ttc8 (ENSOKIG00005009376) #14	ENSOKIG00005009457	ENSOKIG00005009471	ENSOKIG00005009478	ENSOKIG00005009487 #22	MLH3 (ENSOKIG00005009504) #23	TMED10 (ENSOKIG00005009588)	ENSOKIG00005009625 #24	JDP2 (ENSOKIG00005009628) #25	FLVCR2 (ENSOKIG00005009643) #26	ENSOKIG00005009674	tgfb3 (ENSOKIG00005009688) #31	IFT43 (ENSOKIG00005009701) #32	GPATCH2L (ENSOKIG00005009723) #33	ESRRB (ENSOKIG00005009753) #34	prox2 (ENSOKIG00005009976) #35	dlst (ENSOKIG00005009991) #36	RPS6KL1 (ENSOKIG00005010037) #37	ENSOKIG00005010052	ENSOKIG00005010072
Rainbow trout	MODERN SPECIES	17	coq6 (ENSOMYG00000019280)	ENTPD5 (ENSOMYG00000018985)	aldh6a1 (ENSOMYG00000018937)	gstz1 (ENSOMYG00000037854)	zgc:163014 (ENSOMYG00000037772)	tmed8 (ENSOMYG00000037735) #7	ENSOMYG00000037672 #9	ENSOMYG00000037565 #12	ENSOMYG00000036851 #13	ENSOMYG00000036656 #14	ENSOMYG00000061376	ENSOMYG00000036612	ENSOMYG00000036589	ENSOMYG00000036584	ENSOMYG00000036569	ENSOMYG00000051866 #22	ENSOMYG00000036407 #23	tmeda (ENSOMYG00000036499)	ENSOMYG00000068853 #24	JDP2 (ENSOMYG00000036373) #25	FLVCR2 (ENSOMYG00000035816) #26	ENSOMYG00000035729 #29	ENSOMYG00000073372	ENSOMYG00000054625	tgfb3 (ENSOMYG00000035710) #31	IFT43 (ENSOMYG00000035697) #32	GPATCH2L (ENSOMYG00000035677) #33	ESRRB (ENSOMYG00000035608) #34	prox2 (ENSOMYG00000035591) #35	dlst (ENSOMYG00000035571) #36	RPS6KL1 (ENSOMYG00000035555) #37
Salmo	ANCESTRAL SPECIES	11	ENSGT00390000015152.d	ENSGT01100000263540.A.b.a.a.a	ENSGT00940000156110.c.a.d	ENSGT00390000006580.j	ENSGT00940000164710.e	ENSGT00530000063651.b.d #7	ENSGT00620000087966.a.b.a #9	ENSGT00390000009517.v #10	ENSGT00990000213299	ENSGT00390000005700.o.a #12	ENSGT00940000156613.e #13	ENSGT00940000156816.a #14	ENSGT01020000230338.a.b.b.b.d.a	ENSGT00970000198028	ENSGT00990000209870	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00550000074954.o.b	ENSGT00940000164930.a.a #24	ENSGT00940000155693.a.b.j #25	ENSGT01030000234625.B.d.c.a.f #26	ENSGT00390000010925.f #28	ENSGT00940000162910.p #29	ENSGT00940000155747.g.a.e #31	ENSGT00390000012060.c.a #32	ENSGT00410000025698.b #33	ENSGT00940000153433.A.f.b #34	ENSGT00940000154790.b.a.b.c #35	ENSGT00930000151014.q.e #36	ENSGT00940000159815.c #37	ENSGT00940000155454.w.b
Atlantic salmon	MODERN SPECIES	28	coq6 (ENSSSAG00000005640)	ENTPD5 (ENSSSAG00000005188)	aldh6a1 (ENSSSAG00000005146)	gstz1 (ENSSSAG00000005138)	zgc:163014 (ENSSSAG00000005118)	tmed8 (ENSSSAG00000116858) #7	ENSSSAG00000003147 #9	gskip (ENSSSAG00000002968) #10	ENSSSAG00000002964	isca2 (ENSSSAG00000002913) #12	ENSSSAG00000002521 #13	ENSSSAG00000002637 #14	ENSSSAG00000002240	ENSSSAG00000002188	ENSSSAG00000056119	ENSSSAG00000117697 #22	ENSSSAG00000056104 #23	ENSSSAG00000056092	ENSSSAG00000056089 #24	JDP2 (ENSSSAG00000056082) #25	FLVCR2 (ENSSSAG00000055391) #26	ERG28 (ENSSSAG00000055364) #28	ENSSSAG00000055351 #29	tgfb3 (ENSSSAG00000055340) #31	ift43 (ENSSSAG00000055332) #32	gpatch2l (ENSSSAG00000055320) #33	ESRRB (ENSSSAG00000060549) #34	prox2 (ENSSSAG00000055279) #35	dlst (ENSSSAG00000055262) #36	RPS6KL1 (ENSSSAG00000055254) #37	ENSSSAG00000055246
River trout	MODERN SPECIES	17	ENTPD5 (ENSSTUG00000008477)	aldh6a1 (ENSSTUG00000008658)	gstz1 (ENSSTUG00000008684)	zgc:163014 (ENSSTUG00000008702)	tmed8 (ENSSTUG00000008749) #7	ATG2B (ENSSTUG00000008758) #9	gskip (ENSSTUG00000008914) #10	ENSSTUG00000008918	isca2 (ENSSTUG00000008934) #12	EML5 (ENSSTUG00000008974) #13	ttc8 (ENSSTUG00000009051) #14	ENSSTUG00000009278	ENSSTUG00000009300	NEK9 (ENSSTUG00000009309) #21	ENSSTUG00000009343	ENSSTUG00000009354 #22	MLH3 (ENSSTUG00000009363) #23	ENSSTUG00000009410	ENSSTUG00000009451 #24	JDP2 (ENSSTUG00000009656) #25	FLVCR2 (ENSSTUG00000009668) #26	ERG28 (ENSSTUG00000009730) #28	ENSSTUG00000009741	tgfb3 (ENSSTUG00000009751) #31	IFT43 (ENSSTUG00000009766) #32	GPATCH2L (ENSSTUG00000009776) #33	ESRRB (ENSSTUG00000009786) #34	prox2 (ENSSTUG00000009883) #35	dlst (ENSSTUG00000009889) #36	RPS6KL1 (ENSSTUG00000009935) #37	ENSSTUG00000009964
Northern pike	MODERN SPECIES	14	bbof1 (ENSELUG00000007976)	aldh6a1 (ENSELUG00000007951)	gstz1 (ENSELUG00000032439)	zgc:163014 (ENSELUG00000007863)	tmed8 (ENSELUG00000007850) #7	NOXRED1 (ENSELUG00000007795)	ATG2B (ENSELUG00000007766) #9	gskip (ENSELUG00000029432) #10	npc2 (ENSELUG00000007713) #11	isca2 (ENSELUG00000007638) #12	EML5 (ENSELUG00000007606) #13	ttc8 (ENSELUG00000007542) #14	ENSELUG00000028501	NEK9 (ENSELUG00000007481) #21	ENSELUG00000007416	ENSELUG00000007437 #22	MLH3 (ENSELUG00000007401) #23	tmed10 (ENSELUG00000032761)	ENSELUG00000007336 #24	JDP2 (ENSELUG00000007321) #25	FLVCR2 (ENSELUG00000007300) #26	ERG28 (ENSELUG00000007282) #28	ENSELUG00000007250 #29	tgfb3 (ENSELUG00000007196) #31	IFT43 (ENSELUG00000007156) #32	ENSELUG00000030364	GPATCH2L (ENSELUG00000000253) #33	ESRRB (ENSELUG00000007077) #34	prox2 (ENSELUG00000007022) #35	dlst (ENSELUG00000006987) #36	RPS6KL1 (ENSELUG00000006942) #37
Otomorpha	ANCESTRAL SPECIES	294														ENSGT00940000156145 #21	ENSGT00940000160947	ENSGT00390000011103.B #22	ENSGT00940000164930.a #24	ENSGT00940000155693.a.b #25	ENSGT01030000234625.B.d.c.a #26	ENSGT00390000010925 #28	ENSGT00940000162910 #29	ENSGT00940000155747.h ##31	ENSGT00940000162939	ENSGT00940000155747.g.a #31	ENSGT00390000012060 #32	ENSGT00410000025698.b #33	ENSGT00940000153433.A.e ##34	ENSGT00940000154790.b.a.b #35	ENSGT00930000151014.q #36	ENSGT00940000159815 #37	ENSGT00940000155454.w.a
Otophysi	ANCESTRAL SPECIES	252														ENSGT00940000156145 #21	ENSGT00940000160947	ENSGT00390000011103.B #22	ENSGT00940000164930.a #24	ENSGT00940000155693.a.b #25	ENSGT01030000234625.B.d.c.a #26	ENSGT00390000010925 #28	ENSGT00940000162910 #29	ENSGT00940000155747.h ##31	ENSGT00940000177781 #30	ENSGT00940000155747.g.a #31	ENSGT00390000012060 #32	ENSGT00410000025698.b #33	ENSGT00940000153433.A.e ##34	ENSGT00940000154790.b.a.b #35	ENSGT00930000151014.q #36	ENSGT00940000159815 #37	ENSGT00940000155454.w.a
Characiphysae	ANCESTRAL SPECIES	38	ENSGT00550000074847	ENSGT00390000006979.b	ENSGT00730000112193	ENSGT00940000155490.b	ENSGT00390000006240	ENSGT00390000011802	ENSGT01080000258187	ENSGT01030000234834	ENSGT00390000014092	ENSGT00390000017610.a	ENSGT00940000156816 #14	ENSGT01020000230338.a.b.b.b	ENSGT00390000018386	ENSGT00940000156145 #21	ENSGT00940000160947	ENSGT00390000011103.B #22	ENSGT00940000164930.a #24	ENSGT00940000155693.a.b #25	ENSGT01030000234625.B.d.c.a #26	ENSGT00390000010925 #28	ENSGT00940000162910 #29	ENSGT00940000177781 #30	ENSGT00940000155747.g.a #31	ENSGT00390000012060 #32	ENSGT00410000025698.b #33	ENSGT00940000153433.A.e ##34	ENSGT00940000154790.b.a.b #35	ENSGT00930000151014.q #36	ENSGT00940000159815 #37	ENSGT00940000155454.w.a	ENSGT00940000155454.w.b
Characiphysae_b	ANCESTRAL SPECIES	39	ENSGT00550000074847	ENSGT00390000006979.b	ENSGT00730000112193	ENSGT00940000155490.b	ENSGT00390000006240	ENSGT00390000011802	ENSGT01080000258187	ENSGT01030000234834	ENSGT00390000014092	ENSGT00390000017610.a	ENSGT00940000156816 #14	ENSGT01020000230338.a.b.b.b	ENSGT00390000018386	ENSGT00940000156145 #21	ENSGT00940000160947	ENSGT00390000011103.B #22	ENSGT00940000164930.a #24	ENSGT00940000155693.a.b #25	ENSGT01030000234625.B.d.c.a #26	ENSGT00390000010925 #28	ENSGT00940000162910 #29	ENSGT00940000177781 #30	ENSGT00940000155747.g.a #31	ENSGT00390000012060 #32	ENSGT00410000025698.b #33	ENSGT00940000153433.A.e ##34	ENSGT00940000154790.b.a.b #35	ENSGT00930000151014.q #36	ENSGT00940000159815 #37	ENSGT00940000155454.w.a	ENSGT00940000155454.w.b
Characoidei	ANCESTRAL SPECIES	41	ENSGT00550000074847	ENSGT00390000006979.b	ENSGT00730000112193	ENSGT00940000155490.b	ENSGT00390000006240	ENSGT00390000011802	ENSGT01080000258187	ENSGT01030000234834	ENSGT00390000014092	ENSGT00390000017610.a	ENSGT00940000156816 #14	ENSGT01020000230338.a.b.b.b	ENSGT00390000018386	ENSGT00940000156145 #21	ENSGT00940000160947	ENSGT00390000011103.B #22	ENSGT00940000164930.a #24	ENSGT00940000155693.a.b #25	ENSGT01030000234625.B.d.c.a #26	ENSGT00390000010925 #28	ENSGT00940000162910 #29	ENSGT00940000155747.g.a #31	ENSGT00390000012060 #32	ENSGT00410000025698.b #33	ENSGT00940000153433.A.e ##34	ENSGT00940000154790.b.a.b #35	ENSGT00930000151014.q #36	ENSGT00940000159815 #37	ENSGT00940000155454.w.a	ENSGT00940000155454.w.b	ENSGT00940000154297.A.g.a
Mexicana tetra	MODERN SPECIES	24	atxn3 (ENSAMXG00000035805)	SERPINA10 (ENSAMXG00000036511)	DDX24 (ENSAMXG00000014635)	OTUB2 (ENSAMXG00000014624)	ENSAMXG00000032373	asb2b (ENSAMXG00000014614)	PRIMA1 (ENSAMXG00000033227)	UNC79 (ENSAMXG00000014598)	BTBD7 (ENSAMXG00000014584)	UBR7 (ENSAMXG00000014579)	ttc8 (ENSAMXG00000014575) #14	ENSAMXG00000014568	ndc80 (ENSAMXG00000014557)	NEK9 (ENSAMXG00000014545) #21	ENSAMXG00000040113	ENSAMXG00000014521 #22	ENSAMXG00000014513 #24	JDP2 (ENSAMXG00000034514) #25	FLVCR2 (ENSAMXG00000014488) ##26	ERG28 (ENSAMXG00000014479) #28	ENSAMXG00000014451 #29	tgfb3 (ENSAMXG00000014435) #31	IFT43 (ENSAMXG00000014420) #32	GPATCH2L (ENSAMXG00000014403) #33	esrrb (ENSAMXG00000034832) ##34	prox2 (ENSAMXG00000014376) #35	dlst (ENSAMXG00000014365) #36	RPS6KL1 (ENSAMXG00000014346) #37	ENSAMXG00000014329	ENSAMXG00000035002	ENSAMXG00000014315
Red-bellied piranha	MODERN SPECIES	16	atxn3 (ENSPNAG00000008945)	SERPINA10 (ENSPNAG00000001266)	DDX24 (ENSPNAG00000008956)	OTUB2 (ENSPNAG00000008973)	asb2b (ENSPNAG00000008991)	PRIMA1 (ENSPNAG00000008997)	UNC79 (ENSPNAG00000009251)	ENSPNAG00000009291	BTBD7 (ENSPNAG00000009341)	UBR7 (ENSPNAG00000001310)	ttc8 (ENSPNAG00000009394) #14	ENSPNAG00000009421	ndc80 (ENSPNAG00000009495)	NEK9 (ENSPNAG00000009538) #21	ENSPNAG00000009556	ENSPNAG00000009582 #22	ENSPNAG00000009597 #24	JDP2 (ENSPNAG00000009605) #25	FLVCR2 (ENSPNAG00000009615) #26	ERG28 (ENSPNAG00000009627) #28	ENSPNAG00000009662 #29	tgfb3 (ENSPNAG00000001327) #31	IFT43 (ENSPNAG00000009704) #32	GPATCH2L (ENSPNAG00000009720) #33	esrrb (ENSPNAG00000006181) ##34	dlst (ENSPNAG00000009820) #36	ENSPNAG00000001345 #37	prox2 (ENSPNAG00000009888) #35	CCR6 (ENSPNAG00000009905)	ENSPNAG00000006678	ENSPNAG00000001354
Electric eel	MODERN SPECIES	468															ENSEEEG00000020709	ENSEEEG00000020710 #22	ENSEEEG00000020711	ENSEEEG00000020712 #24	JDP2 (ENSEEEG00000020713) #25	FLVCR2 (ENSEEEG00000020716) #26	ERG28 (ENSEEEG00000020760) #28	ENSEEEG00000020762 #29	ENSEEEG00000020763 #30	tgfb3 (ENSEEEG00000020765) #31	IFT43 (ENSEEEG00000020767) #32	GPATCH2L (ENSEEEG00000020769) #33	esrrb (ENSEEEG00000020776) ##34	prox2 (ENSEEEG00000020846) #35	dlst (ENSEEEG00000020867) #36
Channel catfish	MODERN SPECIES	28	atxn3 (ENSIPUG00000006959)	serpina10 (ENSIPUG00000006996)	ddx24 (ENSIPUG00000007005)	otub2 (ENSIPUG00000007042)	asb2b (ENSIPUG00000007072)	ENSIPUG00000007096	PRIMA1 (ENSIPUG00000007111)	UNC79 (ENSIPUG00000007129)	BTBD7 (ENSIPUG00000007221)	UBR7 (ENSIPUG00000007267)	ttc8 (ENSIPUG00000007300) #14	Clec4e (ENSIPUG00000007357)	ENSIPUG00000007371	ndc80 (ENSIPUG00000007384)	nek9 (ENSIPUG00000007451) #21	acyp1 (ENSIPUG00000007512) #22	fos (ENSIPUG00000007522) #24	jdp2 (ENSIPUG00000007544) #25	flvcr2 (ENSIPUG00000007581) #26	ERG28 (ENSIPUG00000007591) #28	ttll5 (ENSIPUG00000007622) #29	tgfb3 (ENSIPUG00000007701) #31	ift43 (ENSIPUG00000007710) #32	gpatch2l (ENSIPUG00000007721) #33	esrrb (ENSIPUG00000007762) ##34	prox2 (ENSIPUG00000007832) #35	dlst (ENSIPUG00000007845) #36	rps6kl1 (ENSIPUG00000007905) #37	ENSIPUG00000007940	ENSIPUG00000008106	LRRC74A (ENSIPUG00000008118)
Cyprinoidei	ANCESTRAL SPECIES	176															ENSGT00940000160947	ENSGT00390000011103.B #22	ENSGT00940000164930.a #24	ENSGT00940000155693.a.b #25	ENSGT01030000234625.B.d.c.a #26	ENSGT00390000010925 #28	ENSGT00940000162910 #29	ENSGT00940000155747.g.a #31	ENSGT00390000012060 #32	ENSGT00940000153433.A.e ##34	ENSGT00940000154790.b.a.b #35	ENSGT00930000151014.q #36	ENSGT00940000159815 #37	ENSGT00940000155454.w.a	ENSGT00940000155454.w.b	ENSGT00940000154297.A.g.a	ENSGT00940000159057
Cyprininae	ANCESTRAL SPECIES	352	ENSGT00390000008195	ENSGT00940000158751	ENSGT00940000156891.a.a	ENSGT00940000156668	ENSGT01090000260005.a.b.a.b.a.b.i.b	ENSGT01090000260005.a.b.a.b.a.b.i.a	ENSGT00940000156499.a.a	ENSGT00390000013444.a.a.x	ENSGT00390000013444.a.a.w	ENSGT00940000156065.a	ENSGT00940000159502.d	ENSGT00940000155086.A.f	ENSGT00940000155086.A.e.a	ENSGT00940000153511.b.q.a	ENSGT00940000160947	ENSGT00390000011103.B #22	ENSGT00940000164930.a #24	ENSGT00940000155693.a.b #25	ENSGT01030000234625.B.d.c.a.b #26	ENSGT00390000010925 #28	ENSGT00940000162910 #29	ENSGT00940000155747.g.a.d #31	ENSGT00390000012060 #32	ENSGT00940000153433.A.e.a.b ##34	ENSGT00940000154790.b.a.b.f #35	ENSGT00930000151014.q.h #36	ENSGT00940000159057.j	ENSGT00390000012703.b
Goldfish	MODERN SPECIES	8	eipr1 (ENSCARG00000006219)	ENSCARG00000006208	trappc12 (ENSCARG00000004849)	adi1 (ENSCARG00000004773)	psen1 (ENSCARG00000004748)	ENSCARG00000004741	PAPLN (ENSCARG00000004677)	aqr (ENSCARG00000003972)	ENSCARG00000003736	FERMT2 (ENSCARG00000003543)	DDHD1 (ENSCARG00000003493)	bmp4 (ENSCARG00000003482)	OTOF (ENSCARG00000003230)	syncripl (ENSCARG00000003079)	ENSCARG00000003052	ENSCARG00000003051 #22	ENSCARG00000003046 #24	JDP2 (ENSCARG00000003043) #25	ENSCARG00000003042	FLVCR2 (ENSCARG00000003002) #26	ERG28 (ENSCARG00000002977) #28	ENSCARG00000002968	ENSCARG00000002959 #30	tgfb3 (ENSCARG00000002952) #31	IFT43 (ENSCARG00000002944) #32	ENSCARG00000002940	esrrb (ENSCARG00000002898) ##34	prox2 (ENSCARG00000002885) #35	dlst (ENSCARG00000002601) #36	VASH1 (ENSCARG00000002567)	ENSCARG00000002558
Cyprininae_a	ANCESTRAL SPECIES	369		ENSGT00940000165425.a.b.b.b.a	ENSGT00940000156668	ENSGT01090000260005.a.b.a.b.a.b.i.a	ENSGT00940000156499.a.a	ENSGT00390000013444.a.a.x	ENSGT00390000013444.a.a.w	ENSGT00940000156065.a	ENSGT00940000159502.d	ENSGT00940000155086.A.e.b	ENSGT00940000153511.b.q.b	ENSGT00900000143321	ENSGT00940000155086.A.e.a	ENSGT00940000153511.b.q.a	ENSGT00940000160947	ENSGT00390000011103.B #22	ENSGT00940000164930.a.d #24	ENSGT00940000155693.a.b #25	ENSGT01030000234625.B.d.c.a.b #26	ENSGT00390000010925 #28	ENSGT00940000162910 #29	ENSGT00940000155747.g.a.d #31	ENSGT00390000012060 #32	ENSGT00940000153433.A.e.a.b ##34	ENSGT00940000154790.b.a.b.f #35	ENSGT00930000151014.q.h #36	ENSGT00940000159057.j	ENSGT00390000012703.b
Common carp reference	MODERN SPECIES	30	trappc12 (ENSCCRG00000025338)	adi1 (ENSCCRG00000025334)	psen1 (ENSCCRG00000075467)	ENSCCRG00000051900	ENSCCRG00000074153	ENSCCRG00000012861	aqr (ENSCCRG00000034110)	ENSCCRG00000066002	stxbp6 (ENSCCRG00000015301)	ENSCCRG00000064589	ENSCCRG00000082438	ENSCCRG00000037086	ENSCCRG00000075948	syncripl (ENSCCRG00000041944)	ENSCCRG00000078494	ENSCCRG00000053187 #22	ENSCCRG00000059288 #24	JDP2 (ENSCCRG00000061353) #25	FLVCR2 (ENSCCRG00000038972) #26	ERG28 (ENSCCRG00000038975) #28	ENSCCRG00000038024 #29	tgfb3 (ENSCCRG00000002876) #31	ENSCCRG00000079793	IFT43 (ENSCCRG00000076096) #32	esrrb (ENSCCRG00000072814) ##34	prox2 (ENSCCRG00000081041) #35	dlst (ENSCCRG00000070142) #36	ENSCCRG00000081462 #37	ENSCCRG00000074742	ENSCCRG00000072981 #37	ENSCCRG00000063604
Golden-line barbel	MODERN SPECIES	119	zgc:113142 (ENSSGRG00000043171)	PXDN (ENSSGRG00000043175)	MYT1L (ENSSGRG00000043184)	eipr1 (ENSSGRG00000043195)	trappc12 (ENSSGRG00000043239)	psen1 (ENSSGRG00000043391)	ENSSGRG00000043395	stxbp6 (ENSSGRG00000043397)	fermt2 (ENSSGRG00000043420)	DDHD1 (ENSSGRG00000045041)	bmp4 (ENSSGRG00000045055)	OTOF (ENSSGRG00000045056)	syncripl (ENSSGRG00000045057)	ENSSGRG00000045058	ENSSGRG00000045059	ENSSGRG00000045060 #22	ENSSGRG00000045061 #24	JDP2 (ENSSGRG00000045062) #25	FLVCR2 (ENSSGRG00000045064) #26	ENSSGRG00000045071 #29	TGFB3 (ENSSGRG00000045073) ##31
Clupeiformes	ANCESTRAL SPECIES	278													ENSGT01020000230338.a.b.b.b	ENSGT00940000156145 #21	ENSGT00940000160947	ENSGT00390000011103.B #22	ENSGT00940000164930.a #24	ENSGT00940000155693.a.b #25	ENSGT01030000234625.B.d.c.a #26	ENSGT00390000010925 #28	ENSGT00940000162910 #29	ENSGT00940000162939	ENSGT00940000155747.g.a #31	ENSGT00390000012060 #32	ENSGT00410000025698.b #33	ENSGT00940000153433.A.e ##34	ENSGT00940000154790.b.a.b #35	ENSGT00940000159815 #37	ENSGT00940000159057	ENSGT00390000012703.b	ENSGT00940000153117.B
Denticle herring	DUPLICATION
Denticle herring	MODERN SPECIES	201											ENSDCDG00000007138	ENSDCDG00000007114	ENSDCDG00000007097	NEK9 (ENSDCDG00000006991) #21	ENSDCDG00000006919	ENSDCDG00000006908 #22	ENSDCDG00000006853	ENSDCDG00000006458 #24	ENSDCDG00000006284 #25
Denticle herring	MODERN SPECIES		tdrd9 (ENSDCDG00000002697)	ENSDCDG00000002691	ENSDCDG00000002680	ENSDCDG00000002658	dapp1 (ENSDCDG00000002646)	ENSDCDG00000002628	rrh (ENSDCDG00000002620)	enpep (ENSDCDG00000002498)	lrit3b (ENSDCDG00000002470)	ENSDCDG00000002453	ENSDCDG00000002449	ENSDCDG00000002444	ENSDCDG00000002407	NEK9 (ENSDCDG00000002377) #21	ENSDCDG00000002372	ENSDCDG00000002370 #22	TMED10 (ENSDCDG00000002366)	ENSDCDG00000002363	JDP2 (ENSDCDG00000002360) #25	FLVCR2 (ENSDCDG00000002340) #26	ERG28 (ENSDCDG00000002332) #28	ENSDCDG00000002330 #29	tgfb3 (ENSDCDG00000002323) #31	IFT43 (ENSDCDG00000002321) #32	ENSDCDG00000002318 #33	prox2 (ENSDCDG00000002316) #35	RPS6KL1 (ENSDCDG00000002313) #37	ANGEL1 (ENSDCDG00000002308)	VASH1 (ENSDCDG00000002307)	fcf1 (ENSDCDG00000002304)	AREL1 (ENSDCDG00000002300)
Atlantic herring	MODERN SPECIES	5	trappc12 (ENSCHAG00000021281)	eipr1 (ENSCHAG00000021098)	MYT1L (ENSCHAG00000020739)	PXDN (ENSCHAG00000020600)	CCR6 (ENSCHAG00000020590)	PDIA6 (ENSCHAG00000020474)	ENSCHAG00000020436	AREL1 (ENSCHAG00000020367)	LTBP2 (ENSCHAG00000020019)	pold3 (ENSCHAG00000019995)	ktn1 (ENSCHAG00000019797)	MSH4 (ENSCHAG00000019692)	NEK9 (ENSCHAG00000019580) #21	ENSCHAG00000019571	ENSCHAG00000019557	ENSCHAG00000019548 #22	ENSCHAG00000019541 #24	ENSCHAG00000019518 #25	ENSCHAG00000019487	CLIP4 (ENSCHAG00000019428)	ENSCHAG00000019426	ALK (ENSCHAG00000019414)	slc39a9 (ENSCHAG00000019379)	PLEKHD1 (ENSCHAG00000019213)	ENSCHAG00000019203	smoc1 (ENSCHAG00000019185)	ENSCHAG00000019162	tmem177 (ENSCHAG00000019159)	ENSCHAG00000019127	ENSCHAG00000019113	ENSCHAG00000019080
Osteoglossiformes	ANCESTRAL SPECIES	55	ENSGT00390000010397.a.b	ENSGT00940000160983	ENSGT00950000182988.a.b.b.b.p	ENSGT00940000156128.b.c	ENSGT00940000154895.a.b.d	ENSGT00530000063484.b.a	ENSGT00940000159450	ENSGT00940000159971.f	ENSGT00940000160039.l	ENSGT00390000010687.a.b	ENSGT00940000157557.c	ENSGT00940000154359.x	ENSGT00940000162696.c.b	ENSGT00940000160285.ab	ENSGT00940000161394	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00550000074908	ENSGT00550000074954.r.a	ENSGT00940000159276.a	ENSGT00940000164930.c #24	ENSGT00940000155693.a.a ##25	ENSGT01030000234625.B.d.c.c #26	ENSGT00390000010925 #28	ENSGT00940000162910 #29	ENSGT00940000162939	ENSGT00940000155747.g.a #31	ENSGT00390000012060 #32	ENSGT00410000025698.b #33	ENSGT00940000153433.A.f #34	ENSGT00940000154790.b.a.b #35
P. kingsleyae	MODERN SPECIES	39	AMMECR1 (ENSPKIG00000017331)	CHRDL1 (ENSPKIG00000017405)	PAK3 (ENSPKIG00000017573)	CAPN6 (ENSPKIG00000017646)	ENSPKIG00000017693	ENSPKIG00000017731	SLC16A2 (ENSPKIG00000017749)	ENSPKIG00000017783	ENSPKIG00000017836	zgc:163098 (ENSPKIG00000017920)	WDR44 (ENSPKIG00000018027)	ENSPKIG00000018160	ENSPKIG00000018231	LTBP3 (ENSPKIG00000018275)	ENSPKIG00000018372	ENSPKIG00000018409 #22	SPTBN2 (ENSPKIG00000018604)	ENSPKIG00000018911	ENSPKIG00000018930	pola2 (ENSPKIG00000019005)	cdc42ep2 (ENSPKIG00000019081)	DPF2 (ENSPKIG00000019113)	CHRM1 (ENSPKIG00000019172)	ENSPKIG00000019190	ENSPKIG00000019224	ENSPKIG00000019257	zdhhc24 (ENSPKIG00000019276)	foxa (ENSPKIG00000019301)	rnaseh2c (ENSPKIG00000019331)	kat5b (ENSPKIG00000019383)	ENSPKIG00000019454
Asian bonytongue	DUPLICATION
Asian bonytongue	MODERN SPECIES	4	CHRDL1 (ENSSFOG00015004712)	PAK3 (ENSSFOG00015004773)	CAPN6 (ENSSFOG00015031003)	ENSSFOG00015004818	ENSSFOG00015004841	SLC16A2 (ENSSFOG00015004857)	il13ra2 (ENSSFOG00015004872)	LRCH2 (ENSSFOG00015031284)	zgc:163098 (ENSSFOG00015004962)	WDR44 (ENSSFOG00015005037)	ENSSFOG00015005047	ENSSFOG00015029008	LTBP3 (ENSSFOG00015005092)	ENSSFOG00015005332	ENSSFOG00015026267	ENSSFOG00015005339 #22	SPTBN2 (ENSSFOG00015005369)	ENSSFOG00015005474	ENSSFOG00015005551	pola2 (ENSSFOG00015005566)	cdc42ep2 (ENSSFOG00015005588)	dpf2l (ENSSFOG00015005603)	ENSSFOG00015005656	ENSSFOG00015026655	SIPA1 (ENSSFOG00015005691)	ENSSFOG00015030916	zdhhc24 (ENSSFOG00015026050)	ENSSFOG00015028298	rnaseh2c (ENSSFOG00015005760)	kat5b (ENSSFOG00015005779)	ENSSFOG00015005814
Asian bonytongue	MODERN SPECIES	6	aldh6a1 (ENSSFOG00015016748)	gstz1 (ENSSFOG00015016705)	zgc:163014 (ENSSFOG00015016668)	tmed8 (ENSSFOG00015026633) #7	ENSSFOG00015031275	ATG2B (ENSSFOG00015016533) #9	gskip (ENSSFOG00015032067) #10	npc2.1 (ENSSFOG00015016517) #11	isca2 (ENSSFOG00015025293) #12	EML5 (ENSSFOG00015016421) #13	ttc8 (ENSSFOG00015016384) #14	ENSSFOG00015024647	ENSSFOG00015016354 #14	NEK9 (ENSSFOG00015023989) #21	ENSSFOG00015023986	ENSSFOG00015023983 #22	MLH3 (ENSSFOG00015023979) #23	eif2b2 (ENSSFOG00015023976)	tmed10 (ENSSFOG00015033273)	fosab (ENSSFOG00015023971)	ENSSFOG00015023968 #24	ENSSFOG00015024679 ##25	batf (ENSSFOG00015030749)	FLVCR2 (ENSSFOG00015008109) #26	ERG28 (ENSSFOG00015032324) #28	ENSSFOG00015027867 #29	tgfb3 (ENSSFOG00015031700) #31	IFT43 (ENSSFOG00015023942) #32	GPATCH2L (ENSSFOG00015023938) #33	ESRRB (ENSSFOG00015023935) #34	prox2 (ENSSFOG00015023932) #35
Reedfish	DUPLICATION
Reedfish	MODERN SPECIES		ENSECRG00000000827	LTBP3 (ENSECRG00000000894)	ENSECRG00000000987	ENSECRG00000001001	ENSECRG00000001019	znrd2 (ENSECRG00000001038)	FAM89B (ENSECRG00000001059)	ENSECRG00000001131	ENSECRG00000001264	SIPA1 (ENSECRG00000001315)	ENSECRG00000001383	ENSECRG00000001406	dpf2 (ENSECRG00000001454)	cdc42ep2 (ENSECRG00000001511)	pola2 (ENSECRG00000001528)	ENSECRG00000001558 #22	ENSECRG00000001595	ENSECRG00000001689	plcb3 (ENSECRG00000001823)	ppp1r14ba (ENSECRG00000001899)	fkbp2 (ENSECRG00000001913)	ENSECRG00000001977	ENSECRG00000002087	ENSECRG00000002099	ENSECRG00000002109	ENSECRG00000002122	PC (ENSECRG00000002143)	ctsf (ENSECRG00000002183)	banf1 (ENSECRG00000002202)	eif1ad (ENSECRG00000002218)	sart1 (ENSECRG00000002228)
Reedfish	MODERN SPECIES	7	ENSECRG00000012191	casq1b (ENSECRG00000012209)	PEA15 (ENSECRG00000012229)	BDKRB2 (ENSECRG00000012246)	ENSECRG00000012260	ENSECRG00000012273	GPR65 (ENSECRG00000012291)	kcnk10a (ENSECRG00000012303)	ENSECRG00000012323	PTPN21 (ENSECRG00000012351)	ZC3H14 (ENSECRG00000012378)	EML5 (ENSECRG00000012423) #13	ttc8 (ENSECRG00000012513) #14	NEK9 (ENSECRG00000012553) #21	ENSECRG00000012617	ENSECRG00000012659 #22	ENSECRG00000012679	MLH3 (ENSECRG00000012707) #23	eif2b2 (ENSECRG00000012733)	fermt2 (ENSECRG00000012773)	ddhd1b (ENSECRG00000012829)	bmp4 (ENSECRG00000012847)	cgrrf1 (ENSECRG00000012864)	CGRRF1 (ENSECRG00000012914)	SAMD4A (ENSECRG00000013074)	gch1 (ENSECRG00000013129)	wdhd1 (ENSECRG00000013162)	socs4 (ENSECRG00000013211)	ENSECRG00000013232	gnpnat1 (ENSECRG00000013253)	styx (ENSECRG00000013277)
Sarcopterygii	ANCESTRAL SPECIES	194	ENSGT00390000012703.b	ENSGT00940000153433.A #34	ENSGT00410000025698.b #33	ENSGT00390000012060 #32	ENSGT00940000155747 #31	ENSGT00940000162939	ENSGT00940000162910 #29	ENSGT00390000010925 #28	ENSGT01030000234625.B.d #26	ENSGT00940000159745	ENSGT00940000155693 #25	ENSGT00940000159276	ENSGT00550000074954	ENSGT00940000156145 #21	ENSGT00940000160947	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00550000074908
Tetrapoda	ANCESTRAL SPECIES	67	ENSGT00390000012703.b	ENSGT00940000153433.A #34	ENSGT00410000025698.b #33	ENSGT00390000012060 #32	ENSGT00940000155747 #31	ENSGT00940000162939	ENSGT00940000162910 #29	ENSGT00390000010925 #28	ENSGT01030000234625.B.d #26	ENSGT00940000159745	ENSGT00940000155693 #25	ENSGT00940000159276	ENSGT00550000074954	ENSGT00940000156145 #21	ENSGT00940000160947	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00550000074908
Amniota	ANCESTRAL SPECIES	8	ENSGT00390000012703.b	ENSGT00940000153433.A #34	ENSGT00410000025698.b #33	ENSGT00390000012060 #32	ENSGT00940000155747 #31	ENSGT00940000162939	ENSGT00940000162910 #29	ENSGT00390000010925 #28	ENSGT01030000234625.B.d #26	ENSGT00940000159745	ENSGT00940000155693 #25	ENSGT00940000159276	ENSGT00550000074954	ENSGT00940000156145 #21	ENSGT00940000160947	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815 #37	ENSGT00930000151014 #36	ENSGT00940000154790.b #35	ENSGT00440000039837	ENSGT00940000153117.B	ENSGT00940000156723	ENSGT00940000160884	ENSGT00390000006223 #11	ENSGT00390000005700 #12	ENSGT00950000183147.A.a	ENSGT00390000007874	ENSGT00950000182955.a.a.b
Mammalia	ANCESTRAL SPECIES	16	ENSGT00390000012703.b	ENSGT00940000153433.A #34	ENSGT00410000025698.b #33	ENSGT00390000012060 #32	ENSGT00940000155747 #31	ENSGT00940000162939	ENSGT00940000162910 #29	ENSGT00390000010925 #28	ENSGT01030000234625.B.d #26	ENSGT00940000159745	ENSGT00940000155693 #25	ENSGT00940000159276	ENSGT00550000074954	ENSGT00940000156145 #21	ENSGT00940000160947	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815 #37	ENSGT00930000151014 #36	ENSGT00940000154790.b #35	ENSGT00440000039837	ENSGT00940000153117.B	ENSGT00940000156723	ENSGT00940000160884	ENSGT00940000167687	ENSGT00390000005700 #12	ENSGT00390000006223 #11	ENSGT00950000183147.A.a	ENSGT00390000007874
Theria	ANCESTRAL SPECIES	14	ENSGT00390000012703.b	ENSGT00940000153433.A #34	ENSGT00410000025698.b #33	ENSGT00390000012060 #32	ENSGT00940000155747 #31	ENSGT00940000162939	ENSGT00940000162910 #29	ENSGT00390000010925 #28	ENSGT01030000234625.B.d #26	ENSGT00940000159745	ENSGT00940000155693 #25	ENSGT00940000159276	ENSGT00550000074954	ENSGT00940000156145 #21	ENSGT00940000160947	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815 #37	ENSGT00930000151014 #36	ENSGT00940000154790.b #35	ENSGT00440000039837	ENSGT00940000153117.B	ENSGT00940000156723	ENSGT00940000160884	ENSGT00390000005700 #12	ENSGT00390000006223 #11	ENSGT00950000183147.A.a	ENSGT00390000007874	ENSGT00950000182955.a.a.b
Marsupialia	ANCESTRAL SPECIES		ENSGT00940000159057	ENSGT00390000012703.b	ENSGT00940000153433.A #34	ENSGT00410000025698.b #33	ENSGT00390000012060 #32	ENSGT00940000155747 #31	ENSGT00940000162910 #29	ENSGT00390000010925 #28	ENSGT01030000234625.B.d #26	ENSGT00940000159745	ENSGT00940000155693 #25	ENSGT00940000159276	ENSGT00550000074954	ENSGT00940000156145 #21	ENSGT00940000160947	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815 #37	ENSGT00930000151014 #36	ENSGT00940000154790.b #35	ENSGT00440000039837	ENSGT00940000153117.B	ENSGT00940000156723	ENSGT00940000160884	ENSGT00390000005700 #12	ENSGT00390000006223 #11	ENSGT00950000183147.A.a	ENSGT00390000007874	ENSGT00950000182955.a.a.b
Opossum	MODERN SPECIES		IFT43 (ENSMODG00000005632) #32	TGFB3 (ENSMODG00000005658) #31	ENSMODG00000005740 #29	ERG28 (ENSMODG00000005762) #28	FLVCR2 (ENSMODG00000040198) #26	ENSMODG00000047729	ENSMODG00000005902	BATF (ENSMODG00000005905)	ENSMODG00000049733	JDP2 (ENSMODG00000051073) #25	ENSMODG00000041453	FOS (ENSMODG00000005927)	TMED10 (ENSMODG00000005949)	NEK9 (ENSMODG00000005989) #21	ENSMODG00000006002	ENSMODG00000006014 #22	MLH3 (ENSMODG00000006037) #23	ENSMODG00000006061	ENSMODG00000006071	RPS6KL1 (ENSMODG00000006093) #37	DLST (ENSMODG00000006129) #36	ENSMODG00000006137 #35	YLPM1 (ENSMODG00000006168)	FCF1 (ENSMODG00000006179)	AREL1 (ENSMODG00000006202)	ENSMODG00000029071	LTBP2 (ENSMODG00000006244)	ISCA2 (ENSMODG00000006248) #12	ENSMODG00000006270 #11	ENSMODG00000024016	VRTN (ENSMODG00000006340)
Marsupialia_b	ANCESTRAL SPECIES		ENSGT00940000159057	ENSGT00390000012703.b	ENSGT00940000153433.A #34	ENSGT00410000025698.b #33	ENSGT00390000012060 #32	ENSGT00940000155747 #31	ENSGT00940000162910 #29	ENSGT00390000010925 #28	ENSGT01030000234625.B.d #26	ENSGT00940000159745	ENSGT00940000155693 #25	ENSGT00940000159276	ENSGT00550000074954	ENSGT00940000156145 #21	ENSGT00940000160947	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815 #37	ENSGT00930000151014 #36	ENSGT00940000154790.b #35	ENSGT00440000039837	ENSGT00940000153117.B	ENSGT00940000156723	ENSGT00940000160884	ENSGT00390000005700 #12	ENSGT00390000006223 #11	ENSGT00950000183147.A.a	ENSGT00390000007874	ENSGT00950000182955.a.a.b
Tasmanian devil	MODERN SPECIES	1	VASH1 (ENSSHAG00000012367)	ESRRB (ENSSHAG00000013695) #34	GPATCH2L (ENSSHAG00000014999) #33	IFT43 (ENSSHAG00000028793) #32	TGFB3 (ENSSHAG00000031613) #31	ENSSHAG00000016129 #29	ERG28 (ENSSHAG00000020554) #28	FLVCR2 (ENSSHAG00000016893) #26	BATF (ENSSHAG00000023550)	ENSSHAG00000029697	JDP2 (ENSSHAG00000025173) #25	FOS (ENSSHAG00000017780)	TMED10 (ENSSHAG00000028092)	NEK9 (ENSSHAG00000017943) #21	ENSSHAG00000017992	ENSSHAG00000029322 #22	MLH3 (ENSSHAG00000018012) #23	EIF2B2 (ENSSHAG00000023868)	PGF (ENSSHAG00000029245)	RPS6KL1 (ENSSHAG00000027019) #37	DLST (ENSSHAG00000031624) #36	YLPM1 (ENSSHAG00000018328)	ENSSHAG00000018304 #35	FCF1 (ENSSHAG00000018398)	AREL1 (ENSSHAG00000018445)	LTBP2 (ENSSHAG00000018569)	ISCA2 (ENSSHAG00000025770) #12	ENSSHAG00000018714 #11	SYNDIG1L (ENSSHAG00000018764)	VRTN (ENSSHAG00000021665)	ABCD4 (ENSSHAG00000018805)
Diprotodontia	ANCESTRAL SPECIES		ENSGT00940000153433.A #34	ENSGT00410000025698.b #33	ENSGT00390000012060 #32	ENSGT00940000155747 #31	ENSGT00940000162910 #29	ENSGT00390000010925 #28	ENSGT01030000234625.B.d #26	ENSGT00940000159745	ENSGT00940000162651	ENSGT00940000155070	ENSGT00940000155693 #25	ENSGT00940000159276	ENSGT00550000074954	ENSGT00940000156145 #21	ENSGT00940000160947	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815 #37	ENSGT00930000151014 #36	ENSGT00940000154790.b #35	ENSGT00440000039837	ENSGT00940000153117.B	ENSGT00940000156723	ENSGT00940000160884	ENSGT00390000005700 #12	ENSGT00390000006223 #11	ENSGT00950000183147.A.a	ENSGT00390000007874	ENSGT00950000182955.a.a.b
Diprotodontia_a	ANCESTRAL SPECIES	1	ENSGT00940000159057	ENSGT00390000012703.b	ENSGT00940000153433.A #34	ENSGT00410000025698.b #33	ENSGT00390000012060 #32	ENSGT00940000155747 #31	ENSGT00940000162910 #29	ENSGT00390000010925 #28	ENSGT01030000234625.B.d #26	ENSGT00940000159745	ENSGT00940000155693 #25	ENSGT00940000159276	ENSGT00550000074954	ENSGT00940000156145 #21	ENSGT00940000160947	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815 #37	ENSGT00930000151014 #36	ENSGT00940000154790.b #35	ENSGT00440000039837	ENSGT00940000153117.B	ENSGT00940000156723	ENSGT00940000160884	ENSGT00390000005700 #12	ENSGT00390000006223 #11	ENSGT00950000183147.A.a	ENSGT00390000007874	ENSGT00950000182955.a.a.b
koala	MODERN SPECIES	24	ENSPCIG00000026922	VASH1 (ENSPCIG00000026927)	ESRRB (ENSPCIG00000036136) #34	GPATCH2L (ENSPCIG00000010391) #33	IFT43 (ENSPCIG00000002595) #32	TGFB3 (ENSPCIG00000002617) #31	ENSPCIG00000002659 #29	ERG28 (ENSPCIG00000002771) #28	FLVCR2 (ENSPCIG00000002780) #26	BATF (ENSPCIG00000002791)	JDP2 (ENSPCIG00000030932) #25	FOS (ENSPCIG00000008747)	TMED10 (ENSPCIG00000008746)	NEK9 (ENSPCIG00000008745) #21	ENSPCIG00000008744	ENSPCIG00000008743 #22	MLH3 (ENSPCIG00000036351) #23	EIF2B2 (ENSPCIG00000008741)	PGF (ENSPCIG00000008740)	RPS6KL1 (ENSPCIG00000008738) #37	DLST (ENSPCIG00000008737) #36	ENSPCIG00000008736 #35	YLPM1 (ENSPCIG00000008730)	FCF1 (ENSPCIG00000008728)	AREL1 (ENSPCIG00000008724)	LTBP2 (ENSPCIG00000008717)	ENSPCIG00000033435 #12	ENSPCIG00000008706 #11	SYNDIG1L (ENSPCIG00000008703)	VRTN (ENSPCIG00000008700)	ABCD4 (ENSPCIG00000010614)
Common wonbat	MODERN SPECIES	1131	VASH1 (ENSVURG00010016226)	ESRRB (ENSVURG00010016250) #34	ENSVURG00010016277	GPATCH2L (ENSVURG00010016289) #33	IFT43 (ENSVURG00010016308) #32	ENSVURG00010016321 #31	TTLL5 (ENSVURG00010016488)	FLVCR2 (ENSVURG00010018065) #26	BATF (ENSVURG00010018071)	ENSVURG00010018078	JDP2 (ENSVURG00010018087) #25	FOS (ENSVURG00010018097)	TMED10 (ENSVURG00010018116)	NEK9 (ENSVURG00010018126) #21	ENSVURG00010018132	ENSVURG00010018133 #22	MLH3 (ENSVURG00010018146) #23	EIF2B2 (ENSVURG00010018164)	PGF (ENSVURG00010018167)	RPS6KL1 (ENSVURG00010018173) #37	DLST (ENSVURG00010018183) #36	ENSVURG00010018192 #35	YLPM1 (ENSVURG00010018201)	FCF1 (ENSVURG00010018218)	AREL1 (ENSVURG00010018228)	LTBP2 (ENSVURG00010018263)	ENSVURG00010018290 #12	NPC2 (ENSVURG00010018300) #11	SYNDIG1L (ENSVURG00010018306)	VRTN (ENSVURG00010018318)	ABCD4 (ENSVURG00010018325)
Wallaby	MODERN SPECIES	2818																ENSMEUG00000003035 #22	MLH3 (ENSMEUG00000003025) #23
Eutheria	ANCESTRAL SPECIES	12	ENSGT00390000012703.b	ENSGT00940000153433.A #34	ENSGT00410000025698.b #33	ENSGT00390000012060 #32	ENSGT00940000155747 #31	ENSGT00940000162939	ENSGT00940000162910 #29	ENSGT00390000010925 #28	ENSGT01030000234625.B.d #26	ENSGT00940000159745	ENSGT00940000155693 #25	ENSGT00940000159276	ENSGT00550000074954	ENSGT00940000156145 #21	ENSGT00940000160947	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815 #37	ENSGT00930000151014 #36	ENSGT00940000154790.b #35	ENSGT00440000039837	ENSGT00940000153117.B.d	ENSGT00940000156723	ENSGT00940000160884	ENSGT00390000005700 #12	ENSGT00390000006223 #11	ENSGT00950000183147.A.a	ENSGT00390000007874	ENSGT00950000182955.a.a.b
Atlantogenata	ANCESTRAL SPECIES	8	ENSGT00390000012703.b	ENSGT00940000153433.A #34	ENSGT00410000025698.b #33	ENSGT00940000165448	ENSGT00390000012060 #32	ENSGT00940000155747 #31	ENSGT00940000162910 #29	ENSGT00390000010925 #28	ENSGT01030000234625.B.d #26	ENSGT00940000159745	ENSGT00940000155693 #25	ENSGT00940000159276	ENSGT00550000074954	ENSGT00940000156145 #21	ENSGT00940000160947	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815 #37	ENSGT00930000151014 #36	ENSGT00940000154790.b #35	ENSGT00440000039837	ENSGT00940000153117.B.d	ENSGT00940000156723	ENSGT00940000160884	ENSGT00390000005700 #12	ENSGT00390000006223 #11	ENSGT00950000183147.A.a	ENSGT00390000007874	ENSGT00950000182955.a.a.b
Afrotheria	ANCESTRAL SPECIES	6	ENSGT00940000159057	ENSGT00390000012703.b	ENSGT00940000153433.A #34	ENSGT00410000025698.b #33	ENSGT00940000165448	ENSGT00940000155747 #31	ENSGT00940000162910 #29	ENSGT00390000010925 #28	ENSGT01030000234625.B.d #26	ENSGT00940000159745	ENSGT00940000155693 #25	ENSGT00940000159276	ENSGT00550000074954	ENSGT00940000156145 #21	ENSGT00940000160947	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815 #37	ENSGT00930000151014 #36	ENSGT00940000154790.b #35	ENSGT00440000039837	ENSGT00940000153117.B.d	ENSGT00940000156723	ENSGT00940000160884	ENSGT00390000005700 #12	ENSGT00390000006223 #11	ENSGT00950000183147.A.a	ENSGT00390000007874	ENSGT00950000182955.a.a.b
Afrotheria_a	ANCESTRAL SPECIES	6	ENSGT00940000159057	ENSGT00390000012703.b	ENSGT00940000153433.A #34	ENSGT00410000025698.b #33	ENSGT00940000165448	ENSGT00940000155747 #31	ENSGT00940000162910 #29	ENSGT00390000010925 #28	ENSGT01030000234625.B.d #26	ENSGT00940000159745	ENSGT00940000155693 #25	ENSGT00940000159276	ENSGT00550000074954	ENSGT00940000156145 #21	ENSGT00940000160947	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815 #37	ENSGT00930000151014 #36	ENSGT00940000154790.b #35	ENSGT00440000039837	ENSGT00940000153117.B.d	ENSGT00940000156723	ENSGT00940000160884	ENSGT00390000005700 #12	ENSGT00390000006223 #11	ENSGT00950000183147.A.a	ENSGT00390000007874	ENSGT00950000182955.a.a.b
Elephant	MODERN SPECIES	602	ANGEL1 (ENSLAFG00000012241)	VASH1 (ENSLAFG00000012235)	ESRRB (ENSLAFG00000015544) #34	GPATCH2L (ENSLAFG00000026036) #33	ENSLAFG00000016575	TGFB3 (ENSLAFG00000022584) #31	TTLL5 (ENSLAFG00000007694)	ERG28 (ENSLAFG00000004755) #28	FLVCR2 (ENSLAFG00000014461) #26	BATF (ENSLAFG00000011315)	JDP2 (ENSLAFG00000025757) #25	FOS (ENSLAFG00000029435)	TMED10 (ENSLAFG00000022769)	NEK9 (ENSLAFG00000013150) #21	ZC2HC1C (ENSLAFG00000023104)	ENSLAFG00000016628 #22	MLH3 (ENSLAFG00000022310) #23	EIF2B2 (ENSLAFG00000016616)	PGF (ENSLAFG00000016611)	RPS6KL1 (ENSLAFG00000032632) #37	DLST (ENSLAFG00000012552) #36	PROX2 (ENSLAFG00000012545) #35	YLPM1 (ENSLAFG00000012536)	ENSLAFG00000000724	AREL1 (ENSLAFG00000002793)	LTBP2 (ENSLAFG00000001609)	ISCA2 (ENSLAFG00000001607) #12	NPC2 (ENSLAFG00000002876) #11	SYNDIG1L (ENSLAFG00000004416)	VRTN (ENSLAFG00000026239)	ABCD4 (ENSLAFG00000002865)
Tenrec	MODERN SPECIES	1957														TMED10 (ENSETEG00000010607)	NEK9 (ENSETEG00000010603) #21	ENSETEG00000010601 #22	MLH3 (ENSETEG00000010598) #23	EIF2B2 (ENSETEG00000010596)
Xenarthra	ANCESTRAL SPECIES	20					ENSGT00390000012060 #32	ENSGT00940000155747 #31	ENSGT00940000162910 #29	ENSGT00390000010925 #28	ENSGT01030000234625.B.d #26	ENSGT00940000159745	ENSGT00940000155693 #25	ENSGT00940000159276	ENSGT00550000074954	ENSGT00940000156145 #21	ENSGT00940000160947	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815 #37	ENSGT00930000151014 #36	ENSGT00940000154790.b #35	ENSGT00440000039837	ENSGT00530000064848	ENSGT00940000156723	ENSGT00940000160884	ENSGT00390000005700 #12	ENSGT00390000006223 #11	ENSGT00950000183147.A.a	ENSGT00950000182955.a.a.b	ENSGT00940000157776
Armadillo	MODERN SPECIES	1229				IFT43 (ENSDNOG00000043800) #32	TGFB3 (ENSDNOG00000004915) #31	ENSDNOG00000004904 #29	ERG28 (ENSDNOG00000017697) #28	FLVCR2 (ENSDNOG00000034014) #26	BATF (ENSDNOG00000047121)	JDP2 (ENSDNOG00000033141) #25	ENSDNOG00000038922	FOS (ENSDNOG00000031516)	TMED10 (ENSDNOG00000019851)	NEK9 (ENSDNOG00000001965) #21	ZC2HC1C (ENSDNOG00000046626)	ENSDNOG00000047029 #22	MLH3 (ENSDNOG00000048962) #23	EIF2B2 (ENSDNOG00000032838)	PGF (ENSDNOG00000042336)	RPS6KL1 (ENSDNOG00000045055) #37	DLST (ENSDNOG00000033083) #36	PROX2 (ENSDNOG00000005528) #35	YLPM1 (ENSDNOG00000039154)	AREL1 (ENSDNOG00000003340)	LTBP2 (ENSDNOG00000016211)	ISCA2 (ENSDNOG00000034125) #12	ENSDNOG00000016210 #11	SYNDIG1L (ENSDNOG00000032053)	ABCD4 (ENSDNOG00000008122)	ENSDNOG00000032858	VSX2 (ENSDNOG00000005036)
Sloth	MODERN SPECIES	1772													TMED10 (ENSCHOG00000010955)	NEK9 (ENSCHOG00000010926) #21	ZC2HC1C (ENSCHOG00000010917)	ENSCHOG00000010914 #22	MLH3 (ENSCHOG00000010899) #23	EIF2B2 (ENSCHOG00000010892)
Boreoeutheria	ANCESTRAL SPECIES	3	ENSGT00940000153433.A #34	ENSGT00410000025698.b #33	ENSGT00390000012060 #32	ENSGT00940000155747 #31	ENSGT00940000162939	ENSGT00940000162910 #29	ENSGT00390000010925 #28	ENSGT01030000234625.B.d #26	ENSGT00940000159745	ENSGT00940000155693 #25	ENSGT00990000207089	ENSGT00940000159276	ENSGT00550000074954	ENSGT00940000156145 #21	ENSGT00940000160947	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815 #37	ENSGT00930000151014 #36	ENSGT00940000154790.b #35	ENSGT00440000039837	ENSGT00940000153117.B.d	ENSGT00940000156723	ENSGT00900000143158	ENSGT00940000160884	ENSGT00390000005700 #12	ENSGT00390000006223 #11	ENSGT00950000183147.A.a	ENSGT00390000007874
Laurasiatheria	ANCESTRAL SPECIES	3	ENSGT00940000153433.A #34	ENSGT00410000025698.b #33	ENSGT00390000012060 #32	ENSGT00940000155747 #31	ENSGT00940000162939	ENSGT00940000162910 #29	ENSGT00390000010925 #28	ENSGT01030000234625.B.d #26	ENSGT00940000159745	ENSGT00940000155693 #25	ENSGT00990000207089	ENSGT00940000159276	ENSGT00550000074954	ENSGT00940000156145 #21	ENSGT00940000160947	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815 #37	ENSGT00930000151014 #36	ENSGT00940000154790.b #35	ENSGT00440000039837	ENSGT00940000153117.B.d	ENSGT00940000156723	ENSGT00900000143158	ENSGT00940000160884	ENSGT00390000005700 #12	ENSGT00390000006223 #11	ENSGT00950000183147.A.a	ENSGT00390000007874
Laurasiatheria_a	ANCESTRAL SPECIES	2	ENSGT00940000153433.A #34	ENSGT00410000025698.b #33	ENSGT00390000012060 #32	ENSGT00940000155747 #31	ENSGT00940000162939	ENSGT00940000162910 #29	ENSGT00390000010925 #28	ENSGT01030000234625.B.d.f #26	ENSGT00940000159745	ENSGT00940000155693 #25	ENSGT00990000207089	ENSGT00940000159276	ENSGT00550000074954	ENSGT00940000156145 #21	ENSGT00940000160947	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815 #37	ENSGT00930000151014 #36	ENSGT00940000154790.b #35	ENSGT00440000039837	ENSGT00940000153117.B.c.b	ENSGT00530000064848	ENSGT00940000153117.B.d	ENSGT00940000156723	ENSGT00900000143158	ENSGT00940000160884	ENSGT00390000005700 #12	ENSGT00390000006223 #11
Artiodactyla	ANCESTRAL SPECIES	3	ENSGT00390000012703.b	ENSGT00940000153433.A #34	ENSGT00410000025698.b #33	ENSGT00390000012060 #32	ENSGT00940000155747 #31	ENSGT00940000162939	ENSGT00390000010925 #28	ENSGT01030000234625.B.d.f #26	ENSGT00940000159745	ENSGT00940000155693 #25	ENSGT00990000207089	ENSGT00940000159276	ENSGT00550000074954	ENSGT00940000156145 #21	ENSGT00940000160947	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815 #37	ENSGT00930000151014 #36	ENSGT00940000154790.b #35	ENSGT00440000039837	ENSGT00940000153117.B.c.a	ENSGT00940000153117.B.c.b	ENSGT00530000064848	ENSGT00940000153117.B.d	ENSGT00940000156723	ENSGT00900000143158	ENSGT00940000160884	ENSGT00390000005700 #12
Suina	ANCESTRAL SPECIES	24	ENSGT00940000159057	ENSGT00390000012703.b	ENSGT00940000153433.A #34	ENSGT00410000025698.b #33	ENSGT00390000012060 #32	ENSGT00940000155747 #31	ENSGT00940000162939	ENSGT00390000010925 #28	ENSGT01030000234625.B.d.f #26	ENSGT00940000159745	ENSGT00940000155693 #25	ENSGT00940000159276	ENSGT00550000074954	ENSGT00940000156145 #21	ENSGT00940000160947	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815 #37	ENSGT00930000151014 #36	ENSGT00940000154790.b #35	ENSGT00440000039837	ENSGT00940000153117.B.c.a	ENSGT00940000156723	ENSGT00900000143158	ENSGT00940000160884	ENSGT00390000005700 #12	ENSGT00390000006223 #11	ENSGT00950000183147.A.a	ENSGT00390000007874
Pig	MODERN SPECIES	15	ANGEL1 (ENSSSCG00000002390)	VASH1 (ENSSSCG00000002389)	ESRRB (ENSSSCG00000002388) #34	GPATCH2L (ENSSSCG00000002387) #33	IFT43 (ENSSSCG00000002386) #32	TGFB3 (ENSSSCG00000002385) #31	TTLL5 (ENSSSCG00000025984)	ERG28 (ENSSSCG00000036494) #28	FLVCR2 (ENSSSCG00000021606) #26	BATF (ENSSSCG00000055470)	JDP2 (ENSSSCG00000035895) #25	FOS (ENSSSCG00000002383)	TMED10 (ENSSSCG00000035684)	NEK9 (ENSSSCG00000002381) #21	ZC2HC1C (ENSSSCG00000002380)	ENSSSCG00000002379 #22	MLH3 (ENSSSCG00000002378) #23	ENSSSCG00000051291	EIF2B2 (ENSSSCG00000002377)	PGF (ENSSSCG00000050616)	RPS6KL1 (ENSSSCG00000002375) #37	DLST (ENSSSCG00000002374) #36	PROX2 (ENSSSCG00000002373) #35	YLPM1 (ENSSSCG00000002372)	FCF1 (ENSSSCG00000039202)	AREL1 (ENSSSCG00000002370)	ENSSSCG00000031305	LTBP2 (ENSSSCG00000002368)	ISCA2 (ENSSSCG00000002367) #12	NPC2 (ENSSSCG00000002366) #11	SYNDIG1L (ENSSSCG00000025000)
Chacoan peccary	MODERN SPECIES	885	ANGEL1 (ENSCWAG00000021318)	VASH1 (ENSCWAG00000021293)	ESRRB (ENSCWAG00000021273) #34	GPATCH2L (ENSCWAG00000021259) #33	IFT43 (ENSCWAG00000021243) #32	TGFB3 (ENSCWAG00000021233) #31	TTLL5 (ENSCWAG00000021198)	ERG28 (ENSCWAG00000021179) #28	FLVCR2 (ENSCWAG00000021161) #26	BATF (ENSCWAG00000021146)	JDP2 (ENSCWAG00000021133) #25	FOS (ENSCWAG00000021112)	TMED10 (ENSCWAG00000021099)	NEK9 (ENSCWAG00000021083) #21	ENSCWAG00000021069	ENSCWAG00000021059 #22	MLH3 (ENSCWAG00000021039) #23	EIF2B2 (ENSCWAG00000021011)	PGF (ENSCWAG00000020978)	RPS6KL1 (ENSCWAG00000020956) #37	DLST (ENSCWAG00000020938) #36	ENSCWAG00000020923 #35	YLPM1 (ENSCWAG00000020891)	FCF1 (ENSCWAG00000020846)	AREL1 (ENSCWAG00000020824)	ENSCWAG00000020814	LTBP2 (ENSCWAG00000020735)	ENSCWAG00000020697 #12	NPC2 (ENSCWAG00000020691) #11	SYNDIG1L (ENSCWAG00000020686)	VRTN (ENSCWAG00000020682)
Artiodactyla_a	ANCESTRAL SPECIES	2	ENSGT00390000012703.b	ENSGT00940000153433.A #34	ENSGT00410000025698.b #33	ENSGT00390000012060 #32	ENSGT00940000155747 #31	ENSGT00940000162939	ENSGT00390000010925 #28	ENSGT01030000234625.B.d.f #26	ENSGT00940000159745	ENSGT00940000155693 #25	ENSGT00990000207089	ENSGT00940000159276	ENSGT00550000074954	ENSGT00940000156145 #21	ENSGT00940000160947	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815 #37	ENSGT00930000151014 #36	ENSGT00940000154790.b #35	ENSGT00440000039837	ENSGT00940000153117.B.c.a	ENSGT00940000153117.B.c.b	ENSGT00530000064848	ENSGT00940000153117.B.d	ENSGT00940000156723	ENSGT00900000143158	ENSGT00940000160884	ENSGT00390000005700 #12
Camelidae	ANCESTRAL SPECIES	8	ENSGT00940000159057	ENSGT00390000012703.b	ENSGT00940000153433.A #34	ENSGT00410000025698.b #33	ENSGT00390000012060 #32	ENSGT00940000155747 #31	ENSGT00940000162939	ENSGT00390000010925 #28	ENSGT01030000234625.B.d.f #26	ENSGT00940000159745	ENSGT00940000155693 #25	ENSGT00940000159276	ENSGT00550000074954	ENSGT00940000156145 #21	ENSGT00940000160947	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815 #37	ENSGT00930000151014 #36	ENSGT00940000154790.b #35	ENSGT00440000039837	ENSGT00940000153117.B.c.b	ENSGT00530000064848	ENSGT00940000153117.B.c.a	ENSGT00940000156723	ENSGT00940000160884	ENSGT00390000005700 #12	ENSGT00390000006223 #11	ENSGT00950000183147.A.a
Arabian camel	MODERN SPECIES	32	ANGEL1 (ENSCDRG00005001736)	VASH1 (ENSCDRG00005001716)	ESRRB (ENSCDRG00005001673) #34	GPATCH2L (ENSCDRG00005001603) #33	IFT43 (ENSCDRG00005001576) #32	TGFB3 (ENSCDRG00005001558) #31	TTLL5 (ENSCDRG00005001293)	ERG28 (ENSCDRG00005001259) #28	FLVCR2 (ENSCDRG00005001225) #26	BATF (ENSCDRG00005001210)	JDP2 (ENSCDRG00005001197) #25	FOS (ENSCDRG00005001172)	ENSCDRG00005001147	NEK9 (ENSCDRG00005001099) #21	ZC2HC1C (ENSCDRG00005001075)	ENSCDRG00005001055 #22	MLH3 (ENSCDRG00005000924) #23	EIF2B2 (ENSCDRG00005000865)	PGF (ENSCDRG00005000818)	RPS6KL1 (ENSCDRG00005000787) #37	DLST (ENSCDRG00005000759) #36	ENSCDRG00005000746 #35	YLPM1 (ENSCDRG00005000671)	FCF1 (ENSCDRG00005000630)	AREL1 (ENSCDRG00005000590)	LTBP2 (ENSCDRG00005000468)	ISCA2 (ENSCDRG00005000399) #12	NPC2 (ENSCDRG00005000375) #11	SYNDIG1L (ENSCDRG00005000359)	VRTN (ENSCDRG00005000338)	ABCD4 (ENSCDRG00005000282)
Alpaca	MODERN SPECIES	72						GPATCH2L (ENSVPAG00000003100) #33	ENSVPAG00000003099	TTLL5 (ENSVPAG00000003096)	ENSVPAG00000003095	FLVCR2 (ENSVPAG00000003094) #26	BATF (ENSVPAG00000003093)	JDP2 (ENSVPAG00000003090) #25	TMED10 (ENSVPAG00000003089)	NEK9 (ENSVPAG00000003088) #21	ZC2HC1C (ENSVPAG00000003086)	ENSVPAG00000003085 #22	MLH3 (ENSVPAG00000003084) #23	EIF2B2 (ENSVPAG00000003082)	ENSVPAG00000003079	RPS6KL1 (ENSVPAG00000003077) #37	DLST (ENSVPAG00000003074) #36	PROX2 (ENSVPAG00000003072) #35	YLPM1 (ENSVPAG00000003067)	FCF1 (ENSVPAG00000003066)	ENSVPAG00000003063	AREL1 (ENSVPAG00000003059)
Artiodactyla_b	ANCESTRAL SPECIES	2	ENSGT00390000012703.b	ENSGT00940000153433.A #34	ENSGT00410000025698.b #33	ENSGT00390000012060 #32	ENSGT00940000155747 #31	ENSGT00940000162939	ENSGT00390000010925 #28	ENSGT01030000234625.B.d.f #26	ENSGT00940000159745	ENSGT00940000155693 #25	ENSGT00990000207089	ENSGT00940000159276	ENSGT00550000074954	ENSGT00940000156145 #21	ENSGT00940000160947	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815 #37	ENSGT00930000151014 #36	ENSGT00940000154790.b #35	ENSGT00440000039837	ENSGT00940000153117.B.d	ENSGT00940000156723	ENSGT00900000143158	ENSGT00940000160884	ENSGT00390000005700 #12	ENSGT00390000006223 #11	ENSGT00950000183147.A.a	ENSGT00390000007874
Cetacea	ANCESTRAL SPECIES	2	ENSGT00940000153433.A #34	ENSGT00410000025698.b #33	ENSGT00390000012060 #32	ENSGT00940000155747 #31	ENSGT00940000162939	ENSGT00390000010925 #28	ENSGT01030000234625.B.d.f #26	ENSGT00940000159745	ENSGT00940000155693 #25	ENSGT00990000207089	ENSGT00940000159276	ENSGT00940000158980.b	ENSGT00550000074954	ENSGT00940000156145 #21	ENSGT00940000160947	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815 #37	ENSGT00930000151014 #36	ENSGT00940000154790.b #35	ENSGT00440000039837	ENSGT00940000153117.B.d	ENSGT00940000156723	ENSGT00910000147973	ENSGT00940000160884	ENSGT00390000005700 #12	ENSGT00390000006223.p #11	ENSGT00950000183147.A.a	ENSGT00390000007874
Odontoceti	ANCESTRAL SPECIES	2	ENSGT00940000153433.A #34	ENSGT00410000025698.b #33	ENSGT00390000012060 #32	ENSGT00940000155747 #31	ENSGT00940000162939	ENSGT00390000010925 #28	ENSGT01030000234625.B.d.f #26	ENSGT00940000159745	ENSGT00940000155693 #25	ENSGT00990000207089	ENSGT00940000159276	ENSGT00940000158980.b	ENSGT00550000074954	ENSGT00940000156145 #21	ENSGT00940000160947	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815 #37	ENSGT00930000151014 #36	ENSGT00940000154790.b #35	ENSGT00440000039837	ENSGT00940000153117.B.d	ENSGT00940000156723	ENSGT00910000147973	ENSGT00940000160884	ENSGT00390000005700 #12	ENSGT00390000006223.p #11	ENSGT00950000183147.A.a	ENSGT00390000007874
Odontoceti_a	ANCESTRAL SPECIES	2	ENSGT00940000153433.A #34	ENSGT00410000025698.b #33	ENSGT00390000012060 #32	ENSGT00940000155747 #31	ENSGT00940000162939	ENSGT00390000010925 #28	ENSGT01030000234625.B.d.f #26	ENSGT00940000159745	ENSGT00940000155693 #25	ENSGT00990000207089	ENSGT00940000159276	ENSGT00940000158980.b	ENSGT00550000074954	ENSGT00940000156145 #21	ENSGT00940000160947	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815 #37	ENSGT00930000151014 #36	ENSGT00940000154790.b #35	ENSGT00440000039837	ENSGT00940000153117.B.d	ENSGT00940000156723	ENSGT00910000147973	ENSGT00940000160884	ENSGT00390000005700 #12	ENSGT00390000006223.p #11	ENSGT00950000183147.A.a	ENSGT00390000007874
Odontoceti_b	ANCESTRAL SPECIES	2	ENSGT00940000163894	ENSGT00410000025698.b #33	ENSGT00390000012060 #32	ENSGT00940000155747 #31	ENSGT00940000162939	ENSGT00390000010925 #28	ENSGT00940000157848.e.b	ENSGT01030000234625.B.d.f #26	ENSGT00940000159745	ENSGT00940000155693 #25	ENSGT00940000159276	ENSGT00940000158980.b	ENSGT00550000074954	ENSGT00940000156145 #21	ENSGT00940000160947	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815 #37	ENSGT00930000151014 #36	ENSGT00940000154790.b #35	ENSGT00440000039837	ENSGT00940000153117.B.d	ENSGT00940000156723	ENSGT00910000147973	ENSGT00940000160884	ENSGT00390000005700 #12	ENSGT00390000006223.p #11	ENSGT00950000183147.A.a	ENSGT00390000007874
Monodontidae	ANCESTRAL SPECIES	5	ENSGT00940000153433.A.c #34	ENSGT00410000025698.b #33	ENSGT00390000012060 #32	ENSGT00940000155747 #31	ENSGT00940000162939	ENSGT00390000010925 #28	ENSGT00940000157848.e.b	ENSGT01030000234625.B.d.f #26	ENSGT00940000159745	ENSGT00940000155693 #25	ENSGT00940000159276	ENSGT00940000158980.b	ENSGT00550000074954	ENSGT00940000156145 #21	ENSGT00940000160947	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815 #37	ENSGT00930000151014 #36	ENSGT00940000154790.b #35	ENSGT00440000039837	ENSGT00940000153117.B.d	ENSGT00940000156723	ENSGT00910000147973	ENSGT00390000013771.d	ENSGT00940000160884	ENSGT00390000005700 #12	ENSGT00390000006223.p #11	ENSGT00950000183147.A.a
Narwhal	MODERN SPECIES	308	ENSMMNG00015018309	GPATCH2L (ENSMMNG00015018269) #33	IFT43 (ENSMMNG00015018141) #32	TGFB3 (ENSMMNG00015018097) #31	TTLL5 (ENSMMNG00015017967)	ERG28 (ENSMMNG00015017871) #28	ENSMMNG00015017843	FLVCR2 (ENSMMNG00015017770) #26	BATF (ENSMMNG00015017732)	JDP2 (ENSMMNG00015017702) #25	FOS (ENSMMNG00015017653)	ENSMMNG00015017621	TMED10 (ENSMMNG00015017595)	NEK9 (ENSMMNG00015017473) #21	ZC2HC1C (ENSMMNG00015017432)	ENSMMNG00015017395 #22	MLH3 (ENSMMNG00015017206) #23	EIF2B2 (ENSMMNG00015017142)	PGF (ENSMMNG00015017047)	RPS6KL1 (ENSMMNG00015017009) #37	DLST (ENSMMNG00015016974) #36	ENSMMNG00015016949 #35	YLPM1 (ENSMMNG00015016889)	ENSMMNG00015016846	FCF1 (ENSMMNG00015016775)	AREL1 (ENSMMNG00015016706)	ENSMMNG00015016679	LTBP2 (ENSMMNG00015016409)	ISCA2 (ENSMMNG00015016275) #12	ENSMMNG00015016236 #11	SYNDIG1L (ENSMMNG00015016210)
Beluga whale	MODERN SPECIES	24	VASH1 (ENSDLEG00000014847)	ENSDLEG00000014867 #34	GPATCH2L (ENSDLEG00000004311) #33	IFT43 (ENSDLEG00000004317) #32	TGFB3 (ENSDLEG00000004324) #31	TTLL5 (ENSDLEG00000004346)	ENSDLEG00000004414 #28	FLVCR2 (ENSDLEG00000004419) #26	ENSDLEG00000004427	BATF (ENSDLEG00000004433)	JDP2 (ENSDLEG00000004438) #25	FOS (ENSDLEG00000004446)	TMED10 (ENSDLEG00000004453)	NEK9 (ENSDLEG00000004467) #21	ZC2HC1C (ENSDLEG00000004476)	ACYP1 (ENSDLEG00000004481) #22	MLH3 (ENSDLEG00000004489) #23	EIF2B2 (ENSDLEG00000004507)	PGF (ENSDLEG00000004519)	RPS6KL1 (ENSDLEG00000004528) #37	DLST (ENSDLEG00000004541) #36	PROX2 (ENSDLEG00000004556) #35	YLPM1 (ENSDLEG00000004568)	FCF1 (ENSDLEG00000004582)	AREL1 (ENSDLEG00000004596)	ENSDLEG00000004609	ENSDLEG00000004614	ENSDLEG00000004617	ENSDLEG00000004618	ISCA2 (ENSDLEG00000004621) #12	NPC2 (ENSDLEG00000004626) #11
Vaquita	MODERN SPECIES	11	ENSPSNG00000012346	GPATCH2L (ENSPSNG00000012249) #33	IFT43 (ENSPSNG00000012173) #32	TGFB3 (ENSPSNG00000012105) #31	TTLL5 (ENSPSNG00000011911)	ENSPSNG00000011740 #28	ENSPSNG00000011652	FLVCR2 (ENSPSNG00000011492) #26	BATF (ENSPSNG00000011426)	JDP2 (ENSPSNG00000011391) #25	FOS (ENSPSNG00000011265)	ENSPSNG00000011136	TMED10 (ENSPSNG00000011085)	NEK9 (ENSPSNG00000010998) #21	ZC2HC1C (ENSPSNG00000010910)	ENSPSNG00000010828 #22	MLH3 (ENSPSNG00000010427) #23	EIF2B2 (ENSPSNG00000010274)	PGF (ENSPSNG00000010102)	RPS6KL1 (ENSPSNG00000010039) #37	DLST (ENSPSNG00000009959) #36	ENSPSNG00000009885 #35	YLPM1 (ENSPSNG00000009718)	FCF1 (ENSPSNG00000017954)	AREL1 (ENSPSNG00000017910)	ENSPSNG00000017877	LTBP2 (ENSPSNG00000017786)	ENSPSNG00000017665	ENSPSNG00000017639 #11	SYNDIG1L (ENSPSNG00000017585)	VRTN (ENSPSNG00000017561)
Dolphin	MODERN SPECIES	25														NEK9 (ENSTTRG00000001928) #21	ZC2HC1C (ENSTTRG00000001926)	ACYP1 (ENSTTRG00000001925) #22	MLH3 (ENSTTRG00000001923) #23	EIF2B2 (ENSTTRG00000001921)	PGF (ENSTTRG00000001918)	RPS6KL1 (ENSTTRG00000001917) #37	DLST (ENSTTRG00000001915) #36	PROX2 (ENSTTRG00000001912) #35	YLPM1 (ENSTTRG00000001907)
Blue whale	MODERN SPECIES	11	ESRRB (ENSBMSG00010007810) #34	ENSBMSG00010007793	GPATCH2L (ENSBMSG00010007772) #33	IFT43 (ENSBMSG00010007740) #32	TGFB3 (ENSBMSG00010007720) #31	TTLL5 (ENSBMSG00010007632)	ERG28 (ENSBMSG00010007579) #28	ENSBMSG00010007570	FLVCR2 (ENSBMSG00010007550) #26	JDP2 (ENSBMSG00010007385) #25	FOS (ENSBMSG00010007361)	ENSBMSG00010007349	TMED10 (ENSBMSG00010007334)	NEK9 (ENSBMSG00010007311) #21	ZC2HC1C (ENSBMSG00010007296)	ENSBMSG00010007280 #22	MLH3 (ENSBMSG00010007225) #23	EIF2B2 (ENSBMSG00010007177)	PGF (ENSBMSG00010007155)	RPS6KL1 (ENSBMSG00010007119) #37	DLST (ENSBMSG00010007068) #36	ENSBMSG00010007040 #35	YLPM1 (ENSBMSG00010007012)	ENSBMSG00010006988	ENSBMSG00010006980	AREL1 (ENSBMSG00010006958)	LTBP2 (ENSBMSG00010006856)	ISCA2 (ENSBMSG00010006777) #12	ENSBMSG00010006750 #11	SYNDIG1L (ENSBMSG00010006725)	ABCD4 (ENSBMSG00010006684)
Pecora	ANCESTRAL SPECIES	6	ENSGT00940000159057	ENSGT00390000012703.b	ENSGT00940000153433.A #34	ENSGT00410000025698.b #33	ENSGT00390000012060 #32	ENSGT00940000155747 #31	ENSGT00940000162939	ENSGT00390000010925.c.a #28	ENSGT01030000234625.B.d.f #26	ENSGT00940000159745	ENSGT00940000155693 #25	ENSGT00940000159276	ENSGT00550000074954	ENSGT00940000156145 #21	ENSGT00940000160947	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815 #37	ENSGT00930000151014 #36	ENSGT00940000154790.b #35	ENSGT00440000039837	ENSGT00940000153117.B.c.a	ENSGT00940000156723	ENSGT00900000143158	ENSGT00940000160884	ENSGT00390000005700 #12	ENSGT00390000006223 #11	ENSGT00950000183147.A.a	ENSGT00390000007874
Percora_a	ANCESTRAL SPECIES	8	ENSGT00940000159057	ENSGT00390000012703.b	ENSGT00940000153433.A #34	ENSGT00410000025698.b #33	ENSGT00390000012060 #32	ENSGT00940000155747 #31	ENSGT00940000162939	ENSGT00390000010925.c.a #28	ENSGT01030000234625.B.d.f #26	ENSGT00940000159745	ENSGT00940000155693 #25	ENSGT00940000159276	ENSGT00550000074954	ENSGT00940000156145 #21	ENSGT00940000160947	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815 #37	ENSGT00930000151014 #36	ENSGT00940000154790.b #35	ENSGT00440000039837	ENSGT00940000153117.B.c.a	ENSGT00940000156723	ENSGT00900000143158	ENSGT00940000160884	ENSGT00390000005700 #12	ENSGT00390000006223 #11	ENSGT00950000183147.A.a	ENSGT00390000007874
Bovidae	ANCESTRAL SPECIES	7	ENSGT00940000159057	ENSGT00390000012703.b	ENSGT00940000153433.A #34	ENSGT00410000025698.b #33	ENSGT00390000012060 #32	ENSGT00940000155747 #31	ENSGT00940000162939	ENSGT00390000010925.d #28	ENSGT01030000234625.B.d.f.e.a #26	ENSGT00940000159745	ENSGT00940000155693 #25	ENSGT00940000159276	ENSGT00550000074954	ENSGT00940000156145 #21	ENSGT00940000160947	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815 #37	ENSGT00930000151014 #36	ENSGT00940000154790.b #35	ENSGT00440000039837	ENSGT00940000153117.B.d	ENSGT00940000153117.B.c.a	ENSGT00940000156723	ENSGT00990000210987	ENSGT00900000143158	ENSGT00940000160884	ENSGT00390000005700 #12	ENSGT00390000006223 #11
Bovinae	ANCESTRAL SPECIES	11	ENSGT00940000153433.A #34	ENSGT00410000025698.b #33	ENSGT00390000012060 #32	ENSGT00940000155747 #31	ENSGT00940000162939	ENSGT00390000010925.c.b.a.a #28	ENSGT01030000234625.B.d.e.a #26	ENSGT00390000010925.d #28	ENSGT01030000234625.B.d.f.e.a #26	ENSGT00940000159745	ENSGT00940000155693 #25	ENSGT00940000159276	ENSGT00550000074954	ENSGT00940000156145 #21	ENSGT00940000160947	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815 #37	ENSGT00930000151014 #36	ENSGT00940000154790.b #35	ENSGT00440000039837	ENSGT00940000153117.B.c.a	ENSGT00940000156723	ENSGT00990000210987	ENSGT00900000143158	ENSGT00940000160884	ENSGT00390000005700 #12	ENSGT00390000006223 #11	ENSGT00950000183147.A.a
Bos	ANCESTRAL SPECIES	13	ENSGT00390000012703.b	ENSGT00940000153433.A #34	ENSGT00410000025698.b #33	ENSGT00390000012060 #32	ENSGT00940000155747 #31	ENSGT00940000162939	ENSGT00390000010925.c.b.a.a #28	ENSGT01030000234625.B.d.e.a #26	ENSGT01030000234625.B.d.f.e.a #26	ENSGT00940000159745	ENSGT00940000155693 #25	ENSGT00940000159276	ENSGT00550000074954	ENSGT00940000156145 #21	ENSGT00940000160947	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815 #37	ENSGT00930000151014 #36	ENSGT00940000154790.b #35	ENSGT00440000039837	ENSGT00940000153117.B.c.a	ENSGT00940000156723	ENSGT00990000210987	ENSGT00900000143158	ENSGT00940000160884	ENSGT00390000005700 #12	ENSGT00390000006223 #11	ENSGT00950000183147.A.a
Bos_a	ANCESTRAL SPECIES	1	ENSGT00390000012703.b	ENSGT00940000153433.A #34	ENSGT00410000025698.b #33	ENSGT00390000012060 #32	ENSGT00940000155747 #31	ENSGT00940000162939	ENSGT00390000010925.c.a #28	ENSGT00390000010925.c.b.a.a #28	ENSGT01030000234625.B.d.e.a #26	ENSGT00940000159745	ENSGT00940000155693 #25	ENSGT00940000159276	ENSGT00550000074954	ENSGT00940000156145 #21	ENSGT00940000160947	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815 #37	ENSGT00930000151014 #36	ENSGT00940000154790.b #35	ENSGT00440000039837	ENSGT00940000153117.B.d	ENSGT00940000156723	ENSGT00990000210987	ENSGT00900000143158	ENSGT00940000160884	ENSGT00390000005700 #12	ENSGT00390000006223 #11	ENSGT00950000183147.A.a
Wild yak	MODERN SPECIES	1230										BATF (ENSBMUG00000007615)	JDP2 (ENSBMUG00000007601) #25	FOS (ENSBMUG00000007590)	TMED10 (ENSBMUG00000007579)	NEK9 (ENSBMUG00000007574) #21	ZC2HC1C (ENSBMUG00000007566)	ENSBMUG00000007560 #22	MLH3 (ENSBMUG00000007555) #23	EIF2B2 (ENSBMUG00000007544)	PGF (ENSBMUG00000007539)	RPS6KL1 (ENSBMUG00000007535) #37	DLST (ENSBMUG00000007522) #36	ENSBMUG00000007517 #35	YLPM1 (ENSBMUG00000007507)	ENSBMUG00000007493	AREL1 (ENSBMUG00000007478)	ENSBMUG00000007472	LTBP2 (ENSBMUG00000007454)	ISCA2 (ENSBMUG00000007353) #12	NPC2 (ENSBMUG00000007338) #11	SYNDIG1L (ENSBMUG00000007323)	ABCD4 (ENSBMUG00000007298)
Domestic yak	MODERN SPECIES	2	ENSBGRG00000010664	ESRRB (ENSBGRG00000010484) #34	GPATCH2L (ENSBGRG00000010360) #33	IFT43 (ENSBGRG00000010136) #32	TGFB3 (ENSBGRG00000010079) #31	TTLL5 (ENSBGRG00000009576)	ERG28 (ENSBGRG00000009468) #28	ENSBGRG00000009425 #26	ENSBGRG00000009398	ENSBGRG00000009350	JDP2 (ENSBGRG00000009251) #25	FOS (ENSBGRG00000009096)	TMED10 (ENSBGRG00000009052)	NEK9 (ENSBGRG00000008973) #21	ZC2HC1C (ENSBGRG00000008922)	ENSBGRG00000008858 #22	MLH3 (ENSBGRG00000008456) #23	EIF2B2 (ENSBGRG00000008344)	PGF (ENSBGRG00000008113)	RPS6KL1 (ENSBGRG00000007964) #37	DLST (ENSBGRG00000007671) #36	ENSBGRG00000007645	ENSBGRG00000007592 #35	YLPM1 (ENSBGRG00000007101)	ENSBGRG00000006917	AREL1 (ENSBGRG00000006814)	ENSBGRG00000006783	ENSBGRG00000006766	LTBP2 (ENSBGRG00000006692)	ISCA2 (ENSBGRG00000006642) #12	NPC2 (ENSBGRG00000006618) #11
Bos_b	ANCESTRAL SPECIES	11	ENSGT00940000153433.A #34	ENSGT00410000025698.b #33	ENSGT00390000012060 #32	ENSGT00940000155747 #31	ENSGT00940000162910 #29	ENSGT00390000010925.c.a #28	ENSGT00940000162939	ENSGT01030000234625.B.d.f.e.b #26	ENSGT01030000234625.B.d.f.e.a #26	ENSGT00940000159745	ENSGT00940000155693 #25	ENSGT00940000159276	ENSGT00550000074954	ENSGT00940000156145 #21	ENSGT00940000160947	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815 #37	ENSGT00930000151014 #36	ENSGT00940000154790.b #35	ENSGT00440000039837	ENSGT00940000153117.B.c.b	ENSGT00940000153117.B.c.a	ENSGT00940000156723	ENSGT00900000143158	ENSGT00940000160884	ENSGT00390000005700 #12	ENSGT00390000006223 #11	ENSGT00950000183147.A.a
Cow	MODERN SPECIES	1	VASH1 (ENSBTAG00000008735)	ESRRB (ENSBTAG00000012285) #34	GPATCH2L (ENSBTAG00000003084) #33	IFT43 (ENSBTAG00000012005) #32	TGFB3 (ENSBTAG00000012004) #31	TTLL5 (ENSBTAG00000025403) #29	ERG28 (ENSBTAG00000011987) #28	ENSBTAG00000011985 #26	FLVCR2 (ENSBTAG00000040078) #26	BATF (ENSBTAG00000025405)	JDP2 (ENSBTAG00000009451) #25	FOS (ENSBTAG00000004322)	TMED10 (ENSBTAG00000005694)	NEK9 (ENSBTAG00000016612) #21	ZC2HC1C (ENSBTAG00000013983)	ACYP1 (ENSBTAG00000013992) #22	MLH3 (ENSBTAG00000019279) #23	EIF2B2 (ENSBTAG00000008664)	PGF (ENSBTAG00000013688)	RPS6KL1 (ENSBTAG00000006688) #37	DLST (ENSBTAG00000006463) #36	PROX2 (ENSBTAG00000015052) #35	YLPM1 (ENSBTAG00000008287)	FCF1 (ENSBTAG00000020381)	AREL1 (ENSBTAG00000020379)	ENSBTAG00000050205	LTBP2 (ENSBTAG00000021957)	ISCA2 (ENSBTAG00000021956) #12	NPC2 (ENSBTAG00000021955) #11	SYNDIG1L (ENSBTAG00000052950)	VRTN (ENSBTAG00000005774)
Hybrid Bos Indicus	MODERN SPECIES	1	ESRRB (ENSBIXG00005006060) #34	GPATCH2L (ENSBIXG00005024457) #33	IFT43 (ENSBIXG00005024523) #32	TGFB3 (ENSBIXG00005024563) #31	TTLL5 (ENSBIXG00005024691)	ENSBIXG00005024769	ENSBIXG00005024804 #26	ENSBIXG00005024965 #26	BATF (ENSBIXG00005025002)	ENSBIXG00005025026	JDP2 (ENSBIXG00005025082) #25	FOS (ENSBIXG00005025139)	TMED10 (ENSBIXG00005025171)	NEK9 (ENSBIXG00005025200) #21	ZC2HC1C (ENSBIXG00005025227)	ENSBIXG00005025275 #22	MLH3 (ENSBIXG00005025342) #23	EIF2B2 (ENSBIXG00005025394)	PGF (ENSBIXG00005025480)	RPS6KL1 (ENSBIXG00005025559) #37	DLST (ENSBIXG00005007402) #36	ENSBIXG00005025629 #35	YLPM1 (ENSBIXG00005025680)	ENSBIXG00005004386	ENSBIXG00005025743	AREL1 (ENSBIXG00005006183)	ENSBIXG00005025782	LTBP2 (ENSBIXG00005025977)	ENSBIXG00005026039 #12	NPC2 (ENSBIXG00005026057) #11	SYNDIG1L (ENSBIXG00005026092)
American bison	MODERN SPECIES	3282								ENSBBBG00000014438 #28	ENSBBBG00000014424 #26	BATF (ENSBBBG00000014403)	JDP2 (ENSBBBG00000001407) #25	FOS (ENSBBBG00000014386)	TMED10 (ENSBBBG00000014371)	NEK9 (ENSBBBG00000014365) #21	ZC2HC1C (ENSBBBG00000014352)	ENSBBBG00000014347 #22	MLH3 (ENSBBBG00000014333) #23	EIF2B2 (ENSBBBG00000003247)	PGF (ENSBBBG00000014283)	DLST (ENSBBBG00000003225) #36	ENSBBBG00000014217	PROX2 (ENSBBBG00000002886) #35	YLPM1 (ENSBBBG00000014199)	ENSBBBG00000014171	AREL1 (ENSBBBG00000003202)	LTBP2 (ENSBBBG00000003189)	ISCA2 (ENSBBBG00000014070) #12	NPC2 (ENSBBBG00000014061) #11	SYNDIG1L (ENSBBBG00000014055)	VRTN (ENSBBBG00000003129)	ABCD4 (ENSBBBG00000003123)
Caprinae	ANCESTRAL SPECIES	11	ENSGT00940000153433.A #34	ENSGT00410000025698.b #33	ENSGT00390000012060 #32	ENSGT00940000155747 #31	ENSGT00940000162939	ENSGT00390000010925.c.b.a.a #28	ENSGT00390000010925.c.a #28	ENSGT01030000234625.B.d.f.e.b #26	ENSGT01030000234625.B.d.f.e.a #26	ENSGT00940000159745	ENSGT00940000155693 #25	ENSGT00940000159276	ENSGT00550000074954	ENSGT00940000156145 #21	ENSGT00940000160947	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00550000074908	ENSGT00390000010172.y	ENSGT00940000160164	ENSGT00940000159815 #37	ENSGT00930000151014 #36	ENSGT00940000154790.b #35	ENSGT00440000039837	ENSGT00940000153117.B.d	ENSGT00940000156723	ENSGT00990000210987	ENSGT00900000143158	ENSGT00940000160884	ENSGT00390000005700 #12	ENSGT00390000006223 #11
Goat	MODERN SPECIES	1	IFT43 (ENSCHIG00000011518) #32	TGFB3 (ENSCHIG00000001922) #31	TTLL5 (ENSCHIG00000020468)	ENSCHIG00000021498	ENSCHIG00000010970 #28	ENSCHIG00000015140 #26	ENSCHIG00000025043 #28	ENSCHIG00000013593 #28	ENSCHIG00000019256 #26	BATF (ENSCHIG00000009266)	JDP2 (ENSCHIG00000017157) #25	FOS (ENSCHIG00000025384)	TMED10 (ENSCHIG00000022468)	NEK9 (ENSCHIG00000022547) #21	ZC2HC1C (ENSCHIG00000025982)	ENSCHIG00000021853 #22	MLH3 (ENSCHIG00000009803) #23	EIF2B2 (ENSCHIG00000020696)	ENSCHIG00000007844	PGF (ENSCHIG00000021989)	RPS6KL1 (ENSCHIG00000016739) #37	DLST (ENSCHIG00000015687) #36	PROX2 (ENSCHIG00000010770) #35	YLPM1 (ENSCHIG00000016765)	FCF1 (ENSCHIG00000012196)	AREL1 (ENSCHIG00000023661)	ENSCHIG00000021080	LTBP2 (ENSCHIG00000008338)	ISCA2 (ENSCHIG00000006650) #12	NPC2 (ENSCHIG00000019346) #11	SYNDIG1L (ENSCHIG00000019047)
Rambouillet Sheep	MODERN SPECIES	23	IFT43 (ENSOARG00020003134) #32	TGFB3 (ENSOARG00020003092) #31	ENSOARG00020019785	TTLL5 (ENSOARG00020018787)	ENSOARG00020018627 #26	ENSOARG00020018534 #28	ENSOARG00020018452 #28	ENSOARG00020018404 #28	BATF (ENSOARG00020018372)	JDP2 (ENSOARG00020018321) #25	FOS (ENSOARG00020018165)	ENSOARG00020018134	NEK9 (ENSOARG00020018089)	NEK9 (ENSOARG00020017867) #21	ZC2HC1C (ENSOARG00020017806)	ENSOARG00020017721 #22	EIF2B2 (ENSOARG00020017031)	ENSOARG00020017002	PGF (ENSOARG00020016856)	RPS6KL1 (ENSOARG00020016765) #37	DLST (ENSOARG00020016709) #36	ENSOARG00020016649 #35	YLPM1 (ENSOARG00020016026)	FCF1 (ENSOARG00020015954)	AREL1 (ENSOARG00020015742)	ENSOARG00020015685	ENSOARG00020015656	LTBP2 (ENSOARG00020014686)	ISCA2 (ENSOARG00020014514) #12	NPC2 (ENSOARG00020014455) #11	SYNDIG1L (ENSOARG00020014401)
Yarkand deer	MODERN SPECIES	28	ENSCHYG00000008013	NEURL4 (ENSCHYG00000007461)	GPS2 (ENSCHYG00000007354)	ENSCHYG00000007256	YBX2 (ENSCHYG00000007191)	SLC2A4 (ENSCHYG00000007096)	CLDN7 (ENSCHYG00000007033)	ELP5 (ENSCHYG00000006986)	CTDNEP1 (ENSCHYG00000006924)	GABARAP (ENSCHYG00000006879)	PHF23 (ENSCHYG00000006709)	DVL2 (ENSCHYG00000006392)	ACADVL (ENSCHYG00000022231)	DLG4 (ENSCHYG00000020909)	ENSCHYG00000020655	ENSCHYG00000020619 #22	ENSCHYG00000020562	ASGR2 (ENSCHYG00000020490)	CLEC10A (ENSCHYG00000020300)	SLC16A11 (ENSCHYG00000020413)	SLC16A13 (ENSCHYG00000020250)	BCL6B (ENSCHYG00000020161)	C17orf49 (ENSCHYG00000019976)	RNASEK (ENSCHYG00000019894)	ALOX12 (ENSCHYG00000019773)	ENSCHYG00000019674	ENSCHYG00000019632	ALOX15 (ENSCHYG00000019414)	PELP1 (ENSCHYG00000018970)	ARRB2 (ENSCHYG00000018719)	MED11 (ENSCHYG00000018568)
Laurasiatheria_b	ANCESTRAL SPECIES	3	ENSGT00390000012703.b	ENSGT00940000153433.A #34	ENSGT00410000025698.b #33	ENSGT00390000012060 #32	ENSGT00940000155747 #31	ENSGT00940000162939	ENSGT00940000162910 #29	ENSGT00390000010925 #28	ENSGT01030000234625.B.d.f #26	ENSGT00940000159745	ENSGT00940000155693 #25	ENSGT00940000159276	ENSGT00550000074954	ENSGT00940000156145 #21	ENSGT00940000160947	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815 #37	ENSGT00930000151014 #36	ENSGT00940000154790.b #35	ENSGT00440000039837	ENSGT00940000153117.B.c.b	ENSGT00530000064848	ENSGT00940000153117.B.d	ENSGT00940000156723	ENSGT00900000143158	ENSGT00940000160884	ENSGT00390000005700 #12	ENSGT00390000006223 #11
Carnivora	ANCESTRAL SPECIES		ENSGT00390000012703.b	ENSGT00940000153433.A #34	ENSGT00410000025698.b #33	ENSGT00390000012060 #32	ENSGT00940000155747 #31	ENSGT00940000162939	ENSGT00940000162910 #29	ENSGT00390000010925 #28	ENSGT01030000234625.B.d.f #26	ENSGT00940000159745	ENSGT00940000155693 #25	ENSGT00940000159276	ENSGT00550000074954	ENSGT00940000156145 #21	ENSGT00940000160947	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815 #37	ENSGT00930000151014 #36	ENSGT00940000154790.b #35	ENSGT00440000039837	ENSGT00940000153117.B.c.b	ENSGT00940000156723	ENSGT00900000143158	ENSGT00940000160884	ENSGT00390000005700 #12	ENSGT00390000006223 #11	ENSGT00950000183147.A.a	ENSGT00390000007874
Caniformia	ANCESTRAL SPECIES	15	ENSGT00390000012703.b	ENSGT00940000153433.A #34	ENSGT00410000025698.b #33	ENSGT00390000012060 #32	ENSGT00940000155747 #31	ENSGT00940000162939	ENSGT00940000162910 #29	ENSGT00390000010925 #28	ENSGT01030000234625.B.d.f #26	ENSGT00940000159745	ENSGT00940000155693 #25	ENSGT00940000159276	ENSGT00550000074954	ENSGT00940000156145 #21	ENSGT00940000160947	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815 #37	ENSGT00930000151014 #36	ENSGT00940000154790.b #35	ENSGT00440000039837	ENSGT00940000153117.B.d	ENSGT00940000153117.B.c.b	ENSGT00940000156723	ENSGT00900000143158	ENSGT00940000160884	ENSGT00390000005700 #12	ENSGT00390000006223 #11	ENSGT00950000183147.A.a
Caniformia_b	ANCESTRAL SPECIES	14	ENSGT00940000159057	ENSGT00390000012703.b	ENSGT00940000153433.A #34	ENSGT00410000025698.b #33	ENSGT00390000012060 #32	ENSGT00940000155747 #31	ENSGT00940000162939	ENSGT00390000010925 #28	ENSGT01030000234625.B.d.f #26	ENSGT00940000159745	ENSGT00940000155693 #25	ENSGT00940000159276	ENSGT00550000074954	ENSGT00940000156145 #21	ENSGT00940000160947	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815 #37	ENSGT00930000151014 #36	ENSGT00940000154790.b #35	ENSGT00440000039837	ENSGT00940000153117.B.c.b	ENSGT00940000156723	ENSGT00900000143158	ENSGT00940000160884	ENSGT00390000005700 #12	ENSGT00390000006223 #11	ENSGT00950000183147.A.a	ENSGT00390000007874
Ursidae	ANCESTRAL SPECIES	10	ENSGT00940000159057	ENSGT00390000012703.b	ENSGT00940000153433.A #34	ENSGT00410000025698.b #33	ENSGT00390000012060 #32	ENSGT00940000155747 #31	ENSGT00940000162939	ENSGT00390000010925 #28	ENSGT01030000234625.B.d.f #26	ENSGT00940000159745	ENSGT00940000155693 #25	ENSGT00940000159276	ENSGT00550000074954.y	ENSGT00940000156145 #21	ENSGT00940000160947	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815 #37	ENSGT00930000151014 #36	ENSGT00940000154790.b #35	ENSGT00440000039837	ENSGT00940000153117.B.c.b	ENSGT00940000156723	ENSGT00940000160884	ENSGT00390000005700 #12	ENSGT00390000006223.t #11	ENSGT00950000183147.A.a	ENSGT00390000007874	ENSGT00950000182955.a.a.b
Ursus	ANCESTRAL SPECIES	11	ENSGT00940000159057	ENSGT00390000012703.b	ENSGT00940000153433.A #34	ENSGT00410000025698.b #33	ENSGT00390000012060 #32	ENSGT00940000155747 #31	ENSGT00940000162939	ENSGT00390000010925 #28	ENSGT01030000234625.B.d.f #26	ENSGT00940000159745	ENSGT00940000155693 #25	ENSGT00940000159276	ENSGT00550000074954.y	ENSGT00940000156145 #21	ENSGT00940000160947	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815 #37	ENSGT00930000151014 #36	ENSGT00940000154790.b #35	ENSGT00440000039837	ENSGT00940000153117.B.c.b	ENSGT00940000156723	ENSGT00940000160884	ENSGT00390000005700 #12	ENSGT00390000006223.t #11	ENSGT00950000183147.A.a	ENSGT00390000007874	ENSGT00950000182955.a.a.b
American black bear	DUPLICATION
American black bear	MODERN SPECIES	60												ENSUAMG00000013342	ENSUAMG00000013345	NEK9 (ENSUAMG00000013350) #21	ZC2HC1C (ENSUAMG00000013505)	ENSUAMG00000013508 #22	MLH3 (ENSUAMG00000013512) #23	EIF2B2 (ENSUAMG00000013519)	PGF (ENSUAMG00000013523)	RPS6KL1 (ENSUAMG00000013529) #37	ENSUAMG00000013534 #36
American black bear	MODERN SPECIES	1903										CYC1 (ENSUAMG00000027817)	SHARPIN (ENSUAMG00000027816)	MAF1 (ENSUAMG00000027815)	WDR97 (ENSUAMG00000027814)	HGH1 (ENSUAMG00000027813)	ENSUAMG00000027812	ENSUAMG00000027810 #22
Polar bear	MODERN SPECIES	100	ANGEL1 (ENSUMAG00000007496)	VASH1 (ENSUMAG00000007499)	ESRRB (ENSUMAG00000007511) #34	GPATCH2L (ENSUMAG00000007530) #33	IFT43 (ENSUMAG00000007535) #32	TGFB3 (ENSUMAG00000007544) #31	TTLL5 (ENSUMAG00000007586)	ERG28 (ENSUMAG00000007701) #28	FLVCR2 (ENSUMAG00000007713) #26	BATF (ENSUMAG00000007730)	JDP2 (ENSUMAG00000007737) #25	FOS (ENSUMAG00000007758)	TMED10 (ENSUMAG00000007763)	NEK9 (ENSUMAG00000007797) #21	ZC2HC1C (ENSUMAG00000008115)	ENSUMAG00000008119 #22	MLH3 (ENSUMAG00000008145) #23	EIF2B2 (ENSUMAG00000008256)	ENSUMAG00000008261	ENSUMAG00000008264	RPS6KL1 (ENSUMAG00000008272) #37	DLST (ENSUMAG00000008287) #36	PROX2 (ENSUMAG00000008333) #35	YLPM1 (ENSUMAG00000008386)	ENSUMAG00000008797	AREL1 (ENSUMAG00000008802)	LTBP2 (ENSUMAG00000008811)	ISCA2 (ENSUMAG00000008826) #12	NPC2 (ENSUMAG00000008831) #11	SYNDIG1L (ENSUMAG00000008850)	ABCD4 (ENSUMAG00000008856)
Giant Panda	MODERN SPECIES	5	ANGEL1 (ENSAMEG00000018359)	VASH1 (ENSAMEG00000026174)	ESRRB (ENSAMEG00000018355) #34	GPATCH2L (ENSAMEG00000018354) #33	IFT43 (ENSAMEG00000018353) #32	TGFB3 (ENSAMEG00000018349) #31	TTLL5 (ENSAMEG00000018345)	ERG28 (ENSAMEG00000018343) #28	FLVCR2 (ENSAMEG00000018339) #26	BATF (ENSAMEG00000025412)	JDP2 (ENSAMEG00000018337) #25	FOS (ENSAMEG00000027409)	TMED10 (ENSAMEG00000018333)	NEK9 (ENSAMEG00000018328) #21	ZC2HC1C (ENSAMEG00000018327)	ENSAMEG00000025824 #22	MLH3 (ENSAMEG00000018320) #23	EIF2B2 (ENSAMEG00000018315)	ENSAMEG00000026677	RPS6KL1 (ENSAMEG00000018311) #37	DLST (ENSAMEG00000018307) #36	ENSAMEG00000029719 #35	YLPM1 (ENSAMEG00000018299)	FCF1 (ENSAMEG00000018296)	AREL1 (ENSAMEG00000018293)	LTBP2 (ENSAMEG00000018286)	ISCA2 (ENSAMEG00000018270) #12	NPC2 (ENSAMEG00000024412) #11	SYNDIG1L (ENSAMEG00000024409)	VRTN (ENSAMEG00000027533)	ABCD4 (ENSAMEG00000018272)
Mustelinae	ANCESTRAL SPECIES	14	ENSGT00940000159057	ENSGT00390000012703.b	ENSGT00940000153433.A #34	ENSGT00410000025698.b #33	ENSGT00390000012060 #32	ENSGT00940000155747 #31	ENSGT00940000162939	ENSGT00390000010925 #28	ENSGT01030000234625.B.d.f #26	ENSGT00940000159745	ENSGT00940000155693 #25	ENSGT00940000159276	ENSGT00550000074954	ENSGT00940000156145 #21	ENSGT00940000160947	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815 #37	ENSGT00930000151014 #36	ENSGT00940000154790.b #35	ENSGT00440000039837	ENSGT00940000153117.B.c.b	ENSGT00940000156723	ENSGT00900000143158	ENSGT00940000160884	ENSGT00390000005700 #12	ENSGT00390000006223 #11	ENSGT00950000183147.A.a	ENSGT00390000007874
American mink	DUPLICATION
American mink	MODERN SPECIES		VASH1 (ENSNVIG00000014689)	ESRRB (ENSNVIG00000014751) #34	GPATCH2L (ENSNVIG00000014775) #33	IFT43 (ENSNVIG00000014884) #32	TGFB3 (ENSNVIG00000014920) #31	TTLL5 (ENSNVIG00000014956)	ENSNVIG00000015195 #26	ERG28 (ENSNVIG00000015241) #28	ENSNVIG00000015265 #26	BATF (ENSNVIG00000015275)	JDP2 (ENSNVIG00000015295) #25	FOS (ENSNVIG00000015338)	TMED10 (ENSNVIG00000015385)	NEK9 (ENSNVIG00000015397) #21	ZC2HC1C (ENSNVIG00000015432)	ENSNVIG00000015447 #22	MLH3 (ENSNVIG00000015467) #23	ENSNVIG00000015550	PGF (ENSNVIG00000015578)	RPS6KL1 (ENSNVIG00000015611) #37	DLST (ENSNVIG00000015642) #36	ENSNVIG00000015674 #35	YLPM1 (ENSNVIG00000015689)	FCF1 (ENSNVIG00000015797)	K0317 (ENSNVIG00000015832)	ENSNVIG00000015839	LTBP2 (ENSNVIG00000015855)	ISCA2 (ENSNVIG00000015997) #12	NPC2 (ENSNVIG00000016016) #11	SYNDIG1L (ENSNVIG00000016048)	VRTN (ENSNVIG00000016057)
American mink	MODERN SPECIES	21	ENSNVIG00000016044	IL9 (ENSNVIG00000016058)	SLC25A48 (ENSNVIG00000016069)	CXCL14 (ENSNVIG00000016089)	NEUROG1 (ENSNVIG00000016109)	TIFAB (ENSNVIG00000016122)	MACROH2A1 (ENSNVIG00000016130)	PITX1 (ENSNVIG00000016229)	CTSR3 (ENSNVIG00000016243)	PCBD2 (ENSNVIG00000016278)	TXNDC15 (ENSNVIG00000016289)	C5orf24 (ENSNVIG00000016304)	DDX46 (ENSNVIG00000016315)	CAMLG (ENSNVIG00000016384)	SEC24A (ENSNVIG00000016430)	ENSNVIG00000016531 #22	SAR1B (ENSNVIG00000016537)	JADE2 (ENSNVIG00000016580)	CDKN2AIPNL (ENSNVIG00000016676)	UBE2B (ENSNVIG00000016690)	CDKL3 (ENSNVIG00000016706)	PPP2CA (ENSNVIG00000016768)	ENSNVIG00000016786	TCF7 (ENSNVIG00000016818)	ENSNVIG00000016919	C5orf15 (ENSNVIG00000016948)	FSTL4 (ENSNVIG00000016969)	HSPA4 (ENSNVIG00000017054)	ZCCHC10 (ENSNVIG00000017298)	AFF4 (ENSNVIG00000017333)	ENSNVIG00000017358
Ferret	MODERN SPECIES	164	ANGEL1 (ENSMPUG00000009009)	VASH1 (ENSMPUG00000009019)	ESRRB (ENSMPUG00000009025) #34	GPATCH2L (ENSMPUG00000009034) #33	IFT43 (ENSMPUG00000009048) #32	TGFB3 (ENSMPUG00000009060) #31	TTLL5 (ENSMPUG00000009065)	ERG28 (ENSMPUG00000009099) #28	FLVCR2 (ENSMPUG00000009132) #26	BATF (ENSMPUG00000009143)	JDP2 (ENSMPUG00000009147) #25	FOS (ENSMPUG00000009153)	TMED10 (ENSMPUG00000009159)	NEK9 (ENSMPUG00000009195) #21	ZC2HC1C (ENSMPUG00000009227)	ENSMPUG00000009236 #22	EIF2B2 (ENSMPUG00000009241)	MLH3 (ENSMPUG00000009249) #23	PGF (ENSMPUG00000009258)	RPS6KL1 (ENSMPUG00000009264) #37	DLST (ENSMPUG00000009271) #36	PROX2 (ENSMPUG00000009289) #35	YLPM1 (ENSMPUG00000009308)	FCF1 (ENSMPUG00000009321)	AREL1 (ENSMPUG00000009357)	LTBP2 (ENSMPUG00000009367)	ISCA2 (ENSMPUG00000009385) #12	NPC2 (ENSMPUG00000009402) #11	SYNDIG1L (ENSMPUG00000009458)	VRTN (ENSMPUG00000019665)	ABCD4 (ENSMPUG00000009467)
Canidae	DUPLICATION
Canidae	ANCESTRAL SPECIES	4	ENSGT00910000146860.b	ENSGT00940000153433.A #34	ENSGT00410000025698.b #33	ENSGT00390000012060 #32	ENSGT00940000155747 #31	ENSGT00940000162939	ENSGT00940000162910 #29	ENSGT00390000010925 #28	ENSGT01030000234625.B.d.f #26	ENSGT00940000159745	ENSGT00940000155693 #25	ENSGT00940000159276	ENSGT00550000074954	ENSGT00940000156145 #21	ENSGT00940000160947	ENSGT00390000011103.B.e #22	ENSGT00800000124176 #23	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815 #37	ENSGT00930000151014 #36	ENSGT00940000154790.b #35	ENSGT00670000098076.ab	ENSGT00440000039837	ENSGT00940000153117.B.d	ENSGT00940000156723	ENSGT00900000143158	ENSGT00940000160884	ENSGT00390000005700 #12	ENSGT00390000006223.q #11	ENSGT00950000183147.A.a
Red fox	DUPLICATION
Red fox	MODERN SPECIES	121	ENSVVUG00000021922	RAP1GAP2 (ENSVVUG00000021914)	CCDC92B (ENSVVUG00000021912)	CLUH (ENSVVUG00000021909)	PAFAH1B1 (ENSVVUG00000021894)	METTL16 (ENSVVUG00000021891)	MNT (ENSVVUG00000021886)	SGSM2 (ENSVVUG00000021786)	TSR1 (ENSVVUG00000021767)	SRR (ENSVVUG00000021765)	SMG6 (ENSVVUG00000021727)	HIC1 (ENSVVUG00000021725)	OVCA2 (ENSVVUG00000021722)	DPH1 (ENSVVUG00000021720)	RTN4RL1 (ENSVVUG00000021719)	ENSVVUG00000021718 #22	RPA1 (ENSVVUG00000021715)	SMYD4 (ENSVVUG00000021711)	SERPINF1 (ENSVVUG00000021710)	SERPINF2 (ENSVVUG00000021708)	WDR81 (ENSVVUG00000021704)	PRPF8 (ENSVVUG00000021695)	RILP (ENSVVUG00000021692)	SCARF1 (ENSVVUG00000021680)	SLC43A2 (ENSVVUG00000021676)	ENSVVUG00000021675	PITPNA (ENSVVUG00000021669)	INPP5K (ENSVVUG00000021666)	MYO1C (ENSVVUG00000021660)	CRK (ENSVVUG00000021658)	YWHAE (ENSVVUG00000021655)
Red fox	MODERN SPECIES	71				IFT43 (ENSVVUG00000006561) #32	TGFB3 (ENSVVUG00000006524) #31	TTLL5 (ENSVVUG00000005760)	ERG28 (ENSVVUG00000005717) #28	ENSVVUG00000005675	FLVCR2 (ENSVVUG00000005669) #26	BATF (ENSVVUG00000005666)	JDP2 (ENSVVUG00000005661) #25	FOS (ENSVVUG00000005656)	TMED10 (ENSVVUG00000005652)	NEK9 (ENSVVUG00000005288) #21	ZC2HC1C (ENSVVUG00000005265)	ENSVVUG00000005257 #22	MLH3 (ENSVVUG00000005236) #23	ENSVVUG00000005229	PGF (ENSVVUG00000005220)	RPS6KL1 (ENSVVUG00000005216) #37	DLST (ENSVVUG00000005214) #36	PROX2 (ENSVVUG00000005203) #35	ENSVVUG00000005198	YLPM1 (ENSVVUG00000005181)	AREL1 (ENSVVUG00000005173)	ENSVVUG00000005169	LTBP2 (ENSVVUG00000005123)	ISCA2 (ENSVVUG00000005108) #12	NPC2 (ENSVVUG00000005100) #11	SYNDIG1L (ENSVVUG00000005089)	VRTN (ENSVVUG00000005086)
Canis_lupus	ANCESTRAL SPECIES	8	ENSGT00940000153433.A #34	ENSGT00410000025698.b #33	ENSGT00390000012060 #32	ENSGT00940000155747 #31	ENSGT00940000162939	ENSGT00940000162910 #29	ENSGT00390000010925 #28	ENSGT01030000234625.B.d.f #26	ENSGT00940000159745	ENSGT00940000155693 #25	ENSGT00940000159276	ENSGT00940000163712	ENSGT00550000074954	ENSGT00940000156145 #21	ENSGT00940000160947	ENSGT00390000011103.B.e #22	ENSGT00800000124176 #23	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815 #37	ENSGT00930000151014 #36	ENSGT00940000154790.b #35	ENSGT00670000098076.ab	ENSGT00440000039837	ENSGT00940000153117.B.d	ENSGT00940000156723	ENSGT00940000160884	ENSGT00390000005700 #12	ENSGT00390000006223.q #11	ENSGT00950000183147.A.a	ENSGT00390000007874
Dingo	MODERN SPECIES	161	GPATCH2L (ENSCAFG00020001760) #33	IFT43 (ENSCAFG00020001777) #32	TGFB3 (ENSCAFG00020001790) #31	ENSCAFG00020001805	ENSCAFG00020001901 #29	ERG28 (ENSCAFG00020002048) #28	FLVCR2 (ENSCAFG00020002054) #26	ENSCAFG00020002058	BATF (ENSCAFG00020002062)	JDP2 (ENSCAFG00020002072) #25	FOS (ENSCAFG00020002082)	ENSCAFG00020002090	TMED10 (ENSCAFG00020002100)	NEK9 (ENSCAFG00020002125) #21	ZC2HC1C (ENSCAFG00020002433)	ENSCAFG00020002438 #22	MLH3 (ENSCAFG00020002443) #23	EIF2B2 (ENSCAFG00020002450)	PGF (ENSCAFG00020002459)	RPS6KL1 (ENSCAFG00020002467) #37	DLST (ENSCAFG00020002488) #36	PROX2 (ENSCAFG00020002501) #35	YLPM1 (ENSCAFG00020002557)	ENSCAFG00020003053	AREL1 (ENSCAFG00020003085)	LTBP2 (ENSCAFG00020003464)	ISCA2 (ENSCAFG00020003579) #12	ENSCAFG00020003586 #11	VRTN (ENSCAFG00020003595)	ENSCAFG00020003619	ENSCAFG00020003625
Dog	MODERN SPECIES	36	ENSCAFG00845005734	ESRRB (ENSCAFG00845005665) #34	GPATCH2L (ENSCAFG00845015980) #33	IFT43 (ENSCAFG00845015850) #32	TGFB3 (ENSCAFG00845015760) #31	TTLL5 (ENSCAFG00845015662)	ENSCAFG00845015573 #28	FLVCR2 (ENSCAFG00845015506) #26	BATF (ENSCAFG00845015458)	JDP2 (ENSCAFG00845015414) #25	FOS (ENSCAFG00845015304)	ENSCAFG00845015259	TMED10 (ENSCAFG00845015221)	NEK9 (ENSCAFG00845015171) #21	ZC2HC1C (ENSCAFG00845015123)	ACYP1 (ENSCAFG00845015059) #22	MLH3 (ENSCAFG00845014944) #23	EIF2B2 (ENSCAFG00845014894)	ENSCAFG00845014841	RPS6KL1 (ENSCAFG00845014807) #37	DLST (ENSCAFG00845014735) #36	ENSCAFG00845014690 #35	ENSCAFG00845014672	YLPM1 (ENSCAFG00845014628)	FCF1 (ENSCAFG00845014562)	AREL1 (ENSCAFG00845014520)	LTBP2 (ENSCAFG00845014362)	ISCA2 (ENSCAFG00845014307) #12	NPC2 (ENSCAFG00845014286) #11	ENSCAFG00845014257	ENSCAFG00845014241
Canidae	ANCESTRAL SPECIES																	ENSGT00390000011103.B.f #22
Canis_lupus	ANCESTRAL SPECIES																	ENSGT00390000011103.B.f #22
Dingo	MODERN SPECIES	138	CYTL1 (ENSCAFG00020010843)	STK32B (ENSCAFG00020010802)	EVC2 (ENSCAFG00020010756)	EVC (ENSCAFG00020010744)	CRMP1 (ENSCAFG00020010703)	ENSCAFG00020010696	ENSCAFG00020010691	JAKMIP1 (ENSCAFG00020010644)	UCHL1 (ENSCAFG00020010640)	APBB2 (ENSCAFG00020010619)	ENSCAFG00020010603	ENSCAFG00020010582	RBM47 (ENSCAFG00020010558)	CHRNA9 (ENSCAFG00020010556)	RHOH (ENSCAFG00020010553)	ENSCAFG00020010539 #22	N4BP2 (ENSCAFG00020010537)	PDS5A (ENSCAFG00020002596)	UBE2K (ENSCAFG00020002201)	SMIM14 (ENSCAFG00020002193)	UGDH (ENSCAFG00020002184)	LIAS (ENSCAFG00020002177)	RPL9 (ENSCAFG00020002170)	KLB (ENSCAFG00020002162)	RFC1 (ENSCAFG00020001300)	WDR19 (ENSCAFG00020000755)	KLHL5 (ENSCAFG00020000397)	TMEM156 (ENSCAFG00020000358)	FAM114A1 (ENSCAFG00020000247)	TLR6 (ENSCAFG00020000234)	TLR1 (ENSCAFG00020000220)
Dog	MODERN SPECIES	22	STK32B (ENSCAFG00845003289)	EVC2 (ENSCAFG00845003407)	EVC (ENSCAFG00845003606)	CRMP1 (ENSCAFG00845003689)	C4orf50 (ENSCAFG00845003740)	JAKMIP1 (ENSCAFG00845003793)	ENSCAFG00845003840	ENSCAFG00845003847	ENSCAFG00845003870	APBB2 (ENSCAFG00845003917)	NSUN7 (ENSCAFG00845003943)	RBM47 (ENSCAFG00845003991)	CHRNA9 (ENSCAFG00845004059)	RHOH (ENSCAFG00845004084)	N4BP2 (ENSCAFG00845004157)	ENSCAFG00845004204 #22	PDS5A (ENSCAFG00845004259)	ENSCAFG00845004455	UBE2K (ENSCAFG00845004479)	SMIM14 (ENSCAFG00845004549)	LIAS (ENSCAFG00845004611)	RPL9 (ENSCAFG00845004647)	KLB (ENSCAFG00845004657)	RFC1 (ENSCAFG00845004687)	WDR19 (ENSCAFG00845004729)	KLHL5 (ENSCAFG00845004801)	TMEM156 (ENSCAFG00845004925)	FAM114A1 (ENSCAFG00845004930)	TLR1 (ENSCAFG00845004950)	KLF3 (ENSCAFG00845004980)	TBC1D1 (ENSCAFG00845005015)
Red fox	MODERN SPECIES	1	ENSVVUG00000014927	CYTL1 (ENSVVUG00000014924)	STK32B (ENSVVUG00000014916)	EVC2 (ENSVVUG00000014895)	EVC (ENSVVUG00000014888)	CRMP1 (ENSVVUG00000014875)	ENSVVUG00000014864	ENSVVUG00000014858	JAKMIP1 (ENSVVUG00000014847)	ENSVVUG00000014831	ENSVVUG00000014827	APBB2 (ENSVVUG00000014809)	NSUN7 (ENSVVUG00000014781)	RBM47 (ENSVVUG00000014774)	CHRNA9 (ENSVVUG00000014771)	ENSVVUG00000014768 #22	N4BP2 (ENSVVUG00000014762)	ENSVVUG00000014758	ENSVVUG00000014754	PDS5A (ENSVVUG00000014731)	UBE2K (ENSVVUG00000014727)	SMIM14 (ENSVVUG00000014725)	UGDH (ENSVVUG00000014723)	LIAS (ENSVVUG00000014701)	RPL9 (ENSVVUG00000014677)	KLB (ENSVVUG00000014671)	RFC1 (ENSVVUG00000014641)	WDR19 (ENSVVUG00000014618)	KLHL5 (ENSVVUG00000014573)	TMEM156 (ENSVVUG00000014555)	FAM114A1 (ENSVVUG00000014548)
Felidae	ANCESTRAL SPECIES	1	ENSGT00940000159057	ENSGT00390000012703.b	ENSGT00940000153433.A #34	ENSGT00410000025698.b #33	ENSGT00390000012060 #32	ENSGT00940000155747 #31	ENSGT00940000162939	ENSGT00390000010925 #28	ENSGT01030000234625.B.d.f #26	ENSGT00940000159745	ENSGT00940000155693 #25	ENSGT00940000159276	ENSGT00550000074954	ENSGT00940000156145 #21	ENSGT00940000160947	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815 #37	ENSGT00930000151014 #36	ENSGT00940000154790.b #35	ENSGT00670000098076.y	ENSGT00440000039837	ENSGT00940000153117.B.c.b	ENSGT00940000156723	ENSGT00900000143158	ENSGT00940000160884	ENSGT00390000005700 #12	ENSGT00390000006223 #11	ENSGT00950000183147.A.a
Panthera	ANCESTRAL SPECIES	3	ENSGT00940000159057	ENSGT00390000012703.b	ENSGT00940000153433.A #34	ENSGT00410000025698.b #33	ENSGT00390000012060 #32	ENSGT00940000155747 #31	ENSGT00940000162939	ENSGT00390000010925 #28	ENSGT01030000234625.B.d.f #26	ENSGT00940000159745	ENSGT00940000155693 #25	ENSGT00940000159276	ENSGT00550000074954	ENSGT00940000156145 #21	ENSGT00940000160947	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815 #37	ENSGT00930000151014 #36	ENSGT00940000154790.b #35	ENSGT00670000098076.y	ENSGT00440000039837	ENSGT00940000153117.B.d	ENSGT00940000156723	ENSGT00900000143158	ENSGT00940000160884	ENSGT00390000005700 #12	ENSGT00390000006223 #11	ENSGT00950000183147.A.a
Tiger	MODERN SPECIES	490	ANGEL1 (ENSPTIG00000014991)	VASH1 (ENSPTIG00000015013)	ESRRB (ENSPTIG00000015059) #34	GPATCH2L (ENSPTIG00000015218) #33	IFT43 (ENSPTIG00000015242) #32	TGFB3 (ENSPTIG00000015253) #31	TTLL5 (ENSPTIG00000015299)	FLVCR2 (ENSPTIG00000015461) #26	ERG28 (ENSPTIG00000015488) #28	BATF (ENSPTIG00000015520)	JDP2 (ENSPTIG00000015529) #25	FOS (ENSPTIG00000015550)	TMED10 (ENSPTIG00000015563)	NEK9 (ENSPTIG00000015640) #21	ZC2HC1C (ENSPTIG00000015672)	ENSPTIG00000015684 #22	MLH3 (ENSPTIG00000015702) #23	EIF2B2 (ENSPTIG00000015724)	PGF (ENSPTIG00000015737)	RPS6KL1 (ENSPTIG00000015758) #37	DLST (ENSPTIG00000015793) #36	PROX2 (ENSPTIG00000015867) #35	YLPM1 (ENSPTIG00000015893)	ENSPTIG00000015948	AREL1 (ENSPTIG00000015968)	ENSPTIG00000015991	ISCA2 (ENSPTIG00000016002) #12	NPC2 (ENSPTIG00000016030) #11	SYNDIG1L (ENSPTIG00000016165)	VRTN (ENSPTIG00000016173)	ENSPTIG00000006594
Panthera_a	ANCESTRAL SPECIES	7	ENSGT00940000159057	ENSGT00390000012703.b	ENSGT00940000153433.A #34	ENSGT00410000025698.b #33	ENSGT00390000012060 #32	ENSGT00940000155747 #31	ENSGT00940000162939	ENSGT00390000010925 #28	ENSGT01030000234625.B.d.f #26	ENSGT00940000159745	ENSGT00940000155693 #25	ENSGT00940000159276	ENSGT00550000074954	ENSGT00940000156145 #21	ENSGT00940000160947	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815 #37	ENSGT00930000151014 #36	ENSGT00940000154790.b #35	ENSGT00670000098076.y	ENSGT00440000039837	ENSGT00940000153117.B.d	ENSGT00940000156723	ENSGT00900000143158	ENSGT00940000160884	ENSGT00390000005700 #12	ENSGT00390000006223 #11	ENSGT00950000183147.A.a
lion	MODERN SPECIES	6	ANGEL1 (ENSPLOG00000002570)	VASH1 (ENSPLOG00000002532)	ESRRB (ENSPLOG00000002494) #34	GPATCH2L (ENSPLOG00000002465) #33	IFT43 (ENSPLOG00000002436) #32	TGFB3 (ENSPLOG00000002406) #31	TTLL5 (ENSPLOG00000002332)	ERG28 (ENSPLOG00000002289) #28	FLVCR2 (ENSPLOG00000002234) #26	BATF (ENSPLOG00000002194)	JDP2 (ENSPLOG00000002179) #25	FOS (ENSPLOG00000002140)	TMED10 (ENSPLOG00000002116)	NEK9 (ENSPLOG00000002048) #21	ZC2HC1C (ENSPLOG00000002009)	ENSPLOG00000001988 #22	MLH3 (ENSPLOG00000001931) #23	EIF2B2 (ENSPLOG00000001880)	PGF (ENSPLOG00000001839)	RPS6KL1 (ENSPLOG00000001818) #37	DLST (ENSPLOG00000001785) #36	ENSPLOG00000001770 #35	YLPM1 (ENSPLOG00000001726)	ENSPLOG00000001674	AREL1 (ENSPLOG00000001636)	ENSPLOG00000001618	LTBP2 (ENSPLOG00000001497)	ISCA2 (ENSPLOG00000001378) #12	NPC2 (ENSPLOG00000001365) #11	SYNDIG1L (ENSPLOG00000001355)	VRTN (ENSPLOG00000001350)
leopard	MODERN SPECIES	109	ANGEL1 (ENSPPRG00000005702)	VASH1 (ENSPPRG00000005731)	ESRRB (ENSPPRG00000005841) #34	GPATCH2L (ENSPPRG00000007105) #33	IFT43 (ENSPPRG00000007836) #32	TGFB3 (ENSPPRG00000008430) #31	TTLL5 (ENSPPRG00000012572)	ERG28 (ENSPPRG00000012901) #28	FLVCR2 (ENSPPRG00000015729) #26	BATF (ENSPPRG00000016427)	JDP2 (ENSPPRG00000018181) #25	FOS (ENSPPRG00000019513)	TMED10 (ENSPPRG00000019952)	NEK9 (ENSPPRG00000022516) #21	ZC2HC1C (ENSPPRG00000024260)	ENSPPRG00000023976 #22	MLH3 (ENSPPRG00000022709) #23	EIF2B2 (ENSPPRG00000000321)	PGF (ENSPPRG00000001100)	RPS6KL1 (ENSPPRG00000003181) #37	DLST (ENSPPRG00000004226) #36	ENSPPRG00000004385 #35	ENSPPRG00000004808	YLPM1 (ENSPPRG00000005704)	ENSPPRG00000006398	AREL1 (ENSPPRG00000006846)	LTBP2 (ENSPPRG00000010146)	ISCA2 (ENSPPRG00000011662) #12	NPC2 (ENSPPRG00000012026) #11	SYNDIG1L (ENSPPRG00000012500)	ENSPPRG00000020217
Cat	MODERN SPECIES	237	ANGEL1 (ENSFCAG00000011721)	VASH1 (ENSFCAG00000037158)	ESRRB (ENSFCAG00000008979) #34	GPATCH2L (ENSFCAG00000014207) #33	IFT43 (ENSFCAG00000040391) #32	TGFB3 (ENSFCAG00000014204) #31	TTLL5 (ENSFCAG00000014200)	ERG28 (ENSFCAG00000014198) #28	FLVCR2 (ENSFCAG00000014196) #26	BATF (ENSFCAG00000036906)	JDP2 (ENSFCAG00000029464) #25	FOS (ENSFCAG00000025370)	TMED10 (ENSFCAG00000001472)	NEK9 (ENSFCAG00000025501) #21	ZC2HC1C (ENSFCAG00000006375)	ACYP1 (ENSFCAG00000022756) #22	MLH3 (ENSFCAG00000025866) #23	EIF2B2 (ENSFCAG00000028235)	PGF (ENSFCAG00000036808)	RPS6KL1 (ENSFCAG00000000756) #37	DLST (ENSFCAG00000006372) #36	PROX2 (ENSFCAG00000028658) #35	YLPM1 (ENSFCAG00000033466)	FCF1 (ENSFCAG00000022753)	AREL1 (ENSFCAG00000006368)	ENSFCAG00000053735	LTBP2 (ENSFCAG00000006366)	ISCA2 (ENSFCAG00000040858) #12	NPC2 (ENSFCAG00000029894) #11	SYNDIG1L (ENSFCAG00000006364)	VRTN (ENSFCAG00000006363)
Laurasiatheria_c	ANCESTRAL SPECIES	1	ENSGT00940000159057	ENSGT00390000012703.b	ENSGT00940000153433.A #34	ENSGT00410000025698.b #33	ENSGT00390000012060 #32	ENSGT00940000155747 #31	ENSGT00940000162939	ENSGT00390000010925 #28	ENSGT01030000234625.B.d.f #26	ENSGT00940000159745	ENSGT00940000155693 #25	ENSGT00940000159276	ENSGT00550000074954	ENSGT00940000156145 #21	ENSGT00940000160947	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815 #37	ENSGT00930000151014 #36	ENSGT00940000154790.b #35	ENSGT00440000039837	ENSGT00940000153117.B.c.b	ENSGT00530000064848	ENSGT00940000153117.B.d	ENSGT00940000156723	ENSGT00900000143158	ENSGT00940000160884	ENSGT00390000005700 #12	ENSGT00390000006223 #11
Equus	ANCESTRAL SPECIES	17	ENSGT00940000153433.A #34	ENSGT00410000025698.b #33	ENSGT00390000012060 #32	ENSGT00940000155747 #31	ENSGT00940000162939	ENSGT00390000010925 #28	ENSGT01030000234625.B.d.f.a #26	ENSGT01030000234625.B.d.e.b #26	ENSGT01030000234625.B.d.f.b.b #26	ENSGT00940000159745	ENSGT00940000155693 #25	ENSGT00940000159276	ENSGT00550000074954	ENSGT00940000156145 #21	ENSGT00940000160947	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815 #37	ENSGT00930000151014 #36	ENSGT00940000154790.b #35	ENSGT00440000039837	ENSGT00940000153117.B.d	ENSGT00940000156723	ENSGT00900000143158	ENSGT00940000160884	ENSGT00390000005700 #12	ENSGT00390000006223 #11	ENSGT00950000183147.A.a	ENSGT00390000007874
Donkey	MODERN SPECIES	27	IFT43 (ENSEASG00005020000) #32	TGFB3 (ENSEASG00005019995) #31	TTLL5 (ENSEASG00005019982)	ERG28 (ENSEASG00005030085) #28	ENSEASG00005019747 #26	ENSEASG00005028828 #26	ENSEASG00005026680 #26	ENSEASG00005037343 #26	ENSEASG00005019748 #26	BATF (ENSEASG00005037745)	ENSEASG00005025547 #25	FOS (ENSEASG00005012390)	TMED10 (ENSEASG00005012384)	NEK9 (ENSEASG00005012069) #21	ZC2HC1C (ENSEASG00005012049)	ENSEASG00005033366 #22	MLH3 (ENSEASG00005012041) #23	EIF2B2 (ENSEASG00005012035)	PGF (ENSEASG00005012033)	RPS6KL1 (ENSEASG00005012030) #37	DLST (ENSEASG00005012025) #36	ENSEASG00005032702 #35	YLPM1 (ENSEASG00005012016)	FCF1 (ENSEASG00005012011)	AREL1 (ENSEASG00005012006)	ENSEASG00005012000	LTBP2 (ENSEASG00005011719)	ISCA2 (ENSEASG00005032166) #12	NPC2 (ENSEASG00005023991) #11	SYNDIG1L (ENSEASG00005011683)	VRTN (ENSEASG00005011680)
Chiroptera	ANCESTRAL SPECIES	15	ENSGT00940000159057	ENSGT00390000012703.b	ENSGT00940000153433.A #34	ENSGT00410000025698.b #33	ENSGT00390000012060 #32	ENSGT00940000155747 #31	ENSGT00940000162939	ENSGT00390000010925 #28	ENSGT01030000234625.B.d.f #26	ENSGT00940000159745	ENSGT00940000155693 #25	ENSGT00940000159276	ENSGT00550000074954	ENSGT00940000156145 #21	ENSGT00940000160947	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815 #37	ENSGT00930000151014 #36	ENSGT00940000154790.b #35	ENSGT00440000039837	ENSGT00940000153117.B.c.b	ENSGT00530000064848	ENSGT00940000153117.B.d	ENSGT00940000156723	ENSGT00940000160884	ENSGT00390000005700 #12	ENSGT00390000006223 #11	ENSGT00950000183147.A.a
Megabat	MODERN SPECIES	922						IFT43 (ENSPVAG00000000683) #32	TGFB3 (ENSPVAG00000000681) #31	TTLL5 (ENSPVAG00000000679)	ERG28 (ENSPVAG00000000677) #28	FLVCR2 (ENSPVAG00000000675) #26	BATF (ENSPVAG00000000674)	JDP2 (ENSPVAG00000000672) #25	FOS (ENSPVAG00000000671)	TMED10 (ENSPVAG00000000670)	NEK9 (ENSPVAG00000000667) #21	ENSPVAG00000000666 #22	MLH3 (ENSPVAG00000000664) #23	EIF2B2 (ENSPVAG00000000663)	PGF (ENSPVAG00000000662)	RPS6KL1 (ENSPVAG00000000661) #37	DLST (ENSPVAG00000000660) #36	PROX2 (ENSPVAG00000000659) #35	YLPM1 (ENSPVAG00000000658)	FCF1 (ENSPVAG00000000657)	ENSPVAG00000000656	AREL1 (ENSPVAG00000000655)	LTBP2 (ENSPVAG00000000653)	ISCA2 (ENSPVAG00000000652) #12	NPC2 (ENSPVAG00000000651) #11	SYNDIG1L (ENSPVAG00000000650)	VRTN (ENSPVAG00000000649)
Microchiroptera	ANCESTRAL SPECIES	19	ENSGT00940000159057	ENSGT00390000012703.b	ENSGT00940000153433.A #34	ENSGT00410000025698.b #33	ENSGT00390000012060 #32	ENSGT00940000155747 #31	ENSGT00940000162939	ENSGT00390000010925 #28	ENSGT01030000234625.B.d.f #26	ENSGT00940000159745	ENSGT00940000155693 #25	ENSGT00940000159276	ENSGT00550000074954	ENSGT00940000156145 #21	ENSGT00940000160947	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815 #37	ENSGT00930000151014 #36	ENSGT00940000154790.b #35	ENSGT00440000039837	ENSGT00940000153117.B.d	ENSGT00940000156723	ENSGT00940000160884	ENSGT00390000005700 #12	ENSGT00390000006223 #11	ENSGT00950000183147.A.a	ENSGT00390000007874	ENSGT00950000182955.a.a.b
Microbat	MODERN SPECIES	1172				ESRRB (ENSMLUG00000014416) #34	GPATCH2L (ENSMLUG00000000927) #33	TGFB3 (ENSMLUG00000013406) #31	TTLL5 (ENSMLUG00000013381)	ERG28 (ENSMLUG00000013376) #28	FLVCR2 (ENSMLUG00000013362) #26	BATF (ENSMLUG00000013360)	ENSMLUG00000002256 #25	FOS (ENSMLUG00000003729)	ENSMLUG00000017125	NEK9 (ENSMLUG00000010541) #21	ZC2HC1C (ENSMLUG00000010524)	ENSMLUG00000007742 #22	MLH3 (ENSMLUG00000005949) #23	ENSMLUG00000005942	ENSMLUG00000005931	RPS6KL1 (ENSMLUG00000005917) #37	DLST (ENSMLUG00000005909) #36	PROX2 (ENSMLUG00000005898) #35	YLPM1 (ENSMLUG00000004983)	ENSMLUG00000022193	ENSMLUG00000012381	ENSMLUG00000029419 #12	NPC2 (ENSMLUG00000004558) #11	SYNDIG1L (ENSMLUG00000004551)	ABCD4 (ENSMLUG00000004541)	VSX2 (ENSMLUG00000010090)
Eulipotyphla	ANCESTRAL SPECIES	342														ENSGT00550000074954	ENSGT00940000156145 #21	ENSGT00390000011103.B #22	ENSGT00800000124176 #23
Common shrew	MODERN SPECIES	1448																ENSSARG00000003506 #22
Hedgehog	MODERN SPECIES	2058																ENSEEUG00000014106 #22	MLH3 (ENSEEUG00000014034) #23
Euarchontoglires	ANCESTRAL SPECIES	3	ENSGT00940000153433.A #34	ENSGT00410000025698.b #33	ENSGT00390000012060 #32	ENSGT00940000155747 #31	ENSGT00940000162939	ENSGT00940000162910 #29	ENSGT00390000010925 #28	ENSGT01030000234625.B.d #26	ENSGT00940000159745	ENSGT00940000155693 #25	ENSGT00990000207089	ENSGT00940000159276	ENSGT00550000074954	ENSGT00940000156145 #21	ENSGT00940000160947	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815 #37	ENSGT00930000151014 #36	ENSGT00940000154790.b #35	ENSGT00440000039837	ENSGT00940000153117.B.d	ENSGT00940000156723	ENSGT00900000143158	ENSGT00940000160884	ENSGT00390000005700 #12	ENSGT00390000006223 #11	ENSGT00950000183147.A.a	ENSGT00390000007874
Euarchontoglires_A	ANCESTRAL SPECIES	3	ENSGT00940000153433.A #34	ENSGT00410000025698.b #33	ENSGT00390000012060 #32	ENSGT00940000155747 #31	ENSGT00940000162939	ENSGT00940000162910 #29	ENSGT00390000010925 #28	ENSGT01030000234625.B.d #26	ENSGT00940000159745	ENSGT00940000155693 #25	ENSGT00990000207089	ENSGT00940000159276	ENSGT00550000074954	ENSGT00940000156145 #21	ENSGT00940000160947	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815 #37	ENSGT00930000151014 #36	ENSGT00940000154790.b #35	ENSGT00440000039837	ENSGT00940000153117.B.d	ENSGT00940000156723	ENSGT00900000143158	ENSGT00940000160884	ENSGT00390000005700 #12	ENSGT00390000006223 #11	ENSGT00950000183147.A.a	ENSGT00390000007874
Glires	ANCESTRAL SPECIES	12	ENSGT00940000153433.A #34	ENSGT00410000025698.b #33	ENSGT00390000012060 #32	ENSGT00940000155747 #31	ENSGT00940000162939	ENSGT00940000162910 #29	ENSGT00390000010925 #28	ENSGT01030000234625.B.d #26	ENSGT00940000159745	ENSGT00940000155693 #25	ENSGT00990000207089	ENSGT00940000159276	ENSGT00550000074954	ENSGT00940000156145 #21	ENSGT00940000160947	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815 #37	ENSGT00930000151014 #36	ENSGT00940000154790.b #35	ENSGT00440000039837	ENSGT00940000153117.B.d	ENSGT00940000156723	ENSGT00900000143158	ENSGT00940000160884	ENSGT00390000005700 #12	ENSGT00390000006223 #11	ENSGT00950000183147.A.a	ENSGT00390000007874
Rodentia	ANCESTRAL SPECIES	3	ENSGT00390000012703.b	ENSGT00940000153433.A #34	ENSGT00410000025698.b #33	ENSGT00390000012060 #32	ENSGT00940000155747 #31	ENSGT00940000162939	ENSGT00940000162910 #29	ENSGT00390000010925 #28	ENSGT01030000234625.B.d #26	ENSGT00940000159745	ENSGT00940000155693 #25	ENSGT00940000159276	ENSGT00550000074954	ENSGT00940000156145 #21	ENSGT00940000160947	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815 #37	ENSGT00930000151014 #36	ENSGT00940000154790.b #35	ENSGT00440000039837	ENSGT00940000153117.B.d	ENSGT00940000156723	ENSGT00900000143158	ENSGT00940000160884	ENSGT00390000005700 #12	ENSGT00390000006223 #11	ENSGT00950000183147.A.a	ENSGT00390000007874
Rodentia_A	ANCESTRAL SPECIES	2	ENSGT00390000012703.b	ENSGT00940000153433.A #34	ENSGT00410000025698.b #33	ENSGT00390000012060 #32	ENSGT00940000155747 #31	ENSGT00940000162939	ENSGT00940000162910 #29	ENSGT00390000010925 #28	ENSGT01030000234625.B.d #26	ENSGT00940000159745	ENSGT00940000155693 #25	ENSGT00940000159276	ENSGT00550000074954	ENSGT00940000156145 #21	ENSGT00940000160947	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815 #37	ENSGT00930000151014 #36	ENSGT00940000154790.b #35	ENSGT00440000039837	ENSGT00940000153117.B.d	ENSGT00940000156723	ENSGT00900000143158	ENSGT00940000160884	ENSGT00390000005700 #12	ENSGT00390000006223 #11	ENSGT00950000183147.A.a	ENSGT00390000007874
Sciuridae	DUPLICATION
Sciuridae	ANCESTRAL SPECIES	8	ENSGT00940000159057	ENSGT00390000012703.b	ENSGT00940000153433.A #34	ENSGT00410000025698.b #33	ENSGT00390000012060 #32	ENSGT00940000155747 #31	ENSGT00940000162910 #29	ENSGT00390000010925 #28	ENSGT01030000234625.B.d #26	ENSGT00940000159745	ENSGT00940000155693 #25	ENSGT00940000159276	ENSGT00550000074954	ENSGT00940000156145 #21	ENSGT00940000160947	ENSGT00390000011103.B.g #22	ENSGT00800000124176 #23	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815 #37	ENSGT00930000151014 #36	ENSGT00940000154790.b #35	ENSGT00440000039837	ENSGT00940000153117.B.d	ENSGT00940000156723	ENSGT00900000143158	ENSGT00940000160884	ENSGT00390000005700 #12	ENSGT00390000006223 #11	ENSGT00950000183147.A.a	ENSGT00390000007874
Marmotini	ANCESTRAL SPECIES	27	ENSGT00940000159057	ENSGT00390000012703.b	ENSGT00940000153433.A #34	ENSGT00410000025698.b #33	ENSGT00390000012060 #32	ENSGT00940000155747 #31	ENSGT00940000162910 #29	ENSGT00390000010925 #28	ENSGT01030000234625.B.d #26	ENSGT00940000159745	ENSGT00940000155693 #25	ENSGT00940000159276	ENSGT00550000074954	ENSGT00940000156145 #21	ENSGT00940000160947	ENSGT00390000011103.B.g #22	ENSGT00800000124176 #23	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815 #37	ENSGT00930000151014 #36	ENSGT00940000154790.b #35	ENSGT00440000039837	ENSGT00940000153117.B.d	ENSGT00940000156723	ENSGT00900000143158	ENSGT00940000160884	ENSGT00390000005700 #12	ENSGT00390000006223 #11	ENSGT00950000183147.A.a	ENSGT00390000007874
Marmotini_b	DUPLICATION
Marmotini_b	ANCESTRAL SPECIES	31	ENSGT00940000159057	ENSGT00390000012703.b	ENSGT00940000153433.A #34	ENSGT00410000025698.b #33	ENSGT00390000012060 #32	ENSGT00940000155747 #31	ENSGT00940000162910 #29	ENSGT00390000010925 #28	ENSGT01030000234625.B.d #26	ENSGT00940000159745	ENSGT00940000155693 #25	ENSGT00940000159276	ENSGT00550000074954	ENSGT00940000156145 #21	ENSGT00940000160947	ENSGT00390000011103.B.g.a #22	ENSGT00800000124176 #23	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815 #37	ENSGT00930000151014 #36	ENSGT00940000154790.b #35	ENSGT00440000039837	ENSGT00940000153117.B.d	ENSGT00940000156723	ENSGT00900000143158	ENSGT00940000160884	ENSGT00390000005700 #12	ENSGT00390000006223 #11	ENSGT00950000183147.A.a	ENSGT00390000007874
Arctic ground squirrel	MODERN SPECIES	8	ANGEL1 (ENSUPAG00010013343)	VASH1 (ENSUPAG00010013354)	ESRRB (ENSUPAG00010013373) #34	IFT43 (ENSUPAG00010013527) #32	TGFB3 (ENSUPAG00010013546) #31	ENSUPAG00010013566 #29	ERG28 (ENSUPAG00010013948) #28	FLVCR2 (ENSUPAG00010013953) #26	BATF (ENSUPAG00010013971)	ENSUPAG00010013983	JDP2 (ENSUPAG00010013987) #25	FOS (ENSUPAG00010013998)	TMED10 (ENSUPAG00010014006)	NEK9 (ENSUPAG00010014023) #21	ZC2HC1C (ENSUPAG00010014064)	ENSUPAG00010014073 #22	MLH3 (ENSUPAG00010014100) #23	EIF2B2 (ENSUPAG00010014118)	PGF (ENSUPAG00010014126)	RPS6KL1 (ENSUPAG00010014140) #37	DLST (ENSUPAG00010014158) #36	PROX2 (ENSUPAG00010014197) #35	YLPM1 (ENSUPAG00010014207)	ENSUPAG00010014237	AREL1 (ENSUPAG00010014265)	ENSUPAG00010014316	LTBP2 (ENSUPAG00010014320)	ISCA2 (ENSUPAG00010014470) #12	NPC2 (ENSUPAG00010014477) #11	SYNDIG1L (ENSUPAG00010014486)	VRTN (ENSUPAG00010014491)
Squirrel	MODERN SPECIES	88	ANGEL1 (ENSSTOG00000011127)	VASH1 (ENSSTOG00000021153)	ESRRB (ENSSTOG00000028550) #34	GPATCH2L (ENSSTOG00000015086) #33	IFT43 (ENSSTOG00000014423) #32	TGFB3 (ENSSTOG00000028492) #31	TTLL5 (ENSSTOG00000014397)	ERG28 (ENSSTOG00000014394) #28	FLVCR2 (ENSSTOG00000014389) #26	BATF (ENSSTOG00000024626)	JDP2 (ENSSTOG00000026831) #25	FOS (ENSSTOG00000003005)	ENSSTOG00000007392	NEK9 (ENSSTOG00000007339) #21	ZC2HC1C (ENSSTOG00000007331)	ENSSTOG00000007327 #22	MLH3 (ENSSTOG00000027479) #23	EIF2B2 (ENSSTOG00000007283)	PGF (ENSSTOG00000023041)	RPS6KL1 (ENSSTOG00000014613) #37	DLST (ENSSTOG00000014603) #36	PROX2 (ENSSTOG00000023253) #35	YLPM1 (ENSSTOG00000014581)	FCF1 (ENSSTOG00000008083)	AREL1 (ENSSTOG00000008036)	ENSSTOG00000034311	LTBP2 (ENSSTOG00000007996)	ISCA2 (ENSSTOG00000020219) #12	NPC2 (ENSSTOG00000007987) #11	SYNDIG1L (ENSSTOG00000007981)	VRTN (ENSSTOG00000021434)
Marmotini_b	ANCESTRAL SPECIES																	ENSGT00390000011103.B.g.b #22
Squirrel	MODERN SPECIES	71	HDC (ENSSTOG00000002266)	GABPB1 (ENSSTOG00000016137)	USP8 (ENSSTOG00000005924)	USP50 (ENSSTOG00000000278)	TRPM7 (ENSSTOG00000000280)	SPPL2A (ENSSTOG00000005136)	AP4E1 (ENSSTOG00000005959)	TNFAIP8L3 (ENSSTOG00000005995)	CYP19A1 (ENSSTOG00000006011)	GLDN (ENSSTOG00000007455)	DMXL2 (ENSSTOG00000029061)	SCG3 (ENSSTOG00000015355)	LYSMD2 (ENSSTOG00000015371)	TMOD3 (ENSSTOG00000000249)	LEO1 (ENSSTOG00000020671)	ENSSTOG00000032278 #22	ENSSTOG00000031277	ENSSTOG00000032245	ENSSTOG00000019474	GNB5 (ENSSTOG00000014031)	MYO5C (ENSSTOG00000014041)	MYO5A (ENSSTOG00000007106)	ENSSTOG00000003677	ATOSA (ENSSTOG00000024505)	ONECUT1 (ENSSTOG00000028083)	WDR72 (ENSSTOG00000015381)	UNC13C (ENSSTOG00000026192)	RSL24D1 (ENSSTOG00000009408)	RAB27A (ENSSTOG00000025489)	PIGB (ENSSTOG00000008450)	CCPG1 (ENSSTOG00000008480)
Arctic ground squirrel	MODERN SPECIES	4	GABPB1 (ENSUPAG00010008257)	USP8 (ENSUPAG00010008213)	USP50 (ENSUPAG00010008191)	TRPM7 (ENSUPAG00010008060)	SPPL2A (ENSUPAG00010008000)	AP4E1 (ENSUPAG00010007897)	TNFAIP8L3 (ENSUPAG00010007881)	ENSUPAG00010007875	CYP19A1 (ENSUPAG00010007854)	GLDN (ENSUPAG00010007827)	DMXL2 (ENSUPAG00010007657)	SCG3 (ENSUPAG00010007640)	LYSMD2 (ENSUPAG00010007635)	TMOD2 (ENSUPAG00010007615)	TMOD3 (ENSUPAG00010007589)	ENSUPAG00010007580 #22	ENSUPAG00010007578	LEO1 (ENSUPAG00010007559)	MAPK6 (ENSUPAG00010007550)	ENSUPAG00010007540	GNB5 (ENSUPAG00010007508)	MYO5C (ENSUPAG00010007472)	MYO5A (ENSUPAG00010007094)	ARPP19 (ENSUPAG00010007068)	ATOSA (ENSUPAG00010007022)	ONECUT1 (ENSUPAG00010007007)	WDR72 (ENSUPAG00010006964)	UNC13C (ENSUPAG00010006875)	ENSUPAG00010006847
Alpin marmot	MODERN SPECIES	1	ANGEL1 (ENSMMMG00000019233)	VASH1 (ENSMMMG00000019229)	ESRRB (ENSMMMG00000019197) #34	GPATCH2L (ENSMMMG00000019187) #33	IFT43 (ENSMMMG00000019160) #32	TGFB3 (ENSMMMG00000019151) #31	ENSMMMG00000019046 #29	ERG28 (ENSMMMG00000019015) #28	FLVCR2 (ENSMMMG00000019011) #26	BATF (ENSMMMG00000018997)	JDP2 (ENSMMMG00000018991) #25	FOS (ENSMMMG00000018959)	TMED10 (ENSMMMG00000018955)	NEK9 (ENSMMMG00000018929) #21	ZC2HC1C (ENSMMMG00000018927)	ENSMMMG00000018919 #22	MLH3 (ENSMMMG00000018877) #23	EIF2B2 (ENSMMMG00000018871)	ENSMMMG00000018834	RPS6KL1 (ENSMMMG00000018824) #37	DLST (ENSMMMG00000018811) #36	PROX2 (ENSMMMG00000018802) #35	ENSMMMG00000018793	YLPM1 (ENSMMMG00000016573)	FCF1 (ENSMMMG00000016553)	AREL1 (ENSMMMG00000016543)	LTBP2 (ENSMMMG00000016333)	ISCA2 (ENSMMMG00000016320) #12	NPC2 (ENSMMMG00000016316) #11	SYNDIG1L (ENSMMMG00000016305)	VRTN (ENSMMMG00000016304)
Eurasian red squirrel	MODERN SPECIES	11	ANGEL1 (ENSSVLG00005022057)	VASH1 (ENSSVLG00005022110)	ESRRB (ENSSVLG00005022191) #34	GPATCH2L (ENSSVLG00005022307) #33	IFT43 (ENSSVLG00005022465) #32	TGFB3 (ENSSVLG00005022514) #31	TTLL5 (ENSSVLG00005022638)	FLVCR2 (ENSSVLG00005022704) #26	ERG28 (ENSSVLG00005022750) #28	BATF (ENSSVLG00005022782)	JDP2 (ENSSVLG00005022819) #25	FOS (ENSSVLG00005022864)	TMED10 (ENSSVLG00005022941)	NEK9 (ENSSVLG00005022971) #21	ZC2HC1C (ENSSVLG00005023028)	ENSSVLG00005023086 #22	MLH3 (ENSSVLG00005023158) #23	EIF2B2 (ENSSVLG00005023236)	PGF (ENSSVLG00005023268)	RPS6KL1 (ENSSVLG00005023325) #37	DLST (ENSSVLG00005023360) #36	ENSSVLG00005023416 #35	YLPM1 (ENSSVLG00005023475)	FCF1 (ENSSVLG00005023579)	AREL1 (ENSSVLG00005023654)	ENSSVLG00005023700	LTBP2 (ENSSVLG00005023777)	ISCA2 (ENSSVLG00005005331) #12	NPC2 (ENSSVLG00005005374) #11	SYNDIG1L (ENSSVLG00005005404)	VRTN (ENSSVLG00005005435)
Sciuridae	ANCESTRAL SPECIES																	ENSGT00390000011103.B.h #22
Marmotini	ANCESTRAL SPECIES																	ENSGT00390000011103.B.h #22
Marmotini_b	ANCESTRAL SPECIES																	ENSGT00390000011103.B.h #22
Arctic ground squirrel	MODERN SPECIES	41	HCN1 (ENSUPAG00010005339)	EMB (ENSUPAG00010005328)	ENSUPAG00010005320	PARP8 (ENSUPAG00010005280)	ENSUPAG00010005266	ISL1 (ENSUPAG00010005249)	PELO (ENSUPAG00010005244)	ITGA1 (ENSUPAG00010005218)	ITGA2 (ENSUPAG00010005187)	MOCS2 (ENSUPAG00010005171)	FST (ENSUPAG00010005146)	NDUFS4 (ENSUPAG00010005134)	ARL15 (ENSUPAG00010005094)	HSPB3 (ENSUPAG00010005091)	SNX18 (ENSUPAG00010005081)	ENSUPAG00010005077 #22	ENSUPAG00010005064	ESM1 (ENSUPAG00010005059)	GZMK (ENSUPAG00010005054)	ENSUPAG00010005050	GZMA (ENSUPAG00010005045)	GPX8 (ENSUPAG00010005041)	CDC20B (ENSUPAG00010004988)	MCIDAS (ENSUPAG00010004982)	CCNO (ENSUPAG00010004974)	DHX29 (ENSUPAG00010004963)	MTREX (ENSUPAG00010004859)	PLPP1 (ENSUPAG00010004851)	SLC38A9 (ENSUPAG00010004843)	DDX4 (ENSUPAG00010004791)	IL31RA (ENSUPAG00010004767)
Alpin marmot	MODERN SPECIES	46	EMB (ENSMMMG00000009831)	PARP8 (ENSMMMG00000009741)	ENSMMMG00000009728	ISL1 (ENSMMMG00000009692)	PELO (ENSMMMG00000009680)	ITGA1 (ENSMMMG00000009646)	ITGA2 (ENSMMMG00000009586)	MOCS2 (ENSMMMG00000009556)	ENSMMMG00000009548	FST (ENSMMMG00000009517)	NDUFS4 (ENSMMMG00000009503)	ARL15 (ENSMMMG00000009482)	HSPB3 (ENSMMMG00000009472)	ENSMMMG00000009464	ENSMMMG00000009450	ENSMMMG00000009448 #22	ESM1 (ENSMMMG00000009444)	GZMK (ENSMMMG00000009433)	ENSMMMG00000009395	GZMA (ENSMMMG00000009387)	GPX8 (ENSMMMG00000009378)	CDC20B (ENSMMMG00000009279)	ENSMMMG00000009275	MCIDAS (ENSMMMG00000009257)	CCNO (ENSMMMG00000009246)	DHX29 (ENSMMMG00000009209)	MTREX (ENSMMMG00000009158)	PLPP1 (ENSMMMG00000009061)	SLC38A9 (ENSMMMG00000009039)	DDX4 (ENSMMMG00000008971)	IL31RA (ENSMMMG00000008944)
Hystricomorpha	ANCESTRAL SPECIES	33	ENSGT00390000012703.b	ENSGT00940000153433.A #34	ENSGT00410000025698.b #33	ENSGT00390000012060 #32	ENSGT00940000155747 #31	ENSGT00940000162939	ENSGT00940000162910 #29	ENSGT00390000010925 #28	ENSGT01030000234625.B.d #26	ENSGT00940000159745	ENSGT00940000155693 #25	ENSGT00940000159276	ENSGT00550000074954	ENSGT00940000156145 #21	ENSGT00940000160947	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815 #37	ENSGT00930000151014 #36	ENSGT00940000154790.b #35	ENSGT00440000039837	ENSGT00940000153117.B.d	ENSGT00940000156723	ENSGT00900000143158	ENSGT00940000160884	ENSGT00390000005700 #12	ENSGT00390000006223 #11	ENSGT00950000183147.A.a	ENSGT00390000007874
Hystricomorpha_a	ANCESTRAL SPECIES	27	ENSGT00390000012703.b	ENSGT00940000153433.A #34	ENSGT00410000025698.b #33	ENSGT00390000012060 #32	ENSGT00940000155747 #31	ENSGT00940000162939	ENSGT00940000162910 #29	ENSGT00390000010925 #28	ENSGT01030000234625.B.d #26	ENSGT00940000159745	ENSGT00940000155693 #25	ENSGT00940000159276	ENSGT00550000074954	ENSGT00940000156145 #21	ENSGT00940000160947	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815 #37	ENSGT00930000151014 #36	ENSGT00940000154790.b #35	ENSGT00440000039837	ENSGT00940000153117.B.d	ENSGT00940000156723	ENSGT00940000160884	ENSGT00390000005700 #12	ENSGT00390000006223 #11	ENSGT00950000183147.A.a	ENSGT00390000007874	ENSGT00950000182955.a.a.b
Hystricomorpha_b	ANCESTRAL SPECIES	46										ENSGT00940000159745	ENSGT00940000155693 #25	ENSGT00940000159276	ENSGT00550000074954	ENSGT00940000156145 #21	ENSGT00940000160947	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815 #37	ENSGT00930000151014 #36	ENSGT00940000154790.b #35	ENSGT00440000039837	ENSGT00940000153117.B.d	ENSGT00940000156723	ENSGT00940000160884	ENSGT00390000005700 #12	ENSGT00390000006223 #11	ENSGT00950000183147.A.a	ENSGT00390000007874	ENSGT00950000182955.a.a.b
Long-tailed chinchilla	MODERN SPECIES	230									BATF (ENSCLAG00000005182)	JDP2 (ENSCLAG00000005213) #25	FOS (ENSCLAG00000005234)	ENSCLAG00000005287	ENSCLAG00000017571	NEK9 (ENSCLAG00000002894) #21	ZC2HC1C (ENSCLAG00000003052)	ENSCLAG00000003079 #22	MLH3 (ENSCLAG00000003183) #23	EIF2B2 (ENSCLAG00000003404)	PGF (ENSCLAG00000003475)	RPS6KL1 (ENSCLAG00000004091) #37	DLST (ENSCLAG00000004328) #36	PROX2 (ENSCLAG00000004620) #35	YLPM1 (ENSCLAG00000004848)	FCF1 (ENSCLAG00000005606)	AREL1 (ENSCLAG00000005714)	LTBP2 (ENSCLAG00000005951)	ISCA2 (ENSCLAG00000006410) #12	NPC2 (ENSCLAG00000006435) #11	SYNDIG1L (ENSCLAG00000006492)	VRTN (ENSCLAG00000006514)	ABCD4 (ENSCLAG00000006557)
Degu	MODERN SPECIES	48									BATF (ENSODEG00000015516)	JDP2 (ENSODEG00000015424) #25	ENSODEG00000015265	FOS (ENSODEG00000015631)	TMED10 (ENSODEG00000015608)	NEK9 (ENSODEG00000015192) #21	ZC2HC1C (ENSODEG00000015376)	ENSODEG00000015487 #22	ENSODEG00000015428 #23	ENSODEG00000015442	RPS6KL1 (ENSODEG00000015734) #37	ENSODEG00000016718 #36	PROX2 (ENSODEG00000015273) #35	YLPM1 (ENSODEG00000015362)	ENSODEG00000015318	AREL1 (ENSODEG00000015900)	LTBP2 (ENSODEG00000015966)	ENSODEG00000015593 #12	NPC2 (ENSODEG00000015454) #11	SYNDIG1L (ENSODEG00000015191)	VRTN (ENSODEG00000015577)	ABCD4 (ENSODEG00000015190)	VSX2 (ENSODEG00000015486)
Guinea pig	MODERN SPECIES	20	VASH1 (ENSCPOG00000010147)	ESRRB (ENSCPOG00000025190) #34	GPATCH2L (ENSCPOG00000007359) #33	IFT43 (ENSCPOG00000035589) #32	TGFB3 (ENSCPOG00000034182) #31	ENSCPOG00000005623 #29	ERG28 (ENSCPOG00000005620) #28	FLVCR2 (ENSCPOG00000005615) #26	BATF (ENSCPOG00000039637)	JDP2 (ENSCPOG00000037507) #25	ENSCPOG00000039224	FOS (ENSCPOG00000033284)	TMED10 (ENSCPOG00000004567)	NEK9 (ENSCPOG00000003990) #21	ZC2HC1C (ENSCPOG00000003986)	ENSCPOG00000036680 #22	MLH3 (ENSCPOG00000024679) #23	EIF2B2 (ENSCPOG00000008155)	PGF (ENSCPOG00000038491)	RPS6KL1 (ENSCPOG00000011776) #37	ENSCPOG00000009316 #36	PROX2 (ENSCPOG00000009322) #35	YLPM1 (ENSCPOG00000027568)	ENSCPOG00000001149	AREL1 (ENSCPOG00000001146)	LTBP2 (ENSCPOG00000001143)	ISCA2 (ENSCPOG00000035413) #12	NPC2 (ENSCPOG00000001141) #11	SYNDIG1L (ENSCPOG00000012367)	VRTN (ENSCPOG00000038635)	ABCD4 (ENSCPOG00000004776)
Naked mole-rat female	MODERN SPECIES	18	GPATCH2L (ENSHGLG00000011249) #33	IFT43 (ENSHGLG00000006159) #32	TGFB3 (ENSHGLG00000041469) #31	ENSHGLG00000009260 #29	ERG28 (ENSHGLG00000035965) #28	FLVCR2 (ENSHGLG00000012149) #26	BATF (ENSHGLG00000009995)	ENSHGLG00000032847	ENSHGLG00000034007	JDP2 (ENSHGLG00000046590) #25	ENSHGLG00000012043	Fos (ENSHGLG00000009642)	TMED10 (ENSHGLG00000009862)	ENSHGLG00000011281 #21	ZC2HC1C (ENSHGLG00000012165)	ENSHGLG00000014222 #22	ENSHGLG00000040406	MLH3 (ENSHGLG00000015005) #23	EIF2B2 (ENSHGLG00000016520)	ENSHGLG00000050804	ENSHGLG00000018678	ENSHGLG00000013243	RPS6KL1 (ENSHGLG00000013483) #37	DLST (ENSHGLG00000009814) #36	PROX2 (ENSHGLG00000011710) #35	ENSHGLG00000046547	YLPM1 (ENSHGLG00000018654)	ENSHGLG00000017869	AREL1 (ENSHGLG00000018582)	ENSHGLG00000047171	LTBP2 (ENSHGLG00000015861)
Rodentia_B	ANCESTRAL SPECIES	7	ENSGT00390000012703.b	ENSGT00940000153433.A #34	ENSGT00410000025698.b #33	ENSGT00390000012060 #32	ENSGT00940000155747 #31	ENSGT00940000162939	ENSGT00940000162910 #29	ENSGT00390000010925 #28	ENSGT01030000234625.B.d #26	ENSGT00940000159745	ENSGT00940000155693 #25	ENSGT00940000159276	ENSGT00550000074954	ENSGT00940000156145 #21	ENSGT00940000160947	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815 #37	ENSGT00930000151014 #36	ENSGT00940000154790.b #35	ENSGT00440000039837	ENSGT00940000153117.B.d	ENSGT00940000156723	ENSGT00900000143158	ENSGT00940000160884	ENSGT00390000005700 #12	ENSGT00390000006223 #11	ENSGT00950000183147.A.a	ENSGT00390000007874
Kangaroo rat	MODERN SPECIES	321	Angel1 (ENSDORG00000007719)	Vash1 (ENSDORG00000029177)	Esrrb (ENSDORG00000000122) #34	Gpatch2l (ENSDORG00000000797) #33	Ift43 (ENSDORG00000012899) #32	Tgfb3 (ENSDORG00000012897) #31	ENSDORG00000012894	Erg28 (ENSDORG00000012893) #28	Flvcr2 (ENSDORG00000012890) #26	Batf (ENSDORG00000026541)	Jdp2 (ENSDORG00000026956) #25	Fos (ENSDORG00000024479)	Tmed10 (ENSDORG00000012999)	Nek9 (ENSDORG00000004896) #21	Zc2hc1c (ENSDORG00000004895)	Acyp1 (ENSDORG00000029459) #22	ENSDORG00000004893 #23	Pgf (ENSDORG00000029841)	Rps6kl1 (ENSDORG00000002155) #37	Dlst (ENSDORG00000002153) #36	Prox2 (ENSDORG00000027296) #35	Ylpm1 (ENSDORG00000016716)	Fcf1 (ENSDORG00000009970)	Arel1 (ENSDORG00000027985)	Ltbp2 (ENSDORG00000014858)	Isca2 (ENSDORG00000027372) #12	Syndig1l (ENSDORG00000014474)	Vrtn (ENSDORG00000010914)	Abcd4 (ENSDORG00000010912)	Vsx2 (ENSDORG00000010911)	Lin52 (ENSDORG00000025156)
Myomorpha	ANCESTRAL SPECIES	7	ENSGT00390000012703.b	ENSGT00940000153433.A #34	ENSGT00410000025698.b #33	ENSGT00390000012060 #32	ENSGT00940000155747 #31	ENSGT00940000162939	ENSGT00940000162910 #29	ENSGT00390000010925 #28	ENSGT01030000234625.B.d #26	ENSGT00940000159745	ENSGT00940000155693 #25	ENSGT00940000159276	ENSGT00550000074954	ENSGT00940000156145 #21	ENSGT00940000160947	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815 #37	ENSGT00930000151014 #36	ENSGT00940000154790.b #35	ENSGT00440000039837	ENSGT00940000153117.B.d	ENSGT00940000156723	ENSGT00900000143158	ENSGT00940000160884	ENSGT00390000005700 #12	ENSGT00390000006223 #11	ENSGT00950000183147.A.a	ENSGT00390000007874
Muroidea	ANCESTRAL SPECIES	16	ENSGT00390000012703.b	ENSGT00940000153433.A #34	ENSGT00410000025698.b #33	ENSGT00390000012060 #32	ENSGT00940000155747 #31	ENSGT00940000162939	ENSGT00940000162910 #29	ENSGT00390000010925 #28	ENSGT01030000234625.B.d #26	ENSGT00940000159745	ENSGT00940000155693 #25	ENSGT00940000159276	ENSGT00550000074954	ENSGT00940000156145 #21	ENSGT00940000160947	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815 #37	ENSGT00930000151014 #36	ENSGT00940000154790.b #35	ENSGT00440000039837	ENSGT00940000153117.B.d	ENSGT00940000156723	ENSGT00900000143158	ENSGT00940000160884	ENSGT00390000005700 #12	ENSGT00390000006223 #11	ENSGT00950000183147.A.a	ENSGT00390000007874
Muroidea_A	ANCESTRAL SPECIES	15	ENSGT00940000159057	ENSGT00390000012703.b	ENSGT00940000153433.A #34	ENSGT00410000025698.b #33	ENSGT00390000012060 #32	ENSGT00940000155747 #31	ENSGT00940000162910 #29	ENSGT00390000010925 #28	ENSGT01030000234625.B.d #26	ENSGT00940000159745	ENSGT00940000155693 #25	ENSGT00940000159276	ENSGT00550000074954	ENSGT00940000156145 #21	ENSGT00940000160947	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815 #37	ENSGT00930000151014 #36	ENSGT00940000154790.b #35	ENSGT00440000039837	ENSGT00940000153117.B.d	ENSGT00940000156723	ENSGT00900000143158	ENSGT00940000160884	ENSGT00390000005700 #12	ENSGT00390000006223 #11	ENSGT00950000183147.A.a	ENSGT00390000007874
Cricetidae	ANCESTRAL SPECIES	17	ENSGT00940000159057	ENSGT00390000012703.b	ENSGT00940000153433.A #34	ENSGT00410000025698.b #33	ENSGT00390000012060 #32	ENSGT00940000155747 #31	ENSGT00940000162910 #29	ENSGT00390000010925 #28	ENSGT01030000234625.B.d #26	ENSGT00940000159745	ENSGT00940000155693 #25	ENSGT00940000159276	ENSGT00550000074954	ENSGT00940000156145 #21	ENSGT00940000160947	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815 #37	ENSGT00930000151014 #36	ENSGT00940000154790.b #35	ENSGT00440000039837	ENSGT00940000153117.B.d.g.a	ENSGT00940000156723	ENSGT00900000143158	ENSGT00940000160884	ENSGT00390000005700 #12	ENSGT00390000006223 #11	ENSGT00950000183147.A.a	ENSGT00390000007874
Cricetidae_B	ANCESTRAL SPECIES	18	ENSGT00940000159057	ENSGT00390000012703.b	ENSGT00940000153433.A #34	ENSGT00410000025698.b #33	ENSGT00390000012060 #32	ENSGT00940000155747 #31	ENSGT00940000162910 #29	ENSGT00390000010925 #28	ENSGT01030000234625.B.d #26	ENSGT00940000159745	ENSGT00940000155693 #25	ENSGT00940000159276	ENSGT00550000074954	ENSGT00940000156145 #21	ENSGT00940000160947	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815 #37	ENSGT00930000151014 #36	ENSGT00940000154790.b #35	ENSGT00440000039837	ENSGT00940000153117.B.d.g.a	ENSGT00940000156723	ENSGT00910000147973	ENSGT00940000160884	ENSGT00390000005700 #12	ENSGT00390000006223 #11	ENSGT00950000183147.A.a	ENSGT00390000007874
Northern American deer mouse	MODERN SPECIES	5	Angel1 (ENSPEMG00000021771)	Vash1 (ENSPEMG00000031357)	Esrrb (ENSPEMG00000000679) #34	Gpatch2l (ENSPEMG00000021766) #33	Ift43 (ENSPEMG00000021440) #32	Tgfb3 (ENSPEMG00000023520) #31	Ttll5 (ENSPEMG00000011267) #29	Erg28 (ENSPEMG00000022195) #28	Flvcr2 (ENSPEMG00000021330) #26	Batf (ENSPEMG00000026240)	Jdp2 (ENSPEMG00000027096) #25	Fos (ENSPEMG00000025669)	ENSPEMG00000001102	Nek9 (ENSPEMG00000016848) #21	Zc2hc1c (ENSPEMG00000000113)	Acyp1 (ENSPEMG00000010196) #22	Mlh3 (ENSPEMG00000005719) #23	Eif2b2 (ENSPEMG00000007004)	Pgf (ENSPEMG00000017060)	Rps6kl1 (ENSPEMG00000011503) #37	Dlst (ENSPEMG00000009929) #36	Prox2 (ENSPEMG00000020502) #35	Ylpm1 (ENSPEMG00000020843)	Fcf1 (ENSPEMG00000012596)	Arel1 (ENSPEMG00000020566)	ENSPEMG00000029842	Ltbp2 (ENSPEMG00000015484)	Isca2 (ENSPEMG00000028312) #12	Npc2 (ENSPEMG00000030688) #11	Syndig1l (ENSPEMG00000030499)	Vrtn (ENSPEMG00000020660)
Prairie vole	MODERN SPECIES		Esrrb (ENSMOCG00000022915) #34	Gpatch2l (ENSMOCG00000016818) #33	Ift43 (ENSMOCG00000010189) #32	Tgfb3 (ENSMOCG00000003916) #31	ENSMOCG00000003198	ENSMOCG00000000281	ENSMOCG00000018205 #29	Erg28 (ENSMOCG00000013099) #28	Flvcr2 (ENSMOCG00000002645) #26	Batf (ENSMOCG00000014949)	Jdp2 (ENSMOCG00000002176) #25	Fos (ENSMOCG00000000968)	Tmed10 (ENSMOCG00000022712)	Nek9 (ENSMOCG00000007711) #21	Zc2hc1c (ENSMOCG00000003376)	Acyp1 (ENSMOCG00000013303) #22	ENSMOCG00000006235 #23	Eif2b2 (ENSMOCG00000003698)	Pgf (ENSMOCG00000002312)	ENSMOCG00000002159	Rps6kl1 (ENSMOCG00000020851) #37	Dlst (ENSMOCG00000022960) #36	Prox2 (ENSMOCG00000019247) #35	Ylpm1 (ENSMOCG00000022334)	ENSMOCG00000001860	Arel1 (ENSMOCG00000014662)	Ltbp2 (ENSMOCG00000007456)	Isca2 (ENSMOCG00000000566) #12	Npc2 (ENSMOCG00000013949) #11	Syndig1l (ENSMOCG00000013518)	Vrtn (ENSMOCG00000011795)
Cricetinae	ANCESTRAL SPECIES	11	ENSGT00940000159057	ENSGT00390000012703.b	ENSGT00940000153433.A #34	ENSGT00410000025698.b #33	ENSGT00390000012060 #32	ENSGT00940000155747 #31	ENSGT00940000162910 #29	ENSGT00390000010925 #28	ENSGT01030000234625.B.d #26	ENSGT00940000159745	ENSGT00940000155693 #25	ENSGT00940000159276	ENSGT00550000074954	ENSGT00940000156145 #21	ENSGT00940000160947	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815 #37	ENSGT00930000151014 #36	ENSGT00940000154790.b #35	ENSGT00440000039837	ENSGT00940000153117.B.d.g.a	ENSGT00940000156723	ENSGT00900000143158	ENSGT00940000160884	ENSGT00390000005700 #12	ENSGT00390000006223 #11	ENSGT00950000183147.A.a	ENSGT00390000007874
Chinese hamster chok1gshd	MODERN SPECIES	2	Angel1 (ENSCGRG00001002965)	Vash1 (ENSCGRG00001006114)	Esrrb (ENSCGRG00001014668) #34	Gpatch2l (ENSCGRG00001000637) #33	Ift43 (ENSCGRG00001005198) #32	Tgfb3 (ENSCGRG00001009726) #31	Ttll5 (ENSCGRG00001012708) #29	Erg28 (ENSCGRG00001009404) #28	Flvcr2 (ENSCGRG00001011591) #26	Batf (ENSCGRG00001012598)	Jdp2 (ENSCGRG00001014531) #25	Fos (ENSCGRG00001006758)	Tmed10 (ENSCGRG00001009122)	Nek9 (ENSCGRG00001020024) #21	Zc2hc1c (ENSCGRG00001022271)	Acyp1 (ENSCGRG00001021281) #22	Mlh3 (ENSCGRG00001018094) #23	Eif2b2 (ENSCGRG00001019280)	Pgf (ENSCGRG00001023393)	Rps6kl1 (ENSCGRG00001024635) #37	Dlst (ENSCGRG00001020056) #36	Prox2 (ENSCGRG00001021630) #35	Ylpm1 (ENSCGRG00001015671)	ENSCGRG00001017796	Arel1 (ENSCGRG00001023498)	ENSCGRG00001000601	ENSCGRG00001003181	Ltbp2 (ENSCGRG00001012474)	Isca2 (ENSCGRG00001010257) #12	Npc2 (ENSCGRG00001012790) #11	Syndig1l (ENSCGRG00001013830)
Golden Hamster	MODERN SPECIES	835							ENSMAUG00000011196 #29	Erg28 (ENSMAUG00000011568) #28	Flvcr2 (ENSMAUG00000016727) #26	Batf (ENSMAUG00000006835)	Jdp2 (ENSMAUG00000014923) #25	Fos (ENSMAUG00000019419)	Tmed10 (ENSMAUG00000017571)	Nek9 (ENSMAUG00000000574) #21	Zc2hc1c (ENSMAUG00000014144)	Acyp1 (ENSMAUG00000000122) #22	ENSMAUG00000000844 #23	Eif2b2 (ENSMAUG00000015945)	Pgf (ENSMAUG00000000890)	Rps6kl1 (ENSMAUG00000010833) #37	Dlst (ENSMAUG00000000864) #36	Prox2 (ENSMAUG00000008593) #35	Ylpm1 (ENSMAUG00000000879)	Fcf1 (ENSMAUG00000014155)	ENSMAUG00000003058	Ltbp2 (ENSMAUG00000015694)	ENSMAUG00000017408	Isca2 (ENSMAUG00000019928) #12	Npc2 (ENSMAUG00000020689) #11	Syndig1l (ENSMAUG00000013945)	ENSMAUG00000017258
Murinae	ANCESTRAL SPECIES	8	ENSGT00940000159057	ENSGT00390000012703.b	ENSGT00940000153433.A #34	ENSGT00410000025698.b #33	ENSGT00390000012060 #32	ENSGT00940000155747 #31	ENSGT00940000162910 #29	ENSGT00390000010925 #28	ENSGT01030000234625.B.d #26	ENSGT00940000159745	ENSGT00940000155693 #25	ENSGT00940000159276	ENSGT00550000074954	ENSGT00940000156145 #21	ENSGT00940000160947	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815 #37	ENSGT00930000151014 #36	ENSGT00940000154790.b #35	ENSGT00440000039837	ENSGT00940000153117.B.d	ENSGT00940000156723	ENSGT00900000143158	ENSGT00940000160884	ENSGT00390000005700 #12	ENSGT00390000006223 #11	ENSGT00950000183147.A.a	ENSGT00390000007874
Mus	ANCESTRAL SPECIES	10	ENSGT00940000159057	ENSGT00390000012703.b	ENSGT00940000153433.A #34	ENSGT00410000025698.b #33	ENSGT00390000012060 #32	ENSGT00940000155747 #31	ENSGT00940000162910 #29	ENSGT00390000010925 #28	ENSGT01030000234625.B.d #26	ENSGT00940000159745	ENSGT00940000155693 #25	ENSGT00940000159276	ENSGT00550000074954	ENSGT00940000156145 #21	ENSGT00940000160947	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815 #37	ENSGT00930000151014 #36	ENSGT00940000154790.b #35	ENSGT00440000039837	ENSGT00940000153117.B.d	ENSGT00940000156723	ENSGT00900000143158	ENSGT00940000160884	ENSGT00390000005700 #12	ENSGT00390000006223 #11	ENSGT00950000183147.A.a	ENSGT00390000007874
Mus_A	ANCESTRAL SPECIES	17	ENSGT00940000159057	ENSGT00390000012703.b	ENSGT00940000153433.A #34	ENSGT00410000025698.b #33	ENSGT00390000012060 #32	ENSGT00940000155747 #31	ENSGT00940000162910 #29	ENSGT00390000010925 #28	ENSGT01030000234625.B.d #26	ENSGT00940000159745	ENSGT00940000155693 #25	ENSGT00940000159276	ENSGT00550000074954	ENSGT00940000156145 #21	ENSGT00940000160947	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815 #37	ENSGT00930000151014 #36	ENSGT00940000154790.b #35	ENSGT00440000039837	ENSGT00940000153117.B.d	ENSGT00940000156723	ENSGT00900000143158	ENSGT00940000160884	ENSGT00390000005700 #12	ENSGT00390000006223 #11	ENSGT00950000183147.A.a	ENSGT00390000007874
Mus_B	ANCESTRAL SPECIES	17	ENSGT00940000159057	ENSGT00390000012703.b	ENSGT00940000153433.A #34	ENSGT00410000025698.b #33	ENSGT00390000012060 #32	ENSGT00940000155747 #31	ENSGT00940000162910 #29	ENSGT00390000010925 #28	ENSGT01030000234625.B.d #26	ENSGT00940000159745	ENSGT00940000155693 #25	ENSGT00940000159276	ENSGT00550000074954	ENSGT00940000156145 #21	ENSGT00940000160947	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815 #37	ENSGT00930000151014 #36	ENSGT00940000154790.b #35	ENSGT00440000039837	ENSGT00940000153117.B.d	ENSGT00940000156723	ENSGT00900000143158	ENSGT00940000160884	ENSGT00390000005700 #12	ENSGT00390000006223 #11	ENSGT00950000183147.A.a	ENSGT00390000007874
Mouse	MODERN SPECIES	3	Angel1 (ENSMUSG00000021257)	Vash1 (ENSMUSG00000021256)	Esrrb (ENSMUSG00000021255) #34	Gpatch2l (ENSMUSG00000021254) #33	Ift43 (ENSMUSG00000007867) #32	Tgfb3 (ENSMUSG00000021253) #31	Ttll5 (ENSMUSG00000012609) #29	Erg28 (ENSMUSG00000021252) #28	Flvcr2 (ENSMUSG00000034258) #26	Batf (ENSMUSG00000034266)	Jdp2 (ENSMUSG00000034271) #25	Fos (ENSMUSG00000021250)	Tmed10 (ENSMUSG00000021248)	Nek9 (ENSMUSG00000034290) #21	Zc2hc1c (ENSMUSG00000045064)	Acyp1 (ENSMUSG00000008822) #22	Mlh3 (ENSMUSG00000021245) #23	Eif2b2 (ENSMUSG00000004788)	Pgf (ENSMUSG00000004791)	Rps6kl1 (ENSMUSG00000019235) #37	Dlst (ENSMUSG00000004789) #36	Prox2 (ENSMUSG00000042320) #35	Ylpm1 (ENSMUSG00000021244)	Fcf1 (ENSMUSG00000021243)	Arel1 (ENSMUSG00000042350)	Ltbp2 (ENSMUSG00000002020)	Isca2 (ENSMUSG00000021241) #12	Npc2 (ENSMUSG00000021242) #11	Syndig1l (ENSMUSG00000071234)	Vrtn (ENSMUSG00000071235)	Abcd4 (ENSMUSG00000021240)
Mus_C	ANCESTRAL SPECIES	11	ENSGT00940000159057	ENSGT00390000012703.b	ENSGT00940000153433.A #34	ENSGT00410000025698.b #33	ENSGT00390000012060 #32	ENSGT00940000155747 #31	ENSGT00940000162910 #29	ENSGT00390000010925 #28	ENSGT01030000234625.B.d #26	ENSGT00940000159745	ENSGT00940000155693 #25	ENSGT00940000159276	ENSGT00550000074954	ENSGT00940000156145 #21	ENSGT00940000160947	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815 #37	ENSGT00930000151014 #36	ENSGT00940000154790.b #35	ENSGT00440000039837	ENSGT00940000153117.B.d	ENSGT00940000156723	ENSGT00900000143158	ENSGT00940000160884	ENSGT00390000005700 #12	ENSGT00390000006223 #11	ENSGT00950000183147.A.a	ENSGT00390000007874
spretus	MODERN SPECIES	3	Vash1 (MGP_SPRETEiJ_G0018823)	Esrrb (MGP_SPRETEiJ_G0018822) #34	Gpatch2l (MGP_SPRETEiJ_G0018821) #33	Ift43 (MGP_SPRETEiJ_G0018820) #32	Tgfb3 (MGP_SPRETEiJ_G0018819) #31	Ttll5 (MGP_SPRETEiJ_G0018818) #29	Erg28 (MGP_SPRETEiJ_G0018817) #28	Flvcr2 (MGP_SPRETEiJ_G0018816) #26	Batf (MGP_SPRETEiJ_G0018815)	Jdp2 (MGP_SPRETEiJ_G0018814) #25	Fos (MGP_SPRETEiJ_G0018813)	MGP_SPRETEiJ_G0018812	MGP_SPRETEiJ_G0018811	Nek9 (MGP_SPRETEiJ_G0018810) #21	Zc2hc1c (MGP_SPRETEiJ_G0018809)	Acyp1 (MGP_SPRETEiJ_G0018808) #22	Mlh3 (MGP_SPRETEiJ_G0018807) #23	Eif2b2 (MGP_SPRETEiJ_G0018806)	Pgf (MGP_SPRETEiJ_G0018805)	Rps6kl1 (MGP_SPRETEiJ_G0018804) #37	Dlst (MGP_SPRETEiJ_G0018803) #36	Prox2 (MGP_SPRETEiJ_G0018802) #35	Ylpm1 (MGP_SPRETEiJ_G0018801)	Fcf1 (MGP_SPRETEiJ_G0018800)	MGP_SPRETEiJ_G0018799	MGP_SPRETEiJ_G0018798	Ltbp2 (MGP_SPRETEiJ_G0018797)	Isca2 (MGP_SPRETEiJ_G0018796) #12	Npc2 (MGP_SPRETEiJ_G0018795) #11	Syndig1l (MGP_SPRETEiJ_G0018794)	Vrtn (MGP_SPRETEiJ_G0018793)
Steppe mouse	MODERN SPECIES	3177	Vash1 (ENSMSIG00000011860)	ENSMSIG00000011841	Esrrb (ENSMSIG00000011748) #34	Gpatch2l (ENSMSIG00000011707) #33	Ift43 (ENSMSIG00000011649) #32	Tgfb3 (ENSMSIG00000011612) #31	Ttll5 (ENSMSIG00000011107) #29	Erg28 (ENSMSIG00000011076) #28	Flvcr2 (ENSMSIG00000011041) #26	Batf (ENSMSIG00000011008)	ENSMSIG00000010944 #25	Fos (ENSMSIG00000010924)	Tmed10 (ENSMSIG00000010903)	Nek9 (ENSMSIG00000010828) #21	Zc2hc1c (ENSMSIG00000010819)	ENSMSIG00000010783 #22	Mlh3 (ENSMSIG00000010713) #23	Eif2b2 (ENSMSIG00000010687)
Ryukyu mouse	MODERN SPECIES	3	Angel1 (MGP_CAROLIEiJ_G0017978)	Vash1 (MGP_CAROLIEiJ_G0017977)	Esrrb (MGP_CAROLIEiJ_G0017976) #34	Gpatch2l (MGP_CAROLIEiJ_G0017975) #33	Ift43 (MGP_CAROLIEiJ_G0017974) #32	Tgfb3 (MGP_CAROLIEiJ_G0017973) #31	Ttll5 (MGP_CAROLIEiJ_G0017972) #29	Erg28 (MGP_CAROLIEiJ_G0017971) #28	Flvcr2 (MGP_CAROLIEiJ_G0017970) #26	Batf (MGP_CAROLIEiJ_G0017969)	Jdp2 (MGP_CAROLIEiJ_G0017968) #25	Fos (MGP_CAROLIEiJ_G0017967)	Tmed10 (MGP_CAROLIEiJ_G0017966)	Nek9 (MGP_CAROLIEiJ_G0017965) #21	Zc2hc1c (MGP_CAROLIEiJ_G0017964)	Acyp1 (MGP_CAROLIEiJ_G0017963) #22	Mlh3 (MGP_CAROLIEiJ_G0017962) #23	Eif2b2 (MGP_CAROLIEiJ_G0017961)	Pgf (MGP_CAROLIEiJ_G0017960)	Rps6kl1 (MGP_CAROLIEiJ_G0017959) #37	Dlst (MGP_CAROLIEiJ_G0017958) #36	Prox2 (MGP_CAROLIEiJ_G0017957) #35	Ylpm1 (MGP_CAROLIEiJ_G0017956)	Fcf1 (MGP_CAROLIEiJ_G0017955)	Arel1 (MGP_CAROLIEiJ_G0017954)	MGP_CAROLIEiJ_G0017953	Ltbp2 (MGP_CAROLIEiJ_G0017952)	Isca2 (MGP_CAROLIEiJ_G0017951) #12	Npc2 (MGP_CAROLIEiJ_G0017950) #11	Syndig1l (MGP_CAROLIEiJ_G0017949)	Vrtn (MGP_CAROLIEiJ_G0017948)
Shrew mouse	MODERN SPECIES	20	Angel1 (MGP_PahariEiJ_G0029737)	Vash1 (MGP_PahariEiJ_G0029736)	Esrrb (MGP_PahariEiJ_G0029735) #34	Gpatch2l (MGP_PahariEiJ_G0029734) #33	Ift43 (MGP_PahariEiJ_G0029733) #32	Tgfb3 (MGP_PahariEiJ_G0029732) #31	Ttll5 (MGP_PahariEiJ_G0029731) #29	Erg28 (MGP_PahariEiJ_G0029730) #28	Flvcr2 (MGP_PahariEiJ_G0029729) #26	Batf (MGP_PahariEiJ_G0029728)	Jdp2 (MGP_PahariEiJ_G0029727) #25	Fos (MGP_PahariEiJ_G0029726)	Tmed10 (MGP_PahariEiJ_G0029725)	Nek9 (MGP_PahariEiJ_G0029724) #21	Zc2hc1c (MGP_PahariEiJ_G0029723)	Acyp1 (MGP_PahariEiJ_G0029722) #22	Mlh3 (MGP_PahariEiJ_G0029721) #23	Eif2b2 (MGP_PahariEiJ_G0029720)	Pgf (MGP_PahariEiJ_G0029719)	Rps6kl1 (MGP_PahariEiJ_G0029718) #37	Dlst (MGP_PahariEiJ_G0029717) #36	Prox2 (MGP_PahariEiJ_G0029716) #35	Ylpm1 (MGP_PahariEiJ_G0029715)	Fcf1 (MGP_PahariEiJ_G0029714)	MGP_PahariEiJ_G0029713	MGP_PahariEiJ_G0029712	Ltbp2 (MGP_PahariEiJ_G0029711)	Isca2 (MGP_PahariEiJ_G0029710) #12	Npc2 (MGP_PahariEiJ_G0029709) #11	Syndig1l (MGP_PahariEiJ_G0029708)	Vrtn (MGP_PahariEiJ_G0029707)
Rat	MODERN SPECIES	16	Angel1 (ENSRNOG00000010567)	Vash1 (ENSRNOG00000010457)	Esrrb (ENSRNOG00000010259) #34	Gpatch2l (ENSRNOG00000010227) #33	Ift43 (ENSRNOG00000010194) #32	Tgfb3 (ENSRNOG00000009867) #31	Ttll5 (ENSRNOG00000009318) #29	Erg28 (ENSRNOG00000008781) #28	Flvcr2 (ENSRNOG00000008754) #26	Batf (ENSRNOG00000008588)	Jdp2 (ENSRNOG00000063964) #25	Fos (ENSRNOG00000008015)	Tmed10 (ENSRNOG00000007901)	Nek9 (ENSRNOG00000058572) #21	Zc2hc1c (ENSRNOG00000027115)	Acyp1 (ENSRNOG00000006744) #22	Mlh3 (ENSRNOG00000006699) #23	Eif2b2 (ENSRNOG00000006467)	Pgf (ENSRNOG00000005650)	Rps6kl1 (ENSRNOG00000005530) #37	Dlst (ENSRNOG00000005061) #36	Prox2 (ENSRNOG00000005054) #35	Lsm5 (ENSRNOG00000027305)	Ylpm1 (ENSRNOG00000027317)	Fcf1 (ENSRNOG00000004723)	Arel1 (ENSRNOG00000004382)	Ltbp2 (ENSRNOG00000012094)	Isca2 (ENSRNOG00000012085) #12	Npc2 (ENSRNOG00000012062) #11	Syndig1l (ENSRNOG00000027645)	Vrtn (ENSRNOG00000048378)
Upper Galilee mountains blind mole rat	MODERN SPECIES	1502							ENSNGAG00000000162 #29	Erg28 (ENSNGAG00000011973) #28	Flvcr2 (ENSNGAG00000016955) #26	Batf (ENSNGAG00000020639)	Jdp2 (ENSNGAG00000001677) #25	Fos (ENSNGAG00000009761)	Tmed10 (ENSNGAG00000011251)	Nek9 (ENSNGAG00000017456) #21	Zc2hc1c (ENSNGAG00000019419)	Acyp1 (ENSNGAG00000007984) #22	Mlh3 (ENSNGAG00000014700) #23	Eif2b2 (ENSNGAG00000012270)	Pgf (ENSNGAG00000000539)	Rps6kl1 (ENSNGAG00000013728) #37	Dlst (ENSNGAG00000012679) #36	Prox2 (ENSNGAG00000019326) #35	Ylpm1 (ENSNGAG00000013855)	Fcf1 (ENSNGAG00000004711)	Arel1 (ENSNGAG00000013039)	Ltbp2 (ENSNGAG00000019830)	ENSNGAG00000001197	Npc2 (ENSNGAG00000012246) #11	Syndig1l (ENSNGAG00000013742)	Abcd4 (ENSNGAG00000017662)	Vsx2 (ENSNGAG00000011608)
Lesser Egyptian jerboa	MODERN SPECIES	41	Esrrb (ENSJJAG00000007076) #34	Gpatch2l (ENSJJAG00000002357) #33	Ift43 (ENSJJAG00000023944) #32	Tgfb3 (ENSJJAG00000023218) #31	ENSJJAG00000001667	ENSJJAG00000012936 #29	Erg28 (ENSJJAG00000016443) #28	Flvcr2 (ENSJJAG00000012474) #26	Batf (ENSJJAG00000008958)	Jdp2 (ENSJJAG00000010927) #25	Fos (ENSJJAG00000007870)	ENSJJAG00000011402	ENSJJAG00000016452	Nek9 (ENSJJAG00000009859) #21	Zc2hc1c (ENSJJAG00000011295)	Acyp1 (ENSJJAG00000011511) #22	ENSJJAG00000017233 #23	Eif2b2 (ENSJJAG00000015912)	Pgf (ENSJJAG00000017768)	Rps6kl1 (ENSJJAG00000013675) #37	Dlst (ENSJJAG00000016242) #36	Prox2 (ENSJJAG00000017786) #35	Ylpm1 (ENSJJAG00000017599)	Fcf1 (ENSJJAG00000015320)	Arel1 (ENSJJAG00000023937)	ENSJJAG00000011505	Ltbp2 (ENSJJAG00000016908)	Isca2 (ENSJJAG00000015802) #12	Npc2 (ENSJJAG00000017648) #11	Syndig1l (ENSJJAG00000012505)	Vrtn (ENSJJAG00000008057)
Lagomorpha	ANCESTRAL SPECIES	25	ENSGT00390000012703.b	ENSGT00940000153433.A #34	ENSGT00410000025698.b #33	ENSGT00390000012060 #32	ENSGT00940000155747 #31	ENSGT00940000162910 #29	ENSGT00390000010925 #28	ENSGT01030000234625.B.d #26	ENSGT00940000159745	ENSGT00940000155693 #25	ENSGT00990000207089	ENSGT00940000159276	ENSGT00550000074954	ENSGT00940000156145 #21	ENSGT00940000160947	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815 #37	ENSGT00930000151014 #36	ENSGT00940000154790.b #35	ENSGT00440000039837	ENSGT00940000153117.B.d	ENSGT00940000156723	ENSGT00940000160884	ENSGT00390000005700 #12	ENSGT00390000006223 #11	ENSGT00950000183147.A.a	ENSGT00390000007874	ENSGT00950000182955.a.a.b
Rabbit	MODERN SPECIES	12	ANGEL1 (ENSOCUG00000009531)	VASH1 (ENSOCUG00000009526)	ESRRB (ENSOCUG00000001207) #34	GPATCH2L (ENSOCUG00000004135) #33	IFT43 (ENSOCUG00000011421) #32	TGFB3 (ENSOCUG00000011415) #31	TTLL5 (ENSOCUG00000011399)	FLVCR2 (ENSOCUG00000029538) #26	ERG28 (ENSOCUG00000016338) #28	BATF (ENSOCUG00000026625)	JDP2 (ENSOCUG00000008466) #25	FOS (ENSOCUG00000021506)	TMED10 (ENSOCUG00000004669)	NEK9 (ENSOCUG00000010201) #21	ZC2HC1C (ENSOCUG00000010195)	ENSOCUG00000010190 #22	MLH3 (ENSOCUG00000010182) #23	EIF2B2 (ENSOCUG00000010175)	PGF (ENSOCUG00000026354)	RPS6KL1 (ENSOCUG00000013819) #37	DLST (ENSOCUG00000015606) #36	PROX2 (ENSOCUG00000021246) #35	YLPM1 (ENSOCUG00000008083)	ENSOCUG00000014120	AREL1 (ENSOCUG00000014107)	LTBP2 (ENSOCUG00000014077)	ISCA2 (ENSOCUG00000014072) #12	NPC2 (ENSOCUG00000014067) #11	ENSOCUG00000035144	SYNDIG1L (ENSOCUG00000015989)	VRTN (ENSOCUG00000027081)
Pika	MODERN SPECIES	593					TGFB3 (ENSOPRG00000012104) #31	ENSOPRG00000012071 #29	ERG28 (ENSOPRG00000012066) #28	FLVCR2 (ENSOPRG00000012046) #26	BATF (ENSOPRG00000012041)	JDP2 (ENSOPRG00000012032) #25	ENSOPRG00000012017	FOS (ENSOPRG00000012005)	TMED10 (ENSOPRG00000011992)	NEK9 (ENSOPRG00000011956) #21	ENSOPRG00000011943	ENSOPRG00000011940 #22	MLH3 (ENSOPRG00000011908) #23	EIF2B2 (ENSOPRG00000011892)	PGF (ENSOPRG00000011869)	RPS6KL1 (ENSOPRG00000011848) #37	DLST (ENSOPRG00000011832) #36	PROX2 (ENSOPRG00000011820) #35	YLPM1 (ENSOPRG00000011778)	FCF1 (ENSOPRG00000011766)	ENSOPRG00000018844	AREL1 (ENSOPRG00000011748)	LTBP2 (ENSOPRG00000011689)	ISCA2 (ENSOPRG00000011684) #12	NPC2 (ENSOPRG00000011675) #11
Primates	ANCESTRAL SPECIES	2	ENSGT00390000012703.b	ENSGT00940000153433.A #34	ENSGT00410000025698.b #33	ENSGT00390000012060 #32	ENSGT00940000155747 #31	ENSGT00940000162939	ENSGT00940000162910 #29	ENSGT00390000010925 #28	ENSGT01030000234625.B.d #26	ENSGT00940000159745	ENSGT00940000155693 #25	ENSGT00940000159276	ENSGT00550000074954	ENSGT00940000156145 #21	ENSGT00940000160947	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815 #37	ENSGT00930000151014 #36	ENSGT00940000154790.b #35	ENSGT00440000039837	ENSGT00940000153117.B.d.b	ENSGT00940000156723	ENSGT00900000143158	ENSGT00940000160884	ENSGT00390000005700 #12	ENSGT00390000006223 #11	ENSGT00950000183147.A.a	ENSGT00390000007874
Strepsirrhini	ANCESTRAL SPECIES	2	ENSGT00940000159057	ENSGT00390000012703.b	ENSGT00940000153433.A #34	ENSGT00410000025698.b #33	ENSGT00390000012060 #32	ENSGT00940000155747 #31	ENSGT00940000162939	ENSGT00390000010925 #28	ENSGT01030000234625.B.d #26	ENSGT00940000159745	ENSGT00940000155693 #25	ENSGT00940000159276	ENSGT00550000074954	ENSGT00940000156145 #21	ENSGT00940000160947	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815 #37	ENSGT00930000151014 #36	ENSGT00940000154790.b #35	ENSGT00440000039837	ENSGT00940000153117.B.c.b	ENSGT00940000156723	ENSGT00900000143158	ENSGT00940000160884	ENSGT00390000005700 #12	ENSGT00390000006223 #11	ENSGT00950000183147.A.a	ENSGT00390000007874
Lemuriformes	ANCESTRAL SPECIES	28	ENSGT00390000012703.b	ENSGT00940000153433.A #34	ENSGT00410000025698.b #33	ENSGT00390000012060 #32	ENSGT00940000155747 #31	ENSGT00940000162939	ENSGT00940000162910 #29	ENSGT00390000010925 #28	ENSGT01030000234625.B.d #26	ENSGT00940000159745	ENSGT00940000155693 #25	ENSGT00940000159276	ENSGT00550000074954	ENSGT00940000156145 #21	ENSGT00940000160947	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815 #37	ENSGT00930000151014.n #36	ENSGT00940000154790.b #35	ENSGT00440000039837	ENSGT00940000153117.B.c.b	ENSGT00940000156723	ENSGT00900000143158	ENSGT00940000160884	ENSGT00390000005700 #12	ENSGT00390000006223 #11	ENSGT00950000183147.A.a	ENSGT00390000007874
Lemuriformes_a	ANCESTRAL SPECIES	11	ENSGT00390000012703.b	ENSGT00940000153433.A #34	ENSGT00410000025698.b #33	ENSGT00390000012060 #32	ENSGT00940000155747 #31	ENSGT00940000162939	ENSGT00940000162910 #29	ENSGT00390000010925 #28	ENSGT01030000234625.B.d #26	ENSGT00940000159745	ENSGT00940000155693 #25	ENSGT00940000159276	ENSGT00550000074954	ENSGT00940000156145 #21	ENSGT00940000160947	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815 #37	ENSGT00930000151014.n #36	ENSGT00940000154790.b #35	ENSGT00440000039837	ENSGT00940000153117.B.c.b	ENSGT00940000156723	ENSGT00900000143158	ENSGT00940000160884	ENSGT00390000005700 #12	ENSGT00390000006223 #11	ENSGT00950000183147.A.a	ENSGT00390000007874
Greater bamboo lemur	MODERN SPECIES	848	RSPO1 (ENSPSMG00000014378)	GNL2 (ENSPSMG00000014401)	DNALI1 (ENSPSMG00000014433)	SNIP1 (ENSPSMG00000014438)	MEAF6 (ENSPSMG00000014500)	ZC3H12A (ENSPSMG00000014523)	ENSPSMG00000014531 #29	FLVCR2 (ENSPSMG00000014586) #26	ERG28 (ENSPSMG00000014608) #28	BATF (ENSPSMG00000014617)	JDP2 (ENSPSMG00000014639) #25	FOS (ENSPSMG00000014692)	TMED10 (ENSPSMG00000014729)	NEK9 (ENSPSMG00000014787) #21	ZC2HC1C (ENSPSMG00000014834)	ENSPSMG00000014839 #22	MLH3 (ENSPSMG00000014947) #23	EIF2B2 (ENSPSMG00000015056)	PGF (ENSPSMG00000015095)	RPS6KL1 (ENSPSMG00000015121) #37	DLST (ENSPSMG00000015212) #36	PROX2 (ENSPSMG00000015245) #35	YLPM1 (ENSPSMG00000015336)	ENSPSMG00000015360	TRMT10C (ENSPSMG00000015367)	ENSPSMG00000015378	ENSPSMG00000015384	ENSPSMG00000015393
Mouse lemur	MODERN SPECIES	22	ENSMICG00000017849	VASH1 (ENSMICG00000003625)	ESRRB (ENSMICG00000003618) #34	GPATCH2L (ENSMICG00000006355) #33	ENSMICG00000006352	TGFB3 (ENSMICG00000016110) #31	TTLL5 (ENSMICG00000016085)	ERG28 (ENSMICG00000016077) #28	FLVCR2 (ENSMICG00000016055) #26	BATF (ENSMICG00000029066)	JDP2 (ENSMICG00000029702) #25	FOS (ENSMICG00000016026)	TMED10 (ENSMICG00000016016)	NEK9 (ENSMICG00000015999) #21	ZC2HC1C (ENSMICG00000015986)	ENSMICG00000026687 #22	MLH3 (ENSMICG00000037718) #23	EIF2B2 (ENSMICG00000006100)	PGF (ENSMICG00000006094)	RPS6KL1 (ENSMICG00000006086) #37	DLST (ENSMICG00000006080) #36	ENSMICG00000006078 #35	YLPM1 (ENSMICG00000006067)	ENSMICG00000006061	AREL1 (ENSMICG00000006054)	LTBP2 (ENSMICG00000006026)	ISCA2 (ENSMICG00000043470) #12	NPC2 (ENSMICG00000006008) #11	SYNDIG1L (ENSMICG00000027038)	ABCD4 (ENSMICG00000008482)	VSX2 (ENSMICG00000037778)
Bushbaby	MODERN SPECIES	135	VASH1 (ENSOGAG00000000669)	ESRRB (ENSOGAG00000008646) #34	ENSOGAG00000032435	GPATCH2L (ENSOGAG00000009392) #33	ENSOGAG00000034452	TGFB3 (ENSOGAG00000009386) #31	TTLL5 (ENSOGAG00000009371)	ERG28 (ENSOGAG00000009368) #28	FLVCR2 (ENSOGAG00000010134) #26	BATF (ENSOGAG00000010133)	JDP2 (ENSOGAG00000024796) #25	FOS (ENSOGAG00000032356)	TMED10 (ENSOGAG00000028272)	NEK9 (ENSOGAG00000008245) #21	ZC2HC1C (ENSOGAG00000032675)	ENSOGAG00000029028 #22	MLH3 (ENSOGAG00000008240) #23	EIF2B2 (ENSOGAG00000008234)	PGF (ENSOGAG00000008229)	RPS6KL1 (ENSOGAG00000001332) #37	DLST (ENSOGAG00000027931) #36	PROX2 (ENSOGAG00000001327) #35	YLPM1 (ENSOGAG00000001323)	ENSOGAG00000002711	AREL1 (ENSOGAG00000002706)	LTBP2 (ENSOGAG00000002703)	ISCA2 (ENSOGAG00000002698) #12	NPC2 (ENSOGAG00000002697) #11	SYNDIG1L (ENSOGAG00000030617)	VRTN (ENSOGAG00000024981)	ABCD4 (ENSOGAG00000013557)
Haplorrhini	ANCESTRAL SPECIES	12	ENSGT00390000012703.b	ENSGT00940000153433.A #34	ENSGT00410000025698.b #33	ENSGT00390000012060 #32	ENSGT00940000155747 #31	ENSGT00940000162939	ENSGT00940000162910 #29	ENSGT00390000010925 #28	ENSGT01030000234625.B.d #26	ENSGT00940000159745	ENSGT00940000155693 #25	ENSGT00940000159276	ENSGT00550000074954	ENSGT00940000156145 #21	ENSGT00940000160947	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815 #37	ENSGT00930000151014 #36	ENSGT00940000154790.b #35	ENSGT00440000039837	ENSGT00940000153117.B.d.b	ENSGT00940000156723	ENSGT00910000147973	ENSGT00940000160884	ENSGT00390000005700 #12	ENSGT00390000006223 #11	ENSGT00950000183147.A.a	ENSGT00390000007874
Simiiformes	ANCESTRAL SPECIES	2	ENSGT00910000147449	ENSGT00390000012703.b	ENSGT00940000153433.A #34	ENSGT00410000025698.b #33	ENSGT00390000012060 #32	ENSGT00940000155747 #31	ENSGT00940000162939	ENSGT00390000010925 #28	ENSGT01030000234625.B.d #26	ENSGT00940000159745	ENSGT00940000155693 #25	ENSGT00940000159276	ENSGT00550000074954.bb	ENSGT00940000156145 #21	ENSGT00940000160947	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815 #37	ENSGT00930000151014 #36	ENSGT00830000128380.q.a	ENSGT00390000000227.g.a	ENSGT00940000154790.b #35	ENSGT00440000039837	ENSGT00940000153117.B.d.b	ENSGT00940000156723	ENSGT00910000147973	ENSGT00940000160884	ENSGT00390000005700.a.b #12	ENSGT00390000006223 #11
Catarrhini	DUPLICATION
Catarrhini	ANCESTRAL SPECIES	9	ENSGT00910000147449	ENSGT00390000012703.b	ENSGT00940000153433.A #34	ENSGT00410000025698.b #33	ENSGT00390000012060 #32	ENSGT00940000155747 #31	ENSGT00940000162939	ENSGT00390000010925 #28	ENSGT01030000234625.B.d #26	ENSGT00940000159745	ENSGT00940000155693 #25	ENSGT00940000159276	ENSGT00550000074954.bb	ENSGT00940000156145 #21	ENSGT00940000160947	ENSGT00390000011103.B.i #22	ENSGT00800000124176 #23	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815 #37	ENSGT00930000151014 #36	ENSGT00390000000227.g.a	ENSGT00940000154790.b #35	ENSGT00440000039837	ENSGT00940000153117.B.d.b	ENSGT00940000156723	ENSGT00940000160884	ENSGT00390000005700.a.b #12	ENSGT00390000006223 #11	ENSGT00940000160251.h	ENSGT00950000183147.A.a
Cercopithecidae	ANCESTRAL SPECIES	7	ENSGT00410000025698.b #33	ENSGT00390000012060 #32	ENSGT00940000155747 #31	ENSGT00950000182980.a.b.b.b.q.b	ENSGT00940000162939	ENSGT00390000010925 #28	ENSGT01030000234625.B.d #26	ENSGT00940000159745	ENSGT00940000153883.a.a	ENSGT00940000159991.A	ENSGT00940000155693 #25	ENSGT00940000159276	ENSGT00550000074954.bb	ENSGT00940000156145 #21	ENSGT00940000160947	ENSGT00390000011103.B.i #22	ENSGT00800000124176 #23	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815 #37	ENSGT00930000151014 #36	ENSGT00390000000227.g.a	ENSGT00940000154790.b #35	ENSGT00440000039837	ENSGT00940000153117.B.d.b	ENSGT00940000156723	ENSGT00940000160884	ENSGT00390000005700.a.b #12	ENSGT00390000006223 #11	ENSGT00950000183147.A.a	ENSGT00390000007874
Cercopithecinae	ANCESTRAL SPECIES	2	ENSGT00410000025698.b #33	ENSGT00390000012060 #32	ENSGT00940000155747 #31	ENSGT00950000182980.a.b.b.b.q.b	ENSGT00940000162939	ENSGT00390000010925 #28	ENSGT01030000234625.B.d #26	ENSGT00940000159745	ENSGT00940000153883.a.a	ENSGT00940000159991.A	ENSGT00940000155693 #25	ENSGT00940000159276	ENSGT00550000074954.bb	ENSGT00940000156145 #21	ENSGT00940000160947	ENSGT00390000011103.B.i #22	ENSGT00800000124176 #23	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815 #37	ENSGT00930000151014 #36	ENSGT00390000000227.g.a.d	ENSGT00940000154790.b #35	ENSGT00440000039837	ENSGT00940000153117.B.d.b	ENSGT00940000156723	ENSGT00940000160884	ENSGT00390000005700.a.b #12	ENSGT00390000006223 #11	ENSGT00950000183147.A.a	ENSGT00390000007874
Vervet Monkey	MODERN SPECIES	16	ANGEL1 (ENSCSAG00000011939)	VASH1 (ENSCSAG00000011944)	ESRRB (ENSCSAG00000011968) #34	GPATCH2L (ENSCSAG00000011988) #33	IFT43 (ENSCSAG00000011996) #32	TGFB3 (ENSCSAG00000012003) #31	TTLL5 (ENSCSAG00000012037)	ERG28 (ENSCSAG00000012045) #28	FLVCR2 (ENSCSAG00000012084) #26	BATF (ENSCSAG00000012114)	JDP2 (ENSCSAG00000012122) #25	FOS (ENSCSAG00000012136)	TMED10 (ENSCSAG00000012147)	NEK9 (ENSCSAG00000012158) #21	ZC2HC1C (ENSCSAG00000012169)	ENSCSAG00000012173 #22	MLH3 (ENSCSAG00000012181) #23	EIF2B2 (ENSCSAG00000012187)	PGF (ENSCSAG00000012223)	RPS6KL1 (ENSCSAG00000012263) #37	DLST (ENSCSAG00000012278) #36	PROX2 (ENSCSAG00000012283) #35	YLPM1 (ENSCSAG00000012291)	AREL1 (ENSCSAG00000012298)	LTBP2 (ENSCSAG00000012456)	ISCA2 (ENSCSAG00000012521) #12	NPC2 (ENSCSAG00000012527) #11	SYNDIG1L (ENSCSAG00000012533)	VRTN (ENSCSAG00000019573)	ABCD4 (ENSCSAG00000012543)	VSX2 (ENSCSAG00000012566)
Cercopithecinae_a	ANCESTRAL SPECIES	1	ENSGT00940000153433.A #34	ENSGT00410000025698.b #33	ENSGT00390000012060 #32	ENSGT00940000155747 #31	ENSGT00950000182980.a.b.b.b.q.b	ENSGT00940000162939	ENSGT00390000010925 #28	ENSGT01030000234625.B.d #26	ENSGT00940000159745	ENSGT00940000153883.a.a	ENSGT00940000155693 #25	ENSGT00940000159276	ENSGT00550000074954.bb	ENSGT00940000156145 #21	ENSGT00940000160947	ENSGT00390000011103.B.i #22	ENSGT00800000124176 #23	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815 #37	ENSGT00930000151014 #36	ENSGT00390000000227.g.a.d	ENSGT00940000154790.b #35	ENSGT00440000039837	ENSGT00940000153117.B.d.b	ENSGT00940000156723	ENSGT00940000160884	ENSGT00390000005700.a.b #12	ENSGT00390000006223 #11	ENSGT00950000183147.A.a	ENSGT00390000007874
Macaca	ANCESTRAL SPECIES	1	ENSGT00940000153433.A #34	ENSGT00410000025698.b #33	ENSGT00390000012060 #32	ENSGT00940000155747 #31	ENSGT00950000182980.a.b.b.b.q.b.a	ENSGT00940000162939	ENSGT00390000010925 #28	ENSGT01030000234625.B.d #26	ENSGT00940000159745	ENSGT00940000153883.a.a	ENSGT00940000155693 #25	ENSGT00940000159276	ENSGT00550000074954.bb	ENSGT00940000156145 #21	ENSGT00940000160947	ENSGT00390000011103.B.i #22	ENSGT00800000124176 #23	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815 #37	ENSGT00930000151014 #36	ENSGT00390000000227.g.a.d	ENSGT00940000154790.b #35	ENSGT00440000039837	ENSGT00940000153117.B.d.b	ENSGT00940000156723	ENSGT00940000160884	ENSGT00390000005700.a.b #12	ENSGT00390000006223 #11	ENSGT00950000183147.A.a	ENSGT00390000007874
Macaca_a	ANCESTRAL SPECIES	2	ENSGT00410000025698.b #33	ENSGT00390000012060 #32	ENSGT00940000155747 #31	ENSGT00950000182980.a.b.b.b.q.b.a	ENSGT00940000162939	ENSGT00390000010925 #28	ENSGT01030000234625.B.d #26	ENSGT00940000159745	ENSGT00940000155693 #25	ENSGT01100000263493.a.b.a.a.a.b.a.a.b.b.a.b.a.b.a.a.a	ENSGT00940000159276	ENSGT00940000167556.b.b.a.b.a.a.a.b.a.b.a.a.a.a	ENSGT00550000074954.bb	ENSGT00940000156145 #21	ENSGT00940000160947	ENSGT00390000011103.B.i #22	ENSGT00800000124176 #23	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815 #37	ENSGT00930000151014 #36	ENSGT00940000154790.b #35	ENSGT00440000039837	ENSGT01100000263539.b.a.a.a.b.b.a.b.a.a.a.b.a.a.b.a.a	ENSGT00940000153117.B.c.b	ENSGT00940000156723	ENSGT00940000160884	ENSGT00390000005700.a.b #12	ENSGT00390000006223 #11	ENSGT00950000183147.A.a	ENSGT00390000007874
Crab-eating macaque	MODERN SPECIES	17	TGFB3 (ENSMFAG00000024879) #31	ENSMFAG00000056633	ENSMFAG00000039878	TTLL5 (ENSMFAG00000029801)	ERG28 (ENSMFAG00000000605) #28	ENSMFAG00000053687	FLVCR2 (ENSMFAG00000039606) #26	BATF (ENSMFAG00000031172)	JDP2 (ENSMFAG00000033637) #25	ENSMFAG00000061921	FOS (ENSMFAG00000014606)	ENSMFAG00000050715	TMED10 (ENSMFAG00000031081)	NEK9 (ENSMFAG00000037572) #21	ZC2HC1C (ENSMFAG00000013902)	ENSMFAG00000030959 #22	MLH3 (ENSMFAG00000043843) #23	EIF2B2 (ENSMFAG00000043749)	PGF (ENSMFAG00000044494)	RPS6KL1 (ENSMFAG00000037597) #37	DLST (ENSMFAG00000030177) #36	PROX2 (ENSMFAG00000032039) #35	YLPM1 (ENSMFAG00000034471)	ENSMFAG00000050358	FCF1 (ENSMFAG00000043357)	AREL1 (ENSMFAG00000034133)	LTBP2 (ENSMFAG00000039527)	ISCA2 (ENSMFAG00000049400) #12	NPC2 (ENSMFAG00000035734) #11	SYNDIG1L (ENSMFAG00000039919)	VRTN (ENSMFAG00000011666)
Pig-tailed macaque	MODERN SPECIES	225			IFT43 (ENSMNEG00000043689) #32	TGFB3 (ENSMNEG00000043550) #31	TTLL5 (ENSMNEG00000037856)	ENSMNEG00000032194	FLVCR2 (ENSMNEG00000041899) #26	ERG28 (ENSMNEG00000004663) #28	BATF (ENSMNEG00000028812)	ENSMNEG00000033927	JDP2 (ENSMNEG00000044862) #25	FOS (ENSMNEG00000031655)	TMED10 (ENSMNEG00000027961)	NEK9 (ENSMNEG00000038107) #21	ZC2HC1C (ENSMNEG00000044895)	ENSMNEG00000041248 #22	MLH3 (ENSMNEG00000032615) #23	EIF2B2 (ENSMNEG00000034034)	PGF (ENSMNEG00000030055)	RPS6KL1 (ENSMNEG00000043637) #37	DLST (ENSMNEG00000035472) #36	ENSMNEG00000037226	PROX2 (ENSMNEG00000034494) #35	YLPM1 (ENSMNEG00000036638)	ENSMNEG00000033468	AREL1 (ENSMNEG00000031507)	LTBP2 (ENSMNEG00000036133)	ISCA2 (ENSMNEG00000036042) #12	NPC2 (ENSMNEG00000040141) #11	SYNDIG1L (ENSMNEG00000028619)	VRTN (ENSMNEG00000001103)
Cercopithecinae_b	ANCESTRAL SPECIES	8	ENSGT00940000153433.A #34	ENSGT00410000025698.b #33	ENSGT00390000012060 #32	ENSGT00940000155747 #31	ENSGT00950000182980.a.b.b.b.q.b	ENSGT00940000162939	ENSGT00390000010925 #28	ENSGT01030000234625.B.d #26	ENSGT00940000159745	ENSGT00940000153883.a.a	ENSGT00940000155693 #25	ENSGT00940000159276	ENSGT00550000074954.bb	ENSGT00940000156145 #21	ENSGT00940000160947	ENSGT00390000011103.B.i #22	ENSGT00800000124176 #23	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815 #37	ENSGT00930000151014 #36	ENSGT00390000000227.g.a.d	ENSGT00940000154790.b #35	ENSGT00440000039837	ENSGT00940000153117.B.d.b	ENSGT00940000156723	ENSGT00940000160884	ENSGT00390000005700.a.b #12	ENSGT00390000006223 #11	ENSGT00950000183147.A.a	ENSGT00390000007874
Cercopithecinae_d	ANCESTRAL SPECIES	11	ENSGT00940000153433.A #34	ENSGT00410000025698.b #33	ENSGT00390000012060 #32	ENSGT00940000155747 #31	ENSGT00950000182980.a.b.b.b.q.b	ENSGT00940000162939	ENSGT00390000010925 #28	ENSGT01030000234625.B.d #26	ENSGT00940000159745	ENSGT00940000153883.a.a	ENSGT00940000155693 #25	ENSGT00940000159276	ENSGT00550000074954.bb	ENSGT00940000156145 #21	ENSGT00940000160947	ENSGT00390000011103.B.i #22	ENSGT00800000124176 #23	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815 #37	ENSGT00930000151014 #36	ENSGT00390000000227.g.a.d	ENSGT00940000154790.b #35	ENSGT00440000039837	ENSGT00940000153117.B.d.b	ENSGT00940000156723	ENSGT00940000160884	ENSGT00390000005700.a.b #12	ENSGT00390000006223 #11	ENSGT00950000183147.A.a	ENSGT00390000007874
Sooty mangabey	MODERN SPECIES	165	ESRRB (ENSCATG00000030999) #34	GPATCH2L (ENSCATG00000044894) #33	IFT43 (ENSCATG00000043000) #32	TGFB3 (ENSCATG00000024787) #31	ENSCATG00000039187	TTLL5 (ENSCATG00000039057)	ERG28 (ENSCATG00000027251) #28	FLVCR2 (ENSCATG00000001690) #26	BATF (ENSCATG00000032310)	ENSCATG00000031624	JDP2 (ENSCATG00000041724) #25	FOS (ENSCATG00000044925)	TMED10 (ENSCATG00000031220)	NEK9 (ENSCATG00000037694) #21	ZC2HC1C (ENSCATG00000039242)	ENSCATG00000044270 #22	MLH3 (ENSCATG00000037886) #23	EIF2B2 (ENSCATG00000044945)	PGF (ENSCATG00000021773)	RPS6KL1 (ENSCATG00000030155) #37	DLST (ENSCATG00000021002) #36	PROX2 (ENSCATG00000005114) #35	YLPM1 (ENSCATG00000029765)	ENSCATG00000038174	AREL1 (ENSCATG00000024599)	LTBP2 (ENSCATG00000037020)	ISCA2 (ENSCATG00000039296) #12	NPC2 (ENSCATG00000034248) #11	SYNDIG1L (ENSCATG00000034933)	VRTN (ENSCATG00000016010)	ABCD4 (ENSCATG00000044007)
Drill	MODERN SPECIES	827		GPATCH2L (ENSMLEG00000010264) #33	IFT43 (ENSMLEG00000042350) #32	TGFB3 (ENSMLEG00000040102) #31	ENSMLEG00000016058	TTLL5 (ENSMLEG00000033082)	ERG28 (ENSMLEG00000034213) #28	FLVCR2 (ENSMLEG00000042003) #26	BATF (ENSMLEG00000033193)	ENSMLEG00000041625	JDP2 (ENSMLEG00000038051) #25	FOS (ENSMLEG00000040559)	TMED10 (ENSMLEG00000038447)	NEK9 (ENSMLEG00000038474) #21	ZC2HC1C (ENSMLEG00000040598)	ENSMLEG00000033619 #22	MLH3 (ENSMLEG00000009239) #23	EIF2B2 (ENSMLEG00000041601)	PGF (ENSMLEG00000028938)	RPS6KL1 (ENSMLEG00000037049) #37	DLST (ENSMLEG00000037511) #36	ENSMLEG00000031552	PROX2 (ENSMLEG00000044172) #35	YLPM1 (ENSMLEG00000041226)	ENSMLEG00000043413	AREL1 (ENSMLEG00000017085)	LTBP2 (ENSMLEG00000036452)	ISCA2 (ENSMLEG00000031882) #12	NPC2 (ENSMLEG00000043459) #11	SYNDIG1L (ENSMLEG00000034438)	VRTN (ENSMLEG00000011469)
Olive baboon	MODERN SPECIES	17	ESRRB (ENSPANG00000019985) #34	GPATCH2L (ENSPANG00000017554) #33	ENSPANG00000038588	IFT43 (ENSPANG00000024302) #32	TGFB3 (ENSPANG00000020776) #31	TTLL5 (ENSPANG00000021771)	ENSPANG00000030981	FLVCR2 (ENSPANG00000017555) #26	ERG28 (ENSPANG00000022559) #28	BATF (ENSPANG00000021772)	JDP2 (ENSPANG00000019986) #25	FOS (ENSPANG00000020551)	TMED10 (ENSPANG00000019635)	NEK9 (ENSPANG00000006981) #21	ZC2HC1C (ENSPANG00000045711)	ENSPANG00000006824 #22	MLH3 (ENSPANG00000016738) #23	EIF2B2 (ENSPANG00000006825)	PGF (ENSPANG00000017556)	RPS6KL1 (ENSPANG00000016739) #37	DLST (ENSPANG00000024086) #36	PROX2 (ENSPANG00000024084) #35	YLPM1 (ENSPANG00000006982)	FCF1 (ENSPANG00000013437)	AREL1 (ENSPANG00000018774)	LTBP2 (ENSPANG00000012340)	ISCA2 (ENSPANG00000006983) #12	NPC2 (ENSPANG00000013438) #11	SYNDIG1L (ENSPANG00000001022)	VRTN (ENSPANG00000012341)	ABCD4 (ENSPANG00000007033)
Rhinopithecus	ANCESTRAL SPECIES	42	ENSGT00940000153433.A #34	ENSGT00410000025698.b #33	ENSGT00390000012060 #32	ENSGT00940000155747 #31	ENSGT00950000182980.a.b.b.b.q.b	ENSGT00940000162939	ENSGT00390000010925 #28	ENSGT01030000234625.B.d #26	ENSGT00940000159745	ENSGT00940000153883.a.a	ENSGT00940000155693 #25	ENSGT00940000159276	ENSGT00550000074954.bb	ENSGT00940000156145 #21	ENSGT00940000160947	ENSGT00390000011103.B.i #22	ENSGT00800000124176 #23	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815 #37	ENSGT00930000151014 #36	ENSGT00940000154790.b #35	ENSGT00440000039837	ENSGT00940000153117.B.d.b	ENSGT00940000156723	ENSGT00940000160884	ENSGT00390000005700.a.b #12	ENSGT00390000006223 #11	ENSGT00950000183147.A.a	ENSGT00390000007874	ENSGT00950000182955.a.a.b
Black snub-nosed monkey	MODERN SPECIES	656	ESRRB (ENSRBIG00000027867) #34	GPATCH2L (ENSRBIG00000031287) #33	IFT43 (ENSRBIG00000043094) #32	TGFB3 (ENSRBIG00000037115) #31	ENSRBIG00000033309	TTLL5 (ENSRBIG00000044481)	ERG28 (ENSRBIG00000029268) #28	FLVCR2 (ENSRBIG00000038928) #26	BATF (ENSRBIG00000038010)	ENSRBIG00000036437	JDP2 (ENSRBIG00000030082) #25	FOS (ENSRBIG00000036327)	TMED10 (ENSRBIG00000042626)	NEK9 (ENSRBIG00000032887) #21	ZC2HC1C (ENSRBIG00000029182)	ENSRBIG00000028316 #22	MLH3 (ENSRBIG00000031546) #23	EIF2B2 (ENSRBIG00000040243)	PGF (ENSRBIG00000031738)	RPS6KL1 (ENSRBIG00000040806) #37	DLST (ENSRBIG00000044815) #36	PROX2 (ENSRBIG00000034329) #35	YLPM1 (ENSRBIG00000042494)	ENSRBIG00000035012	AREL1 (ENSRBIG00000042880)	LTBP2 (ENSRBIG00000029959)	ISCA2 (ENSRBIG00000038871) #12	NPC2 (ENSRBIG00000030802) #11	SYNDIG1L (ENSRBIG00000032309)	VRTN (ENSRBIG00000024397)	ABCD4 (ENSRBIG00000031434)
Golden snub-nosed monkey	MODERN SPECIES	2365	ESRRB (ENSRROG00000034057) #34	GPATCH2L (ENSRROG00000031820) #33	IFT43 (ENSRROG00000036349) #32	TGFB3 (ENSRROG00000005123) #31	ENSRROG00000037942	TTLL5 (ENSRROG00000038675)	ERG28 (ENSRROG00000043806) #28	FLVCR2 (ENSRROG00000042695) #26	BATF (ENSRROG00000041232)	ENSRROG00000034062	JDP2 (ENSRROG00000000567) #25	FOS (ENSRROG00000038425)	TMED10 (ENSRROG00000034110)	NEK9 (ENSRROG00000011665) #21	ZC2HC1C (ENSRROG00000045324)	ENSRROG00000037333 #22	MLH3 (ENSRROG00000029699) #23	EIF2B2 (ENSRROG00000042761)	PGF (ENSRROG00000034324)	RPS6KL1 (ENSRROG00000033229) #37	DLST (ENSRROG00000045190) #36	PROX2 (ENSRROG00000033966) #35	YLPM1 (ENSRROG00000039845)	ENSRROG00000037201	AREL1 (ENSRROG00000031099)	ENSRROG00000045039	LTBP2 (ENSRROG00000036111)	ISCA2 (ENSRROG00000030258) #12	NPC2 (ENSRROG00000037959) #11	SYNDIG1L (ENSRROG00000041128)	VRTN (ENSRROG00000010435)
Catarrhini	ANCESTRAL SPECIES																	ENSGT00390000011103.B.j #22
Hominoidea	ANCESTRAL SPECIES	12	ENSGT00910000147449	ENSGT00390000012703.b	ENSGT00940000153433.A #34	ENSGT00410000025698.b #33	ENSGT00390000012060 #32	ENSGT00940000155747 #31	ENSGT00940000162939	ENSGT00390000010925 #28	ENSGT01030000234625.B.d #26	ENSGT00940000159745	ENSGT00940000155693 #25	ENSGT00940000159276	ENSGT00550000074954.bb	ENSGT00940000156145 #21	ENSGT00940000160947	ENSGT00390000011103.B.j #22	ENSGT00800000124176 #23	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815 #37	ENSGT00930000151014.h.a #36	ENSGT00940000154790.b #35	ENSGT00440000039837	ENSGT00940000153117.B.d.b	ENSGT00940000156723	ENSGT00940000160884	ENSGT00910000148032	ENSGT00390000005700.a.b #12	ENSGT00390000006223 #11	ENSGT00940000160251.h	ENSGT00950000183147.A.a
Hominidae	ANCESTRAL SPECIES	14	ENSGT00910000147449	ENSGT00390000012703.b	ENSGT00940000153433.A #34	ENSGT00410000025698.b #33	ENSGT00390000012060 #32	ENSGT00940000155747 #31	ENSGT00940000162939	ENSGT00390000010925 #28	ENSGT01030000234625.B.d #26	ENSGT00940000159745	ENSGT00940000155693 #25	ENSGT00940000159276	ENSGT00550000074954.bb	ENSGT00940000156145 #21	ENSGT00940000160947	ENSGT00390000011103.B.j #22	ENSGT00800000124176 #23	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815 #37	ENSGT00930000151014.h.a #36	ENSGT00940000154790.b #35	ENSGT00440000039837	ENSGT00940000153117.B.d.b	ENSGT00940000156723	ENSGT00940000160884	ENSGT00910000148032	ENSGT00390000005700.a.b #12	ENSGT00390000006223 #11	ENSGT00950000183147.A.a	ENSGT00390000007874
Orangutan	MODERN SPECIES	5	ENSPPYG00000036070	VASH1 (ENSPPYG00000006013)	ESRRB (ENSPPYG00000006012) #34	GPATCH2L (ENSPPYG00000006011) #33	IFT43 (ENSPPYG00000006010) #32	TGFB3 (ENSPPYG00000006009) #31	TTLL5 (ENSPPYG00000006008)	ERG28 (ENSPPYG00000006007) #28	FLVCR2 (ENSPPYG00000006006) #26	BATF (ENSPPYG00000006005)	JDP2 (ENSPPYG00000006004) #25	FOS (ENSPPYG00000006002)	TMED10 (ENSPPYG00000029389)	NEK9 (ENSPPYG00000006000) #21	ZC2HC1C (ENSPPYG00000005999)	ENSPPYG00000033140 #22	MLH3 (ENSPPYG00000005997) #23	EIF2B2 (ENSPPYG00000005996)	ENSPPYG00000005995	RPS6KL1 (ENSPPYG00000005994) #37	DLST (ENSPPYG00000005993) #36	ENSPPYG00000005992 #35	YLPM1 (ENSPPYG00000029595)	FCF1 (ENSPPYG00000005991)	AREL1 (ENSPPYG00000005990)	LTBP2 (ENSPPYG00000005989)	ISCA2 (ENSPPYG00000005988) #12	ENSPPYG00000005987 #11	SYNDIG1L (ENSPPYG00000005986)	VRTN (ENSPPYG00000005985)	ABCD4 (ENSPPYG00000005983)
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	12	ENSGT00940000153433.A #34	ENSGT00410000025698.b #33	ENSGT00940000153654.tb.a	ENSGT00390000012060 #32	ENSGT00940000155747 #31	ENSGT00940000162939	ENSGT00390000010925 #28	ENSGT01030000234625.B.d #26	ENSGT00390000000153.l.a.cb.i.b.a.a	ENSGT00940000159745	ENSGT00940000155693 #25	ENSGT00940000159276	ENSGT00550000074954.bb	ENSGT00940000156145 #21	ENSGT00940000160947	ENSGT00390000011103.B.j #22	ENSGT00800000124176 #23	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815 #37	ENSGT00930000151014.h.a #36	ENSGT00940000154790.b #35	ENSGT00440000039837	ENSGT00940000153117.B.d.b	ENSGT00940000156723	ENSGT00940000160884	ENSGT00910000148032	ENSGT00390000005700.a.b #12	ENSGT00940000160251.h	ENSGT00390000006223 #11	ENSGT00950000183147.A.a
Gorilla	MODERN SPECIES	5	ESRRB (ENSGGOG00000002238) #34	GPATCH2L (ENSGGOG00000005602) #33	ENSGGOG00000042391	IFT43 (ENSGGOG00000001483) #32	TGFB3 (ENSGGOG00000001481) #31	TTLL5 (ENSGGOG00000016703)	ERG28 (ENSGGOG00000006493) #28	ENSGGOG00000036834	FLVCR2 (ENSGGOG00000009014) #26	BATF (ENSGGOG00000002267)	JDP2 (ENSGGOG00000043596) #25	FOS (ENSGGOG00000000527)	TMED10 (ENSGGOG00000007453)	NEK9 (ENSGGOG00000027555) #21	ZC2HC1C (ENSGGOG00000024326)	ENSGGOG00000042048 #22	MLH3 (ENSGGOG00000037041) #23	EIF2B2 (ENSGGOG00000000514)	ENSGGOG00000014737	RPS6KL1 (ENSGGOG00000011607) #37	DLST (ENSGGOG00000011591) #36	PROX2 (ENSGGOG00000022893) #35	YLPM1 (ENSGGOG00000014195)	ENSGGOG00000016318	AREL1 (ENSGGOG00000008612)	ENSGGOG00000037625	LTBP2 (ENSGGOG00000012899)	ISCA2 (ENSGGOG00000027499) #12	ENSGGOG00000036134	ENSGGOG00000012886 #11	SYNDIG1L (ENSGGOG00000008787)
Gibbon	MODERN SPECIES	14	ENSNLEG00000029341	IFT43 (ENSNLEG00000016594) #32	ENSNLEG00000033016	TGFB3 (ENSNLEG00000016576) #31	TTLL5 (ENSNLEG00000016528)	ENSNLEG00000033370	FLVCR2 (ENSNLEG00000016498) #26	ERG28 (ENSNLEG00000016519) #28	BATF (ENSNLEG00000016492)	JDP2 (ENSNLEG00000016475) #25	ENSNLEG00000034123	FOS (ENSNLEG00000031753)	TMED10 (ENSNLEG00000030333)	NEK9 (ENSNLEG00000016445) #21	ZC2HC1C (ENSNLEG00000016444)	ENSNLEG00000016441 #22	MLH3 (ENSNLEG00000016412) #23	EIF2B2 (ENSNLEG00000016383)	ENSNLEG00000016375	RPS6KL1 (ENSNLEG00000016363) #37	DLST (ENSNLEG00000016330) #36	PROX2 (ENSNLEG00000016325) #35	YLPM1 (ENSNLEG00000016312)	ENSNLEG00000016311	AREL1 (ENSNLEG00000016294)	LTBP2 (ENSNLEG00000016271)	ENSNLEG00000016269	ISCA2 (ENSNLEG00000016268) #12	ENSNLEG00000033895 #11	ENSNLEG00000032793	SYNDIG1L (ENSNLEG00000016258)
Cercopithecidae	ANCESTRAL SPECIES	177																ENSGT00390000011103.B.j #22	ENSGT00550000075160.w
Cercopithecinae	ANCESTRAL SPECIES	166																ENSGT00390000011103.B.j #22	ENSGT00550000075160.w
Cercopithecinae_a	ANCESTRAL SPECIES	6	ENSGT00940000156953	ENSGT01060000248564.a.a	ENSGT00390000004211	ENSGT00900000143774	ENSGT00940000156096	ENSGT00390000011376.e.a	ENSGT00530000063407.a	ENSGT00950000182827.E	ENSGT00390000016036	ENSGT00390000010837	ENSGT00390000011674	ENSGT00950000183034.C	ENSGT01010000222360.D.b.o.a.a	ENSGT00390000012242	ENSGT01010000222287.B.b.a.a.b	ENSGT00390000011103.B.j #22	ENSGT00550000075160.w	ENSGT00390000008099.w.a.a	ENSGT00940000153511.b	ENSGT00990000213706	ENSGT00950000182856.a.b	ENSGT00530000063775	ENSGT01050000244891.C.c.a.h	ENSGT00940000155566	ENSGT00390000003628.b.c.a	ENSGT00390000009631	ENSGT00650000093438	ENSGT00940000155536	ENSGT00940000161538	ENSGT00950000183068.b	ENSGT00390000000155.b
Macaca	ANCESTRAL SPECIES	9	ENSGT00970000193421.B.w.a	ENSGT00940000156953	ENSGT01060000248564.a.a	ENSGT00390000004211	ENSGT00900000143774	ENSGT00940000156096	ENSGT00390000011376.e.a	ENSGT00530000063407.a	ENSGT00950000182827.E	ENSGT00390000016036	ENSGT00390000010837	ENSGT00390000011674	ENSGT00950000183034.C	ENSGT00390000012242	ENSGT01010000222287.B.b.a.a.b	ENSGT00390000011103.B.j #22	ENSGT00550000075160.w	ENSGT00940000153511.b	ENSGT00990000213706	ENSGT00950000182856.a.b	ENSGT00530000063775	ENSGT00940000155566	ENSGT00390000003628.b.c.a	ENSGT00390000009631	ENSGT00650000093438	ENSGT00940000155536	ENSGT00940000161538	ENSGT00950000183068.b	ENSGT00390000000155.b	ENSGT00390000009405.b.c.a.a.d.b.b.a.a.b.b	ENSGT00950000183134.c.a.b
Pig-tailed macaque	MODERN SPECIES	79	ENSMNEG00000035079	RNGTT (ENSMNEG00000040764)	ENSMNEG00000023905	SPACA1 (ENSMNEG00000040936)	ENSMNEG00000045243	AKIRIN2 (ENSMNEG00000040114)	ORC3 (ENSMNEG00000030771)	RARS2 (ENSMNEG00000043383)	SLC35A1 (ENSMNEG00000038937)	CFAP206 (ENSMNEG00000029408)	C6orf163 (ENSMNEG00000045491)	SMIM8 (ENSMNEG00000042949)	ZNF292 (ENSMNEG00000043433)	CGA (ENSMNEG00000045132)	HTR1E (ENSMNEG00000004973)	ENSMNEG00000037112 #22	ENSMNEG00000038120	ENSMNEG00000026998	SYNCRIP (ENSMNEG00000042077)	SNX14 (ENSMNEG00000011232)	NT5E (ENSMNEG00000029383)	ENSMNEG00000041967	TBX18 (ENSMNEG00000030118)	ENSMNEG00000041884	CEP162 (ENSMNEG00000030130)	MRAP2 (ENSMNEG00000044397)	CYB5R4 (ENSMNEG00000038845)	RIPPLY2 (ENSMNEG00000036034)	SNAP91 (ENSMNEG00000033329)	PRSS35 (ENSMNEG00000014967)	ENSMNEG00000009660
Macaca_a	ANCESTRAL SPECIES	9	ENSGT00970000193421.B.w.a	ENSGT00940000156953	ENSGT01060000248564.a.a	ENSGT00390000004211	ENSGT00940000156096	ENSGT00390000011376.e.a	ENSGT00530000063407.a	ENSGT00950000182827.E	ENSGT00390000016036	ENSGT00390000010837	ENSGT00390000011674	ENSGT00950000183034.C	ENSGT00390000012242	ENSGT01010000222287.B.b.a.a.b	ENSGT00940000166143.A.a.b.b.b.b.b.a.a.a.a.b.a	ENSGT00390000011103.B.j #22	ENSGT00940000153511.b	ENSGT00990000213706	ENSGT00950000182856.a.b	ENSGT00530000063775	ENSGT01100000263493.a.b.a.a.a.b.a.a.b.b.a.b.b.b.a.a.b.b.a.a	ENSGT00940000155566	ENSGT00390000009631	ENSGT00650000093438	ENSGT00940000155536	ENSGT00950000183068.b	ENSGT00390000000155.b	ENSGT00390000009405.b.c.a.a.d.b.b.a.a.b.b	ENSGT00950000183134.c.a.b	ENSGT00390000007224.a	ENSGT00390000000509
Rhesus	MODERN SPECIES	14	PM20D2 (ENSMMUG00000014942)	SRSF12 (ENSMMUG00000014941)	RNGTT (ENSMMUG00000020097)	CNR1 (ENSMMUG00000000763)	SPACA1 (ENSMMUG00000004947)	AKIRIN2 (ENSMMUG00000002824)	ORC3 (ENSMMUG00000002821)	RARS2 (ENSMMUG00000017039)	SLC35A1 (ENSMMUG00000017028)	CFAP206 (ENSMMUG00000045108)	C4H6orf163 (ENSMMUG00000022466)	ZNF292 (ENSMMUG00000022458)	CGA (ENSMMUG00000000222)	HTR1E (ENSMMUG00000000223)	ENSMMUG00000061131	ENSMMUG00000003126 #22	ENSMMUG00000055141	SYNCRIP (ENSMMUG00000012575)	SNX14 (ENSMMUG00000005446)	ENSMMUG00000064804	NT5E (ENSMMUG00000005442)	ENSMMUG00000061590	TBX18 (ENSMMUG00000010599)	CEP162 (ENSMMUG00000021072)	CYB5R4 (ENSMMUG00000009585)	SNAP91 (ENSMMUG00000016703)	PRSS35 (ENSMMUG00000016702)	ENSMMUG00000029549	ME1 (ENSMMUG00000012592)	RWDD2A (ENSMMUG00000012590)	PGM3 (ENSMMUG00000012589)
Crab-eating macaque	MODERN SPECIES	14	SPACA1 (ENSMFAG00000046308)	AKIRIN2 (ENSMFAG00000023644)	ORC3 (ENSMFAG00000041907)	ENSMFAG00000060786	RARS2 (ENSMFAG00000039420)	SLC35A1 (ENSMFAG00000001045)	ENSMFAG00000056350	CFAP206 (ENSMFAG00000035889)	C6orf163 (ENSMFAG00000045620)	ENSMFAG00000053614	SMIM8 (ENSMFAG00000000775)	ZNF292 (ENSMFAG00000045756)	CGA (ENSMFAG00000037707)	HTR1E (ENSMFAG00000030866)	ENSMFAG00000051092	ENSMFAG00000042252 #22	SYNCRIP (ENSMFAG00000036355)	SNX14 (ENSMFAG00000010669)	ENSMFAG00000053670	NT5E (ENSMFAG00000033027)	ENSMFAG00000061273	ENSMFAG00000056085	ENSMFAG00000049520	TBX18 (ENSMFAG00000039688)	CEP162 (ENSMFAG00000031492)	MRAP2 (ENSMFAG00000038052)	CYB5R4 (ENSMFAG00000036090)	ENSMFAG00000050034	ENSMFAG00000064220	ENSMFAG00000058365	SNAP91 (ENSMFAG00000045148)
Cercopithecinae_b	ANCESTRAL SPECIES	187																ENSGT00390000011103.B.j #22	ENSGT00550000075160.w
Olive baboon	MODERN SPECIES	16	RNGTT (ENSPANG00000010454)	CNR1 (ENSPANG00000018644)	SPACA1 (ENSPANG00000023127)	ENSPANG00000039569	AKIRIN2 (ENSPANG00000020357)	ORC3 (ENSPANG00000001079)	RARS2 (ENSPANG00000000663)	SLC35A1 (ENSPANG00000011579)	CFAP206 (ENSPANG00000024964)	C6orf163 (ENSPANG00000006405)	ENSPANG00000020538	ZNF292 (ENSPANG00000007401)	ENSPANG00000039493	HTR1E (ENSPANG00000005474)	ENSPANG00000050985	ENSPANG00000031494 #22	ENSPANG00000044032	SYNCRIP (ENSPANG00000017405)	SNX14 (ENSPANG00000009855)	NT5E (ENSPANG00000026149)	TBX18 (ENSPANG00000025136)	ENSPANG00000047796	CEP162 (ENSPANG00000000894)	MRAP2 (ENSPANG00000044160)	ENSPANG00000051411	CYB5R4 (ENSPANG00000023290)	SNAP91 (ENSPANG00000025455)	ENSPANG00000046581	ENSPANG00000050132	ENSPANG00000038747	ENSPANG00000037360
Cercopithecinae_d	ANCESTRAL SPECIES	125																ENSGT00390000011103.B.j #22	ENSGT00550000075160.w	ENSGT00390000008099.w.a.a	ENSGT00940000153511.b	ENSGT00950000182856.a.b	ENSGT00530000063775	ENSGT01050000244891.C.c.a.h	ENSGT00940000155566	ENSGT00390000009631	ENSGT00650000093438	ENSGT00940000155536	ENSGT00940000161538	ENSGT00950000183068.b	ENSGT00390000000155.b	ENSGT00390000009405.b.c.a.a.d.b.b.a.a.b.b	ENSGT00950000183134.c.a.b
Sooty mangabey	MODERN SPECIES	302																ENSCATG00000032059 #22	ENSCATG00000022900	ENSCATG00000014387	SYNCRIP (ENSCATG00000034066)	SNX14 (ENSCATG00000038437)	NT5E (ENSCATG00000036039)	ENSCATG00000018289	ENSCATG00000036692	TBX18 (ENSCATG00000032692)	ENSCATG00000036000	ENSCATG00000031338
Rhinopithecus	ANCESTRAL SPECIES	346		ENSGT01060000248564.a.a	ENSGT00390000004211	ENSGT00940000156096	ENSGT00390000011376.e.a	ENSGT00530000063407.a	ENSGT00950000182827.E	ENSGT00390000016036	ENSGT00390000010837	ENSGT00390000011674	ENSGT01030000234513.A.a.b	ENSGT00950000183034.C	ENSGT01010000222360.D.b.o.a.a	ENSGT00390000012242	ENSGT01010000222287.B.b.a.a.b	ENSGT00390000011103.B.j #22	ENSGT00550000075160.w
Black snub-nosed monkey	MODERN SPECIES	2157															HTR1E (ENSRBIG00000000207)	ENSRBIG00000038647 #22	ENSRBIG00000000336
Platyrrhini	ANCESTRAL SPECIES	4	ENSGT00940000159057	ENSGT00390000012703.b	ENSGT00940000153433.A #34	ENSGT00410000025698.b #33	ENSGT00390000012060 #32	ENSGT00940000155747 #31	ENSGT00940000162939	ENSGT00390000010925 #28	ENSGT01030000234625.B.d #26	ENSGT00940000159745	ENSGT00940000155693 #25	ENSGT00940000159276	ENSGT00550000074954.bb	ENSGT00940000156145 #21	ENSGT00940000160947	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815 #37	ENSGT00930000151014 #36	ENSGT00390000000227.g.a	ENSGT00940000154790.b #35	ENSGT00440000039837	ENSGT00940000153117.B.d.b.a	ENSGT00940000156723	ENSGT00910000147973	ENSGT00940000160884	ENSGT00390000005700.a.a #12	ENSGT00390000006223 #11	ENSGT00940000160251.h.a
Cebidae	ANCESTRAL SPECIES	3	ENSGT00940000159057	ENSGT00390000012703.b	ENSGT00940000153433.A #34	ENSGT00410000025698.b #33	ENSGT00390000012060 #32	ENSGT00940000155747 #31	ENSGT00940000162939	ENSGT00390000010925 #28	ENSGT01030000234625.B.d #26	ENSGT00940000159745	ENSGT00940000155693 #25	ENSGT00940000159276	ENSGT00550000074954.bb	ENSGT00940000156145 #21	ENSGT00940000160947	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815 #37	ENSGT00930000151014 #36	ENSGT00390000000227.g.a	ENSGT00940000154790.b #35	ENSGT00440000039837	ENSGT00940000153117.B.d.b.a	ENSGT00940000156723	ENSGT00910000147973	ENSGT00940000160884	ENSGT00390000005700.a.a #12	ENSGT00940000160251.h.a	ENSGT00390000006223 #11
Marmoset	MODERN SPECIES	1	GPATCH2L (ENSCJAG00000020696) #33	ENSCJAG00000086204	IFT43 (ENSCJAG00000020692) #32	TGFB3 (ENSCJAG00000020680) #31	ENSCJAG00000077148	TTLL5 (ENSCJAG00000020665)	ERG28 (ENSCJAG00000020659) #28	FLVCR2 (ENSCJAG00000020653) #26	BATF (ENSCJAG00000081507)	JDP2 (ENSCJAG00000020645) #25	ENSCJAG00000085859	FOS (ENSCJAG00000020633)	TMED10 (ENSCJAG00000057118)	NEK9 (ENSCJAG00000020610) #21	ZC2HC1C (ENSCJAG00000046911)	ENSCJAG00000083598 #22	MLH3 (ENSCJAG00000020596) #23	EIF2B2 (ENSCJAG00000044557)	PGF (ENSCJAG00000020572)	RPS6KL1 (ENSCJAG00000020566) #37	DLST (ENSCJAG00000020551) #36	PROX2 (ENSCJAG00000020548) #35	YLPM1 (ENSCJAG00000020522)	FCF1 (ENSCJAG00000020518)	AREL1 (ENSCJAG00000020497)	LTBP2 (ENSCJAG00000020480)	ENSCJAG00000020479 #12	ENSCJAG00000057253	NPC2 (ENSCJAG00000020476) #11	SYNDIG1L (ENSCJAG00000072523)	ENSCJAG00000075451
Cebidae_a	ANCESTRAL SPECIES	4	ENSGT00940000159057	ENSGT00390000012703.b	ENSGT00940000153433.A.a #34	ENSGT00410000025698.b #33	ENSGT00390000012060 #32	ENSGT00940000155747 #31	ENSGT00940000162939	ENSGT00390000010925 #28	ENSGT01030000234625.B.d #26	ENSGT00940000159745	ENSGT00940000155693 #25	ENSGT00940000159276	ENSGT00550000074954.bb	ENSGT00940000156145 #21	ENSGT00940000160947	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815 #37	ENSGT00930000151014 #36	ENSGT00390000000227.g.a	ENSGT00940000154790.b #35	ENSGT00440000039837	ENSGT00940000153117.B.d.b.a	ENSGT00940000156723	ENSGT00910000147973	ENSGT00940000160884	ENSGT00390000005700.a.a #12	ENSGT00940000160251.h.a	ENSGT00390000006223 #11
Bolivian squirrel monkey	MODERN SPECIES	52	GPATCH2L (ENSSBOG00000021130) #33	IFT43 (ENSSBOG00000021074) #32	TGFB3 (ENSSBOG00000032025) #31	TTLL5 (ENSSBOG00000027627)	ERG28 (ENSSBOG00000019224) #28	FLVCR2 (ENSSBOG00000030433) #26	ENSSBOG00000006701	BATF (ENSSBOG00000034354)	JDP2 (ENSSBOG00000033222) #25	AIF1 (ENSSBOG00000020993)	FOS (ENSSBOG00000021663)	ENSSBOG00000022826	TMED10 (ENSSBOG00000023014)	NEK9 (ENSSBOG00000021585) #21	ZC2HC1C (ENSSBOG00000022385)	ENSSBOG00000030708 #22	MLH3 (ENSSBOG00000018430) #23	EIF2B2 (ENSSBOG00000009267)	PGF (ENSSBOG00000021274)	RPS6KL1 (ENSSBOG00000021119) #37	DLST (ENSSBOG00000020050) #36	PROX2 (ENSSBOG00000035644) #35	YLPM1 (ENSSBOG00000020052)	ENSSBOG00000024765	AREL1 (ENSSBOG00000031683)	LTBP2 (ENSSBOG00000025865)	ENSSBOG00000031449 #12	ENSSBOG00000028294	NPC2 (ENSSBOG00000023280) #11	SYNDIG1L (ENSSBOG00000034851)	ABCD4 (ENSSBOG00000033353)
Capuchin	MODERN SPECIES	54	ENSCCAG00000031372 #34	GPATCH2L (ENSCCAG00000034431) #33	IFT43 (ENSCCAG00000019476) #32	ENSCCAG00000023000	TGFB3 (ENSCCAG00000024389) #31	TTLL5 (ENSCCAG00000032726)	ENSCCAG00000029450	FLVCR2 (ENSCCAG00000022530) #26	ERG28 (ENSCCAG00000033804) #28	BATF (ENSCCAG00000037730)	JDP2 (ENSCCAG00000029129) #25	FOS (ENSCCAG00000025794)	TMED10 (ENSCCAG00000038051)	NEK9 (ENSCCAG00000027751) #21	ZC2HC1C (ENSCCAG00000009576)	ENSCCAG00000037698 #22	MLH3 (ENSCCAG00000028660) #23	EIF2B2 (ENSCCAG00000034957)	PGF (ENSCCAG00000019441)	RPS6KL1 (ENSCCAG00000029866) #37	ENSCCAG00000027520 #36	ENSCCAG00000035622	PROX2 (ENSCCAG00000026255) #35	YLPM1 (ENSCCAG00000024788)	FCF1 (ENSCCAG00000032200)	AREL1 (ENSCCAG00000037317)	ENSCCAG00000029235	LTBP2 (ENSCCAG00000027073)	ISCA2 (ENSCCAG00000029795) #12	ENSCCAG00000022939 #11	ENSCCAG00000036597
Mas night monkey	MODERN SPECIES	825		ESRRB (ENSANAG00000034038) #34	GPATCH2L (ENSANAG00000034936) #33	IFT43 (ENSANAG00000033839) #32	TGFB3 (ENSANAG00000029184) #31	TTLL5 (ENSANAG00000035139)	FLVCR2 (ENSANAG00000026869) #26	ERG28 (ENSANAG00000032608) #28	BATF (ENSANAG00000031689)	JDP2 (ENSANAG00000034209) #25	FOS (ENSANAG00000029534)	ENSANAG00000019432	TMED10 (ENSANAG00000022267)	NEK9 (ENSANAG00000016195) #21	ZC2HC1C (ENSANAG00000026717)	ENSANAG00000026223 #22	MLH3 (ENSANAG00000022727) #23	EIF2B2 (ENSANAG00000025345)	PGF (ENSANAG00000032847)	RPS6KL1 (ENSANAG00000030516) #37	DLST (ENSANAG00000035966) #36	PROX2 (ENSANAG00000038021) #35	YLPM1 (ENSANAG00000024403)	ENSANAG00000026765	AREL1 (ENSANAG00000027921)	ENSANAG00000023213	LTBP2 (ENSANAG00000036688)	ENSANAG00000028498 #12	NPC2 (ENSANAG00000035008) #11	ENSANAG00000021950	SYNDIG1L (ENSANAG00000024522)
Tarsier	MODERN SPECIES	5507						ENSTSYG00000013572	ENSTSYG00000030978 #29	FLVCR2 (ENSTSYG00000013562) #26	ERG28 (ENSTSYG00000035814) #28	BATF (ENSTSYG00000005296)	JDP2 (ENSTSYG00000031315) #25	FOS (ENSTSYG00000013658)	TMED10 (ENSTSYG00000031453)	NEK9 (ENSTSYG00000005042) #21	ZC2HC1C (ENSTSYG00000003113)	ACYP1 (ENSTSYG00000000755) #22	MLH3 (ENSTSYG00000000754) #23	EIF2B2 (ENSTSYG00000034108)	PGF (ENSTSYG00000035657)	RPS6KL1 (ENSTSYG00000037448) #37	DLST (ENSTSYG00000007937) #36	PROX2 (ENSTSYG00000025782) #35	YLPM1 (ENSTSYG00000009612)
Sauria	ANCESTRAL SPECIES	3	ENSGT00390000012703.b	ENSGT00940000153433.A #34	ENSGT00410000025698.b #33	ENSGT00390000012060 #32	ENSGT00940000155747 #31	ENSGT00940000162939	ENSGT00940000162910 #29	ENSGT00390000010925 #28	ENSGT01030000234625.B.d #26	ENSGT00940000159745	ENSGT00940000155693 #25	ENSGT00940000159276	ENSGT00550000074954	ENSGT00940000156145 #21	ENSGT00940000160947	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815 #37	ENSGT00930000151014 #36	ENSGT00940000154790.b #35	ENSGT00440000039837	ENSGT00940000153117.B	ENSGT00940000156723	ENSGT00940000160884	ENSGT00390000006223 #11	ENSGT00390000005700 #12	ENSGT00950000183147.A.a	ENSGT00390000007874	ENSGT00950000182955.a.a.b
Lepidosauria	ANCESTRAL SPECIES	24	ENSGT00390000012703.b	ENSGT00940000153433.A #34	ENSGT00410000025698.b #33	ENSGT00390000012060 #32	ENSGT00940000155747 #31	ENSGT00940000162939	ENSGT00940000162910 #29	ENSGT00390000010925 #28	ENSGT01030000234625.B.d #26	ENSGT00940000159745	ENSGT00940000155693 #25	ENSGT00940000159276	ENSGT00550000074954	ENSGT00940000156145 #21	ENSGT00940000160947	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815 #37	ENSGT00930000151014 #36	ENSGT00940000154790.b #35	ENSGT00440000039837	ENSGT00940000153117.B	ENSGT00940000156723	ENSGT00940000160884	ENSGT00390000006223 #11	ENSGT00390000005700 #12	ENSGT00950000183147.A.a	ENSGT00390000007874	ENSGT00950000182955.a.a.b
Episquamata	ANCESTRAL SPECIES		ENSGT00390000012703.b	ENSGT00940000153433.A #34	ENSGT00410000025698.b #33	ENSGT00390000012060 #32	ENSGT00940000155747 #31	ENSGT00940000162939	ENSGT00940000162910 #29	ENSGT00390000010925 #28	ENSGT01030000234625.B.d #26	ENSGT00940000159745	ENSGT00940000155693 #25	ENSGT00940000159276	ENSGT00550000074954	ENSGT00940000156145 #21	ENSGT00940000160947	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815 #37	ENSGT00930000151014 #36	ENSGT00940000154790.b #35	ENSGT00440000039837	ENSGT00940000153117.B	ENSGT00940000156723	ENSGT00940000160884	ENSGT00390000006223 #11	ENSGT00390000005700 #12	ENSGT00950000183147.A.a	ENSGT00390000007874	ENSGT00950000182955.a.a.b
Laterata	ANCESTRAL SPECIES	2	ENSGT00940000154297.A	ENSGT00940000159057	ENSGT00390000012703.b	ENSGT00940000153433.A #34	ENSGT00410000025698.b #33	ENSGT00390000012060 #32	ENSGT00940000155747 #31	ENSGT00940000162910 #29	ENSGT00390000010925 #28	ENSGT01030000234625.B.d #26	ENSGT00940000159745	ENSGT00940000155693 #25	ENSGT00940000159276	ENSGT00940000156145 #21	ENSGT00940000160947	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815 #37	ENSGT00930000151014 #36	ENSGT00940000154790.b #35	ENSGT00440000039837	ENSGT00940000153117.B	ENSGT00940000156723	ENSGT00940000160884	ENSGT00390000006223 #11	ENSGT00390000005700 #12	ENSGT00950000183147.A.a.f	ENSGT00390000007874	ENSGT00950000182955.a.a.b
Common wall lizard	DUPLICATION
Common wall lizard	MODERN SPECIES	7	SPRING1 (ENSPMRG00000022424)	RNFT2 (ENSPMRG00000022420)	FBXW8 (ENSPMRG00000022414)	TESC (ENSPMRG00000022412)	FBXO21 (ENSPMRG00000022405)	NOS1 (ENSPMRG00000022223)	KSR2 (ENSPMRG00000022085)	ENSPMRG00000022070	RFC5 (ENSPMRG00000022062)	WSB2 (ENSPMRG00000022010)	VSIG10 (ENSPMRG00000021988)	ENSPMRG00000021974	CHCHD10 (ENSPMRG00000021968)	ACTN3 (ENSPMRG00000021936)	RCE1 (ENSPMRG00000021918)	ENSPMRG00000021904 #22	SPTBN2 (ENSPMRG00000018670)	ENSPMRG00000018051	ENSPMRG00000018042	CCS (ENSPMRG00000018036)	ENSPMRG00000018033	ENSPMRG00000018028	ZNRD2 (ENSPMRG00000018023)	FAM89B (ENSPMRG00000018002)	EHBP1L1 (ENSPMRG00000018331)	ENSPMRG00000018311	MAP3K11 (ENSPMRG00000018289)	PCNX3 (ENSPMRG00000017899)	SIPA1 (ENSPMRG00000017809)	ENSPMRG00000017804	ENSPMRG00000017800
Common wall lizard	DUPLICATION
Common wall lizard	MODERN SPECIES		GPATCH2L (ENSPMRG00000006752) #33	IFT43 (ENSPMRG00000006760) #32	TGFB3 (ENSPMRG00000006766) #31	ENSPMRG00000006771	ENSPMRG00000006845 #29	ERG28 (ENSPMRG00000007143) #28	FLVCR2 (ENSPMRG00000007159) #26	BATF (ENSPMRG00000007182)	JDP2 (ENSPMRG00000007196) #25	FOS (ENSPMRG00000007201)	ENSPMRG00000007221	ENSPMRG00000007248 #21	TMED10 (ENSPMRG00000007264)	ENSPMRG00000007335 #21	ZC2HC1C (ENSPMRG00000007516)	ENSPMRG00000007523 #22	MLH3 (ENSPMRG00000007542) #23	EIF2B2 (ENSPMRG00000007566)	PGF (ENSPMRG00000007576)	RPS6KL1 (ENSPMRG00000007595) #37	DLST (ENSPMRG00000007614) #36	PROX2 (ENSPMRG00000007626) #35	YLPM1 (ENSPMRG00000007645)	FCF1 (ENSPMRG00000007667)	AREL1 (ENSPMRG00000007679)	LTBP2 (ENSPMRG00000007807)	NPC2 (ENSPMRG00000008478) #11	ISCA2 (ENSPMRG00000008488) #12	ENSPMRG00000008501	SYNDIG1L (ENSPMRG00000008514)	ENSPMRG00000008522
Common wall lizard	MODERN SPECIES	17	ENSPMRG00000010132	PAPSS1 (ENSPMRG00000010139)	ENSPMRG00000010155	ENSPMRG00000010164	GIMD1 (ENSPMRG00000010172)	AIMP1 (ENSPMRG00000010179)	TBCK (ENSPMRG00000010184)	ENSPMRG00000010190	NPNT (ENSPMRG00000010192)	ENSPMRG00000010200	INTS12 (ENSPMRG00000010205)	ARHGEF38 (ENSPMRG00000010211)	PPA2 (ENSPMRG00000010217)	ENSPMRG00000010222	ENSPMRG00000010229	ENSPMRG00000010230 #22	CXXC4 (ENSPMRG00000010237)	TACR3 (ENSPMRG00000010244)	ENSPMRG00000010251	ENSPMRG00000010259	BDH2 (ENSPMRG00000010262)	ENSPMRG00000010265	ENSPMRG00000010272	ENSPMRG00000010284	CISD2 (ENSPMRG00000010288)	UBE2D3 (ENSPMRG00000010295)	MANBA (ENSPMRG00000010310)	NFKB1 (ENSPMRG00000010478)	SLC39A8 (ENSPMRG00000011020)	ENSPMRG00000011026	PPP3CA (ENSPMRG00000011036)
Argentine black and white tegu	DUPLICATION
Argentine black and white tegu	MODERN SPECIES	80					BRMS1 (ENSSMRG00000020237)	B4GAT1 (ENSSMRG00000020238)	SLC29A2 (ENSSMRG00000020239)	NPAS4 (ENSSMRG00000020240)	MRPL11 (ENSSMRG00000020329)	ENSSMRG00000020334	GAL3ST3 (ENSSMRG00000020335)	SF3B2 (ENSSMRG00000020336)	ENSSMRG00000020340	ACTN3 (ENSSMRG00000020342)	RCE1 (ENSSMRG00000020343)	ENSSMRG00000020346 #22	SPTBN2 (ENSSMRG00000020347)	ENSSMRG00000020348	ENSSMRG00000020349	CCS (ENSSMRG00000020350)	RBM14 (ENSSMRG00000020351)	POLA2 (ENSSMRG00000020352)	DPF2 (ENSSMRG00000020354)	CHRM1 (ENSSMRG00000020355)	ENSSMRG00000020357	ENSSMRG00000020358	ENSSMRG00000020359	ENSSMRG00000020360	OVOL1 (ENSSMRG00000020361)	AP5B1 (ENSSMRG00000020362)	ENSSMRG00000020363
Argentine black and white tegu	MODERN SPECIES	14	VASH1 (ENSSMRG00000012505)	ESRRB (ENSSMRG00000012529) #34	GPATCH2L (ENSSMRG00000012542) #33	IFT43 (ENSSMRG00000012543) #32	TGFB3 (ENSSMRG00000012564) #31	ENSSMRG00000012566 #29	ERG28 (ENSSMRG00000012567) #28	FLVCR2 (ENSSMRG00000012568) #26	BATF (ENSSMRG00000012569)	JDP2 (ENSSMRG00000012575) #25	FOS (ENSSMRG00000012578)	ENSSMRG00000012579	TMED10 (ENSSMRG00000012581)	NEK9 (ENSSMRG00000012582) #21	ZC2HC1C (ENSSMRG00000012583)	ENSSMRG00000012584 #22	ENSSMRG00000012585 #23	ENSSMRG00000012587 #23	EIF2B2 (ENSSMRG00000012590)	PGF (ENSSMRG00000012606)	RPS6KL1 (ENSSMRG00000012608) #37	DLST (ENSSMRG00000012609) #36	PROX2 (ENSSMRG00000012610) #35	YLPM1 (ENSSMRG00000012612)	FCF1 (ENSSMRG00000012613)	AREL1 (ENSSMRG00000012614)	LTBP2 (ENSSMRG00000012625)	NPC2 (ENSSMRG00000012626) #11	ISCA2 (ENSSMRG00000012627) #12	SYNDIG1L (ENSSMRG00000012632)	VRTN (ENSSMRG00000012633)
Toxicofera	ANCESTRAL SPECIES	5	ENSGT00390000012703.b	ENSGT00940000153433.A #34	ENSGT00410000025698.b #33	ENSGT00390000012060 #32	ENSGT00940000155747 #31	ENSGT00940000162939	ENSGT00940000162910 #29	ENSGT00390000010925 #28	ENSGT01030000234625.B.d #26	ENSGT00940000159745	ENSGT00940000155693 #25	ENSGT00940000159276	ENSGT00550000074954	ENSGT00940000156145 #21	ENSGT00940000160947	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815 #37	ENSGT00930000151014 #36	ENSGT00940000154790.b #35	ENSGT00440000039837.e	ENSGT00940000153117.B	ENSGT00940000156723	ENSGT00940000160884	ENSGT00390000006223 #11	ENSGT00390000005700 #12	ENSGT00950000183147.A.a	ENSGT00390000007874	ENSGT00950000182955.a.a.b
Elapidae	ANCESTRAL SPECIES	3	ENSGT00390000012703.b	ENSGT00940000153433.A #34	ENSGT00410000025698.b #33	ENSGT00390000012060 #32	ENSGT00940000155747 #31	ENSGT00940000162939	ENSGT00940000162910 #29	ENSGT00390000010925 #28	ENSGT01030000234625.B.d #26	ENSGT00940000159745	ENSGT00940000155693 #25	ENSGT00940000159276	ENSGT00550000074954	ENSGT00940000156145 #21	ENSGT00940000160947	ENSGT00390000011103.B #22	ENSGT00800000124176.x #23	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815 #37	ENSGT00930000151014 #36	ENSGT00940000154790.b #35	ENSGT00440000039837.e	ENSGT00940000153117.B	ENSGT00940000156723	ENSGT00940000160884	ENSGT00390000006223 #11	ENSGT00390000005700 #12	ENSGT00950000183147.A.a	ENSGT00390000007874	ENSGT00950000182955.a.a.b
Elapidae_a	ANCESTRAL SPECIES	4	ENSGT00390000012703.b	ENSGT00940000153433.A #34	ENSGT00410000025698.b #33	ENSGT00390000012060 #32	ENSGT00940000155747 #31	ENSGT00940000162939	ENSGT00940000162910 #29	ENSGT00390000010925 #28	ENSGT01030000234625.B.d #26	ENSGT00940000159745	ENSGT00940000155693 #25	ENSGT00940000159276	ENSGT00550000074954	ENSGT00940000156145 #21	ENSGT00940000160947	ENSGT00390000011103.B #22	ENSGT00800000124176.x #23	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815 #37	ENSGT00930000151014 #36	ENSGT00940000154790.b #35	ENSGT00440000039837.e	ENSGT00940000153117.B	ENSGT00940000156723	ENSGT00940000160884	ENSGT00390000006223 #11	ENSGT00390000005700 #12	ENSGT00950000183147.A.a	ENSGT00390000007874	ENSGT00950000182955.a.a.b
Acanthophiinae	ANCESTRAL SPECIES	6	ENSGT00390000012703.b	ENSGT00940000153433.A #34	ENSGT00410000025698.b #33	ENSGT00390000012060 #32	ENSGT00940000155747 #31	ENSGT00940000162939	ENSGT00940000162910 #29	ENSGT00390000010925 #28	ENSGT01030000234625.B.d.m #26	ENSGT00940000159745	ENSGT00940000155693 #25	ENSGT00940000159276	ENSGT00550000074954	ENSGT00940000156145 #21	ENSGT00940000160947	ENSGT00390000011103.B #22	ENSGT00800000124176.x #23	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815 #37	ENSGT00930000151014 #36	ENSGT00940000154790.b #35	ENSGT00440000039837.e	ENSGT00940000153117.B	ENSGT00940000156723	ENSGT00940000160884	ENSGT00390000006223 #11	ENSGT00390000005700 #12	ENSGT00950000183147.A.a	ENSGT00390000007874	ENSGT00950000182955.a.a.b
Mainland tiger snake	DUPLICATION
Mainland tiger snake	MODERN SPECIES	496												ENSNSUG00000007740	ACTN3 (ENSNSUG00000007742)	ENSNSUG00000007743	ENSNSUG00000007744	ENSNSUG00000007745 #22	ENSNSUG00000007762
Mainland tiger snake	MODERN SPECIES	8	ESRRB (ENSNSUG00000001841) #34	GPATCH2L (ENSNSUG00000001958) #33	TGFB3 (ENSNSUG00000001959) #31	TTLL5 (ENSNSUG00000002014)	ENSNSUG00000002024 #29	ERG28 (ENSNSUG00000002030) #28	ENSNSUG00000002040 #26	ENSNSUG00000002042	ENSNSUG00000002043 #26	BATF (ENSNSUG00000002044)	JDP2 (ENSNSUG00000002045) #25	FOS (ENSNSUG00000002048)	TMED10 (ENSNSUG00000002049)	NEK9 (ENSNSUG00000002051) #21	ZC2HC1C (ENSNSUG00000002058)	ENSNSUG00000002067 #22	MLH3 (ENSNSUG00000002069) #23	EIF2B2 (ENSNSUG00000002350)	RPS6KL1 (ENSNSUG00000002351) #37	DLST (ENSNSUG00000002388) #36	PROX2 (ENSNSUG00000002395) #35	YLPM1 (ENSNSUG00000002397)	FCF1 (ENSNSUG00000002881)	AREL1 (ENSNSUG00000002884)	LTBP2 (ENSNSUG00000002986)	NPC2 (ENSNSUG00000003016) #11	ISCA2 (ENSNSUG00000003017) #12	SYNDIG1L (ENSNSUG00000003021)	VRTN (ENSNSUG00000003032)	ABCD4 (ENSNSUG00000003033)	ENSNSUG00000003039
Eastern brown snake	DUPLICATION
Eastern brown snake	MODERN SPECIES	85	ENSPTXG00000010974	FIBP (ENSPTXG00000010975)	EFEMP2 (ENSPTXG00000010977)	ENSPTXG00000010978	CFL1 (ENSPTXG00000010979)	BRMS1 (ENSPTXG00000010980)	B4GAT1 (ENSPTXG00000010981)	SLC29A2 (ENSPTXG00000010982)	ENSPTXG00000010983	MRPL11 (ENSPTXG00000010984)	GAL3ST3 (ENSPTXG00000010985)	SF3B2 (ENSPTXG00000010986)	ENSPTXG00000010988	ACTN3 (ENSPTXG00000010990)	RCE1 (ENSPTXG00000010991)	ENSPTXG00000010992 #22	SPTBN2 (ENSPTXG00000010993)	CCDC87 (ENSPTXG00000010999)	CCS (ENSPTXG00000011001)	RBM14 (ENSPTXG00000011004)	ZNRD2 (ENSPTXG00000011003)	FAM89B (ENSPTXG00000011006)	EHBP1L1 (ENSPTXG00000011009)	ENSPTXG00000011011	ENSPTXG00000011020	F11R (ENSPTXG00000011023)	USF1 (ENSPTXG00000011026)	ARHGAP30 (ENSPTXG00000011027)	NECTIN4 (ENSPTXG00000011030)
Eastern brown snake	MODERN SPECIES	1	ANGEL1 (ENSPTXG00000004541)	VASH1 (ENSPTXG00000004540)	ESRRB (ENSPTXG00000004539) #34	GPATCH2L (ENSPTXG00000004538) #33	IFT43 (ENSPTXG00000004537) #32	TGFB3 (ENSPTXG00000004536) #31	ENSPTXG00000004534 #29	ERG28 (ENSPTXG00000004533) #28	FLVCR2 (ENSPTXG00000004532) #26	BATF (ENSPTXG00000004531)	JDP2 (ENSPTXG00000004530) #25	FOS (ENSPTXG00000004529)	TMED10 (ENSPTXG00000004528)	NEK9 (ENSPTXG00000004480) #21	ZC2HC1C (ENSPTXG00000004475)	ENSPTXG00000004474 #22	ENSPTXG00000004472 #23	ENSPTXG00000004470 #23	EIF2B2 (ENSPTXG00000004467)	PGF (ENSPTXG00000004465)	ENSPTXG00000004462	RPS6KL1 (ENSPTXG00000004436) #37	DLST (ENSPTXG00000004417) #36	PROX2 (ENSPTXG00000004414) #35	YLPM1 (ENSPTXG00000004411)	FCF1 (ENSPTXG00000004410)	AREL1 (ENSPTXG00000004408)	LTBP2 (ENSPTXG00000004404)	NPC2 (ENSPTXG00000004402) #11	ISCA2 (ENSPTXG00000004401) #12	SYNDIG1L (ENSPTXG00000004399)
Blue-lipped sea krait	DUPLICATION
Blue-lipped sea krait	MODERN SPECIES	9351																ENSLLTG00000015828 #22	ENSLLTG00000015873
Blue-lipped sea krait	MODERN SPECIES	7813														NEK9 (ENSLLTG00000006252) #21	ZC2HC1C (ENSLLTG00000006263)	ENSLLTG00000006271 #22	MLH3 (ENSLLTG00000006275) #23	EIF2B2 (ENSLLTG00000006289)
Indian cobra	DUPLICATION
Indian cobra	MODERN SPECIES	17	FOSL1 (ENSNNAG00000016109)	ENSNNAG00000016095	FIBP (ENSNNAG00000016071)	EFEMP2 (ENSNNAG00000016041)	MUS81 (ENSNNAG00000016013)	CFL1 (ENSNNAG00000016006)	SLC29A2 (ENSNNAG00000015993)	NPAS4 (ENSNNAG00000015984)	MRPL11 (ENSNNAG00000015970)	GAL3ST3 (ENSNNAG00000015957)	SF3B2 (ENSNNAG00000015781)	ENSNNAG00000015747	ENSNNAG00000015744	ACTN3 (ENSNNAG00000014941)	RCE1 (ENSNNAG00000014840)	ENSNNAG00000014825 #22	SPTBN2 (ENSNNAG00000007630)	ENSNNAG00000007057	ENSNNAG00000007044	ENSNNAG00000007026	CCS (ENSNNAG00000007019)	RBM14 (ENSNNAG00000007002)	ZNRD2 (ENSNNAG00000006993)	FAM89B (ENSNNAG00000006980)	EHBP1L1 (ENSNNAG00000006957)	ENSNNAG00000006939	MAP3K11 (ENSNNAG00000006874)	PCNX3 (ENSNNAG00000006800)	MEN1 (ENSNNAG00000006738)	MAP4K2 (ENSNNAG00000006655)	SF1 (ENSNNAG00000006618)
Indian cobra	MODERN SPECIES		ANGEL1 (ENSNNAG00000017146)	VASH1 (ENSNNAG00000017141)	ESRRB (ENSNNAG00000017128) #34	GPATCH2L (ENSNNAG00000017123) #33	ENSNNAG00000017111	TGFB3 (ENSNNAG00000017102) #31	ENSNNAG00000017067 #29	ERG28 (ENSNNAG00000017050) #28	FLVCR2 (ENSNNAG00000017019) #26	BATF (ENSNNAG00000017004)	JDP2 (ENSNNAG00000016998) #25	FOS (ENSNNAG00000016993)	TMED10 (ENSNNAG00000016991)	NEK9 (ENSNNAG00000016962) #21	ZC2HC1C (ENSNNAG00000016951)	ENSNNAG00000016948 #22	MLH3 (ENSNNAG00000016933) #23	EIF2B2 (ENSNNAG00000016926)	PGF (ENSNNAG00000016923)	RPS6KL1 (ENSNNAG00000016916) #37	DLST (ENSNNAG00000016902) #36	PROX2 (ENSNNAG00000016891) #35	ENSNNAG00000016875	ENSNNAG00000016859	FCF1 (ENSNNAG00000016842)	AREL1 (ENSNNAG00000016798)	LTBP2 (ENSNNAG00000012406)	NPC2 (ENSNNAG00000012028) #11	ISCA2 (ENSNNAG00000011983) #12	ENSNNAG00000011959	ENSNNAG00000011932
Lizard	DUPLICATION
Lizard	MODERN SPECIES	1428											ENSACAG00000008615	ENSACAG00000029584	ENSACAG00000008589	ENSACAG00000008455	ENSACAG00000008405	ENSACAG00000037360 #22
Lizard	MODERN SPECIES		ESRRB (ENSACAG00000017071) #34	ENSACAG00000017053 #32	GPATCH2L (ENSACAG00000017060) #33	ENSACAG00000036647	TGFB3 (ENSACAG00000017020) #31	ENSACAG00000016982 #29	ENSACAG00000044320	ERG28 (ENSACAG00000038620) #28	FLVCR2 (ENSACAG00000016955) #26	BATF (ENSACAG00000016951)	JDP2 (ENSACAG00000042584) #25	FOS (ENSACAG00000016921)	TMED10 (ENSACAG00000045345)	NEK9 (ENSACAG00000016850) #21	ZC2HC1C (ENSACAG00000016846)	ENSACAG00000016844 #22	MLH3 (ENSACAG00000016842) #23	EIF2B2 (ENSACAG00000016798)	PGF (ENSACAG00000016795)	RPS6KL1 (ENSACAG00000016769) #37	DLST (ENSACAG00000016718) #36	PROX2 (ENSACAG00000016714) #35	YLPM1 (ENSACAG00000016685)	FCF1 (ENSACAG00000037262)	AREL1 (ENSACAG00000016610)	LTBP2 (ENSACAG00000016494)	NPC2 (ENSACAG00000040505) #11	ENSACAG00000016482 #12	SYNDIG1L (ENSACAG00000016466)	VRTN (ENSACAG00000016464)	ABCD4 (ENSACAG00000016423)
tuatara	DUPLICATION
tuatara	MODERN SPECIES	603											FAM89B (ENSSPUG00000005823)	ENSSPUG00000005849	ENSSPUG00000005889	CCS (ENSSPUG00000005896)	RBM14 (ENSSPUG00000005905)	ENSSPUG00000005931 #22	ENSSPUG00000006224	RCE1 (ENSSPUG00000006231)
tuatara	DUPLICATION
tuatara	MODERN SPECIES	22							FREM3 (ENSSPUG00000007505)	SMARCA5 (ENSSPUG00000007604)	GAB1 (ENSSPUG00000007733)	USP38 (ENSSPUG00000007753)	ENSSPUG00000007768	ENSSPUG00000007773	INPP4B (ENSSPUG00000007792)	IL15 (ENSSPUG00000007841)	ZNF330 (ENSSPUG00000007853)	ENSSPUG00000007861 #22	RNF150 (ENSSPUG00000007877)	TBC1D9 (ENSSPUG00000007929)	ELMOD2 (ENSSPUG00000007981)	MGAT4D (ENSSPUG00000007992)	CLGN (ENSSPUG00000008019)	SCOC (ENSSPUG00000008058)	ENSSPUG00000008070	MGST2 (ENSSPUG00000008078)	SETD7 (ENSSPUG00000008084)	ENSSPUG00000008102	RAB33B (ENSSPUG00000008120)	NAA15 (ENSSPUG00000008128)	ELF2 (ENSSPUG00000008145)	NOCT (ENSSPUG00000008160)	SLC7A11 (ENSSPUG00000008169)
tuatara	MODERN SPECIES	522	VASH1 (ENSSPUG00000014181)	ESRRB (ENSSPUG00000014193) #34	GPATCH2L (ENSSPUG00000014207) #33	IFT43 (ENSSPUG00000014221) #32	TGFB3 (ENSSPUG00000014236) #31	ENSSPUG00000014249	ENSSPUG00000014265 #29	ERG28 (ENSSPUG00000014300) #28	FLVCR2 (ENSSPUG00000014311) #26	BATF (ENSSPUG00000014361)	JDP2 (ENSSPUG00000014368) #25	FOS (ENSSPUG00000014379)	TMED10 (ENSSPUG00000014389)	NEK9 (ENSSPUG00000014413) #21	ZC2HC1C (ENSSPUG00000014480)	ENSSPUG00000014488 #22	MLH3 (ENSSPUG00000014576) #23	EIF2B2 (ENSSPUG00000014804)	ENSSPUG00000014813	RPS6KL1 (ENSSPUG00000014833) #37	DLST (ENSSPUG00000014913) #36	ENSSPUG00000014927 ##35	ENSSPUG00000014971	ENSSPUG00000015096	FCF1 (ENSSPUG00000015109)	AREL1 (ENSSPUG00000015123)	LTBP2 (ENSSPUG00000015468)	NPC2 (ENSSPUG00000016951) #11	ISCA2 (ENSSPUG00000016966) #12	ABCD4 (ENSSPUG00000017009)	ENSSPUG00000017032
Archelosauria	ANCESTRAL SPECIES	2	ENSGT00390000012703.b	ENSGT00940000153433.A #34	ENSGT00410000025698.b #33	ENSGT00390000012060 #32	ENSGT00940000155747 #31	ENSGT00940000162939	ENSGT00940000162910 #29	ENSGT00390000010925 #28	ENSGT01030000234625.B.d #26	ENSGT00940000159745	ENSGT00940000155693 #25	ENSGT00940000159276	ENSGT00550000074954	ENSGT00940000156145 #21	ENSGT00940000160947	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815 #37	ENSGT00930000151014 #36	ENSGT00940000154790.b #35	ENSGT00440000039837	ENSGT00940000153117.B	ENSGT00940000156723	ENSGT00940000160884	ENSGT00390000006223 #11	ENSGT00390000005700 #12	ENSGT00950000183147.A.a	ENSGT00390000007874	ENSGT00950000182955.a.a.b
Archosauria	ANCESTRAL SPECIES	5	ENSGT00940000159057	ENSGT00390000012703.b	ENSGT00940000153433.A #34	ENSGT00410000025698.b #33	ENSGT00390000012060 #32	ENSGT00940000155747 #31	ENSGT00940000162910 #29	ENSGT00390000010925 #28	ENSGT01030000234625.B.d #26	ENSGT00940000159745	ENSGT00940000155693 #25	ENSGT00940000159276	ENSGT00550000074954	ENSGT00940000156145 #21	ENSGT00940000160947	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815 #37	ENSGT00930000151014 #36	ENSGT00940000154790.b #35	ENSGT00440000039837	ENSGT00940000153117.B	ENSGT00940000156723	ENSGT00940000160884	ENSGT00390000006223 #11	ENSGT00390000005700 #12	ENSGT00950000183147.A.a	ENSGT00390000007874	ENSGT00950000182955.a.a.b
Aves	ANCESTRAL SPECIES	2	ENSGT00940000159057	ENSGT00390000012703.b	ENSGT00940000153433.A #34	ENSGT00410000025698.b #33	ENSGT00390000012060 #32	ENSGT00940000155747 #31	ENSGT00940000162910 #29	ENSGT00390000010925 #28	ENSGT01030000234625.B.d #26	ENSGT00940000159745	ENSGT00940000155693 #25	ENSGT00940000159276	ENSGT00550000074954	ENSGT00940000156145 #21	ENSGT00940000160947	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815 #37	ENSGT00930000151014 #36	ENSGT00940000154790.b #35	ENSGT00440000039837	ENSGT00940000153117.B	ENSGT00940000156723	ENSGT00940000160884	ENSGT00390000006223 #11	ENSGT00390000005700 #12	ENSGT00950000183147.A.a	ENSGT00390000007874	ENSGT00950000182955.a.a.b
Neognathae	ANCESTRAL SPECIES	4	ENSGT00940000159057	ENSGT00390000012703.b	ENSGT00940000153433.A #34	ENSGT00410000025698.b #33	ENSGT00390000012060 #32	ENSGT00940000155747 #31	ENSGT00940000162910 #29	ENSGT00390000010925 #28	ENSGT01030000234625.B.d #26	ENSGT00940000159745	ENSGT00940000155693 #25	ENSGT00940000159276	ENSGT00550000074954	ENSGT00940000156145 #21	ENSGT00940000160947	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815 #37	ENSGT00930000151014 #36	ENSGT00940000154790.b #35	ENSGT00440000039837	ENSGT00940000153117.B	ENSGT00940000156723	ENSGT00940000160884	ENSGT00390000006223 #11	ENSGT00390000005700 #12	ENSGT00950000183147.A.a	ENSGT00390000007874	ENSGT00950000182955.a.a.b
Neognathae_b	ANCESTRAL SPECIES	6	ENSGT00940000159057	ENSGT00390000012703.b	ENSGT00940000153433.A #34	ENSGT00410000025698.b #33	ENSGT00390000012060 #32	ENSGT00940000155747 #31	ENSGT00940000162910 #29	ENSGT00390000010925 #28	ENSGT01030000234625.B.d.i #26	ENSGT00940000159745	ENSGT00940000155693 #25	ENSGT00940000159276	ENSGT00550000074954	ENSGT00940000156145 #21	ENSGT00940000160947	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815 #37	ENSGT00930000151014 #36	ENSGT00940000154790.b #35	ENSGT00440000039837	ENSGT00940000153117.B	ENSGT00940000156723	ENSGT00940000160884	ENSGT00390000006223 #11	ENSGT00390000005700 #12	ENSGT00950000183147.A.a	ENSGT00390000007874	ENSGT00950000182955.a.a.b
Passeriformes	ANCESTRAL SPECIES	5	ENSGT00390000012703.b	ENSGT00940000153433.A #34	ENSGT00410000025698.b #33	ENSGT00390000012060 #32	ENSGT00940000155747 #31	ENSGT00940000162910 #29	ENSGT00390000010925 #28	ENSGT01030000234625.B.d.i #26	ENSGT01030000234625.B.d.j #26	ENSGT00940000159745	ENSGT00940000155693 #25	ENSGT00940000159276	ENSGT00550000074954	ENSGT00940000156145 #21	ENSGT00940000160947	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815 #37	ENSGT00930000151014 #36	ENSGT00940000154790.b #35	ENSGT00440000039837	ENSGT00940000153117.B	ENSGT00940000156723	ENSGT00940000160884	ENSGT00390000006223 #11	ENSGT00390000005700 #12	ENSGT00950000183147.A.a	ENSGT00390000007874	ENSGT00950000182955.a.a.b
Passeriformes_d	ANCESTRAL SPECIES	5	ENSGT00390000012703.b	ENSGT00940000153433.A #34	ENSGT00410000025698.b #33	ENSGT00390000012060 #32	ENSGT00940000155747 #31	ENSGT00940000162910 #29	ENSGT00390000010925 #28	ENSGT01030000234625.B.d.i #26	ENSGT01030000234625.B.d.j #26	ENSGT00940000159745	ENSGT00940000155693 #25	ENSGT00940000159276	ENSGT00550000074954	ENSGT00940000156145 #21	ENSGT00940000160947	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815 #37	ENSGT00930000151014 #36	ENSGT00940000154790.b #35	ENSGT00440000039837	ENSGT00940000153117.B	ENSGT00940000156723	ENSGT00940000160884	ENSGT00390000006223 #11	ENSGT00390000005700 #12	ENSGT00950000183147.A.a	ENSGT00390000007874	ENSGT00950000182955.a.a.b
Passeriformes_g	ANCESTRAL SPECIES		ENSGT00390000012703.b	ENSGT00940000153433.A #34	ENSGT00410000025698.b #33	ENSGT00390000012060 #32	ENSGT00940000155747 #31	ENSGT00940000162910 #29	ENSGT00390000010925 #28	ENSGT01030000234625.B.d.i #26	ENSGT01030000234625.B.d.j #26	ENSGT00940000159745	ENSGT00940000155693 #25	ENSGT00940000159276	ENSGT00550000074954	ENSGT00940000156145 #21	ENSGT00940000160947	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815 #37	ENSGT00930000151014 #36	ENSGT00940000154790.b #35	ENSGT00440000039837	ENSGT00940000153117.B	ENSGT00940000156723	ENSGT00940000160884	ENSGT00390000006223 #11	ENSGT00390000005700 #12	ENSGT00950000183147.A.a	ENSGT00390000007874	ENSGT00950000182955.a.a.b
Passeroidea	ANCESTRAL SPECIES	1	ENSGT00390000012703.b	ENSGT00940000153433.A #34	ENSGT00410000025698.b #33	ENSGT00390000012060 #32	ENSGT00940000155747 #31	ENSGT00940000162910 #29	ENSGT00390000010925 #28	ENSGT01030000234625.B.d.i #26	ENSGT01030000234625.B.d.j #26	ENSGT00940000159745	ENSGT00940000155693 #25	ENSGT00940000159276	ENSGT00550000074954	ENSGT00940000156145 #21	ENSGT00940000160947	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815 #37	ENSGT00930000151014 #36	ENSGT00940000154790.b #35	ENSGT00440000039837	ENSGT00940000153117.B	ENSGT00940000156723	ENSGT00940000160884	ENSGT00390000006223 #11	ENSGT00390000005700 #12	ENSGT00950000183147.A.a	ENSGT00390000007874	ENSGT00950000182955.a.a.b
Common canary	MODERN SPECIES	3	ANGEL1 (ENSSCAG00000009538)	VASH1 (ENSSCAG00000009556)	ESRRB (ENSSCAG00000009585) #34	GPATCH2L (ENSSCAG00000009600) #33	IFT43 (ENSSCAG00000009609) #32	TGFB3 (ENSSCAG00000009618) #31	ENSSCAG00000009627 #29	ERG28 (ENSSCAG00000009658) #28	FLVCR2 (ENSSCAG00000009666) #26	BATF (ENSSCAG00000009693)	JDP2 (ENSSCAG00000009696) #25	FOS (ENSSCAG00000009700)	TMED10 (ENSSCAG00000009702)	NEK9 (ENSSCAG00000009723) #21	ENSSCAG00000009797	ENSSCAG00000009801 #22	MLH3 (ENSSCAG00000009812) #23	EIF2B2 (ENSSCAG00000009821)	PGF (ENSSCAG00000009832)	RPS6KL1 (ENSSCAG00000009834) #37	DLST (ENSSCAG00000009837) #36	PROX2 (ENSSCAG00000009845) #35	YLPM1 (ENSSCAG00000009864)	FCF1 (ENSSCAG00000009987)	AREL1 (ENSSCAG00000009993)	LTBP2 (ENSSCAG00000010015)	NPC2 (ENSSCAG00000010103) #11	ISCA2 (ENSSCAG00000010111) #12	SYNDIG1L (ENSSCAG00000010118)	VRTN (ENSSCAG00000010157)	ABCD4 (ENSSCAG00000010160)
Zebra finch	MODERN SPECIES	27	CIPC (ENSTGUG00000012273)	VASH1 (ENSTGUG00000023437)	ANGEL1 (ENSTGUG00000012264)	GPATCH2L (ENSTGUG00000012250) #33	IFT43 (ENSTGUG00000012246) #32	TGFB3 (ENSTGUG00000019296) #31	ENSTGUG00000012226 #29	ERG28 (ENSTGUG00000020427) #28	ENSTGUG00000024811 #26	ENSTGUG00000012221 #26	BATF (ENSTGUG00000028382)	FOS (ENSTGUG00000012217)	TMED10 (ENSTGUG00000028035)	NEK9 (ENSTGUG00000012213) #21	ENSTGUG00000020837	ACYP1 (ENSTGUG00000012209) #22	MLH3 (ENSTGUG00000012203) #23	EIF2B2 (ENSTGUG00000012191)	PGF (ENSTGUG00000019217)	RPS6KL1 (ENSTGUG00000012186) #37	DLST (ENSTGUG00000012171) #36	PROX2 (ENSTGUG00000012170) #35	YLPM1 (ENSTGUG00000012165)	FCF1 (ENSTGUG00000020479)	AREL1 (ENSTGUG00000012150)	LTBP2 (ENSTGUG00000012131)	NPC2 (ENSTGUG00000016271) #11	ISCA2 (ENSTGUG00000016281) #12	SYNDIG1L (ENSTGUG00000022036)	VRTN (ENSTGUG00000012125)	ABCD4 (ENSTGUG00000012116)
Medium ground finch	MODERN SPECIES	4	CIPC (ENSGFOG00000001578)	ANGEL1 (ENSGFOG00000001583)	VASH1 (ENSGFOG00000001589)	ESRRB (ENSGFOG00000001598) #34	GPATCH2L (ENSGFOG00000001611) #33	IFT43 (ENSGFOG00000001630) #32	TGFB3 (ENSGFOG00000001638) #31	ENSGFOG00000001672 #29	ERG28 (ENSGFOG00000001835) #28	FLVCR2 (ENSGFOG00000001853) #26	BATF (ENSGFOG00000002062)	JDP2 (ENSGFOG00000002072) #25	TMED10 (ENSGFOG00000002078)	NEK9 (ENSGFOG00000002105) #21	ZC2HC1C (ENSGFOG00000002249)	ENSGFOG00000002259 #22	MLH3 (ENSGFOG00000002274) #23	EIF2B2 (ENSGFOG00000002313)	PGF (ENSGFOG00000002365)	RPS6KL1 (ENSGFOG00000002379) #37	DLST (ENSGFOG00000002394) #36	PROX2 (ENSGFOG00000002426) #35	YLPM1 (ENSGFOG00000002443)	FCF1 (ENSGFOG00000002486)	AREL1 (ENSGFOG00000002509)	NPC2 (ENSGFOG00000002662) #11	ISCA2 (ENSGFOG00000002678) #12	SYNDIG1L (ENSGFOG00000002688)	VRTN (ENSGFOG00000002699)	ABCD4 (ENSGFOG00000002710)	ENSGFOG00000002748
Flycatcher	MODERN SPECIES	24	ANGEL1 (ENSFALG00000006446)	VASH1 (ENSFALG00000006440)	ESRRB (ENSFALG00000028386) #34	GPATCH2L (ENSFALG00000006421) #33	IFT43 (ENSFALG00000006417) #32	TGFB3 (ENSFALG00000006413) #31	ENSFALG00000006387 #29	ERG28 (ENSFALG00000006377) #28	FLVCR2 (ENSFALG00000023021) #26	BATF (ENSFALG00000025671)	JDP2 (ENSFALG00000006358) #25	FOS (ENSFALG00000024693)	TMED10 (ENSFALG00000025099)	NEK9 (ENSFALG00000006350) #21	ENSFALG00000006348	ENSFALG00000006347 #22	MLH3 (ENSFALG00000006344) #23	EIF2B2 (ENSFALG00000006338)	PGF (ENSFALG00000028486)	RPS6KL1 (ENSFALG00000006331) #37	DLST (ENSFALG00000006316) #36	PROX2 (ENSFALG00000006312) #35	YLPM1 (ENSFALG00000006304)	FCF1 (ENSFALG00000006301)	AREL1 (ENSFALG00000006298)	ENSFALG00000026806	LTBP2 (ENSFALG00000006295)	ENSFALG00000006290 #11	ENSFALG00000028034 #12	SYNDIG1L (ENSFALG00000006284)	VRTN (ENSFALG00000015230)
Great tit	MODERN SPECIES	25	VASH1 (ENSPMJG00000016833)	ESRRB (ENSPMJG00000016832) #34	GPATCH2L (ENSPMJG00000016831) #33	IFT43 (ENSPMJG00000016830) #32	TGFB3 (ENSPMJG00000016829) #31	ENSPMJG00000016828 #29	ERG28 (ENSPMJG00000016827) #28	ENSPMJG00000016826 #26	ENSPMJG00000016825 #26	BATF (ENSPMJG00000016824)	JDP2 (ENSPMJG00000016823) #25	FOS (ENSPMJG00000016821)	TMED10 (ENSPMJG00000016820)	NEK9 (ENSPMJG00000016739) #21	ENSPMJG00000016735	ENSPMJG00000016734 #22	MLH3 (ENSPMJG00000016733) #23	EIF2B2 (ENSPMJG00000016732)	PGF (ENSPMJG00000016731)	RPS6KL1 (ENSPMJG00000016730) #37	DLST (ENSPMJG00000016729) #36	PROX2 (ENSPMJG00000016728) #35	ENSPMJG00000016727	YLPM1 (ENSPMJG00000016705)	FCF1 (ENSPMJG00000016704)	AREL1 (ENSPMJG00000016703)	LTBP2 (ENSPMJG00000016702)	NPC2 (ENSPMJG00000016701) #11	ISCA2 (ENSPMJG00000016700) #12	SYNDIG1L (ENSPMJG00000016699)	VRTN (ENSPMJG00000016698)
Neognathae_c	ANCESTRAL SPECIES	6	ENSGT00940000159057	ENSGT00390000012703.b	ENSGT00940000153433.A #34	ENSGT00410000025698.b #33	ENSGT00390000012060 #32	ENSGT00940000155747 #31	ENSGT00940000162910 #29	ENSGT00390000010925 #28	ENSGT01030000234625.B.d.i #26	ENSGT00940000159745	ENSGT00940000155693 #25	ENSGT00940000159276	ENSGT00550000074954	ENSGT00940000156145 #21	ENSGT00940000160947	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815 #37	ENSGT00930000151014 #36	ENSGT00940000154790.b #35	ENSGT00440000039837	ENSGT00940000153117.B	ENSGT00940000156723	ENSGT00940000160884	ENSGT00390000006223 #11	ENSGT00390000005700 #12	ENSGT00950000183147.A.a	ENSGT00390000007874	ENSGT00950000182955.a.a.b
Golden eagle	MODERN SPECIES	11	ANGEL1 (ENSACCG00020001491)	VASH1 (ENSACCG00020001532)	ESRRB (ENSACCG00020001553) #34	GPATCH2L (ENSACCG00020001576) #33	IFT43 (ENSACCG00020001611) #32	TGFB3 (ENSACCG00020001694) #31	ENSACCG00020001819 #29	ERG28 (ENSACCG00020001961) #28	FLVCR2 (ENSACCG00020001984) #26	BATF (ENSACCG00020002009)	JDP2 (ENSACCG00020002026) #25	FOS (ENSACCG00020002039)	TMED10 (ENSACCG00020002055)	NEK9 (ENSACCG00020002085) #21	ZC2HC1C (ENSACCG00020002116)	ENSACCG00020002134 #22	MLH3 (ENSACCG00020002145) #23	EIF2B2 (ENSACCG00020002164)	PGF (ENSACCG00020002218)	RPS6KL1 (ENSACCG00020002260) #37	DLST (ENSACCG00020002299) #36	PROX2 (ENSACCG00020002325) #35	YLPM1 (ENSACCG00020002356)	FCF1 (ENSACCG00020002385)	AREL1 (ENSACCG00020002407)	LTBP2 (ENSACCG00020002582)	NPC2 (ENSACCG00020002688) #11	ISCA2 (ENSACCG00020002695) #12	SYNDIG1L (ENSACCG00020002699)	VRTN (ENSACCG00020002717)	ABCD4 (ENSACCG00020002740)
Kakapo	MODERN SPECIES	21	VASH1 (ENSSHBG00005004459)	ESRRB (ENSSHBG00005004464) #34	GPATCH2L (ENSSHBG00005004480) #33	IFT43 (ENSSHBG00005004484) #32	TGFB3 (ENSSHBG00005000556) #31	ENSSHBG00005001427 #29	ERG28 (ENSSHBG00005001459) #28	FLVCR2 (ENSSHBG00005001491) #26	BATF (ENSSHBG00005001532)	JDP2 (ENSSHBG00005001554) #25	FOS (ENSSHBG00005001582)	TMED10 (ENSSHBG00005001619)	NEK9 (ENSSHBG00005001722) #21	ZC2HC1C (ENSSHBG00005001804)	MLH3 (ENSSHBG00005001837) #23	ENSSHBG00005001871 #22	EIF2B2 (ENSSHBG00005001888)	PGF (ENSSHBG00005001915)	RPS6KL1 (ENSSHBG00005001934) #37	DLST (ENSSHBG00005001954) #36	PROX2 (ENSSHBG00005001976) #35	ENSSHBG00005001994	ENSSHBG00005002015	FCF1 (ENSSHBG00005002041)	AREL1 (ENSSHBG00005002081)	ENSSHBG00005002127	NPC2 (ENSSHBG00005002154) #11	ISCA2 (ENSSHBG00005002165) #12	SYNDIG1L (ENSSHBG00005002175)	VRTN (ENSSHBG00005002185)	ABCD4 (ENSSHBG00005002203)
Galloanserae	ANCESTRAL SPECIES	4	ENSGT00940000159057	ENSGT00390000012703.b	ENSGT00940000153433.A #34	ENSGT00410000025698.b #33	ENSGT00390000012060 #32	ENSGT00940000155747 #31	ENSGT00940000162910 #29	ENSGT00390000010925 #28	ENSGT01030000234625.B.d #26	ENSGT00940000159745	ENSGT00940000155693 #25	ENSGT00940000159276	ENSGT00550000074954	ENSGT00940000156145 #21	ENSGT00940000160947	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815 #37	ENSGT00930000151014 #36	ENSGT00940000154790.b #35	ENSGT00440000039837	ENSGT00940000153117.B	ENSGT00940000156723	ENSGT00940000160884	ENSGT00390000006223 #11	ENSGT00390000005700 #12	ENSGT00950000183147.A.a	ENSGT00390000007874	ENSGT00950000182955.a.a.b
Anatidae	ANCESTRAL SPECIES	9	ENSGT00940000159057	ENSGT00390000012703.b	ENSGT00940000153433.A #34	ENSGT00410000025698.b #33	ENSGT00390000012060 #32	ENSGT00940000155747 #31	ENSGT00940000162910 #29	ENSGT00390000010925 #28	ENSGT01030000234625.B.d #26	ENSGT00940000159745	ENSGT00940000155693 #25	ENSGT00940000159276	ENSGT00550000074954	ENSGT00940000156145 #21	ENSGT00940000160947	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815 #37	ENSGT00930000151014 #36	ENSGT00940000154790.b #35	ENSGT00440000039837	ENSGT00940000153117.B	ENSGT00940000156723	ENSGT00940000160884	ENSGT00390000006223 #11	ENSGT00390000005700 #12	ENSGT00950000183147.A.a	ENSGT00390000007874	ENSGT00950000182955.a.a.b
Pink-footed goose	MODERN SPECIES	23	ANGEL1 (ENSABRG00000002246)	VASH1 (ENSABRG00000002267)	ESRRB (ENSABRG00000002310) #34	GPATCH2L (ENSABRG00000002331) #33	IFT43 (ENSABRG00000002376) #32	TGFB3 (ENSABRG00000002408) #31	ENSABRG00000002595 #29	ERG28 (ENSABRG00000003925) #28	FLVCR2 (ENSABRG00000004069) #26	BATF (ENSABRG00000005195)	JDP2 (ENSABRG00000005200) #25	FOS (ENSABRG00000005204)	TMED10 (ENSABRG00000005211)	NEK9 (ENSABRG00000005273) #21	ZC2HC1C (ENSABRG00000005789)	ENSABRG00000005837 #22	MLH3 (ENSABRG00000005858) #23	EIF2B2 (ENSABRG00000005958)	PGF (ENSABRG00000006020)	RPS6KL1 (ENSABRG00000006027) #37	DLST (ENSABRG00000006045) #36	PROX2 (ENSABRG00000006090) #35	YLPM1 (ENSABRG00000006121)	FCF1 (ENSABRG00000006245)	AREL1 (ENSABRG00000006312)	LTBP2 (ENSABRG00000006674)	NPC2 (ENSABRG00000007540) #11	ISCA2 (ENSABRG00000007546) #12	SYNDIG1L (ENSABRG00000007553)	VRTN (ENSABRG00000007556)	ABCD4 (ENSABRG00000007564)
Duck	MODERN SPECIES	1225																ENSAPLG00000025865 #22
Phasianidae	ANCESTRAL SPECIES	4	ENSGT00940000159057	ENSGT00390000012703.b	ENSGT00940000153433.A #34	ENSGT00410000025698.b #33	ENSGT00390000012060 #32	ENSGT00940000155747 #31	ENSGT00940000162910 #29	ENSGT00390000010925 #28	ENSGT01030000234625.B.d #26	ENSGT00940000159745	ENSGT00940000155693 #25	ENSGT00940000159276	ENSGT00550000074954	ENSGT00940000156145 #21	ENSGT00940000160947	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815 #37	ENSGT00930000151014 #36	ENSGT00940000154790.b #35	ENSGT00440000039837	ENSGT00940000153117.B	ENSGT00940000156723	ENSGT00940000160884	ENSGT00390000006223 #11	ENSGT00390000005700 #12	ENSGT00950000183147.A.a	ENSGT00390000007874	ENSGT00950000182955.a.a.b
Phasianidae_b	ANCESTRAL SPECIES	3	ENSGT00940000159057	ENSGT00390000012703.b	ENSGT00940000153433.A #34	ENSGT00410000025698.b #33	ENSGT00390000012060 #32	ENSGT00940000155747 #31	ENSGT00940000162910 #29	ENSGT00390000010925 #28	ENSGT01030000234625.B.d #26	ENSGT00940000159745	ENSGT00940000155693 #25	ENSGT00940000159276	ENSGT00550000074954	ENSGT00940000156145 #21	ENSGT00940000160947	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815 #37	ENSGT00930000151014 #36	ENSGT00940000154790.b #35	ENSGT00440000039837	ENSGT00940000153117.B	ENSGT00940000156723	ENSGT00940000160884	ENSGT00390000006223 #11	ENSGT00390000005700 #12	ENSGT00950000183147.A.a	ENSGT00390000007874	ENSGT00950000182955.a.a.b
Turkey	MODERN SPECIES	25	ANGEL1 (ENSMGAG00000012816)	VASH1 (ENSMGAG00000012810)	ENSMGAG00000012874 #7	ESRRB (ENSMGAG00000012804) #34	GPATCH2L (ENSMGAG00000012794) #33	IFT43 (ENSMGAG00000012792) #32	ENSMGAG00000012783 #31	ENSMGAG00000012764 #29	ERG28 (ENSMGAG00000012763) #28	FLVCR2 (ENSMGAG00000012760) #26	BATF (ENSMGAG00000012758)	JDP2 (ENSMGAG00000012755) #25	TMED10 (ENSMGAG00000012754)	NEK9 (ENSMGAG00000012746) #21	ZC2HC1C (ENSMGAG00000012742)	ENSMGAG00000012741 #22	MLH3 (ENSMGAG00000012735) #23	EIF2B2 (ENSMGAG00000012733)	ENSMGAG00000021471	RPS6KL1 (ENSMGAG00000012729) #37	DLST (ENSMGAG00000012717) #36	PROX2 (ENSMGAG00000012715) #35	YLPM1 (ENSMGAG00000012707)	FCF1 (ENSMGAG00000012704)	AREL1 (ENSMGAG00000012699)	LTBP2 (ENSMGAG00000012684)	ENSMGAG00000012679 #11	ENSMGAG00000012674 #12	SYNDIG1L (ENSMGAG00000012668)	VRTN (ENSMGAG00000012667)	ABCD4 (ENSMGAG00000012657)
Chicken	MODERN SPECIES	34	ANGEL1 (ENSGALG00010005220)	VASH1 (ENSGALG00010005215)	ESRRB (ENSGALG00010005211) #34	GPATCH2L (ENSGALG00010005170) #33	IFT43 (ENSGALG00010005158) #32	TGFB3 (ENSGALG00010005146) #31	TTLL5 (ENSGALG00010005107) #29	C5H14orf1 (ENSGALG00010005077) #28	FLVCR2 (ENSGALG00010005057) #26	BATF (ENSGALG00010004553)	JDP2 (ENSGALG00010004473) #25	FOS (ENSGALG00010006212)	TMED10 (ENSGALG00010006188)	NEK9 (ENSGALG00010006177) #21	ZC2HC1C (ENSGALG00010006135)	ACYP1 (ENSGALG00010006128) #22	MLH3 (ENSGALG00010006123) #23	EIF2B2 (ENSGALG00010006113)	PGF (ENSGALG00010006107)	RPS6KL1 (ENSGALG00010006100) #37	DLST (ENSGALG00010006085) #36	PROX2 (ENSGALG00010005943) #35	YLPM1 (ENSGALG00010005998)	FCF1 (ENSGALG00010005989)	AREL1 (ENSGALG00010005981)	LTBP2 (ENSGALG00010004325)	NPC2 (ENSGALG00010004307) #11	ISCA2 (ENSGALG00010004380) #12	SYNDIG1L (ENSGALG00010006328)	VRTN (ENSGALG00010006280)	ABCD4 (ENSGALG00010006311)
Japanese quail	MODERN SPECIES	23	ANGEL1 (ENSCJPG00005019270)	VASH1 (ENSCJPG00005019269)	ESRRB (ENSCJPG00005019268) #34	GPATCH2L (ENSCJPG00005019267) #33	IFT43 (ENSCJPG00005019266) #32	TGFB3 (ENSCJPG00005019265) #31	ENSCJPG00005019256 #29	ERG28 (ENSCJPG00005019254) #28	FLVCR2 (ENSCJPG00005019253) #26	BATF (ENSCJPG00005019252)	JDP2 (ENSCJPG00005019251) #25	FOS (ENSCJPG00005019250)	TMED10 (ENSCJPG00005019249)	NEK9 (ENSCJPG00005019248) #21	ZC2HC1C (ENSCJPG00005019247)	ENSCJPG00005019246 #22	MLH3 (ENSCJPG00005019245) #23	EIF2B2 (ENSCJPG00005019244)	PGF (ENSCJPG00005019243)	RPS6KL1 (ENSCJPG00005019242) #37	DLST (ENSCJPG00005019241) #36	PROX2 (ENSCJPG00005019240) #35	YLPM1 (ENSCJPG00005019228)	FCF1 (ENSCJPG00005019226)	AREL1 (ENSCJPG00005019225)	LTBP2 (ENSCJPG00005019223)	NPC2 (ENSCJPG00005019222) #11	ISCA2 (ENSCJPG00005019221) #12	SYNDIG1L (ENSCJPG00005019220)	VRTN (ENSCJPG00005019218)	ABCD4 (ENSCJPG00005019217)
African ostrich	MODERN SPECIES	477												JDP2 (ENSSCUG00000005270) #25	TMED10 (ENSSCUG00000005272)	NEK9 (ENSSCUG00000005285) #21	ZC2HC1C (ENSSCUG00000005307)	ENSSCUG00000005308 #22	MLH3 (ENSSCUG00000005309) #23	EIF2B2 (ENSSCUG00000005313)	PGF (ENSSCUG00000005314)	RPS6KL1 (ENSSCUG00000005315) #37	DLST (ENSSCUG00000005316) #36	PROX2 (ENSSCUG00000005317) #35	YLPM1 (ENSSCUG00000005318)	FCF1 (ENSSCUG00000005319)	AREL1 (ENSSCUG00000005320)	LTBP2 (ENSSCUG00000005321)	NPC2 (ENSSCUG00000005322) #11	ENSSCUG00000005324	SYNDIG1L (ENSSCUG00000005325)	VRTN (ENSSCUG00000005326)	ABCD4 (ENSSCUG00000005327)
Australian saltwater crocodile	MODERN SPECIES	64	ENSCPRG00005005259	VASH1 (ENSCPRG00005005257)	ESRRB (ENSCPRG00005005204) #34	GPATCH2L (ENSCPRG00005005177) #33	IFT43 (ENSCPRG00005005170) #32	TGFB3 (ENSCPRG00005005133) #31	ENSCPRG00005005097 #29	ERG28 (ENSCPRG00005005083) #28	FLVCR2 (ENSCPRG00005005058) #26	BATF (ENSCPRG00005005043)	JDP2 (ENSCPRG00005005039) #25	FOS (ENSCPRG00005005033)	TMED10 (ENSCPRG00005005026)	NEK9 (ENSCPRG00005005015) #21	ZC2HC1C (ENSCPRG00005004999)	ENSCPRG00005004949 #22	MLH3 (ENSCPRG00005004921) #23	EIF2B2 (ENSCPRG00005004792)	PGF (ENSCPRG00005004776)	RPS6KL1 (ENSCPRG00005004756) #37	DLST (ENSCPRG00005004713) #36	PROX2 (ENSCPRG00005004701) #35	ENSCPRG00005004699	FCF1 (ENSCPRG00005004669)	AREL1 (ENSCPRG00005004372)	LTBP2 (ENSCPRG00005004192)	NPC2 (ENSCPRG00005004174) #11	ENSCPRG00005004172	SYNDIG1L (ENSCPRG00005004169)	VRTN (ENSCPRG00005004144)	ABCD4 (ENSCPRG00005004118)
Cryptodira	ANCESTRAL SPECIES	3	ENSGT00390000012703.b	ENSGT00940000153433.A #34	ENSGT00410000025698.b #33	ENSGT00390000012060 #32	ENSGT00940000155747 #31	ENSGT00940000162939	ENSGT00940000162910 #29	ENSGT00390000010925 #28	ENSGT01030000234625.B.d #26	ENSGT00940000159745	ENSGT00940000155693 #25	ENSGT00940000159276	ENSGT00550000074954	ENSGT00940000156145 #21	ENSGT00940000160947	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815 #37	ENSGT00930000151014 #36	ENSGT00940000154790.b #35	ENSGT00440000039837	ENSGT00940000153117.B	ENSGT00940000156723	ENSGT00940000160884	ENSGT00390000006223 #11	ENSGT00390000005700 #12	ENSGT00950000183147.A.a	ENSGT00390000007874	ENSGT00950000182955.a.a.b
Chinese turtle	DUPLICATION
Chinese turtle	MODERN SPECIES	1726															ENSPSIG00000003402	ENSPSIG00000003408 #22	ENSPSIG00000001894	SPTBN2 (ENSPSIG00000003412)	ENSPSIG00000003430	RBM14 (ENSPSIG00000003436)	CCS (ENSPSIG00000003456)	CCDC87 (ENSPSIG00000003469)	ENSPSIG00000003473	ENSPSIG00000003477	ENSPSIG00000003479	FAM89B (ENSPSIG00000003483)	EHBP1L1 (ENSPSIG00000003489)	ENSPSIG00000003525	SIPA1 (ENSPSIG00000003531)	PCNX3 (ENSPSIG00000003563)	MAP3K11 (ENSPSIG00000003575)
Chinese turtle	MODERN SPECIES	666	ANGEL1 (ENSPSIG00000018028)	VASH1 (ENSPSIG00000018009)	ESRRB (ENSPSIG00000017916) #34	GPATCH2L (ENSPSIG00000017892) #33	IFT43 (ENSPSIG00000017883) #32	TGFB3 (ENSPSIG00000017861) #31	ENSPSIG00000017794 #29	ERG28 (ENSPSIG00000017766) #28	FLVCR2 (ENSPSIG00000017663) #26	BATF (ENSPSIG00000017659)	JDP2 (ENSPSIG00000017647) #25	FOS (ENSPSIG00000017598)	TMED10 (ENSPSIG00000017584)	NEK9 (ENSPSIG00000017508) #21	ZC2HC1C (ENSPSIG00000017503)	ENSPSIG00000017500 #22	MLH3 (ENSPSIG00000017451) #23	EIF2B2 (ENSPSIG00000017425)	PGF (ENSPSIG00000017412)	RPS6KL1 (ENSPSIG00000017157) #37	DLST (ENSPSIG00000017022) #36	PROX2 (ENSPSIG00000017015) #35	YLPM1 (ENSPSIG00000016931)	FCF1 (ENSPSIG00000016906)	AREL1 (ENSPSIG00000016885)	LTBP2 (ENSPSIG00000016524)	NPC2 (ENSPSIG00000016428) #11	ISCA2 (ENSPSIG00000016409) #12	SYNDIG1L (ENSPSIG00000016403)	VRTN (ENSPSIG00000000381)	ABCD4 (ENSPSIG00000016190)
Testudinoidea	ANCESTRAL SPECIES	3	ENSGT00390000012703.b	ENSGT00940000153433.A #34	ENSGT00410000025698.b #33	ENSGT00390000012060 #32	ENSGT00940000155747 #31	ENSGT00940000162939	ENSGT00940000162910 #29	ENSGT00390000010925 #28	ENSGT01030000234625.B.d #26	ENSGT00940000159745	ENSGT00940000155693 #25	ENSGT00940000159276	ENSGT00550000074954	ENSGT00940000156145 #21	ENSGT00940000160947	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815 #37	ENSGT00930000151014 #36	ENSGT00940000154790.b #35	ENSGT00440000039837	ENSGT00940000153117.B	ENSGT00940000156723	ENSGT00940000160884	ENSGT00390000006223 #11	ENSGT00390000005700 #12	ENSGT00950000183147.A.a	ENSGT00390000007874	ENSGT00950000182955.a.a.b
Emydidae	ANCESTRAL SPECIES	2	ENSGT00390000012703.b	ENSGT00940000153433.A #34	ENSGT00410000025698.b #33	ENSGT00390000012060 #32	ENSGT00940000155747 #31	ENSGT00900000143573	ENSGT00940000162910 #29	ENSGT00390000010925 #28	ENSGT01030000234625.B.d #26	ENSGT00940000159745	ENSGT00940000155693 #25	ENSGT00940000159276	ENSGT00550000074954	ENSGT00940000156145 #21	ENSGT00940000160947	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815 #37	ENSGT00930000151014 #36	ENSGT00940000154790.b #35	ENSGT00440000039837	ENSGT00940000153117.B	ENSGT00940000156723	ENSGT00940000160884	ENSGT00390000006223 #11	ENSGT00390000005700 #12	ENSGT00950000183147.A.a	ENSGT00390000007874	ENSGT00950000182955.a.a.b
Three-toed box turtle	DUPLICATION
Three-toed box turtle	MODERN SPECIES	33	B3GAT3 (ENSTMTG00000012733)	EML3 (ENSTMTG00000007398)	MTA2 (ENSTMTG00000007011)	ENSTMTG00000006998	TUT1 (ENSTMTG00000006969)	TAF6L (ENSTMTG00000006942)	TMEM179B (ENSTMTG00000006929)	WDR74 (ENSTMTG00000006826)	STX5 (ENSTMTG00000006786)	ENSTMTG00000006770	TMEM223 (ENSTMTG00000006763)	ENSTMTG00000006630	ENSTMTG00000006605	ACTN3 (ENSTMTG00000006372)	ENSTMTG00000006326	ENSTMTG00000006319 #22	SPTBN2 (ENSTMTG00000006232)	RBM14 (ENSTMTG00000006209)	CCS (ENSTMTG00000006177)	ENSTMTG00000006168	ENSTMTG00000006132	ENSTMTG00000006110	ZNRD2 (ENSTMTG00000006101)	ENSTMTG00000006089	EHBP1L1 (ENSTMTG00000005971)	ENSTMTG00000005861	SIPA1 (ENSTMTG00000005815)	PCNX3 (ENSTMTG00000003486)	ENSTMTG00000003316	ENSTMTG00000003302	LTBP3 (ENSTMTG00000003225)
Three-toed box turtle	MODERN SPECIES	40	ANGEL1 (ENSTMTG00000016822)	VASH1 (ENSTMTG00000016803)	ESRRB (ENSTMTG00000016774) #34	GPATCH2L (ENSTMTG00000016753) #33	IFT43 (ENSTMTG00000016727) #32	TGFB3 (ENSTMTG00000016700) #31	ENSTMTG00000014814 #29	ERG28 (ENSTMTG00000014676) #28	FLVCR2 (ENSTMTG00000014652) #26	BATF (ENSTMTG00000014636)	JDP2 (ENSTMTG00000014629) #25	FOS (ENSTMTG00000014616)	TMED10 (ENSTMTG00000014603)	NEK9 (ENSTMTG00000014568) #21	ZC2HC1C (ENSTMTG00000014553)	ENSTMTG00000014544 #22	MLH3 (ENSTMTG00000014498) #23	EIF2B2 (ENSTMTG00000014462)	PGF (ENSTMTG00000014442)	RPS6KL1 (ENSTMTG00000014348) #37	DLST (ENSTMTG00000014310) #36	PROX2 (ENSTMTG00000014292) #35	YLPM1 (ENSTMTG00000014275)	FCF1 (ENSTMTG00000014262)	AREL1 (ENSTMTG00000012332)	LTBP2 (ENSTMTG00000011882)	NPC2 (ENSTMTG00000011846) #11	ISCA2 (ENSTMTG00000011837) #12	ENSTMTG00000011818	ENSTMTG00000011800	SYNDIG1L (ENSTMTG00000011761)
painted turtle	DUPLICATION
painted turtle	MODERN SPECIES	2386								WDR74 (ENSCPBG00000023840)	STX5 (ENSCPBG00000023838)	ENSCPBG00000023836	TMEM223 (ENSCPBG00000023834)	ENSCPBG00000023833	ENSCPBG00000023830	ACTN3 (ENSCPBG00000023827)	RCE1 (ENSCPBG00000023817)	ENSCPBG00000023813 #22	SPTBN2 (ENSCPBG00000023810)	RBM14 (ENSCPBG00000023808)	CCS (ENSCPBG00000023807)	ENSCPBG00000023806	ENSCPBG00000023804	ENSCPBG00000023800	ENSCPBG00000023797	ENSCPBG00000023796	ZNRD2 (ENSCPBG00000023795)	FAM89B (ENSCPBG00000023794)	EHBP1L1 (ENSCPBG00000023783)	ENSCPBG00000023780	SIPA1 (ENSCPBG00000023770)	PCNX3 (ENSCPBG00000023769)	MAP3K11 (ENSCPBG00000023768)
painted turtle	MODERN SPECIES	13	VASH1 (ENSCPBG00000026276)	ESRRB (ENSCPBG00000026275) #34	ENSCPBG00000026271	IFT43 (ENSCPBG00000026270) #32	TGFB3 (ENSCPBG00000026269) #31	ENSCPBG00000026268	ENSCPBG00000026263 #29	ERG28 (ENSCPBG00000026257) #28	FLVCR2 (ENSCPBG00000026254) #26	BATF (ENSCPBG00000026252)	JDP2 (ENSCPBG00000026250) #25	FOS (ENSCPBG00000026248)	TMED10 (ENSCPBG00000026244)	NEK9 (ENSCPBG00000026242) #21	ZC2HC1C (ENSCPBG00000026241)	ENSCPBG00000026240 #22	MLH3 (ENSCPBG00000026238) #23	EIF2B2 (ENSCPBG00000026237)	PGF (ENSCPBG00000026236)	RPS6KL1 (ENSCPBG00000026235) #37	DLST (ENSCPBG00000026234) #36	PROX2 (ENSCPBG00000026233) #35	YLPM1 (ENSCPBG00000026232)	FCF1 (ENSCPBG00000026231)	AREL1 (ENSCPBG00000026230)	LTBP2 (ENSCPBG00000026229)	NPC2 (ENSCPBG00000026228) #11	ISCA2 (ENSCPBG00000026227) #12	SYNDIG1L (ENSCPBG00000026226)	VRTN (ENSCPBG00000026225)	ABCD4 (ENSCPBG00000026224)
Testudinidae	ANCESTRAL SPECIES	2	ENSGT00390000012703.b	ENSGT00940000153433.A #34	ENSGT00410000025698.b #33	ENSGT00390000012060 #32	ENSGT00940000155747 #31	ENSGT00940000162939	ENSGT00940000162910 #29	ENSGT00390000010925 #28	ENSGT01030000234625.B.d #26	ENSGT00940000159745	ENSGT00940000155693 #25	ENSGT00940000159276	ENSGT00550000074954	ENSGT00940000156145 #21	ENSGT00940000160947	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00550000074908	ENSGT00940000160164	ENSGT00940000159815 #37	ENSGT00930000151014 #36	ENSGT00940000154790.b #35	ENSGT00440000039837	ENSGT00940000153117.B	ENSGT00940000156723	ENSGT00940000160884	ENSGT00390000006223 #11	ENSGT00390000005700 #12	ENSGT00950000183147.A.a	ENSGT00390000007874	ENSGT00950000182955.a.a.b
Goode s thornscrub tortoise	DUPLICATION
Goode s thornscrub tortoise	MODERN SPECIES	21	MTA2 (ENSGEVG00005007814)	ENSGEVG00005007847	TUT1 (ENSGEVG00005007871)	TAF6L (ENSGEVG00005007893)	TMEM179B (ENSGEVG00005007930)	WDR74 (ENSGEVG00005008071)	STX5 (ENSGEVG00005008105)	ENSGEVG00005008133	TMEM223 (ENSGEVG00005008204)	ENSGEVG00005008282	ENSGEVG00005008690	ENSGEVG00005008739	ACTN3 (ENSGEVG00005008754)	ENSGEVG00005008794	ENSGEVG00005008820	ENSGEVG00005008920 #22	SPTBN2 (ENSGEVG00005009321)	ENSGEVG00005011971	RBM14 (ENSGEVG00005012075)	CCS (ENSGEVG00005012113)	ENSGEVG00005012133	ENSGEVG00005012162	ZNRD2 (ENSGEVG00005012185)	FAM89B (ENSGEVG00005012202)	EHBP1L1 (ENSGEVG00005012233)	ENSGEVG00005012273	SIPA1 (ENSGEVG00005012326)	PCNX3 (ENSGEVG00005012424)	MAP3K11 (ENSGEVG00005012480)	ENSGEVG00005012567	ENSGEVG00005012622
Goode s thornscrub tortoise	MODERN SPECIES	18	ANGEL1 (ENSGEVG00005001078)	VASH1 (ENSGEVG00005001100)	ESRRB (ENSGEVG00005001119) #34	GPATCH2L (ENSGEVG00005001162) #33	IFT43 (ENSGEVG00005001178) #32	TGFB3 (ENSGEVG00005001201) #31	ENSGEVG00005001531 #29	ERG28 (ENSGEVG00005002067) #28	FLVCR2 (ENSGEVG00005002085) #26	BATF (ENSGEVG00005002108)	JDP2 (ENSGEVG00005002120) #25	FOS (ENSGEVG00005002133)	TMED10 (ENSGEVG00005002145)	NEK9 (ENSGEVG00005002164) #21	ZC2HC1C (ENSGEVG00005002199)	ENSGEVG00005002208 #22	MLH3 (ENSGEVG00005002234) #23	EIF2B2 (ENSGEVG00005002271)	PGF (ENSGEVG00005002282)	RPS6KL1 (ENSGEVG00005002304) #37	DLST (ENSGEVG00005002330) #36	PROX2 (ENSGEVG00005002365) #35	ENSGEVG00005002378	YLPM1 (ENSGEVG00005002397)	FCF1 (ENSGEVG00005002437)	AREL1 (ENSGEVG00005002458)	LTBP2 (ENSGEVG00005002485)	NPC2 (ENSGEVG00005002529) #11	ISCA2 (ENSGEVG00005002545) #12	SYNDIG1L (ENSGEVG00005002558)	VRTN (ENSGEVG00005002571)
Abingdon island giant tortoise	DUPLICATION
Abingdon island giant tortoise	MODERN SPECIES	142	B3GAT3 (ENSCABG00000021841)	EML3 (ENSCABG00000021840)	MTA2 (ENSCABG00000021826)	ENSCABG00000021823	TUT1 (ENSCABG00000021822)	TAF6L (ENSCABG00000021814)	TMEM179B (ENSCABG00000021812)	WDR74 (ENSCABG00000021798)	STX5 (ENSCABG00000021797)	ENSCABG00000021795	TMEM223 (ENSCABG00000021794)	ENSCABG00000021791	ENSCABG00000021790	ACTN3 (ENSCABG00000021783)	RCE1 (ENSCABG00000021774)	ENSCABG00000021771 #22	SPTBN2 (ENSCABG00000021629)	RBM14 (ENSCABG00000021623)	CCS (ENSCABG00000021621)	ENSCABG00000021619	ENSCABG00000021618	ENSCABG00000021616	ENSCABG00000021617	ENSCABG00000021613	ENSCABG00000021609	ZNRD2 (ENSCABG00000021606)	ENSCABG00000021605	EHBP1L1 (ENSCABG00000021601)	ENSCABG00000021597	SIPA1 (ENSCABG00000021585)	PCNX3 (ENSCABG00000021498)
Abingdon island giant tortoise	MODERN SPECIES	2201	ESRRB (ENSCABG00000022784) #34	GPATCH2L (ENSCABG00000022782) #33	ENSCABG00000022779	TGFB3 (ENSCABG00000022777) #31	TTLL5 (ENSCABG00000022774)	ENSCABG00000022772 #29	ERG28 (ENSCABG00000022770) #28	ENSCABG00000022769 #26	ENSCABG00000022767 #26	BATF (ENSCABG00000022766)	JDP2 (ENSCABG00000022764) #25	FOS (ENSCABG00000022762)	TMED10 (ENSCABG00000022757)	NEK9 (ENSCABG00000022754) #21	ENSCABG00000022749	ENSCABG00000022746 #22	MLH3 (ENSCABG00000022738) #23	EIF2B2 (ENSCABG00000022733)	PGF (ENSCABG00000022732)	RPS6KL1 (ENSCABG00000022731) #37	DLST (ENSCABG00000022730) #36	PROX2 (ENSCABG00000022729) #35	YLPM1 (ENSCABG00000022719)	FCF1 (ENSCABG00000022715)	AREL1 (ENSCABG00000022711)	LTBP2 (ENSCABG00000022709)	NPC2 (ENSCABG00000022707) #11	ISCA2 (ENSCABG00000022706) #12	ENSCABG00000022705	SYNDIG1L (ENSCABG00000022702)	VRTN (ENSCABG00000022701)
Anura	ANCESTRAL SPECIES	46	ENSGT00510000048522	ENSGT00940000162596	ENSGT00940000154297.A	ENSGT00940000159057	ENSGT00390000012703.b	ENSGT00940000153433.B.b.b ##34	ENSGT00940000162910 #29	ENSGT00390000010925 #28	ENSGT01030000234625.B.d #26	ENSGT00940000159745	ENSGT00940000161630	ENSGT00550000074954	ENSGT00940000159276	ENSGT00940000156145 #21	ENSGT00940000160947	ENSGT00390000011103.B #22	ENSGT00800000124176 #23	ENSGT00550000074908	ENSGT00940000159815 #37	ENSGT00930000151014 #36	ENSGT00440000039837	ENSGT00940000153117.B	ENSGT00940000156723	ENSGT00390000006223 #11	ENSGT00390000005700 #12	ENSGT00950000182955.a.a.b	ENSGT00940000157776	ENSGT00390000008402	ENSGT00940000156110	ENSGT00940000154427.A	ENSGT01100000263540.A.b
Frog	DUPLICATION
Frog	MODERN SPECIES	4	brms1 (ENSXETG00000020567)	b4gat1 (ENSXETG00000020571)	rin1 (ENSXETG00000020565)	pmt [provisional] (ENSXETG00000026169)	cd248 (ENSXETG00000046197)	foxa4 (ENSXETG00000026171)	rela (ENSXETG00000026173)	c11orf68 (ENSXETG00000020535)	drap1 (ENSXETG00000018519)	ENSXETG00000048824	ENSXETG00000041835	sart1 (ENSXETG00000011429)	eif1ad (ENSXETG00000011431)	zdhhc24 (ENSXETG00000042533)	prkd3 (ENSXETG00000011427)	ENSXETG00000047997 #22	sptbn2 (ENSXETG00000015170)	prokr1 (ENSXETG00000011423)	ccs (ENSXETG00000011424)	rbm4b (ENSXETG00000026649)	rbm14 (ENSXETG00000026650)	actn3 (ENSXETG00000011409)	ENSXETG00000038566	ctsf (ENSXETG00000017109)	pc.2 (ENSXETG00000008415)	lrfn4 (ENSXETG00000040727)	pacs1 (ENSXETG00000008416)	sf3b2 (ENSXETG00000008422)	cnih2 (ENSXETG00000008423)	znrd2 (ENSXETG00000045389)	ehbp1l1 (ENSXETG00000008426)
Frog	MODERN SPECIES	8	cipc (ENSXETG00000011071)	irf2bpl (ENSXETG00000011067)	lrrc74a (ENSXETG00000011065)	angel1 (ENSXETG00000013213)	vash1 (ENSXETG00000013214)	esrrb (ENSXETG00000013217) ##34	ift43 (ENSXETG00000013218)	ttll5 (ENSXETG00000013220) #29	erg28 (ENSXETG00000048974) #28	flvcr2 (ENSXETG00000027282) #26	batf (ENSXETG00000046017)	ENSXETG00000041470	fos (ENSXETG00000013238)	nek9 (ENSXETG00000013239) #21	ENSXETG00000013249	ENSXETG00000040528 #22	mlh3 (ENSXETG00000013252) #23	eif2b2 (ENSXETG00000013261)	rps6kl1 (ENSXETG00000013263) #37	dlst (ENSXETG00000013264) #36	tmed10 (ENSXETG00000013236)	ENSXETG00000041959	ylpm1 (ENSXETG00000013269)	fcf1 (ENSXETG00000027288)	arel1 (ENSXETG00000013271)	isca2 (ENSXETG00000031871) #12	npc2 (ENSXETG00000013295) #11	abcd4 (ENSXETG00000027291)	vsx2 (ENSXETG00000013302)	lin52 (ENSXETG00000027292)	aldh6a1 (ENSXETG00000013304)
Leishan spiny toad	DUPLICATION
Leishan spiny toad	MODERN SPECIES	1	ACTN3 (ENSLLEG00000014511)	ENSLLEG00000014400	ENSLLEG00000014325	ENSLLEG00000014283	ENSLLEG00000014203	CCS (ENSLLEG00000013909)	ENSLLEG00000013797	ENSLLEG00000013702	ENSLLEG00000013678	ENSLLEG00000013554	EIF1AD (ENSLLEG00000013491)	BANF1 (ENSLLEG00000013454)	ENSLLEG00000013424	ENSLLEG00000013101	RCE1 (ENSLLEG00000013023)	ENSLLEG00000012976 #22	ENSLLEG00000012954	SPTBN2 (ENSLLEG00000012397)	DRAP1 (ENSLLEG00000012290)	C11orf68 (ENSLLEG00000012261)	ENSLLEG00000012241	RELA (ENSLLEG00000012122)	ENSLLEG00000012092	ENSLLEG00000012083	CD248 (ENSLLEG00000012073)	ENSLLEG00000012060	ENSLLEG00000012035	ENSLLEG00000011945	RIN1 (ENSLLEG00000011798)	BRMS1 (ENSLLEG00000011718)	B4GAT1 (ENSLLEG00000011676)
Leishan spiny toad	MODERN SPECIES	153																ENSLLEG00000028047 #22	ENSLLEG00000028083 #23	EIF2B2 (ENSLLEG00000028124)	RPS6KL1 (ENSLLEG00000028185) #37
Coelacanth	DUPLICATION
Coelacanth	MODERN SPECIES	254											ENSLACG00000018597	PC (ENSLACG00000018580)	PYGM (ENSLACG00000018504)	SF1 (ENSLACG00000018493)	ENSLACG00000018447	ENSLACG00000018439 #22	ENSLACG00000018423	SPTBN2 (ENSLACG00000018388)	ENSLACG00000018377	ENSLACG00000018348	SPDYC (ENSLACG00000022183)	ENSLACG00000018325	CAPN1 (ENSLACG00000018300)	slc22a6l (ENSLACG00000018280)	FRMD8 (ENSLACG00000018256)	SCYL1 (ENSLACG00000018196)	EHD1 (ENSLACG00000018148)	CDC42BPG (ENSLACG00000018109)	ENSLACG00000018084	ENSLACG00000018045	ATG2A (ENSLACG00000017999) ##9
Coelacanth	MODERN SPECIES	226	ENSLACG00000014470	ANGEL1 (ENSLACG00000014598)	VASH1 (ENSLACG00000014715)	ESRRB (ENSLACG00000015515) #34	ENSLACG00000016470	TGFB3 (ENSLACG00000016642) #31	ENSLACG00000017282 #29	ERG28 (ENSLACG00000022190) #28	FLVCR2 (ENSLACG00000017625) #26	BATF (ENSLACG00000017801)	JDP2 (ENSLACG00000018083) #25	FOS (ENSLACG00000018157)	TMED10 (ENSLACG00000018204)	NEK9 (ENSLACG00000018276) #21	ENSLACG00000018306	ENSLACG00000018312 #22	MLH3 (ENSLACG00000018327) #23	EIF2B2 (ENSLACG00000018341)	ZNF410 (ENSLACG00000018355)	FAM161B (ENSLACG00000018376)	COQ6 (ENSLACG00000018382)	ENTPD5 (ENSLACG00000018392)	BBOF1 (ENSLACG00000018403)	ALDH6A1 (ENSLACG00000018413)	VSX2 (ENSLACG00000018477)	ENSLACG00000018500	abcd4 (ENSLACG00000018527)	VRTN (ENSLACG00000018560)	ENSLACG00000018629	SYNDIG1L (ENSLACG00000018632)	ISCA2 (ENSLACG00000018726) #12