Chordata	ANCESTRAL SPECIES																	ENSGT00930000150973.B #22
Vertebrata	ANCESTRAL SPECIES																	ENSGT00930000150973.B #22
Gnathostomata	ANCESTRAL SPECIES	558														ENSGT00390000005218 #20	ENSGT00390000004446 #21	ENSGT00930000150973.B #22	ENSGT00940000158244 #23	ENSGT00940000154950 #24	ENSGT00530000069080 #25
Euteleostomi	ANCESTRAL SPECIES	127										ENSGT00940000154108.b.a.a #15	ENSGT00940000160003 #17	ENSGT00390000017004.a.a #18	ENSGT00950000183088.a.b.b #19	ENSGT00390000005218 #20	ENSGT00390000004446 #21	ENSGT00930000150973.B #22	ENSGT00940000158244 #23	ENSGT00940000154950 #24	ENSGT00530000069080 #25	ENSGT00940000164073	ENSGT00390000009613.b #29	ENSGT00940000157370 #30	ENSGT00940000157714 #31	ENSGT00940000159984 #32	ENSGT00940000159660 #33	ENSGT00390000008294 #36	ENSGT00390000001376 #37	ENSGT00730000111880	ENSGT00940000159823	ENSGT00940000157910	ENSGT00950000182924.B.a.a
Sarcopterygii	ANCESTRAL SPECIES	156											ENSGT00940000160003 #17	ENSGT00390000017004.a.a #18	ENSGT00950000183088.a.b.b #19	ENSGT00390000005218 #20	ENSGT00390000004446 #21	ENSGT00930000150973.B #22	ENSGT00940000158244 #23	ENSGT00940000154950 #24	ENSGT00530000069080 #25	ENSGT00940000164073	ENSGT00390000009613.b #29	ENSGT00940000157370 #30	ENSGT00940000157714 #31	ENSGT00940000159984 #32	ENSGT00940000159660 #33	ENSGT00390000008294 #36	ENSGT00390000001376 #37	ENSGT00940000157910	ENSGT00940000159823	ENSGT00730000111880	ENSGT00950000182924.B.a.a
Tetrapoda	ANCESTRAL SPECIES	25	ENSGT00390000008787.a	ENSGT00940000158926	ENSGT00940000158625	ENSGT00390000001670	ENSGT00940000153169.A.b.b #8	ENSGT00940000156660 #9	ENSGT00390000013285 #11	ENSGT00940000156721 #12	ENSGT00940000153745.b #14	ENSGT00940000154108.b.a.a #15	ENSGT00940000160003 #17	ENSGT00390000017004.a.a #18	ENSGT00950000183088.a.b.b #19	ENSGT00390000005218 #20	ENSGT00390000004446 #21	ENSGT00930000150973.B #22	ENSGT00940000158244 #23	ENSGT00940000154950 #24	ENSGT00530000069080 #25	ENSGT00940000164073	ENSGT00390000009613.b #29	ENSGT00940000157370 #30	ENSGT00940000157714 #31	ENSGT00940000159984 #32	ENSGT00940000159660 #33	ENSGT00390000008294 #36	ENSGT00390000001376 #37	ENSGT00940000157910	ENSGT00940000159823	ENSGT00730000111880	ENSGT00950000182924.B.a.a
Amniota	ANCESTRAL SPECIES	2	ENSGT00940000158926	ENSGT00940000158625	ENSGT00390000001670	ENSGT00940000153169.A.b.b #8	ENSGT00940000156660 #9	ENSGT00390000013285 #11	ENSGT00940000156721 #12	ENSGT00940000160597 #13	ENSGT00940000153745.b #14	ENSGT00940000154108.b.a.a #15	ENSGT00940000160003 #17	ENSGT00390000017004.a.a #18	ENSGT00950000183088.a.b.b #19	ENSGT00390000005218 #20	ENSGT00390000004446 #21	ENSGT00930000150973.B #22	ENSGT00940000158244 #23	ENSGT00940000169429	ENSGT00940000154950 #24	ENSGT00530000069080 #25	ENSGT00940000164073	ENSGT00390000009613.b #29	ENSGT00940000157370 #30	ENSGT00940000157714 #31	ENSGT00940000159984 #32	ENSGT00940000159660 #33	ENSGT00390000008294 #36	ENSGT00390000001376 #37	ENSGT00940000157910	ENSGT00940000159823	ENSGT00730000111880
Mammalia	ANCESTRAL SPECIES	1	ENSGT00940000158625	ENSGT00390000001670	ENSGT00940000153169.A.b.b #8	ENSGT00940000156660 #9	ENSGT00390000013285.b #10	ENSGT00390000013285.a #11	ENSGT00940000156721 #12	ENSGT00940000160597 #13	ENSGT00940000153745.b #14	ENSGT00940000154108.b.a.a #15	ENSGT00940000160003 #17	ENSGT00390000017004.a.a #18	ENSGT00950000183088.a.b.b #19	ENSGT00390000005218 #20	ENSGT00390000004446 #21	ENSGT00930000150973.B #22	ENSGT00940000158244 #23	ENSGT00940000169429	ENSGT00940000154950 #24	ENSGT00530000069080 #25	ENSGT00940000162188 #26	ENSGT00940000164073	ENSGT00390000009613.b #29	ENSGT00940000157370 #30	ENSGT00940000157714 #31	ENSGT00940000159984 #32	ENSGT00940000159660 #33	ENSGT00390000008294 #36	ENSGT00390000001376 #37	ENSGT00940000157910	ENSGT00940000159823
Theria	ANCESTRAL SPECIES	6	ENSGT00940000158625	ENSGT00390000001670	ENSGT00940000153169.A.b.b.a.a #8	ENSGT00940000156660 #9	ENSGT00390000013285.b #10	ENSGT00390000013285.a #11	ENSGT00940000156721 #12	ENSGT00940000160597 #13	ENSGT00940000153745.b #14	ENSGT00940000154108.b.a.a #15	ENSGT00940000160003 #17	ENSGT00390000017004.a.a #18	ENSGT00950000183088.a.b.b #19	ENSGT00390000005218 #20	ENSGT00390000004446 #21	ENSGT00930000150973.B #22	ENSGT00940000158244 #23	ENSGT00940000169429	ENSGT00940000154950 #24	ENSGT00530000069080 #25	ENSGT00940000162188 #26	ENSGT00390000009613.b #29	ENSGT00940000157370 #30	ENSGT00940000157714 #31	ENSGT00940000159984 #32	ENSGT00940000159660 #33	ENSGT00390000008294.e.b #36	ENSGT00390000001376 #37	ENSGT00940000157910	ENSGT00940000159823	ENSGT00730000111880
Eutheria	ANCESTRAL SPECIES	2	ENSGT00940000158625	ENSGT00390000001670	ENSGT00940000153169.A.b.b.a.a #8	ENSGT00940000156660 #9	ENSGT00390000013285.b #10	ENSGT00390000013285.a #11	ENSGT00940000156721 #12	ENSGT00940000160597 #13	ENSGT00940000153745.b #14	ENSGT00940000154108.b.a.a #15	ENSGT00940000160003 #17	ENSGT00390000017004.a.a #18	ENSGT00950000183088.a.b.b #19	ENSGT00390000005218 #20	ENSGT00390000004446 #21	ENSGT00930000150973.B #22	ENSGT00940000158244 #23	ENSGT00940000169429	ENSGT00940000154950 #24	ENSGT00530000069080 #25	ENSGT00940000162188 #26	ENSGT00390000009613.b #29	ENSGT00940000157370 #30	ENSGT00940000157714 #31	ENSGT00940000159984 #32	ENSGT00940000159660 #33	ENSGT00390000008294.e.b #36	ENSGT00390000001376 #37	ENSGT00940000157910	ENSGT00940000159823	ENSGT00730000111880
Boreoeutheria	ANCESTRAL SPECIES	8	ENSGT00390000001670	ENSGT00940000153169.A.b.b.a.b ##8	ENSGT00940000153169.A.b.b.a.a.b #8	ENSGT00940000156660 #9	ENSGT00390000013285.b #10	ENSGT00390000013285.a #11	ENSGT00940000156721 #12	ENSGT00940000160597 #13	ENSGT00940000153745.b #14	ENSGT00940000154108.b.a.a #15	ENSGT00940000160003 #17	ENSGT00390000017004.a.a #18	ENSGT00950000183088.a.b.b #19	ENSGT00390000005218 #20	ENSGT00390000004446 #21	ENSGT00930000150973.B #22	ENSGT00940000158244 #23	ENSGT00940000169429	ENSGT00940000154950 #24	ENSGT00530000069080 #25	ENSGT00940000162188 #26	ENSGT00390000009613.b #29	ENSGT00940000157370 #30	ENSGT00940000157714 #31	ENSGT00940000159984 #32	ENSGT00940000159660 #33	ENSGT00390000008294.f ##36	ENSGT00390000001376 #37	ENSGT00940000157910	ENSGT00940000159823	ENSGT00730000111880
Euarchontoglires	ANCESTRAL SPECIES	9	ENSGT00940000158625	ENSGT00390000001670	ENSGT00940000153169.A.b.b.a.b ##8	ENSGT00940000156660 #9	ENSGT00390000013285.b #10	ENSGT00390000013285.a #11	ENSGT00940000156721 #12	ENSGT00940000160597 #13	ENSGT00940000153745.b #14	ENSGT00940000154108.b.a.a #15	ENSGT00940000160003 #17	ENSGT00390000017004.a.a #18	ENSGT00950000183088.a.b.b #19	ENSGT00390000005218 #20	ENSGT00390000004446 #21	ENSGT00930000150973.B #22	ENSGT00940000158244 #23	ENSGT00940000154950 #24	ENSGT00530000069080 #25	ENSGT00940000162188 #26	ENSGT00390000009613.b #29	ENSGT00940000157370 #30	ENSGT00940000157714 #31	ENSGT00940000159984 #32	ENSGT00940000159660 #33	ENSGT00390000008294.f ##36	ENSGT00390000001376 #37	ENSGT00940000157910	ENSGT00940000159823	ENSGT00950000182924.B.a.a	ENSGT00940000158059
Primates	ANCESTRAL SPECIES	10	ENSGT00940000158625	ENSGT00390000001670	ENSGT00940000153169.A.b.b.a.a.b #8	ENSGT00940000156660 #9	ENSGT00390000013285.b #10	ENSGT00390000013285.a #11	ENSGT00940000156721 #12	ENSGT00940000160597 #13	ENSGT00940000153745.b #14	ENSGT00940000154108.b.a.a #15	ENSGT00940000160003 #17	ENSGT00390000017004.a.a #18	ENSGT00950000183088.a.b.b #19	ENSGT00390000005218 #20	ENSGT00390000004446 #21	ENSGT00930000150973.B #22	ENSGT00940000158244 #23	ENSGT00940000154950 #24	ENSGT00530000069080 #25	ENSGT00940000162188 #26	ENSGT00390000009613.b #29	ENSGT00940000157370 #30	ENSGT00940000157714 #31	ENSGT00940000159984 #32	ENSGT00940000159660 #33	ENSGT00390000008294.f ##36	ENSGT00390000001376 #37	ENSGT00940000157910	ENSGT00940000159823	ENSGT00950000182924.B.a.a	ENSGT00940000158059
Haplorrhini	ANCESTRAL SPECIES	20	ENSGT00390000001670	ENSGT00940000153169.A.b.b.a.a.a.b ##8	ENSGT00940000153169.A.b.b.a.a.b #8	ENSGT00940000156660 #9	ENSGT00390000013285.b #10	ENSGT00390000013285.a #11	ENSGT00940000156721 #12	ENSGT00940000160597 #13	ENSGT00940000153745.b #14	ENSGT00940000154108.b.a.a #15	ENSGT00940000160003 #17	ENSGT00390000017004.a.a #18	ENSGT00950000183088.a.b.b #19	ENSGT00390000005218 #20	ENSGT00390000004446 #21	ENSGT00930000150973.B #22	ENSGT00940000158244 #23	ENSGT00940000154950 #24	ENSGT00530000069080 #25	ENSGT00940000162188 #26	ENSGT00390000009613.b #29	ENSGT00940000157370 #30	ENSGT00940000157714 #31	ENSGT00940000159984 #32	ENSGT00940000159660 #33	ENSGT00390000008294.f ##36	ENSGT00390000008294.e.b.a.b #36	ENSGT00390000001376 #37	ENSGT00940000157910	ENSGT00940000159823	ENSGT00950000182924.B.a.a
Simiiformes	ANCESTRAL SPECIES	10	ENSGT00940000158625	ENSGT00390000001670	ENSGT00940000153169.A.b.b.a.a.b #8	ENSGT00940000156660 #9	ENSGT00390000013285.b #10	ENSGT00390000013285.a #11	ENSGT00940000156721 #12	ENSGT00940000160597 #13	ENSGT00940000153745.b #14	ENSGT00940000154108.b.a.a #15	ENSGT00940000160003 #17	ENSGT00390000017004.a.a #18	ENSGT00950000183088.a.b.b #19	ENSGT00390000005218 #20	ENSGT00390000004446 #21	ENSGT00930000150973.B #22	ENSGT00940000158244 #23	ENSGT00940000154950 #24	ENSGT00530000069080 #25	ENSGT00940000162188 #26	ENSGT00390000009613.b #29	ENSGT00940000157370 #30	ENSGT00940000157714 #31	ENSGT00940000159984 #32	ENSGT00940000159660 #33	ENSGT00390000008294.f ##36	ENSGT00390000001376.ab.b.b #37	ENSGT00940000157910	ENSGT00940000159823	ENSGT00950000182924.B.a.a	ENSGT00940000158059
Catarrhini	ANCESTRAL SPECIES	14	ENSGT00940000153169.A.b.b.a.b ##8	ENSGT00390000003422.k.a #7	ENSGT00940000153169.A.b.b.a.a.b #8	ENSGT00940000156660 #9	ENSGT00390000013285.b #10	ENSGT00390000013285.a #11	ENSGT00940000156721 #12	ENSGT00940000160597 #13	ENSGT00940000153745.b #14	ENSGT00940000154108.b.a.a #15	ENSGT00940000160003 #17	ENSGT00390000017004.a.a #18	ENSGT00950000183088.a.b.b #19	ENSGT00390000005218 #20	ENSGT00390000004446 #21	ENSGT00930000150973.B #22	ENSGT00940000158244 #23	ENSGT00940000154950 #24	ENSGT00530000069080 #25	ENSGT00940000162188 #26	ENSGT00940000164870 #28	ENSGT00390000009613.b #29	ENSGT00940000157370 #30	ENSGT00940000157714 #31	ENSGT00940000159984 #32	ENSGT00940000159660 #33	ENSGT00390000008294.f ##36	ENSGT00390000008294.e.b.a.b #36	ENSGT00390000001376.ab.b.b #37	ENSGT00940000157910	ENSGT00940000159823
Cercopithecidae	ANCESTRAL SPECIES	10	ENSGT00390000003422.k.a #7	ENSGT00940000153169.A.b.b.a.a.b #8	ENSGT00940000156660 #9	ENSGT00390000013285.b #10	ENSGT00390000013285.a #11	ENSGT00940000156721 #12	ENSGT00940000160597 #13	ENSGT00940000153745.b #14	ENSGT00940000154108.b.a.a #15	ENSGT00940000160003 #17	ENSGT00390000017004.a.a #18	ENSGT00390000008128.d	ENSGT00950000183088.a.b.b #19	ENSGT00390000005218 #20	ENSGT00390000004446 #21	ENSGT00930000150973.B #22	ENSGT00940000158244 #23	ENSGT00940000154950 #24	ENSGT00530000069080 #25	ENSGT00940000162188 #26	ENSGT00940000164870 #28	ENSGT00390000009613.b #29	ENSGT00940000157370 #30	ENSGT00940000157714 #31	ENSGT00940000159984 #32	ENSGT00940000159660 #33	ENSGT00390000008294.f ##36	ENSGT00390000008294.e.b.a.b.b ##36	ENSGT00390000001376.ab.b.b #37	ENSGT00940000157910	ENSGT00940000159823
Cercopithecinae	ANCESTRAL SPECIES	14	ENSGT00390000003422.k.a #7	ENSGT00940000153169.A.b.b.a.a.b #8	ENSGT00940000156660 #9	ENSGT00390000013285.b #10	ENSGT00390000013285.a #11	ENSGT00940000156721 #12	ENSGT00940000160597 #13	ENSGT00940000153745.b #14	ENSGT00940000154108.b.a.a #15	ENSGT00940000160003 #17	ENSGT00390000017004.a.a #18	ENSGT00390000008128.d	ENSGT00950000183088.a.b.b #19	ENSGT00390000005218 #20	ENSGT00390000004446 #21	ENSGT00930000150973.B #22	ENSGT00940000158244 #23	ENSGT00940000154950 #24	ENSGT00530000069080 #25	ENSGT00940000162188 #26	ENSGT00940000164870 #28	ENSGT00390000009613.b #29	ENSGT00940000157370 #30	ENSGT00940000157714 #31	ENSGT00940000159984 #32	ENSGT00940000159660 #33	ENSGT00390000008294.f ##36	ENSGT00390000001376.ab.b.b #37	ENSGT00940000157910	ENSGT00940000159823	ENSGT00950000182924.B.a.a
Cercopithecinae_a	ANCESTRAL SPECIES	13	ENSGT00390000003422.k.a #7	ENSGT00940000153169.A.b.b.a.a.b #8	ENSGT00940000156660 #9	ENSGT00390000013285.b #10	ENSGT00390000013285.a #11	ENSGT00940000156721 #12	ENSGT00940000160597 #13	ENSGT00940000153745.b #14	ENSGT00940000154108.b.a.a #15	ENSGT00940000160003 #17	ENSGT00390000017004.a.a #18	ENSGT00390000008128.d	ENSGT00950000183088.a.b.b #19	ENSGT00390000005218 #20	ENSGT00390000004446 #21	ENSGT00930000150973.B #22	ENSGT00940000158244 #23	ENSGT00940000154950 #24	ENSGT00530000069080 #25	ENSGT00940000162188 #26	ENSGT00940000164870 #28	ENSGT00390000009613.b #29	ENSGT00940000157370 #30	ENSGT00940000157714 #31	ENSGT00940000159984 #32	ENSGT00940000159660 #33	ENSGT00390000008294.f ##36	ENSGT00390000001376.ab.b.b #37	ENSGT00940000157910	ENSGT00940000159823	ENSGT00940000153425.a.a.a.a.a
Macaca	ANCESTRAL SPECIES	18	ENSGT00940000153169.A.b.b.a.a.b #8	ENSGT00940000156660 #9	ENSGT00390000013285.b #10	ENSGT00390000013285.a #11	ENSGT00940000156721 #12	ENSGT00940000160597 #13	ENSGT00940000153745.b #14	ENSGT00940000154108.b.a.a #15	ENSGT00910000147632	ENSGT00940000160003 #17	ENSGT00390000017004.a.a #18	ENSGT00390000008128.d	ENSGT00950000183088.a.b.b #19	ENSGT00390000005218 #20	ENSGT00390000004446 #21	ENSGT00930000150973.B #22	ENSGT00940000158244 #23	ENSGT00940000154950 #24	ENSGT00530000069080 #25	ENSGT00940000162188 #26	ENSGT00940000164870 #28	ENSGT00390000009613.b #29	ENSGT00940000157370 #30	ENSGT00940000157714 #31	ENSGT00940000159984 #32	ENSGT00940000159660 #33	ENSGT00390000008294.f ##36	ENSGT00390000001376.ab.b.b #37	ENSGT00940000157910	ENSGT00940000159823	ENSGT00940000153425.a.a.a.a.a
Macaca_a	ANCESTRAL SPECIES	12	ENSGT00390000003422.k.a #7	ENSGT00940000153169.A.b.b.a.a.b #8	ENSGT00940000156660 #9	ENSGT00390000013285.b #10	ENSGT00390000013285.a #11	ENSGT00940000156721 #12	ENSGT00940000160597 #13	ENSGT00940000153745.b #14	ENSGT00940000154108.b.a.a #15	ENSGT00390000005727.a.b.a.b.c.a.a.f #16	ENSGT00940000160003 #17	ENSGT00390000017004.a.a #18	ENSGT00950000183088.a.b.b #19	ENSGT00390000005218 #20	ENSGT00390000004446 #21	ENSGT00930000150973.B #22	ENSGT00940000158244 #23	ENSGT00940000154950 #24	ENSGT00530000069080 #25	ENSGT00940000162188 #26	ENSGT00980000202103.B.a.a.a #27	ENSGT00940000164870 #28	ENSGT00390000009613.b #29	ENSGT00940000157370 #30	ENSGT00940000157714 #31	ENSGT00940000159984 #32	ENSGT00940000159660 #33	ENSGT01030000240089 #35	ENSGT00390000008294.e.b.a.b.a.b #36	ENSGT00390000001376.ab.b.b #37	ENSGT00940000157910
Rhesus	MODERN SPECIES	15	ENSMMUG00000042419 #7	UBE2D3 (ENSMMUG00000011201) #8	CISD2 (ENSMMUG00000061265) #9	SLC9B1 (ENSMMUG00000011206) #10	SLC9B2 (ENSMMUG00000019083) #11	BDH2 (ENSMMUG00000019085) #12	CENPE (ENSMMUG00000019089) #13	TACR3 (ENSMMUG00000049998) #14	CXXC4 (ENSMMUG00000051649) #15	ENSMMUG00000007216 #16	TET2 (ENSMMUG00000017831) #17	PPA2 (ENSMMUG00000017004) #18	ARHGEF38 (ENSMMUG00000010941) #19	INTS12 (ENSMMUG00000011722) #20	GSTCD (ENSMMUG00000018811) #21	NPNT (ENSMMUG00000023428) #22	TBCK (ENSMMUG00000015756) #23	AIMP1 (ENSMMUG00000015759) #24	GIMD1 (ENSMMUG00000047132) #25	DKK2 (ENSMMUG00000051654) #26	ENSMMUG00000063746 #27	ENSMMUG00000058075 #28	PAPSS1 (ENSMMUG00000019907) #29	SGMS2 (ENSMMUG00000017834) #30	CYP2U1 (ENSMMUG00000058349) #31	HADH (ENSMMUG00000023254) #32	LEF1 (ENSMMUG00000023256) #33	ENSMMUG00000009066 #34	ENSMMUG00000060432 #35	RPL34 (ENSMMUG00000052609) #36	OSTC (ENSMMUG00000011902) #37
Crab-eating macaque	MODERN SPECIES	15	ENSMFAG00000054394	ENSMFAG00000033046 #9	SLC9B1 (ENSMFAG00000042668) #10	SLC9B2 (ENSMFAG00000046399) #11	BDH2 (ENSMFAG00000036890) #12	CENPE (ENSMFAG00000039560) #13	TACR3 (ENSMFAG00000061984) #14	ENSMFAG00000026620	ENSMFAG00000036512 #16	ENSMFAG00000054373	TET2 (ENSMFAG00000043744) #17	PPA2 (ENSMFAG00000040113) #18	ARHGEF38 (ENSMFAG00000041172) #19	INTS12 (ENSMFAG00000042815) #20	GSTCD (ENSMFAG00000000581) #21	NPNT (ENSMFAG00000045955) #22	TBCK (ENSMFAG00000034054) #23	AIMP1 (ENSMFAG00000044822) #24	GIMD1 (ENSMFAG00000007005) #25	DKK2 (ENSMFAG00000032422) #26	ENSMFAG00000054818 #27	ENSMFAG00000003949	PAPSS1 (ENSMFAG00000032785) #29	SGMS2 (ENSMFAG00000041579) #30	CYP2U1 (ENSMFAG00000003841) #31	HADH (ENSMFAG00000033488) #32	ENSMFAG00000002923	LEF1 (ENSMFAG00000037201) #33	ENSMFAG00000062885 #35	ENSMFAG00000034368 ##36	ENSMFAG00000034553 #37
Pig-tailed macaque	MODERN SPECIES	126	ENSMNEG00000027081	SLC9B1 (ENSMNEG00000037351) #10	SLC9B2 (ENSMNEG00000044785) #11	BDH2 (ENSMNEG00000029165) #12	CENPE (ENSMNEG00000040148) #13	ENSMNEG00000018206	TACR3 (ENSMNEG00000033579) #14	CXXC4 (ENSMNEG00000038974) #15	ENSMNEG00000016504	TET2 (ENSMNEG00000032282) #17	PPA2 (ENSMNEG00000043169) #18	ENSMNEG00000028407	ARHGEF38 (ENSMNEG00000029734) #19	INTS12 (ENSMNEG00000043289) #20	GSTCD (ENSMNEG00000032450) #21	NPNT (ENSMNEG00000030807) #22	TBCK (ENSMNEG00000044135) #23	AIMP1 (ENSMNEG00000030181) #24	GIMD1 (ENSMNEG00000032315) #25	DKK2 (ENSMNEG00000034817) #26	ENSMNEG00000037880 #28	ENSMNEG00000044748	PAPSS1 (ENSMNEG00000030623) #29	SGMS2 (ENSMNEG00000034744) #30	CYP2U1 (ENSMNEG00000030586) #31	HADH (ENSMNEG00000031684) #32	LEF1 (ENSMNEG00000043505) #33	ENSMNEG00000042248 ##36	ENSMNEG00000030618 #37	ETNPPL (ENSMNEG00000040127)	COL25A1 (ENSMNEG00000032070)
Cercopithecinae_b	ANCESTRAL SPECIES	6	ENSGT00390000003422.l ##7	ENSGT00940000153169.A.b.b.a.a.b #8	ENSGT00940000156660 #9	ENSGT00390000013285.b #10	ENSGT00390000013285.a #11	ENSGT00940000156721 #12	ENSGT00940000160597 #13	ENSGT00940000153745.b #14	ENSGT00940000154108.b.a.a #15	ENSGT00940000160003 #17	ENSGT00390000017004.a.a #18	ENSGT00390000008128.d	ENSGT00950000183088.a.b.b #19	ENSGT00390000005218 #20	ENSGT00390000004446 #21	ENSGT00930000150973.B #22	ENSGT00940000158244 #23	ENSGT00940000154950 #24	ENSGT00530000069080 #25	ENSGT00940000162188 #26	ENSGT00390000009613.b #29	ENSGT00940000157370 #30	ENSGT00940000157714 #31	ENSGT00940000159984 #32	ENSGT00940000159660 #33	ENSGT00390000008294.f ##36	ENSGT00390000001376.ab.b.b #37	ENSGT00940000157910	ENSGT00940000159823	ENSGT00940000153425.a.a.a.a.a	ENSGT00950000182924.B.a.a
Cercopithecinae_d	ANCESTRAL SPECIES	62	ENSGT00390000003422.l ##7	ENSGT00940000153169.A.b.b.a.a.b #8	ENSGT00940000156660 #9	ENSGT00390000013285.b #10	ENSGT00390000013285.a #11	ENSGT00940000156721 #12	ENSGT00940000160597 #13	ENSGT00940000153745.b #14	ENSGT00940000154108.b.a.a #15	ENSGT00940000160003 #17	ENSGT00390000017004.a.a #18	ENSGT00390000008128.d	ENSGT00950000183088.a.b.b #19	ENSGT00390000005218 #20	ENSGT00390000004446 #21	ENSGT00930000150973.B #22	ENSGT00940000158244 #23	ENSGT00940000154950 #24	ENSGT00530000069080 #25	ENSGT00940000162188 #26	ENSGT00390000009613.b #29	ENSGT00940000157370 #30	ENSGT00940000157714 #31	ENSGT00940000159984 #32	ENSGT00940000159660 #33	ENSGT00390000008294.e.b.a.a ##36	ENSGT00390000001376.ab.b.b #37	ENSGT00940000157910	ENSGT00940000159823	ENSGT00940000153425.a.a.a.a.a	ENSGT00950000182924.B.a.a
Sooty mangabey	MODERN SPECIES	348	ENSCATG00000029256 ##7	ENSCATG00000037960 #8	CISD2 (ENSCATG00000040750) #9	SLC9B1 (ENSCATG00000022744) #10	SLC9B2 (ENSCATG00000035468) #11	BDH2 (ENSCATG00000012596) #12	CENPE (ENSCATG00000038459) #13	TACR3 (ENSCATG00000036705) #14	CXXC4 (ENSCATG00000036439) #15	TET2 (ENSCATG00000044104) #17	PPA2 (ENSCATG00000016898) #18	ENSCATG00000028897	ARHGEF38 (ENSCATG00000043411) #19	INTS12 (ENSCATG00000029222) #20	GSTCD (ENSCATG00000010872) #21	NPNT (ENSCATG00000029952) #22	TBCK (ENSCATG00000038155) #23	AIMP1 (ENSCATG00000034569) #24	GIMD1 (ENSCATG00000039819) #25	DKK2 (ENSCATG00000042474) #26	ENSCATG00000043463	PAPSS1 (ENSCATG00000028277) #29	SGMS2 (ENSCATG00000044120) #30	CYP2U1 (ENSCATG00000035461) #31	HADH (ENSCATG00000040474) #32	LEF1 (ENSCATG00000035015) #33	ENSCATG00000042942 ##36	ENSCATG00000035272 #37	ETNPPL (ENSCATG00000032306)	COL25A1 (ENSCATG00000031315)	ENSCATG00000031369
Drill	MODERN SPECIES	1491									TET2 (ENSMLEG00000027747) #17	PPA2 (ENSMLEG00000027295) #18	ENSMLEG00000039453	ENSMLEG00000030978 #19	ARHGEF38 (ENSMLEG00000039831) #19	INTS12 (ENSMLEG00000039747) #20	GSTCD (ENSMLEG00000038302) #21	NPNT (ENSMLEG00000040714) #22	TBCK (ENSMLEG00000000098) #23	AIMP1 (ENSMLEG00000040650) #24	GIMD1 (ENSMLEG00000035992) #25
Olive baboon	MODERN SPECIES	13	BDH2 (ENSPANG00000012768) #12	CENPE (ENSPANG00000004584) #13	CNN2 (ENSPANG00000013744)	TACR3 (ENSPANG00000009532) #14	ENSPANG00000038729	CXXC4 (ENSPANG00000043014) #15	ENSPANG00000042158	TET2 (ENSPANG00000005238) #17	ENSPANG00000050354	ENSPANG00000044728	PPA2 (ENSPANG00000001031) #18	ENSPANG00000044802	ARHGEF38 (ENSPANG00000033804) #19	INTS12 (ENSPANG00000005635) #20	GSTCD (ENSPANG00000015065) #21	NPNT (ENSPANG00000012406) #22	TBCK (ENSPANG00000010441) #23	ENSPANG00000051168	AIMP1 (ENSPANG00000024758) #24	GIMD1 (ENSPANG00000046883) #25	DKK2 (ENSPANG00000040092) #26	PAPSS1 (ENSPANG00000015660) #29	SGMS2 (ENSPANG00000024436) #30	CYP2U1 (ENSPANG00000011417) #31	HADH (ENSPANG00000009529) #32	LEF1 (ENSPANG00000020598) #33	ENSPANG00000030212 ##36	ENSPANG00000016693 #37	ETNPPL (ENSPANG00000026027)	COL25A1 (ENSPANG00000007137)	SEC24B (ENSPANG00000018888)
Vervet Monkey	MODERN SPECIES	26	MANBA (ENSCSAG00000004046)	CISD2 (ENSCSAG00000004044) #9	SLC9B1 (ENSCSAG00000004042) #10	SLC9B2 (ENSCSAG00000004039) #11	BDH2 (ENSCSAG00000004035) #12	ENSCSAG00000004023	ENSCSAG00000004017 #13	TACR3 (ENSCSAG00000004016) #14	CXXC4 (ENSCSAG00000004010) #15	TET2 (ENSCSAG00000004006) #17	PPA2 (ENSCSAG00000004005) #18	ENSCSAG00000004002 #19	ENSCSAG00000003997 #19	INTS12 (ENSCSAG00000003995) #20	GSTCD (ENSCSAG00000003991) #21	NPNT (ENSCSAG00000003989) #22	TBCK (ENSCSAG00000003984) #23	AIMP1 (ENSCSAG00000003982) #24	GIMD1 (ENSCSAG00000003981) #25	DKK2 (ENSCSAG00000003978) #26	PAPSS1 (ENSCSAG00000003977) #29	ENSCSAG00000000403	SGMS2 (ENSCSAG00000003975) #30	CYP2U1 (ENSCSAG00000003974) #31	HADH (ENSCSAG00000003972) #32	LEF1 (ENSCSAG00000003970) #33	ETNPPL (ENSCSAG00000003965)	COL25A1 (ENSCSAG00000003955)	SEC24B (ENSCSAG00000003940)	MCUB (ENSCSAG00000003935)	CASP6 (ENSCSAG00000003933)
Rhinopithecus	ANCESTRAL SPECIES	629											ENSGT00390000017004.a.a.i #18	ENSGT00390000008128.d	ENSGT00950000183088.a.b.b #19	ENSGT00390000005218 #20	ENSGT00390000004446 #21	ENSGT00930000150973.B #22
Black snub-nosed monkey	MODERN SPECIES	2362										PPA2 (ENSRBIG00000043468) #18	ENSRBIG00000040028	ENSRBIG00000038139 #19	ARHGEF38 (ENSRBIG00000000261) #19	INTS12 (ENSRBIG00000035801) #20	GSTCD (ENSRBIG00000040875) #21	NPNT (ENSRBIG00000029303) #22
Golden snub-nosed monkey	MODERN SPECIES	1609								TET2 (ENSRROG00000016562) #17	ENSRROG00000038759	PPA2 (ENSRROG00000040523) #18	ENSRROG00000026308	ENSRROG00000045368 #19	ARHGEF38 (ENSRROG00000034633) #19	INTS12 (ENSRROG00000035377) #20	GSTCD (ENSRROG00000035497) #21	NPNT (ENSRROG00000043309) #22
Hominoidea	ANCESTRAL SPECIES	10	ENSGT00390000003422.k.a #7	ENSGT00940000153169.A.b.b.a.a.b #8	ENSGT00940000156660 #9	ENSGT00390000013285.b #10	ENSGT00390000013285.a #11	ENSGT00940000156721 #12	ENSGT00940000160597 #13	ENSGT00940000153745.b #14	ENSGT00910000147167	ENSGT00940000154108.b.a.a #15	ENSGT00940000160003 #17	ENSGT00390000017004.a.a #18	ENSGT00950000183088.a.b.b #19	ENSGT00390000005218 #20	ENSGT00390000004446 #21	ENSGT00930000150973.B #22	ENSGT00940000158244 #23	ENSGT00940000154950 #24	ENSGT00530000069080 #25	ENSGT00940000162188 #26	ENSGT00940000164870 #28	ENSGT00390000009613.b #29	ENSGT00940000157370 #30	ENSGT00940000157714 #31	ENSGT00940000159984 #32	ENSGT00940000159660 #33	ENSGT00390000008294.f ##36	ENSGT00390000001376.ab.b.b #37	ENSGT00940000157910	ENSGT00940000159823	ENSGT00940000153425.a.a.a.b
Hominidae	ANCESTRAL SPECIES	12	ENSGT00390000003422.l.a ##7	ENSGT00940000153169.A.b.b.a.a.b #8	ENSGT00940000156660 #9	ENSGT00390000013285.b #10	ENSGT00390000013285.a #11	ENSGT00940000156721 #12	ENSGT00940000160597 #13	ENSGT00940000153745.b #14	ENSGT00910000147167	ENSGT00940000154108.b.a.a #15	ENSGT00940000160003 #17	ENSGT00390000017004.a.a #18	ENSGT00950000183088.a.b.b #19	ENSGT00390000005218 #20	ENSGT00390000004446 #21	ENSGT00930000150973.B #22	ENSGT00940000158244 #23	ENSGT00940000154950 #24	ENSGT00530000069080 #25	ENSGT00940000162188 #26	ENSGT00940000164870 #28	ENSGT00390000009613.b #29	ENSGT00940000157370 #30	ENSGT00940000157714 #31	ENSGT00940000159984 #32	ENSGT00940000159660 #33	ENSGT00390000008294.f ##36	ENSGT00390000001376.ab.b.b #37	ENSGT00940000157910	ENSGT00940000159823	ENSGT00940000153425.a.a.a.b
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	11	ENSGT00940000156660 #9	ENSGT00390000013285.b.a #10	ENSGT00390000013285.a #11	ENSGT00940000156721 #12	ENSGT00940000160597 #13	ENSGT00940000153745.b #14	ENSGT00910000147167	ENSGT00940000154108.b.a.a #15	ENSGT00940000160003 #17	ENSGT00390000017004.a.a #18	ENSGT00940000154037.A.n.b.a	ENSGT00390000008128.d	ENSGT00950000183088.a.b.b #19	ENSGT00390000005218 #20	ENSGT00390000004446 #21	ENSGT00930000150973.B #22	ENSGT00940000158244 #23	ENSGT00940000154950 #24	ENSGT00530000069080 #25	ENSGT00940000162188 #26	ENSGT00940000164870 #28	ENSGT00390000009613.b #29	ENSGT00940000157370 #30	ENSGT00940000157714 #31	ENSGT00940000159984 #32	ENSGT00940000159660 #33	ENSGT00390000008294.f ##36	ENSGT00390000001376.ab.b.b #37	ENSGT00940000157910	ENSGT00940000159823	ENSGT00940000153425.a.a.a.b
Homo/Pan group	ANCESTRAL SPECIES	10	ENSGT00940000156660 #9	ENSGT00390000013285.b.a #10	ENSGT00390000013285.a #11	ENSGT00940000156721 #12	ENSGT00940000160597 #13	ENSGT00940000153745.b #14	ENSGT00910000147167	ENSGT00940000154108.b.a.a #15	ENSGT00940000160003 #17	ENSGT00390000017004.a.a #18	ENSGT00940000154037.A.n.b.a	ENSGT00390000008128.d	ENSGT00950000183088.a.b.b #19	ENSGT00390000005218 #20	ENSGT00390000004446 #21	ENSGT00930000150973.B #22	ENSGT00940000158244 #23	ENSGT00940000154950 #24	ENSGT00530000069080 #25	ENSGT00940000162188 #26	ENSGT00940000164870 #28	ENSGT00390000009613.b #29	ENSGT00940000157370 #30	ENSGT00940000157714 #31	ENSGT00940000159984 #32	ENSGT00940000159660 #33	ENSGT00390000008294.f ##36	ENSGT00390000001376.ab.b.b #37	ENSGT00940000157910	ENSGT00940000159823	ENSGT00940000153425.a.a.a.b
Pan	ANCESTRAL SPECIES	7	ENSGT00940000156660 #9	ENSGT00390000013285.b.a #10	ENSGT00390000013285.a #11	ENSGT00940000156721 #12	ENSGT00940000160597 #13	ENSGT00940000153745.b #14	ENSGT00910000147167	ENSGT00940000154108.b.a.a #15	ENSGT00940000160003 #17	ENSGT00390000017004.a.a #18	ENSGT00940000154037.A.n.b.a	ENSGT00390000008128.d	ENSGT00950000183088.a.b.b #19	ENSGT00390000005218 #20	ENSGT00390000004446 #21	ENSGT00930000150973.B #22	ENSGT00940000158244 #23	ENSGT00940000154950 #24	ENSGT00530000069080 #25	ENSGT00940000162188 #26	ENSGT00940000164870 #28	ENSGT00390000009613.b #29	ENSGT00940000157370 #30	ENSGT00940000157714 #31	ENSGT00940000159984 #32	ENSGT00940000159660 #33	ENSGT00390000008294.f ##36	ENSGT00390000001376.ab.b.b #37	ENSGT00940000157910	ENSGT00940000159823	ENSGT00940000153425.a.a.a.b
Chimpanzee	MODERN SPECIES	17	SLC9B2 (ENSPTRG00000016328) #11	BDH2 (ENSPTRG00000016329) #12	CENPE (ENSPTRG00000016330) #13	TACR3 (ENSPTRG00000016331) #14	ENSPTRG00000043104	CXXC4 (ENSPTRG00000016332) #15	ENSPTRG00000050676	TET2 (ENSPTRG00000016334) #17	PPA2 (ENSPTRG00000016335) #18	ENSPTRG00000048890	ENSPTRG00000047902	ENSPTRG00000045122 #19	ARHGEF38 (ENSPTRG00000016338) #19	INTS12 (ENSPTRG00000016340) #20	GSTCD (ENSPTRG00000016341) #21	NPNT (ENSPTRG00000016343) #22	TBCK (ENSPTRG00000016344) #23	AIMP1 (ENSPTRG00000016345) #24	GIMD1 (ENSPTRG00000049713) #25	DKK2 (ENSPTRG00000016346) #26	ENSPTRG00000040502 #28	PAPSS1 (ENSPTRG00000016347) #29	SGMS2 (ENSPTRG00000048675) #30	CYP2U1 (ENSPTRG00000016349) #31	HADH (ENSPTRG00000016351) #32	LEF1 (ENSPTRG00000016352) #33	RPL34 (ENSPTRG00000016353) ##36	OSTC (ENSPTRG00000024222) #37	ETNPPL (ENSPTRG00000016355)	COL25A1 (ENSPTRG00000016356)	ENSPTRG00000052216
Bonobo	MODERN SPECIES	17	SLC9B1 (ENSPPAG00000029472) #10	SLC9B2 (ENSPPAG00000040623) #11	BDH2 (ENSPPAG00000039330) #12	CENPE (ENSPPAG00000034329) #13	TACR3 (ENSPPAG00000030652) #14	ENSPPAG00000029579	ENSPPAG00000035902 #15	TET2 (ENSPPAG00000033942) #17	PPA2 (ENSPPAG00000042637) #18	ENSPPAG00000039681	ENSPPAG00000034893	ENSPPAG00000037290 #19	ENSPPAG00000027311 #19	INTS12 (ENSPPAG00000040304) #20	GSTCD (ENSPPAG00000039286) #21	NPNT (ENSPPAG00000034385) #22	TBCK (ENSPPAG00000043246) #23	AIMP1 (ENSPPAG00000038355) #24	GIMD1 (ENSPPAG00000034688) #25	DKK2 (ENSPPAG00000038306) #26	ENSPPAG00000042562 #28	PAPSS1 (ENSPPAG00000031578) #29	SGMS2 (ENSPPAG00000041148) #30	CYP2U1 (ENSPPAG00000043345) #31	ENSPPAG00000034253 #32	LEF1 (ENSPPAG00000042910) #33	ENSPPAG00000036097 ##36	ENSPPAG00000043858 #37	ETNPPL (ENSPPAG00000031593)	COL25A1 (ENSPPAG00000027300)	ENSPPAG00000034006
Human	MODERN SPECIES	16	NFKB1 (ENSG00000109320)	MANBA (ENSG00000109323)	UBE2D3 (ENSG00000109332) ##8	CISD2 (ENSG00000145354) #9	SLC9B1 (ENSG00000164037) #10	SLC9B2 (ENSG00000164038) #11	BDH2 (ENSG00000164039) #12	CENPE (ENSG00000138778) #13	TACR3 (ENSG00000169836) #14	CXXC4 (ENSG00000168772) #15	TET2 (ENSG00000168769) #17	PPA2 (ENSG00000138777) #18	ARHGEF38 (ENSG00000236699) #19	INTS12 (ENSG00000138785) #20	GSTCD (ENSG00000138780) #21	NPNT (ENSG00000168743) #22	TBCK (ENSG00000145348) #23	AIMP1 (ENSG00000164022) #24	GIMD1 (ENSG00000250298) #25	DKK2 (ENSG00000155011) #26	PAPSS1 (ENSG00000138801) #29	SGMS2 (ENSG00000164023) #30	CYP2U1 (ENSG00000155016) #31	HADH (ENSG00000138796) #32	LEF1 (ENSG00000138795) #33	RPL34 (ENSG00000109475) #36	OSTC (ENSG00000198856) ##37	ETNPPL (ENSG00000164089)	COL25A1 (ENSG00000188517)	SEC24B (ENSG00000138802)	MCUB (ENSG00000005059)
Gorilla	MODERN SPECIES	17	SLC9B2 (ENSGGOG00000014260) #11	BDH2 (ENSGGOG00000006381) #12	CENPE (ENSGGOG00000015064) #13	ENSGGOG00000043280	TACR3 (ENSGGOG00000002584) #14	ENSGGOG00000036842	ENSGGOG00000028495 #15	TET2 (ENSGGOG00000024687) #17	PPA2 (ENSGGOG00000002175) #18	ENSGGOG00000037035	ENSGGOG00000040418	ENSGGOG00000011388 #19	ENSGGOG00000027331 #19	INTS12 (ENSGGOG00000013501) #20	GSTCD (ENSGGOG00000017102) #21	NPNT (ENSGGOG00000013715) #22	TBCK (ENSGGOG00000005116) #23	AIMP1 (ENSGGOG00000004226) #24	GIMD1 (ENSGGOG00000024079) #25	DKK2 (ENSGGOG00000027525) #26	ENSGGOG00000011380 #28	PAPSS1 (ENSGGOG00000014736) #29	SGMS2 (ENSGGOG00000012598) #30	CYP2U1 (ENSGGOG00000014716) #31	ENSGGOG00000004423 #32	LEF1 (ENSGGOG00000010692) #33	ENSGGOG00000007650 #36	ENSGGOG00000026873 #37	ETNPPL (ENSGGOG00000012323)	COL25A1 (ENSGGOG00000005574)	SEC24B (ENSGGOG00000006806)
Orangutan	MODERN SPECIES	17	ENSPPYG00000034261 ##7	ENSPPYG00000014967 #8	SLC9B1 (ENSPPYG00000014969) #10	ENSPPYG00000014968 #9	SLC9B2 (ENSPPYG00000014970) #11	BDH2 (ENSPPYG00000025868) #12	CENPE (ENSPPYG00000014971) #13	TACR3 (ENSPPYG00000014972) #14	CXXC4 (ENSPPYG00000014973) #15	TET2 (ENSPPYG00000014974) #17	PPA2 (ENSPPYG00000014975) #18	ENSPPYG00000016915	ENSPPYG00000014976 #19	INTS12 (ENSPPYG00000014977) #20	GSTCD (ENSPPYG00000014978) #21	NPNT (ENSPPYG00000014979) #22	TBCK (ENSPPYG00000014980) #23	AIMP1 (ENSPPYG00000014981) #24	GIMD1 (ENSPPYG00000035934) #25	DKK2 (ENSPPYG00000014982) #26	PAPSS1 (ENSPPYG00000014983) #29	SGMS2 (ENSPPYG00000014984) #30	CYP2U1 (ENSPPYG00000014985) #31	ENSPPYG00000014986 #32	LEF1 (ENSPPYG00000014987) #33	ENSPPYG00000032263	ENSPPYG00000014988 #36	ENSPPYG00000030600 #37	ETNPPL (ENSPPYG00000014989)	COL25A1 (ENSPPYG00000014990)	ENSPPYG00000039944
Gibbon	MODERN SPECIES	24	ENSNLEG00000026930 #9	SLC9B1 (ENSNLEG00000026701) #10	SLC9B2 (ENSNLEG00000026685) #11	BDH2 (ENSNLEG00000026601) #12	CENPE (ENSNLEG00000026953) #13	TACR3 (ENSNLEG00000013312) #14	CXXC4 (ENSNLEG00000013306) #15	ENSNLEG00000028470	TET2 (ENSNLEG00000013289) #17	PPA2 (ENSNLEG00000013175) #18	ENSNLEG00000018619	ENSNLEG00000013162 #19	ENSNLEG00000034939 #19	INTS12 (ENSNLEG00000013144) #20	GSTCD (ENSNLEG00000013117) #21	NPNT (ENSNLEG00000013090) #22	TBCK (ENSNLEG00000013047) #23	AIMP1 (ENSNLEG00000033706) #24	GIMD1 (ENSNLEG00000013029) #25	DKK2 (ENSNLEG00000030139) #26	ENSNLEG00000031216 #28	PAPSS1 (ENSNLEG00000034537) #29	SGMS2 (ENSNLEG00000012986) #30	ENSNLEG00000012977 #31	ENSNLEG00000012951 #32	LEF1 (ENSNLEG00000012942) #33	ENSNLEG00000012934 ##36	ENSNLEG00000012929 #37	ETNPPL (ENSNLEG00000012907)	COL25A1 (ENSNLEG00000012906)	ENSNLEG00000033361
Platyrrhini	ANCESTRAL SPECIES	5	ENSGT00940000158625	ENSGT00390000001670	ENSGT00940000153169.A.b.b.a.a.b #8	ENSGT00940000156660 #9	ENSGT00390000013285.b #10	ENSGT00390000013285.a #11	ENSGT00940000156721 #12	ENSGT00940000160597 #13	ENSGT00940000153745.b #14	ENSGT00940000154108.b.a.a #15	ENSGT00940000160003 #17	ENSGT00390000017004.a.a #18	ENSGT00950000183088.a.b.b #19	ENSGT00390000005218.g #20	ENSGT00390000004446 #21	ENSGT00930000150973.B #22	ENSGT00940000158244 #23	ENSGT00940000154950 #24	ENSGT00530000069080 #25	ENSGT00940000162188 #26	ENSGT00390000009613.b #29	ENSGT00940000157370 #30	ENSGT00940000157714 #31	ENSGT00940000159984 #32	ENSGT00940000159660 #33	ENSGT00390000008294.f ##36	ENSGT00390000008294.e.b.a.a ##36	ENSGT00390000001376.ab.b.b #37	ENSGT00940000157910	ENSGT00940000159823	ENSGT00950000182924.B.a.a
Cebidae	ANCESTRAL SPECIES	4	ENSGT00390000001670	ENSGT00940000153169.A.b.b.a.a.b #8	ENSGT00940000156660 #9	ENSGT00390000013285.b #10	ENSGT00390000013285.a #11	ENSGT00940000156721 #12	ENSGT00940000160597 #13	ENSGT00940000153745.b #14	ENSGT00940000154108.b.a.a #15	ENSGT00910000147632	ENSGT00940000160003 #17	ENSGT00390000017004.a.a #18	ENSGT00950000183088.a.b.b #19	ENSGT00390000005218.g #20	ENSGT00390000004446 #21	ENSGT00930000150973.B #22	ENSGT00940000158244 #23	ENSGT00940000154950 #24	ENSGT00530000069080 #25	ENSGT00940000162188 #26	ENSGT00390000009613.b #29	ENSGT00940000157370 #30	ENSGT00940000157714 #31	ENSGT00940000159984 #32	ENSGT00940000159660 #33	ENSGT00390000008294.f ##36	ENSGT00390000008294.e.b.a.a ##36	ENSGT00390000001376.ab.b.b #37	ENSGT00940000157910	ENSGT00940000159823	ENSGT00950000182924.B.a.a
Cebidae_a	ANCESTRAL SPECIES	21	ENSGT00390000001670	ENSGT00940000153169.A.b.b.a.a.b #8	ENSGT00940000156660 #9	ENSGT00390000013285.b #10	ENSGT00390000013285.a #11	ENSGT00940000156721 #12	ENSGT00940000160597 #13	ENSGT00940000153745.b #14	ENSGT00940000154108.b.a.a #15	ENSGT00910000147632	ENSGT00940000160003 #17	ENSGT00390000017004.a.a #18	ENSGT00950000183088.a.b.b #19	ENSGT00390000005218.g #20	ENSGT00390000004446 #21	ENSGT00930000150973.B #22	ENSGT00940000158244 #23	ENSGT00940000154950 #24	ENSGT00530000069080 #25	ENSGT00940000162188 #26	ENSGT00390000009613.b #29	ENSGT00940000157370 #30	ENSGT00940000157714 #31	ENSGT00940000159984 #32	ENSGT00940000159660 #33	ENSGT00390000008294.f ##36	ENSGT00390000008294.e.b.a.a ##36	ENSGT00390000001376.ab.b.b #37	ENSGT00940000157910	ENSGT00940000159823	ENSGT00940000153425.a.a.a.b
Capuchin	MODERN SPECIES	604										TET2 (ENSCCAG00000023562) #17	PPA2 (ENSCCAG00000030431) #18	ENSCCAG00000035442 #19	ARHGEF38 (ENSCCAG00000035098) #19	INTS12 (ENSCCAG00000024881) #20	GSTCD (ENSCCAG00000023452) #21	NPNT (ENSCCAG00000033626) #22
Bolivian squirrel monkey	MODERN SPECIES	75	BDH2 (ENSSBOG00000029174) #12	CENPE (ENSSBOG00000020277) #13	ENSSBOG00000024929	ENSSBOG00000020945	ENSSBOG00000020829	ENSSBOG00000031964	TACR3 (ENSSBOG00000012204) #14	CXXC4 (ENSSBOG00000027167) #15	ENSSBOG00000018487	TET2 (ENSSBOG00000023723) #17	PPA2 (ENSSBOG00000027994) #18	ENSSBOG00000025203 #19	ARHGEF38 (ENSSBOG00000030065) #19	ENSSBOG00000026514 #20	GSTCD (ENSSBOG00000028318) #21	NPNT (ENSSBOG00000003943) #22	TBCK (ENSSBOG00000031928) #23	AIMP1 (ENSSBOG00000035710) #24	GIMD1 (ENSSBOG00000033555) #25	DKK2 (ENSSBOG00000019910) #26	ENSSBOG00000024743	PAPSS1 (ENSSBOG00000002114) #29	SGMS2 (ENSSBOG00000025320) #30	CYP2U1 (ENSSBOG00000030554) #31	ENSSBOG00000015235	HADH (ENSSBOG00000021987) #32	LEF1 (ENSSBOG00000028826) #33	ENSSBOG00000026498 ##36	ENSSBOG00000033335	ENSSBOG00000036162 ##37	ETNPPL (ENSSBOG00000036171)
Marmoset	MODERN SPECIES	15	UBE2D3 (ENSCJAG00000038989) ##8	CISD2 (ENSCJAG00000043402) #9	SLC9B1 (ENSCJAG00000015534) #10	SLC9B2 (ENSCJAG00000015568) #11	BDH2 (ENSCJAG00000039643) #12	CENPE (ENSCJAG00000015594) #13	ENSCJAG00000064372	TACR3 (ENSCJAG00000072109) #14	CXXC4 (ENSCJAG00000047711) #15	ENSCJAG00000072461	TET2 (ENSCJAG00000015737) #17	PPA2 (ENSCJAG00000015715) #18	ENSCJAG00000015747 #19	INTS12 (ENSCJAG00000015751) #20	GSTCD (ENSCJAG00000015763) #21	NPNT (ENSCJAG00000015795) #22	ENSCJAG00000081165	TBCK (ENSCJAG00000015822) #23	AIMP1 (ENSCJAG00000015885) #24	GIMD1 (ENSCJAG00000015900) #25	ENSCJAG00000079824	DKK2 (ENSCJAG00000057432) #26	ENSCJAG00000065541	ENSCJAG00000070747	PAPSS1 (ENSCJAG00000015905) #29	ENSCJAG00000079677	SGMS2 (ENSCJAG00000015928) #30	ENSCJAG00000052711	HADH (ENSCJAG00000015938) #32	CYP2U1 (ENSCJAG00000019545) #31	ENSCJAG00000082049
Mas night monkey	MODERN SPECIES	922	UBE2D3 (ENSANAG00000022072) #8	CISD2 (ENSANAG00000029711) #9	SLC9B1 (ENSANAG00000035905) #10	SLC9B2 (ENSANAG00000021471) #11	BDH2 (ENSANAG00000037831) #12	CENPE (ENSANAG00000029689) #13	TACR3 (ENSANAG00000026054) #14	ENSANAG00000033428	CXXC4 (ENSANAG00000028359) #15	TET2 (ENSANAG00000031123) #17	PPA2 (ENSANAG00000026334) #18	ARHGEF38 (ENSANAG00000032882) #19	INTS12 (ENSANAG00000036142) #20	ENSANAG00000030991	GSTCD (ENSANAG00000037477) #21	NPNT (ENSANAG00000019828) #22	TBCK (ENSANAG00000028672) #23	AIMP1 (ENSANAG00000033416) #24	GIMD1 (ENSANAG00000034671) #25	DKK2 (ENSANAG00000036052) #26	PAPSS1 (ENSANAG00000030435) #29	SGMS2 (ENSANAG00000031769) #30	CYP2U1 (ENSANAG00000021010) #31	HADH (ENSANAG00000024891) #32	LEF1 (ENSANAG00000031040) #33	ENSANAG00000026768 ##36	ENSANAG00000024765 #37	ETNPPL (ENSANAG00000020605)	COL25A1 (ENSANAG00000019852)	SEC24B (ENSANAG00000030045)	ENSANAG00000027362
Tarsier	MODERN SPECIES	3931																NPNT (ENSTSYG00000012250) #22	TBCK (ENSTSYG00000004103) #23	AIMP1 (ENSTSYG00000013788) #24	GIMD1 (ENSTSYG00000036691) #25
Strepsirrhini	ANCESTRAL SPECIES	18	ENSGT00940000158926	ENSGT00940000158625	ENSGT00390000001670	ENSGT00940000153169.A.b.b.a.b ##8	ENSGT00940000156660 #9	ENSGT00390000013285.b #10	ENSGT00390000013285.a #11	ENSGT00940000156721 #12	ENSGT00940000153745.b #14	ENSGT00940000154108.b.a.a #15	ENSGT00940000160003 #17	ENSGT00390000017004.a.a #18	ENSGT00950000183088.a.b.b.z #19	ENSGT00390000005218 #20	ENSGT00390000004446 #21	ENSGT00930000150973.B #22	ENSGT00940000158244 #23	ENSGT00940000154950 #24	ENSGT00530000069080 #25	ENSGT00940000162188 #26	ENSGT00390000009613.b #29	ENSGT00940000157370 #30	ENSGT00940000157714 #31	ENSGT00940000159984 #32	ENSGT00940000159660 #33	ENSGT00390000008294.f ##36	ENSGT00390000001376 #37	ENSGT00940000157910	ENSGT00940000159823	ENSGT00950000182924.B.a.a	ENSGT00940000158059
Bushbaby	MODERN SPECIES	218	NFKB1 (ENSOGAG00000012840)	MANBA (ENSOGAG00000012852)	ENSOGAG00000012860 ##8	CISD2 (ENSOGAG00000012865) #9	ENSOGAG00000031776	SLC9B1 (ENSOGAG00000001454) #10	SLC9B2 (ENSOGAG00000001456) #11	BDH2 (ENSOGAG00000001458) #12	TACR3 (ENSOGAG00000001467) #14	CXXC4 (ENSOGAG00000026362) #15	TET2 (ENSOGAG00000003213) #17	PPA2 (ENSOGAG00000003361) #18	ARHGEF38 (ENSOGAG00000005499) #19	INTS12 (ENSOGAG00000005500) #20	GSTCD (ENSOGAG00000005503) #21	NPNT (ENSOGAG00000005507) #22	TBCK (ENSOGAG00000005510) #23	AIMP1 (ENSOGAG00000002089) #24	GIMD1 (ENSOGAG00000026809) #25	DKK2 (ENSOGAG00000000287) #26	PAPSS1 (ENSOGAG00000013080) #29	SGMS2 (ENSOGAG00000004363) #30	CYP2U1 (ENSOGAG00000015840) #31	HADH (ENSOGAG00000004364) #32	LEF1 (ENSOGAG00000004368) #33	ENSOGAG00000006774 ##36	OSTC (ENSOGAG00000033684) #37	ETNPPL (ENSOGAG00000006777)	COL25A1 (ENSOGAG00000006779)
Lemuriformes	ANCESTRAL SPECIES	22								ENSGT00940000160597 #13	ENSGT00940000153745.b #14	ENSGT00940000154108.b.a.a #15	ENSGT00940000160003 #17	ENSGT00390000017004.a.a #18	ENSGT00950000183088.a.b.b.z #19	ENSGT00390000005218 #20	ENSGT00390000004446 #21	ENSGT00930000150973.B #22	ENSGT00940000158244 #23	ENSGT00940000154950 #24	ENSGT00530000069080 #25	ENSGT00940000162188 #26	ENSGT00390000009613.b #29	ENSGT00940000157370 #30	ENSGT00940000157714 #31	ENSGT00940000159984 #32	ENSGT00940000159660 #33	ENSGT00390000008294.e.b.a.a ##36	ENSGT00390000001376 #37	ENSGT00940000157910	ENSGT00940000159823	ENSGT00950000182924.B.a.a	ENSGT00940000158059
Mouse lemur	MODERN SPECIES	20						CENPE (ENSMICG00000005101) #13	TACR3 (ENSMICG00000046253) #14	ENSMICG00000042331	CXXC4 (ENSMICG00000045183) #15	TET2 (ENSMICG00000035595) #17	ENSMICG00000013570 #18	ENSMICG00000047313 #19	ENSMICG00000010754 #19	INTS12 (ENSMICG00000010760) #20	GSTCD (ENSMICG00000030887) #21	NPNT (ENSMICG00000010776) #22	TBCK (ENSMICG00000010786) #23	AIMP1 (ENSMICG00000010202) #24	GIMD1 (ENSMICG00000045116) #25	DKK2 (ENSMICG00000027157) #26	ENSMICG00000017692	PAPSS1 (ENSMICG00000016262) #29	SGMS2 (ENSMICG00000008740) #30	CYP2U1 (ENSMICG00000012817) #31	HADH (ENSMICG00000012822) #32	LEF1 (ENSMICG00000012833) #33	ENSMICG00000041882 ##36	OSTC (ENSMICG00000002182) #37	ENSMICG00000002187	ENSMICG00000037629	COL25A1 (ENSMICG00000002737)
Lemuriformes_a	ANCESTRAL SPECIES	108									ENSGT00940000153745.b #14	ENSGT00940000154108.b.a.a #15	ENSGT00940000160003 #17	ENSGT00390000017004.a.a #18	ENSGT00950000183088.a.b.b.z #19	ENSGT00390000005218 #20	ENSGT00390000004446 #21	ENSGT00930000150973.B #22	ENSGT00940000158244 #23	ENSGT00940000154950 #24	ENSGT00530000069080 #25	ENSGT00940000162188 #26	ENSGT00390000009613.b #29	ENSGT00940000157370 #30	ENSGT00940000157714 #31	ENSGT00940000159984 #32	ENSGT00940000159660 #33	ENSGT00390000008294.f ##36	ENSGT00390000001376 #37	ENSGT00940000157910	ENSGT00940000159823	ENSGT00950000182924.B.a.a	ENSGT00940000158059
Coquerels sifaka	MODERN SPECIES	612								TACR3 (ENSPCOG00000023839) #14	CXXC4 (ENSPCOG00000018137) #15	TET2 (ENSPCOG00000024542) #17	ENSPCOG00000016895 #18	ENSPCOG00000021618 #19	ENSPCOG00000028147 #19	INTS12 (ENSPCOG00000018476) #20	GSTCD (ENSPCOG00000010589) #21	NPNT (ENSPCOG00000028528) #22	TBCK (ENSPCOG00000017320) #23	AIMP1 (ENSPCOG00000001426) #24	GIMD1 (ENSPCOG00000012757) #25	DKK2 (ENSPCOG00000016835) #26	PAPSS1 (ENSPCOG00000022421) #29	SGMS2 (ENSPCOG00000002586) #30	CYP2U1 (ENSPCOG00000027221) #31	HADH (ENSPCOG00000010610) #32	LEF1 (ENSPCOG00000012815) #33	ENSPCOG00000010384 ##36	OSTC (ENSPCOG00000014109) #37	ETNPPL (ENSPCOG00000007840)	COL25A1 (ENSPCOG00000016653)	SEC24B (ENSPCOG00000015907)	MCUB (ENSPCOG00000021218)
Greater bamboo lemur	MODERN SPECIES	41									ENSPSMG00000008033 #15	TET2 (ENSPSMG00000008057) #17	PPA2 (ENSPSMG00000008130) #18	ENSPSMG00000008154 #19	ENSPSMG00000008160 #19	INTS12 (ENSPSMG00000008195) #20	GSTCD (ENSPSMG00000008240) #21	NPNT (ENSPSMG00000008414) #22	TBCK (ENSPSMG00000008659) #23	AIMP1 (ENSPSMG00000008692) #24	DKK2 (ENSPSMG00000008696) #26	PAPSS1 (ENSPSMG00000008731) #29	ENSPSMG00000008741 #30	CYP2U1 (ENSPSMG00000008757) #31	HADH (ENSPSMG00000008870) #32	LEF1 (ENSPSMG00000009019) #33	ENSPSMG00000009043 ##36	OSTC (ENSPSMG00000009069) #37	COL25A1 (ENSPSMG00000009240)	ETNPPL (ENSPSMG00000009391)	SEC24B (ENSPSMG00000009514)	MCUB (ENSPSMG00000009554)	CASP6 (ENSPSMG00000009580)
Euarchontoglires_A	ANCESTRAL SPECIES	9	ENSGT00940000158625	ENSGT00390000001670	ENSGT00940000153169.A.b.b.a.b ##8	ENSGT00940000156660 #9	ENSGT00390000013285.b #10	ENSGT00390000013285.a #11	ENSGT00940000156721 #12	ENSGT00940000160597 #13	ENSGT00940000153745.b #14	ENSGT00940000154108.b.a.a #15	ENSGT00940000160003 #17	ENSGT00390000017004.a.a #18	ENSGT00950000183088.a.b.b #19	ENSGT00390000005218 #20	ENSGT00390000004446 #21	ENSGT00930000150973.B #22	ENSGT00940000158244 #23	ENSGT00940000154950 #24	ENSGT00530000069080 #25	ENSGT00940000162188 #26	ENSGT00390000009613.b #29	ENSGT00940000157370 #30	ENSGT00940000157714 #31	ENSGT00940000159984 #32	ENSGT00940000159660 #33	ENSGT00390000008294.e.b.a.a ##36	ENSGT00390000008294.f ##36	ENSGT00390000001376 #37	ENSGT00940000157910	ENSGT00940000159823	ENSGT00950000182924.B.a.a
Tree shrew	MODERN SPECIES	1881														INTS12 (ENSTBEG00000009559) #20	GSTCD (ENSTBEG00000001421) #21	NPNT (ENSTBEG00000002734) #22	TBCK (ENSTBEG00000003132) #23	AIMP1 (ENSTBEG00000004412) #24	DKK2 (ENSTBEG00000004691) #26
Glires	ANCESTRAL SPECIES	8	ENSGT00940000158625	ENSGT00390000001670	ENSGT00940000153169.A.b.b.a.b ##8	ENSGT00940000156660 #9	ENSGT00390000013285.b #10	ENSGT00390000013285.a #11	ENSGT00940000156721 #12	ENSGT00940000160597 #13	ENSGT00940000153745.b #14	ENSGT00940000154108.b.a.a #15	ENSGT00940000160003 #17	ENSGT00390000017004.a.a #18	ENSGT00950000183088.a.b.b #19	ENSGT00390000005218 #20	ENSGT00390000004446 #21	ENSGT00930000150973.B #22	ENSGT00940000158244 #23	ENSGT00940000154950 #24	ENSGT00530000069080 #25	ENSGT00940000162188 #26	ENSGT00390000009613.b #29	ENSGT00940000157370 #30	ENSGT00940000157714 #31	ENSGT00940000159984 #32	ENSGT00940000159660 #33	ENSGT00390000008294.e.b.a.a ##36	ENSGT00390000008294.f ##36	ENSGT00390000001376 #37	ENSGT00940000157910	ENSGT00940000159823	ENSGT00950000182924.B.a.a
Rodentia	ANCESTRAL SPECIES	13	ENSGT00940000158625	ENSGT00390000001670	ENSGT00940000153169.A.b.b.a.b ##8	ENSGT00940000156660 #9	ENSGT00390000013285.b #10	ENSGT00390000013285.a #11	ENSGT00940000156721 #12	ENSGT00940000160597 #13	ENSGT00940000153745.b #14	ENSGT00940000154108.b.a.a #15	ENSGT00940000160003 #17	ENSGT00390000017004.a.a #18	ENSGT00950000183088.a.b.b #19	ENSGT00390000005218 #20	ENSGT00390000004446 #21	ENSGT00930000150973.B #22	ENSGT00940000158244 #23	ENSGT00940000154950 #24	ENSGT00530000069080 #25	ENSGT00940000162188 #26	ENSGT00390000009613.b #29	ENSGT00940000157370 #30	ENSGT00940000157714 #31	ENSGT00940000159984 #32	ENSGT00940000159660 #33	ENSGT00390000008294.e.b.a.a ##36	ENSGT00390000008294.e.b.a.b #36	ENSGT00390000001376 #37	ENSGT00940000157910	ENSGT00940000159823	ENSGT00950000182924.B.a.a
Rodentia_B	ANCESTRAL SPECIES	30	ENSGT00940000158625	ENSGT00390000001670	ENSGT00940000153169.A.b.b.a.b ##8	ENSGT00940000156660 #9	ENSGT00390000013285.b #10	ENSGT00390000013285.a #11	ENSGT00940000156721 #12	ENSGT00940000160597 #13	ENSGT00940000153745.b #14	ENSGT00940000154108.b.a.a #15	ENSGT00940000160003 #17	ENSGT00390000017004.a.a #18	ENSGT00950000183088.a.b.b #19	ENSGT00390000005218 #20	ENSGT00390000004446 #21	ENSGT00930000150973.B #22	ENSGT00940000158244 #23	ENSGT00940000154950 #24	ENSGT00530000069080 #25	ENSGT00940000162188 #26	ENSGT00390000009613.b #29	ENSGT00940000157370 #30	ENSGT00940000157714 #31	ENSGT00940000159984 #32	ENSGT00940000159660 #33	ENSGT00390000008294.e.b.a.a ##36	ENSGT00390000008294.e.b.a.b #36	ENSGT00390000001376 #37	ENSGT00940000157910	ENSGT00940000159823	ENSGT00950000182924.B.a.a
Myomorpha	ANCESTRAL SPECIES	42	ENSGT00940000158625	ENSGT00390000001670	ENSGT00940000153169.A.b.b.a.b ##8	ENSGT00940000156660 #9	ENSGT00390000013285.b #10	ENSGT00390000013285.a #11	ENSGT00940000156721 #12	ENSGT00940000160597 #13	ENSGT00940000153745.b #14	ENSGT00940000154108.b.a.a #15	ENSGT00940000160003 #17	ENSGT00390000017004.a.a #18	ENSGT00950000183088.a.b.b #19	ENSGT00390000005218 #20	ENSGT00390000004446 #21	ENSGT00930000150973.B #22	ENSGT00940000158244 #23	ENSGT00940000154950 #24	ENSGT00530000069080 #25	ENSGT00940000162188 #26	ENSGT00390000009613.b #29	ENSGT00940000157370 #30	ENSGT00940000157714 #31	ENSGT00940000159984 #32	ENSGT00940000159660 #33	ENSGT00390000008294.e.b.a.a ##36	ENSGT00390000008294.e.b.a.b #36	ENSGT00390000001376 #37	ENSGT00940000157910	ENSGT00940000159823	ENSGT00950000182924.B.a.a
Muroidea	ANCESTRAL SPECIES	53	ENSGT00940000158625	ENSGT00390000001670	ENSGT00940000153169.A.b.b.a.b ##8	ENSGT00940000156660 #9	ENSGT00390000013285.b #10	ENSGT00390000013285.a #11	ENSGT00940000156721 #12	ENSGT00940000160597 #13	ENSGT00940000153745.b #14	ENSGT00940000154108.b.a.a #15	ENSGT00940000160003 #17	ENSGT00390000017004.a.a #18	ENSGT00950000183088.a.b.b #19	ENSGT00390000005218 #20	ENSGT00390000004446 #21	ENSGT00930000150973.B #22	ENSGT00940000158244 #23	ENSGT00940000154950 #24	ENSGT00530000069080 #25	ENSGT00940000162188 #26	ENSGT00390000009613.b #29	ENSGT00940000157370 #30	ENSGT00940000157714 #31	ENSGT00940000159984 #32	ENSGT00940000159660 #33	ENSGT00390000008294.e.b.a.a ##36	ENSGT00390000008294.e.b.a.b #36	ENSGT00390000001376 #37	ENSGT00940000157910	ENSGT00940000159823	ENSGT00950000182924.B.a.a
Muroidea_A	ANCESTRAL SPECIES	5	ENSGT00940000158625	ENSGT00390000001670	ENSGT00940000153169.A.b.b.a.b ##8	ENSGT00940000156660 #9	ENSGT00390000013285.b #10	ENSGT00390000013285.a #11	ENSGT00940000156721 #12	ENSGT00940000160597 #13	ENSGT00940000153745.b #14	ENSGT00940000154108.b.a.a #15	ENSGT00940000160003 #17	ENSGT00390000017004.a.a #18	ENSGT00950000183088.a.b.b #19	ENSGT00390000005218 #20	ENSGT00390000004446 #21	ENSGT00930000150973.B #22	ENSGT00940000158244 #23	ENSGT00940000154950 #24	ENSGT00530000069080 #25	ENSGT00940000162188 #26	ENSGT00390000009613.b #29	ENSGT00940000157370 #30	ENSGT00940000157714 #31	ENSGT00940000159984 #32	ENSGT00940000159660 #33	ENSGT00390000008294.e.b.a.b #36	ENSGT00390000001376 #37	ENSGT00940000157910	ENSGT00940000159823	ENSGT00950000182924.B.a.a	ENSGT00940000158059
Cricetidae	ANCESTRAL SPECIES	6	ENSGT00940000158625	ENSGT00390000001670	ENSGT00940000153169.A.b.b.a.b ##8	ENSGT00940000156660 #9	ENSGT00390000013285.b #10	ENSGT00390000013285.a #11	ENSGT00940000156721 #12	ENSGT00940000160597 #13	ENSGT00940000153745.b #14	ENSGT00940000154108.b.a.a #15	ENSGT00940000160003 #17	ENSGT00390000017004.a.a #18	ENSGT00950000183088.a.b.b #19	ENSGT00390000005218 #20	ENSGT00390000004446 #21	ENSGT00930000150973.B #22	ENSGT00940000158244 #23	ENSGT00940000154950 #24	ENSGT00530000069080 #25	ENSGT00940000162188 #26	ENSGT00390000009613.b #29	ENSGT00940000157370 #30	ENSGT00940000157714 #31	ENSGT00940000159984 #32	ENSGT00940000159660 #33	ENSGT00390000008294.e.b.a.a ##36	ENSGT00390000001376 #37	ENSGT00940000157910	ENSGT00940000159823	ENSGT00950000182924.B.a.a	ENSGT00940000158059
Cricetinae	ANCESTRAL SPECIES	12	ENSGT00940000158625	ENSGT00390000001670	ENSGT00940000153169.A.b.b.a.b ##8	ENSGT00940000156660 #9	ENSGT00390000013285.b #10	ENSGT00390000013285.a #11	ENSGT00940000156721 #12	ENSGT00940000160597 #13	ENSGT00940000153745.b #14	ENSGT00940000154108.b.a.a #15	ENSGT00940000160003 #17	ENSGT00390000017004.a.a #18	ENSGT00950000183088.a.b.b #19	ENSGT00390000005218 #20	ENSGT00390000004446 #21	ENSGT00930000150973.B #22	ENSGT00940000158244 #23	ENSGT00940000154950 #24	ENSGT00530000069080 #25	ENSGT00940000162188 #26	ENSGT00390000009613.b #29	ENSGT00940000157370 #30	ENSGT00940000157714 #31	ENSGT00940000159984 #32	ENSGT00940000159660 #33	ENSGT00390000008294.e.b.a.a ##36	ENSGT00390000001376 #37	ENSGT00940000157910	ENSGT00940000159823	ENSGT00950000182924.B.a.a	ENSGT00940000158059
Chinese hamster chok1gshd	MODERN SPECIES	66	Manba (ENSCGRG00001023079)	Ube2d3 (ENSCGRG00001015878) ##8	Cisd2 (ENSCGRG00001009884) #9	Slc9b1 (ENSCGRG00001019186) #10	Slc9b2 (ENSCGRG00001013085) #11	ENSCGRG00001008342 #12	ENSCGRG00001000064 #12	Cenpe (ENSCGRG00001024643) #13	Tacr3 (ENSCGRG00001001027) #14	Cxxc4 (ENSCGRG00001012155) #15	ENSCGRG00001016201 #17	Ppa2 (ENSCGRG00001013135) #18	Arhgef38 (ENSCGRG00001012615) #19	Ints12 (ENSCGRG00001017648) #20	Gstcd (ENSCGRG00001013678) #21	Npnt (ENSCGRG00001011234) #22	Tbck (ENSCGRG00001014137) #23	Aimp1 (ENSCGRG00001012622) #24	Gimd1 (ENSCGRG00001011642) #25	Dkk2 (ENSCGRG00001015913) #26	Papss1 (ENSCGRG00001022641) #29	Sgms2 (ENSCGRG00001022561) #30	Cyp2u1 (ENSCGRG00001000440) #31	Hadh (ENSCGRG00001022551) #32	Lef1 (ENSCGRG00001022697) #33	Rpl34 (ENSCGRG00001011923) #36	ENSCGRG00001012885 #37	Etnppl (ENSCGRG00001001866)	Col25a1 (ENSCGRG00001016091)	Sec24b (ENSCGRG00001011377)	Mcub (ENSCGRG00001013554)
Golden Hamster	MODERN SPECIES	736	Ube2d3 (ENSMAUG00000008002) ##8	Cisd2 (ENSMAUG00000018110) #9	ENSMAUG00000018374	Slc9b1 (ENSMAUG00000000272) #10	Slc9b2 (ENSMAUG00000000640) #11	Bdh2 (ENSMAUG00000002880) #12	Cenpe (ENSMAUG00000009004) #13	Tacr3 (ENSMAUG00000004511) #14	Cxxc4 (ENSMAUG00000007790) #15	ENSMAUG00000016150	Tet2 (ENSMAUG00000009273) #17	Ppa2 (ENSMAUG00000011715) #18	Arhgef38 (ENSMAUG00000000124) #19	ENSMAUG00000015392 #20	Gstcd (ENSMAUG00000012628) #21	Npnt (ENSMAUG00000007621) #22	Tbck (ENSMAUG00000014349) #23	ENSMAUG00000018723	Gimd1 (ENSMAUG00000019274) #25	Dkk2 (ENSMAUG00000000149) #26
Cricetidae_B	ANCESTRAL SPECIES	3	ENSGT00940000158625	ENSGT00390000001670	ENSGT00940000153169.A.b.b.a.b ##8	ENSGT00940000156660 #9	ENSGT00390000013285.b #10	ENSGT00390000013285.a #11	ENSGT00940000156721 #12	ENSGT00940000160597 #13	ENSGT00940000153745.b #14	ENSGT00940000154108.b.a.a #15	ENSGT00940000160003 #17	ENSGT00390000017004.a.a #18	ENSGT00950000183088.a.b.b #19	ENSGT00390000005218 #20	ENSGT00390000004446 #21	ENSGT00930000150973.B #22	ENSGT00940000158244 #23	ENSGT00940000154950 #24	ENSGT00530000069080 #25	ENSGT00940000162188 #26	ENSGT00390000009613.b #29	ENSGT00940000157370 #30	ENSGT00940000157714 #31	ENSGT00940000159984 #32	ENSGT00940000159660 #33	ENSGT00390000008294.e.b.a.a ##36	ENSGT00390000001376 #37	ENSGT00940000157910	ENSGT00940000159823	ENSGT00950000182924.B.a.a	ENSGT00940000158059
Prairie vole	MODERN SPECIES	8	Ube2d3 (ENSMOCG00000016276) ##8	Cisd2 (ENSMOCG00000010945) #9	Slc9b1 (ENSMOCG00000020773) #10	Slc9b2 (ENSMOCG00000010054) #11	Bdh2 (ENSMOCG00000006266) #12	Cenpe (ENSMOCG00000017832) #13	ENSMOCG00000008569	Tacr3 (ENSMOCG00000010143) #14	Cxxc4 (ENSMOCG00000003388) #15	Tet2 (ENSMOCG00000019397) #17	Ppa2 (ENSMOCG00000021031) #18	ENSMOCG00000010005	Arhgef38 (ENSMOCG00000000958) #19	Ints12 (ENSMOCG00000014627) #20	Gstcd (ENSMOCG00000012500) #21	Npnt (ENSMOCG00000016277) #22	Tbck (ENSMOCG00000000214) #23	ENSMOCG00000001103 #24	Gimd1 (ENSMOCG00000017308) #25	Dkk2 (ENSMOCG00000016432) #26	ENSMOCG00000013454	Papss1 (ENSMOCG00000012328) #29	Sgms2 (ENSMOCG00000008205) #30	Cyp2u1 (ENSMOCG00000012427) #31	Hadh (ENSMOCG00000002166) #32	Lef1 (ENSMOCG00000017897) #33	ENSMOCG00000012371 ##36	Ostc (ENSMOCG00000003130) #37	Etnppl (ENSMOCG00000013627)	Col25a1 (ENSMOCG00000005127)	Sec24b (ENSMOCG00000010749)
Northern American deer mouse	MODERN SPECIES	19	Ube2d3 (ENSPEMG00000024661) ##8	Cisd2 (ENSPEMG00000012367) #9	Slc9b1 (ENSPEMG00000015739) #10	Slc9b2 (ENSPEMG00000018580) #11	Bdh2 (ENSPEMG00000008358) #12	Cenpe (ENSPEMG00000003135) #13	ENSPEMG00000025985	Tacr3 (ENSPEMG00000026875) #14	Cxxc4 (ENSPEMG00000024400) #15	Tet2 (ENSPEMG00000003379) #17	ENSPEMG00000014121	Ppa2 (ENSPEMG00000015922) #18	Arhgef38 (ENSPEMG00000008305) #19	Ints12 (ENSPEMG00000005181) #20	Gstcd (ENSPEMG00000007441) #21	Npnt (ENSPEMG00000008059) #22	Tbck (ENSPEMG00000008071) #23	Aimp1 (ENSPEMG00000003730) #24	Gimd1 (ENSPEMG00000010104) #25	Dkk2 (ENSPEMG00000024321) #26	Papss1 (ENSPEMG00000008733) #29	Sgms2 (ENSPEMG00000027110) #30	Cyp2u1 (ENSPEMG00000012213) #31	Hadh (ENSPEMG00000020330) #32	Lef1 (ENSPEMG00000011796) #33	ENSPEMG00000010540 ##36	Ostc (ENSPEMG00000001349) #37	Etnppl (ENSPEMG00000009696)	Col25a1 (ENSPEMG00000000474)	Sec24b (ENSPEMG00000016956)	Mcub (ENSPEMG00000008411)
Murinae	ANCESTRAL SPECIES	5	ENSGT00390000001670	ENSGT00940000153169.A.b.b.a.a.a.a.l ##8	ENSGT00940000153169.A.b.b.a.b ##8	ENSGT00940000156660 #9	ENSGT00390000013285.b #10	ENSGT00390000013285.a #11	ENSGT00940000156721 #12	ENSGT00940000160597 #13	ENSGT00940000153745.b #14	ENSGT00940000154108.b.a.a #15	ENSGT00940000160003 #17	ENSGT00390000017004.a.a #18	ENSGT00950000183088.a.b.b #19	ENSGT00390000005218 #20	ENSGT00390000004446 #21	ENSGT00930000150973.B #22	ENSGT00940000158244 #23	ENSGT00940000154950 #24	ENSGT00530000069080 #25	ENSGT00940000162188 #26	ENSGT00390000009613.b #29	ENSGT00940000157370 #30	ENSGT00940000157714 #31	ENSGT00940000159984 #32	ENSGT00940000159660 #33	ENSGT00390000008294.e.b.a.b #36	ENSGT00390000001376 #37	ENSGT00940000157910	ENSGT00940000159823	ENSGT00950000182924.B.a.a	ENSGT00940000158059
Mus	ANCESTRAL SPECIES	7	ENSGT00390000001670	ENSGT00940000153169.A.b.b.a.a.a.a.l.b ##8	ENSGT00940000153169.A.b.b.a.b ##8	ENSGT00940000156660 #9	ENSGT00390000013285.b #10	ENSGT00390000013285.a #11	ENSGT00940000156721 #12	ENSGT00940000160597 #13	ENSGT00940000153745.b #14	ENSGT00940000154108.b.a.a #15	ENSGT00940000160003 #17	ENSGT00390000017004.a.a #18	ENSGT00950000183088.a.b.b #19	ENSGT00390000005218 #20	ENSGT00390000004446 #21	ENSGT00930000150973.B #22	ENSGT00940000158244 #23	ENSGT00940000154950 #24	ENSGT00530000069080 #25	ENSGT00940000162188 #26	ENSGT00390000009613.b #29	ENSGT00940000157370 #30	ENSGT00940000157714 #31	ENSGT00940000159984 #32	ENSGT00940000159660 #33	ENSGT00390000008294.e.b.a.b #36	ENSGT00390000001376 #37	ENSGT00940000157910	ENSGT00940000159823	ENSGT00950000182924.B.a.a	ENSGT00940000158059
Mus_A	ANCESTRAL SPECIES	9	ENSGT00390000001670	ENSGT00940000153169.A.b.b.a.a.a.a.l.b ##8	ENSGT00940000153169.A.b.b.a.b ##8	ENSGT00940000156660 #9	ENSGT00390000013285.b #10	ENSGT00390000013285.a #11	ENSGT00940000156721 #12	ENSGT00940000160597 #13	ENSGT00940000153745.b #14	ENSGT00940000154108.b.a.a #15	ENSGT00940000160003 #17	ENSGT00390000017004.a.a #18	ENSGT00950000183088.a.b.b #19	ENSGT00390000005218 #20	ENSGT00390000004446 #21	ENSGT00930000150973.B #22	ENSGT00940000158244 #23	ENSGT00940000154950 #24	ENSGT00530000069080 #25	ENSGT00940000162188 #26	ENSGT00390000009613.b #29	ENSGT00940000157370 #30	ENSGT00940000157714 #31	ENSGT00940000159984 #32	ENSGT00940000159660 #33	ENSGT00390000008294.e.b.a.b #36	ENSGT00390000001376 #37	ENSGT00940000157910	ENSGT00940000159823	ENSGT00950000182924.B.a.a	ENSGT00940000158059
Ryukyu mouse	MODERN SPECIES	12	Nfkb1 (MGP_CAROLIEiJ_G0025661)	Manba (MGP_CAROLIEiJ_G0025660)	MGP_CAROLIEiJ_G0025659 ##8	Cisd2 (MGP_CAROLIEiJ_G0025658) #9	Slc9b1 (MGP_CAROLIEiJ_G0025657) #10	Slc9b2 (MGP_CAROLIEiJ_G0025656) #11	Bdh2 (MGP_CAROLIEiJ_G0025655) #12	Cenpe (MGP_CAROLIEiJ_G0025654) #13	Tacr3 (MGP_CAROLIEiJ_G0025653) #14	Cxxc4 (MGP_CAROLIEiJ_G0025652) #15	Tet2 (MGP_CAROLIEiJ_G0025651) #17	Ppa2 (MGP_CAROLIEiJ_G0025650) #18	Arhgef38 (MGP_CAROLIEiJ_G0025649) #19	Ints12 (MGP_CAROLIEiJ_G0025648) #20	Gstcd (MGP_CAROLIEiJ_G0025647) #21	Npnt (MGP_CAROLIEiJ_G0025646) #22	Tbck (MGP_CAROLIEiJ_G0025645) #23	Aimp1 (MGP_CAROLIEiJ_G0025644) #24	Gimd1 (MGP_CAROLIEiJ_G0025643) #25	Dkk2 (MGP_CAROLIEiJ_G0025642) #26	Papss1 (MGP_CAROLIEiJ_G0025641) #29	Sgms2 (MGP_CAROLIEiJ_G0025640) #30	Cyp2u1 (MGP_CAROLIEiJ_G0025639) #31	Hadh (MGP_CAROLIEiJ_G0025638) #32	Lef1 (MGP_CAROLIEiJ_G0025637) #33	Rpl34 (MGP_CAROLIEiJ_G0025636) #36	Ostc (MGP_CAROLIEiJ_G0025635) #37	Etnppl (MGP_CAROLIEiJ_G0025634)	Col25a1 (MGP_CAROLIEiJ_G0025633)	Sec24b (MGP_CAROLIEiJ_G0025632)	Mcub (MGP_CAROLIEiJ_G0025631)
Mus_B	ANCESTRAL SPECIES	8	ENSGT00940000158625	ENSGT00390000001670	ENSGT00940000153169.A.b.b.a.b ##8	ENSGT00940000156660 #9	ENSGT00390000013285.b #10	ENSGT00390000013285.a #11	ENSGT00940000156721 #12	ENSGT00940000160597 #13	ENSGT00940000153745.b #14	ENSGT00940000154108.b.a.a #15	ENSGT00940000160003 #17	ENSGT00390000017004.a.a #18	ENSGT00950000183088.a.b.b #19	ENSGT00390000005218 #20	ENSGT00390000004446 #21	ENSGT00930000150973.B #22	ENSGT00940000158244 #23	ENSGT00940000154950 #24	ENSGT00530000069080 #25	ENSGT00940000162188 #26	ENSGT00390000009613.b #29	ENSGT00940000157370 #30	ENSGT00940000157714 #31	ENSGT00940000159984 #32	ENSGT00940000159660 #33	ENSGT00390000008294.e.b.a.b #36	ENSGT00390000001376 #37	ENSGT00940000157910	ENSGT00940000159823	ENSGT00950000182924.B.a.a	ENSGT00940000158059
Mouse	MODERN SPECIES	12	Nfkb1 (ENSMUSG00000028163)	Manba (ENSMUSG00000028164)	Ube2d3 (ENSMUSG00000078578) ##8	Cisd2 (ENSMUSG00000028165) #9	Slc9b1 (ENSMUSG00000050150) #10	Slc9b2 (ENSMUSG00000037994) #11	Bdh2 (ENSMUSG00000028167) #12	Cenpe (ENSMUSG00000045328) #13	Tacr3 (ENSMUSG00000028172) #14	Cxxc4 (ENSMUSG00000044365) #15	Tet2 (ENSMUSG00000040943) #17	Ppa2 (ENSMUSG00000028013) #18	Arhgef38 (ENSMUSG00000040969) #19	Ints12 (ENSMUSG00000028016) #20	Gstcd (ENSMUSG00000028018) #21	Npnt (ENSMUSG00000040998) #22	Tbck (ENSMUSG00000028030) #23	Aimp1 (ENSMUSG00000028029) #24	Gimd1 (ENSMUSG00000091721) #25	Dkk2 (ENSMUSG00000028031) #26	Papss1 (ENSMUSG00000028032) #29	Sgms2 (ENSMUSG00000050931) #30	Cyp2u1 (ENSMUSG00000027983) #31	Hadh (ENSMUSG00000027984) #32	Lef1 (ENSMUSG00000027985) #33	Rpl34 (ENSMUSG00000062006) #36	Ostc (ENSMUSG00000041084) #37	Etnppl (ENSMUSG00000019232)	Col25a1 (ENSMUSG00000058897)	Sec24b (ENSMUSG00000001052)	Mcub (ENSMUSG00000027994)
Mus_C	ANCESTRAL SPECIES	6	ENSGT00390000001670	ENSGT00940000153169.A.b.b.a.a.a.a.l.b ##8	ENSGT00940000153169.A.b.b.a.b ##8	ENSGT00940000156660 #9	ENSGT00390000013285.b #10	ENSGT00390000013285.a #11	ENSGT00940000156721 #12	ENSGT00940000160597 #13	ENSGT00940000153745.b #14	ENSGT00940000154108.b.a.a #15	ENSGT00940000160003 #17	ENSGT00390000017004.a.a #18	ENSGT00950000183088.a.b.b #19	ENSGT00390000005218 #20	ENSGT00390000004446 #21	ENSGT00930000150973.B #22	ENSGT00940000158244 #23	ENSGT00940000154950 #24	ENSGT00530000069080 #25	ENSGT00940000162188 #26	ENSGT00390000009613.b #29	ENSGT00940000157370 #30	ENSGT00940000157714 #31	ENSGT00940000159984 #32	ENSGT00940000159660 #33	ENSGT00390000008294.e.b.a.b #36	ENSGT00390000001376 #37	ENSGT00940000157910	ENSGT00940000159823	ENSGT00950000182924.B.a.a	ENSGT00940000158059
spretus	MODERN SPECIES	12	Nfkb1 (MGP_SPRETEiJ_G0026615)	Manba (MGP_SPRETEiJ_G0026614)	MGP_SPRETEiJ_G0026613 ##8	Cisd2 (MGP_SPRETEiJ_G0026612) #9	Slc9b1 (MGP_SPRETEiJ_G0026611) #10	Slc9b2 (MGP_SPRETEiJ_G0026610) #11	Bdh2 (MGP_SPRETEiJ_G0026609) #12	Cenpe (MGP_SPRETEiJ_G0026608) #13	Tacr3 (MGP_SPRETEiJ_G0026607) #14	MGP_SPRETEiJ_G0026606 #15	Tet2 (MGP_SPRETEiJ_G0026604) #17	Ppa2 (MGP_SPRETEiJ_G0026603) #18	Arhgef38 (MGP_SPRETEiJ_G0026602) #19	Ints12 (MGP_SPRETEiJ_G0026601) #20	Gstcd (MGP_SPRETEiJ_G0026600) #21	Npnt (MGP_SPRETEiJ_G0026599) #22	Tbck (MGP_SPRETEiJ_G0026598) #23	Aimp1 (MGP_SPRETEiJ_G0026597) #24	Gimd1 (MGP_SPRETEiJ_G0026596) #25	Dkk2 (MGP_SPRETEiJ_G0026595) #26	Papss1 (MGP_SPRETEiJ_G0026594) #29	Sgms2 (MGP_SPRETEiJ_G0026593) #30	Cyp2u1 (MGP_SPRETEiJ_G0026592) #31	Hadh (MGP_SPRETEiJ_G0026591) #32	Lef1 (MGP_SPRETEiJ_G0026590) #33	Rpl34 (MGP_SPRETEiJ_G0026589) #36	Ostc (MGP_SPRETEiJ_G0026588) #37	Etnppl (MGP_SPRETEiJ_G0026587)	Col25a1 (MGP_SPRETEiJ_G0026586)	Sec24b (MGP_SPRETEiJ_G0026585)	Mcub (MGP_SPRETEiJ_G0026584)
Steppe mouse	MODERN SPECIES	3018										ENSMSIG00000031848	Tet2 (ENSMSIG00000031845) #17	Ppa2 (ENSMSIG00000031843) #18	Arhgef38 (ENSMSIG00000031842) #19	Ints12 (ENSMSIG00000031838) #20	Gstcd (ENSMSIG00000031836) #21	Npnt (ENSMSIG00000031811) #22	Tbck (ENSMSIG00000031809) #23	Aimp1 (ENSMSIG00000031808) #24	Gimd1 (ENSMSIG00000031807) #25	Dkk2 (ENSMSIG00000031805) #26
Shrew mouse	MODERN SPECIES	17	MGP_PahariEiJ_G0027110	Manba (MGP_PahariEiJ_G0027109)	MGP_PahariEiJ_G0027108 ##8	Cisd2 (MGP_PahariEiJ_G0027107) #9	Slc9b1 (MGP_PahariEiJ_G0027106) #10	Slc9b2 (MGP_PahariEiJ_G0027105) #11	Bdh2 (MGP_PahariEiJ_G0027104) #12	Cenpe (MGP_PahariEiJ_G0027103) #13	Tacr3 (MGP_PahariEiJ_G0027102) #14	Cxxc4 (MGP_PahariEiJ_G0027101) #15	Tet2 (MGP_PahariEiJ_G0027100) #17	Ppa2 (MGP_PahariEiJ_G0027099) #18	Arhgef38 (MGP_PahariEiJ_G0027098) #19	Ints12 (MGP_PahariEiJ_G0027097) #20	Gstcd (MGP_PahariEiJ_G0027096) #21	Npnt (MGP_PahariEiJ_G0027095) #22	Tbck (MGP_PahariEiJ_G0027094) #23	Aimp1 (MGP_PahariEiJ_G0027093) #24	Gimd1 (MGP_PahariEiJ_G0027092) #25	Dkk2 (MGP_PahariEiJ_G0027091) #26	Papss1 (MGP_PahariEiJ_G0027090) #29	Sgms2 (MGP_PahariEiJ_G0027089) #30	Cyp2u1 (MGP_PahariEiJ_G0027088) #31	Hadh (MGP_PahariEiJ_G0027087) #32	Lef1 (MGP_PahariEiJ_G0027086) #33	Rpl34 (MGP_PahariEiJ_G0027085) ##36	Ostc (MGP_PahariEiJ_G0027084) #37	Etnppl (MGP_PahariEiJ_G0027083)	Col25a1 (MGP_PahariEiJ_G0027082)	Sec24b (MGP_PahariEiJ_G0027081)	Mcub (MGP_PahariEiJ_G0027080)
Rat	MODERN SPECIES	11	Manba (ENSRNOG00000052247)	Ube2d3 (ENSRNOG00000013741) ##8	Cisd2 (ENSRNOG00000048258) #9	Bdh2 (ENSRNOG00000014490) #12	Cenpe (ENSRNOG00000009339) #13	Tacr3 (ENSRNOG00000009372) #14	Cxxc4 (ENSRNOG00000045764) #15	ENSRNOG00000065234	ENSRNOG00000067100	Tet2 (ENSRNOG00000023579) #17	Gpbp1l2 (ENSRNOG00000016336)	Ppa2 (ENSRNOG00000012091) #18	Arhgef38 (ENSRNOG00000023965) #19	Ints12 (ENSRNOG00000011844) #20	Gstcd (ENSRNOG00000011669) #21	Npnt (ENSRNOG00000052873) #22	Tbck (ENSRNOG00000011454) #23	Aimp1 (ENSRNOG00000011384) #24	Gimd1 (ENSRNOG00000042721) #25	ENSRNOG00000066474	Dkk2 (ENSRNOG00000011360) #26	Papss1 (ENSRNOG00000011311) #29	Sgms2 (ENSRNOG00000011284) #30	Cyp2u1 (ENSRNOG00000011053) #31	Hadh (ENSRNOG00000010697) #32	Lef1 (ENSRNOG00000010121) #33	AABR07013412.1 (ENSRNOG00000055035)	LOC108350290 (ENSRNOG00000069431)	Rpl34 (ENSRNOG00000016387) ##36	Ostc (ENSRNOG00000023322) #37	Etnppl (ENSRNOG00000045743)
Upper Galilee mountains blind mole rat	MODERN SPECIES	1137									Cxxc4 (ENSNGAG00000017353) #15	Tet2 (ENSNGAG00000016205) #17	Ppa2 (ENSNGAG00000006016) #18	Arhgef38 (ENSNGAG00000017312) #19	Ints12 (ENSNGAG00000015890) #20	ENSNGAG00000012050	Gstcd (ENSNGAG00000011570) #21	Npnt (ENSNGAG00000000713) #22	ENSNGAG00000014065	Tbck (ENSNGAG00000010808) #23	ENSNGAG00000007787	Gimd1 (ENSNGAG00000017371) #25	Dkk2 (ENSNGAG00000016311) #26
Lesser Egyptian jerboa	MODERN SPECIES	96	Manba (ENSJJAG00000012511)	Ube2d3 (ENSJJAG00000000457) ##8	Cisd2 (ENSJJAG00000005022) #9	ENSJJAG00000014490	Slc9b2 (ENSJJAG00000008729) #11	Bdh2 (ENSJJAG00000014275) #12	ENSJJAG00000015412	Tacr3 (ENSJJAG00000023236) #14	Cxxc4 (ENSJJAG00000011738) #15	ENSJJAG00000017297	Tet2 (ENSJJAG00000019545) #17	Ppa2 (ENSJJAG00000001408) #18	Arhgef38 (ENSJJAG00000014797) #19	ENSJJAG00000015299 #20	Gstcd (ENSJJAG00000021904) #21	Npnt (ENSJJAG00000007539) #22	ENSJJAG00000014460	Aimp1 (ENSJJAG00000016873) #24	Gimd1 (ENSJJAG00000017692) #25	Lrp12 (ENSJJAG00000020477)	Dpys (ENSJJAG00000008928)	Dcstamp (ENSJJAG00000011201)	Rims2 (ENSJJAG00000013990)	ENSJJAG00000000607	ENSJJAG00000001990	Slc25a32 (ENSJJAG00000001066)	ENSJJAG00000007630	ENSJJAG00000009949	Fzd6 (ENSJJAG00000012386)	Baalc (ENSJJAG00000016925)	Atp6v1c1 (ENSJJAG00000016526)
Kangaroo rat	MODERN SPECIES	389	Nfkb1 (ENSDORG00000007447)	Manba (ENSDORG00000006758)	Ube2d3 (ENSDORG00000028574) ##8	Cisd2 (ENSDORG00000029271) #9	Slc9b1 (ENSDORG00000023799) #10	Slc9b2 (ENSDORG00000000659) #11	Bdh2 (ENSDORG00000029728) #12	Cenpe (ENSDORG00000002271) #13	Tacr3 (ENSDORG00000010681) #14	ENSDORG00000003728 #15	Ppa2 (ENSDORG00000013455) #18	ENSDORG00000027089	Arhgef38 (ENSDORG00000029430) #19	Ints12 (ENSDORG00000023765) #20	Gstcd (ENSDORG00000009964) #21	Npnt (ENSDORG00000009968) #22	ENSDORG00000012577 #23	ENSDORG00000005018 #24	Gimd1 (ENSDORG00000026034) #25	Dkk2 (ENSDORG00000025181) #26	Papss1 (ENSDORG00000010043) #29	Sgms2 (ENSDORG00000010107) #30	Cyp2u1 (ENSDORG00000010109) #31	Hadh (ENSDORG00000015829) #32	Lef1 (ENSDORG00000007694) #33	Rpl34 (ENSDORG00000025054) ##36	Ostc (ENSDORG00000027386) #37	Etnppl (ENSDORG00000004115)	Col25a1 (ENSDORG00000004118)	ENSDORG00000024600	Sec24b (ENSDORG00000003039)
Rodentia_A	ANCESTRAL SPECIES	24	ENSGT00940000158625	ENSGT00390000001670	ENSGT00940000153169.A.b.b.a.b ##8	ENSGT00940000156660 #9	ENSGT00390000013285.b #10	ENSGT00390000013285.a #11	ENSGT00940000156721 #12	ENSGT00940000160597 #13	ENSGT00940000153745.b #14	ENSGT00940000154108.b.a.a #15	ENSGT00940000160003 #17	ENSGT00390000017004.a.a #18	ENSGT00950000183088.a.b.b #19	ENSGT00390000005218 #20	ENSGT00390000004446 #21	ENSGT00930000150973.B #22	ENSGT00940000158244 #23	ENSGT00940000154950 #24	ENSGT00530000069080 #25	ENSGT00940000162188 #26	ENSGT00390000009613.b #29	ENSGT00940000157370 #30	ENSGT00940000157714 #31	ENSGT00940000159984 #32	ENSGT00940000159660 #33	ENSGT00390000008294.e.b.a.a ##36	ENSGT00390000008294.f ##36	ENSGT00390000001376 #37	ENSGT00940000157910	ENSGT00940000159823	ENSGT00950000182924.B.a.a
Sciuridae	ANCESTRAL SPECIES	43	ENSGT00940000158625	ENSGT00390000001670	ENSGT00940000153169.A.b.b.a.b ##8	ENSGT00940000156660 #9	ENSGT00390000013285.b #10	ENSGT00390000013285.a #11	ENSGT00940000156721 #12	ENSGT00940000160597 #13	ENSGT00940000153745.b #14	ENSGT00940000154108.b.a.a #15	ENSGT00940000160003 #17	ENSGT00390000017004.a.a #18	ENSGT00950000183088.a.b.b #19	ENSGT00390000005218 #20	ENSGT00390000004446 #21	ENSGT00930000150973.B #22	ENSGT00940000158244 #23	ENSGT00940000154950 #24	ENSGT00530000069080 #25	ENSGT00940000162188 #26	ENSGT00390000009613.b #29	ENSGT00940000157370 #30	ENSGT00940000157714 #31	ENSGT00940000159984 #32	ENSGT00940000159660 #33	ENSGT00390000008294.e.b.a.b #36	ENSGT00390000001376 #37	ENSGT00940000157910	ENSGT00940000159823	ENSGT00950000182924.B.a.a	ENSGT00940000158059
Marmotini	ANCESTRAL SPECIES	51	ENSGT00940000158625	ENSGT00390000001670	ENSGT00940000153169.A.b.b.a.b ##8	ENSGT00940000156660 #9	ENSGT00390000013285.b #10	ENSGT00390000013285.a #11	ENSGT00940000156721 #12	ENSGT00940000160597 #13	ENSGT00940000153745.b #14	ENSGT00940000154108.b.a.a #15	ENSGT00940000160003 #17	ENSGT00390000017004.a.a #18	ENSGT00950000183088.a.b.b #19	ENSGT00390000005218 #20	ENSGT00390000004446 #21	ENSGT00930000150973.B #22	ENSGT00940000158244 #23	ENSGT00940000154950 #24	ENSGT00530000069080 #25	ENSGT00940000162188 #26	ENSGT00390000009613.b #29	ENSGT00940000157370 #30	ENSGT00940000157714.h #31	ENSGT00940000157714.g #31	ENSGT00940000159984.e #32	ENSGT00940000159660 #33	ENSGT00390000008294.f ##36	ENSGT00390000001376 #37	ENSGT00940000157910	ENSGT00940000159823	ENSGT00950000182924.B.a.a
Marmotini_b	ANCESTRAL SPECIES	199									ENSGT00940000153745.b #14	ENSGT00940000154108.b.a.a #15	ENSGT00940000160003 #17	ENSGT00390000017004.a.a #18	ENSGT00950000183088.a.b.b #19	ENSGT00390000005218 #20	ENSGT00390000004446 #21	ENSGT00930000150973.B #22	ENSGT00940000158244 #23	ENSGT00940000154950 #24	ENSGT00530000069080 #25	ENSGT00940000162188 #26	ENSGT00390000009613.b #29	ENSGT00940000157370 #30	ENSGT00940000157714.h #31	ENSGT00940000157714.g #31	ENSGT00940000159984.e #32	ENSGT00940000159660 #33	ENSGT00390000008294.e.b.a.a ##36
Arctic ground squirrel	MODERN SPECIES	286															ENSUPAG00010009407 #21	NPNT (ENSUPAG00010009088) #22	TBCK (ENSUPAG00010009048) #23	AIMP1 (ENSUPAG00010009041) #24	GIMD1 (ENSUPAG00010009027) #25	DKK2 (ENSUPAG00010009013) #26	PAPSS1 (ENSUPAG00010008992) #29	SGMS2 (ENSUPAG00010008979) #30	CYP2U1 (ENSUPAG00010008973) #31	ENSUPAG00010008957 #32	LEF1 (ENSUPAG00010008645) #33	ENSUPAG00010008601 ##36
Squirrel	MODERN SPECIES	414															ENSSTOG00000031612 #21	NPNT (ENSSTOG00000000885) #22	TBCK (ENSSTOG00000000893) #23	AIMP1 (ENSSTOG00000008178) #24	GIMD1 (ENSSTOG00000026704) #25	DKK2 (ENSSTOG00000020324) #26
Alpin marmot	MODERN SPECIES	14	SLC39A8 (ENSMMMG00000008612)	NFKB1 (ENSMMMG00000008676)	MANBA (ENSMMMG00000008744)	ENSMMMG00000008780 ##8	CISD2 (ENSMMMG00000008837) #9	SLC9B1 (ENSMMMG00000008845) #10	SLC9B2 (ENSMMMG00000008890) #11	BDH2 (ENSMMMG00000008917) #12	TACR3 (ENSMMMG00000008938) #14	CXXC4 (ENSMMMG00000008981) #15	TET2 (ENSMMMG00000008999) #17	PPA2 (ENSMMMG00000009033) #18	ARHGEF38 (ENSMMMG00000009110) #19	ENSMMMG00000009146 #20	GSTCD (ENSMMMG00000009168) #21	NPNT (ENSMMMG00000009207) #22	TBCK (ENSMMMG00000009872) #23	AIMP1 (ENSMMMG00000009938) #24	GIMD1 (ENSMMMG00000009944) #25	ENSMMMG00000009991	DKK2 (ENSMMMG00000010025) #26	PAPSS1 (ENSMMMG00000010079) #29	SGMS2 (ENSMMMG00000010143) #30	ENSMMMG00000010155 #31	ENSMMMG00000010161 #31	ENSMMMG00000010164 #32	LEF1 (ENSMMMG00000010193) #33	RPL34 (ENSMMMG00000010314) ##36	OSTC (ENSMMMG00000010326) #37	ETNPPL (ENSMMMG00000010343)	COL25A1 (ENSMMMG00000010402)
Eurasian red squirrel	MODERN SPECIES	18	CISD2 (ENSSVLG00005007409) #9	SLC9B1 (ENSSVLG00005007310) #10	SLC9B2 (ENSSVLG00005007129) #11	BDH2 (ENSSVLG00005007067) #12	CENPE (ENSSVLG00005006634) #13	TACR3 (ENSSVLG00005006543) #14	ENSSVLG00005006523	CXXC4 (ENSSVLG00005006498) #15	ENSSVLG00005005853	PPA2 (ENSSVLG00005005595) #18	ENSSVLG00005005487	ENSSVLG00005005442 #19	ENSSVLG00005005384 #19	ENSSVLG00005005324 #20	GSTCD (ENSSVLG00005005238) #21	NPNT (ENSSVLG00005004815) #22	TBCK (ENSSVLG00005004638) #23	AIMP1 (ENSSVLG00005004580) #24	GIMD1 (ENSSVLG00005004555) #25	DKK2 (ENSSVLG00005026018) #26	PAPSS1 (ENSSVLG00005026017) #29	SGMS2 (ENSSVLG00005026015) #30	CYP2U1 (ENSSVLG00005026014) #31	HADH (ENSSVLG00005026013) #32	ENSSVLG00005026012 #33	ENSSVLG00005026011	RPL34 (ENSSVLG00005026009) #36	OSTC (ENSSVLG00005026008) #37	ETNPPL (ENSSVLG00005026007)	ENSSVLG00005026006	COL25A1 (ENSSVLG00005026005)
Hystricomorpha	ANCESTRAL SPECIES	38	ENSGT00940000158625.l	ENSGT00390000001670	ENSGT00940000153169.A.b.b.a.b.h ##8	ENSGT00940000156660 #9	ENSGT00390000013285.b #10	ENSGT00390000013285.a #11	ENSGT00940000156721 #12	ENSGT00940000160597 #13	ENSGT00940000153745.b #14	ENSGT00940000154108.b.a.a #15	ENSGT00940000160003 #17	ENSGT00390000017004.a.a #18	ENSGT00950000183088.a.b.b #19	ENSGT00390000005218 #20	ENSGT00390000004446 #21	ENSGT00930000150973.B #22	ENSGT00940000158244 #23	ENSGT00940000154950 #24	ENSGT00530000069080 #25	ENSGT00940000162188 #26	ENSGT00390000009613.b #29	ENSGT00940000157370 #30	ENSGT00940000157714 #31	ENSGT00940000159984 #32	ENSGT00940000159660 #33	ENSGT00390000008294.e.b.a.a ##36	ENSGT00390000008294.f ##36	ENSGT00390000001376 #37	ENSGT00940000157910	ENSGT00940000159823	ENSGT00950000182924.B.a.a
Naked mole-rat female	MODERN SPECIES	19	ENSHGLG00000004201 #9	ENSHGLG00000003170 #10	ENSHGLG00000040534	SLC9B2 (ENSHGLG00000034315) #11	ENSHGLG00000000542 #12	ENSHGLG00000020122	ENSHGLG00000001051	ENSHGLG00000000800	ENSHGLG00000037331 #15	PPA2 (ENSHGLG00000001457) #18	ENSHGLG00000001427 #19	ARHGEF38 (ENSHGLG00000034470) #19	INTS12 (ENSHGLG00000002096) #20	ENSHGLG00000050195	GSTCD (ENSHGLG00000001718) #21	NPNT (ENSHGLG00000001987) #22	ENSHGLG00000034242	TBCK (ENSHGLG00000008209) #23	AIMP1 (ENSHGLG00000003860) #24	GIMD1 (ENSHGLG00000003404) #25	DKK2 (ENSHGLG00000032510) #26	ENSHGLG00000044153	PAPSS1 (ENSHGLG00000001783) #29	ENSHGLG00000038714 #31	HADH (ENSHGLG00000032988) #32	LEF1 (ENSHGLG00000046551) #33	RPL34 (ENSHGLG00000050296) ##36	ENSHGLG00000001959 #37	ENSHGLG00000004469	ENSHGLG00000047113	ENPEP (ENSHGLG00000002965)
Hystricomorpha_a	ANCESTRAL SPECIES	34	ENSGT00940000158625.l	ENSGT00390000001670	ENSGT00940000153169.A.b.b.a.b.h ##8	ENSGT00940000156660 #9	ENSGT00390000013285.b #10	ENSGT00390000013285.a #11	ENSGT00940000156721 #12	ENSGT00940000160597 #13	ENSGT00940000153745.b #14	ENSGT00940000154108.b.a.a #15	ENSGT00940000160003 #17	ENSGT00390000017004.a.a #18	ENSGT00950000183088.a.b.b #19	ENSGT00390000005218 #20	ENSGT00390000004446 #21	ENSGT00930000150973.B #22	ENSGT00940000158244 #23	ENSGT00940000154950 #24	ENSGT00530000069080 #25	ENSGT00940000162188 #26	ENSGT00390000009613.b #29	ENSGT00940000157370 #30	ENSGT00940000157714 #31	ENSGT00940000159984 #32	ENSGT00940000159660 #33	ENSGT00390000008294.e.b.a.a ##36	ENSGT00390000001376 #37	ENSGT00940000157910	ENSGT00940000159823	ENSGT00950000182924.B.a.a	ENSGT00940000158059
Guinea pig	MODERN SPECIES	43	NFKB1 (ENSCPOG00000007789)	MANBA (ENSCPOG00000007804)	ENSCPOG00000040789 ##8	CISD2 (ENSCPOG00000037595) #9	SLC9B1 (ENSCPOG00000015650) #10	SLC9B2 (ENSCPOG00000010368) #11	BDH2 (ENSCPOG00000010376) #12	TACR3 (ENSCPOG00000010746) #14	TET2 (ENSCPOG00000005784) #17	PPA2 (ENSCPOG00000012683) #18	ENSCPOG00000023083	ENSCPOG00000024558 #19	ENSCPOG00000039865 #19	INTS12 (ENSCPOG00000009129) #20	GSTCD (ENSCPOG00000008688) #21	NPNT (ENSCPOG00000006697) #22	TBCK (ENSCPOG00000006708) #23	AIMP1 (ENSCPOG00000006734) #24	DKK2 (ENSCPOG00000030616) #26	PAPSS1 (ENSCPOG00000011505) #29	SGMS2 (ENSCPOG00000032233) #30	CYP2U1 (ENSCPOG00000011750) #31	HADH (ENSCPOG00000024229) #32	LEF1 (ENSCPOG00000013758) #33	ENSCPOG00000037181 ##36	OSTC (ENSCPOG00000039456) #37	ETNPPL (ENSCPOG00000015368)	COL25A1 (ENSCPOG00000012595)	SEC24B (ENSCPOG00000009212)	ENSCPOG00000022594	ENSCPOG00000002110
Hystricomorpha_b	ANCESTRAL SPECIES	52	ENSGT00940000158625.l	ENSGT00390000001670	ENSGT00940000153169.A.b.b.a.b.h ##8	ENSGT00940000156660 #9	ENSGT00390000013285.b #10	ENSGT00390000013285.a #11	ENSGT00940000156721 #12	ENSGT00940000160597 #13	ENSGT00940000153745.b #14	ENSGT00940000154108.b.a.a #15	ENSGT00940000160003 #17	ENSGT00390000017004.a.a #18	ENSGT00950000183088.a.b.b #19	ENSGT00390000005218 #20	ENSGT00390000004446 #21	ENSGT00930000150973.B #22	ENSGT00940000158244 #23	ENSGT00940000154950 #24	ENSGT00530000069080 #25	ENSGT00940000162188 #26	ENSGT00390000009613.b #29	ENSGT00940000157370 #30	ENSGT00940000157714 #31	ENSGT00940000159984 #32	ENSGT00940000159660 #33	ENSGT00390000008294.e.b.a.a ##36	ENSGT00390000008294.f ##36	ENSGT00390000001376 #37	ENSGT00940000157910	ENSGT00940000159823	ENSGT00950000182924.B.a.a
Long-tailed chinchilla	MODERN SPECIES	203	NFKB1 (ENSCLAG00000002329)	MANBA (ENSCLAG00000002028)	ENSCLAG00000001951 ##8	CISD2 (ENSCLAG00000001906) #9	SLC9B1 (ENSCLAG00000001893) #10	SLC9B2 (ENSCLAG00000001811) #11	BDH2 (ENSCLAG00000007330) #12	CENPE (ENSCLAG00000006287) #13	TACR3 (ENSCLAG00000005677) #14	ENSCLAG00000005638 #15	TET2 (ENSCLAG00000005412) #17	PPA2 (ENSCLAG00000004964) #18	ARHGEF38 (ENSCLAG00000003103) #19	INTS12 (ENSCLAG00000003066) #20	GSTCD (ENSCLAG00000002751) #21	NPNT (ENSCLAG00000002301) #22	TBCK (ENSCLAG00000004392) #23	AIMP1 (ENSCLAG00000003954) #24	GIMD1 (ENSCLAG00000003485) #25	DKK2 (ENSCLAG00000002881) #26	PAPSS1 (ENSCLAG00000002840) #29	SGMS2 (ENSCLAG00000002723) #30	CYP2U1 (ENSCLAG00000002674) #31	HADH (ENSCLAG00000003966) #32	LEF1 (ENSCLAG00000003044) #33	ENSCLAG00000003911 ##36	OSTC (ENSCLAG00000003790) #37	ETNPPL (ENSCLAG00000002982)	COL25A1 (ENSCLAG00000002719)	ENSCLAG00000002421	SEC24B (ENSCLAG00000004027)
Degu	MODERN SPECIES	57						ENSODEG00000011668 #15	ENSODEG00000011599	TET2 (ENSODEG00000011623) #17	PPA2 (ENSODEG00000012171) #18	ENSODEG00000012068	ENSODEG00000011526	ENSODEG00000010989 #19	ENSODEG00000011418 #19	INTS12 (ENSODEG00000010716) #20	GSTCD (ENSODEG00000011298) #21	NPNT (ENSODEG00000012616) #22	ENSODEG00000011791	ENSODEG00000010617 #24	GIMD1 (ENSODEG00000011081) #25	DKK2 (ENSODEG00000013005) #26	PAPSS1 (ENSODEG00000012464) #29	SGMS2 (ENSODEG00000010387) #30	CYP2U1 (ENSODEG00000010344) #31	HADH (ENSODEG00000011168) #32	LEF1 (ENSODEG00000010436) #33	ENSODEG00000019987	ENSODEG00000012716 ##36	OSTC (ENSODEG00000011874) #37	ETNPPL (ENSODEG00000011007)	COL25A1 (ENSODEG00000011565)	ENSODEG00000011204
Lagomorpha	ANCESTRAL SPECIES	45	ENSGT00390000008787.a	ENSGT00940000158926	ENSGT00940000158625	ENSGT00390000001670	ENSGT00940000153169.A.b.b.a.a.b #8	ENSGT00940000156660 #9	ENSGT00390000013285.b #10	ENSGT00390000013285.a #11	ENSGT00940000156721 #12	ENSGT00940000160597 #13	ENSGT00940000160003 #17	ENSGT00390000017004.a.a #18	ENSGT00950000183088.a.b.b #19	ENSGT00390000005218 #20	ENSGT00390000004446 #21	ENSGT00930000150973.B #22	ENSGT00940000158244 #23	ENSGT00940000154950 #24	ENSGT00530000069080 #25	ENSGT00940000162188 #26	ENSGT00390000009613.b #29	ENSGT00940000157370 #30	ENSGT00940000157714 #31	ENSGT00940000159984 #32	ENSGT00940000159660 #33	ENSGT00390000008294.f ##36	ENSGT00390000001376 #37	ENSGT00940000157910	ENSGT00940000159823	ENSGT00940000158059	ENSGT00940000155140
Rabbit	MODERN SPECIES	6	CENPE (ENSOCUG00000000699) #13	ENSOCUG00000031712	ENSOCUG00000037044	ENSOCUG00000023919	TACR3 (ENSOCUG00000009581) #14	ENSOCUG00000015536 ##15	ENSOCUG00000034203	ENSOCUG00000037821	ENSOCUG00000026448	ENSOCUG00000021908	TET2 (ENSOCUG00000007098) #17	PPA2 (ENSOCUG00000005941) #18	ARHGEF38 (ENSOCUG00000027996) #19	INTS12 (ENSOCUG00000011321) #20	GSTCD (ENSOCUG00000003884) #21	NPNT (ENSOCUG00000012530) #22	ENSOCUG00000032155	TBCK (ENSOCUG00000008514) #23	AIMP1 (ENSOCUG00000002043) #24	GIMD1 (ENSOCUG00000026543) #25	DKK2 (ENSOCUG00000001765) #26	PAPSS1 (ENSOCUG00000004622) #29	SGMS2 (ENSOCUG00000009998) #30	CYP2U1 (ENSOCUG00000002281) #31	HADH (ENSOCUG00000014271) #32	LEF1 (ENSOCUG00000010436) #33	ENSOCUG00000024066	ENSOCUG00000021006	ENSOCUG00000029357 ##36	ENSOCUG00000011056 #37	ETNPPL (ENSOCUG00000015610)
Pika	MODERN SPECIES	1602													ENSOPRG00000001123 #19	INTS12 (ENSOPRG00000001128) #20	GSTCD (ENSOPRG00000001142) #21	NPNT (ENSOPRG00000001171) #22
Laurasiatheria	ANCESTRAL SPECIES	11	ENSGT00940000158625	ENSGT00390000001670	ENSGT00940000153169.A.b.b.a.a.b #8	ENSGT00940000156660 #9	ENSGT00390000013285.b #10	ENSGT00390000013285.a #11	ENSGT00940000156721 #12	ENSGT00940000160597 #13	ENSGT00940000153745.b #14	ENSGT00940000154108.b.a.a #15	ENSGT00940000160003 #17	ENSGT00390000017004.a.a #18	ENSGT00950000183088.a.b.b #19	ENSGT00390000005218 #20	ENSGT00390000004446 #21	ENSGT00930000150973.B #22	ENSGT00940000158244 #23	ENSGT00940000169429	ENSGT00940000154950 #24	ENSGT00530000069080 #25	ENSGT00940000162188 #26	ENSGT00390000009613.b #29	ENSGT00940000157370 #30	ENSGT00940000157714 #31	ENSGT00940000159984 #32	ENSGT00940000159660 #33	ENSGT00390000008294.f ##36	ENSGT00390000001376 #37	ENSGT00940000157910	ENSGT00940000159823	ENSGT00950000182924.B.a.a
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00930000150973.B #22
Hedgehog	MODERN SPECIES	6381																ENSEEUG00000014578 #22
Laurasiatheria_a	ANCESTRAL SPECIES	8	ENSGT00940000158625	ENSGT00390000001670	ENSGT00940000153169.A.b.b.a.a.b #8	ENSGT00940000156660 #9	ENSGT00390000013285.b #10	ENSGT00390000013285.a #11	ENSGT00940000156721 #12	ENSGT00940000160597 #13	ENSGT00940000153745.b #14	ENSGT00940000154108.b.a.a #15	ENSGT00940000160003 #17	ENSGT00390000017004.a.a #18	ENSGT00950000183088.a.b.b #19	ENSGT00390000005218 #20	ENSGT00390000004446 #21	ENSGT00930000150973.B #22	ENSGT00940000158244 #23	ENSGT00940000169429	ENSGT00940000154950 #24	ENSGT00530000069080 #25	ENSGT00940000162188 #26	ENSGT00390000009613.b #29	ENSGT00940000157370 #30	ENSGT00940000157714 #31	ENSGT00940000159984 #32	ENSGT00940000159660 #33	ENSGT00390000008294.e.b.a.a ##36	ENSGT00390000008294.f ##36	ENSGT00390000001376 #37	ENSGT00940000157910	ENSGT00940000159823
Artiodactyla	ANCESTRAL SPECIES	12	ENSGT00940000158625	ENSGT00390000001670	ENSGT00940000153169.A.b.b.a.a.b #8	ENSGT00940000156660 #9	ENSGT00390000013285.b #10	ENSGT00390000013285.a #11	ENSGT00940000156721 #12	ENSGT00940000160597 #13	ENSGT00940000153745.b #14	ENSGT00940000154108.b.a.a #15	ENSGT00940000160003 #17	ENSGT00390000017004.a.a #18	ENSGT00950000183088.a.b.b #19	ENSGT00390000005218 #20	ENSGT00390000004446 #21	ENSGT00930000150973.B #22	ENSGT00940000158244 #23	ENSGT00940000169429	ENSGT00940000154950 #24	ENSGT00530000069080 #25	ENSGT00940000162188 #26	ENSGT00390000009613.b #29	ENSGT00940000157370 #30	ENSGT00940000157714 #31	ENSGT00940000159984 #32	ENSGT00940000159660 #33	ENSGT00390000008294.f ##36	ENSGT00390000008294.e.a ##36	ENSGT00390000001376 #37	ENSGT00940000157910	ENSGT00940000159823
Suina	ANCESTRAL SPECIES	22	ENSGT00940000158625	ENSGT00390000001670	ENSGT00940000153169.A.b.b.a.b ##8	ENSGT00940000156660 #9	ENSGT00390000013285.b #10	ENSGT00390000013285.a #11	ENSGT00940000156721 #12	ENSGT00940000160597 #13	ENSGT00940000153745.b #14	ENSGT00940000154108.b.a.a #15	ENSGT00940000160003 #17	ENSGT00390000017004.a.a #18	ENSGT00950000183088.a.b.b #19	ENSGT00390000005218 #20	ENSGT00390000004446 #21	ENSGT00930000150973.B #22	ENSGT00940000158244 #23	ENSGT00940000154950 #24	ENSGT00530000069080 #25	ENSGT00940000162188 #26	ENSGT00390000009613.b #29	ENSGT00940000157370 #30	ENSGT00940000157714 #31	ENSGT00940000159984 #32	ENSGT00940000159660 #33	ENSGT00390000008294.e.b.a.a ##36	ENSGT00390000001376 #37	ENSGT00940000157910	ENSGT00940000159823	ENSGT00950000182924.B.a.a	ENSGT00940000158059
Chacoan peccary	MODERN SPECIES	117	MANBA (ENSCWAG00000010044)	ENSCWAG00000010275 #8	CISD2 (ENSCWAG00000010449) #9	SLC9B1 (ENSCWAG00000010503) #10	SLC9B2 (ENSCWAG00000010687) #11	BDH2 (ENSCWAG00000010787) #12	CENPE (ENSCWAG00000010844) #13	TACR3 (ENSCWAG00000011213) #14	CXXC4 (ENSCWAG00000011291) #15	TET2 (ENSCWAG00000011335) #17	PPA2 (ENSCWAG00000011521) #18	ENSCWAG00000012339 #19	ENSCWAG00000012382 #19	INTS12 (ENSCWAG00000012476) #20	GSTCD (ENSCWAG00000012515) #21	NPNT (ENSCWAG00000012655) #22	TBCK (ENSCWAG00000013024) #23	AIMP1 (ENSCWAG00000013148) #24	GIMD1 (ENSCWAG00000013232) #25	DKK2 (ENSCWAG00000013256) #26	PAPSS1 (ENSCWAG00000013320) #29	SGMS2 (ENSCWAG00000013366) #30	CYP2U1 (ENSCWAG00000013408) #31	HADH (ENSCWAG00000013471) #32	LEF1 (ENSCWAG00000013569) #33	ENSCWAG00000013949 ##36	OSTC (ENSCWAG00000013983) #37	ETNPPL (ENSCWAG00000014038)	COL25A1 (ENSCWAG00000014445)	SEC24B (ENSCWAG00000015663)	MCUB (ENSCWAG00000015844)
Pig	MODERN SPECIES	16	NFKB1 (ENSSSCG00000030957)	MANBA (ENSSSCG00000009166)	UBE2D3 (ENSSSCG00000035622) ##8	CISD2 (ENSSSCG00000009164) #9	SLC9B1 (ENSSSCG00000009162) #10	SLC9B2 (ENSSSCG00000028101) #11	BDH2 (ENSSSCG00000022282) #12	CENPE (ENSSSCG00000023296) #13	TACR3 (ENSSSCG00000009160) #14	CXXC4 (ENSSSCG00000062602) #15	ENSSSCG00000009157 #17	PPA2 (ENSSSCG00000022788) #18	ARHGEF38 (ENSSSCG00000021764) #19	INTS12 (ENSSSCG00000030617) #20	GSTCD (ENSSSCG00000023548) #21	NPNT (ENSSSCG00000038801) #22	TBCK (ENSSSCG00000021784) #23	AIMP1 (ENSSSCG00000024168) #24	GIMD1 (ENSSSCG00000039563) #25	DKK2 (ENSSSCG00000032094) #26	PAPSS1 (ENSSSCG00000031901) #29	SGMS2 (ENSSSCG00000009152) #30	CYP2U1 (ENSSSCG00000009151) #31	HADH (ENSSSCG00000009150) #32	LEF1 (ENSSSCG00000009148) #33	ENSSSCG00000044193	ENSSSCG00000009146 ##36	OSTC (ENSSSCG00000009145) #37	ETNPPL (ENSSSCG00000009144)	COL25A1 (ENSSSCG00000039813)	SEC24B (ENSSSCG00000009142)
Artiodactyla_a	ANCESTRAL SPECIES	12	ENSGT00940000158625	ENSGT00390000001670	ENSGT00940000153169.A.b.b.a.a.b #8	ENSGT00940000156660 #9	ENSGT00390000013285.b #10	ENSGT00390000013285.a #11	ENSGT00940000156721 #12	ENSGT00940000160597 #13	ENSGT00940000153745.b #14	ENSGT00940000154108.b.a.a #15	ENSGT00940000160003 #17	ENSGT00390000017004.a.a #18	ENSGT00950000183088.a.b.b #19	ENSGT00390000005218 #20	ENSGT00390000004446 #21	ENSGT00930000150973.B #22	ENSGT00940000158244 #23	ENSGT00940000169429	ENSGT00940000154950 #24	ENSGT00530000069080 #25	ENSGT00940000162188 #26	ENSGT00390000009613.b #29	ENSGT00940000157370 #30	ENSGT00940000157714 #31	ENSGT00940000159984 #32	ENSGT00940000159660 #33	ENSGT00390000008294.f ##36	ENSGT00390000008294.e.a ##36	ENSGT00390000001376 #37	ENSGT00940000157910	ENSGT00940000159823
Artiodactyla_b	ANCESTRAL SPECIES	16	ENSGT00940000158625	ENSGT00390000001670	ENSGT00940000153169.A.b.b.a.a.b #8	ENSGT00940000156660 #9	ENSGT00390000013285.b #10	ENSGT00390000013285.a #11	ENSGT00940000156721 #12	ENSGT00940000160597 #13	ENSGT00940000153745.b #14	ENSGT00940000154108.b.a.a #15	ENSGT00940000160003 #17	ENSGT00390000017004.a.a #18	ENSGT00950000183088.a.b.b #19	ENSGT00390000005218 #20	ENSGT00390000004446 #21	ENSGT00930000150973.B #22	ENSGT00940000158244 #23	ENSGT00940000169429	ENSGT00940000154950 #24	ENSGT00530000069080 #25	ENSGT00940000162188 #26	ENSGT00390000009613.b #29	ENSGT00940000157370 #30	ENSGT00940000157714 #31	ENSGT00940000159984 #32	ENSGT00940000159660 #33	ENSGT00390000008294.f ##36	ENSGT00390000001376 #37	ENSGT00940000157910	ENSGT00940000159823	ENSGT00950000182924.B.a.a
Cetacea	ANCESTRAL SPECIES	12	ENSGT00940000154127.B	ENSGT01030000234527.A.a.b.b.b	ENSGT00390000003220	ENSGT00940000153713.B.c	ENSGT00390000013285.b #10	ENSGT00390000013285.a #11	ENSGT00940000156721 #12	ENSGT00940000160597 #13	ENSGT00940000153745.b #14	ENSGT00940000154108.b.a.a #15	ENSGT00940000160003 #17	ENSGT00390000017004.a.a.k #18	ENSGT00950000183088.a.b.b #19	ENSGT00390000005218 #20	ENSGT00390000004446 #21	ENSGT00930000150973.B #22	ENSGT00940000158244 #23	ENSGT00940000154950 #24	ENSGT00530000069080 #25	ENSGT01010000228945	ENSGT00940000162188 #26	ENSGT00390000009613.b #29	ENSGT00940000157370 #30	ENSGT00940000157714 #31	ENSGT00940000159984 #32	ENSGT00940000159660 #33	ENSGT00390000008294.f ##36	ENSGT00390000001376 #37	ENSGT00940000157910	ENSGT00940000159823	ENSGT00950000182924.B.a.a
Odontoceti	ANCESTRAL SPECIES	11	ENSGT00940000154127.B	ENSGT01030000234527.A.a.b.b.b	ENSGT00390000003220	ENSGT00940000153713.B.c	ENSGT00390000013285.b #10	ENSGT00390000013285.a #11	ENSGT00940000156721 #12	ENSGT00940000160597 #13	ENSGT00940000153745.b #14	ENSGT00940000154108.b.a.a #15	ENSGT00940000160003 #17	ENSGT00390000017004.a.a.k #18	ENSGT00950000183088.a.b.b #19	ENSGT00390000005218 #20	ENSGT00390000004446 #21	ENSGT00930000150973.B #22	ENSGT00940000158244 #23	ENSGT00940000154950 #24	ENSGT00530000069080 #25	ENSGT01010000228945	ENSGT00940000162188 #26	ENSGT00390000009613.b #29	ENSGT00940000157370 #30	ENSGT00940000157714 #31	ENSGT00940000159984 #32	ENSGT00940000159660 #33	ENSGT00390000008294.f ##36	ENSGT00390000001376 #37	ENSGT00940000157910	ENSGT00940000159823	ENSGT00950000182924.B.a.a
Odontoceti_a	ANCESTRAL SPECIES	22	ENSGT00940000154127.B	ENSGT01030000234527.A.a.b.b.b	ENSGT00390000003220	ENSGT00940000153713.B.c	ENSGT00390000013285.b #10	ENSGT00390000013285.a #11	ENSGT00940000156721 #12	ENSGT00940000160597 #13	ENSGT00940000153745.b #14	ENSGT00940000154108.b.a.a #15	ENSGT00940000160003 #17	ENSGT00390000017004.a.a.k #18	ENSGT00950000183088.a.b.b #19	ENSGT00390000005218 #20	ENSGT00390000004446 #21	ENSGT00930000150973.B #22	ENSGT00940000158244 #23	ENSGT00940000154950 #24	ENSGT00530000069080 #25	ENSGT01010000228945	ENSGT00940000162188 #26	ENSGT00390000009613.b #29	ENSGT00940000157370 #30	ENSGT00940000157714 #31	ENSGT00940000159984 #32	ENSGT00940000159660 #33	ENSGT00390000008294.f ##36	ENSGT00390000001376 #37	ENSGT00940000157910	ENSGT00940000159823	ENSGT00950000182924.B.a.a
Odontoceti_b	ANCESTRAL SPECIES	11	ENSGT00940000154127.B	ENSGT01030000234527.A.a.b.b.b	ENSGT00390000003220	ENSGT00940000153713.B.c	ENSGT00390000013285.b #10	ENSGT00390000013285.a #11	ENSGT00940000156721 #12	ENSGT00940000160597 #13	ENSGT00940000153745.b #14	ENSGT00940000154108.b.a.a #15	ENSGT00940000160003 #17	ENSGT00390000017004.a.a.k #18	ENSGT00950000183088.a.b.b #19	ENSGT00390000005218 #20	ENSGT00390000004446 #21	ENSGT00930000150973.B #22	ENSGT00940000158244 #23	ENSGT00940000154950 #24	ENSGT00530000069080 #25	ENSGT01010000228945	ENSGT00940000162188 #26	ENSGT00390000009613.b #29	ENSGT00610000087446.e	ENSGT00390000015889.o.b.a.b	ENSGT00940000157370 #30	ENSGT00940000157714 #31	ENSGT00940000159984 #32	ENSGT00940000159660 #33	ENSGT00390000008294.f ##36	ENSGT00390000001376 #37	ENSGT00940000157910
Monodontidae	ANCESTRAL SPECIES	9	ENSGT00940000154127.B	ENSGT01030000234527.A.a.b.b.b	ENSGT00390000003220	ENSGT00940000153713.B.c	ENSGT00390000013285.b #10	ENSGT00390000013285.a #11	ENSGT00940000156721 #12	ENSGT00940000160597 #13	ENSGT00940000153745.b #14	ENSGT00940000154108.b.a.a #15	ENSGT00940000160003 #17	ENSGT00390000017004.a.a.k #18	ENSGT00950000183088.a.b.b #19	ENSGT00390000005218 #20	ENSGT00390000004446 #21	ENSGT00930000150973.B #22	ENSGT00940000158244 #23	ENSGT00940000154950 #24	ENSGT00530000069080 #25	ENSGT01010000228945	ENSGT00940000162188 #26	ENSGT00390000009613.b #29	ENSGT00610000087446.e	ENSGT00390000015889.o.b.a.b	ENSGT00940000157370 #30	ENSGT00940000157714 #31	ENSGT00940000159984 #32	ENSGT00940000159660 #33	ENSGT00390000008294.f ##36	ENSGT00390000001376 #37	ENSGT00940000157910
Beluga whale	MODERN SPECIES	77	EVC (ENSDLEG00000016237)	CRMP1 (ENSDLEG00000016376)	C4orf50 (ENSDLEG00000017808)	JAKMIP1 (ENSDLEG00000017874)	ENSDLEG00000018020 #10	SLC9B2 (ENSDLEG00000018032) #11	BDH2 (ENSDLEG00000016235) #12	CENPE (ENSDLEG00000016283) #13	TACR3 (ENSDLEG00000016577) #14	CXXC4 (ENSDLEG00000016604) #15	ENSDLEG00000016614 #17	ENSDLEG00000016623 #18	ARHGEF38 (ENSDLEG00000016642) #19	INTS12 (ENSDLEG00000016671) #20	GSTCD (ENSDLEG00000016682) #21	NPNT (ENSDLEG00000016711) #22	TBCK (ENSDLEG00000016743) #23	AIMP1 (ENSDLEG00000016772) #24	GIMD1 (ENSDLEG00000016786) #25	ENSDLEG00000016794	DKK2 (ENSDLEG00000016802) #26	PAPSS1 (ENSDLEG00000016819) #29	PIGY (ENSDLEG00000016856)	ENSDLEG00000016862	SGMS2 (ENSDLEG00000016878) #30	CYP2U1 (ENSDLEG00000016894) #31	HADH (ENSDLEG00000016907) #32	LEF1 (ENSDLEG00000016934) #33	RPL34 (ENSDLEG00000016949) ##36	OSTC (ENSDLEG00000016962) #37	ETNPPL (ENSDLEG00000016984)
Narwhal	MODERN SPECIES	307	EVC (ENSMMNG00015008753)	CRMP1 (ENSMMNG00015008810)	ENSMMNG00015008860	JAKMIP1 (ENSMMNG00015008903)	SLC9B2 (ENSMMNG00015009008) #11	BDH2 (ENSMMNG00015009054) #12	CENPE (ENSMMNG00015009075) #13	TACR3 (ENSMMNG00015009099) #14	CXXC4 (ENSMMNG00015009116) #15	TET2 (ENSMMNG00015009126) #17	ENSMMNG00015009168 #18	ENSMMNG00015009223 #19	ARHGEF38 (ENSMMNG00015009239) #19	INTS12 (ENSMMNG00015009253) #20	GSTCD (ENSMMNG00015009272) #21	NPNT (ENSMMNG00015009318) #22	TBCK (ENSMMNG00015009409) #23	AIMP1 (ENSMMNG00015009440) #24	GIMD1 (ENSMMNG00015009450) #25	DKK2 (ENSMMNG00015009459) #26	PAPSS1 (ENSMMNG00015009486) #29	PIGY (ENSMMNG00015009502)	ENSMMNG00015009508	SGMS2 (ENSMMNG00015009514) #30	CYP2U1 (ENSMMNG00015009524) #31	HADH (ENSMMNG00015009539) #32	LEF1 (ENSMMNG00015009575) #33	ENSMMNG00015009622 ##36	ENSMMNG00015009632 #37	ETNPPL (ENSMMNG00015009644)	COL25A1 (ENSMMNG00015009795)
Vaquita	MODERN SPECIES	16	JAKMIP1 (ENSPSNG00000009684)	SLC9B1 (ENSPSNG00000009326) #10	SLC9B2 (ENSPSNG00000008637) #11	BDH2 (ENSPSNG00000008551) #12	CENPE (ENSPSNG00000007761) #13	TACR3 (ENSPSNG00000007560) #14	ENSPSNG00000007526	CXXC4 (ENSPSNG00000007410) #15	TET2 (ENSPSNG00000007329) #17	ENSPSNG00000007267	ENSPSNG00000007089 #18	ENSPSNG00000007024 #19	ENSPSNG00000006969 #19	INTS12 (ENSPSNG00000006928) #20	GSTCD (ENSPSNG00000006855) #21	NPNT (ENSPSNG00000009533) #22	TBCK (ENSPSNG00000009128) #23	AIMP1 (ENSPSNG00000009062) #24	GIMD1 (ENSPSNG00000009033) #25	ENSPSNG00000009014	DKK2 (ENSPSNG00000008969) #26	PAPSS1 (ENSPSNG00000008923) #29	ENSPSNG00000008882	SGMS2 (ENSPSNG00000008846) #30	CYP2U1 (ENSPSNG00000008786) #31	HADH (ENSPSNG00000008706) #32	LEF1 (ENSPSNG00000008457) #33	ENSPSNG00000008387	ENSPSNG00000008254 #37	ETNPPL (ENSPSNG00000007968)	COL25A1 (ENSPSNG00000006689)
Dolphin	MODERN SPECIES	4952																NPNT (ENSTTRG00000004921) #22
Sperm whale	MODERN SPECIES	18	ENSPCTG00005020657	JAKMIP1 (ENSPCTG00005020722)	SLC9B1 (ENSPCTG00005021085) #10	SLC9B2 (ENSPCTG00005021171) #11	BDH2 (ENSPCTG00005021203) #12	CENPE (ENSPCTG00005021229) #13	TACR3 (ENSPCTG00005021531) #14	CXXC4 (ENSPCTG00005021547) #15	TET2 (ENSPCTG00005021562) #17	ENSPCTG00005000292 #18	ENSPCTG00005000344	ENSPCTG00005000365 #19	ENSPCTG00005000394 #19	INTS12 (ENSPCTG00005000413) #20	GSTCD (ENSPCTG00005000434) #21	NPNT (ENSPCTG00005000534) #22	TBCK (ENSPCTG00005001017) #23	AIMP1 (ENSPCTG00005001065) #24	GIMD1 (ENSPCTG00005001086) #25	DKK2 (ENSPCTG00005001096) #26	PAPSS1 (ENSPCTG00005001117) #29	ENSPCTG00005001147	ENSPCTG00005001150	SGMS2 (ENSPCTG00005001158) #30	CYP2U1 (ENSPCTG00005001173) #31	HADH (ENSPCTG00005001187) #32	LEF1 (ENSPCTG00005001263) #33	RPL34 (ENSPCTG00005001492) ##36	OSTC (ENSPCTG00005001507) #37	ETNPPL (ENSPCTG00005001536)	COL25A1 (ENSPCTG00005001710)
Blue whale	MODERN SPECIES	16	ENSBMSG00010005265	JAKMIP1 (ENSBMSG00010007782)	SLC9B2 (ENSBMSG00010007996) #11	BDH2 (ENSBMSG00010008025) #12	CENPE (ENSBMSG00010008068) #13	TACR3 (ENSBMSG00010008106) #14	ENSBMSG00010008116	CXXC4 (ENSBMSG00010008131) #15	TET2 (ENSBMSG00010008147) #17	PPA2 (ENSBMSG00010008199) #18	ENSBMSG00010008529	ENSBMSG00010008552 #19	ARHGEF38 (ENSBMSG00010008571) #19	INTS12 (ENSBMSG00010008596) #20	GSTCD (ENSBMSG00010008619) #21	NPNT (ENSBMSG00010008674) #22	TBCK (ENSBMSG00010008825) #23	AIMP1 (ENSBMSG00010008873) #24	GIMD1 (ENSBMSG00010008886) #25	ENSBMSG00010008901	DKK2 (ENSBMSG00010008913) #26	PAPSS1 (ENSBMSG00010008949) #29	CYP2U1 (ENSBMSG00010008999) #31	HADH (ENSBMSG00010009016) #32	LEF1 (ENSBMSG00010009062) #33	ENSBMSG00010009129 ##36	ENSBMSG00010009146 #37	ETNPPL (ENSBMSG00010009166)	COL25A1 (ENSBMSG00010009308)	SEC24B (ENSBMSG00010010015)	MCUB (ENSBMSG00010010120)
Pecora	ANCESTRAL SPECIES	15	ENSGT00940000158625	ENSGT00390000001670	ENSGT00940000153169.A.b.b.a.a.b #8	ENSGT00940000156660 #9	ENSGT00390000013285.b #10	ENSGT00390000013285.a #11	ENSGT00940000156721 #12	ENSGT00940000160597 #13	ENSGT00940000153745.b #14	ENSGT00940000154108.b.a.a #15	ENSGT00940000160003 #17	ENSGT00390000017004.a.a #18	ENSGT00950000183088.a.b.b #19	ENSGT00390000005218 #20	ENSGT00390000004446 #21	ENSGT00930000150973.B #22	ENSGT00940000158244 #23	ENSGT00940000169429	ENSGT00940000154950 #24	ENSGT00530000069080 #25	ENSGT00940000162188 #26	ENSGT00390000009613.b #29	ENSGT00940000157370 #30	ENSGT00940000157714 #31	ENSGT00940000159984 #32	ENSGT00940000159660 #33	ENSGT00390000008294.f ##36	ENSGT00390000008294.e.a ##36	ENSGT00390000001376 #37	ENSGT00940000157910	ENSGT00940000159823
Percora_a	ANCESTRAL SPECIES	18	ENSGT00940000158625	ENSGT00390000001670	ENSGT00940000153169.A.b.b.a.a.b #8	ENSGT00940000156660 #9	ENSGT00390000013285.b #10	ENSGT00390000013285.a #11	ENSGT00940000156721 #12	ENSGT00940000160597 #13	ENSGT00940000153745.b #14	ENSGT00940000154108.b.a.a #15	ENSGT00940000160003 #17	ENSGT00390000017004.a.a #18	ENSGT00950000183088.a.b.b #19	ENSGT00390000005218 #20	ENSGT00390000004446 #21	ENSGT00930000150973.B #22	ENSGT00940000158244 #23	ENSGT00940000154950 #24	ENSGT00530000069080 #25	ENSGT00940000162188 #26	ENSGT00390000009613.b #29	ENSGT00940000157370 #30	ENSGT00940000157714 #31	ENSGT00940000159984 #32	ENSGT00940000159660 #33	ENSGT00390000008294.f ##36	ENSGT00390000001376.gb.a #37	ENSGT00390000008294.e.b.a.b #36	ENSGT00390000001376.gb.b #37	ENSGT00940000157910	ENSGT00940000159823
Bovidae	ANCESTRAL SPECIES	18	ENSGT00940000158625	ENSGT00390000001670	ENSGT00940000153169.A.b.b.a.a.b #8	ENSGT00940000156660 #9	ENSGT00390000013285.b #10	ENSGT00390000013285.a #11	ENSGT00940000156721 #12	ENSGT00940000160597 #13	ENSGT00940000153745.b #14	ENSGT00940000154108.b.a.a #15	ENSGT00940000160003 #17	ENSGT00390000017004.a.a #18	ENSGT00950000183088.a.b.b #19	ENSGT00390000005218 #20	ENSGT00390000004446 #21	ENSGT00930000150973.B #22	ENSGT00940000158244 #23	ENSGT00940000154950 #24	ENSGT00530000069080 #25	ENSGT00940000162188 #26	ENSGT00390000009613.b #29	ENSGT00940000157370 #30	ENSGT00940000157714 #31	ENSGT00940000159984 #32	ENSGT00940000159660 #33	ENSGT00390000008294.e.b.a.b #36	ENSGT00390000001376.gb.b.a #37	ENSGT00940000157910	ENSGT00940000159823	ENSGT00950000182924.B.a.a	ENSGT00940000158059
Caprinae	ANCESTRAL SPECIES	13	ENSGT00940000158625	ENSGT00390000001670	ENSGT00940000153169.A.b.b.a.b ##8	ENSGT00940000156660 #9	ENSGT00390000013285.b #10	ENSGT00390000013285.a #11	ENSGT00940000156721 #12	ENSGT00940000160597 #13	ENSGT00940000153745.b #14	ENSGT00940000154108.b.a.a #15	ENSGT00940000160003 #17	ENSGT00390000017004.a.a.n #18	ENSGT00950000183088.a.b.b #19	ENSGT00390000005218 #20	ENSGT00390000004446 #21	ENSGT00930000150973.B #22	ENSGT00940000158244 #23	ENSGT00940000154950.k.a.a #24	ENSGT00530000069080 #25	ENSGT00940000162188 #26	ENSGT00390000009613.b #29	ENSGT00940000157370 #30	ENSGT00940000157714 #31	ENSGT00940000159984.i #32	ENSGT00940000159660 #33	ENSGT00390000008294.f ##36	ENSGT00390000001376.gb.a #37	ENSGT00940000157910	ENSGT00940000159823	ENSGT00950000182924.B.a.a	ENSGT00940000158059
Goat	MODERN SPECIES	25	ENSCHIG00000025487 ##8	CISD2 (ENSCHIG00000023844) #9	SLC9B1 (ENSCHIG00000019723) #10	ENSCHIG00000010225	SLC9B2 (ENSCHIG00000013323) #11	BDH2 (ENSCHIG00000019185) #12	CENPE (ENSCHIG00000018049) #13	ENSCHIG00000020080	TACR3 (ENSCHIG00000020386) #14	CXXC4 (ENSCHIG00000010456) #15	TET2 (ENSCHIG00000019979) #17	PPA2 (ENSCHIG00000008289) #18	ARHGEF38 (ENSCHIG00000012264) #19	INTS12 (ENSCHIG00000022093) #20	GSTCD (ENSCHIG00000018039) #21	NPNT (ENSCHIG00000019044) #22	TBCK (ENSCHIG00000014456) #23	ENSCHIG00000019094 #24	ENSCHIG00000021709 #25	DKK2 (ENSCHIG00000026036) #26	PAPSS1 (ENSCHIG00000007800) #29	SGMS2 (ENSCHIG00000017842) #30	CYP2U1 (ENSCHIG00000026026) #31	ENSCHIG00000013637 #32	LEF1 (ENSCHIG00000025316) #33	ENSCHIG00000013243 ##36	ENSCHIG00000015972 #37	ETNPPL (ENSCHIG00000015229)	COL25A1 (ENSCHIG00000016113)	SEC24B (ENSCHIG00000018301)	MCUB (ENSCHIG00000011971)
Rambouillet Sheep	MODERN SPECIES	22	NFKB1 (ENSOARG00020011515)	MANBA (ENSOARG00020010968)	ENSOARG00020010643 ##8	CISD2 (ENSOARG00020010587) #9	SLC9B2 (ENSOARG00020010274) #11	BDH2 (ENSOARG00020009969) #12	ENSOARG00020009536	CXXC4 (ENSOARG00020009502) #15	TET2 (ENSOARG00020009309) #17	ENSOARG00020009270	ENSOARG00020008734 #18	ENSOARG00020008686 #19	ENSOARG00020025875 #19	INTS12 (ENSOARG00020025864) #20	GSTCD (ENSOARG00020025853) #21	NPNT (ENSOARG00020025758) #22	TBCK (ENSOARG00020025643) #23	ENSOARG00020025630 #24	GIMD1 (ENSOARG00020025626) #25	ENSOARG00020025618	DKK2 (ENSOARG00020025615) #26	ENSOARG00020025611	ENSOARG00020025608	PAPSS1 (ENSOARG00020025599) #29	SGMS2 (ENSOARG00020025595) #30	CYP2U1 (ENSOARG00020025587) #31	HADH (ENSOARG00020025577) #32	LEF1 (ENSOARG00020025493) #33	ENSOARG00020025464 #36	ENSOARG00020025453	ENSOARG00020025445
Bovinae	ANCESTRAL SPECIES	15	ENSGT00940000158625	ENSGT00390000001670	ENSGT00940000153169.A.b.b.a.a.b #8	ENSGT00940000156660 #9	ENSGT00390000013285.b #10	ENSGT00390000013285.a #11	ENSGT00940000156721 #12	ENSGT00940000160597 #13	ENSGT00940000153745.b #14	ENSGT00940000154108.b.a.a #15	ENSGT00940000160003 #17	ENSGT00390000017004.a.a #18	ENSGT00950000183088.a.b.b #19	ENSGT00390000005218 #20	ENSGT00390000004446 #21	ENSGT00930000150973.B #22	ENSGT00940000158244 #23	ENSGT00940000154950 #24	ENSGT00530000069080 #25	ENSGT00940000162188 #26	ENSGT00390000009613.b #29	ENSGT00940000157370 #30	ENSGT00940000157714 #31	ENSGT00940000159984.h #32	ENSGT00940000159660 #33	ENSGT00390000008294.e.a ##36	ENSGT00390000001376.hb #37	ENSGT00390000008294.e.b.a.a ##36	ENSGT00390000001376.gb.b.a #37	ENSGT00940000157910	ENSGT00940000159823
Bos	ANCESTRAL SPECIES	15	ENSGT00940000158625	ENSGT00390000001670	ENSGT00940000153169.A.b.b.a.a.b #8	ENSGT00940000156660 #9	ENSGT00390000013285.b #10	ENSGT00390000013285.a #11	ENSGT00940000156721 #12	ENSGT00940000160597 #13	ENSGT00940000153745.b #14	ENSGT00940000154108.b.a.a #15	ENSGT00940000160003 #17	ENSGT00390000017004.a.a #18	ENSGT00950000183088.a.b.b #19	ENSGT00390000005218 #20	ENSGT00390000004446 #21	ENSGT00930000150973.B #22	ENSGT01030000234542.b.a.a.b.a.b.k.a.a	ENSGT00940000158244 #23	ENSGT00940000154950 #24	ENSGT00530000069080 #25	ENSGT00940000162188 #26	ENSGT00390000009613.b #29	ENSGT00940000157370 #30	ENSGT00940000157714 #31	ENSGT00940000159984.h #32	ENSGT00940000159660 #33	ENSGT00390000008294.e.a ##36	ENSGT00390000001376.hb #37	ENSGT00390000008294.e.b.a.b #36	ENSGT00390000001376.gb.b.a #37	ENSGT00940000157910
Bos_a	ANCESTRAL SPECIES	33	ENSGT00940000158625	ENSGT00390000001670	ENSGT00940000153169.A.b.b.a.a.b #8	ENSGT00940000156660 #9	ENSGT00390000013285.b #10	ENSGT00390000013285.a #11	ENSGT00940000156721 #12	ENSGT00940000160597 #13	ENSGT00940000153745.b #14	ENSGT00940000154108.b.a.a #15	ENSGT00940000160003 #17	ENSGT00390000017004.a.a #18	ENSGT00950000183088.a.b.b #19	ENSGT00390000005218 #20	ENSGT00390000004446 #21	ENSGT00930000150973.B #22	ENSGT01030000234542.b.a.a.b.a.b.k.a.a	ENSGT00940000158244 #23	ENSGT00940000154950 #24	ENSGT00530000069080 #25	ENSGT00940000162188 #26	ENSGT00390000009613.b #29	ENSGT00940000157370 #30	ENSGT00940000157714 #31	ENSGT00940000159984.h #32	ENSGT00940000159660 #33	ENSGT00390000008294.e.a ##36	ENSGT00390000001376.hb #37	ENSGT00390000001376.gb.b.a #37	ENSGT00940000157910	ENSGT00940000159823
Domestic yak	MODERN SPECIES	25	ENSBGRG00000003445 #9	SLC9B1 (ENSBGRG00000003476) #10	ENSBGRG00000003544	SLC9B2 (ENSBGRG00000003559) #11	BDH2 (ENSBGRG00000003634) #12	CENPE (ENSBGRG00000003703) #13	TACR3 (ENSBGRG00000004143) #14	CXXC4 (ENSBGRG00000004201) #15	ENSBGRG00000004252	ENSBGRG00000004264 #17	PPA2 (ENSBGRG00000004326) #18	ENSBGRG00000004739	ARHGEF38 (ENSBGRG00000004759) #19	INTS12 (ENSBGRG00000004828) #20	GSTCD (ENSBGRG00000004892) #21	NPNT (ENSBGRG00000005082) #22	ENSBGRG00000005997	TBCK (ENSBGRG00000006065) #23	AIMP1 (ENSBGRG00000006343) #24	ENSBGRG00000006455	GIMD1 (ENSBGRG00000006470) #25	DKK2 (ENSBGRG00000006499) #26	PAPSS1 (ENSBGRG00000006562) #29	SGMS2 (ENSBGRG00000006674) #30	CYP2U1 (ENSBGRG00000006714) #31	HADH (ENSBGRG00000006801) #32	LEF1 (ENSBGRG00000006944) #33	ENSBGRG00000000373 ##36	ENSBGRG00000000413 #37	ETNPPL (ENSBGRG00000000493)	COL25A1 (ENSBGRG00000000622)
Wild yak	MODERN SPECIES	2067																NPNT (ENSBMUG00000021752) #22
Bos_b	ANCESTRAL SPECIES	14	ENSGT00940000158625	ENSGT00390000001670	ENSGT00940000153169.A.b.b.a.b ##8	ENSGT00940000156660 #9	ENSGT00390000013285.b #10	ENSGT00390000013285.a #11	ENSGT00940000156721 #12	ENSGT00940000160597 #13	ENSGT00940000153745.b #14	ENSGT00940000154108.b.a.a #15	ENSGT00940000160003 #17	ENSGT00390000017004.a.a #18	ENSGT00950000183088.a.b.b #19	ENSGT00390000005218 #20	ENSGT00390000004446 #21	ENSGT00930000150973.B #22	ENSGT01030000234542.b.a.a.b.a.b.k.a.a	ENSGT00940000158244 #23	ENSGT00940000154950 #24	ENSGT00530000069080 #25	ENSGT00940000162188 #26	ENSGT00390000009613.b #29	ENSGT00940000157370 #30	ENSGT00940000157714 #31	ENSGT00940000159984.h #32	ENSGT00940000159660 #33	ENSGT00390000008294.e.b.a.b #36	ENSGT00390000001376.gb.b.a #37	ENSGT00940000157910	ENSGT00940000159823	ENSGT00940000165227.b
Hybrid Bos Indicus	MODERN SPECIES	25	MANBA (ENSBIXG00005007221)	ENSBIXG00005003816 ##8	CISD2 (ENSBIXG00005022417) #9	SLC9B1 (ENSBIXG00005022449) #10	ENSBIXG00005022459	SLC9B2 (ENSBIXG00005022532) #11	BDH2 (ENSBIXG00005003847) #12	CENPE (ENSBIXG00005023145) #13	TACR3 (ENSBIXG00005003965) #14	CXXC4 (ENSBIXG00005006473) #15	TET2 (ENSBIXG00005023404) #17	PPA2 (ENSBIXG00005023652) #18	ARHGEF38 (ENSBIXG00005023707) #19	INTS12 (ENSBIXG00005023740) #20	GSTCD (ENSBIXG00005023858) #21	NPNT (ENSBIXG00005004120) #22	ENSBIXG00005024147	ENSBIXG00005024159	TBCK (ENSBIXG00005024271) #23	AIMP1 (ENSBIXG00005024391) #24	GIMD1 (ENSBIXG00005024421) #25	ENSBIXG00005024432	DKK2 (ENSBIXG00005024455) #26	ENSBIXG00005004183	PAPSS1 (ENSBIXG00005024610) #29	SGMS2 (ENSBIXG00005024656) #30	CYP2U1 (ENSBIXG00005024695) #31	HADH (ENSBIXG00005024749) #32	LEF1 (ENSBIXG00005024848) #33	ENSBIXG00005004244	ENSBIXG00005024929 ##36
Cow	MODERN SPECIES	25	NFKB1 (ENSBTAG00000020270)	MANBA (ENSBTAG00000019761)	UBE2D3 (ENSBTAG00000048761) ##8	CISD2 (ENSBTAG00000027630) #9	SLC9B1 (ENSBTAG00000009673) #10	SLC9B2 (ENSBTAG00000040088) #11	BDH2 (ENSBTAG00000002526) #12	CENPE (ENSBTAG00000009035) #13	TACR3 (ENSBTAG00000016247) #14	CXXC4 (ENSBTAG00000001751) #15	TET2 (ENSBTAG00000017682) #17	PPA2 (ENSBTAG00000002428) #18	ARHGEF38 (ENSBTAG00000008797) #19	INTS12 (ENSBTAG00000033648) #20	GSTCD (ENSBTAG00000013927) #21	NPNT (ENSBTAG00000006686) #22	ENSBTAG00000046270	ENSBTAG00000054813	TBCK (ENSBTAG00000004227) #23	AIMP1 (ENSBTAG00000004230) #24	GIMD1 (ENSBTAG00000047891) #25	ENSBTAG00000054885	DKK2 (ENSBTAG00000012969) #26	PAPSS1 (ENSBTAG00000012961) #29	SGMS2 (ENSBTAG00000016805) #30	CYP2U1 (ENSBTAG00000012972) #31	HADH (ENSBTAG00000002049) #32	LEF1 (ENSBTAG00000006844) #33	RPL34 (ENSBTAG00000014226) #36	OSTC (ENSBTAG00000011611) #37	ETNPPL (ENSBTAG00000010284)
American bison	MODERN SPECIES	3179	ENSBBBG00000000478 #8	CISD2 (ENSBBBG00000000463) #9	SLC9B1 (ENSBBBG00000000406) #10	SLC9B2 (ENSBBBG00000023217) #11	BDH2 (ENSBBBG00000023239) #12	CENPE (ENSBBBG00000023492) #13	TACR3 (ENSBBBG00000023533) #14	CXXC4 (ENSBBBG00000023543) #15	TET2 (ENSBBBG00000023584) #17	ENSBBBG00000023593	PPA2 (ENSBBBG00000023722) #18	ENSBBBG00000023735 #19	ENSBBBG00000023754 #19	INTS12 (ENSBBBG00000023775) #20	GSTCD (ENSBBBG00000023812) #21	NPNT (ENSBBBG00000024092) #22	ENSBBBG00000006275	TBCK (ENSBBBG00000024428) #23	AIMP1 (ENSBBBG00000006380) #24	GIMD1 (ENSBBBG00000024493) #25	DKK2 (ENSBBBG00000006389) #26
Siberian musk deer	MODERN SPECIES	1271	MANBA (ENSMMSG00000021993)	ENSMMSG00000022059 #8	CISD2 (ENSMMSG00000022259) #9	SLC9B1 (ENSMMSG00000022269) #10	SLC9B2 (ENSMMSG00000022300) #11	BDH2 (ENSMMSG00000022337) #12	CENPE (ENSMMSG00000022396) #13	TACR3 (ENSMMSG00000022619) #14	CXXC4 (ENSMMSG00000022630) #15	TET2 (ENSMMSG00000022639) #17	PPA2 (ENSMMSG00000022699) #18	ENSMMSG00000022844 #19	ENSMMSG00000022850 #19	INTS12 (ENSMMSG00000022865) #20	GSTCD (ENSMMSG00000022879) #21	NPNT (ENSMMSG00000022907) #22	TBCK (ENSMMSG00000022970) #23	AIMP1 (ENSMMSG00000023001) #24	GIMD1 (ENSMMSG00000023007) #25	DKK2 (ENSMMSG00000023012) #26	ENSMMSG00000023019	PAPSS1 (ENSMMSG00000023028) #29	SGMS2 (ENSMMSG00000023045) #30	CYP2U1 (ENSMMSG00000023053) #31	HADH (ENSMMSG00000023062) #32	LEF1 (ENSMMSG00000023098) #33	ENSMMSG00000023187 ##36	ENSMMSG00000023201 #37	ETNPPL (ENSMMSG00000023216)	COL25A1 (ENSMMSG00000023350)	ENSMMSG00000023809
Yarkand deer	DUPLICATION
Yarkand deer	MODERN SPECIES	8	SEC24B (ENSCHYG00000021070)	COL25A1 (ENSCHYG00000023049)	ETNPPL (ENSCHYG00000024949)	OSTC (ENSCHYG00000025020) #37	ENSCHYG00000025066	ENSCHYG00000025081 ##36	LEF1 (ENSCHYG00000025171) #33	HADH (ENSCHYG00000025336) #32	CYP2U1 (ENSCHYG00000025388) #31	ENSCHYG00000025488 #29	ENSCHYG00000025558 #26	ENSCHYG00000025585 #25	ENSCHYG00000025597 #24	ENSCHYG00000025630 #23	ENSCHYG00000025656 #21	ENSCHYG00000025703 #22	ENSCHYG00000025833	ENSCHYG00000025860 #23	ENSCHYG00000025869	ENSCHYG00000025878 #24	ENSCHYG00000025908 #25	ENSCHYG00000025921 #26	ENSCHYG00000025950 #29	ENSCHYG00000025992 #21	ENSCHYG00000026020 #22	ENSCHYG00000026120 #21	INTS12 (ENSCHYG00000026129) #20	ENSCHYG00000026139 #19	ENSCHYG00000026162 #19	PPA2 (ENSCHYG00000026198) #18	ENSCHYG00000026368
Yarkand deer	MODERN SPECIES	8	ENSCHYG00000025488 #29	ENSCHYG00000025558 #26	ENSCHYG00000025585 #25	ENSCHYG00000025597 #24	ENSCHYG00000025630 #23	ENSCHYG00000025656 #21	ENSCHYG00000025703 #22	ENSCHYG00000025833	ENSCHYG00000025860 #23	ENSCHYG00000025869	ENSCHYG00000025878 #24	ENSCHYG00000025908 #25	ENSCHYG00000025921 #26	ENSCHYG00000025950 #29	ENSCHYG00000025992 #21	ENSCHYG00000026020 #22	ENSCHYG00000026120 #21	INTS12 (ENSCHYG00000026129) #20	ENSCHYG00000026139 #19	ENSCHYG00000026162 #19	PPA2 (ENSCHYG00000026198) #18	ENSCHYG00000026368	TET2 (ENSCHYG00000026386) #17	CXXC4 (ENSCHYG00000026410) #15	ENSCHYG00000026424	TACR3 (ENSCHYG00000026435) #14	ENSCHYG00000026448	ENSCHYG00000026451	CENPE (ENSCHYG00000026499) #13	BDH2 (ENSCHYG00000026562) #12	SLC9B2 (ENSCHYG00000026582) #11
Camelidae	ANCESTRAL SPECIES	20	ENSGT00390000001670	ENSGT00940000153169.A.b.b.a.a.b #8	ENSGT00940000153169.A.b.b.a.a.a.b.k.b ##8	ENSGT00940000156660 #9	ENSGT00390000013285.b #10	ENSGT00390000013285.a #11	ENSGT00940000156721 #12	ENSGT00940000160597 #13	ENSGT00940000153745.b #14	ENSGT00940000154108.b.a.a #15	ENSGT00940000160003 #17	ENSGT00390000017004.a.a #18	ENSGT00950000183088.a.b.b #19	ENSGT00390000005218 #20	ENSGT00390000004446 #21	ENSGT00930000150973.B #22	ENSGT00940000158244 #23	ENSGT00940000154950 #24	ENSGT00530000069080 #25	ENSGT00940000162188 #26	ENSGT00390000009613.b #29	ENSGT00940000157370 #30	ENSGT00940000157714 #31	ENSGT00940000159984 #32	ENSGT00940000159660 #33	ENSGT00390000008294.e.a ##36	ENSGT00390000001376 #37	ENSGT00940000157910	ENSGT00940000159823	ENSGT00950000182924.B.a.a	ENSGT00940000158059
Arabian camel	MODERN SPECIES	11	MANBA (ENSCDRG00005016346)	UBE2D3 (ENSCDRG00005016164) #8	ENSCDRG00005016130 #9	SLC9B1 (ENSCDRG00005016066) #10	SLC9B2 (ENSCDRG00005015736) #11	BDH2 (ENSCDRG00005015643) #12	CENPE (ENSCDRG00005014722) #13	TACR3 (ENSCDRG00005014652) #14	CXXC4 (ENSCDRG00005014613) #15	TET2 (ENSCDRG00005014485) #17	PPA2 (ENSCDRG00005014375) #18	ENSCDRG00005014335 #19	ARHGEF38 (ENSCDRG00005014226) #19	INTS12 (ENSCDRG00005014189) #20	GSTCD (ENSCDRG00005014076) #21	NPNT (ENSCDRG00005013395) #22	TBCK (ENSCDRG00005013156) #23	AIMP1 (ENSCDRG00005013076) #24	GIMD1 (ENSCDRG00005013046) #25	DKK2 (ENSCDRG00005012999) #26	PAPSS1 (ENSCDRG00005012902) #29	SGMS2 (ENSCDRG00005012842) #30	CYP2U1 (ENSCDRG00005012785) #31	HADH (ENSCDRG00005012655) #32	LEF1 (ENSCDRG00005012067) #33	ENSCDRG00005012022	ENSCDRG00005011976 ##36	OSTC (ENSCDRG00005011891) #37	ETNPPL (ENSCDRG00005011685)	COL25A1 (ENSCDRG00005010697)	SEC24B (ENSCDRG00005010364)
Alpaca	MODERN SPECIES	715													ENSVPAG00000003918 #19	INTS12 (ENSVPAG00000003921) #20	GSTCD (ENSVPAG00000003923) #21	NPNT (ENSVPAG00000003927) #22	TBCK (ENSVPAG00000003932) #23	AIMP1 (ENSVPAG00000003941) #24
Laurasiatheria_b	ANCESTRAL SPECIES	8	ENSGT00940000158625	ENSGT00390000001670	ENSGT00940000153169.A.b.b.a.a.b #8	ENSGT00940000156660 #9	ENSGT00390000013285.b #10	ENSGT00390000013285.a #11	ENSGT00940000156721 #12	ENSGT00940000160597 #13	ENSGT00940000153745.b #14	ENSGT00940000154108.b.a.a #15	ENSGT00940000160003 #17	ENSGT00390000017004.a.a #18	ENSGT00950000183088.a.b.b #19	ENSGT00390000005218 #20	ENSGT00390000004446 #21	ENSGT00930000150973.B #22	ENSGT00940000158244 #23	ENSGT00940000169429	ENSGT00940000154950 #24	ENSGT00530000069080 #25	ENSGT00940000162188 #26	ENSGT00390000009613.b #29	ENSGT00940000157370 #30	ENSGT00940000157714 #31	ENSGT00940000159984 #32	ENSGT00940000159660 #33	ENSGT00390000008294.e.b.a.a ##36	ENSGT00390000008294.f ##36	ENSGT00390000001376.db #37	ENSGT00940000157910	ENSGT00940000159823
Carnivora	ANCESTRAL SPECIES	5	ENSGT00940000158625	ENSGT00390000001670	ENSGT00940000153169.A.b.b.a.a.b #8	ENSGT00940000156660 #9	ENSGT00390000013285.b #10	ENSGT00390000013285.a #11	ENSGT00940000156721 #12	ENSGT00940000160597 #13	ENSGT00940000153745.b #14	ENSGT00940000154108.b.a.a #15	ENSGT00940000160003 #17	ENSGT00390000017004.a.a #18	ENSGT00950000183088.a.b.b #19	ENSGT00390000005218 #20	ENSGT00390000004446 #21	ENSGT00930000150973.B #22	ENSGT00940000158244 #23	ENSGT00940000169429	ENSGT00940000154950 #24	ENSGT00530000069080 #25	ENSGT00940000162188 #26	ENSGT00390000009613.b #29	ENSGT00940000157370 #30	ENSGT00940000157714 #31	ENSGT00940000159984 #32	ENSGT00940000159660 #33	ENSGT00390000008294.e.b.a.a ##36	ENSGT00390000001376.db #37	ENSGT00940000157910	ENSGT00940000159823	ENSGT00950000182924.B.a.a
Caniformia	ANCESTRAL SPECIES	7	ENSGT00390000001670	ENSGT00940000153169.A.b.b.a.b ##8	ENSGT00940000153169.A.b.b.a.a.a.b.l.h ##8	ENSGT00940000156660 #9	ENSGT00390000013285.b #10	ENSGT00390000013285.a #11	ENSGT00940000156721 #12	ENSGT00940000160597 #13	ENSGT00940000153745.b #14	ENSGT00940000154108.b.a.a #15	ENSGT00940000160003 #17	ENSGT00390000017004.a.a #18	ENSGT00950000183088.a.b.b #19	ENSGT00390000005218 #20	ENSGT00390000004446 #21	ENSGT00930000150973.B #22	ENSGT00940000158244 #23	ENSGT00940000169429	ENSGT00940000154950 #24	ENSGT00530000069080 #25	ENSGT00940000162188 #26	ENSGT00390000009613.b #29	ENSGT00940000157370 #30	ENSGT00940000157714 #31	ENSGT00940000159984 #32	ENSGT00940000159660 #33	ENSGT00390000008294.f ##36	ENSGT00390000008294.e.b.a.a ##36	ENSGT00390000001376.db.g #37	ENSGT00940000157910	ENSGT00940000159823
Caniformia_b	ANCESTRAL SPECIES	5	ENSGT00390000001670	ENSGT00940000153169.A.b.b.a.b ##8	ENSGT00940000153169.A.b.b.a.a.a.b.l.h ##8	ENSGT00940000156660 #9	ENSGT00390000013285.b #10	ENSGT00390000013285.a #11	ENSGT00940000156721 #12	ENSGT00940000160597 #13	ENSGT00940000153745.b #14	ENSGT00940000154108.b.a.a #15	ENSGT00940000160003 #17	ENSGT00390000017004.a.a #18	ENSGT00950000183088.a.b.b #19	ENSGT00390000005218 #20	ENSGT00390000004446 #21	ENSGT00930000150973.B #22	ENSGT00940000158244 #23	ENSGT00940000169429	ENSGT00940000154950 #24	ENSGT00530000069080 #25	ENSGT00940000162188 #26	ENSGT00390000009613.b #29	ENSGT00940000157370 #30	ENSGT00940000157714 #31	ENSGT00940000159984 #32	ENSGT00940000159660 #33	ENSGT00390000008294.f ##36	ENSGT00390000001376.db.g #37	ENSGT00940000157910	ENSGT00940000159823	ENSGT00950000182924.B.a.a
Ursidae	ANCESTRAL SPECIES	17	ENSGT00390000001670	ENSGT00940000153169.A.b.b.a.a.a.a ##8	ENSGT00940000153169.A.b.b.a.a.a.b.l.h ##8	ENSGT00940000156660 #9	ENSGT00390000013285.b #10	ENSGT00390000013285.a #11	ENSGT00940000156721 #12	ENSGT00940000160597 #13	ENSGT00940000153745.b #14	ENSGT00940000154108.b.a.a #15	ENSGT00940000160003 #17	ENSGT00390000017004.a.a #18	ENSGT00950000183088.a.b.b #19	ENSGT00390000005218 #20	ENSGT00390000004446 #21	ENSGT00930000150973.B #22	ENSGT00940000158244 #23	ENSGT00940000169429	ENSGT00940000154950 #24	ENSGT00530000069080 #25	ENSGT00940000162188 #26	ENSGT00390000009613.b #29	ENSGT00940000157370 #30	ENSGT00940000157714 #31	ENSGT00940000159984 #32	ENSGT00940000159660 #33	ENSGT00390000008294.e.b.a.a ##36	ENSGT00390000008294.f ##36	ENSGT00390000001376.db.g #37	ENSGT00940000157910	ENSGT00940000159823
Ursus	ANCESTRAL SPECIES	74									ENSGT00940000153745.b #14	ENSGT00940000154108.b.a.a #15	ENSGT00940000160003 #17	ENSGT00390000017004.a.a #18	ENSGT00950000183088.a.b.b #19	ENSGT00390000005218 #20	ENSGT00390000004446 #21	ENSGT00930000150973.B #22	ENSGT00940000158244 #23	ENSGT00940000169429	ENSGT00940000154950 #24	ENSGT00530000069080 #25	ENSGT00940000162188 #26	ENSGT00390000009613.b #29	ENSGT00940000157370 #30	ENSGT00940000157714 #31	ENSGT00940000159984 #32	ENSGT00940000159660.e #33	ENSGT00390000008294.e.b.a.a ##36	ENSGT00390000008294.f ##36	ENSGT00390000001376.db.g #37	ENSGT00940000157910	ENSGT00950000182924.B.a.a
American black bear	MODERN SPECIES	1526																NPNT (ENSUAMG00000024665) #22	ENSUAMG00000024669 #23	ENSUAMG00000024675	AIMP1 (ENSUAMG00000024676) #24	GIMD1 (ENSUAMG00000024677) #25
Polar bear	MODERN SPECIES	159						ENSUMAG00000022552 #12	ENSUMAG00000022584	TACR3 (ENSUMAG00000022594) #14	ENSUMAG00000022604	CXXC4 (ENSUMAG00000022608) #15	TET2 (ENSUMAG00000022620) #17	PPA2 (ENSUMAG00000022641) #18	ARHGEF38 (ENSUMAG00000022647) #19	INTS12 (ENSUMAG00000022654) #20	GSTCD (ENSUMAG00000022658) #21	NPNT (ENSUMAG00000022667) #22	TBCK (ENSUMAG00000000081) #23	AIMP1 (ENSUMAG00000000180) #24	GIMD1 (ENSUMAG00000000374) #25	DKK2 (ENSUMAG00000000387) #26	PAPSS1 (ENSUMAG00000000397) #29	SGMS2 (ENSUMAG00000000407) #30	CYP2U1 (ENSUMAG00000000418) #31	HADH (ENSUMAG00000000448) #32	LEF1 (ENSUMAG00000000609) #33	ENSUMAG00000000631 ##36	OSTC (ENSUMAG00000000640) #37	ETNPPL (ENSUMAG00000000654)	SEC24B (ENSUMAG00000000694)	MCUB (ENSUMAG00000000708)	ENSUMAG00000000755
Giant Panda	MODERN SPECIES	2	SLC39A8 (ENSAMEG00000008820)	NFKB1 (ENSAMEG00000008882)	ENSAMEG00000008948	ENSAMEG00000024813 ##8	ENSAMEG00000008999 #9	ENSAMEG00000009001 #10	ENSAMEG00000031215 #12	CENPE (ENSAMEG00000026415) #13	ENSAMEG00000024936	CXXC4 (ENSAMEG00000011282) #15	TET2 (ENSAMEG00000006878) #17	PPA2 (ENSAMEG00000006850) #18	ARHGEF38 (ENSAMEG00000017435) #19	INTS12 (ENSAMEG00000017448) #20	GSTCD (ENSAMEG00000017457) #21	NPNT (ENSAMEG00000017465) #22	TBCK (ENSAMEG00000017479) #23	AIMP1 (ENSAMEG00000017499) #24	GIMD1 (ENSAMEG00000017505) #25	DKK2 (ENSAMEG00000024962) #26	PAPSS1 (ENSAMEG00000001893) #29	SGMS2 (ENSAMEG00000001890) #30	CYP2U1 (ENSAMEG00000001857) #31	HADH (ENSAMEG00000001814) #32	LEF1 (ENSAMEG00000001768) #33	RPL34 (ENSAMEG00000001758) ##36	OSTC (ENSAMEG00000001753) #37	ETNPPL (ENSAMEG00000001726)	COL25A1 (ENSAMEG00000001701)	SEC24B (ENSAMEG00000001636)	MCUB (ENSAMEG00000004507)
Mustelinae	ANCESTRAL SPECIES	50	ENSGT00390000001670	ENSGT00940000153169.A.b.b.a.a.a.b.l.h ##8	ENSGT00940000153169.A.b.b.a.b ##8	ENSGT00940000156660 #9	ENSGT00390000013285.b #10	ENSGT00390000013285.a #11	ENSGT00940000156721 #12	ENSGT00940000160597 #13	ENSGT00940000153745.b #14	ENSGT00940000154108.b.a.a #15	ENSGT00940000160003 #17	ENSGT00390000017004.a.a.o #18	ENSGT00950000183088.a.b.b #19	ENSGT00390000005218 #20	ENSGT00390000004446 #21	ENSGT00930000150973.B #22	ENSGT00940000158244 #23	ENSGT00940000154950 #24	ENSGT00530000069080 #25	ENSGT00940000162188 #26	ENSGT00390000009613.b #29	ENSGT00940000157370 #30	ENSGT00940000157714 #31	ENSGT00940000159984 #32	ENSGT00940000159660 #33	ENSGT00390000008294.f ##36	ENSGT00390000001376.db.f.b #37	ENSGT00940000157910	ENSGT00940000159823	ENSGT00730000111880	ENSGT00950000182924.B.a.a
American mink	MODERN SPECIES	23	ENSNVIG00000005060	ENSNVIG00000005070 ##8	CISD2 (ENSNVIG00000005264) #9	SLC9B1 (ENSNVIG00000005277) #10	SLC9B2 (ENSNVIG00000005327) #11	BDH2 (ENSNVIG00000005439) #12	CENPE (ENSNVIG00000005466) #13	TACR3 (ENSNVIG00000005688) #14	ENSNVIG00000005696	TET2 (ENSNVIG00000005706) #17	ENSNVIG00000005750 #18	ENSNVIG00000005869 #19	ENSNVIG00000005878 #19	INT12 (ENSNVIG00000005902) #20	GSTCD (ENSNVIG00000005920) #21	NPNT (ENSNVIG00000005955) #22	TBCK (ENSNVIG00000006152) #23	AIMP1 (ENSNVIG00000006299) #24	GIMD1 (ENSNVIG00000006313) #25	DKK2 (ENSNVIG00000006330) #26	PAPSS1 (ENSNVIG00000006373) #29	SGMS2 (ENSNVIG00000006393) #30	ENSNVIG00000006431	ENSNVIG00000006446	CYP2U1 (ENSNVIG00000006464) #31	ENSNVIG00000006476	Lef-1 (ENSNVIG00000006522) #33	ENSNVIG00000006689 ##36	OSTC (ENSNVIG00000006710) #37	ETNPPL (ENSNVIG00000006726)	COL25A1 (ENSNVIG00000006813)
Ferret	MODERN SPECIES	184	NFKB1 (ENSMPUG00000009413)	MANBA (ENSMPUG00000009400)	UBE2D3 (ENSMPUG00000009395) ##8	CISD2 (ENSMPUG00000009365) #9	SLC9B1 (ENSMPUG00000009323) #10	SLC9B2 (ENSMPUG00000009252) #11	BDH2 (ENSMPUG00000009245) #12	CENPE (ENSMPUG00000009191) #13	TACR3 (ENSMPUG00000009183) #14	CXXC4 (ENSMPUG00000009175) #15	TET2 (ENSMPUG00000009162) #17	PPA2 (ENSMPUG00000009047) #18	ARHGEF38 (ENSMPUG00000009003) #19	INTS12 (ENSMPUG00000008999) #20	GSTCD (ENSMPUG00000008991) #21	NPNT (ENSMPUG00000008978) #22	TBCK (ENSMPUG00000008962) #23	AIMP1 (ENSMPUG00000008952) #24	GIMD1 (ENSMPUG00000008944) #25	DKK2 (ENSMPUG00000008937) #26	PAPSS1 (ENSMPUG00000008920) #29	ENSMPUG00000008916	SGMS2 (ENSMPUG00000008910) #30	CYP2U1 (ENSMPUG00000008902) #31	HADH (ENSMPUG00000008891) #32	LEF1 (ENSMPUG00000008884) #33	ENSMPUG00000008873 ##36	OSTC (ENSMPUG00000008869) #37	ETNPPL (ENSMPUG00000008782)	COL25A1 (ENSMPUG00000008679)	ENSMPUG00000008674
Canidae	ANCESTRAL SPECIES	40	ENSGT00940000158625	ENSGT00390000001670	ENSGT00940000153169.A.b.b.a.b ##8	ENSGT00940000156660 #9	ENSGT00390000013285.b #10	ENSGT00390000013285.a #11	ENSGT00940000156721 #12	ENSGT00940000160597 #13	ENSGT00940000153745.b #14	ENSGT00940000154108.b.a.a #15	ENSGT00940000160003 #17	ENSGT00390000017004.a.a.r #18	ENSGT00950000183088.a.b.b #19	ENSGT00390000005218 #20	ENSGT00390000004446 #21	ENSGT00930000150973.B #22	ENSGT00940000158244 #23	ENSGT00940000169429	ENSGT00940000154950.q #24	ENSGT00530000069080 #25	ENSGT00940000162188 #26	ENSGT00390000009613.b #29	ENSGT00940000157370 #30	ENSGT00940000157714 #31	ENSGT00940000159984 #32	ENSGT00940000159660 #33	ENSGT00390000001376.cb.a #37	ENSGT00940000157910	ENSGT00940000159823	ENSGT00950000182924.B.a.a	ENSGT00940000158059
Canis_lupus	ANCESTRAL SPECIES	30	ENSGT00940000156660 #9	ENSGT00390000013285.b #10	ENSGT00390000013285.a #11	ENSGT00940000156721 #12	ENSGT00940000160597 #13	ENSGT00390000000360.r.c.b	ENSGT00940000153745.b #14	ENSGT00940000155098.ib.a	ENSGT00940000154108.b.a.a #15	ENSGT00940000160003 #17	ENSGT00390000017004.a.a.r #18	ENSGT00390000017004.a.a.q.b #18	ENSGT00950000183088.a.b.b #19	ENSGT00390000005218 #20	ENSGT00390000004446 #21	ENSGT00930000150973.B #22	ENSGT00940000158244 #23	ENSGT00940000169429	ENSGT00940000154950.q #24	ENSGT00530000069080 #25	ENSGT00940000162188 #26	ENSGT00390000009613.b #29	ENSGT00940000157370 #30	ENSGT00940000157714 #31	ENSGT00940000159984 #32	ENSGT00940000159660 #33	ENSGT00390000015789.c.b	ENSGT00940000157910	ENSGT00940000159823	ENSGT00950000182924.B.a.a	ENSGT00940000158059
Dog	MODERN SPECIES	25	SLC9B1 (ENSCAFG00845026564) #10	SLC9B2 (ENSCAFG00845026669) #11	BDH2 (ENSCAFG00845026813) #12	CENPE (ENSCAFG00845026923) #13	ENSCAFG00845027250	ENSCAFG00845027271	TACR3 (ENSCAFG00845027311) #14	ENSCAFG00845027379	CXXC4 (ENSCAFG00845027434) #15	TET2 (ENSCAFG00845027576) #17	ENSCAFG00845027670 #18	ARHGEF38 (ENSCAFG00845027848) #19	INTS12 (ENSCAFG00845028090) #20	GSTCD (ENSCAFG00845028155) #21	ENSCAFG00845028217	NPNT (ENSCAFG00845028293) #22	TBCK (ENSCAFG00845028525) #23	AIMP1 (ENSCAFG00845028734) #24	GIMD1 (ENSCAFG00845028766) #25	DKK2 (ENSCAFG00845028785) #26	PAPSS1 (ENSCAFG00845028839) #29	SGMS2 (ENSCAFG00845028905) #30	ENSCAFG00845028935 #31	HADH (ENSCAFG00845029127) #32	LEF1 (ENSCAFG00845029249) #33	ENSCAFG00845029318	RPL34 (ENSCAFG00845029396) ##36	OSTC (ENSCAFG00845029437) #37	ETNPPL (ENSCAFG00845029485)	COL25A1 (ENSCAFG00845029602)	SEC24B (ENSCAFG00845029793)
Dingo	MODERN SPECIES	308													ARHGEF38 (ENSCAFG00020009907) #19	INTS12 (ENSCAFG00020009912) #20	GSTCD (ENSCAFG00020009920) #21	NPNT (ENSCAFG00020009929) #22	ENSCAFG00020009967 #23	ENSCAFG00020009987	AIMP1 (ENSCAFG00020009990) #24	GIMD1 (ENSCAFG00020009998) #25	ENSCAFG00020010004	ENSCAFG00020010008	DKK2 (ENSCAFG00020010010) #26	ENSCAFG00020010027 #29	SGMS2 (ENSCAFG00020010038) #30	CYP2U1 (ENSCAFG00020010041) #31	HADH (ENSCAFG00020010045) #32	LEF1 (ENSCAFG00020010052) #33	ENSCAFG00020010057	ENSCAFG00020010061 ##36	ENSCAFG00020010062 #37
Red fox	MODERN SPECIES	137									ENSVVUG00000017126	CXXC4 (ENSVVUG00000017137) #15	TET2 (ENSVVUG00000017141) #17	PPA2 (ENSVVUG00000017145) #18	ARHGEF38 (ENSVVUG00000017158) #19	INTS12 (ENSVVUG00000017161) #20	GSTCD (ENSVVUG00000017171) #21	NPNT (ENSVVUG00000017188) #22	TBCK (ENSVVUG00000017257) #23	AIMP1 (ENSVVUG00000017317) #24	GIMD1 (ENSVVUG00000017326) #25	DKK2 (ENSVVUG00000017331) #26	ENSVVUG00000017338	PAPSS1 (ENSVVUG00000017360) #29	SGMS2 (ENSVVUG00000017400) #30	CYP2U1 (ENSVVUG00000017417) #31	HADH (ENSVVUG00000017423) #32	LEF1 (ENSVVUG00000017446) #33	ENSVVUG00000017498	ENSVVUG00000017509 #37	ETNPPL (ENSVVUG00000017512)	SEC24B (ENSVVUG00000017541)	PLA2G12A (ENSVVUG00000017587)
Felidae	ANCESTRAL SPECIES	4	ENSGT00940000153524.b.a.b.j.b	ENSGT00390000001670	ENSGT00940000153169.A.b.b.a.a.b #8	ENSGT00940000156660 #9	ENSGT00390000013285.b #10	ENSGT00390000013285.a #11	ENSGT00940000156721 #12	ENSGT00940000160597 #13	ENSGT00940000153745.b #14	ENSGT00940000154108.b.a.a #15	ENSGT00940000160003 #17	ENSGT00390000017004.a.a #18	ENSGT00950000183088.a.b.b #19	ENSGT00390000005218 #20	ENSGT00390000004446 #21	ENSGT00930000150973.B #22	ENSGT00940000158244 #23	ENSGT00940000154950 #24	ENSGT00530000069080 #25	ENSGT00940000162188 #26	ENSGT00390000009613.b #29	ENSGT00940000157370 #30	ENSGT00940000157714 #31	ENSGT00940000159984 #32	ENSGT00940000159660 #33	ENSGT00390000008294.e.b.a.a ##36	ENSGT00390000001376.db #37	ENSGT00940000157910	ENSGT00940000159823	ENSGT00950000182924.B.a.a	ENSGT00940000158059
Panthera	ANCESTRAL SPECIES	5	ENSGT00940000153524.b.a.b.j.b	ENSGT00390000001670	ENSGT00940000153169.A.b.b.a.a.b #8	ENSGT00940000156660 #9	ENSGT00390000013285.b #10	ENSGT00390000013285.a #11	ENSGT00940000156721 #12	ENSGT00940000160597 #13	ENSGT00940000153745.b #14	ENSGT00940000154108.b.a.a #15	ENSGT00940000160003 #17	ENSGT00390000017004.a.a #18	ENSGT00950000183088.a.b.b #19	ENSGT00390000005218 #20	ENSGT00390000004446 #21	ENSGT00930000150973.B #22	ENSGT00940000158244 #23	ENSGT00940000154950.p #24	ENSGT00530000069080 #25	ENSGT00940000162188 #26	ENSGT00390000009613.b #29	ENSGT00940000157370 #30	ENSGT00940000157714 #31	ENSGT00940000159984 #32	ENSGT00940000159660 #33	ENSGT00390000008294.e.b.a.a ##36	ENSGT00390000001376.db #37	ENSGT00940000157910	ENSGT00940000159823	ENSGT00950000182924.B.a.a	ENSGT00940000158059
Tiger	MODERN SPECIES	153	UBE2D3 (ENSPTIG00000006732) #8	CISD2 (ENSPTIG00000006007) #9	SLC9B1 (ENSPTIG00000021212) #10	SLC9B2 (ENSPTIG00000016010) #11	BDH2 (ENSPTIG00000014878) #12	CENPE (ENSPTIG00000022071) #13	TACR3 (ENSPTIG00000022047) #14	ENSPTIG00000022032	CXXC4 (ENSPTIG00000021964) #15	TET2 (ENSPTIG00000021334) #17	PPA2 (ENSPTIG00000017640) #18	ENSPTIG00000017051 #19	ENSPTIG00000015847 #19	INTS12 (ENSPTIG00000008665) #20	GSTCD (ENSPTIG00000006784) #21	NPNT (ENSPTIG00000017103) #22	TBCK (ENSPTIG00000011334) #23	ENSPTIG00000008163 #24	GIMD1 (ENSPTIG00000007315) #25
Panthera_a	ANCESTRAL SPECIES	2	ENSGT00940000153524.b.a.b.j.b	ENSGT00390000001670	ENSGT00940000153169.A.b.b.a.a.b #8	ENSGT00940000156660 #9	ENSGT00390000013285.b #10	ENSGT00390000013285.a #11	ENSGT00940000156721 #12	ENSGT00940000160597 #13	ENSGT00940000153745.b #14	ENSGT00940000154108.b.a.a #15	ENSGT00940000160003 #17	ENSGT00390000017004.a.a #18	ENSGT00950000183088.a.b.b #19	ENSGT00390000005218 #20	ENSGT00390000004446 #21	ENSGT00930000150973.B #22	ENSGT00940000158244 #23	ENSGT00940000154950.p #24	ENSGT00530000069080 #25	ENSGT00940000162188 #26	ENSGT00390000009613.b #29	ENSGT00940000157370 #30	ENSGT00940000157714 #31	ENSGT00940000159984 #32	ENSGT00940000159660 #33	ENSGT00390000008294.e.b.a.a ##36	ENSGT00390000001376.db #37	ENSGT00940000157910	ENSGT00940000159823	ENSGT00950000182924.B.a.a	ENSGT00940000158059
leopard	MODERN SPECIES	3	ENSPPRG00000000294 #8	CISD2 (ENSPPRG00000024527) #9	SLC9B1 (ENSPPRG00000024578) #10	SLC9B2 (ENSPPRG00000018446) #11	BDH2 (ENSPPRG00000013357) #12	CENPE (ENSPPRG00000012778) #13	TACR3 (ENSPPRG00000003966) #14	ENSPPRG00000003687	CXXC4 (ENSPPRG00000002765) #15	TET2 (ENSPPRG00000002345) #17	PPA2 (ENSPPRG00000000625) #18	ENSPPRG00000016640 #19	ENSPPRG00000015602 #19	INTS12 (ENSPPRG00000014557) #20	GSTCD (ENSPPRG00000012754) #21	NPNT (ENSPPRG00000010205) #22	TBCK (ENSPPRG00000006296) #23	ENSPPRG00000003078 #24	GIMD1 (ENSPPRG00000002041) #25	DKK2 (ENSPPRG00000001046) #26	ENSPPRG00000000898	PAPSS1 (ENSPPRG00000022612) #29	ENSPPRG00000022924	SGMS2 (ENSPPRG00000023391) #30	CYP2U1 (ENSPPRG00000022125) #31	HADH (ENSPPRG00000020822) #32	LEF1 (ENSPPRG00000015396) #33	ENSPPRG00000013513 ##36	ENSPPRG00000012933 #37	ETNPPL (ENSPPRG00000012486)	COL25A1 (ENSPPRG00000010801)
lion	MODERN SPECIES	4	ENSPLOG00000010526 #9	SLC9B1 (ENSPLOG00000010391) #10	SLC9B2 (ENSPLOG00000010338) #11	ENSPLOG00000010277 #12	ENSPLOG00000010240 #12	CENPE (ENSPLOG00000009681) #13	TACR3 (ENSPLOG00000009533) #14	CXXC4 (ENSPLOG00000009493) #15	TET2 (ENSPLOG00000009422) #17	PPA2 (ENSPLOG00000009179) #18	ENSPLOG00000009093	ENSPLOG00000009051 #19	ENSPLOG00000008987 #19	INTS12 (ENSPLOG00000008950) #20	GSTCD (ENSPLOG00000008867) #21	NPNT (ENSPLOG00000008713) #22	TBCK (ENSPLOG00000008554) #23	AIMP1 (ENSPLOG00000008460) #24	GIMD1 (ENSPLOG00000008434) #25	DKK2 (ENSPLOG00000008392) #26	ENSPLOG00000008380	PAPSS1 (ENSPLOG00000008350) #29	SGMS2 (ENSPLOG00000008317) #30	CYP2U1 (ENSPLOG00000008280) #31	HADH (ENSPLOG00000008215) #32	LEF1 (ENSPLOG00000007905) #33	ENSPLOG00000007832 ##36	OSTC (ENSPLOG00000007801) #37	ETNPPL (ENSPLOG00000007649)	COL25A1 (ENSPLOG00000005916)	SEC24B (ENSPLOG00000005625)
Cat	MODERN SPECIES	235	MANBA (ENSFCAG00000007558)	UBE2D3 (ENSFCAG00000024918) #8	CISD2 (ENSFCAG00000028054) #9	SLC9B2 (ENSFCAG00000022518) #11	BDH2 (ENSFCAG00000024693) #12	CENPE (ENSFCAG00000003525) #13	TACR3 (ENSFCAG00000038901) #14	CXXC4 (ENSFCAG00000044981) #15	TET2 (ENSFCAG00000029436) #17	ENSFCAG00000051746 #17	PPA2 (ENSFCAG00000028660) #18	ENSFCAG00000044090 #19	ENSFCAG00000026961 #19	INTS12 (ENSFCAG00000027227) #20	GSTCD (ENSFCAG00000024646) #21	NPNT (ENSFCAG00000023889) #22	TBCK (ENSFCAG00000014486) #23	AIMP1 (ENSFCAG00000012896) #24	GIMD1 (ENSFCAG00000036567) #25	DKK2 (ENSFCAG00000043481) #26	ENSFCAG00000034912	SGMS2 (ENSFCAG00000012289) #30	PAPSS1 (ENSFCAG00000007221) #29	CYP2U1 (ENSFCAG00000015335) #31	HADH (ENSFCAG00000022260) #32	LEF1 (ENSFCAG00000027039) #33	RPL34 (ENSFCAG00000015502) ##36	OSTC (ENSFCAG00000040199) #37	ETNPPL (ENSFCAG00000002319)	ENSFCAG00000050516	COL25A1 (ENSFCAG00000041813)
Laurasiatheria_c	ANCESTRAL SPECIES	8	ENSGT00390000001670	ENSGT00940000153169.A.b.b.a.a.a.a ##8	ENSGT00940000153169.A.b.b.a.a.b #8	ENSGT00940000156660 #9	ENSGT00390000013285.b #10	ENSGT00390000013285.a #11	ENSGT00940000156721 #12	ENSGT00940000160597 #13	ENSGT00940000153745.b #14	ENSGT00940000154108.b.a.a #15	ENSGT00940000160003 #17	ENSGT00390000017004.a.a #18	ENSGT00950000183088.a.b.b #19	ENSGT00390000005218 #20	ENSGT00390000004446 #21	ENSGT00930000150973.B #22	ENSGT00940000158244 #23	ENSGT00940000154950 #24	ENSGT00530000069080 #25	ENSGT00940000162188 #26	ENSGT00390000009613.b #29	ENSGT00940000157370 #30	ENSGT00940000157714 #31	ENSGT00940000159984 #32	ENSGT00940000159660 #33	ENSGT00390000008294.f ##36	ENSGT00390000001376.db #37	ENSGT00940000157910	ENSGT00940000159823	ENSGT00950000182924.B.a.a	ENSGT00940000158059
Equus	ANCESTRAL SPECIES	24									ENSGT00940000153745.b #14	ENSGT00940000154108.b.a.a #15	ENSGT00940000160003 #17	ENSGT00390000017004.a.a #18	ENSGT00950000183088.a.b.b #19	ENSGT00390000005218 #20	ENSGT00390000004446 #21	ENSGT00930000150973.B #22	ENSGT00940000158244 #23	ENSGT00940000154950.w #24	ENSGT00530000069080 #25	ENSGT00940000162188 #26	ENSGT00390000009613.b #29	ENSGT00390000012976.c.a.a	ENSGT00940000157370 #30	ENSGT00940000157714 #31	ENSGT00940000159984 #32	ENSGT00940000159660 #33	ENSGT00390000008294.f ##36	ENSGT00390000001376.db #37	ENSGT00940000157910	ENSGT00940000159823	ENSGT00950000182924.B.a.a
Horse	MODERN SPECIES	11									TACR3 (ENSECAG00000012284) #14	CXXC4 (ENSECAG00000030032) #15	TET2 (ENSECAG00000004773) #17	PPA2 (ENSECAG00000011236) #18	INTS12 (ENSECAG00000010911) #20	ARHGEF38 (ENSECAG00000011171) #19	GSTCD (ENSECAG00000009590) #21	NPNT (ENSECAG00000008518) #22	TBCK (ENSECAG00000006577) #23	AIMP1 (ENSECAG00000006138) #24	DKK2 (ENSECAG00000032911) #26	PAPSS1 (ENSECAG00000021678) #29	ENSECAG00000032757	SGMS2 (ENSECAG00000021665) #30	CYP2U1 (ENSECAG00000048143) #31	CYP2U1 (ENSECAG00000021232) #32	ENSECAG00000057434	LEF1 (ENSECAG00000019975) #33	RPL34 (ENSECAG00000019719) ##36	OSTC (ENSECAG00000019709) #37	ETNPPL (ENSECAG00000018724)	COL25A1 (ENSECAG00000017518)	SEC24B (ENSECAG00000016518)
Donkey	MODERN SPECIES	22	ENSEASG00005024511 #12	ENSEASG00005028214 #12	ENSEASG00005030321	ENSEASG00005030723	ENSEASG00005033165	ENSEASG00005024192	ENSEASG00005037471	ENSEASG00005004456 #14	CXXC4 (ENSEASG00005024013) #15	TET2 (ENSEASG00005004466) #17	PPA2 (ENSEASG00005004477) #18	ENSEASG00005033358	ARHGEF38 (ENSEASG00005004487) #19	INTS12 (ENSEASG00005004498) #20	GSTCD (ENSEASG00005004503) #21	NPNT (ENSEASG00005004514) #22	TBCK (ENSEASG00005004526) #23	ENSEASG00005004535 #24	ENSEASG00005004539 #25	DKK2 (ENSEASG00005028714) #26	PAPSS1 (ENSEASG00005004544) #29	ENSEASG00005033971	SGMS2 (ENSEASG00005004553) #30	CYP2U1 (ENSEASG00005004558) #31	HADH (ENSEASG00005004564) #32	LEF1 (ENSEASG00005004575) #33	ENSEASG00005004585 ##36	OSTC (ENSEASG00005034695) #37	ETNPPL (ENSEASG00005004593)	COL25A1 (ENSEASG00005036242)	SEC24B (ENSEASG00005004609)
Chiroptera	ANCESTRAL SPECIES	9	ENSGT00940000158625	ENSGT00390000001670	ENSGT00940000153169.A.b.b.a.a.b #8	ENSGT00940000156660 #9	ENSGT00390000013285.b #10	ENSGT00390000013285.a #11	ENSGT00940000156721 #12	ENSGT00940000160597 #13	ENSGT00940000153745.b #14	ENSGT00940000154108.b.a.a #15	ENSGT00940000160003 #17	ENSGT00390000017004.a.a #18	ENSGT00950000183088.a.b.b #19	ENSGT00390000005218 #20	ENSGT00390000004446 #21	ENSGT00930000150973.B #22	ENSGT00940000158244 #23	ENSGT00940000154950 #24	ENSGT00530000069080 #25	ENSGT00940000162188 #26	ENSGT00940000164073	ENSGT00390000009613.b #29	ENSGT00940000157370 #30	ENSGT00940000157714 #31	ENSGT00940000159984 #32	ENSGT00940000159660 #33	ENSGT00390000008294.e.b.a.a ##36	ENSGT00390000008294.f ##36	ENSGT00390000001376.db #37	ENSGT00940000157910	ENSGT00940000159823
Megabat	MODERN SPECIES	873												PPA2 (ENSPVAG00000009321) #18	ENSPVAG00000009323 #19	INTS12 (ENSPVAG00000009324) #20	GSTCD (ENSPVAG00000009325) #21	NPNT (ENSPVAG00000009326) #22
Microchiroptera	ANCESTRAL SPECIES	10	ENSGT00940000158926	ENSGT00940000158625	ENSGT00390000001670	ENSGT00940000153169.A.b.b.a.a.b #8	ENSGT00940000156660 #9	ENSGT00390000013285.b #10	ENSGT00390000013285.a #11	ENSGT00940000156721 #12	ENSGT00940000153745.b #14	ENSGT00940000154108.b.a.a #15	ENSGT00940000160003 #17	ENSGT00390000017004.a.a #18	ENSGT00950000183088.a.b.b #19	ENSGT00390000005218 #20	ENSGT00390000004446 #21	ENSGT00930000150973.B #22	ENSGT00940000158244 #23	ENSGT00940000154950 #24	ENSGT00530000069080 #25	ENSGT00940000162188 #26	ENSGT00940000164073	ENSGT00390000009613.b #29	ENSGT00940000157370 #30	ENSGT00940000157714 #31	ENSGT00940000159984 #32	ENSGT00940000159660 #33	ENSGT00390000008294.e.b.a.a ##36	ENSGT00390000008294.f ##36	ENSGT00390000001376.db #37	ENSGT00940000157910	ENSGT00940000159823
Greater horseshoe bat	MODERN SPECIES	23	ENSRFEG00010002271 #8	CISD2 (ENSRFEG00010002373) #9	SLC9B1 (ENSRFEG00010002407) #10	SLC9B2 (ENSRFEG00010002465) #11	BDH2 (ENSRFEG00010002530) #12	TACR3 (ENSRFEG00010002586) #14	CXXC4 (ENSRFEG00010002603) #15	ENSRFEG00010002626	TET2 (ENSRFEG00010002647) #17	PPA2 (ENSRFEG00010002712) #18	ENSRFEG00010002822	ENSRFEG00010002834 #19	ENSRFEG00010002852 #19	INTS12 (ENSRFEG00010002886) #20	GSTCD (ENSRFEG00010002920) #21	NPNT (ENSRFEG00010003048) #22	TBCK (ENSRFEG00010003168) #23	ENSRFEG00010003218 #24	GIMD1 (ENSRFEG00010003248) #25	DKK2 (ENSRFEG00010003271) #26	PAPSS1 (ENSRFEG00010003368) #29	SGMS2 (ENSRFEG00010003389) #30	ENSRFEG00010003401	CYP2U1 (ENSRFEG00010003430) #31	LEF1 (ENSRFEG00010003558) #33	ENSRFEG00010003676	ENSRFEG00010003688 ##36	OSTC (ENSRFEG00010003698) #37	ETNPPL (ENSRFEG00010003723)	COL25A1 (ENSRFEG00010003938)	SEC24B (ENSRFEG00010004287)
Microbat	MODERN SPECIES	1119									PPA2 (ENSMLUG00000005152) #18	ENSMLUG00000030260	ENSMLUG00000011747 #19	ENSMLUG00000023068	ENSMLUG00000025094 #19	ENSMLUG00000011757 #20	GSTCD (ENSMLUG00000007230) #21	NPNT (ENSMLUG00000016107) #22	ENSMLUG00000027019	TBCK (ENSMLUG00000012409) #23	AIMP1 (ENSMLUG00000009560) #24	GIMD1 (ENSMLUG00000029629) #25	ENSMLUG00000002976	PAPSS1 (ENSMLUG00000000837) #29	SGMS2 (ENSMLUG00000000844) #30	CYP2U1 (ENSMLUG00000008831) #31	HADH (ENSMLUG00000008844) #32	LEF1 (ENSMLUG00000008891) #33	ENSMLUG00000025715
Atlantogenata	ANCESTRAL SPECIES	57	ENSGT00940000158625	ENSGT00390000001670	ENSGT00940000153169.A.b.b.a.a #8	ENSGT00940000156660 #9	ENSGT00390000013285.b #10	ENSGT00390000013285.a #11	ENSGT00940000156721 #12	ENSGT00940000160597 #13	ENSGT00940000153745.b #14	ENSGT00940000154108.b.a.a #15	ENSGT00940000160003 #17	ENSGT00390000017004.a.a #18	ENSGT00950000183088.a.b.b #19	ENSGT00390000005218 #20	ENSGT00390000004446 #21	ENSGT00930000150973.B #22	ENSGT00940000158244 #23	ENSGT00940000154950 #24	ENSGT00530000069080 #25	ENSGT00940000162188 #26	ENSGT00390000009613.b #29	ENSGT00940000157370 #30	ENSGT00940000157714 #31	ENSGT00940000159984 #32	ENSGT00940000159660 #33	ENSGT00390000008294.f ##36	ENSGT00390000001376 #37	ENSGT00940000157910	ENSGT00940000159823	ENSGT00730000111880	ENSGT00950000182924.B.a.a
Xenarthra	ANCESTRAL SPECIES	55											ENSGT00940000160003 #17	ENSGT00390000017004.a.a #18	ENSGT00950000183088.a.b.b #19	ENSGT00390000005218 #20	ENSGT00390000004446 #21	ENSGT00930000150973.B #22	ENSGT00940000158244 #23	ENSGT00940000154950 #24	ENSGT00530000069080 #25	ENSGT00940000162188 #26	ENSGT00390000009613.b #29	ENSGT00940000157370 #30	ENSGT00940000157714 #31	ENSGT00940000159984 #32	ENSGT00940000159660 #33	ENSGT00390000008294.f ##36	ENSGT00390000001376 #37	ENSGT00940000157910	ENSGT00940000159823	ENSGT00730000111880	ENSGT00950000182924.B.a.a
Armadillo	MODERN SPECIES	3508										ENSDNOG00000041521 #17	ENSDNOG00000012327 #18	ENSDNOG00000031837	ARHGEF38 (ENSDNOG00000031825) #19	INTS12 (ENSDNOG00000041045) #20	GSTCD (ENSDNOG00000010872) #21	NPNT (ENSDNOG00000047147) #22	ENSDNOG00000033067	TBCK (ENSDNOG00000010062) #23	AIMP1 (ENSDNOG00000039310) #24	GIMD1 (ENSDNOG00000037621) #25	ENSDNOG00000035061	DKK2 (ENSDNOG00000039230) #26	PAPSS1 (ENSDNOG00000003032) #29	ENSDNOG00000044160	SGMS2 (ENSDNOG00000048393) #30	CYP2U1 (ENSDNOG00000000863) #31	HADH (ENSDNOG00000000868) #32	LEF1 (ENSDNOG00000019529) #33	ENSDNOG00000011179 ##36	OSTC (ENSDNOG00000011172) #37	ETNPPL (ENSDNOG00000014825)
Sloth	MODERN SPECIES	5667																NPNT (ENSCHOG00000002969) #22
Afrotheria	ANCESTRAL SPECIES	67	ENSGT00940000158926	ENSGT00940000158625	ENSGT00390000001670	ENSGT00940000153169.A.b.b.a.a #8	ENSGT00940000156660 #9	ENSGT00390000013285.b #10	ENSGT00390000013285.a #11	ENSGT00940000156721 #12	ENSGT00940000160597 #13	ENSGT00940000153745.b #14	ENSGT00940000154108.b.a.a #15	ENSGT00940000160003 #17	ENSGT00950000183088.a.b.b #19	ENSGT00390000005218 #20	ENSGT00390000004446 #21	ENSGT00930000150973.B #22	ENSGT00940000158244 #23	ENSGT00940000154950 #24	ENSGT00530000069080 #25	ENSGT00940000162188 #26	ENSGT00390000009613.b #29	ENSGT00940000157370 #30	ENSGT00940000157714 #31	ENSGT00940000159984 #32	ENSGT00940000159660 #33	ENSGT00390000008294.f ##36	ENSGT00390000001376 #37	ENSGT00940000157910	ENSGT00940000159823	ENSGT00950000182924.B.a.a	ENSGT00940000158059
Afrotheria_a	ANCESTRAL SPECIES	62	ENSGT00940000158926	ENSGT00940000158625	ENSGT00390000001670	ENSGT00940000153169.A.b.b.a.a #8	ENSGT00940000156660 #9	ENSGT00390000013285.b #10	ENSGT00390000013285.a #11	ENSGT00940000156721 #12	ENSGT00940000160597 #13	ENSGT00940000153745.b #14	ENSGT00940000154108.b.a.a #15	ENSGT00940000160003 #17	ENSGT00950000183088.a.b.b #19	ENSGT00390000005218 #20	ENSGT00390000004446 #21	ENSGT00930000150973.B #22	ENSGT00940000158244 #23	ENSGT00940000154950 #24	ENSGT00530000069080 #25	ENSGT00940000162188 #26	ENSGT00390000009613.b #29	ENSGT00940000157370 #30	ENSGT00940000157714 #31	ENSGT00940000159984 #32	ENSGT00940000159660 #33	ENSGT00390000008294.f ##36	ENSGT00390000001376 #37	ENSGT00940000157910	ENSGT00940000159823	ENSGT00950000182924.B.a.a	ENSGT00940000158059
Elephant	MODERN SPECIES	95	SLC9B1 (ENSLAFG00000012075) #10	ENSLAFG00000013088 #11	ENSLAFG00000026776 #12	ENSLAFG00000029669 #12	ENSLAFG00000013097 #12	ENSLAFG00000026993 #11	CENPE (ENSLAFG00000017915) #13	TACR3 (ENSLAFG00000009702) #14	ENSLAFG00000030798	CXXC4 (ENSLAFG00000030012) #15	ENSLAFG00000026913 #17	ENSLAFG00000012329 #19	ENSLAFG00000031287 #19	INTS12 (ENSLAFG00000010076) #20	GSTCD (ENSLAFG00000021544) #21	NPNT (ENSLAFG00000005763) #22	TBCK (ENSLAFG00000018410) #23	AIMP1 (ENSLAFG00000012639) #24	GIMD1 (ENSLAFG00000027733) #25	DKK2 (ENSLAFG00000007133) #26	PAPSS1 (ENSLAFG00000018426) #29	SGMS2 (ENSLAFG00000016422) #30	CYP2U1 (ENSLAFG00000016424) #31	HADH (ENSLAFG00000016430) #32	LEF1 (ENSLAFG00000016434) #33	ENSLAFG00000025607	RPL34 (ENSLAFG00000032615) ##36	OSTC (ENSLAFG00000026381) #37	ETNPPL (ENSLAFG00000008666)	ENSLAFG00000008674	SEC24B (ENSLAFG00000013688)
Hyrax	MODERN SPECIES	5219																NPNT (ENSPCAG00000012756) #22
Tenrec	MODERN SPECIES	6193																NPNT (ENSETEG00000013707) #22
Marsupialia	ANCESTRAL SPECIES	7	ENSGT00940000158625	ENSGT00390000001670	ENSGT00940000153169.A.b.b.b.b ##8	ENSGT00940000156660 #9	ENSGT00390000013285.b #10	ENSGT00390000013285.a #11	ENSGT00940000156721 #12	ENSGT00940000160597 #13	ENSGT00940000153745.b #14	ENSGT00940000154108.b.a.a #15	ENSGT00940000160003 #17	ENSGT00390000017004.a.a #18	ENSGT00950000183088.a.b.b #19	ENSGT00390000005218 #20	ENSGT00390000004446 #21	ENSGT00930000150973.B #22	ENSGT00940000158244 #23	ENSGT00940000154950 #24	ENSGT00530000069080 #25	ENSGT00940000162188 #26	ENSGT00390000009613.b #29	ENSGT00940000157370 #30	ENSGT00940000157714 #31	ENSGT00940000159984 #32	ENSGT00940000159660 #33	ENSGT00390000008294.f ##36	ENSGT00390000001376 #37	ENSGT00940000157910	ENSGT00940000159823	ENSGT00950000182924.B.a.a	ENSGT00940000158059
Marsupialia_b	ANCESTRAL SPECIES	8	ENSGT00390000001670	ENSGT00940000153169.A.b.b.b.a.b ##8	ENSGT00940000153169.A.b.b.b.a.a ##8	ENSGT00940000156660 #9	ENSGT00390000013285.b #10	ENSGT00390000013285.a #11	ENSGT00940000156721 #12	ENSGT00940000160597 #13	ENSGT00940000153745.b #14	ENSGT00940000154108.b.a.a #15	ENSGT00940000160003 #17	ENSGT00390000017004.a.a #18	ENSGT00950000183088.a.b.b #19	ENSGT00390000005218 #20	ENSGT00390000004446 #21	ENSGT00930000150973.B #22	ENSGT00940000158244 #23	ENSGT00940000154950 #24	ENSGT00530000069080 #25	ENSGT00940000162188 #26	ENSGT00390000009613.b #29	ENSGT00940000157370 #30	ENSGT00940000157714 #31	ENSGT00940000159984 #32	ENSGT00940000159660 #33	ENSGT00390000008294.f ##36	ENSGT00390000001376 #37	ENSGT00940000157910	ENSGT00940000159823	ENSGT00950000182924.B.a.a	ENSGT00940000158059
Diprotodontia	ANCESTRAL SPECIES	43	ENSGT00390000001670	ENSGT00940000153169.A.b.b.b.a.b.b ##8	ENSGT00940000153169.A.b.b.b.a.a ##8	ENSGT00940000156660 #9	ENSGT00390000013285.b #10	ENSGT00390000013285.a #11	ENSGT00940000156721 #12	ENSGT00940000160597 #13	ENSGT00940000153745.b #14	ENSGT00940000154108.b.a.a #15	ENSGT00940000160003 #17	ENSGT00390000017004.a.a #18	ENSGT00950000183088.a.b.b #19	ENSGT00390000005218 #20	ENSGT00390000004446 #21	ENSGT00930000150973.B #22	ENSGT00940000158244 #23	ENSGT00940000154950 #24	ENSGT00530000069080 #25	ENSGT00940000162188 #26	ENSGT00390000009613.b #29	ENSGT00940000157370 #30	ENSGT00940000157714 #31	ENSGT00940000159984 #32	ENSGT00940000159660 #33	ENSGT00390000008294.f ##36	ENSGT00390000001376 #37	ENSGT00940000157910	ENSGT00940000159823	ENSGT00950000182924.B.a.a	ENSGT00940000158059
Diprotodontia_a	ANCESTRAL SPECIES	38	ENSGT00530000064550.A	ENSGT00390000001670	ENSGT00940000153169.A.b.b.b.a.a.b ##8	ENSGT00940000156660 #9	ENSGT00390000013285.b #10	ENSGT00390000013285.a #11	ENSGT00940000156721 #12	ENSGT00940000160597 #13	ENSGT00940000153745.b #14	ENSGT00940000154108.b.a.a #15	ENSGT00940000160003 #17	ENSGT00390000017004.a.a #18	ENSGT00950000183088.a.b.b #19	ENSGT00390000005218 #20	ENSGT00390000004446 #21	ENSGT00930000150973.B #22	ENSGT00940000158244 #23	ENSGT00940000154950 #24	ENSGT00530000069080 #25	ENSGT00940000162188 #26	ENSGT00390000009613.b #29	ENSGT00940000157370 #30	ENSGT00940000157714 #31	ENSGT00940000159984 #32	ENSGT00940000159660 #33	ENSGT00390000008294.f ##36	ENSGT00390000001376.cc #37	ENSGT00940000157910	ENSGT00940000159823	ENSGT00950000182924.B.a.a	ENSGT00940000158059
koala	MODERN SPECIES	258							CXXC4 (ENSPCIG00000031593) #15	ENSPCIG00000029758	ENSPCIG00000000618	TET2 (ENSPCIG00000000570) #17	PPA2 (ENSPCIG00000000509) #18	ENSPCIG00000000541	ARHGEF38 (ENSPCIG00000030643) #19	INTS12 (ENSPCIG00000000458) #20	GSTCD (ENSPCIG00000000415) #21	NPNT (ENSPCIG00000000294) #22	ENSPCIG00000033056	TBCK (ENSPCIG00000000191) #23	AIMP1 (ENSPCIG00000000116) #24
Common wonbat	MODERN SPECIES	1057	CISD2 (ENSVURG00010002919) #9	ENSVURG00010002925	SLC9B1 (ENSVURG00010002942) #10	SLC9B2 (ENSVURG00010003036) #11	BDH2 (ENSVURG00010003055) #12	ENSVURG00010003102 #13	ENSVURG00010003151	TACR3 (ENSVURG00010003214) #14	CXXC4 (ENSVURG00010003259) #15	TET2 (ENSVURG00010003300) #17	PPA2 (ENSVURG00010003352) #18	ENSVURG00010003395 #19	ENSVURG00010003405 #19	INTS12 (ENSVURG00010003413) #20	GSTCD (ENSVURG00010003450) #21	NPNT (ENSVURG00010003491) #22	ENSVURG00010003557	TBCK (ENSVURG00010003587) #23	AIMP1 (ENSVURG00010003631) #24	GIMD1 (ENSVURG00010003641) #25	DKK2 (ENSVURG00010003692) #26	PAPSS1 (ENSVURG00010003718) #29	SGMS2 (ENSVURG00010003757) #30	ENSVURG00010003762 #31	HADH (ENSVURG00010003794) #32	LEF1 (ENSVURG00010003819) #33	ENSVURG00010004007 ##36	ENSVURG00010004018 #37	ETNPPL (ENSVURG00010004034)	COL25A1 (ENSVURG00010004195)	SEC24B (ENSVURG00010004919)
Wallaby	MODERN SPECIES	7684																ENSMEUG00000013487 #22
Tasmanian devil	MODERN SPECIES	5	CISD2 (ENSSHAG00000027029) #9	SLC9B1 (ENSSHAG00000001046) #10	ENSSHAG00000031711 #11	BDH2 (ENSSHAG00000000467) #12	ENSSHAG00000003188 #13	TACR3 (ENSSHAG00000000949) #14	CXXC4 (ENSSHAG00000026585) #15	ENSSHAG00000026442	ENSSHAG00000004722	ENSSHAG00000030304	TET2 (ENSSHAG00000008753) #17	PPA2 (ENSSHAG00000032314) #18	ARHGEF38 (ENSSHAG00000004498) #19	INTS12 (ENSSHAG00000003546) #20	GSTCD (ENSSHAG00000000922) #21	NPNT (ENSSHAG00000001094) #22	TBCK (ENSSHAG00000008473) #23	AIMP1 (ENSSHAG00000000796) #24	GIMD1 (ENSSHAG00000008117) #25	ENSSHAG00000013376	ENSSHAG00000024554	PAPSS1 (ENSSHAG00000009182) #29	SGMS2 (ENSSHAG00000006786) #30	CYP2U1 (ENSSHAG00000005871) #31	HADH (ENSSHAG00000004987) #32	LEF1 (ENSSHAG00000028814) #33	ENSSHAG00000027242 ##36	ENSSHAG00000002342	ENSSHAG00000025927 ##36	ENSSHAG00000026968	ENSSHAG00000027128
Opossum	MODERN SPECIES	4	CISD2 (ENSMODG00000020661) #9	ENSMODG00000025524 #10	ENSMODG00000020658 #11	BDH2 (ENSMODG00000020657) #12	ENSMODG00000020656 #13	TACR3 (ENSMODG00000020652) #14	CXXC4 (ENSMODG00000050644) #15	ENSMODG00000037933	TET2 (ENSMODG00000020637) #17	PPA2 (ENSMODG00000020635) #18	ENSMODG00000044974	ARHGEF38 (ENSMODG00000020629) #19	INTS12 (ENSMODG00000020627) #20	ENSMODG00000051211	GSTCD (ENSMODG00000020626) #21	NPNT (ENSMODG00000020620) #22	TBCK (ENSMODG00000020615) #23	AIMP1 (ENSMODG00000020613) #24	GIMD1 (ENSMODG00000029257) #25	DKK2 (ENSMODG00000020612) #26	PAPSS1 (ENSMODG00000020610) #29	SGMS2 (ENSMODG00000047692) #30	CYP2U1 (ENSMODG00000020607) #31	HADH (ENSMODG00000020605) #32	LEF1 (ENSMODG00000020603) #33	ENSMODG00000049572	RPL34 (ENSMODG00000020601) ##36	OSTC (ENSMODG00000038026) #37	ENSMODG00000020597	COL25A1 (ENSMODG00000020594)	SEC24B (ENSMODG00000020587)
Platypus	MODERN SPECIES	3	ENSOANG00000012158	ENSOANG00000051249	ENSOANG00000013028	ORNANAV1R3113 (ENSOANG00000048588)	ENSOANG00000007169	ORNANAV1R3112 (ENSOANG00000046453)	ENSOANG00000020451	ENSOANG00000004493	ENSOANG00000029349 #13	CXXC4 (ENSOANG00000037582) #15	TET2 (ENSOANG00000045723) #17	PPA2 (ENSOANG00000050616) #18	ARHGEF38 (ENSOANG00000008038) #19	INTS12 (ENSOANG00000048873) #20	GSTCD (ENSOANG00000036596) #21	NPNT (ENSOANG00000002771) #22	TBCK (ENSOANG00000002772) #23	ENSOANG00000002774 #24	DKK2 (ENSOANG00000043883) #26	PAPSS1 (ENSOANG00000007746) #29	SGMS2 (ENSOANG00000037567) #30	CYP2U1 (ENSOANG00000047928) #31	HADH (ENSOANG00000007748) #32	LEF1 (ENSOANG00000002638) #33	RPL34 (ENSOANG00000007856) #36	OSTC (ENSOANG00000000770) #37	ETNPPL (ENSOANG00000009959)	SEC24B (ENSOANG00000013878)	MCUB (ENSOANG00000003662)	CASP6 (ENSOANG00000003663)	PLA2G12A (ENSOANG00000039200)
Sauria	ANCESTRAL SPECIES	6	ENSGT00940000158625	ENSGT00390000001670	ENSGT00940000153169.A.b.b #8	ENSGT00940000156660 #9	ENSGT00390000013285 #11	ENSGT00940000156721 #12	ENSGT00940000160597 #13	ENSGT00500000044869.a.a	ENSGT00940000153745.b #14	ENSGT00940000154108.b.a.a #15	ENSGT00940000160003 #17	ENSGT00390000017004.a.a #18	ENSGT00950000183088.a.b.b #19	ENSGT00390000005218 #20	ENSGT00390000004446 #21	ENSGT00930000150973.B #22	ENSGT00940000158244 #23	ENSGT00940000169429	ENSGT00940000154950 #24	ENSGT00530000069080 #25	ENSGT00940000164073	ENSGT00390000009613.b #29	ENSGT00940000157370 #30	ENSGT00940000157714 #31	ENSGT00940000159984 #32	ENSGT00940000159660 #33	ENSGT00390000008294 #36	ENSGT00390000001376 #37	ENSGT00940000157910	ENSGT00940000159823	ENSGT00950000182924.B.a.a
Archelosauria	ANCESTRAL SPECIES	4	ENSGT00940000158625	ENSGT00390000001670	ENSGT00940000153169.A.b.b #8	ENSGT00940000156660 #9	ENSGT00390000013285 #11	ENSGT00940000156721 #12	ENSGT00940000160597 #13	ENSGT00500000044869.a.a	ENSGT00940000153745.b #14	ENSGT00940000154108.b.a.a #15	ENSGT00940000160003 #17	ENSGT00390000017004.a.a #18	ENSGT00950000183088.a.b.b.q #19	ENSGT00390000005218 #20	ENSGT00390000004446 #21	ENSGT00930000150973.B #22	ENSGT00940000158244 #23	ENSGT00940000154950 #24	ENSGT00530000069080 #25	ENSGT00940000164073	ENSGT00390000009613.b #29	ENSGT00940000157370 #30	ENSGT00940000157714 #31	ENSGT00940000159984 #32	ENSGT00940000159660 #33	ENSGT00390000008294 #36	ENSGT00390000001376 #37	ENSGT00940000157910	ENSGT00940000159823	ENSGT00950000182924.B.a.a	ENSGT00940000158059
Archosauria	ANCESTRAL SPECIES	1	ENSGT00940000158625	ENSGT00390000001670	ENSGT00940000153169.A.b.b #8	ENSGT00940000156660 #9	ENSGT00390000013285 #11	ENSGT00940000156721 #12	ENSGT00940000160597 #13	ENSGT00500000044869.a.a	ENSGT00940000153745.b #14	ENSGT00940000154108.b.a.a #15	ENSGT00940000160003 #17	ENSGT00390000017004.a.a #18	ENSGT00950000183088.a.b.b.q #19	ENSGT00390000005218 #20	ENSGT00390000004446 #21	ENSGT00930000150973.B #22	ENSGT00940000158244 #23	ENSGT00940000154950 #24	ENSGT00530000069080 #25	ENSGT00940000164073	ENSGT00390000009613.b #29	ENSGT00940000157370 #30	ENSGT00940000157714 #31	ENSGT00940000159984 #32	ENSGT00940000159660 #33	ENSGT00390000008294 #36	ENSGT00390000001376 #37	ENSGT00940000157910	ENSGT00940000159823	ENSGT00950000182924.B.a.a	ENSGT00940000158059
Aves	ANCESTRAL SPECIES	3	ENSGT00940000158625	ENSGT00390000001670	ENSGT00940000153169.A.b.b #8	ENSGT00940000156660 #9	ENSGT00390000013285 #11	ENSGT00940000156721 #12	ENSGT00940000160597 #13	ENSGT00500000044869.a.a	ENSGT00940000153745.b #14	ENSGT00940000154108.b.a.a #15	ENSGT00940000160003 #17	ENSGT00390000017004.a.a #18	ENSGT00950000183088.a.b.b.q #19	ENSGT00390000005218 #20	ENSGT00390000004446 #21	ENSGT00930000150973.B #22	ENSGT00940000158244 #23	ENSGT00940000154950 #24	ENSGT00530000069080 #25	ENSGT00940000164073	ENSGT00390000009613.b #29	ENSGT00940000157370 #30	ENSGT00940000157714 #31	ENSGT00940000159984 #32	ENSGT00940000159660 #33	ENSGT00390000008294 #36	ENSGT00390000001376 #37	ENSGT00940000157910	ENSGT00940000159823	ENSGT00950000182924.B.a.a	ENSGT00940000158059
Neognathae	ANCESTRAL SPECIES	5	ENSGT00940000158625	ENSGT00390000001670	ENSGT00940000153169.A.b.b #8	ENSGT00940000156660 #9	ENSGT00390000013285 #11	ENSGT00940000156721 #12	ENSGT00940000160597 #13	ENSGT00500000044869.a.a	ENSGT00940000153745.b #14	ENSGT00940000154108.b.a.a #15	ENSGT00940000160003 #17	ENSGT00390000017004.a.a #18	ENSGT00950000183088.a.b.b.q #19	ENSGT00390000005218 #20	ENSGT00390000004446 #21	ENSGT00930000150973.B #22	ENSGT00940000158244 #23	ENSGT00940000154950 #24	ENSGT00530000069080 #25	ENSGT00940000164073	ENSGT00390000009613.b #29	ENSGT00940000157370 #30	ENSGT00940000157714 #31	ENSGT00940000159984 #32	ENSGT00940000159660 #33	ENSGT00390000008294 #36	ENSGT00390000001376 #37	ENSGT00940000157910	ENSGT00940000159823	ENSGT00950000182924.B.a.a	ENSGT00940000158059
Neognathae_b	ANCESTRAL SPECIES	4	ENSGT00940000158625	ENSGT00390000001670	ENSGT00940000153169.A.b.b #8	ENSGT00940000156660 #9	ENSGT00390000013285 #11	ENSGT00940000156721 #12	ENSGT00940000160597 #13	ENSGT00500000044869.a.a	ENSGT00940000153745.b #14	ENSGT00940000154108.b.a.a #15	ENSGT00940000160003 #17	ENSGT00390000017004.a.a #18	ENSGT00950000183088.a.b.b.q #19	ENSGT00390000005218 #20	ENSGT00390000004446 #21	ENSGT00930000150973.B #22	ENSGT00940000158244 #23	ENSGT00940000154950 #24	ENSGT00530000069080 #25	ENSGT00940000164073	ENSGT00390000009613.b #29	ENSGT00940000157370 #30	ENSGT00940000157714 #31	ENSGT00940000159984 #32	ENSGT00940000159660 #33	ENSGT00390000008294 #36	ENSGT00390000001376 #37	ENSGT00940000157910	ENSGT00940000159823	ENSGT00950000182924.B.a.a	ENSGT00940000158059
Passeriformes	ANCESTRAL SPECIES	4	ENSGT00940000158625	ENSGT00390000001670	ENSGT00940000153169.A.b.b #8	ENSGT00940000156660 #9	ENSGT00390000013285 #11	ENSGT00940000156721 #12	ENSGT00940000160597 #13	ENSGT00500000044869.a.a	ENSGT00940000153745.b #14	ENSGT00940000154108.b.a.a #15	ENSGT00940000160003 #17	ENSGT00390000017004.a.a #18	ENSGT00950000183088.a.b.b.q #19	ENSGT00390000005218 #20	ENSGT00390000004446 #21	ENSGT00930000150973.B #22	ENSGT00940000158244 #23	ENSGT00940000154950 #24	ENSGT00530000069080 #25	ENSGT00940000164073	ENSGT00390000009613.b #29	ENSGT00940000157370 #30	ENSGT00940000157714 #31	ENSGT00940000159984 #32	ENSGT00940000159660 #33	ENSGT00390000008294 #36	ENSGT00390000001376 #37	ENSGT00940000157910	ENSGT00940000159823	ENSGT00950000182924.B.a.a	ENSGT00940000158059
Great tit	MODERN SPECIES	23	BANK1 (ENSPMJG00000009709)	SLC39A8 (ENSPMJG00000009724)	NFKB1 (ENSPMJG00000009729)	MANBA (ENSPMJG00000009731)	UBE2D3 (ENSPMJG00000009734) #8	CISD2 (ENSPMJG00000009736) #9	ENSPMJG00000009737 #11	BDH2 (ENSPMJG00000009844) #12	RSPH4A (ENSPMJG00000009847)	TACR3 (ENSPMJG00000009850) #14	TET2 (ENSPMJG00000009958) #17	PPA2 (ENSPMJG00000009960) #18	ARHGEF38 (ENSPMJG00000009963) #19	INTS12 (ENSPMJG00000009965) #20	GSTCD (ENSPMJG00000009970) #21	NPNT (ENSPMJG00000010003) #22	TBCK (ENSPMJG00000010004) #23	AIMP1 (ENSPMJG00000010006) #24	GIMD1 (ENSPMJG00000010008) #25	ENSPMJG00000010015	PAPSS1 (ENSPMJG00000010017) #29	SGMS2 (ENSPMJG00000010046) #30	CYP2U1 (ENSPMJG00000010059) #31	ENSPMJG00000010064	LEF1 (ENSPMJG00000010067) #33	RPL34 (ENSPMJG00000010081) #36	OSTC (ENSPMJG00000010082) #37	ETNPPL (ENSPMJG00000010084)	COL25A1 (ENSPMJG00000010085)	SEC24B (ENSPMJG00000010105)	MCUB (ENSPMJG00000010106)
Passeriformes_d	ANCESTRAL SPECIES	4	ENSGT00940000158625	ENSGT00390000001670	ENSGT00940000153169.A.b.b #8	ENSGT00940000156660 #9	ENSGT00390000013285 #11	ENSGT00940000156721 #12	ENSGT00940000160597 #13	ENSGT00500000044869.a.a	ENSGT00940000153745.b #14	ENSGT00940000154108.b.a.a #15	ENSGT00940000160003 #17	ENSGT00390000017004.a.a #18	ENSGT00950000183088.a.b.b.q.d #19	ENSGT00390000005218 #20	ENSGT00390000004446 #21	ENSGT00930000150973.B #22	ENSGT00940000158244 #23	ENSGT00940000154950 #24	ENSGT00530000069080 #25	ENSGT00940000164073	ENSGT00390000009613.b #29	ENSGT00940000157370 #30	ENSGT00940000157714 #31	ENSGT00940000159984 #32	ENSGT00940000159660 #33	ENSGT00390000008294 #36	ENSGT00390000001376 #37	ENSGT00940000157910	ENSGT00940000159823	ENSGT00950000182924.B.a.a	ENSGT00940000158059
Flycatcher	MODERN SPECIES	22	ENSFALG00000027483	ENSFALG00000006499	FAM241A (ENSFALG00000006495)	ENSFALG00000006490	ENPEP (ENSFALG00000006488)	ELOVL6 (ENSFALG00000006485)	EGF (ENSFALG00000006468)	LRIT3 (ENSFALG00000024429)	RRH (ENSFALG00000006451)	GAR1 (ENSFALG00000024007)	CFI (ENSFALG00000006443)	PLA2G12A (ENSFALG00000023889)	CASP6 (ENSFALG00000025277)	MCUB (ENSFALG00000024811)	SEC24B (ENSFALG00000006389)	NPNT (ENSFALG00000012382) #22	TBCK (ENSFALG00000012364) #23	AIMP1 (ENSFALG00000012349) #24	GIMD1 (ENSFALG00000012345) #25	ENSFALG00000026925	PAPSS1 (ENSFALG00000012333) #29	SGMS2 (ENSFALG00000012322) #30	HADH (ENSFALG00000012296) #32	LEF1 (ENSFALG00000012250) #33	RPL34 (ENSFALG00000012235) #36	OSTC (ENSFALG00000012230) #37	ETNPPL (ENSFALG00000012226)	COL25A1 (ENSFALG00000012208)	GSTCD (ENSFALG00000008271) #21	INTS12 (ENSFALG00000008263) #20	ARHGEF38 (ENSFALG00000008256) #19
Passeriformes_g	ANCESTRAL SPECIES	5	ENSGT00940000158625	ENSGT00390000001670	ENSGT00940000153169.A.b.b #8	ENSGT00940000156660 #9	ENSGT00390000013285 #11	ENSGT00940000156721 #12	ENSGT00940000160597 #13	ENSGT00500000044869.a.a	ENSGT00940000153745.b #14	ENSGT00940000154108.b.a.a #15	ENSGT00940000160003 #17	ENSGT00390000017004.a.a #18	ENSGT00950000183088.a.b.b.q.d #19	ENSGT00390000005218 #20	ENSGT00390000004446 #21	ENSGT00930000150973.B #22	ENSGT00940000158244 #23	ENSGT00940000154950 #24	ENSGT00530000069080 #25	ENSGT00940000164073	ENSGT00390000009613.b #29	ENSGT00940000157370 #30	ENSGT00940000157714 #31	ENSGT00940000159984 #32	ENSGT00940000159660 #33	ENSGT00390000008294 #36	ENSGT00390000001376 #37	ENSGT00940000157910	ENSGT00940000159823	ENSGT00950000182924.B.a.a	ENSGT00940000158059
Medium ground finch	MODERN SPECIES	7	SLC39A8 (ENSGFOG00000003139)	NFKB1 (ENSGFOG00000003108)	MANBA (ENSGFOG00000003070)	UBE2D3 (ENSGFOG00000003043) #8	CISD2 (ENSGFOG00000003033) #9	ENSGFOG00000002992 #11	ENSGFOG00000002948 #12	ENSGFOG00000002856 #13	RSPH4A (ENSGFOG00000002828)	TACR3 (ENSGFOG00000002819) #14	TET2 (ENSGFOG00000002809) #17	PPA2 (ENSGFOG00000002788) #18	ARHGEF38 (ENSGFOG00000002702) #19	INTS12 (ENSGFOG00000002668) #20	GSTCD (ENSGFOG00000002645) #21	NPNT (ENSGFOG00000002601) #22	TBCK (ENSGFOG00000002555) #23	AIMP1 (ENSGFOG00000002541) #24	GIMD1 (ENSGFOG00000012254) #25	ENSGFOG00000012253	PAPSS1 (ENSGFOG00000012235) #29	SGMS2 (ENSGFOG00000012216) #30	CYP2U1 (ENSGFOG00000012213) #31	HADH (ENSGFOG00000012208) #32	LEF1 (ENSGFOG00000012203) #33	RPL34 (ENSGFOG00000012200) #36	OSTC (ENSGFOG00000012196) #37	ETNPPL (ENSGFOG00000012184)	SEC24B (ENSGFOG00000012147)	MCUB (ENSGFOG00000012138)	CASP6 (ENSGFOG00000012134)
Passeroidea	ANCESTRAL SPECIES	4	ENSGT00940000158625	ENSGT00390000001670	ENSGT00940000153169.A.b.b #8	ENSGT00940000156660 #9	ENSGT00390000013285 #11	ENSGT00940000156721 #12	ENSGT00940000160597 #13	ENSGT00500000044869.a.a	ENSGT00940000153745.b #14	ENSGT00940000154108.b.a.a #15	ENSGT00940000160003 #17	ENSGT00390000017004.a.a #18	ENSGT00950000183088.a.b.b.q.d #19	ENSGT00390000005218 #20	ENSGT00390000004446 #21	ENSGT00930000150973.B #22	ENSGT00940000158244 #23	ENSGT00940000154950 #24	ENSGT00530000069080 #25	ENSGT00940000164073	ENSGT00390000009613.b #29	ENSGT00940000157370 #30	ENSGT00940000157714 #31	ENSGT00940000159984 #32	ENSGT00940000159660 #33	ENSGT00390000008294 #36	ENSGT00390000001376 #37	ENSGT00940000157910	ENSGT00940000159823	ENSGT00950000182924.B.a.a	ENSGT00940000158059
Zebra finch	MODERN SPECIES	25	NFKB1 (ENSTGUG00000003595)	MANBA (ENSTGUG00000003629)	UBE2D3 (ENSTGUG00000003687) #8	CISD2 (ENSTGUG00000003707) #9	ENSTGUG00000003710 #11	RSPH4A (ENSTGUG00000025748)	TACR3 (ENSTGUG00000003770) #14	CXXC4 (ENSTGUG00000003779) #15	TET2 (ENSTGUG00000003782) #17	PPA2 (ENSTGUG00000025216) #18	ARHGEF38 (ENSTGUG00000003812) #19	INTS12 (ENSTGUG00000003817) #20	GSTCD (ENSTGUG00000003836) #21	ENSTGUG00000026761	ENSTGUG00000026067	NPNT (ENSTGUG00000003842) #22	TBCK (ENSTGUG00000003881) #23	AIMP1 (ENSTGUG00000003915) #24	GIMD1 (ENSTGUG00000003930) #25	ENSTGUG00000029730	PAPSS1 (ENSTGUG00000003942) #29	SGMS2 (ENSTGUG00000003967) #30	CYP2U1 (ENSTGUG00000003983) #31	HADH (ENSTGUG00000004004) #32	LEF1 (ENSTGUG00000004013) #33	RPL34 (ENSTGUG00000027399) #36	OSTC (ENSTGUG00000004065) #37	ETNPPL (ENSTGUG00000004067)	COL25A1 (ENSTGUG00000004089)	SEC24B (ENSTGUG00000004095)	MCUB (ENSTGUG00000004134)
Common canary	MODERN SPECIES	2	NFKB1 (ENSSCAG00000013960)	MANBA (ENSSCAG00000013500)	UBE2D3 (ENSSCAG00000013341) #8	CISD2 (ENSSCAG00000013330) #9	ENSSCAG00000013316 #11	BDH2 (ENSSCAG00000013299) #12	CENPE (ENSSCAG00000013268) #13	RSPH4A (ENSSCAG00000013234)	TACR3 (ENSSCAG00000013222) #14	TET2 (ENSSCAG00000013213) #17	PPA2 (ENSSCAG00000013205) #18	ENSSCAG00000013198 #19	ENSSCAG00000013186 #19	INTS12 (ENSSCAG00000013177) #20	GSTCD (ENSSCAG00000013167) #21	NPNT (ENSSCAG00000013160) #22	TBCK (ENSSCAG00000013134) #23	AIMP1 (ENSSCAG00000013125) #24	GIMD1 (ENSSCAG00000013123) #25	ENSSCAG00000013111	PAPSS1 (ENSSCAG00000013105) #29	SGMS2 (ENSSCAG00000013099) #30	CYP2U1 (ENSSCAG00000013091) #31	LEF1 (ENSSCAG00000013077) #33	RPL34 (ENSSCAG00000013050) #36	OSTC (ENSSCAG00000013047) #37	ETNPPL (ENSSCAG00000013044)	SEC24B (ENSSCAG00000013014)	MCUB (ENSSCAG00000013002)	CASP6 (ENSSCAG00000012997)	PLA2G12A (ENSSCAG00000012993)
Neognathae_c	ANCESTRAL SPECIES	3	ENSGT00940000158625	ENSGT00390000001670	ENSGT00940000153169.A.b.b #8	ENSGT00940000156660 #9	ENSGT00390000013285 #11	ENSGT00940000156721 #12	ENSGT00940000160597 #13	ENSGT00500000044869.a.a	ENSGT00940000153745.b #14	ENSGT00940000154108.b.a.a #15	ENSGT00940000160003 #17	ENSGT00390000017004.a.a #18	ENSGT00950000183088.a.b.b.q #19	ENSGT00390000005218 #20	ENSGT00390000004446 #21	ENSGT00930000150973.B #22	ENSGT00940000158244 #23	ENSGT00940000154950 #24	ENSGT00530000069080 #25	ENSGT00940000164073	ENSGT00390000009613.b #29	ENSGT00940000157370 #30	ENSGT00940000157714 #31	ENSGT00940000159984 #32	ENSGT00940000159660 #33	ENSGT00390000008294 #36	ENSGT00390000001376 #37	ENSGT00940000157910	ENSGT00940000159823	ENSGT00950000182924.B.a.a	ENSGT00940000158059
Kakapo	MODERN SPECIES	24	NFKB1 (ENSSHBG00005008303)	MANBA (ENSSHBG00005008674)	UBE2D3 (ENSSHBG00005008690) #8	CISD2 (ENSSHBG00005008707) #9	ENSSHBG00005008717 #11	BDH2 (ENSSHBG00005008738) #12	ENSSHBG00005008748 #13	RSPH4A (ENSSHBG00005008765)	TACR3 (ENSSHBG00005008784) #14	CXXC4 (ENSSHBG00005008801) #15	TET2 (ENSSHBG00005000703) #17	PPA2 (ENSSHBG00005010232) #18	ARHGEF38 (ENSSHBG00005010293) #19	INTS12 (ENSSHBG00005010390) #20	GSTCD (ENSSHBG00005010413) #21	NPNT (ENSSHBG00005010438) #22	TBCK (ENSSHBG00005010559) #23	ENSSHBG00005010618	AIMP1 (ENSSHBG00005010644) #24	GIMD1 (ENSSHBG00005010674) #25	ENSSHBG00005010694	PAPSS1 (ENSSHBG00005010739) #29	SGMS2 (ENSSHBG00005010783) #30	CYP2U1 (ENSSHBG00005010804) #31	HADH (ENSSHBG00005010832) #32	LEF1 (ENSSHBG00005010852) #33	RPL34 (ENSSHBG00005010895) #36	OSTC (ENSSHBG00005010930) #37	ETNPPL (ENSSHBG00005010971)	COL25A1 (ENSSHBG00005011021)	SEC24B (ENSSHBG00005011081)
Golden eagle	MODERN SPECIES		NFKB1 (ENSACCG00020005765)	MANBA (ENSACCG00020005803)	UBE2D3 (ENSACCG00020005847) #8	CISD2 (ENSACCG00020005871) #9	ENSACCG00020005885 #11	BDH2 (ENSACCG00020005913) #12	RSPH4A (ENSACCG00020005922)	ENSACCG00020005938	TACR3 (ENSACCG00020005949) #14	CXXC4 (ENSACCG00020005978) #15	TET2 (ENSACCG00020005989) #17	PPA2 (ENSACCG00020006024) #18	ARHGEF38 (ENSACCG00020006057) #19	INTS12 (ENSACCG00020006090) #20	GSTCD (ENSACCG00020006099) #21	NPNT (ENSACCG00020006122) #22	TBCK (ENSACCG00020006148) #23	AIMP1 (ENSACCG00020006181) #24	GIMD1 (ENSACCG00020006194) #25	ENSACCG00020006201	PAPSS1 (ENSACCG00020006217) #29	SGMS2 (ENSACCG00020006231) #30	CYP2U1 (ENSACCG00020006246) #31	HADH (ENSACCG00020006255) #32	LEF1 (ENSACCG00020006283) #33	RPL34 (ENSACCG00020006312) #36	OSTC (ENSACCG00020006320) #37	ETNPPL (ENSACCG00020006332)	SEC24B (ENSACCG00020006353)	MCUB (ENSACCG00020006386)	CASP6 (ENSACCG00020006394)
Galloanserae	ANCESTRAL SPECIES	5	ENSGT00940000158625	ENSGT00390000001670	ENSGT00940000153169.A.b.b #8	ENSGT00940000156660 #9	ENSGT00390000013285 #11	ENSGT00940000156721 #12	ENSGT00940000160597 #13	ENSGT00500000044869.a.a	ENSGT00940000153745.b #14	ENSGT00940000154108.b.a.a #15	ENSGT00940000160003 #17	ENSGT00390000017004.a.a #18	ENSGT00950000183088.a.b.b.q #19	ENSGT00390000005218 #20	ENSGT00390000004446 #21	ENSGT00930000150973.B #22	ENSGT00940000158244 #23	ENSGT00940000154950 #24	ENSGT00530000069080 #25	ENSGT00940000164073	ENSGT00390000009613.b #29	ENSGT00940000157370 #30	ENSGT00940000157714 #31	ENSGT00940000159984 #32	ENSGT00940000159660 #33	ENSGT00390000008294 #36	ENSGT00390000001376 #37	ENSGT00940000157910	ENSGT00940000159823	ENSGT00950000182924.B.a.a	ENSGT00940000158059
Phasianidae	ANCESTRAL SPECIES	2	ENSGT00390000015511	ENSGT00940000154508.a.a.a	ENSGT00940000160388	ENSGT00940000154622.a.a	ENSGT00390000010356	ENSGT00950000182856.a.a.b	ENSGT00390000013490	ENSGT00940000157115	ENSGT00940000153745.b #14	ENSGT00940000154108.b.a.a #15	ENSGT00940000160003 #17	ENSGT00390000017004.a.a #18	ENSGT00950000183088.a.b.b.q #19	ENSGT00390000005218 #20	ENSGT00390000004446 #21	ENSGT00930000150973.B #22	ENSGT00940000158244 #23	ENSGT00940000154950 #24	ENSGT00530000069080 #25	ENSGT00940000164073	ENSGT00390000009613.b #29	ENSGT00940000157370 #30	ENSGT00940000157714 #31	ENSGT00940000159984 #32	ENSGT00940000159660 #33	ENSGT00390000008294 #36	ENSGT00390000001376 #37	ENSGT00940000157910	ENSGT00940000159823	ENSGT00950000182924.B.a.a	ENSGT01100000263502.B.a.b
Japanese quail	MODERN SPECIES	22	CENPU (ENSCJPG00005009602)	ACSL1 (ENSCJPG00005009601)	HELT (ENSCJPG00005009600)	SLC25A4 (ENSCJPG00005009599)	CFAP97 (ENSCJPG00005009598)	SNX25 (ENSCJPG00005009597)	LRP2BP (ENSCJPG00005009596)	UFSP2 (ENSCJPG00005009595)	TACR3 (ENSCJPG00005009592) #14	CXXC4 (ENSCJPG00005009588) #15	TET2 (ENSCJPG00005009585) #17	PPA2 (ENSCJPG00005009581) #18	ARHGEF38 (ENSCJPG00005009579) #19	INTS12 (ENSCJPG00005009577) #20	GSTCD (ENSCJPG00005009576) #21	NPNT (ENSCJPG00005009552) #22	TBCK (ENSCJPG00005009551) #23	AIMP1 (ENSCJPG00005009550) #24	GIMD1 (ENSCJPG00005009549) #25	ENSCJPG00005009546	PAPSS1 (ENSCJPG00005009544) #29	SGMS2 (ENSCJPG00005009542) #30	CYP2U1 (ENSCJPG00005009541) #31	HADH (ENSCJPG00005009540) #32	LEF1 (ENSCJPG00005009539) #33	RPL34 (ENSCJPG00005009534) #36	OSTC (ENSCJPG00005009533) #37	ETNPPL (ENSCJPG00005009532)	COL25A1 (ENSCJPG00005009531)	SEC24B (ENSCJPG00005009031)	ENSCJPG00005009029
Phasianidae_b	ANCESTRAL SPECIES	4	ENSGT00390000015511	ENSGT00940000154508.a.a.a	ENSGT00940000160388	ENSGT00940000154622.a.a	ENSGT00390000010356	ENSGT00950000182856.a.a.b	ENSGT00390000013490	ENSGT00940000157115	ENSGT00940000153745.b #14	ENSGT00940000154108.b.a.a #15	ENSGT00940000160003 #17	ENSGT00390000017004.a.a #18	ENSGT00950000183088.a.b.b.q #19	ENSGT00390000005218 #20	ENSGT00390000004446 #21	ENSGT00930000150973.B #22	ENSGT00940000158244 #23	ENSGT00940000154950 #24	ENSGT00530000069080 #25	ENSGT00940000164073	ENSGT00390000009613.b.e #29	ENSGT00940000157370 #30	ENSGT00940000157714 #31	ENSGT00940000159984 #32	ENSGT00940000159660 #33	ENSGT00390000008294 #36	ENSGT00940000157910	ENSGT00940000159823	ENSGT00950000182924.B.a.a	ENSGT01100000263502.B.a.b	ENSGT00940000160278.a
Chicken	MODERN SPECIES	33	CENPU (ENSGALG00010007038)	ACSL1 (ENSGALG00010007007)	HELT (ENSGALG00010006955)	SLC25A4 (ENSGALG00010005880)	CFAP97 (ENSGALG00010005858)	SNX25 (ENSGALG00010005849)	LRP2BP (ENSGALG00010005826)	UFSP2 (ENSGALG00010005799)	TACR3 (ENSGALG00010005776) #14	CXXC4 (ENSGALG00010005768) #15	TET2 (ENSGALG00010005756) #17	PPA2 (ENSGALG00010006259) #18	ARHGEF38 (ENSGALG00010006243) #19	INTS12 (ENSGALG00010006229) #20	GSTCD (ENSGALG00010006200) #21	NPNT (ENSGALG00010006118) #22	ENSGALG00010006082	TBCK (ENSGALG00010006077) #23	AIMP1 (ENSGALG00010006049) #24	GIMD1 (ENSGALG00010006011) #25	DKK2 (ENSGALG00010005985)	PAPSS1 (ENSGALG00010005915) #29	SGMS2 (ENSGALG00010005670) #30	CYP2U1 (ENSGALG00010005656) #31	HADH (ENSGALG00010005634) #32	LEF1 (ENSGALG00010005587) #33	RPL34 (ENSGALG00010005545) #36	ETNPPL (ENSGALG00010005743)	COL25A1 (ENSGALG00010005720)	SEC24B (ENSGALG00010005692)	OPN4-1 (ENSGALG00010005533)
Turkey	MODERN SPECIES	24	ENSMGAG00000005718	ENSMGAG00000016418 #37	ENSMGAG00000002597 #36	ENSMGAG00000018344 #36	ENSMGAG00000005753 #33	ENSMGAG00000005795 #32	ENSMGAG00000005823 #31	ENSMGAG00000005865 #30	ENSMGAG00000022454 #29	ENSMGAG00000005884 #29	ENSMGAG00000005911	ENSMGAG00000005919 #24	ENSMGAG00000005915 #25	ENSMGAG00000022936	ENSMGAG00000005932 #23	ENSMGAG00000005988 #22	ENSMGAG00000006011 #21	ENSMGAG00000017109 #21	ENSMGAG00000006026 #20	ENSMGAG00000016688 #19	ENSMGAG00000006061 #18	ENSMGAG00000006097 #17	ENSMGAG00000006108 #14	ENSMGAG00000006149	ENSMGAG00000006126	SLC25A4 (ENSMGAG00000006211)	ENSMGAG00000006201	SNX25 (ENSMGAG00000006165)	ENSMGAG00000019600	ENSMGAG00000006292	ENSMGAG00000006271
Anatidae	ANCESTRAL SPECIES	46	ENSGT00940000158926	ENSGT00940000158625	ENSGT00390000001670	ENSGT00940000153169.A.b.b #8	ENSGT00940000156660 #9	ENSGT00390000013285 #11	ENSGT00940000156721 #12	ENSGT00500000044869.a.a	ENSGT00940000153745.b #14	ENSGT00940000154108.b.a.a #15	ENSGT00940000160003 #17	ENSGT00390000017004.a.a #18	ENSGT00950000183088.a.b.b.q #19	ENSGT00390000005218 #20	ENSGT00390000004446 #21	ENSGT00930000150973.B #22	ENSGT00940000158244 #23	ENSGT00940000154950 #24	ENSGT00530000069080 #25	ENSGT00940000164073	ENSGT00390000009613.b #29	ENSGT00940000157370 #30	ENSGT00940000157714 #31	ENSGT00940000159984 #32	ENSGT00940000159660.a #33	ENSGT00390000008294 #36	ENSGT00390000001376 #37	ENSGT00940000157910	ENSGT00940000159823	ENSGT00950000182924.B.a.a	ENSGT00940000158059
Duck	MODERN SPECIES	22	METTL14 (ENSAPLG00000002025)	SEC24D (ENSAPLG00000002436)	ENSAPLG00000002829	ENSAPLG00000002847	NKX6-1 (ENSAPLG00000029273)	CDS1 (ENSAPLG00000003109)	WDFY3 (ENSAPLG00000016174)	PPM1K (ENSAPLG00000001192)	TACR3 (ENSAPLG00000008661) #14	CXXC4 (ENSAPLG00000027306) #15	TET2 (ENSAPLG00000008329) #17	PPA2 (ENSAPLG00000010174) #18	ARHGEF38 (ENSAPLG00000010561) #19	INTS12 (ENSAPLG00000010592) #20	GSTCD (ENSAPLG00000016467) #21	NPNT (ENSAPLG00000004656) #22	TBCK (ENSAPLG00000005181) #23	AIMP1 (ENSAPLG00000006022) #24	GIMD1 (ENSAPLG00000006141) #25	ENSAPLG00000006144	PAPSS1 (ENSAPLG00000006191) #29	SGMS2 (ENSAPLG00000007057) #30	CYP2U1 (ENSAPLG00000007095) #31	HADH (ENSAPLG00000007402) #32	ENSAPLG00000028119 #33	ENSAPLG00000007492 #33	RPL34 (ENSAPLG00000008019) #36	OSTC (ENSAPLG00000021135) #37	ETNPPL (ENSAPLG00000008156)	COL25A1 (ENSAPLG00000008681)	SEC24B (ENSAPLG00000009250)
Pink-footed goose	MODERN SPECIES	100	SLC39A8 (ENSABRG00000010410)	NFKB1 (ENSABRG00000010226)	MANBA (ENSABRG00000008313)	UBE2D3 (ENSABRG00000008201) #8	CISD2 (ENSABRG00000008187) #9	ENSABRG00000008066 #11	BDH2 (ENSABRG00000007934) #12	RSPH4A (ENSABRG00000007847)	TACR3 (ENSABRG00000007838) #14	CXXC4 (ENSABRG00000007827) #15	TET2 (ENSABRG00000007809) #17	PPA2 (ENSABRG00000007797) #18	ARHGEF38 (ENSABRG00000007763) #19	INTS12 (ENSABRG00000007747) #20	GSTCD (ENSABRG00000007735) #21	NPNT (ENSABRG00000007707) #22	TBCK (ENSABRG00000007689) #23	AIMP1 (ENSABRG00000007685) #24	GIMD1 (ENSABRG00000007677) #25	ENSABRG00000007658	PAPSS1 (ENSABRG00000007642) #29	SGMS2 (ENSABRG00000007633) #30	CYP2U1 (ENSABRG00000007628) #31	HADH (ENSABRG00000007612) #32	LEF1 (ENSABRG00000007589) #33	RPL34 (ENSABRG00000007557) #36	OSTC (ENSABRG00000007554) #37	ETNPPL (ENSABRG00000007533)	COL25A1 (ENSABRG00000007508)	SEC24B (ENSABRG00000007477)	MCUB (ENSABRG00000007403)
African ostrich	MODERN SPECIES	1080	PPP3CA (ENSSCUG00000015173)	SLC39A8 (ENSSCUG00000015186)	NFKB1 (ENSSCUG00000015192)	MANBA (ENSSCUG00000015195)	UBE2D3 (ENSSCUG00000015197) #8	CISD2 (ENSSCUG00000015204) #9	ENSSCUG00000015206 #11	BDH2 (ENSSCUG00000015212) #12	RSPH4A (ENSSCUG00000015221)	TACR3 (ENSSCUG00000015225) #14	TET2 (ENSSCUG00000015236) #17	PPA2 (ENSSCUG00000015240) #18	ARHGEF38 (ENSSCUG00000015247) #19	INTS12 (ENSSCUG00000015251) #20	GSTCD (ENSSCUG00000015252) #21	NPNT (ENSSCUG00000015257) #22	TBCK (ENSSCUG00000015266) #23	AIMP1 (ENSSCUG00000015278) #24	GIMD1 (ENSSCUG00000015282) #25	ENSSCUG00000015290	PAPSS1 (ENSSCUG00000015430) #29	SGMS2 (ENSSCUG00000015538) #30	CYP2U1 (ENSSCUG00000015541) #31	HADH (ENSSCUG00000015545) #32	LEF1 (ENSSCUG00000015548) #33	RPL34 (ENSSCUG00000015556) #36	OSTC (ENSSCUG00000015564) #37	ETNPPL (ENSSCUG00000015569)	COL25A1 (ENSSCUG00000015582)	SEC24B (ENSSCUG00000015606)
Australian saltwater crocodile	MODERN SPECIES	32	SLC20A2 (ENSCPRG00005006224)	SMIM19 (ENSCPRG00005006222)	POMK (ENSCPRG00005006220)	HGSNAT (ENSCPRG00005006213)	INTS10 (ENSCPRG00005006186)	CSGALNACT1 (ENSCPRG00005006170)	SH2D4A (ENSCPRG00005006162)	ENSCPRG00005006159	ENSCPRG00005006150	TET2 (ENSCPRG00005006139) #17	PPA2 (ENSCPRG00005006128) #18	ENSCPRG00005006121 #19	ENSCPRG00005006102 #19	INTS12 (ENSCPRG00005006095) #20	GSTCD (ENSCPRG00005006089) #21	NPNT (ENSCPRG00005006009) #22	TBCK (ENSCPRG00005005950) #23	ENSCPRG00005005945	AIMP1 (ENSCPRG00005005940) #24	GIMD1 (ENSCPRG00005005926) #25	ENSCPRG00005005914	PAPSS1 (ENSCPRG00005005895) #29	SGMS2 (ENSCPRG00005005872) #30	CYP2U1 (ENSCPRG00005005868) #31	HADH (ENSCPRG00005005866) #32	LEF1 (ENSCPRG00005005834) #33	RPL34 (ENSCPRG00005005811) #36	OSTC (ENSCPRG00005005807) #37	ETNPPL (ENSCPRG00005005724)	SEC24B (ENSCPRG00005005675)	MCUB (ENSCPRG00005005669)
Cryptodira	ANCESTRAL SPECIES	2	ENSGT00390000001670	ENSGT00940000153169.A.b.b #8	ENSGT00940000156660 #9	ENSGT00390000013285 #11	ENSGT00940000156721 #12	ENSGT00940000160597 #13	ENSGT00500000044869.a.a	ENSGT00940000153745.b #14	ENSGT00940000154108.b.a.a #15	ENSGT00940000160003 #17	ENSGT00390000017004.a.a #18	ENSGT00950000183088.a.b.b.r.b #19	ENSGT00950000183088.a.b.b.r.a #19	ENSGT00390000005218 #20	ENSGT00390000004446 #21	ENSGT00930000150973.B #22	ENSGT00940000158244 #23	ENSGT00940000154950 #24	ENSGT00530000069080 #25	ENSGT00940000164073	ENSGT00390000009613.b #29	ENSGT00940000157370 #30	ENSGT00940000157714 #31	ENSGT00940000159984 #32	ENSGT00940000159660 #33	ENSGT00390000008294 #36	ENSGT00390000001376 #37	ENSGT00940000157910	ENSGT00940000159823	ENSGT00950000182924.B.a.a	ENSGT00940000158059
Testudinoidea	ANCESTRAL SPECIES	10	ENSGT00940000158625	ENSGT00390000001670	ENSGT00940000153169.A.b.b #8	ENSGT00940000156660 #9	ENSGT00390000013285 #11	ENSGT00940000156721 #12	ENSGT00940000160597 #13	ENSGT00500000044869.a.a	ENSGT00940000153745.b #14	ENSGT00940000154108.b.a.a #15	ENSGT00940000160003 #17	ENSGT00390000017004.a.a #18	ENSGT00950000183088.a.b.b.r.a #19	ENSGT00390000005218 #20	ENSGT00390000004446 #21	ENSGT00930000150973.B #22	ENSGT00940000158244 #23	ENSGT00940000154950 #24	ENSGT00530000069080 #25	ENSGT00940000164073	ENSGT00390000009613.b #29	ENSGT00940000157370 #30	ENSGT00940000157714 #31	ENSGT00940000159984 #32	ENSGT00940000159660 #33	ENSGT00390000008294 #36	ENSGT00390000001376 #37	ENSGT00940000157910	ENSGT00940000159823	ENSGT00950000182924.B.a.a	ENSGT00940000158059
Emydidae	ANCESTRAL SPECIES	27	ENSGT00940000162708.b.a	ENSGT00390000001670	ENSGT00940000153169.A.b.b #8	ENSGT00940000156660 #9	ENSGT00390000013285 #11	ENSGT00940000156721 #12	ENSGT00940000160597 #13	ENSGT00500000044869.a.a	ENSGT00940000153745.b #14	ENSGT00940000154108.b.a.a #15	ENSGT00940000160003 #17	ENSGT00390000017004.a.a #18	ENSGT00950000183088.a.b.b.r.a #19	ENSGT00390000005218 #20	ENSGT00390000004446 #21	ENSGT00930000150973.B #22	ENSGT00940000158244 #23	ENSGT00940000154950 #24	ENSGT00530000069080 #25	ENSGT00940000164073	ENSGT00390000009613.b #29	ENSGT00940000157370 #30	ENSGT00940000157714 #31	ENSGT00940000159984 #32	ENSGT00940000159660 #33	ENSGT00390000008294 #36	ENSGT00390000001376 #37	ENSGT00940000157910	ENSGT00940000159823	ENSGT00950000182924.B.a.a	ENSGT00940000158059
Three-toed box turtle	MODERN SPECIES	342	NFKB1 (ENSTMTG00000004447)	ENSTMTG00000004506	MANBA (ENSTMTG00000004588)	UBE2D3 (ENSTMTG00000004633) #8	CISD2 (ENSTMTG00000004659) #9	ENSTMTG00000004675 #11	BDH2 (ENSTMTG00000004717) #12	RSPH4A (ENSTMTG00000004748)	TACR3 (ENSTMTG00000004842) #14	CXXC4 (ENSTMTG00000004895) #15	TET2 (ENSTMTG00000004910) #17	PPA2 (ENSTMTG00000004947) #18	ARHGEF38 (ENSTMTG00000004983) #19	INTS12 (ENSTMTG00000005095) #20	GSTCD (ENSTMTG00000005116) #21	NPNT (ENSTMTG00000005130) #22	TBCK (ENSTMTG00000005164) #23	AIMP1 (ENSTMTG00000005223) #24	GIMD1 (ENSTMTG00000005235) #25	ENSTMTG00000005248	PAPSS1 (ENSTMTG00000005263) #29	SGMS2 (ENSTMTG00000005298) #30	CYP2U1 (ENSTMTG00000005320) #31	HADH (ENSTMTG00000005338) #32	LEF1 (ENSTMTG00000005361) #33	RPL34 (ENSTMTG00000005392) #36	OSTC (ENSTMTG00000005398) #37	ETNPPL (ENSTMTG00000005409)	SEC24B (ENSTMTG00000005496)	MCUB (ENSTMTG00000005556)	CASP6 (ENSTMTG00000005578)
painted turtle	MODERN SPECIES	734		ENSCPBG00000002805	MANBA (ENSCPBG00000003184)	UBE2D3 (ENSCPBG00000003253) #8	CISD2 (ENSCPBG00000003624) #9	ENSCPBG00000003633 #11	BDH2 (ENSCPBG00000003654) #12	CENPE (ENSCPBG00000003706) #13	RSPH4A (ENSCPBG00000003756)	TACR3 (ENSCPBG00000003765) #14	TET2 (ENSCPBG00000003794) #17	PPA2 (ENSCPBG00000003833) #18	ARHGEF38 (ENSCPBG00000003893) #19	INTS12 (ENSCPBG00000003933) #20	GSTCD (ENSCPBG00000003951) #21	NPNT (ENSCPBG00000003979) #22	TBCK (ENSCPBG00000004022) #23	AIMP1 (ENSCPBG00000004055) #24	GIMD1 (ENSCPBG00000004061) #25	ENSCPBG00000004086	PAPSS1 (ENSCPBG00000004089) #29	SGMS2 (ENSCPBG00000004101) #30	CYP2U1 (ENSCPBG00000004111) #31	HADH (ENSCPBG00000004120) #32	LEF1 (ENSCPBG00000004144) #33	ENSCPBG00000004169 #36	OSTC (ENSCPBG00000004175) #37	ETNPPL (ENSCPBG00000004186)	COL25A1 (ENSCPBG00000004206)	SEC24B (ENSCPBG00000004242)	MCUB (ENSCPBG00000004264)
Testudinidae	ANCESTRAL SPECIES	48	ENSGT00940000158926	ENSGT00940000158625	ENSGT00390000001670	ENSGT00940000153169.A.b.b #8	ENSGT00940000156660 #9	ENSGT00390000013285 #11	ENSGT00940000156721 #12	ENSGT00500000044869.a.a	ENSGT00940000153745.b #14	ENSGT00940000154108.b.a.a #15	ENSGT00940000160003 #17	ENSGT00390000017004.a.a #18	ENSGT00950000183088.a.b.b.r.a #19	ENSGT00390000005218 #20	ENSGT00390000004446 #21	ENSGT00930000150973.B #22	ENSGT00940000158244 #23	ENSGT00940000154950 #24	ENSGT00530000069080 #25	ENSGT00940000164073	ENSGT00390000009613.b #29	ENSGT00940000157370 #30	ENSGT00940000157714 #31	ENSGT00940000159984 #32	ENSGT00940000159660 #33	ENSGT00390000008294 #36	ENSGT00390000001376 #37	ENSGT00940000157910	ENSGT00950000182924.B.a.a	ENSGT00940000158059	ENSGT00940000155140
Abingdon island giant tortoise	MODERN SPECIES	1798					ENSCABG00000011771 #11	BDH2 (ENSCABG00000011765) #12	RSPH4A (ENSCABG00000011758)	TACR3 (ENSCABG00000011753) #14	TET2 (ENSCABG00000011743) #17	PPA2 (ENSCABG00000011741) #18	ENSCABG00000011738	ENSCABG00000011735 #19	ENSCABG00000011724 #19	INTS12 (ENSCABG00000011716) #20	GSTCD (ENSCABG00000011709) #21	NPNT (ENSCABG00000011588) #22	TBCK (ENSCABG00000010394) #23	AIMP1 (ENSCABG00000010364) #24	GIMD1 (ENSCABG00000010363) #25	CTSH (ENSCABG00000010198)	RASGRF1 (ENSCABG00000010185)	ENSCABG00000010178	ENSCABG00000010175	TMED3 (ENSCABG00000010171)	ENSCABG00000010161	ENSCABG00000010160	ENSCABG00000010159	ANPEP (ENSCABG00000010155)	ARPIN (ENSCABG00000010154)	ZNF710 (ENSCABG00000010153)	IDH2 (ENSCABG00000010150)
Goode s thornscrub tortoise	MODERN SPECIES	19	SLC39A8 (ENSGEVG00005005986)	NFKB1 (ENSGEVG00005006092)	MANBA (ENSGEVG00005006160)	UBE2D3 (ENSGEVG00005006188) #8	CISD2 (ENSGEVG00005006228) #9	ENSGEVG00005006240 #11	BDH2 (ENSGEVG00005006263) #12	RSPH4A (ENSGEVG00005006297)	TACR3 (ENSGEVG00005006387) #14	CXXC4 (ENSGEVG00005006439) #15	TET2 (ENSGEVG00005006468) #17	PPA2 (ENSGEVG00005006493) #18	ARHGEF38 (ENSGEVG00005006538) #19	INTS12 (ENSGEVG00005006679) #20	GSTCD (ENSGEVG00005006702) #21	NPNT (ENSGEVG00005006753) #22	TBCK (ENSGEVG00005006897) #23	AIMP1 (ENSGEVG00005007001) #24	GIMD1 (ENSGEVG00005007017) #25	ENSGEVG00005007040	PAPSS1 (ENSGEVG00005007065) #29	ENSGEVG00005007089	SGMS2 (ENSGEVG00005007106) #30	CYP2U1 (ENSGEVG00005007136) #31	HADH (ENSGEVG00005007166) #32	LEF1 (ENSGEVG00005007186) #33	ENSGEVG00005007233 #36	OSTC (ENSGEVG00005007256) #37	ETNPPL (ENSGEVG00005007272)	SEC24B (ENSGEVG00005007321)	MCUB (ENSGEVG00005007424)
Chinese turtle	MODERN SPECIES	773									CXXC4 (ENSPSIG00000010569) #15	TET2 (ENSPSIG00000010562) #17	ENSPSIG00000010263 #19	ENSPSIG00000010260 #19	PPA2 (ENSPSIG00000009817) #18	INTS12 (ENSPSIG00000009507) #20	GSTCD (ENSPSIG00000008410) #21	NPNT (ENSPSIG00000007724) #22	TBCK (ENSPSIG00000007012) #23	AIMP1 (ENSPSIG00000006524) #24	GIMD1 (ENSPSIG00000006519) #25	ENSPSIG00000006494	PAPSS1 (ENSPSIG00000006485) #29	SGMS2 (ENSPSIG00000006475) #30	CYP2U1 (ENSPSIG00000006117) #31	HADH (ENSPSIG00000006107) #32	LEF1 (ENSPSIG00000003298) #33	RPL34 (ENSPSIG00000003295) #36	OSTC (ENSPSIG00000003294) #37	ETNPPL (ENSPSIG00000003262)	COL25A1 (ENSPSIG00000003115)	ENSPSIG00000003108	ENSPSIG00000003097
Lepidosauria	ANCESTRAL SPECIES	9	ENSGT00940000158625	ENSGT00390000001670	ENSGT00940000153169.A.b.b #8	ENSGT00940000156660 #9	ENSGT00390000013285 #11	ENSGT00940000156721 #12	ENSGT00940000160597 #13	ENSGT00500000044869.a.a	ENSGT00940000153745.b #14	ENSGT00940000154108.b.a.a #15	ENSGT00940000160003 #17	ENSGT00390000017004.a.a #18	ENSGT00950000183088.a.b.b #19	ENSGT00390000005218 #20	ENSGT00390000004446 #21	ENSGT00930000150973.B #22	ENSGT00940000158244 #23	ENSGT00940000169429	ENSGT00940000154950 #24	ENSGT00530000069080 #25	ENSGT00940000164073	ENSGT00390000009613.b #29	ENSGT00940000157370 #30	ENSGT00940000157714 #31	ENSGT00940000159984 #32	ENSGT00940000159660 #33	ENSGT00390000008294 #36	ENSGT00390000001376 #37	ENSGT00940000157910	ENSGT00940000159823	ENSGT00950000182924.B.a.a
Episquamata	ANCESTRAL SPECIES	3	ENSGT00390000001670	ENSGT00940000153169.A.b.b #8	ENSGT00940000156660 #9	ENSGT00390000013285.d #11	ENSGT00390000013285.c #11	ENSGT00940000156721 #12	ENSGT00940000160597 #13	ENSGT00500000044869.a.a	ENSGT00940000153745.b #14	ENSGT00940000154108.b.a.a #15	ENSGT00940000160003 #17	ENSGT00390000017004.a.a #18	ENSGT00950000183088.a.b.b #19	ENSGT00390000005218 #20	ENSGT00390000004446 #21	ENSGT00930000150973.B #22	ENSGT00940000158244 #23	ENSGT00940000169429	ENSGT00940000154950 #24	ENSGT00530000069080 #25	ENSGT00940000164073	ENSGT00390000009613.b #29	ENSGT00940000157370 #30	ENSGT00940000157714 #31	ENSGT00940000159984 #32	ENSGT00940000159660 #33	ENSGT00390000008294 #36	ENSGT00390000001376 #37	ENSGT00940000157910	ENSGT00940000159823	ENSGT00950000182924.B.a.a
Laterata	ANCESTRAL SPECIES	9	ENSGT00390000001670	ENSGT00940000153169.A.b.b #8	ENSGT00940000156660 #9	ENSGT00390000013285.d #11	ENSGT00390000013285.c #11	ENSGT00940000156721 #12	ENSGT00940000160597 #13	ENSGT00500000044869.a.a	ENSGT00940000153745.b #14	ENSGT00940000154108.b.a.a #15	ENSGT00940000160003 #17	ENSGT00390000017004.a.a #18	ENSGT00950000183088.a.b.b #19	ENSGT00390000005218 #20	ENSGT00390000004446 #21	ENSGT00930000150973.B #22	ENSGT00940000158244 #23	ENSGT00940000154950 #24	ENSGT00530000069080 #25	ENSGT00940000164073	ENSGT00390000009613.b #29	ENSGT00940000157370 #30	ENSGT00940000157714 #31	ENSGT00940000159984 #32	ENSGT00940000159660 #33	ENSGT00390000008294 #36	ENSGT00390000001376 #37	ENSGT00940000157910	ENSGT00940000159823	ENSGT00950000182924.B.a.a	ENSGT00940000158059
Common wall lizard	MODERN SPECIES	17	ENSPMRG00000010284 #11	ENSPMRG00000010272 #11	ENSPMRG00000010265 #11	BDH2 (ENSPMRG00000010262) #12	ENSPMRG00000010259	ENSPMRG00000010251	TACR3 (ENSPMRG00000010244) #14	CXXC4 (ENSPMRG00000010237) #15	ENSPMRG00000010230	ENSPMRG00000010229 #17	ENSPMRG00000010222 #17	PPA2 (ENSPMRG00000010217) #18	ARHGEF38 (ENSPMRG00000010211) #19	INTS12 (ENSPMRG00000010205) #20	ENSPMRG00000010200 #21	NPNT (ENSPMRG00000010192) #22	ENSPMRG00000010190	TBCK (ENSPMRG00000010184) #23	AIMP1 (ENSPMRG00000010179) #24	GIMD1 (ENSPMRG00000010172) #25	ENSPMRG00000010164	ENSPMRG00000010155	PAPSS1 (ENSPMRG00000010139) #29	ENSPMRG00000010132 #30	ENSPMRG00000010126 #30	CYP2U1 (ENSPMRG00000010120) #31	HADH (ENSPMRG00000010116) #32	LEF1 (ENSPMRG00000010099) #33	RPL34 (ENSPMRG00000010091) #36	OSTC (ENSPMRG00000010088) #37	ENSPMRG00000010084
Argentine black and white tegu	MODERN SPECIES	11	UBE2D3 (ENSSMRG00000014611) #8	CISD2 (ENSSMRG00000014616) #9	ENSSMRG00000014618 #11	ENSSMRG00000014620 #11	BDH2 (ENSSMRG00000014622) #12	CENPE (ENSSMRG00000014623) #13	RSPH4A (ENSSMRG00000014624)	ENSSMRG00000014626	TACR3 (ENSSMRG00000014627) #14	CXXC4 (ENSSMRG00000014628) #15	TET2 (ENSSMRG00000014629) #17	PPA2 (ENSSMRG00000014630) #18	ARHGEF38 (ENSSMRG00000014631) #19	INTS12 (ENSSMRG00000014633) #20	GSTCD (ENSSMRG00000014634) #21	NPNT (ENSSMRG00000014635) #22	TBCK (ENSSMRG00000014636) #23	AIMP1 (ENSSMRG00000014637) #24	GIMD1 (ENSSMRG00000014638) #25	ENSSMRG00000014639	PAPSS1 (ENSSMRG00000014642) #29	ENSSMRG00000014644 #30	ENSSMRG00000014645 #30	CYP2U1 (ENSSMRG00000014648) #31	HADH (ENSSMRG00000014650) #32	LEF1 (ENSSMRG00000014653) #33	RPL34 (ENSSMRG00000014657) #36	OSTC (ENSSMRG00000014659) #37	ETNPPL (ENSSMRG00000014660)	COL25A1 (ENSSMRG00000014662)	SEC24B (ENSSMRG00000014665)
Toxicofera	ANCESTRAL SPECIES	12	ENSGT00940000158625	ENSGT00390000001670	ENSGT00940000153169.A.b.b #8	ENSGT00940000156660 #9	ENSGT00390000013285.d #11	ENSGT00390000013285.c #11	ENSGT00940000156721 #12	ENSGT00500000044869.a.a	ENSGT00940000153745.b #14	ENSGT00940000154108.b.a.a #15	ENSGT00940000160003 #17	ENSGT00390000017004.a.a #18	ENSGT00950000183088.a.b.b #19	ENSGT00390000005218 #20	ENSGT00390000004446 #21	ENSGT00930000150973.B #22	ENSGT00940000158244 #23	ENSGT00940000169429	ENSGT00940000154950 #24	ENSGT00530000069080 #25	ENSGT00940000164073	ENSGT00390000009613.b #29	ENSGT00940000157370 #30	ENSGT00940000157714 #31	ENSGT00940000159984 #32	ENSGT00940000159660 #33	ENSGT00390000008294 #36	ENSGT00390000001376 #37	ENSGT00940000157910	ENSGT00950000182924.B.a.a	ENSGT00940000158059
Elapidae	ANCESTRAL SPECIES	11	ENSGT00390000001670	ENSGT00940000153169.A.b.b #8	ENSGT00940000156660.h #9	ENSGT00390000013285.d #11	ENSGT00390000013285.c #11	ENSGT00940000156721 #12	ENSGT00500000044869.a.a	ENSGT00940000153745.b #14	ENSGT00940000154108.b.a.a #15	ENSGT00940000160003 #17	ENSGT00390000017004.a.a.d #18	ENSGT00390000017004.a.a.c #18	ENSGT00950000183088.a.b.b #19	ENSGT00390000005218 #20	ENSGT00390000004446 #21	ENSGT00930000150973.B #22	ENSGT00940000158244 #23	ENSGT00940000169429	ENSGT00940000154950 #24	ENSGT00530000069080 #25	ENSGT00940000164073	ENSGT00390000009613.b #29	ENSGT00940000157370 #30	ENSGT00940000157714 #31	ENSGT00940000166803	ENSGT00940000159660 #33	ENSGT00390000008294 #36	ENSGT00390000001376 #37	ENSGT00940000157910	ENSGT00950000182924.B.a.a	ENSGT00940000158059
Elapidae_a	ANCESTRAL SPECIES	13	ENSGT00390000001670	ENSGT00940000153169.A.b.b #8	ENSGT00940000156660.h #9	ENSGT00390000013285.d #11	ENSGT00390000013285.c #11	ENSGT00940000156721 #12	ENSGT00500000044869.a.a	ENSGT00940000153745.b #14	ENSGT00940000154108.b.a.a #15	ENSGT00940000160003 #17	ENSGT00390000017004.a.a.d #18	ENSGT00390000017004.a.a.c #18	ENSGT00950000183088.a.b.b #19	ENSGT00390000005218 #20	ENSGT00390000004446 #21	ENSGT00930000150973.B #22	ENSGT00940000158244 #23	ENSGT00940000169429	ENSGT00940000154950 #24	ENSGT00530000069080 #25	ENSGT00940000164073	ENSGT00390000009613.b #29	ENSGT00940000157370 #30	ENSGT00940000157714 #31	ENSGT00940000166803	ENSGT00940000159660 #33	ENSGT00390000008294 #36	ENSGT00390000001376 #37	ENSGT00940000157910	ENSGT00950000182924.B.a.a	ENSGT00940000158059
Acanthophiinae	ANCESTRAL SPECIES	4	ENSGT00940000158625	ENSGT00390000001670	ENSGT00940000153169.A.b.b #8	ENSGT00940000156660.h #9	ENSGT00390000013285.d #11	ENSGT00390000013285.c #11	ENSGT00940000156721 #12	ENSGT00500000044869.a.a	ENSGT00940000153745.b #14	ENSGT00940000154108.b.a.a #15	ENSGT00940000160003 #17	ENSGT00390000017004.a.a.d #18	ENSGT00950000183088.a.b.b #19	ENSGT00390000005218 #20	ENSGT00390000004446 #21	ENSGT00930000150973.B #22	ENSGT00940000158244 #23	ENSGT00940000169429	ENSGT00940000154950 #24	ENSGT00530000069080 #25	ENSGT00940000164073	ENSGT00390000009613.b #29	ENSGT00940000157370 #30	ENSGT00940000157714 #31	ENSGT00940000166803	ENSGT00940000159660 #33	ENSGT00390000008294 #36	ENSGT00390000001376 #37	ENSGT00940000157910	ENSGT00950000182924.B.a.a	ENSGT00940000158059
Mainland tiger snake	MODERN SPECIES	24										CXXC4 (ENSNSUG00000003285) #15	TET2 (ENSNSUG00000003286) #17	PPA2 (ENSNSUG00000003288) #18	ARHGEF38 (ENSNSUG00000003289) #19	INTS12 (ENSNSUG00000003290) #20	GSTCD (ENSNSUG00000003291) #21	NPNT (ENSNSUG00000003292) #22	TBCK (ENSNSUG00000003442) #23	AIMP1 (ENSNSUG00000003673) #24	GIMD1 (ENSNSUG00000003674) #25	ENSNSUG00000003675	PAPSS1 (ENSNSUG00000003676) #29	SGMS2 (ENSNSUG00000003678) #30	CYP2U1 (ENSNSUG00000003680) #31	ENSNSUG00000003683	LEF1 (ENSNSUG00000003686) #33	OSTC (ENSNSUG00000003694) #37	ETNPPL (ENSNSUG00000003698)	SEC24B (ENSNSUG00000003701)	MCUB (ENSNSUG00000003712)	CASP6 (ENSNSUG00000003715)	PLA2G12A (ENSNSUG00000003717)
Eastern brown snake	MODERN SPECIES	9	ENSPTXG00000008825 #9	ENSPTXG00000008823 #11	ENSPTXG00000008633 #11	BDH2 (ENSPTXG00000008632) #12	ENSPTXG00000008631	TACR3 (ENSPTXG00000008629) #14	ENSPTXG00000008628	ENSPTXG00000008627	CXXC4 (ENSPTXG00000008625) #15	ENSPTXG00000008624	TET2 (ENSPTXG00000008622) #17	PPA2 (ENSPTXG00000008621) #18	ARHGEF38 (ENSPTXG00000008618) #19	INTS12 (ENSPTXG00000008617) #20	GSTCD (ENSPTXG00000008614) #21	NPNT (ENSPTXG00000008095) #22	TBCK (ENSPTXG00000008085) #23	ENSPTXG00000008082	AIMP1 (ENSPTXG00000008081) #24	GIMD1 (ENSPTXG00000008078) #25	ENSPTXG00000008077	PAPSS1 (ENSPTXG00000008074) #29	SGMS2 (ENSPTXG00000008070) #30	CYP2U1 (ENSPTXG00000008068) #31	ENSPTXG00000008067	LEF1 (ENSPTXG00000008066) #33	RPL34 (ENSPTXG00000008064) #36	OSTC (ENSPTXG00000008062) #37	ETNPPL (ENSPTXG00000008058)	SEC24B (ENSPTXG00000007954)	MCUB (ENSPTXG00000007950)
Blue-lipped sea krait	MODERN SPECIES	3199																NPNT (ENSLLTG00000001588) #22
Indian cobra	MODERN SPECIES	3	ENSNNAG00000009526	MANBA (ENSNNAG00000009538)	UBE2D3 (ENSNNAG00000009606) #8	ENSNNAG00000009665 #9	ENSNNAG00000009727 #11	CISD2 (ENSNNAG00000009897) #9	ENSNNAG00000009925 #11	BDH2 (ENSNNAG00000010490) #12	RSPH4A (ENSNNAG00000010518)	TACR3 (ENSNNAG00000003004) #14	CXXC4 (ENSNNAG00000003015) #15	PPA2 (ENSNNAG00000003077) #18	ARHGEF38 (ENSNNAG00000003099) #19	INTS12 (ENSNNAG00000003130) #20	GSTCD (ENSNNAG00000003145) #21	NPNT (ENSNNAG00000003194) #22	TBCK (ENSNNAG00000003225) #23	AIMP1 (ENSNNAG00000003269) #24	GIMD1 (ENSNNAG00000003282) #25	ENSNNAG00000003290	PAPSS1 (ENSNNAG00000003306) #29	SGMS2 (ENSNNAG00000003337) #30	CYP2U1 (ENSNNAG00000003344) #31	ENSNNAG00000003350	LEF1 (ENSNNAG00000003356) #33	RPL34 (ENSNNAG00000003366) #36	OSTC (ENSNNAG00000003381) #37	ETNPPL (ENSNNAG00000003409)	SEC24B (ENSNNAG00000003515)	MCUB (ENSNNAG00000003567)	CASP6 (ENSNNAG00000003598)
Lizard	MODERN SPECIES	988								ENSACAG00000038421	ENSACAG00000041440	TET2 (ENSACAG00000008609) #17	PPA2 (ENSACAG00000008606) #18	ENSACAG00000039073 #19	ENSACAG00000008587 #19	INTS12 (ENSACAG00000008540) #20	GSTCD (ENSACAG00000008508) #21	NPNT (ENSACAG00000008437) #22	TBCK (ENSACAG00000008343) #23
tuatara	MODERN SPECIES	1600												ENSSPUG00000006574 #18	ARHGEF38 (ENSSPUG00000006509) #19	INTS12 (ENSSPUG00000006494) #20	GSTCD (ENSSPUG00000006461) #21	NPNT (ENSSPUG00000006436) #22	TBCK (ENSSPUG00000006390) #23	AIMP1 (ENSSPUG00000006369) #24	GIMD1 (ENSSPUG00000006363) #25	ENSSPUG00000006344	PAPSS1 (ENSSPUG00000006249) #29	SGMS2 (ENSSPUG00000006211) #30	CYP2U1 (ENSSPUG00000006202) #31	HADH (ENSSPUG00000006189) #32	LEF1 (ENSSPUG00000006167) #33	RPL34 (ENSSPUG00000006146) #36	ETNPPL (ENSSPUG00000006082)
Anura	ANCESTRAL SPECIES	101	ENSGT01100000263573.a.a.b	ENSGT00940000158926	ENSGT00940000158625	ENSGT00390000001670	ENSGT00940000153169.A.b.b #8	ENSGT00940000156660 #9	ENSGT00390000013285 #11	ENSGT00940000156721 #12	ENSGT00940000153745.b #14	ENSGT00940000154108.b.a.a #15	ENSGT00940000160003 #17	ENSGT00390000017004.a.a #18	ENSGT00950000183088.a.b.b #19	ENSGT00390000005218 #20	ENSGT00390000004446 #21	ENSGT00930000150973.B #22	ENSGT00940000158244 #23	ENSGT00940000154950 #24	ENSGT00530000069080 #25	ENSGT00940000164073	ENSGT00390000009613.b #29	ENSGT00940000157370 #30	ENSGT00940000157714.a #31	ENSGT00940000159984 #32	ENSGT00940000159660 #33	ENSGT00390000008294 #36	ENSGT00390000001376 #37	ENSGT00940000157910	ENSGT00940000159823	ENSGT00950000182924.B.a.a	ENSGT00940000158059
Frog	MODERN SPECIES		ube2d3 (ENSXETG00000021323) #8	cisd2 (ENSXETG00000048146) #9	slc9b2 (ENSXETG00000021321) #11	cenpe (ENSXETG00000021319)	ENSXETG00000046218	tacr3 (ENSXETG00000021317) #14	ENSXETG00000034707	ENSXETG00000048646	cxxc4 (ENSXETG00000045455) #15	ENSXETG00000042602	tet2 (ENSXETG00000014101) #17	ppa1 (ENSXETG00000014102) #18	arhgef38 (ENSXETG00000014106) #19	ints12 (ENSXETG00000014107) #20	gstcd (ENSXETG00000014108) #21	npnt (ENSXETG00000014111) #22	ENSXETG00000024523	tbck (ENSXETG00000027870) #23	aimp1 (ENSXETG00000019862) #24	gimd1 (ENSXETG00000039071) #25	ENSXETG00000039437	ENSXETG00000027875	ENSXETG00000042108	ENSXETG00000044811	dkk2 (ENSXETG00000019859)	papss1 (ENSXETG00000019855) #29	sgms2 (ENSXETG00000019854) #30	qrfpr (ENSXETG00000002104)	tnip3 (ENSXETG00000043582)	ndnf (ENSXETG00000002103)	prdm5 (ENSXETG00000002101)
Leishan spiny toad	MODERN SPECIES		ENSLLEG00000000767	ENSLLEG00000000759	CXXC4 (ENSLLEG00000000727) #15	ENSLLEG00000000711	ENSLLEG00000000698	TET2 (ENSLLEG00000000660) #17	PPA2 (ENSLLEG00000000584) #18	ENSLLEG00000000561	ARHGEF38 (ENSLLEG00000000536) #19	INTS12 (ENSLLEG00000000523) #20	ENSLLEG00000000508	GSTCD (ENSLLEG00000000490) #21	ENSLLEG00000000481	FMN2 (ENSLLEG00000000473)	ENSLLEG00000000467	NPNT (ENSLLEG00000000387) #22	ENSLLEG00000000361	TBCK (ENSLLEG00000000221) #23	AIMP1 (ENSLLEG00000000171) #24	GIMD1 (ENSLLEG00000000161) #25	ENSLLEG00000000153	ENSLLEG00000000145	PAPSS1 (ENSLLEG00000004464) #29	SGMS2 (ENSLLEG00000004446) #30	CYP2U1 (ENSLLEG00000004438) #31	ENSLLEG00000004435	ENSLLEG00000004422	LEF1 (ENSLLEG00000004381) #33	ENSLLEG00000004366	RPL34 (ENSLLEG00000004358) #36	OSTC (ENSLLEG00000004348) #37
Coelacanth	MODERN SPECIES	1588															ENSLACG00000004087 #21	NPNT (ENSLACG00000005397) #22	TBCK (ENSLACG00000007884) #23	AIMP1 (ENSLACG00000010765) #24	GIMD1 (ENSLACG00000011319) #25
Actinopterygii	ANCESTRAL SPECIES	85										ENSGT00940000154108.b.a.a #15	ENSGT00940000160003 #17	ENSGT00390000017004.a.a #18	ENSGT00950000183088.a.b.b #19	ENSGT00390000005218 #20	ENSGT00390000004446 #21	ENSGT00930000150973.B #22	ENSGT00940000158244 #23	ENSGT00940000154950 #24	ENSGT00530000069080 #25	ENSGT00940000164073	ENSGT00390000009613.b #29	ENSGT00940000157370 #30	ENSGT00940000157714 #31	ENSGT00940000159984 #32	ENSGT00940000159660 #33	ENSGT00940000157910	ENSGT00950000182920.b.a.b.a.a	ENSGT00390000008250	ENSGT00950000182924.B.a.a	ENSGT00940000158059	ENSGT00940000155140
Reedfish	MODERN SPECIES	15	ENSECRG00000011495	ENSECRG00000011506	H2AZ1 (ENSECRG00000011528)	DDIT4L (ENSECRG00000011559)	SLC39A8 (ENSECRG00000011574)	ENSECRG00000011595	PPP3CA (ENSECRG00000011638)	ENSECRG00000011663	rpl34 (ENSECRG00000011673) #36	CXXC4 (ENSECRG00000011685) #15	TET2 (ENSECRG00000011705) #17	ppa2 (ENSECRG00000011746) #18	ARHGEF38 (ENSECRG00000011809) #19	ints12 (ENSECRG00000011834) #20	gstcd (ENSECRG00000011846) #21	npnta (ENSECRG00000011872) #22	tbck (ENSECRG00000011906) #23	aimp1a (ENSECRG00000011949) #24	GIMD1 (ENSECRG00000011971) #25	dkk2 (ENSECRG00000011981)	papss1 (ENSECRG00000012025) #29	sgms2b (ENSECRG00000012112) #30	ENSECRG00000012157	TMEM215 (ENSECRG00000012230)	ndufb6 (ENSECRG00000012243)	NFKB1 (ENSECRG00000012266)	manba (ENSECRG00000012336)	ube2d2l (ENSECRG00000012386) #8	ENSECRG00000004192 #11	cisd2 (ENSECRG00000004211) #9	bdh2 (ENSECRG00000004220) #12
Neopterygii	ANCESTRAL SPECIES	116								ENSGT00950000182991.B	ENSGT00940000162423	ENSGT00940000154108.b.a.a #15	ENSGT00940000160003 #17	ENSGT00390000017004.a.a #18	ENSGT00950000183088.a.b.b #19	ENSGT00390000005218 #20	ENSGT00390000004446 #21	ENSGT00930000150973.B #22	ENSGT00940000158244 #23	ENSGT00940000154950 #24	ENSGT00530000069080 #25	ENSGT00940000164073	ENSGT00390000009613.b #29	ENSGT00940000157370 #30	ENSGT00940000157714 #31	ENSGT00940000159984 #32	ENSGT00940000159660 #33	ENSGT00940000158059	ENSGT00940000155140	ENSGT00390000008798.c	ENSGT00930000151042	ENSGT00940000157887	ENSGT00950000182917.a.a.a.a
Spotted gar	MODERN SPECIES	670	SYNPO2 (ENSLOCG00000012536)	myoz2b (ENSLOCG00000012549)	USP53 (ENSLOCG00000012556)	fabp2 (ENSLOCG00000012560)	DMRTA1 (ENSLOCG00000012567)	ENSLOCG00000012571	elavl2 (ENSLOCG00000012575)	CAAP1 (ENSLOCG00000012584)	CDKN2B (ENSLOCG00000012588)	CXXC4 (ENSLOCG00000012594) #15	TET2 (ENSLOCG00000012598) #17	ppa2 (ENSLOCG00000012607) #18	ARHGEF38 (ENSLOCG00000012616) #19	ints12 (ENSLOCG00000012622) #20	gstcd (ENSLOCG00000012628) #21	npnta (ENSLOCG00000012639) #22	tbck (ENSLOCG00000012644) #23	sgms2b (ENSLOCG00000012660) #30	papss1 (ENSLOCG00000012667) #29	dkk2 (ENSLOCG00000012675)	GIMD1 (ENSLOCG00000012679) #25	aimp1a (ENSLOCG00000012682) #24	ENSLOCG00000012690	spata6l (ENSLOCG00000012696)	slc1a1 (ENSLOCG00000012701)	slc1a1 (ENSLOCG00000012708)	RAP1GDS1 (ENSLOCG00000012715)	tspan5b (ENSLOCG00000012728)	trmt10b (ENSLOCG00000012735)	ENSLOCG00000012739	intu (ENSLOCG00000012742)
Osteoglossocephalai	DUPLICATION
Osteoglossocephalai	DUPLICATION
Osteoglossocephalai	ANCESTRAL SPECIES	385													ENSGT00940000163785.a.a.a	ENSGT00530000064170.d	ENSGT00940000153173.a	ENSGT00930000150973.B.e.a #22	ENSGT00940000154950.y.b #24	ENSGT00530000069080 #25	ENSGT00940000164073.b	ENSGT00940000157370.a #30
Osteoglossiformes	ANCESTRAL SPECIES	148	ENSGT00940000160795.a	ENSGT00950000182934.a.a	ENSGT00940000165232	ENSGT00940000157511	ENSGT00940000159443	ENSGT00530000063713.b.a.s	ENSGT00940000160184.c.b.f	ENSGT00390000017452	ENSGT00390000015948.a.c	ENSGT00950000183109.d	ENSGT00940000160120.e.a	ENSGT00940000163785.a.a.a	ENSGT00530000064170.d	ENSGT00940000153173.a	ENSGT00940000160003.h #17	ENSGT00930000150973.B.e.a #22	ENSGT00940000154950.y.b #24	ENSGT00530000069080 #25	ENSGT00940000164073.b.a	ENSGT00940000157370.a #30	ENSGT00940000157714 #31	ENSGT00940000159660.g #33	ENSGT00940000155140	ENSGT00930000151042	ENSGT00940000157887.p	ENSGT00950000182917.a.a.a.a	ENSGT01030000235336	ENSGT01060000248998	ENSGT00940000154737.d.e	ENSGT00950000182907.a.b.b.a.b	ENSGT00940000155598.d
Asian bonytongue	MODERN SPECIES	18	LRRTM1 (ENSSFOG00015033327)	ctnna2 (ENSSFOG00015017032)	ENSSFOG00015017102	rnf24 (ENSSFOG00015033113)	FBXO41 (ENSSFOG00015017167)	pdcd4a (ENSSFOG00015017220)	cyp17a2 (ENSSFOG00015017249)	ENSSFOG00015017269	MXD4 (ENSSFOG00015025169)	ENSSFOG00015017318	RIGI (ENSSFOG00015017386)	ENSSFOG00015025165	CXXC4 (ENSSFOG00015030741) #15	ENSSFOG00015016592 #17	ints12 (ENSSFOG00015016612) #20	NPNT (ENSSFOG00015016658) #22	AIMP1 (ENSSFOG00015014632) #24	GIMD1 (ENSSFOG00015014614) #25	ENSSFOG00015014602	sgms2b (ENSSFOG00015031933) #30	cyp2u1 (ENSSFOG00015014549) #31	LEF1 (ENSSFOG00015014526) #33	ENSSFOG00015014418	CASP6 (ENSSFOG00015029815)	ENSSFOG00015014238	dnajb14 (ENSSFOG00015014183)	TTC39B (ENSSFOG00015014125)	PSIP1 (ENSSFOG00015014102)	ENSSFOG00015014057	bnc2 (ENSSFOG00015014026)	ENSSFOG00015013986
P. kingsleyae	MODERN SPECIES	234															ENSPKIG00000012637 #17	NPNT (ENSPKIG00000012674) #22	aimp1b (ENSPKIG00000012696) #24	GIMD1 (ENSPKIG00000012707) #25	ENSPKIG00000012720	sgms2b (ENSPKIG00000012734) #30	cyp2u1 (ENSPKIG00000012757) #31	LEF1 (ENSPKIG00000012779) #33	znf330 (ENSPKIG00000012819)	RNF150 (ENSPKIG00000012850)	TBC1D9 (ENSPKIG00000012912)	ENSPKIG00000013137	ENSPKIG00000013148	ENSPKIG00000013165	PPM1K (ENSPKIG00000013197)	abcg2a (ENSPKIG00000013249)	G3BP2 (ENSPKIG00000013310)
Clupeocephala	ANCESTRAL SPECIES	201							ENSGT00530000063713.b.b	ENSGT00940000165075.b	ENSGT00940000155588.a	ENSGT00950000183109.d.e.a	ENSGT00950000182810.B.b.a.b	ENSGT00940000163785.a.a.a	ENSGT00530000064170.d	ENSGT00940000153173.a	ENSGT00940000154108.b.a.b ##15	ENSGT00930000150973.B.e.a #22	ENSGT00940000154950.y.b #24	ENSGT00940000164073.b	ENSGT00940000157370.a #30	ENSGT00940000158059.h	ENSGT00930000151042	ENSGT00950000182917.a.a.a.a	ENSGT00940000154706.rb.a	ENSGT01030000235123	ENSGT01030000235336	ENSGT01060000248998	ENSGT00940000177950	ENSGT00940000155951.b	ENSGT00940000155951.a	ENSGT00390000011365.b	ENSGT00940000160368
Otomorpha	ANCESTRAL SPECIES	149	ENSGT00390000008611	ENSGT01100000263512.a.a.b.a	ENSGT00940000155201.d	ENSGT00950000182936.a.a.b.b	ENSGT00940000155694.h	ENSGT00940000154895.a.a	ENSGT00530000063713.b.b	ENSGT00940000165075.b	ENSGT00940000155588.a	ENSGT00950000183109.d.e.b	ENSGT00950000182810.B.b.a.b	ENSGT00940000163785.a.a.a	ENSGT00530000064170.d	ENSGT00940000153173.a	ENSGT00940000154108.b.a.b ##15	ENSGT00930000150973.B.e.a #22	ENSGT00940000154950.y.b #24	ENSGT00940000164073.b	ENSGT00940000157370.a #30	ENSGT00940000158059.h	ENSGT00930000151042	ENSGT00950000182917.a.a.a.a	ENSGT00940000154706.rb.a	ENSGT01030000235123	ENSGT01030000235336	ENSGT01060000248998	ENSGT00940000155598.b.m.b	ENSGT00940000155951.b	ENSGT00940000155951.a	ENSGT00390000011365.b.w.b	ENSGT00940000160368
Otophysi	ANCESTRAL SPECIES	164	ENSGT01100000263512.a.a.b.a	ENSGT00940000155201.d	ENSGT00950000182936.a.a.b.b	ENSGT00940000155694.h	ENSGT00940000154895.a.a	ENSGT00530000063713.b.b	ENSGT00940000165075.b	ENSGT00940000155588.a	ENSGT00950000183109.d.e.b	ENSGT00990000204454	ENSGT00950000182810.B.b.a.b	ENSGT00940000163785.a.a.a	ENSGT00530000064170.d	ENSGT00940000153173.a	ENSGT00940000154108.b.a.b ##15	ENSGT00930000150973.B.e.a #22	ENSGT00940000154950.y.b #24	ENSGT00940000164073.b	ENSGT00940000157370.a #30	ENSGT00930000151042.w	ENSGT00950000182917.a.a.a.a	ENSGT00940000154706.rb.a	ENSGT00940000167699	ENSGT00390000005844.a.a	ENSGT00940000153942.b	ENSGT00940000155598.b.m.b	ENSGT00940000155951.b	ENSGT00940000155951.a	ENSGT00390000011365.b.w.b	ENSGT00940000160368	ENSGT00390000013285.h #11
Characiphysae	ANCESTRAL SPECIES	193										ENSGT00990000204454	ENSGT00950000182810.B.b.a.b	ENSGT00940000163785.a.a.a	ENSGT00530000064170.d	ENSGT00940000153173.a	ENSGT00940000154108.b.a.b ##15	ENSGT00930000150973.B.e.a #22	ENSGT00940000154950.y.b #24	ENSGT00940000164073.b	ENSGT00940000157370.a #30	ENSGT00930000151042.w	ENSGT00950000182917.a.a.a.a	ENSGT00940000154706.rb.a	ENSGT00390000005844.a.a	ENSGT00940000167699
Channel catfish	MODERN SPECIES	6	Mdp1 (ENSIPUG00000002764)	ENSIPUG00000002781	rnf146 (ENSIPUG00000002813)	ENSIPUG00000002818	ENSIPUG00000002826	ELOVL4 (ENSIPUG00000002837)	tent5ab (ENSIPUG00000002850)	tcp1 (ENSIPUG00000002853)	PRSS35 (ENSIPUG00000002875)	ENSIPUG00000002888	prelid1b (ENSIPUG00000002915)	ENSIPUG00000002950	ENSIPUG00000003098	ddx58 (ENSIPUG00000003114)	ENSIPUG00000003179 ##15	ENSIPUG00000003183 #22	AIMP1 (ENSIPUG00000003203) #24	ENSIPUG00000003218	sgms2b (ENSIPUG00000003241) #30	cfi (ENSIPUG00000003259)	ENSIPUG00000003339	ENSIPUG00000003363	ENSIPUG00000003374	MEPCE (ENSIPUG00000003387)	zgc:158659 (ENSIPUG00000003405)	ENSIPUG00000003441	tec (ENSIPUG00000003515)	ENSIPUG00000003538	g3bp2 (ENSIPUG00000003561)	ENSIPUG00000003594 #11	ENSIPUG00000003611
Characiphysae_b	ANCESTRAL SPECIES	207										ENSGT00990000204454.a	ENSGT00950000182810.B.b.a.b	ENSGT00940000163785.a.a.a	ENSGT00530000064170.d	ENSGT00940000153173.a	ENSGT00940000154108.b.a.b ##15	ENSGT00930000150973.B.e.a #22	ENSGT00940000154950.y.b #24	ENSGT00990000205111	ENSGT00940000157370.a #30	ENSGT00930000151042.w	ENSGT00950000182917.a.a.a.a	ENSGT00940000154706.rb.a	ENSGT00390000005844.a.a	ENSGT00940000167699
Characoidei	ANCESTRAL SPECIES	266										ENSGT00990000204454.a	ENSGT00950000182810.B.b.a.b	ENSGT00940000163785.a.a.a	ENSGT00530000064170.d	ENSGT00940000153173.a	ENSGT00940000154108.b.a.b ##15	ENSGT00930000150973.B.e.a #22	ENSGT00940000154950.y.b #24	ENSGT01100000263547.a.a.b.a.b.a.a.a	ENSGT00940000157370.a #30	ENSGT00930000151042.w	ENSGT00950000182917.a.a.a.a	ENSGT00940000154706.rb.a	ENSGT00390000005844.a.a	ENSGT00940000167699
Red-bellied piranha	MODERN SPECIES	904															ENSPNAG00000003580 ##15	ENSPNAG00000019181 #22	ENSPNAG00000019198	aimp1b (ENSPNAG00000003584) #24	ENSPNAG00000019247	ENSPNAG00000019265	ENSPNAG00000019280	sgms2b (ENSPNAG00000019300) #30	ENSPNAG00000019329	ENSPNAG00000019456
Mexicana tetra	MODERN SPECIES	698										ENSAMXG00000006799	prelid1b (ENSAMXG00000015346)	ENSAMXG00000015515	ENSAMXG00000036211	ENSAMXG00000015795	ENSAMXG00000042472 ##15	ENSAMXG00000016063 #22	aimp1b (ENSAMXG00000016160) #24	ENSAMXG00000016189	ENSAMXG00000034927	sgms2b (ENSAMXG00000037894) #30	CFI (ENSAMXG00000016365)	ENSAMXG00000016479	ENSAMXG00000037343	ENSAMXG00000040791	ENSAMXG00000016573	ENSAMXG00000029624
Electric eel	MODERN SPECIES	834											ENSEEEG00000019131 #11	ENSEEEG00000018869	ENSEEEG00000018856	ENSEEEG00000018854	ENSEEEG00000018847	ENSEEEG00000018844 #22	aimp1b (ENSEEEG00000018843) #24	ENSEEEG00000018842
Cyprinoidei	ANCESTRAL SPECIES	121	ENSGT01100000263512.a.a.b.a	ENSGT00940000155201.d	ENSGT00950000182936.a.a.b.b	ENSGT00940000155694.h	ENSGT00940000154895.a.a	ENSGT00530000063713.b.b	ENSGT00940000165075.b	ENSGT00940000155588.a	ENSGT00950000183109.d.e.b	ENSGT00990000204454	ENSGT00950000182810.B.b.a.b	ENSGT00940000163785.a.a.a	ENSGT00530000064170.d	ENSGT00940000153173.a	ENSGT00940000154108.b.a.b ##15	ENSGT00930000150973.B.e.a #22	ENSGT00940000154950.y.b #24	ENSGT00940000157370.a #30	ENSGT00930000151042.w	ENSGT00950000182917.a.a.a.a	ENSGT00940000154706.rb.a	ENSGT00940000167699	ENSGT01060000248726	ENSGT01100000263547.a.a.a.d.b
Cyprininae	ANCESTRAL SPECIES	433										ENSGT00950000183109.d.e.b.j	ENSGT00950000182810.B.b.a.b.h	ENSGT00940000163785.a.a.a	ENSGT00530000064170.d.e	ENSGT00940000153173.a.e	ENSGT00940000154108.b.a.b.i.a ##15	ENSGT00930000150973.B.e.a #22	ENSGT00940000154950.y.b #24	ENSGT00940000157370.a.a #30	ENSGT00930000151042.w.c	ENSGT00950000182917.a.a.a.a.i	ENSGT00940000154706.rb.a.b.a.a	ENSGT00940000153942.b.k	ENSGT00390000005844.a.a	ENSGT00940000154737.d.g.b	ENSGT00940000154466.bc.a	ENSGT00390000011553	ENSGT01030000234598.a.a.b	ENSGT01060000253730	ENSGT00940000155128.a.b.a.a	ENSGT00940000161400.o	ENSGT00940000167671.b
Cyprininae_a	ANCESTRAL SPECIES	235	ENSGT00390000007662.d.a.b	ENSGT00940000164952	ENSGT00940000155473.c.a.e	ENSGT00940000169945.a	ENSGT00940000177895.a	ENSGT00930000151815	ENSGT00940000154895.a.a.f	ENSGT00530000063713.b.b.d	ENSGT00940000165075.b.b	ENSGT00950000183109.d.e.b.j	ENSGT00950000182810.B.b.a.b.h	ENSGT00940000163785.a.a.a	ENSGT00530000064170.d.e	ENSGT00940000153173.a.e	ENSGT00940000154108.b.a.b.i.a ##15	ENSGT00930000150973.B.e.a #22	ENSGT00940000154950.y.b #24	ENSGT00940000157370.a.a #30	ENSGT00930000151042.w.c	ENSGT00950000182917.a.a.a.a.i	ENSGT00940000154706.rb.a.b.a.a	ENSGT00390000005844.a.a.gd	ENSGT00940000154737.d.h	ENSGT00940000154737.d.g.b	ENSGT00940000154466.bc.a	ENSGT00390000011553	ENSGT01030000234598.a.a.b	ENSGT01060000253730	ENSGT00940000155128.a.b.a.a	ENSGT00940000165297.l	ENSGT01030000234558.A.a.a.a
Common carp reference	MODERN SPECIES	11	fbxl5 (ENSCCRG00000032202)	syap1 (ENSCCRG00000039646)	lmnl3 (ENSCCRG00000039638)	ENSCCRG00000060405	ENSCCRG00000058211	ENSCCRG00000072607	ENSCCRG00000029897	ENSCCRG00000080711	egr4 (ENSCCRG00000054665)	ENSCCRG00000074710	ENSCCRG00000048551	ENSCCRG00000055026	ENSCCRG00000057075	ENSCCRG00000048558	ENSCCRG00000077092 ##15	ENSCCRG00000068672 #22	sgms2b (ENSCCRG00000065287) #30	ENSCCRG00000012458	ENSCCRG00000026837	ENSCCRG00000027082	ENSCCRG00000042099	ENSCCRG00000082613	ENSCCRG00000070714	ENSCCRG00000061779	ctc1 (ENSCCRG00000037425)	tfr2 (ENSCCRG00000034466)	ENSCCRG00000067082	ENSCCRG00000063167	ENSCCRG00000074434	ENSCCRG00000053142	plod3 (ENSCCRG00000082436)
Golden-line barbel	MODERN SPECIES	957					ero1b (ENSSGRG00000024090)	ENSSGRG00000024096	tbce (ENSSGRG00000024100)	rbm34 (ENSSGRG00000024109)	tomm20b (ENSSGRG00000024115)	irf2bp2b (ENSSGRG00000024127)	map1lc3c (ENSSGRG00000024128)	strn (ENSSGRG00000024154)	eif4a3 (ENSSGRG00000024684)	ENSSGRG00000026773	pfklb (ENSSGRG00000026791)	ENSSGRG00000026792 #22	sgms2b (ENSSGRG00000026793) #30	sgms2b (ENSSGRG00000026795) #30	ENSSGRG00000026797	ENSSGRG00000026802	ENSSGRG00000026805	ENSSGRG00000026809
Zebrafish	MODERN SPECIES	15	VDR (ENSDARG00000099483)	VDR (ENSDARG00000112923)	ENSDARG00000033955	ednrab (ENSDARG00000062262)	ENSDARG00000102585	ENSDARG00000102845	ENSDARG00000076310	egr4 (ENSDARG00000077799)	cyp17a2 (ENSDARG00000053966)	ENSDARG00000092260	ENSDARG00000101212	prelid1b (ENSDARG00000044169)	ENSDARG00000095843	ENSDARG00000095817	ccn1 (ENSDARG00000023062)	ENSDARG00000100797 #22	aimp1b (ENSDARG00000036894) #24	sgms2b (ENSDARG00000036897) #30	ENSDARG00000099425	ENSDARG00000100962	ENSDARG00000077405	ENSDARG00000027381	ENSDARG00000039900	sh3gl2b (ENSDARG00000039901)	hmgb2b (ENSDARG00000053990)	ctc1 (ENSDARG00000070119)	tfr2 (ENSDARG00000103727)	ENSDARG00000095861	ENSDARG00000095962	ENSDARG00000095963	plod3 (ENSDARG00000076317)
Clupeiformes	ANCESTRAL SPECIES	267																ENSGT00930000150973.B.e.a #22	ENSGT00940000154950.y.b #24	ENSGT00990000205111	ENSGT00940000157370.a #30	ENSGT00940000158059.h	ENSGT00930000151042	ENSGT00950000182917.a.a.a.a	ENSGT00940000155598.b.m.a	ENSGT00940000155951.b	ENSGT00940000155951.a	ENSGT00390000011365.b.w.b	ENSGT00940000160368	ENSGT00390000013285.h #11	ENSGT00940000157103	ENSGT00940000157059	ENSGT00940000156074.a.a
Atlantic herring	MODERN SPECIES	9	ENSCHAG00000001888	ENSCHAG00000001900	ENSCHAG00000002023	ENSCHAG00000002042	ENSCHAG00000002066	ENSCHAG00000002084	ENSCHAG00000002121	ednrab (ENSCHAG00000002158)	ENSCHAG00000003316	ednrab (ENSCHAG00000003519)	ENSCHAG00000003830	ENSCHAG00000003922	ENSCHAG00000004264	ENSCHAG00000004432	cyp17a2 (ENSCHAG00000004503)	ENSCHAG00000007242 #22	aimp1b (ENSCHAG00000007267) #24	ENSCHAG00000007420	sgms2b (ENSCHAG00000007453) #30	ENSCHAG00000007461	ENSCHAG00000007475	ENSCHAG00000007625	ENSCHAG00000007650	ENSCHAG00000008213	ENSCHAG00000008284	ENSCHAG00000008280	ENSCHAG00000008237	ENSCHAG00000008302	ENSCHAG00000008321	ENSCHAG00000008509	ENSCHAG00000008610
Euteleosteomorpha	ANCESTRAL SPECIES	217			ENSGT00530000063713.b.b	ENSGT00940000165075.b	ENSGT00940000155588.a	ENSGT00950000183109.d.e.a	ENSGT00940000156074.a.a	ENSGT00940000157059	ENSGT00940000157103	ENSGT00940000155512.q.b	ENSGT00390000013285.h #11	ENSGT00950000182810.B.b.a.b	ENSGT00940000163785.a.a.a	ENSGT00530000064170.d	ENSGT00940000154108.b.a.b ##15	ENSGT00930000150973.B.e.a #22	ENSGT00940000164073.b	ENSGT00940000175283	ENSGT00940000154950.y.b #24	ENSGT00940000157370.a #30	ENSGT00940000158059.h	ENSGT00930000151042	ENSGT00950000182917.a.a.a.a	ENSGT00940000154706.rb.a	ENSGT01030000235123	ENSGT01060000248726
Protacanthopterygii	ANCESTRAL SPECIES	139											ENSGT00950000182810.B.b.a.b	ENSGT00940000163785.a.a.a	ENSGT00530000064170.d	ENSGT00940000153173.a	ENSGT00940000154108.b.a.b ##15	ENSGT00930000150973.B.e.a #22	ENSGT00940000164073.b	ENSGT00940000175283	ENSGT00940000154950.y.b #24	ENSGT00940000157370.a #30	ENSGT00940000158059.h	ENSGT00940000155140.ib	ENSGT00930000151042	ENSGT00950000182917.a.a.a.a	ENSGT01010000224929	ENSGT00940000153942.a.e.b	ENSGT00940000180552	ENSGT00940000154895.a.a	ENSGT01100000263512.a.a.b.a	ENSGT00390000008611	ENSGT00390000011932
Salmoninae	ANCESTRAL SPECIES	716						ENSGT00390000013285.h.f.b #11	ENSGT00940000155512.q.b	ENSGT00940000157103.h	ENSGT00940000157059	ENSGT00940000156074.a.a	ENSGT00530000063713.b.b	ENSGT00940000155588.a	ENSGT00950000183109.d.e.a	ENSGT00530000064170.d	ENSGT00940000154108.b.a.b.h ##15	ENSGT00930000150973.B.e.a #22
Salmoninae_a	ANCESTRAL SPECIES	157	ENSGT00560000077278.a	ENSGT00940000164913	ENSGT00940000153299.b.d	ENSGT00390000011553	ENSGT01030000234598.a.a.b	ENSGT00390000013285.h.f.b #11	ENSGT00940000155512.q.b	ENSGT00940000157103.h	ENSGT00940000157059	ENSGT00940000156074.a.a	ENSGT00530000063713.b.b	ENSGT00940000155588.a	ENSGT00950000183109.d.e.a	ENSGT00530000064170.d	ENSGT00940000154108.b.a.b.h ##15	ENSGT00930000150973.B.e.a #22
Oncorhynchus	ANCESTRAL SPECIES	110	ENSGT00940000164913	ENSGT00940000153299.b.c	ENSGT00390000011553	ENSGT01030000234598.a.a.b	ENSGT00390000013285.h.f.a.b #11	ENSGT00940000155512.q.b	ENSGT00940000157103.h	ENSGT00940000157059	ENSGT00940000156074.a.a	ENSGT00390000013285.h.e.b #11	ENSGT00530000063713.b.b	ENSGT00940000155588.a	ENSGT00950000183109.d.e.a	ENSGT00530000064170.d	ENSGT00940000154108.b.a.b.h ##15	ENSGT00930000150973.B.e.a #22	ENSGT00940000154986.a.e.a	ENSGT00950000182936.a.a.b.b
Oncorhynchus_a	ANCESTRAL SPECIES	216								ENSGT00940000157059	ENSGT00940000156074.a.a	ENSGT00390000013285.h.e.b #11	ENSGT00530000063713.b.b	ENSGT00940000155588.a	ENSGT00950000183109.d.e.a	ENSGT00530000064170.d	ENSGT00940000154108.b.a.b.h ##15	ENSGT00930000150973.B.e.a #22	ENSGT00940000154986.a.e.a	ENSGT00950000182936.a.a.b.b
Coho salmon	MODERN SPECIES	29	ENSOKIG00005037627	ENSOKIG00005036682	CORIN (ENSOKIG00005035984)	ENSOKIG00005035950	ENSOKIG00005035941	ENSOKIG00005035929 #11	NFXL1 (ENSOKIG00005035546)	CNGA1 (ENSOKIG00005034930)	ENSOKIG00005034856 #11	ENSOKIG00005034832	cyp17a2 (ENSOKIG00005034347)	ENSOKIG00005034316	ENSOKIG00005034309	ENSOKIG00005034296	ENSOKIG00005034290 ##15	ENSOKIG00005034272 #22	ENSOKIG00005034267	ENSOKIG00005034265	ENSOKIG00005034063	FHIP1A (ENSOKIG00005033720)	ENSOKIG00005033637	fga (ENSOKIG00005033627)	ENSOKIG00005033614	rnf175 (ENSOKIG00005033556)	ENSOKIG00005033444	ENSOKIG00005033393	ENSOKIG00005033376	ENSOKIG00005033369	ENSOKIG00005033352	TEC (ENSOKIG00005033007)	ENSOKIG00005032968
Rainbow trout	MODERN SPECIES	13	ENSOMYG00000049310	tfr2 (ENSOMYG00000051202)	ENSOMYG00000050343	ENSOMYG00000053678 #11	ENSOMYG00000017233	ENSOMYG00000063792	CORIN (ENSOMYG00000057541)	ENSOMYG00000054021	CNGA1 (ENSOMYG00000070724)	ENSOMYG00000045063 #11	ENSOMYG00000045055	ENSOMYG00000052410	ENSOMYG00000063122	ENSOMYG00000073791	ENSOMYG00000062691 ##15	ENSOMYG00000063897 #22	ENSOMYG00000054073	ENSOMYG00000049634
Salmo	ANCESTRAL SPECIES	291											ENSGT00530000063713.b.b	ENSGT00940000155588.a	ENSGT00950000183109.d.e.a	ENSGT00530000064170.d	ENSGT00940000154108.b.a.b.h ##15	ENSGT00930000150973.B.e.a #22
River trout	MODERN SPECIES	38	ENSSTUG00000003414	ENSSTUG00000003431	ENSSTUG00000003449	ENSSTUG00000003465	ENSSTUG00000003472	MEPCE (ENSSTUG00000003516)	ENSSTUG00000003524	ENSSTUG00000003534	ENSSTUG00000003560 #11	ENSSTUG00000003596	cyp17a2 (ENSSTUG00000003666)	ENSSTUG00000003678	ENSSTUG00000003690	ENSSTUG00000003708	ENSSTUG00000003716 ##15	ENSSTUG00000003727 #22	ENSSTUG00000003735	ENSSTUG00000003745	ENSSTUG00000003771	TMEM184C (ENSSTUG00000003809)	rnf150b (ENSSTUG00000003956)	ENSSTUG00000004004	tec (ENSSTUG00000004463)	ENSSTUG00000004678	ENSSTUG00000004686	ENSSTUG00000004703	rnf175 (ENSSTUG00000004967)	ENSSTUG00000005001	ENSSTUG00000005052	ENSSTUG00000005055	LRAT (ENSSTUG00000005064)
Atlantic salmon	MODERN SPECIES	26	ENSSSAG00000085201	ENSSSAG00000042383	ENSSSAG00000003560	ENSSSAG00000003443	ENSSSAG00000003568	ENSSSAG00000097950	ENSSSAG00000003402	ENSSSAG00000117040	ENSSSAG00000109658	ENSSSAG00000086490	ENSSSAG00000009941	ENSSSAG00000003391	ENSSSAG00000096566	ENSSSAG00000097744	ENSSSAG00000003217 ##15	ENSSSAG00000091035 #22	ENSSSAG00000085385	ENSSSAG00000087945	ENSSSAG00000002776	ENSSSAG00000120626	ENSSSAG00000108058	ENSSSAG00000112124	ENSSSAG00000086271	ENSSSAG00000087722	ENSSSAG00000116144	ENSSSAG00000093503	ENSSSAG00000076218	ENSSSAG00000113632	ENSSSAG00000099797	ENSSSAG00000081792	hmgb2b (ENSSSAG00000090592)
Northern pike	MODERN SPECIES	23	ENSELUG00000034508	ENSELUG00000031765	ENSELUG00000027388	zgc:194221 (ENSELUG00000025869)	ENSELUG00000005714	ENSELUG00000033225	cyp17a2 (ENSELUG00000005627)	ENSELUG00000032807	ENSELUG00000005609	ENSELUG00000001593	prelid1b (ENSELUG00000000151)	ENSELUG00000005568	ENSELUG00000005549	ENSELUG00000005444	ENSELUG00000005089 ##15	ENSELUG00000005081 #22	ENSELUG00000005058	ENSELUG00000005000	aimp1b (ENSELUG00000033372) #24	sgms2b (ENSELUG00000004990) #30	ENSELUG00000004967	ENSELUG00000025288	ENSELUG00000032030	ENSELUG00000006161	ENSELUG00000034040	TTC39B (ENSELUG00000006257)	ENSELUG00000028652	ENSELUG00000006279	ENSELUG00000031010	ENSELUG00000006334	ENSELUG00000006365
Acanthomorphata	ANCESTRAL SPECIES	188	ENSGT01060000248726	ENSGT01030000235123	ENSGT00940000153727.a	ENSGT00940000174394	ENSGT00940000154706.rb.a	ENSGT00950000182917.a.a.a.a	ENSGT00930000151042	ENSGT00940000158059.h	ENSGT00940000164073.b	ENSGT00940000175283	ENSGT00940000154950.y.b #24	ENSGT00940000157370.a #30	ENSGT00940000154108.b.a.b ##15	ENSGT00530000064170.d	ENSGT00940000163785.a.a.a	ENSGT00930000150973.B.e.a #22	ENSGT00390000013285.h #11	ENSGT00940000157103	ENSGT00940000157059	ENSGT00940000156074.a.a	ENSGT00950000183109.d.e.a	ENSGT00940000155588.a	ENSGT00940000165075.b	ENSGT00530000063713.b.b
Euacanthomorphacea	ANCESTRAL SPECIES	202													ENSGT00940000154108.b.a.b ##15	ENSGT00530000064170.d	ENSGT00940000163785.a.a.a	ENSGT00930000150973.B.e.a #22
Percomorphaceae	ANCESTRAL SPECIES	175													ENSGT00940000154108.b.a.b ##15	ENSGT00530000064170.d	ENSGT00940000163785.a.a.a	ENSGT00930000150973.B.e.a #22
Percomorphaceae_B	ANCESTRAL SPECIES	19	ENSGT00940000175283	ENSGT00940000154950.y.b #24	ENSGT00940000157370.a #30	ENSGT00940000168653.a	ENSGT00940000164868.C.c.a	ENSGT00940000165048.a	ENSGT00530000063713.b.b	ENSGT00940000160184.c.a	ENSGT00940000155588.a	ENSGT00950000183109.d.e.a	ENSGT00390000017614.e.b	ENSGT00950000182810.B.b.a.b	ENSGT00940000154108.b.a.b ##15	ENSGT00530000064170.d	ENSGT00940000163785.a.a.a	ENSGT00930000150973.B.e.a #22	ENSGT01100000263536.B.d	ENSGT00940000159295	ENSGT00940000165601	ENSGT00940000153582.a.m.a.a.a.b	ENSGT00940000156074.a.a	ENSGT00940000157059.x	ENSGT00940000157103	ENSGT00390000013285.h #11	ENSGT00940000175251	ENSGT00390000005544	ENSGT00940000165297.b	ENSGT00940000164853.a.b	ENSGT00940000167331.b	ENSGT00940000164913	ENSGT00940000175263
Ovalentaria	ANCESTRAL SPECIES	20	ENSGT00940000175283	ENSGT00940000154950.y.b #24	ENSGT00940000157370.a #30	ENSGT00940000168653.a	ENSGT00940000164868.C.c.a	ENSGT00940000165048.a	ENSGT00530000063713.b.b	ENSGT00940000160184.c.a	ENSGT00940000155588.a	ENSGT00950000183109.d.e.a	ENSGT00390000017614.e.b	ENSGT00950000182810.B.b.a.b	ENSGT00940000154108.b.a.b ##15	ENSGT00530000064170.d	ENSGT00940000163785.a.a.a	ENSGT00930000150973.B.e.a #22	ENSGT01100000263536.B.d	ENSGT00940000159295	ENSGT01010000230006	ENSGT00940000153582.a.m.a.a.a.b	ENSGT00940000156074.a.a	ENSGT00940000157059.x	ENSGT00940000157103	ENSGT00390000013285.h #11	ENSGT00940000175251	ENSGT00940000163711.b.e.a.b	ENSGT00390000005544	ENSGT00390000005094.h	ENSGT00940000165297.a.b	ENSGT00940000165297.a.a	ENSGT00440000037582
Atherinomorphae	ANCESTRAL SPECIES	36	ENSGT00940000175283	ENSGT00940000154950.y.b #24	ENSGT00940000157370.a #30	ENSGT00940000167339.l.b	ENSGT00940000164868.C.c.a	ENSGT00940000165048.a	ENSGT00530000063713.b.b	ENSGT00940000160184.c.a	ENSGT00940000155588.a	ENSGT00950000183109.d.e.a	ENSGT00390000017614.e.b	ENSGT00950000182810.B.b.a.b	ENSGT00940000154108.b.a.b ##15	ENSGT00530000064170.d	ENSGT00940000163785.a.a.a	ENSGT00930000150973.B.e.a #22	ENSGT01100000263536.B.d	ENSGT00940000159295	ENSGT00940000156038.a.b.b.i.a.b.a.b	ENSGT00940000156074.a.a	ENSGT00940000157059.x	ENSGT00940000157103	ENSGT00390000013285.h #11	ENSGT00940000175251	ENSGT00940000163711.b.e.a.b	ENSGT00390000005544	ENSGT00390000005094.h	ENSGT00940000165297.b	ENSGT00940000165297.a.a	ENSGT00440000037582	ENSGT01030000234558.A.a.a.a
Cyprinodontiformes	ANCESTRAL SPECIES	51	ENSGT00940000175283	ENSGT00940000154950.y.b #24	ENSGT00940000157370.a #30	ENSGT00940000167339.l.b	ENSGT00940000164868.C.c.a.a.a.a	ENSGT00940000165048.a	ENSGT00530000063713.b.b	ENSGT00940000160184.c.a	ENSGT00940000155588.a	ENSGT00950000183109.d.e.a	ENSGT00390000017614.e.b	ENSGT00950000182810.B.b.a.b	ENSGT00940000154108.b.a.b ##15	ENSGT00530000064170.d	ENSGT00940000163785.a.a.a	ENSGT00930000150973.B.e.a #22	ENSGT01100000263536.B.d	ENSGT00940000159295	ENSGT00940000156038.a.b.b.i.a.b.a.b	ENSGT00940000156074.a.a	ENSGT00940000157059.x	ENSGT00940000157103	ENSGT00390000013285.h #11	ENSGT00940000175251
Cyprinodontoidei	ANCESTRAL SPECIES	64	ENSGT00940000164073.b	ENSGT00940000175283	ENSGT00940000154950.y.b #24	ENSGT00940000157370.a #30	ENSGT00940000167339.l.b	ENSGT00940000165048.a	ENSGT00530000063713.b.b	ENSGT00940000160184.c.a	ENSGT00940000155588.a	ENSGT00950000183109.d.e.a	ENSGT00390000017614.e.b	ENSGT00950000182810.B.b.a.b	ENSGT00940000154108.b.a.b ##15	ENSGT00530000064170.d	ENSGT00940000163785.a.a.a	ENSGT00930000150973.B.e.a #22	ENSGT01100000263536.B.d	ENSGT00940000159295	ENSGT00940000156038.a.b.b.i.a.b.a.b	ENSGT00940000156074.a.a	ENSGT00940000157059.x	ENSGT00940000157103	ENSGT00390000013285.h #11	ENSGT00940000175251
Poeciliinae	ANCESTRAL SPECIES	32	ENSGT00940000154950.y.b #24	ENSGT00940000157370.a #30	ENSGT00940000168653.a	ENSGT00950000183052.b.c.b.b.a.a.b.b	ENSGT00940000167339.l.a	ENSGT00940000165048.a	ENSGT00530000063713.b.b	ENSGT00940000160184.c.a	ENSGT00940000155588.a	ENSGT00950000183109.d.e.a	ENSGT00390000017614.e.b	ENSGT00950000182810.B.b.a.b	ENSGT00940000154108.b.a.b ##15	ENSGT00530000064170.d	ENSGT00940000163785.a.a.a	ENSGT00930000150973.B.e.a #22
Poecilia	ANCESTRAL SPECIES	61	ENSGT00940000157370.a #30	ENSGT00940000168653.a	ENSGT00950000183052.b.c.b.b.a.a.b.b	ENSGT00940000167339.l.a	ENSGT00940000165048.a	ENSGT00530000063713.b.b	ENSGT00940000160184.c.a	ENSGT00940000155588.a	ENSGT00950000183109.d.e.a	ENSGT00390000017614.e.b	ENSGT00950000182810.B.b.a.b	ENSGT00940000154108.b.a.b ##15	ENSGT00530000064170.d	ENSGT00940000172190.A.a	ENSGT00940000163785.a.a.a	ENSGT00930000150973.B.e.a #22
NAME_6	ANCESTRAL SPECIES	110	ENSGT00940000154950.y.b #24	ENSGT00940000157370.a #30	ENSGT00940000167339.l.b	ENSGT00940000164868.C.c.a.a.a.b	ENSGT00940000165048.a	ENSGT00530000063713.b.b	ENSGT00940000160184.c.a	ENSGT00940000155588.a	ENSGT00950000183109.d.e.a	ENSGT00390000017614.e.b	ENSGT00950000182810.B.b.a.b	ENSGT00940000154108.b.a.b ##15	ENSGT00530000064170.d	ENSGT00940000172190.A.a	ENSGT00940000163785.a.a.a	ENSGT00930000150973.B.e.a #22
Amazon molly	MODERN SPECIES	467	aimp1b (ENSPFOG00000002610) #24	sgms2b (ENSPFOG00000002727) #30	ENSPFOG00000002853	ENSPFOG00000002887	ENSPFOG00000002898	ENSPFOG00000002943	ENSPFOG00000003059	cyp17a2 (ENSPFOG00000003090)	ENSPFOG00000003444	ENSPFOG00000003499	prelid1b (ENSPFOG00000003593)	ENSPFOG00000003666 ##15	ENSPFOG00000003676	ENSPFOG00000003678	ENSPFOG00000003691	ENSPFOG00000003998 #22	ENSPFOG00000022204
Guppy	MODERN SPECIES	448	ENSPREG00000014849	sgms2b (ENSPREG00000014859) #30	ENSPREG00000014869	ENSPREG00000014887	ENSPREG00000014898	ENSPREG00000014908	ENSPREG00000014918	cyp17a2 (ENSPREG00000014920)	ENSPREG00000014943	ENSPREG00000014986	prelid1b (ENSPREG00000015302)	ENSPREG00000015316	ENSPREG00000015341 ##15	ENSPREG00000015345	ENSPREG00000015357	ENSPREG00000015373 #22	ENSPREG00000015387
Platyfish	MODERN SPECIES	5	sgms2b (ENSXMAG00000025617) #30	ENSXMAG00000022013	ENSXMAG00000023531	ENSXMAG00000027649	ENSXMAG00000029138	ENSXMAG00000022641	ENSXMAG00000000612	ENSXMAG00000000621	cyp17a2 (ENSXMAG00000000622)	ENSXMAG00000029010	prelid1b (ENSXMAG00000000644)	ENSXMAG00000026417	ENSXMAG00000023713 ##15	ENSXMAG00000026798	ENSXMAG00000000646	ENSXMAG00000000649 #22	ENSXMAG00000025572	ENSXMAG00000025412	ENSXMAG00000028602	ENSXMAG00000021628	ENSXMAG00000026698	ENSXMAG00000026220	ENSXMAG00000024203	ENSXMAG00000026125	ENSXMAG00000023228	ENSXMAG00000029226	ENSXMAG00000029536	ENSXMAG00000022247	ENSXMAG00000023070	ENSXMAG00000030082	ENSXMAG00000028820
NAME_4	ANCESTRAL SPECIES	334								ENSGT00940000165048.a	ENSGT00530000063713.b.b	ENSGT00940000165075.b	ENSGT00940000155588.a	ENSGT00950000183109.d.e.a	ENSGT00940000154108.b.a.b ##15	ENSGT00530000064170.d	ENSGT00940000163785.a.a.a	ENSGT00930000150973.B.e.a #22
Mummichog	MODERN SPECIES	1124														ENSFHEG00000000830 ##15	ENSFHEG00000022469	ENSFHEG00000022481 #22
Sheepshead minnow	MODERN SPECIES	944							ENSCVAG00000007638	ENSCVAG00000007626	ENSCVAG00000007576	egr4 (ENSCVAG00000007564)	cyp17a2 (ENSCVAG00000007559)	ENSCVAG00000007538	ENSCVAG00000007531 ##15	ENSCVAG00000007525	ENSCVAG00000007515	ENSCVAG00000007459 #22
Oryzias	ANCESTRAL SPECIES	21	ENSGT00940000164073.b	ENSGT00940000175283	ENSGT00940000154950.y.b #24	ENSGT00940000157370.a #30	ENSGT00940000167339.l.b	ENSGT00940000165048.a	ENSGT00530000063713.b.b	ENSGT00940000160184.c.a	ENSGT00940000155588.a	ENSGT00950000183109.d.e.a	ENSGT00390000017614.e.b	ENSGT00950000182810.B.b.a.b	ENSGT00940000154108.b.a.b ##15	ENSGT00530000064170.d	ENSGT00940000163785.a.a.a	ENSGT00930000150973.B.e.a #22	ENSGT00940000179134	ENSGT00940000175251	ENSGT00940000163711.b.e.a.b	ENSGT01100000263536.B.d	ENSGT00940000159295	ENSGT00940000156038.a.b.b.i.a.b.a.b	ENSGT00940000156074.a.a	ENSGT00940000157059.x	ENSGT00940000157103	ENSGT00390000013285.h #11	ENSGT00390000005544	ENSGT00390000005094.h	ENSGT00940000165297.b	ENSGT00940000165297.a.a	ENSGT00440000037582
Oryzias_a	ANCESTRAL SPECIES	40	ENSGT00940000161319	ENSGT00940000175283	ENSGT00940000154950.y.b #24	ENSGT00940000157370.a #30	ENSGT00940000158431.a.a.b.e.a	ENSGT00940000165048.a	ENSGT00530000063713.b.b.a	ENSGT00940000169836	ENSGT00940000155588.a	ENSGT00950000183109.d.e.a	ENSGT00390000017614.e.b	ENSGT00950000182810.B.b.a.b	ENSGT00940000154108.b.a.b ##15	ENSGT00530000064170.d	ENSGT00940000163785.a.a.a	ENSGT00930000150973.B.e.a #22	ENSGT00940000179134	ENSGT01100000263536.B.d	ENSGT00940000159295	ENSGT00940000156038.a.b.b.i.a.b.a.b	ENSGT00940000156074.a.a	ENSGT00940000157059.x	ENSGT00940000157103	ENSGT00390000013285.h #11	ENSGT00390000005544	ENSGT00940000165297.b	ENSGT00940000165297.a.a	ENSGT00440000037582	ENSGT01030000234558.A.a.a.a	ENSGT00390000018426
Chinese medaka	MODERN SPECIES	1275										ENSOSIG00000008119	cyp17a2 (ENSOSIG00000008121)	ENSOSIG00000008125	prelid1b (ENSOSIG00000008126)	ENSOSIG00000008127 ##15	ENSOSIG00000008128	ENSOSIG00000008129 #22
Japanese Medaka HdrR	MODERN SPECIES	9	ENSORLG00000002289 #30	ENSORLG00000002284	ENSORLG00000022856	ENSORLG00000027998	ENSORLG00000002268	ENSORLG00000030379	ENSORLG00000002253	ENSORLG00000026185	cyp17a2 (ENSORLG00000002242)	ENSORLG00000026378	ENSORLG00000002210	prelid1b (ENSORLG00000002200)	ENSORLG00000028619 ##15	ENSORLG00000022113	olgc8 (ENSORLG00000002179)	ENSORLG00000002136 #22	ENSORLG00000024260	ENSORLG00000022417	ENSORLG00000029349	ENSORLG00000027820	ENSORLG00000028333	ENSORLG00000029080	ENSORLG00000019032	CNGA1 (ENSORLG00000019025)	ENSORLG00000021945	CORIN (ENSORLG00000019007)	ENSORLG00000003439 #11	ift46 (ENSORLG00000028671)	ENSORLG00000018948	ENSORLG00000018936	cyb5d1 (ENSORLG00000021794)
Oryzias_b	ANCESTRAL SPECIES	96	ENSGT00940000164073.b	ENSGT00940000175283	ENSGT00940000154950.y.b #24	ENSGT00940000157370.a #30	ENSGT00940000167339.l.b	ENSGT00940000165048.a	ENSGT00530000063713.b.b	ENSGT00940000160184.c.a	ENSGT00940000155588.a	ENSGT00950000183109.d.e.a	ENSGT00390000017614.e.b	ENSGT00950000182810.B.b.a.b	ENSGT00940000154108.b.a.b ##15	ENSGT00530000064170.d	ENSGT00940000163785.a.a.a	ENSGT00930000150973.B.e.a #22	ENSGT00940000179134
Indian medaka	MODERN SPECIES	19	ENSOMEG00000021397	ENSOMEG00000021381	ENSOMEG00000021365	ENSOMEG00000021350	ENSOMEG00000021340	ENSOMEG00000021324	ENSOMEG00000021306	cyp17a2 (ENSOMEG00000021295)	ENSOMEG00000021275	ENSOMEG00000021248	prelid1b (ENSOMEG00000021223)	ENSOMEG00000021198 ##15	ENSOMEG00000021182	ENSOMEG00000000806	ENSOMEG00000021152	ENSOMEG00000021052 #22	ENSOMEG00000021004	ENSOMEG00000020983
Ovalentaria_B	ANCESTRAL SPECIES	55	ENSGT00940000175283	ENSGT00940000154950.y.b #24	ENSGT00940000157370.a #30	ENSGT00940000167339	ENSGT00940000177560	ENSGT00940000165048.a	ENSGT00530000063713.b.b	ENSGT00940000160184.c.a	ENSGT00940000155588.a	ENSGT00950000183109.d.e.a	ENSGT00940000156038.a.b.b.i.a.b.a.b	ENSGT00950000182810.B.b.a.b	ENSGT00940000154108.b.a.b ##15	ENSGT00530000064170.d	ENSGT00940000163785.a.a.a	ENSGT00930000150973.B.e.a #22
Pomacentridae	ANCESTRAL SPECIES	137	ENSGT00940000161319	ENSGT00940000175283	ENSGT00940000157370.a #30	ENSGT00940000153582.a.n	ENSGT00940000177560	ENSGT00940000165048.a	ENSGT00530000063713.b.b	ENSGT00940000160184.c.a	ENSGT00940000155588.a	ENSGT00950000183109.d.e.a	ENSGT00940000156038.a.b.b.i.a.b.a.b	ENSGT00950000182810.B.b.a.b	ENSGT00940000154108.b.a.b ##15	ENSGT00530000064170.d	ENSGT00940000163785.a.a.a	ENSGT00930000150973.B.e.a #22
Pomacentridae_A	ANCESTRAL SPECIES	142	ENSGT00940000154950.y.b #24	ENSGT00940000161319	ENSGT00940000175283	ENSGT00940000157370.a #30	ENSGT00940000153582.a.n	ENSGT00940000165048.a	ENSGT00530000063713.b.b	ENSGT00940000160184.c.a	ENSGT00940000155588.a	ENSGT00950000183109.d.e.a	ENSGT00940000156038.a.b.b.i.a.b.a.b	ENSGT00950000182810.B.b.a.b	ENSGT00940000154108.b.a.b ##15	ENSGT00530000064170.d	ENSGT00940000163785.a.a.a	ENSGT00930000150973.B.e.a #22
Amphiprion	ANCESTRAL SPECIES	163	ENSGT00940000157370.a #30	ENSGT00940000164868.C.d	ENSGT00940000153582.a.n	ENSGT00940000165048.a	ENSGT00530000063713.b.b	ENSGT00940000165075.b	ENSGT00940000160184.c.a	ENSGT00940000155588.a	ENSGT00950000183109.d.e.a	ENSGT00940000156038.a.b.b.i.a.b.a.b	ENSGT00950000182810.B.b.a.b	ENSGT00940000154108.b.a.b ##15	ENSGT00530000064170.d	ENSGT00980000202771	ENSGT00940000163785.a.a.a	ENSGT00930000150973.B.e.a #22
Orange clownfish	MODERN SPECIES	15	ENSAPEG00000018595 #30	ENSAPEG00000018660	ENSAPEG00000018689	ENSAPEG00000018703	ENSAPEG00000018715	ENSAPEG00000018747	ENSAPEG00000018846	cyp17a2 (ENSAPEG00000018860)	ENSAPEG00000018896	ENSAPEG00000018967	prelid1b (ENSAPEG00000019575)	ENSAPEG00000019598 ##15	ENSAPEG00000019613	ENSAPEG00000019632	ENSAPEG00000019652	ENSAPEG00000019707 #22	ENSAPEG00000019731	ENSAPEG00000019738	ENSAPEG00000019756	ENSAPEG00000019768	KIF1C (ENSAPEG00000019794)	ENSAPEG00000019926	ENSAPEG00000019938	ENSAPEG00000019948	ENSAPEG00000019969	ENSAPEG00000019982	ENSAPEG00000020016	znhit1 (ENSAPEG00000020072)	plod3 (ENSAPEG00000020103)	cyb5d1 (ENSAPEG00000020190)	ENSAPEG00000020211
Clown anemonefish	MODERN SPECIES	1224																ENSAOCG00000008829 #22
Spiny chromis	MODERN SPECIES	60	ENSAPOG00000016196	sgms2b (ENSAPOG00000016147) #30	ENSAPOG00000016137	ENSAPOG00000016132	ENSAPOG00000016125	ENSAPOG00000016099	ENSAPOG00000016085	ENSAPOG00000016073	cyp17a2 (ENSAPOG00000016068)	ENSAPOG00000016013	prelid1b (ENSAPOG00000016006)	ENSAPOG00000015973 ##15	ENSAPOG00000000984	ENSAPOG00000015919	ENSAPOG00000015886	ENSAPOG00000015748 #22
Cichlidae	ANCESTRAL SPECIES	47	ENSGT00940000175283	ENSGT00940000154950.y.b #24	ENSGT00940000157370.a #30	ENSGT00940000167339	ENSGT00940000177560	ENSGT00940000165048.a	ENSGT00530000063713.b.b	ENSGT00940000160184.c.a	ENSGT00940000155588.a	ENSGT00950000183109.d.e.a	ENSGT00940000156038.a.b.b.i.a.b.a.b.c.b	ENSGT00950000182810.B.b.a.b	ENSGT00940000154108.b.a.b ##15	ENSGT00530000064170.d	ENSGT00940000163785.a.a.a	ENSGT00930000150973.B.e.a #22	ENSGT00940000176993.a.a.b	ENSGT00940000163711.b.e.a.b.bb.b.b
Pseudocrenilabrinae	ANCESTRAL SPECIES	50	ENSGT00940000154950.y.b #24	ENSGT00940000157370.a #30	ENSGT00940000167339	ENSGT00940000177560	ENSGT00940000165048.a	ENSGT00530000063713.b.b	ENSGT00940000160184.c.a	ENSGT00940000155588.a	ENSGT00950000183109.d.e.a	ENSGT00940000156038.a.b.b.i.a.b.a.b.c.b.b.b	ENSGT00940000156038.a.b.b.i.a.b.a.b.c.b.a	ENSGT00950000182810.B.b.a.b	ENSGT00940000154108.b.a.b ##15	ENSGT00530000064170.d	ENSGT00940000163785.a.a.a	ENSGT00930000150973.B.e.a #22
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	54	ENSGT00940000175283	ENSGT00940000154950.y.b #24	ENSGT00940000157370.a #30	ENSGT00940000167339	ENSGT00940000177560	ENSGT00940000165048.a	ENSGT00530000063713.b.b	ENSGT00940000160184.c.a	ENSGT00940000155588.a	ENSGT00950000183109.d.e.a	ENSGT00940000156038.a.b.b.i.a.b.a.b.c.b.b.a	ENSGT00950000182810.B.b.a.b.b	ENSGT00940000154108.b.a.b ##15	ENSGT00530000064170.d	ENSGT00940000163785.a.a.a	ENSGT00930000150973.B.e.a #22
Haplochromini	ANCESTRAL SPECIES	64	ENSGT00940000157370.a #30	ENSGT00940000167339.n.b	ENSGT00940000177560	ENSGT00940000165048.a	ENSGT00530000063713.b.b	ENSGT00940000160184.c.a	ENSGT00940000155588.a	ENSGT00950000183109.d.e.a	ENSGT00940000156038.a.b.b.i.a.b.a.b.c.b.b.a	ENSGT00940000156038.a.b.b.i.a.b.a.b.c.b.b.b	ENSGT00940000156038.a.b.b.i.a.b.a.b.c.b.a	ENSGT00950000182810.B.b.a.b.a	ENSGT00940000154108.b.a.b ##15	ENSGT00530000064170.d	ENSGT00940000163785.a.a.a	ENSGT00930000150973.B.e.a #22
Burton s mouthbrooder	MODERN SPECIES	972														ENSHBUG00000019188 ##15	ENSHBUG00000019173	ENSHBUG00000019063 #22	ENSHBUG00000019053	ENSHBUG00000019042
Haplochromini_A	ANCESTRAL SPECIES	68	ENSGT00940000157370.a #30	ENSGT00940000167339.n.b	ENSGT00940000177560	ENSGT00940000165048.a	ENSGT00530000063713.b.b	ENSGT00940000160184.c.a	ENSGT00940000155588.a	ENSGT00950000183109.d.e.a	ENSGT00940000156038.a.b.b.i.a.b.a.b.c.b.b.a	ENSGT00940000156038.a.b.b.i.a.b.a.b.c.b.b.b	ENSGT00940000156038.a.b.b.i.a.b.a.b.c.b.a	ENSGT00950000182810.B.b.a.b.a	ENSGT00940000154108.b.a.b ##15	ENSGT00530000064170.d	ENSGT00940000163785.a.a.a	ENSGT00930000150973.B.e.a #22
Haplochromini_B	ANCESTRAL SPECIES	72	ENSGT00940000167339.n.b	ENSGT00940000177560	ENSGT00940000165048.a	ENSGT00530000063713.b.b	ENSGT00940000160184.c.a	ENSGT00940000155588.a	ENSGT00950000183109.d.e.a	ENSGT00940000156038.a.b.b.i.a.b.a.b.c.b.b.a	ENSGT00940000156038.b.e.b.a.a	ENSGT00940000156038.a.b.b.i.a.b.a.b.c.b.b.b	ENSGT00940000156038.a.b.b.i.a.b.a.b.c.b.a	ENSGT00950000182810.B.b.a.b.a	ENSGT00940000154108.b.a.b ##15	ENSGT00530000064170.d	ENSGT00940000163785.a.a.a	ENSGT00930000150973.B.e.a #22	ENSGT00940000156038.a.b.b.i.a.b.a.a.a
Zebra mbuna	MODERN SPECIES	145									ENSMZEG00005005708	ENSMZEG00005005452	ENSMZEG00005005383	prelid1b (ENSMZEG00005005365)	ENSMZEG00005005350 ##15	ENSMZEG00005005337	ENSMZEG00005005289	ENSMZEG00005005270 #22	ENSMZEG00005005161	ENSMZEG00005005151	ENSMZEG00005005139
Eastern happy	MODERN SPECIES	15	ENSACLG00000019699	ENSACLG00000019719	ENSACLG00000019744	ENSACLG00000019756	ENSACLG00000019802	cyp17a2 (ENSACLG00000019809)	ENSACLG00000019841	ENSACLG00000019847	ENSACLG00000019855	ENSACLG00000019899	ENSACLG00000019912	prelid1b (ENSACLG00000019956)	ENSACLG00000019982 ##15	ENSACLG00000019994	ENSACLG00000020028	ENSACLG00000020124 #22	ENSACLG00000020147	ENSACLG00000020232	ENSACLG00000020246	ENSACLG00000020252	ENSACLG00000020312	ENSACLG00000020318	ENSACLG00000020325	ENSACLG00000020368	ENSACLG00000020387	ENSACLG00000020398	ENSACLG00000020435	ENSACLG00000020451	ENSACLG00000020467	ENSACLG00000020501	ENSACLG00000020507
Nile tilapia	MODERN SPECIES	15	ENSONIG00000027806	ENSONIG00000029130	ENSONIG00000032864	ENSONIG00000033823	ENSONIG00000039525	ENSONIG00000013680	ENSONIG00000031946	cyp17a2 (ENSONIG00000013683)	ENSONIG00000013693	ENSONIG00000028868	spp120 (ENSONIG00000013697)	prelid1b (ENSONIG00000013701)	ENSONIG00000028700 ##15	ENSONIG00000013702	ENSONIG00000013704	ENSONIG00000013707 #22	ENSONIG00000036670	ENSONIG00000028122	ENSONIG00000039800	ENSONIG00000034690	ENSONIG00000041823	ENSONIG00000032564	ENSONIG00000029450	ENSONIG00000038034	ENSONIG00000037349	ENSONIG00000013715	ENSONIG00000027563	ENSONIG00000035075	ENSONIG00000035933	ENSONIG00000036593	ENSONIG00000031622
Midas cichlid	MODERN SPECIES	880									cyp17a2 (ENSACIG00000021382)	ENSACIG00000021365	ENSACIG00000021341	prelid1b (ENSACIG00000021327)	ENSACIG00000021309 ##15	ENSACIG00000021298	ENSACIG00000021264	ENSACIG00000021192 #22
Percomorphaceae_C	ANCESTRAL SPECIES	20	ENSGT00940000175283	ENSGT00940000154950.y.b #24	ENSGT00940000157370.a #30	ENSGT00940000168653.a	ENSGT00940000164868.C.c.a	ENSGT00940000165048.a	ENSGT00530000063713.b.b	ENSGT00940000160184.c.a	ENSGT00940000155588.a	ENSGT00950000183109.d.e.a	ENSGT00390000017614.e.b	ENSGT00950000182810.B.b.a.b	ENSGT00940000154108.b.a.b ##15	ENSGT00530000064170.d	ENSGT00940000163785.a.a.a	ENSGT00930000150973.B.e.a #22	ENSGT01100000263536.B.d	ENSGT00940000159295	ENSGT00940000165601	ENSGT00940000176993	ENSGT00940000163711.b.e.a.b	ENSGT00940000177043	ENSGT00940000156074.a.a	ENSGT00940000157059.x	ENSGT00940000157103	ENSGT00390000013285.h #11	ENSGT00940000175251	ENSGT00940000153664.A.a	ENSGT00950000182805.a.a.b.b	ENSGT00500000046195	ENSGT00940000162467.a.b
Eupercaria	ANCESTRAL SPECIES	29	ENSGT00940000165297.a.b	ENSGT00940000165297.a.a	ENSGT00440000037582	ENSGT01030000234558.A.a.a.a	ENSGT00390000018426	ENSGT00390000005492.c	ENSGT00940000156074.a.a	ENSGT00940000157059.x	ENSGT00940000157103	ENSGT00390000013285.h #11	ENSGT00940000175251	ENSGT00950000182810.B.b.a.b	ENSGT00940000154108.b.a.b ##15	ENSGT00530000064170.d	ENSGT00940000163785.a.a.a	ENSGT00930000150973.B.e.a #22	ENSGT01100000263536.B.d
Eupecaria_A	ANCESTRAL SPECIES	28	ENSGT00940000165297.a.b	ENSGT00940000165297.a.a	ENSGT00440000037582	ENSGT01030000234558.A.a.a.a	ENSGT00390000018426	ENSGT00390000005492.c	ENSGT00940000156074.a.a	ENSGT00940000157059.x	ENSGT00940000157103	ENSGT00390000013285.h #11	ENSGT00940000175251	ENSGT00950000182810.B.b.a.b	ENSGT00940000154108.b.a.b ##15	ENSGT00530000064170.d	ENSGT00940000163785.a.a.a	ENSGT00930000150973.B.e.a #22	ENSGT01100000263536.B.d
Eupecaria_B	ANCESTRAL SPECIES	27	ENSGT00940000165297.a.b	ENSGT00940000165297.a.a	ENSGT00440000037582	ENSGT01030000234558.A.a.a.a	ENSGT00390000018426	ENSGT00390000005492.c	ENSGT00940000156074.a.a	ENSGT00940000157059.x	ENSGT00940000157103	ENSGT00390000013285.h #11	ENSGT00940000175251	ENSGT00950000182810.B.b.a.b	ENSGT00940000154108.b.a.b ##15	ENSGT00530000064170.d	ENSGT00940000163785.a.a.a	ENSGT00930000150973.B.e.a #22	ENSGT01100000263536.B.d
Eupecaria_C	ANCESTRAL SPECIES	60												ENSGT00950000182810.B.b.a.b	ENSGT00940000154108.b.a.b ##15	ENSGT00530000064170.d	ENSGT00940000163785.a.a.a	ENSGT00930000150973.B.e.a #22	ENSGT01100000263536.B.d	ENSGT00940000159295	ENSGT00940000164427.b	ENSGT00940000175251	ENSGT00390000013285.h #11	ENSGT00940000157103	ENSGT00940000157059.x	ENSGT00940000156074.a.a	ENSGT00940000177043	ENSGT00940000163711.b.e.a.b	ENSGT01090000261220
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	106												ENSGT00950000182810.B.b.a.b	ENSGT00940000154108.b.a.b ##15	ENSGT00530000064170.d	ENSGT00940000163785.a.a.a	ENSGT00930000150973.B.e.a #22	ENSGT00940000159295	ENSGT00940000164427.b
European seabass	MODERN SPECIES	12	ENSDLAG00005028199	ENSDLAG00005013016	ENSDLAG00005033247	ENSDLAG00005031779	ENSDLAG00005003593	ENSDLAG00005010572	ENSDLAG00005030350	ENSDLAG00005019174	ENSDLAG00005020219	ENSDLAG00005027620	ENSDLAG00005016839	ENSDLAG00005026344	ENSDLAG00005028529	ENSDLAG00005003514 ##15	ENSDLAG00005031259	ENSDLAG00005029846 #22	ENSDLAG00005003855	ENSDLAG00005033638	ENSDLAG00005030832	ENSDLAG00005012721	ENSDLAG00005021724	ENSDLAG00005032909	ENSDLAG00005028288	ENSDLAG00005028915	ENSDLAG00005028030	ENSDLAG00005030479	ENSDLAG00005027968	ENSDLAG00005029918	ENSDLAG00005029225	ENSDLAG00005027450	ENSDLAG00005028093
Gilthead seabream	MODERN SPECIES	1	ENSSAUG00010005132	ENSSAUG00010005131	ENSSAUG00010005130	ENSSAUG00010005128	ENSSAUG00010005125	ENSSAUG00010005123	ENSSAUG00010005119	ENSSAUG00010005117	ENSSAUG00010005116	ENSSAUG00010005115	ENSSAUG00010004445	prelid1b (ENSSAUG00010004434)	ENSSAUG00010004432 ##15	ENSSAUG00010004428	ENSSAUG00010004418	ENSSAUG00010004413 #22	ENSSAUG00010004410	ENSSAUG00010004381	KIF1C (ENSSAUG00010004344)	ENSSAUG00010004304	ENSSAUG00010004292	ENSSAUG00010004289	ENSSAUG00010004281	ENSSAUG00010004276	ENSSAUG00010004273	ENSSAUG00010004270	ENSSAUG00010004256	ENSSAUG00010004253	ENSSAUG00010004249	ENSSAUG00010004245	ENSSAUG00010004237
Perciformes	ANCESTRAL SPECIES																	ENSGT00930000150973.B.e.a #22
Perciformes_a	ANCESTRAL SPECIES																	ENSGT00930000150973.B.e.a #22
Pike perch	MODERN SPECIES	410																ENSSLUG00000004660 #22	ENSSLUG00000004644	ENSSLUG00000004636
Percomorphaceae_D	ANCESTRAL SPECIES	20										ENSGT01030000240121	ENSGT00390000017614.e.b	ENSGT00950000182810.B.b.a.b	ENSGT00940000154108.b.a.b ##15	ENSGT00530000064170.d	ENSGT00940000163785.a.a.a	ENSGT00930000150973.B.e.a #22	ENSGT00950000183109.d.e.a	ENSGT00940000155588.a	ENSGT00940000160184.c.a	ENSGT00530000063713.b.b	ENSGT00940000165048.a	ENSGT00940000167339	ENSGT00940000168653.a	ENSGT00940000157370.a #30	ENSGT00940000154950.y.b #24	ENSGT00940000175283	ENSGT00940000164073.b	ENSGT00940000158059.h	ENSGT00930000151042	ENSGT00950000182917.a.a.a.a	ENSGT00940000154706.rb.a
Anabantaria	ANCESTRAL SPECIES	19	ENSGT00940000175283	ENSGT00940000154950.y.b #24	ENSGT00940000157370.a #30	ENSGT00940000168653.a	ENSGT00940000165048.a	ENSGT00530000063713.b.b	ENSGT00940000160184.c.a	ENSGT00940000155588.a	ENSGT00950000183109.d.e.a	ENSGT01030000240121	ENSGT00390000017614.e.b	ENSGT00950000182810.B.b.a.b	ENSGT00940000154108.b.a.b ##15	ENSGT00530000064170.d	ENSGT00940000163785.a.a.a	ENSGT00930000150973.B.e.a #22
Anabantoidei	ANCESTRAL SPECIES	24	ENSGT00930000151042	ENSGT00940000164073.b	ENSGT00940000175283	ENSGT00940000154950.y.b #24	ENSGT00940000157370.a #30	ENSGT00940000165048.a	ENSGT00530000063713.b.b	ENSGT00940000160184.c.a	ENSGT00940000155588.a	ENSGT00950000183109.d.e.a	ENSGT00390000017614.e.b	ENSGT00950000182810.B.b.a.b	ENSGT00940000154108.b.a.b ##15	ENSGT00530000064170.d	ENSGT00940000163785.a.a.a	ENSGT00930000150973.B.e.a #22
Climbing perch	MODERN SPECIES	9	ENSATEG00000010437	ENSATEG00000010428	ENSATEG00000010419 #24	ENSATEG00000010404 #30	ENSATEG00000010294	ENSATEG00000010211	ENSATEG00000028211	cyp17a2 (ENSATEG00000010156)	ENSATEG00000010147	prelid1b (ENSATEG00000010141)	ENSATEG00000010115	ENSATEG00000010099	ENSATEG00000028129 ##15	ENSATEG00000010067	ENSATEG00000010001	ENSATEG00000009958 #22	ENSATEG00000025679	ENSATEG00000026718	ENSATEG00000028068	ENSATEG00000008957	ENSATEG00000027543	ENSATEG00000029362	ENSATEG00000009824	ENSATEG00000025658	ENSATEG00000009681	ENSATEG00000003021	ENSATEG00000009490	ENSATEG00000009871	ENSATEG00000028841	ENSATEG00000008880	ENSATEG00000030001
Zig-zag eel	MODERN SPECIES	9	ENSMAMG00000007468	ENSMAMG00000010190	ENSMAMG00000024294	ENSMAMG00000010089	ENSMAMG00000024485	ENSMAMG00000010063	ENSMAMG00000010015	ENSMAMG00000010260	ENSMAMG00000009989	ENSMAMG00000010628	ENSMAMG00000024486	ENSMAMG00000027624	ENSMAMG00000025186	ENSMAMG00000009973 ##15	ENSMAMG00000009968	ENSMAMG00000025080 #22	ENSMAMG00000009902	cyp17a2 (ENSMAMG00000009877)	ENSMAMG00000027450	ENSMAMG00000009855	ENSMAMG00000009840	ENSMAMG00000009791	ENSMAMG00000028612	ENSMAMG00000009739	ENSMAMG00000009729 #30	ENSMAMG00000009716 #24	ENSMAMG00000009706	ENSMAMG00000009693	ENSMAMG00000009660	ENSMAMG00000025333	ENSMAMG00000026405
Carangaria	ANCESTRAL SPECIES	20	ENSGT00940000163711.b.e.a.b	ENSGT00940000177043	ENSGT00390000013285.h #11	ENSGT00940000157103	ENSGT00940000157059.x	ENSGT00940000156074.a.a	ENSGT00940000153582.a.m.a.a.a.b	ENSGT00940000165601	ENSGT00940000159295	ENSGT01100000263536.B.d	ENSGT00390000017614.e.b	ENSGT00950000182810.B.b.a.b	ENSGT00940000154108.b.a.b ##15	ENSGT00530000064170.d	ENSGT00940000163785.a.a.a	ENSGT00930000150973.B.e.a #22	ENSGT00950000183109.d.e.a	ENSGT00940000155588.a	ENSGT00940000160184.c.a	ENSGT00530000063713.b.b	ENSGT00940000165048.a	ENSGT00940000167339	ENSGT00940000168653.a	ENSGT00940000157370.a #30	ENSGT00940000154950.y.b #24	ENSGT00940000175283	ENSGT00940000164073.b	ENSGT00940000158059.h	ENSGT00930000151042	ENSGT00950000182917.a.a.a.a	ENSGT00940000154706.rb.a
Carangaria_A	ANCESTRAL SPECIES	77													ENSGT00940000154108.b.a.b ##15	ENSGT00530000064170.d	ENSGT00940000163785.a.a.a	ENSGT00930000150973.B.e.a #22	ENSGT00950000183109.d.e.a	ENSGT00940000155588.a	ENSGT00940000160184.c.a	ENSGT00530000063713.b.b	ENSGT00940000165048.a	ENSGT00940000168653.a	ENSGT00940000157370.a #30	ENSGT00940000154950.y.b #24	ENSGT00940000175283	ENSGT00940000164073.b	ENSGT00940000158059.h	ENSGT00930000151042	ENSGT00950000182917.a.a.a.a	ENSGT00940000153942.a.e.b	ENSGT00940000153727.a
Seriola	ANCESTRAL SPECIES	108							ENSGT00940000164427.b	ENSGT00940000159295	ENSGT01030000235249.b	ENSGT01100000263536.B.d	ENSGT00390000017614.e.b	ENSGT00950000182810.B.b.a.b	ENSGT00940000154108.b.a.b ##15	ENSGT00530000064170.d	ENSGT00940000163785.a.a.a	ENSGT00930000150973.B.e.a #22	ENSGT00950000183109.d.e.a	ENSGT00940000155588.a	ENSGT00940000160184.c.a	ENSGT00530000063713.b.b	ENSGT00940000165048.a	ENSGT00940000167339	ENSGT00940000168653.a	ENSGT00940000157370.a #30	ENSGT00940000154950.y.b #24	ENSGT00940000175283	ENSGT00940000164073.b	ENSGT00940000158059.h	ENSGT00930000151042	ENSGT00950000182917.a.a.a.a	ENSGT00940000153942.a.e.b
Greater amberjack	MODERN SPECIES	120				ENSSDUG00000000973	ENSSDUG00000000952	ENSSDUG00000000934	ENSSDUG00000000924	ENSSDUG00000000907	ENSSDUG00000000882	KIF1C (ENSSDUG00000000775)	ENSSDUG00000000759	prelid1b (ENSSDUG00000000726)	ENSSDUG00000000718 ##15	ENSSDUG00000000714	ENSSDUG00000000629	ENSSDUG00000000608 #22	ENSSDUG00000000599	ENSSDUG00000000580	cyp17a2 (ENSSDUG00000000529)	ENSSDUG00000000514	ENSSDUG00000000507	ENSSDUG00000000496	ENSSDUG00000000394	ENSSDUG00000000315	ENSSDUG00000000291	ENSSDUG00000000284 #30	aimp1b (ENSSDUG00000000194) #24	ENSSDUG00000000181	ENSSDUG00000000175
Yellowtail amberjack	MODERN SPECIES	2925		ENSSLDG00000005889	ENSSLDG00000005904	ENSSLDG00000005922	ENSSLDG00000005936	ENSSLDG00000005953	ENSSLDG00000005967	KIF1C (ENSSLDG00000005987)	ENSSLDG00000006127	ENSSLDG00000006135	ENSSLDG00000006152	prelid1b (ENSSLDG00000006176)	ENSSLDG00000006191 ##15	ENSSLDG00000006199	ENSSLDG00000006211	ENSSLDG00000006277 #22	ENSSLDG00000006288	cyp17a2 (ENSSLDG00000006320)	ENSSLDG00000006351	ENSSLDG00000006390	ENSSLDG00000006406	ENSSLDG00000006424	ENSSLDG00000006448 #30	aimp1b (ENSSLDG00000006461) #24	ENSSLDG00000006474	ENSSLDG00000006490	ENSSLDG00000006510	ENSSLDG00000006556	ENSSLDG00000006618	ENSSLDG00000006738	ENSSLDG00000006759
Barramundi perch	MODERN SPECIES	643										KIF1C (ENSLCAG00010020121)	ENSLCAG00010020125	prelid1b (ENSLCAG00010020126)	ENSLCAG00010020128 ##15	ENSLCAG00010020131	ENSLCAG00010020134	ENSLCAG00010020140 #22	ENSLCAG00010020144	ENSLCAG00010020145	cyp17a2 (ENSLCAG00010020162)
Pleuronectoidei	ANCESTRAL SPECIES	50	ENSGT00390000005094.h	ENSGT00390000005544	ENSGT00390000005492.c	ENSGT00390000013285.h #11	ENSGT00940000157103	ENSGT00940000157059.x	ENSGT00940000156074.a.a	ENSGT00940000153582.a.m.a.a.a.b	ENSGT00940000165601	ENSGT00940000159295	ENSGT01100000263536.B.d	ENSGT00390000017614.e.b	ENSGT00940000154108.b.a.b ##15	ENSGT00530000064170.d	ENSGT00940000163785.a.a.a	ENSGT00930000150973.B.e.a #22	ENSGT00950000183109.d.e.a	ENSGT00940000155588.a	ENSGT00940000160184.c.a	ENSGT00530000063713.b.b	ENSGT00940000165048.a	ENSGT00940000157370.a #30	ENSGT00940000154950.y.b #24	ENSGT00940000175283	ENSGT00940000164073.b	ENSGT00940000158059.h	ENSGT00930000151042	ENSGT00950000182917.a.a.a.a	ENSGT00940000154706.rb.a	ENSGT00940000153942.a.e.b	ENSGT00940000153727.a
Tongue sole	MODERN SPECIES		ENSCSEG00000005480	ENSCSEG00000005474	ENSCSEG00000005468	wdr55 (ENSCSEG00000005463)	ENSCSEG00000005458	ENSCSEG00000005455	TTC39B (ENSCSEG00000005444)	ENSCSEG00000005411	ENSCSEG00000005438	ENSCSEG00000005408	ENSCSEG00000005405	aimp1b (ENSCSEG00000005388) #24	sgms2b (ENSCSEG00000005377) #30	ENSCSEG00000005375	ENSCSEG00000005358	ENSCSEG00000005326 #22	ENSCSEG00000005321	cyp17a2 (ENSCSEG00000005313)	ENSCSEG00000005306	ENSCSEG00000005302	KIF1C (ENSCSEG00000005292)	ndc80 (ENSCSEG00000005286)	ENSCSEG00000005278	CNGA1 (ENSCSEG00000005263)	NFXL1 (ENSCSEG00000005256)	CORIN (ENSCSEG00000005246)	ENSCSEG00000005239 #11	ENSCSEG00000005233	ift46 (ENSCSEG00000005228)	ENSCSEG00000005219	ENSCSEG00000005217
Turbot	MODERN SPECIES	11	ENSSMAG00000018195	ENSSMAG00000018088 #11	ENSSMAG00000017995	ENSSMAG00000017819	ENSSMAG00000017811	ENSSMAG00000017796	ENSSMAG00000028261	ENSSMAG00000017785	ENSSMAG00000017745	ENSSMAG00000029399	ENSSMAG00000034053	ENSSMAG00000017685	ENSSMAG00000034865 ##15	ENSSMAG00000023107	ENSSMAG00000017616	ENSSMAG00000017584 #22	ENSSMAG00000017580	ENSSMAG00000017546	ENSSMAG00000017535	ENSSMAG00000017521	ENSSMAG00000017513	ENSSMAG00000017485	ENSSMAG00000017500	ENSSMAG00000017422 #30	aimp1b (ENSSMAG00000017397) #24	ENSSMAG00000017404	ENSSMAG00000017355	ENSSMAG00000017334	ENSSMAG00000017315	ENSSMAG00000017260	ENSSMAG00000017244
Pinecone sodierfish	MODERN SPECIES	9	cyp17a2 (ENSMMDG00005001721)	ENSMMDG00005001746	ENSMMDG00005001748	ENSMMDG00005001752	ENSMMDG00005001758	sgms2b (ENSMMDG00005001763) #30	aimp1b (ENSMMDG00005001775) #24	ENSMMDG00005001827	ENSMMDG00005001831	ENSMMDG00005001836	ENSMMDG00005001838	ENSMMDG00005001840	ENSMMDG00005001844	ENSMMDG00005001847	ENSMMDG00005001850	ENSMMDG00005001857 #22	ENSMMDG00005001875	ENSMMDG00005001877	ENSMMDG00005001883	slc6a22.2 (ENSMMDG00005001912)	slc6a22.2 (ENSMMDG00005001922)	ENSMMDG00005001927	ENSMMDG00005001931	slc6a22.2 (ENSMMDG00005001937)	ENSMMDG00005001952	slc6a22.2 (ENSMMDG00005002013)	anapc10 (ENSMMDG00005002021)	ENSMMDG00005002040	ENSMMDG00005002369	SMAD1 (ENSMMDG00005002381)	slc10a7 (ENSMMDG00005002396)
Cod	MODERN SPECIES	8	ENSGMOG00000031128	ENSGMOG00000030769	ENSGMOG00000028165	acap1 (ENSGMOG00000016844)	ENSGMOG00000023958	ENSGMOG00000013899	ENSGMOG00000027757	ENSGMOG00000029597	ENSGMOG00000031769	ENSGMOG00000034256	ENSGMOG00000033695	ENSGMOG00000001479	ENSGMOG00000026279	ENSGMOG00000023770	ENSGMOG00000001975	ENSGMOG00000024114 #22	ENSGMOG00000028427 #30	ENSGMOG00000006919 #24	ENSGMOG00000030782	ENSGMOG00000034910	ENSGMOG00000000880	ENSGMOG00000035516	ENSGMOG00000029605	ENSGMOG00000003749	ENSGMOG00000029063	ENSGMOG00000035846	ENSGMOG00000032312	ENSGMOG00000026409	ENSGMOG00000029512	ENSGMOG00000031926	ENSGMOG00000033373
Osteoglossocephalai	ANCESTRAL SPECIES	14	ENSGT00940000155588.a	ENSGT00950000183109.d	ENSGT00940000160120	ENSGT00950000182810.B.b.a.a	ENSGT00390000006684	ENSGT00390000007535	ENSGT00530000064170.c	ENSGT00950000182991.B	ENSGT00940000159801.A	ENSGT00940000154108.b.a.a #15	ENSGT00940000160003 #17	ENSGT00390000017004.a.a #18	ENSGT00950000183088.a.b.b #19	ENSGT00390000005218 #20	ENSGT00390000004446 #21	ENSGT00930000150973.B.e.b #22	ENSGT00940000158244 #23	ENSGT00940000154950.y.a #24	ENSGT00940000164073.a	ENSGT00390000009613.b #29	ENSGT00940000157370.b #30	ENSGT00940000157714 #31	ENSGT00940000159984 #32	ENSGT00940000159660 #33	ENSGT00940000158059	ENSGT00940000155140	ENSGT00390000008798.c	ENSGT00940000157887	ENSGT00950000182917.a.a.a.b	ENSGT00390000005708	ENSGT00940000154706.rb.b
Clupeocephala	ANCESTRAL SPECIES	26	ENSGT00390000015948.a	ENSGT00950000183109.d.e.b	ENSGT00940000160120	ENSGT00950000182810.B.b.a.a	ENSGT00390000006684	ENSGT00390000007535	ENSGT00530000064170.c	ENSGT00950000182991.B	ENSGT00940000159801.A	ENSGT00940000154108.b.a.a #15	ENSGT00940000160003 #17	ENSGT00390000017004.a.a #18	ENSGT00950000183088.a.b.b #19	ENSGT00390000005218 #20	ENSGT00390000004446 #21	ENSGT00930000150973.B.e.b #22	ENSGT00940000156796.c.a	ENSGT00940000166257	ENSGT00940000156796.c.b	ENSGT00940000161510	ENSGT00940000158244 #23	ENSGT00940000154950.y.a #24	ENSGT00940000164073.a	ENSGT00390000009613.b #29	ENSGT00940000157370.b #30	ENSGT00940000157714 #31	ENSGT00940000159984 #32	ENSGT00940000159660.j #33	ENSGT00940000158059.g	ENSGT00940000155140	ENSGT00390000008798.c
Otomorpha	ANCESTRAL SPECIES	57															ENSGT00390000004446 #21	ENSGT00930000150973.B.e.b #22	ENSGT00940000156796.c.a.h	ENSGT00940000158244 #23	ENSGT00940000154950.y.a #24	ENSGT00940000164073.a	ENSGT00390000009613.b #29	ENSGT00940000157370.b #30	ENSGT00940000157714 #31	ENSGT00940000159984 #32	ENSGT00940000159660.j #33	ENSGT00940000158059.g	ENSGT00940000155140	ENSGT00390000008798.c	ENSGT00940000157887	ENSGT00950000182917.a.a.a.b	ENSGT00390000005708
Otophysi	ANCESTRAL SPECIES	79									ENSGT00940000155140.s	ENSGT00940000158059.g	ENSGT00940000159660.j #33	ENSGT00940000159984 #32	ENSGT00940000157714 #31	ENSGT00940000157370.b #30	ENSGT00390000004446 #21	ENSGT00930000150973.B.e.b #22	ENSGT00940000158244 #23	ENSGT00940000154950.y.a #24	ENSGT00940000164073.a	ENSGT00390000009613.b #29	ENSGT00940000159025	ENSGT00940000166376	ENSGT00940000156633.d.a	ENSGT00940000163989.a.b	ENSGT00940000165755.b	ENSGT00940000158189	ENSGT00950000183033.a.b.a	ENSGT01030000234528.A.a.a	ENSGT00570000079168.b.b.b	ENSGT00940000156589	ENSGT00940000160382
Characiphysae	ANCESTRAL SPECIES	9	ENSGT00950000182915.a.a.b	ENSGT00390000008828.fb.b	ENSGT00950000183201.b.a.b	ENSGT00940000154259.b.b	ENSGT00940000154810.jb	ENSGT00940000162502.a	ENSGT00940000157807.g.b	ENSGT01100000263483.E.b.a.c.b	ENSGT00940000155140.s	ENSGT00940000158059.g	ENSGT00940000159660.j #33	ENSGT00940000159984 #32	ENSGT00940000157714 #31	ENSGT00940000157370.b #30	ENSGT00390000004446 #21	ENSGT00930000150973.B.e.b #22	ENSGT00940000158244 #23	ENSGT00940000154950.y.a #24	ENSGT00940000164073.a	ENSGT00390000009613.b #29	ENSGT00940000159025	ENSGT00940000166376	ENSGT00940000156633.d.a	ENSGT00940000163989.a.b	ENSGT00940000165755.b	ENSGT00940000158189	ENSGT00950000183033.a.b.a	ENSGT01030000234528.A.a.a	ENSGT00570000079168.b.b.b	ENSGT00940000156589	ENSGT00940000160382
Channel catfish	MODERN SPECIES	22	ENSIPUG00000009411	ENSIPUG00000009403	ENSIPUG00000009345	ENSIPUG00000009331	ENSIPUG00000009321	ENSIPUG00000009313	ENSIPUG00000009291	CASP6 (ENSIPUG00000009042)	ENSIPUG00000009010	mcub (ENSIPUG00000009001)	LEF1 (ENSIPUG00000008946) #33	hadh (ENSIPUG00000008863) #32	cyp2u1 (ENSIPUG00000008854) #31	sgms2 (ENSIPUG00000008837) #30	gstcd (ENSIPUG00000008765) #21	npnt (ENSIPUG00000008639) #22	TBCK (ENSIPUG00000008423) #23	aimp1a (ENSIPUG00000008314) #24	dkk2 (ENSIPUG00000008298)	papss1 (ENSIPUG00000008270) #29	pkd2 (ENSIPUG00000008177)	abcg2d (ENSIPUG00000008137)	ENSIPUG00000008124	abcg2d (ENSIPUG00000007849)	ppm1kb (ENSIPUG00000007801)	ENSIPUG00000007786	ENSIPUG00000007765	ENSIPUG00000007758	herc56.4 (ENSIPUG00000007647)	HERC3 (ENSIPUG00000007471)	FAM13A (ENSIPUG00000007390)
Characiphysae_b	ANCESTRAL SPECIES	76	ENSGT00390000008828.fb.b	ENSGT00950000183201.b.a.b	ENSGT01030000234601.r.a.c	ENSGT00940000154259.b.b	ENSGT00940000154810.jb	ENSGT00940000162502.a	ENSGT00940000157807.g.b	ENSGT01100000263483.E.b.a.c.b	ENSGT00940000155140.s	ENSGT00940000158059.g	ENSGT00940000159660.j #33	ENSGT00940000159984 #32	ENSGT00940000157714 #31	ENSGT00940000157370.b #30	ENSGT00390000004446 #21	ENSGT00930000150973.B.e.b #22	ENSGT00940000158244 #23	ENSGT00940000154950.y.a #24	ENSGT00940000164073.a	ENSGT00390000009613.b #29	ENSGT00940000159025	ENSGT00940000166376	ENSGT00940000156633.d.a	ENSGT00940000175002	ENSGT00940000165755.a	ENSGT00940000158189	ENSGT00950000183033.a.b.a	ENSGT01030000234528.A.a.a	ENSGT00570000079168.b.b.b	ENSGT00940000156589	ENSGT00940000160382
Characoidei	ANCESTRAL SPECIES	83	ENSGT00940000155980.B	ENSGT00940000169481	ENSGT00940000158942.a	ENSGT00950000183012.A.b	ENSGT00510000052942	ENSGT00510000052596.b	ENSGT01100000263483.E.b.a.c.b.c	ENSGT00940000155140.s.f	ENSGT00940000155140.s.e	ENSGT00940000158059.g	ENSGT00940000159660.j #33	ENSGT00940000159984 #32	ENSGT00940000157714 #31	ENSGT00940000157370.b #30	ENSGT00390000004446 #21	ENSGT00930000150973.B.e.b #22	ENSGT00940000158244 #23	ENSGT00940000154950.y.a #24	ENSGT00940000164073.a	ENSGT00390000009613.b #29	ENSGT00940000159025	ENSGT00940000166376	ENSGT00940000156633.d.a	ENSGT00940000163989.a.b	ENSGT00940000165755.b	ENSGT00940000165755.a	ENSGT00940000158189	ENSGT00950000183033.a.b.a	ENSGT01030000234528.A.a.a	ENSGT00570000079168.b.b.b	ENSGT00940000156589
Red-bellied piranha	MODERN SPECIES	75	smad1 (ENSPNAG00000018876)	ABCE1 (ENSPNAG00000018952)	ENSPNAG00000018976 #22	hhip (ENSPNAG00000019049)	ENSPNAG00000019064	frem3 (ENSPNAG00000019126)	CASP6 (ENSPNAG00000019149)	ENSPNAG00000019163	lef1 (ENSPNAG00000019234) #33	hadh (ENSPNAG00000019256) #32	cyp2u1 (ENSPNAG00000019273) #31	sgms2a (ENSPNAG00000019292) #30	ENSPNAG00000019334	gstcd (ENSPNAG00000019351) #21	ENSPNAG00000019372	npnta (ENSPNAG00000019459) #22
Mexicana tetra	MODERN SPECIES	17	tmem176 (ENSAMXG00000010274)	vps37c (ENSAMXG00000038699)	ENSAMXG00000034110	ENSAMXG00000010268	ENSAMXG00000010267	ENSAMXG00000024933	CASP6 (ENSAMXG00000010264)	CASP6 (ENSAMXG00000010263)	ENSAMXG00000033159	ENSAMXG00000010258	lef1 (ENSAMXG00000038706) #33	hadh (ENSAMXG00000010252) #32	cyp2u1 (ENSAMXG00000010249) #31	sgms2a (ENSAMXG00000010245) #30	gstcd (ENSAMXG00000010240) #21	npnta (ENSAMXG00000019000) #22	tbck (ENSAMXG00000019079) #23	aimp1a (ENSAMXG00000019203) #24	dkk2 (ENSAMXG00000030417)	papss1 (ENSAMXG00000019274) #29	pkd2 (ENSAMXG00000019444)	abcg2d (ENSAMXG00000019573)	ppm1kb (ENSAMXG00000041919)	ENSAMXG00000019740	ENSAMXG00000019935	ENSAMXG00000036890	ENSAMXG00000031762	ENSAMXG00000035159	ENSAMXG00000037419	ENSAMXG00000034810	TCIRG1 (ENSAMXG00000031176)
Electric eel	MODERN SPECIES	960												hadh (ENSEEEG00000011398) #32	cyp2u1 (ENSEEEG00000011395) #31	sgms2a (ENSEEEG00000011393) #30	gstcd (ENSEEEG00000011375) #21	npnta (ENSEEEG00000011370) #22
Cyprinoidei	ANCESTRAL SPECIES	30				ENSGT01050000244827.D.b.b.b	ENSGT01030000234567.A.a.a.a.a.b.f	ENSGT00980000198902	ENSGT00940000168136	ENSGT00940000156184.a	ENSGT00940000159205	ENSGT00940000163031.b.a.a	ENSGT00940000159660.j #33	ENSGT00940000159984 #32	ENSGT00940000157714 #31	ENSGT00940000157370.b #30	ENSGT00390000004446 #21	ENSGT00930000150973.B.e.b #22	ENSGT00940000158244 #23	ENSGT00940000154950.y.a #24	ENSGT00940000164073.a	ENSGT00390000009613.b #29	ENSGT00940000159025	ENSGT00940000166376	ENSGT00940000156633.d.a	ENSGT00940000175002	ENSGT00940000165755.b.f	ENSGT00940000158189	ENSGT00950000183033.a.b.a	ENSGT01030000234528.A.a.a	ENSGT00570000079168.b.b.b	ENSGT00390000004396.h	ENSGT00940000156171.h
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	38	ENSGT00940000167432.g	ENSGT00570000079168.b.b.b.bb.a	ENSGT00950000183033.a.b.a.nc	ENSGT00940000158189.t.a	ENSGT00940000165755.b.e.a	ENSGT00980000198902	ENSGT00940000168136	ENSGT00940000156184.a.c	ENSGT00940000159205.db	ENSGT00940000163031.b.a.a.b	ENSGT00940000159660.j.b #33	ENSGT00940000159984.b #32	ENSGT00940000157714.l #31	ENSGT00940000157370.b.h #30	ENSGT00390000004446.i #21	ENSGT00930000150973.B.e.b.a #22	ENSGT00940000158244.f #23	ENSGT00940000154950.y.a.a #24	ENSGT00940000164073.a.g	ENSGT00390000009613.b.g #29	ENSGT00940000159025.a	ENSGT00940000166376.k	ENSGT00940000156633.d.a.a	ENSGT00940000175002	ENSGT00940000165755.b.f.a.b.b	ENSGT01030000234567.A.a.a.a.a.b.f	ENSGT01050000244827.D.b.b.b.a	ENSGT01030000234610.b.a.b.a.m.b	ENSGT00940000166025.a.b	ENSGT00940000166377.f.b	ENSGT00940000153342.a.c
Cyprininae_a	ANCESTRAL SPECIES	66	ENSGT00940000167432.g	ENSGT00570000079168.b.b.b.bb.a	ENSGT00950000183033.a.b.a.nc	ENSGT00940000158189.t.a	ENSGT00940000165755.b.e.a	ENSGT00980000198902	ENSGT00940000168136	ENSGT00940000156184.a.c	ENSGT00940000159205.db	ENSGT00940000163031.b.a.a.b	ENSGT00940000159660.j.b #33	ENSGT00940000159984.b #32	ENSGT00940000157714.l #31	ENSGT00940000157370.b.h #30	ENSGT00390000004446.i.b #21	ENSGT00930000150973.B.e.b.a #22	ENSGT00940000158244.f #23	ENSGT00940000154950.y.a.a #24	ENSGT00940000164073.a.g	ENSGT00390000009613.b.g #29	ENSGT00940000159025.a	ENSGT00940000166376.k	ENSGT00940000156633.d.a.a	ENSGT00940000165755.b.f.a.b.b	ENSGT01030000234567.A.a.a.a.a.b.f	ENSGT01050000244827.D.b.b.b.a	ENSGT00940000166025.a.a.a	ENSGT01030000234610.b.a.b.a.m.b	ENSGT00940000166025.a.b	ENSGT00940000166377.f.b	ENSGT00940000153342.a.c
Golden-line barbel	MODERN SPECIES	50	ugp2a (ENSSGRG00000014565)	otx2a (ENSSGRG00000014559)	ENSSGRG00000014557	ENSSGRG00000014554	FAM13A (ENSSGRG00000014549)	herc3 (ENSSGRG00000014158)	ENSSGRG00000014136	ENSSGRG00000014135	slkb (ENSSGRG00000013889)	tsga10 (ENSSGRG00000013886)	lef1 (ENSSGRG00000013870) #33	hadh (ENSSGRG00000013869) #32	cyp2u1 (ENSSGRG00000013868) #31	sgms2a (ENSSGRG00000013867) #30	gstcd (ENSSGRG00000013856) #21	npnta (ENSSGRG00000013845) #22	tbck (ENSSGRG00000013788) #23	aimp1a (ENSSGRG00000013786) #24	ENSSGRG00000013785	dkk2 (ENSSGRG00000013784)	papss1 (ENSSGRG00000012522) #29	pkd2 (ENSSGRG00000012197)	abcg2d (ENSSGRG00000011534)	ppm1kb (ENSSGRG00000011519)	ENSSGRG00000011518	ITPRIP (ENSSGRG00000011516)	zp3c (ENSSGRG00000011514)	CALHM1 (ENSSGRG00000011512)	zgc:175214 (ENSSGRG00000011510)	atp5md (ENSSGRG00000011507)	taf5 (ENSSGRG00000011503)
Common carp reference	MODERN SPECIES	22	otx2a (ENSCCRG00000079168)	ENSCCRG00000045974	FAM13A (ENSCCRG00000053503)	herc3 (ENSCCRG00000015479)	ENSCCRG00000037889	ENSCCRG00000037746	col17a1a (ENSCCRG00000069314)	slkb (ENSCCRG00000017145)	tsga10 (ENSCCRG00000051824)	ENSCCRG00000074534	lef1 (ENSCCRG00000054171) #33	hadh (ENSCCRG00000008946) #32	cyp2u1 (ENSCCRG00000067421) #31	sgms2a (ENSCCRG00000008752) #30	gstcd (ENSCCRG00000058210) #21	npnta (ENSCCRG00000037685) #22	tbck (ENSCCRG00000067399) #23	aimp1a (ENSCCRG00000074903) #24	dkk2 (ENSCCRG00000056997)	papss1 (ENSCCRG00000043458) #29	abcg2d (ENSCCRG00000047785)	pkd2 (ENSCCRG00000043486)	ENSCCRG00000021702	ENSCCRG00000021709	ENSCCRG00000061509	zp3c (ENSCCRG00000021706)	ENSCCRG00000021700	ENSCCRG00000007522	ENSCCRG00000038023	msx1b (ENSCCRG00000075887)	caly (ENSCCRG00000045194)
Goldfish	MODERN SPECIES		spast (ENSCARG00000001881)	ugp2a (ENSCARG00000001834)	mdh1aa (ENSCARG00000001809)	otx2a (ENSCARG00000001799)	ENSCARG00000001797	FAM13A (ENSCARG00000001731)	herc3 (ENSCARG00000001667)	ENSCARG00000001579	ENSCARG00000001554	slkb (ENSCARG00000000832)	tsga10 (ENSCARG00000000604)	ENSCARG00000000592	lef1 (ENSCARG00000000579) #33	sgms2a (ENSCARG00000000571) #30	gstcd (ENSCARG00000000525) #21	npnta (ENSCARG00000000477) #22	tbck (ENSCARG00000000449) #23	aimp1a (ENSCARG00000000438) #24	ENSCARG00000000433	dkk2 (ENSCARG00000000424)	papss1 (ENSCARG00000000350) #29	pkd2 (ENSCARG00000000156)	ppm1kb (ENSCARG00000009159)	ENSCARG00000009154	ENSCARG00000009141	zp3c (ENSCARG00000009127)	ITPRIP (ENSCARG00000009118)	CALHM1 (ENSCARG00000009112)	zgc:175214 (ENSCARG00000009109)	atp5md (ENSCARG00000009104)	taf5 (ENSCARG00000009085)
Cyprininae	ANCESTRAL SPECIES	710								ENSGT00940000156184.a.d	ENSGT00940000159205.eb	ENSGT00940000163031.b.a.a.a	ENSGT00940000159660.j.a #33	ENSGT00940000159984.a #32	ENSGT00940000157714.k #31	ENSGT00940000157370.b.g #30	ENSGT00390000004446.j #21	ENSGT00930000150973.B.e.b.b #22	ENSGT00940000158244.e #23	ENSGT00940000154950.y.a.b #24	ENSGT00990000205111
Goldfish	DUPLICATION
Goldfish	MODERN SPECIES	18	smarca5 (ENSCARG00000013247)	ENSCARG00000012157	ENSCARG00000012067	caly (ENSCARG00000012057)	ENSCARG00000012051	si:dkeyp-80c12.8 (ENSCARG00000012038)	gsk3bb (ENSCARG00000011970)	taf5 (ENSCARG00000011750)	atp5md (ENSCARG00000011724)	pdcd11 (ENSCARG00000011697)	zgc:175214 (ENSCARG00000011679)	lef1 (ENSCARG00000011646) #33	hadh (ENSCARG00000011632) #32	cyp2u1 (ENSCARG00000011624) #31	sgms2a (ENSCARG00000011618) #30	npnta (ENSCARG00000011500) #22	tbck (ENSCARG00000011370) #23	aimp1a (ENSCARG00000011334) #24	ENSCARG00000011320	ENSCARG00000008374	ENSCARG00000008217	ENSCARG00000008223	caly (ENSCARG00000008210)	ENSCARG00000008199	si:dkeyp-80c12.8 (ENSCARG00000008191)	gsk3bb (ENSCARG00000008132)	taf5 (ENSCARG00000007611)	atp5md (ENSCARG00000007576)	pdcd11 (ENSCARG00000007532)	zgc:175214 (ENSCARG00000007508)	CALHM1 (ENSCARG00000007502)
Goldfish	MODERN SPECIES	18	mdh1aa (ENSCARG00000029087)	otx2a (ENSCARG00000029112)	ENSCARG00000029115	zgc:154142 (ENSCARG00000029126)	FAM13A (ENSCARG00000029249)	herc3 (ENSCARG00000030707)	ENSCARG00000030985	slkb (ENSCARG00000031145)	tsga10 (ENSCARG00000036965)	ENSCARG00000036990	lef1 (ENSCARG00000003902) #33	hadh (ENSCARG00000003991) #32	cyp2u1 (ENSCARG00000004040) #31	sgms2a (ENSCARG00000004057) #30	ENSCARG00000004069 #21	npnta (ENSCARG00000004092) #22	tbck (ENSCARG00000004186) #23	aimp1a (ENSCARG00000004429) #24	ENSCARG00000004442	dkk2 (ENSCARG00000004459)	papss1 (ENSCARG00000004595) #29	papss1 (ENSCARG00000005781) #29	pkd2 (ENSCARG00000006655)	abcg2d (ENSCARG00000006837)	ppm1kb (ENSCARG00000007419)	ENSCARG00000007429	ENSCARG00000007481	ITPRIP (ENSCARG00000007486)	CALHM1 (ENSCARG00000007502)	zgc:175214 (ENSCARG00000007508)	pdcd11 (ENSCARG00000007532)
Cyprininae_a	ANCESTRAL SPECIES	64	ENSGT00530000063410.a.r.d.a	ENSGT00940000167432.h	ENSGT00570000079168.b.b.b.bb.b	ENSGT01030000234528.A.a.a	ENSGT00950000183033.a.b.a.oc	ENSGT00940000158189.t.b.a	ENSGT00940000165755.b.e.b	ENSGT00940000156184.a.d	ENSGT00940000159205.eb	ENSGT00940000163031.b.a.a.a	ENSGT00940000159660.j.a #33	ENSGT00940000159984.a #32	ENSGT00940000157714.k #31	ENSGT00940000157370.b.g #30	ENSGT00390000004446.i.a #21	ENSGT00930000150973.B.e.b.b #22	ENSGT00940000158244.e #23	ENSGT00940000154950.y.a.b #24	ENSGT00940000164073.a.h	ENSGT00390000009613.b.h #29	ENSGT00940000159025.b	ENSGT00940000166376.l	ENSGT00940000156633.d.a.b	ENSGT00940000165755.b.f.a.b.a
Common carp reference	MODERN SPECIES	27	ENSCCRG00000009748	ENSCCRG00000068508	zgc:154142 (ENSCCRG00000015426)	FAM13A (ENSCCRG00000072001)	herc3 (ENSCCRG00000022882)	ENSCCRG00000066863	col17a1a (ENSCCRG00000073322)	slkb (ENSCCRG00000037660)	tsga10 (ENSCCRG00000000253)	ENSCCRG00000000290	lef1 (ENSCCRG00000073428) #33	hadh (ENSCCRG00000082295) #32	cyp2u1 (ENSCCRG00000008936) #31	sgms2a (ENSCCRG00000008950) #30	gstcd (ENSCCRG00000038725) #21	npnta (ENSCCRG00000082342) #22	tbck (ENSCCRG00000033744) #23	aimp1a (ENSCCRG00000043575) #24	dkk2 (ENSCCRG00000043571)	papss1 (ENSCCRG00000025335) #29	pkd2 (ENSCCRG00000047369)	abcg2d (ENSCCRG00000021720)	ENSCCRG00000037777	ENSCCRG00000070355	ENSCCRG00000060180	CALHM1 (ENSCCRG00000021704)	zgc:175214 (ENSCCRG00000078817)	pdcd11 (ENSCCRG00000037943)	atp5md (ENSCCRG00000037950)	taf5 (ENSCCRG00000021916)	gsk3bb (ENSCCRG00000076785)
Golden-line barbel	MODERN SPECIES	182	mdh1aa (ENSSGRG00000002310)	otx2a (ENSSGRG00000004968)	ENSSGRG00000004970	zgc:154142 (ENSSGRG00000004975)	FAM13A (ENSSGRG00000005009)	ENSSGRG00000006526	herc3 (ENSSGRG00000006528)	slkb (ENSSGRG00000006742)	tsga10 (ENSSGRG00000007018)	ENSSGRG00000007027	lef1 (ENSSGRG00000007033) #33	hadh (ENSSGRG00000007044) #32	cyp2u1 (ENSSGRG00000007103) #31	sgms2a (ENSSGRG00000007104) #30	gstcd (ENSSGRG00000007106) #21	npnta (ENSSGRG00000007109) #22	tbck (ENSSGRG00000007114) #23	aimp1a (ENSSGRG00000008038) #24	ENSSGRG00000008041	dkk2 (ENSSGRG00000008043)	papss1 (ENSSGRG00000008047) #29	pkd2 (ENSSGRG00000008250)	abcg2d (ENSSGRG00000008607)	ppm1kb (ENSSGRG00000008608)	ENSSGRG00000008609	ENSSGRG00000008612	ENSSGRG00000008617
Zebrafish	MODERN SPECIES		CALHM1 (ENSDARG00000005314)	ITPRIP (ENSDARG00000036479)	zp3c (ENSDARG00000092919)	herc56.4 (ENSDARG00000074052)	herc56.3 (ENSDARG00000074136)	herc56.2 (ENSDARG00000075389)	col17a1a (ENSDARG00000069415)	slkb (ENSDARG00000012574)	tsga10 (ENSDARG00000052512)	ENSDARG00000079501	lef1 (ENSDARG00000031894) #33	hadh (ENSDARG00000030765) #32	cyp2u1 (ENSDARG00000026548) #31	sgms2a (ENSDARG00000052520) #30	gstcd (ENSDARG00000036494) #21	npnta (ENSDARG00000018721) #22	ENSDARG00000114696	tbck (ENSDARG00000013667) #23	aimp1a (ENSDARG00000060036) #24	dkk2 (ENSDARG00000076420)	papss1 (ENSDARG00000057099) #29	pkd2 (ENSDARG00000014098)	abcg2d (ENSDARG00000016818)	ppm1kb (ENSDARG00000010655)	ENSDARG00000075785	herc3 (ENSDARG00000075887)	FAM13A (ENSDARG00000075564)	ENSDARG00000116732	zgc:154142 (ENSDARG00000100792)	ENSDARG00000075043	otx2a (ENSDARG00000030703)
Clupeiformes	ANCESTRAL SPECIES	494															ENSGT00390000004446 #21	ENSGT00930000150973.B.e.b #22	ENSGT00940000156796.c.a.h	ENSGT00940000158244 #23	ENSGT00940000154950.y.a #24	ENSGT00940000164073.a	ENSGT00390000009613.b #29	ENSGT00940000157370.b #30
Denticle herring	MODERN SPECIES	14	pou4f2 (ENSDCDG00000026125)	lsm6 (ENSDCDG00000026123)	ZNF827 (ENSDCDG00000026118)	zgc:152968 (ENSDCDG00000026111)	mmaa (ENSDCDG00000026110)	melk (ENSDCDG00000026097)	pax5 (ENSDCDG00000026044)	zcchc7 (ENSDCDG00000026038)	WDR19 (ENSDCDG00000026000)	klhl5 (ENSDCDG00000025981)	fam114a1 (ENSDCDG00000025974)	klf3 (ENSDCDG00000025957)	TBC1D1 (ENSDCDG00000025945)	pgm2 (ENSDCDG00000024023)	gstcd (ENSDCDG00000023996) #21	npnta (ENSDCDG00000023908) #22	ENSDCDG00000023894	tbck (ENSDCDG00000023851) #23	ENSDCDG00000023844	aimp1a (ENSDCDG00000023843) #24	dkk2 (ENSDCDG00000023842)	papss1 (ENSDCDG00000023030) #29	sgms2a (ENSDCDG00000023004) #30	col11a1b (ENSDCDG00000022963)	CLDN18 (ENSDCDG00000022952)	clta (ENSDCDG00000022916)	gne (ENSDCDG00000022908)	smad1 (ENSDCDG00000022862)	abce1 (ENSDCDG00000022829)	ripk1l (ENSDCDG00000022821)	PHLPP1 (ENSDCDG00000022557)
Atlantic herring	MODERN SPECIES		ARHGAP44 (ENSCHAG00000026709)	hs3st3b1a (ENSCHAG00000026733)	pmp22a (ENSCHAG00000026735)	cdc42ep4a (ENSCHAG00000026740)	SDK2 (ENSCHAG00000026810)	ttyh2l (ENSCHAG00000027164)	CHMP6 (ENSCHAG00000027169)	baiap2a (ENSCHAG00000027180)	ENSCHAG00000027189	AATK (ENSCHAG00000027190)	cdip1 (ENSCHAG00000027192)	ENSCHAG00000027194	septin2 (ENSCHAG00000027199)	bokb (ENSCHAG00000027232)	gstcd (ENSCHAG00000027239) #21	npnta (ENSCHAG00000027244) #22	ENSCHAG00000027251	ENSCHAG00000027255	ENSCHAG00000027262	tbck (ENSCHAG00000027281) #23	aimp1a (ENSCHAG00000027316) #24	papss1 (ENSCHAG00000027338) #29	sgms2a (ENSCHAG00000027373) #30	gper1 (ENSCHAG00000027377)	BAIAP3 (ENSCHAG00000027381)	ENSCHAG00000027393	il21r.1 (ENSCHAG00000027395)	USP31 (ENSCHAG00000027403)	IGFALS (ENSCHAG00000027409)	ENSCHAG00000027411	hs3st4 (ENSCHAG00000027412)
Euteleosteomorpha	ANCESTRAL SPECIES	38	ENSGT00390000015948.a	ENSGT00950000183109.d.e.b	ENSGT00940000160120	ENSGT00950000182810.B.b.a.a	ENSGT00390000006684	ENSGT00390000007535	ENSGT00530000064170.c	ENSGT00950000182991.B	ENSGT00940000159801.A	ENSGT00940000154108.b.a.a #15	ENSGT00940000160003 #17	ENSGT00390000017004.a.a #18	ENSGT00950000183088.a.b.b #19	ENSGT00390000005218 #20	ENSGT00390000004446 #21	ENSGT00930000150973.B.e.b #22	ENSGT00940000156796.c.a	ENSGT00940000166257	ENSGT00940000156796.c.b	ENSGT00940000161510	ENSGT00940000158244 #23	ENSGT00940000154950.y.a #24	ENSGT00940000164073.a	ENSGT00390000009613.b #29	ENSGT00940000157370.b #30	ENSGT00940000157714 #31	ENSGT00940000159984 #32	ENSGT00940000159660.j #33	ENSGT00940000158059.g	ENSGT00940000155140	ENSGT00390000008798.c
Protacanthopterygii	ANCESTRAL SPECIES	41	ENSGT00940000157146.a.b	ENSGT00950000183109.d.e.b	ENSGT00940000160120	ENSGT00950000182810.B.b.a.a	ENSGT00390000006684	ENSGT00390000007535	ENSGT00530000064170.c	ENSGT00950000182991.B	ENSGT00940000159801.A	ENSGT00940000154108.b.a.a #15	ENSGT00940000160003 #17	ENSGT00390000017004.a.a #18	ENSGT00950000183088.a.b.b #19	ENSGT00390000005218 #20	ENSGT00390000004446 #21	ENSGT00930000150973.B.e.b #22	ENSGT00940000156796.c.a	ENSGT00940000161510	ENSGT00940000158244 #23	ENSGT00940000154950.y.a #24	ENSGT00940000164073.a	ENSGT00390000009613.b #29	ENSGT00940000157370.b #30	ENSGT00940000157714 #31	ENSGT00940000159984.c #32	ENSGT00940000159660.j #33	ENSGT00940000158059.g	ENSGT00940000155140.hb	ENSGT00390000008798.c	ENSGT00940000157887	ENSGT00950000182917.a.a.a.b
Salmoninae	ANCESTRAL SPECIES	112	ENSGT00940000160120.g.b	ENSGT00950000182810.B.b.a.a.a	ENSGT00390000006684	ENSGT00390000007535	ENSGT00530000064170.c	ENSGT00940000163496.a.u.b.b.b	ENSGT00940000163496.a.u.a.b.a.b.b.a	ENSGT00950000182991.B.i	ENSGT00940000159801.A	ENSGT00940000154108.b.a.a #15	ENSGT00940000160003 #17	ENSGT00390000017004.a.a #18	ENSGT00950000183088.a.b.b #19	ENSGT00390000005218 #20	ENSGT00390000004446 #21	ENSGT00930000150973.B.e.b #22	ENSGT00940000156796.c.a.a.b.b	ENSGT00940000156796.c.a.a.a	ENSGT00940000161510	ENSGT00940000158244.d #23	ENSGT00940000154950.y.a #24	ENSGT00940000164073.a	ENSGT00390000009613.b #29	ENSGT00940000157370.b #30	ENSGT00940000157714 #31	ENSGT00940000159984.c #32	ENSGT00940000159660.i.b #33	ENSGT00940000159660.j #33	ENSGT00940000158059.g.a.a	ENSGT00940000155140.hb	ENSGT00390000008798.c.j.b.a
Huchen	DUPLICATION
Huchen	DUPLICATION
Huchen	MODERN SPECIES	950											TET2 (ENSHHUG00000014939) #17	ppa2 (ENSHHUG00000014952) #18	ARHGEF38 (ENSHHUG00000014974) #19	ints12 (ENSHHUG00000014977) #20	gstcd (ENSHHUG00000014980) #21	npnta (ENSHHUG00000015012) #22	ENSHHUG00000015029	ENSHHUG00000015253	ALOX15B (ENSHHUG00000015256)	ENSHHUG00000015303	tbck (ENSHHUG00000015311) #23	aimp1a (ENSHHUG00000015382) #24	dkk2 (ENSHHUG00000015409)	papss1 (ENSHHUG00000015417) #29	sgms2a (ENSHHUG00000015551) #30	cyp2u1 (ENSHHUG00000015557) #31	hadh (ENSHHUG00000015570) #32	LEF1 (ENSHHUG00000015624) #33
Huchen	MODERN SPECIES	3590															ENSHHUG00000045124 #22	npnta (ENSHHUG00000045118) #22	ENSHHUG00000045020	ENSHHUG00000045011
Huchen	MODERN SPECIES	3590													ENSHHUG00000045011	ENSHHUG00000045020	npnta (ENSHHUG00000045118) #22	ENSHHUG00000045124 #22
Salmoninae_a	ANCESTRAL SPECIES	88	ENSGT00530000063359.B.i.a	ENSGT00390000003068	ENSGT00940000171111	ENSGT00940000156045.b.e.a	ENSGT01100000263505.b.b.a.b.a.b.b.a	ENSGT01100000263491.a.b.b.c.a.a.g	ENSGT01100000263491.a.b.a.a.a.b.a.m.b	ENSGT00950000183109.d.e.b	ENSGT00940000160120.h	ENSGT00940000154108.b.a.a.c #15	ENSGT00940000160003 #17	ENSGT00390000017004.a.a.z #18	ENSGT00950000183088.a.b.b #19	ENSGT00390000005218 #20	ENSGT00390000004446 #21	ENSGT00930000150973.B.e.b #22	ENSGT00940000156796.c.a.a.b.b	ENSGT00940000156796.c.a.a.a.b	ENSGT00940000161510	ENSGT00940000158244.d #23	ENSGT00940000154950.y.a #24	ENSGT00940000164073.a	ENSGT00390000009613.b #29	ENSGT00940000157370.b.d #30	ENSGT00940000157714.o #31	ENSGT00940000159984.c #32	ENSGT00940000159660.j #33	ENSGT00940000158059.g.a.a	ENSGT00940000155140.hb	ENSGT00390000008798.c.j.b.a	ENSGT00940000157887.r
Salmo	DUPLICATION
Salmo	ANCESTRAL SPECIES	139	ENSGT00390000006684	ENSGT00390000007535.x	ENSGT00530000064170.c.f	ENSGT00940000163496.a.u.a.b.b	ENSGT00990000210912.b.b	ENSGT00940000163496.a.u.b.b.a.b.a	ENSGT00940000163496.a.u.a.b.a.b.b.a.a	ENSGT00950000182991.B.i	ENSGT00940000159801.A	ENSGT00940000154108.b.a.a.d #15	ENSGT00940000160003.r #17	ENSGT00390000017004.a.a.y #18	ENSGT00950000183088.a.b.b.g.a #19	ENSGT00390000005218.q #20	ENSGT00390000004446.e #21	ENSGT00930000150973.B.e.b.e #22	ENSGT00940000156796.c.a.a.b.b	ENSGT00940000156796.c.a.a.a.b.b	ENSGT00940000161510.jb	ENSGT00940000158244.d.b #23	ENSGT00940000154950.y.a.j #24	ENSGT00940000164073.a.c
Atlantic salmon	MODERN SPECIES	27	ENSSSAG00000005010	ENSSSAG00000053007	ENSSSAG00000103829	toporsa (ENSSSAG00000052990)	ENSSSAG00000052985	ENSSSAG00000082955	ENSSSAG00000059620	ENSSSAG00000105375	mtap (ENSSSAG00000059647)	CXXC4 (ENSSSAG00000053121) #15	TET2 (ENSSSAG00000053038) #17	IPYR2 (ENSSSAG00000053072) #18	ARHGEF38 (ENSSSAG00000115773) #19	ints12 (ENSSSAG00000052852) #20	gstcd (ENSSSAG00000052843) #21	npnta (ENSSSAG00000084106) #22	ENSSSAG00000004115	ENSSSAG00000092274	loxe3 (ENSSSAG00000052761)	tbck (ENSSSAG00000050819) #23	aimp1 (ENSSSAG00000050766) #24	dkk2 (ENSSSAG00000090555)	papss1 (ENSSSAG00000102084) #29	cyp2u1 (ENSSSAG00000049238) #31	HADH (ENSSSAG00000049172) #32	lef1 (ENSSSAG00000111072) #33	ENSSSAG00000046560	ENSSSAG00000102126	ENSSSAG00000046469	TTC39B (ENSSSAG00000113881)	SNAPC3 (ENSSSAG00000046631)
River trout	MODERN SPECIES	2	ENSSTUG00000012230	MXD4 (ENSSTUG00000012211)	ENSSTUG00000012202	ndufb6 (ENSSTUG00000012184)	toporsa (ENSSTUG00000012170)	ENSSTUG00000012135	ENSSTUG00000012125	mtap (ENSSTUG00000012045)	ENSSTUG00000012032	CXXC4 (ENSSTUG00000012019) #15	TET2 (ENSSTUG00000012007) #17	ppa2 (ENSSTUG00000011955) #18	ARHGEF38 (ENSSTUG00000011944) #19	ints12 (ENSSTUG00000022748) #20	gstcd (ENSSTUG00000022711) #21	npnta (ENSSTUG00000022472) #22	ENSSTUG00000022419	ENSSTUG00000022407	ENSSTUG00000022304	tbck (ENSSTUG00000022110) #23	aimp1a (ENSSTUG00000022080) #24	dkk2 (ENSSTUG00000022075)	papss1 (ENSSTUG00000021727) #29	sgms2a (ENSSTUG00000021710) #30	cyp2u1 (ENSSTUG00000021683) #31	hadh (ENSSTUG00000021565) #32	MCUB (ENSSTUG00000021509)	CASP6 (ENSSTUG00000021419)	ENSSTUG00000021412	PLA2G12A (ENSSTUG00000021403)	pla2g12a (ENSSTUG00000021391)
Salmo	ANCESTRAL SPECIES	80										ENSGT00940000154108.b.a.a.c #15	ENSGT00940000160003.q #17	ENSGT00390000017004.a.a.z #18	ENSGT00950000183088.a.b.b.h #19	ENSGT00390000005218.r #20	ENSGT00390000004446.f #21	ENSGT00930000150973.B.e.b.f #22	ENSGT00940000156796.c.a.a.a.b.a	ENSGT00940000161510.kb	ENSGT00940000158244.d.a #23	ENSGT00940000154950.y.a.i #24	ENSGT00940000164073.a.d	ENSGT00390000009613.b #29	ENSGT00940000157370.b.d #30	ENSGT00940000157714.o #31	ENSGT00940000159984.c.b #32	ENSGT00940000159660.j #33	ENSGT00940000158059.g.a.a	ENSGT00940000155140.hb.b	ENSGT01010000228071	ENSGT00940000155140.hb.a	ENSGT00390000008798.c.j.b.a
River trout	MODERN SPECIES	33	ndufb6 (ENSSTUG00000000706)	ENSSTUG00000000707	ENSSTUG00000000713	ENSSTUG00000000717	ENSSTUG00000000726	ENSSTUG00000000761	ENSSTUG00000000845	mtap (ENSSTUG00000000865)	ENSSTUG00000000880	CXXC4 (ENSSTUG00000000886) #15	TET2 (ENSSTUG00000000892) #17	ppa2 (ENSSTUG00000000900) #18	ARHGEF38 (ENSSTUG00000000914) #19	ints12 (ENSSTUG00000000919) #20	gstcd (ENSSTUG00000000924) #21	npnta (ENSSTUG00000000934) #22	ENSSTUG00000000992	ENSSTUG00000001071	tbck (ENSSTUG00000001185) #23	aimp1a (ENSSTUG00000001679) #24	dkk2 (ENSSTUG00000001701)	papss1 (ENSSTUG00000001733) #29	sgms2a (ENSSTUG00000001916) #30	cyp2u1 (ENSSTUG00000001920) #31	hadh (ENSSTUG00000001923) #32	lef1 (ENSSTUG00000001973) #33	MCUB (ENSSTUG00000002018)	CASP6 (ENSSTUG00000002034)	pla2g12a (ENSSTUG00000002043)	DNAJB14 (ENSSTUG00000002053)	TTC39B (ENSSTUG00000002111)
Atlantic salmon	MODERN SPECIES	23	ENSSSAG00000052968	ENSSSAG00000004064	ENSSSAG00000004068	ENSSSAG00000059604	ENSSSAG00000106987	ENSSSAG00000052963	ENSSSAG00000089306	ENSSSAG00000082930	mtap (ENSSSAG00000052921)	cxxc4 (ENSSSAG00000052885) #15	TET2 (ENSSSAG00000004094) #17	IPYR2 (ENSSSAG00000004079) #18	ARHGEF38 (ENSSSAG00000052863) #19	ints12 (ENSSSAG00000113132) #20	gstcd (ENSSSAG00000108656) #21	npnta (ENSSSAG00000004121) #22	ENSSSAG00000093609	ENSSSAG00000052827	ENSSSAG00000117225	ENSSSAG00000099226	ENSSSAG00000003986	ENSSSAG00000005119	ENSSSAG00000108717	tbck (ENSSSAG00000053246) #23	aimp1a (ENSSSAG00000004110) #24	dkk2 (ENSSSAG00000050762)	papss1 (ENSSSAG00000085906) #29	sgms2a (ENSSSAG00000100072) #30	cyp2u1 (ENSSSAG00000004992) #31	hadh (ENSSSAG00000113995) #32	lef1 (ENSSSAG00000087730) #33
Oncorhynchus	ANCESTRAL SPECIES	6	ENSGT00940000164685.a.a	ENSGT00940000162009.b.j	ENSGT00390000011517.a.a.c.b.m.d	ENSGT00940000154308.A.a.b.b.b.a.b	ENSGT01100000263491.a.b.b.c.a.a.g	ENSGT01020000230338.a.b.b.a.b.a.a.a.b.a	ENSGT01100000263491.a.b.a.a.a.b.a.m.b.a	ENSGT00950000183109.d.e.b	ENSGT00940000160120.h	ENSGT00940000154108.b.a.a.c #15	ENSGT00940000160003 #17	ENSGT00390000017004.a.a.z #18	ENSGT00950000183088.a.b.b #19	ENSGT00390000005218 #20	ENSGT00390000004446 #21	ENSGT00930000150973.B.e.b #22	ENSGT00940000156796.c.a.a.a.a	ENSGT00940000161510	ENSGT00940000158244.d #23	ENSGT00940000154950.y.a #24	ENSGT00940000164073.a.a.a	ENSGT00390000009613.b #29	ENSGT00940000157370.b.d #30	ENSGT00940000157714.o.d #31	ENSGT00940000157714.p #31	ENSGT00940000157370.b.c #30	ENSGT00940000157714.o.c #31	ENSGT00940000159984.c #32	ENSGT00940000159660.j #33	ENSGT00940000158059.g.a.a	ENSGT00940000155140.hb
Oncorhynchus_a	ANCESTRAL SPECIES	140										ENSGT00940000154108.b.a.a.d #15	ENSGT00940000160003 #17	ENSGT00390000017004.a.a.z #18	ENSGT00950000183088.a.b.b #19	ENSGT00390000005218 #20	ENSGT00390000004446 #21	ENSGT00930000150973.B.e.b #22	ENSGT00940000156796.c.a.a.a.a	ENSGT00940000158244.c #23	ENSGT00940000154950.y.a #24	ENSGT00940000164073.a.a.a	ENSGT00390000009613.b #29	ENSGT00940000157370.b.d #30	ENSGT00940000157714.o.d #31	ENSGT00940000159984.c.c #32	ENSGT00940000159660.j #33	ENSGT00940000158059.g.a.a	ENSGT00940000155140.hb	ENSGT00390000008798.c.i	ENSGT00940000157887.q	ENSGT00950000182917.a.a.a.b	ENSGT00390000005708.l
Coho salmon	DUPLICATION
Coho salmon	MODERN SPECIES	27	pkd2 (ENSOKIG00005043428)	ENSOKIG00005043388	g3bp2a (ENSOKIG00005043329)	USO1 (ENSOKIG00005042617)	coro2aa (ENSOKIG00005042273)	TRMO (ENSOKIG00005042220)	ENSOKIG00005042011	ENSOKIG00005041937	ENSOKIG00005041917	anp32b (ENSOKIG00005041745)	ENSOKIG00005041709	ENSOKIG00005041685	ENSOKIG00005041658	ENSOKIG00005041588	ENSOKIG00005041547	NPNT (ENSOKIG00005041301) #22	ENSOKIG00005041143	ENSOKIG00005041078
Coho salmon	MODERN SPECIES	36	ENSOKIG00005030413	mtap (ENSOKIG00005030355)	ENSOKIG00005030342	ENSOKIG00005030234	ENSOKIG00005030106	toporsa (ENSOKIG00005030095)	ndufb6 (ENSOKIG00005030085)	TMEM215 (ENSOKIG00005030080)	ENSOKIG00005030064	CXXC4 (ENSOKIG00005030041) #15	TET2 (ENSOKIG00005030025) #17	ppa2 (ENSOKIG00005029716) #18	ARHGEF38 (ENSOKIG00005029680) #19	ints12 (ENSOKIG00005029672) #20	gstcd (ENSOKIG00005029422) #21	npnta (ENSOKIG00005029265) #22	ENSOKIG00005029187	ENSOKIG00005029033	tbck (ENSOKIG00005028792) #23	aimp1a (ENSOKIG00005028713) #24	dkk2 (ENSOKIG00005028704)	papss1 (ENSOKIG00005027949) #29	sgms2a (ENSOKIG00005027899) #30	cyp2u1 (ENSOKIG00005027886) #31	hadh (ENSOKIG00005027860) #32	lef1 (ENSOKIG00005027778) #33	MCUB (ENSOKIG00005027744)	ENSOKIG00005027696	CASP6 (ENSOKIG00005027676)	PLA2G12A (ENSOKIG00005027649)	dnajb14 (ENSOKIG00005027559)
Rainbow trout	DUPLICATION
Rainbow trout	MODERN SPECIES	10	ENSOMYG00000007776	ENSOMYG00000076988	ENSOMYG00000066231	ENSOMYG00000008032	ENSOMYG00000007685	ENSOMYG00000007433	mtap (ENSOMYG00000007413)	CDN2B (ENSOMYG00000033506)	CXXC4 (ENSOMYG00000033524) #15	ENSOMYG00000056668	TET2 (ENSOMYG00000033566) #17	ppa2 (ENSOMYG00000033655) #18	ARHGEF38 (ENSOMYG00000033852) #19	ints12 (ENSOMYG00000033775) #20	gstcd (ENSOMYG00000033789) #21	npnta (ENSOMYG00000076789) #22	ENSOMYG00000033919	tbck (ENSOMYG00000034169) #23	aimp1a (ENSOMYG00000034432) #24	ENSOMYG00000048001	dkk2 (ENSOMYG00000051355)	papss1 (ENSOMYG00000034731) #29	sgms2a (ENSOMYG00000037740) #30	cyp2u1 (ENSOMYG00000037825) #31	hadh (ENSOMYG00000037867) #32	lef1 (ENSOMYG00000048732) #33	ENSOMYG00000037905	pla2g12a (ENSOMYG00000038124)	ENSOMYG00000038236	TTC39B (ENSOMYG00000038547)	SNAPC3 (ENSOMYG00000038458)
Rainbow trout	MODERN SPECIES	1	ENSOMYG00000062005	ENSOMYG00000056740	ENSOMYG00000070070	ENSOMYG00000062713	ENSOMYG00000007751	ENSOMYG00000052378	mtap (ENSOMYG00000056424)	CDN2B (ENSOMYG00000025290)	CXXC4 (ENSOMYG00000070664) #15	TET2 (ENSOMYG00000072150) #17	ppa2 (ENSOMYG00000065994) #18	ARHGEF38 (ENSOMYG00000073829) #19	ints12 (ENSOMYG00000051852) #20	gstcd (ENSOMYG00000051845) #21	ENSOMYG00000071531	npnta (ENSOMYG00000066555) #22	ENSOMYG00000039022	ENSOMYG00000034047	ENSOMYG00000009546	tbck (ENSOMYG00000050930) #23	aimp1a (ENSOMYG00000009490) #24	ENSOMYG00000072668	dkk2 (ENSOMYG00000054653)	papss1 (ENSOMYG00000037330) #29	sgms2a (ENSOMYG00000037876) #30	cyp2u1 (ENSOMYG00000061438) #31	hadh (ENSOMYG00000056868) #32	lef1 (ENSOMYG00000009410) #33	ENSOMYG00000052925	PLA2G12A (ENSOMYG00000037950)	pla2g12a (ENSOMYG00000038502)
Northern pike	MODERN SPECIES	24	ENSELUG00000031527	ENSELUG00000017418	MXD4 (ENSELUG00000017393)	ENSELUG00000017364	ndufb6 (ENSELUG00000017348)	ENSELUG00000017332	toporsa (ENSELUG00000017342)	mtap (ENSELUG00000017308)	CDKN2B (ENSELUG00000017284)	CXXC4 (ENSELUG00000017249) #15	TET2 (ENSELUG00000017237) #17	ppa2 (ENSELUG00000017225) #18	ARHGEF38 (ENSELUG00000017188) #19	ints12 (ENSELUG00000017146) #20	gstcd (ENSELUG00000017124) #21	npnta (ENSELUG00000017102) #22	ENSELUG00000000638	ENSELUG00000029690	ALOX15B (ENSELUG00000028354)	ALOX15B (ENSELUG00000017066)	tbck (ENSELUG00000017041) #23	aimp1a (ENSELUG00000016943) #24	dkk2 (ENSELUG00000016913)	papss1 (ENSELUG00000016876) #29	sgms2a (ENSELUG00000016817) #30	cyp2u1 (ENSELUG00000016801) #31	hadh (ENSELUG00000016785) #32	lef1 (ENSELUG00000016722) #33	MCUB (ENSELUG00000016676)	casp6a (ENSELUG00000016648)	pla2g12a (ENSELUG00000027040)
Acanthomorphata	ANCESTRAL SPECIES	36	ENSGT00390000017452	ENSGT00390000015948.a	ENSGT00950000183109.d.e.b	ENSGT00940000160120	ENSGT00950000182810.B.b.a.a	ENSGT00390000007535	ENSGT00530000064170.c	ENSGT00950000182991.B	ENSGT00940000159801.A	ENSGT00940000154108.b.a.a #15	ENSGT00940000160003 #17	ENSGT00390000017004.a.a #18	ENSGT00950000183088.a.b.b #19	ENSGT00390000005218 #20	ENSGT00390000004446 #21	ENSGT00930000150973.B.e.b #22	ENSGT00940000156796.c.a	ENSGT00940000166257	ENSGT00940000156796.c.b	ENSGT00940000161510	ENSGT00940000158244 #23	ENSGT00940000154950.y.a #24	ENSGT00940000164073.a	ENSGT00390000009613.b #29	ENSGT00940000157370.b #30	ENSGT00940000157714 #31	ENSGT00940000159984 #32	ENSGT00940000159660.j #33	ENSGT00940000158059.g	ENSGT00940000155140	ENSGT00390000008798.c
Cod	MODERN SPECIES	16	pdcd4a (ENSGMOG00000017926)	ENSGMOG00000028743	ENSGMOG00000035845	ENSGMOG00000017872	ndufb6 (ENSGMOG00000035222)	toporsa (ENSGMOG00000033137)	mtap (ENSGMOG00000017834)	ENSGMOG00000035660	CXXC4 (ENSGMOG00000019812) #15	TET2 (ENSGMOG00000033378) #17	ppa2 (ENSGMOG00000017788) #18	ENSGMOG00000017772 #19	ARHGEF38 (ENSGMOG00000017732) #19	ints12 (ENSGMOG00000017716) #20	gstcd (ENSGMOG00000017674) #21	npnta (ENSGMOG00000035197) #22	tbck (ENSGMOG00000017587) #23	aimp1a (ENSGMOG00000017576) #24	dkk2 (ENSGMOG00000032641)	papss1 (ENSGMOG00000017531) #29	sgms2a (ENSGMOG00000017521) #30	cyp2u1 (ENSGMOG00000017507) #31	hadh (ENSGMOG00000017363) #32	lef1 (ENSGMOG00000017345) #33	MCUB (ENSGMOG00000017309)	ENSGMOG00000017291	ENSGMOG00000027873	ENSGMOG00000030193	ENSGMOG00000026188	PLA2G12A (ENSGMOG00000017185)	ENSGMOG00000017162
Euacanthomorphacea	ANCESTRAL SPECIES	3	ENSGT00390000017452	ENSGT00390000015948.a	ENSGT00950000183109.d.e.b	ENSGT00940000160120	ENSGT00950000182810.B.b.a.a	ENSGT00390000007535	ENSGT00530000064170.c	ENSGT00950000182991.B	ENSGT00940000159801.A	ENSGT00940000154108.b.a.a #15	ENSGT00940000160003 #17	ENSGT00390000017004.a.a #18	ENSGT00950000183088.a.b.b #19	ENSGT00390000005218 #20	ENSGT00390000004446 #21	ENSGT00930000150973.B.e.b #22	ENSGT00940000156796.c.a	ENSGT00940000166257	ENSGT00940000156796.c.b	ENSGT00940000161510	ENSGT00940000158244 #23	ENSGT00940000154950.y.a #24	ENSGT00940000164073.a	ENSGT00390000009613.b #29	ENSGT00940000157370.b #30	ENSGT00940000157714 #31	ENSGT00940000159984 #32	ENSGT00940000159660.j #33	ENSGT00940000158059.g	ENSGT00940000155140	ENSGT00390000008798.c
Pinecone sodierfish	MODERN SPECIES		ENSMMDG00005010356	mogs (ENSMMDG00005010354)	pdcd4a (ENSMMDG00005010043)	MXD4 (ENSMMDG00005010036)	ENSMMDG00005010033	ndufb6 (ENSMMDG00005010032)	toporsa (ENSMMDG00005010031)	mtap (ENSMMDG00005010028)	ENSMMDG00005010005	CXXC4 (ENSMMDG00005009998) #15	TET2 (ENSMMDG00005009989) #17	ppa2 (ENSMMDG00005009960) #18	ARHGEF38 (ENSMMDG00005009949) #19	ints12 (ENSMMDG00005009945) #20	gstcd (ENSMMDG00005009941) #21	npnta (ENSMMDG00005009661) #22	ENSMMDG00005009508	tbck (ENSMMDG00005009260) #23	aimp1a (ENSMMDG00005009224) #24	dkk2 (ENSMMDG00005009215)	papss1 (ENSMMDG00005008865) #29	sgms2a (ENSMMDG00005008725) #30	cyp2u1 (ENSMMDG00005008716) #31	hadh (ENSMMDG00005008710) #32	lef1 (ENSMMDG00005008705) #33	ENSMMDG00005008700	casp6a (ENSMMDG00005008699)	ENSMMDG00005008698	ENSMMDG00005008695	ENSMMDG00005008691	ENSMMDG00005008531
Percomorphaceae	ANCESTRAL SPECIES	17	ENSGT00390000017452	ENSGT00390000015948.a	ENSGT00950000183109.d.e.b	ENSGT00940000160120	ENSGT00950000182810.B.b.a.a	ENSGT00390000007535	ENSGT00530000064170.c	ENSGT00950000182991.B	ENSGT00940000159801.A	ENSGT00940000154108.b.a.a #15	ENSGT00940000160003 #17	ENSGT00390000017004.a.a #18	ENSGT00950000183088.a.b.b #19	ENSGT00390000005218 #20	ENSGT00390000004446 #21	ENSGT00930000150973.B.e.b #22	ENSGT00940000156796.c.a	ENSGT00940000161510	ENSGT00940000156796.c.b	ENSGT00940000166257	ENSGT00940000155191.a.b	ENSGT00940000158244 #23	ENSGT00940000154950.y.a.c #24	ENSGT00940000164073.a	ENSGT00390000009613.b #29	ENSGT00940000157370.b #30	ENSGT00940000157714 #31	ENSGT00940000159984 #32	ENSGT00940000159660.j #33	ENSGT00940000158059.g	ENSGT00940000155140
Tiger tail seahorse	MODERN SPECIES	518	pvalb7 (ENSHCOG00000003583)	ncf4 (ENSHCOG00000003589)	ENSHCOG00000003623	ENSHCOG00000003638	ndufb6 (ENSHCOG00000003650)	toporsa (ENSHCOG00000003662)	ENSHCOG00000003671	mtap (ENSHCOG00000003721)	ENSHCOG00000003726	CXXC4 (ENSHCOG00000003734) #15	TET2 (ENSHCOG00000003746) #17	ppa2 (ENSHCOG00000003790) #18	ARHGEF38 (ENSHCOG00000004074) #19	ints12 (ENSHCOG00000004115) #20	gstcd (ENSHCOG00000004127) #21	npnta (ENSHCOG00000004139) #22	ENSHCOG00000004178	ENSHCOG00000004208	tbck (ENSHCOG00000004247) #23	aimp1a (ENSHCOG00000004278) #24	dkk2 (ENSHCOG00000004288)	papss1 (ENSHCOG00000004311) #29	sgms2a (ENSHCOG00000004321) #30	cyp2u1 (ENSHCOG00000004328) #31	hadh (ENSHCOG00000004334) #32	lef1 (ENSHCOG00000004370) #33	MCUB (ENSHCOG00000004388)	casp6a (ENSHCOG00000004398)	pla2g12a (ENSHCOG00000004405)	dnajb14 (ENSHCOG00000004415)	TTC39B (ENSHCOG00000004429)
Percomorphaceae_B	ANCESTRAL SPECIES		ENSGT00390000017452	ENSGT00390000015948.a	ENSGT00950000183109.d.e.b	ENSGT00940000160120	ENSGT00950000182810.B.b.a.a	ENSGT00390000007535	ENSGT00530000064170.c	ENSGT00950000182991.B	ENSGT00940000159801.A	ENSGT00940000154108.b.a.a #15	ENSGT00940000160003 #17	ENSGT00390000017004.a.a #18	ENSGT00950000183088.a.b.b #19	ENSGT00390000005218 #20	ENSGT00390000004446 #21	ENSGT00930000150973.B.e.b #22	ENSGT00940000156796.c.a.e.b	ENSGT00940000161510	ENSGT00940000166257	ENSGT00940000155191.a.b	ENSGT00940000158244 #23	ENSGT00940000154950.y.a.c #24	ENSGT00940000164073.a	ENSGT00390000009613.b #29	ENSGT00940000157370.b #30	ENSGT00940000157714 #31	ENSGT00940000159984 #32	ENSGT00940000159660.j #33	ENSGT00940000158059.g	ENSGT00940000155140	ENSGT00390000008798.c
Ovalentaria	ANCESTRAL SPECIES		ENSGT00390000017452	ENSGT00390000015948.a	ENSGT00950000183109.d.e.b	ENSGT00940000160120	ENSGT00950000182810.B.b.a.a	ENSGT00390000007535	ENSGT00530000064170.c	ENSGT00950000182991.B	ENSGT00940000159801.A	ENSGT00940000154108.b.a.a #15	ENSGT00940000160003 #17	ENSGT00390000017004.a.a #18	ENSGT00950000183088.a.b.b #19	ENSGT00390000005218 #20	ENSGT00390000004446 #21	ENSGT00930000150973.B.e.b #22	ENSGT00940000161510	ENSGT00940000166257	ENSGT00940000156796.c.a.e.a	ENSGT00940000156796.c.a.e.b	ENSGT00940000158244 #23	ENSGT00940000154950.y.a.c #24	ENSGT00940000164073.a	ENSGT00390000009613.b #29	ENSGT00940000157370.b #30	ENSGT00940000157714 #31	ENSGT00940000159984 #32	ENSGT00940000159660.j #33	ENSGT00940000158059.g	ENSGT00940000155140	ENSGT00390000008798.c
Atherinomorphae	ANCESTRAL SPECIES	20	ENSGT00390000017452	ENSGT00390000015948.a	ENSGT00950000183109.d.e.b	ENSGT00940000160120	ENSGT00950000182810.B.b.a.a	ENSGT00390000007535	ENSGT00530000064170.c	ENSGT00950000182991.B	ENSGT00940000159801.A	ENSGT00940000154108.b.a.a #15	ENSGT00940000160003 #17	ENSGT00390000017004.a.a #18	ENSGT00950000183088.a.b.b #19	ENSGT00390000005218 #20	ENSGT00390000004446 #21	ENSGT00930000150973.B.e.b #22	ENSGT00940000161510	ENSGT00940000155191.a.b	ENSGT00940000158244 #23	ENSGT00940000154950.y.a.c #24	ENSGT00940000164073.a	ENSGT00390000009613.b #29	ENSGT00940000157370.b #30	ENSGT00940000157714 #31	ENSGT00940000159984 #32	ENSGT00940000159660.j #33	ENSGT00940000158059.g	ENSGT00940000155140	ENSGT00390000008798.c	ENSGT00940000157887	ENSGT00950000182917.a.a.a.b
Cyprinodontiformes	ANCESTRAL SPECIES	18	ENSGT00390000017452	ENSGT00390000015948.a	ENSGT00950000183109.d.e.b	ENSGT00940000160120	ENSGT00950000182810.B.b.a.a	ENSGT00390000007535	ENSGT00530000064170.c	ENSGT00950000182991.B	ENSGT00940000159801.A	ENSGT00940000154108.b.a.a #15	ENSGT00940000160003 #17	ENSGT00390000017004.a.a #18	ENSGT00950000183088.a.b.b #19	ENSGT00390000005218 #20	ENSGT00390000004446 #21	ENSGT00930000150973.B.e.b #22	ENSGT00940000166257	ENSGT00940000161510	ENSGT00940000155191.a.b	ENSGT00940000158244 #23	ENSGT00940000154950.y.a.c #24	ENSGT00940000164073.a	ENSGT00390000009613.b #29	ENSGT00940000157370.b #30	ENSGT00940000157714 #31	ENSGT00940000159984 #32	ENSGT00940000159660.j #33	ENSGT00940000158059.g	ENSGT00940000155140	ENSGT00390000008798.c	ENSGT00940000157887
Aplocheiloidei	ANCESTRAL SPECIES	17	ENSGT00390000015948.a	ENSGT00950000183109.d.e.b	ENSGT00940000160120	ENSGT00950000182810.B.b.a.a	ENSGT00390000007535	ENSGT01030000235206	ENSGT00950000182991.B	ENSGT00940000163078	ENSGT00940000162423	ENSGT00940000154108.b.a.a #15	ENSGT00940000160003 #17	ENSGT00390000017004.a.a #18	ENSGT00950000183088.a.b.b #19	ENSGT00390000005218 #20	ENSGT00390000004446 #21	ENSGT00930000150973.B.e.b #22	ENSGT00940000156796.c.a.e.a	ENSGT00940000155191.a.b	ENSGT00940000158244 #23	ENSGT00940000154950.y.a.c #24	ENSGT00940000164073.a	ENSGT00390000009613.b #29	ENSGT00940000157370.b #30	ENSGT00940000157714 #31	ENSGT00940000159984 #32	ENSGT00940000159660.j #33	ENSGT00940000158059.g	ENSGT00940000155140	ENSGT00390000008798.c	ENSGT00940000157887	ENSGT00950000182917.a.a.a.b
Mangrove rivulus	MODERN SPECIES		pdcd4a (ENSKMAG00000001092)	ENSKMAG00000001138	MXD4 (ENSKMAG00000001145)	ENSKMAG00000001187	ndufb6 (ENSKMAG00000001208)	ENSKMAG00000001215	mtap (ENSKMAG00000001228)	CDKN2A (ENSKMAG00000001262)	CXXC4 (ENSKMAG00000001267) #15	TET2 (ENSKMAG00000001281) #17	ppa2 (ENSKMAG00000001296) #18	ARHGEF38 (ENSKMAG00000001303) #19	ints12 (ENSKMAG00000001316) #20	gstcd (ENSKMAG00000001327) #21	ENSKMAG00000001380	npnta (ENSKMAG00000001449) #22	ENSKMAG00000001482	ENSKMAG00000001526	tbck (ENSKMAG00000001587) #23	aimp1a (ENSKMAG00000001709) #24	dkk2 (ENSKMAG00000001744)	papss1 (ENSKMAG00000001759) #29	sgms2a (ENSKMAG00000001795) #30	cyp2u1 (ENSKMAG00000001804) #31	hadh (ENSKMAG00000001893) #32	lef1 (ENSKMAG00000001920) #33	MCUB (ENSKMAG00000001979)	casp6a (ENSKMAG00000001983)	pla2g12a (ENSKMAG00000002001)	dnajb14 (ENSKMAG00000002026)	TTC39B (ENSKMAG00000002037)
Turquoise killifish	MODERN SPECIES	1611	mogs (ENSNFUG00015007335)	PDCD4A (ENSNFUG00015007103)	ENSNFUG00015007098	MXD4 (ENSNFUG00015007090)	Nfu_g_1_018443 (ENSNFUG00015007085)	NDUFB6 (ENSNFUG00015007079)	ENSNFUG00015002430	mtap (ENSNFUG00015002408)	Cdkn2b (ENSNFUG00015002401)	CXXC4 (ENSNFUG00015002398) #15	TET2 (ENSNFUG00015002392) #17	PPA2 (ENSNFUG00015002381) #18	ARHGEF38 (ENSNFUG00015002367) #19	INTS12 (ENSNFUG00015002357) #20	gstcd (ENSNFUG00015002340) #21	NPNT (ENSNFUG00015002304) #22	ALOXE3 (ENSNFUG00015002270)	tbck (ENSNFUG00015002157) #23	AIMP1 (ENSNFUG00015002116) #24	DKK2 (ENSNFUG00015002114)	PAPSS1 (ENSNFUG00015002015) #29	ENSNFUG00015001979	sgms2a (ENSNFUG00015001970) #30	CYP2U1 (ENSNFUG00015001961) #31	CCDC149B (ENSNFUG00015001942)	LGI2B (ENSNFUG00015001914)	C4orf54 (ENSNFUG00015001904)	ENSNFUG00015001897	MTP (ENSNFUG00015001750)	TSPAN5 (ENSNFUG00015001722)	ACER2 (ENSNFUG00015001712)
Cyprinodontoidei	ANCESTRAL SPECIES	15	ENSGT00390000017452	ENSGT00390000015948.a	ENSGT00950000183109.d.e.b	ENSGT00940000160120	ENSGT00950000182810.B.b.a.a	ENSGT00390000007535	ENSGT00530000064170.c	ENSGT00950000182991.B	ENSGT00940000159801.A	ENSGT00940000154108.b.a.a #15	ENSGT00940000160003 #17	ENSGT00390000017004.a.a #18	ENSGT00950000183088.a.b.b #19	ENSGT00390000005218 #20	ENSGT00390000004446 #21	ENSGT00930000150973.B.e.b #22	ENSGT00940000155191.a.b	ENSGT00940000166257	ENSGT00940000161510	ENSGT00940000158244 #23	ENSGT00950000183029.B.j.c.a	ENSGT00940000155933.b.b	ENSGT00940000155134.z	ENSGT00950000182969.B.c.a.b	ENSGT00940000159655	ENSGT00940000160142	ENSGT01030000234667.a.a.a.a.b	ENSGT00390000003628.a.a	ENSGT00940000159647	ENSGT00940000156782.d	ENSGT00940000158572
Poeciliinae	ANCESTRAL SPECIES	9	ENSGT00390000017452	ENSGT00390000015948.a	ENSGT00950000183109.d.e.b	ENSGT00940000160120	ENSGT00950000182810.B.b.a.a	ENSGT00390000007535	ENSGT00530000064170.c	ENSGT00950000182991.B	ENSGT00940000159801.A	ENSGT00940000154108.b.a.a #15	ENSGT00940000160003 #17	ENSGT00390000017004.a.a #18	ENSGT00950000183088.a.b.b #19	ENSGT00390000005218 #20	ENSGT00390000004446 #21	ENSGT00930000150973.B.e.b #22	ENSGT00940000161510.u	ENSGT00940000155191.a.b	ENSGT00940000158244 #23	ENSGT00950000183029.B.j.c.a	ENSGT00940000155933.b.b	ENSGT00940000155134.z	ENSGT00950000182969.B.c.a.b	ENSGT00940000159655	ENSGT00940000160142	ENSGT01030000234667.a.a.a.a.b	ENSGT00390000003628.a.a	ENSGT00940000159647	ENSGT00940000156782.d	ENSGT00940000158572	ENSGT00940000165589.a
Poecilia	ANCESTRAL SPECIES	6	ENSGT00390000017452	ENSGT00390000015948.a	ENSGT00950000183109.d.e.b	ENSGT00940000160120	ENSGT00950000182810.B.b.a.a	ENSGT00390000007535	ENSGT00530000064170.c	ENSGT00950000182991.B	ENSGT00940000159801.A	ENSGT00940000154108.b.a.a #15	ENSGT00940000160003 #17	ENSGT00390000017004.a.a #18	ENSGT00950000183088.a.b.b #19	ENSGT00390000005218 #20	ENSGT00390000004446 #21	ENSGT00930000150973.B.e.b #22	ENSGT00940000178012	ENSGT00940000155191.a.b	ENSGT00940000158244 #23	ENSGT00950000183029.B.j.c.a	ENSGT00940000155933.b.b	ENSGT00940000155134.z	ENSGT00950000182969.B.c.a.b	ENSGT00940000159655	ENSGT00940000160142	ENSGT01030000234667.a.a.a.a.b	ENSGT00390000003628.a.a	ENSGT00940000159647	ENSGT00940000156782.d	ENSGT00940000158572	ENSGT00940000165589.a
NAME_6	ANCESTRAL SPECIES	4	ENSGT00390000017452	ENSGT00390000015948.a	ENSGT00950000183109.d.e.b	ENSGT00940000160120	ENSGT00950000182810.B.b.a.a	ENSGT00390000007535	ENSGT00530000064170.c	ENSGT00950000182991.B	ENSGT00940000159801.A	ENSGT00940000154108.b.a.a #15	ENSGT00940000160003 #17	ENSGT00390000017004.a.a #18	ENSGT00950000183088.a.b.b #19	ENSGT00390000005218 #20	ENSGT00390000004446 #21	ENSGT00930000150973.B.e.b #22	ENSGT00940000155191.a.b	ENSGT00940000158244 #23	ENSGT00950000183029.B.j.c.a	ENSGT00940000155933.b.b	ENSGT00940000155134.z	ENSGT00950000182969.B.c.a.b	ENSGT00940000159655	ENSGT00940000160142	ENSGT01030000234667.a.a.a.a.b	ENSGT00390000003628.a.a	ENSGT00940000159647	ENSGT00940000156782.d	ENSGT00940000158572	ENSGT00940000165589.a.g	ENSGT00940000165589.a.h
Amazon molly	MODERN SPECIES	456	MXD4 (ENSPFOG00000011915)	ENSPFOG00000011962	ndufb6 (ENSPFOG00000011987)	toporsa (ENSPFOG00000011988)	mtap (ENSPFOG00000011997)	ENSPFOG00000012056	CXXC4 (ENSPFOG00000012064) #15	TET2 (ENSPFOG00000021899) #17	ppa2 (ENSPFOG00000012128) #18	ARHGEF38 (ENSPFOG00000012342) #19	CXXC4 (ENSPFOG00000012083) #15	TET2 (ENSPFOG00000012090) #17	ENSPFOG00000023399 #19	ints12 (ENSPFOG00000012447) #20	gstcd (ENSPFOG00000012468) #21	npnta (ENSPFOG00000012587) #22	ENSPFOG00000012681	ENSPFOG00000012877	tbck (ENSPFOG00000013036) #23	EEF1A1 (ENSPFOG00000013175)	ENSPFOG00000013215	RIMS1 (ENSPFOG00000013377)	krt97 (ENSPFOG00000013514)	ENSPFOG00000023545	TNS4 (ENSPFOG00000013685)	ccr7 (ENSPFOG00000013716)	SMARCE1 (ENSPFOG00000013726)	IGFBP4 (ENSPFOG00000013793)	ENSPFOG00000013807	ENSPFOG00000013855	ENSPFOG00000022447
Sailfin molly	MODERN SPECIES	1308												ARHGEF38 (ENSPLAG00000012219) #19	ints12 (ENSPLAG00000012182) #20	gstcd (ENSPLAG00000012159) #21	ENSPLAG00000012119	npnta (ENSPLAG00000012107) #22
Guppy	MODERN SPECIES	439	mogs (ENSPREG00000005610)	pdcd4a (ENSPREG00000005622)	ENSPREG00000005666	MXD4 (ENSPREG00000005708)	ENSPREG00000005744	ndufb6 (ENSPREG00000005786)	ENSPREG00000005897	mtap (ENSPREG00000005908)	ENSPREG00000005931	CXXC4 (ENSPREG00000005992) #15	TET2 (ENSPREG00000006015) #17	ppa2 (ENSPREG00000006039) #18	ARHGEF38 (ENSPREG00000006065) #19	ints12 (ENSPREG00000006102) #20	gstcd (ENSPREG00000006138) #21	npnta (ENSPREG00000006200) #22	ENSPREG00000006272	ZBTB5 (ENSPREG00000006294)	grhprb (ENSPREG00000006318)	UBA6 (ENSPREG00000006373)	POLQ (ENSPREG00000006445)	ENSPREG00000006523	melk (ENSPREG00000006562)	pax5 (ENSPREG00000006606)	zcchc7 (ENSPREG00000006666)	pgm2 (ENSPREG00000006715)	TBC1D1 (ENSPREG00000006835)	klf3 (ENSPREG00000007118)	fam114a1 (ENSPREG00000007162)	klhl5 (ENSPREG00000007223)	WDR19 (ENSPREG00000007291)
Platyfish	MODERN SPECIES	19	mogs (ENSXMAG00000021337)	pdcd4a (ENSXMAG00000005480)	ENSXMAG00000022822	MXD4 (ENSXMAG00000005473)	ENSXMAG00000005463	ndufb6 (ENSXMAG00000005457)	ENSXMAG00000025126	mtap (ENSXMAG00000005446)	ENSXMAG00000005443	CXXC4 (ENSXMAG00000024047) #15	TET2 (ENSXMAG00000005438) #17	ppa2 (ENSXMAG00000005399) #18	ARHGEF38 (ENSXMAG00000005387) #19	ints12 (ENSXMAG00000029835) #20	gstcd (ENSXMAG00000012151) #21	npnta (ENSXMAG00000012135) #22	ENSXMAG00000012085	tbck (ENSXMAG00000012060) #23	EEF1A1 (ENSXMAG00000012048)	ENSXMAG00000012035	RIMS1 (ENSXMAG00000018211)	krt97 (ENSXMAG00000018197)	KRT222 (ENSXMAG00000018192)	TNS4 (ENSXMAG00000023115)	ccr7 (ENSXMAG00000018191)	SMARCE1 (ENSXMAG00000018179)	IGFBP4 (ENSXMAG00000018176)	ENSXMAG00000018173	ENSXMAG00000018158	ENSXMAG00000018157	ENSXMAG00000018154
NAME_4	ANCESTRAL SPECIES	44	ENSGT00390000017452	ENSGT00390000015948.a	ENSGT00950000183109.d.e.b	ENSGT00940000160120	ENSGT00950000182810.B.b.a.a	ENSGT00390000007535	ENSGT00530000064170.c	ENSGT00950000182991.B	ENSGT00940000159801.A	ENSGT00940000154108.b.a.a #15	ENSGT00940000160003 #17	ENSGT00390000017004.a.a #18	ENSGT00950000183088.a.b.b #19	ENSGT00390000005218 #20	ENSGT00390000004446 #21	ENSGT00930000150973.B.e.b #22	ENSGT00940000155191.a.b	ENSGT00940000161510.s	ENSGT00940000158244 #23	ENSGT00950000183029.B.j.c.a	ENSGT00940000155933.b.b	ENSGT00940000155134.z	ENSGT00950000182969.B.c.a.b	ENSGT00940000159655	ENSGT00940000163886.A	ENSGT01030000234667.a.a.a.a.b	ENSGT00390000003628.a.a	ENSGT00940000159647	ENSGT00940000156782.d	ENSGT00940000158572	ENSGT00940000165589.a
Mummichog	MODERN SPECIES	2490	mogs (ENSFHEG00000000528)	pdcd4a (ENSFHEG00000021625)	ENSFHEG00000021649	MXD4 (ENSFHEG00000021700)	ENSFHEG00000021711	ndufb6 (ENSFHEG00000021718)	toporsa (ENSFHEG00000021727)	mtap (ENSFHEG00000021774)	ENSFHEG00000021784	CXXC4 (ENSFHEG00000021796) #15	TET2 (ENSFHEG00000021818) #17	ppa2 (ENSFHEG00000021888) #18	ARHGEF38 (ENSFHEG00000021959) #19	ints12 (ENSFHEG00000021971) #20	gstcd (ENSFHEG00000021983) #21	npnta (ENSFHEG00000022084) #22
Sheepshead minnow	MODERN SPECIES	689							toporsa (ENSCVAG00000021760)	mtap (ENSCVAG00000021753)	ENSCVAG00000000836	CXXC4 (ENSCVAG00000021723) #15	TET2 (ENSCVAG00000021717) #17	ppa2 (ENSCVAG00000021704) #18	ARHGEF38 (ENSCVAG00000021675) #19	ints12 (ENSCVAG00000021666) #20	gstcd (ENSCVAG00000021643) #21	npnta (ENSCVAG00000021581) #22	ENSCVAG00000021488	ENSCVAG00000021468	tbck (ENSCVAG00000021423) #23	EEF1A1 (ENSCVAG00000021241)
Oryzias	ANCESTRAL SPECIES	15	ENSGT00390000017452	ENSGT00390000015948.a	ENSGT00950000183109.d.e.b	ENSGT00940000160120	ENSGT00950000182810.B.b.a.a	ENSGT00390000007535	ENSGT00530000064170.c.d	ENSGT00950000182991.B	ENSGT00940000159801.A	ENSGT00940000154108.b.a.a #15	ENSGT00940000160003 #17	ENSGT00390000017004.a.a #18	ENSGT00950000183088.a.b.b #19	ENSGT00390000005218 #20	ENSGT00390000004446.a #21	ENSGT00930000150973.B.e.b #22	ENSGT00940000161510.q	ENSGT00940000166257.x	ENSGT00940000158244 #23	ENSGT00940000154950.y.a.c #24	ENSGT00940000164073.a	ENSGT00390000009613.b #29	ENSGT00940000157370.b #30	ENSGT00940000157714 #31	ENSGT00940000159984 #32	ENSGT00940000159660.j #33	ENSGT00940000158059.g	ENSGT00940000155140.bb	ENSGT00940000155140.cb	ENSGT00390000008798.c	ENSGT00940000157887
Oryzias_b	ANCESTRAL SPECIES	21	ENSGT00390000017452	ENSGT00390000015948.a	ENSGT00950000183109.d.e.b	ENSGT00940000160120	ENSGT00950000182810.B.b.a.a	ENSGT00390000007535	ENSGT00530000064170.c.d	ENSGT00950000182991.B	ENSGT00940000159801.A	ENSGT00940000154108.b.a.a #15	ENSGT00940000160003 #17	ENSGT00390000017004.a.a #18	ENSGT00950000183088.a.b.b #19	ENSGT00390000005218 #20	ENSGT00390000004446.a #21	ENSGT00930000150973.B.e.b #22	ENSGT00940000161510.q	ENSGT00940000166257.x	ENSGT00940000158244 #23	ENSGT00940000154950.y.a.c #24	ENSGT00940000164073.a	ENSGT00390000009613.b #29	ENSGT00940000157370.b #30	ENSGT00940000157714 #31	ENSGT00940000159984 #32	ENSGT00940000159660.j #33	ENSGT00940000158059.g	ENSGT00940000155140.bb	ENSGT00940000155140.cb	ENSGT00390000008798.c	ENSGT00940000157887
Indian medaka	MODERN SPECIES	21	pdcd4a (ENSOMEG00000006883)	ENSOMEG00000006852	ENSOMEG00000006836	MXD4 (ENSOMEG00000006816)	ENSOMEG00000006788	ndufb6 (ENSOMEG00000006749)	toporsa (ENSOMEG00000006739)	mtap (ENSOMEG00000006729)	ENSOMEG00000006698	CXXC4 (ENSOMEG00000006684) #15	TET2 (ENSOMEG00000006676) #17	ppa2 (ENSOMEG00000006653) #18	ARHGEF38 (ENSOMEG00000006598) #19	ints12 (ENSOMEG00000006563) #20	gstcd (ENSOMEG00000006538) #21	npnta (ENSOMEG00000006485) #22	ALOX15B (ENSOMEG00000006422)	tbck (ENSOMEG00000006254) #23	ENSOMEG00000006113	aimp1a (ENSOMEG00000006090) #24	dkk2 (ENSOMEG00000000755)	papss1 (ENSOMEG00000000132) #29	sgms2a (ENSOMEG00000006023) #30	cyp2u1 (ENSOMEG00000006015) #31	hadh (ENSOMEG00000005991) #32	lef1 (ENSOMEG00000005975) #33	MCUB (ENSOMEG00000005947)	CASP6 (ENSOMEG00000005905)	CASP6 (ENSOMEG00000005877)	ENSOMEG00000005821	CASP6 (ENSOMEG00000005778)
Javanese ricefish	MODERN SPECIES		pdcd4a (ENSOJAG00000005318)	ENSOJAG00000005257	MXD4 (ENSOJAG00000005252)	ENSOJAG00000005243	ndufb6 (ENSOJAG00000005232)	ENSOJAG00000005229	mtap (ENSOJAG00000005086)	ENSOJAG00000005050	LRRC18 (ENSOJAG00000004978)	CXXC4 (ENSOJAG00000004968) #15	TET2 (ENSOJAG00000004947) #17	ppa2 (ENSOJAG00000004874) #18	ENSOJAG00000004849 #19	ints12 (ENSOJAG00000004828) #20	gstcd (ENSOJAG00000004518) #21	npnta (ENSOJAG00000004388) #22	ENSOJAG00000004091	tbck (ENSOJAG00000003624) #23	aimp1a (ENSOJAG00000003494) #24	dkk2 (ENSOJAG00000003491)	papss1 (ENSOJAG00000003251) #29	sgms2a (ENSOJAG00000003220) #30	glb1 (ENSOJAG00000003192)	ENSOJAG00000003160 #21	cyp2u1 (ENSOJAG00000003051) #31	ENSOJAG00000003031	lef1 (ENSOJAG00000003006) #33	MCUB (ENSOJAG00000002975)	CASP6 (ENSOJAG00000002964)	CASP6 (ENSOJAG00000002954)	pla2g12a (ENSOJAG00000002931)
Oryzias_a	ANCESTRAL SPECIES	23	ENSGT00950000183109.d.e.b	ENSGT00940000160120	ENSGT00390000004554.v	ENSGT00940000178944	ENSGT00950000182810.B.b.a.a	ENSGT00390000007535	ENSGT00530000064170.c.d	ENSGT00950000182991.B.c	ENSGT00940000159801.A	ENSGT00940000154108.b.a.a #15	ENSGT00940000160003 #17	ENSGT00390000017004.a.a #18	ENSGT00950000183088.a.b.b #19	ENSGT00390000005218 #20	ENSGT00390000004446.a #21	ENSGT00930000150973.B.e.b #22	ENSGT00940000178012	ENSGT00940000166257.x	ENSGT00940000158244 #23	ENSGT00940000154950.y.a.c #24	ENSGT00940000164073.a	ENSGT00390000009613.b #29	ENSGT00940000157370.b #30	ENSGT00940000157714 #31	ENSGT00940000159984 #32	ENSGT00940000159660.j #33	ENSGT00940000158059.g	ENSGT00940000155140.bb	ENSGT00940000155140.cb	ENSGT00390000008798.c	ENSGT00940000157887
Chinese medaka	MODERN SPECIES	1094	ENSOSIG00000013989	MXD4 (ENSOSIG00000013992)	ENSOSIG00000013993	ENSOSIG00000013996	ENSOSIG00000013999	ndufb6 (ENSOSIG00000014003)	toporsa (ENSOSIG00000014005)	ENSOSIG00000014007	ENSOSIG00000014008	CXXC4 (ENSOSIG00000014011) #15	TET2 (ENSOSIG00000014012) #17	ppa2 (ENSOSIG00000014014) #18	ARHGEF38 (ENSOSIG00000014015) #19	ints12 (ENSOSIG00000014020) #20	GSTCD (ENSOSIG00000014024) #21	npnta (ENSOSIG00000014028) #22	ENSOSIG00000014031
Japanese Medaka HdrR	MODERN SPECIES		ENSORLG00000023233	ENSORLG00000026341	ENSORLG00000006456	ndufb6 (ENSORLG00000006463)	ENSORLG00000006467	ENSORLG00000022960	mtap (ENSORLG00000023618)	ENSORLG00000027369	ENSORLG00000027879	CXXC4 (ENSORLG00000006474) #15	TET2 (ENSORLG00000022090) #17	ppa2 (ENSORLG00000006564) #18	ARHGEF38 (ENSORLG00000006577) #19	ints12 (ENSORLG00000006592) #20	gstcd (ENSORLG00000006613) #21	npnta (ENSORLG00000006656) #22	ENSORLG00000006725	tbck (ENSORLG00000006742) #23	aimp1a (ENSORLG00000006773) #24	dkk2 (ENSORLG00000006785)	papss1 (ENSORLG00000006836) #29	sgms2a (ENSORLG00000030047) #30	cyp2u1 (ENSORLG00000006861) #31	hadh (ENSORLG00000006891) #32	lef1 (ENSORLG00000006924) #33	ENSORLG00000028538	ENSORLG00000029994	ENSORLG00000019600	CASP6 (ENSORLG00000018997)	ENSORLG00000019606	dnajb14 (ENSORLG00000030029)
Ovalentaria_B	ANCESTRAL SPECIES	4	ENSGT00390000017452	ENSGT00390000015948.a	ENSGT00950000183109.d.e.b	ENSGT00940000160120	ENSGT00950000182810.B.b.a.a	ENSGT00390000007535	ENSGT00530000064170.c	ENSGT00950000182991.B	ENSGT00940000159801.A	ENSGT00940000154108.b.a.a #15	ENSGT00940000160003 #17	ENSGT00390000017004.a.a #18	ENSGT00950000183088.a.b.b #19	ENSGT00390000005218 #20	ENSGT00390000004446 #21	ENSGT00930000150973.B.e.b #22	ENSGT00940000156796.c.a.e.b	ENSGT00940000158244 #23	ENSGT00940000154950.y.a.c #24	ENSGT00940000164073.a	ENSGT00390000009613.b #29	ENSGT00940000157370.b #30	ENSGT00940000157714 #31	ENSGT00940000159984 #32	ENSGT00940000159660.j #33	ENSGT00940000158059.g	ENSGT00940000155140	ENSGT00390000008798.c	ENSGT00940000157887	ENSGT00950000182917.a.a.a.b	ENSGT00940000169573
Pomacentridae	ANCESTRAL SPECIES	8	ENSGT00390000017452	ENSGT00390000015948.a	ENSGT00950000183109.d.e.b	ENSGT00940000160120	ENSGT00950000182810.B.b.a.a	ENSGT00390000007535	ENSGT00530000064170.c	ENSGT00950000182991.B	ENSGT00940000159801.A	ENSGT00940000154108.b.a.a #15	ENSGT00940000160003 #17	ENSGT00390000017004.a.a #18	ENSGT00950000183088.a.b.b #19	ENSGT00390000005218 #20	ENSGT00390000004446 #21	ENSGT00930000150973.B.e.b #22	ENSGT00940000156796.c.a.e.b	ENSGT00940000158244 #23	ENSGT00940000154950.y.a.c #24	ENSGT00940000164073.a	ENSGT00390000009613.b #29	ENSGT00940000157370.b #30	ENSGT00940000157714 #31	ENSGT00940000159984 #32	ENSGT00940000159660.j #33	ENSGT00940000158059.g	ENSGT00940000155140	ENSGT00390000008798.c	ENSGT00940000157887	ENSGT00950000182917.a.a.a.b	ENSGT00390000005708
Pomacentridae_A	ANCESTRAL SPECIES	50	ENSGT00390000017452	ENSGT00390000015948.a	ENSGT00950000183109.d.e.b	ENSGT00940000160120	ENSGT00950000182810.B.b.a.a	ENSGT00390000007535	ENSGT00530000064170.c	ENSGT00950000182991.B	ENSGT00940000159801.A	ENSGT00940000154108.b.a.a #15	ENSGT00940000160003 #17	ENSGT00390000017004.a.a #18	ENSGT00950000183088.a.b.b #19	ENSGT00390000005218 #20	ENSGT00390000004446 #21	ENSGT00930000150973.B.e.b #22	ENSGT00940000161510	ENSGT00940000158244 #23	ENSGT00940000154950.y.a.c #24	ENSGT00940000164073.a	ENSGT00390000009613.b #29	ENSGT00940000157370.b #30	ENSGT00940000157714 #31	ENSGT00940000159984 #32	ENSGT00940000159660.j #33	ENSGT00940000158059.g	ENSGT00940000155140	ENSGT00390000008798.c	ENSGT00940000157887	ENSGT00950000182917.a.a.a.b	ENSGT00390000005708
Amphiprion	ANCESTRAL SPECIES		ENSGT00390000017452	ENSGT00390000015948.a	ENSGT00950000183109.d.e.b	ENSGT00940000160120	ENSGT00950000182810.B.b.a.a	ENSGT00390000007535	ENSGT00530000064170.c	ENSGT00950000182991.B	ENSGT00940000159801.A	ENSGT00940000154108.b.a.a #15	ENSGT00940000160003 #17	ENSGT00390000017004.a.a #18	ENSGT00950000183088.a.b.b #19	ENSGT00390000005218 #20	ENSGT00390000004446 #21	ENSGT00930000150973.B.e.b #22	ENSGT00940000166257	ENSGT00940000155191.a.b.f	ENSGT00940000158244 #23	ENSGT00940000155191.a.b.e	ENSGT00940000154950.y.a.c #24	ENSGT00940000164073.a	ENSGT00390000009613.b #29	ENSGT00940000157370.b #30	ENSGT00940000157714 #31	ENSGT00940000159984 #32	ENSGT00940000159660.j #33	ENSGT00940000158059.g	ENSGT00940000155140	ENSGT00390000008798.c	ENSGT00940000157887
Clown anemonefish	MODERN SPECIES	2015																npnta (ENSAOCG00000011473) #22	ENSAOCG00000011492
Orange clownfish	MODERN SPECIES	17	pdcd4a (ENSAPEG00000015119)	ENSAPEG00000015113	ENSAPEG00000015085	MXD4 (ENSAPEG00000014985)	ENSAPEG00000014968	ndufb6 (ENSAPEG00000014933)	ENSAPEG00000014913	mtap (ENSAPEG00000014831)	ENSAPEG00000014816	CXXC4 (ENSAPEG00000014788) #15	TET2 (ENSAPEG00000014776) #17	ppa2 (ENSAPEG00000014741) #18	ARHGEF38 (ENSAPEG00000014720) #19	ints12 (ENSAPEG00000014691) #20	gstcd (ENSAPEG00000014596) #21	npnta (ENSAPEG00000014564) #22	ENSAPEG00000014507	tbck (ENSAPEG00000014390) #23	ENSAPEG00000014357	aimp1a (ENSAPEG00000014340) #24	dkk2 (ENSAPEG00000014294)	papss1 (ENSAPEG00000014192) #29	sgms2a (ENSAPEG00000014163) #30	cyp2u1 (ENSAPEG00000014152) #31	hadh (ENSAPEG00000014140) #32	lef1 (ENSAPEG00000014112) #33	MCUB (ENSAPEG00000014066)	casp6a (ENSAPEG00000014029)	pla2g12a (ENSAPEG00000013988)	dnajb14 (ENSAPEG00000013959)	TTC39B (ENSAPEG00000013901)
Spiny chromis	MODERN SPECIES	165	mogs (ENSAPOG00000018201)	pdcd4a (ENSAPOG00000018171)	ENSAPOG00000018114	MXD4 (ENSAPOG00000018104)	ENSAPOG00000018065	ndufb6 (ENSAPOG00000018058)	toporsa (ENSAPOG00000018033)	mtap (ENSAPOG00000018020)	ENSAPOG00000018007	CXXC4 (ENSAPOG00000017882) #15	TET2 (ENSAPOG00000017873) #17	ppa2 (ENSAPOG00000017862) #18	ARHGEF38 (ENSAPOG00000017853) #19	ints12 (ENSAPOG00000017789) #20	gstcd (ENSAPOG00000017740) #21	npnta (ENSAPOG00000017724) #22	ENSAPOG00000017670	tbck (ENSAPOG00000017549) #23
Bicolor damselfish	MODERN SPECIES	247	mogs (ENSSPAG00000000550)	pdcd4a (ENSSPAG00000000564)	ENSSPAG00000000631	MXD4 (ENSSPAG00000000669)	ENSSPAG00000000702	ndufb6 (ENSSPAG00000000708)	toporsa (ENSSPAG00000000710)	mtap (ENSSPAG00000000720)	ENSSPAG00000000749	CXXC4 (ENSSPAG00000000755) #15	TET2 (ENSSPAG00000000762) #17	ppa2 (ENSSPAG00000000769) #18	ARHGEF38 (ENSSPAG00000000823) #19	ints12 (ENSSPAG00000000842) #20	gstcd (ENSSPAG00000000887) #21	npnta (ENSSPAG00000000947) #22	ENSSPAG00000001003	tbck (ENSSPAG00000001072) #23	aimp1a (ENSSPAG00000001190) #24	dkk2 (ENSSPAG00000001202)	papss1 (ENSSPAG00000001237) #29	sgms2a (ENSSPAG00000001299) #30	cyp2u1 (ENSSPAG00000001313) #31	hadh (ENSSPAG00000001343) #32	lef1 (ENSSPAG00000001570) #33	MCUB (ENSSPAG00000001613)	casp6a (ENSSPAG00000001627)	pla2g12a (ENSSPAG00000001658)	dnajb14 (ENSSPAG00000001667)	TTC39B (ENSSPAG00000001714)	snapc3 (ENSSPAG00000001746)
Cichlidae	ANCESTRAL SPECIES	3	ENSGT00390000017452	ENSGT00390000015948.a	ENSGT00950000183109.d.e.b	ENSGT00940000160120	ENSGT00950000182810.B.b.a.a	ENSGT00390000007535	ENSGT00530000064170.c	ENSGT00950000182991.B	ENSGT00940000159801.A	ENSGT00940000154108.b.a.a #15	ENSGT00940000160003 #17	ENSGT00390000017004.a.a #18	ENSGT00950000183088.a.b.b #19	ENSGT00390000005218 #20	ENSGT00390000004446 #21	ENSGT00930000150973.B.e.b #22	ENSGT00940000156796.c.a.e.b	ENSGT00940000158244 #23	ENSGT00940000154950.y.a.c #24	ENSGT00940000164073.a	ENSGT00390000009613.b #29	ENSGT00940000157370.b #30	ENSGT00940000157714 #31	ENSGT00940000166803	ENSGT00940000159984 #32	ENSGT00940000159660.j #33	ENSGT00940000158059.g	ENSGT00940000155140.db	ENSGT00940000155140.eb	ENSGT00390000008798.c	ENSGT00940000157887
Pseudocrenilabrinae	ANCESTRAL SPECIES	3	ENSGT00390000017452	ENSGT00390000015948.a	ENSGT00950000183109.d.e.b	ENSGT00940000160120	ENSGT00950000182810.B.b.a.a	ENSGT00390000007535	ENSGT00530000064170.c	ENSGT00950000182991.B	ENSGT00940000159801.A	ENSGT00940000154108.b.a.a #15	ENSGT00940000160003 #17	ENSGT00390000017004.a.a #18	ENSGT00950000183088.a.b.b #19	ENSGT00390000005218 #20	ENSGT00390000004446 #21	ENSGT00930000150973.B.e.b #22	ENSGT00940000156796.c.a.e.b.a.a	ENSGT00940000161510.ab	ENSGT00940000166257	ENSGT00940000156796.c.a.e.b.a.b	ENSGT00940000156796.c.a.e.b.b	ENSGT00940000158244 #23	ENSGT00940000154950.y.a.c #24	ENSGT00940000164073.a	ENSGT00390000009613.b #29	ENSGT00940000157370.b #30	ENSGT00940000157714 #31	ENSGT00940000166803	ENSGT00940000159660.j #33	ENSGT00940000158059.g	ENSGT00940000155140.db
Nile tilapia	MODERN SPECIES	18	pdcd4a (ENSONIG00000017552)	ENSONIG00000034285	mxd4 (ENSONIG00000017548)	ENSONIG00000017547	ndufb6 (ENSONIG00000017545)	toporsa (ENSONIG00000040851)	mtap (ENSONIG00000017542)	ENSONIG00000038891	CXXC4 (ENSONIG00000017539) #15	TET2 (ENSONIG00000028706) #17	ppa2 (ENSONIG00000017535) #18	ARHGEF38 (ENSONIG00000017531) #19	ints12 (ENSONIG00000017530) #20	ENSONIG00000041364	gstcd (ENSONIG00000017528) #21	npnta (ENSONIG00000017524) #22	ENSONIG00000009404	ENSONIG00000017517	tbck (ENSONIG00000017514) #23	aimp1a (ENSONIG00000017512) #24	dkk2 (ENSONIG00000017511)	papss1 (ENSONIG00000017508) #29	sgms2a (ENSONIG00000017507) #30	cyp2u1 (ENSONIG00000017505) #31	ENSONIG00000017504	ENSONIG00000041268	lef1 (ENSONIG00000017499) #33	ST6GALNAC6 (ENSONIG00000037018)	MCUB (ENSONIG00000017498)	CASP6 (ENSONIG00000017494)	CASP6 (ENSONIG00000017493)
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	5	ENSGT00390000017452	ENSGT00390000015948.a	ENSGT00950000183109.d.e.b	ENSGT00940000160120	ENSGT00950000182810.B.b.a.a	ENSGT00390000007535	ENSGT00530000064170.c	ENSGT00950000182991.B	ENSGT00940000159801.A	ENSGT00940000154108.b.a.a #15	ENSGT00940000160003 #17	ENSGT00390000017004.a.a #18	ENSGT00950000183088.a.b.b #19	ENSGT00390000005218 #20	ENSGT00390000004446 #21	ENSGT00930000150973.B.e.b #22	ENSGT00940000156796.c.a.e.b.a.a	ENSGT00940000156796.c.a.e.b.a.b	ENSGT00940000156796.c.a.e.b.b	ENSGT00940000158244 #23	ENSGT00940000154950.y.a.c #24	ENSGT00940000164073.a	ENSGT00390000009613.b #29	ENSGT00940000157370.b #30	ENSGT00940000157714 #31	ENSGT00940000166803	ENSGT00940000159660.j #33	ENSGT00940000158059.g	ENSGT00940000155140.db	ENSGT00940000155140.eb.a	ENSGT00940000155140.eb.b
Haplochromini	ANCESTRAL SPECIES	3	ENSGT00390000017452	ENSGT00390000015948.a	ENSGT00950000183109.d.e.b	ENSGT00940000160120	ENSGT00950000182810.B.b.a.a	ENSGT00390000007535	ENSGT00530000064170.c	ENSGT00950000182991.B	ENSGT00940000159801.A	ENSGT00940000154108.b.a.a #15	ENSGT00940000160003 #17	ENSGT00390000017004.a.a #18	ENSGT00950000183088.a.b.b #19	ENSGT00390000005218 #20	ENSGT00390000004446 #21	ENSGT00930000150973.B.e.b #22	ENSGT00940000161510.ab	ENSGT00940000158244 #23	ENSGT00940000154950.y.a.c #24	ENSGT00940000164073.a	ENSGT00390000009613.b #29	ENSGT00940000157370.b #30	ENSGT00940000157714 #31	ENSGT00940000166803	ENSGT00940000159660.j #33	ENSGT00940000158059.g	ENSGT00940000155140.db	ENSGT00940000155140.eb.a	ENSGT00940000155140.eb.b	ENSGT00390000008798.c	ENSGT00940000157887
Haplochromini_A	ANCESTRAL SPECIES	2	ENSGT00390000017452	ENSGT00390000015948.a	ENSGT00950000183109.d.e.b	ENSGT00940000160120	ENSGT00950000182810.B.b.a.a	ENSGT00390000007535	ENSGT00530000064170.c	ENSGT00950000182991.B	ENSGT00940000159801.A	ENSGT00940000154108.b.a.a #15	ENSGT00940000160003 #17	ENSGT00390000017004.a.a #18	ENSGT00950000183088.a.b.b #19	ENSGT00390000005218 #20	ENSGT00390000004446 #21	ENSGT00930000150973.B.e.b #22	ENSGT00940000156796.c.a.e.b.a.a	ENSGT00940000156796.c.a.e.b.a.b	ENSGT00940000156796.c.a.e.b.b	ENSGT00940000158244 #23	ENSGT00940000154950.y.a.c #24	ENSGT00940000164073.a	ENSGT00390000009613.b #29	ENSGT00940000157370.b #30	ENSGT00940000157714 #31	ENSGT00940000166803	ENSGT00940000159660.j #33	ENSGT00940000158059.g	ENSGT00940000155140.db	ENSGT00940000155140.eb.a	ENSGT00940000155140.eb.b
Haplochromini_B	ANCESTRAL SPECIES	8	ENSGT00390000015948.a	ENSGT00950000183109.d.e.b	ENSGT00940000160120	ENSGT00950000182810.B.b.a.a	ENSGT00390000007535	ENSGT00530000064170.c	ENSGT00950000182991.B	ENSGT00940000163078	ENSGT00940000159801.A	ENSGT00940000154108.b.a.a #15	ENSGT00940000160003 #17	ENSGT00390000017004.a.a #18	ENSGT00950000183088.a.b.b #19	ENSGT00390000005218 #20	ENSGT00390000004446 #21	ENSGT00930000150973.B.e.b #22	ENSGT00940000156796.c.a.e.b.a.a	ENSGT00940000156796.c.a.e.b.a.b.a	ENSGT00940000156796.c.a.e.b.b	ENSGT00940000158244 #23	ENSGT00940000154950.y.a.c #24	ENSGT00940000164073.a	ENSGT00390000009613.b #29	ENSGT00940000157370.b #30	ENSGT00940000157714 #31	ENSGT00940000166803	ENSGT00940000159660.j #33	ENSGT00940000158059.g	ENSGT00940000155140.db	ENSGT00940000155140.eb.a	ENSGT00940000155140.eb.b
Zebra mbuna	MODERN SPECIES	1109	mogs (ENSMZEG00005019789)	pdcd4a (ENSMZEG00005019782)	ENSMZEG00005019778	MXD4 (ENSMZEG00005019774)	ENSMZEG00005019768	ndufb6 (ENSMZEG00005019766)	toporsa (ENSMZEG00005019763)	mtap (ENSMZEG00005019759)	ENSMZEG00005019755	CXXC4 (ENSMZEG00005019750) #15	TET2 (ENSMZEG00005019746) #17	ppa2 (ENSMZEG00005019738) #18	ARHGEF38 (ENSMZEG00005019722) #19	ints12 (ENSMZEG00005019718) #20	gstcd (ENSMZEG00005019714) #21	npnta (ENSMZEG00005019704) #22	ENSMZEG00005019690	ENSMZEG00005019686	ENSMZEG00005019673	ENSMZEG00005019669	tbck (ENSMZEG00005019651) #23	aimp1a (ENSMZEG00005019638) #24	dkk2 (ENSMZEG00005019637)	papss1 (ENSMZEG00005019630) #29	sgms2a (ENSMZEG00005019624) #30	cyp2u1 (ENSMZEG00005019621) #31	ENSMZEG00005019612	lef1 (ENSMZEG00005019602) #33	MCUB (ENSMZEG00005019577)	CASP6 (ENSMZEG00005019570)	CASP6 (ENSMZEG00005019564)
Eastern happy	MODERN SPECIES	18	pdcd4a (ENSACLG00000021040)	ENSACLG00000021089	MXD4 (ENSACLG00000021137)	ENSACLG00000021158	ENSACLG00000021172	ndufb6 (ENSACLG00000021203)	toporsa (ENSACLG00000021216)	mtap (ENSACLG00000021260)	CDKN2A (ENSACLG00000021277)	CXXC4 (ENSACLG00000021288) #15	TET2 (ENSACLG00000021294) #17	ppa2 (ENSACLG00000021305) #18	ARHGEF38 (ENSACLG00000021358) #19	ints12 (ENSACLG00000021382) #20	gstcd (ENSACLG00000021418) #21	npnta (ENSACLG00000021444) #22	ENSACLG00000021481	ENSACLG00000021529	ENSACLG00000021571	tbck (ENSACLG00000021641) #23	aimp1a (ENSACLG00000021930) #24	dkk2 (ENSACLG00000021982)	papss1 (ENSACLG00000021989) #29	sgms2a (ENSACLG00000022021) #30	cyp2u1 (ENSACLG00000022053) #31	ENSACLG00000022067	lef1 (ENSACLG00000022123) #33	MCUB (ENSACLG00000022168)	CASP6 (ENSACLG00000022196)	CASP6 (ENSACLG00000022221)	CASP6 (ENSACLG00000022244)
P. nyererei	MODERN SPECIES	317	pdcd4a (ENSPNYG00000009383)	ENSPNYG00000009413	MXD4 (ENSPNYG00000009456)	ENSPNYG00000009476	ndufb6 (ENSPNYG00000009497)	ENSPNYG00000009502	mtap (ENSPNYG00000009514)	ENSPNYG00000009537	CXXC4 (ENSPNYG00000009577) #15	ENSPNYG00000009582	TET2 (ENSPNYG00000009595) #17	ppa2 (ENSPNYG00000009619) #18	ARHGEF38 (ENSPNYG00000009674) #19	ints12 (ENSPNYG00000009692) #20	gstcd (ENSPNYG00000009714) #21	npnta (ENSPNYG00000009737) #22	ENSPNYG00000009785	ENSPNYG00000009825	ENSPNYG00000009869	tbck (ENSPNYG00000009915) #23	aimp1a (ENSPNYG00000009958) #24	dkk2 (ENSPNYG00000009981)	papss1 (ENSPNYG00000010023) #29	sgms2a (ENSPNYG00000010057) #30	cyp2u1 (ENSPNYG00000010070) #31	ENSPNYG00000010101	lef1 (ENSPNYG00000010128) #33	MCUB (ENSPNYG00000010162)	CASP6 (ENSPNYG00000010178)	CASP6 (ENSPNYG00000010206)	CASP6 (ENSPNYG00000010228)
Burton s mouthbrooder	MODERN SPECIES	547								mtap (ENSHBUG00000014994)	ENSHBUG00000015002	CXXC4 (ENSHBUG00000015012) #15	TET2 (ENSHBUG00000015020) #17	ppa2 (ENSHBUG00000015295) #18	ARHGEF38 (ENSHBUG00000015332) #19	ints12 (ENSHBUG00000015350) #20	gstcd (ENSHBUG00000015455) #21	npnta (ENSHBUG00000015574) #22	ENSHBUG00000015592	ENSHBUG00000015611	tbck (ENSHBUG00000015730) #23	aimp1a (ENSHBUG00000015770) #24	dkk2 (ENSHBUG00000015781)	papss1 (ENSHBUG00000015808) #29	sgms2a (ENSHBUG00000015820) #30	cyp2u1 (ENSHBUG00000015834) #31	ENSHBUG00000015864	lef1 (ENSHBUG00000015891) #33	MCUB (ENSHBUG00000015902)	CASP6 (ENSHBUG00000015932)	CASP6 (ENSHBUG00000015951)	CASP6 (ENSHBUG00000015958)	pla2g12a (ENSHBUG00000015968)
Lyretail cichlid	MODERN SPECIES	301	mogs (ENSNBRG00000013193)	pdcd4a (ENSNBRG00000013163)	ENSNBRG00000013134	MXD4 (ENSNBRG00000013109)	ENSNBRG00000013086	ndufb6 (ENSNBRG00000013078)	ENSNBRG00000013068	mtap (ENSNBRG00000013040)	ENSNBRG00000013026	CXXC4 (ENSNBRG00000013019) #15	TET2 (ENSNBRG00000012999) #17	ppa2 (ENSNBRG00000012976) #18	ARHGEF38 (ENSNBRG00000012944) #19	ints12 (ENSNBRG00000012937) #20	gstcd (ENSNBRG00000012882) #21	npnta (ENSNBRG00000012852) #22	ENSNBRG00000012823	ENSNBRG00000012791	ENSNBRG00000012759	ENSNBRG00000012746	tbck (ENSNBRG00000012699) #23	aimp1a (ENSNBRG00000012670) #24	dkk2 (ENSNBRG00000012636)	papss1 (ENSNBRG00000012609) #29	sgms2a (ENSNBRG00000012579) #30	cyp2u1 (ENSNBRG00000012526) #31	ENSNBRG00000012520	lef1 (ENSNBRG00000012499) #33	MCUB (ENSNBRG00000012487)	CASP6 (ENSNBRG00000012475)	CASP6 (ENSNBRG00000012429)
Midas cichlid	MODERN SPECIES	500	pdcd4a (ENSACIG00000020573)	ENSACIG00000020554	MXD4 (ENSACIG00000020543)	ENSACIG00000020535	ndufb6 (ENSACIG00000020527)	toporsa (ENSACIG00000020517)	mtap (ENSACIG00000020505)	CDKN2B (ENSACIG00000020469)	CXXC4 (ENSACIG00000020466) #15	TET2 (ENSACIG00000020439) #17	ppa2 (ENSACIG00000020415) #18	ENSACIG00000020407	ARHGEF38 (ENSACIG00000020379) #19	ints12 (ENSACIG00000020365) #20	gstcd (ENSACIG00000020347) #21	npnta (ENSACIG00000020323) #22	ENSACIG00000020299	ENSACIG00000020266	tbck (ENSACIG00000020218) #23	aimp1a (ENSACIG00000020197) #24	dkk2 (ENSACIG00000020183)	papss1 (ENSACIG00000020154) #29	sgms2a (ENSACIG00000020126) #30	cyp2u1 (ENSACIG00000020086) #31	ENSACIG00000019845	ENSACIG00000019159	hadh (ENSACIG00000019122) #32	lef1 (ENSACIG00000019111) #33	MCUB (ENSACIG00000019079)	CASP6 (ENSACIG00000019065)	CASP6 (ENSACIG00000019047)
Percomorphaceae_C	ANCESTRAL SPECIES	3	ENSGT00390000017452	ENSGT00390000015948.a	ENSGT00950000183109.d.e.b	ENSGT00940000160120	ENSGT00950000182810.B.b.a.a	ENSGT00390000007535	ENSGT00530000064170.c	ENSGT00950000182991.B	ENSGT00940000159801.A	ENSGT00940000154108.b.a.a #15	ENSGT00940000160003 #17	ENSGT00390000017004.a.a #18	ENSGT00950000183088.a.b.b #19	ENSGT00390000005218 #20	ENSGT00390000004446 #21	ENSGT00930000150973.B.e.b #22	ENSGT00940000161510	ENSGT00940000166257.l	ENSGT00940000155191.a.b	ENSGT00940000156796.c.a.e.b	ENSGT00940000158244 #23	ENSGT00940000154950.y.a.c #24	ENSGT00940000164073.a	ENSGT00390000009613.b #29	ENSGT00940000157370.b #30	ENSGT00940000157714 #31	ENSGT00940000159984 #32	ENSGT00940000159660.j #33	ENSGT00940000158059.g	ENSGT00940000155140	ENSGT00390000008798.c
Percomorphaceae_D	ANCESTRAL SPECIES		ENSGT00390000017452	ENSGT00390000015948.a	ENSGT00950000183109.d.e.b	ENSGT00940000160120	ENSGT00950000182810.B.b.a.a	ENSGT00390000007535	ENSGT00530000064170.c	ENSGT00950000182991.B	ENSGT00940000159801.A	ENSGT00940000154108.b.a.a #15	ENSGT00940000160003 #17	ENSGT00390000017004.a.a #18	ENSGT00950000183088.a.b.b #19	ENSGT00390000005218 #20	ENSGT00390000004446 #21	ENSGT00930000150973.B.e.b #22	ENSGT00940000161510	ENSGT00940000155191.a.b	ENSGT00940000156796.c.a.e.b	ENSGT00940000158244 #23	ENSGT00940000154950.y.a.c #24	ENSGT00940000164073.a	ENSGT00390000009613.b #29	ENSGT00940000157370.b #30	ENSGT00940000157714 #31	ENSGT00940000159984 #32	ENSGT00940000159660.j #33	ENSGT00940000158059.g	ENSGT00940000155140	ENSGT00390000008798.c	ENSGT00940000157887
Carangaria	ANCESTRAL SPECIES		ENSGT00390000017452	ENSGT00390000015948.a	ENSGT00950000183109.d.e.b	ENSGT00940000160120	ENSGT00950000182810.B.b.a.a	ENSGT00390000007535	ENSGT00530000064170.c	ENSGT00950000182991.B	ENSGT00940000159801.A	ENSGT00940000154108.b.a.a #15	ENSGT00940000160003 #17	ENSGT00390000017004.a.a #18	ENSGT00950000183088.a.b.b #19	ENSGT00390000005218 #20	ENSGT00390000004446 #21	ENSGT00930000150973.B.e.b #22	ENSGT00940000155191.a.b	ENSGT00940000158244 #23	ENSGT00940000154950.y.a.c #24	ENSGT00940000164073.a	ENSGT00390000009613.b #29	ENSGT00940000157370.b #30	ENSGT00940000157714 #31	ENSGT00940000159984 #32	ENSGT00940000159660.j #33	ENSGT00940000158059.g	ENSGT00940000155140	ENSGT00390000008798.c	ENSGT00940000157887	ENSGT00950000182917.a.a.a.b	ENSGT00390000005708
Carangaria_A	ANCESTRAL SPECIES	14	ENSGT00390000017452	ENSGT00390000015948.a	ENSGT00950000183109.d.e.b	ENSGT00940000160120	ENSGT00950000182810.B.b.a.a	ENSGT00390000007535	ENSGT00530000064170.c	ENSGT00950000182991.B	ENSGT00940000159801.A	ENSGT00940000154108.b.a.a #15	ENSGT00940000160003 #17	ENSGT00390000017004.a.a #18	ENSGT00950000183088.a.b.b #19	ENSGT00390000005218 #20	ENSGT00390000004446 #21	ENSGT00930000150973.B.e.b #22	ENSGT00940000155191.a.b	ENSGT00940000158244 #23	ENSGT00940000154950.y.a.c #24	ENSGT00940000164073.a	ENSGT00390000009613.b #29	ENSGT00940000157370.b #30	ENSGT00940000157714 #31	ENSGT00940000159984 #32	ENSGT00940000159660.j #33	ENSGT00940000158059.g	ENSGT00940000155140	ENSGT00390000008798.c	ENSGT00940000157887	ENSGT00950000182917.a.a.a.b	ENSGT00390000005708
Seriola	ANCESTRAL SPECIES	18	ENSGT00390000017452	ENSGT00390000015948.a	ENSGT00950000183109.d.e.b	ENSGT00940000160120	ENSGT00950000182810.B.b.a.a	ENSGT00390000007535	ENSGT00530000064170.c	ENSGT00950000182991.B	ENSGT00940000159801.A	ENSGT00940000154108.b.a.a #15	ENSGT00940000160003 #17	ENSGT00390000017004.a.a #18	ENSGT00950000183088.a.b.b #19	ENSGT00390000005218 #20	ENSGT00390000004446 #21	ENSGT00930000150973.B.e.b #22	ENSGT00940000155191.a.b	ENSGT00940000158244 #23	ENSGT00940000154950.y.a.c #24	ENSGT00940000164073.a	ENSGT00390000009613.b #29	ENSGT00940000157370.b #30	ENSGT00940000157714 #31	ENSGT00940000159984 #32	ENSGT00940000159660.j #33	ENSGT00940000158059.g	ENSGT00940000155140	ENSGT00390000008798.c	ENSGT00940000157887	ENSGT00950000182917.a.a.a.b	ENSGT00390000005708
Greater amberjack	MODERN SPECIES	177	mogs (ENSSDUG00000002586)	pdcd4a (ENSSDUG00000002569)	ENSSDUG00000002559	MXD4 (ENSSDUG00000002525)	ENSSDUG00000002503	ndufb6 (ENSSDUG00000002492)	toporsa (ENSSDUG00000002479)	mtap (ENSSDUG00000002444)	ENSSDUG00000002474	CXXC4 (ENSSDUG00000002428) #15	TET2 (ENSSDUG00000002400) #17	ppa2 (ENSSDUG00000002358) #18	ARHGEF38 (ENSSDUG00000002327) #19	ints12 (ENSSDUG00000002296) #20	gstcd (ENSSDUG00000002259) #21	npnta (ENSSDUG00000002246) #22	ENSSDUG00000002209	tbck (ENSSDUG00000002100) #23	aimp1a (ENSSDUG00000002067) #24	dkk2 (ENSSDUG00000002053)	papss1 (ENSSDUG00000002013) #29	sgms2a (ENSSDUG00000001995) #30	cyp2u1 (ENSSDUG00000001985) #31	hadh (ENSSDUG00000001972) #32	lef1 (ENSSDUG00000001937) #33	MCUB (ENSSDUG00000001920)	casp6a (ENSSDUG00000001890)	pla2g12a (ENSSDUG00000001867)	pla2g12a (ENSSDUG00000001850)	dnajb14 (ENSSDUG00000001838)	TTC39B (ENSSDUG00000001743)
Yellowtail amberjack	MODERN SPECIES	3148	mogs (ENSSLDG00000016577)	pdcd4a (ENSSLDG00000016547)	ENSSLDG00000016518	MXD4 (ENSSLDG00000016474)	ENSSLDG00000016441	ndufb6 (ENSSLDG00000016336)	toporsa (ENSSLDG00000016304)	mtap (ENSSLDG00000016274)	ENSSLDG00000016251	CXXC4 (ENSSLDG00000016233) #15	TET2 (ENSSLDG00000016203) #17	ppa2 (ENSSLDG00000016160) #18	ARHGEF38 (ENSSLDG00000016109) #19	ints12 (ENSSLDG00000016079) #20	gstcd (ENSSLDG00000016058) #21	npnta (ENSSLDG00000015986) #22
Barramundi perch	MODERN SPECIES	108	mogs (ENSLCAG00010003611)	pdcd4a (ENSLCAG00010003617)	ENSLCAG00010003618	MXD4 (ENSLCAG00010003619)	ENSLCAG00010003620	ndufb6 (ENSLCAG00010003621)	toporsa (ENSLCAG00010003631)	mtap (ENSLCAG00010003637)	ENSLCAG00010003644	CXXC4 (ENSLCAG00010003647) #15	TET2 (ENSLCAG00010003648) #17	ppa2 (ENSLCAG00010003653) #18	ARHGEF38 (ENSLCAG00010003661) #19	ints12 (ENSLCAG00010003664) #20	gstcd (ENSLCAG00010003667) #21	npnta (ENSLCAG00010003679) #22
Pleuronectoidei	ANCESTRAL SPECIES	21	ENSGT00390000017452	ENSGT00390000015948.a	ENSGT00950000183109.d.e.b	ENSGT00940000160120	ENSGT00950000182810.B.b.a.a	ENSGT00390000007535	ENSGT00530000064170.c	ENSGT00950000182991.B	ENSGT00940000159801.A	ENSGT00940000154108.b.a.a #15	ENSGT00940000160003 #17	ENSGT00390000017004.a.a #18	ENSGT00950000183088.a.b.b #19	ENSGT00390000005218 #20	ENSGT00390000004446 #21	ENSGT00930000150973.B.e.b #22	ENSGT00940000155191.a.b	ENSGT00940000158244 #23	ENSGT00940000154950.y.a.c #24	ENSGT00940000164073.a	ENSGT00390000009613.b #29	ENSGT00940000157370.b #30	ENSGT00940000157714 #31	ENSGT00940000159984 #32	ENSGT00940000166803	ENSGT00940000159660.j #33	ENSGT00940000158059.g	ENSGT00940000155140	ENSGT00390000008798.c	ENSGT00940000157887	ENSGT00950000182917.a.a.a.b
Tongue sole	MODERN SPECIES	19	FBXO41 (ENSCSEG00000002892)	smox (ENSCSEG00000002886)	ENSCSEG00000002878	rnf24 (ENSCSEG00000002874)	sh3d19 (ENSCSEG00000002865)	rps3a (ENSCSEG00000002859)	mab21l2 (ENSCSEG00000002857)	LRBA (ENSCSEG00000002835)	ENSCSEG00000002776	CXXC4 (ENSCSEG00000002771) #15	TET2 (ENSCSEG00000002763) #17	ppa2 (ENSCSEG00000002757) #18	ARHGEF38 (ENSCSEG00000002751) #19	ints12 (ENSCSEG00000002750) #20	gstcd (ENSCSEG00000002732) #21	npnta (ENSCSEG00000002717) #22	ENSCSEG00000002704	tbck (ENSCSEG00000002672) #23	aimp1a (ENSCSEG00000002665) #24	dkk2 (ENSCSEG00000002656)	papss1 (ENSCSEG00000002644) #29	sgms2a (ENSCSEG00000002639) #30	ccdc86 (ENSCSEG00000002637)	glb1 (ENSCSEG00000002616)	acy3.2 (ENSCSEG00000002608)	cldnd1b (ENSCSEG00000002603)	tacr3l (ENSCSEG00000002593) #14	ENSCSEG00000002589	olfm2b (ENSCSEG00000002585)	MFAP4 (ENSCSEG00000002584)	TRIP10 (ENSCSEG00000002571)
Turbot	MODERN SPECIES	20	ENSSMAG00000007622	pdcd4a (ENSSMAG00000007600)	ENSSMAG00000035496	ENSSMAG00000021849	ENSSMAG00000021763	ndufb6 (ENSSMAG00000027350)	toporsa (ENSSMAG00000036294)	ENSSMAG00000007513	MTAP (ENSSMAG00000007466)	CXXC4 (ENSSMAG00000007457) #15	TET2 (ENSSMAG00000007440) #17	ppa2 (ENSSMAG00000007385) #18	ARHGEF38 (ENSSMAG00000007336) #19	ints12 (ENSSMAG00000037653) #20	gstcd (ENSSMAG00000007270) #21	npnta (ENSSMAG00000007216) #22	ENSSMAG00000007192	tbck (ENSSMAG00000007041) #23	aimp1a (ENSSMAG00000007003) #24	dkk2 (ENSSMAG00000021635)	papss1 (ENSSMAG00000037785) #29	papss1 (ENSSMAG00000006962) #29	sgms2a (ENSSMAG00000006951) #30	CYP2U1 (ENSSMAG00000006946) #31	ENSSMAG00000022426	lef1 (ENSSMAG00000006863) #33	ENSSMAG00000032699	MCUB (ENSSMAG00000025927)	ENSSMAG00000006830	PLA2G12A (ENSSMAG00000006813)	ENSSMAG00000006769
Anabantaria	ANCESTRAL SPECIES	1	ENSGT00390000017452	ENSGT00390000015948.a	ENSGT00950000183109.d.e.b	ENSGT00940000160120	ENSGT00950000182810.B.b.a.a	ENSGT00390000007535	ENSGT00530000064170.c	ENSGT00950000182991.B	ENSGT00940000159801.A	ENSGT00940000154108.b.a.a #15	ENSGT00940000160003 #17	ENSGT00390000017004.a.a #18	ENSGT00950000183088.a.b.b #19	ENSGT00390000005218 #20	ENSGT00390000004446 #21	ENSGT00930000150973.B.e.b #22	ENSGT00940000161510	ENSGT00940000155191.a.b	ENSGT00940000166257.l	ENSGT00940000156796.c.a.e.b	ENSGT00940000158244 #23	ENSGT00940000154950.y.a.c #24	ENSGT00940000164073.a	ENSGT00390000009613.b #29	ENSGT00940000157370.b #30	ENSGT00940000157714 #31	ENSGT00940000159984 #32	ENSGT00940000159660.j #33	ENSGT00940000158059.g	ENSGT00940000155140	ENSGT00390000008798.c
Zig-zag eel	MODERN SPECIES		ENSMAMG00000016228	pdcd4a (ENSMAMG00000016154)	ENSMAMG00000025965	ENSMAMG00000016130	ENSMAMG00000016106	ndufb6 (ENSMAMG00000016099)	toporsa (ENSMAMG00000027906)	mtap (ENSMAMG00000016067)	ENSMAMG00000016061	CXXC4 (ENSMAMG00000016055) #15	TET2 (ENSMAMG00000016030) #17	ppa2 (ENSMAMG00000015994) #18	ARHGEF38 (ENSMAMG00000015977) #19	ints12 (ENSMAMG00000015954) #20	gstcd (ENSMAMG00000015934) #21	npnta (ENSMAMG00000015897) #22	ENSMAMG00000026065	ENSMAMG00000015865	ENSMAMG00000015849	ENSMAMG00000015835	ENSMAMG00000015825	ENSMAMG00000015817	tbck (ENSMAMG00000015786) #23	aimp1a (ENSMAMG00000015765) #24	dkk2 (ENSMAMG00000015742)	papss1 (ENSMAMG00000015701) #29	sgms2a (ENSMAMG00000015685) #30	cyp2u1 (ENSMAMG00000015679) #31	hadh (ENSMAMG00000015669) #32	lef1 (ENSMAMG00000015643) #33	MCUB (ENSMAMG00000015635)
Anabantoidei	ANCESTRAL SPECIES		ENSGT00390000017452	ENSGT00390000015948.a	ENSGT00950000183109.d.e.b	ENSGT00940000160120	ENSGT00950000182810.B.b.a.a	ENSGT00390000007535	ENSGT00530000064170.c	ENSGT00950000182991.B	ENSGT00940000159801.A	ENSGT00940000154108.b.a.a #15	ENSGT00940000160003 #17	ENSGT00390000017004.a.a #18	ENSGT00950000183088.a.b.b #19	ENSGT00390000005218 #20	ENSGT00390000004446 #21	ENSGT00930000150973.B.e.b #22	ENSGT00940000161510	ENSGT00940000155191.a.b	ENSGT00940000156796.c.a.e.b	ENSGT00940000158244 #23	ENSGT00940000154950.y.a.c #24	ENSGT00940000164073.a	ENSGT00390000009613.b #29	ENSGT00940000157370.b #30	ENSGT00940000157714 #31	ENSGT00940000166803	ENSGT00940000159660.j #33	ENSGT00940000158059.g	ENSGT00940000155140	ENSGT00390000008798.c	ENSGT00940000157887
Siamese fighting fish	MODERN SPECIES		lef1 (ENSBSLG00000000084) #33	ENSBSLG00000000083	cyp2u1 (ENSBSLG00000000082) #31	uso1 (ENSBSLG00000000081)	g3bp2a (ENSBSLG00000000080)	pkd2 (ENSBSLG00000000079)	abcg2d (ENSBSLG00000000078)	ppm1kb (ENSBSLG00000000077)	herc3 (ENSBSLG00000000076)	ENSBSLG00000000075	FAM13A (ENSBSLG00000000074)	ENSBSLG00000000073	zgc:154142 (ENSBSLG00000000072)	ENSBSLG00000000071	elmod2 (ENSBSLG00000000070)	npnta (ENSBSLG00000000069) #22	ENSBSLG00000000068	ENSBSLG00000000067	ENSBSLG00000000066	ENSBSLG00000000065	ENSBSLG00000000064	ENSBSLG00000000063	tbck (ENSBSLG00000000062) #23	aimp1a (ENSBSLG00000000061) #24	dkk2 (ENSBSLG00000000060)	papss1 (ENSBSLG00000000059) #29	sgms2a (ENSBSLG00000000058) #30	coro2aa (ENSBSLG00000000057)	anp32b (ENSBSLG00000000055)	trmo (ENSBSLG00000000054)	ENSBSLG00000000053
Climbing perch	MODERN SPECIES		ENSATEG00000016256	pdcd4a (ENSATEG00000016227)	ENSATEG00000028239	ENSATEG00000025798	ENSATEG00000016177	ndufb6 (ENSATEG00000016167)	toporsa (ENSATEG00000016155)	mtap (ENSATEG00000016127)	ENSATEG00000026020	CXXC4 (ENSATEG00000029220) #15	TET2 (ENSATEG00000016078) #17	ppa2 (ENSATEG00000016014) #18	ARHGEF38 (ENSATEG00000015986) #19	ints12 (ENSATEG00000015968) #20	gstcd (ENSATEG00000015949) #21	npnta (ENSATEG00000015897) #22	ENSATEG00000015877	ENSATEG00000015731	ENSATEG00000025691	ENSATEG00000026770	ENSATEG00000015847	ENSATEG00000015678	ENSATEG00000015801	tbck (ENSATEG00000015402) #23	aimp1a (ENSATEG00000029193) #24	dkk2 (ENSATEG00000015345)	papss1 (ENSATEG00000015312) #29	sgms2a (ENSATEG00000015292) #30	CYP2U1 (ENSATEG00000015287) #31	ENSATEG00000029531	lef1 (ENSATEG00000015220) #33
Eupercaria	ANCESTRAL SPECIES	2	ENSGT00390000017452	ENSGT00390000015948.a	ENSGT00950000183109.d.e.b	ENSGT00940000160120	ENSGT00950000182810.B.b.a.a	ENSGT00390000007535	ENSGT00530000064170.c	ENSGT00950000182991.B	ENSGT00940000159801.A	ENSGT00940000154108.b.a.a #15	ENSGT00940000160003 #17	ENSGT00390000017004.a.a #18	ENSGT00950000183088.a.b.b #19	ENSGT00390000005218 #20	ENSGT00390000004446 #21	ENSGT00930000150973.B.e.b #22	ENSGT00940000161510	ENSGT00940000166257.l	ENSGT00940000155191.a.b	ENSGT00940000156796.c.a.e.b	ENSGT00940000158244 #23	ENSGT00940000154950.y.a.c #24	ENSGT00940000164073.a	ENSGT00390000009613.b #29	ENSGT00940000157370.b #30	ENSGT00940000157714 #31	ENSGT00940000159984 #32	ENSGT00940000159660.j #33	ENSGT00940000158059.g	ENSGT00940000155140	ENSGT00390000008798.c
Tetraodontidae	ANCESTRAL SPECIES	16	ENSGT00390000017452	ENSGT00390000015948.a	ENSGT00950000183109.d.e.b	ENSGT00940000160120	ENSGT00950000182810.B.b.a.a	ENSGT00390000007535	ENSGT00530000064170.c	ENSGT00950000182991.B	ENSGT00940000159801.A	ENSGT00940000154108.b.a.a #15	ENSGT00940000160003 #17	ENSGT00390000017004.a.a #18	ENSGT00950000183088.a.b.b #19	ENSGT00390000005218 #20	ENSGT00390000004446 #21	ENSGT00930000150973.B.e.b #22	ENSGT00940000156796.c.a.f	ENSGT00940000158244 #23	ENSGT00940000154950.y.a.c #24	ENSGT00940000164073.a	ENSGT00390000009613.b #29	ENSGT00940000157370.b #30	ENSGT00940000157714 #31	ENSGT00940000159984 #32	ENSGT00940000159660.j #33	ENSGT00940000158059.g	ENSGT00940000155140	ENSGT00390000008798.c	ENSGT00940000157887	ENSGT00950000182917.a.a.a.b	ENSGT00390000005708
Fugu	MODERN SPECIES	8	mogs (ENSTRUG00000021233)	pdcd4a (ENSTRUG00000002085)	ENSTRUG00000027358	MXD4 (ENSTRUG00000003046)	ENSTRUG00000003472	ndufb6 (ENSTRUG00000003741)	toporsa (ENSTRUG00000030740)	mtap (ENSTRUG00000003933)	ENSTRUG00000029442	CXXC4 (ENSTRUG00000004403) #15	TET2 (ENSTRUG00000025759) #17	ppa2 (ENSTRUG00000004694) #18	ARHGEF38 (ENSTRUG00000021868) #19	ints12 (ENSTRUG00000005424) #20	gstcd (ENSTRUG00000005592) #21	npnta (ENSTRUG00000005796) #22	ALOXE3 (ENSTRUG00000006230)	tbck (ENSTRUG00000007131) #23	aimp1a (ENSTRUG00000007708) #24	dkk2 (ENSTRUG00000020351)	papss1 (ENSTRUG00000007964) #29	sgms2a (ENSTRUG00000008227) #30	cyp2u1 (ENSTRUG00000008392) #31	hadh (ENSTRUG00000025695) #32	lef1 (ENSTRUG00000008652) #33	ENSTRUG00000029025	MCUB (ENSTRUG00000020031)	casp6a (ENSTRUG00000009005)	pla2g12a (ENSTRUG00000025166)	dnajb14 (ENSTRUG00000009175)	TTC39B (ENSTRUG00000009393)
Tetraodon	MODERN SPECIES	10	mogs (ENSTNIG00000018045)	pdcd4a (ENSTNIG00000018044)	ENSTNIG00000018043	MXD4 (ENSTNIG00000018042)	ENSTNIG00000018041	ndufb6 (ENSTNIG00000018040)	toporsa (ENSTNIG00000018039)	mtap (ENSTNIG00000018038)	CDKN2B (ENSTNIG00000018037)	CXXC4 (ENSTNIG00000018036) #15	ENSTNIG00000018035 #17	ppa2 (ENSTNIG00000018034) #18	ARHGEF38 (ENSTNIG00000018033) #19	ints12 (ENSTNIG00000018032) #20	gstcd (ENSTNIG00000018031) #21	npnta (ENSTNIG00000018030) #22	ALOXE3 (ENSTNIG00000018029)	tbck (ENSTNIG00000018028) #23	aimp1a (ENSTNIG00000018027) #24	dkk2 (ENSTNIG00000018026)	papss1 (ENSTNIG00000018025) #29	cyp2u1 (ENSTNIG00000018024) #31	hadh (ENSTNIG00000018023) #32	lef1 (ENSTNIG00000018022) #33	MCUB (ENSTNIG00000018021)	casp6a (ENSTNIG00000018020)	pla2g12a (ENSTNIG00000018019)	dnajb14 (ENSTNIG00000018018)	TTC39B (ENSTNIG00000018017)	snapc3 (ENSTNIG00000018016)	psip1a (ENSTNIG00000018015)
Eupecaria_A	ANCESTRAL SPECIES	3	ENSGT00390000017452	ENSGT00390000015948.a	ENSGT00950000183109.d.e.b	ENSGT00940000160120	ENSGT00950000182810.B.b.a.a	ENSGT00390000007535	ENSGT00530000064170.c	ENSGT00950000182991.B	ENSGT00940000159801.A	ENSGT00940000154108.b.a.a #15	ENSGT00940000160003 #17	ENSGT00390000017004.a.a #18	ENSGT00950000183088.a.b.b #19	ENSGT00390000005218 #20	ENSGT00390000004446 #21	ENSGT00930000150973.B.e.b #22	ENSGT00940000161510.bb.a	ENSGT00940000156796.c.a.e.b.c.a	ENSGT00940000161510.bb.b.a	ENSGT00940000156796.c.a.e.b.c.b	ENSGT00940000158244 #23	ENSGT00940000154950.y.a.c #24	ENSGT00940000164073.a	ENSGT00390000009613.b #29	ENSGT00940000157370.b #30	ENSGT00940000157714 #31	ENSGT00940000159984 #32	ENSGT00940000159660.j #33	ENSGT00940000158059.g	ENSGT00940000155140	ENSGT00390000008798.c
Ballan wrasse	MODERN SPECIES	307	mogs (ENSLBEG00000020718)	pdcd4a (ENSLBEG00000020785)	ENSLBEG00000020848	MXD4 (ENSLBEG00000020882)	ENSLBEG00000020914	ndufb6 (ENSLBEG00000020991)	toporsa (ENSLBEG00000021161)	mtap (ENSLBEG00000021177)	ENSLBEG00000021222	CXXC4 (ENSLBEG00000021255) #15	TET2 (ENSLBEG00000021272) #17	ppa2 (ENSLBEG00000021311) #18	ARHGEF38 (ENSLBEG00000021380) #19	ints12 (ENSLBEG00000021442) #20	gstcd (ENSLBEG00000021496) #21	npnta (ENSLBEG00000021582) #22	ENSLBEG00000021643	ENSLBEG00000021701	ENSLBEG00000021746
Eupecaria_B	ANCESTRAL SPECIES	1	ENSGT00390000017452	ENSGT00390000015948.a	ENSGT00950000183109.d.e.b	ENSGT00940000160120	ENSGT00950000182810.B.b.a.a	ENSGT00390000007535	ENSGT00530000064170.c	ENSGT00950000182991.B	ENSGT00940000159801.A	ENSGT00940000154108.b.a.a #15	ENSGT00940000160003 #17	ENSGT00390000017004.a.a #18	ENSGT00950000183088.a.b.b #19	ENSGT00390000005218 #20	ENSGT00390000004446 #21	ENSGT00930000150973.B.e.b #22	ENSGT00940000161510.bb.a	ENSGT00940000158244 #23	ENSGT00940000154950.y.a.c #24	ENSGT00940000164073.a	ENSGT00390000009613.b #29	ENSGT00940000157370.b #30	ENSGT00940000157714 #31	ENSGT00940000159984 #32	ENSGT00940000159660.j #33	ENSGT00940000158059.g	ENSGT00940000155140	ENSGT00390000008798.c	ENSGT00940000157887	ENSGT00950000182917.a.a.a.b	ENSGT00390000005708
Eupecaria_C	ANCESTRAL SPECIES	14	ENSGT00390000017452	ENSGT00390000015948.a	ENSGT00950000183109.d.e.b	ENSGT00940000160120	ENSGT00950000182810.B.b.a.a	ENSGT00390000007535	ENSGT00530000064170.c	ENSGT00950000182991.B	ENSGT00940000159801.A	ENSGT00940000154108.b.a.a #15	ENSGT00940000160003 #17	ENSGT00390000017004.a.a #18	ENSGT00950000183088.a.b.b #19	ENSGT00390000005218 #20	ENSGT00390000004446 #21	ENSGT00930000150973.B.e.b #22	ENSGT00940000161510.bb.a	ENSGT00940000156796.c.a.e.b.c.b	ENSGT00940000158244 #23	ENSGT00940000154950.y.a.c #24	ENSGT00940000164073.a	ENSGT00390000009613.b #29	ENSGT00940000157370.b #30	ENSGT00940000157714 #31	ENSGT00940000159984 #32	ENSGT00940000159660.j #33	ENSGT00940000158059.g	ENSGT00940000155140	ENSGT00390000008798.c	ENSGT00940000157887	ENSGT00950000182917.a.a.a.b
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	13	ENSGT00390000017452	ENSGT00390000015948.a	ENSGT00950000183109.d.e.b	ENSGT00940000160120	ENSGT00950000182810.B.b.a.a	ENSGT00390000007535	ENSGT00530000064170.c	ENSGT00950000182991.B	ENSGT00940000159801.A	ENSGT00940000154108.b.a.a #15	ENSGT00940000160003 #17	ENSGT00390000017004.a.a #18	ENSGT00950000183088.a.b.b #19	ENSGT00390000005218 #20	ENSGT00390000004446 #21	ENSGT00930000150973.B.e.b #22	ENSGT00940000161510.bb.a	ENSGT00940000156796.c.a.e.b.c.b	ENSGT00940000158244 #23	ENSGT00940000154950.y.a.c #24	ENSGT00940000164073.a	ENSGT00390000009613.b #29	ENSGT00940000157370.b #30	ENSGT00940000157714 #31	ENSGT00940000159984 #32	ENSGT00940000159660.j #33	ENSGT00940000158059.g	ENSGT00940000155140	ENSGT00390000008798.c	ENSGT00940000157887	ENSGT00950000182917.a.a.a.b
European seabass	MODERN SPECIES	20	ENSDLAG00005007927	ENSDLAG00005008012	ENSDLAG00005008019	pdcd4a (ENSDLAG00005008050)	ENSDLAG00005008245	ENSDLAG00005008270	toporsa (ENSDLAG00005008307)	mtap (ENSDLAG00005008314)	ENSDLAG00005030819	CXXC4 (ENSDLAG00005029513) #15	TET2 (ENSDLAG00005008342) #17	ppa2 (ENSDLAG00005008369) #18	ARHGEF38 (ENSDLAG00005008659) #19	ints12 (ENSDLAG00005008683) #20	gstcd (ENSDLAG00005008704) #21	npnta (ENSDLAG00005008770) #22	ENSDLAG00005008986	tbck (ENSDLAG00005009196) #23	aimp1a (ENSDLAG00005009303) #24	SGMS2 (ENSDLAG00005009658) #30	dkk2 (ENSDLAG00005009325)	papss1 (ENSDLAG00005009340) #29	cyp2u1 (ENSDLAG00005009666) #31	HADH (ENSDLAG00005009678) #32	lef1 (ENSDLAG00005009739) #33	MCUB (ENSDLAG00005009854)	ENSDLAG00005009860	PLA2G12A (ENSDLAG00005009873)	ENSDLAG00005009883	TTC39B (ENSDLAG00005009905)	SNAPC3 (ENSDLAG00005010205)
Large yellow croaker	MODERN SPECIES	481	MXD4 (ENSLCRG00005005511)	ENSLCRG00005005512	ndufb6 (ENSLCRG00005005513)	ENSLCRG00005005514	ndufb6 (ENSLCRG00005005518)	MTAP (ENSLCRG00005005520)	toporsa (ENSLCRG00005005521)	ENSLCRG00005005522	ENSLCRG00005005525	CXXC4 (ENSLCRG00005005531) #15	TET2 (ENSLCRG00005005534) #17	ppa2 (ENSLCRG00005005537) #18	ARHGEF38 (ENSLCRG00005005538) #19	ints12 (ENSLCRG00005005541) #20	gstcd (ENSLCRG00005005544) #21	npnta (ENSLCRG00005005549) #22	ENSLCRG00005005565	ENSLCRG00005005621	ENSLCRG00005005622	tbck (ENSLCRG00005005651) #23	aimp1a (ENSLCRG00005005691) #24	dkk2 (ENSLCRG00005005694)	papss1 (ENSLCRG00005005706) #29	sgms2a (ENSLCRG00005006482) #30	ENSLCRG00005006485 #31	ENSLCRG00005006487	sgms2a (ENSLCRG00005006489) #30	cyp2u1 (ENSLCRG00005006492) #31	hadh (ENSLCRG00005006494) #32	lef1 (ENSLCRG00005006498) #33	ENSLCRG00005006513
Gilthead seabream	MODERN SPECIES		pdcd4a (ENSSAUG00010018727)	ENSSAUG00010018725	MXD4 (ENSSAUG00010018724)	ENSSAUG00010018719	NDUFB6 (ENSSAUG00010018717)	toporsa (ENSSAUG00010018715)	mtap (ENSSAUG00010018714)	ENSSAUG00010018712	ENSSAUG00010018710	CXXC4 (ENSSAUG00010018707) #15	TET2 (ENSSAUG00010018703) #17	ppa2 (ENSSAUG00010018692) #18	ARHGEF38 (ENSSAUG00010018687) #19	ints12 (ENSSAUG00010018684) #20	gstcd (ENSSAUG00010018641) #21	npnta (ENSSAUG00010018549) #22	ENSSAUG00010018544	ENSSAUG00010018540	ENSSAUG00010018531	tbck (ENSSAUG00010018488) #23	aimp1a (ENSSAUG00010018483) #24	dkk2 (ENSSAUG00010018482)	papss1 (ENSSAUG00010017671) #29	sgms2a (ENSSAUG00010017667) #30	cyp2u1 (ENSSAUG00010017666) #31	hadh (ENSSAUG00010017665) #32	lef1 (ENSSAUG00010017607) #33	MCUB (ENSSAUG00010017605)	CASP6 (ENSSAUG00010017602)	CASP6 (ENSSAUG00010017589)	PLA2G12A (ENSSAUG00010017581)
Perciformes	ANCESTRAL SPECIES	2	ENSGT00390000017452	ENSGT00390000015948.a	ENSGT00950000183109.d.e.b	ENSGT00940000160120	ENSGT00950000182810.B.b.a.a	ENSGT00390000007535	ENSGT00530000064170.c	ENSGT00950000182991.B	ENSGT00940000159801.A	ENSGT00940000154108.b.a.a #15	ENSGT00940000160003 #17	ENSGT00390000017004.a.a #18	ENSGT00950000183088.a.b.b #19	ENSGT00390000005218 #20	ENSGT00390000004446 #21	ENSGT00930000150973.B.e.b #22	ENSGT00940000161510.bb.a	ENSGT00940000158244 #23	ENSGT00940000154950.y.a.c #24	ENSGT00940000164073.a	ENSGT00390000009613.b #29	ENSGT00940000157370.b #30	ENSGT00940000157714 #31	ENSGT00940000159984 #32	ENSGT00940000159660.j #33	ENSGT00940000158059.g	ENSGT00940000155140	ENSGT00390000008798.c	ENSGT00940000157887	ENSGT00950000182917.a.a.a.b	ENSGT00390000005708
Cottioidei	ANCESTRAL SPECIES	3	ENSGT00390000017452	ENSGT00390000015948.a	ENSGT00950000183109.d.e.b	ENSGT00940000160120	ENSGT00950000182810.B.b.a.a	ENSGT00390000007535	ENSGT00530000064170.c	ENSGT00950000182991.B	ENSGT00940000159801.A	ENSGT00940000154108.b.a.a #15	ENSGT00940000160003 #17	ENSGT00390000017004.a.a #18	ENSGT00950000183088.a.b.b #19	ENSGT00390000005218 #20	ENSGT00390000004446 #21	ENSGT00930000150973.B.e.b #22	ENSGT00940000161510.bb.b.a	ENSGT00940000158244 #23	ENSGT00940000154950.y.a.c #24	ENSGT00940000164073.a	ENSGT00390000009613.b #29	ENSGT00940000157370.b #30	ENSGT00940000157714 #31	ENSGT00940000166803	ENSGT00940000159660.j #33	ENSGT00940000158059.g	ENSGT00940000155140	ENSGT00390000008798.c	ENSGT00940000157887	ENSGT00950000182917.a.a.a.b	ENSGT00390000005708
Stickleback	MODERN SPECIES	4	pdcd4a (ENSGACG00000017601)	ENSGACG00000017596	MXD4 (ENSGACG00000017587)	ENSGACG00000017579	ndufb6 (ENSGACG00000017573)	toporsa (ENSGACG00000017571)	mtap (ENSGACG00000017558)	ENSGACG00000017556	CXXC4 (ENSGACG00000017555) #15	ENSGACG00000017550 #17	ppa2 (ENSGACG00000017548) #18	ENSGACG00000017545 #19	ARHGEF38 (ENSGACG00000017541) #19	ints12 (ENSGACG00000017536) #20	gstcd (ENSGACG00000017529) #21	npnta (ENSGACG00000017519) #22	tbck (ENSGACG00000017502) #23	aimp1a (ENSGACG00000017501) #24	dkk2 (ENSGACG00000017496)	papss1 (ENSGACG00000017494) #29	sgms2a (ENSGACG00000017492) #30	cyp2u1 (ENSGACG00000017462) #31	lef1 (ENSGACG00000017458) #33	MCUB (ENSGACG00000017450)	casp6a (ENSGACG00000017443)	pla2g12a (ENSGACG00000017439)	dnajb14 (ENSGACG00000017429)	TTC39B (ENSGACG00000017412)	snapc3 (ENSGACG00000017405)	PSIP1 (ENSGACG00000017401)	bnc2 (ENSGACG00000017398)
Lumpfish	MODERN SPECIES		mogs (ENSCLMG00005010414)	pdcd4a (ENSCLMG00005010420)	ENSCLMG00005011090	MXD4 (ENSCLMG00005011094)	ENSCLMG00005011096	ndufb6 (ENSCLMG00005011099)	toporsa (ENSCLMG00005011102)	mtap (ENSCLMG00005011119)	ENSCLMG00005011120	CXXC4 (ENSCLMG00005011121) #15	TET2 (ENSCLMG00005011122) #17	ppa2 (ENSCLMG00005011126) #18	ARHGEF38 (ENSCLMG00005011127) #19	ints12 (ENSCLMG00005011129) #20	gstcd (ENSCLMG00005011131) #21	npnta (ENSCLMG00005011142) #22	ENSCLMG00005011149	tbck (ENSCLMG00005011152) #23	aimp1a (ENSCLMG00005011257) #24	dkk2 (ENSCLMG00005011258)	papss1 (ENSCLMG00005011263) #29	sgms2a (ENSCLMG00005012059) #30	cyp2u1 (ENSCLMG00005012060) #31	ENSCLMG00005012061	lef1 (ENSCLMG00005012062) #33	MCUB (ENSCLMG00005012063)	casp6a (ENSCLMG00005012064)	pla2g12a (ENSCLMG00005012065)	dnajb14 (ENSCLMG00005012067)	TTC39B (ENSCLMG00005012068)	snapc3 (ENSCLMG00005012069)
Perciformes_a	ANCESTRAL SPECIES		ENSGT00390000017452	ENSGT00390000015948.a	ENSGT00950000183109.d.e.b	ENSGT00940000160120	ENSGT00950000182810.B.b.a.a	ENSGT00390000007535	ENSGT00530000064170.c	ENSGT00950000182991.B	ENSGT00940000159801.A	ENSGT00940000154108.b.a.a #15	ENSGT00940000160003 #17	ENSGT00390000017004.a.a #18	ENSGT00950000183088.a.b.b #19	ENSGT00390000005218 #20	ENSGT00390000004446 #21	ENSGT00930000150973.B.e.b #22	ENSGT00940000161510.bb.a	ENSGT00940000158244 #23	ENSGT00940000154950.y.a.c #24	ENSGT00940000164073.a	ENSGT00390000009613.b #29	ENSGT00940000157370.b #30	ENSGT00940000157714 #31	ENSGT00940000159984 #32	ENSGT00940000159660.j #33	ENSGT00940000158059.g	ENSGT00940000155140	ENSGT00390000008798.c	ENSGT00940000157887	ENSGT00950000182917.a.a.a.b	ENSGT00390000005708
Pike perch	MODERN SPECIES	45	mogs (ENSSLUG00000022415)	pdcd4a (ENSSLUG00000022461)	ENSSLUG00000022880	MXD4 (ENSSLUG00000022882)	ENSSLUG00000001552	ndufb6 (ENSSLUG00000001563)	toporsa (ENSSLUG00000001568)	mtap (ENSSLUG00000001591)	ENSSLUG00000001607	CXXC4 (ENSSLUG00000001615) #15	TET2 (ENSSLUG00000001662) #17	ppa2 (ENSSLUG00000001711) #18	ARHGEF38 (ENSSLUG00000001753) #19	ints12 (ENSSLUG00000001767) #20	gstcd (ENSSLUG00000001775) #21	npnta (ENSSLUG00000001853) #22	tbck (ENSSLUG00000002020) #23	aimp1a (ENSSLUG00000002129) #24	dkk2 (ENSSLUG00000002133)	ENSSLUG00000002143	papss1 (ENSSLUG00000002199) #29	sgms2a (ENSSLUG00000002502) #30	cyp2u1 (ENSSLUG00000002524) #31	hadh (ENSSLUG00000002585) #32	lef1 (ENSSLUG00000002593) #33	MCUB (ENSSLUG00000002599)	casp6a (ENSSLUG00000002604)	pla2g12a (ENSSLUG00000002613)	dnajb14 (ENSSLUG00000002624)	TTC39B (ENSSLUG00000002628)	snapc3 (ENSSLUG00000002640)
Channel bull blenny	MODERN SPECIES		ENSCGOG00000005950	VAV1 (ENSCGOG00000006018)	UBL5 (ENSCGOG00000009925)	pin1 (ENSCGOG00000009932)	ENSCGOG00000009938	ENSCGOG00000009962	ndufb6 (ENSCGOG00000009974)	toporsa (ENSCGOG00000009987)	mtap (ENSCGOG00000009991)	ENSCGOG00000010013	ENSCGOG00000010014	TET2 (ENSCGOG00000010016) #17	ARHGEF38 (ENSCGOG00000010026) #19	ints12 (ENSCGOG00000010030) #20	gstcd (ENSCGOG00000010034) #21	npnta (ENSCGOG00000010047) #22	ENSCGOG00000010061	ENSCGOG00000010068	ENSCGOG00000010181	tbck (ENSCGOG00000010212) #23	aimp1a (ENSCGOG00000011329) #24	dkk2 (ENSCGOG00000011331)	papss1 (ENSCGOG00000011408) #29	sgms2a (ENSCGOG00000013284) #30	cyp2u1 (ENSCGOG00000013287) #31	ENSCGOG00000013353	lef1 (ENSCGOG00000013599) #33	MCUB (ENSCGOG00000013615)	casp6a (ENSCGOG00000013620)	pla2g12a (ENSCGOG00000013622)	dnajb14 (ENSCGOG00000013623)
Osteoglossiformes	ANCESTRAL SPECIES	108				ENSGT00940000160120.f	ENSGT00950000182810.B.b.a.a	ENSGT00390000006684	ENSGT00390000007535	ENSGT00950000182991.B	ENSGT00940000159801.A.a	ENSGT00940000154108.b.a.a #15	ENSGT00940000160003.g #17	ENSGT00390000017004.a.a #18	ENSGT00950000183088.a.b.b #19	ENSGT00390000005218.k #20	ENSGT00390000004446 #21	ENSGT00930000150973.B.e.b #22	ENSGT00940000158244 #23	ENSGT00940000154950.y.a #24	ENSGT00940000164073.b.b	ENSGT00390000009613.b #29	ENSGT00940000157370.b #30	ENSGT00940000159984 #32	ENSGT00940000159660.h #33	ENSGT00940000158059	ENSGT00390000008798.c	ENSGT00940000157887.o	ENSGT00950000182917.a.a.a.b	ENSGT00390000005708	ENSGT00940000154706.rb.b	ENSGT00940000167699	ENSGT00390000005844.a.b
Asian bonytongue	MODERN SPECIES	7	mogs (ENSSFOG00015018970)	pdcd4a (ENSSFOG00015018958)	ENSSFOG00015032850	MXD4 (ENSSFOG00015018937)	ENSSFOG00015018921	TMEM215 (ENSSFOG00015018914)	ndufb6 (ENSSFOG00015018909)	mtap (ENSSFOG00015033003)	ENSSFOG00015032015	CXXC4 (ENSSFOG00015018857) #15	TET2 (ENSSFOG00015018838) #17	ppa2 (ENSSFOG00015018820) #18	ARHGEF38 (ENSSFOG00015018810) #19	ints12 (ENSSFOG00015018796) #20	gstcd (ENSSFOG00015018781) #21	npnta (ENSSFOG00015018747) #22	tbck (ENSSFOG00015018647) #23	aimp1a (ENSSFOG00015018626) #24	ENSSFOG00015018618	papss1 (ENSSFOG00015025025) #29	sgms2a (ENSSFOG00015018552) #30	hadh (ENSSFOG00015018506) #32	lef1 (ENSSFOG00015018486) #33	ENSSFOG00015024817	pla2g12a (ENSSFOG00015027653)	dnajb14 (ENSSFOG00015018429)	TTC39B (ENSSFOG00015018388)	snapc3 (ENSSFOG00015018372)	PSIP1 (ENSSFOG00015018274)	bnc2 (ENSSFOG00015025047)	CNTLN (ENSSFOG00015031410)
P. kingsleyae	MODERN SPECIES	6	mogs (ENSPKIG00000011420)	pdcd4a (ENSPKIG00000011507)	ENSPKIG00000011613	ENSPKIG00000011632	ENSPKIG00000011653	TMEM215 (ENSPKIG00000011679)	ndufb6 (ENSPKIG00000011695)	mtap (ENSPKIG00000011717)	ENSPKIG00000011762	CXXC4 (ENSPKIG00000011861) #15	TET2 (ENSPKIG00000011904) #17	ppa2 (ENSPKIG00000011957) #18	ARHGEF38 (ENSPKIG00000012009) #19	ints12 (ENSPKIG00000012046) #20	gstcd (ENSPKIG00000012085) #21	npnta (ENSPKIG00000012155) #22	tbck (ENSPKIG00000012287) #23	ENSPKIG00000012482	aimp1a (ENSPKIG00000012660) #24	ENSPKIG00000012697	papss1 (ENSPKIG00000012723) #29	sgms2a (ENSPKIG00000012756) #30	hadh (ENSPKIG00000012813) #32	lef1 (ENSPKIG00000012891) #33	ENSPKIG00000012909	dnajb14 (ENSPKIG00000012948)	pla2g12a (ENSPKIG00000012993)	snapc3 (ENSPKIG00000013017)	PSIP1 (ENSPKIG00000013066)	bnc2 (ENSPKIG00000013129)	CNTLN (ENSPKIG00000013170)
Osteoglossocephalai	ANCESTRAL SPECIES																	ENSGT00930000150973.B.f #22
Clupeocephala	ANCESTRAL SPECIES	26	ENSGT00950000183033.a.b.a	ENSGT01030000234528.A.a.a	ENSGT00570000079168.b.b.b	ENSGT00940000156589	ENSGT00940000160382	ENSGT00940000157878	ENSGT00940000156171.g	ENSGT00390000017043	ENSGT00940000178396	ENSGT00940000157587.k	ENSGT00940000158403	ENSGT00940000156801.h	ENSGT00940000156733	ENSGT00940000162501	ENSGT00940000158660	ENSGT00930000150973.B.f #22	ENSGT00390000015089	ENSGT00940000154391.a.a	ENSGT00390000009908	ENSGT00940000156063.k	ENSGT00940000154978	ENSGT00940000160339	ENSGT01100000263512.a.a.b.b	ENSGT00940000155201.c	ENSGT00940000158472	ENSGT00940000168784	ENSGT00940000159559	ENSGT00940000159333	ENSGT00940000154895.b	ENSGT00940000154778.d	ENSGT01050000244827.C.c.b
Otomorpha	ANCESTRAL SPECIES	90	ENSGT00950000183033.a.b.a	ENSGT01030000234528.A.a.a	ENSGT00570000079168.b.b.b	ENSGT00940000156589	ENSGT00940000160382	ENSGT00940000157878	ENSGT00940000156171.g	ENSGT00390000017043	ENSGT00390000016264	ENSGT00940000157587.k	ENSGT00940000158403	ENSGT00940000156801.h	ENSGT00940000156733	ENSGT00940000162501	ENSGT00940000158660	ENSGT00930000150973.B.f #22	ENSGT00390000015089	ENSGT00940000154391.a.a	ENSGT00390000009908	ENSGT00940000167497	ENSGT00940000156063.k	ENSGT00940000154978	ENSGT00940000160339	ENSGT01100000263512.a.a.b.b	ENSGT00940000155201.c	ENSGT00940000158472	ENSGT00940000159559	ENSGT00940000159333	ENSGT00940000154895.b	ENSGT01050000244827.C.c.b	ENSGT00940000154778.d
Otophysi	ANCESTRAL SPECIES	79	ENSGT01030000234528.A.a.a	ENSGT00570000079168.b.b.b	ENSGT00940000156589	ENSGT00940000160382	ENSGT00940000157878	ENSGT00940000156171.g	ENSGT00390000017043	ENSGT00390000016264	ENSGT00940000157587.k	ENSGT00940000156733	ENSGT00940000158403	ENSGT00940000156801.h	ENSGT00940000162501	ENSGT00940000181639	ENSGT00940000158660	ENSGT00930000150973.B.f #22	ENSGT00390000015089.db	ENSGT00940000154391.a.a	ENSGT00390000009908	ENSGT00940000167497	ENSGT00940000156063.k	ENSGT00940000154978	ENSGT00940000160339	ENSGT01100000263512.a.a.b.b	ENSGT00940000155201.c	ENSGT00940000158472	ENSGT00940000159559	ENSGT00940000159333	ENSGT00940000154895.b	ENSGT00390000000973.a.b	ENSGT00510000046908.a.b
Characiphysae	ANCESTRAL SPECIES	9	ENSGT00570000079168.b.b.b	ENSGT00940000156589	ENSGT00940000160382	ENSGT00940000157878	ENSGT00940000156171.g	ENSGT00390000017043	ENSGT00940000178396	ENSGT00940000157587.k	ENSGT00940000157297	ENSGT00940000158403	ENSGT00940000156801.h	ENSGT00390000011517.a.a.c.a.a.a	ENSGT00940000162501	ENSGT00940000181639	ENSGT00940000158660	ENSGT00930000150973.B.f #22	ENSGT00390000015089.db	ENSGT00940000154391.a.a	ENSGT00390000009908	ENSGT00940000167497	ENSGT00940000156063.k	ENSGT00940000154978	ENSGT00940000160339	ENSGT00940000158472	ENSGT00940000159559.e	ENSGT00940000159333	ENSGT00940000154895.b	ENSGT00390000000973.a.b	ENSGT00510000046908.a.b	ENSGT00740000117197	ENSGT00510000046787.e.a
Characiphysae_b	ANCESTRAL SPECIES	76	ENSGT00940000156589	ENSGT00940000160382	ENSGT00940000157878	ENSGT00940000156171.g	ENSGT00390000017043	ENSGT00940000178396	ENSGT00940000157587.k	ENSGT00940000156733	ENSGT00940000157297	ENSGT00940000158403	ENSGT00940000156801.h	ENSGT00390000011517.a.a.c.a.a.a	ENSGT00940000162501	ENSGT00940000181639	ENSGT00940000158660	ENSGT00930000150973.B.f #22	ENSGT00390000015089.db	ENSGT00940000154391.a.a	ENSGT00390000009908	ENSGT00940000167497	ENSGT00940000156063.k	ENSGT00940000154978	ENSGT00940000160339	ENSGT00940000158472	ENSGT00940000159559.e	ENSGT00940000159333	ENSGT00940000154895.b	ENSGT00390000000973.a.b	ENSGT00510000046908.a.b	ENSGT00740000117197	ENSGT00510000046787.e.a
Characoidei	ANCESTRAL SPECIES	83	ENSGT00940000156589	ENSGT00940000160382	ENSGT00940000157878	ENSGT00940000156171.g	ENSGT00390000017043	ENSGT00940000178396	ENSGT00940000157587.k	ENSGT00940000156733	ENSGT00940000157297	ENSGT00940000158403	ENSGT00940000156801.h	ENSGT00390000011517.a.a.c.a.a.a	ENSGT00940000162501	ENSGT00940000181639	ENSGT00940000158660	ENSGT00930000150973.B.f #22	ENSGT00390000015089.db	ENSGT00940000154391.a.a	ENSGT00390000009908	ENSGT00940000167497	ENSGT00940000156063.k	ENSGT00940000154978	ENSGT00940000160339	ENSGT00940000158472	ENSGT00940000159559.e	ENSGT00940000159333	ENSGT00940000154895.b	ENSGT00390000000973.a.b	ENSGT00510000046908.a.b	ENSGT00740000117197	ENSGT00510000046787.e.a
Red-bellied piranha	MODERN SPECIES	75			npnta (ENSPNAG00000019459) #22	ENSPNAG00000019372	gstcd (ENSPNAG00000019351) #21	ENSPNAG00000019334	sgms2a (ENSPNAG00000019292) #30	cyp2u1 (ENSPNAG00000019273) #31	hadh (ENSPNAG00000019256) #32	lef1 (ENSPNAG00000019234) #33	ENSPNAG00000019163	CASP6 (ENSPNAG00000019149)	frem3 (ENSPNAG00000019126)	ENSPNAG00000019064	hhip (ENSPNAG00000019049)	ENSPNAG00000018976 #22	ABCE1 (ENSPNAG00000018952)	smad1 (ENSPNAG00000018876)	mmaa (ENSPNAG00000018835)	zgc:152968 (ENSPNAG00000018796)	lsm6 (ENSPNAG00000018779)	ENSPNAG00000018757	pou4f2 (ENSPNAG00000018723)	ednraa (ENSPNAG00000018703)	tmem184c (ENSPNAG00000018682)	prmt9 (ENSPNAG00000018653)	arhgap10 (ENSPNAG00000018633)	nr3c2 (ENSPNAG00000018585)	dclk2a (ENSPNAG00000018538)	FAM193A (ENSPNAG00000018360)	ENSPNAG00000018343
Mexicana tetra	MODERN SPECIES	17	ENSAMXG00000040109	ENSAMXG00000031819	ENSAMXG00000005620	rnf150a (ENSAMXG00000005659)	znf330 (ENSAMXG00000037400)	ENSAMXG00000040943	INPP4B (ENSAMXG00000005675)	ENSAMXG00000038896	smarca5 (ENSAMXG00000005709)	USP38 (ENSAMXG00000005773)	gab1 (ENSAMXG00000005791)	ENSAMXG00000031973	ENSAMXG00000005803	frem3 (ENSAMXG00000005822)	hhip (ENSAMXG00000032857)	ENSAMXG00000036070 #22	ABCE1 (ENSAMXG00000041181)	smad1 (ENSAMXG00000016040)	mmaa (ENSAMXG00000043168)	zgc:152968 (ENSAMXG00000019691)	ZNF827 (ENSAMXG00000019655)	lsm6 (ENSAMXG00000038738)	pou4f2 (ENSAMXG00000032001)	prmt9 (ENSAMXG00000019547)	arhgap10 (ENSAMXG00000040905)	nr3c2 (ENSAMXG00000025608)	dclk2a (ENSAMXG00000031323)	FAM193A (ENSAMXG00000019508)	ENSAMXG00000017148	scpp1 (ENSAMXG00000035298)	sparcl1 (ENSAMXG00000017100)
Channel catfish	MODERN SPECIES	22	TBC1D9 (ENSIPUG00000005781)	Rnf150 (ENSIPUG00000005739)	Znf330 (ENSIPUG00000005653)	ENSIPUG00000005636	inpp4b (ENSIPUG00000005415)	SMARCA5 (ENSIPUG00000005229)	ENSIPUG00000005208	USP38 (ENSIPUG00000005133)	gab1 (ENSIPUG00000005006)	ENSIPUG00000004977	ENSIPUG00000004960	ENSIPUG00000004940	ENSIPUG00000004921	frem3 (ENSIPUG00000004849)	hhip (ENSIPUG00000004822)	ENSIPUG00000004809 #22	ABCE1-2 (ENSIPUG00000004734)	smad1 (ENSIPUG00000004686)	MMAA (ENSIPUG00000004655)	zgc:152968 (ENSIPUG00000004633)	znf827 (ENSIPUG00000004564)	ENSIPUG00000004547	ENSIPUG00000004523	lsm6 (ENSIPUG00000004508)	pou4f2 (ENSIPUG00000004499)	ednra (ENSIPUG00000004480)	tmem184c (ENSIPUG00000004456)	prmt9 (ENSIPUG00000004445)	arhgap10 (ENSIPUG00000004373)	ENSIPUG00000004355	nr3c2 (ENSIPUG00000004309)
Cyprinoidei	ANCESTRAL SPECIES	22	ENSGT00940000156365	ENSGT00940000153665.b.a.a	ENSGT00940000154490.a.b	ENSGT00940000156459	ENSGT00690000101915.i.b	ENSGT00940000161074.b	ENSGT00950000183159.b.c.a	ENSGT00940000156711.k.b	ENSGT00390000015293	ENSGT00940000163575	ENSGT00940000158403	ENSGT00940000156801.h	ENSGT00940000162501	ENSGT00940000181639	ENSGT00940000158660	ENSGT00930000150973.B.f #22	ENSGT00940000154391.a.a	ENSGT00390000009908	ENSGT00940000167497	ENSGT00940000156063.k	ENSGT00940000154978	ENSGT00940000160339	ENSGT01100000263512.a.a.b.b	ENSGT00940000155201.c	ENSGT00940000158472	ENSGT00940000159559	ENSGT00940000159333	ENSGT00940000154895.b.d	ENSGT00390000000973.a.b	ENSGT00510000046908.a.b	ENSGT00740000117197
Cyprininae	ANCESTRAL SPECIES	164	ENSGT00940000156459.m	ENSGT00690000101915.i.b.a	ENSGT00940000161074.b.g	ENSGT00950000183159.b.c.a	ENSGT00940000158108.h.a	ENSGT00390000015293.g	ENSGT00960000188499	ENSGT00390000016051.a.a	ENSGT00390000006051.u	ENSGT00940000164706.a.b	ENSGT01030000235355	ENSGT00940000158403.f	ENSGT00940000156801.h.c	ENSGT00940000162501.f	ENSGT00940000158660.c	ENSGT00930000150973.B.f #22	ENSGT00940000154391.a.a.b	ENSGT00390000009908.f	ENSGT00940000167497	ENSGT00940000156063.k.f	ENSGT00940000154978.db	ENSGT00940000160339.a	ENSGT01100000263512.a.a.b.b.b	ENSGT00940000155201.c.b	ENSGT00940000158472.c	ENSGT00940000159559.c	ENSGT00940000159333.m	ENSGT00940000154895.b.d.a	ENSGT00390000000973.a.b.a	ENSGT00510000046908.a.b.c	ENSGT00740000117197.a
Cyprininae_a	ANCESTRAL SPECIES	157	ENSGT00940000156459.m	ENSGT00690000101915.i.b.a	ENSGT00940000161074.b.g	ENSGT00950000183159.b.c.a	ENSGT00940000158108.h.a	ENSGT00390000015293.g	ENSGT00960000188499	ENSGT00390000016051.a.a	ENSGT00390000006051.u	ENSGT00940000164706.a.b	ENSGT01030000235355.g	ENSGT00940000158403.f	ENSGT00940000156801.h.c	ENSGT00940000162501.f	ENSGT00940000158660.c	ENSGT00930000150973.B.f #22	ENSGT00940000154391.a.a.b	ENSGT00390000009908.f	ENSGT00940000167497	ENSGT00940000156063.k.f	ENSGT00940000154978.db	ENSGT00940000160339.a	ENSGT01100000263512.a.a.b.b.b	ENSGT00940000155201.c.b	ENSGT00940000158472.c	ENSGT00940000159559.c	ENSGT00940000159333.m	ENSGT00940000154895.b.d.a	ENSGT00390000000973.a.b.a	ENSGT00510000046908.a.b.c	ENSGT00740000117197.a
Common carp reference	MODERN SPECIES	27	ENSCCRG00000021260	ENSCCRG00000066054	ENSCCRG00000077328	ENSCCRG00000061810	ENSCCRG00000081400	ENSCCRG00000058337	ENSCCRG00000082194	ENSCCRG00000064959	ENSCCRG00000065723	ENSCCRG00000038047	ENSCCRG00000038049	USP38 (ENSCCRG00000013303)	gab1 (ENSCCRG00000019378)	frem3 (ENSCCRG00000028893)	hhip (ENSCCRG00000027366)	ENSCCRG00000082636 #22	ENSCCRG00000027324	smad1 (ENSCCRG00000027267)	ENSCCRG00000027251	mmaa (ENSCCRG00000032670)	zgc:152968 (ENSCCRG00000027221)	ZNF827 (ENSCCRG00000081976)	lsm6 (ENSCCRG00000069344)	pou4f2 (ENSCCRG00000056758)	ednraa (ENSCCRG00000056916)	tmem184c (ENSCCRG00000013098)	prmt9 (ENSCCRG00000028542)	arhgap10 (ENSCCRG00000069265)	nr3c2 (ENSCCRG00000003237)	dclk2a (ENSCCRG00000016187)	ENSCCRG00000036265
Goldfish	MODERN SPECIES	18	lmo7b (ENSCARG00000023205)	ENSCARG00000023268	klf12a (ENSCARG00000023176)	pibf1 (ENSCARG00000023114)	ENSCARG00000023089	gtf2f2a (ENSCARG00000023034)	tpt1 (ENSCARG00000023006)	ENSCARG00000022994	ENSCARG00000022988	ENSCARG00000022978	ENSCARG00000022976	USP38 (ENSCARG00000022939)	gab1 (ENSCARG00000022869)	frem3 (ENSCARG00000022812)	hhip (ENSCARG00000022169)	ENSCARG00000022129 #22	smad1 (ENSCARG00000022107)	mmaa (ENSCARG00000022095)	zgc:152968 (ENSCARG00000022034)	ZNF827 (ENSCARG00000022014)	lrata (ENSCARG00000022009)	map9 (ENSCARG00000021999)	gucy1a1 (ENSCARG00000021972)	gucy1b1 (ENSCARG00000021964)	fabp2 (ENSCARG00000021956)	USP53 (ENSCARG00000021907)	myoz2b (ENSCARG00000021887)	ENSCARG00000021835	ENSCARG00000021825	pdcd4a (ENSCARG00000020525)	MXD4 (ENSCARG00000020471)
Zebrafish	MODERN SPECIES		KLF5 (ENSDARG00000015506)	pibf1 (ENSDARG00000013006)	gpalpp1 (ENSDARG00000058287)	gtf2f2a (ENSDARG00000069910)	ENSDARG00000109513	tpt1 (ENSDARG00000092693)	ENSDARG00000095934	zgc:172122 (ENSDARG00000079191)	ENSDARG00000105033	sc:d189 (ENSDARG00000102858)	USP38 (ENSDARG00000075798)	gab1 (ENSDARG00000037018)	frem3 (ENSDARG00000074677)	ENSDARG00000094485	hhip (ENSDARG00000060397)	ENSDARG00000094648 #22	smad1 (ENSDARG00000027199)	ENSDARG00000115856	mmaa (ENSDARG00000060383)	zgc:152968 (ENSDARG00000037002)	ZNF827 (ENSDARG00000076171)	ENSDARG00000113986	lsm6 (ENSDARG00000036995)	pou4f2 (ENSDARG00000069737)	ENSDARG00000095555	ednraa (ENSDARG00000011876)	tmem184c (ENSDARG00000078789)	prmt9 (ENSDARG00000036755)	arhgap10 (ENSDARG00000078326)	nr3c2 (ENSDARG00000102082)	dclk2a (ENSDARG00000034093)
Euteleosteomorpha	ANCESTRAL SPECIES	38	ENSGT00950000183033.a.b.a	ENSGT00950000183033.a.a.c.b	ENSGT00940000156416.c	ENSGT01030000234528.A.a.a	ENSGT00570000079168.b.b.b	ENSGT00940000156589	ENSGT00940000160382	ENSGT00940000157878	ENSGT00940000156171.g	ENSGT00390000017043	ENSGT00390000016264	ENSGT00940000157587.k	ENSGT00940000156801.h	ENSGT00940000158403	ENSGT00940000158660	ENSGT00930000150973.B.f #22	ENSGT00390000015089	ENSGT00940000154391.a.a	ENSGT00390000009908	ENSGT00940000156063.l	ENSGT00940000156063.k	ENSGT00940000154978	ENSGT00940000160339	ENSGT01100000263512.a.a.b.b	ENSGT00940000155201.c	ENSGT00940000158472	ENSGT00940000168784	ENSGT00940000159559	ENSGT00940000159333	ENSGT00940000154895.b	ENSGT00940000154778.d
Protacanthopterygii	ANCESTRAL SPECIES	41	ENSGT01050000244827.C.c.b	ENSGT00940000154778.c.a	ENSGT00940000154895.b	ENSGT00940000159333	ENSGT00940000159559	ENSGT00940000158472	ENSGT00940000155201.c	ENSGT01100000263512.a.a.b.b	ENSGT00940000160339	ENSGT00940000154978	ENSGT00940000156063.k	ENSGT00390000009908	ENSGT00940000154391.a.a	ENSGT00390000015089	ENSGT00940000158660	ENSGT00930000150973.B.f #22	ENSGT00940000162501.d	ENSGT00940000156733	ENSGT00940000158403	ENSGT00940000156801.h	ENSGT00940000157587.k	ENSGT01010000230089	ENSGT00940000178396	ENSGT00390000017043	ENSGT00940000156171.g	ENSGT00940000157878	ENSGT00940000160382	ENSGT00940000156589	ENSGT00570000079168.b.b.b	ENSGT01030000234528.A.a.a	ENSGT00940000156416.c
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	342	ENSGT00940000154895.b.g.b.a	ENSGT00940000159333.l.b	ENSGT00940000159559	ENSGT00940000158472	ENSGT00940000155201.c	ENSGT01100000263512.a.a.b.b	ENSGT00940000160339	ENSGT00940000154978.fb	ENSGT00940000156063.k.d.b	ENSGT00940000154978.gb	ENSGT00940000156063.k.c	ENSGT00390000009908	ENSGT00940000154391.a.a	ENSGT00390000015089.m	ENSGT00940000158660.e.a	ENSGT00930000150973.B.f.a #22	ENSGT00940000162501.d	ENSGT00940000156733.f	ENSGT00940000157297.m	ENSGT00940000158403.d	ENSGT00940000156801.h.e	ENSGT00940000157587.k.d
Huchen	MODERN SPECIES	2211															hhip (ENSHHUG00000033574)	ENSHHUG00000033586 #22	frem3 (ENSHHUG00000033589)
Salmoninae_a	ANCESTRAL SPECIES	88										ENSGT00940000154978.fb	ENSGT00940000156063.k.c	ENSGT00390000009908	ENSGT00940000154391.a.a	ENSGT00390000015089.m	ENSGT00940000158660.e.a.b	ENSGT00930000150973.B.f.a #22	ENSGT00940000162501.d	ENSGT00940000156733.f	ENSGT00940000156733.e	ENSGT00940000158403.c	ENSGT00940000156801.h.f	ENSGT00940000157587.k.d	ENSGT00940000156801.h.e	ENSGT00940000157587.k.c	ENSGT00940000165852.f	ENSGT00940000178396.d.a	ENSGT00390000017043.b.b	ENSGT00940000156171.g	ENSGT00940000157878	ENSGT00940000160382	ENSGT00940000156589
Salmo	ANCESTRAL SPECIES	86	ENSGT00390000018433.i.b	ENSGT01050000244827.C.c.b.c	ENSGT00940000154895.b.g.a.a.b	ENSGT00940000159333.l.b	ENSGT00940000159559.l	ENSGT00940000158472.h	ENSGT00940000155201.c.h	ENSGT01100000263512.a.a.b.b.e	ENSGT00940000160339.h	ENSGT00940000154978.fb	ENSGT00940000156063.k.c	ENSGT00390000009908.j	ENSGT00940000154391.a.a	ENSGT00390000015089.m.c	ENSGT00940000158660.e.a.b	ENSGT00930000150973.B.f.a #22	ENSGT00940000162501.d.b	ENSGT00940000156733.f	ENSGT00940000158403.d	ENSGT00940000156801.h.e	ENSGT00940000157587.k.c.a	ENSGT00940000165852.f.b	ENSGT00940000178396.d.b	ENSGT00390000017043.b.b	ENSGT00940000156171.g.e	ENSGT00940000157878.h	ENSGT00940000160382.g	ENSGT00940000156589.o.b	ENSGT00570000079168.b.b.b.w.b	ENSGT01030000234528.A.a.a.j	ENSGT00950000183033.a.b.a.kc.a.b
Atlantic salmon	MODERN SPECIES	23	LRBA (ENSSSAG00000010768)	ENSSSAG00000005000	nr3c2 (ENSSSAG00000087524)	arhgap10 (ENSSSAG00000095725)	prmt9 (ENSSSAG00000075757)	tmem184c (ENSSSAG00000075720)	ednraa (ENSSSAG00000075851)	po4f2 (ENSSSAG00000075716)	LSM6 (ENSSSAG00000075714)	ENSSSAG00000099769	ZNF827 (ENSSSAG00000108938)	mmaa (ENSSSAG00000074476)	smad1 (ENSSSAG00000074479)	abce1 (ENSSSAG00000002121)	ENSSSAG00000075542	ENSSSAG00000104815 #22	ENSSSAG00000089087	ENSSSAG00000002457	ENSSSAG00000003700	ENSSSAG00000003706	ENSSSAG00000099673	ENSSSAG00000084059	ENSSSAG00000111141	zn330 (ENSSSAG00000000376)	ENSSSAG00000121513	TBC1D9 (ENSSSAG00000003961)	ucp1 (ENSSSAG00000083875)	ENSSSAG00000083598	elmod2 (ENSSSAG00000077042)	zgc:154142 (ENSSSAG00000002088)	FAM13A (ENSSSAG00000076970)
Salmoninae	ANCESTRAL SPECIES	1744															ENSGT00940000158660.f	ENSGT00930000150973.B.f.b #22
Huchen	MODERN SPECIES	1489															ENSHHUG00000032293	ENSHHUG00000032302 #22	frem3 (ENSHHUG00000032317)	SMARCA5 (ENSHHUG00000032503)	USP38 (ENSHHUG00000032649)	gab1 (ENSHHUG00000032659)
Northern pike	MODERN SPECIES	24	LRBA (ENSELUG00000013955)	mab21l2 (ENSELUG00000013864)	ENSELUG00000014023	nr3c2 (ENSELUG00000014053)	arhgap10 (ENSELUG00000014084)	prmt9 (ENSELUG00000000514)	tmem184c (ENSELUG00000014151)	ednraa (ENSELUG00000014189)	pou4f2 (ENSELUG00000014223)	LSM6 (ENSELUG00000014301)	ZNF827 (ENSELUG00000014353)	mmaa (ENSELUG00000014425)	smad1 (ENSELUG00000014371)	abce1 (ENSELUG00000014503)	hhip (ENSELUG00000014550)	ENSELUG00000026074 #22	frem3 (ENSELUG00000014604)	SMARCA5 (ENSELUG00000014653)	USP38 (ENSELUG00000014698)	gab1 (ENSELUG00000014794)	ENSELUG00000014860	ENSELUG00000014886	ENSELUG00000014904	znf330 (ENSELUG00000014942)	rnf150a (ENSELUG00000014972)	TBC1D9 (ENSELUG00000015042)	ucp1 (ENSELUG00000015079)	elmod2 (ENSELUG00000015113)	ENSELUG00000015121	zgc:154142 (ENSELUG00000015172)	FAM13A (ENSELUG00000015312)
Acanthomorphata	ANCESTRAL SPECIES	36	ENSGT01030000234528.A.a.a	ENSGT00570000079168.b.b.b	ENSGT00940000156589	ENSGT00940000160382	ENSGT00940000157878	ENSGT00940000156171.g	ENSGT00390000017043	ENSGT00490000044733	ENSGT00940000157587.k	ENSGT00940000156801.h	ENSGT00940000158403	ENSGT00940000157297	ENSGT00940000156733	ENSGT00940000162501	ENSGT00940000158660	ENSGT00930000150973.B.f #22	ENSGT00390000015089	ENSGT00940000178415	ENSGT00940000159922.a.b	ENSGT00940000154391.a.a	ENSGT00390000009908	ENSGT00940000156063.l	ENSGT00940000156063.k	ENSGT00940000154978	ENSGT00940000160339	ENSGT01100000263512.a.a.b.b	ENSGT00940000155201.c	ENSGT00940000158472	ENSGT00940000168784	ENSGT00940000159559	ENSGT00940000159333
Euacanthomorphacea	ANCESTRAL SPECIES	3	ENSGT01030000234528.A.a.a	ENSGT00570000079168.b.b.b	ENSGT00940000156589	ENSGT00940000160382	ENSGT00940000157878	ENSGT00940000156171.g	ENSGT00390000017043	ENSGT00490000044733	ENSGT00940000157587.k	ENSGT00940000156801.h	ENSGT00940000158403	ENSGT00940000157297	ENSGT00940000156733	ENSGT00940000162501	ENSGT00940000158660	ENSGT00930000150973.B.f #22	ENSGT00940000154737.d	ENSGT00950000182907.a.b.a	ENSGT00940000155598.b	ENSGT00940000155951.b	ENSGT00940000155951.a	ENSGT00940000166707	ENSGT00940000166038	ENSGT00940000156633.d.b	ENSGT00940000175002	ENSGT00390000004396.h	ENSGT00940000156171.h	ENSGT00940000157587.l	ENSGT00950000183040.A.b.h	ENSGT00940000155128.a.b.a.a	ENSGT00940000154986.a
Percomorphaceae	ANCESTRAL SPECIES	17	ENSGT00570000079168.b.b.b	ENSGT00940000156589	ENSGT00940000160382	ENSGT00940000157878	ENSGT00940000154950.y.a.d #24	ENSGT00940000156171.g	ENSGT00390000017043	ENSGT00490000044733	ENSGT00940000157587.k	ENSGT00940000156801.h	ENSGT00940000158403	ENSGT00940000157297	ENSGT00940000156733	ENSGT00940000162501	ENSGT00940000158660	ENSGT00930000150973.B.f #22	ENSGT00940000154391.a.a	ENSGT00390000009908	ENSGT00940000156063.l	ENSGT00940000156063.k	ENSGT00940000154978	ENSGT00940000160339	ENSGT01100000263512.a.a.b.b	ENSGT00940000155201.c	ENSGT00940000158472	ENSGT00940000168784	ENSGT00940000159559	ENSGT00940000159333	ENSGT00940000154895.b	ENSGT01050000244827.C.c.b	ENSGT00940000154778.d
Percomorphaceae_B	ANCESTRAL SPECIES		ENSGT01030000234528.A.a.a	ENSGT00570000079168.b.b.b	ENSGT00940000156589	ENSGT00940000160382	ENSGT00940000157878	ENSGT00940000154950.y.a.d #24	ENSGT00940000156171.g	ENSGT00390000017043	ENSGT00490000044733	ENSGT00940000157587.k	ENSGT00940000156801.h	ENSGT00940000158403	ENSGT00940000157297	ENSGT00940000162501	ENSGT00940000158660	ENSGT00930000150973.B.f #22	ENSGT00940000154391.a.a	ENSGT00390000009908	ENSGT00940000156063.l	ENSGT00940000156063.k	ENSGT00940000154978	ENSGT00940000160339	ENSGT01100000263512.a.a.b.b	ENSGT00940000155201.c	ENSGT00940000158472	ENSGT00940000159559	ENSGT00940000159333.j	ENSGT00940000154895.b	ENSGT01050000244827.C.c.b	ENSGT00940000154778.d	ENSGT00940000178664
Percomorphaceae_C	ANCESTRAL SPECIES	3	ENSGT01030000234528.A.a.a	ENSGT00570000079168.b.b.b	ENSGT00940000156589	ENSGT00940000160382	ENSGT00940000157878	ENSGT00940000154950.y.a.d #24	ENSGT00940000156171.g	ENSGT00390000017043	ENSGT00490000044733	ENSGT00940000157587.k	ENSGT00940000156801.h	ENSGT00940000158403	ENSGT00940000157297	ENSGT00940000162501	ENSGT00940000158660	ENSGT00930000150973.B.f #22	ENSGT00940000154391.a.a	ENSGT00390000009908	ENSGT00940000156063.k	ENSGT00940000154978	ENSGT00940000160339	ENSGT01100000263512.a.a.b.b	ENSGT00940000155201.c	ENSGT00940000158472	ENSGT00940000159559	ENSGT00940000159333.j	ENSGT00940000154895.b	ENSGT01050000244827.C.c.b	ENSGT00940000154778.d	ENSGT00940000178664	ENSGT00390000018433
Percomorphaceae_D	ANCESTRAL SPECIES		ENSGT01030000234528.A.a.a	ENSGT00570000079168.b.b.b	ENSGT00940000156589	ENSGT00940000160382	ENSGT00940000157878	ENSGT00940000154950.y.a.d #24	ENSGT00940000156171.g	ENSGT00390000017043	ENSGT00490000044733	ENSGT00940000157587.k	ENSGT00940000156801.h	ENSGT00940000158403	ENSGT00940000157297	ENSGT00940000162501	ENSGT00940000158660	ENSGT00930000150973.B.f #22	ENSGT00940000154391.a.a	ENSGT00390000009908	ENSGT00940000156063.k	ENSGT00940000154978	ENSGT00940000160339	ENSGT01100000263512.a.a.b.b	ENSGT00940000155201.c	ENSGT00940000158472	ENSGT00940000159559	ENSGT00940000159333.j	ENSGT00940000154895.b	ENSGT01050000244827.C.c.b	ENSGT00940000154778.d	ENSGT00390000018433	ENSGT00940000155694.g
Carangaria	ANCESTRAL SPECIES		ENSGT01030000234528.A.a.a	ENSGT00570000079168.b.b.b	ENSGT00940000156589	ENSGT00940000160382	ENSGT00940000157878	ENSGT00940000154950.y.a.d #24	ENSGT00940000156171.g	ENSGT00390000017043	ENSGT00490000044733	ENSGT00940000157587.k	ENSGT00940000156801.h	ENSGT00940000158403	ENSGT00940000157297	ENSGT00940000162501	ENSGT00940000158660	ENSGT00930000150973.B.f #22	ENSGT00940000154391.a.a	ENSGT00390000009908	ENSGT00940000156063.k	ENSGT00940000154978	ENSGT00940000160339	ENSGT01100000263512.a.a.b.b	ENSGT00940000155201.c	ENSGT00940000158472	ENSGT00940000159559	ENSGT00940000159333.j	ENSGT00940000154895.b	ENSGT01050000244827.C.c.b	ENSGT00940000154778.d	ENSGT00390000018433	ENSGT00940000155694.g
Carangaria_A	ANCESTRAL SPECIES	14	ENSGT00570000079168.b.b.b	ENSGT00940000156589	ENSGT00940000160382	ENSGT00940000157878	ENSGT00940000154950.y.a.d #24	ENSGT00940000156171.g	ENSGT00390000017043	ENSGT00490000044733	ENSGT00390000016264.b	ENSGT00940000157587.k	ENSGT00940000156801.h	ENSGT00940000158403	ENSGT00940000157297	ENSGT00940000162501	ENSGT00940000158660	ENSGT00930000150973.B.f #22	ENSGT00940000154391.a.a	ENSGT00390000009908	ENSGT00940000156063.k	ENSGT00940000154978	ENSGT00940000160339	ENSGT01100000263512.a.a.b.b	ENSGT00940000155201.c	ENSGT00940000158472	ENSGT00940000159559	ENSGT00940000159333.j	ENSGT00940000154895.b	ENSGT01050000244827.C.c.b	ENSGT00940000154778.d	ENSGT00390000018433	ENSGT00940000155694.g
Seriola	ANCESTRAL SPECIES	18	ENSGT01030000234528.A.a.a	ENSGT00570000079168.b.b.b	ENSGT00940000156589	ENSGT00940000160382	ENSGT00940000157878	ENSGT00940000154950.y.a.d #24	ENSGT00940000156171.g	ENSGT00390000017043	ENSGT00490000044733	ENSGT00940000157587.k	ENSGT00940000156801.h	ENSGT00940000158403	ENSGT00940000157297	ENSGT00940000162501	ENSGT00940000158660	ENSGT00930000150973.B.f #22	ENSGT00940000154391.a.a	ENSGT00390000009908	ENSGT00940000156063.k	ENSGT00940000154978	ENSGT00940000160339	ENSGT01100000263512.a.a.b.b	ENSGT00940000155201.c	ENSGT00940000158472	ENSGT00940000159559	ENSGT00940000159333.j	ENSGT00940000154895.b	ENSGT01050000244827.C.c.b	ENSGT00940000154778.d	ENSGT00390000018433	ENSGT00940000155694.g
Greater amberjack	MODERN SPECIES	13								znf330 (ENSSDUG00000020983)	ENSSDUG00000020975	INPP4B (ENSSDUG00000020852)	gab1 (ENSSDUG00000020752)	USP38 (ENSSDUG00000020726)	smarca5 (ENSSDUG00000020690)	frem3 (ENSSDUG00000020596)	hhip (ENSSDUG00000020557)	ENSSDUG00000020543 #22	smad1 (ENSSDUG00000020517)	mmaa (ENSSDUG00000020496)	ZNF827 (ENSSDUG00000020473)	lsm6 (ENSSDUG00000020459)	pou4f2 (ENSSDUG00000020438)	ednraa (ENSSDUG00000020409)	tmem184c (ENSSDUG00000020385)	prmt9 (ENSSDUG00000020371)	arhgap10 (ENSSDUG00000020345)	nr3c2 (ENSSDUG00000020314)	ENSSDUG00000020252	mab21l2 (ENSSDUG00000020226)	LRBA (ENSSDUG00000020003)	rps3a (ENSSDUG00000019960)	sh3d19 (ENSSDUG00000019944)
Yellowtail amberjack	MODERN SPECIES	2669	zgc:154142 (ENSSLDG00000025047)	ENSSLDG00000025062	elmod2 (ENSSLDG00000025065)	ucp1 (ENSSLDG00000025071)	TBC1D9 (ENSSLDG00000025079)	ENSSLDG00000025104 #24	rnf150a (ENSSLDG00000025109)	znf330 (ENSSLDG00000025111)	ENSSLDG00000025119	INPP4B (ENSSLDG00000025130)	gab1 (ENSSLDG00000025161)	USP38 (ENSSLDG00000025183)	smarca5 (ENSSLDG00000025190)	frem3 (ENSSLDG00000025203)	hhip (ENSSLDG00000025216)	ENSSLDG00000025227 #22	smad1 (ENSSLDG00000025231)	mmaa (ENSSLDG00000025241)
Pleuronectoidei	ANCESTRAL SPECIES	21	ENSGT01030000234528.A.a.a	ENSGT00570000079168.b.b.b	ENSGT00940000156589	ENSGT00940000160382	ENSGT00940000157878	ENSGT00940000154950.y.a.d #24	ENSGT00940000156171.g	ENSGT00390000017043	ENSGT00490000044733	ENSGT00940000157587.k	ENSGT00940000156801.h	ENSGT00940000158403	ENSGT00940000157297	ENSGT00940000162501	ENSGT00940000158660	ENSGT00930000150973.B.f #22	ENSGT00940000154391.a.a	ENSGT00390000009908	ENSGT00940000156063.k	ENSGT00940000154978	ENSGT00940000160339	ENSGT01100000263512.a.a.b.b	ENSGT00940000155201.c	ENSGT00940000158472	ENSGT00940000159559	ENSGT00940000159333.j	ENSGT00940000154895.b	ENSGT01050000244827.C.c.b	ENSGT00940000154778.d	ENSGT00390000018433	ENSGT00940000155694.g
Turbot	MODERN SPECIES	20	zgc:154142 (ENSSMAG00000005567)	ENSSMAG00000005541	elmod2 (ENSSMAG00000036172)	ucp1 (ENSSMAG00000005526)	TBC1D9 (ENSSMAG00000005232)	ENSSMAG00000005210 #24	rnf150a (ENSSMAG00000005200)	znf330 (ENSSMAG00000005173)	ENSSMAG00000032235	INPP4B (ENSSMAG00000004999)	ENSSMAG00000004882	ENSSMAG00000004860	ENSSMAG00000004801	frem3 (ENSSMAG00000004744)	ENSSMAG00000004670	ENSSMAG00000026272 #22	SMAD1 (ENSSMAG00000004644)	mmaa (ENSSMAG00000004632)	ZNF827 (ENSSMAG00000004583)	lsm6 (ENSSMAG00000004550)	pou4f2 (ENSSMAG00000004538)	ednraa (ENSSMAG00000004502)	tmem184c (ENSSMAG00000004486)	prmt9 (ENSSMAG00000004407)	arhgap10 (ENSSMAG00000004366)	nr3c2 (ENSSMAG00000004328)	ENSSMAG00000003950	mab21l2 (ENSSMAG00000003930)	LRBA (ENSSMAG00000003797)	RPS3A (ENSSMAG00000033565)	ENSSMAG00000021889
Ovalentaria	ANCESTRAL SPECIES		ENSGT01030000234528.A.a.a	ENSGT00570000079168.b.b.b	ENSGT00940000156589	ENSGT00940000160382	ENSGT00940000157878	ENSGT00940000154950.y.a.d #24	ENSGT00940000156171.g	ENSGT00390000017043	ENSGT00490000044733	ENSGT00940000157587.k	ENSGT00940000156801.h	ENSGT00940000158403	ENSGT00940000157297	ENSGT00940000162501	ENSGT00940000158660	ENSGT00930000150973.B.f #22	ENSGT00940000154391.a.a	ENSGT00390000009908	ENSGT00940000156063.k	ENSGT00940000154978	ENSGT00940000160339	ENSGT01100000263512.a.a.b.b	ENSGT00940000155201.c	ENSGT00940000158472	ENSGT00940000159559	ENSGT00940000159333.j	ENSGT00940000154895.b	ENSGT01050000244827.C.c.b	ENSGT00940000154778.d	ENSGT00390000018433	ENSGT00940000155694.g
Atherinomorphae	ANCESTRAL SPECIES																	ENSGT00930000150973.B.f #22
Cyprinodontiformes	ANCESTRAL SPECIES																	ENSGT00930000150973.B.f #22
Cyprinodontoidei	ANCESTRAL SPECIES																	ENSGT00930000150973.B.f #22
Poeciliinae	ANCESTRAL SPECIES																	ENSGT00930000150973.B.f #22
Poecilia	ANCESTRAL SPECIES																	ENSGT00930000150973.B.f #22
NAME_6	ANCESTRAL SPECIES																	ENSGT00930000150973.B.f #22
Sailfin molly	MODERN SPECIES	1020			sgms2b (ENSPLAG00000015735) #30	ENSPLAG00000015731	ENSPLAG00000015721	ENSPLAG00000015715	ENSPLAG00000015708	ENSPLAG00000015697	ENSPLAG00000015686	cyp17a2 (ENSPLAG00000015678)	ENSPLAG00000015654	ENSPLAG00000015634	prelid1b (ENSPLAG00000015214)	ENSPLAG00000015190	ENSPLAG00000015184	ENSPLAG00000015172 #22
Ovalentaria_B	ANCESTRAL SPECIES	4	ENSGT00570000079168.b.b.b	ENSGT00940000182021	ENSGT00940000156589	ENSGT00940000160382	ENSGT00940000157878	ENSGT00940000154950.y.a.d #24	ENSGT00940000156171.g	ENSGT00390000017043	ENSGT00490000044733	ENSGT00940000157587.k	ENSGT00940000156801.h	ENSGT00940000158403	ENSGT00940000157297	ENSGT00940000162501	ENSGT00940000158660	ENSGT00930000150973.B.f #22	ENSGT00940000154391.a.a	ENSGT00390000009908	ENSGT00940000156063.k	ENSGT00940000154978	ENSGT00940000160339	ENSGT01100000263512.a.a.b.b	ENSGT00940000155201.c	ENSGT00940000158472	ENSGT00940000159559	ENSGT00940000159333.j	ENSGT00940000154895.b	ENSGT01050000244827.C.c.b	ENSGT00940000154778.d	ENSGT00390000018433	ENSGT00940000155694.g
Cichlidae	ANCESTRAL SPECIES	3	ENSGT00570000079168.b.b.b	ENSGT00940000182021	ENSGT00940000156589	ENSGT00940000160382	ENSGT00940000157878	ENSGT00940000154950.y.a.d #24	ENSGT00940000156171.g	ENSGT00390000017043	ENSGT00490000044733	ENSGT00940000157587.k	ENSGT00940000156801.h	ENSGT00940000158403	ENSGT00940000157297	ENSGT00940000162501	ENSGT00940000158660	ENSGT00930000150973.B.f #22	ENSGT00940000154391.a.a	ENSGT00390000009908	ENSGT00940000156063.k	ENSGT00940000154978	ENSGT00940000160339	ENSGT01100000263512.a.a.b.b	ENSGT00940000155201.c	ENSGT00940000158472	ENSGT00940000159559	ENSGT00940000159333.j	ENSGT00940000154895.b	ENSGT01050000244827.C.c.b	ENSGT00940000154778.d	ENSGT00390000018433	ENSGT00940000155694.g
Pseudocrenilabrinae	ANCESTRAL SPECIES	3	ENSGT01030000234528.A.a.a	ENSGT00570000079168.b.b.b	ENSGT00940000156589	ENSGT00940000160382	ENSGT00940000157878	ENSGT00940000154950.y.a.d #24	ENSGT00940000156171.g	ENSGT00390000017043	ENSGT00490000044733	ENSGT00940000157587.k	ENSGT00940000156801.h	ENSGT00940000158403	ENSGT00940000157297	ENSGT00940000162501	ENSGT00940000158660	ENSGT00930000150973.B.f #22	ENSGT00940000154391.a.a	ENSGT00390000009908	ENSGT00940000156063.k	ENSGT00940000154978	ENSGT00940000160339	ENSGT01100000263512.a.a.b.b	ENSGT00940000155201.c	ENSGT00940000158472	ENSGT00940000159559	ENSGT00940000159333.j	ENSGT00940000154895.b	ENSGT01050000244827.C.c.b	ENSGT00940000154778.d	ENSGT00390000018433	ENSGT00940000155694.g
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	5	ENSGT01030000234528.A.a.a	ENSGT00570000079168.b.b.b	ENSGT00940000156589	ENSGT00940000160382	ENSGT00940000157878	ENSGT00940000154950.y.a.d #24	ENSGT00940000156171.g	ENSGT00390000017043	ENSGT00490000044733	ENSGT00940000157587.k	ENSGT00940000156801.h	ENSGT00940000158403	ENSGT00940000157297	ENSGT00940000162501	ENSGT00940000158660	ENSGT00930000150973.B.f #22	ENSGT00940000154391.a.a	ENSGT00390000009908	ENSGT00940000156063.k	ENSGT00940000154978	ENSGT00940000160339	ENSGT01100000263512.a.a.b.b	ENSGT00940000155201.c	ENSGT00940000158472	ENSGT00940000159559	ENSGT00940000159333.j	ENSGT00940000154895.b	ENSGT00940000154778.d	ENSGT01050000244827.C.c.b	ENSGT00390000018433	ENSGT00940000155694.g
Haplochromini	ANCESTRAL SPECIES	3	ENSGT01030000234528.A.a.a	ENSGT00570000079168.b.b.b	ENSGT00940000156589	ENSGT00940000160382	ENSGT00940000157878	ENSGT00940000154950.y.a.d #24	ENSGT00940000156171.g	ENSGT00390000017043	ENSGT00490000044733	ENSGT00940000157587.k	ENSGT00940000156801.h	ENSGT00940000158403	ENSGT00940000157297	ENSGT00940000162501	ENSGT00940000158660	ENSGT00930000150973.B.f #22	ENSGT00940000154391.a.a	ENSGT00390000009908	ENSGT00940000156063.k	ENSGT00940000154978	ENSGT00940000160339	ENSGT01100000263512.a.a.b.b	ENSGT00940000155201.c	ENSGT00940000158472	ENSGT00940000159559	ENSGT00940000159333.j	ENSGT00940000154895.b	ENSGT01050000244827.C.c.b	ENSGT00940000154778.d	ENSGT00390000018433	ENSGT00940000155694.g
Haplochromini_A	ANCESTRAL SPECIES	2	ENSGT01030000234528.A.a.a	ENSGT00570000079168.b.b.b	ENSGT00940000156589	ENSGT00940000160382	ENSGT00940000157878	ENSGT00940000154950.y.a.d #24	ENSGT00940000156171.g	ENSGT00390000017043	ENSGT00490000044733	ENSGT00940000157587.k	ENSGT00940000156801.h	ENSGT00940000158403	ENSGT00940000157297	ENSGT00940000162501	ENSGT00940000158660	ENSGT00930000150973.B.f #22	ENSGT00940000154391.a.a	ENSGT00390000009908	ENSGT00940000156063.k	ENSGT00940000154978	ENSGT00940000160339	ENSGT01100000263512.a.a.b.b	ENSGT00940000155201.c	ENSGT00940000158472	ENSGT00940000159559	ENSGT00940000159333.j	ENSGT00940000154895.b	ENSGT00940000154778.d	ENSGT01050000244827.C.c.b	ENSGT00390000018433	ENSGT00940000155694.g
Haplochromini_B	ANCESTRAL SPECIES	8	ENSGT00570000079168.b.b.b	ENSGT00940000156589	ENSGT00940000160382	ENSGT00940000157878	ENSGT00940000154950.y.a.d #24	ENSGT00940000156171.g	ENSGT00390000017043	ENSGT00490000044733	ENSGT00940000157587.k	ENSGT00940000156801.h	ENSGT00940000158403	ENSGT00940000157297	ENSGT00940000162501	ENSGT01020000230593.A.a.a.b.a	ENSGT00940000158660	ENSGT00930000150973.B.f #22	ENSGT00940000154391.a.a	ENSGT00390000009908	ENSGT00940000156063.k	ENSGT00940000154978	ENSGT00940000160339	ENSGT01100000263512.a.a.b.b	ENSGT00940000155201.c	ENSGT00940000158472	ENSGT00940000159559	ENSGT00940000159333.j	ENSGT00940000154895.b	ENSGT01050000244827.C.c.b	ENSGT00940000154778.d	ENSGT00390000018433	ENSGT00940000155694.g
Zebra mbuna	MODERN SPECIES	1109	ENSMZEG00005009696	elmod2 (ENSMZEG00005009673)	ucp1 (ENSMZEG00005009660)	TBC1D9 (ENSMZEG00005009608)	ENSMZEG00005009578 #24	rnf150a (ENSMZEG00005009552)	znf330 (ENSMZEG00005009522)	ENSMZEG00005009512	INPP4B (ENSMZEG00005009493)	gab1 (ENSMZEG00005009435)	USP38 (ENSMZEG00005009405)	smarca5 (ENSMZEG00005009369)	frem3 (ENSMZEG00005009329)	ENSMZEG00005009316	hhip (ENSMZEG00005009266)	ENSMZEG00005009254 #22	smad1 (ENSMZEG00005009232)	mmaa (ENSMZEG00005009182)	ZNF827 (ENSMZEG00005009161)	lsm6 (ENSMZEG00005009146)	pou4f2 (ENSMZEG00005009128)	ednraa (ENSMZEG00005009114)	tmem184c (ENSMZEG00005009093)	prmt9 (ENSMZEG00005009068)	arhgap10 (ENSMZEG00005009038)	nr3c2 (ENSMZEG00005009013)	ENSMZEG00005008920	mab21l2 (ENSMZEG00005008865)	LRBA (ENSMZEG00005008630)	rps3a (ENSMZEG00005008581)	sh3d19 (ENSMZEG00005008560)
P. nyererei	MODERN SPECIES	317	zgc:154142 (ENSPNYG00000011477)	ENSPNYG00000011900	elmod2 (ENSPNYG00000011913)	ucp1 (ENSPNYG00000011941)	TBC1D9 (ENSPNYG00000011965)	ENSPNYG00000012011 #24	rnf150a (ENSPNYG00000012052)	znf330 (ENSPNYG00000012078)	ENSPNYG00000012123	INPP4B (ENSPNYG00000012150)	gab1 (ENSPNYG00000012209)	USP38 (ENSPNYG00000012254)	smarca5 (ENSPNYG00000012299)	frem3 (ENSPNYG00000012348)	hhip (ENSPNYG00000012413)	ENSPNYG00000012454 #22	smad1 (ENSPNYG00000012479)	mmaa (ENSPNYG00000012505)	ZNF827 (ENSPNYG00000012573)	lsm6 (ENSPNYG00000012614)	pou4f2 (ENSPNYG00000012640)	ednraa (ENSPNYG00000012650)	tmem184c (ENSPNYG00000012680)	prmt9 (ENSPNYG00000012732)	arhgap10 (ENSPNYG00000012835)	nr3c2 (ENSPNYG00000012856)	ENSPNYG00000013051	LRBA (ENSPNYG00000013448)	mab21l2 (ENSPNYG00000013640)	rps3a (ENSPNYG00000013659)	sh3d19 (ENSPNYG00000013741)
Lyretail cichlid	MODERN SPECIES	332											gab1 (ENSNBRG00000004404)	USP38 (ENSNBRG00000004450)	smarca5 (ENSNBRG00000004463)	frem3 (ENSNBRG00000004518)	hhip (ENSNBRG00000004604)	ENSNBRG00000004660 #22	smad1 (ENSNBRG00000004678)	mmaa (ENSNBRG00000004712)	ZNF827 (ENSNBRG00000004845)	lsm6 (ENSNBRG00000004887)	pou4f2 (ENSNBRG00000004909)	ednraa (ENSNBRG00000004980)	tmem184c (ENSNBRG00000004993)	prmt9 (ENSNBRG00000005026)	arhgap10 (ENSNBRG00000005038)	nr3c2 (ENSNBRG00000005072)	ENSNBRG00000005336	ENSNBRG00000005378	LRBA (ENSNBRG00000005672)	mab21l2 (ENSNBRG00000005824)	rps3a (ENSNBRG00000005834)
Midas cichlid	MODERN SPECIES	500	ENSACIG00000017357	elmod2 (ENSACIG00000017346)	ucp1 (ENSACIG00000017327)	TBC1D9 (ENSACIG00000017296)	ENSACIG00000017258 #24	rnf150a (ENSACIG00000017204)	znf330 (ENSACIG00000017179)	ENSACIG00000017167	INPP4B (ENSACIG00000017130)	gab1 (ENSACIG00000017106)	USP38 (ENSACIG00000017032)	smarca5 (ENSACIG00000016982)	ENSACIG00000016943	frem3 (ENSACIG00000016876)	hhip (ENSACIG00000016839)	ENSACIG00000016826 #22	smad1 (ENSACIG00000016808)	mmaa (ENSACIG00000016787)	ZNF827 (ENSACIG00000016727)	lsm6 (ENSACIG00000016711)	pou4f2 (ENSACIG00000016679)	ednraa (ENSACIG00000016660)	tmem184c (ENSACIG00000016638)	prmt9 (ENSACIG00000016532)	arhgap10 (ENSACIG00000016458)	nr3c2 (ENSACIG00000016441)	ENSACIG00000016143	mab21l2 (ENSACIG00000016101)	LRBA (ENSACIG00000015968)	rps3a (ENSACIG00000015940)	sh3d19 (ENSACIG00000015883)
Pomacentridae	ANCESTRAL SPECIES	8	ENSGT00940000182021	ENSGT00940000156589	ENSGT00940000160382	ENSGT00940000157878	ENSGT00940000154950.y.a.d #24	ENSGT00940000156171.g	ENSGT00390000017043	ENSGT00490000044733	ENSGT00390000016264	ENSGT00940000157587.k	ENSGT00940000156801.h	ENSGT00940000158403	ENSGT00940000157297	ENSGT00940000162501	ENSGT00940000158660	ENSGT00930000150973.B.f #22	ENSGT00940000154391.a.a	ENSGT00390000009908	ENSGT00940000156063.k	ENSGT00940000154978	ENSGT00940000160339	ENSGT01100000263512.a.a.b.b	ENSGT00940000155201.c	ENSGT00940000158472	ENSGT00940000159559	ENSGT00940000159333.j	ENSGT00940000154895.b.e	ENSGT01050000244827.C.c.b	ENSGT00940000154778.d	ENSGT00390000018433	ENSGT00940000155694.g
Pomacentridae_A	ANCESTRAL SPECIES	51															ENSGT00940000158660	ENSGT00930000150973.B.f #22	ENSGT00940000154391.a.a	ENSGT00390000009908	ENSGT00940000156063.k	ENSGT00940000154978	ENSGT00940000160339	ENSGT01100000263512.a.a.b.b	ENSGT00940000155201.c	ENSGT00940000158472	ENSGT00940000159559	ENSGT00940000159333.j	ENSGT00940000154895.b.e	ENSGT01050000244827.C.c.b	ENSGT00940000154778.d	ENSGT00390000018433	ENSGT00940000155694.g
Amphiprion	ANCESTRAL SPECIES	136														ENSGT00940000163836.a	ENSGT00940000158660	ENSGT00930000150973.B.f #22	ENSGT00940000154391.a.a	ENSGT00390000009908	ENSGT00940000156063.k	ENSGT00940000154978	ENSGT00940000160339	ENSGT01100000263512.a.a.b.b	ENSGT00940000155201.c	ENSGT00940000158472	ENSGT00940000159559	ENSGT00940000159333.j	ENSGT00940000154895.b.e	ENSGT01050000244827.C.c.b	ENSGT00940000154778.d	ENSGT00390000018433	ENSGT00940000155694.g
Clown anemonefish	MODERN SPECIES	3510														ENSAOCG00000003128	hhip (ENSAOCG00000001854)	ENSAOCG00000000077 #22	smad1 (ENSAOCG00000003111)	mmaa (ENSAOCG00000003107)	ZNF827 (ENSAOCG00000003103)	lsm6 (ENSAOCG00000002110)	pou4f2 (ENSAOCG00000003096)	ednraa (ENSAOCG00000000075)	tmem184c (ENSAOCG00000003089)	prmt9 (ENSAOCG00000003083)	arhgap10 (ENSAOCG00000003075)	nr3c2 (ENSAOCG00000003070)	ENSAOCG00000003067	LRBA (ENSAOCG00000003059)	mab21l2 (ENSAOCG00000000057)	rps3a (ENSAOCG00000003037)	sh3d19 (ENSAOCG00000003027)
Orange clownfish	MODERN SPECIES	17													ENSAPEG00000024136	ENSAPEG00000024127	hhip (ENSAPEG00000024099)	ENSAPEG00000024092 #22	smad1 (ENSAPEG00000024082)	mmaa (ENSAPEG00000024059)	ZNF827 (ENSAPEG00000024028)	ENSAPEG00000024005	lsm6 (ENSAPEG00000023992)	pou4f2 (ENSAPEG00000023976)	ednraa (ENSAPEG00000023965)	tmem184c (ENSAPEG00000023943)	prmt9 (ENSAPEG00000023933)	arhgap10 (ENSAPEG00000023901)	nr3c2 (ENSAPEG00000023891)	ENSAPEG00000023874	mab21l2 (ENSAPEG00000023849)	LRBA (ENSAPEG00000023783)	rps3a (ENSAPEG00000023737)
Bicolor damselfish	MODERN SPECIES	273					TBC1D9 (ENSSPAG00000002265)	aimp1a (ENSSPAG00000002363) #24	rnf150a (ENSSPAG00000002551)	znf330 (ENSSPAG00000002574)	IL15 (ENSSPAG00000002613)	INPP4B (ENSSPAG00000002647)	gab1 (ENSSPAG00000002811)	USP38 (ENSSPAG00000002838)	smarca5 (ENSSPAG00000002894)	frem3 (ENSSPAG00000003014)	hhip (ENSSPAG00000003111)	ENSSPAG00000003148 #22	smad1 (ENSSPAG00000003181)	mmaa (ENSSPAG00000003209)	ZNF827 (ENSSPAG00000003227)	lsm6 (ENSSPAG00000003246)	pou4f2 (ENSSPAG00000003264)	ednraa (ENSSPAG00000003314)	tmem184c (ENSSPAG00000003350)	prmt9 (ENSSPAG00000003385)	arhgap10 (ENSSPAG00000003410)	nr3c2 (ENSSPAG00000003474)	ENSSPAG00000003493
Elephant shark	DUPLICATION
Elephant shark	MODERN SPECIES	1715							ugt8 (ENSCMIG00000007765)	ENSCMIG00000007769	adh5 (ENSCMIG00000007822)	trmt10a (ENSCMIG00000007970)	mttp (ENSCMIG00000008003)	ENSCMIG00000008136	ppm1kb (ENSCMIG00000008139)	ints12 (ENSCMIG00000008141) #20	gstcd (ENSCMIG00000008155) #21	ENSCMIG00000008176 #22	tbck (ENSCMIG00000008180) #23	aimp1a (ENSCMIG00000008215) #24	ENSCMIG00000008218 #25
Elephant shark	MODERN SPECIES	1552	ENSCMIG00000009741	rxfp1 (ENSCMIG00000009739)	ENSCMIG00000009737	etfdh (ENSCMIG00000009675)	ppid (ENSCMIG00000009651)	ENSCMIG00000009649	RAPGEF2 (ENSCMIG00000009339)	fstl5 (ENSCMIG00000009205)	ENSCMIG00000009185	npy1r (ENSCMIG00000009184)	npy5r (ENSCMIG00000009183)	tma16 (ENSCMIG00000009182)	MARCHF1 (ENSCMIG00000009179)	frem3 (ENSCMIG00000009147)	hhip (ENSCMIG00000009101)	ENSCMIG00000009083 #22	anapc10 (ENSCMIG00000009079)	abce1 (ENSCMIG00000009052)	ENSCMIG00000009041	ZNF827 (ENSCMIG00000009036)	mmaa (ENSCMIG00000009012)	ENSCMIG00000008994	lsm6 (ENSCMIG00000008992)	REELD1 (ENSCMIG00000008990)	slc10a7 (ENSCMIG00000008986)	ENSCMIG00000008978	ednrab (ENSCMIG00000008970)	tmem184c (ENSCMIG00000008967)	prmt9 (ENSCMIG00000008962)	ENSCMIG00000008950
Cyclostomata	ANCESTRAL SPECIES																	ENSGT00930000150973.B #22
Lamprey	MODERN SPECIES	396																ENSPMAG00000008676 #22	ENSPMAG00000008672	aimp1a (ENSPMAG00000008660) #24	mtnr1aa (ENSPMAG00000008658)	ENSPMAG00000008649	ENSPMAG00000008644
Hagfish	MODERN SPECIES	284														WNT7B (ENSEBUG00000016516)	ENSEBUG00000003514	ENSEBUG00000007367 #22	ENSEBUG00000012018	ENSEBUG00000003715
Ciona	ANCESTRAL SPECIES																	ENSGT00930000150973.B #22
Ciona savignyi	MODERN SPECIES	203	ENSCSAVG00000008120	ENSCSAVG00000008123	ENSCSAVG00000008125	ENSCSAVG00000008127	ENSCSAVG00000008165	ENSCSAVG00000008170	ENSCSAVG00000008224	ENSCSAVG00000008337	ENSCSAVG00000008574	ENSCSAVG00000008578	ENSCSAVG00000008655	ENSCSAVG00000008660	ENSCSAVG00000008733	ENSCSAVG00000008734	ENSCSAVG00000008737	ENSCSAVG00000008759 #22
Ciona intestinalis	MODERN SPECIES	1	ENSCING00000022722	ENSCING00000013997	ENSCING00000020177	ENSCING00000020126	ENSCING00000024957	ENSCING00000022671	ENSCING00000008228	ENSCING00000014000	ENSCING00000008227	ENSCING00000009875	ENSCING00000008221	ENSCING00000008217	zf(cchc)-20 (ENSCING00000008215)	ENSCING00000013999	ENSCING00000021959	ENSCING00000009874 #22	ENSCING00000014002	ENSCING00000014001	ENSCING00000024976	ENSCING00000008242	ENSCING00000008241	ENSCING00000014003	ENSCING00000008240	ENSCING00000008243	cmas (ENSCING00000014004)	ENSCING00000019047	ENSCING00000008248	ENSCING00000008257	erd2 (ENSCING00000008256)	ENSCING00000008255	ENSCING00000018045