Bilateria	ANCESTRAL SPECIES																	ENSGT00940000153430.a.b #22
Chordata	ANCESTRAL SPECIES																	ENSGT00940000153430.a.b #22
Vertebrata	ANCESTRAL SPECIES																	ENSGT00940000153430.a.b #22
Gnathostomata	ANCESTRAL SPECIES																	ENSGT00940000153430.a.b #22
Euteleostomi	ANCESTRAL SPECIES	4	ENSGT00940000156955	ENSGT00940000155157	ENSGT00940000169682	ENSGT00390000011476	ENSGT00500000044926	ENSGT00940000155447	ENSGT00390000004068	ENSGT00940000158288 #9	ENSGT00940000156602 #10	ENSGT00390000017265 #11	ENSGT00940000155996 #12	ENSGT00940000159204 #13	ENSGT00940000154962.B	ENSGT00940000161426 #19	ENSGT00940000160702 #20	ENSGT00940000153430.a.b #22	ENSGT01030000234641.a.b #21	ENSGT00940000164222	ENSGT00730000111063 #24	ENSGT00950000183135.B.b	ENSGT00390000000403 #26	ENSGT00940000162008 #27	ENSGT00940000164128.a	ENSGT00390000008978 #28	ENSGT00940000158482 #29	ENSGT00940000157425.B #31	ENSGT00390000017746 #32	ENSGT00940000157593 #33	ENSGT00700000104522 #34	ENSGT00940000161152 #35	ENSGT00940000155068.a.b
Sarcopterygii	ANCESTRAL SPECIES	13	ENSGT00940000157052	ENSGT00940000165188	ENSGT00390000011476	ENSGT00500000044926	ENSGT00940000155447	ENSGT00390000004068	ENSGT00940000158288 #9	ENSGT00940000156602 #10	ENSGT00390000017265 #11	ENSGT00940000155996 #12	ENSGT00940000159204 #13	ENSGT00940000154962.B	ENSGT00940000160482 #16	ENSGT00940000161426 #19	ENSGT00940000160702 #20	ENSGT00940000153430.a.b #22	ENSGT01030000234641.a.b #21	ENSGT00940000164222	ENSGT00730000111063 #24	ENSGT00950000183135.B.b	ENSGT00390000000403 #26	ENSGT00940000162008 #27	ENSGT00940000164128.a	ENSGT00390000008978 #28	ENSGT00940000158482 #29	ENSGT00940000157425.B #31	ENSGT00390000017746 #32	ENSGT00940000157593 #33	ENSGT00700000104522 #34	ENSGT00940000161152 #35	ENSGT00510000048167.a #37
Tetrapoda	ANCESTRAL SPECIES	17	ENSGT00940000156955	ENSGT00940000155157	ENSGT00390000011476	ENSGT00500000044926	ENSGT00940000155447	ENSGT00390000004068	ENSGT00940000158288 #9	ENSGT00940000156602 #10	ENSGT00390000017265 #11	ENSGT00940000155996 #12	ENSGT00940000159204 #13	ENSGT00940000154962.B	ENSGT00940000160482 #16	ENSGT00940000161426 #19	ENSGT00940000160702 #20	ENSGT00940000153430.a.b #22	ENSGT01030000234641.a.b #21	ENSGT00940000164222	ENSGT00730000111063 #24	ENSGT00950000183135.B.b	ENSGT00390000000403 #26	ENSGT00940000162008 #27	ENSGT00940000164128.a	ENSGT00390000008978 #28	ENSGT00940000158482 #29	ENSGT00940000157425.B #31	ENSGT00390000017746 #32	ENSGT00940000157593 #33	ENSGT00700000104522 #34	ENSGT00940000161152 #35	ENSGT00510000048167.a #37
Amniota	ANCESTRAL SPECIES	10	ENSGT00940000161718	ENSGT00940000157052	ENSGT00390000011476	ENSGT00500000044926	ENSGT00940000155447	ENSGT00390000004068	ENSGT00940000158288 #9	ENSGT00940000156602 #10	ENSGT00390000017265 #11	ENSGT00960000190376	ENSGT00940000155996 #12	ENSGT00940000159204 #13	ENSGT00940000160482 #16	ENSGT00940000161426 #19	ENSGT00940000160702.b #20	ENSGT00940000153430.a.b #22	ENSGT01030000234641.a.b #21	ENSGT00940000164222	ENSGT00730000111063 #24	ENSGT00950000183135.B.b	ENSGT00390000000403 #26	ENSGT00940000162008 #27	ENSGT00940000164128.a	ENSGT00390000008978 #28	ENSGT00940000158482 #29	ENSGT00940000157425.B #31	ENSGT00390000017746 #32	ENSGT00940000157593 #33	ENSGT00700000104522 #34	ENSGT00940000161152 #35	ENSGT00510000048167.a #37
Mammalia	ANCESTRAL SPECIES	14	ENSGT00940000157052	ENSGT00940000165188	ENSGT00390000011476	ENSGT00500000044926	ENSGT00940000155447	ENSGT00390000004068	ENSGT00940000158288 #9	ENSGT00940000156602 #10	ENSGT00390000017265 #11	ENSGT00960000190376	ENSGT00940000155996 #12	ENSGT00940000159204 #13	ENSGT00940000160482 #16	ENSGT00940000161426 #19	ENSGT00940000160702.b #20	ENSGT00940000153430.a.b #22	ENSGT01030000234641.a.b #21	ENSGT00390000014431 #23	ENSGT00940000168868	ENSGT00940000164222	ENSGT00730000111063 #24	ENSGT00950000183135.B.b	ENSGT00390000000403 #26	ENSGT00940000162008 #27	ENSGT00940000164128.a	ENSGT00390000008978 #28	ENSGT00940000158482 #29	ENSGT00940000157425.B #31	ENSGT00390000017746 #32	ENSGT00940000157593 #33	ENSGT00700000104522 #34
Theria	ANCESTRAL SPECIES	26	ENSGT00940000161718	ENSGT00940000157052	ENSGT00390000011476	ENSGT00500000044926	ENSGT00940000155447	ENSGT00390000004068	ENSGT00940000158288 #9	ENSGT00940000156602 #10	ENSGT00390000017265 #11	ENSGT00960000190376	ENSGT00940000155996 #12	ENSGT00940000159204 #13	ENSGT00940000160482 #16	ENSGT00940000161426 #19	ENSGT00940000160702.b #20	ENSGT00940000153430.a.b #22	ENSGT01030000234641.a.b #21	ENSGT00390000014431 #23	ENSGT00940000168868	ENSGT00940000164222	ENSGT00730000111063 #24	ENSGT00950000183135.B.b	ENSGT00390000000403 #26	ENSGT00940000162008 #27	ENSGT00940000164128.a	ENSGT00390000008978 #28	ENSGT00940000158482 #29	ENSGT00940000157425.B #31	ENSGT00390000017746 #32	ENSGT00940000157593 #33	ENSGT00700000104522 #34
Eutheria	ANCESTRAL SPECIES	13	ENSGT00940000157052	ENSGT00390000011476	ENSGT00390000016534.B	ENSGT00500000044926	ENSGT00940000155447	ENSGT00390000004068	ENSGT00940000158288 #9	ENSGT00940000156602 #10	ENSGT00390000017265 #11	ENSGT00960000190376	ENSGT00940000155996 #12	ENSGT00940000159204 #13	ENSGT00940000160482 #16	ENSGT00940000161426 #19	ENSGT00940000160702.b #20	ENSGT00940000153430.a.b #22	ENSGT01030000234641.a.b #21	ENSGT00390000014431 #23	ENSGT00730000111063 #24	ENSGT00950000183135.B.b	ENSGT00390000000403 #26	ENSGT00940000162008 #27	ENSGT00390000008978 #28	ENSGT00940000158482 #29	ENSGT00940000157425.B #31	ENSGT00390000017746 #32	ENSGT00940000157593 #33	ENSGT00700000104522 #34	ENSGT00940000161152 #35	ENSGT00510000048167.a #37	ENSGT00950000182805.a.b
Boreoeutheria	ANCESTRAL SPECIES	16	ENSGT00940000157052	ENSGT00390000011476	ENSGT00390000016534.B	ENSGT00500000044926	ENSGT00940000155447	ENSGT00390000004068	ENSGT00940000158288 #9	ENSGT00940000156602 #10	ENSGT00390000017265 #11	ENSGT00960000190376	ENSGT00940000155996 #12	ENSGT00940000159204 #13	ENSGT00940000160482 #16	ENSGT00940000161426 #19	ENSGT00940000160702.b #20	ENSGT00940000153430.a.b #22	ENSGT01030000234641.a.b #21	ENSGT00390000014431 #23	ENSGT00730000111063 #24	ENSGT00950000183135.B.b	ENSGT00390000000403 #26	ENSGT00940000162008 #27	ENSGT00390000008978 #28	ENSGT00390000010476	ENSGT00940000158482 #29	ENSGT00940000157425.B #31	ENSGT00390000017746 #32	ENSGT00940000157593 #33	ENSGT00700000104522 #34	ENSGT00940000161152 #35	ENSGT00510000048167.a #37
Euarchontoglires	ANCESTRAL SPECIES	16	ENSGT00940000161718	ENSGT00940000157052	ENSGT00390000011476	ENSGT00390000016534.B	ENSGT00500000044926	ENSGT00940000155447	ENSGT00390000004068	ENSGT00940000158288 #9	ENSGT00940000156602 #10	ENSGT00390000017265 #11	ENSGT00940000155996 #12	ENSGT00940000159204 #13	ENSGT00940000160482 #16	ENSGT00940000161426 #19	ENSGT00940000160702.b #20	ENSGT00940000153430.a.b #22	ENSGT01030000234641.a.b #21	ENSGT00390000014431 #23	ENSGT00730000111063 #24	ENSGT00950000183135.B.b	ENSGT00390000000403 #26	ENSGT00940000162008 #27	ENSGT00390000008978 #28	ENSGT00390000010476	ENSGT00940000158482 #29	ENSGT00910000147822	ENSGT00940000157425.B #31	ENSGT00390000017746 #32	ENSGT00940000157593 #33	ENSGT00700000104522 #34	ENSGT00940000161152 #35
Primates	ANCESTRAL SPECIES	16	ENSGT00940000161718	ENSGT00940000157052	ENSGT00390000011476	ENSGT00390000016534.B	ENSGT00500000044926	ENSGT00940000155447	ENSGT00390000004068	ENSGT00940000158288 #9	ENSGT00940000156602 #10	ENSGT00390000017265 #11	ENSGT00940000155996 #12	ENSGT00940000159204 #13	ENSGT00940000160482 #16	ENSGT00940000161426 #19	ENSGT00940000160702.b #20	ENSGT00940000153430.a.b #22	ENSGT01030000234641.a.b #21	ENSGT00390000014431 #23	ENSGT00730000111063 #24	ENSGT00950000183135.B.b	ENSGT00390000000403 #26	ENSGT00940000162008 #27	ENSGT00390000008978 #28	ENSGT00390000010476	ENSGT00940000158482 #29	ENSGT00910000147822	ENSGT00940000157425.B #31	ENSGT00390000017746 #32	ENSGT00940000157593 #33	ENSGT00700000104522 #34	ENSGT00940000161152 #35
Haplorrhini	ANCESTRAL SPECIES	11	ENSGT00940000155157	ENSGT00940000161718	ENSGT00940000157052	ENSGT00390000011476	ENSGT00500000044926	ENSGT00940000155447	ENSGT00390000004068	ENSGT00940000158288 #9	ENSGT00940000156602 #10	ENSGT00390000017265 #11	ENSGT00940000155996 #12	ENSGT00940000159204 #13	ENSGT00940000160482 #16	ENSGT00940000161426 #19	ENSGT00940000160702.b #20	ENSGT00940000153430.a.b #22	ENSGT01030000234641.a.b #21	ENSGT00390000014431 #23	ENSGT00730000111063 #24	ENSGT00950000183135.B.b	ENSGT00390000000403 #26	ENSGT00940000162008 #27	ENSGT00390000008978 #28	ENSGT00390000010476	ENSGT00940000158482 #29	ENSGT00910000147822	ENSGT00940000157425.B #31	ENSGT00390000017746 #32	ENSGT00940000157593 #33	ENSGT00700000104522 #34	ENSGT00940000161152 #35
Simiiformes	DUPLICATION
Simiiformes	ANCESTRAL SPECIES	17	ENSGT00500000044926.b	ENSGT00940000155447	ENSGT00390000004068	ENSGT00940000158288 #9	ENSGT00440000033468.c.b	ENSGT00940000156602 #10	ENSGT00390000017265 #11	ENSGT00940000155996 #12	ENSGT00940000154259.k.a	ENSGT00940000159204 #13	ENSGT00500000044913.b	ENSGT00940000160482 #16	ENSGT00940000161426 #19	ENSGT00910000148293	ENSGT00940000160702.b #20	ENSGT00940000153430.a.b.r #22	ENSGT01030000234641.a.b #21	ENSGT00390000014431 #23	ENSGT00730000111063 #24	ENSGT00950000183135.B.b	ENSGT00390000000403 #26	ENSGT00940000162008 #27	ENSGT00390000008978 #28	ENSGT00390000010476	ENSGT00940000158482 #29	ENSGT00910000147822	ENSGT00940000157425.B #31	ENSGT00390000017746 #32	ENSGT00940000157593 #33	ENSGT00700000104522 #34	ENSGT00940000161152 #35
Catarrhini	ANCESTRAL SPECIES	18	ENSGT00940000155447	ENSGT00390000004068	ENSGT00940000158288 #9	ENSGT00440000033468.c.b	ENSGT00940000156602 #10	ENSGT00390000017265 #11	ENSGT00940000155996 #12	ENSGT00940000154259.k.a	ENSGT00940000159204 #13	ENSGT00500000044913.b	ENSGT00940000160482 #16	ENSGT00910000147084	ENSGT00940000161426 #19	ENSGT00910000148293	ENSGT00940000160702.b #20	ENSGT00940000153430.a.b.r #22	ENSGT01030000234641.a.b #21	ENSGT00390000014431 #23	ENSGT00730000111063 #24	ENSGT00950000183135.B.b	ENSGT00390000000403 #26	ENSGT00390000016475.e.a.a.a	ENSGT00940000162008 #27	ENSGT00390000008978.q.a #28	ENSGT00390000010476	ENSGT00940000158482 #29	ENSGT00910000147822	ENSGT00940000157425.B #31	ENSGT00390000017746 #32	ENSGT00940000157593 #33	ENSGT00700000104522 #34
Cercopithecidae	ANCESTRAL SPECIES	15	ENSGT00390000011476	ENSGT00500000044926.b	ENSGT00940000155447	ENSGT00390000004068	ENSGT00940000158288 #9	ENSGT00940000156602 #10	ENSGT00390000017265 #11	ENSGT00940000155996 #12	ENSGT00940000154259.k.a	ENSGT00940000159204 #13	ENSGT00500000044913.b	ENSGT00940000160482 #16	ENSGT00910000147084	ENSGT00940000161426 #19	ENSGT00940000160702.b #20	ENSGT00940000153430.a.b.r #22	ENSGT01030000234641.a.b #21	ENSGT00390000014431 #23	ENSGT00730000111063 #24	ENSGT00950000183135.B.b	ENSGT00390000000403 #26	ENSGT00390000016475.e.a.a.a	ENSGT00940000162008 #27	ENSGT00390000008978.q.a.a #28	ENSGT00390000010476	ENSGT00940000158482 #29	ENSGT00910000147822	ENSGT00940000157425.B #31	ENSGT00390000017746 #32	ENSGT00940000157593 #33	ENSGT00700000104522 #34
Cercopithecinae	ANCESTRAL SPECIES	15	ENSGT00940000157052	ENSGT00390000011476	ENSGT00500000044926.b	ENSGT00940000155447	ENSGT00390000004068	ENSGT00940000158288 #9	ENSGT00940000156602 #10	ENSGT00390000017265 #11	ENSGT00940000155996 #12	ENSGT00940000154259.k.a	ENSGT00940000159204 #13	ENSGT00500000044913.b	ENSGT00940000160482 #16	ENSGT00940000161426 #19	ENSGT00940000160702.b #20	ENSGT00940000153430.a.b.r #22	ENSGT01030000234641.a.b #21	ENSGT00390000014431 #23	ENSGT00730000111063 #24	ENSGT00950000183135.B.b	ENSGT00390000000403 #26	ENSGT00390000016475.e.a.a.a	ENSGT00940000162008 #27	ENSGT00390000008978.q.a.a #28	ENSGT00390000010476	ENSGT00940000158482 #29	ENSGT00940000157425.B #31	ENSGT00390000017746 #32	ENSGT00940000157593 #33	ENSGT00700000104522 #34	ENSGT00940000161152 #35
Cercopithecinae_a	ANCESTRAL SPECIES	14	ENSGT00940000157052	ENSGT00390000011476	ENSGT00500000044926.b	ENSGT00940000155447	ENSGT00390000004068	ENSGT00940000158288 #9	ENSGT00940000156602 #10	ENSGT00390000017265 #11	ENSGT00940000155996 #12	ENSGT00940000154259.k.a	ENSGT00940000159204 #13	ENSGT00500000044913.b	ENSGT00940000160482 #16	ENSGT00940000161426 #19	ENSGT00940000160702.b #20	ENSGT00940000153430.a.b.r #22	ENSGT01030000234641.a.b #21	ENSGT00390000014431 #23	ENSGT00730000111063 #24	ENSGT00950000183135.B.b	ENSGT00390000000403 #26	ENSGT00390000016475.e.a.a.a	ENSGT00940000162008 #27	ENSGT00390000008978.q.a.a #28	ENSGT00390000010476	ENSGT00940000158482 #29	ENSGT00940000157425.B #31	ENSGT00390000017746 #32	ENSGT00940000157593 #33	ENSGT00700000104522 #34	ENSGT00940000161152 #35
Macaca	ANCESTRAL SPECIES	11	ENSGT00940000161718	ENSGT00940000157052	ENSGT00390000011476	ENSGT00500000044926.b	ENSGT00940000155447	ENSGT00390000004068	ENSGT00940000158288 #9	ENSGT00940000156602 #10	ENSGT00390000017265 #11	ENSGT00940000155996 #12	ENSGT00940000159204 #13	ENSGT00500000044913.b	ENSGT00940000160482 #16	ENSGT00940000161426 #19	ENSGT00940000160702.b #20	ENSGT00940000153430.a.b.r #22	ENSGT01030000234641.a.b #21	ENSGT00390000014431 #23	ENSGT00730000111063 #24	ENSGT00950000183135.B.b	ENSGT00390000000403 #26	ENSGT00390000016475.e.a.a.a	ENSGT00940000162008 #27	ENSGT00390000008978.q.a.a #28	ENSGT00390000010476	ENSGT00940000158482 #29	ENSGT00940000157425.B #31	ENSGT00390000017746 #32	ENSGT00940000157593 #33	ENSGT00700000104522 #34	ENSGT00940000161152 #35
Macaca_a	ANCESTRAL SPECIES	13	ENSGT00390000011476	ENSGT00500000044926.b	ENSGT01100000263539.b.a.a.a.a.a.b.b.a.a.a.b.b.b.a.b.a.b.b.a	ENSGT00940000155447	ENSGT00390000004068	ENSGT00940000158288 #9	ENSGT00940000156602 #10	ENSGT00390000017265 #11	ENSGT00940000155996 #12	ENSGT00940000159204 #13	ENSGT00940000161627.a.a.a.b.b.b.a.a.a.a.c.a #14	ENSGT00390000012433.a.a.a.a.b #15	ENSGT00940000160482 #16	ENSGT00940000161426 #19	ENSGT00940000160702.b #20	ENSGT00940000153430.a.b.r #22	ENSGT01030000234641.a.b #21	ENSGT00390000014431 #23	ENSGT00730000111063 #24	ENSGT00950000183135.B.b	ENSGT01100000263508.A.d.e.b.a.c.b.c.a.b.a.a.b.a #25	ENSGT00390000000403 #26	ENSGT00940000162008 #27	ENSGT00390000008978.q.a.a #28	ENSGT00390000010476	ENSGT00940000158482 #29	ENSGT00940000166143.A.a.b.a.a.a.a #30	ENSGT00940000157425.B #31	ENSGT00390000017746 #32	ENSGT00940000157593 #33	ENSGT00700000104522 #34
Crab-eating macaque	MODERN SPECIES	19	ENSMFAG00000065246 #7	ENSMFAG00000062414 #8	ENSMFAG00000037481 #9	SEC23IP (ENSMFAG00000042549) #10	MCMBP (ENSMFAG00000000064) #11	INPP5F (ENSMFAG00000042323) #12	BAG3 (ENSMFAG00000035851) #13	ENSMFAG00000050052 #14	ENSMFAG00000063730 #15	TIAL1 (ENSMFAG00000002789) #16	ENSMFAG00000049112 #17	ENSMFAG00000047317 #18	RGS10 (ENSMFAG00000035933) #19	GRK5 (ENSMFAG00000000421) #20	SFXN4 (ENSMFAG00000043135) #21	PRDX3 (ENSMFAG00000039826) #22	DENND10 (ENSMFAG00000055072) #23	EIF3A (ENSMFAG00000032082) #24	ENSMFAG00000053432 #25	CACUL1 (ENSMFAG00000056962) #26	PRLHR (ENSMFAG00000030136) #27	FAM204A (ENSMFAG00000031620) #28	RAB11FIP2 (ENSMFAG00000000822) #29	ENSMFAG00000056699 #30	EMX2 (ENSMFAG00000062794) #31	PDZD8 (ENSMFAG00000037170) #32	SLC18A2 (ENSMFAG00000031383) #33	KCNK18 (ENSMFAG00000045802) #34	VAX1 (ENSMFAG00000044674) #35	ENSMFAG00000048457 #36	SHTN1 (ENSMFAG00000042541) #37
Rhesus	MODERN SPECIES	19	ENSMMUG00000064557	ENSMMUG00000064321	PLPP4 (ENSMMUG00000008724) #9	SEC23IP (ENSMMUG00000009561) #10	ENSMMUG00000065302	MCMBP (ENSMMUG00000009559) #11	INPP5F (ENSMMUG00000009558) #12	BAG3 (ENSMMUG00000000798) #13	ENSMMUG00000049613 #14	ENSMMUG00000051594 #15	TIAL1 (ENSMMUG00000001472) #16	ENSMMUG00000054942 ##17	RGS10 (ENSMMUG00000021610) #19	GRK5 (ENSMMUG00000004596) #20	ENSMMUG00000063441 ##17	PRDX3 (ENSMMUG00000008294) #22	SFXN4 (ENSMMUG00000008291) #21	DENND10 (ENSMMUG00000008289) #23	EIF3A (ENSMMUG00000008994) #24	NANOS1 (ENSMMUG00000048654)	ENSMMUG00000061613	ENSMMUG00000062698 #25	CACUL1 (ENSMMUG00000016370) #26	PRLHR (ENSMMUG00000052816) #27	FAM204A (ENSMMUG00000012741) #28	ENSMMUG00000041447	RAB11FIP2 (ENSMMUG00000021805) #29	ENSMMUG00000062119 #30	EMX2 (ENSMMUG00000060255) #31	PDZD8 (ENSMMUG00000053348) #32	SLC18A2 (ENSMMUG00000014817) #33
Pig-tailed macaque	DUPLICATION
Pig-tailed macaque	MODERN SPECIES	90							PLPP4 (ENSMNEG00000036322) #9	SEC23IP (ENSMNEG00000045086) #10	MCMBP (ENSMNEG00000039601) #11	INPP5F (ENSMNEG00000032634) #12	BAG3 (ENSMNEG00000042888) #13	ENSMNEG00000039985	TIAL1 (ENSMNEG00000032245) #16	RGS10 (ENSMNEG00000038381) #19	GRK5 (ENSMNEG00000041526) #20	ENSMNEG00000043574 #22	SFXN4 (ENSMNEG00000041851) #21	ENSMNEG00000036385 #23	EIF3A (ENSMNEG00000018271) #24	NANOS1 (ENSMNEG00000022527)	CACUL1 (ENSMNEG00000035853) #26	ENSMNEG00000029432	PRLHR (ENSMNEG00000036983) #27	FAM204A (ENSMNEG00000042700) #28	ENSMNEG00000032884	RAB11FIP2 (ENSMNEG00000032231) #29	EMX2 (ENSMNEG00000027592) #31	PDZD8 (ENSMNEG00000045026) #32	SLC18A2 (ENSMNEG00000008691) #33	KCNK18 (ENSMNEG00000037673) #34	VAX1 (ENSMNEG00000042756) #35
Pig-tailed macaque	MODERN SPECIES	517	ENSMNEG00000009689	ENSMNEG00000026858	ENSMNEG00000028899	ENSMNEG00000037055	ENSMNEG00000038165	ENSMNEG00000031657	SYT1 (ENSMNEG00000030551)	PAWR (ENSMNEG00000004020)	PPP1R12A (ENSMNEG00000033679)	OTOGL (ENSMNEG00000034772)	PTPRQ (ENSMNEG00000045562)	MYF6 (ENSMNEG00000019739)	MYF5 (ENSMNEG00000039510)	LIN7A (ENSMNEG00000040769)	ACSS3 (ENSMNEG00000030423)	ENSMNEG00000021297 #22	PPFIA2 (ENSMNEG00000041825)	CCDC59 (ENSMNEG00000037462)	METTL25 (ENSMNEG00000042500)	TMTC2 (ENSMNEG00000028808)	ENSMNEG00000032829	SLC6A15 (ENSMNEG00000005563)	TSPAN19 (ENSMNEG00000036225)	LRRIQ1 (ENSMNEG00000037379)	ALX1 (ENSMNEG00000034993)	ENSMNEG00000000984	RASSF9 (ENSMNEG00000033486)	NTS (ENSMNEG00000040065)	MGAT4C (ENSMNEG00000029200)
Cercopithecinae_b	ANCESTRAL SPECIES	14	ENSGT00390000011476	ENSGT00500000044926.b	ENSGT00940000155447	ENSGT00390000004068	ENSGT00940000158288 #9	ENSGT00940000156602 #10	ENSGT00390000017265 #11	ENSGT00940000155996 #12	ENSGT00940000154259.k.a	ENSGT00940000159204 #13	ENSGT00940000173066	ENSGT00500000044913.b	ENSGT00940000160482 #16	ENSGT00940000161426 #19	ENSGT00940000160702.b #20	ENSGT00940000153430.a.b.r #22	ENSGT01030000234641.a.b #21	ENSGT00390000014431 #23	ENSGT00730000111063 #24	ENSGT00950000183135.B.b	ENSGT00390000000403 #26	ENSGT00390000016475.e.a.a.a	ENSGT00940000162008 #27	ENSGT00390000008978.q.a.a #28	ENSGT00390000010476	ENSGT00940000158482 #29	ENSGT00940000157425.B #31	ENSGT00390000017746 #32	ENSGT00940000157593 #33	ENSGT00700000104522 #34	ENSGT00940000161152 #35
Cercopithecinae_d	ANCESTRAL SPECIES	64	ENSGT00390000011476	ENSGT00500000044926.b	ENSGT00940000155447	ENSGT00390000004068	ENSGT00940000158288 #9	ENSGT00940000156602 #10	ENSGT00390000017265 #11	ENSGT00940000155996 #12	ENSGT00940000154259.k.a	ENSGT00940000159204 #13	ENSGT00940000173066	ENSGT00500000044913.b	ENSGT00940000160482 #16	ENSGT00940000161426 #19	ENSGT00940000160702.b #20	ENSGT00940000153430.a.b.r #22	ENSGT01030000234641.a.b #21	ENSGT00390000014431 #23	ENSGT00730000111063 #24	ENSGT00950000183135.B.b	ENSGT00390000000403 #26	ENSGT00390000016475.e.a.a.a	ENSGT00940000162008 #27	ENSGT00390000008978.q.a.a #28	ENSGT00390000010476	ENSGT00940000158482 #29	ENSGT00940000157425.B #31	ENSGT00390000017746 #32	ENSGT00940000157593 #33	ENSGT00700000104522 #34	ENSGT00940000161152 #35
Drill	MODERN SPECIES	1373	TACC2 (ENSMLEG00000044190)	NSMCE4A (ENSMLEG00000024885)	ATE1 (ENSMLEG00000029782)	FGFR2 (ENSMLEG00000027189)	WDR11 (ENSMLEG00000041010)	PLPP4 (ENSMLEG00000039049) #9	SEC23IP (ENSMLEG00000030208) #10	MCMBP (ENSMLEG00000037646) #11	INPP5F (ENSMLEG00000008038) #12	BAG3 (ENSMLEG00000040350) #13	ENSMLEG00000042707 #15	ENSMLEG00000036021	TIAL1 (ENSMLEG00000034719) #16	RGS10 (ENSMLEG00000028058) #19	GRK5 (ENSMLEG00000015118) #20	PRDX3 (ENSMLEG00000038508) #22	SFXN4 (ENSMLEG00000044253) #21	DENND10 (ENSMLEG00000025579) #23	EIF3A (ENSMLEG00000032044) #24	CACUL1 (ENSMLEG00000011976) #26	ENSMLEG00000042362	PRLHR (ENSMLEG00000014684) #27	FAM204A (ENSMLEG00000007355) #28	ENSMLEG00000005933	RAB11FIP2 (ENSMLEG00000040520) #29	EMX2 (ENSMLEG00000039220) #31	PDZD8 (ENSMLEG00000033950) #32	SLC18A2 (ENSMLEG00000033472) #33	KCNK18 (ENSMLEG00000043402) #34	ENSMLEG00000030765	SHTN1 (ENSMLEG00000034796) #37
Sooty mangabey	MODERN SPECIES	527	NSMCE4A (ENSCATG00000037970)	ATE1 (ENSCATG00000039070)	FGFR2 (ENSCATG00000037271)	WDR11 (ENSCATG00000043471)	PLPP4 (ENSCATG00000008532) #9	ENSCATG00000039059	SEC23IP (ENSCATG00000031879) #10	MCMBP (ENSCATG00000035237) #11	INPP5F (ENSCATG00000016832) #12	ENSCATG00000036096	BAG3 (ENSCATG00000043521) #13	ENSCATG00000042161	TIAL1 (ENSCATG00000043838) #16	RGS10 (ENSCATG00000032717) #19	GRK5 (ENSCATG00000025277) #20	PRDX3 (ENSCATG00000041288) #22	SFXN4 (ENSCATG00000038203) #21	DENND10 (ENSCATG00000044731) #23	EIF3A (ENSCATG00000037599) #24	NANOS1 (ENSCATG00000000994)	CACUL1 (ENSCATG00000021798) #26	PRLHR (ENSCATG00000016413) #27	FAM204A (ENSCATG00000040275) #28	ENSCATG00000013004	RAB11FIP2 (ENSCATG00000040177) #29	EMX2 (ENSCATG00000038621) #31	PDZD8 (ENSCATG00000036913) #32	SLC18A2 (ENSCATG00000035848) #33	KCNK18 (ENSCATG00000031895) #34	VAX1 (ENSCATG00000036567) #35	SHTN1 (ENSCATG00000018341) #37
Vervet Monkey	MODERN SPECIES	28	PLEKHA1 (ENSCSAG00000004609)	BTBD16 (ENSCSAG00000004617)	TACC2 (ENSCSAG00000004625)	NSMCE4A (ENSCSAG00000004638)	ATE1 (ENSCSAG00000004660)	FGFR2 (ENSCSAG00000004685)	WDR11 (ENSCSAG00000004694)	PLPP4 (ENSCSAG00000004702) #9	SEC23IP (ENSCSAG00000004713) #10	MCMBP (ENSCSAG00000004719) #11	INPP5F (ENSCSAG00000004724) #12	BAG3 (ENSCSAG00000004728) #13	TIAL1 (ENSCSAG00000004734) #16	RGS10 (ENSCSAG00000004742) #19	GRK5 (ENSCSAG00000004748) #20	PRDX3 (ENSCSAG00000004753) #22	SFXN4 (ENSCSAG00000004756) #21	ENSCSAG00000004768 #23	EIF3A (ENSCSAG00000004777) #24	CACUL1 (ENSCSAG00000004782) #26	FAM204A (ENSCSAG00000004787) #28	RAB11FIP2 (ENSCSAG00000004789) #29	EMX2 (ENSCSAG00000004790) #31	PDZD8 (ENSCSAG00000004795) #32	SLC18A2 (ENSCSAG00000004801) #33	KCNK18 (ENSCSAG00000004806) #34	VAX1 (ENSCSAG00000004808) #35	SHTN1 (ENSCSAG00000004814) #37	ENO4 (ENSCSAG00000004820)	HSPA12A (ENSCSAG00000004829)	ENSCSAG00000004831
Rhinopithecus	ANCESTRAL SPECIES	34	ENSGT00940000157052	ENSGT00390000011476	ENSGT00500000044926.a.a	ENSGT00940000155447	ENSGT00390000004068	ENSGT00940000158288 #9	ENSGT00940000156602 #10	ENSGT00390000017265 #11	ENSGT00940000155996 #12	ENSGT00940000154259.k.a	ENSGT00940000159204 #13	ENSGT00940000160482 #16	ENSGT00910000147084	ENSGT00940000161426 #19	ENSGT00940000160702.b #20	ENSGT00940000153430.a.b.r #22	ENSGT01030000234641.a.b #21	ENSGT00390000014431 #23	ENSGT00730000111063 #24	ENSGT00390000000403 #26	ENSGT00390000016475.e.a.a.a	ENSGT00940000162008 #27	ENSGT00390000008978.q.a.a #28	ENSGT00390000010476	ENSGT00940000158482 #29	ENSGT00910000147822	ENSGT00940000157425.B #31	ENSGT00390000017746 #32	ENSGT00940000157593 #33	ENSGT00700000104522 #34	ENSGT00940000161152 #35
Black snub-nosed monkey	DUPLICATION
Black snub-nosed monkey	MODERN SPECIES	1476										ENSRBIG00000039821	BAG3 (ENSRBIG00000032006) #13	ENSRBIG00000036308	TIAL1 (ENSRBIG00000027702) #16	ENSRBIG00000029160	GRK5 (ENSRBIG00000033975) #20	ENSRBIG00000042218 #22	SFXN4 (ENSRBIG00000040840) #21	DENND10 (ENSRBIG00000039084) #23	EIF3A (ENSRBIG00000043106) #24	CACUL1 (ENSRBIG00000038625) #26	PRLHR (ENSRBIG00000028447) #27	ENSRBIG00000035620 #28	ENSRBIG00000028250
Black snub-nosed monkey	MODERN SPECIES	3254																ENSRBIG00000026737 #22
Golden snub-nosed monkey	MODERN SPECIES	1908						ENSRROG00000038213	SEC23IP (ENSRROG00000035815) #10	MCMBP (ENSRROG00000014769) #11	INPP5F (ENSRROG00000037556) #12	ENSRROG00000044558	BAG3 (ENSRROG00000038656) #13	ENSRROG00000037188	TIAL1 (ENSRROG00000043377) #16	RGS10 (ENSRROG00000030607) #19	GRK5 (ENSRROG00000043736) #20	PRDX3 (ENSRROG00000040925) #22	SFXN4 (ENSRROG00000013169) #21	DENND10 (ENSRROG00000039397) #23	EIF3A (ENSRROG00000045359) #24
Hominoidea	ANCESTRAL SPECIES	11	ENSGT00500000044926.b	ENSGT00940000155447	ENSGT00390000004068	ENSGT00940000158288 #9	ENSGT00940000156602 #10	ENSGT00390000017265 #11	ENSGT00940000155996 #12	ENSGT00940000154259.k.a	ENSGT00940000159204 #13	ENSGT00500000044913.b	ENSGT00940000160482 #16	ENSGT00910000147084	ENSGT00940000161426 #19	ENSGT00910000148293	ENSGT00940000160702.b #20	ENSGT00940000153430.a.b.r #22	ENSGT01030000234641.a.b #21	ENSGT00390000014431 #23	ENSGT00730000111063 #24	ENSGT00950000183135.B.b	ENSGT00390000000403 #26	ENSGT00390000016475.e.a.a.a	ENSGT00940000162008 #27	ENSGT00390000008978.q.a #28	ENSGT00390000010476	ENSGT00940000158482 #29	ENSGT00940000157425.B #31	ENSGT00390000017746 #32	ENSGT00940000157593 #33	ENSGT00700000104522 #34	ENSGT00940000161152 #35
Hominidae	ANCESTRAL SPECIES	13	ENSGT00500000044926.b	ENSGT00940000155447	ENSGT00390000004068	ENSGT00940000158288 #9	ENSGT00940000156602 #10	ENSGT00390000017265 #11	ENSGT00940000155996 #12	ENSGT00940000154259.k.a	ENSGT00940000159204 #13	ENSGT00500000044913.b	ENSGT00940000160482 #16	ENSGT00910000147084	ENSGT00940000161426 #19	ENSGT00910000148293	ENSGT00940000160702.b #20	ENSGT00940000153430.a.b.r #22	ENSGT01030000234641.a.b #21	ENSGT00390000014431 #23	ENSGT00730000111063 #24	ENSGT00950000183135.B.b	ENSGT00390000000403 #26	ENSGT00390000016475.e.a.a.a	ENSGT00940000162008 #27	ENSGT00390000008978.q.a #28	ENSGT00390000010476	ENSGT00940000158482 #29	ENSGT00940000157425.B #31	ENSGT00390000017746 #32	ENSGT00940000157593 #33	ENSGT00700000104522 #34	ENSGT00940000161152 #35
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	17	ENSGT00500000044926.b	ENSGT00940000155447	ENSGT00390000004068	ENSGT00940000158288 #9	ENSGT00940000156602 #10	ENSGT00390000017265 #11	ENSGT00940000155996 #12	ENSGT00940000154259.k.a	ENSGT00940000159204 #13	ENSGT00500000044913.b	ENSGT00940000160482 #16	ENSGT00910000147084	ENSGT00940000161426 #19	ENSGT00910000148293	ENSGT00940000160702.b #20	ENSGT00940000153430.a.b.r #22	ENSGT01030000234641.a.b #21	ENSGT00390000014431 #23	ENSGT00730000111063 #24	ENSGT00950000183135.B.b	ENSGT00390000000403 #26	ENSGT00390000016475.e.a.a.a	ENSGT00940000162008 #27	ENSGT00390000008978.q.a #28	ENSGT00390000010476	ENSGT00940000158482 #29	ENSGT00940000157425.B #31	ENSGT00390000017746 #32	ENSGT00940000157593 #33	ENSGT00700000104522 #34	ENSGT00940000161152 #35
Homo/Pan group	ANCESTRAL SPECIES	18	ENSGT00390000011476	ENSGT00500000044926.b	ENSGT00940000155447	ENSGT00390000004068	ENSGT00940000158288 #9	ENSGT00940000156602 #10	ENSGT00390000017265 #11	ENSGT00940000155996 #12	ENSGT00940000154259.k.a	ENSGT00940000159204 #13	ENSGT00500000044913.b	ENSGT00940000160482 #16	ENSGT00910000147084	ENSGT00940000161426 #19	ENSGT00940000160702.b #20	ENSGT00940000153430.a.b.r #22	ENSGT01030000234641.a.b #21	ENSGT00390000014431 #23	ENSGT00730000111063 #24	ENSGT00950000183135.B.b	ENSGT00390000000403 #26	ENSGT00390000016475.e.a.a.a	ENSGT00940000162008 #27	ENSGT00390000008978.q.a #28	ENSGT00390000010476	ENSGT00940000158482 #29	ENSGT00940000157425.B #31	ENSGT00390000017746 #32	ENSGT00940000157593 #33	ENSGT00700000104522 #34	ENSGT00940000161152 #35
Pan	ANCESTRAL SPECIES	16	ENSGT00390000011476	ENSGT00500000044926.b	ENSGT00940000155447	ENSGT00390000004068	ENSGT00940000158288 #9	ENSGT00940000156602 #10	ENSGT00390000017265 #11	ENSGT00940000155996 #12	ENSGT00940000154259.k.a	ENSGT00940000159204 #13	ENSGT00500000044913.b	ENSGT00940000160482 #16	ENSGT00910000147084	ENSGT00940000161426 #19	ENSGT00940000160702.b #20	ENSGT00940000153430.a.b.r #22	ENSGT01030000234641.a.b #21	ENSGT00390000014431 #23	ENSGT00730000111063 #24	ENSGT00950000183135.B.b	ENSGT00390000000403 #26	ENSGT00390000016475.e.a.a.a	ENSGT00940000162008 #27	ENSGT00390000008978.q.a #28	ENSGT00390000010476	ENSGT00940000158482 #29	ENSGT00940000157425.B #31	ENSGT00390000017746 #32	ENSGT00940000157593 #33	ENSGT00700000104522 #34	ENSGT00940000161152 #35
Chimpanzee	MODERN SPECIES	1	ATE1 (ENSPTRG00000003005)	FGFR2 (ENSPTRG00000003003)	WDR11 (ENSPTRG00000003004)	PLPP4 (ENSPTRG00000029684) #9	ENSPTRG00000048120	SEC23IP (ENSPTRG00000003001) #10	MCMBP (ENSPTRG00000003000) #11	INPP5F (ENSPTRG00000022873) #12	ENSPTRG00000051748	BAG3 (ENSPTRG00000002998) #13	ENSPTRG00000040193	ENSPTRG00000046181	TIAL1 (ENSPTRG00000002996) #16	RGS10 (ENSPTRG00000002995) #19	GRK5 (ENSPTRG00000002993) #20	PRDX3 (ENSPTRG00000002992) #22	SFXN4 (ENSPTRG00000002990) #21	DENND10 (ENSPTRG00000002989) #23	EIF3A (ENSPTRG00000002988) #24	NANOS1 (ENSPTRG00000013314)	CACUL1 (ENSPTRG00000002986) #26	ENSPTRG00000049526	PRLHR (ENSPTRG00000002985) #27	FAM204A (ENSPTRG00000002984) #28	ENSPTRG00000046689	RAB11FIP2 (ENSPTRG00000002982) #29	EMX2 (ENSPTRG00000002981) #31	PDZD8 (ENSPTRG00000002980) #32	SLC18A2 (ENSPTRG00000002979) #33	KCNK18 (ENSPTRG00000002978) #34	VAX1 (ENSPTRG00000045431) #35
Bonobo	MODERN SPECIES	1	ENSPPAG00000035638	ATE1 (ENSPPAG00000039734)	FGFR2 (ENSPPAG00000034123)	WDR11 (ENSPPAG00000034753)	PLPP4 (ENSPPAG00000040406) #9	ENSPPAG00000035383	SEC23IP (ENSPPAG00000021343) #10	MCMBP (ENSPPAG00000041372) #11	INPP5F (ENSPPAG00000028448) #12	ENSPPAG00000030508	BAG3 (ENSPPAG00000042723) #13	ENSPPAG00000036209	TIAL1 (ENSPPAG00000043098) #16	RGS10 (ENSPPAG00000028477) #19	GRK5 (ENSPPAG00000028552) #20	PRDX3 (ENSPPAG00000029603) #22	SFXN4 (ENSPPAG00000035782) #21	DENND10 (ENSPPAG00000027869) #23	EIF3A (ENSPPAG00000028284) #24	ENSPPAG00000033515 #26	PRLHR (ENSPPAG00000002478) #27	FAM204A (ENSPPAG00000013679) #28	ENSPPAG00000011351	RAB11FIP2 (ENSPPAG00000014110) #29	EMX2 (ENSPPAG00000028273) #31	PDZD8 (ENSPPAG00000043171) #32	SLC18A2 (ENSPPAG00000018149) #33	KCNK18 (ENSPPAG00000042750) #34	ENSPPAG00000029176 #35	SHTN1 (ENSPPAG00000042929) #37	ENO4 (ENSPPAG00000035101)
Human	MODERN SPECIES	1	PLEKHA1 (ENSG00000107679)	BTBD16 (ENSG00000138152)	TACC2 (ENSG00000138162)	NSMCE4A (ENSG00000107672)	ATE1 (ENSG00000107669)	FGFR2 (ENSG00000066468)	WDR11 (ENSG00000120008)	PLPP4 (ENSG00000203805) #9	SEC23IP (ENSG00000107651) #10	MCMBP (ENSG00000197771) #11	INPP5F (ENSG00000198825) #12	BAG3 (ENSG00000151929) #13	TIAL1 (ENSG00000151923) #16	RGS10 (ENSG00000148908) #19	GRK5 (ENSG00000198873) #20	PRDX3 (ENSG00000165672) #22	SFXN4 (ENSG00000183605) #21	DENND10 (ENSG00000119979) #23	EIF3A (ENSG00000107581) #24	NANOS1 (ENSG00000188613)	CACUL1 (ENSG00000151893) #26	PRLHR (ENSG00000119973) #27	FAM204A (ENSG00000165669) #28	RAB11FIP2 (ENSG00000107560) #29	EMX2 (ENSG00000170370) #31	PDZD8 (ENSG00000165650) #32	SLC18A2 (ENSG00000165646) #33	KCNK18 (ENSG00000186795) #34	VAX1 (ENSG00000148704) #35	SHTN1 (ENSG00000187164) #37	ENO4 (ENSG00000188316)
Gorilla	MODERN SPECIES	1	ENSGGOG00000024510	WDR11 (ENSGGOG00000003069)	ENSGGOG00000011322 #9	ENSGGOG00000025941	SEC23IP (ENSGGOG00000003921) #10	MCMBP (ENSGGOG00000006006) #11	INPP5F (ENSGGOG00000005991) #12	ENSGGOG00000022627	BAG3 (ENSGGOG00000011503) #13	ENSGGOG00000024741 #15	TIAL1 (ENSGGOG00000001816) #16	ENSGGOG00000041190	RGS10 (ENSGGOG00000008414) #19	ENSGGOG00000042904	GRK5 (ENSGGOG00000011618) #20	PRDX3 (ENSGGOG00000026364) #22	SFXN4 (ENSGGOG00000036305) #21	DENND10 (ENSGGOG00000000888) #23	EIF3A (ENSGGOG00000000036) #24	CACUL1 (ENSGGOG00000001450) #26	ENSGGOG00000028013	PRLHR (ENSGGOG00000000672) #27	FAM204A (ENSGGOG00000010566) #28	ENSGGOG00000037446	RAB11FIP2 (ENSGGOG00000007213) #29	EMX2 (ENSGGOG00000016667) #31	PDZD8 (ENSGGOG00000002530) #32	SLC18A2 (ENSGGOG00000004379) #33	KCNK18 (ENSGGOG00000027386) #34	ENSGGOG00000037135 #35	SHTN1 (ENSGGOG00000012508) #37
Orangutan	MODERN SPECIES	1	ATE1 (ENSPPYG00000002711)	FGFR2 (ENSPPYG00000002710)	WDR11 (ENSPPYG00000029859)	PLPP4 (ENSPPYG00000002709) #9	ENSPPYG00000030022	SEC23IP (ENSPPYG00000002708) #10	MCMBP (ENSPPYG00000002707) #11	INPP5F (ENSPPYG00000002706) #12	ENSPPYG00000031900	BAG3 (ENSPPYG00000002705) #13	TIAL1 (ENSPPYG00000002703) #16	ENSPPYG00000037360	ENSPPYG00000002702 #19	ENSPPYG00000036653	GRK5 (ENSPPYG00000002701) #20	PRDX3 (ENSPPYG00000002700) #22	SFXN4 (ENSPPYG00000002699) #21	DENND10 (ENSPPYG00000002698) #23	EIF3A (ENSPPYG00000002697) #24	NANOS1 (ENSPPYG00000036681)	CACUL1 (ENSPPYG00000031630) #26	PRLHR (ENSPPYG00000002695) #27	FAM204A (ENSPPYG00000002694) #28	ENSPPYG00000002693	RAB11FIP2 (ENSPPYG00000002692) #29	ENSPPYG00000031065 #31	PDZD8 (ENSPPYG00000039905) #32	SLC18A2 (ENSPPYG00000002690) #33	KCNK18 (ENSPPYG00000002689) #34	VAX1 (ENSPPYG00000002688) #35	SHTN1 (ENSPPYG00000002687) #37
Gibbon	MODERN SPECIES	18	BTBD16 (ENSNLEG00000016981)	TACC2 (ENSNLEG00000016926)	NSMCE4A (ENSNLEG00000016919)	ATE1 (ENSNLEG00000016908)	FGFR2 (ENSNLEG00000016854)	WDR11 (ENSNLEG00000016815)	PLPP4 (ENSNLEG00000028427) #9	SEC23IP (ENSNLEG00000016780) #10	MCMBP (ENSNLEG00000016770) #11	INPP5F (ENSNLEG00000016753) #12	ENSNLEG00000029480	BAG3 (ENSNLEG00000016750) #13	TIAL1 (ENSNLEG00000016743) #16	RGS10 (ENSNLEG00000035071) #19	GRK5 (ENSNLEG00000016723) #20	PRDX3 (ENSNLEG00000035268) #22	SFXN4 (ENSNLEG00000016685) #21	DENND10 (ENSNLEG00000032443) #23	EIF3A (ENSNLEG00000016648) #24	CACUL1 (ENSNLEG00000033485) #26	ENSNLEG00000036076	PRLHR (ENSNLEG00000016637) #27	FAM204A (ENSNLEG00000016624) #28	ENSNLEG00000031592	ENSNLEG00000016621	RAB11FIP2 (ENSNLEG00000016607) #29	EMX2 (ENSNLEG00000028193) #31	ENSNLEG00000027748 #32	SLC18A2 (ENSNLEG00000016568) #33	KCNK18 (ENSNLEG00000016567) #34	VAX1 (ENSNLEG00000032960) #35
Platyrrhini	ANCESTRAL SPECIES	14	ENSGT00940000155447	ENSGT00390000004068	ENSGT00940000158288 #9	ENSGT00940000156602 #10	ENSGT00390000017265 #11	ENSGT00940000155996 #12	ENSGT00940000154259.k.a.a	ENSGT00940000159204 #13	ENSGT00500000044913.b	ENSGT00940000160482 #16	ENSGT00910000147084	ENSGT00910000148125	ENSGT00940000161426 #19	ENSGT00910000148293	ENSGT00940000160702.b #20	ENSGT00940000153430.a.b.r #22	ENSGT01030000234641.a.b #21	ENSGT00390000014431 #23	ENSGT00730000111063 #24	ENSGT00950000183135.B.b	ENSGT00390000000403 #26	ENSGT00940000162008 #27	ENSGT00390000008978 #28	ENSGT00390000010476	ENSGT00940000158482 #29	ENSGT00910000147822	ENSGT00940000157425.B #31	ENSGT00390000017746 #32	ENSGT00940000157593 #33	ENSGT00700000104522 #34	ENSGT00940000161152 #35
Cebidae	ANCESTRAL SPECIES	17	ENSGT00500000044926.b	ENSGT00940000155447	ENSGT00390000004068	ENSGT00940000158288 #9	ENSGT00940000156602 #10	ENSGT00390000017265 #11	ENSGT00940000155996 #12	ENSGT00940000154259.k.a.a	ENSGT00940000159204 #13	ENSGT00500000044913.b	ENSGT00940000160482 #16	ENSGT00910000147084	ENSGT00910000148125	ENSGT00940000161426 #19	ENSGT00940000160702.b #20	ENSGT00940000153430.a.b.r #22	ENSGT01030000234641.a.b #21	ENSGT00390000014431 #23	ENSGT00730000111063 #24	ENSGT00950000183135.B.b	ENSGT00390000000403 #26	ENSGT00940000162008 #27	ENSGT00390000008978 #28	ENSGT00390000010476	ENSGT00940000158482 #29	ENSGT00910000147822	ENSGT00940000157425.B #31	ENSGT00390000017746 #32	ENSGT00940000157593 #33	ENSGT00700000104522 #34	ENSGT00940000161152 #35
Marmoset	MODERN SPECIES	3	PLPP4 (ENSCJAG00000006402) #9	ENSCJAG00000013460	ENSCJAG00000087246	BAG3 (ENSCJAG00000020374) #13	ENSCJAG00000020378	INPP5F (ENSCJAG00000020379) #12	MCMBP (ENSCJAG00000020390) #11	SEC23IP (ENSCJAG00000019189) #10	ENSCJAG00000086412	ENSCJAG00000069509	ENSCJAG00000059975	TIAL1 (ENSCJAG00000019682) #16	ENSCJAG00000061556	RGS10 (ENSCJAG00000019675) #19	GRK5 (ENSCJAG00000019648) #20	PRDX3 (ENSCJAG00000019636) #22	SFXN4 (ENSCJAG00000034798) #21	DENND10 (ENSCJAG00000019618) #23	EIF3A (ENSCJAG00000019595) #24	NANOS1 (ENSCJAG00000044351)	ENSCJAG00000063855	CACUL1 (ENSCJAG00000019578) #26	PRLHR (ENSCJAG00000019575) #27	ENSCJAG00000079572	ENSCJAG00000073481	FAM204A (ENSCJAG00000019565) #28	RAB11FIP2 (ENSCJAG00000019543) #29	EMX2 (ENSCJAG00000038805) #31	PDZD8 (ENSCJAG00000019527) #32	SLC18A2 (ENSCJAG00000019511) #33	KCNK18 (ENSCJAG00000019505) #34
Cebidae_a	ANCESTRAL SPECIES	13	ENSGT00390000011476	ENSGT00500000044926.b	ENSGT00940000155447	ENSGT00390000004068	ENSGT00940000158288 #9	ENSGT00940000156602 #10	ENSGT00390000017265 #11	ENSGT00940000155996 #12	ENSGT00940000159204 #13	ENSGT00500000044913.b	ENSGT00940000160482 #16	ENSGT00910000147084	ENSGT00910000148125	ENSGT00940000161426 #19	ENSGT00940000160702.b #20	ENSGT00940000153430.a.b.r #22	ENSGT01030000234641.a.b #21	ENSGT00390000014431 #23	ENSGT00730000111063 #24	ENSGT00950000183135.B.b	ENSGT00390000000403 #26	ENSGT00940000162008 #27	ENSGT00390000008978 #28	ENSGT00390000010476	ENSGT00940000158482 #29	ENSGT00910000147822	ENSGT00940000157425.B #31	ENSGT00390000017746 #32	ENSGT00940000157593 #33	ENSGT00700000104522 #34	ENSGT00940000161152 #35
Capuchin	MODERN SPECIES	406				SEC23IP (ENSCCAG00000033636) #10	MCMBP (ENSCCAG00000025423) #11	INPP5F (ENSCCAG00000007215) #12	ENSCCAG00000027103	ENSCCAG00000002687	BAG3 (ENSCCAG00000037916) #13	ENSCCAG00000016611	TIAL1 (ENSCCAG00000002561) #16	ENSCCAG00000020677	ENSCCAG00000026113	RGS10 (ENSCCAG00000021937) #19	GRK5 (ENSCCAG00000030340) #20	PRDX3 (ENSCCAG00000035710) #22	SFXN4 (ENSCCAG00000026727) #21	DENND10 (ENSCCAG00000026121) #23	EIF3A (ENSCCAG00000031764) #24	NANOS1 (ENSCCAG00000009164)	ENSCCAG00000014873	CACUL1 (ENSCCAG00000028067) #26	FAM204A (ENSCCAG00000037059) #28	ENSCCAG00000033561	RAB11FIP2 (ENSCCAG00000026414) #29	EMX2 (ENSCCAG00000034395) #31	PDZD8 (ENSCCAG00000022849) #32	SLC18A2 (ENSCCAG00000034263) #33
Bolivian squirrel monkey	MODERN SPECIES	47	NSMCE4A (ENSSBOG00000034475)	ATE1 (ENSSBOG00000033557)	FGFR2 (ENSSBOG00000016345)	WDR11 (ENSSBOG00000034391)	PLPP4 (ENSSBOG00000027942) #9	ENSSBOG00000028957	SEC23IP (ENSSBOG00000028088) #10	MCMBP (ENSSBOG00000029485) #11	INPP5F (ENSSBOG00000034456) #12	BAG3 (ENSSBOG00000033183) #13	TIAL1 (ENSSBOG00000028408) #16	ENSSBOG00000028139	RGS10 (ENSSBOG00000023795) #19	GRK5 (ENSSBOG00000025587) #20	ENSSBOG00000034959	PRDX3 (ENSSBOG00000033406) #22	SFXN4 (ENSSBOG00000036043) #21	DENND10 (ENSSBOG00000019475) #23	EIF3A (ENSSBOG00000011487) #24	CACUL1 (ENSSBOG00000024256) #26	PRLHR (ENSSBOG00000018248) #27	FAM204A (ENSSBOG00000035369) #28	ENSSBOG00000025186	RAB11FIP2 (ENSSBOG00000026692) #29	ENSSBOG00000034022	EMX2 (ENSSBOG00000018880) #31	PDZD8 (ENSSBOG00000034205) #32	SLC18A2 (ENSSBOG00000023886) #33	KCNK18 (ENSSBOG00000024273) #34	VAX1 (ENSSBOG00000030377) #35	SHTN1 (ENSSBOG00000034777) #37
Mas night monkey	DUPLICATION
Mas night monkey	MODERN SPECIES	947				SEC23IP (ENSANAG00000033397) #10	MCMBP (ENSANAG00000030926) #11	INPP5F (ENSANAG00000022163) #12	ENSANAG00000025972	BAG3 (ENSANAG00000030494) #13	ENSANAG00000035957	ENSANAG00000037780	TIAL1 (ENSANAG00000034445) #16	ENSANAG00000035819	RGS10 (ENSANAG00000037765) #19	ENSANAG00000036161	GRK5 (ENSANAG00000037217) #20	ENSANAG00000023590 #22	SFXN4 (ENSANAG00000033027) #21	DENND10 (ENSANAG00000031098) #23	EIF3A (ENSANAG00000022156) #24	CACUL1 (ENSANAG00000034813) #26	PRLHR (ENSANAG00000009074) #27	FAM204A (ENSANAG00000023847) #28	ENSANAG00000035863	RAB11FIP2 (ENSANAG00000020732) #29	EMX2 (ENSANAG00000019103) #31	PDZD8 (ENSANAG00000034552) #32	SLC18A2 (ENSANAG00000024279) #33	KCNK18 (ENSANAG00000021900) #34	VAX1 (ENSANAG00000025818) #35	SHTN1 (ENSANAG00000022749) #37	ENO4 (ENSANAG00000028750)
Mas night monkey	MODERN SPECIES	966	KIF20A (ENSANAG00000034059)	CDC23 (ENSANAG00000025991)	GFRA3 (ENSANAG00000023740)	CDC25C (ENSANAG00000023585)	FAM53C (ENSANAG00000021866)	KDM3B (ENSANAG00000033645)	REEP2 (ENSANAG00000025663)	EGR1 (ENSANAG00000023520)	ENSANAG00000023552	ENSANAG00000022006	ENSANAG00000025638	HSPA9 (ENSANAG00000026528)	ENSANAG00000021083	LRRTM2 (ENSANAG00000023394)	ENSANAG00000029972	ENSANAG00000020827 #22	SIL1 (ENSANAG00000019593)	ENSANAG00000026162	ENSANAG00000020892	ENSANAG00000024255	ENSANAG00000022951	ENSANAG00000037702	SLC23A1 (ENSANAG00000021838)	MZB1 (ENSANAG00000021075)	SPATA24 (ENSANAG00000037308)	DNAJC18 (ENSANAG00000021021)	ECSCR (ENSANAG00000037645)	SMIM33 (ENSANAG00000020599)	STING1 (ENSANAG00000037295)	ENSANAG00000037235	CXXC5 (ENSANAG00000037158)
Simiiformes	ANCESTRAL SPECIES																	ENSGT00940000153430.a.b.q ##22
Catarrhini	ANCESTRAL SPECIES																	ENSGT00940000153430.a.b.q ##22
Cercopithecidae	ANCESTRAL SPECIES	24	ENSGT00510000048276	ENSGT00950000182935.B.b.c	ENSGT00390000017606.a.a.i.a.b.a.b.b	ENSGT00940000157367	ENSGT00940000158365	ENSGT00940000162772	ENSGT00940000161999.t.a	ENSGT00940000162695.e	ENSGT00940000162695.f	ENSGT00940000164701	ENSGT00940000154405.a.a	ENSGT00940000154405.a.b	ENSGT00910000147154	ENSGT00940000161265	ENSGT00940000160024	ENSGT00940000153430.a.b.q ##22	ENSGT00940000156054	ENSGT00390000009228.b	ENSGT00390000016475.e.b	ENSGT00940000153137.a.a.g	ENSGT00940000162433	ENSGT00760000119398	ENSGT00940000160049	ENSGT00910000147308	ENSGT00390000004010.a.b.b	ENSGT01030000234586.A.b	ENSGT00940000153536.a.a	ENSGT00940000153861.b	ENSGT00940000161112	ENSGT00940000158756	ENSGT00940000153560.b.b.b
Rhinopithecus	ANCESTRAL SPECIES	3	ENSGT00910000147557	ENSGT00510000048276	ENSGT00950000182935.B.b.c	ENSGT00390000017606.a.a.i.a.b.a.b.b	ENSGT00940000157367	ENSGT00940000158365	ENSGT00940000162772	ENSGT00940000161999.t.a	ENSGT00940000162695.e.b	ENSGT00940000162695.f	ENSGT00940000164701	ENSGT00940000154405.a.a	ENSGT00940000154405.a.b	ENSGT00940000161265	ENSGT00940000160024	ENSGT00940000153430.a.b.q ##22	ENSGT00940000156054	ENSGT00910000147211	ENSGT00390000009228.b	ENSGT00390000016475.e.b	ENSGT00940000153137.a.a.g	ENSGT00940000162433	ENSGT00760000119398	ENSGT00940000160049	ENSGT00910000147308	ENSGT00390000004010.a.b.b	ENSGT01030000234586.A.b	ENSGT00940000153536.a.a	ENSGT00940000153861.b	ENSGT00940000161112	ENSGT00940000158756
Golden snub-nosed monkey	MODERN SPECIES	2721	MGAT3 (ENSRROG00000021928)	ENSRROG00000040942	TAB1 (ENSRROG00000032120)	SYNGR1 (ENSRROG00000029051)	ENSRROG00000044143	PDGFB (ENSRROG00000007216)	CBX7 (ENSRROG00000033680)	APOBEC3H (ENSRROG00000024699)	APOBEC3C (ENSRROG00000029045)	ENSRROG00000028557	APOBEC3G (ENSRROG00000028773)	CBX6 (ENSRROG00000040472)	NPTXR (ENSRROG00000038554)	DNAL4 (ENSRROG00000035941)	SUN2 (ENSRROG00000038392)	ENSRROG00000033588 ##22	GTPBP1 (ENSRROG00000044733)	ENSRROG00000042829	JOSD1 (ENSRROG00000031876)	TOMM22 (ENSRROG00000042007)	CBY1 (ENSRROG00000040566)	FAM227A (ENSRROG00000044925)	DMC1 (ENSRROG00000043002)	ENSRROG00000037265	DDX17 (ENSRROG00000045378)	KDELR3 (ENSRROG00000030931)	KCNJ4 (ENSRROG00000008366)	CSNK1E (ENSRROG00000040037)	TMEM184B (ENSRROG00000040391)	MAFF (ENSRROG00000042813)	ENSRROG00000019366
Cercopithecinae	ANCESTRAL SPECIES																	ENSGT00940000153430.a.b.q ##22
Cercopithecinae_a	ANCESTRAL SPECIES																	ENSGT00940000153430.a.b.q ##22
Cercopithecinae_b	ANCESTRAL SPECIES																	ENSGT00940000153430.a.b.q ##22
Olive baboon	MODERN SPECIES	2	TACC2 (ENSPANG00000020477)	NSMCE4A (ENSPANG00000020473)	ATE1 (ENSPANG00000020496)	FGFR2 (ENSPANG00000020505)	ENSPANG00000044749	ENSPANG00000038420	WDR11 (ENSPANG00000020499)	PLPP4 (ENSPANG00000020515) #9	SEC23IP (ENSPANG00000020516) #10	MCMBP (ENSPANG00000020524) #11	INPP5F (ENSPANG00000020522) #12	BAG3 (ENSPANG00000020521) #13	TIAL1 (ENSPANG00000020518) #16	RGS10 (ENSPANG00000020561) #19	GRK5 (ENSPANG00000020570) #20	ENSPANG00000048950 ##22	SFXN4 (ENSPANG00000020612) #21	DENND10 (ENSPANG00000020611) #23	EIF3A (ENSPANG00000020615) #24	NANOS1 (ENSPANG00000000318)	CACUL1 (ENSPANG00000020622) #26	PRLHR (ENSPANG00000035063) #27	ENSPANG00000037634	FAM204A (ENSPANG00000020620) ##28	ENSPANG00000037544	ENSPANG00000047195	RAB11FIP2 (ENSPANG00000020617) #29	EMX2 (ENSPANG00000020616) #31	PDZD8 (ENSPANG00000020702) #32	SLC18A2 (ENSPANG00000020706) #33	KCNK18 (ENSPANG00000020705) #34
Hominoidea	ANCESTRAL SPECIES																	ENSGT00940000153430.a.b.q ##22
Hominidae	ANCESTRAL SPECIES																	ENSGT00940000153430.a.b.q ##22
Homo/Pan/Gorilla group	ANCESTRAL SPECIES																	ENSGT00940000153430.a.b.q ##22
Homo/Pan group	ANCESTRAL SPECIES	20	ENSGT00950000182935.B.b.c	ENSGT00390000017606.a.a.i.a.b.a.b.b	ENSGT00940000157367	ENSGT00940000158365	ENSGT00940000162772	ENSGT00940000161999.t.a	ENSGT00940000162695.e	ENSGT00940000162695.f	ENSGT00940000164701.a	ENSGT00940000154405.a.a	ENSGT00940000154405.a.b	ENSGT00910000147154	ENSGT00940000161265	ENSGT00940000160024	ENSGT00910000148162	ENSGT00940000153430.a.b.q ##22	ENSGT00940000156054	ENSGT00390000009228.b	ENSGT00390000016475.e.b	ENSGT00940000153137.a.a.g	ENSGT00940000162433	ENSGT00760000119398	ENSGT00940000160049	ENSGT00910000147308	ENSGT00390000004010.a.b.b	ENSGT01030000234586.A.b	ENSGT00940000153536.a.a	ENSGT00940000153861.b	ENSGT00940000161112	ENSGT00940000158756	ENSGT00940000153560.b.b.b
Pan	ANCESTRAL SPECIES	23	ENSGT00950000182935.B.b.c	ENSGT00390000017606.a.a.i.a.b.a.b.a.b.b	ENSGT00940000157367	ENSGT00940000158365	ENSGT00940000162772	ENSGT00940000161999.t.a	ENSGT00940000162695.e	ENSGT00940000162695.f	ENSGT00940000164701.a	ENSGT00940000154405.a.a	ENSGT00940000154405.a.b	ENSGT00910000147154	ENSGT00940000161265	ENSGT00940000160024	ENSGT00910000148162	ENSGT00940000153430.a.b.q ##22	ENSGT00940000156054	ENSGT00390000009228.b	ENSGT00390000016475.e.b	ENSGT00940000153137.a.a.g	ENSGT00940000162433	ENSGT00760000119398	ENSGT00940000160049	ENSGT00910000147308	ENSGT00390000004010.a.b.b	ENSGT01030000234586.A.b	ENSGT00940000153536.a.a	ENSGT00940000153861.b	ENSGT00940000161112	ENSGT00940000158756	ENSGT00940000153560.b.b.b
Bonobo	MODERN SPECIES	13	RPL3 (ENSPPAG00000037466)	PDGFB (ENSPPAG00000029810)	CBX7 (ENSPPAG00000028315)	APOBEC3H (ENSPPAG00000036522)	ENSPPAG00000033277	ENSPPAG00000031519	ENSPPAG00000028218	APOBEC3C (ENSPPAG00000014118)	APOBEC3B (ENSPPAG00000009288)	CBX6 (ENSPPAG00000037312)	ENSPPAG00000036694	ENSPPAG00000035771	DNAL4 (ENSPPAG00000031504)	SUN2 (ENSPPAG00000038642)	ENSPPAG00000037574	ENSPPAG00000035397 ##22	GTPBP1 (ENSPPAG00000024682)	JOSD1 (ENSPPAG00000011451)	TOMM22 (ENSPPAG00000033147)	ENSPPAG00000031485	FAM227A (ENSPPAG00000025902)	DMC1 (ENSPPAG00000039727)	ENSPPAG00000005436	DDX17 (ENSPPAG00000042301)	KDELR3 (ENSPPAG00000029491)	KCNJ4 (ENSPPAG00000021519)	CSNK1E (ENSPPAG00000034621)	TMEM184B (ENSPPAG00000025777)	ENSPPAG00000027986	PLA2G6 (ENSPPAG00000028438)	BAIAP2L2 (ENSPPAG00000033483)
Chimpanzee	MODERN SPECIES	13	SYNGR1 (ENSPTRG00000041182)	RPL3 (ENSPTRG00000049360)	PDGFB (ENSPTRG00000014392)	CBX7 (ENSPTRG00000014391)	APOBEC3H (ENSPTRG00000014390)	APOBEC3G (ENSPTRG00000014387)	APOBEC3C (ENSPTRG00000014385)	APOBEC3D (ENSPTRG00000041588)	ENSPTRG00000014382	APOBEC3B (ENSPTRG00000014384)	CBX6 (ENSPTRG00000051110)	ENSPTRG00000048123	NPTXR (ENSPTRG00000014380)	DNAL4 (ENSPTRG00000014379)	SUN2 (ENSPTRG00000023985)	ENSPTRG00000043000 ##22	GTPBP1 (ENSPTRG00000014376)	JOSD1 (ENSPTRG00000014375)	TOMM22 (ENSPTRG00000014374)	CBY1 (ENSPTRG00000014373)	FAM227A (ENSPTRG00000014372)	DMC1 (ENSPTRG00000014370)	ENSPTRG00000051975	DDX17 (ENSPTRG00000014369)	KDELR3 (ENSPTRG00000014367)	KCNJ4 (ENSPTRG00000050908)	CSNK1E (ENSPTRG00000014365)	TMEM184B (ENSPTRG00000022822)	MAFF (ENSPTRG00000029431)	PLA2G6 (ENSPTRG00000014362)	BAIAP2L2 (ENSPTRG00000014361)
Gibbon	MODERN SPECIES	16					PTPRU (ENSNLEG00000031816)	ENSNLEG00000009932	SRSF4 (ENSNLEG00000009916)	EPB41 (ENSNLEG00000009867)	ENSNLEG00000009864	YTHDF2 (ENSNLEG00000009856)	GMEB1 (ENSNLEG00000009837)	ENSNLEG00000009827	ENSNLEG00000018583	TRNAU1AP (ENSNLEG00000009822)	RCC1 (ENSNLEG00000009802)	ENSNLEG00000029704 ##22	ENSNLEG00000034272	ENSNLEG00000009792	MED18 (ENSNLEG00000009789)	SESN2 (ENSNLEG00000009780)	ATP5IF1 (ENSNLEG00000032433)	DNAJC8 (ENSNLEG00000009762)	PTAFR (ENSNLEG00000009760)	EYA3 (ENSNLEG00000009724)	XKR8 (ENSNLEG00000009722)	SMPDL3B (ENSNLEG00000009709)	RPA2 (ENSNLEG00000009702)	ENSNLEG00000009697	ENSNLEG00000009695	PPP1R8 (ENSNLEG00000009676)	STX12 (ENSNLEG00000030651)
Platyrrhini	ANCESTRAL SPECIES																	ENSGT00940000153430.a.b.q ##22
Mas night monkey	MODERN SPECIES	527	ENSANAG00000007964	ENSANAG00000023134	OR10G6 (ENSANAG00000033193)	TMEM225 (ENSANAG00000035726)	ZNF202 (ENSANAG00000034002)	SCN3B (ENSANAG00000037873)	ENSANAG00000032228	GRAMD1B (ENSANAG00000019027)	ENSANAG00000028995	CLMP (ENSANAG00000036244)	ENSANAG00000034435	BSX (ENSANAG00000027600)	JHY (ENSANAG00000032921)	CRTAM (ENSANAG00000035170)	UBASH3B (ENSANAG00000020625)	ENSANAG00000035361 ##22	BLID (ENSANAG00000028884)	SORL1 (ENSANAG00000031276)	SC5D (ENSANAG00000031781)	TECTA (ENSANAG00000021954)	TBCEL (ENSANAG00000037781)	GRIK4 (ENSANAG00000029340)	ARHGEF12 (ENSANAG00000035929)	TLCD5 (ENSANAG00000028920)	POU2F3 (ENSANAG00000037801)	OAF (ENSANAG00000028659)	TRIM29 (ENSANAG00000035721)	NECTIN1 (ENSANAG00000037728)	THY1 (ENSANAG00000034071)	USP2 (ENSANAG00000038057)	MFRP (ENSANAG00000021927)
Tarsier	MODERN SPECIES	7109												BAG3 (ENSTSYG00000025987) #13	TIAL1 (ENSTSYG00000004348) #16	RGS10 (ENSTSYG00000008954) #19	GRK5 (ENSTSYG00000005323) #20	PRDX3 (ENSTSYG00000006384) #22	SFXN4 (ENSTSYG00000014016) #21	DENND10 (ENSTSYG00000010153) #23	EIF3A (ENSTSYG00000010443) #24	ENSTSYG00000031848	ENSTSYG00000034685	ENSTSYG00000034422	CACUL1 (ENSTSYG00000008510) #26
Strepsirrhini	ANCESTRAL SPECIES	11	ENSGT00940000161718	ENSGT00940000157052	ENSGT00390000011476	ENSGT00390000016534.B	ENSGT00500000044926	ENSGT00940000155447	ENSGT00390000004068	ENSGT00940000158288 #9	ENSGT00940000156602 #10	ENSGT00390000017265 #11	ENSGT00940000155996 #12	ENSGT00940000159204 #13	ENSGT00940000160482 #16	ENSGT00940000161426 #19	ENSGT00940000160702.b #20	ENSGT00940000153430.a.b #22	ENSGT01030000234641.a.b #21	ENSGT00390000014431 #23	ENSGT00730000111063 #24	ENSGT00950000183135.B.b	ENSGT00390000000403 #26	ENSGT00940000162008 #27	ENSGT00390000008978 #28	ENSGT00940000158482.n #29	ENSGT00940000157425.B #31	ENSGT00390000017746 #32	ENSGT00940000157593 #33	ENSGT00700000104522 #34	ENSGT00940000161152 #35	ENSGT00510000048167.a #37	ENSGT00950000182805.a.b
Lemuriformes	ANCESTRAL SPECIES	7	ENSGT00940000161718	ENSGT00940000157052	ENSGT00390000011476	ENSGT00390000016534.B	ENSGT00500000044926	ENSGT00940000155447	ENSGT00390000004068	ENSGT00940000158288 #9	ENSGT00940000156602 #10	ENSGT00390000017265 #11	ENSGT00940000155996 #12	ENSGT00940000159204 #13	ENSGT00940000160482 #16	ENSGT00940000161426 #19	ENSGT00940000160702.b #20	ENSGT00940000153430.a.b #22	ENSGT01030000234641.a.b #21	ENSGT00390000014431 #23	ENSGT00730000111063 #24	ENSGT00950000183135.B.b	ENSGT00390000000403 #26	ENSGT00940000162008 #27	ENSGT00390000008978 #28	ENSGT00940000158482.n #29	ENSGT00940000157425.B #31	ENSGT00390000017746 #32	ENSGT00940000157593 #33	ENSGT00700000104522 #34	ENSGT00940000161152 #35	ENSGT00510000048167.a #37	ENSGT00950000182805.a.b
Lemuriformes_a	ANCESTRAL SPECIES	42	ENSGT00940000161718	ENSGT00940000157052	ENSGT00390000011476	ENSGT00390000016534.B	ENSGT00500000044926	ENSGT00940000155447	ENSGT00390000004068	ENSGT00940000158288 #9	ENSGT00940000156602 #10	ENSGT00390000017265 #11	ENSGT00940000155996 #12	ENSGT00940000159204 #13	ENSGT00940000160482 #16	ENSGT00940000161426 #19	ENSGT00940000160702.b #20	ENSGT00940000153430.a.b #22	ENSGT01030000234641.a.b #21	ENSGT00390000014431 #23	ENSGT00730000111063 #24	ENSGT00950000183135.B.b	ENSGT00390000000403 #26	ENSGT00940000162008 #27	ENSGT00390000008978 #28	ENSGT00940000158482.n #29	ENSGT00940000157425.B #31	ENSGT00390000017746 #32	ENSGT00940000157593 #33	ENSGT00700000104522 #34	ENSGT00940000161152 #35	ENSGT00510000048167.a #37	ENSGT00950000182805.a.b
Greater bamboo lemur	MODERN SPECIES	193	ENSPSMG00000008723	ENSPSMG00000008933	NSMCE4A (ENSPSMG00000008948)	ENSPSMG00000008956	ATE1 (ENSPSMG00000009100)	FGFR2 (ENSPSMG00000009785)	WDR11 (ENSPSMG00000010687)	PLPP4 (ENSPSMG00000010705) #9	SEC23IP (ENSPSMG00000010732) #10	MCMBP (ENSPSMG00000010773) #11	INPP5F (ENSPSMG00000010892) #12	BAG3 (ENSPSMG00000010989) #13	TIAL1 (ENSPSMG00000011113) #16	ENSPSMG00000011218	GRK5 (ENSPSMG00000011313) #20	PRDX3 (ENSPSMG00000011358) #22	SFXN4 (ENSPSMG00000011378) #21	DENND10 (ENSPSMG00000011392) #23	EIF3A (ENSPSMG00000011410) #24	NANOS1 (ENSPSMG00000011420)
Coquerels sifaka	MODERN SPECIES	258	HTRA1 (ENSPCOG00000021590)	PLEKHA1 (ENSPCOG00000027097)	BTBD16 (ENSPCOG00000020204)	ENSPCOG00000026897	NSMCE4A (ENSPCOG00000011420)	ATE1 (ENSPCOG00000026224)	FGFR2 (ENSPCOG00000027873)	WDR11 (ENSPCOG00000019354)	PLPP4 (ENSPCOG00000025706) #9	MCMBP (ENSPCOG00000020444) #11	INPP5F (ENSPCOG00000015152) #12	BAG3 (ENSPCOG00000027192) #13	TIAL1 (ENSPCOG00000018990) #16	RGS10 (ENSPCOG00000020094) #19	GRK5 (ENSPCOG00000022845) #20	PRDX3 (ENSPCOG00000024919) #22	SFXN4 (ENSPCOG00000027384) #21	DENND10 (ENSPCOG00000000559) #23	EIF3A (ENSPCOG00000026400) #24	NANOS1 (ENSPCOG00000009467)	CACUL1 (ENSPCOG00000020700) #26	FAM204A (ENSPCOG00000022324) #28	RAB11FIP2 (ENSPCOG00000024340) #29	EMX2 (ENSPCOG00000026272) #31	PDZD8 (ENSPCOG00000007150) #32	SLC18A2 (ENSPCOG00000024529) #33	KCNK18 (ENSPCOG00000020687) #34	VAX1 (ENSPCOG00000027093) #35	SHTN1 (ENSPCOG00000026334) #37	ENO4 (ENSPCOG00000016591)
Mouse lemur	MODERN SPECIES	6	BTBD16 (ENSMICG00000009849)	TACC2 (ENSMICG00000009830)	NSMCE4A (ENSMICG00000042455)	ATE1 (ENSMICG00000009823)	FGFR2 (ENSMICG00000000424)	WDR11 (ENSMICG00000008892)	PLPP4 (ENSMICG00000008887) #9	ENSMICG00000037953	SEC23IP (ENSMICG00000007551) #10	MCMBP (ENSMICG00000007540) #11	INPP5F (ENSMICG00000007525) #12	BAG3 (ENSMICG00000027251) #13	TIAL1 (ENSMICG00000037857) #16	ENSMICG00000005524	GRK5 (ENSMICG00000007635) #20	PRDX3 (ENSMICG00000007627) #22	SFXN4 (ENSMICG00000007614) #21	DENND10 (ENSMICG00000026438) #23	EIF3A (ENSMICG00000007588) #24	CACUL1 (ENSMICG00000007500) #26	ENSMICG00000026357	FAM204A (ENSMICG00000046536) #28	RAB11FIP2 (ENSMICG00000001976) #29	EMX2 (ENSMICG00000015676) #31	PDZD8 (ENSMICG00000032374) #32	SLC18A2 (ENSMICG00000047075) #33	KCNK18 (ENSMICG00000015645) #34	VAX1 (ENSMICG00000036933) #35	SHTN1 (ENSMICG00000015629) #37	ENO4 (ENSMICG00000015619)	HSPA12A (ENSMICG00000015608)
Bushbaby	DUPLICATION
Bushbaby	MODERN SPECIES	292												ENSOGAG00000034614	ANXA10 (ENSOGAG00000007053)	SPOCK3 (ENSOGAG00000002571)	TLL1 (ENSOGAG00000011582)	ENSOGAG00000024583 #22	CPE (ENSOGAG00000008219)	ENSOGAG00000009281	KLHL2 (ENSOGAG00000009276)	TMEM192 (ENSOGAG00000013815)	TRIM75 (ENSOGAG00000013813)
Bushbaby	MODERN SPECIES	136	TACC2 (ENSOGAG00000010030)	NSMCE4A (ENSOGAG00000010026)	ENSOGAG00000031150	ATE1 (ENSOGAG00000010023)	FGFR2 (ENSOGAG00000012206)	WDR11 (ENSOGAG00000012465)	PLPP4 (ENSOGAG00000016998) #9	SEC23IP (ENSOGAG00000004948) #10	MCMBP (ENSOGAG00000009714) #11	INPP5F (ENSOGAG00000009706) #12	BAG3 (ENSOGAG00000011421) #13	ENSOGAG00000011419	TIAL1 (ENSOGAG00000011417) #16	RGS10 (ENSOGAG00000030571) #19	GRK5 (ENSOGAG00000002075) #20	ENSOGAG00000002074 #22	ENSOGAG00000027987	DENND10 (ENSOGAG00000002070) #23	EIF3A (ENSOGAG00000004580) #24	NANOS1 (ENSOGAG00000033947)	CACUL1 (ENSOGAG00000006769) #26	PRLHR (ENSOGAG00000025256) #27	FAM204A (ENSOGAG00000028541) #28	RAB11FIP2 (ENSOGAG00000012716) #29	EMX2 (ENSOGAG00000007277) #31	PDZD8 (ENSOGAG00000028529) #32	SLC18A2 (ENSOGAG00000034086) #33	KCNK18 (ENSOGAG00000007264) #34	VAX1 (ENSOGAG00000030974) #35	SHTN1 (ENSOGAG00000003447) #37	ENO4 (ENSOGAG00000003444)
Euarchontoglires_A	ANCESTRAL SPECIES	15	ENSGT00940000161718	ENSGT00940000157052	ENSGT00390000011476	ENSGT00390000016534.B	ENSGT00500000044926	ENSGT00940000155447	ENSGT00390000004068	ENSGT00940000158288 #9	ENSGT00940000156602 #10	ENSGT00390000017265 #11	ENSGT00940000155996 #12	ENSGT00940000159204 #13	ENSGT00940000160482 #16	ENSGT00940000161426 #19	ENSGT00940000160702.b #20	ENSGT00940000153430.a.b #22	ENSGT01030000234641.a.b #21	ENSGT00390000014431 #23	ENSGT00730000111063 #24	ENSGT00950000183135.B.b	ENSGT00390000000403 #26	ENSGT00940000162008 #27	ENSGT00390000008978 #28	ENSGT00940000158482 #29	ENSGT00910000147822	ENSGT00940000157425.B #31	ENSGT00390000017746 #32	ENSGT00940000157593 #33	ENSGT00700000104522 #34	ENSGT00940000161152 #35	ENSGT00510000048167.a #37
Tree shrew	MODERN SPECIES	210															GRK5 (ENSTBEG00000011474) #20	PRDX3 (ENSTBEG00000011064) #22	SFXN4 (ENSTBEG00000010813) #21	DENND10 (ENSTBEG00000010597) #23	EIF3A (ENSTBEG00000010162) #24
Glires	ANCESTRAL SPECIES	16	ENSGT00940000161718	ENSGT00940000157052	ENSGT00390000011476	ENSGT00390000016534.B	ENSGT00500000044926	ENSGT00940000155447	ENSGT00390000004068	ENSGT00940000158288 #9	ENSGT00940000156602 #10	ENSGT00390000017265 #11	ENSGT00940000155996 #12	ENSGT00940000159204 #13	ENSGT00940000160482 #16	ENSGT00940000161426 #19	ENSGT00940000160702.b #20	ENSGT00940000153430.a.b #22	ENSGT01030000234641.a.b #21	ENSGT00390000014431 #23	ENSGT00730000111063 #24	ENSGT00950000183135.B.b	ENSGT00390000000403 #26	ENSGT00940000162008 #27	ENSGT00390000008978 #28	ENSGT00940000158482 #29	ENSGT00910000147822	ENSGT00940000157425.B #31	ENSGT00390000017746 #32	ENSGT00940000157593 #33	ENSGT00700000104522 #34	ENSGT00940000161152 #35	ENSGT00510000048167.a #37
Rodentia	ANCESTRAL SPECIES	16	ENSGT00940000161718	ENSGT00940000157052	ENSGT00390000011476	ENSGT00390000016534.B	ENSGT00500000044926	ENSGT00940000155447	ENSGT00390000004068	ENSGT00940000158288 #9	ENSGT00940000156602 #10	ENSGT00390000017265 #11	ENSGT00940000155996 #12	ENSGT00940000159204 #13	ENSGT00940000160482 #16	ENSGT00940000161426 #19	ENSGT00940000160702.b #20	ENSGT00940000153430.a.b #22	ENSGT01030000234641.a.b #21	ENSGT00390000014431 #23	ENSGT00730000111063 #24	ENSGT00950000183135.B.b	ENSGT00390000000403 #26	ENSGT00940000162008 #27	ENSGT00390000008978 #28	ENSGT00940000158482 #29	ENSGT00910000147822	ENSGT00940000157425.B #31	ENSGT00390000017746 #32	ENSGT00940000157593 #33	ENSGT00700000104522 #34	ENSGT00940000161152 #35	ENSGT00510000048167.a #37
Rodentia_B	ANCESTRAL SPECIES	10	ENSGT00940000161718	ENSGT00940000157052	ENSGT00390000011476	ENSGT00390000016534.B	ENSGT00500000044926	ENSGT00940000155447	ENSGT00390000004068	ENSGT00940000158288 #9	ENSGT00940000156602.g.a #10	ENSGT00390000017265 #11	ENSGT00940000155996 #12	ENSGT00940000159204 #13	ENSGT00940000160482 #16	ENSGT00940000161426 #19	ENSGT00940000160702.b #20	ENSGT00940000153430.a.b #22	ENSGT01030000234641.a.b #21	ENSGT00390000014431 #23	ENSGT00730000111063 #24	ENSGT00950000183135.B.b	ENSGT00390000000403 #26	ENSGT00940000162008 #27	ENSGT00390000008978 #28	ENSGT00940000158482 #29	ENSGT00940000157425.B #31	ENSGT00390000017746 #32	ENSGT00940000157593 #33	ENSGT00700000104522 #34	ENSGT00940000161152 #35	ENSGT00510000048167.a #37	ENSGT00950000182805.a.b
Myomorpha	ANCESTRAL SPECIES	1	ENSGT00940000157052	ENSGT00390000011476	ENSGT00390000016534.B	ENSGT00500000044926	ENSGT00940000155447	ENSGT00390000004068	ENSGT00940000158288 #9	ENSGT00940000156602.g.a #10	ENSGT00940000156602.g.b #10	ENSGT00390000017265 #11	ENSGT00940000155996 #12	ENSGT00940000159204 #13	ENSGT00940000160482 #16	ENSGT00940000161426 #19	ENSGT00940000160702.b #20	ENSGT00940000153430.a.b #22	ENSGT01030000234641.a.b #21	ENSGT00390000014431 #23	ENSGT00730000111063 #24	ENSGT00950000183135.B.b	ENSGT00390000000403 #26	ENSGT00940000162008 #27	ENSGT00390000008978 #28	ENSGT00940000158482 #29	ENSGT00940000157425.B #31	ENSGT00390000017746 #32	ENSGT00940000157593 #33	ENSGT00700000104522 #34	ENSGT00940000161152 #35	ENSGT00510000048167.a #37	ENSGT00950000182805.a.b
Muroidea	ANCESTRAL SPECIES	1	ENSGT00940000157052	ENSGT00390000011476	ENSGT00390000016534.B	ENSGT00500000044926	ENSGT00940000155447	ENSGT00390000004068	ENSGT00940000158288 #9	ENSGT00940000156602.g.a #10	ENSGT00940000156602.g.b #10	ENSGT00390000017265 #11	ENSGT00940000155996 #12	ENSGT00940000159204 #13	ENSGT00940000160482 #16	ENSGT00940000161426 #19	ENSGT00940000160702.b #20	ENSGT00940000153430.a.b #22	ENSGT01030000234641.a.b #21	ENSGT00390000014431 #23	ENSGT00730000111063 #24	ENSGT00950000183135.B.b	ENSGT00390000000403 #26	ENSGT00940000162008 #27	ENSGT00390000008978 #28	ENSGT00940000158482 #29	ENSGT00940000157425.B #31	ENSGT00390000017746 #32	ENSGT00940000157593 #33	ENSGT00700000104522 #34	ENSGT00940000161152 #35	ENSGT00510000048167.a #37	ENSGT00950000182805.a.b
Muroidea_A	ANCESTRAL SPECIES																ENSGT00940000160702.b #20	ENSGT00940000153430.a.b #22	ENSGT01030000234641.a.b #21	ENSGT00390000014431 #23	ENSGT00730000111063 #24	ENSGT00950000183135.B.b	ENSGT00390000000403 #26	ENSGT00940000162008 #27	ENSGT00390000008978 #28	ENSGT00940000158482 #29	ENSGT00940000157425.B #31	ENSGT00390000017746 #32	ENSGT00940000157593 #33	ENSGT00700000104522 #34	ENSGT00940000161152 #35	ENSGT00510000048167.a #37	ENSGT00950000182805.a.b
Cricetidae	ANCESTRAL SPECIES	1															ENSGT00940000160702.b #20	ENSGT00940000153430.a.b #22	ENSGT00390000014431 #23	ENSGT00730000111063 #24	ENSGT00950000183135.B.b	ENSGT00390000000403 #26	ENSGT00940000162008 #27	ENSGT00390000008978 #28	ENSGT00940000158482 #29	ENSGT00940000157425.B #31	ENSGT00390000017746 #32	ENSGT00940000157593 #33	ENSGT00700000104522 #34	ENSGT00940000161152 #35	ENSGT00510000048167.a #37	ENSGT00950000182805.a.b	ENSGT00940000154551
Cricetinae	ANCESTRAL SPECIES	2															ENSGT00940000160702.b #20	ENSGT00940000153430.a.b #22	ENSGT00390000014431 #23	ENSGT00730000111063 #24	ENSGT00950000183135.B.b	ENSGT00390000000403 #26	ENSGT00940000162008 #27	ENSGT00390000008978 #28	ENSGT00940000158482 #29	ENSGT00940000157425.B #31	ENSGT00390000017746 #32	ENSGT00940000157593 #33	ENSGT00700000104522 #34	ENSGT00940000161152 #35	ENSGT00510000048167.a #37	ENSGT00950000182805.a.b	ENSGT00940000154551
Chinese hamster chok1gshd	MODERN SPECIES	215														ENSCGRG00001001599	Grk5 (ENSCGRG00001014639) #20	Prdx3 (ENSCGRG00001015353) #22	Dennd10 (ENSCGRG00001016270) #23	Eif3a (ENSCGRG00001003836) #24	Nanos1 (ENSCGRG00001007664)	Cacul1 (ENSCGRG00001010443) #26	Prlhr (ENSCGRG00001015600) #27	ENSCGRG00001012074	Fam204a (ENSCGRG00001012697) #28	Rab11fip2 (ENSCGRG00001013387) #29	ENSCGRG00001014214	Emx2 (ENSCGRG00001014676) #31	Pdzd8 (ENSCGRG00001015249) #32	Slc18a2 (ENSCGRG00001016186) #33	Kcnk18 (ENSCGRG00001016865) #34	Vax1 (ENSCGRG00001017524) #35	Shtn1 (ENSCGRG00001018919) #37
Golden Hamster	MODERN SPECIES	805											ENSMAUG00000001295	ENSMAUG00000004089	ENSMAUG00000016784	ENSMAUG00000021683	Grk5 (ENSMAUG00000000694) #20	Prdx3 (ENSMAUG00000021294) #22	Dennd10 (ENSMAUG00000015359) #23	Nanos1 (ENSMAUG00000021200)	Eif3a (ENSMAUG00000012616) #24	Cacul1 (ENSMAUG00000016607) #26	Prlhr (ENSMAUG00000019749) #27	Fam204a (ENSMAUG00000008150) #28	Rab11fip2 (ENSMAUG00000013610) #29	Emx2 (ENSMAUG00000009270) #31	Pdzd8 (ENSMAUG00000012851) #32	Slc18a2 (ENSMAUG00000009506) #33	Vax1 (ENSMAUG00000010122) #35	ENSMAUG00000012535 #37	Eno4 (ENSMAUG00000009399)	Hspa12a (ENSMAUG00000003739)	1700019N19Rik (ENSMAUG00000011699)
Cricetidae_B	ANCESTRAL SPECIES	1															ENSGT00940000160702.b #20	ENSGT00940000153430.a.b #22	ENSGT00390000014431 #23	ENSGT00730000111063 #24	ENSGT00950000183135.B.b	ENSGT00390000000403 #26	ENSGT00940000162008 #27	ENSGT00390000008978 #28	ENSGT00940000158482 #29	ENSGT00940000157425.B #31	ENSGT00390000017746 #32	ENSGT00940000157593 #33	ENSGT00700000104522 #34	ENSGT00940000161152 #35	ENSGT00510000048167.a #37	ENSGT00950000182805.a.b	ENSGT00940000154551
Prairie vole	MODERN SPECIES	16															Grk5 (ENSMOCG00000001669) #20	Prdx3 (ENSMOCG00000013290) #22	Dennd10 (ENSMOCG00000012284) #23	Eif3a (ENSMOCG00000002406) #24	Nanos1 (ENSMOCG00000007708)	Cacul1 (ENSMOCG00000005008) #26	Prlhr (ENSMOCG00000001307) #27	ENSMOCG00000006709 #28	Rab11fip2 (ENSMOCG00000004019) #29	Emx2 (ENSMOCG00000019514) #31	Pdzd8 (ENSMOCG00000010922) #32	Slc18a2 (ENSMOCG00000013802) #33	Kcnk18 (ENSMOCG00000003123) #34	Vax1 (ENSMOCG00000008001) #35	Shtn1 (ENSMOCG00000012289) #37	Eno4 (ENSMOCG00000008352)	Hspa12a (ENSMOCG00000000721)
Northern American deer mouse	MODERN SPECIES		ENSPEMG00000031413	Habp2 (ENSPEMG00000011718)	Nrap (ENSPEMG00000005107)	Casp7 (ENSPEMG00000026293)	Plekhs1 (ENSPEMG00000000342)	Dclre1a (ENSPEMG00000010861)	Nhlrc2 (ENSPEMG00000013954)	Adrb1 (ENSPEMG00000014645)	Ccdc186 (ENSPEMG00000000425)	Tdrd1 (ENSPEMG00000004582)	Vwa2 (ENSPEMG00000017216)	Afap1l2 (ENSPEMG00000000090)	Ablim1 (ENSPEMG00000016085)	Grk5 (ENSPEMG00000017149) #20	ENSPEMG00000000210	Prdx3 (ENSPEMG00000009413) #22	Dennd10 (ENSPEMG00000009587) #23	Eif3a (ENSPEMG00000000086) #24	Nanos1 (ENSPEMG00000019116)	Cacul1 (ENSPEMG00000028052) #26	Prlhr (ENSPEMG00000014534) #27	Fam204a (ENSPEMG00000001885) #28	Rab11fip2 (ENSPEMG00000000413) #29	Emx2 (ENSPEMG00000017271) #31	Pdzd8 (ENSPEMG00000010555) #32	Slc18a2 (ENSPEMG00000008504) #33	Kcnk18 (ENSPEMG00000009989) #34	Vax1 (ENSPEMG00000008665) #35	Shtn1 (ENSPEMG00000007069) #37	Eno4 (ENSPEMG00000018141)	Hspa12a (ENSPEMG00000002037)
Murinae	ANCESTRAL SPECIES															ENSGT00940000153805.q.b.a.a.a.a.a.a.a.b	ENSGT00940000160702.b #20	ENSGT00940000153430.a.b #22	ENSGT01030000234641.a.b #21	ENSGT00390000014431 #23	ENSGT00730000111063 #24	ENSGT00950000183135.B.b	ENSGT00390000000403 #26	ENSGT00940000162008 #27	ENSGT00390000008978 #28	ENSGT00940000158482 #29	ENSGT00940000157425.B #31	ENSGT00390000017746 #32	ENSGT00940000157593 #33	ENSGT00700000104522 #34	ENSGT00940000161152 #35	ENSGT00510000048167.a #37	ENSGT00950000182805.a.b
Mus	ANCESTRAL SPECIES															ENSGT00940000153805.q.b.a.a.a.a.a.a.a.b	ENSGT00940000160702.b #20	ENSGT00940000153430.a.b #22	ENSGT01030000234641.a.b #21	ENSGT00390000014431 #23	ENSGT00730000111063 #24	ENSGT00950000183135.B.b	ENSGT00390000000403 #26	ENSGT00940000162008 #27	ENSGT00390000008978 #28	ENSGT00940000158482 #29	ENSGT00940000157425.B #31	ENSGT00390000017746 #32	ENSGT00940000157593 #33	ENSGT00700000104522 #34	ENSGT00940000161152 #35	ENSGT00510000048167.a #37	ENSGT00950000182805.a.b
Mus_A	ANCESTRAL SPECIES	16														ENSGT00940000153805.q.b.a.a.a.a.a.a.a.b	ENSGT00940000160702.b.b #20	ENSGT00940000153430.a.b #22	ENSGT01030000234641.a.b #21	ENSGT00390000014431 #23	ENSGT00730000111063 #24	ENSGT00950000183135.B.b	ENSGT00390000000403 #26	ENSGT00940000162008 #27	ENSGT00390000008978 #28	ENSGT00940000158482 #29	ENSGT00940000157425.B #31	ENSGT00390000017746 #32	ENSGT00940000157593 #33	ENSGT00700000104522 #34	ENSGT00940000161152 #35	ENSGT00510000048167.a #37	ENSGT00950000182805.a.b
Mus_B	ANCESTRAL SPECIES	16														ENSGT00940000153805.q.b.a.a.a.a.a.a.a.b	ENSGT00940000160702.b.b #20	ENSGT00940000153430.a.b #22	ENSGT01030000234641.a.b #21	ENSGT00390000014431 #23	ENSGT00730000111063 #24	ENSGT00950000183135.B.b	ENSGT00390000000403 #26	ENSGT00940000162008 #27	ENSGT00390000008978 #28	ENSGT00940000158482 #29	ENSGT00940000157425.B #31	ENSGT00390000017746 #32	ENSGT00940000157593 #33	ENSGT00700000104522 #34	ENSGT00940000161152 #35	ENSGT00510000048167.a #37	ENSGT00950000182805.a.b
Mouse	MODERN SPECIES	10												Csf2ra (ENSMUSG00000059326)	Gm7102 (ENSMUSG00000094649)	Zfp950 (ENSMUSG00000074733)	Grk5 (ENSMUSG00000003228) #20	Prdx3 (ENSMUSG00000024997) #22	Sfxn4 (ENSMUSG00000063698) #21	Dennd10 (ENSMUSG00000024993) #23	Eif3a (ENSMUSG00000024991) #24	Nanos1 (ENSMUSG00000072437)	Cacul1 (ENSMUSG00000033417) #26	Prlhr (ENSMUSG00000045052) #27	Fam204a (ENSMUSG00000057858) #28	Rab11fip2 (ENSMUSG00000040022) #29	Emx2 (ENSMUSG00000043969) #31	Pdzd8 (ENSMUSG00000074746) #32	Slc18a2 (ENSMUSG00000025094) #33	Kcnk18 (ENSMUSG00000040901) #34	Vax1 (ENSMUSG00000006270) #35	Shtn1 (ENSMUSG00000041362) #37	Eno4 (ENSMUSG00000048029)
Mus_C	ANCESTRAL SPECIES	24														ENSGT00940000153805.q.b.a.a.a.a.a.a.a.b	ENSGT00940000160702.b.b #20	ENSGT00940000153430.a.b #22	ENSGT01030000234641.a.b #21	ENSGT00390000014431 #23	ENSGT00730000111063 #24	ENSGT00950000183135.B.b	ENSGT00390000000403 #26	ENSGT00940000162008 #27	ENSGT00390000008978 #28	ENSGT00940000158482 #29	ENSGT00940000157425.B #31	ENSGT00390000017746 #32	ENSGT00940000157593 #33	ENSGT00700000104522 #34	ENSGT00940000161152 #35	ENSGT00510000048167.a #37	ENSGT00950000182805.a.b
Steppe mouse	MODERN SPECIES	38													Zfp950 (ENSMSIG00000028121)	Grk5 (ENSMSIG00000028137) #20	ENSMSIG00000028146	Prdx3 (ENSMSIG00000028149) #22	Sfxn4 (ENSMSIG00000028157) #21	Dennd10 (ENSMSIG00000028163) #23	ENSMSIG00000028172	Eif3a (ENSMSIG00000028178) #24	Nanos1 (ENSMSIG00000028205)	Cacul1 (ENSMSIG00000028208) #26	Prlhr (ENSMSIG00000028226) #27	Fam204a (ENSMSIG00000028227) #28	Rab11fip2 (ENSMSIG00000028250) #29	Emx2 (ENSMSIG00000028276) #31	Pdzd8 (ENSMSIG00000028285) #32	Slc18a2 (ENSMSIG00000028291) #33	Kcnk18 (ENSMSIG00000028309) #34	ENSMSIG00000028314	Vax1 (ENSMSIG00000028320) #35
spretus	MODERN SPECIES	10													Csf2ra (MGP_SPRETEiJ_G0024048)	Zfp950 (MGP_SPRETEiJ_G0024047)	Grk5 (MGP_SPRETEiJ_G0024046) #20	Prdx3 (MGP_SPRETEiJ_G0024045) #22	Sfxn4 (MGP_SPRETEiJ_G0024044) #21	Dennd10 (MGP_SPRETEiJ_G0024043) #23	Eif3a (MGP_SPRETEiJ_G0024042) #24	Nanos1 (MGP_SPRETEiJ_G0024041)	Cacul1 (MGP_SPRETEiJ_G0024040) #26	Prlhr (MGP_SPRETEiJ_G0024039) #27	Fam204a (MGP_SPRETEiJ_G0024038) #28	Rab11fip2 (MGP_SPRETEiJ_G0024037) #29	Emx2 (MGP_SPRETEiJ_G0024036) #31	Pdzd8 (MGP_SPRETEiJ_G0024035) #32	Slc18a2 (MGP_SPRETEiJ_G0024034) #33	Kcnk18 (MGP_SPRETEiJ_G0024033) #34	Vax1 (MGP_SPRETEiJ_G0024032) #35	Shtn1 (MGP_SPRETEiJ_G0024031) #37	Eno4 (MGP_SPRETEiJ_G0024030)
Ryukyu mouse	MODERN SPECIES	10													Csf2ra (MGP_CAROLIEiJ_G0023127)	Zfp950 (MGP_CAROLIEiJ_G0023126)	Grk5 (MGP_CAROLIEiJ_G0023125) #20	Prdx3 (MGP_CAROLIEiJ_G0023124) #22	Sfxn4 (MGP_CAROLIEiJ_G0023123) #21	Dennd10 (MGP_CAROLIEiJ_G0023122) #23	Eif3a (MGP_CAROLIEiJ_G0023121) #24	Nanos1 (MGP_CAROLIEiJ_G0023120)	MGP_CAROLIEiJ_G0023119 #26	Prlhr (MGP_CAROLIEiJ_G0023118) #27	Fam204a (MGP_CAROLIEiJ_G0023117) #28	Rab11fip2 (MGP_CAROLIEiJ_G0023116) #29	Emx2 (MGP_CAROLIEiJ_G0023115) #31	Pdzd8 (MGP_CAROLIEiJ_G0023114) #32	Slc18a2 (MGP_CAROLIEiJ_G0023113) #33	Kcnk18 (MGP_CAROLIEiJ_G0023112) #34	Vax1 (MGP_CAROLIEiJ_G0023111) #35	Shtn1 (MGP_CAROLIEiJ_G0023110) #37	Eno4 (MGP_CAROLIEiJ_G0023109)
Shrew mouse	MODERN SPECIES															MGP_PahariEiJ_G0014614	Grk5 (MGP_PahariEiJ_G0014613) #20	Prdx3 (MGP_PahariEiJ_G0014612) #22	Sfxn4 (MGP_PahariEiJ_G0014611) #21	Dennd10 (MGP_PahariEiJ_G0014610) #23	Eif3a (MGP_PahariEiJ_G0014609) #24	Nanos1 (MGP_PahariEiJ_G0014608)	Cacul1 (MGP_PahariEiJ_G0014607) #26	Prlhr (MGP_PahariEiJ_G0014606) #27	Fam204a (MGP_PahariEiJ_G0014605) #28	Rab11fip2 (MGP_PahariEiJ_G0014604) #29	Emx2 (MGP_PahariEiJ_G0014603) #31	Pdzd8 (MGP_PahariEiJ_G0014602) #32	Slc18a2 (MGP_PahariEiJ_G0014601) #33	Kcnk18 (MGP_PahariEiJ_G0014600) #34	Vax1 (MGP_PahariEiJ_G0014599) #35	Shtn1 (MGP_PahariEiJ_G0014598) #37	Eno4 (MGP_PahariEiJ_G0014597)
Rat	MODERN SPECIES											Ces2c (ENSRNOG00000036571)	Ces2i (ENSRNOG00000012034)	RGD1563099 (ENSRNOG00000051496)	LOC102550729 (ENSRNOG00000066489)	LOC102550291 (ENSRNOG00000032668)	Grk5 (ENSRNOG00000011439) #20	Prdx3 (ENSRNOG00000010958) #22	Sfxn4 (ENSRNOG00000036572) #21	Dennd10 (ENSRNOG00000010230) #23	Eif3a (ENSRNOG00000010117) #24	Nanos1 (ENSRNOG00000025060)	AABR07007121.1 (ENSRNOG00000033843)	LOC100359574 (ENSRNOG00000025154)	Cacul1 (ENSRNOG00000009954) #26	Prlhr (ENSRNOG00000009922) #27	Fam204a (ENSRNOG00000009830) #28	Rab11fip2 (ENSRNOG00000009523) #29	Emx2 (ENSRNOG00000009482) #31	Pdzd8 (ENSRNOG00000009460) #32	Slc18a2 (ENSRNOG00000008890) #33	Kcnk18 (ENSRNOG00000032706) #34	Vax1 (ENSRNOG00000008824) #35
Upper Galilee mountains blind mole rat	MODERN SPECIES	556	Btbd16 (ENSNGAG00000019177)	ENSNGAG00000012564	Nsmce4a (ENSNGAG00000009717)	Ate1 (ENSNGAG00000011904)	Fgfr2 (ENSNGAG00000017837)	Wdr11 (ENSNGAG00000001781)	Plpp4 (ENSNGAG00000018055) #9	ENSNGAG00000022208 #10	ENSNGAG00000022868 #10	Mcmbp (ENSNGAG00000001050) #11	Inpp5f (ENSNGAG00000016489) #12	Bag3 (ENSNGAG00000018737) #13	Tial1 (ENSNGAG00000020427) #16	Rgs10 (ENSNGAG00000022036) #19	Grk5 (ENSNGAG00000022629) #20	Prdx3 (ENSNGAG00000006625) #22	Sfxn4 (ENSNGAG00000016136) #21	Dennd10 (ENSNGAG00000017203) #23	Eif3a (ENSNGAG00000019550) #24	Nanos1 (ENSNGAG00000023539)	Cacul1 (ENSNGAG00000023911) #26	Prlhr (ENSNGAG00000009274) #27	Fam204a (ENSNGAG00000001002) #28	Rab11fip2 (ENSNGAG00000008604) #29	Emx2 (ENSNGAG00000020570) #31	Pdzd8 (ENSNGAG00000021130) #32	Slc18a2 (ENSNGAG00000003157) #33	Kcnk18 (ENSNGAG00000005889) #34	Vax1 (ENSNGAG00000007068) #35	Shtn1 (ENSNGAG00000011332) #37	Eno4 (ENSNGAG00000018461)
Lesser Egyptian jerboa	MODERN SPECIES	70	Ate1 (ENSJJAG00000013127)	Fgfr2 (ENSJJAG00000012859)	Wdr11 (ENSJJAG00000014160)	Plpp4 (ENSJJAG00000022845) #9	ENSJJAG00000014744 #10	ENSJJAG00000021258 #10	Mcmbp (ENSJJAG00000022939) #11	Inpp5f (ENSJJAG00000020126) #12	ENSJJAG00000016414	ENSJJAG00000010122	Bag3 (ENSJJAG00000013499) #13	ENSJJAG00000005398 #16	ENSJJAG00000015632	Rgs10 (ENSJJAG00000010554) #19	Grk5 (ENSJJAG00000022251) #20	Prdx3 (ENSJJAG00000023489) #22	Sfxn4 (ENSJJAG00000009478) #21	Dennd10 (ENSJJAG00000006686) #23	Eif3a (ENSJJAG00000015031) #24	Cacul1 (ENSJJAG00000017702) #26	Prlhr (ENSJJAG00000010343) #27	Fam204a (ENSJJAG00000012691) #28	ENSJJAG00000009898	Rab11fip2 (ENSJJAG00000013758) #29	Emx2 (ENSJJAG00000016378) #31	Pdzd8 (ENSJJAG00000023211) #32	Slc18a2 (ENSJJAG00000023573) #33	Kcnk18 (ENSJJAG00000006813) #34	Vax1 (ENSJJAG00000020260) #35	Shtn1 (ENSJJAG00000020061) #37	Eno4 (ENSJJAG00000012645)
Kangaroo rat	MODERN SPECIES	377	Btbd16 (ENSDORG00000005110)	ENSDORG00000003881	Nsmce4a (ENSDORG00000003880)	Ate1 (ENSDORG00000011669)	Fgfr2 (ENSDORG00000005639)	Wdr11 (ENSDORG00000003077)	Plpp4 (ENSDORG00000002515) #9	ENSDORG00000008015 #10	ENSDORG00000027445 #10	Mcmbp (ENSDORG00000008011) #11	Inpp5f (ENSDORG00000003458) #12	Bag3 (ENSDORG00000011527) #13	Tial1 (ENSDORG00000010683) #16	Rgs10 (ENSDORG00000003521) #19	Grk5 (ENSDORG00000008496) #20	Prdx3 (ENSDORG00000004623) #22	Sfxn4 (ENSDORG00000004492) #21	Dennd10 (ENSDORG00000026703) #23	Eif3a (ENSDORG00000003481) #24	Nanos1 (ENSDORG00000029226)	Cacul1 (ENSDORG00000028189) #26	Prlhr (ENSDORG00000012693) #27	Fam204a (ENSDORG00000002074) #28	Rab11fip2 (ENSDORG00000010895) #29
Rodentia_A	ANCESTRAL SPECIES	15	ENSGT00940000161718	ENSGT00940000157052	ENSGT00390000011476	ENSGT00390000016534.B	ENSGT00500000044926	ENSGT00940000155447	ENSGT00390000004068	ENSGT00940000158288 #9	ENSGT00940000156602 #10	ENSGT00390000017265 #11	ENSGT00940000155996 #12	ENSGT00940000159204 #13	ENSGT00940000160482 #16	ENSGT00940000161426 #19	ENSGT00940000160702.b #20	ENSGT00940000153430.a.b #22	ENSGT01030000234641.a.b #21	ENSGT00390000014431 #23	ENSGT00730000111063 #24	ENSGT00950000183135.B.b	ENSGT00390000000403 #26	ENSGT00940000162008 #27	ENSGT00390000008978 #28	ENSGT00940000158482 #29	ENSGT00910000147822	ENSGT00940000157425.B #31	ENSGT00390000017746 #32	ENSGT00940000157593 #33	ENSGT00700000104522 #34	ENSGT00940000161152 #35	ENSGT00510000048167.a #37
Hystricomorpha	ANCESTRAL SPECIES	1	ENSGT00940000161718	ENSGT00940000157052	ENSGT00390000011476	ENSGT00500000044926	ENSGT00940000155447	ENSGT00390000004068	ENSGT00940000158288 #9	ENSGT00940000156602 #10	ENSGT00390000017265 #11	ENSGT00940000155996 #12	ENSGT00940000159204 #13	ENSGT00940000154962.B	ENSGT00940000160482 #16	ENSGT00940000161426 #19	ENSGT00940000160702.b #20	ENSGT00940000153430.a.b #22	ENSGT00390000014431 #23	ENSGT00730000111063 #24	ENSGT00950000183135.B.b	ENSGT00390000000403 #26	ENSGT00940000162008 #27	ENSGT00390000008978 #28	ENSGT00940000158482 #29	ENSGT00940000157425.B #31	ENSGT00390000017746 #32	ENSGT00940000157593 #33	ENSGT00700000104522 #34	ENSGT00940000161152 #35	ENSGT00510000048167.a #37	ENSGT00950000182805.a.b	ENSGT00940000154551
Hystricomorpha_a	ANCESTRAL SPECIES	3	ENSGT00940000161718	ENSGT00940000157052	ENSGT00390000011476	ENSGT00500000044926	ENSGT00940000155447	ENSGT00390000004068	ENSGT00940000158288 #9	ENSGT00940000156602 #10	ENSGT00390000017265 #11	ENSGT00940000155996 #12	ENSGT00940000159204 #13	ENSGT00940000154962.B	ENSGT00940000160482 #16	ENSGT00940000161426 #19	ENSGT00940000160702.b #20	ENSGT00940000153430.a.b #22	ENSGT00390000014431 #23	ENSGT00730000111063 #24	ENSGT00950000183135.B.b	ENSGT00390000000403 #26	ENSGT00940000162008 #27	ENSGT00390000008978 #28	ENSGT00940000158482 #29	ENSGT00940000157425.B #31	ENSGT00390000017746 #32	ENSGT00940000157593 #33	ENSGT00700000104522 #34	ENSGT00940000161152 #35	ENSGT00510000048167.a #37	ENSGT00950000182805.a.b	ENSGT00940000154551
Guinea pig	MODERN SPECIES	1	PLEKHA1 (ENSCPOG00000000631)	BTBD16 (ENSCPOG00000000630)	ENSCPOG00000000626	NSMCE4A (ENSCPOG00000000625)	ATE1 (ENSCPOG00000025966)	FGFR2 (ENSCPOG00000008833)	WDR11 (ENSCPOG00000014291)	PLPP4 (ENSCPOG00000012587) #9	SEC23IP (ENSCPOG00000004752) #10	MCMBP (ENSCPOG00000009028) #11	INPP5F (ENSCPOG00000009019) #12	BAG3 (ENSCPOG00000007549) #13	ENSCPOG00000006074	RGS10 (ENSCPOG00000004325) #19	GRK5 (ENSCPOG00000007453) #20	PRDX3 (ENSCPOG00000039588) #22	DENND10 (ENSCPOG00000015190) #23	EIF3A (ENSCPOG00000015188) #24	NANOS1 (ENSCPOG00000038609)	CACUL1 (ENSCPOG00000010902) #26	PRLHR (ENSCPOG00000007186) #27	FAM204A (ENSCPOG00000034589) #28	RAB11FIP2 (ENSCPOG00000000453) #29	EMX2 (ENSCPOG00000003299) #31	PDZD8 (ENSCPOG00000029989) #32	SLC18A2 (ENSCPOG00000003595) #33	KCNK18 (ENSCPOG00000003594) #34	VAX1 (ENSCPOG00000000542) #35	SHTN1 (ENSCPOG00000010984) #37	ENO4 (ENSCPOG00000010978)	HSPA12A (ENSCPOG00000003085)
Hystricomorpha_b	ANCESTRAL SPECIES	14	ENSGT00940000155157	ENSGT00940000161718	ENSGT00940000157052	ENSGT00390000011476	ENSGT00500000044926	ENSGT00940000155447	ENSGT00390000004068	ENSGT00940000158288 #9	ENSGT00940000156602 #10	ENSGT00390000017265 #11	ENSGT00940000155996 #12	ENSGT00940000159204 #13	ENSGT00940000160482 #16	ENSGT00940000161426 #19	ENSGT00940000160702.b #20	ENSGT00940000153430.a.b #22	ENSGT00390000014431 #23	ENSGT00730000111063 #24	ENSGT00950000183135.B.b	ENSGT00390000000403 #26	ENSGT00940000162008 #27	ENSGT00390000008978 #28	ENSGT00940000158482 #29	ENSGT00940000157425.B #31	ENSGT00390000017746 #32	ENSGT00940000157593 #33	ENSGT00940000168364	ENSGT00940000161152 #35	ENSGT00510000048167.a #37	ENSGT00950000182805.a.b	ENSGT00940000154551
Long-tailed chinchilla	MODERN SPECIES	138																PRDX3 (ENSCLAG00000009194) #22	DENND10 (ENSCLAG00000009118) #23	EIF3A (ENSCLAG00000008246) #24	NANOS1 (ENSCLAG00000005574)	CACUL1 (ENSCLAG00000005363) #26	PRLHR (ENSCLAG00000017763) #27	FAM204A (ENSCLAG00000005139) #28	RAB11FIP2 (ENSCLAG00000005056) #29	EMX2 (ENSCLAG00000004915) #31	PDZD8 (ENSCLAG00000004722) #32	SLC18A2 (ENSCLAG00000004559) #33	ENSCLAG00000004441	VAX1 (ENSCLAG00000004384) #35	SHTN1 (ENSCLAG00000005361) #37	ENO4 (ENSCLAG00000005176)	HSPA12A (ENSCLAG00000004245)
Degu	DUPLICATION
Degu	DUPLICATION
Degu	DUPLICATION
Degu	MODERN SPECIES	51	WDR11 (ENSODEG00000017999)	ENSODEG00000017528	PLPP4 (ENSODEG00000017787) #9	ENSODEG00000017622	ENSODEG00000017620	ENSODEG00000020513	ENSODEG00000017568 #10	ENSODEG00000017627 #10	MCMBP (ENSODEG00000017666) #11	INPP5F (ENSODEG00000017771) #12	BAG3 (ENSODEG00000017665) #13	ENSODEG00000020474	TIAL1 (ENSODEG00000017741) #16	RGS10 (ENSODEG00000017673) #19	GRK5 (ENSODEG00000017760) #20	ENSODEG00000017739 #22	ENSODEG00000017551 #23	EIF3A (ENSODEG00000017775) #24	NANOS1 (ENSODEG00000017556)	CACUL1 (ENSODEG00000017578) #26	PRLHR (ENSODEG00000020548) #27	ENSODEG00000017661	ENSODEG00000018333	ENSODEG00000017684	ENSODEG00000017745 #28	RAB11FIP2 (ENSODEG00000017734) #29	EMX2 (ENSODEG00000017809) #31	PDZD8 (ENSODEG00000017906) #32	ENSODEG00000017723	ENSODEG00000017676	SLC18A2 (ENSODEG00000017927) #33
Degu	MODERN SPECIES	42	KATNIP (ENSODEG00000012822)	ENSODEG00000012637	IL21R (ENSODEG00000013082)	ENSODEG00000020080	ENSODEG00000013555	NSMCE1 (ENSODEG00000012706)	ENSODEG00000012500	ENSODEG00000013243	ENSODEG00000013618	ENSODEG00000013856	AQP8 (ENSODEG00000014253)	LCMT1 (ENSODEG00000014358)	ARHGAP17 (ENSODEG00000014875)	SLC5A11 (ENSODEG00000012731)	TNRC6A (ENSODEG00000012802)	ENSODEG00000013091 #22	RBBP6 (ENSODEG00000012319)	CACNG3 (ENSODEG00000012815)	ENSODEG00000012391	PRKCB (ENSODEG00000015099)	CHP2 (ENSODEG00000012692)	ERN2 (ENSODEG00000012257)	ENSODEG00000013110	DCTN5 (ENSODEG00000012350)	PALB2 (ENSODEG00000013941)	ENSODEG00000012090	ENSODEG00000012457	EARS2 (ENSODEG00000014346)	GGA2 (ENSODEG00000014446)	ENSODEG00000020247	COG7 (ENSODEG00000012315)
Degu	MODERN SPECIES	130	PRSS56 (ENSODEG00000007807)	CHRND (ENSODEG00000007466)	CHRNG (ENSODEG00000012691)	ENSODEG00000008170	EFHD1 (ENSODEG00000009395)	GIGYF2 (ENSODEG00000009987)	KCNJ13 (ENSODEG00000007933)	ENSODEG00000008808	SNORC (ENSODEG00000007643)	NGEF (ENSODEG00000008182)	ENSODEG00000008286	ENSODEG00000008563	ENSODEG00000019569	NEU2 (ENSODEG00000008947)	INPP5D (ENSODEG00000008216)	ENSODEG00000019603 #22	ATG16L1 (ENSODEG00000008154)	SAG (ENSODEG00000008121)	DGKD (ENSODEG00000008384)	ENSODEG00000019500	ENSODEG00000007995	ENSODEG00000008578	UGT1A6 (ENSODEG00000009095)	MROH2A (ENSODEG00000008630)	TRPM8 (ENSODEG00000012967)	SPP2 (ENSODEG00000008199)	ARL4C (ENSODEG00000019668)	SH3BP4 (ENSODEG00000008911)	AGAP1 (ENSODEG00000009204)	GBX2 (ENSODEG00000008224)	ASB18 (ENSODEG00000008270)
Degu	DUPLICATION
Degu	MODERN SPECIES	44	ENSODEG00000018335	ENSODEG00000018449	ENSODEG00000018350	ENSODEG00000018344	ENSODEG00000018387	FHOD3 (ENSODEG00000018487)	MOCOS (ENSODEG00000018329)	ELP2 (ENSODEG00000018360)	SLC39A6 (ENSODEG00000018391)	RPRD1A (ENSODEG00000018331)	ENSODEG00000018309	GALNT1 (ENSODEG00000018395)	ENSODEG00000020532	ENSODEG00000018436	ENSODEG00000018453	ENSODEG00000018420 #22	ENSODEG00000020539	ZNF24 (ENSODEG00000018328)	ENSODEG00000018345	ENSODEG00000018301	ZNF397 (ENSODEG00000018455)	MAPRE2 (ENSODEG00000018430)	DTNA (ENSODEG00000018476)	ENSODEG00000018326	NOL4 (ENSODEG00000018414)	ASXL3 (ENSODEG00000018431)	ENSODEG00000020529	KLHL14 (ENSODEG00000018307)	ENSODEG00000018292	GAREM1 (ENSODEG00000018355)	MEP1B (ENSODEG00000018454)
Degu	MODERN SPECIES	151	ZMAT3 (ENSODEG00000003313)	KCNMB2 (ENSODEG00000003349)	TBL1XR1 (ENSODEG00000003370)	ENSODEG00000003408	ENSODEG00000003420	SOX3 (ENSODEG00000003426)	ENSODEG00000003432	ENSODEG00000003458	ATP11C (ENSODEG00000003493)	MCF2 (ENSODEG00000003577)	F9 (ENSODEG00000003689)	FGF13 (ENSODEG00000003799)	ENSODEG00000003824	ENSODEG00000003847	ENSODEG00000003878	ENSODEG00000005517 #22	ENSODEG00000019174	ENSODEG00000019167	ENSODEG00000005534	ZIC3 (ENSODEG00000005556)	ENSODEG00000005580
Naked mole-rat female	DUPLICATION
Naked mole-rat female	MODERN SPECIES	4	ENSHGLG00000044013	PLPP4 (ENSHGLG00000012927) #9	ENSHGLG00000045415	SEC23IP (ENSHGLG00000013752) #10	ENSHGLG00000011466 #11	INPP5F (ENSHGLG00000009930) #12	ENSHGLG00000042038	BAG3 (ENSHGLG00000013505) #13	ENSHGLG00000012192	TIAL1 (ENSHGLG00000013775) #16	ENSHGLG00000034213	RGS10 (ENSHGLG00000037265) #19	GRK5 (ENSHGLG00000050923) #20	ENSHGLG00000038210 #20	ENSHGLG00000011210	ENSHGLG00000009711 #22	DENND10 (ENSHGLG00000010220) #23	EIF3A (ENSHGLG00000013260) #24	NANOS1 (ENSHGLG00000045577)	ENSHGLG00000011185	CACUL1 (ENSHGLG00000009961) #26	PRLHR (ENSHGLG00000009873) #27	ENSHGLG00000040532	ENSHGLG00000047764 #28	RAB11FIP2 (ENSHGLG00000010515) #29	ENSHGLG00000021291	ENSHGLG00000037873	EMX2 (ENSHGLG00000012841) #31	PDZD8 (ENSHGLG00000012055) #32	SLC18A2 (ENSHGLG00000012362) #33	ENSHGLG00000045816
Naked mole-rat female	MODERN SPECIES	26	KCTD19 (ENSHGLG00000012309)	PLEKHG4 (ENSHGLG00000010252)	SLC9A5 (ENSHGLG00000012224)	FHOD1 (ENSHGLG00000012638)	TMEM208 (ENSHGLG00000015097)	ENSHGLG00000014519	ENSHGLG00000019291	ELMO3 (ENSHGLG00000014154)	E2F4 (ENSHGLG00000014276)	EXOC3L1 (ENSHGLG00000010315)	MATCAP1 (ENSHGLG00000011035)	ENSHGLG00000037771	HSF4 (ENSHGLG00000014438)	FBXL8 (ENSHGLG00000019079)	B3GNT9 (ENSHGLG00000035794)	ENSHGLG00000009942 #22	ENSHGLG00000016123	ENSHGLG00000046177	CBFB (ENSHGLG00000050469)	CES4A (ENSHGLG00000033432)	ENSHGLG00000012610	ENSHGLG00000016814	ENSHGLG00000042617	ENSHGLG00000042496	ENSHGLG00000014852	ENSHGLG00000014325	ENSHGLG00000018728	ENSHGLG00000038905	ENSHGLG00000011239	CDH13 (ENSHGLG00000016234)	HSBP1 (ENSHGLG00000044111)
Sciuridae	ANCESTRAL SPECIES	21	ENSGT00940000161718	ENSGT00940000157052	ENSGT00390000011476	ENSGT00390000016534.B	ENSGT00500000044926	ENSGT00940000155447	ENSGT00390000004068	ENSGT00940000158288 #9	ENSGT00940000156602 #10	ENSGT00390000017265 #11	ENSGT00940000155996 #12	ENSGT00940000159204 #13	ENSGT00940000160482 #16	ENSGT00940000161426 #19	ENSGT00940000160702.b #20	ENSGT00940000153430.a.b #22	ENSGT01030000234641.a.b #21	ENSGT00390000014431 #23	ENSGT00730000111063 #24	ENSGT00950000183135.B.b	ENSGT00390000000403 #26	ENSGT00940000162008 #27	ENSGT00390000008978 #28	ENSGT00940000158482 #29	ENSGT00910000147822	ENSGT00940000157425.B #31	ENSGT00390000017746 #32	ENSGT00940000157593 #33	ENSGT00700000104522 #34	ENSGT00940000161152 #35	ENSGT00510000048167.a #37
Marmotini	ANCESTRAL SPECIES	16	ENSGT00940000161718	ENSGT00940000157052	ENSGT00390000011476	ENSGT00390000016534.B	ENSGT00500000044926	ENSGT00940000155447	ENSGT00390000004068	ENSGT00940000158288 #9	ENSGT00940000156602 #10	ENSGT00390000017265 #11	ENSGT00940000155996 #12	ENSGT00940000159204 #13	ENSGT00940000160482 #16	ENSGT00940000161426 #19	ENSGT00940000160702.b #20	ENSGT00940000153430.a.b #22	ENSGT01030000234641.a.b #21	ENSGT00390000014431 #23	ENSGT00730000111063 #24	ENSGT00390000000403 #26	ENSGT00940000162008 #27	ENSGT00390000008978 #28	ENSGT00940000158482 #29	ENSGT00910000147822	ENSGT00940000157425.B #31	ENSGT00390000017746 #32	ENSGT00940000157593 #33	ENSGT00940000161152 #35	ENSGT00510000048167.a #37	ENSGT00950000182805.a.b	ENSGT00940000154551
Marmotini_b	ANCESTRAL SPECIES	27	ENSGT00940000161718	ENSGT00940000157052	ENSGT00390000011476	ENSGT00390000016534.B	ENSGT00500000044926	ENSGT00940000155447	ENSGT00390000004068	ENSGT00940000158288 #9	ENSGT00940000156602 #10	ENSGT00390000017265 #11	ENSGT00940000155996 #12	ENSGT00940000159204 #13	ENSGT00940000160482 #16	ENSGT00940000161426 #19	ENSGT00940000160702.b #20	ENSGT00940000153430.a.b #22	ENSGT01030000234641.a.b #21	ENSGT00390000014431 #23	ENSGT00940000168868	ENSGT00940000164222	ENSGT00730000111063 #24	ENSGT00390000000403 #26	ENSGT00940000162008 #27	ENSGT00390000008978 #28	ENSGT00940000158482 #29	ENSGT00910000147822	ENSGT00940000157425.B #31	ENSGT00390000017746 #32	ENSGT00940000157593 #33	ENSGT00940000161152 #35	ENSGT00510000048167.a #37
Squirrel	MODERN SPECIES	86	BTBD16 (ENSSTOG00000015270)	ENSSTOG00000022252	NSMCE4A (ENSSTOG00000011112)	ATE1 (ENSSTOG00000027779)	FGFR2 (ENSSTOG00000003979)	WDR11 (ENSSTOG00000006935)	PLPP4 (ENSSTOG00000006962) #9	SEC23IP (ENSSTOG00000005178) #10	MCMBP (ENSSTOG00000005145) #11	INPP5F (ENSSTOG00000005115) #12	ENSSTOG00000032848	BAG3 (ENSSTOG00000023267) #13	TIAL1 (ENSSTOG00000025095) #16	RGS10 (ENSSTOG00000004925) #19	GRK5 (ENSSTOG00000002553) #20	PRDX3 (ENSSTOG00000002537) #22	SFXN4 (ENSSTOG00000032860) #21	DENND10 (ENSSTOG00000020685) #23	EIF3A (ENSSTOG00000002512) #24	CACUL1 (ENSSTOG00000007083) #26	PRLHR (ENSSTOG00000025720) #27	FAM204A (ENSSTOG00000028024) #28	RAB11FIP2 (ENSSTOG00000006253) #29	EMX2 (ENSSTOG00000012675) #31	PDZD8 (ENSSTOG00000022329) #32	SLC18A2 (ENSSTOG00000005607) #33	ENSSTOG00000005601	VAX1 (ENSSTOG00000023466) #35	SHTN1 (ENSSTOG00000019962) #37	ENO4 (ENSSTOG00000002618)	HSPA12A (ENSSTOG00000008905)
Arctic ground squirrel	MODERN SPECIES	28	TACC2 (ENSUPAG00010005112)	NSMCE4A (ENSUPAG00010006240)	ENSUPAG00010006255	ATE1 (ENSUPAG00010006266)	FGFR2 (ENSUPAG00010006384)	WDR11 (ENSUPAG00010006463)	PLPP4 (ENSUPAG00010006532) #9	ENSUPAG00010006552	SEC23IP (ENSUPAG00010006554) #10	MCMBP (ENSUPAG00010006578) #11	INPP5F (ENSUPAG00010006608) #12	BAG3 (ENSUPAG00010006628) #13	TIAL1 (ENSUPAG00010006642) #16	RGS10 (ENSUPAG00010006669) #19	GRK5 (ENSUPAG00010006723) #20	PRDX3 (ENSUPAG00010006779) #22	SFXN4 (ENSUPAG00010006790) #21	ENSUPAG00010006798	ENSUPAG00010006801	EIF3A (ENSUPAG00010006808) #24	CACUL1 (ENSUPAG00010006883) #26	PRLHR (ENSUPAG00010006938) #27	FAM204A (ENSUPAG00010006940) #28	RAB11FIP2 (ENSUPAG00010006952) #29	ENSUPAG00010006967	EMX2 (ENSUPAG00010006971) #31	PDZD8 (ENSUPAG00010006974) #32	SLC18A2 (ENSUPAG00010006981) #33
Alpin marmot	MODERN SPECIES	53	ENSMMMG00000001271	NSMCE4A (ENSMMMG00000001206)	ATE1 (ENSMMMG00000001092)	FGFR2 (ENSMMMG00000000986)	WDR11 (ENSMMMG00000000912)	ENSMMMG00000000896	ENSMMMG00000000883	PLPP4 (ENSMMMG00000000832) #9	SEC23IP (ENSMMMG00000000778) #10	MCMBP (ENSMMMG00000000744) #11	INPP5F (ENSMMMG00000000681) #12	BAG3 (ENSMMMG00000000616) #13	TIAL1 (ENSMMMG00000000560) #16	RGS10 (ENSMMMG00000000551) #19	GRK5 (ENSMMMG00000000513) #20	PRDX3 (ENSMMMG00000000500) #22	SFXN4 (ENSMMMG00000000466) #21	DENND10 (ENSMMMG00000000410) #23	EIF3A (ENSMMMG00000000325) #24	CACUL1 (ENSMMMG00000000294) #26	PRLHR (ENSMMMG00000000282) #27	ENSMMMG00000000261 #28	RAB11FIP2 (ENSMMMG00000000233) #29	ENSMMMG00000000226	EMX2 (ENSMMMG00000000198) #31	ENSMMMG00000000188 #32	SLC18A2 (ENSMMMG00000000153) #33	ENSMMMG00000000118	SHTN1 (ENSMMMG00000000051) #37	ENO4 (ENSMMMG00000018717)	HSPA12A (ENSMMMG00000018698)
Eurasian red squirrel	MODERN SPECIES	13	ENSSVLG00005001901	ENSSVLG00005001936	ENSSVLG00005001969	ATE1 (ENSSVLG00005002012)	ENSSVLG00005002095	FGFR2 (ENSSVLG00005002254)	WDR11 (ENSSVLG00005002429)	PLPP4 (ENSSVLG00005002461) #9	SEC23IP (ENSSVLG00005002496) #10	MCMBP (ENSSVLG00005002533) #11	INPP5F (ENSSVLG00005002590) #12	BAG3 (ENSSVLG00005002726) #13	ENSSVLG00005002763 #16	RGS10 (ENSSVLG00005002843) #19	GRK5 (ENSSVLG00005002880) #20	PRDX3 (ENSSVLG00005002921) #22	SFXN4 (ENSSVLG00005002960) #21	DENND10 (ENSSVLG00005003022) #23	EIF3A (ENSSVLG00005003063) #24	NANOS1 (ENSSVLG00005003114)	CACUL1 (ENSSVLG00005003130) #26	PRLHR (ENSSVLG00005003161) #27	ENSSVLG00005003176 #28	ENSSVLG00005003202	RAB11FIP2 (ENSSVLG00005003229) #29	EMX2 (ENSSVLG00005003262) #31	PDZD8 (ENSSVLG00005003282) #32	SLC18A2 (ENSSVLG00005003306) #33	ENSSVLG00005003368 #34	ENSSVLG00005003385 #34	ENSSVLG00005003406 #34
Lagomorpha	ANCESTRAL SPECIES	17	ENSGT00940000155157	ENSGT00940000161718	ENSGT00940000157052	ENSGT00390000011476	ENSGT00500000044926	ENSGT00940000155447	ENSGT00390000004068	ENSGT00940000158288 #9	ENSGT00940000156602 #10	ENSGT00390000017265 #11	ENSGT00940000155996 #12	ENSGT00940000159204 #13	ENSGT00940000160482 #16	ENSGT00940000161426 #19	ENSGT00940000160702.b #20	ENSGT00940000153430.a.b #22	ENSGT01030000234641.a.b #21	ENSGT00390000014431 #23	ENSGT00730000111063 #24	ENSGT00390000000403 #26	ENSGT00940000162008 #27	ENSGT00390000008978 #28	ENSGT00940000158482 #29	ENSGT00940000157425.B #31	ENSGT00390000017746 #32	ENSGT00940000157593 #33	ENSGT00700000104522 #34	ENSGT00940000161152 #35	ENSGT00510000048167.a #37	ENSGT00950000182805.a.b	ENSGT00940000154551
Rabbit	DUPLICATION
Rabbit	MODERN SPECIES	9	ENSOCUG00000026111	NSMCE4A (ENSOCUG00000000820)	ATE1 (ENSOCUG00000003373)	FGFR2 (ENSOCUG00000007069)	ENSOCUG00000001764	WDR11 (ENSOCUG00000013912)	ENSOCUG00000017933 #9	SEC23IP (ENSOCUG00000003141) #10	MCMBP (ENSOCUG00000002235) #11	INPP5F (ENSOCUG00000002226) #12	BAG3 (ENSOCUG00000011696) #13	TIAL1 (ENSOCUG00000003783) #16	RGS10 (ENSOCUG00000014618) #19	ENSOCUG00000035399 #20	ENSOCUG00000036390 #20	ENSOCUG00000017334 #22	SFXN4 (ENSOCUG00000005006) #21	DENND10 (ENSOCUG00000005001) #23	EIF3A (ENSOCUG00000004996) #24	CACUL1 (ENSOCUG00000015521) #26	PRLHR (ENSOCUG00000008663) #27	ENSOCUG00000005150 #28	RAB11FIP2 (ENSOCUG00000009241) #29	EMX2 (ENSOCUG00000012088) #31	PDZD8 (ENSOCUG00000012085) #32	SLC18A2 (ENSOCUG00000012080) #33	KCNK18 (ENSOCUG00000015015) #34	VAX1 (ENSOCUG00000013528) #35	ENSOCUG00000022157	SHTN1 (ENSOCUG00000008906) #37	ENO4 (ENSOCUG00000008897)
Rabbit	MODERN SPECIES	10	LIMD2 (ENSOCUG00000004288)	MAP3K3 (ENSOCUG00000004277)	DCAF7 (ENSOCUG00000015874)	KCNH6 (ENSOCUG00000015857)	ENSOCUG00000034369	ACE (ENSOCUG00000001555)	CYB561 (ENSOCUG00000026470)	TANC2 (ENSOCUG00000001554)	MARCHF10 (ENSOCUG00000012601)	ENSOCUG00000017494	MRC2 (ENSOCUG00000031663)	TLK2 (ENSOCUG00000006074)	ENSOCUG00000011591	EFCAB3 (ENSOCUG00000001831)	ENSOCUG00000033945	ENSOCUG00000029284 #22	ENSOCUG00000013026	EFCAB13 (ENSOCUG00000038552)	ENSOCUG00000024256	ITGB3 (ENSOCUG00000005579)	ENSOCUG00000022076	MYL4 (ENSOCUG00000010829)	CDC27 (ENSOCUG00000010815)	KANSL1 (ENSOCUG00000011401)	MAPT (ENSOCUG00000011386)	SPPL2C (ENSOCUG00000028114)	CRHR1 (ENSOCUG00000025701)	ENSOCUG00000023198	NSF (ENSOCUG00000014783)	WNT3 (ENSOCUG00000014805)	WNT9B (ENSOCUG00000021211)
Pika	MODERN SPECIES	92															GRK5 (ENSOPRG00000004900) #20	PRDX3 (ENSOPRG00000004882) #22	ENSOPRG00000004850 #21	DENND10 (ENSOPRG00000004823) #23	EIF3A (ENSOPRG00000004752) #24
Laurasiatheria	ANCESTRAL SPECIES	14	ENSGT00940000157052	ENSGT00390000011476	ENSGT00390000016534.B	ENSGT00500000044926	ENSGT00940000155447	ENSGT00390000004068	ENSGT00940000158288 #9	ENSGT00940000156602 #10	ENSGT00390000017265 #11	ENSGT00960000190376	ENSGT00940000155996 #12	ENSGT00940000159204 #13	ENSGT00940000160482 #16	ENSGT00940000161426 #19	ENSGT00940000160702.b #20	ENSGT00940000153430.a.b #22	ENSGT01030000234641.a.b #21	ENSGT00390000014431 #23	ENSGT00730000111063 #24	ENSGT00950000183135.B.b	ENSGT00390000000403 #26	ENSGT00940000162008 #27	ENSGT00390000008978 #28	ENSGT00390000010476	ENSGT00940000158482 #29	ENSGT00940000157425.B #31	ENSGT00390000017746 #32	ENSGT00940000157593 #33	ENSGT00700000104522 #34	ENSGT00940000161152 #35	ENSGT00510000048167.a #37
Laurasiatheria_a	ANCESTRAL SPECIES	15	ENSGT00940000157052	ENSGT00390000011476	ENSGT00390000016534.B	ENSGT00500000044926	ENSGT00940000155447	ENSGT00390000004068	ENSGT00940000158288 #9	ENSGT00940000156602 #10	ENSGT00390000017265 #11	ENSGT00960000190376	ENSGT00940000155996 #12	ENSGT00940000159204 #13	ENSGT00940000160482 #16	ENSGT00940000161426 #19	ENSGT00940000160702.b #20	ENSGT00940000153430.a.b #22	ENSGT01030000234641.a.b #21	ENSGT00390000014431 #23	ENSGT00730000111063 #24	ENSGT00950000183135.B.b	ENSGT00390000000403 #26	ENSGT00940000162008 #27	ENSGT00390000008978 #28	ENSGT00390000010476	ENSGT00940000158482 #29	ENSGT00940000157425.B #31	ENSGT00390000017746 #32	ENSGT00940000157593 #33	ENSGT00700000104522 #34	ENSGT00940000161152 #35	ENSGT00510000048167.a #37
Artiodactyla	ANCESTRAL SPECIES	14	ENSGT00940000161718	ENSGT00940000157052	ENSGT00390000011476	ENSGT00390000016534.B	ENSGT00500000044926	ENSGT00940000155447	ENSGT00390000004068	ENSGT00940000158288 #9	ENSGT00940000156602 #10	ENSGT00390000017265 #11	ENSGT00940000155996 #12	ENSGT00940000159204 #13	ENSGT00940000160482 #16	ENSGT00940000161426 #19	ENSGT00940000160702.b #20	ENSGT00940000153430.a.b #22	ENSGT01030000234641.a.b #21	ENSGT00390000014431 #23	ENSGT00730000111063 #24	ENSGT00950000183135.B.b	ENSGT00390000000403 #26	ENSGT00940000162008 #27	ENSGT00390000008978 #28	ENSGT00390000010476	ENSGT00940000158482 #29	ENSGT00940000157425.B #31	ENSGT00390000017746 #32	ENSGT00940000157593 #33	ENSGT00700000104522 #34	ENSGT00940000161152 #35	ENSGT00510000048167.a #37
Suina	ANCESTRAL SPECIES	6	ENSGT00940000155157	ENSGT00940000161718	ENSGT00940000157052	ENSGT00390000011476	ENSGT00500000044926	ENSGT00940000155447	ENSGT00390000004068	ENSGT00940000158288 #9	ENSGT00940000156602 #10	ENSGT00390000017265 #11	ENSGT00940000155996 #12	ENSGT00940000159204 #13	ENSGT00940000160482 #16	ENSGT00940000161426 #19	ENSGT00940000160702.b #20	ENSGT00940000153430.a.b #22	ENSGT01030000234641.a.b #21	ENSGT00390000014431 #23	ENSGT00730000111063 #24	ENSGT00950000183135.B.b	ENSGT00390000000403 #26	ENSGT00940000162008 #27	ENSGT00390000008978 #28	ENSGT00940000158482 #29	ENSGT00940000157425.B #31	ENSGT00390000017746.a #32	ENSGT00940000157593 #33	ENSGT00700000104522 #34	ENSGT00940000161152 #35	ENSGT00510000048167.a #37	ENSGT00950000182805.a.b
Chacoan peccary	MODERN SPECIES	955	BTBD16 (ENSCWAG00000010937)	ENSCWAG00000011139	NSMCE4A (ENSCWAG00000013284)	ATE1 (ENSCWAG00000013413)	FGFR2 (ENSCWAG00000013844)	WDR11 (ENSCWAG00000017961)	ENSCWAG00000017992	PLPP4 (ENSCWAG00000018014) #9	SEC23IP (ENSCWAG00000018097) #10	MCMBP (ENSCWAG00000018167) #11	INPP5F (ENSCWAG00000018266) #12	BAG3 (ENSCWAG00000018369) #13	TIAL1 (ENSCWAG00000018390) #16	RGS10 (ENSCWAG00000018430) #19	GRK5 (ENSCWAG00000018519) #20	PRDX3 (ENSCWAG00000018552) #22	SFXN4 (ENSCWAG00000018584) #21	DENND10 (ENSCWAG00000018618) #23	EIF3A (ENSCWAG00000018666) #24	NANOS1 (ENSCWAG00000018760)	CACUL1 (ENSCWAG00000018778) #26	PRLHR (ENSCWAG00000018814) #27	FAM204A (ENSCWAG00000018824) #28	RAB11FIP2 (ENSCWAG00000018850) #29	EMX2 (ENSCWAG00000018865) #31	ENSCWAG00000018881	PDZD8 (ENSCWAG00000018891) #32	SLC18A2 (ENSCWAG00000018909) #33	KCNK18 (ENSCWAG00000018968) #34	VAX1 (ENSCWAG00000018985) #35	SHTN1 (ENSCWAG00000019029) #37
Pig	MODERN SPECIES	5	NSMCE4A (ENSSSCG00000010700)	ENSSSCG00000057767	ATE1 (ENSSSCG00000010699)	FGFR2 (ENSSSCG00000010698)	ENSSSCG00000041462	WDR11 (ENSSSCG00000010692)	PLPP4 (ENSSSCG00000010691) #9	SEC23IP (ENSSSCG00000010690) #10	ENSSSCG00000056743	MCMBP (ENSSSCG00000010688) #11	INPP5F (ENSSSCG00000010687) #12	BAG3 (ENSSSCG00000010686) #13	TIAL1 (ENSSSCG00000010685) #16	RGS10 (ENSSSCG00000039838) #19	GRK5 (ENSSSCG00000010683) #20	PRDX3 (ENSSSCG00000010682) #22	SFXN4 (ENSSSCG00000010681) #21	DENND10 (ENSSSCG00000010680) #23	EIF3A (ENSSSCG00000010679) #24	NANOS1 (ENSSSCG00000040025)	ENSSSCG00000050381	CACUL1 (ENSSSCG00000038222) #26	PRLHR (ENSSSCG00000037789) #27	FAM204A (ENSSSCG00000010674) #28	RAB11FIP2 (ENSSSCG00000010672) #29	EMX2 (ENSSSCG00000032558) #31	ENSSSCG00000010669 #32	SLC18A2 (ENSSSCG00000020671) #33	VAX1 (ENSSSCG00000010666) #35	ENSSSCG00000042469	SHTN1 (ENSSSCG00000010665) #37
Artiodactyla_a	ANCESTRAL SPECIES	14	ENSGT00940000157052	ENSGT00390000011476	ENSGT00390000016534.B	ENSGT00500000044926	ENSGT00940000155447	ENSGT00390000004068	ENSGT00940000158288 #9	ENSGT00940000156602 #10	ENSGT00390000017265 #11	ENSGT00940000155996 #12	ENSGT00940000166688	ENSGT00940000159204 #13	ENSGT00940000160482 #16	ENSGT00940000161426 #19	ENSGT00940000160702.b #20	ENSGT00940000153430.a.b #22	ENSGT01030000234641.a.b #21	ENSGT00390000014431 #23	ENSGT00730000111063 #24	ENSGT00950000183135.B.b	ENSGT00390000000403 #26	ENSGT00940000162008 #27	ENSGT00390000008978 #28	ENSGT00390000010476	ENSGT00940000158482 #29	ENSGT00940000157425.B #31	ENSGT00390000017746 #32	ENSGT00940000157593 #33	ENSGT00700000104522 #34	ENSGT00940000161152 #35	ENSGT00510000048167.a #37
Camelidae	ANCESTRAL SPECIES	4	ENSGT00940000157052	ENSGT00390000011476	ENSGT00390000016534.B	ENSGT00500000044926	ENSGT00940000155447	ENSGT00390000004068	ENSGT00940000158288 #9	ENSGT00940000156602 #10	ENSGT00390000017265 #11	ENSGT00940000155996 #12	ENSGT00940000166688	ENSGT00940000159204 #13	ENSGT00940000160482 #16	ENSGT00940000161426 #19	ENSGT00940000160702.b #20	ENSGT00940000153430.a.b #22	ENSGT01030000234641.a.b #21	ENSGT00390000014431.g #23	ENSGT00730000111063 #24	ENSGT00390000000403 #26	ENSGT00390000008978 #28	ENSGT00390000010476	ENSGT00940000158482 #29	ENSGT00940000157425.B #31	ENSGT00390000017746 #32	ENSGT00940000157593 #33	ENSGT00700000104522 #34	ENSGT00510000048167.a #37	ENSGT00950000182805.a.b	ENSGT00940000154551	ENSGT00390000017460
Arabian camel	MODERN SPECIES	2	NSMCE4A (ENSCDRG00005013236)	ENSCDRG00005013283	ATE1 (ENSCDRG00005013374)	FGFR2 (ENSCDRG00005014046)	ENSCDRG00005014853	WDR11 (ENSCDRG00005014918)	PLPP4 (ENSCDRG00005015079) #9	SEC23IP (ENSCDRG00005015175) #10	MCMBP (ENSCDRG00005015289) #11	INPP5F (ENSCDRG00005015415) #12	ENSCDRG00005015966	BAG3 (ENSCDRG00005016010) #13	TIAL1 (ENSCDRG00005016058) #16	RGS10 (ENSCDRG00005016243) #19	GRK5 (ENSCDRG00005016297) #20	PRDX3 (ENSCDRG00005016447) #22	SFXN4 (ENSCDRG00005016498) #21	DENND10 (ENSCDRG00005016616) #23	EIF3A (ENSCDRG00005016694) #24	CACUL1 (ENSCDRG00005016843) #26	FAM204A (ENSCDRG00005016877) #28	RAB11FIP2 (ENSCDRG00005016920) #29	EMX2 (ENSCDRG00005016940) #31	PDZD8 (ENSCDRG00005016959) #32	SLC18A2 (ENSCDRG00005016999) #33	KCNK18 (ENSCDRG00005017056) #34	HSPA12A (ENSCDRG00005017219)	ENO4 (ENSCDRG00005018500)	C10orf82 (ENSCDRG00005018543)	PNLIPRP2 (ENSCDRG00005018619)	ENSCDRG00005018686
Alpaca	MODERN SPECIES	85																PRDX3 (ENSVPAG00000004893) #22	ENSVPAG00000004892 #21	ENSVPAG00000004890 #23
Artiodactyla_b	ANCESTRAL SPECIES	13	ENSGT00940000157052	ENSGT00390000011476	ENSGT00390000016534.B	ENSGT00500000044926	ENSGT00940000155447	ENSGT00390000004068	ENSGT00940000158288 #9	ENSGT00940000156602 #10	ENSGT00390000017265 #11	ENSGT00940000155996 #12	ENSGT00940000166688	ENSGT00940000159204 #13	ENSGT00940000160482 #16	ENSGT00940000161426 #19	ENSGT00940000160702.b #20	ENSGT00940000153430.a.b #22	ENSGT01030000234641.a.b #21	ENSGT00390000014431 #23	ENSGT00730000111063 #24	ENSGT00950000183135.B.b	ENSGT00390000000403 #26	ENSGT00940000162008 #27	ENSGT00390000008978 #28	ENSGT00940000158482 #29	ENSGT00940000157425.B #31	ENSGT00390000017746 #32	ENSGT00940000157593 #33	ENSGT00700000104522 #34	ENSGT00940000161152 #35	ENSGT00510000048167.a #37	ENSGT00950000182805.a.b
Cetacea	ANCESTRAL SPECIES	15	ENSGT00940000161718	ENSGT00940000157052	ENSGT00390000011476	ENSGT00500000044926	ENSGT00940000155447	ENSGT00390000004068	ENSGT00940000158288 #9	ENSGT00940000156602 #10	ENSGT00390000017265 #11	ENSGT00940000155996 #12	ENSGT00940000166688.a	ENSGT00940000159204 #13	ENSGT00940000160482 #16	ENSGT00940000161426 #19	ENSGT00940000160702.b #20	ENSGT00940000153430.a.b #22	ENSGT01030000234641.a.b #21	ENSGT00390000014431 #23	ENSGT00730000111063 #24	ENSGT00950000183135.B.b	ENSGT00390000009110.`b.a	ENSGT00390000000403 #26	ENSGT00940000162008 #27	ENSGT00390000008978 #28	ENSGT00940000158482 #29	ENSGT00940000157425.B #31	ENSGT00390000017746 #32	ENSGT00940000156234.f.b	ENSGT00940000157593 #33	ENSGT00700000104522 #34	ENSGT00940000161152 #35
Odontoceti	ANCESTRAL SPECIES	14	ENSGT00940000161718	ENSGT00940000157052	ENSGT00390000011476	ENSGT00500000044926	ENSGT00940000155447	ENSGT00390000004068	ENSGT00940000158288 #9	ENSGT00940000156602 #10	ENSGT00390000017265 #11	ENSGT00940000166688.a	ENSGT00940000155996 #12	ENSGT00940000159204 #13	ENSGT00940000160482 #16	ENSGT00940000161426 #19	ENSGT00940000160702.b #20	ENSGT00940000153430.a.b #22	ENSGT01030000234641.a.b #21	ENSGT00390000014431 #23	ENSGT00730000111063 #24	ENSGT00950000183135.B.b	ENSGT00390000009110.`b.a	ENSGT00390000000403 #26	ENSGT00940000162008 #27	ENSGT00390000008978 #28	ENSGT00940000158482 #29	ENSGT00940000157425.B #31	ENSGT00950000182802.A.ab.a.b	ENSGT00940000156234.f.b	ENSGT00390000017746 #32	ENSGT00940000157593 #33	ENSGT00700000104522 #34
Odontoceti_a	ANCESTRAL SPECIES	11	ENSGT00940000161718	ENSGT00940000157052	ENSGT00390000011476	ENSGT00500000044926	ENSGT00940000155447	ENSGT00390000004068	ENSGT00940000158288 #9	ENSGT00940000156602 #10	ENSGT00390000017265 #11	ENSGT00940000166688.a	ENSGT00940000155996 #12	ENSGT00940000159204 #13	ENSGT00940000160482 #16	ENSGT00940000161426 #19	ENSGT00940000160702.b #20	ENSGT00940000153430.a.b #22	ENSGT01030000234641.a.b #21	ENSGT00390000014431 #23	ENSGT00730000111063 #24	ENSGT00950000183135.B.b	ENSGT00390000000403 #26	ENSGT00940000162008 #27	ENSGT00390000008978 #28	ENSGT00940000158482 #29	ENSGT00940000157425.B #31	ENSGT00950000182802.A.ab.a.b	ENSGT00940000156234.f.b	ENSGT00390000017746 #32	ENSGT00940000157593 #33	ENSGT00700000104522 #34	ENSGT00940000161152 #35
Odontoceti_b	DUPLICATION
Odontoceti_b	ANCESTRAL SPECIES	14	ENSGT00940000161718	ENSGT00940000157052	ENSGT00390000011476	ENSGT00500000044926	ENSGT00940000155447	ENSGT00390000004068	ENSGT00940000158288 #9	ENSGT00940000156602 #10	ENSGT00390000017265 #11	ENSGT00940000166688.a	ENSGT00940000155996 #12	ENSGT00940000159204 #13	ENSGT00940000160482 #16	ENSGT00940000161426 #19	ENSGT00940000160702.b #20	ENSGT00940000153430.a.b.i #22	ENSGT01030000234641.a.b #21	ENSGT00390000014431 #23	ENSGT00730000111063 #24	ENSGT00950000183135.B.b	ENSGT00940000165624	ENSGT00390000000403 #26	ENSGT00940000162008 #27	ENSGT00390000008978 #28	ENSGT00940000158482 #29	ENSGT00940000157425.B #31	ENSGT00950000182802.A.ab.a.b	ENSGT00940000156234.f.b	ENSGT00390000017746 #32	ENSGT00940000157593 #33	ENSGT00700000104522 #34
Monodontidae	ANCESTRAL SPECIES	14	ENSGT00940000161718	ENSGT00940000157052	ENSGT00390000011476	ENSGT00500000044926	ENSGT00940000155447	ENSGT00390000004068	ENSGT00940000158288 #9	ENSGT00940000156602 #10	ENSGT00390000017265 #11	ENSGT00940000155996 #12	ENSGT00940000166688.a	ENSGT00940000159204 #13	ENSGT00940000160482 #16	ENSGT00940000161426 #19	ENSGT00940000160702.b #20	ENSGT00940000153430.a.b.i #22	ENSGT01030000234641.a.b #21	ENSGT00390000014431 #23	ENSGT00730000111063 #24	ENSGT00950000183135.B.b	ENSGT00940000165624	ENSGT00390000000403 #26	ENSGT00940000162008 #27	ENSGT00390000008978 #28	ENSGT00940000158482 #29	ENSGT00940000157425.B #31	ENSGT00950000182802.A.ab.a.b	ENSGT00940000156234.f.b	ENSGT00390000017746 #32	ENSGT00940000157593 #33	ENSGT00940000161152 #35
Narwhal	MODERN SPECIES	311	ENSMMNG00015021035	NSMCE4A (ENSMMNG00015020951)	ATE1 (ENSMMNG00015020901)	FGFR2 (ENSMMNG00015020685)	WDR11 (ENSMMNG00015020551)	PLPP4 (ENSMMNG00015020521) #9	SEC23IP (ENSMMNG00015020467) #10	ENSMMNG00015020452	MCMBP (ENSMMNG00015020433) #11	ENSMMNG00015020417	INPP5F (ENSMMNG00015020349) #12	BAG3 (ENSMMNG00015020314) #13	TIAL1 (ENSMMNG00015020292) #16	RGS10 (ENSMMNG00015020257) #19	GRK5 (ENSMMNG00015020199) #20	ENSMMNG00015020153 #22	SFXN4 (ENSMMNG00015020102) #21	DENND10 (ENSMMNG00015020070) #23	EIF3A (ENSMMNG00015019996) #24	NANOS1 (ENSMMNG00015019960)	ENSMMNG00015019942	CACUL1 (ENSMMNG00015019910) #26	PRLHR (ENSMMNG00015019892) #27	ENSMMNG00015019868 #28	RAB11FIP2 (ENSMMNG00015019844) #29	EMX2 (ENSMMNG00015019818) #31	ENSMMNG00015019806	ENSMMNG00015019793	PDZD8 (ENSMMNG00015019756) #32	SLC18A2 (ENSMMNG00015019729) #33	VAX1 (ENSMMNG00015019670) #35
Beluga whale	MODERN SPECIES	65	ENSDLEG00000019858	NSMCE4A (ENSDLEG00000007929)	ATE1 (ENSDLEG00000007967)	FGFR2 (ENSDLEG00000008001)	WDR11 (ENSDLEG00000008040)	PLPP4 (ENSDLEG00000008083) #9	SEC23IP (ENSDLEG00000008126) #10	MCMBP (ENSDLEG00000008221) #11	ENSDLEG00000008284	INPP5F (ENSDLEG00000008316) #12	ENSDLEG00000008409	BAG3 (ENSDLEG00000008440) #13	TIAL1 (ENSDLEG00000008473) #16	RGS10 (ENSDLEG00000008548) #19	GRK5 (ENSDLEG00000008572) #20	ENSDLEG00000008666 #22	SFXN4 (ENSDLEG00000008691) #21	DENND10 (ENSDLEG00000008728) #23	EIF3A (ENSDLEG00000008753) #24	NANOS1 (ENSDLEG00000008833)	ENSDLEG00000008849	CACUL1 (ENSDLEG00000008882) #26	PRLHR (ENSDLEG00000008918) #27	FAM204A (ENSDLEG00000008925) #28	RAB11FIP2 (ENSDLEG00000008945) #29	EMX2 (ENSDLEG00000008964) #31	PDZD8 (ENSDLEG00000008990) #32	ENSDLEG00000009049	ENSDLEG00000009071	SLC18A2 (ENSDLEG00000009094) #33	VAX1 (ENSDLEG00000009134) #35
Vaquita	MODERN SPECIES	7	ENSPSNG00000022440	ENSPSNG00000022404	NSMCE4A (ENSPSNG00000022375)	ATE1 (ENSPSNG00000022367)	FGFR2 (ENSPSNG00000022313)	WDR11 (ENSPSNG00000022247)	PLPP4 (ENSPSNG00000022236) #9	SEC23IP (ENSPSNG00000022208) #10	MCMBP (ENSPSNG00000022194) #11	ENSPSNG00000022181	INPP5F (ENSPSNG00000022147) #12	BAG3 (ENSPSNG00000022114) #13	TIAL1 (ENSPSNG00000022095) #16	RGS10 (ENSPSNG00000022064) #19	GRK5 (ENSPSNG00000022025) #20	ENSPSNG00000022004 #22	SFXN4 (ENSPSNG00000021957) #21	DENND10 (ENSPSNG00000021921) #23	EIF3A (ENSPSNG00000021873) #24	ENSPSNG00000021843	CACUL1 (ENSPSNG00000021830) #26	FAM204A (ENSPSNG00000021811) #28	RAB11FIP2 (ENSPSNG00000021793) #29	EMX2 (ENSPSNG00000021772) #31	ENSPSNG00000021725	PDZD8 (ENSPSNG00000021707) #32	SLC18A2 (ENSPSNG00000021681) #33	KCNK18 (ENSPSNG00000021654) #34	VAX1 (ENSPSNG00000021629) #35	SHTN1 (ENSPSNG00000021566) #37	ENO4 (ENSPSNG00000021427)
Odontoceti_b	ANCESTRAL SPECIES	7	ENSGT00940000159033	ENSGT00940000156904	ENSGT00510000049460	ENSGT00940000159873	ENSGT00390000005023.a	ENSGT01030000234816	ENSGT01090000259985.b.b.b.a.a.a	ENSGT00390000001745	ENSGT00390000017213.A	ENSGT00940000159164	ENSGT01000000214413.b.a.b.a	ENSGT00390000017343	ENSGT00940000156036	ENSGT00390000013354.d.b	ENSGT01030000234629.A	ENSGT00940000153430.a.b.j #22	ENSGT00940000159748	ENSGT00950000182805.a.a.b.a	ENSGT00940000153615.a.b	ENSGT00390000005242	ENSGT00940000159480	ENSGT00950000183070.a.a	ENSGT00390000000305	ENSGT01030000234564.b	ENSGT00940000157473	ENSGT00940000158621	ENSGT00940000162495	ENSGT00940000162526	ENSGT00950000183086.a.b	ENSGT00940000156605	ENSGT00940000155987.b
Monodontidae	ANCESTRAL SPECIES	6	ENSGT00940000159033	ENSGT00940000156904	ENSGT00510000049460	ENSGT00940000159873	ENSGT00390000005023.a	ENSGT01030000234816	ENSGT01090000259985.b.b.b.a.a.a	ENSGT00390000001745	ENSGT00390000017213.A	ENSGT00940000159164	ENSGT01000000214413.b.a.b.a	ENSGT00390000017343	ENSGT00940000156036	ENSGT00390000013354.d.b	ENSGT01030000234629.A	ENSGT00940000153430.a.b.j #22	ENSGT00940000159748	ENSGT00950000182805.a.a.b.a	ENSGT00940000153615.a.b	ENSGT00390000005242	ENSGT00940000159480	ENSGT00950000183070.a.a	ENSGT00390000000305	ENSGT01030000234564.b	ENSGT00940000157473	ENSGT00940000158621	ENSGT00940000162495	ENSGT00940000162526	ENSGT00950000183086.a.b	ENSGT00940000156605	ENSGT00940000155987.b
Narwhal	MODERN SPECIES	313	ING4 (ENSMMNG00015015173)	ZNF384 (ENSMMNG00015015269)	PIANP (ENSMMNG00015015305)	COPS7A (ENSMMNG00015015318)	MLF2 (ENSMMNG00015015337)	PTMS (ENSMMNG00015015353)	LAG3 (ENSMMNG00015015366)	CD4 (ENSMMNG00015015391)	GPR162 (ENSMMNG00015015414)	P3H3 (ENSMMNG00015015434)	GNB3 (ENSMMNG00015015448)	CDCA3 (ENSMMNG00015015481)	USP5 (ENSMMNG00015015510)	TPI1 (ENSMMNG00015015764)	SPSB2 (ENSMMNG00015015797)	ENSMMNG00015015832 #22	LRRC23 (ENSMMNG00015015931)	ENO2 (ENSMMNG00015016116)	ATN1 (ENSMMNG00015016194)	C12orf57 (ENSMMNG00015016278)	PTPN6 (ENSMMNG00015016375)	PHB2 (ENSMMNG00015016550)	EMG1 (ENSMMNG00015016611)	LPCAT3 (ENSMMNG00015016648)	C1S (ENSMMNG00015016694)	C1R (ENSMMNG00015016776)	C1RL (ENSMMNG00015016894)	ENSMMNG00015016913	CLSTN3 (ENSMMNG00015016951)	PEX5 (ENSMMNG00015016996)	CD163 (ENSMMNG00015017218)
Beluga whale	MODERN SPECIES	23	ZNF384 (ENSDLEG00000015249)	PIANP (ENSDLEG00000015302)	COPS7A (ENSDLEG00000015324)	MLF2 (ENSDLEG00000015348)	LAG3 (ENSDLEG00000015366)	CD4 (ENSDLEG00000015440)	GPR162 (ENSDLEG00000015459)	P3H3 (ENSDLEG00000015481)	ENSDLEG00000015588	ENSDLEG00000015552	ENSDLEG00000015607	ENSDLEG00000015616	USP5 (ENSDLEG00000015635)	TPI1 (ENSDLEG00000015660)	SPSB2 (ENSDLEG00000015683)	ENSDLEG00000015696 #22	LRRC23 (ENSDLEG00000015705)	ENO2 (ENSDLEG00000015736)	ATN1 (ENSDLEG00000015753)	CUNH12orf57 (ENSDLEG00000015776)	PTPN6 (ENSDLEG00000015801)	ENSDLEG00000015827	EMG1 (ENSDLEG00000015851)	LPCAT3 (ENSDLEG00000015866)	C1S (ENSDLEG00000015889)	C1R (ENSDLEG00000015916)	C1RL (ENSDLEG00000015962)	CLSTN3 (ENSDLEG00000015994)	PEX5 (ENSDLEG00000016025)	CD163 (ENSDLEG00000016084)	CLEC4E (ENSDLEG00000016164)
Vaquita	MODERN SPECIES	1	ING4 (ENSPSNG00000005989)	ZNF384 (ENSPSNG00000005851)	PIANP (ENSPSNG00000005778)	COPS7A (ENSPSNG00000005746)	MLF2 (ENSPSNG00000005707)	PTMS (ENSPSNG00000005689)	LAG3 (ENSPSNG00000005663)	CD4 (ENSPSNG00000005617)	GPR162 (ENSPSNG00000005573)	P3H3 (ENSPSNG00000005493)	GNB3 (ENSPSNG00000005442)	ENSPSNG00000005389	USP5 (ENSPSNG00000005317)	TPI1 (ENSPSNG00000005263)	SPSB2 (ENSPSNG00000005239)	ENSPSNG00000005219 #22	LRRC23 (ENSPSNG00000005175)	ENO2 (ENSPSNG00000005075)	ATN1 (ENSPSNG00000005006)	C12orf57 (ENSPSNG00000004951)	PTPN6 (ENSPSNG00000004895)	PHB2 (ENSPSNG00000004823)	EMG1 (ENSPSNG00000004766)	LPCAT3 (ENSPSNG00000004738)	C1S (ENSPSNG00000004705)	C1R (ENSPSNG00000004652)	C1RL (ENSPSNG00000004616)	ENSPSNG00000004595	CLSTN3 (ENSPSNG00000004552)	PEX5 (ENSPSNG00000004416)	CD163 (ENSPSNG00000004288)
Dolphin	MODERN SPECIES	5895																PRDX3 (ENSTTRG00000010878) #22
Sperm whale	MODERN SPECIES	688																PRDX3 (ENSPCTG00005016231) #22	ENSPCTG00005016193 #21
Blue whale	MODERN SPECIES	7	ENSBMSG00010015526	NSMCE4A (ENSBMSG00010017199)	ATE1 (ENSBMSG00010017265)	FGFR2 (ENSBMSG00010012623)	WDR11 (ENSBMSG00010012814)	PLPP4 (ENSBMSG00010012851) #9	SEC23IP (ENSBMSG00010012870) #10	MCMBP (ENSBMSG00010012893) #11	ENSBMSG00010012916	INPP5F (ENSBMSG00010012966) #12	ENSBMSG00010012993	BAG3 (ENSBMSG00010013012) #13	TIAL1 (ENSBMSG00010013032) #16	RGS10 (ENSBMSG00010013065) #19	GRK5 (ENSBMSG00010013213) #20	PRDX3 (ENSBMSG00010013313) #22	ENSBMSG00010013351 #21	DENND10 (ENSBMSG00010013398) #23	EIF3A (ENSBMSG00010013423) #24	NANOS1 (ENSBMSG00010013472)	ENSBMSG00010013481	ENSBMSG00010013493	CACUL1 (ENSBMSG00010013512) #26	PRLHR (ENSBMSG00010013527) #27	FAM204A (ENSBMSG00010013538) #28	RAB11FIP2 (ENSBMSG00010013550) #29	EMX2 (ENSBMSG00010013561) #31	ENSBMSG00010013570	PDZD8 (ENSBMSG00010013584) #32	ENSBMSG00010013682	SLC18A2 (ENSBMSG00010013731) #33
Pecora	ANCESTRAL SPECIES	12	ENSGT00390000011476	ENSGT00390000016534.B	ENSGT00500000044926	ENSGT00940000155447	ENSGT00390000004068	ENSGT00940000169826	ENSGT00940000158288 #9	ENSGT00940000156602 #10	ENSGT00390000017265 #11	ENSGT00940000166688	ENSGT00940000155996 #12	ENSGT00940000159204 #13	ENSGT00940000160482 #16	ENSGT00940000161426 #19	ENSGT00940000160702.b #20	ENSGT00940000153430.a.b #22	ENSGT01030000234641.a.b #21	ENSGT00390000014431 #23	ENSGT00730000111063 #24	ENSGT00950000183135.B.b	ENSGT00390000000403 #26	ENSGT00940000162008 #27	ENSGT00390000008978 #28	ENSGT00940000158482 #29	ENSGT00940000157425.B #31	ENSGT00390000017746 #32	ENSGT00940000157593 #33	ENSGT00700000104522 #34	ENSGT00940000161152 #35	ENSGT00510000048167.a #37	ENSGT00950000182805.a.b
Percora_a	ANCESTRAL SPECIES	14	ENSGT00940000157052	ENSGT00390000011476	ENSGT00390000016534.B	ENSGT00500000044926	ENSGT00940000155447	ENSGT00390000004068	ENSGT00940000169826	ENSGT00940000158288 #9	ENSGT00940000156602 #10	ENSGT00390000017265 #11	ENSGT00940000155996 #12	ENSGT00940000159204 #13	ENSGT00940000160482 #16	ENSGT00940000161426 #19	ENSGT00940000160702.b #20	ENSGT00940000153430.a.b #22	ENSGT01030000234641.a.b #21	ENSGT00390000014431 #23	ENSGT00730000111063 #24	ENSGT00950000183135.B.b	ENSGT00390000000403 #26	ENSGT00940000162008 #27	ENSGT00390000008978 #28	ENSGT00940000158482 #29	ENSGT00940000157425.B #31	ENSGT00390000017746 #32	ENSGT00940000157593 #33	ENSGT00700000104522 #34	ENSGT00940000161152 #35	ENSGT00510000048167.a #37	ENSGT00950000182805.a.b
Bovidae	ANCESTRAL SPECIES	24	ENSGT00940000157052	ENSGT00390000011476	ENSGT00390000016534.B	ENSGT00500000044926	ENSGT00940000155447	ENSGT00390000004068	ENSGT00940000169826	ENSGT00940000158288 #9	ENSGT00940000156602 #10	ENSGT00390000017265 #11	ENSGT00940000155996 #12	ENSGT00940000159204 #13	ENSGT00940000160482 #16	ENSGT00940000161426 #19	ENSGT00940000160702.b #20	ENSGT00940000153430.a.b #22	ENSGT01030000234641.a.b #21	ENSGT00390000014431 #23	ENSGT00730000111063 #24	ENSGT00950000183135.B.b	ENSGT00390000000403 #26	ENSGT00940000162008 #27	ENSGT00390000008978 #28	ENSGT00940000158482 #29	ENSGT00940000157425.B #31	ENSGT00390000017746 #32	ENSGT00940000157593 #33	ENSGT00700000104522 #34	ENSGT00940000161152 #35	ENSGT00510000048167.a #37	ENSGT00950000182805.a.b
Caprinae	ANCESTRAL SPECIES	19	ENSGT00940000155157	ENSGT00940000161718	ENSGT00940000157052	ENSGT00390000011476	ENSGT00500000044926	ENSGT00940000155447	ENSGT00390000004068.o	ENSGT00940000158288 #9	ENSGT00940000156602 #10	ENSGT00390000017265 #11	ENSGT00940000155996 #12	ENSGT00940000159204 #13	ENSGT00940000160482 #16	ENSGT00940000161426 #19	ENSGT00940000160702.b #20	ENSGT00940000153430.a.b #22	ENSGT01030000234641.a.b #21	ENSGT00390000014431 #23	ENSGT00730000111063 #24	ENSGT00950000183135.B.b	ENSGT00390000000403 #26	ENSGT00940000162008 #27	ENSGT00390000008978 #28	ENSGT00940000158482 #29	ENSGT00940000157425.B #31	ENSGT00390000017746 #32	ENSGT00940000157593 #33	ENSGT00700000104522 #34	ENSGT00940000161152 #35	ENSGT00510000048167.a #37	ENSGT00950000182805.a.b
Rambouillet Sheep	MODERN SPECIES	14	ENSOARG00020019110	FGFR2 (ENSOARG00020018761)	ENSOARG00020018691	WDR11 (ENSOARG00020018347)	PLPP4 (ENSOARG00020018154) #9	ENSOARG00020018072	ENSOARG00020018045	SEC23IP (ENSOARG00020017426) #10	MCMBP (ENSOARG00020017074) #11	INPP5F (ENSOARG00020014985) #12	BAG3 (ENSOARG00020014869) #13	TIAL1 (ENSOARG00020014734) #16	RGS10 (ENSOARG00020014603) #19	ENSOARG00020014577	GRK5 (ENSOARG00020014464) #20	PRDX3 (ENSOARG00020014412) #22	SFXN4 (ENSOARG00020014267) #21	DENND10 (ENSOARG00020013992) #23	ENSOARG00020013945	EIF3A (ENSOARG00020013670) #24	NANOS1 (ENSOARG00020025516)	CACUL1 (ENSOARG00020025506) #26	PRLHR (ENSOARG00020025500) #27	FAM204A (ENSOARG00020025494) #28	RAB11FIP2 (ENSOARG00020025481) #29	EMX2 (ENSOARG00020025474) #31	PDZD8 (ENSOARG00020025466) #32	SLC18A2 (ENSOARG00020025447) #33	KCNK18 (ENSOARG00020025440) #34	VAX1 (ENSOARG00020025434) #35	SHTN1 (ENSOARG00020025278) #37
Goat	MODERN SPECIES	18	BTBD16 (ENSCHIG00000021282)	TACC2 (ENSCHIG00000013177)	NSMCE4A (ENSCHIG00000015022)	ATE1 (ENSCHIG00000011980)	FGFR2 (ENSCHIG00000017963)	ENSCHIG00000003717	PLPP4 (ENSCHIG00000013810) #9	ENSCHIG00000016797	SEC23IP (ENSCHIG00000014446) #10	MCMBP (ENSCHIG00000016174) #11	INPP5F (ENSCHIG00000013653) #12	BAG3 (ENSCHIG00000019195) #13	TIAL1 (ENSCHIG00000020810) #16	RGS10 (ENSCHIG00000011045) #19	GRK5 (ENSCHIG00000003897) #20	PRDX3 (ENSCHIG00000018632) #22	SFXN4 (ENSCHIG00000011807) #21	DENND10 (ENSCHIG00000020782) #23	EIF3A (ENSCHIG00000016597) #24	NANOS1 (ENSCHIG00000004298)	CACUL1 (ENSCHIG00000012763) #26	PRLHR (ENSCHIG00000010388) #27	FAM204A (ENSCHIG00000022183) #28	RAB11FIP2 (ENSCHIG00000014924) #29	EMX2 (ENSCHIG00000023641) #31	PDZD8 (ENSCHIG00000014429) #32	SLC18A2 (ENSCHIG00000024050) #33	KCNK18 (ENSCHIG00000013853) #34	VAX1 (ENSCHIG00000001536) #35	SHTN1 (ENSCHIG00000001689) #37	ENO4 (ENSCHIG00000019329)
Bovinae	ANCESTRAL SPECIES	22	ENSGT00390000011476	ENSGT00390000016534.B	ENSGT00500000044926	ENSGT00940000155447	ENSGT00390000004068	ENSGT00940000169826	ENSGT00940000158288 #9	ENSGT00940000156602 #10	ENSGT00960000193053	ENSGT00390000017265 #11	ENSGT00940000155996 #12	ENSGT00940000159204 #13	ENSGT00940000160482 #16	ENSGT00940000161426 #19	ENSGT00940000160702.b #20	ENSGT00940000153430.a.b #22	ENSGT01030000234641.a.b #21	ENSGT00390000014431 #23	ENSGT00730000111063 #24	ENSGT00950000183135.B.b	ENSGT00390000000403 #26	ENSGT00940000162008 #27	ENSGT00390000008978 #28	ENSGT00940000158482 #29	ENSGT00940000157425.B #31	ENSGT00390000017746 #32	ENSGT00940000157593 #33	ENSGT00700000104522 #34	ENSGT00940000161152 #35	ENSGT00510000048167.a #37	ENSGT00950000182805.a.b
Bos	ANCESTRAL SPECIES	23	ENSGT00940000157052	ENSGT00390000011476	ENSGT00500000044926	ENSGT00940000155447	ENSGT00390000004068	ENSGT00940000169826	ENSGT00940000158288 #9	ENSGT00940000156602 #10	ENSGT01100000263480.a.a.b.b.b.a.a.a.a.a.a.b.a.b.b	ENSGT00390000017265 #11	ENSGT00940000155996 #12	ENSGT00940000159204 #13	ENSGT00940000160482 #16	ENSGT00940000161426 #19	ENSGT00940000160702.b #20	ENSGT00940000153430.a.b #22	ENSGT01030000234641.a.b #21	ENSGT00390000014431 #23	ENSGT00730000111063 #24	ENSGT00950000183135.B.b	ENSGT00390000000403 #26	ENSGT00940000162008 #27	ENSGT00390000008978 #28	ENSGT00940000158482 #29	ENSGT00940000157425.B #31	ENSGT00390000017746 #32	ENSGT00940000157593 #33	ENSGT00700000104522 #34	ENSGT00940000161152 #35	ENSGT00510000048167.a #37	ENSGT00950000182805.a.b
Bos_a	ANCESTRAL SPECIES	17	ENSGT00940000161718	ENSGT00940000157052	ENSGT00390000011476	ENSGT00500000044926	ENSGT00940000155447	ENSGT00390000004068	ENSGT00940000158288 #9	ENSGT00940000156602 #10	ENSGT01100000263480.a.a.b.b.b.a.a.a.a.a.a.b.a.b.b	ENSGT00390000017265 #11	ENSGT00940000155996 #12	ENSGT00940000159204 #13	ENSGT00940000160482 #16	ENSGT00940000161426 #19	ENSGT00940000160702.b #20	ENSGT00940000153430.a.b #22	ENSGT01030000234641.a.b #21	ENSGT00390000014431 #23	ENSGT00730000111063 #24	ENSGT00950000183135.B.b	ENSGT00390000000403 #26	ENSGT00940000162008 #27	ENSGT00390000008978 #28	ENSGT00940000158482 #29	ENSGT00940000157425.B #31	ENSGT00390000017746 #32	ENSGT00940000157593 #33	ENSGT00700000104522 #34	ENSGT00940000161152 #35	ENSGT00510000048167.a #37	ENSGT00950000182805.a.b
Wild yak	MODERN SPECIES	1461													TIAL1 (ENSBMUG00000007342) #16	RGS10 (ENSBMUG00000007300) #19	GRK5 (ENSBMUG00000006596) #20	PRDX3 (ENSBMUG00000006396) #22	SFXN4 (ENSBMUG00000006382) #21	DENND10 (ENSBMUG00000006357) #23	EIF3A (ENSBMUG00000006312) #24	CACUL1 (ENSBMUG00000006288) #26	PRLHR (ENSBMUG00000006267) #27	FAM204A (ENSBMUG00000006264) #28	RAB11FIP2 (ENSBMUG00000006253) #29
Domestic yak	MODERN SPECIES	17	BTBD16 (ENSBGRG00000024940)	ENSBGRG00000024000	NSMCE4A (ENSBGRG00000023734)	ATE1 (ENSBGRG00000023442)	FGFR2 (ENSBGRG00000023230)	WDR11 (ENSBGRG00000023025)	ENSBGRG00000022938 #9	SEC23IP (ENSBGRG00000022602) #10	ENSBGRG00000022579	MCMBP (ENSBGRG00000022255) #11	INPP5F (ENSBGRG00000021737) #12	BAG3 (ENSBGRG00000021665) #13	TIAL1 (ENSBGRG00000021417) #16	RGS10 (ENSBGRG00000021293) #19	GRK5 (ENSBGRG00000020547) #20	PRDX3 (ENSBGRG00000020425) #22	SFXN4 (ENSBGRG00000020303) #21	DENND10 (ENSBGRG00000020185) #23	EIF3A (ENSBGRG00000019771) #24	NANOS1 (ENSBGRG00000019738)	CACUL1 (ENSBGRG00000019540) #26	PRLHR (ENSBGRG00000019512) #27	FAM204A (ENSBGRG00000019441) #28	RAB11FIP2 (ENSBGRG00000019403) #29	ENSBGRG00000019389	EMX2 (ENSBGRG00000019351) #31	PDZD8 (ENSBGRG00000019307) #32	SLC18A2 (ENSBGRG00000019173) #33	KCNK18 (ENSBGRG00000019135) #34	VAX1 (ENSBGRG00000019107) #35	SHTN1 (ENSBGRG00000018522) #37
Bos_b	ANCESTRAL SPECIES	23	ENSGT00940000157052	ENSGT00390000011476	ENSGT00500000044926	ENSGT00940000155447	ENSGT00390000004068	ENSGT00940000169826	ENSGT00940000158288 #9	ENSGT00940000156602 #10	ENSGT01100000263480.a.a.b.b.b.a.a.a.a.a.a.b.a.b.b	ENSGT00390000017265 #11	ENSGT00940000155996 #12	ENSGT00940000159204 #13	ENSGT00940000160482 #16	ENSGT00940000161426 #19	ENSGT00940000160702.b #20	ENSGT00940000153430.a.b #22	ENSGT01030000234641.a.b #21	ENSGT00390000014431 #23	ENSGT00730000111063 #24	ENSGT00950000183135.B.b	ENSGT00390000000403 #26	ENSGT00940000162008 #27	ENSGT00390000008978 #28	ENSGT00940000158482 #29	ENSGT00940000157425.B #31	ENSGT00390000017746 #32	ENSGT00940000157593 #33	ENSGT00700000104522 #34	ENSGT00940000161152 #35	ENSGT00510000048167.a #37	ENSGT00950000182805.a.b
Cow	MODERN SPECIES	18	TACC2 (ENSBTAG00000010786)	NSMCE4A (ENSBTAG00000019166)	ATE1 (ENSBTAG00000003178)	FGFR2 (ENSBTAG00000014064)	WDR11 (ENSBTAG00000021540)	ENSBTAG00000049781	PLPP4 (ENSBTAG00000032106) #9	SEC23IP (ENSBTAG00000007441) #10	ENSBTAG00000048455	MCMBP (ENSBTAG00000009877) #11	INPP5F (ENSBTAG00000021801) #12	BAG3 (ENSBTAG00000013641) #13	TIAL1 (ENSBTAG00000004080) #16	RGS10 (ENSBTAG00000002647) #19	GRK5 (ENSBTAG00000007981) #20	PRDX3 (ENSBTAG00000008731) #22	SFXN4 (ENSBTAG00000008730) #21	DENND10 (ENSBTAG00000008729) #23	EIF3A (ENSBTAG00000002528) #24	NANOS1 (ENSBTAG00000052883)	CACUL1 (ENSBTAG00000022808) #26	PRLHR (ENSBTAG00000047842) #27	FAM204A (ENSBTAG00000005057) #28	RAB11FIP2 (ENSBTAG00000007460) #29	EMX2 (ENSBTAG00000003027) #31	PDZD8 (ENSBTAG00000011401) #32	SLC18A2 (ENSBTAG00000004739) #33	KCNK18 (ENSBTAG00000015062) #34	VAX1 (ENSBTAG00000013875) #35	SHTN1 (ENSBTAG00000007578) #37	ENO4 (ENSBTAG00000004330)
Hybrid Bos Indicus	MODERN SPECIES	18	PLEKHA1 (ENSBIXG00005021579)	BTBD16 (ENSBIXG00005003629)	TACC2 (ENSBIXG00005003615)	NSMCE4A (ENSBIXG00005021235)	ATE1 (ENSBIXG00005021194)	FGFR2 (ENSBIXG00005003546)	WDR11 (ENSBIXG00005003481)	PLPP4 (ENSBIXG00005020504) #9	SEC23IP (ENSBIXG00005003449) #10	MCMBP (ENSBIXG00005020337) #11	INPP5F (ENSBIXG00005020287) #12	BAG3 (ENSBIXG00005020191) #13	TIAL1 (ENSBIXG00005003333) #16	RGS10 (ENSBIXG00005020105) #19	GRK5 (ENSBIXG00005020062) #20	PRDX3 (ENSBIXG00005020003) #22	SFXN4 (ENSBIXG00005019982) #21	DENND10 (ENSBIXG00005019929) #23	EIF3A (ENSBIXG00005019889) #24	NANOS1 (ENSBIXG00005019834)	CACUL1 (ENSBIXG00005019793) #26	FAM204A (ENSBIXG00005019733) #28	RAB11FIP2 (ENSBIXG00005003218) #29	EMX2 (ENSBIXG00005019671) #31	PDZD8 (ENSBIXG00005019643) #32	SLC18A2 (ENSBIXG00005019615) #33	KCNK18 (ENSBIXG00005006609) #34	VAX1 (ENSBIXG00005019565) #35	SHTN1 (ENSBIXG00005019502) #37	ENO4 (ENSBIXG00005019425)	HSPA12A (ENSBIXG00005019246)
American bison	MODERN SPECIES	3316	ENSBBBG00000010608	NSMCE4A (ENSBBBG00000010442)	ENSBBBG00000010432	ATE1 (ENSBBBG00000010422)	FGFR2 (ENSBBBG00000010374)	WDR11 (ENSBBBG00000010323)	PLPP4 (ENSBBBG00000010305) #9	SEC23IP (ENSBBBG00000010295) #10	ENSBBBG00000010282	MCMBP (ENSBBBG00000010269) #11	INPP5F (ENSBBBG00000000062) #12	BAG3 (ENSBBBG00000010215) #13	TIAL1 (ENSBBBG00000010202) #16	RGS10 (ENSBBBG00000010192) #19	GRK5 (ENSBBBG00000010180) #20	PRDX3 (ENSBBBG00000007205) #22	SFXN4 (ENSBBBG00000010140) #21	DENND10 (ENSBBBG00000010129) #23	EIF3A (ENSBBBG00000010118) #24	CACUL1 (ENSBBBG00000010099) #26	PRLHR (ENSBBBG00000010095) #27	FAM204A (ENSBBBG00000010092) #28	RAB11FIP2 (ENSBBBG00000001707) #29	PDZD8 (ENSBBBG00000010080) #32	SLC18A2 (ENSBBBG00000010077) #33	KCNK18 (ENSBBBG00000010068) #34	VAX1 (ENSBBBG00000010067) #35	SHTN1 (ENSBBBG00000010058) #37	ENO4 (ENSBBBG00000001697)	HSPA12A (ENSBBBG00000001683)	C10orf82 (ENSBBBG00000001667)
Siberian musk deer	MODERN SPECIES	1161	NSMCE4A (ENSMMSG00000015672)	ATE1 (ENSMMSG00000015713)	FGFR2 (ENSMMSG00000016023)	WDR11 (ENSMMSG00000016506)	PLPP4 (ENSMMSG00000016645) #9	ENSMMSG00000016717	ENSMMSG00000016738	SEC23IP (ENSMMSG00000016779) #10	MCMBP (ENSMMSG00000016915) #11	INPP5F (ENSMMSG00000016998) #12	BAG3 (ENSMMSG00000017210) #13	ENSMMSG00000017248 #16	RGS10 (ENSMMSG00000017368) #19	GRK5 (ENSMMSG00000017460) #20	ENSMMSG00000017543	PRDX3 (ENSMMSG00000017559) #22	SFXN4 (ENSMMSG00000017594) #21	DENND10 (ENSMMSG00000017673) #23	EIF3A (ENSMMSG00000017725) #24	NANOS1 (ENSMMSG00000017830)	ENSMMSG00000017843	CACUL1 (ENSMMSG00000017863) #26	PRLHR (ENSMMSG00000017899) #27	ENSMMSG00000017914 #28	RAB11FIP2 (ENSMMSG00000017974) #29	EMX2 (ENSMMSG00000018013) #31	PDZD8 (ENSMMSG00000018042) #32	SLC18A2 (ENSMMSG00000018068) #33	KCNK18 (ENSMMSG00000018163) #34	VAX1 (ENSMMSG00000018189) #35	SHTN1 (ENSMMSG00000018262) #37
Yarkand deer	MODERN SPECIES	6	NSMCE4A (ENSCHYG00000010654)	ENSCHYG00000010624	ATE1 (ENSCHYG00000010156)	FGFR2 (ENSCHYG00000008730)	WDR11 (ENSCHYG00000008551)	ENSCHYG00000008531	PLPP4 (ENSCHYG00000008482) #9	SEC23IP (ENSCHYG00000008365) #10	MCMBP (ENSCHYG00000008251) #11	ENSCHYG00000008228	INPP5F (ENSCHYG00000008007) #12	BAG3 (ENSCHYG00000007937) #13	TIAL1 (ENSCHYG00000007795) #16	RGS10 (ENSCHYG00000007690) #19	GRK5 (ENSCHYG00000007383) #20	PRDX3 (ENSCHYG00000007298) #22	SFXN4 (ENSCHYG00000007221) #21	DENND10 (ENSCHYG00000007162) #23	ENSCHYG00000007151	EIF3A (ENSCHYG00000007026) #24	NANOS1 (ENSCHYG00000007001)	CACUL1 (ENSCHYG00000006987) #26	PRLHR (ENSCHYG00000020940) #27	FAM204A (ENSCHYG00000020842) #28	RAB11FIP2 (ENSCHYG00000020785) #29	EMX2 (ENSCHYG00000020758) #31	PDZD8 (ENSCHYG00000020597) #32	SLC18A2 (ENSCHYG00000020488) #33	KCNK18 (ENSCHYG00000020450) #34	ENSCHYG00000020376 #35	SHTN1 (ENSCHYG00000020033) #37
Laurasiatheria_b	ANCESTRAL SPECIES	15	ENSGT00940000157052	ENSGT00390000011476	ENSGT00390000016534.B	ENSGT00500000044926	ENSGT00940000155447	ENSGT00390000004068	ENSGT00940000158288 #9	ENSGT00940000156602 #10	ENSGT00390000017265 #11	ENSGT00960000190376	ENSGT00940000155996 #12	ENSGT00940000159204 #13	ENSGT00940000160482 #16	ENSGT00940000161426 #19	ENSGT00940000160702.b #20	ENSGT00940000153430.a.b #22	ENSGT01030000234641.a.b #21	ENSGT00390000014431 #23	ENSGT00730000111063 #24	ENSGT00950000183135.B.b	ENSGT00390000000403 #26	ENSGT00940000162008 #27	ENSGT00390000008978 #28	ENSGT00390000010476	ENSGT00940000158482 #29	ENSGT00940000157425.B #31	ENSGT00390000017746 #32	ENSGT00940000157593 #33	ENSGT00700000104522 #34	ENSGT00940000161152 #35	ENSGT00510000048167.a #37
Laurasiatheria_c	ANCESTRAL SPECIES	15	ENSGT00940000157052	ENSGT00390000011476	ENSGT00390000016534.B	ENSGT00500000044926	ENSGT00940000155447	ENSGT00390000004068	ENSGT00940000158288 #9	ENSGT00940000156602 #10	ENSGT00390000017265 #11	ENSGT00960000190376	ENSGT00940000155996 #12	ENSGT00940000159204 #13	ENSGT00940000160482 #16	ENSGT00940000161426 #19	ENSGT00940000160702.b #20	ENSGT00940000153430.a.b #22	ENSGT01030000234641.a.b #21	ENSGT00390000014431 #23	ENSGT00730000111063 #24	ENSGT00950000183135.B.b	ENSGT00390000000403 #26	ENSGT00940000162008 #27	ENSGT00390000008978 #28	ENSGT00940000158482 #29	ENSGT00940000157425.B #31	ENSGT00390000017746 #32	ENSGT00940000157593 #33	ENSGT00700000104522 #34	ENSGT00940000161152 #35	ENSGT00510000048167.a #37	ENSGT00950000182805.a.b
Equus	ANCESTRAL SPECIES	9	ENSGT00940000157052	ENSGT00390000011476	ENSGT00390000016534.B	ENSGT00500000044926	ENSGT00940000155447	ENSGT00390000004068	ENSGT00940000158288 #9	ENSGT00940000156602 #10	ENSGT00390000017265 #11	ENSGT00960000190376	ENSGT00940000155996 #12	ENSGT00940000159204 #13	ENSGT00940000160482 #16	ENSGT00940000161426 #19	ENSGT00940000160702.b #20	ENSGT00940000153430.a.b #22	ENSGT01030000234641.a.b #21	ENSGT00390000014431 #23	ENSGT00730000111063 #24	ENSGT00950000183135.B.b	ENSGT00390000000403 #26	ENSGT00940000162008 #27	ENSGT00390000008978 #28	ENSGT00940000158482 #29	ENSGT00940000157425.B #31	ENSGT00390000017746 #32	ENSGT00940000157593 #33	ENSGT00700000104522 #34	ENSGT00940000161152 #35	ENSGT00510000048167.a #37	ENSGT00950000182805.a.b
Donkey	DUPLICATION
Donkey	MODERN SPECIES	11	NSMCE4A (ENSEASG00005014412)	ENSEASG00005014414	ATE1 (ENSEASG00005014421)	FGFR2 (ENSEASG00005014428)	WDR11 (ENSEASG00005014435)	PLPP4 (ENSEASG00005014441) #9	SEC23IP (ENSEASG00005014443) #10	MCMBP (ENSEASG00005014444) #11	ENSEASG00005038260	INPP5F (ENSEASG00005014445) #12	BAG3 (ENSEASG00005014448) #13	TIAL1 (ENSEASG00005014449) #16	RGS10 (ENSEASG00005038309) #19	GRK5 (ENSEASG00005014452) #20	ENSEASG00005036811	ENSEASG00005014455 #22	SFXN4 (ENSEASG00005014456) #21	DENND10 (ENSEASG00005014457) #23	EIF3A (ENSEASG00005014459) #24	NANOS1 (ENSEASG00005024606)	CACUL1 (ENSEASG00005014469) #26	PRLHR (ENSEASG00005014473) #27	FAM204A (ENSEASG00005014474) #28	RAB11FIP2 (ENSEASG00005014475) #29	EMX2 (ENSEASG00005014478) #31	PDZD8 (ENSEASG00005014486) #32	SLC18A2 (ENSEASG00005014491) #33	KCNK18 (ENSEASG00005014501) #34	VAX1 (ENSEASG00005014505) #35	SHTN1 (ENSEASG00005014511) #37	ENO4 (ENSEASG00005014520)
Donkey	MODERN SPECIES	3	IL5 (ENSEASG00005017855)	RAD50 (ENSEASG00005016481)	IL13 (ENSEASG00005026317)	ENSEASG00005017875	KIF3A (ENSEASG00005017941)	ENSEASG00005027696	SEPTIN8 (ENSEASG00005018336)	SOWAHA (ENSEASG00005025428)	SHROOM1 (ENSEASG00005018346)	GDF9 (ENSEASG00005024265)	ENSEASG00005035424	LEAP2 (ENSEASG00005024445)	AFF4 (ENSEASG00005018361)	ZCCHC10 (ENSEASG00005037597)	HSPA4 (ENSEASG00005018382)	ENSEASG00005025760 #22	FSTL4 (ENSEASG00005018409)	C5orf15 (ENSEASG00005018451)	VDAC1 (ENSEASG00005018462)	TCF7 (ENSEASG00005018474)	SKP1 (ENSEASG00005037065)	PPP2CA (ENSEASG00005037929)	CDKL3 (ENSEASG00005018501)	UBE2B (ENSEASG00005030009)	CDKN2AIPNL (ENSEASG00005026846)	ENSEASG00005031046 ##25	JADE2 (ENSEASG00005018548)	SAR1B (ENSEASG00005018603)	SEC24A (ENSEASG00005018668)	CAMLG (ENSEASG00005027453)	DDX46 (ENSEASG00005020329)
Horse	MODERN SPECIES		TACC2 (ENSECAG00000018280)	BTBD16 (ENSECAG00000008814)	NSMCE4A (ENSECAG00000016651)	ATE1 (ENSECAG00000012383)	FGFR2 (ENSECAG00000013960)	WDR11 (ENSECAG00000019673)	PLPP4 (ENSECAG00000023526) #9	SEC23IP (ENSECAG00000000536) #10	MCMBP (ENSECAG00000015061) #11	INPP5F (ENSECAG00000014941) #12	ENSECAG00000032636	TIAL1 (ENSECAG00000009970) #16	RGS10 (ENSECAG00000023632) #19	GRK5 (ENSECAG00000023764) #20	ENSECAG00000035538	PRDX3 (ENSECAG00000017026) #22	SFXN4 (ENSECAG00000012309) #21	DENND10 (ENSECAG00000013713) #23	EIF3A (ENSECAG00000021880) #24	NANOS1 (ENSECAG00000003656)	CACUL1 (ENSECAG00000013139) #26	PRLHR (ENSECAG00000003701) #27	FAM204A (ENSECAG00000019024) #28	RAB11FIP2 (ENSECAG00000019791) #29	EMX2 (ENSECAG00000031152) #31	PDZD8 (ENSECAG00000023468) #32	SLC18A2 (ENSECAG00000024054) #33	KCNK18 (ENSECAG00000037881) #34	VAX1 (ENSECAG00000023955) #35	SHTN1 (ENSECAG00000007373) #37	ENO4 (ENSECAG00000013196)
Chiroptera	ANCESTRAL SPECIES	6	ENSGT00940000161718	ENSGT00940000157052	ENSGT00390000011476	ENSGT00390000016534.B	ENSGT00500000044926	ENSGT00940000155447.r	ENSGT00390000004068	ENSGT00940000158288 #9	ENSGT00940000156602 #10	ENSGT00390000017265 #11	ENSGT00940000155996 #12	ENSGT00940000159204 #13	ENSGT00940000160482 #16	ENSGT00940000161426 #19	ENSGT00940000160702.b #20	ENSGT00940000153430.a.b #22	ENSGT01030000234641.a.b #21	ENSGT00390000014431 #23	ENSGT00730000111063 #24	ENSGT00950000183135.B.b	ENSGT00390000000403 #26	ENSGT00940000162008 #27	ENSGT00390000008978 #28	ENSGT00940000158482 #29	ENSGT00940000157425.B #31	ENSGT00390000017746 #32	ENSGT00940000157593 #33	ENSGT00700000104522 #34	ENSGT00940000161152 #35	ENSGT00510000048167.a #37	ENSGT00950000182805.a.b
Megabat	MODERN SPECIES	2960														RGS10 (ENSPVAG00000003163) #19	GRK5 (ENSPVAG00000003161) #20	PRDX3 (ENSPVAG00000003158) #22	ENSPVAG00000003156 #21	DENND10 (ENSPVAG00000003151) #23	EIF3A (ENSPVAG00000003148) #24	NANOS1 (ENSPVAG00000003146)
Microchiroptera	ANCESTRAL SPECIES	5	ENSGT00940000161718	ENSGT00940000157052	ENSGT00390000011476	ENSGT00390000016534.B	ENSGT00500000044926	ENSGT00940000155447.r	ENSGT00390000004068	ENSGT00940000158288 #9	ENSGT00940000156602 #10	ENSGT00390000017265 #11	ENSGT00940000155996 #12	ENSGT00940000159204 #13	ENSGT00940000160482 #16	ENSGT00940000161426 #19	ENSGT00940000160702.b #20	ENSGT00940000153430.a.b #22	ENSGT01030000234641.a.b #21	ENSGT00390000014431 #23	ENSGT00730000111063 #24	ENSGT00950000183135.B.b	ENSGT00390000000403 #26	ENSGT00940000162008 #27	ENSGT00390000008978 #28	ENSGT00940000158482 #29	ENSGT00940000157425.B #31	ENSGT00390000017746 #32	ENSGT00940000157593 #33	ENSGT00700000104522 #34	ENSGT00940000161152 #35	ENSGT00510000048167.a #37	ENSGT00950000182805.a.b
Greater horseshoe bat	MODERN SPECIES	7	BTBD16 (ENSRFEG00010010148)	TACC2 (ENSRFEG00010010381)	NSMCE4A (ENSRFEG00010010935)	ENSRFEG00010010986	ATE1 (ENSRFEG00010011030)	FGFR2 (ENSRFEG00010011408)	WDR11 (ENSRFEG00010011888)	PLPP4 (ENSRFEG00010011968) #9	SEC23IP (ENSRFEG00010012086) #10	MCMBP (ENSRFEG00010012192) #11	INPP5F (ENSRFEG00010012275) #12	BAG3 (ENSRFEG00010012499) #13	TIAL1 (ENSRFEG00010012554) #16	RGS10 (ENSRFEG00010012645) #19	GRK5 (ENSRFEG00010012799) #20	PRDX3 (ENSRFEG00010012853) #22	SFXN4 (ENSRFEG00010012886) #21	DENND10 (ENSRFEG00010013102) #23	EIF3A (ENSRFEG00010013169) #24	NANOS1 (ENSRFEG00010013284)	CACUL1 (ENSRFEG00010013309) #26	PRLHR (ENSRFEG00010013380) #27	RAB11FIP2 (ENSRFEG00010013676) #29	EMX2 (ENSRFEG00010013738) #31	PDZD8 (ENSRFEG00010013773) #32	SLC18A2 (ENSRFEG00010013808) #33	VAX1 (ENSRFEG00010013860) #35	SHTN1 (ENSRFEG00010005393) #37	ENO4 (ENSRFEG00010005528)	HSPA12A (ENSRFEG00010005760)	PNLIPRP2 (ENSRFEG00010005991)
Microbat	MODERN SPECIES	1282														ENSMLUG00000006062	GRK5 (ENSMLUG00000003608) #20	PRDX3 (ENSMLUG00000012871) #22	SFXN4 (ENSMLUG00000012860) #21	DENND10 (ENSMLUG00000012854) #23	EIF3A (ENSMLUG00000005771) #24	ENSMLUG00000026243	CACUL1 (ENSMLUG00000002860) #26	ENSMLUG00000027454 #28	RAB11FIP2 (ENSMLUG00000015200) #29
Carnivora	ANCESTRAL SPECIES	16	ENSGT00940000161718	ENSGT00940000157052	ENSGT00390000011476	ENSGT00390000016534.B	ENSGT00500000044926	ENSGT00940000155447	ENSGT00390000004068	ENSGT00940000158288 #9	ENSGT00940000156602 #10	ENSGT00390000017265 #11	ENSGT00940000155996 #12	ENSGT00940000159204 #13	ENSGT00940000160482 #16	ENSGT00940000161426 #19	ENSGT00940000160702.b #20	ENSGT00940000153430.a.b #22	ENSGT01030000234641.a.b #21	ENSGT00390000014431 #23	ENSGT00730000111063 #24	ENSGT00950000183135.B.b	ENSGT00390000000403 #26	ENSGT00940000162008 #27	ENSGT00390000008978 #28	ENSGT00390000010476	ENSGT00940000158482 #29	ENSGT00940000157425.B #31	ENSGT00390000017746 #32	ENSGT00940000157593 #33	ENSGT00700000104522 #34	ENSGT00940000161152 #35	ENSGT00510000048167.a #37
Caniformia	ANCESTRAL SPECIES	13	ENSGT00940000161718	ENSGT00940000157052	ENSGT00390000011476	ENSGT00390000016534.B	ENSGT00500000044926	ENSGT00940000155447	ENSGT00390000004068	ENSGT00940000158288 #9	ENSGT00940000156602 #10	ENSGT00390000017265 #11	ENSGT00940000155996 #12	ENSGT00940000159204 #13	ENSGT00940000160482 #16	ENSGT00940000161426 #19	ENSGT00940000160702.b #20	ENSGT00940000153430.a.b #22	ENSGT01030000234641.a.b #21	ENSGT00390000014431 #23	ENSGT00730000111063 #24	ENSGT00950000183135.B.b	ENSGT00390000000403 #26	ENSGT00940000162008 #27	ENSGT00390000008978 #28	ENSGT00940000158482 #29	ENSGT00940000157425.B #31	ENSGT00390000017746 #32	ENSGT00940000157593 #33	ENSGT00700000104522 #34	ENSGT00940000161152 #35	ENSGT00510000048167.a #37	ENSGT00950000182805.a.b
Canidae	DUPLICATION
Canidae	ANCESTRAL SPECIES																	ENSGT00940000153430.a.b.m #22
Canis_lupus	DUPLICATION
Canis_lupus	ANCESTRAL SPECIES	29	ENSGT00940000160059.a.a	ENSGT00940000153458.A	ENSGT00950000185351	ENSGT00390000007809.b	ENSGT00390000003759	ENSGT00940000159119.b	ENSGT00390000004871.b.k.a.b	ENSGT00530000063891	ENSGT00940000161119	ENSGT00940000159935	ENSGT00580000081600.c.a	ENSGT01010000222287.B.a.b.a	ENSGT00940000155757	ENSGT00940000156280	ENSGT00900000143483	ENSGT00940000153430.a.b.m.a #22	ENSGT00940000158304	ENSGT00390000020445	ENSGT00940000163221	ENSGT00940000155281	ENSGT00940000158227	ENSGT00940000162156	ENSGT00950000183019.f.a	ENSGT00940000159945	ENSGT00940000159301	ENSGT00940000161049	ENSGT00390000010557	ENSGT00940000158945	ENSGT01050000244857.B.a	ENSGT00630000089910	ENSGT01100000263569.a.a.f.a
Dog	MODERN SPECIES	7	UBE3C (ENSCAFG00845013835)	MNX1 (ENSCAFG00845013721)	ENSCAFG00845013708	NOM1 (ENSCAFG00845013684)	LMBR1 (ENSCAFG00845013513)	RNF32 (ENSCAFG00845013361)	SHH (ENSCAFG00845013237)	ENSCAFG00845013219	RBM33 (ENSCAFG00845013111)	ENSCAFG00845013046	EN2 (ENSCAFG00845013024)	INSIG1 (ENSCAFG00845012993)	HTR5A (ENSCAFG00845012951)	PAXIP1 (ENSCAFG00845012859)	DPP6 (ENSCAFG00845012287)	ENSCAFG00845011964 #22	ACTR3B (ENSCAFG00845011785)	XRCC2 (ENSCAFG00845011729)	CCT8L2 (ENSCAFG00845011714)	ENSCAFG00845011655	GALNT11 (ENSCAFG00845011586)	GALNTL5 (ENSCAFG00845011511)	ENSCAFG00845011458	PRKAG2 (ENSCAFG00845011242)	RHEB (ENSCAFG00845011138)	CRYGN (ENSCAFG00845011093)	ENSCAFG00845011044	NUB1 (ENSCAFG00845010982)	SMARCD3 (ENSCAFG00845010900)	CHPF2 (ENSCAFG00845010813)	ABCF2 (ENSCAFG00845010733)
Dingo	MODERN SPECIES	77	NOM1 (ENSCAFG00020005121)	ENSCAFG00020005139	LMBR1 (ENSCAFG00020005146)	RNF32 (ENSCAFG00020005170)	SHH (ENSCAFG00020005208)	ENSCAFG00020005221	ENSCAFG00020005230	ENSCAFG00020005234	ENSCAFG00020005253	EN2 (ENSCAFG00020005257)	INSIG1 (ENSCAFG00020005265)	HTR5A (ENSCAFG00020005282)	PAXIP1 (ENSCAFG00020005286)	DPP6 (ENSCAFG00020005314)	ENSCAFG00020005333	ENSCAFG00020005341 #22	ENSCAFG00020005358	XRCC2 (ENSCAFG00020005366)	CCT8L2 (ENSCAFG00020005377)	KMT2C (ENSCAFG00020005391)	GALNT11 (ENSCAFG00020005465)	ENSCAFG00020005481	ENSCAFG00020005486	PRKAG2 (ENSCAFG00020005497)	RHEB (ENSCAFG00020005505)	CRYGN (ENSCAFG00020005512)	ENSCAFG00020005513	NUB1 (ENSCAFG00020005516)	SMARCD3 (ENSCAFG00020005525)	CHPF2 (ENSCAFG00020005543)	ABCF2 (ENSCAFG00020005588)
Canis_lupus	ANCESTRAL SPECIES	46	ENSGT00950000182837.b.b	ENSGT00940000154714	ENSGT00940000154533.b.d	ENSGT00390000012204	ENSGT00940000157201	ENSGT00530000063686.a.a	ENSGT00390000007539.i.b.a.db.b.b	ENSGT00940000157541	ENSGT00390000009819.a.b.b	ENSGT00390000015050	ENSGT00390000000220.B	ENSGT00390000000220.A	ENSGT00940000158539	ENSGT00940000158526	ENSGT00530000064137.a.b	ENSGT00940000153430.a.b.m.b #22	ENSGT00390000016542	ENSGT00940000157233	ENSGT00950000183208.A.c.a	ENSGT00900000143214	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00940000157521.b	ENSGT00900000141555	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F
Dingo	MODERN SPECIES	101	RIF1 (ENSCAFG00020016401)	TNFAIP6 (ENSCAFG00020016399)	NMI (ENSCAFG00020016395)	ENSCAFG00020016392	ENSCAFG00020016388	RND3 (ENSCAFG00020016386)	ENSCAFG00020016382	MMADHC (ENSCAFG00020016380)	LYPD6 (ENSCAFG00020016377)	ENSCAFG00020016375	ENSCAFG00020016369	KIF5C (ENSCAFG00020016358)	ENSCAFG00020016356	EPC2 (ENSCAFG00020016353)	MBD5 (ENSCAFG00020016351)	ENSCAFG00020016350 #22	ENSCAFG00020016348	ORC4 (ENSCAFG00020016340)	ACVR2A (ENSCAFG00020016337)	ZEB2 (ENSCAFG00020016311)	ENSCAFG00020016307	GTDC1 (ENSCAFG00020016302)	ARHGAP15 (ENSCAFG00020016269)	KYNU (ENSCAFG00020016256)	ENSCAFG00020016252	LRP1B (ENSCAFG00020016211)	ENSCAFG00020016205	NXPH2 (ENSCAFG00020016197)	SPOPL (ENSCAFG00020016186)	HNMT (ENSCAFG00020016185)	THSD7B (ENSCAFG00020016172)
Dog	MODERN SPECIES	10	CACNB4 (ENSCAFG00845010078)	ARL5A (ENSCAFG00845009827)	NEB (ENSCAFG00845009157)	RIF1 (ENSCAFG00845008561)	TNFAIP6 (ENSCAFG00845008460)	NMI (ENSCAFG00845008371)	ENSCAFG00845008302	RND3 (ENSCAFG00845008171)	ENSCAFG00845008096	MMADHC (ENSCAFG00845007815)	LYPD6 (ENSCAFG00845007742)	LYPD6B (ENSCAFG00845007654)	KIF5C (ENSCAFG00845007529)	ENSCAFG00845007463	EPC2 (ENSCAFG00845007263)	ENSCAFG00845007155 #22	MBD5 (ENSCAFG00845006841)	ENSCAFG00845006609	ORC4 (ENSCAFG00845006436)	ACVR2A (ENSCAFG00845006266)	ZEB2 (ENSCAFG00845006084)	GTDC1 (ENSCAFG00845013883)	ARHGAP15 (ENSCAFG00845013638)	KYNU (ENSCAFG00845013520)	ENSCAFG00845013470	ENSCAFG00845013421	ENSCAFG00845013405	LRP1B (ENSCAFG00845011094)	NXPH2 (ENSCAFG00845010560)	SPOPL (ENSCAFG00845010518)	HNMT (ENSCAFG00845010412)
Red fox	MODERN SPECIES		NSMCE4A (ENSVVUG00000011499)	ENSVVUG00000011488	ATE1 (ENSVVUG00000011469)	FGFR2 (ENSVVUG00000011385)	WDR11 (ENSVVUG00000011299)	ENSVVUG00000011295	PLPP4 (ENSVVUG00000011275) #9	ENSVVUG00000011255	SEC23IP (ENSVVUG00000011215) #10	MCMBP (ENSVVUG00000011144) #11	INPP5F (ENSVVUG00000011092) #12	BAG3 (ENSVVUG00000011045) #13	TIAL1 (ENSVVUG00000011029) #16	RGS10 (ENSVVUG00000011012)	GRK5 (ENSVVUG00000010990) #20	ENSVVUG00000010962 #22	SFXN4 (ENSVVUG00000010952) #21	DENND10 (ENSVVUG00000010922) #23	EIF3A (ENSVVUG00000010853) #24	CACUL1 (ENSVVUG00000010846) #26	PRLHR (ENSVVUG00000010804) #27	ENSVVUG00000010800	FAM204A (ENSVVUG00000010781) #28	RAB11FIP2 (ENSVVUG00000010728) #29	EMX2 (ENSVVUG00000010674) #31	PDZD8 (ENSVVUG00000010661) #32	SLC18A2 (ENSVVUG00000010653) #33	KCNK18 (ENSVVUG00000010649) #34	SHTN1 (ENSVVUG00000010591) #37	ENO4 (ENSVVUG00000010551)	HSPA12A (ENSVVUG00000010543)
Canidae	ANCESTRAL SPECIES	16	ENSGT00940000157052	ENSGT00390000011476	ENSGT00390000016534.B	ENSGT00500000044926	ENSGT00940000155447	ENSGT00390000004068	ENSGT00940000158288 #9	ENSGT00940000163657	ENSGT00940000156602 #10	ENSGT00390000017265 #11	ENSGT00940000155996 #12	ENSGT00940000159204 #13	ENSGT00940000160482 #16	ENSGT00940000161426 #19	ENSGT00940000160702.b #20	ENSGT00940000153430.a.b.n #22	ENSGT01030000234641.a.b #21	ENSGT00390000014431 #23	ENSGT00730000111063 #24	ENSGT00950000183135.B.b	ENSGT00390000000403 #26	ENSGT00940000162008 #27	ENSGT00390000008978 #28	ENSGT00940000158482 #29	ENSGT00940000157425.B #31	ENSGT00390000017746 #32	ENSGT00940000157593 #33	ENSGT00700000104522 #34	ENSGT00940000161152 #35	ENSGT00510000048167.a #37	ENSGT00950000182805.a.b
Canis_lupus	ANCESTRAL SPECIES	20	ENSGT00390000011476	ENSGT00390000016534.B	ENSGT00500000044926	ENSGT00940000155447	ENSGT00390000004068	ENSGT00940000158288 #9	ENSGT00940000163657.f	ENSGT00390000004380.e.a.a	ENSGT00940000156602 #10	ENSGT00390000017265 #11	ENSGT00940000155996 #12	ENSGT00940000159204 #13	ENSGT00940000160482 #16	ENSGT00940000161426 #19	ENSGT00940000160702.b #20	ENSGT00940000153430.a.b.n #22	ENSGT01030000234641.a.b #21	ENSGT00390000014431 #23	ENSGT00730000111063 #24	ENSGT00950000183135.B.b	ENSGT00390000000403 #26	ENSGT00940000162008 #27	ENSGT00390000008978 #28	ENSGT00940000158482 #29	ENSGT00940000157425.B #31	ENSGT00390000017746 #32	ENSGT00940000157593 #33	ENSGT00700000104522 #34	ENSGT00940000161152 #35	ENSGT00510000048167.a #37	ENSGT00950000182805.a.b
Dingo	MODERN SPECIES	165	ENSCAFG00020014819	ENSCAFG00020014813	ATE1 (ENSCAFG00020014791)	FGFR2 (ENSCAFG00020014779)	WDR11 (ENSCAFG00020014683)	PLPP4 (ENSCAFG00020014668) #9	ENSCAFG00020014666	ENSCAFG00020014663	SEC23IP (ENSCAFG00020014659) #10	MCMBP (ENSCAFG00020014655) #11	INPP5F (ENSCAFG00020013935) #12	BAG3 (ENSCAFG00020013893) #13	TIAL1 (ENSCAFG00020013891) #16	RGS10 (ENSCAFG00020013888) #19	GRK5 (ENSCAFG00020013877) #20	ENSCAFG00020013867 #22	SFXN4 (ENSCAFG00020013859) #21	DENND10 (ENSCAFG00020013848) #23	EIF3A (ENSCAFG00020013841) #24	CACUL1 (ENSCAFG00020013839) #26	PRLHR (ENSCAFG00020013838) #27	FAM204A (ENSCAFG00020013835) #28	RAB11FIP2 (ENSCAFG00020013823) #29	ENSCAFG00020013812	EMX2 (ENSCAFG00020013802) #31	PDZD8 (ENSCAFG00020013794) #32	SLC18A2 (ENSCAFG00020013770) #33	KCNK18 (ENSCAFG00020013767) #34	VAX1 (ENSCAFG00020013764) #35	SHTN1 (ENSCAFG00020013700) #37	ENO4 (ENSCAFG00020013696)
Dog	MODERN SPECIES	20	NSMCE4A (ENSCAFG00845020544)	ATE1OS (ENSCAFG00845020507)	ATE1 (ENSCAFG00845020272)	FGFR2 (ENSCAFG00845019372)	WDR11 (ENSCAFG00845018912)	PLPP4 (ENSCAFG00845018703) #9	ENSCAFG00845018618	ENSCAFG00845018569	SEC23IP (ENSCAFG00845018243) #10	MCMBP (ENSCAFG00845017945) #11	SEC23IP (ENSCAFG00845017286) #12	BAG3 (ENSCAFG00845016933) #13	TIAL1 (ENSCAFG00845016533) #16	RGS10 (ENSCAFG00845016371) #19	GRK5 (ENSCAFG00845016167) #20	PRDX3 (ENSCAFG00845016072) #22	SFXN4 (ENSCAFG00845015969) #21	DENND10 (ENSCAFG00845015834) #23	EIF3A (ENSCAFG00845015674) #24	NANOS1 (ENSCAFG00845015640)	CACUL1 (ENSCAFG00845015577) #26	PRLHR (ENSCAFG00845031063) #27	FAM204A (ENSCAFG00845031061) #28	RAB11FIP2 (ENSCAFG00845031060) #29	EMX2 (ENSCAFG00845031057) #31	PDZD8 (ENSCAFG00845031054) #32	SLC18A2 (ENSCAFG00845031051) #33	KCNK18 (ENSCAFG00845031048) #34	VAX1 (ENSCAFG00845031045) #35	SHTN1 (ENSCAFG00845031041) #37	ENO4 (ENSCAFG00845031032)
Red fox	MODERN SPECIES	100	ENSVVUG00000010430	C10orf67 (ENSVVUG00000010441)	MSRB2 (ENSVVUG00000010468)	ARMC3 (ENSVVUG00000010474)	PIP4K2A (ENSVVUG00000010501)	SPAG6 (ENSVVUG00000010513)	BMI1 (ENSVVUG00000010556)	COMMD3 (ENSVVUG00000010568)	DNAJC1 (ENSVVUG00000010576)	MLLT10 (ENSVVUG00000010599)	SKIDA1 (ENSVVUG00000010691)	ENSVVUG00000010711	ENSVVUG00000010727	ENSVVUG00000010761	ENSVVUG00000010764	ENSVVUG00000010777 #22	PLXDC2 (ENSVVUG00000010808)	ENSVVUG00000010919
Caniformia_b	ANCESTRAL SPECIES	10	ENSGT00940000161718	ENSGT00940000157052	ENSGT00390000011476	ENSGT00390000016534.B	ENSGT00500000044926	ENSGT00940000155447	ENSGT00390000004068	ENSGT00940000158288 #9	ENSGT00940000156602 #10	ENSGT00390000017265 #11	ENSGT00940000155996 #12	ENSGT00940000159204 #13	ENSGT00940000160482 #16	ENSGT00940000161426 #19	ENSGT00940000160702.b #20	ENSGT00940000153430.a.b #22	ENSGT01030000234641.a.b #21	ENSGT00390000014431 #23	ENSGT00730000111063 #24	ENSGT00950000183135.B.b	ENSGT00390000000403 #26	ENSGT00940000162008 #27	ENSGT00390000008978 #28	ENSGT00940000158482 #29	ENSGT00940000157425.B #31	ENSGT00390000017746 #32	ENSGT00940000157593 #33	ENSGT00700000104522 #34	ENSGT00940000161152 #35	ENSGT00510000048167.a #37	ENSGT00950000182805.a.b
Mustelinae	ANCESTRAL SPECIES	40	ENSGT00940000155157	ENSGT00940000161718	ENSGT00940000157052	ENSGT00390000011476	ENSGT00500000044926	ENSGT00940000155447	ENSGT00390000004068	ENSGT00940000158288 #9	ENSGT00940000156602 #10	ENSGT00390000017265 #11	ENSGT00940000155996 #12	ENSGT00940000159204 #13	ENSGT00940000160482 #16	ENSGT00940000161426 #19	ENSGT00940000160702.b #20	ENSGT00940000153430.a.b #22	ENSGT01030000234641.a.b #21	ENSGT00390000014431 #23	ENSGT00730000111063 #24	ENSGT00390000000403 #26	ENSGT00940000162008 #27	ENSGT00390000008978 #28	ENSGT00940000158482 #29	ENSGT00940000157425.B #31	ENSGT00390000017746 #32	ENSGT00940000157593 #33	ENSGT00700000104522 #34	ENSGT00940000161152 #35	ENSGT00510000048167.a #37	ENSGT00950000182805.a.b	ENSGT00940000154551
American mink	DUPLICATION
American mink	MODERN SPECIES	35	BTBD16 (ENSNVIG00000007104)	TACC2 (ENSNVIG00000006963)	NSMCE4A (ENSNVIG00000006954)	ATE1 (ENSNVIG00000006880)	FGFR2 (ENSNVIG00000006193)	WDR11 (ENSNVIG00000006011)	ENSNVIG00000005981	PLPP4 (ENSNVIG00000005960) #9	SEC23IP (ENSNVIG00000005465) #10	MCMBP (ENSNVIG00000005366) #11	INPP5F (ENSNVIG00000005245) #12	BAG3 (ENSNVIG00000005182) #13	TIAL1 (ENSNVIG00000005133) #16	RGS10 (ENSNVIG00000005120) #19	GRK5 (ENSNVIG00000005095) #20	ENSNVIG00000005067 #22	SFXN4 (ENSNVIG00000005056) #21	DENND10 (ENSNVIG00000005028) #23	EIF3A (ENSNVIG00000004975) #24	CACUL1 (ENSNVIG00000004912) #26	PRLHR (ENSNVIG00000004906) #27	F204A (ENSNVIG00000004886) #28	RFIP2 (ENSNVIG00000004877) #29	EMX2 (ENSNVIG00000004854) #31	PDZD8 (ENSNVIG00000004839) #32	SLC18A2 (ENSNVIG00000004792) #33	KCNK18 (ENSNVIG00000004771) #34	VAX1 (ENSNVIG00000004765) #35	SHTN1 (ENSNVIG00000004699) #37	ENO4 (ENSNVIG00000004662)	HSPA12A (ENSNVIG00000004621)
American mink	MODERN SPECIES	62								ENSNVIG00000016739	ENSNVIG00000016725	ENSNVIG00000016707	ENSNVIG00000016695	RECK (ENSNVIG00000016655)	GLIPR2 (ENSNVIG00000016605)	CCIN (ENSNVIG00000016601)	CLTA (ENSNVIG00000016519)	ENSNVIG00000016511 #22	GNE (ENSNVIG00000016422)	RNF38 (ENSNVIG00000016353)	MELK (ENSNVIG00000016306)	ENSNVIG00000016301	PAX5 (ENSNVIG00000016049)	ZCCHC7 (ENSNVIG00000016001)	GRHPR (ENSNVIG00000015986)	ZBTB5 (ENSNVIG00000015984)	RPA49 (ENSNVIG00000015941)	FBX10 (ENSNVIG00000015899)	FRMPD1 (ENSNVIG00000015854)	TRMT10B (ENSNVIG00000015833)	EXOSC3 (ENSNVIG00000015819)	DCAF10 (ENSNVIG00000015802)	ENSNVIG00000015798
Ferret	MODERN SPECIES	193	NSMCE4A (ENSMPUG00000002960)	ATE1 (ENSMPUG00000002968)	ENSMPUG00000002979	ENSMPUG00000002985	FGFR2 (ENSMPUG00000002989)	ENSMPUG00000002994	WDR11 (ENSMPUG00000002997)	PLPP4 (ENSMPUG00000003005) #9	SEC23IP (ENSMPUG00000003023) #10	MCMBP (ENSMPUG00000003036) #11	INPP5F (ENSMPUG00000003046) #12	BAG3 (ENSMPUG00000003057) #13	TIAL1 (ENSMPUG00000003060) #16	RGS10 (ENSMPUG00000003064) #19	GRK5 (ENSMPUG00000003068) #20	PRDX3 (ENSMPUG00000003074) #22	SFXN4 (ENSMPUG00000003077) #21	DENND10 (ENSMPUG00000003085) #23	EIF3A (ENSMPUG00000003093) #24	CACUL1 (ENSMPUG00000003204) #26	PRLHR (ENSMPUG00000019261) #27	ENSMPUG00000003239 #28	RAB11FIP2 (ENSMPUG00000003288) #29	ENSMPUG00000003294	EMX2 (ENSMPUG00000003297) #31	PDZD8 (ENSMPUG00000003305) #32	SLC18A2 (ENSMPUG00000003349) #33	ENSMPUG00000003363	VAX1 (ENSMPUG00000003374) #35	SHTN1 (ENSMPUG00000003407) #37	ENO4 (ENSMPUG00000003414)
Ursidae	ANCESTRAL SPECIES	5	ENSGT00940000157052	ENSGT00390000011476	ENSGT00390000016534.B	ENSGT00500000044926	ENSGT00940000155447	ENSGT00390000004068	ENSGT00940000158288 #9	ENSGT00940000156602 #10	ENSGT00940000166528.a.a	ENSGT00390000017265 #11	ENSGT00940000155996 #12	ENSGT00940000159204 #13	ENSGT00940000160482 #16	ENSGT00940000161426 #19	ENSGT00940000160702.b #20	ENSGT00940000153430.a.b #22	ENSGT01030000234641.a.b #21	ENSGT00390000014431 #23	ENSGT00730000111063 #24	ENSGT00950000183135.B.b	ENSGT00390000000403 #26	ENSGT00940000162008 #27	ENSGT00390000008978 #28	ENSGT00940000158482 #29	ENSGT00940000157425.B #31	ENSGT00390000017746 #32	ENSGT00940000157593 #33	ENSGT00700000104522 #34	ENSGT00510000048167.a #37	ENSGT00950000182805.a.b	ENSGT00940000154551
Ursus	ANCESTRAL SPECIES	7	ENSGT00940000157052	ENSGT00390000011476	ENSGT00390000016534.B	ENSGT00500000044926	ENSGT00940000155447	ENSGT00390000004068	ENSGT00940000158288 #9	ENSGT00940000156602 #10	ENSGT00940000166528.a.a	ENSGT00390000017265 #11	ENSGT00940000155996 #12	ENSGT00940000159204 #13	ENSGT00940000160482 #16	ENSGT00940000161426 #19	ENSGT00940000160702.b #20	ENSGT00940000153430.a.b #22	ENSGT01030000234641.a.b #21	ENSGT00390000014431 #23	ENSGT00730000111063 #24	ENSGT00390000000403 #26	ENSGT00940000162008 #27	ENSGT00390000008978 #28	ENSGT00940000158482 #29	ENSGT00940000157425.B #31	ENSGT00390000017746 #32	ENSGT00940000157593 #33	ENSGT00700000104522 #34	ENSGT00940000165789	ENSGT00510000048167.a #37	ENSGT00950000182805.a.b	ENSGT00940000154551
Polar bear	MODERN SPECIES	92	ENSUMAG00000004468	ATE1 (ENSUMAG00000004457)	ENSUMAG00000004366	ENSUMAG00000004111	WDR11 (ENSUMAG00000004075)	ENSUMAG00000004063	PLPP4 (ENSUMAG00000004036) #9	SEC23IP (ENSUMAG00000003896) #10	ENSUMAG00000003871	MCMBP (ENSUMAG00000003425) #11	INPP5F (ENSUMAG00000003243) #12	BAG3 (ENSUMAG00000003213) #13	TIAL1 (ENSUMAG00000003207) #16	RGS10 (ENSUMAG00000003205) #19	GRK5 (ENSUMAG00000003203) #20	PRDX3 (ENSUMAG00000003198) #22	SFXN4 (ENSUMAG00000003195) #21	DENND10 (ENSUMAG00000003193) #23	EIF3A (ENSUMAG00000003180) #24	CACUL1 (ENSUMAG00000003168) #26	PRLHR (ENSUMAG00000003164) #27	FAM204A (ENSUMAG00000003156) #28	RAB11FIP2 (ENSUMAG00000003131) #29	PDZD8 (ENSUMAG00000003098) #32	SLC18A2 (ENSUMAG00000003070) #33	ENSUMAG00000003060	SHTN1 (ENSUMAG00000002862) #37	ENO4 (ENSUMAG00000002829)	HSPA12A (ENSUMAG00000002794)	C10orf82 (ENSUMAG00000002785)	PNLIPRP2 (ENSUMAG00000002728)
American black bear	MODERN SPECIES	402															GRK5 (ENSUAMG00000009453) #20	PRDX3 (ENSUAMG00000009454) #22	ENSUAMG00000009455 #21	DENND10 (ENSUAMG00000009459) #23	EIF3A (ENSUAMG00000009473) #24
Giant Panda	MODERN SPECIES	16	TACC2 (ENSAMEG00000010858)	NSMCE4A (ENSAMEG00000010897)	ENSAMEG00000010913	ATE1 (ENSAMEG00000010918)	FGFR2 (ENSAMEG00000010959)	WDR11 (ENSAMEG00000010302)	PLPP4 (ENSAMEG00000010299) #9	SEC23IP (ENSAMEG00000010251) #10	ENSAMEG00000001122	MCMBP (ENSAMEG00000010208) #11	INPP5F (ENSAMEG00000010186) #12	BAG3 (ENSAMEG00000010175) #13	TIAL1 (ENSAMEG00000010147) #16	RGS10 (ENSAMEG00000010141) #19	GRK5 (ENSAMEG00000010049) #20	PRDX3 (ENSAMEG00000010025) #22	ENSAMEG00000010019 #21	DENND10 (ENSAMEG00000009999) #23	EIF3A (ENSAMEG00000009961) #24	ENSAMEG00000025767	CACUL1 (ENSAMEG00000009950) #26	PRLHR (ENSAMEG00000020159) #27	FAM204A (ENSAMEG00000024923) #28	RAB11FIP2 (ENSAMEG00000009921) #29	EMX2 (ENSAMEG00000025286) #31	ENSAMEG00000014138 #32	SLC18A2 (ENSAMEG00000014094) #33	KCNK18 (ENSAMEG00000014089) #34	SHTN1 (ENSAMEG00000014060) #37	ENO4 (ENSAMEG00000014046)	HSPA12A (ENSAMEG00000014024)
Felidae	ANCESTRAL SPECIES	14	ENSGT00940000155157	ENSGT00940000161718	ENSGT00940000157052	ENSGT00390000011476	ENSGT00500000044926	ENSGT00940000155447	ENSGT00390000004068	ENSGT00940000158288 #9	ENSGT00940000156602 #10	ENSGT00390000017265 #11	ENSGT00940000155996 #12	ENSGT00940000159204 #13	ENSGT00940000160482 #16	ENSGT00940000161426 #19	ENSGT00940000160702.b #20	ENSGT00940000153430.a.b #22	ENSGT01030000234641.a.b #21	ENSGT00390000014431 #23	ENSGT00730000111063 #24	ENSGT00950000183135.B.b	ENSGT00390000000403 #26	ENSGT00940000162008 #27	ENSGT00390000008978 #28	ENSGT00390000010476	ENSGT00940000158482 #29	ENSGT00940000157425.B #31	ENSGT00390000017746 #32	ENSGT00940000157593 #33	ENSGT00700000104522 #34	ENSGT00940000161152 #35	ENSGT00510000048167.a #37
Panthera	ANCESTRAL SPECIES	8	ENSGT00940000155157	ENSGT00940000161718	ENSGT00940000157052	ENSGT00390000011476	ENSGT00500000044926	ENSGT00940000155447	ENSGT00390000004068	ENSGT00940000158288 #9	ENSGT00940000156602 #10	ENSGT00390000017265 #11	ENSGT00940000155996 #12	ENSGT00940000159204 #13	ENSGT00940000160482 #16	ENSGT00940000161426 #19	ENSGT00940000160702.b #20	ENSGT00940000153430.a.b #22	ENSGT01030000234641.a.b #21	ENSGT00390000014431 #23	ENSGT00730000111063 #24	ENSGT00950000183135.B.b	ENSGT00390000000403 #26	ENSGT00940000162008 #27	ENSGT00390000008978 #28	ENSGT00390000010476	ENSGT00940000158482 #29	ENSGT00940000157425.B #31	ENSGT00390000017746 #32	ENSGT00940000157593 #33	ENSGT00700000104522 #34	ENSGT00940000161152 #35	ENSGT00510000048167.a #37
Panthera_a	ANCESTRAL SPECIES	9	ENSGT00940000155157	ENSGT00940000161718	ENSGT00940000157052	ENSGT00390000011476	ENSGT00500000044926	ENSGT00940000155447	ENSGT00390000004068	ENSGT00940000158288 #9	ENSGT00940000156602 #10	ENSGT00390000017265 #11	ENSGT00940000155996 #12	ENSGT00940000159204 #13	ENSGT00940000160482 #16	ENSGT00940000161426 #19	ENSGT00940000160702.b #20	ENSGT00940000153430.a.b #22	ENSGT01030000234641.a.b #21	ENSGT00390000014431 #23	ENSGT00730000111063 #24	ENSGT00950000183135.B.b	ENSGT00390000000403 #26	ENSGT00940000162008 #27	ENSGT00390000008978 #28	ENSGT00390000010476	ENSGT00940000158482 #29	ENSGT00940000157425.B #31	ENSGT00390000017746 #32	ENSGT00940000157593 #33	ENSGT00700000104522 #34	ENSGT00940000161152 #35	ENSGT00510000048167.a #37
leopard	MODERN SPECIES	33	BTBD16 (ENSPPRG00000003961)	ENSPPRG00000007110	NSMCE4A (ENSPPRG00000007618)	ATE1 (ENSPPRG00000009731)	ENSPPRG00000011499	ENSPPRG00000017103	WDR11 (ENSPPRG00000021913)	PLPP4 (ENSPPRG00000023280) #9	SEC23IP (ENSPPRG00000022653) #10	MCMBP (ENSPPRG00000001647) #11	INPP5F (ENSPPRG00000002675) #12	BAG3 (ENSPPRG00000002763) #13	TIAL1 (ENSPPRG00000003226) #16	RGS10 (ENSPPRG00000003836) #19	GRK5 (ENSPPRG00000005052) #20	PRDX3 (ENSPPRG00000005382) #22	SFXN4 (ENSPPRG00000005852) #21	DENND10 (ENSPPRG00000007455) #23	EIF3A (ENSPPRG00000008918) #24	NANOS1 (ENSPPRG00000021230)	CACUL1 (ENSPPRG00000009658) #26	PRLHR (ENSPPRG00000021289) #27	FAM204A (ENSPPRG00000010037) #28	ENSPPRG00000010227	RAB11FIP2 (ENSPPRG00000010519) #29	EMX2 (ENSPPRG00000010930) #31	PDZD8 (ENSPPRG00000011062) #32	SLC18A2 (ENSPPRG00000011245) #33	KCNK18 (ENSPPRG00000012025) #34	VAX1 (ENSPPRG00000012370) #35	SHTN1 (ENSPPRG00000014439) #37
lion	MODERN SPECIES	11	BTBD16 (ENSPLOG00000018372)	ENSPLOG00000018655	ENSPLOG00000019457	NSMCE4A (ENSPLOG00000019528)	ATE1 (ENSPLOG00000019598)	FGFR2 (ENSPLOG00000020164)	WDR11 (ENSPLOG00000021477)	PLPP4 (ENSPLOG00000021510) #9	SEC23IP (ENSPLOG00000021541) #10	MCMBP (ENSPLOG00000021644) #11	INPP5F (ENSPLOG00000021703) #12	BAG3 (ENSPLOG00000021815) #13	TIAL1 (ENSPLOG00000021852) #16	RGS10 (ENSPLOG00000021912) #19	GRK5 (ENSPLOG00000021943) #20	PRDX3 (ENSPLOG00000021953) #22	SFXN4 (ENSPLOG00000021975) #21	DENND10 (ENSPLOG00000022001) #23	EIF3A (ENSPLOG00000022036) #24	NANOS1 (ENSPLOG00000022092)	CACUL1 (ENSPLOG00000022099) #26	PRLHR (ENSPLOG00000022114) #27	FAM204A (ENSPLOG00000022124) #28	RAB11FIP2 (ENSPLOG00000022142) #29	ENSPLOG00000022165	EMX2 (ENSPLOG00000022174) #31	PDZD8 (ENSPLOG00000022186) #32	SLC18A2 (ENSPLOG00000022197) #33	KCNK18 (ENSPLOG00000022215) #34	VAX1 (ENSPLOG00000022240) #35	SHTN1 (ENSPLOG00000022277) #37
Tiger	MODERN SPECIES	210	BTBD16 (ENSPTIG00000014571)	ENSPTIG00000022110	NSMCE4A (ENSPTIG00000022082)	ATE1 (ENSPTIG00000021995)	ENSPTIG00000021238	ENSPTIG00000007977	WDR11 (ENSPTIG00000001166)	PLPP4 (ENSPTIG00000018990) #9	SEC23IP (ENSPTIG00000017676) #10	MCMBP (ENSPTIG00000014781) #11	INPP5F (ENSPTIG00000011407) #12	BAG3 (ENSPTIG00000009763) #13	TIAL1 (ENSPTIG00000007899) #16	RGS10 (ENSPTIG00000006086) #19	GRK5 (ENSPTIG00000021829) #20	PRDX3 (ENSPTIG00000021567) #22	SFXN4 (ENSPTIG00000020304) #21	DENND10 (ENSPTIG00000018111) #23	EIF3A (ENSPTIG00000013403) #24	CACUL1 (ENSPTIG00000012422) #26	PRLHR (ENSPTIG00000000631) #27	FAM204A (ENSPTIG00000010425) #28	ENSPTIG00000010114	RAB11FIP2 (ENSPTIG00000008394) #29	ENSPTIG00000007739 #31	PDZD8 (ENSPTIG00000006938) #32	SLC18A2 (ENSPTIG00000000431) #33	KCNK18 (ENSPTIG00000019400) #34	SHTN1 (ENSPTIG00000013937) #37	ENSPTIG00000012119	HSPA12A (ENSPTIG00000008579)
Cat	MODERN SPECIES	242	PLEKHA1 (ENSFCAG00000023664)	BTBD16 (ENSFCAG00000003652)	NSMCE4A (ENSFCAG00000003647)	TACC2 (ENSFCAG00000026479)	ATE1 (ENSFCAG00000027935)	FGFR2 (ENSFCAG00000003692)	WDR11 (ENSFCAG00000014314)	PLPP4 (ENSFCAG00000042026) #9	SEC23IP (ENSFCAG00000014908) #10	MCMBP (ENSFCAG00000014907) #11	INPP5F (ENSFCAG00000024040) #12	BAG3 (ENSFCAG00000023182) #13	TIAL1 (ENSFCAG00000031690) #16	RGS10 (ENSFCAG00000026725) #19	GRK5 (ENSFCAG00000010660) #20	PRDX3 (ENSFCAG00000010659) #22	SFXN4 (ENSFCAG00000010658) #21	DENND10 (ENSFCAG00000010657) #23	EIF3A (ENSFCAG00000010656) #24	ENSFCAG00000051869	CACUL1 (ENSFCAG00000044111) #26	PRLHR (ENSFCAG00000043088) #27	FAM204A (ENSFCAG00000013021) #28	RAB11FIP2 (ENSFCAG00000022481) #29	ENSFCAG00000050192	EMX2 (ENSFCAG00000042351) #31	PDZD8 (ENSFCAG00000018713) #32	SLC18A2 (ENSFCAG00000012991) #33	KCNK18 (ENSFCAG00000035502) #34	VAX1 (ENSFCAG00000036220) #35	SHTN1 (ENSFCAG00000023428) #37
Eulipotyphla	ANCESTRAL SPECIES	2233																ENSGT00940000153430.a.b #22	ENSGT01030000234641.a.b #21
Common shrew	MODERN SPECIES	4659																ENSSARG00000005771 #22
Hedgehog	MODERN SPECIES	7538																PRDX3 (ENSEEUG00000009299) #22	ENSEEUG00000009123 #21
Atlantogenata	ANCESTRAL SPECIES	10															ENSGT00940000160702.b #20	ENSGT00940000153430.a.b #22	ENSGT01030000234641.a.b #21	ENSGT00390000014431 #23	ENSGT00730000111063 #24	ENSGT00950000183135.B.b	ENSGT00390000000403 #26	ENSGT00390000008978 #28	ENSGT00940000158482 #29	ENSGT00940000157425.B #31	ENSGT00390000017746 #32	ENSGT00940000157593 #33	ENSGT00700000104522 #34	ENSGT00940000161152 #35	ENSGT00510000048167.a #37	ENSGT00950000182805.a.b	ENSGT00940000154551
Xenarthra	ANCESTRAL SPECIES																	ENSGT00940000153430.a.b #22
Armadillo	MODERN SPECIES	4401																ENSDNOG00000044485 #22	ENSDNOG00000044221	ENSDNOG00000039505	ENSDNOG00000043866	SPOCK3 (ENSDNOG00000002623)	TLL1 (ENSDNOG00000040283)	ENSDNOG00000048025	CPE (ENSDNOG00000009634)	MSMO1 (ENSDNOG00000009622)	KLHL2 (ENSDNOG00000009598)	TMEM192 (ENSDNOG00000038375)	ENSDNOG00000032640	ENSDNOG00000046782	ENSDNOG00000033261	ENSDNOG00000045737	ENSDNOG00000042283
Afrotheria	ANCESTRAL SPECIES	4															ENSGT00940000160702.b #20	ENSGT00940000153430.a.b #22	ENSGT01030000234641.a.b #21	ENSGT00390000014431 #23	ENSGT00730000111063 #24	ENSGT00950000183135.B.b	ENSGT00390000000403 #26	ENSGT00390000008978 #28	ENSGT00940000158482 #29	ENSGT00940000157425.B #31	ENSGT00390000017746 #32	ENSGT00940000157593 #33	ENSGT00940000161152 #35	ENSGT00510000048167.a #37	ENSGT00950000182805.a.b	ENSGT00940000154551	ENSGT00390000017460
Afrotheria_a	ANCESTRAL SPECIES	4																ENSGT00940000153430.a.b #22	ENSGT01030000234641.a.b #21	ENSGT00390000014431 #23	ENSGT00730000111063 #24	ENSGT00950000183135.B.b	ENSGT00390000000403 #26	ENSGT00390000008978 #28	ENSGT00940000158482 #29	ENSGT00940000157425.B #31	ENSGT00390000017746 #32	ENSGT00940000157593 #33	ENSGT00940000161152 #35	ENSGT00510000048167.a #37	ENSGT00950000182805.a.b	ENSGT00940000154551	ENSGT00390000017460
Elephant	MODERN SPECIES	3																PRDX3 (ENSLAFG00000030975) #22	DENND10 (ENSLAFG00000012957) #23	EIF3A (ENSLAFG00000012948) #24	CACUL1 (ENSLAFG00000008702) #26	FAM204A (ENSLAFG00000016774) #28	RAB11FIP2 (ENSLAFG00000002770) #29	EMX2 (ENSLAFG00000016071) #31	PDZD8 (ENSLAFG00000009181) #32	SLC18A2 (ENSLAFG00000015794) #33	VAX1 (ENSLAFG00000018107) #35	SHTN1 (ENSLAFG00000012502) #37	ENO4 (ENSLAFG00000012497)	HSPA12A (ENSLAFG00000014420)	C10orf82 (ENSLAFG00000014418)	PNLIPRP2 (ENSLAFG00000014416)	PNLIP (ENSLAFG00000014403)
Hyrax	MODERN SPECIES	1605																PRDX3 (ENSPCAG00000010971) #22	ENSPCAG00000010865 #21	DENND10 (ENSPCAG00000010791) #23
Tenrec	MODERN SPECIES	1990															ENSETEG00000010932 #20	PRDX3 (ENSETEG00000010929) #22
Marsupialia	ANCESTRAL SPECIES		ENSGT00940000157052	ENSGT00390000011476	ENSGT00940000165188	ENSGT00500000044926	ENSGT00940000155447	ENSGT00390000004068	ENSGT00940000157351.j	ENSGT00940000158288 #9	ENSGT00940000156602 #10	ENSGT00390000017265 #11	ENSGT00940000155996 #12	ENSGT00940000159204 #13	ENSGT00940000160482 #16	ENSGT00940000161426 #19	ENSGT00940000160702.b #20	ENSGT00940000153430.a.b #22	ENSGT01030000234641.a.b #21	ENSGT00940000168868	ENSGT00940000164222	ENSGT00730000111063 #24	ENSGT00950000183135.B.b	ENSGT00390000000403 #26	ENSGT00940000164128.a	ENSGT00390000008978 #28	ENSGT00940000158482 #29	ENSGT00940000157425.B #31	ENSGT00390000017746 #32	ENSGT00940000157593 #33	ENSGT00700000104522 #34	ENSGT00940000161152 #35	ENSGT00510000048167.a #37
Opossum	DUPLICATION
Opossum	DUPLICATION
Opossum	MODERN SPECIES	2	ENSMODG00000023874	ENSMODG00000040944	ENSMODG00000040730	P2RX2 (ENSMODG00000015154)	POLE (ENSMODG00000015171)	PXMP2 (ENSMODG00000015176)	PGAM5 (ENSMODG00000015179)	ANKLE2 (ENSMODG00000015199)	ENSMODG00000048294	ENSMODG00000023870	ENSMODG00000023648	ENSMODG00000043816	ENSMODG00000046866	ENSMODG00000027552	ENSMODG00000049721	ENSMODG00000049288 #22	ENSMODG00000039078	ENSMODG00000023859	ENSMODG00000023861	ENSMODG00000043705 #22	ENSMODG00000037321	GOLGA3 (ENSMODG00000015263)	CHFR (ENSMODG00000015272)	FBRSL1 (ENSMODG00000015281)	GALNT9 (ENSMODG00000015333)	ENSMODG00000046361	NOC4L (ENSMODG00000015342)	DDX51 (ENSMODG00000015355)	ENSMODG00000047289	EP400 (ENSMODG00000015487)	PUS1 (ENSMODG00000015551)
Opossum	MODERN SPECIES	2	POLE (ENSMODG00000015171)	PXMP2 (ENSMODG00000015176)	PGAM5 (ENSMODG00000015179)	ANKLE2 (ENSMODG00000015199)	ENSMODG00000048294	ENSMODG00000023870	ENSMODG00000023648	ENSMODG00000043816	ENSMODG00000046866	ENSMODG00000027552	ENSMODG00000049721	ENSMODG00000049288 #22	ENSMODG00000039078	ENSMODG00000023859	ENSMODG00000023861	ENSMODG00000043705 #22	ENSMODG00000037321	GOLGA3 (ENSMODG00000015263)	CHFR (ENSMODG00000015272)	FBRSL1 (ENSMODG00000015281)	GALNT9 (ENSMODG00000015333)	ENSMODG00000046361	NOC4L (ENSMODG00000015342)	DDX51 (ENSMODG00000015355)	ENSMODG00000047289	EP400 (ENSMODG00000015487)	PUS1 (ENSMODG00000015551)	ULK1 (ENSMODG00000015566)	MMP17 (ENSMODG00000015576)	SFSWAP (ENSMODG00000015581)	ENSMODG00000039509
Opossum	MODERN SPECIES		ENSMODG00000008447	FGFR2 (ENSMODG00000008525)	WDR11 (ENSMODG00000008627)	ENSMODG00000039409	ENSMODG00000008634	PLPP4 (ENSMODG00000008644) #9	ENSMODG00000038446	SEC23IP (ENSMODG00000008685) #10	MCMBP (ENSMODG00000008714) #11	INPP5F (ENSMODG00000008751) #12	BAG3 (ENSMODG00000008764) #13	ENSMODG00000008865	RGS10 (ENSMODG00000047360) #19	ENSMODG00000024855	GRK5 (ENSMODG00000009266) #20	ENSMODG00000009286 #22	ENSMODG00000009292	EIF3A (ENSMODG00000009316) #24	NANOS1 (ENSMODG00000009319)	ENSMODG00000009342	CACUL1 (ENSMODG00000009365) #26	ENSMODG00000009370	ENSMODG00000009378 #28	RAB11FIP2 (ENSMODG00000009385) #29	EMX2 (ENSMODG00000009388) #31	PDZD8 (ENSMODG00000009394) #32	SLC18A2 (ENSMODG00000009424) #33	VAX1 (ENSMODG00000009428) #35	SHTN1 (ENSMODG00000009476) #37	ENSMODG00000009479	ENO4 (ENSMODG00000009486)
Marsupialia_b	ANCESTRAL SPECIES		ENSGT00940000157052	ENSGT00390000011476	ENSGT00390000016534.B	ENSGT00500000044926	ENSGT00940000155447	ENSGT00390000004068	ENSGT00940000157351.j	ENSGT00940000158288 #9	ENSGT00940000156602 #10	ENSGT00390000017265 #11	ENSGT00940000155996 #12	ENSGT00940000159204 #13	ENSGT00940000160482 #16	ENSGT00940000161426 #19	ENSGT00940000160702.b #20	ENSGT00940000153430.a.b #22	ENSGT01030000234641.a.b #21	ENSGT00940000168868	ENSGT00940000164222	ENSGT00730000111063 #24	ENSGT00950000183135.B.b	ENSGT00390000000403 #26	ENSGT00940000164128.a	ENSGT00390000008978 #28	ENSGT00940000158482 #29	ENSGT00940000157425.B #31	ENSGT00390000017746 #32	ENSGT00940000157593 #33	ENSGT00700000104522 #34	ENSGT00940000161152 #35	ENSGT00510000048167.a #37
Diprotodontia	ANCESTRAL SPECIES	6	ENSGT00940000157052	ENSGT00390000011476	ENSGT00390000016534.B	ENSGT00500000044926	ENSGT00940000155447	ENSGT00390000004068	ENSGT00940000157351.j	ENSGT00940000158288 #9	ENSGT00940000156602 #10	ENSGT00390000017265 #11	ENSGT00940000155996 #12	ENSGT00940000159204 #13	ENSGT00940000160482 #16	ENSGT00940000161426 #19	ENSGT00940000160702.b #20	ENSGT00940000153430.a.b #22	ENSGT01030000234641.a.b #21	ENSGT00940000168868	ENSGT00940000164222	ENSGT00730000111063 #24	ENSGT00950000183135.B.b	ENSGT00390000000403 #26	ENSGT00940000164128.a	ENSGT00390000008978 #28	ENSGT00940000158482 #29	ENSGT00940000157425.B #31	ENSGT00390000017746 #32	ENSGT00940000157593 #33	ENSGT00700000104522 #34	ENSGT00940000161152 #35	ENSGT00510000048167.a #37
Diprotodontia_a	ANCESTRAL SPECIES	7	ENSGT00940000157052	ENSGT00390000011476	ENSGT00390000016534.B	ENSGT00500000044926	ENSGT00940000155447	ENSGT00390000004068	ENSGT00940000157351.j	ENSGT00940000158288 #9	ENSGT00940000156602 #10	ENSGT00390000017265 #11	ENSGT00940000155996 #12	ENSGT00940000159204.e #13	ENSGT00940000160482 #16	ENSGT00940000161426 #19	ENSGT00940000160702.b #20	ENSGT00940000153430.a.b #22	ENSGT01030000234641.a.b #21	ENSGT00940000168868	ENSGT00940000164222	ENSGT00730000111063 #24	ENSGT00950000183135.B.b	ENSGT00390000000403 #26	ENSGT00940000164128.a	ENSGT00390000008978 #28	ENSGT00940000158482 #29	ENSGT00940000157425.B #31	ENSGT00390000017746 #32	ENSGT00940000157593 #33	ENSGT00700000104522 #34	ENSGT00940000161152 #35	ENSGT00510000048167.a #37
Common wonbat	MODERN SPECIES	581												TIAL1 (ENSVURG00010024923) #16	RGS10 (ENSVURG00010024927) #19	GRK5 (ENSVURG00010024930) #20	ENSVURG00010024931	PRDX3 (ENSVURG00010024932) #22	ENSVURG00010024935 #21	ENSVURG00010024938	EIF3A (ENSVURG00010024940) #24	NANOS1 (ENSVURG00010024946)	CACUL1 (ENSVURG00010024948) #26	ENSVURG00010024951	FAM204A (ENSVURG00010024953) #28	RAB11FIP2 (ENSVURG00010024955) #29	ENSVURG00010024958	ENSVURG00010024959	EMX2 (ENSVURG00010024960) #31	PDZD8 (ENSVURG00010024963) #32	SLC18A2 (ENSVURG00010024964) #33	VAX1 (ENSVURG00010024965) #35	SHTN1 (ENSVURG00010024967) #37
koala	MODERN SPECIES	30					FGFR2 (ENSPCIG00000004047)	WDR11 (ENSPCIG00000004026)	ENSPCIG00000019316	PLPP4 (ENSPCIG00000030825) #9	SEC23IP (ENSPCIG00000003012) #10	MCMBP (ENSPCIG00000003033) #11	INPP5F (ENSPCIG00000003062) #12	ENSPCIG00000003103 #13	TIAL1 (ENSPCIG00000003120) #16	RGS10 (ENSPCIG00000003153) #19	GRK5 (ENSPCIG00000003189) #20	PRDX3 (ENSPCIG00000028403) #22	ENSPCIG00000028409 #21	ENSPCIG00000035490	ENSPCIG00000028412	EIF3A (ENSPCIG00000028414) #24	ENSPCIG00000028425	CACUL1 (ENSPCIG00000028427) #26	ENSPCIG00000028430	FAM204A (ENSPCIG00000028435) #28	ENSPCIG00000019513	RAB11FIP2 (ENSPCIG00000036625) #29	EMX2 (ENSPCIG00000001396) #31	PDZD8 (ENSPCIG00000001428) #32	SLC18A2 (ENSPCIG00000001483) #33	ENSPCIG00000001543 #34	VAX1 (ENSPCIG00000034129) #35
Wallaby	MODERN SPECIES	7230																ENSMEUG00000007732 #22
Tasmanian devil	MODERN SPECIES	1	ENSSHAG00000009993	ENSSHAG00000012962	ENSSHAG00000013127	ATE1 (ENSSHAG00000028389)	FGFR2 (ENSSHAG00000006217)	WDR11 (ENSSHAG00000012828)	ENSSHAG00000013721	PLPP4 (ENSSHAG00000022918) #9	SEC23IP (ENSSHAG00000010548) #10	MCMBP (ENSSHAG00000010768) #11	INPP5F (ENSSHAG00000010978) #12	BAG3 (ENSSHAG00000012049) #13	TIAL1 (ENSSHAG00000012508) #16	RGS10 (ENSSHAG00000024740) #19	GRK5 (ENSSHAG00000013446) #20	PRDX3 (ENSSHAG00000014541) #22	ENSSHAG00000014575 #21	ENSSHAG00000014680	EIF3A (ENSSHAG00000001347) #24	NANOS1 (ENSSHAG00000029338)	CACUL1 (ENSSHAG00000007970) #26	ENSSHAG00000026913	ENSSHAG00000011601 #28	RAB11FIP2 (ENSSHAG00000013400) #29	EMX2 (ENSSHAG00000015725) #31	PDZD8 (ENSSHAG00000031609) #32	SLC18A2 (ENSSHAG00000016512) #33	ENSSHAG00000016715 #34	VAX1 (ENSSHAG00000022322) #35	ENSSHAG00000028544	SHTN1 (ENSSHAG00000017253) #37
Platypus	MODERN SPECIES	7	BUB3 (ENSOANG00000041516)	CPXM2 (ENSOANG00000038396)	ENSOANG00000030444	ENSOANG00000002087	ATE1 (ENSOANG00000047065)	FGFR2 (ENSOANG00000029096)	WDR11 (ENSOANG00000002737)	PLPP4 (ENSOANG00000036798) #9	SEC23IP (ENSOANG00000001533) #10	MCMBP (ENSOANG00000001532) #11	INPP5F (ENSOANG00000001530) #12	BAG3 (ENSOANG00000009317) #13	ENSOANG00000050160	RGS10 (ENSOANG00000012170) #19	GRK5 (ENSOANG00000004388) #20	PRDX3 (ENSOANG00000002979) #22	ENSOANG00000009547 #21	ENSOANG00000009548	EIF3A (ENSOANG00000007359) #24	CACUL1 (ENSOANG00000007361) #26	ENSOANG00000020103 #28	RAB11FIP2 (ENSOANG00000007362) #29	EMX2 (ENSOANG00000048943) #31	PDZD8 (ENSOANG00000014131) #32	SLC18A2 (ENSOANG00000014132) #33	ENSOANG00000050724	VAX1 (ENSOANG00000037648) #35	SHTN1 (ENSOANG00000014133) #37	ENSOANG00000014134	HSPA12A (ENSOANG00000014135)	ENSOANG00000014137
Sauria	ANCESTRAL SPECIES	8	ENSGT00940000157052	ENSGT00390000011476	ENSGT00500000044926	ENSGT00940000155447	ENSGT00390000004068	ENSGT00940000158288 #9	ENSGT00940000156602 #10	ENSGT00390000017265 #11	ENSGT00960000190376	ENSGT00940000155996 #12	ENSGT00940000159204 #13	ENSGT00940000154962.B	ENSGT00940000160482 #16	ENSGT00940000161426 #19	ENSGT00940000160702.b #20	ENSGT00940000153430.a.b #22	ENSGT01030000234641.a.b #21	ENSGT00940000164222	ENSGT00730000111063 #24	ENSGT00950000183135.B.b	ENSGT00390000000403 #26	ENSGT00940000162008 #27	ENSGT00940000164128.a	ENSGT00390000008978 #28	ENSGT00940000158482 #29	ENSGT00940000157425.B #31	ENSGT00390000017746 #32	ENSGT00940000157593 #33	ENSGT00700000104522 #34	ENSGT00940000161152 #35	ENSGT00510000048167.a #37
Archelosauria	ANCESTRAL SPECIES	10	ENSGT00940000157052	ENSGT00390000011476	ENSGT00500000044926	ENSGT00940000155447	ENSGT00390000004068	ENSGT00940000158288 #9	ENSGT00940000156602 #10	ENSGT00390000017265 #11	ENSGT00960000190376	ENSGT00940000155996 #12	ENSGT00940000159204 #13	ENSGT00940000154962.B	ENSGT00940000160482 #16	ENSGT00940000161426 #19	ENSGT00940000160702.b #20	ENSGT00940000153430.a.b #22	ENSGT01030000234641.a.b #21	ENSGT00940000164222	ENSGT00730000111063 #24	ENSGT00950000183135.B.b	ENSGT00390000000403 #26	ENSGT00940000162008 #27	ENSGT00940000164128.a	ENSGT00390000008978 #28	ENSGT00940000158482 #29	ENSGT00940000157425.B #31	ENSGT00390000017746 #32	ENSGT00940000157593 #33	ENSGT00700000104522 #34	ENSGT00940000161152 #35	ENSGT00510000048167.a #37
Archosauria	ANCESTRAL SPECIES	7	ENSGT00940000157052	ENSGT00390000011476	ENSGT00500000044926	ENSGT00940000155447	ENSGT00390000004068	ENSGT00940000158288 #9	ENSGT00940000156602 #10	ENSGT00390000017265 #11	ENSGT00960000190376	ENSGT00940000155996 #12	ENSGT00940000159204 #13	ENSGT00940000154962.B	ENSGT00940000160482 #16	ENSGT00940000161426 #19	ENSGT00940000160702.b #20	ENSGT00940000153430.a.b #22	ENSGT01030000234641.a.b #21	ENSGT00940000164222	ENSGT00730000111063 #24	ENSGT00950000183135.B.b	ENSGT00390000000403 #26	ENSGT00940000162008 #27	ENSGT00940000164128.a	ENSGT00390000008978 #28	ENSGT00940000158482 #29	ENSGT00940000157425.B #31	ENSGT00390000017746 #32	ENSGT00940000157593 #33	ENSGT00700000104522 #34	ENSGT00940000161152 #35	ENSGT00510000048167.a #37
Aves	ANCESTRAL SPECIES	6	ENSGT00940000157052	ENSGT00390000011476	ENSGT00500000044926	ENSGT00940000155447	ENSGT00390000004068	ENSGT00940000158288 #9	ENSGT00940000156602 #10	ENSGT00390000017265 #11	ENSGT00960000190376	ENSGT00940000155996 #12	ENSGT00940000159204 #13	ENSGT00940000154962.B	ENSGT00940000160482 #16	ENSGT00940000161426 #19	ENSGT00940000160702.b #20	ENSGT00940000153430.a.b #22	ENSGT01030000234641.a.b #21	ENSGT00940000164222	ENSGT00730000111063 #24	ENSGT00950000183135.B.b	ENSGT00390000000403 #26	ENSGT00940000164128.a	ENSGT00390000008978 #28	ENSGT00940000158482 #29	ENSGT00940000157425.B #31	ENSGT00390000017746 #32	ENSGT00940000157593 #33	ENSGT00700000104522 #34	ENSGT00940000161152 #35	ENSGT00510000048167.a #37	ENSGT00950000182805.a.b
Neognathae	ANCESTRAL SPECIES	7	ENSGT00940000157052	ENSGT00390000011476	ENSGT00500000044926	ENSGT00940000155447	ENSGT00390000004068	ENSGT00940000158288 #9	ENSGT00940000156602 #10	ENSGT00390000017265 #11	ENSGT00960000190376	ENSGT00940000155996 #12	ENSGT00940000159204 #13	ENSGT00940000154962.B	ENSGT00940000160482 #16	ENSGT00940000161426 #19	ENSGT00940000160702.b #20	ENSGT00940000153430.a.b #22	ENSGT01030000234641.a.b #21	ENSGT00940000164222	ENSGT00730000111063 #24	ENSGT00950000183135.B.b	ENSGT00390000000403 #26	ENSGT00940000164128.a	ENSGT00390000008978 #28	ENSGT00940000158482 #29	ENSGT00940000157425.B #31	ENSGT00390000017746 #32	ENSGT00940000157593 #33	ENSGT00700000104522 #34	ENSGT00940000161152 #35	ENSGT00510000048167.a #37	ENSGT00950000182805.a.b
Galloanserae	ANCESTRAL SPECIES	6	ENSGT00940000157052	ENSGT00390000011476	ENSGT00500000044926	ENSGT00940000155447	ENSGT00390000004068	ENSGT00940000158288 #9	ENSGT00940000156602 #10	ENSGT00390000017265 #11	ENSGT00960000190376	ENSGT00940000155996 #12	ENSGT00940000159204 #13	ENSGT00940000154962.B	ENSGT00940000160482 #16	ENSGT00940000161426 #19	ENSGT00940000160702.b #20	ENSGT00940000153430.a.b #22	ENSGT01030000234641.a.b #21	ENSGT00940000164222	ENSGT00730000111063 #24	ENSGT00950000183135.B.b	ENSGT00390000000403 #26	ENSGT00940000164128.a	ENSGT00390000008978 #28	ENSGT00940000158482 #29	ENSGT00940000157425.B #31	ENSGT00390000017746 #32	ENSGT00940000157593 #33	ENSGT00700000104522 #34	ENSGT00940000161152 #35	ENSGT00510000048167.a #37	ENSGT00950000182805.a.b
Anatidae	ANCESTRAL SPECIES	4	ENSGT00940000155157	ENSGT00940000157052	ENSGT00390000011476	ENSGT00500000044926	ENSGT00940000155447	ENSGT00390000004068	ENSGT00940000158288 #9	ENSGT00940000156602 #10	ENSGT00390000017265 #11	ENSGT00960000190376	ENSGT00940000155996 #12	ENSGT00940000159204 #13	ENSGT00940000160482 #16	ENSGT00940000161426 #19	ENSGT00940000160702.b #20	ENSGT00940000153430.a.b #22	ENSGT01030000234641.a.b #21	ENSGT00940000164222	ENSGT00730000111063 #24	ENSGT00950000183135.B.b	ENSGT00390000000403 #26	ENSGT00940000164128.a	ENSGT00390000008978 #28	ENSGT00940000158482 #29	ENSGT00940000157425.B #31	ENSGT00390000017746 #32	ENSGT00940000157593 #33	ENSGT00940000165789	ENSGT00940000161152 #35	ENSGT00510000048167.a #37	ENSGT00950000182805.a.b
Pink-footed goose	MODERN SPECIES	11	PLEKHA1 (ENSABRG00000000331)	TACC2 (ENSABRG00000000398)	NSMCE4A (ENSABRG00000000562)	ATE1 (ENSABRG00000000573)	FGFR2 (ENSABRG00000000608)	ENSABRG00000000638	WDR11 (ENSABRG00000000644)	PLPP4 (ENSABRG00000000668) #9	SEC23IP (ENSABRG00000000804) #10	MCMBP (ENSABRG00000000877) #11	INPP5F (ENSABRG00000000924) #12	BAG3 (ENSABRG00000000967) #13	TIAL1 (ENSABRG00000000984) #16	RGS10 (ENSABRG00000001042) #19	GRK5 (ENSABRG00000001057) #20	PRDX3 (ENSABRG00000001149) #22	SFXN4 (ENSABRG00000001170) #21	ENSABRG00000001251	EIF3A (ENSABRG00000001287) #24	NANOS1 (ENSABRG00000001345)	CACUL1 (ENSABRG00000001401) #26	ENSABRG00000001426	FAM204A (ENSABRG00000001447) #28	RAB11FIP2 (ENSABRG00000001462) #29	EMX2 (ENSABRG00000001504) #31	PDZD8 (ENSABRG00000001523) #32	SLC18A2 (ENSABRG00000001541) #33	ENSABRG00000001573	VAX1 (ENSABRG00000001585) #35	SHTN1 (ENSABRG00000001621) #37	ENO4 (ENSABRG00000001670)
Duck	MODERN SPECIES	24	ATE1 (ENSAPLG00000012854)	FGFR2 (ENSAPLG00000011952)	WDR11 (ENSAPLG00000011124)	PLPP4 (ENSAPLG00000011003) #9	ENSAPLG00000018439 #10	ENSAPLG00000025076 #10	MCMBP (ENSAPLG00000009939) #11	ENSAPLG00000028455	ENSAPLG00000021679 #12	ENSAPLG00000021626 #12	ENSAPLG00000029441 #13	TIAL1 (ENSAPLG00000009088) #16	RGS10 (ENSAPLG00000009045) #19	ENSAPLG00000031123 ##20	ENSAPLG00000007885 ##20	PRDX3 (ENSAPLG00000021984) #22	SFXN4 (ENSAPLG00000007674) #21	ENSAPLG00000007524	EIF3A (ENSAPLG00000006637) #24	NANOS1 (ENSAPLG00000021595)	CACUL1 (ENSAPLG00000006462) #26	ENSAPLG00000001060	FAM204A (ENSAPLG00000006401) #28	RAB11FIP2 (ENSAPLG00000006278) #29	EMX2 (ENSAPLG00000024273) #31	PDZD8 (ENSAPLG00000022941) #32	SLC18A2 (ENSAPLG00000010707) #33	ENSAPLG00000010704	VAX1 (ENSAPLG00000010700) #35	SHTN1 (ENSAPLG00000010399) #37	ENO4 (ENSAPLG00000010075)
Phasianidae	ANCESTRAL SPECIES	6	ENSGT00940000156955	ENSGT00940000155157	ENSGT00940000157052	ENSGT00390000011476	ENSGT00500000044926	ENSGT00940000155447	ENSGT00390000004068	ENSGT00940000158288 #9	ENSGT00940000156602 #10	ENSGT00390000017265 #11	ENSGT00940000155996 #12	ENSGT00940000159204 #13	ENSGT00940000154962.B	ENSGT00940000161426 #19	ENSGT00940000160702.b #20	ENSGT00940000153430.a.b #22	ENSGT01030000234641.a.b #21	ENSGT00940000164222	ENSGT00730000111063 #24	ENSGT00950000183135.B.b	ENSGT00390000000403 #26	ENSGT00940000164128.a	ENSGT00390000008978 #28	ENSGT00940000158482 #29	ENSGT00940000157425.B #31	ENSGT00390000017746 #32	ENSGT00940000157593 #33	ENSGT00700000104522 #34	ENSGT00940000161152 #35	ENSGT00510000048167.a #37	ENSGT00950000182805.a.b
Japanese quail	MODERN SPECIES	24	HTRA1 (ENSCJPG00005020160)	PLEKHA1 (ENSCJPG00005020159)	TACC2 (ENSCJPG00005020158)	NSMCE4A (ENSCJPG00005020157)	ATE1 (ENSCJPG00005020156)	FGFR2 (ENSCJPG00005020154)	WDR11 (ENSCJPG00005020153)	PLPP4 (ENSCJPG00005020152) #9	SEC23IP (ENSCJPG00005020147) #10	MCMBP (ENSCJPG00005020146) #11	INPP5F (ENSCJPG00005020145) #12	BAG3 (ENSCJPG00005020144) #13	ENSCJPG00005020143	RGS10 (ENSCJPG00005020142) #19	GRK5 (ENSCJPG00005020139) #20	PRDX3 (ENSCJPG00005020137) #22	SFXN4 (ENSCJPG00005020136) #21	ENSCJPG00005020135	EIF3A (ENSCJPG00005020132) #24	NANOS1 (ENSCJPG00005020131)	CACUL1 (ENSCJPG00005020128) #26	ENSCJPG00005020127	FAM204A (ENSCJPG00005020126) #28	RAB11FIP2 (ENSCJPG00005020123) #29	ENSCJPG00005020122	EMX2 (ENSCJPG00005020121) #31	PDZD8 (ENSCJPG00005020120) #32	SLC18A2 (ENSCJPG00005020119) #33	KCNK18 (ENSCJPG00005020118) #34	VAX1 (ENSCJPG00005020117) #35	SHTN1 (ENSCJPG00005020115) #37
Phasianidae_b	ANCESTRAL SPECIES	6	ENSGT00940000156955	ENSGT00940000155157	ENSGT00940000157052	ENSGT00390000011476	ENSGT00500000044926	ENSGT00940000155447	ENSGT00390000004068	ENSGT00940000158288 #9	ENSGT00940000156602 #10	ENSGT00390000017265 #11	ENSGT00940000155996 #12	ENSGT00940000159204 #13	ENSGT00940000154962.B	ENSGT00940000161426 #19	ENSGT00940000160702.b #20	ENSGT00940000153430.a.b #22	ENSGT01030000234641.a.b #21	ENSGT00940000164222	ENSGT00730000111063 #24	ENSGT00950000183135.B.b	ENSGT00390000000403 #26	ENSGT00940000164128.a	ENSGT00390000008978 #28	ENSGT00940000158482 #29	ENSGT00940000157425.B #31	ENSGT00390000017746 #32	ENSGT00940000157593 #33	ENSGT00700000104522 #34	ENSGT00940000161152 #35	ENSGT00510000048167.a #37	ENSGT00950000182805.a.b
Chicken	MODERN SPECIES	35	HTRA1 (ENSGALG00010001705)	PLEKHA1 (ENSGALG00010001702)	TACC2 (ENSGALG00010001465)	NSMCE4A (ENSGALG00010001432)	ATE1 (ENSGALG00010001426)	FGFR2 (ENSGALG00010001411)	WDR11 (ENSGALG00010001398)	PLPP4 (ENSGALG00010001287) #9	SEC23IP (ENSGALG00010002396) #10	MCMBP (ENSGALG00010002387) #11	INPP5F (ENSGALG00010002383) #12	BAG3 (ENSGALG00010002371) #13	TIAL1 (ENSGALG00010002361)	RGS10 (ENSGALG00010002277) #19	GRK5 (ENSGALG00010002251) #20	PRDX3 (ENSGALG00010002225) #22	SFXN4 (ENSGALG00010002202) #21	FAM45A (ENSGALG00010002196)	EIF3A (ENSGALG00010002150) #24	NANOS1 (ENSGALG00010002766)	CACUL1 (ENSGALG00010002146) #26	PRLHR (ENSGALG00010002056)	FAM204A (ENSGALG00010001972) #28	RAB11FIP2 (ENSGALG00010001958) #29	EMX2 (ENSGALG00010001948) #31	PDZD8 (ENSGALG00010022280) #32	SLC18A2 (ENSGALG00010022271) #33	KCNK18 (ENSGALG00010022257) #34	VAX1 (ENSGALG00010017907) #35	SHTN1 (ENSGALG00010022820) #37	ENO4 (ENSGALG00010022787)
Turkey	MODERN SPECIES	28	ENSMGAG00000019998	JAKMIP3 (ENSMGAG00000011861)	ENSMGAG00000011869	ENSMGAG00000011859	ENSMGAG00000011899	ENSMGAG00000015341	ENSMGAG00000011907	ENSMGAG00000011912	ENSMGAG00000011914	ENSMGAG00000011290 #28	ENSMGAG00000015338	ENSMGAG00000011298 #26	ENSMGAG00000011305 #24	ENSMGAG00000011328 #21	ENSMGAG00000011324	ENSMGAG00000011337 #22	ENSMGAG00000011341 ##20	ENSMGAG00000011359 #19	ENSMGAG00000017692 ##20	ENSMGAG00000011368	BAG3 (ENSMGAG00000011390) #13	ENSMGAG00000011398 #11	ENSMGAG00000017041 #12	SEC23IP (ENSMGAG00000011411) #10	ENSMGAG00000011434 #9	ENSMGAG00000018783	ENSMGAG00000022256	ENSMGAG00000011456	ENSMGAG00000011508	ENSMGAG00000011490	ENSMGAG00000011516
Neognathae_b	ANCESTRAL SPECIES	8	ENSGT00940000155157	ENSGT00940000157052	ENSGT00390000011476	ENSGT00500000044926	ENSGT00940000155447	ENSGT00390000004068	ENSGT00940000158288 #9	ENSGT00940000156602 #10	ENSGT00390000017265 #11	ENSGT00940000155996 #12	ENSGT00940000159204 #13	ENSGT00940000154962.B	ENSGT00940000160482 #16	ENSGT00940000161426 #19	ENSGT00940000160702.b #20	ENSGT00940000153430.a.b #22	ENSGT01030000234641.a.b #21	ENSGT00940000164222	ENSGT00730000111063 #24	ENSGT00950000183135.B.b	ENSGT00390000000403 #26	ENSGT00940000164128.a	ENSGT00390000008978 #28	ENSGT00940000158482 #29	ENSGT00940000157425.B #31	ENSGT00390000017746 #32	ENSGT00940000157593 #33	ENSGT00700000104522 #34	ENSGT00940000166380	ENSGT00940000161152 #35	ENSGT00510000048167.a #37
Passeriformes	ANCESTRAL SPECIES	10	ENSGT00940000155157	ENSGT00940000157052	ENSGT00390000011476	ENSGT00500000044926	ENSGT00940000155447	ENSGT00390000004068	ENSGT00940000158288 #9	ENSGT00940000156602 #10	ENSGT00390000017265 #11	ENSGT00940000155996 #12	ENSGT00940000159204 #13	ENSGT00940000154962.B	ENSGT00940000160482 #16	ENSGT00940000161426 #19	ENSGT00940000160702.b #20	ENSGT00940000153430.a.b #22	ENSGT01030000234641.a.b #21	ENSGT00940000164222	ENSGT00730000111063 #24	ENSGT00950000183135.B.b	ENSGT00390000000403 #26	ENSGT00940000164128.a	ENSGT00390000008978 #28	ENSGT00940000158482 #29	ENSGT00940000157425.B #31	ENSGT00390000017746 #32	ENSGT00940000157593 #33	ENSGT00700000104522 #34	ENSGT00940000166380	ENSGT00940000161152 #35	ENSGT00510000048167.a #37
Great tit	MODERN SPECIES	26	HTRA1 (ENSPMJG00000005725)	PLEKHA1 (ENSPMJG00000005718)	TACC2 (ENSPMJG00000005700)	NSMCE4A (ENSPMJG00000005697)	ATE1 (ENSPMJG00000005695)	FGFR2 (ENSPMJG00000005686)	WDR11 (ENSPMJG00000005652)	PLPP4 (ENSPMJG00000005646) #9	SEC23IP (ENSPMJG00000005643) #10	MCMBP (ENSPMJG00000005642) #11	INPP5F (ENSPMJG00000005637) #12	BAG3 (ENSPMJG00000005635) #13	ENSPMJG00000005634	RGS10 (ENSPMJG00000005630) #19	GRK5 (ENSPMJG00000005626) #20	PRDX3 (ENSPMJG00000005590) #22	SFXN4 (ENSPMJG00000005585) #21	ENSPMJG00000005582	EIF3A (ENSPMJG00000005575) #24	NANOS1 (ENSPMJG00000005572)	CACUL1 (ENSPMJG00000005563) #26	ENSPMJG00000005551	FAM204A (ENSPMJG00000005546) #28	RAB11FIP2 (ENSPMJG00000005542) #29	EMX2 (ENSPMJG00000005539) #31	PDZD8 (ENSPMJG00000005535) #32	SLC18A2 (ENSPMJG00000005533) #33	ENSPMJG00000005530	VAX1 (ENSPMJG00000005525) #35	SHTN1 (ENSPMJG00000005521) #37	ENO4 (ENSPMJG00000005517)
Passeriformes_d	ANCESTRAL SPECIES	7	ENSGT00940000155157	ENSGT00940000157052	ENSGT00390000011476	ENSGT00500000044926	ENSGT00940000155447	ENSGT00390000004068	ENSGT00940000158288 #9	ENSGT00940000156602 #10	ENSGT00390000017265 #11	ENSGT00940000155996 #12	ENSGT00940000159204 #13	ENSGT00940000154962.B	ENSGT00940000160482 #16	ENSGT00940000161426 #19	ENSGT00940000160702.b #20	ENSGT00940000153430.a.b #22	ENSGT01030000234641.a.b #21	ENSGT00940000164222	ENSGT00730000111063 #24	ENSGT00950000183135.B.b	ENSGT00390000000403 #26	ENSGT00940000164128.a	ENSGT00390000008978 #28	ENSGT00940000158482 #29	ENSGT00940000157425.B #31	ENSGT00390000017746 #32	ENSGT00940000157593 #33	ENSGT00700000104522 #34	ENSGT00940000166380	ENSGT00940000161152 #35	ENSGT00510000048167.a #37
Flycatcher	MODERN SPECIES	25	TACC2 (ENSFALG00000002148)	NSMCE4A (ENSFALG00000002150)	ATE1 (ENSFALG00000002151)	FGFR2 (ENSFALG00000002152)	WDR11 (ENSFALG00000002154)	ENSFALG00000024601	PLPP4 (ENSFALG00000026547) #9	SEC23IP (ENSFALG00000002159) #10	MCMBP (ENSFALG00000002162) #11	INPP5F (ENSFALG00000002164) #12	ENSFALG00000024667	BAG3 (ENSFALG00000002165) #13	ENSFALG00000002173	RGS10 (ENSFALG00000002181) #19	GRK5 (ENSFALG00000002184) #20	PRDX3 (ENSFALG00000024188) #22	ENSFALG00000002189 #21	DENND10 (ENSFALG00000002191) #23	EIF3A (ENSFALG00000002192) #24	NANOS1 (ENSFALG00000002196)	CACUL1 (ENSFALG00000024371) #26	ENSFALG00000015039	FAM204A (ENSFALG00000002199) #28	ENSFALG00000024615	RAB11FIP2 (ENSFALG00000002200) #29	EMX2 (ENSFALG00000024314) #31	ENSFALG00000023408	PDZD8 (ENSFALG00000002202) #32	SLC18A2 (ENSFALG00000002203) #33	ENSFALG00000002204	VAX1 (ENSFALG00000026819) #35
Passeriformes_g	ANCESTRAL SPECIES	8	ENSGT00940000155157	ENSGT00940000157052	ENSGT00390000011476	ENSGT00500000044926	ENSGT00940000155447	ENSGT00390000004068	ENSGT00940000158288 #9	ENSGT00940000156602 #10	ENSGT00390000017265 #11	ENSGT00940000155996 #12	ENSGT00940000159204 #13	ENSGT00940000154962.B	ENSGT00940000160482 #16	ENSGT00940000161426 #19	ENSGT00940000160702.b #20	ENSGT00940000153430.a.b #22	ENSGT01030000234641.a.b #21	ENSGT00940000164222	ENSGT00730000111063 #24	ENSGT00950000183135.B.b	ENSGT00390000000403 #26	ENSGT00940000164128.a	ENSGT00390000008978 #28	ENSGT00940000158482 #29	ENSGT00940000157425.B #31	ENSGT00390000017746 #32	ENSGT00940000157593 #33	ENSGT00700000104522 #34	ENSGT00940000166380	ENSGT00940000161152 #35	ENSGT00510000048167.a #37
Passeroidea	ANCESTRAL SPECIES	7	ENSGT00940000155157	ENSGT00940000157052	ENSGT00390000011476	ENSGT00500000044926	ENSGT00940000155447	ENSGT00390000004068	ENSGT00940000158288 #9	ENSGT00940000156602 #10	ENSGT00390000017265 #11	ENSGT00940000155996 #12	ENSGT00940000159204 #13	ENSGT00940000154962.B	ENSGT00940000160482 #16	ENSGT00940000161426 #19	ENSGT00940000160702.b #20	ENSGT00940000153430.a.b #22	ENSGT01030000234641.a.b #21	ENSGT00940000164222	ENSGT00730000111063 #24	ENSGT00950000183135.B.b	ENSGT00390000000403 #26	ENSGT00940000164128.a	ENSGT00390000008978 #28	ENSGT00940000158482 #29	ENSGT00940000157425.B #31	ENSGT00390000017746 #32	ENSGT00940000157593 #33	ENSGT00940000165789	ENSGT00940000166380	ENSGT00940000161152 #35	ENSGT00510000048167.a #37
Common canary	MODERN SPECIES	7	PLEKHA1 (ENSSCAG00000013721)	TACC2 (ENSSCAG00000013757)	NSMCE4A (ENSSCAG00000013790)	ATE1 (ENSSCAG00000013795)	FGFR2 (ENSSCAG00000013802)	ENSSCAG00000013814	WDR11 (ENSSCAG00000013823)	PLPP4 (ENSSCAG00000013843) #9	SEC23IP (ENSSCAG00000013890) #10	MCMBP (ENSSCAG00000014009) #11	INPP5F (ENSSCAG00000014059) #12	BAG3 (ENSSCAG00000014200) #13	TIAL1 (ENSSCAG00000014203) #16	RGS10 (ENSSCAG00000014206) #19	GRK5 (ENSSCAG00000014217) #20	PRDX3 (ENSSCAG00000014236) #22	SFXN4 (ENSSCAG00000014243) #21	ENSSCAG00000014253	EIF3A (ENSSCAG00000014260) #24	NANOS1 (ENSSCAG00000014280)	CACUL1 (ENSSCAG00000014288) #26	ENSSCAG00000014301	FAM204A (ENSSCAG00000014304) #28	RAB11FIP2 (ENSSCAG00000014312) #29	EMX2 (ENSSCAG00000014317) #31	PDZD8 (ENSSCAG00000014321) #32	SLC18A2 (ENSSCAG00000014325) #33	ENSSCAG00000014332	SHTN1 (ENSSCAG00000014384) #37	ENO4 (ENSSCAG00000014501)	HSPA12A (ENSSCAG00000014511)
Medium ground finch	MODERN SPECIES	154							WDR11 (ENSGFOG00000011749)	PLPP4 (ENSGFOG00000011826) #9	SEC23IP (ENSGFOG00000011864) #10	MCMBP (ENSGFOG00000012006) #11	INPP5F (ENSGFOG00000012033) #12	BAG3 (ENSGFOG00000012229) #13	ENSGFOG00000012234	RGS10 (ENSGFOG00000012239) #19	GRK5 (ENSGFOG00000012252) #20	PRDX3 (ENSGFOG00000012269) #22	SFXN4 (ENSGFOG00000012273) #21	DENND10 (ENSGFOG00000012278) #23	EIF3A (ENSGFOG00000012296) #24	CACUL1 (ENSGFOG00000012331) #26	ENSGFOG00000012334	FAM204A (ENSGFOG00000012337) #28	RAB11FIP2 (ENSGFOG00000012341) #29	EMX2 (ENSGFOG00000012344) #31	PDZD8 (ENSGFOG00000012352) #32	ENSGFOG00000012365 #33
Neognathae_c	ANCESTRAL SPECIES	8	ENSGT00940000155157	ENSGT00940000157052	ENSGT00390000011476	ENSGT00500000044926	ENSGT00940000155447	ENSGT00390000004068	ENSGT00940000158288 #9	ENSGT00940000156602 #10	ENSGT00390000017265 #11	ENSGT00940000155996 #12	ENSGT00940000159204 #13	ENSGT00940000154962.B	ENSGT00940000160482 #16	ENSGT00940000161426 #19	ENSGT00940000160702.b #20	ENSGT00940000153430.a.b #22	ENSGT01030000234641.a.b #21	ENSGT00940000164222	ENSGT00730000111063 #24	ENSGT00950000183135.B.b	ENSGT00390000000403 #26	ENSGT00940000164128.a	ENSGT00390000008978 #28	ENSGT00940000158482 #29	ENSGT00940000157425.B #31	ENSGT00390000017746 #32	ENSGT00940000157593 #33	ENSGT00940000166380	ENSGT00940000161152 #35	ENSGT00510000048167.a #37	ENSGT00950000182805.a.b
Kakapo	MODERN SPECIES	22	PLEKHA1 (ENSSHBG00005004075)	TACC2 (ENSSHBG00005003706)	NSMCE4A (ENSSHBG00005003627)	ATE1 (ENSSHBG00005003603)	FGFR2 (ENSSHBG00005003568)	WDR11 (ENSSHBG00005003553)	PLPP4 (ENSSHBG00005003537) #9	SEC23IP (ENSSHBG00005003520) #10	MCMBP (ENSSHBG00005003485) #11	INPP5F (ENSSHBG00005003229) #12	BAG3 (ENSSHBG00005003039) #13	ENSSHBG00005003028	ENSSHBG00005003012	RGS10 (ENSSHBG00005002990) #19	GRK5 (ENSSHBG00005002953) #20	PRDX3 (ENSSHBG00005002865) #22	SFXN4 (ENSSHBG00005002846) #21	ENSSHBG00005002832	EIF3A (ENSSHBG00005002799) #24	NANOS1 (ENSSHBG00005002776)	CACUL1 (ENSSHBG00005002756) #26	ENSSHBG00005002745	FAM204A (ENSSHBG00005002729) #28	RAB11FIP2 (ENSSHBG00005002712) #29	EMX2 (ENSSHBG00005002702) #31	PDZD8 (ENSSHBG00005000838) #32	SLC18A2 (ENSSHBG00005000837) #33	ENSSHBG00005000836	VAX1 (ENSSHBG00005000835) #35	SHTN1 (ENSSHBG00005000834) #37	ENO4 (ENSSHBG00005000833)
Golden eagle	MODERN SPECIES	2	ENSACCG00020006849	PLEKHA1 (ENSACCG00020006872)	ENSACCG00020006968	NSMCE4A (ENSACCG00020007065)	ATE1 (ENSACCG00020007114)	FGFR2 (ENSACCG00020007148)	WDR11 (ENSACCG00020007177)	PLPP4 (ENSACCG00020007199) #9	SEC23IP (ENSACCG00020007215) #10	MCMBP (ENSACCG00020007244) #11	INPP5F (ENSACCG00020007437) #12	BAG3 (ENSACCG00020007545) #13	TIAL1 (ENSACCG00020007557) #16	RGS10 (ENSACCG00020007575) #19	GRK5 (ENSACCG00020007658) #20	PRDX3 (ENSACCG00020007769) #22	SFXN4 (ENSACCG00020007778) #21	ENSACCG00020007799	EIF3A (ENSACCG00020007813) #24	NANOS1 (ENSACCG00020007832)	CACUL1 (ENSACCG00020007856) #26	ENSACCG00020007882	FAM204A (ENSACCG00020007890) #28	RAB11FIP2 (ENSACCG00020007904) #29	EMX2 (ENSACCG00020007914) #31	PDZD8 (ENSACCG00020007923) #32	SLC18A2 (ENSACCG00020007935) #33	ENSACCG00020007947	VAX1 (ENSACCG00020007958) #35	SHTN1 (ENSACCG00020007966) #37	ENO4 (ENSACCG00020007991)
African ostrich	MODERN SPECIES	393										SEC23IP (ENSSCUG00000003377) #10	MCMBP (ENSSCUG00000003379) #11	INPP5F (ENSSCUG00000003381) #12	BAG3 (ENSSCUG00000003384) #13	ENSSCUG00000003392	RGS10 (ENSSCUG00000003399) #19	PRDX3 (ENSSCUG00000003427) #22	ENSSCUG00000003430 #21	DENND10 (ENSSCUG00000003434) #23	ENSSCUG00000003436	EIF3A (ENSSCUG00000003454) #24	CACUL1 (ENSSCUG00000003490) #26	ENSSCUG00000003496	FAM204A (ENSSCUG00000003500) #28	RAB11FIP2 (ENSSCUG00000003504) #29	EMX2 (ENSSCUG00000003507) #31	PDZD8 (ENSSCUG00000003511) #32	SLC18A2 (ENSSCUG00000005382) #33	ENSSCUG00000005383	SHTN1 (ENSSCUG00000005385) #37	ENO4 (ENSSCUG00000005387)	HSPA12A (ENSSCUG00000005401)
Australian saltwater crocodile	MODERN SPECIES	68	ENSCPRG00005010107	TACC2 (ENSCPRG00005010117)	NSMCE4A (ENSCPRG00005010129)	ATE1 (ENSCPRG00005010141)	FGFR2 (ENSCPRG00005010191)	WDR11 (ENSCPRG00005010238)	PLPP4 (ENSCPRG00005010400) #9	ENSCPRG00005010403	SEC23IP (ENSCPRG00005010423) #10	MCMBP (ENSCPRG00005010437) #11	INPP5F (ENSCPRG00005010451) #12	BAG3 (ENSCPRG00005010481) #13	TIAL1 (ENSCPRG00005010488) #16	ENSCPRG00005010516	GRK5 (ENSCPRG00005010553) #20	PRDX3 (ENSCPRG00005010560) #22	ENSCPRG00005010572	EIF3A (ENSCPRG00005010591) #24	NANOS1 (ENSCPRG00005010610)	CACUL1 (ENSCPRG00005010620) #26	PRLHR (ENSCPRG00005010634) #27	ENSCPRG00005010636	FAM204A (ENSCPRG00005010653) #28	RAB11FIP2 (ENSCPRG00005010665) #29	ENSCPRG00005010671	PDZD8 (ENSCPRG00005010673) #32	SLC18A2 (ENSCPRG00005010681) #33	ENSCPRG00005010684	SHTN1 (ENSCPRG00005010686) #37	ENO4 (ENSCPRG00005010695)	HSPA12A (ENSCPRG00005010703)
Cryptodira	ANCESTRAL SPECIES	6	ENSGT00940000161718	ENSGT00940000157052	ENSGT00390000011476	ENSGT00500000044926	ENSGT00940000155447	ENSGT00390000004068	ENSGT00940000158288 #9	ENSGT00940000156602 #10	ENSGT00390000017265 #11	ENSGT00940000155996 #12	ENSGT00940000159204 #13	ENSGT00940000154962.B	ENSGT00940000160482 #16	ENSGT00940000161426 #19	ENSGT00940000160702.b #20	ENSGT00940000153430.a.b #22	ENSGT01030000234641.a.b #21	ENSGT00940000164222	ENSGT00730000111063 #24	ENSGT00950000183135.B.b	ENSGT00390000000403 #26	ENSGT00940000162008 #27	ENSGT00940000164128.a	ENSGT00390000008978 #28	ENSGT00940000158482 #29	ENSGT00940000157425.B #31	ENSGT00390000017746 #32	ENSGT00940000157593 #33	ENSGT00700000104522 #34	ENSGT00940000161152 #35	ENSGT00510000048167.a #37
Chinese turtle	MODERN SPECIES	154	PLEKHA1 (ENSPSIG00000010906)	TACC2 (ENSPSIG00000010319)	NSMCE4A (ENSPSIG00000010064)	ATE1 (ENSPSIG00000009429)	FGFR2 (ENSPSIG00000007758)	WDR11 (ENSPSIG00000007623)	PLPP4 (ENSPSIG00000007283) #9	ENSPSIG00000000417	MCMBP (ENSPSIG00000006179) #11	INPP5F (ENSPSIG00000016807) #12	SEC23IP (ENSPSIG00000016139) #10	BAG3 (ENSPSIG00000015275) #13	ENSPSIG00000013690	ENSPSIG00000013652	GRK5 (ENSPSIG00000008000) #20	PRDX3 (ENSPSIG00000007308) #22	SFXN4 (ENSPSIG00000006657) #21	DENND10 (ENSPSIG00000006426) #23	ENSPSIG00000000412	EIF3A (ENSPSIG00000006102) #24	ENSPSIG00000000407	CACUL1 (ENSPSIG00000017349) #26	PRLHR (ENSPSIG00000017264) #27	ENSPSIG00000000403	FAM204A (ENSPSIG00000016004) #28	RAB11FIP2 (ENSPSIG00000015960) #29	EMX2 (ENSPSIG00000015205) #31	ENSPSIG00000000395	PDZD8 (ENSPSIG00000015048) #32	SLC18A2 (ENSPSIG00000014423) #33	ENSPSIG00000014326
Testudinoidea	DUPLICATION
Testudinoidea	ANCESTRAL SPECIES	2	ENSGT00940000155157	ENSGT00940000161718	ENSGT00940000157052	ENSGT00390000011476	ENSGT00500000044926	ENSGT00940000155447	ENSGT00390000004068	ENSGT00940000158288 #9	ENSGT00940000156602 #10	ENSGT00390000017265 #11	ENSGT00940000155996 #12	ENSGT00940000159204 #13	ENSGT00940000160482 #16	ENSGT00940000161426 #19	ENSGT00940000160702.b #20	ENSGT00940000153430.a.b.g #22	ENSGT01030000234641.a.b #21	ENSGT00940000164222	ENSGT00730000111063 #24	ENSGT00950000183135.B.b	ENSGT00390000000403 #26	ENSGT00940000162008 #27	ENSGT00940000164128.a	ENSGT00390000008978 #28	ENSGT00940000158482 #29	ENSGT00940000157425.B #31	ENSGT00390000017746 #32	ENSGT00940000157593 #33	ENSGT00700000104522 #34	ENSGT00940000161152 #35	ENSGT00510000048167.a #37
Testudinidae	ANCESTRAL SPECIES	9	ENSGT00940000161718	ENSGT00940000157052	ENSGT00390000011476	ENSGT00500000044926	ENSGT00940000155447	ENSGT00390000004068	ENSGT00940000158288 #9	ENSGT00940000156602 #10	ENSGT00390000017265 #11	ENSGT00940000155996 #12	ENSGT00940000159204 #13	ENSGT00940000160482 #16	ENSGT00940000161426 #19	ENSGT00940000160702.a.a ##20	ENSGT00940000160702.a.b ##20	ENSGT00940000153430.a.b.g #22	ENSGT01030000234641.a.b #21	ENSGT00940000164222	ENSGT00730000111063 #24	ENSGT00950000183135.B.b	ENSGT00390000000403 #26	ENSGT00940000164128.a	ENSGT00390000008978 #28	ENSGT00940000158482 #29	ENSGT00940000157425.B #31	ENSGT00390000017746 #32	ENSGT00940000157593 #33	ENSGT00700000104522 #34	ENSGT00940000161152 #35	ENSGT00510000048167.a #37	ENSGT00950000182805.a.b
Goode s thornscrub tortoise	MODERN SPECIES	21	NSMCE4A (ENSGEVG00005020083)	ATE1 (ENSGEVG00005020042)	ENSGEVG00005020017	ENSGEVG00005020010	ENSGEVG00005019994	WDR11 (ENSGEVG00005019974)	PLPP4 (ENSGEVG00005019965) #9	SEC23IP (ENSGEVG00005019936) #10	MCMBP (ENSGEVG00005019925) #11	INPP5F (ENSGEVG00005019898) #12	BAG3 (ENSGEVG00005019883) #13	TIAL1 (ENSGEVG00005019870) #16	RGS10 (ENSGEVG00005019839) #19	ENSGEVG00005019838 ##20	ENSGEVG00005019814 ##20	PRDX3 (ENSGEVG00005019794) #22	SFXN4 (ENSGEVG00005019784) #21	ENSGEVG00005019776	EIF3A (ENSGEVG00005019761) #24	NANOS1 (ENSGEVG00005019751)	CACUL1 (ENSGEVG00005019742) #26	ENSGEVG00005019732	FAM204A (ENSGEVG00005019728) #28	RAB11FIP2 (ENSGEVG00005019720) #29	EMX2 (ENSGEVG00005019717) #31	PDZD8 (ENSGEVG00005019710) #32	SLC18A2 (ENSGEVG00005019697) #33	ENSGEVG00005019691	VAX1 (ENSGEVG00005019680) #35	SHTN1 (ENSGEVG00005019656) #37	ENO4 (ENSGEVG00005019604)
Abingdon island giant tortoise	MODERN SPECIES	754															GRK5 (ENSCABG00000009676) ##20	ENSCABG00000009682 #22	SFXN4 (ENSCABG00000009684) #21	ENSCABG00000009686	EIF3A (ENSCABG00000009703) #24	NANOS1 (ENSCABG00000009711)	ENSCABG00000009713	CACUL1 (ENSCABG00000009715) #26	ENSCABG00000009716	FAM204A (ENSCABG00000009718) #28	ENSCABG00000009720	RAB11FIP2 (ENSCABG00000009721) #29	EMX2 (ENSCABG00000009722) #31	PDZD8 (ENSCABG00000009724) #32	SLC18A2 (ENSCABG00000009726) #33	KCNK18 (ENSCABG00000009763) #34	VAX1 (ENSCABG00000009765) #35
Emydidae	ANCESTRAL SPECIES	6	ENSGT00940000155157	ENSGT00940000161718	ENSGT00940000157052	ENSGT00390000011476	ENSGT00500000044926	ENSGT00940000155447	ENSGT00390000004068	ENSGT00940000158288 #9	ENSGT00940000156602 #10	ENSGT00390000017265 #11	ENSGT00940000155996 #12	ENSGT00940000159204 #13	ENSGT00940000160482 #16	ENSGT00940000161426 #19	ENSGT00940000160702.b #20	ENSGT00940000153430.a.b.g #22	ENSGT01030000234641.a.b #21	ENSGT00940000164222	ENSGT00730000111063 #24	ENSGT00950000183135.B.b	ENSGT00390000000403 #26	ENSGT00940000162008 #27	ENSGT00940000164128.a	ENSGT00390000008978 #28	ENSGT00940000158482 #29	ENSGT00940000157425.B #31	ENSGT00390000017746 #32	ENSGT00940000157593 #33	ENSGT00700000104522 #34	ENSGT00940000161152 #35	ENSGT00510000048167.a #37
Three-toed box turtle	MODERN SPECIES	39	BTBD16 (ENSTMTG00000019086)	ENSTMTG00000019055	NSMCE4A (ENSTMTG00000019033)	ATE1 (ENSTMTG00000018984)	FGFR2 (ENSTMTG00000018950)	WDR11 (ENSTMTG00000018901)	PLPP4 (ENSTMTG00000018885) #9	SEC23IP (ENSTMTG00000018842) #10	MCMBP (ENSTMTG00000018812) #11	INPP5F (ENSTMTG00000018304) #12	ENSTMTG00000018261 #13	ENSTMTG00000018249 #13	TIAL1 (ENSTMTG00000018217) #16	RGS10 (ENSTMTG00000018181) #19	GRK5 (ENSTMTG00000017948) ##20	PRDX3 (ENSTMTG00000017906) #22	SFXN4 (ENSTMTG00000017883) #21	ENSTMTG00000017839	EIF3A (ENSTMTG00000017793) #24	NANOS1 (ENSTMTG00000017785)	CACUL1 (ENSTMTG00000017777) #26	PRLHR (ENSTMTG00000017752) #27	ENSTMTG00000017739	FAM204A (ENSTMTG00000017723) #28	RAB11FIP2 (ENSTMTG00000017710) #29	EMX2 (ENSTMTG00000017701) #31	PDZD8 (ENSTMTG00000017682) #32	SLC18A2 (ENSTMTG00000017630) #33	ENSTMTG00000017617	VAX1 (ENSTMTG00000017611) #35	SHTN1 (ENSTMTG00000017571) #37
painted turtle	MODERN SPECIES	15	HMX3 (ENSCPBG00000028093)	ACADSB (ENSCPBG00000028097)	IKZF5 (ENSCPBG00000028099)	ENSCPBG00000000116	C10orf88 (ENSCPBG00000000128)	ENSCPBG00000000152	ENSCPBG00000000160	ENSCPBG00000000175	ENSCPBG00000000282	HTRA1 (ENSCPBG00000000966)	PLEKHA1 (ENSCPBG00000001016)	BAG3 (ENSCPBG00000001092) #13	TIAL1 (ENSCPBG00000001103) #16	RGS10 (ENSCPBG00000001134) #19	GRK5 (ENSCPBG00000001153) #20	PRDX3 (ENSCPBG00000001195) #22	SFXN4 (ENSCPBG00000001202) #21	ENSCPBG00000001216	EIF3A (ENSCPBG00000001266) #24	NANOS1 (ENSCPBG00000002172)	CACUL1 (ENSCPBG00000002191) #26	PRLHR (ENSCPBG00000002209) #27	ENSCPBG00000002224	ENSCPBG00000002230 #28	RAB11FIP2 (ENSCPBG00000002254) #29	EMX2 (ENSCPBG00000002268) #31	PDZD8 (ENSCPBG00000002285) #32	SLC18A2 (ENSCPBG00000002329) #33	KCNK18 (ENSCPBG00000002360) #34	VAX1 (ENSCPBG00000002374) #35	SHTN1 (ENSCPBG00000002394) #37
Testudinoidea	ANCESTRAL SPECIES																	ENSGT00940000153430.a.b.h #22
Testudinidae	ANCESTRAL SPECIES																	ENSGT00940000153430.a.b.h #22
Abingdon island giant tortoise	MODERN SPECIES	2265																ENSCABG00000013129 #22
Lepidosauria	ANCESTRAL SPECIES	8	ENSGT00940000157052	ENSGT00390000011476	ENSGT00500000044926	ENSGT00940000155447	ENSGT00390000004068	ENSGT00940000158288 #9	ENSGT00940000156602 #10	ENSGT00390000017265 #11	ENSGT00960000190376	ENSGT00940000155996 #12	ENSGT00940000159204 #13	ENSGT00940000154962.B	ENSGT00940000160482 #16	ENSGT00940000161426 #19	ENSGT00940000160702.b #20	ENSGT00940000153430.a.b #22	ENSGT01030000234641.a.b #21	ENSGT00940000164222	ENSGT00730000111063 #24	ENSGT00950000183135.B.b	ENSGT00390000000403 #26	ENSGT00940000162008 #27	ENSGT00940000164128.a	ENSGT00390000008978 #28	ENSGT00940000158482 #29	ENSGT00940000157425.B #31	ENSGT00390000017746 #32	ENSGT00940000157593 #33	ENSGT00700000104522 #34	ENSGT00940000166380	ENSGT00940000161152 #35
Episquamata	ANCESTRAL SPECIES	2	ENSGT00940000161718	ENSGT00940000157052	ENSGT00390000011476	ENSGT00500000044926	ENSGT00940000155447	ENSGT00390000004068	ENSGT00940000158288 #9	ENSGT00940000156602 #10	ENSGT00390000017265 #11	ENSGT00940000155996 #12	ENSGT00940000159204 #13	ENSGT00940000154962.B	ENSGT00940000160482 #16	ENSGT00940000161426 #19	ENSGT00940000160702.b #20	ENSGT00940000153430.a.b #22	ENSGT01030000234641.a.b #21	ENSGT00940000164222	ENSGT00730000111063 #24	ENSGT00950000183135.B.b	ENSGT00390000000403 #26	ENSGT00940000162008 #27	ENSGT00940000164128.a	ENSGT00390000008978 #28	ENSGT00940000158482 #29	ENSGT00940000157425.B #31	ENSGT00390000017746 #32	ENSGT00940000157593 #33	ENSGT00700000104522 #34	ENSGT00940000166380	ENSGT00940000161152 #35
Laterata	ANCESTRAL SPECIES		ENSGT00940000155157	ENSGT00940000161718	ENSGT00940000157052	ENSGT00390000011476	ENSGT00500000044926	ENSGT00940000155447	ENSGT00390000004068	ENSGT00940000158288 #9	ENSGT00940000156602 #10	ENSGT00390000017265 #11	ENSGT00940000155996 #12	ENSGT00940000159204 #13	ENSGT00940000154962.B	ENSGT00940000161426 #19	ENSGT00940000160702.b #20	ENSGT00940000153430.a.b #22	ENSGT01030000234641.a.b #21	ENSGT00940000164222	ENSGT00730000111063 #24	ENSGT00950000183135.B.b	ENSGT00390000000403 #26	ENSGT00940000162008 #27	ENSGT00940000164128.a	ENSGT00390000008978 #28	ENSGT00940000158482 #29	ENSGT00940000157425.B #31	ENSGT00390000017746 #32	ENSGT00940000157593 #33	ENSGT00700000104522 #34	ENSGT00940000165789	ENSGT00940000161152 #35
Common wall lizard	MODERN SPECIES	13	BTBD16 (ENSPMRG00000006301)	TACC2 (ENSPMRG00000006314)	ENSPMRG00000006364	ATE1 (ENSPMRG00000006382)	FGFR2 (ENSPMRG00000006399)	WDR11 (ENSPMRG00000006420)	PLPP4 (ENSPMRG00000006469) #9	ENSPMRG00000006493	SEC23IP (ENSPMRG00000006499) #10	MCMBP (ENSPMRG00000006513) #11	INPP5F (ENSPMRG00000006527) #12	BAG3 (ENSPMRG00000006537) #13	ENSPMRG00000006541	RGS10 (ENSPMRG00000006569) #19	GRK5 (ENSPMRG00000006579) #20	PRDX3 (ENSPMRG00000006596) #22	ENSPMRG00000006605	EIF3A (ENSPMRG00000006618) #24	NANOS1 (ENSPMRG00000006637)	CACUL1 (ENSPMRG00000006643) #26	ENSPMRG00000006651 #27	ENSPMRG00000006656 #27	ENSPMRG00000006657	ENSPMRG00000006659	FAM204A (ENSPMRG00000006664) #28	RAB11FIP2 (ENSPMRG00000006683) #29	EMX2 (ENSPMRG00000006691) #31	PDZD8 (ENSPMRG00000006695) #32	SLC18A2 (ENSPMRG00000006698) #33	KCNK18 (ENSPMRG00000006704) #34	ENSPMRG00000006710
Argentine black and white tegu	MODERN SPECIES	65	PLEKHA1 (ENSSMRG00000005536)	BTBD16 (ENSSMRG00000005515)	TACC2 (ENSSMRG00000005489)	ENSSMRG00000005469	ATE1 (ENSSMRG00000005447)	FGFR2 (ENSSMRG00000005415)	WDR11 (ENSSMRG00000005374)	PLPP4 (ENSSMRG00000005367) #9	SEC23IP (ENSSMRG00000005344) #10	MCMBP (ENSSMRG00000004639) #11	INPP5F (ENSSMRG00000004622) #12	BAG3 (ENSSMRG00000004620) #13	TIAL1 (ENSSMRG00000004608) #16	ENSSMRG00000004590	GRK5 (ENSSMRG00000004549) #20	PRDX3 (ENSSMRG00000004533) #22	SFXN4 (ENSSMRG00000004528) #21	ENSSMRG00000004522	EIF3A (ENSSMRG00000003451) #24	NANOS1 (ENSSMRG00000003441)	CACUL1 (ENSSMRG00000003422) #26	PRLHR (ENSSMRG00000003404) #27	ENSSMRG00000003401	FAM204A (ENSSMRG00000003386) #28	ENSSMRG00000003380	RAB11FIP2 (ENSSMRG00000003366) #29	EMX2 (ENSSMRG00000003348) #31	PDZD8 (ENSSMRG00000003328) #32	SLC18A2 (ENSSMRG00000003317) #33	ENSSMRG00000003305	VAX1 (ENSSMRG00000003281) #35
Toxicofera	ANCESTRAL SPECIES	2	ENSGT00940000161718	ENSGT00940000157052	ENSGT00390000011476	ENSGT00500000044926	ENSGT00940000155447	ENSGT00390000004068	ENSGT00940000158288 #9	ENSGT00940000156602 #10	ENSGT00390000017265 #11	ENSGT00940000155996 #12	ENSGT00940000159204 #13	ENSGT00940000154962.B	ENSGT00940000160482 #16	ENSGT00940000161426 #19	ENSGT00940000160702.b #20	ENSGT00940000153430.a.b #22	ENSGT01030000234641.a.b #21	ENSGT00940000164222	ENSGT00730000111063 #24	ENSGT00950000183135.B.b	ENSGT00390000000403 #26	ENSGT00940000162008 #27	ENSGT00940000164128.a	ENSGT00390000008978 #28	ENSGT00940000158482 #29	ENSGT00940000157425.B #31	ENSGT00390000017746 #32	ENSGT00940000157593 #33	ENSGT00940000166380	ENSGT00940000161152 #35	ENSGT00510000048167.a #37
Elapidae	ANCESTRAL SPECIES	4	ENSGT00940000155157	ENSGT00940000161718	ENSGT00940000157052	ENSGT00390000011476	ENSGT00500000044926	ENSGT00940000155447	ENSGT00390000004068	ENSGT00940000158288 #9	ENSGT00940000156602 #10	ENSGT00390000017265 #11	ENSGT00940000155996 #12	ENSGT00940000159204 #13	ENSGT00940000154962.B	ENSGT00940000161426 #19	ENSGT00940000160702.b #20	ENSGT00940000153430.a.b #22	ENSGT01030000234641.a.b #21	ENSGT00940000164222	ENSGT00730000111063 #24	ENSGT00950000183135.B.b	ENSGT00390000000403 #26	ENSGT00940000162008 #27	ENSGT00940000164128.a	ENSGT00390000008978 #28	ENSGT00940000158482 #29	ENSGT00940000157425.B #31	ENSGT00390000017746 #32	ENSGT00940000157593 #33	ENSGT00940000166380	ENSGT00940000161152 #35	ENSGT00510000048167.a #37
Elapidae_a	ANCESTRAL SPECIES		ENSGT00940000155157	ENSGT00940000161718	ENSGT00940000157052	ENSGT00390000011476	ENSGT00500000044926	ENSGT00940000155447	ENSGT00390000004068	ENSGT00940000158288 #9	ENSGT00940000156602 #10	ENSGT00390000017265 #11	ENSGT00940000155996 #12	ENSGT00940000159204 #13	ENSGT00940000154962.B	ENSGT00940000161426 #19	ENSGT00940000160702.b #20	ENSGT00940000153430.a.b #22	ENSGT01030000234641.a.b #21	ENSGT00940000164222	ENSGT00730000111063 #24	ENSGT00950000183135.B.b	ENSGT00390000000403 #26	ENSGT00940000162008 #27	ENSGT00940000164128.a	ENSGT00390000008978 #28	ENSGT00940000158482 #29	ENSGT00940000157425.B #31	ENSGT00390000017746 #32	ENSGT00940000157593 #33	ENSGT00940000166380	ENSGT00940000161152 #35	ENSGT00510000048167.a #37
Acanthophiinae	ANCESTRAL SPECIES	1	ENSGT00940000155157	ENSGT00940000161718	ENSGT00940000157052	ENSGT00390000011476	ENSGT00500000044926	ENSGT00940000155447	ENSGT00390000004068	ENSGT00940000158288 #9	ENSGT00940000156602 #10	ENSGT00390000017265 #11	ENSGT00940000155996 #12	ENSGT00940000159204 #13	ENSGT00940000154962.B	ENSGT00940000161426 #19	ENSGT00940000160702.b #20	ENSGT00940000153430.a.b #22	ENSGT00990000212952	ENSGT00940000168868	ENSGT00940000164222	ENSGT00730000111063 #24	ENSGT00950000183135.B.b	ENSGT00390000000403 #26	ENSGT00940000162008 #27	ENSGT00940000164128.a	ENSGT00390000008978 #28	ENSGT00940000158482 #29	ENSGT00940000157425.B #31	ENSGT00390000017746 #32	ENSGT00940000157593 #33	ENSGT00940000166380	ENSGT00940000161152 #35
Eastern brown snake	MODERN SPECIES	25	PLEKHA1 (ENSPTXG00000011895)	BTBD16 (ENSPTXG00000011894)	ENSPTXG00000011893	NSMCE4A (ENSPTXG00000011892)	ATE1 (ENSPTXG00000011891)	FGFR2 (ENSPTXG00000011890)	WDR11 (ENSPTXG00000011888)	PLPP4 (ENSPTXG00000011887) #9	SEC23IP (ENSPTXG00000011814) #10	MCMBP (ENSPTXG00000011480) #11	INPP5F (ENSPTXG00000011471) #12	BAG3 (ENSPTXG00000011470) #13	ENSPTXG00000011468	RGS10 (ENSPTXG00000011466) #19	GRK5 (ENSPTXG00000011455) #20	PRDX3 (ENSPTXG00000011454) #22	ENSPTXG00000011452	ENSPTXG00000011451	EIF3A (ENSPTXG00000011448) #24	NANOS1 (ENSPTXG00000011447)	CACUL1 (ENSPTXG00000011446) #26	PRLHR (ENSPTXG00000011444) #27	ENSPTXG00000011443	FAM204A (ENSPTXG00000011412) #28	ENSPTXG00000011411	RAB11FIP2 (ENSPTXG00000011410) #29	EMX2 (ENSPTXG00000011409) #31	PDZD8 (ENSPTXG00000011408) #32	SLC18A2 (ENSPTXG00000011407) #33	ENSPTXG00000003896	VAX1 (ENSPTXG00000003895) #35
Mainland tiger snake	MODERN SPECIES		ENSNSUG00000001053	NSMCE4A (ENSNSUG00000001055)	ATE1 (ENSNSUG00000001059)	FGFR2 (ENSNSUG00000001069)	WDR11 (ENSNSUG00000001076)	ENSNSUG00000001085	PLPP4 (ENSNSUG00000001090) #9	ENSNSUG00000001093	SEC23IP (ENSNSUG00000001094) #10	MCMBP (ENSNSUG00000001099) #11	INPP5F (ENSNSUG00000001107) #12	BAG3 (ENSNSUG00000001865) #13	ENSNSUG00000001866	RGS10 (ENSNSUG00000001871) #19	GRK5 (ENSNSUG00000001907) #20	PRDX3 (ENSNSUG00000002052) #22	ENSNSUG00000002054	ENSNSUG00000002056	ENSNSUG00000002060	EIF3A (ENSNSUG00000002061) #24	NANOS1 (ENSNSUG00000002068)	CACUL1 (ENSNSUG00000002070) #26	PRLHR (ENSNSUG00000002071) #27	ENSNSUG00000002074	FAM204A (ENSNSUG00000002075) #28	RAB11FIP2 (ENSNSUG00000002106) #29	EMX2 (ENSNSUG00000002110) #31	PDZD8 (ENSNSUG00000002119) #32	SLC18A2 (ENSNSUG00000002122) #33	ENSNSUG00000002140	VAX1 (ENSNSUG00000002145) #35
Blue-lipped sea krait	MODERN SPECIES	57																PRDX3 (ENSLLTG00000006322) #22	SFXN4 (ENSLLTG00000006331) #21	ENSLLTG00000006341	EIF3A (ENSLLTG00000006461) #24	NANOS1 (ENSLLTG00000011369)
Indian cobra	MODERN SPECIES	3	PLEKHA1 (ENSNNAG00000004758)	BTBD16 (ENSNNAG00000004840)	TACC2 (ENSNNAG00000004956)	ENSNNAG00000005253	ATE1 (ENSNNAG00000005291)	FGFR2 (ENSNNAG00000005354)	WDR11 (ENSNNAG00000005498)	PLPP4 (ENSNNAG00000005540) #9	SEC23IP (ENSNNAG00000005588) #10	MCMBP (ENSNNAG00000005668) #11	INPP5F (ENSNNAG00000005737) #12	BAG3 (ENSNNAG00000005857) #13	ENSNNAG00000005871	RGS10 (ENSNNAG00000005939) #19	GRK5 (ENSNNAG00000005954) #20	PRDX3 (ENSNNAG00000006010) #22	ENSNNAG00000006052 #21	ENSNNAG00000006074	EIF3A (ENSNNAG00000006102) #24	NANOS1 (ENSNNAG00000006194)	CACUL1 (ENSNNAG00000006225) #26	PRLHR (ENSNNAG00000006262) #27	ENSNNAG00000006264	FAM204A (ENSNNAG00000006282) #28	RAB11FIP2 (ENSNNAG00000006294) #29	ENSNNAG00000006305	EMX2 (ENSNNAG00000006312) #31	PDZD8 (ENSNNAG00000006337) #32	ENSNNAG00000006354	SLC18A2 (ENSNNAG00000006365) #33	ENSNNAG00000006416
Lizard	MODERN SPECIES	1012												ENSACAG00000041317	ENSACAG00000028667	ENSACAG00000038238	GRK5 (ENSACAG00000016904) #20	PRDX3 (ENSACAG00000045011) #22	SFXN4 (ENSACAG00000016888) #21	EIF3A (ENSACAG00000016784) #24	NANOS1 (ENSACAG00000027867)	ENSACAG00000034757	ENSACAG00000040497	CACUL1 (ENSACAG00000045158) #26
tuatara	MODERN SPECIES	1076					PLPP4 (ENSSPUG00000002589) #9	ENSSPUG00000002567	ENSSPUG00000002547 #10	ENSSPUG00000002532 #10	MCMBP (ENSSPUG00000002507) #11	ENSSPUG00000002497	ENSSPUG00000002438 #12	ENSSPUG00000002428 #13	TIAL1 (ENSSPUG00000002412) #16	ENSSPUG00000002373	GRK5 (ENSSPUG00000002329) #20	PRDX3 (ENSSPUG00000002313) #22	ENSSPUG00000002301 #21	ENSSPUG00000002293	NANOS1 (ENSSPUG00000002169)	CACUL1 (ENSSPUG00000002151) #26	ENSSPUG00000002130	FAM204A (ENSSPUG00000002122) #28	RAB11FIP2 (ENSSPUG00000002112) #29	EMX2 (ENSSPUG00000002100) #31	PDZD8 (ENSSPUG00000002095) #32	SLC18A2 (ENSSPUG00000002088) #33	VAX1 (ENSSPUG00000002073) #35	SHTN1 (ENSSPUG00000002048) #37	ENO4 (ENSSPUG00000002021)	HSPA12A (ENSSPUG00000001968)	PNLIPRP2 (ENSSPUG00000001813)
Anura	ANCESTRAL SPECIES																	ENSGT00940000153430.a.b #22
Leishan spiny toad	MODERN SPECIES	9	ENSLLEG00000025943	ENSLLEG00000025200	ENSLLEG00000025109 #10	ENSLLEG00000025080	INPP5F (ENSLLEG00000024859) #12	ENSLLEG00000024822	ENSLLEG00000024791	ENSLLEG00000024683	ENSLLEG00000024666	ENSLLEG00000024598 #19	ENSLLEG00000024575	ENSLLEG00000024559	HSPA12A (ENSLLEG00000023942)	ENSLLEG00000023845	ENSLLEG00000023818	ENSLLEG00000023739 #22	ENSLLEG00000023725	EIF3A (ENSLLEG00000022347) #24	ENSLLEG00000022242	CACUL1 (ENSLLEG00000022078) #26	ENSLLEG00000022004	ENSLLEG00000021979	ENSLLEG00000021969	ENSLLEG00000021943	ENSLLEG00000021815 #28	ENSLLEG00000021789	ENSLLEG00000021765	ENSLLEG00000021752	ENSLLEG00000021677	SHTN1 (ENSLLEG00000020782) #37	ENSLLEG00000020520
Coelacanth	MODERN SPECIES	729									SEC23IP (ENSLACG00000007486) #10	MCMBP (ENSLACG00000008760) #11	INPP5F (ENSLACG00000022273) #12	BAG3 (ENSLACG00000011309) #13	TIAL1 (ENSLACG00000011749) #16	RGS10 (ENSLACG00000012231) #19	GRK5 (ENSLACG00000013521) #20	PRDX3 (ENSLACG00000014651) #22	SFXN4 (ENSLACG00000014747) #21	dennd10 (ENSLACG00000014839)	EIF3A (ENSLACG00000014932) #24	NANOS1 (ENSLACG00000015195)
Actinopterygii	ANCESTRAL SPECIES	113	ENSGT00390000010398.A	ENSGT00940000157052	ENSGT00390000011476	ENSGT00500000044926	ENSGT00940000155447	ENSGT00390000004068	ENSGT00940000158288 #9	ENSGT00940000156602 #10	ENSGT00390000017265 #11	ENSGT00940000155996 #12	ENSGT00940000159204 #13	ENSGT00940000160482 #16	ENSGT00940000154962.B	ENSGT00940000161426 #19	ENSGT00940000160702 #20	ENSGT00940000153430.a.b #22	ENSGT01030000234641.a.b #21	ENSGT00940000164222	ENSGT00730000111063 #24	ENSGT00950000183135.B.b	ENSGT00390000000403 #26	ENSGT00940000164128.a	ENSGT00390000008978 #28	ENSGT00940000158482 #29	ENSGT00940000157425.B #31	ENSGT00390000017746 #32	ENSGT00940000157593 #33	ENSGT00700000104522 #34	ENSGT00940000161152 #35	ENSGT00940000155068.a.b	ENSGT00510000048167.a #37
Neopterygii	ANCESTRAL SPECIES	72																ENSGT00940000153430.a.b #22	ENSGT01030000234641.a.b #21	ENSGT00940000164222	ENSGT00730000111063 #24	ENSGT00950000183135.B.b	ENSGT00390000000403 #26	ENSGT00940000164128.a	ENSGT00390000008978 #28	ENSGT00940000158482 #29	ENSGT00940000157425.B #31	ENSGT00390000017746 #32	ENSGT00940000157593 #33	ENSGT00700000104522 #34	ENSGT00940000161152 #35	ENSGT00940000155068.a.b	ENSGT00510000048167.a #37
Osteoglossocephalai	ANCESTRAL SPECIES	871																ENSGT00940000153430.a.b #22	ENSGT00940000155493
Clupeocephala	ANCESTRAL SPECIES	135	ENSGT00390000007221.a.b	ENSGT00390000000046	ENSGT00940000163077	ENSGT00940000155525	ENSGT00940000176198	ENSGT00940000158658	ENSGT00900000142007	ENSGT00390000008787.b	ENSGT00390000008978 #28	ENSGT00940000158482 #29	ENSGT00940000157425.B #31	ENSGT00730000111063 #24	ENSGT00940000173319	ENSGT00940000164222	ENSGT01030000234641.a.b #21	ENSGT00940000153430.a.b #22	ENSGT00940000155493	ENSGT00940000165086.b
Otomorpha	ANCESTRAL SPECIES	465									ENSGT00390000008978 #28	ENSGT00940000158482 #29	ENSGT00940000157425.B #31	ENSGT00730000111063 #24	ENSGT00940000173319	ENSGT00940000164222	ENSGT01030000234641.a.b #21	ENSGT00940000153430.a.b #22	ENSGT00940000155493	ENSGT00940000165086.b
Otophysi	ANCESTRAL SPECIES	301		ENSGT00940000154537.lb	ENSGT00940000159235	ENSGT00940000159732.b	ENSGT00940000156754.a.b.a	ENSGT00610000086460	ENSGT00390000005203	ENSGT00940000155560.l	ENSGT00940000165556.a.a	ENSGT00390000008978 #28	ENSGT00940000158482 #29	ENSGT00940000157425.B #31	ENSGT00730000111063 #24	ENSGT00940000164222	ENSGT01030000234641.a.b #21	ENSGT00940000153430.a.b #22	ENSGT00940000155493	ENSGT00940000165086.b
Characiphysae	ANCESTRAL SPECIES	9	ENSGT00940000160175.b	ENSGT00390000011408	ENSGT00940000165215.a	ENSGT00940000165215.b	ENSGT00940000164759	ENSGT00940000158584	ENSGT00940000155715	ENSGT00940000175397	ENSGT00940000156981	ENSGT00940000157500	ENSGT00940000158949	ENSGT00390000009948.c	ENSGT00940000155780	ENSGT00940000164222	ENSGT01030000234641.a.b #21	ENSGT00940000153430.a.b #22	ENSGT00940000155493	ENSGT00940000165086.b	ENSGT00950000183132.B	ENSGT00390000003094	ENSGT00950000183037.B.a	ENSGT00950000182992.a.b.a.a	ENSGT00940000157736	ENSGT01100000263502.A.a.b	ENSGT00390000000747	ENSGT00390000017595	ENSGT00780000122010	ENSGT00940000167706	ENSGT00500000044923	ENSGT00730000112146	ENSGT00570000079168.b.b.a.c
Channel catfish	MODERN SPECIES	22	ENSIPUG00000018998	adgra1 (ENSIPUG00000018953)	kndc1 (ENSIPUG00000018902)	ventx (ENSIPUG00000018889)	HS3ST1 (ENSIPUG00000018884)	dntt (ENSIPUG00000018851)	ENSIPUG00000018799	znf518a (ENSIPUG00000018787)	ccnj (ENSIPUG00000018774)	BTAF1 (ENSIPUG00000018620)	cpeb3 (ENSIPUG00000018571)	march5 (ENSIPUG00000018537)	ide (ENSIPUG00000018484)	fam45a (ENSIPUG00000018453)	sfxn4 (ENSIPUG00000018396) #21	prdx3 (ENSIPUG00000018339) #22	tm9sf3 (ENSIPUG00000018300)	abhd12 (ENSIPUG00000018259)	ENSIPUG00000018232	polr1b (ENSIPUG00000018216)	nanp (ENSIPUG00000018213)	cyp1b (ENSIPUG00000018193)	rmdn2 (ENSIPUG00000018123)	ENSIPUG00000018107	Cdc42ep3 (ENSIPUG00000018101)	opn3 (ENSIPUG00000018078)	kmo (ENSIPUG00000018014)	ENSIPUG00000017987	dna2 (ENSIPUG00000017938)	ENSIPUG00000017907	mtg1 (ENSIPUG00000017854)
Characiphysae_b	ANCESTRAL SPECIES	29	ENSGT00940000160175.b	ENSGT00390000011408	ENSGT00940000165215.a	ENSGT00940000165215.b	ENSGT00940000164759	ENSGT00940000158584	ENSGT00940000155715	ENSGT00940000175397	ENSGT00940000156981	ENSGT00940000157500	ENSGT00940000158949	ENSGT00390000009948.c	ENSGT00940000155780	ENSGT00940000164222	ENSGT01030000234641.a.b #21	ENSGT00940000153430.a.b #22	ENSGT00940000155493	ENSGT00940000165086.b	ENSGT00950000183132.B	ENSGT00390000003094	ENSGT00950000183037.B.a	ENSGT00950000182992.a.b.a.a	ENSGT00940000157736	ENSGT01100000263502.A.a.b	ENSGT00390000000747	ENSGT00390000017595	ENSGT00780000122010	ENSGT00940000167706	ENSGT00500000044923	ENSGT00730000112146	ENSGT00570000079168.b.b.a.c
Characoidei	ANCESTRAL SPECIES	19	ENSGT00940000160175.b	ENSGT00390000011408	ENSGT00940000165215.a	ENSGT00940000165215.b	ENSGT00940000164759	ENSGT00940000158584	ENSGT00940000155715	ENSGT00940000175397	ENSGT00940000156981	ENSGT00940000157500	ENSGT00940000158949	ENSGT00390000009948.c	ENSGT00940000155780	ENSGT00940000164222	ENSGT01030000234641.a.b #21	ENSGT00940000153430.a.b #22	ENSGT00940000155493	ENSGT00940000165086.b	ENSGT00950000183132.B	ENSGT00390000003094	ENSGT00950000183037.B.a	ENSGT00950000182992.a.b.a.a	ENSGT00940000157736	ENSGT01100000263502.A.a.b	ENSGT00390000000747	ENSGT00390000017595.cb.a	ENSGT00390000017595.cb.b	ENSGT00780000122010	ENSGT00980000198624	ENSGT00940000167706	ENSGT00500000044923
Red-bellied piranha	MODERN SPECIES	45	ENSPNAG00000012411	KNDC1 (ENSPNAG00000002210)	vox (ENSPNAG00000002188)	ENSPNAG00000012311	ENSPNAG00000012296	dntt (ENSPNAG00000012283)	blnk (ENSPNAG00000012255)	ENSPNAG00000002160	CCNJ (ENSPNAG00000002156)	BTAF1 (ENSPNAG00000012196)	cpeb3 (ENSPNAG00000012111)	marchf5 (ENSPNAG00000012019)	ide (ENSPNAG00000011967)	dennd10 (ENSPNAG00000001990)	sfxn4 (ENSPNAG00000007203) #21	prdx3 (ENSPNAG00000001945) #22	tm9sf3 (ENSPNAG00000011786)	ENSPNAG00000011773
Mexicana tetra	MODERN SPECIES	17	vox (ENSAMXG00000043152)	ENSAMXG00000041873	ENSAMXG00000026271	ENSAMXG00000029798	dntt (ENSAMXG00000014498)	ENSAMXG00000030667	blnk (ENSAMXG00000036437)	ENSAMXG00000014460	CCNJ (ENSAMXG00000014450)	BTAF1 (ENSAMXG00000014437)	cpeb3 (ENSAMXG00000014427)	marchf5 (ENSAMXG00000034426)	ide (ENSAMXG00000020813)	dennd10 (ENSAMXG00000020827)	sfxn4 (ENSAMXG00000038797) #21	prdx3 (ENSAMXG00000020857) #22	tm9sf3 (ENSAMXG00000020874)	ENSAMXG00000038796	ENSAMXG00000020884	polr1b (ENSAMXG00000037818)	nanp (ENSAMXG00000041071)	cyp1b1 (ENSAMXG00000032772)	ENSAMXG00000036328	cdc42ep3 (ENSAMXG00000025311)	opn3 (ENSAMXG00000020951)	kmo (ENSAMXG00000020965)	ENSAMXG00000020982	ENSAMXG00000042131	DNA2 (ENSAMXG00000021028)	ENSAMXG00000038249	ENSAMXG00000021070
Electric eel	MODERN SPECIES	215	ADGRA1 (ENSEEEG00000006379)	ENSEEEG00000006377	ENSEEEG00000006373	vox (ENSEEEG00000006371)	ENSEEEG00000006369	ENSEEEG00000006367	dntt (ENSEEEG00000006348)	blnk (ENSEEEG00000006344)	CCNJ (ENSEEEG00000006331)	BTAF1 (ENSEEEG00000005657)	cpeb3 (ENSEEEG00000005599)	marchf5 (ENSEEEG00000005586)	ide (ENSEEEG00000005006)	dennd10 (ENSEEEG00000004967)	sfxn4 (ENSEEEG00000004963) #21	prdx3 (ENSEEEG00000004960) #22	tm9sf3 (ENSEEEG00000004753)	si:ch211-117n7.7 (ENSEEEG00000004730)	polr1b (ENSEEEG00000004702)	nanp (ENSEEEG00000004697)	cyp1b1 (ENSEEEG00000004661)	ENSEEEG00000004655	cdc42ep3 (ENSEEEG00000004654)	opn3 (ENSEEEG00000004651)	kmo (ENSEEEG00000004650)	pbld (ENSEEEG00000004649)	DNA2 (ENSEEEG00000004648)	ENSEEEG00000004647	mtg1 (ENSEEEG00000004646)	ENSEEEG00000004645	ENSEEEG00000004644
Cyprinoidei	ANCESTRAL SPECIES	5	ENSGT00940000159235	ENSGT00940000159732.b	ENSGT00940000156754.a.b.a	ENSGT00610000086460	ENSGT00390000005203	ENSGT00940000155560.l.a	ENSGT01100000263515.a.b.a.b.b.k.b.a.b	ENSGT00940000157814	ENSGT00940000165556.a.a	ENSGT00390000008978 #28	ENSGT00940000158482 #29	ENSGT00940000157425.B #31	ENSGT00730000111063.b #24	ENSGT00940000164222	ENSGT01030000234641.a.b #21	ENSGT00940000153430.a.b #22	ENSGT00940000155493	ENSGT00940000165086.b	ENSGT00510000047850.e	ENSGT00510000047850.f	ENSGT00940000158292.a.b	ENSGT00940000160346.B.f	ENSGT00390000002168	ENSGT00530000063426.a	ENSGT00940000158103	ENSGT00940000156070.a.a	ENSGT00960000186682	ENSGT00940000159739	ENSGT00940000157985	ENSGT00390000010498	ENSGT00940000155103.a.a
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	779										ENSGT00940000157814.x.a.b	ENSGT00390000008978.bb #28	ENSGT00940000158482.c #29	ENSGT00730000111063.b.b #24	ENSGT00940000164222.a	ENSGT01030000234641.a.b.b #21	ENSGT00940000153430.a.b.a #22	ENSGT00940000155493.j	ENSGT00940000165086.b.h
Goldfish	MODERN SPECIES	4	SGPP2 (ENSCARG00000017193)	farsb (ENSCARG00000017236)	scaf4b (ENSCARG00000017368)	TIAM1 (ENSCARG00000017412)	ENSCARG00000017564	cldn8.2 (ENSCARG00000017570)	ENSCARG00000017586	GRIK1 (ENSCARG00000017618)	ENSCARG00000017714	ENSCARG00000017745	fam204a (ENSCARG00000017777) #28	RAB11FIP2 (ENSCARG00000017784) #29	eif3s10 (ENSCARG00000017941) #24	dennd10 (ENSCARG00000020829)	sfxn4 (ENSCARG00000020880) #21	prdx3 (ENSCARG00000020898) #22	tm9sf3 (ENSCARG00000020942)	ENSCARG00000022017	ENSCARG00000022140	gfra4a (ENSCARG00000022150)	ATRN (ENSCARG00000022213)	EIF2AK3 (ENSCARG00000022703)	rpia (ENSCARG00000023521)	slc4a11 (ENSCARG00000023598)	ap5s1 (ENSCARG00000023728)	CDC25B (ENSCARG00000023741)	noto (ENSCARG00000023787)	emx1 (ENSCARG00000023799)	sfxn5a (ENSCARG00000023819) ##21	ENSCARG00000023894	ENSCARG00000023904
Cyprininae_a	ANCESTRAL SPECIES	171									ENSGT00940000157814.x.a.b	ENSGT00390000008978.bb #28	ENSGT00940000158482.c #29	ENSGT00940000157425.B.b #31	ENSGT00730000111063.b.b #24	ENSGT00940000164222.a	ENSGT01030000234641.a.b.b #21	ENSGT00940000153430.a.b.a #22	ENSGT00940000155493.j	ENSGT00940000165086.b.g.a	ENSGT00510000047850.f.b	ENSGT00940000158292.a.b.a	ENSGT00940000160346.B.f.b	ENSGT00390000002168.b	ENSGT00530000063426.a.c.a	ENSGT00940000156070.a.a.i	ENSGT00960000186682.h	ENSGT00940000159739.a.a	ENSGT00940000157985.a	ENSGT00390000010498	ENSGT00940000155103.a.a.c	ENSGT00940000164292.a.b	ENSGT00940000157060.c
Golden-line barbel	MODERN SPECIES	67										ENSSGRG00000026220	fam204a (ENSSGRG00000026218) #28	RAB11FIP2 (ENSSGRG00000026217) #29	emx2 (ENSSGRG00000026216) #31	eif3s10 (ENSSGRG00000026147) #24	dennd10 (ENSSGRG00000026128)	prdx3 (ENSSGRG00000026126) #22	tm9sf3 (ENSSGRG00000025864)	si:ch211-117n7.7 (ENSSGRG00000025851)	SRBD1 (ENSSGRG00000025279)	six2a (ENSSGRG00000025278)	ENSSGRG00000025276	ENSSGRG00000025275	ENSSGRG00000025274	six3a (ENSSGRG00000025273)	CAMKMT (ENSSGRG00000025270)	ENSSGRG00000025268	ppm1ba (ENSSGRG00000025266)	LRPPRC (ENSSGRG00000024832)	abcg5 (ENSSGRG00000024827)	dync2li1 (ENSSGRG00000024718)	ENSSGRG00000024712
Common carp reference	MODERN SPECIES	18	ENSCCRG00000065200	ENSCCRG00000079502	ENSCCRG00000058829	ENSCCRG00000013526	ENSCCRG00000038526	ENSCCRG00000014373	ENSCCRG00000081583	ENSCCRG00000053046	ENSCCRG00000045633	fam204a (ENSCCRG00000080309) #28	ENSCCRG00000057436 #29	emx2 (ENSCCRG00000064661) #31	eif3s10 (ENSCCRG00000051850) #24	dennd10 (ENSCCRG00000051871)	sfxn4 (ENSCCRG00000078886) #21	prdx3 (ENSCCRG00000062141) #22	tm9sf3 (ENSCCRG00000026394)	ENSCCRG00000051884	ENSCCRG00000035077	ENSCCRG00000061795	ENSCCRG00000056185	six2a (ENSCCRG00000049667)	six3a (ENSCCRG00000070032)	CAMKMT (ENSCCRG00000007152)	prepl (ENSCCRG00000032376)	ppm1ba (ENSCCRG00000032362)	LRPPRC (ENSCCRG00000079926)	abcg8 (ENSCCRG00000003358)	abcg5 (ENSCCRG00000003387)	dync2li1 (ENSCCRG00000004034)	ENSCCRG00000004047
Cyprininae	ANCESTRAL SPECIES	62	ENSGT00940000159732.b.b	ENSGT00940000156754.a.b.a.b	ENSGT00610000086460	ENSGT00390000005203	ENSGT00940000155560.l.a.a	ENSGT01100000263515.a.b.a.b.b.k.b.a.b.d	ENSGT00940000155790.d	ENSGT00940000157814.x.b	ENSGT00940000165556.a.a	ENSGT00390000008978.cb #28	ENSGT00940000158482.d #29	ENSGT00940000157425.B #31	ENSGT00730000111063.b.a #24	ENSGT00940000164222.b	ENSGT01030000234641.a.b.a #21	ENSGT00940000153430.a.b.b #22	ENSGT00940000155493.i	ENSGT00940000165086.b.g.b	ENSGT00510000047850.f.a	ENSGT00940000158292.a.b.b.a.a	ENSGT00940000160346.B.f.a	ENSGT00390000002168.a	ENSGT00530000063426.a.d	ENSGT00940000158103	ENSGT00940000156070.a.a.j	ENSGT00960000186682.g	ENSGT00940000159739.b	ENSGT00940000157985.b	ENSGT00940000155103.a.a.d	ENSGT00940000164292.a.a	ENSGT00940000157060.d
Goldfish	DUPLICATION
Goldfish	MODERN SPECIES	31	SEMA4G (ENSCARG00000024580)	ENSCARG00000024538	hk1 (ENSCARG00000024100)	tacr2 (ENSCARG00000024065)	tspan15 (ENSCARG00000024027)	GFRA1 (ENSCARG00000023905)	apcs (ENSCARG00000023890)	ATRNL1 (ENSCARG00000023570)	ENSCARG00000023475	ENSCARG00000023470	fam204a (ENSCARG00000023465) #28	RAB11FIP2 (ENSCARG00000023456) #29	eif3s10 (ENSCARG00000023366) #24	dennd10 (ENSCARG00000023306)	sfxn4 (ENSCARG00000023240) #21	prdx3 (ENSCARG00000023198) #22	tm9sf3 (ENSCARG00000022629)	ENSCARG00000022582	SRBD1 (ENSCARG00000022306)	six2a (ENSCARG00000022266)	six3a (ENSCARG00000022254)	CAMKMT (ENSCARG00000022218)	SLC3A1 (ENSCARG00000022161)	ppm1ba (ENSCARG00000022139)	LRPPRC (ENSCARG00000016911)	ENSCARG00000016703	sdccag8 (ENSCARG00000016636)	akt3a (ENSCARG00000014112)	zbtb18 (ENSCARG00000013997)	adss2 (ENSCARG00000013162)	CATSPERE (ENSCARG00000013133)
Goldfish	MODERN SPECIES	2692													EIF3A (ENSCARG00000069758) #24	dennd10 (ENSCARG00000069763)	sfxn4 (ENSCARG00000069766) #21	prdx3 (ENSCARG00000069767) #22	tm9sf3 (ENSCARG00000069776)	ENSCARG00000069807	SRBD1 (ENSCARG00000069818)
Cyprininae_a	ANCESTRAL SPECIES	32	ENSGT00940000156754.a.b.a.a.d	ENSGT00940000156754.a.b.a.b	ENSGT00610000086460	ENSGT00390000005203	ENSGT00940000155560.l.a.a	ENSGT01100000263515.a.b.a.b.b.k.b.a.b.d	ENSGT00940000155790.d	ENSGT00940000157814.x.b	ENSGT00940000165556.a.a	ENSGT00390000008978.cb #28	ENSGT00940000158482.d #29	ENSGT00940000157425.B.a #31	ENSGT00730000111063.b.a #24	ENSGT00940000164222.b	ENSGT01030000234641.a.b.a #21	ENSGT00940000153430.a.b.b #22	ENSGT00940000155493.i	ENSGT00940000165086.b.g.b	ENSGT00510000047850.f.a	ENSGT00940000158292.a.b.b.a.a	ENSGT00940000160346.B.f.a	ENSGT00390000002168.a	ENSGT00530000063426.a.d	ENSGT00940000158103	ENSGT00940000156070.a.a.j	ENSGT00960000186682.g	ENSGT00940000159739.b	ENSGT00940000157985.b	ENSGT00940000155103.a.a.d	ENSGT00940000164292.a.a	ENSGT00940000157060.d
Common carp reference	MODERN SPECIES	48	ENSCCRG00000076307	ENSCCRG00000080747	si:ch1073-126c3.2 (ENSCCRG00000078682)	CCDC172 (ENSCCRG00000011866)	GFRA1 (ENSCCRG00000014326)	apcs (ENSCCRG00000041681)	ATRNL1 (ENSCCRG00000030528)	ENSCCRG00000011525	ENSCCRG00000082057	fam204a (ENSCCRG00000076067) #28	ENSCCRG00000072504 #29	emx2 (ENSCCRG00000070882) #31	eif3s10 (ENSCCRG00000034932) #24	dennd10 (ENSCCRG00000026313)	sfxn4 (ENSCCRG00000026322) #21	prdx3 (ENSCCRG00000072654) #22	tm9sf3 (ENSCCRG00000051877)	ENSCCRG00000026483	SRBD1 (ENSCCRG00000080746)	six2a (ENSCCRG00000056976)	six3a (ENSCCRG00000074911)	CAMKMT (ENSCCRG00000081834)	prepl (ENSCCRG00000072705)	SLC3A1 (ENSCCRG00000074378)	ppm1ba (ENSCCRG00000007146)	LRPPRC (ENSCCRG00000042706)	abcg8 (ENSCCRG00000042677)	abcg5 (ENSCCRG00000022912)	ENSCCRG00000022865	sdccag8 (ENSCCRG00000042665)	akt3a (ENSCCRG00000039019)
Golden-line barbel	MODERN SPECIES	327								ATRNL1 (ENSSGRG00000013099)	ENSSGRG00000013555	fam204a (ENSSGRG00000013557) #28	RAB11FIP2 (ENSSGRG00000013558) #29	emx2 (ENSSGRG00000013559) #31	eif3s10 (ENSSGRG00000013560) #24	dennd10 (ENSSGRG00000013563)	sfxn4 (ENSSGRG00000013569) #21	prdx3 (ENSSGRG00000013574) #22	tm9sf3 (ENSSGRG00000013616)	SRBD1 (ENSSGRG00000013822)	six2a (ENSSGRG00000013823)	six3a (ENSSGRG00000013824)	CAMKMT (ENSSGRG00000013827)	prepl (ENSSGRG00000013828)	SLC3A1 (ENSSGRG00000013829)	ENSSGRG00000013830	ppm1ba (ENSSGRG00000013831)
Zebrafish	MODERN SPECIES	4	ENSDARG00000111230	HTRA2 (ENSDARG00000076713)	ENSDARG00000092317	HTRA2 (ENSDARG00000115106)	ENSDARG00000112706	HTRA2 (ENSDARG00000111633)	ENSDARG00000116065	ENSDARG00000110600	pomk (ENSDARG00000003208)	wdr32 (ENSDARG00000029600)	CPXM1 (ENSDARG00000073716)	ENSDARG00000003328	SEMA4G (ENSDARG00000076595)	dennd10 (ENSDARG00000062965)	sfxn4 (ENSDARG00000069832) #21	prdx3 (ENSDARG00000032102) #22	tm9sf3 (ENSDARG00000028748)	si:ch211-117n7.7 (ENSDARG00000069828)	ENSDARG00000092071	SRBD1 (ENSDARG00000092855)	ENSDARG00000079827	six2a (ENSDARG00000058004)	six3a (ENSDARG00000058008)	CAMKMT (ENSDARG00000095224)	ENSDARG00000091900	prepl (ENSDARG00000017853)	SLC3A1 (ENSDARG00000017165)	ppm1ba (ENSDARG00000001888)	lrpprc (ENSDARG00000043970)	abcg8 (ENSDARG00000063059)	abcg5 (ENSDARG00000063078)
Clupeiformes	ANCESTRAL SPECIES	470										ENSGT00390000008978 #28	ENSGT00940000158482 #29	ENSGT00940000157425.B #31	ENSGT00730000111063 #24	ENSGT00940000173319	ENSGT00940000164222	ENSGT00940000153430.a.b #22	ENSGT00940000155493	ENSGT00940000165086.b
Atlantic herring	MODERN SPECIES	4	six2a (ENSCHAG00000018739)	ENSCHAG00000018697	ENSCHAG00000018672	ENSCHAG00000018649	ENSCHAG00000018307	STK32C (ENSCHAG00000018261)	ENSCHAG00000018217	ENSCHAG00000018160	ENSCHAG00000018147	ENSCHAG00000018137	ENSCHAG00000018063	ENSCHAG00000018040	RAB11FIP2 (ENSCHAG00000018031) #29	emx2 (ENSCHAG00000018010) #31	eif3s10 (ENSCHAG00000016705) #24	prdx3 (ENSCHAG00000016673) #22	tm9sf3 (ENSCHAG00000015327)	BFSP1 (ENSCHAG00000015254)	pcsk2 (ENSCHAG00000014907)	OTOR (ENSCHAG00000014875)	GTPBP2 (ENSCHAG00000014702)	ENSCHAG00000014670	polh (ENSCHAG00000014604)	zgc:113274 (ENSCHAG00000014589)	tp53bp2a (ENSCHAG00000013922)	ENSCHAG00000013900	XPO5 (ENSCHAG00000013675)	EFEMP1 (ENSCHAG00000013447)	MARK1 (ENSCHAG00000011306)	lgi1a (ENSCHAG00000011188)	ENSCHAG00000009056
Denticle herring	MODERN SPECIES	18	ccdc6a (ENSDCDG00000029409)	slc16a9a (ENSDCDG00000029410)	ENSDCDG00000029413	BICC1 (ENSDCDG00000029416)	rtkn2 (ENSDCDG00000029419)	ZNF365 (ENSDCDG00000029445)	chmp2a (ENSDCDG00000029448)	DNAAF10 (ENSDCDG00000029450)	actn2b (ENSDCDG00000029474)	tha1 (ENSDCDG00000030013)	socs3b (ENSDCDG00000030015)	PGS1 (ENSDCDG00000030018)	eif3s10 (ENSDCDG00000030024) #24	ENSDCDG00000030042	dennd10 (ENSDCDG00000030044)	prdx3 (ENSDCDG00000030045) #22	tm9sf3 (ENSDCDG00000030048)	si:ch211-117n7.7 (ENSDCDG00000030059)	EGR2 (ENSDCDG00000030061)	adob (ENSDCDG00000030062)	FAM98A (ENSDCDG00000030067)	rasgrp3 (ENSDCDG00000030143)	LTBP1 (ENSDCDG00000030298)	ttc27 (ENSDCDG00000032021)	BIRC6 (ENSDCDG00000032358)	ENSDCDG00000032467	yipf4 (ENSDCDG00000032472)	nvl (ENSDCDG00000032480)	degs1 (ENSDCDG00000032498)	fbxo28 (ENSDCDG00000032501)	exo1 (ENSDCDG00000032504)
Euteleosteomorpha	ANCESTRAL SPECIES	33	ENSGT00390000007221.a.b	ENSGT00390000000046	ENSGT00940000163077	ENSGT00940000155525	ENSGT00900000142007	ENSGT00940000158658	ENSGT00940000176198	ENSGT00390000008787.b	ENSGT00390000008978 #28	ENSGT00940000158482 #29	ENSGT00940000157425.B #31	ENSGT00730000111063 #24	ENSGT00940000173319	ENSGT00940000164222	ENSGT01030000234641.a.b #21	ENSGT00940000153430.a.b #22	ENSGT00940000155493	ENSGT00940000165086.b	ENSGT00940000157051	ENSGT00940000162185	ENSGT00940000162768.A	ENSGT00720000108792.A	ENSGT00940000175717	ENSGT00940000162844	ENSGT00940000156782.c	ENSGT00940000161552	ENSGT00940000161907	ENSGT00950000183132.B	ENSGT00390000003094	ENSGT00950000183037.B.a	ENSGT00950000182992.a.b.a.a
Acanthomorphata	ANCESTRAL SPECIES	45	ENSGT00390000007221.a.b	ENSGT00390000000046	ENSGT00940000163077	ENSGT00940000155525	ENSGT00900000142007	ENSGT00940000158658	ENSGT00940000176198	ENSGT00390000008787.b	ENSGT00390000008978 #28	ENSGT00940000158482 #29	ENSGT00940000157425.B #31	ENSGT00730000111063 #24	ENSGT00940000173319	ENSGT00940000164222	ENSGT01030000234641.a.b #21	ENSGT00940000153430.a.b #22	ENSGT00940000155493	ENSGT00940000165086.b	ENSGT00940000157051	ENSGT00940000162185	ENSGT00940000162768.A	ENSGT00720000108792.A	ENSGT00940000175717	ENSGT00940000162844	ENSGT00940000156782.c	ENSGT00940000161552	ENSGT00940000161907	ENSGT00950000183132.B	ENSGT00390000003094	ENSGT00950000183037.B.a	ENSGT00950000182992.a.b.a.a
Euacanthomorphacea	ANCESTRAL SPECIES	32	ENSGT00390000007221.a.b	ENSGT00390000000046	ENSGT00940000163077	ENSGT00940000155525	ENSGT00940000176198	ENSGT00940000158658	ENSGT00900000142007	ENSGT00390000008787.b	ENSGT00390000008978 #28	ENSGT00940000158482 #29	ENSGT00940000157425.B #31	ENSGT00730000111063 #24	ENSGT00940000173319	ENSGT00940000164222	ENSGT01030000234641.a.b #21	ENSGT00940000153430.a.b #22	ENSGT00940000155493	ENSGT00940000165086.b	ENSGT00940000157051	ENSGT00940000162185	ENSGT00940000162768.A	ENSGT00720000108792.A	ENSGT00940000175717	ENSGT00940000162844	ENSGT00940000156782.c	ENSGT00940000161552	ENSGT00940000161907	ENSGT00950000183132.B	ENSGT00390000003094	ENSGT00950000183037.B.a	ENSGT00950000182992.a.b.a.a
Percomorphaceae	ANCESTRAL SPECIES	30	ENSGT00390000007221.a.b	ENSGT00390000000046	ENSGT00940000163077	ENSGT00940000155525	ENSGT00900000142007	ENSGT00940000158658	ENSGT00940000176198	ENSGT00390000008787.b	ENSGT00390000008978 #28	ENSGT00940000158482 #29	ENSGT00940000157425.B #31	ENSGT00730000111063 #24	ENSGT00940000173319	ENSGT00940000164222	ENSGT01030000234641.a.b #21	ENSGT00940000153430.a.b #22	ENSGT00940000155493	ENSGT00940000165086.b	ENSGT00940000157051	ENSGT00940000162185	ENSGT00940000162768.A	ENSGT00720000108792.A	ENSGT00940000175717	ENSGT00940000162844	ENSGT00940000156782.c	ENSGT00940000161552	ENSGT00940000161907	ENSGT00950000183132.B	ENSGT00390000003094	ENSGT00950000183037.B.a	ENSGT00950000182992.a.b.a.a
Tiger tail seahorse	MODERN SPECIES	312	ENSHCOG00000004887	ENSHCOG00000004904	pcbd1 (ENSHCOG00000004927)	sgpl1 (ENSHCOG00000000128)	neurog3 (ENSHCOG00000004972)	pdlim1 (ENSHCOG00000004978)	ENSHCOG00000004989	ENSHCOG00000005027	ENSHCOG00000005107	fam204a (ENSHCOG00000005123) #28	RAB11FIP2 (ENSHCOG00000005129) #29	emx2 (ENSHCOG00000005139) #31	eif3s10 (ENSHCOG00000005197) #24	dennd10 (ENSHCOG00000000667)	sfxn4 (ENSHCOG00000005280) #21	prdx3 (ENSHCOG00000005301) #22	tm9sf3 (ENSHCOG00000005322)	si:ch211-117n7.7 (ENSHCOG00000005332)	MOCOS (ENSHCOG00000005351)	zgc:110045 (ENSHCOG00000000818)	vwc2 (ENSHCOG00000005459)	ENSHCOG00000000603	ikzf1 (ENSHCOG00000005494)	fignl1 (ENSHCOG00000005506)	ttl (ENSHCOG00000005533)	nanp (ENSHCOG00000005547)	cyp1b1 (ENSHCOG00000005556)	ENSHCOG00000005575	cdc42ep3 (ENSHCOG00000005581)	opn3 (ENSHCOG00000005612)	kmo (ENSHCOG00000005657)
Percomorphaceae_B	ANCESTRAL SPECIES	24	ENSGT00390000007221.a.b	ENSGT00390000000046	ENSGT00940000163077	ENSGT00940000155525	ENSGT00900000142007	ENSGT00940000158658	ENSGT00940000176198	ENSGT00390000008787.b	ENSGT00390000008978 #28	ENSGT00940000158482 #29	ENSGT00940000157425.B #31	ENSGT00730000111063 #24	ENSGT00940000173319	ENSGT00940000164222	ENSGT01030000234641.a.b #21	ENSGT00940000153430.a.b #22	ENSGT00940000155493	ENSGT00940000165086.b	ENSGT00940000157051	ENSGT00940000162185	ENSGT00940000162768.A	ENSGT00720000108792.A	ENSGT00940000175717	ENSGT00940000162844	ENSGT00940000156782.c	ENSGT00940000161552	ENSGT00940000161907	ENSGT00950000183132.B	ENSGT00390000003094	ENSGT00950000183037.B.a	ENSGT00950000182992.a.b.a.a
Ovalentaria	ANCESTRAL SPECIES	18	ENSGT00390000007221.a.b	ENSGT00390000000046	ENSGT00940000163077	ENSGT00940000155525	ENSGT00940000176198	ENSGT00940000158658	ENSGT00900000142007	ENSGT00390000008787.b	ENSGT00390000008978 #28	ENSGT00940000158482 #29	ENSGT00940000157425.B #31	ENSGT00730000111063 #24	ENSGT00940000173319	ENSGT00940000164222	ENSGT01030000234641.a.b #21	ENSGT00940000153430.a.b #22	ENSGT00940000155493	ENSGT00940000165086.b	ENSGT00940000157051	ENSGT00940000162185	ENSGT00940000162768.A	ENSGT00720000108792.A	ENSGT00940000175717	ENSGT00940000162844	ENSGT00940000156782.c	ENSGT00940000161552	ENSGT00940000161907	ENSGT00950000183132.B	ENSGT00390000003094	ENSGT00950000183037.B.a	ENSGT00950000182992.a.b.a.a
Atherinomorphae	ANCESTRAL SPECIES	16	ENSGT00940000179446	ENSGT00390000007221.a.b	ENSGT00390000000046	ENSGT00940000163077	ENSGT00940000155525	ENSGT00940000176198	ENSGT00940000158658	ENSGT00390000008787.b	ENSGT00390000008978 #28	ENSGT00940000158482 #29	ENSGT00940000157425.B #31	ENSGT00730000111063 #24	ENSGT00940000173319	ENSGT00940000164222	ENSGT01030000234641.a.b #21	ENSGT00940000153430.a.b #22	ENSGT00940000155493	ENSGT00940000165086.b	ENSGT00940000157051	ENSGT00940000162185	ENSGT00720000108792.A	ENSGT00940000175717	ENSGT00940000162844	ENSGT00940000156782.c	ENSGT00940000161552	ENSGT00940000161907	ENSGT00950000183132.B	ENSGT00390000003094	ENSGT00950000183037.B.a	ENSGT00950000182992.a.b.a.a	ENSGT00940000157736
Cyprinodontiformes	ANCESTRAL SPECIES	17	ENSGT00940000179446	ENSGT00390000007221.a.b	ENSGT00390000000046	ENSGT00940000163077	ENSGT00940000155525	ENSGT00940000176198	ENSGT00940000158658	ENSGT00390000008787.b	ENSGT00390000008978 #28	ENSGT00940000158482 #29	ENSGT00940000157425.B #31	ENSGT00730000111063 #24	ENSGT00940000173319	ENSGT00940000164222	ENSGT01030000234641.a.b #21	ENSGT00940000153430.a.b #22	ENSGT00940000155493	ENSGT00940000165086.b	ENSGT00940000157051	ENSGT00940000162185	ENSGT00720000108792.A	ENSGT00940000175717	ENSGT00940000162844	ENSGT00940000156782.c	ENSGT00940000161552	ENSGT00940000161907	ENSGT00950000183132.B	ENSGT00390000003094	ENSGT00950000183037.B.a	ENSGT00950000182992.a.b.a.a	ENSGT00940000157736
Cyprinodontoidei	ANCESTRAL SPECIES	14	ENSGT00940000179446	ENSGT00390000007221.a.b	ENSGT00390000000046	ENSGT00940000163077	ENSGT00940000155525	ENSGT00940000176198	ENSGT00940000158658	ENSGT00390000008787.b	ENSGT00390000008978 #28	ENSGT00940000158482 #29	ENSGT00940000157425.B #31	ENSGT00730000111063 #24	ENSGT00940000173319	ENSGT00940000164222	ENSGT01030000234641.a.b #21	ENSGT00940000153430.a.b #22	ENSGT00940000155493	ENSGT00940000165086.b	ENSGT00940000157051	ENSGT00940000162185	ENSGT00720000108792.A	ENSGT00940000175717	ENSGT00940000162844	ENSGT00940000156782.c	ENSGT00940000161552	ENSGT00940000161907	ENSGT00390000011010.a.b	ENSGT00940000158924	ENSGT00940000158284	ENSGT00940000159342.b	ENSGT00800000124177
Poeciliinae	ANCESTRAL SPECIES	16	ENSGT00390000001491.b	ENSGT00390000007221.a.b	ENSGT00390000000046	ENSGT00940000163077	ENSGT00940000155525	ENSGT00940000176198	ENSGT00940000158658	ENSGT00390000008787.b	ENSGT00390000008978 #28	ENSGT00940000158482 #29	ENSGT00940000157425.B #31	ENSGT00730000111063 #24	ENSGT00940000173319	ENSGT00940000164222	ENSGT01030000234641.a.b #21	ENSGT00940000153430.a.b #22	ENSGT00940000155493	ENSGT00940000161979.B.o.cb.d.a.a.a.b.a.a.b.b.b	ENSGT01100000263489.a.a.b.a.a.b.b.b.a.a.a.a.b.b.b.a.b.b.b.a.b	ENSGT01100000263489.a.a.b.a.a.b.b.b.a.a.a.a.b.b.b.b	ENSGT00940000165086.b	ENSGT00940000157051	ENSGT00940000162185	ENSGT00720000108792.A	ENSGT00940000175717	ENSGT00940000162844	ENSGT00940000156782.c	ENSGT00940000161552	ENSGT00940000161907	ENSGT00390000011010.a.b	ENSGT00940000158924
Poecilia	ANCESTRAL SPECIES	11	ENSGT00940000158499	ENSGT00390000001491.b	ENSGT00390000007221.a.b	ENSGT00390000000046	ENSGT00940000163077	ENSGT00940000155525	ENSGT00940000176198	ENSGT00940000158658	ENSGT00390000008787.b	ENSGT00390000008978 #28	ENSGT00940000158482 #29	ENSGT00940000157425.B #31	ENSGT00730000111063 #24	ENSGT00940000164222	ENSGT01030000234641.a.b #21	ENSGT00940000153430.a.b #22	ENSGT00940000155493	ENSGT00940000161979.B.o.cb.d.a.a.a.b.a.a.b.b.b	ENSGT01100000263489.a.a.b.a.a.b.b.b.a.a.a.a.b.b.b.a.b.b.b.a.b	ENSGT01100000263489.a.a.b.a.a.b.b.b.a.a.a.a.b.b.b.b	ENSGT00940000165086.b	ENSGT00940000157051	ENSGT00940000162185	ENSGT00720000108792.A	ENSGT00940000175717	ENSGT00940000156782.c	ENSGT00940000161552	ENSGT00940000161907	ENSGT00390000011010.a.b	ENSGT00940000158924	ENSGT00940000158284
NAME_6	ANCESTRAL SPECIES	136	ENSGT00940000158499	ENSGT00390000001491.b	ENSGT00390000007221.a.b	ENSGT00390000000046	ENSGT00940000163077	ENSGT00940000155525	ENSGT00940000176198	ENSGT00940000158658	ENSGT00390000008787.b	ENSGT00390000008978 #28	ENSGT00940000158482 #29	ENSGT00940000157425.B #31	ENSGT00730000111063 #24	ENSGT00940000164222	ENSGT01030000234641.a.b #21	ENSGT00940000153430.a.b #22	ENSGT00940000155493	ENSGT00940000161979.B.o.cb.d.a.a.a.b.a.a.b.b.b
Sailfin molly	MODERN SPECIES	1126											RAB11FIP2 (ENSPLAG00000001339) #29	emx2 (ENSPLAG00000001343) #31	eif3s10 (ENSPLAG00000001351) #24	dennd10 (ENSPLAG00000001359)	sfxn4 (ENSPLAG00000001363) #21	prdx3 (ENSPLAG00000001368) #22	tm9sf3 (ENSPLAG00000001372)	ENSPLAG00000001375	ENSPLAG00000001377	vapal (ENSPLAG00000001381)	APCDD1 (ENSPLAG00000001386)
Amazon molly	MODERN SPECIES	451	sec23ip (ENSPFOG00000009084) #10	csgalnact2 (ENSPFOG00000008869)	ret (ENSPFOG00000024271)	si:dkey-192p21.6 (ENSPFOG00000008747)	pcbd1 (ENSPFOG00000008707)	sgpl1 (ENSPFOG00000008462)	pdlim1 (ENSPFOG00000008379)	ENSPFOG00000008274	ENSPFOG00000008080	fam204a (ENSPFOG00000008016) #28	RAB11FIP2 (ENSPFOG00000007929) #29	emx2 (ENSPFOG00000007891) #31	eif3s10 (ENSPFOG00000007731) #24	dennd10 (ENSPFOG00000007625)	sfxn4 (ENSPFOG00000007623) #21	prdx3 (ENSPFOG00000007524) #22	tm9sf3 (ENSPFOG00000007358)	ENSPFOG00000007344	ENSPFOG00000007333
Guppy	MODERN SPECIES	445	ret (ENSPREG00000002410)	si:dkey-192p21.6 (ENSPREG00000002372)	pcbd1 (ENSPREG00000002349)	sgpl1 (ENSPREG00000002306)	ENSPREG00000002262	pdlim1 (ENSPREG00000002237)	ENSPREG00000002185	ENSPREG00000002168	fam204a (ENSPREG00000002154) #28	RAB11FIP2 (ENSPREG00000002138) #29	emx2 (ENSPREG00000002117) #31	ENSPREG00000002109	eif3s10 (ENSPREG00000002088) #24	dennd10 (ENSPREG00000002046)	sfxn4 (ENSPREG00000002002) #21	prdx3 (ENSPREG00000001978) #22	tm9sf3 (ENSPREG00000001930)	ENSPREG00000001889	ENSPREG00000001874	si:ch211-117n7.7 (ENSPREG00000001853)	MOCOS (ENSPREG00000001825)	zgc:110045 (ENSPREG00000001797)	vwc2 (ENSPREG00000001778)	ENSPREG00000001767	ikzf1 (ENSPREG00000001721)	ttl (ENSPREG00000001688)	cox5b2 (ENSPREG00000001646)	HERC4 (ENSPREG00000001565)	ENSPREG00000001546	ENSPREG00000001532	ENSPREG00000001508
Platyfish	MODERN SPECIES	14	ret (ENSXMAG00000014398)	si:dkey-192p21.6 (ENSXMAG00000027372)	pcbd1 (ENSXMAG00000007877)	sgpl1 (ENSXMAG00000007880)	neurog3 (ENSXMAG00000023519)	pdlim1 (ENSXMAG00000007899)	SORBS1 (ENSXMAG00000007912)	ENSXMAG00000007921	fam204a (ENSXMAG00000024476) #28	RAB11FIP2 (ENSXMAG00000007932) #29	emx2 (ENSXMAG00000025639) #31	eif3s10 (ENSXMAG00000007944) #24	ENSXMAG00000029111	dennd10 (ENSXMAG00000007970)	sfxn4 (ENSXMAG00000007978) #21	prdx3 (ENSXMAG00000007981) #22	tm9sf3 (ENSXMAG00000008001)	ENSXMAG00000028267	ENSXMAG00000023051	ENSXMAG00000027362	ENSXMAG00000026411	ENSXMAG00000027191	ENSXMAG00000024419	ENSXMAG00000024376	MOCOS (ENSXMAG00000008027)	zgc:110045 (ENSXMAG00000008030)	vwc2 (ENSXMAG00000008075)	ENSXMAG00000023437	ikzf1 (ENSXMAG00000024633)	fignl1 (ENSXMAG00000019831)	ttl (ENSXMAG00000008085)
NAME_4	ANCESTRAL SPECIES	58	ENSGT00390000001491.b	ENSGT00940000179446	ENSGT00390000007221.a.b	ENSGT00390000000046	ENSGT00940000163077	ENSGT00940000155525	ENSGT00940000158658	ENSGT00390000008787.b	ENSGT00390000008978 #28	ENSGT00940000158482 #29	ENSGT00940000157425.B #31	ENSGT00730000111063 #24	ENSGT00940000173319	ENSGT00940000164222	ENSGT01030000234641.a.b #21	ENSGT00940000153430.a.b #22	ENSGT00940000155493	ENSGT00940000165086.b	ENSGT00940000157051	ENSGT00940000162185	ENSGT00720000108792.A	ENSGT00940000156782.c	ENSGT00940000161552	ENSGT00940000161907	ENSGT00390000011010.a.b	ENSGT00940000158924.h	ENSGT00940000158284	ENSGT00940000159342.b	ENSGT00800000124177	ENSGT00530000063564.a	ENSGT00950000183181.A.a
Mummichog	MODERN SPECIES	524												emx2 (ENSFHEG00000018434) #31	eif3s10 (ENSFHEG00000018446) #24	dennd10 (ENSFHEG00000018480)	sfxn4 (ENSFHEG00000018506) #21	prdx3 (ENSFHEG00000018538) #22	tm9sf3 (ENSFHEG00000018574)	si:ch211-117n7.7 (ENSFHEG00000018604)	MOCOS (ENSFHEG00000018614)	ENSFHEG00000018838	vwc2 (ENSFHEG00000018856)
Sheepshead minnow	MODERN SPECIES	123	ENSCVAG00000005346	ENSCVAG00000005342	pcbd1 (ENSCVAG00000005333)	sgpl1 (ENSCVAG00000005326)	neurog3 (ENSCVAG00000005283)	pdlim1 (ENSCVAG00000005274)	SORBS1 (ENSCVAG00000005248)	ENSCVAG00000000729	fam204a (ENSCVAG00000005180) #28	RAB11FIP2 (ENSCVAG00000005173) #29	emx2 (ENSCVAG00000005139) #31	eif3s10 (ENSCVAG00000005115) #24	ENSCVAG00000004914	dennd10 (ENSCVAG00000004907)	sfxn4 (ENSCVAG00000004885) #21	prdx3 (ENSCVAG00000004846) #22	tm9sf3 (ENSCVAG00000004824)	si:ch211-117n7.7 (ENSCVAG00000004790)	MOCOS (ENSCVAG00000004771)	zgc:110045 (ENSCVAG00000004726)	vwc2 (ENSCVAG00000004705)	ikzf1 (ENSCVAG00000004689)	fignl1 (ENSCVAG00000000902)	ttl (ENSCVAG00000004655)	ENSCVAG00000004628	cox5b2 (ENSCVAG00000004611)	HERC4 (ENSCVAG00000004597)	ENSCVAG00000004542	ENSCVAG00000004532	mlh1 (ENSCVAG00000004525)	lrrfip2 (ENSCVAG00000000131)
Aplocheiloidei	ANCESTRAL SPECIES	28	ENSGT01050000244968.d	ENSGT00940000158499	ENSGT00390000001491.b	ENSGT00390000007221.a.b	ENSGT00390000000046	ENSGT00940000163077	ENSGT00940000155525	ENSGT00940000158658	ENSGT00390000008787.b	ENSGT00390000008978 #28	ENSGT00940000158482.j #29	ENSGT00940000157425.B #31	ENSGT00730000111063 #24	ENSGT00940000164222	ENSGT01030000234641.a.b #21	ENSGT00940000153430.a.b #22	ENSGT00940000155493	ENSGT00940000165086.b	ENSGT00940000157051	ENSGT00940000162185	ENSGT00720000108792.A	ENSGT00940000156782.c	ENSGT00940000161552	ENSGT00940000161907	ENSGT00950000183132.B	ENSGT00390000003094	ENSGT00950000183037.B.a	ENSGT00950000182992.a.b.a.a	ENSGT00940000157736	ENSGT01100000263502.A.a.b	ENSGT00390000000747
Mangrove rivulus	MODERN SPECIES	1062															sfxn4 (ENSKMAG00000017716) #21	prdx3 (ENSKMAG00000017670) #22	tm9sf3 (ENSKMAG00000017626)
Turquoise killifish	MODERN SPECIES	1612	CSGALNACT2 (ENSNFUG00015025168)	RET (ENSNFUG00015025186)	ENSNFUG00015025215	si:dkey-192p21.6 (ENSNFUG00015025217)	pdlim1 (ENSNFUG00015025220)	ENSNFUG00015025223	ENSNFUG00015025226	ENSNFUG00015025227	ENSNFUG00015025229	FAM204A (ENSNFUG00015025230) #28	RAB11FIP2 (ENSNFUG00015025233) #29	ENSNFUG00015025235	EMX2 (ENSNFUG00015025238) #31	EIF3S10 (ENSNFUG00015025241) #24	sfxn4 (ENSNFUG00015025247) #21	prdx3 (ENSNFUG00015025252) #22	tm9sf3 (ENSNFUG00015025274)	si:ch211-117n7.7 (ENSNFUG00015025280)	MOCOS (ENSNFUG00015025283)	Nfu_g_1_007869 (ENSNFUG00015025289)	ENSNFUG00015025291	ikzf1 (ENSNFUG00015025292)	FIGNL1 (ENSNFUG00015025294)	ENSNFUG00015025295	mcfd2 (ENSNFUG00015025296)	TTC7A (ENSNFUG00015000187)	ENSNFUG00015000216	ENSNFUG00015000225	calm2a (ENSNFUG00015000255)	ENSNFUG00015000303	ENSNFUG00015000316
Oryzias	ANCESTRAL SPECIES	6	ENSGT01050000244968.d	ENSGT00940000158499	ENSGT00390000001491.b.b	ENSGT00390000007221.a.b	ENSGT00390000000046	ENSGT00940000163077	ENSGT00940000155525	ENSGT00940000158658	ENSGT00390000008787.b	ENSGT00390000008978 #28	ENSGT00940000158482 #29	ENSGT00940000157425.B #31	ENSGT00730000111063 #24	ENSGT00940000164222	ENSGT01030000234641.a.b #21	ENSGT00940000153430.a.b #22	ENSGT00940000155493	ENSGT00940000165086.b	ENSGT00940000157051	ENSGT00940000162185	ENSGT00720000108792.A	ENSGT00940000156782.c	ENSGT00940000161552	ENSGT00940000161907
Oryzias_a	ANCESTRAL SPECIES	4	ENSGT01050000244968.d	ENSGT00940000158499	ENSGT00390000001491.b.b	ENSGT00390000007221.a.b	ENSGT00390000000046	ENSGT00940000163077	ENSGT00940000155525	ENSGT00940000158658	ENSGT00390000008787.b	ENSGT00390000008978 #28	ENSGT00940000158482 #29	ENSGT00940000157425.B #31	ENSGT00730000111063 #24	ENSGT00940000164222	ENSGT01030000234641.a.b #21	ENSGT00940000153430.a.b #22	ENSGT00940000155493	ENSGT00940000165086.b	ENSGT00940000157051	ENSGT00940000162185	ENSGT00720000108792.A	ENSGT00940000156782.c	ENSGT00940000161552	ENSGT00940000161907
Japanese Medaka HdrR	MODERN SPECIES	6	si:dkey-192p21.6 (ENSORLG00000014004)	sgpl1 (ENSORLG00000014050)	pcbd1 (ENSORLG00000014027)	pdlim1 (ENSORLG00000014111)	neurog3 (ENSORLG00000028099)	ENSORLG00000027680	ENSORLG00000014121	ENSORLG00000028547	ENSORLG00000025192	fam204a (ENSORLG00000014133) #28	RAB11FIP2 (ENSORLG00000014141) #29	emx2 (ENSORLG00000014157) #31	eif3s10 (ENSORLG00000014215) #24	dennd10 (ENSORLG00000014242)	sfxn4 (ENSORLG00000028960) #21	prdx3 (ENSORLG00000014265) #22	tm9sf3 (ENSORLG00000014307)	si:ch211-117n7.7 (ENSORLG00000014318)	MOCOS (ENSORLG00000014333)	ENSORLG00000014385	vwc2 (ENSORLG00000023061)	ikzf1 (ENSORLG00000029168)	fignl1 (ENSORLG00000020561)	ttl (ENSORLG00000022757)
Chinese medaka	MODERN SPECIES	832	ENSOSIG00000011143	sec23ip (ENSOSIG00000011148) #10	csgalnact2 (ENSOSIG00000011311)	ret (ENSOSIG00000011314)	ENSOSIG00000011531	si:dkey-192p21.6 (ENSOSIG00000011533)	pcbd1 (ENSOSIG00000011538)	sgpl1 (ENSOSIG00000011542)	ENSOSIG00000011548	pdlim1 (ENSOSIG00000011551)	ENSOSIG00000011556	fam204a (ENSOSIG00000011560) #28	ENSOSIG00000011563 #29	emx2 (ENSOSIG00000011564) #31	dennd10 (ENSOSIG00000011686)	prdx3 (ENSOSIG00000011688) #22	tm9sf3 (ENSOSIG00000011689)	si:ch211-117n7.7 (ENSOSIG00000011721)	zgc:110045 (ENSOSIG00000011799)	vwc2 (ENSOSIG00000011801)	ikzf1 (ENSOSIG00000011802)	fignl1 (ENSOSIG00000011811)	ttl (ENSOSIG00000011812)
Oryzias_b	ANCESTRAL SPECIES	7	ENSGT01050000244968.d	ENSGT00940000158499	ENSGT00390000001491.b.b	ENSGT00390000007221.a.b	ENSGT00390000000046	ENSGT00940000163077	ENSGT00940000155525	ENSGT00940000158658	ENSGT00390000008787.b	ENSGT00390000008978 #28	ENSGT00940000158482 #29	ENSGT00940000157425.B #31	ENSGT00730000111063 #24	ENSGT00940000164222	ENSGT01030000234641.a.b #21	ENSGT00940000153430.a.b #22	ENSGT00940000155493	ENSGT00940000165086.b	ENSGT00940000157051	ENSGT00940000162185	ENSGT00720000108792.A	ENSGT00940000156782.c	ENSGT00940000161552	ENSGT00940000161907	ENSGT00390000018052	ENSGT00940000156530.c.`b.b	ENSGT00950000183091.A.b	ENSGT00390000004284.e	ENSGT00940000155933.b.a	ENSGT00940000163653	ENSGT01050000244827.E
Indian medaka	MODERN SPECIES	27	ret (ENSOMEG00000000822)	si:dkey-192p21.6 (ENSOMEG00000016609)	pcbd1 (ENSOMEG00000016592)	sgpl1 (ENSOMEG00000016572)	neurog3 (ENSOMEG00000016535)	pdlim1 (ENSOMEG00000016530)	ENSOMEG00000016512	ENSOMEG00000016489	fam204a (ENSOMEG00000016441) #28	ENSOMEG00000016421 #29	ENSOMEG00000016368	emx2 (ENSOMEG00000016353) #31	eif3s10 (ENSOMEG00000016323) #24	dennd10 (ENSOMEG00000016292)	ENSOMEG00000016264	prdx3 (ENSOMEG00000016096) #22	tm9sf3 (ENSOMEG00000015558)	si:ch211-117n7.7 (ENSOMEG00000015534)	ENSOMEG00000015500	ENSOMEG00000015473	ENSOMEG00000015459	vwc2 (ENSOMEG00000015433)
Javanese ricefish	MODERN SPECIES	6	ret (ENSOJAG00000020105)	si:dkey-192p21.6 (ENSOJAG00000020084)	ENSOJAG00000020077	pcbd1 (ENSOJAG00000020064)	sgpl1 (ENSOJAG00000019866)	neurog3 (ENSOJAG00000019814)	pdlim1 (ENSOJAG00000019801)	SORBS1 (ENSOJAG00000019742)	ENSOJAG00000019721	fam204a (ENSOJAG00000019712) #28	RAB11FIP2 (ENSOJAG00000019706) #29	emx2 (ENSOJAG00000019692) #31	eif3s10 (ENSOJAG00000019632) #24	dennd10 (ENSOJAG00000019610)	sfxn4 (ENSOJAG00000019603) #21	prdx3 (ENSOJAG00000019576) #22	tm9sf3 (ENSOJAG00000019377)	si:ch211-117n7.7 (ENSOJAG00000019281)	zgc:110045 (ENSOJAG00000019155)	vwc2 (ENSOJAG00000019149)	ikzf1 (ENSOJAG00000019082)	fignl1 (ENSOJAG00000019074)	ttl (ENSOJAG00000019060)	pno1 (ENSOJAG00000019001)	dnaaf10 (ENSOJAG00000018831)	cnrip1b (ENSOJAG00000018812)	KCNQ5 (ENSOJAG00000018681)	ddx43 (ENSOJAG00000018507)	ENSOJAG00000018490	eef1a1b (ENSOJAG00000018399)	ENSOJAG00000018267
Ovalentaria_B	ANCESTRAL SPECIES	25	ENSGT00940000179446	ENSGT00390000007221.a.b	ENSGT00390000000046	ENSGT00940000163077	ENSGT00940000155525	ENSGT00940000158658	ENSGT00900000142007	ENSGT00940000176198	ENSGT00390000008787.b	ENSGT00390000008978 #28	ENSGT00940000158482 #29	ENSGT00940000157425.B #31	ENSGT00730000111063 #24	ENSGT00940000164222	ENSGT01030000234641.a.b #21	ENSGT00940000153430.a.b #22	ENSGT00940000155493	ENSGT00940000165086.b	ENSGT00940000157051	ENSGT00940000162185	ENSGT00940000162768.A	ENSGT00720000108792.A	ENSGT00940000175717	ENSGT00940000162844	ENSGT00940000156782.c	ENSGT00940000161552	ENSGT00940000161907	ENSGT00950000183132.B	ENSGT00390000003094	ENSGT00950000183037.B.a	ENSGT00950000182992.a.b.a.a
Pomacentridae	ANCESTRAL SPECIES	9	ENSGT00390000001491.b	ENSGT00940000179446	ENSGT00390000007221.a.b	ENSGT00390000000046	ENSGT00940000163077	ENSGT00940000155525	ENSGT00940000158658	ENSGT00900000142007	ENSGT00390000008787.b	ENSGT00390000008978 #28	ENSGT00940000158482 #29	ENSGT00940000157425.B #31	ENSGT00730000111063 #24	ENSGT00940000164222	ENSGT01030000234641.a.b #21	ENSGT00940000153430.a.b #22	ENSGT00940000155493	ENSGT00940000165086.b	ENSGT00940000157051	ENSGT00940000162185	ENSGT00720000108792.A	ENSGT00940000175717	ENSGT00940000162844	ENSGT00940000156782.c	ENSGT00940000161552	ENSGT00940000161907
Pomacentridae_A	ANCESTRAL SPECIES	7	ENSGT00940000158499	ENSGT00390000001491.b	ENSGT00390000007221.a.b	ENSGT00390000000046	ENSGT00940000163077	ENSGT00940000155525	ENSGT00940000158658	ENSGT00900000142007	ENSGT00390000008787.b	ENSGT00390000008978 #28	ENSGT00940000158482 #29	ENSGT00940000157425.B #31	ENSGT00730000111063 #24	ENSGT00940000164222	ENSGT01030000234641.a.b #21	ENSGT00940000153430.a.b #22	ENSGT00940000155493	ENSGT00940000165086.b	ENSGT00940000157051	ENSGT00940000162185	ENSGT00720000108792.A	ENSGT00940000175717	ENSGT00940000156782.c	ENSGT00940000161552	ENSGT00940000161907
Amphiprion	ANCESTRAL SPECIES	45	ENSGT01050000244968.d	ENSGT00940000158499	ENSGT00390000001491.b	ENSGT00390000007221.a.b	ENSGT00390000000046	ENSGT00940000163077	ENSGT00940000155525	ENSGT00940000158658	ENSGT00390000008787.b	ENSGT00390000008978 #28	ENSGT00940000158482 #29	ENSGT00940000157425.B #31	ENSGT00730000111063 #24	ENSGT00940000164222	ENSGT01030000234641.a.b #21	ENSGT00940000153430.a.b #22	ENSGT00940000155493	ENSGT00940000165086.b	ENSGT00940000157051	ENSGT00940000162185	ENSGT00720000108792.A	ENSGT00940000156782.c	ENSGT00940000161552	ENSGT00940000161907	ENSGT00950000183109.c.a.a.a.a	ENSGT00390000005029	ENSGT00940000164115.A.f.b.a.a.b.a	ENSGT00940000159518.a	ENSGT00940000164095.a	ENSGT00940000164611.a.b	ENSGT00940000158698
Clown anemonefish	MODERN SPECIES	1346	csgalnact2 (ENSAOCG00000004866)	ret (ENSAOCG00000004906)	si:dkey-192p21.6 (ENSAOCG00000004923)	pcbd1 (ENSAOCG00000004933)	sgpl1 (ENSAOCG00000004973)	neurog3 (ENSAOCG00000000201)	pdlim1 (ENSAOCG00000004993)	ENSAOCG00000005028	ENSAOCG00000000209	fam204a (ENSAOCG00000005075) #28	RAB11FIP2 (ENSAOCG00000005080) #29	emx2 (ENSAOCG00000005089) #31	eif3s10 (ENSAOCG00000005109) #24	dennd10 (ENSAOCG00000005139)	sfxn4 (ENSAOCG00000005155) #21	prdx3 (ENSAOCG00000005166) #22	tm9sf3 (ENSAOCG00000005200)	si:ch211-117n7.7 (ENSAOCG00000005217)	MOCOS (ENSAOCG00000005246)	zgc:110045 (ENSAOCG00000005266)	vwc2 (ENSAOCG00000005272)	ikzf1 (ENSAOCG00000005308)	fignl1 (ENSAOCG00000005321)	ttl (ENSAOCG00000005340)	ENSAOCG00000005361
Orange clownfish	MODERN SPECIES	12	csgalnact2 (ENSAPEG00000024764)	ret (ENSAPEG00000024768)	si:dkey-192p21.6 (ENSAPEG00000024772)	pcbd1 (ENSAPEG00000024773)	sgpl1 (ENSAPEG00000024775)	neurog3 (ENSAPEG00000024779)	pdlim1 (ENSAPEG00000024781)	ENSAPEG00000024791	ENSAPEG00000024807	fam204a (ENSAPEG00000024808) #28	RAB11FIP2 (ENSAPEG00000024809) #29	emx2 (ENSAPEG00000000312) #31	eif3s10 (ENSAPEG00000000491) #24	dennd10 (ENSAPEG00000000514)	sfxn4 (ENSAPEG00000000585) #21	prdx3 (ENSAPEG00000000601) #22	tm9sf3 (ENSAPEG00000000610)	si:ch211-117n7.7 (ENSAPEG00000000636)	MOCOS (ENSAPEG00000000704)	zgc:110045 (ENSAPEG00000000729)	vwc2 (ENSAPEG00000000741)	ikzf1 (ENSAPEG00000000762)	fignl1 (ENSAPEG00000000794)	ttl (ENSAPEG00000000811)	wbp1la (ENSAPEG00000000943)	fbxw4 (ENSAPEG00000001006)	ENSAPEG00000001047	fgf8a (ENSAPEG00000001059)	slc2a15a (ENSAPEG00000001082)	ENSAPEG00000001191	ENSAPEG00000001218
Spiny chromis	MODERN SPECIES	254	ret (ENSAPOG00000015142)	si:dkey-192p21.6 (ENSAPOG00000015017)	pcbd1 (ENSAPOG00000015006)	sgpl1 (ENSAPOG00000014971)	pdlim1 (ENSAPOG00000014883)	neurog3 (ENSAPOG00000000413)	ENSAPOG00000014811	ENSAPOG00000014768	ENSAPOG00000014749	fam204a (ENSAPOG00000014733) #28	RAB11FIP2 (ENSAPOG00000014717) #29	emx2 (ENSAPOG00000014709) #31	eif3s10 (ENSAPOG00000014687) #24	dennd10 (ENSAPOG00000014680)	sfxn4 (ENSAPOG00000014641) #21	prdx3 (ENSAPOG00000014626) #22
Bicolor damselfish	MODERN SPECIES	603				sgpl1 (ENSSPAG00000017920)	pdlim1 (ENSSPAG00000017975)	neurog3 (ENSSPAG00000018007)	ENSSPAG00000018024	ENSSPAG00000000035	ENSSPAG00000000043	fam204a (ENSSPAG00000000068) #28	RAB11FIP2 (ENSSPAG00000000078) #29	emx2 (ENSSPAG00000000082) #31	eif3s10 (ENSSPAG00000000094) #24	dennd10 (ENSSPAG00000000337)	sfxn4 (ENSSPAG00000000392) #21	prdx3 (ENSSPAG00000000404) #22	tm9sf3 (ENSSPAG00000000421)	si:ch211-117n7.7 (ENSSPAG00000000479)	MOCOS (ENSSPAG00000000548)	zgc:110045 (ENSSPAG00000000563)	vwc2 (ENSSPAG00000000580)	ENSSPAG00000000594	ikzf1 (ENSSPAG00000000626)	fignl1 (ENSSPAG00000000651)	ENSSPAG00000000663
Cichlidae	ANCESTRAL SPECIES	13	ENSGT00940000158499	ENSGT00390000001491.b	ENSGT00390000007221.a.b	ENSGT00390000000046	ENSGT00940000163077	ENSGT00940000155525	ENSGT00940000158658	ENSGT00940000176198	ENSGT00390000008787.b	ENSGT00390000008978 #28	ENSGT00940000158482 #29	ENSGT00940000157425.B #31	ENSGT00730000111063 #24	ENSGT00940000164222	ENSGT01030000234641.a.b #21	ENSGT00940000153430.a.b #22	ENSGT00940000155493	ENSGT00940000165086.b	ENSGT00940000157051	ENSGT00940000162185	ENSGT00940000162768.A	ENSGT00720000108792.A	ENSGT00940000175717	ENSGT00940000156782.c	ENSGT00940000161552	ENSGT00940000161907	ENSGT00950000183132.B	ENSGT00390000003094	ENSGT00950000183037.B.a	ENSGT00950000182992.a.b.a.a	ENSGT00940000157736
Pseudocrenilabrinae	ANCESTRAL SPECIES	16	ENSGT00940000158499	ENSGT00390000001491.b	ENSGT00390000007221.a.b	ENSGT00390000000046	ENSGT00940000163077	ENSGT00940000155525	ENSGT00940000158658	ENSGT00940000176198	ENSGT00390000008787.b	ENSGT00390000008978 #28	ENSGT00940000158482 #29	ENSGT00940000157425.B #31	ENSGT00730000111063 #24	ENSGT00940000164222	ENSGT01030000234641.a.b #21	ENSGT00940000153430.a.b #22	ENSGT00940000155493	ENSGT00940000165086.b	ENSGT00940000157051	ENSGT00940000162185	ENSGT00940000162768.A	ENSGT00720000108792.A	ENSGT00940000175717	ENSGT00940000156782.c	ENSGT00940000161552	ENSGT00940000161907	ENSGT00950000183132.B	ENSGT00390000003094	ENSGT00950000183037.B.a	ENSGT00950000182992.a.b.a.a	ENSGT00940000157736
Nile tilapia	MODERN SPECIES	4	csgalnact2 (ENSONIG00000010318)	ret (ENSONIG00000010322)	si:dkey-192p21.6 (ENSONIG00000010326)	pcbd1 (ENSONIG00000010328)	sgpl1 (ENSONIG00000010329)	neurog3 (ENSONIG00000033870)	pdlim1 (ENSONIG00000010331)	ENSONIG00000010334	ENSONIG00000010335	fam204a (ENSONIG00000032538) #28	RAB11FIP2 (ENSONIG00000010342) #29	emx2 (ENSONIG00000010343) #31	eif3s10 (ENSONIG00000010344) #24	dennd10 (ENSONIG00000010349)	sfxn4 (ENSONIG00000010353) #21	prdx3 (ENSONIG00000010357) #22	tm9sf3 (ENSONIG00000010363)	si:ch211-117n7.7 (ENSONIG00000040104)	MOCOS (ENSONIG00000010367)	zgc:110045 (ENSONIG00000010370)	vwc2 (ENSONIG00000010377)	SPATA48 (ENSONIG00000010378)	ikzf1 (ENSONIG00000010379)	fignl1 (ENSONIG00000021269)	ttl (ENSONIG00000010380)	polr1b (ENSONIG00000010382)	nanp (ENSONIG00000010387)	cyp1b1 (ENSONIG00000035380)	ENSONIG00000010389	cdc42ep3 (ENSONIG00000038744)	ENSONIG00000030170
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	11	ENSGT00940000158499	ENSGT00390000001491.b	ENSGT00390000007221.a.b	ENSGT00390000000046	ENSGT00940000163077	ENSGT00940000155525	ENSGT00940000158658	ENSGT00940000176198	ENSGT00390000008787.b	ENSGT00390000008978 #28	ENSGT00940000158482 #29	ENSGT00940000157425.B #31	ENSGT00730000111063 #24	ENSGT00940000164222	ENSGT01030000234641.a.b #21	ENSGT00940000153430.a.b #22	ENSGT00940000155493	ENSGT00940000165086.b	ENSGT00940000157051	ENSGT00940000162185	ENSGT00940000162768.A	ENSGT00720000108792.A	ENSGT00940000175717	ENSGT00940000156782.c	ENSGT00940000161552	ENSGT00940000161907	ENSGT00950000183132.B	ENSGT00390000003094	ENSGT00950000183037.B.a	ENSGT00950000182992.a.b.a.a	ENSGT00940000157736
Haplochromini	ANCESTRAL SPECIES	10	ENSGT00940000158499	ENSGT00390000001491.b	ENSGT00390000007221.a.b	ENSGT00390000000046	ENSGT00940000163077	ENSGT00940000155525	ENSGT00940000158658	ENSGT00940000176198	ENSGT00390000008787.b	ENSGT00390000008978 #28	ENSGT00940000158482 #29	ENSGT00940000157425.B #31	ENSGT00730000111063 #24	ENSGT00940000164222	ENSGT01030000234641.a.b #21	ENSGT00940000153430.a.b #22	ENSGT00940000155493	ENSGT00940000165086.b	ENSGT00940000157051	ENSGT00940000162185	ENSGT00940000162768.A	ENSGT00720000108792.A	ENSGT00940000175717	ENSGT00940000156782.c	ENSGT00940000161552	ENSGT00940000161907	ENSGT00950000183132.B	ENSGT00390000003094	ENSGT00950000183037.B.a	ENSGT00950000182992.a.b.a.a	ENSGT00990000205745
Haplochromini_A	ANCESTRAL SPECIES	8	ENSGT00940000158499	ENSGT00390000001491.b	ENSGT00390000007221.a.b	ENSGT00390000000046	ENSGT00940000163077	ENSGT00940000155525	ENSGT00940000158658	ENSGT00940000176198	ENSGT00390000008787.b	ENSGT00390000008978 #28	ENSGT00940000158482 #29	ENSGT00940000157425.B #31	ENSGT00730000111063 #24	ENSGT00940000164222	ENSGT01030000234641.a.b #21	ENSGT00940000153430.a.b #22	ENSGT00940000155493	ENSGT00940000165086.b	ENSGT00940000157051	ENSGT00940000162185	ENSGT00940000162768.A	ENSGT00720000108792.A	ENSGT00940000175717	ENSGT00940000156782.c	ENSGT00940000161552	ENSGT00940000161907	ENSGT00950000183132.B	ENSGT00390000003094	ENSGT00950000183037.B.a	ENSGT00950000182992.a.b.a.a	ENSGT00990000205745
Haplochromini_B	ANCESTRAL SPECIES	5	ENSGT01050000244968.d	ENSGT00940000158499	ENSGT00390000001491.b	ENSGT00390000007221.a.b	ENSGT00390000000046	ENSGT00940000163077	ENSGT00940000155525	ENSGT00940000158658	ENSGT00390000008787.b	ENSGT00390000008978 #28	ENSGT00940000158482 #29	ENSGT00940000157425.B #31	ENSGT00730000111063 #24	ENSGT00940000164222	ENSGT01030000234641.a.b #21	ENSGT00940000153430.a.b #22	ENSGT00940000155493	ENSGT00940000165086.b	ENSGT00940000157051	ENSGT00940000162185	ENSGT00720000108792.A	ENSGT00940000175717	ENSGT00940000156782.c	ENSGT00940000161552	ENSGT00940000161907	ENSGT00950000183132.B	ENSGT00390000003094	ENSGT00950000183037.B.a	ENSGT00950000182992.a.b.a.a	ENSGT00990000205745	ENSGT00940000157736
Zebra mbuna	MODERN SPECIES	1095	csgalnact2 (ENSMZEG00005011401)	ret (ENSMZEG00005011427)	si:dkey-192p21.6 (ENSMZEG00005011473)	pcbd1 (ENSMZEG00005011502)	sgpl1 (ENSMZEG00005011531)	neurog3 (ENSMZEG00005011555)	pdlim1 (ENSMZEG00005011560)	ENSMZEG00005011582	ENSMZEG00005011633	fam204a (ENSMZEG00005011650) #28	RAB11FIP2 (ENSMZEG00005011664) #29	emx2 (ENSMZEG00005011675) #31	eif3s10 (ENSMZEG00005011687) #24	dennd10 (ENSMZEG00005011705)	sfxn4 (ENSMZEG00005011716) #21	prdx3 (ENSMZEG00005011726) #22	tm9sf3 (ENSMZEG00005011738)	si:ch211-117n7.7 (ENSMZEG00005011758)	MOCOS (ENSMZEG00005011771)	zgc:110045 (ENSMZEG00005011785)	vwc2 (ENSMZEG00005011800)	ENSMZEG00005011805	ikzf1 (ENSMZEG00005011814)	fignl1 (ENSMZEG00005011830)	ttl (ENSMZEG00005011836)	polr1b (ENSMZEG00005011850)	nanp (ENSMZEG00005011895)	cyp1b1 (ENSMZEG00005011902)	ENSMZEG00005011912	ENSMZEG00005011927	cdc42ep3 (ENSMZEG00005011936)
Eastern happy	MODERN SPECIES	4	csgalnact2 (ENSACLG00000020337)	ret (ENSACLG00000020251)	si:dkey-192p21.6 (ENSACLG00000020199)	pcbd1 (ENSACLG00000020173)	sgpl1 (ENSACLG00000020094)	neurog3 (ENSACLG00000020073)	pdlim1 (ENSACLG00000020045)	ENSACLG00000019832	ENSACLG00000019795	fam204a (ENSACLG00000019771) #28	RAB11FIP2 (ENSACLG00000019737) #29	emx2 (ENSACLG00000019701) #31	eif3s10 (ENSACLG00000019633) #24	dennd10 (ENSACLG00000019595)	sfxn4 (ENSACLG00000019563) #21	prdx3 (ENSACLG00000019533) #22	tm9sf3 (ENSACLG00000019412)	si:ch211-117n7.7 (ENSACLG00000019357)	MOCOS (ENSACLG00000019326)	zgc:110045 (ENSACLG00000019285)	vwc2 (ENSACLG00000019267)	ENSACLG00000019250	ikzf1 (ENSACLG00000019183)	fignl1 (ENSACLG00000019173)	ttl (ENSACLG00000019158)	polr1b (ENSACLG00000019089)	nanp (ENSACLG00000019128)	cyp1b1 (ENSACLG00000019072)	ENSACLG00000019021	ENSACLG00000018996	cdc42ep3 (ENSACLG00000018959)
P. nyererei	MODERN SPECIES	357	ret (ENSPNYG00000004000)	si:dkey-192p21.6 (ENSPNYG00000004074)	pcbd1 (ENSPNYG00000004125)	sgpl1 (ENSPNYG00000004147)	neurog3 (ENSPNYG00000004189)	pdlim1 (ENSPNYG00000004208)	ENSPNYG00000004261	ENSPNYG00000004337	ENSPNYG00000004356	fam204a (ENSPNYG00000004383) #28	RAB11FIP2 (ENSPNYG00000004434) #29	emx2 (ENSPNYG00000004443) #31	eif3s10 (ENSPNYG00000004463) #24	dennd10 (ENSPNYG00000004489)	sfxn4 (ENSPNYG00000004513) #21	prdx3 (ENSPNYG00000004538) #22	tm9sf3 (ENSPNYG00000004560)	si:ch211-117n7.7 (ENSPNYG00000004605)	MOCOS (ENSPNYG00000004621)	zgc:110045 (ENSPNYG00000004637)	ENSPNYG00000004656	vwc2 (ENSPNYG00000004675)	ENSPNYG00000004690	ikzf1 (ENSPNYG00000004706)	fignl1 (ENSPNYG00000004728)	ttl (ENSPNYG00000004738)	polr1b (ENSPNYG00000004767)	nanp (ENSPNYG00000004822)	ENSPNYG00000004830	cyp1b1 (ENSPNYG00000004853)	ENSPNYG00000004938
Burton s mouthbrooder	MODERN SPECIES	353	csgalnact2 (ENSHBUG00000011764)	ret (ENSHBUG00000011869)	ENSHBUG00000011880	pcbd1 (ENSHBUG00000011890)	sgpl1 (ENSHBUG00000011997)	neurog3 (ENSHBUG00000012034)	pdlim1 (ENSHBUG00000012064)	ENSHBUG00000012133	ENSHBUG00000012158	fam204a (ENSHBUG00000012164) #28	RAB11FIP2 (ENSHBUG00000012171) #29	emx2 (ENSHBUG00000012199) #31	eif3s10 (ENSHBUG00000012286) #24	dennd10 (ENSHBUG00000012319)	sfxn4 (ENSHBUG00000012364) #21	prdx3 (ENSHBUG00000012389) #22	tm9sf3 (ENSHBUG00000012429)	si:ch211-117n7.7 (ENSHBUG00000012449)	MOCOS (ENSHBUG00000012470)	zgc:110045 (ENSHBUG00000012495)	vwc2 (ENSHBUG00000012514)	ENSHBUG00000012524	ikzf1 (ENSHBUG00000012566)	fignl1 (ENSHBUG00000012574)	ttl (ENSHBUG00000012602)	polr1b (ENSHBUG00000012650)	nanp (ENSHBUG00000012607)	cyp1b1 (ENSHBUG00000012667)
Lyretail cichlid	MODERN SPECIES	349	csgalnact2 (ENSNBRG00000017040)	ret (ENSNBRG00000017065)	si:dkey-192p21.6 (ENSNBRG00000017102)	pcbd1 (ENSNBRG00000017129)	sgpl1 (ENSNBRG00000017161)	neurog3 (ENSNBRG00000017203)	pdlim1 (ENSNBRG00000017211)	ENSNBRG00000017256	ENSNBRG00000017396	fam204a (ENSNBRG00000017418) #28	RAB11FIP2 (ENSNBRG00000017441) #29	emx2 (ENSNBRG00000017466) #31	eif3s10 (ENSNBRG00000017477) #24	dennd10 (ENSNBRG00000017512)	sfxn4 (ENSNBRG00000017533) #21	prdx3 (ENSNBRG00000017556) #22	tm9sf3 (ENSNBRG00000017572)	si:ch211-117n7.7 (ENSNBRG00000017601)	MOCOS (ENSNBRG00000017626)	zgc:110045 (ENSNBRG00000017646)	vwc2 (ENSNBRG00000017668)	ENSNBRG00000017691	ikzf1 (ENSNBRG00000017751)	fignl1 (ENSNBRG00000017951)	ttl (ENSNBRG00000017961)	polr1b (ENSNBRG00000017979)	nanp (ENSNBRG00000018023)	cyp1b1 (ENSNBRG00000018040)	ENSNBRG00000018090	cdc42ep3 (ENSNBRG00000018135)	ENSNBRG00000018145
Midas cichlid	MODERN SPECIES	354	ret (ENSACIG00000003477)	si:dkey-192p21.6 (ENSACIG00000003448)	pcbd1 (ENSACIG00000003432)	sgpl1 (ENSACIG00000003401)	neurog3 (ENSACIG00000003362)	pdlim1 (ENSACIG00000003219)	SORBS1 (ENSACIG00000003174)	ENSACIG00000003145	ENSACIG00000003109	fam204a (ENSACIG00000003082) #28	RAB11FIP2 (ENSACIG00000003068) #29	emx2 (ENSACIG00000003052) #31	eif3s10 (ENSACIG00000002889) #24	dennd10 (ENSACIG00000002853)	sfxn4 (ENSACIG00000002836) #21	prdx3 (ENSACIG00000002819) #22	tm9sf3 (ENSACIG00000002795)	si:ch211-117n7.7 (ENSACIG00000002736)	MOCOS (ENSACIG00000002689)	zgc:110045 (ENSACIG00000002577)	vwc2 (ENSACIG00000002545)	ENSACIG00000002534	ikzf1 (ENSACIG00000002401)	ttl (ENSACIG00000002346)	fignl1 (ENSACIG00000002335)	polr1b (ENSACIG00000002290)	nanp (ENSACIG00000002282)	cyp1b1 (ENSACIG00000002206)	ENSACIG00000002175	cdc42ep3 (ENSACIG00000002166)	opn3 (ENSACIG00000002135)
Percomorphaceae_C	ANCESTRAL SPECIES	18	ENSGT00390000001491.b	ENSGT00390000007221.a.b	ENSGT00390000000046	ENSGT00940000163077	ENSGT00940000155525	ENSGT00900000142007	ENSGT00940000158658	ENSGT00940000176198	ENSGT00390000008787.b	ENSGT00390000008978 #28	ENSGT00940000158482 #29	ENSGT00940000157425.B #31	ENSGT00730000111063 #24	ENSGT00940000164222	ENSGT01030000234641.a.b #21	ENSGT00940000153430.a.b #22	ENSGT00940000155493	ENSGT00940000165086.b	ENSGT00940000157051	ENSGT00940000162185	ENSGT00720000108792.A	ENSGT00940000175717	ENSGT00940000156782.c	ENSGT00940000161552	ENSGT00940000161907	ENSGT00950000183132.B	ENSGT00390000003094	ENSGT00950000183037.B.a	ENSGT00950000182992.a.b.a.a	ENSGT00940000157736	ENSGT01100000263502.A.a.b
Eupercaria	ANCESTRAL SPECIES	15	ENSGT00940000158499	ENSGT00390000001491.b	ENSGT00390000007221.a.b	ENSGT00390000000046	ENSGT00940000163077	ENSGT00940000155525	ENSGT00940000158658	ENSGT00940000176198	ENSGT00390000008787.b	ENSGT00390000008978 #28	ENSGT00940000158482 #29	ENSGT00940000157425.B #31	ENSGT00730000111063 #24	ENSGT00940000164222	ENSGT01030000234641.a.b #21	ENSGT00940000153430.a.b #22	ENSGT00940000155493	ENSGT00940000165086.b	ENSGT00940000157051	ENSGT00940000162185	ENSGT00720000108792.A	ENSGT00940000175717	ENSGT00940000156782.c	ENSGT00940000161552	ENSGT00940000161907	ENSGT00950000183132.B	ENSGT00390000003094	ENSGT00950000183037.B.a	ENSGT00950000182992.a.b.a.a	ENSGT00940000157736	ENSGT01100000263502.A.a.b
Tetraodontidae	ANCESTRAL SPECIES	7	ENSGT00940000156602 #10	ENSGT01050000244968.d	ENSGT00940000158499	ENSGT00390000007221.a.b	ENSGT00390000000046	ENSGT00940000163077	ENSGT00940000155525	ENSGT00940000158658	ENSGT00940000176198	ENSGT00390000008787.b	ENSGT00390000008978 #28	ENSGT00940000158482 #29	ENSGT00940000157425.B #31	ENSGT00730000111063 #24	ENSGT00940000164222	ENSGT00940000153430.a.b #22	ENSGT00940000155493	ENSGT00940000165086.b	ENSGT00940000157051	ENSGT00940000162185	ENSGT00720000108792.A	ENSGT00940000156782.c	ENSGT00940000161552	ENSGT00940000161907
Tetraodon	MODERN SPECIES	9	csgalnact2 (ENSTNIG00000013086)	ret (ENSTNIG00000013085)	sgpl1 (ENSTNIG00000013084)	pdlim1 (ENSTNIG00000013083)	ENSTNIG00000013082	ENSTNIG00000013081	RAB11FIP2 (ENSTNIG00000005714) #29	gnrhr1 (ENSTNIG00000004999)	meox2b (ENSTNIG00000005000)	tmem106bb (ENSTNIG00000005001)	thsd7aa (ENSTNIG00000006219)	nxph1 (ENSTNIG00000006218)	emx2 (ENSTNIG00000002977) #31	eif3s10 (ENSTNIG00000002976) #24	phf14 (ENSTNIG00000002975)	prdx3 (ENSTNIG00000019627) #22	tm9sf3 (ENSTNIG00000003548)	MOCOS (ENSTNIG00000003547)	zgc:110045 (ENSTNIG00000003546)
Eupecaria_A	ANCESTRAL SPECIES	26	ENSGT00940000158499	ENSGT00390000001491.b	ENSGT00390000007221.a.b	ENSGT00390000000046	ENSGT00940000163077	ENSGT00940000155525	ENSGT00940000158658	ENSGT00940000176198	ENSGT00390000008787.b	ENSGT00390000008978 #28	ENSGT00940000158482 #29	ENSGT00940000157425.B #31	ENSGT00730000111063 #24	ENSGT00940000164222	ENSGT01030000234641.a.b #21	ENSGT00940000153430.a.b #22	ENSGT00940000155493	ENSGT00940000165086.b	ENSGT00940000157051	ENSGT00940000162185	ENSGT00720000108792.A	ENSGT00940000175717	ENSGT00940000156782.c	ENSGT00940000161552	ENSGT00940000161907	ENSGT00950000183132.B	ENSGT00390000003094	ENSGT00950000183037.B.a	ENSGT00950000182992.a.b.a.a	ENSGT00940000157736	ENSGT01100000263502.A.a.b
Ballan wrasse	MODERN SPECIES	251			si:dkey-192p21.6 (ENSLBEG00000023783)	pcbd1 (ENSLBEG00000023764)	sgpl1 (ENSLBEG00000023716)	neurog3 (ENSLBEG00000023686)	pdlim1 (ENSLBEG00000023660)	ENSLBEG00000023552	ENSLBEG00000023477	fam204a (ENSLBEG00000023457) #28	RAB11FIP2 (ENSLBEG00000023437) #29	emx2 (ENSLBEG00000023421) #31	eif3s10 (ENSLBEG00000023394) #24	dennd10 (ENSLBEG00000023353)	sfxn4 (ENSLBEG00000023320) #21	prdx3 (ENSLBEG00000023267) #22	tm9sf3 (ENSLBEG00000023217)	MOCOS (ENSLBEG00000023165)	zgc:110045 (ENSLBEG00000023074)	vwc2 (ENSLBEG00000023043)	ikzf1 (ENSLBEG00000023024)	fignl1 (ENSLBEG00000023009)	ttl (ENSLBEG00000022981)	ENSLBEG00000022960	EML4 (ENSLBEG00000022841)	tspan14 (ENSLBEG00000022753)	ENSLBEG00000022740	KCNG3 (ENSLBEG00000022725)	QKI (ENSLBEG00000022702)	prkn (ENSLBEG00000022622)	ENSLBEG00000022556
Eupecaria_B	ANCESTRAL SPECIES	26	ENSGT00940000158499	ENSGT00390000001491.b	ENSGT00390000007221.a.b	ENSGT00390000000046	ENSGT00940000163077	ENSGT00940000155525	ENSGT00940000158658	ENSGT00940000176198	ENSGT00390000008787.b	ENSGT00390000008978 #28	ENSGT00940000158482 #29	ENSGT00940000157425.B #31	ENSGT00730000111063 #24	ENSGT00940000164222	ENSGT01030000234641.a.b #21	ENSGT00940000153430.a.b #22	ENSGT00940000155493	ENSGT00940000165086.b	ENSGT00940000157051	ENSGT00940000162185	ENSGT00720000108792.A	ENSGT00940000175717	ENSGT00940000156782.c	ENSGT00940000161552	ENSGT00940000161907	ENSGT00950000183132.B	ENSGT00390000003094	ENSGT00950000183037.B.a	ENSGT00950000182992.a.b.a.a	ENSGT00940000157736	ENSGT01100000263502.A.a.b
Perciformes	ANCESTRAL SPECIES	17	ENSGT00940000158499	ENSGT00390000001491.b	ENSGT00390000007221.a.b	ENSGT00390000000046	ENSGT00940000163077	ENSGT00940000155525	ENSGT00940000158658	ENSGT00940000176198	ENSGT00390000008787.b	ENSGT00390000008978 #28	ENSGT00940000158482 #29	ENSGT00940000157425.B #31	ENSGT00730000111063 #24	ENSGT00940000164222	ENSGT01030000234641.a.b #21	ENSGT00940000153430.a.b #22	ENSGT00940000155493	ENSGT00940000165086.b	ENSGT00940000157051	ENSGT00940000162185	ENSGT00720000108792.A	ENSGT00940000175717	ENSGT00940000156782.c	ENSGT00940000161552	ENSGT00940000161907	ENSGT00950000183132.B	ENSGT00390000003094	ENSGT00950000183037.B.a	ENSGT00950000182992.a.b.a.a	ENSGT00940000157736	ENSGT01100000263502.A.a.b
Cottioidei	ANCESTRAL SPECIES	36	ENSGT00940000158499	ENSGT00390000001491.b	ENSGT00390000007221.a.b	ENSGT00390000000046	ENSGT00940000163077	ENSGT00940000155525	ENSGT00940000158658	ENSGT00900000142007	ENSGT00390000008787.b	ENSGT00390000008978 #28	ENSGT00940000158482 #29	ENSGT00940000157425.B #31	ENSGT00730000111063 #24	ENSGT00940000164222	ENSGT01030000234641.a.b #21	ENSGT00940000153430.a.b #22	ENSGT00940000155493	ENSGT00940000165086.b	ENSGT00940000157051	ENSGT00940000162185	ENSGT00720000108792.A	ENSGT00940000175717	ENSGT00940000156782.c	ENSGT00940000161552	ENSGT00940000161907	ENSGT00950000183132.B	ENSGT00390000003094	ENSGT00950000183037.B.a	ENSGT00950000182992.a.b.a.a	ENSGT00940000157736	ENSGT01100000263502.A.a.b
Lumpfish	MODERN SPECIES	6	ret (ENSCLMG00005006182)	si:dkey-192p21.6 (ENSCLMG00005006250)	pcbd1 (ENSCLMG00005006256)	sgpl1 (ENSCLMG00005006278)	neurog3 (ENSCLMG00005007993)	pdlim1 (ENSCLMG00005007996)	SORBS1 (ENSCLMG00005008000)	ENSCLMG00005008003	PIK3AP1 (ENSCLMG00005008004)	fam204a (ENSCLMG00005008007) #28	RAB11FIP2 (ENSCLMG00005008008) #29	emx2 (ENSCLMG00005008009) #31	eif3s10 (ENSCLMG00005008010) #24	dennd10 (ENSCLMG00005008018)	sfxn4 (ENSCLMG00005008019) #21	prdx3 (ENSCLMG00005008023) #22	tm9sf3 (ENSCLMG00005008031)	si:ch211-117n7.7 (ENSCLMG00005008046)	MOCOS (ENSCLMG00005008050)	zgc:110045 (ENSCLMG00005008053)	vwc2 (ENSCLMG00005008056)	ENSCLMG00005008063	ikzf1 (ENSCLMG00005008068)	ttl (ENSCLMG00005008150)	degs1 (ENSCLMG00005008151)	nvl (ENSCLMG00005008153)	ENSCLMG00005008157	tk2 (ENSCLMG00005008159)	ENSCLMG00005008162	aprt (ENSCLMG00005008163)	CDT1 (ENSCLMG00005008165)
Stickleback	MODERN SPECIES	6	mcmbp (ENSGACG00000003332) #11	sec23ip (ENSGACG00000003308) #10	csgalnact2 (ENSGACG00000003302)	ret (ENSGACG00000003269)	pcbd1 (ENSGACG00000003259)	sgpl1 (ENSGACG00000003253)	pdlim1 (ENSGACG00000003243)	SORBS1 (ENSGACG00000003233)	ENSGACG00000003216	fam204a (ENSGACG00000003212) #28	RAB11FIP2 (ENSGACG00000003208) #29	emx2 (ENSGACG00000003199) #31	eif3s10 (ENSGACG00000003191) #24	dennd10 (ENSGACG00000003174)	sfxn4 (ENSGACG00000003163) #21	prdx3 (ENSGACG00000003133) #22	tm9sf3 (ENSGACG00000003087)	si:ch211-117n7.7 (ENSGACG00000003077)	MOCOS (ENSGACG00000003055)	zgc:110045 (ENSGACG00000003044)	vwc2 (ENSGACG00000003041)	ikzf1 (ENSGACG00000003033)	fignl1 (ENSGACG00000003032)	ttl (ENSGACG00000003026)	ENSGACG00000003023	ENSGACG00000003019	polr1b (ENSGACG00000003012)	nanp (ENSGACG00000003009)	cyp1b1 (ENSGACG00000003007)	ENSGACG00000003000	cdc42ep3 (ENSGACG00000002988)
Perciformes_a	ANCESTRAL SPECIES	16	ENSGT00940000158499	ENSGT00390000001491.b	ENSGT00390000007221.a.b	ENSGT00390000000046	ENSGT00940000163077	ENSGT00940000155525	ENSGT00940000158658	ENSGT00940000176198	ENSGT00390000008787.b	ENSGT00390000008978 #28	ENSGT00940000158482 #29	ENSGT00940000157425.B #31	ENSGT00730000111063 #24	ENSGT00940000164222	ENSGT01030000234641.a.b #21	ENSGT00940000153430.a.b #22	ENSGT00940000155493	ENSGT00940000165086.b	ENSGT00940000157051	ENSGT00940000162185	ENSGT00720000108792.A	ENSGT00940000175717	ENSGT00940000156782.c	ENSGT00940000161552	ENSGT00940000161907
Pike perch	MODERN SPECIES	62	ENSSLUG00000002268	si:dkey-192p21.6 (ENSSLUG00000002275)	pcbd1 (ENSSLUG00000002285)	sgpl1 (ENSSLUG00000002319)	ENSSLUG00000002417	pdlim1 (ENSSLUG00000002422)	ENSSLUG00000002453	ENSSLUG00000002535	ENSSLUG00000002546	fam204a (ENSSLUG00000002564) #28	RAB11FIP2 (ENSSLUG00000002568) #29	emx2 (ENSSLUG00000002572) #31	eif3s10 (ENSSLUG00000002603) #24	dennd10 (ENSSLUG00000002651)	sfxn4 (ENSSLUG00000002655) #21	prdx3 (ENSSLUG00000002671) #22	tm9sf3 (ENSSLUG00000002739)	si:ch211-117n7.7 (ENSSLUG00000002884)	MOCOS (ENSSLUG00000002934)	zgc:110045 (ENSSLUG00000002981)	vwc2 (ENSSLUG00000003071)	ENSSLUG00000003128	ikzf1 (ENSSLUG00000003171)	fignl1 (ENSSLUG00000003392)	ttl (ENSSLUG00000003402)	ENSSLUG00000003414	inaa (ENSSLUG00000003433)	pcgf6 (ENSSLUG00000003502)	ENSSLUG00000003514	XPO1 (ENSSLUG00000003545)	SANBR (ENSSLUG00000003658)
Channel bull blenny	MODERN SPECIES	6	csgalnact2 (ENSCGOG00000007371)	ret (ENSCGOG00000007394)	ENSCGOG00000007819	sgpl1 (ENSCGOG00000007856)	pcbd1 (ENSCGOG00000009151)	neurog3 (ENSCGOG00000009182)	pdlim1 (ENSCGOG00000009193)	ENSCGOG00000009215	ENSCGOG00000009289	fam204a (ENSCGOG00000009294) #28	RAB11FIP2 (ENSCGOG00000009297) #29	emx2 (ENSCGOG00000009300) #31	eif3s10 (ENSCGOG00000009320) #24	dennd10 (ENSCGOG00000010125)	sfxn4 (ENSCGOG00000010134) #21	prdx3 (ENSCGOG00000010139) #22	tm9sf3 (ENSCGOG00000010151)	si:ch211-117n7.7 (ENSCGOG00000010372)	MOCOS (ENSCGOG00000010377)	zgc:110045 (ENSCGOG00000010396)	vwc2 (ENSCGOG00000010403)	ENSCGOG00000010404	ikzf1 (ENSCGOG00000010414)	fignl1 (ENSCGOG00000010491)	ttl (ENSCGOG00000010526)	b3gat2 (ENSCGOG00000010539)	ENSCGOG00000010551	ENSCGOG00000010576	ENSCGOG00000010628	mlh1 (ENSCGOG00000010656)	lrrfip2 (ENSCGOG00000011075)
Eupecaria_C	ANCESTRAL SPECIES	28	ENSGT01050000244968.d	ENSGT00940000158499	ENSGT00390000001491.b	ENSGT00390000007221.a.b	ENSGT00390000000046	ENSGT00940000163077	ENSGT00940000155525	ENSGT00940000158658	ENSGT00390000008787.b	ENSGT00390000008978 #28	ENSGT00940000158482 #29	ENSGT00940000157425.B #31	ENSGT00730000111063 #24	ENSGT00940000164222	ENSGT01030000234641.a.b #21	ENSGT00940000153430.a.b #22	ENSGT00940000155493	ENSGT00940000165086.b	ENSGT00940000157051	ENSGT00940000162185	ENSGT00720000108792.A	ENSGT00940000175717	ENSGT00940000156782.c	ENSGT00940000161552	ENSGT00940000161907	ENSGT00390000011010.a.b	ENSGT00940000158924	ENSGT00940000158284	ENSGT00940000159342.b	ENSGT00800000124177	ENSGT00530000063564.a
Gilthead seabream	MODERN SPECIES	6	csgalnact2 (ENSSAUG00010022185)	ret (ENSSAUG00010021734)	si:dkey-192p21.6 (ENSSAUG00010021728)	pcbd1 (ENSSAUG00010021726)	sgpl1 (ENSSAUG00010021710)	neurog3 (ENSSAUG00010021706)	pdlim1 (ENSSAUG00010021705)	ENSSAUG00010021701	ENSSAUG00010021699	fam204a (ENSSAUG00010021697) #28	RAB11FIP2 (ENSSAUG00010021696) #29	emx2 (ENSSAUG00010021695) #31	eif3s10 (ENSSAUG00010021686) #24	dennd10 (ENSSAUG00010021677)	sfxn4 (ENSSAUG00010021670) #21	PRDX3 (ENSSAUG00010021664) #22	tm9sf3 (ENSSAUG00010021568)	si:ch211-117n7.7 (ENSSAUG00010021556)	MOCOS (ENSSAUG00010021527)	zgc:110045 (ENSSAUG00010021518)	vwc2 (ENSSAUG00010021515)	ENSSAUG00010021514	ikzf1 (ENSSAUG00010021495)	fignl1 (ENSSAUG00010021493)	ttl (ENSSAUG00010021491)	COX5b1 (ENSSAUG00010021488)	HERC4 (ENSSAUG00010021383)	ENSSAUG00010021379	ENSSAUG00010021378	mlh1 (ENSSAUG00010021341)	lrrfip2 (ENSSAUG00010021116)
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	32	ENSGT01050000244968.d	ENSGT00940000158499	ENSGT00390000001491.b	ENSGT00390000007221.a.b	ENSGT00390000000046	ENSGT00940000163077	ENSGT00940000155525	ENSGT00940000158658	ENSGT00390000008787.b	ENSGT00390000008978 #28	ENSGT00940000158482 #29	ENSGT00940000157425.B #31	ENSGT00730000111063 #24	ENSGT00940000164222	ENSGT01030000234641.a.b #21	ENSGT00940000153430.a.b #22	ENSGT00940000155493	ENSGT00940000165086.b	ENSGT00940000157051	ENSGT00940000162185	ENSGT00720000108792.A	ENSGT00940000175717	ENSGT00940000156782.c	ENSGT00940000161552	ENSGT00940000161907	ENSGT00390000011010.a.b	ENSGT00940000158924	ENSGT00940000158284	ENSGT00940000159342.b	ENSGT00800000124177	ENSGT00530000063564.a
Large yellow croaker	MODERN SPECIES	53	csgalnact2 (ENSLCRG00005020333)	ret (ENSLCRG00005020306)	ENSLCRG00005020300	pcbd1 (ENSLCRG00005020299)	sgpl1 (ENSLCRG00005020256)	neurog3 (ENSLCRG00005020252)	pdlim1 (ENSLCRG00005020249)	SORBS1 (ENSLCRG00005020215)	ENSLCRG00005020209	fam204a (ENSLCRG00005020207) #28	RAB11FIP2 (ENSLCRG00005020206) #29	emx2 (ENSLCRG00005020204) #31	eif3s10 (ENSLCRG00005020196) #24	dennd10 (ENSLCRG00005020193)	sfxn4 (ENSLCRG00005020188) #21	prdx3 (ENSLCRG00005020184) #22	tm9sf3 (ENSLCRG00005020183)	si:ch211-117n7.7 (ENSLCRG00005020181)	MOCOS (ENSLCRG00005020179)	zgc:110045 (ENSLCRG00005020178)	vwc2 (ENSLCRG00005020177)	ENSLCRG00005020174	ikzf1 (ENSLCRG00005020169)	fignl1 (ENSLCRG00005020168)	ttl (ENSLCRG00005020167)
European seabass	MODERN SPECIES	1	csgalnact2 (ENSDLAG00005006679)	ret (ENSDLAG00005006733)	si:dkey-192p21.6 (ENSDLAG00005007174)	pcbd1 (ENSDLAG00005007233)	sgpl1 (ENSDLAG00005007270)	ENSDLAG00005008253	pdlim1 (ENSDLAG00005008259)	ENSDLAG00005008269	ENSDLAG00005008287	fam204a (ENSDLAG00005031567) #28	ENSDLAG00005008323 #29	emx2 (ENSDLAG00005034417) #31	eif3s10 (ENSDLAG00005008367) #24	dennd10 (ENSDLAG00005008498)	sfxn4 (ENSDLAG00005008530) #21	prdx3 (ENSDLAG00005008566) #22	tm9sf3 (ENSDLAG00005008617)	si:ch211-117n7.7 (ENSDLAG00005009430)	ENSDLAG00005009440	zgc:110045 (ENSDLAG00005009609)	vwc2 (ENSDLAG00005009628)	ikzf1 (ENSDLAG00005029019)	fignl1 (ENSDLAG00005034773)	ttl (ENSDLAG00005009752)	ENSDLAG00005009783	ENSDLAG00005009832	ENSDLAG00005030057	ENSDLAG00005010085	ENSDLAG00005010097	mlh1 (ENSDLAG00005010104)	lrrfip2 (ENSDLAG00005010250)
Percomorphaceae_D	ANCESTRAL SPECIES	19	ENSGT00390000001491.b	ENSGT00390000007221.a.b	ENSGT00390000000046	ENSGT00940000163077	ENSGT00940000155525	ENSGT00900000142007	ENSGT00940000158658	ENSGT00940000176198	ENSGT00390000008787.b	ENSGT00390000008978 #28	ENSGT00940000158482 #29	ENSGT00940000157425.B #31	ENSGT00730000111063 #24	ENSGT00940000164222	ENSGT01030000234641.a.b #21	ENSGT00940000153430.a.b #22	ENSGT00940000155493	ENSGT00940000165086.b	ENSGT00940000157051	ENSGT00940000162185	ENSGT00720000108792.A	ENSGT00940000175717	ENSGT00940000156782.c	ENSGT00940000161552	ENSGT00940000161907	ENSGT00950000183132.B	ENSGT00390000003094	ENSGT00950000183037.B.a	ENSGT00950000182992.a.b.a.a	ENSGT00940000157736	ENSGT01100000263502.A.a.b
Anabantaria	ANCESTRAL SPECIES	17	ENSGT00940000158499	ENSGT00390000001491.b	ENSGT00390000007221.a.b	ENSGT00390000000046	ENSGT00940000163077	ENSGT00940000155525	ENSGT00940000158658	ENSGT00900000142007	ENSGT00390000008787.b	ENSGT00390000008978 #28	ENSGT00940000158482 #29	ENSGT00940000157425.B #31	ENSGT00730000111063 #24	ENSGT00940000164222	ENSGT01030000234641.a.b #21	ENSGT00940000153430.a.b #22	ENSGT00940000155493	ENSGT00940000165086.b	ENSGT00940000157051	ENSGT00940000162185	ENSGT00720000108792.A	ENSGT00940000175717	ENSGT00940000156782.c	ENSGT00940000161552	ENSGT00940000161907	ENSGT00950000183132.B	ENSGT00390000003094	ENSGT00950000183037.B.a	ENSGT00950000182992.a.b.a.a	ENSGT00940000157736	ENSGT01100000263502.A.a.b
Zig-zag eel	MODERN SPECIES	6	ret (ENSMAMG00000013635)	si:dkey-192p21.6 (ENSMAMG00000013731)	pcbd1 (ENSMAMG00000013741)	sgpl1 (ENSMAMG00000013758)	neurog3 (ENSMAMG00000028087)	pdlim1 (ENSMAMG00000013929)	ENSMAMG00000013987	ENSMAMG00000014025	ENSMAMG00000014048	fam204a (ENSMAMG00000027806) #28	ENSMAMG00000014084 #29	emx2 (ENSMAMG00000014095) #31	eif3s10 (ENSMAMG00000014137) #24	dennd10 (ENSMAMG00000014210)	sfxn4 (ENSMAMG00000014262) #21	prdx3 (ENSMAMG00000014292) #22	tm9sf3 (ENSMAMG00000028440)	si:ch211-117n7.7 (ENSMAMG00000014340)	ENSMAMG00000014354	zgc:110045 (ENSMAMG00000014389)	vwc2 (ENSMAMG00000026396)	ENSMAMG00000014425	ikzf1 (ENSMAMG00000027086)	fignl1 (ENSMAMG00000014483)	ttl (ENSMAMG00000014493)	ENSMAMG00000014549	ENSMAMG00000015319	ENSMAMG00000015405	ENSMAMG00000015417	mlh1 (ENSMAMG00000015440)	lrrfip2 (ENSMAMG00000015529)
Anabantoidei	ANCESTRAL SPECIES	17	ENSGT00940000158499	ENSGT00390000001491.b	ENSGT00390000007221.a.b	ENSGT00390000000046	ENSGT00940000163077	ENSGT00940000155525	ENSGT00900000142007	ENSGT00940000158658	ENSGT00390000008787.b	ENSGT00390000008978 #28	ENSGT00940000158482 #29	ENSGT00940000157425.B #31	ENSGT00730000111063 #24	ENSGT00940000164222	ENSGT01030000234641.a.b #21	ENSGT00940000153430.a.b #22	ENSGT00940000155493	ENSGT00940000165086.b	ENSGT00940000157051	ENSGT00940000162185	ENSGT00720000108792.A	ENSGT00940000175717	ENSGT00940000156782.c	ENSGT00940000161552	ENSGT00940000161907	ENSGT00950000183132.B	ENSGT00390000003094	ENSGT00950000183037.B.a	ENSGT00950000182992.a.b.a.a	ENSGT00940000157736	ENSGT01100000263502.A.a.b
Climbing perch	MODERN SPECIES	6	ret (ENSATEG00000011958)	si:dkey-192p21.6 (ENSATEG00000011916)	pcbd1 (ENSATEG00000011895)	sgpl1 (ENSATEG00000011854)	neurog3 (ENSATEG00000011737)	pdlim1 (ENSATEG00000011713)	ENSATEG00000011679	ENSATEG00000011627	ENSATEG00000011576	fam204a (ENSATEG00000011567) #28	ENSATEG00000011555 #29	emx2 (ENSATEG00000011381) #31	eif3s10 (ENSATEG00000011354) #24	dennd10 (ENSATEG00000026994)	sfxn4 (ENSATEG00000011299) #21	prdx3 (ENSATEG00000028795) #22	tm9sf3 (ENSATEG00000011231)	si:ch211-117n7.7 (ENSATEG00000011219)	ENSATEG00000011211	zgc:110045 (ENSATEG00000011191)	vwc2 (ENSATEG00000011180)	ENSATEG00000011148	ikzf1 (ENSATEG00000011105)	fignl1 (ENSATEG00000011087)	ttl (ENSATEG00000011034)	polr1b (ENSATEG00000010957)	nanp (ENSATEG00000010941)	cyp1b1 (ENSATEG00000010933)	ENSATEG00000029165	cdc42ep3 (ENSATEG00000010904)	opn3 (ENSATEG00000010893)
Siamese fighting fish	MODERN SPECIES	6	ret (ENSBSLG00000007693)	ENSBSLG00000008423	si:dkey-192p21.6 (ENSBSLG00000008439)	pcbd1 (ENSBSLG00000008469)	sgpl1 (ENSBSLG00000008547)	ENSBSLG00000008800	pdlim1 (ENSBSLG00000008804)	ENSBSLG00000008836	ENSBSLG00000008893	fam204a (ENSBSLG00000009000) #28	RAB11FIP2 (ENSBSLG00000009037) #29	emx2 (ENSBSLG00000009061) #31	eif3s10 (ENSBSLG00000009109) #24	dennd10 (ENSBSLG00000009922)	sfxn4 (ENSBSLG00000009936) #21	prdx3 (ENSBSLG00000010001) #22	tm9sf3 (ENSBSLG00000010059)	si:ch211-117n7.7 (ENSBSLG00000010289)	zgc:110045 (ENSBSLG00000010328)	vwc2 (ENSBSLG00000010334)	ENSBSLG00000010575	ikzf1 (ENSBSLG00000010675)	fignl1 (ENSBSLG00000010853)	ttl (ENSBSLG00000010860)	cox5b2 (ENSBSLG00000010901)	HERC4 (ENSBSLG00000010915)	ENSBSLG00000010943	ENSBSLG00000010965	mlh1 (ENSBSLG00000010981)	lrrfip2 (ENSBSLG00000011140)	dact2 (ENSBSLG00000011354)
Carangaria	ANCESTRAL SPECIES	19	ENSGT00940000158499	ENSGT00390000001491.b	ENSGT00390000007221.a.b	ENSGT00390000000046	ENSGT00940000163077	ENSGT00940000155525	ENSGT00940000158658	ENSGT00940000176198	ENSGT00390000008787.b	ENSGT00390000008978 #28	ENSGT00940000158482 #29	ENSGT00940000157425.B #31	ENSGT00730000111063 #24	ENSGT00940000164222	ENSGT01030000234641.a.b #21	ENSGT00940000153430.a.b #22	ENSGT00940000155493	ENSGT00940000165086.b	ENSGT00940000157051	ENSGT00940000162185	ENSGT00720000108792.A	ENSGT00940000175717	ENSGT00940000156782.c	ENSGT00940000161552	ENSGT00940000161907	ENSGT00950000183132.B	ENSGT00390000003094	ENSGT00950000183037.B.a	ENSGT00950000182992.a.b.a.a	ENSGT00940000157736	ENSGT01100000263502.A.a.b
Carangaria_A	ANCESTRAL SPECIES	31	ENSGT00940000158499	ENSGT00390000001491.b	ENSGT00390000007221.a.b	ENSGT00390000000046.l	ENSGT00940000163077	ENSGT00940000155525	ENSGT00940000158658	ENSGT00940000176198	ENSGT00390000008787.b	ENSGT00390000008978 #28	ENSGT00940000158482 #29	ENSGT00940000157425.B #31	ENSGT00730000111063 #24	ENSGT00940000164222	ENSGT01030000234641.a.b #21	ENSGT00940000153430.a.b #22	ENSGT00940000155493	ENSGT00940000165086.b	ENSGT00940000157051	ENSGT00940000162185	ENSGT00720000108792.A	ENSGT00940000175717	ENSGT00940000156782.c	ENSGT00940000161552	ENSGT00940000161907	ENSGT00950000183132.B	ENSGT00390000003094	ENSGT00950000183037.B.a	ENSGT00950000182992.a.b.a.a	ENSGT00940000157736	ENSGT01100000263502.A.a.b
Seriola	ANCESTRAL SPECIES	14	ENSGT00940000158499	ENSGT00390000001491.b	ENSGT00390000007221.a.b	ENSGT00390000000046.l	ENSGT00940000163077	ENSGT00940000155525	ENSGT00940000158658	ENSGT00940000176198	ENSGT00390000008787.b	ENSGT00390000008978 #28	ENSGT00940000158482 #29	ENSGT00940000157425.B #31	ENSGT00730000111063 #24	ENSGT00940000164222	ENSGT01030000234641.a.b #21	ENSGT00940000153430.a.b #22	ENSGT00940000155493	ENSGT00940000165086.b	ENSGT00940000157051	ENSGT00940000162185	ENSGT00720000108792.A	ENSGT00940000156782.c	ENSGT00940000161552	ENSGT00940000161907	ENSGT00950000183132.B	ENSGT00390000003094	ENSGT00950000183037.B.a	ENSGT00950000182992.a.b.a.a	ENSGT00940000157736	ENSGT01100000263502.A.a.b	ENSGT00390000000747
Greater amberjack	MODERN SPECIES	30	si:dkey-192p21.6 (ENSSDUG00000018383)	pcbd1 (ENSSDUG00000018415)	sgpl1 (ENSSDUG00000018447)	ENSSDUG00000018566	neurog3 (ENSSDUG00000018883)	pdlim1 (ENSSDUG00000018897)	ENSSDUG00000018930	ENSSDUG00000019025	ENSSDUG00000019035	fam204a (ENSSDUG00000019089) #28	RAB11FIP2 (ENSSDUG00000019098) #29	emx2 (ENSSDUG00000019125) #31	eif3s10 (ENSSDUG00000019140) #24	dennd10 (ENSSDUG00000019220)	sfxn4 (ENSSDUG00000019244) #21	prdx3 (ENSSDUG00000019255) #22	tm9sf3 (ENSSDUG00000019276)	si:ch211-117n7.7 (ENSSDUG00000019323)	MOCOS (ENSSDUG00000019347)	zgc:110045 (ENSSDUG00000019371)	vwc2 (ENSSDUG00000019382)	ikzf1 (ENSSDUG00000019397)	fignl1 (ENSSDUG00000019441)	ttl (ENSSDUG00000019448)	polr1b (ENSSDUG00000019471)	nanp (ENSSDUG00000019522)	cyp1b1 (ENSSDUG00000019527)	ENSSDUG00000019535	cdc42ep3 (ENSSDUG00000019571)	opn3 (ENSSDUG00000019575)	kmo (ENSSDUG00000019590)
Yellowtail amberjack	MODERN SPECIES	3109	ret (ENSSLDG00000020309)	si:dkey-192p21.6 (ENSSLDG00000020391)	pcbd1 (ENSSLDG00000020420)	sgpl1 (ENSSLDG00000020451)	neurog3 (ENSSLDG00000020510)	pdlim1 (ENSSLDG00000020522)	ENSSLDG00000020563	ENSSLDG00000020744	ENSSLDG00000020764	fam204a (ENSSLDG00000020805) #28	RAB11FIP2 (ENSSLDG00000020841) #29	emx2 (ENSSLDG00000020855) #31	eif3s10 (ENSSLDG00000020888) #24	dennd10 (ENSSLDG00000020907)	sfxn4 (ENSSLDG00000020933) #21	prdx3 (ENSSLDG00000020952) #22	tm9sf3 (ENSSLDG00000020980)	si:ch211-117n7.7 (ENSSLDG00000021013)	MOCOS (ENSSLDG00000021034)	zgc:110045 (ENSSLDG00000021064)	vwc2 (ENSSLDG00000021109)	ikzf1 (ENSSLDG00000021122)	fignl1 (ENSSLDG00000021151)	ttl (ENSSLDG00000021154)	ENSSLDG00000021164	nanp (ENSSLDG00000021180)	cyp1b1 (ENSSLDG00000021191)	ENSSLDG00000021205	cdc42ep3 (ENSSLDG00000021250)	opn3 (ENSSLDG00000021258)	kmo (ENSSLDG00000021276)
Barramundi perch	DUPLICATION
Barramundi perch	MODERN SPECIES	206	csgalnact2 (ENSLCAG00010008201)	ret (ENSLCAG00010008233)	si:dkey-192p21.6 (ENSLCAG00010008294)	pcbd1 (ENSLCAG00010008304)	sgpl1 (ENSLCAG00010008367)	neurog3 (ENSLCAG00010008522)	pdlim1 (ENSLCAG00010008527)	ENSLCAG00010008534	ENSLCAG00010008540	fam204a (ENSLCAG00010008541) #28	RAB11FIP2 (ENSLCAG00010008543) #29	emx2 (ENSLCAG00010008545) #31	eif3s10 (ENSLCAG00010008579) #24	dennd10 (ENSLCAG00010008741)	sfxn4 (ENSLCAG00010008745) #21	prdx3 (ENSLCAG00010008761) #22	tm9sf3 (ENSLCAG00010008806)	si:ch211-117n7.7 (ENSLCAG00010008860)	MOCOS (ENSLCAG00010008888)	zgc:110045 (ENSLCAG00010008908)	vwc2 (ENSLCAG00010008913)	ENSLCAG00010008917	ikzf1 (ENSLCAG00010008924)	fignl1 (ENSLCAG00010008936)	ttl (ENSLCAG00010008939)	polr1b (ENSLCAG00010008949)	nanp (ENSLCAG00010008955)	cyp1b1 (ENSLCAG00010008957)	ENSLCAG00010008958	cdc42ep3 (ENSLCAG00010008960)	opn3 (ENSLCAG00010008962)
Barramundi perch	MODERN SPECIES	1490																prdx3 (ENSLCAG00010020368) #22
Pleuronectoidei	ANCESTRAL SPECIES	28	ENSGT01050000244968.d	ENSGT00940000158499	ENSGT00390000001491.b	ENSGT00390000007221.a.b	ENSGT00390000000046	ENSGT00940000163077	ENSGT00940000155525	ENSGT00940000158658	ENSGT00390000008787.b	ENSGT00390000008978 #28	ENSGT00940000158482 #29	ENSGT00940000157425.B #31	ENSGT00730000111063 #24	ENSGT00940000164222	ENSGT01030000234641.a.b #21	ENSGT00940000153430.a.b #22	ENSGT00940000155493	ENSGT00940000165086.b	ENSGT00940000157051	ENSGT00940000162185	ENSGT00720000108792.A	ENSGT00940000156782.c	ENSGT00940000161552	ENSGT00940000161907	ENSGT00950000183132.B	ENSGT00390000003094	ENSGT00950000183037.B.a	ENSGT00950000182992.a.b.a.a	ENSGT00940000157736	ENSGT01100000263502.A.a.b	ENSGT00390000000747
Turbot	MODERN SPECIES	6	csgalnact2 (ENSSMAG00000012955)	ret (ENSSMAG00000012975)	si:dkey-192p21.6 (ENSSMAG00000013015)	pcbd1 (ENSSMAG00000024076)	sgpl1 (ENSSMAG00000013040)	neurog3 (ENSSMAG00000013097)	pdlim1 (ENSSMAG00000013116)	ENSSMAG00000013146	ENSSMAG00000013274	fam204a (ENSSMAG00000013322) #28	ENSSMAG00000013336 #29	emx2 (ENSSMAG00000013356) #31	eif3s10 (ENSSMAG00000013380) #24	dennd10 (ENSSMAG00000013438)	sfxn4 (ENSSMAG00000024831) #21	prdx3 (ENSSMAG00000013488) #22	tm9sf3 (ENSSMAG00000013465)	ENSSMAG00000013516	zgc:110045 (ENSSMAG00000013541)	vwc2 (ENSSMAG00000013603)	ikzf1 (ENSSMAG00000013618)	fignl1 (ENSSMAG00000013671)	ttl (ENSSMAG00000013675)	polr1b (ENSSMAG00000013682)	nanp (ENSSMAG00000013716)	cyp1b1 (ENSSMAG00000013726)	ENSSMAG00000013735	cdc42ep3 (ENSSMAG00000013759)	opn3 (ENSSMAG00000013763)	kmo (ENSSMAG00000013784)	ide (ENSSMAG00000013822)
Tongue sole	MODERN SPECIES	3	tmem254 (ENSCSEG00000010559)	ENSCSEG00000010547	STK32C (ENSCSEG00000010530)	PWWP2B (ENSCSEG00000010521)	INPP5A (ENSCSEG00000010496)	nkx6.2 (ENSCSEG00000010490)	valopa (ENSCSEG00000010484)	ENSCSEG00000010456	ENSCSEG00000010432	ADGRA1 (ENSCSEG00000010321)	KNDC1 (ENSCSEG00000010219)	ENSCSEG00000010212	vox (ENSCSEG00000010208)	dennd10 (ENSCSEG00000010175)	sfxn4 (ENSCSEG00000010159) #21	prdx3 (ENSCSEG00000010149) #22	tm9sf3 (ENSCSEG00000010093)	si:ch211-117n7.7 (ENSCSEG00000010068)	zgc:110045 (ENSCSEG00000010020)	MOCOS (ENSCSEG00000009978)	vwc2 (ENSCSEG00000009963)	ikzf1 (ENSCSEG00000008620)	fignl1 (ENSCSEG00000008604)	ttl (ENSCSEG00000008600)	polr1b (ENSCSEG00000008564)	nanp (ENSCSEG00000008595)	cyp1b1 (ENSCSEG00000008557)	ENSCSEG00000008531	cdc42ep3 (ENSCSEG00000008521)	opn3 (ENSCSEG00000008514)	kmo (ENSCSEG00000008503)
Pinecone sodierfish	MODERN SPECIES	6	ret (ENSMMDG00005011682)	si:dkey-192p21.6 (ENSMMDG00005011686)	pcbd1 (ENSMMDG00005011701)	sgpl1 (ENSMMDG00005011708)	neurog3 (ENSMMDG00005011712)	pdlim1 (ENSMMDG00005011716)	ENSMMDG00005011723	ENSMMDG00005011726	PIK3AP1 (ENSMMDG00005011733)	fam204a (ENSMMDG00005011942) #28	RAB11FIP2 (ENSMMDG00005011948) #29	emx2 (ENSMMDG00005011949) #31	eif3s10 (ENSMMDG00005011982) #24	dennd10 (ENSMMDG00005014397)	sfxn4 (ENSMMDG00005014408) #21	prdx3 (ENSMMDG00005014464) #22	tm9sf3 (ENSMMDG00005014626)	si:ch211-117n7.7 (ENSMMDG00005016211)	MOCOS (ENSMMDG00005016217)	zgc:110045 (ENSMMDG00005016225)	vwc2 (ENSMMDG00005016229)	ENSMMDG00005016232	ikzf1 (ENSMMDG00005016243)	fignl1 (ENSMMDG00005016483)	ttl (ENSMMDG00005016486)	polr1b (ENSMMDG00005016502)	nanp (ENSMMDG00005016582)	cyp1b1 (ENSMMDG00005016602)	ENSMMDG00005016825	cdc42ep3 (ENSMMDG00005016828)	opn3 (ENSMMDG00005016831)
Cod	MODERN SPECIES	6	bag3 (ENSGMOG00000032802) #13	inpp5f (ENSGMOG00000005525) #12	mcmbp (ENSGMOG00000005497) #11	sec23ip (ENSGMOG00000005456) #10	csgalnact2 (ENSGMOG00000005443)	ret (ENSGMOG00000005386)	si:dkey-192p21.6 (ENSGMOG00000005331)	pcbd1 (ENSGMOG00000025589)	ENSGMOG00000027100	ENSGMOG00000006202	fam204a (ENSGMOG00000006195) #28	ENSGMOG00000031570 #31	eif3s10 (ENSGMOG00000006124) #24	dennd10 (ENSGMOG00000006109)	sfxn4 (ENSGMOG00000006079) #21	prdx3 (ENSGMOG00000006068) #22	tm9sf3 (ENSGMOG00000006049)	si:ch211-117n7.7 (ENSGMOG00000031760)	ENSGMOG00000005979	zgc:110045 (ENSGMOG00000005953)	vwc2 (ENSGMOG00000027868)	ikzf1 (ENSGMOG00000005918)	fignl1 (ENSGMOG00000029024)	ttl (ENSGMOG00000005880)	polr1b (ENSGMOG00000005847)	ENSGMOG00000027466	nanp (ENSGMOG00000005831)	cyp1b1 (ENSGMOG00000006842)	ENSGMOG00000005663	ENSGMOG00000023403	ENSGMOG00000027915
Protacanthopterygii	ANCESTRAL SPECIES	39	ENSGT00940000158499	ENSGT00390000001491.b	ENSGT00390000007221.a.b	ENSGT00390000000046	ENSGT00940000163077	ENSGT00940000155525	ENSGT00940000158658	ENSGT00940000176198	ENSGT00390000008787.b	ENSGT00390000008978 #28	ENSGT00940000158482 #29	ENSGT00940000157425.B #31	ENSGT00730000111063 #24	ENSGT00940000164222	ENSGT01030000234641.a.b #21	ENSGT00940000153430.a.b #22	ENSGT00940000155493	ENSGT00940000165086.b	ENSGT00940000157051	ENSGT00940000162185	ENSGT00720000108792.A	ENSGT00940000162844	ENSGT00940000156782.c	ENSGT00940000161552	ENSGT00940000161907	ENSGT00950000183132.B	ENSGT00390000003094	ENSGT00950000183037.B.a	ENSGT00950000182992.a.b.a.a	ENSGT00940000157736	ENSGT01100000263502.A.a.b
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	259	ENSGT00940000156602.c #10	ENSGT01050000244968.d.t	ENSGT00940000158499.d	ENSGT00390000001491.b	ENSGT00390000007221.a.b.u	ENSGT00390000000046.i	ENSGT00940000163077.e	ENSGT00940000155525.e	ENSGT00940000158658.d	ENSGT00390000008787.b.e	ENSGT00390000008978.eb #28	ENSGT00940000158482.f #29	ENSGT00940000157425.B.d #31	ENSGT00730000111063.d #24	ENSGT00940000164222.d	ENSGT00940000153430.a.b.e #22	ENSGT00940000155493.n	ENSGT00940000165086.b.k	ENSGT00940000157051.e	ENSGT00940000162185.d	ENSGT00720000108792.A.d
Salmoninae_a	ANCESTRAL SPECIES	71	ENSGT00940000156602.c #10	ENSGT01050000244968.d.t	ENSGT00940000158499.d	ENSGT00390000001491.b	ENSGT00390000007221.a.b.u	ENSGT00390000000046.i	ENSGT00940000163077.e	ENSGT00940000155525.e	ENSGT00940000158658.d	ENSGT00390000008787.b.e	ENSGT00390000008978.eb #28	ENSGT00940000158482.f #29	ENSGT00940000157425.B.d #31	ENSGT00730000111063.d #24	ENSGT00940000164222.d	ENSGT00940000153430.a.b.e #22	ENSGT00940000155493.n	ENSGT00940000165086.b.k	ENSGT00940000157051.e	ENSGT00940000162185.d	ENSGT00720000108792.A.d	ENSGT00940000156782.c.d	ENSGT00940000161552.f	ENSGT00940000161907.b	ENSGT00950000183132.B	ENSGT00950000183037.B.a.p	ENSGT00950000182992.a.b.a.a.b	ENSGT00940000157736.s	ENSGT01100000263502.A.a.b.k	ENSGT00390000000747.m	ENSGT00940000155780.g
Salmo	ANCESTRAL SPECIES	29	ENSGT00940000156602.c #10	ENSGT01050000244968.d.t	ENSGT00940000158499.d	ENSGT00390000001491.b	ENSGT00390000007221.a.b.u	ENSGT00390000000046.i	ENSGT00940000163077.e	ENSGT00940000155525.e	ENSGT00940000158658.d	ENSGT00390000008787.b.e	ENSGT00390000008978.eb #28	ENSGT00940000158482.f #29	ENSGT00940000157425.B.d #31	ENSGT00730000111063.d #24	ENSGT00940000164222.d	ENSGT00940000153430.a.b.e #22	ENSGT00940000155493.n	ENSGT00940000165086.b.k	ENSGT00940000157051.e	ENSGT00940000162185.d	ENSGT00720000108792.A.d	ENSGT00940000156782.c.d	ENSGT00940000161552.f	ENSGT00940000161907.b	ENSGT00950000183132.B	ENSGT00950000183037.B.a.p	ENSGT00950000182992.a.b.a.a.b	ENSGT00940000157736.s	ENSGT01100000263502.A.a.b.k	ENSGT00390000000747.m	ENSGT00940000155780.g
Atlantic salmon	MODERN SPECIES	9	sec23ip (ENSSSAG00000046493) #10	csgalnact2 (ENSSSAG00000046924)	ret (ENSSSAG00000046954)	si:dkey-192p21.6 (ENSSSAG00000115111)	pcbd1 (ENSSSAG00000048001)	sgpl1 (ENSSSAG00000048086)	neurog3 (ENSSSAG00000091461)	pdlim1 (ENSSSAG00000052063)	ENSSSAG00000052116	ENSSSAG00000052282	CJ084 (ENSSSAG00000052297) #28	ENSSSAG00000052308 #29	emx2 (ENSSSAG00000102331) #31	eif3a (ENSSSAG00000052342) #24	dennd10 (ENSSSAG00000052484)	prdx3 (ENSSSAG00000052515) #22	tm9sf3 (ENSSSAG00000052858)	ENSSSAG00000112293	ENSSSAG00000053193	zgc:110045 (ENSSSAG00000053224)	vwc2 (ENSSSAG00000053298)	ikzf1 (ENSSSAG00000053329)	fignl1 (ENSSSAG00000053731)	ttl (ENSSSAG00000053746)	polr1b (ENSSSAG00000053769)	cyp1b1 (ENSSSAG00000053814)	ENSSSAG00000053821	cdc42ep3 (ENSSSAG00000090820)	opn3 (ENSSSAG00000053835)	kmo (ENSSSAG00000053843)	ide (ENSSSAG00000053985)
River trout	MODERN SPECIES	35	sec23ip (ENSSTUG00000014800) #10	csgalnact2 (ENSSTUG00000014759)	ret (ENSSTUG00000014446)	si:dkey-192p21.6 (ENSSTUG00000014426)	pcbd1 (ENSSTUG00000014415)	sgpl1 (ENSSTUG00000013071)	neurog3 (ENSSTUG00000013004)	pdlim1 (ENSSTUG00000012985)	ENSSTUG00000012976	ENSSTUG00000012954	fam204a (ENSSTUG00000012934) #28	ENSSTUG00000012918 #29	emx2 (ENSSTUG00000012909) #31	eif3s10 (ENSSTUG00000010537) #24	dennd10 (ENSSTUG00000010436)	prdx3 (ENSSTUG00000010225) #22	tm9sf3 (ENSSTUG00000009130)	ENSSTUG00000009002	MOCOS (ENSSTUG00000008824)	zgc:110045 (ENSSTUG00000008769)	vwc2 (ENSSTUG00000008765)	ikzf1 (ENSSTUG00000008514)	ttl (ENSSTUG00000008449)	polr1b (ENSSTUG00000008406)	cyp1b1 (ENSSTUG00000008398)	ENSSTUG00000008390	cdc42ep3 (ENSSTUG00000008387)	opn3 (ENSSTUG00000008364)	kmo (ENSSTUG00000008286)	ide (ENSSTUG00000007896)	marchf5 (ENSSTUG00000007796)
Oncorhynchus	ANCESTRAL SPECIES	2	ENSGT01050000244968.d.t	ENSGT00940000158499.d	ENSGT00390000001491.b	ENSGT01000000220794	ENSGT00390000000046.i	ENSGT00940000163077.e	ENSGT00940000155525.e	ENSGT00940000158658.d	ENSGT00970000193381.a.a.c.b.a.a.a.b	ENSGT00390000008787.b.e	ENSGT00390000008978.eb #28	ENSGT00940000158482.f #29	ENSGT00940000157425.B.d #31	ENSGT00730000111063.d #24	ENSGT00940000164222.d	ENSGT00940000153430.a.b.e #22	ENSGT00940000155493.n	ENSGT00940000165086.b.k	ENSGT00940000157051.e	ENSGT00390000008457.d.b	ENSGT00940000162185.d	ENSGT00720000108792.A.d	ENSGT00940000156782.c.d	ENSGT00940000161552.f	ENSGT00940000161907.b	ENSGT00950000183132.B.j	ENSGT00950000183037.B.a.p	ENSGT00950000182992.a.b.a.a.b	ENSGT00940000157736.s	ENSGT01100000263502.A.a.b.k	ENSGT00390000000747.m
Oncorhynchus_a	ANCESTRAL SPECIES	1	ENSGT01050000244968.d.t	ENSGT00940000158499.d	ENSGT00390000001491.b	ENSGT01000000220794	ENSGT00390000000046.i	ENSGT00940000163077.e	ENSGT00940000155525.e	ENSGT00940000158658.d	ENSGT00970000193381.a.a.c.b.a.a.a.b	ENSGT00390000008787.b.e	ENSGT00390000008978.eb #28	ENSGT00940000158482.f #29	ENSGT00940000157425.B.d #31	ENSGT00730000111063.d #24	ENSGT00940000164222.d	ENSGT00940000153430.a.b.e #22	ENSGT00940000155493.n	ENSGT00940000165086.b.k	ENSGT00940000157051.e	ENSGT00390000008457.d.b	ENSGT00940000162185.d	ENSGT00720000108792.A.d	ENSGT00940000156782.c.d	ENSGT00940000161552.f	ENSGT00940000161907.b	ENSGT00950000183132.B.j	ENSGT00950000183037.B.a.p	ENSGT00950000182992.a.b.a.a.b	ENSGT00940000157736.s	ENSGT01100000263502.A.a.b.k	ENSGT00390000000747.m
Coho salmon	MODERN SPECIES	24	sec23ip (ENSOKIG00005003665) #10	csgalnact2 (ENSOKIG00005003687)	ret (ENSOKIG00005003733)	si:dkey-192p21.6 (ENSOKIG00005003933)	ENSOKIG00005003940	sgpl1 (ENSOKIG00005004045)	neurog3 (ENSOKIG00005005348)	pdlim1 (ENSOKIG00005005356)	ENSOKIG00005005361	ENSOKIG00005005375	fam204a (ENSOKIG00005005383) #28	ENSOKIG00005005396 #29	emx2 (ENSOKIG00005005402) #31	eif3s10 (ENSOKIG00005005436) #24	dennd10 (ENSOKIG00005005606)	prdx3 (ENSOKIG00005005630) #22	tm9sf3 (ENSOKIG00005005977)	ENSOKIG00005007301	MOCOS (ENSOKIG00005007359)	cdc26 (ENSOKIG00005007436)	zgc:110045 (ENSOKIG00005007446)	vwc2 (ENSOKIG00005007468)	ikzf1 (ENSOKIG00005007494)	ENSOKIG00005007711	ttl (ENSOKIG00005007720)	polr1b (ENSOKIG00005007736)	cyp1b1 (ENSOKIG00005007761)	ENSOKIG00005007780	cdc42ep3 (ENSOKIG00005007795)	opn3 (ENSOKIG00005007801)	kmo (ENSOKIG00005007831)
Chinook salmon	MODERN SPECIES	30	ret (ENSOTSG00005041959)	ENSOTSG00005042034	ENSOTSG00005042036	sgpl1 (ENSOTSG00005042037)	neurog3 (ENSOTSG00005043080)	pdlim1 (ENSOTSG00005043081)	ENSOTSG00005043083	ENSOTSG00005043084	ENSOTSG00005043086	fam204a (ENSOTSG00005043088) #28	ENSOTSG00005043089 #29	ENSOTSG00005043090	emx2 (ENSOTSG00005043092) #31	eif3s10 (ENSOTSG00005043102) #24	dennd10 (ENSOTSG00005043174)	prdx3 (ENSOTSG00005043176) #22	tm9sf3 (ENSOTSG00005043202)	ENSOTSG00005043952	MOCOS (ENSOTSG00005043956)	cdc26 (ENSOTSG00005043960)	zgc:110045 (ENSOTSG00005043961)	vwc2 (ENSOTSG00005043962)	ikzf1 (ENSOTSG00005043964)	fignl1 (ENSOTSG00005044039)	ttl (ENSOTSG00005044040)	polr1b (ENSOTSG00005044043)	cyp1b1 (ENSOTSG00005044045)	ENSOTSG00005044046	cdc42ep3 (ENSOTSG00005044047)	opn3 (ENSOTSG00005044048)	kmo (ENSOTSG00005044050)
Rainbow trout	MODERN SPECIES		ret (ENSOMYG00000028196)	si:dkey-192p21.6 (ENSOMYG00000028400)	ENSOMYG00000051007	ENSOMYG00000028461	sgpl1 (ENSOMYG00000029163)	neurog3 (ENSOMYG00000051762)	pdlim1 (ENSOMYG00000030714)	ENSOMYG00000039351	ENSOMYG00000068111	ENSOMYG00000030903	fam204a (ENSOMYG00000030921) #28	ENSOMYG00000030938 #29	emx2 (ENSOMYG00000030942) #31	eif3s10 (ENSOMYG00000031028) #24	dennd10 (ENSOMYG00000031064)	prdx3 (ENSOMYG00000031080) #22	tm9sf3 (ENSOMYG00000015203)	si:ch211-117n7.7 (ENSOMYG00000015276)	ENSOMYG00000015330	ENSOMYG00000064272	zgc:110045 (ENSOMYG00000015384)	vwc2 (ENSOMYG00000015399)	ikzf1 (ENSOMYG00000015446)	ENSOMYG00000015776	ttl (ENSOMYG00000015780)	polr1b (ENSOMYG00000015804)	cyp1b1 (ENSOMYG00000015863)	ENSOMYG00000015876	ENSOMYG00000015884	cdc42ep3 (ENSOMYG00000015888)	opn3 (ENSOMYG00000015891)
Huchen	MODERN SPECIES	121	mcmbp (ENSHHUG00000032410) #11	sec23ip (ENSHHUG00000032479) #10	csgalnact2 (ENSHHUG00000032650)	ret (ENSHHUG00000032657)	si:dkey-192p21.6 (ENSHHUG00000032704)	pcbd1 (ENSHHUG00000032713)	sgpl1 (ENSHHUG00000032724)	neurog3 (ENSHHUG00000032753)	ENSHHUG00000032754	ENSHHUG00000032828	fam204a (ENSHHUG00000032839) #28	ENSHHUG00000032842 #29	emx2 (ENSHHUG00000032843) #31	eif3s10 (ENSHHUG00000032853) #24	dennd10 (ENSHHUG00000032912)	prdx3 (ENSHHUG00000032914) #22	tm9sf3 (ENSHHUG00000032996)	ENSHHUG00000033125	MOCOS (ENSHHUG00000033169)	ENSHHUG00000033231	vwc2 (ENSHHUG00000033243)
Salmoninae	ANCESTRAL SPECIES	307	ENSGT01050000244968.d.s	ENSGT00940000158499.c	ENSGT00390000007221.a.b.v	ENSGT00390000000046.j	ENSGT00940000163077.f	ENSGT00940000155525.f	ENSGT00940000158658.c	ENSGT00940000176198	ENSGT00390000008787.b.f	ENSGT00390000008978.db #28	ENSGT00940000158482.e #29	ENSGT00940000157425.B.c #31	ENSGT00730000111063.c #24	ENSGT00940000164222.c	ENSGT01030000234641.a.b #21	ENSGT00940000153430.a.b.f #22	ENSGT00940000155493.m	ENSGT00940000165086.b.l	ENSGT01100000263515.a.b.a.b.b.k.a.b	ENSGT00940000157051.f	ENSGT00940000162185.c	ENSGT00720000108792.A.c.b	ENSGT00940000162844	ENSGT00940000156782.c.c	ENSGT00940000161552.e	ENSGT00940000161907.a	ENSGT01030000236031
Huchen	MODERN SPECIES	979												eif3s10 (ENSHHUG00000034940) #24	dennd10 (ENSHHUG00000035173)	ENSHHUG00000035186	sfxn4 (ENSHHUG00000035190) #21	prdx3 (ENSHHUG00000035198) #22	tm9sf3 (ENSHHUG00000035216)	ENSHHUG00000035245	ENSHHUG00000035268	MOCOS (ENSHHUG00000035292)	zgc:110045 (ENSHHUG00000035331)	vwc2 (ENSHHUG00000035346)	SPATA48 (ENSHHUG00000035350)	ikzf1 (ENSHHUG00000035360)	fignl1 (ENSHHUG00000035419)	ttl (ENSHHUG00000035422)	polr1b (ENSHHUG00000035432)	nanp (ENSHHUG00000035471)	cyp1b1 (ENSHHUG00000035473)	ENSHHUG00000035476
Salmoninae_a	ANCESTRAL SPECIES	16	ENSGT01050000244968.d.s	ENSGT00940000158499.c	ENSGT00390000007221.a.b.v	ENSGT00390000000046.j	ENSGT00940000163077.f	ENSGT00940000155525.f	ENSGT00940000158658.c	ENSGT00940000176198	ENSGT00390000008787.b.f	ENSGT00390000008978.db #28	ENSGT00940000158482.e #29	ENSGT00940000157425.B.c #31	ENSGT00730000111063.c #24	ENSGT00940000164222.c	ENSGT01030000234641.a.b #21	ENSGT00940000153430.a.b.f #22	ENSGT00940000155493.m	ENSGT00940000165086.b.l	ENSGT01100000263515.a.b.a.b.b.k.a.b	ENSGT00940000157051.f	ENSGT00940000162185.c	ENSGT00720000108792.A.c.b	ENSGT00940000162844	ENSGT00940000156782.c.c	ENSGT00940000161552.e	ENSGT00940000161907.a	ENSGT01030000236031	ENSGT00390000003094	ENSGT00950000183037.B.a.o	ENSGT00950000182992.a.b.a.a.a	ENSGT00940000157736.t
Salmo	ANCESTRAL SPECIES	23	ENSGT00940000156602.d #10	ENSGT01050000244968.d.s	ENSGT00940000158499.c	ENSGT00390000007221.a.b.v	ENSGT00390000000046.j	ENSGT00940000163077.f	ENSGT00940000155525.f	ENSGT00940000158658.c	ENSGT00390000008787.b.f	ENSGT00390000008978.db #28	ENSGT00940000158482.e #29	ENSGT00940000157425.B.c #31	ENSGT00730000111063.c #24	ENSGT00940000164222.c	ENSGT01030000234641.a.b #21	ENSGT00940000153430.a.b.f #22	ENSGT00940000155493.m	ENSGT00940000165086.b.l	ENSGT01100000263515.a.b.a.b.b.k.a.b	ENSGT00940000157051.f	ENSGT00940000162185.c	ENSGT00720000108792.A.c.b	ENSGT00940000162844	ENSGT00940000156782.c.c	ENSGT00940000161552.e	ENSGT00940000161907.a	ENSGT01030000236031	ENSGT00390000003094	ENSGT00950000183037.B.a.o	ENSGT00950000182992.a.b.a.a.a	ENSGT00940000157736.t
Atlantic salmon	MODERN SPECIES		ENSSSAG00000006587	phs (ENSSSAG00000006603)	sgpl1 (ENSSSAG00000006665)	neurog3 (ENSSSAG00000006902)	pdlim1 (ENSSSAG00000006903)	ENSSSAG00000006922	ENSSSAG00000006986	fam204a (ENSSSAG00000006993) #28	rab11fip2 (ENSSSAG00000007000) #29	ENSSSAG00000095718	emx2 (ENSSSAG00000007004) #31	eif3s10 (ENSSSAG00000007047) #24	ENSSSAG00000094938	dennd10 (ENSSSAG00000007951)	sfxn4 (ENSSSAG00000007961) #21	PRDX3 (ENSSSAG00000007976) #22	tm9sf3 (ENSSSAG00000008049)	ENSSSAG00000053156	ENSSSAG00000008210	ENSSSAG00000008280	zgc:110045 (ENSSSAG00000008314)	vwc2 (ENSSSAG00000008379)	SPATA48 (ENSSSAG00000008381)	ikzf1 (ENSSSAG00000008390)	fignl1 (ENSSSAG00000008559)	ttl (ENSSSAG00000096737)	ENSSSAG00000008577	nanp (ENSSSAG00000084980)	cyp1b1 (ENSSSAG00000115170)	ENSSSAG00000008595	cdc42ep3 (ENSSSAG00000087269)
River trout	MODERN SPECIES	9	sec23ip (ENSSTUG00000010988) #10	csgalnact2 (ENSSTUG00000002470)	ret (ENSSTUG00000002623)	pcbd1 (ENSSTUG00000004308)	sgpl1 (ENSSTUG00000004366)	neurog3 (ENSSTUG00000005003)	pdlim1 (ENSSTUG00000005015)	ENSSTUG00000005092	ENSSTUG00000005245	ENSSTUG00000005266	RAB11FIP2 (ENSSTUG00000005274) #29	emx2 (ENSSTUG00000005282) #31	eif3s10 (ENSSTUG00000005360) #24	dennd10 (ENSSTUG00000007388)	sfxn4 (ENSSTUG00000007408) #21	prdx3 (ENSSTUG00000007420) #22	tm9sf3 (ENSSTUG00000007464)	ENSSTUG00000007523	MOCOS (ENSSTUG00000007573)	ENSSTUG00000007624	zgc:110045 (ENSSTUG00000007635)	vwc2 (ENSSTUG00000007652)	SPATA48 (ENSSTUG00000007662)	ikzf1 (ENSSTUG00000007682)	fignl1 (ENSSTUG00000007953)	ttl (ENSSTUG00000007958)	nanp (ENSSTUG00000007979)	cyp1b1 (ENSSTUG00000007983)	ENSSTUG00000007996	cdc42ep3 (ENSSTUG00000008031)	opn3 (ENSSTUG00000008035)
Oncorhynchus	ANCESTRAL SPECIES	17	ENSGT01050000244968.d.s	ENSGT00940000158499.c	ENSGT00390000007221.a.b.v	ENSGT00390000000046.j	ENSGT00940000163077.f	ENSGT00940000155525.f	ENSGT00940000158658.c	ENSGT00940000176198	ENSGT00390000008787.b.f	ENSGT00390000008978.db #28	ENSGT00940000158482.e #29	ENSGT00940000157425.B.c #31	ENSGT00730000111063.c #24	ENSGT00940000164222.c	ENSGT01030000234641.a.b #21	ENSGT00940000153430.a.b.f #22	ENSGT00940000155493.m	ENSGT00940000165086.b.l	ENSGT01100000263515.a.b.a.b.b.k.a.b	ENSGT00940000157051.f	ENSGT00940000162185.c	ENSGT00720000108792.A.c.b	ENSGT00940000175717	ENSGT00940000162844	ENSGT00940000156782.c.c	ENSGT00940000161552.e	ENSGT00940000161907.a	ENSGT01030000236031	ENSGT00390000003094	ENSGT00950000183037.B.a.o	ENSGT00950000182992.a.b.a.a.a
Rainbow trout	MODERN SPECIES	15	csgalnact2 (ENSOMYG00000043233)	ret (ENSOMYG00000043313)	pcbd1 (ENSOMYG00000043643)	sgpl1 (ENSOMYG00000043767)	neurog3 (ENSOMYG00000044186)	pdlim1 (ENSOMYG00000044187)	ENSOMYG00000044192	ENSOMYG00000077884	ENSOMYG00000044197	fam204a (ENSOMYG00000054669) #28	ENSOMYG00000044202 #29	emx2 (ENSOMYG00000044204) #31	eif3s10 (ENSOMYG00000044248) #24	dennd10 (ENSOMYG00000044767)	sfxn4 (ENSOMYG00000044778) #21	prdx3 (ENSOMYG00000044795) #22	tm9sf3 (ENSOMYG00000044819)	ENSOMYG00000070145	ENSOMYG00000044924	ENSOMYG00000044912	ENSOMYG00000065832	zgc:110045 (ENSOMYG00000044960)	vwc2 (ENSOMYG00000044970)	ENSOMYG00000044982	ENSOMYG00000073036	ENSOMYG00000055349	ikzf1 (ENSOMYG00000044996)	fignl1 (ENSOMYG00000045107)	ttl (ENSOMYG00000045112)	nanp (ENSOMYG00000077849)	cyp1b1 (ENSOMYG00000045123)
Oncorhynchus_a	ANCESTRAL SPECIES	13	ENSGT01050000244968.d.s	ENSGT00940000158499.c	ENSGT00390000007221.a.b.v	ENSGT00390000000046.j	ENSGT00940000163077.f	ENSGT00940000155525.f	ENSGT00940000158658.c	ENSGT00940000176198	ENSGT00390000008787.b.f	ENSGT00390000008978.db #28	ENSGT00940000158482.e #29	ENSGT00940000157425.B.c #31	ENSGT00730000111063.c #24	ENSGT00940000164222.c	ENSGT01030000234641.a.b #21	ENSGT00940000153430.a.b.f #22	ENSGT00940000155493.m	ENSGT00940000165086.b.l	ENSGT01100000263515.a.b.a.b.b.k.a.b	ENSGT00940000157051.f	ENSGT00940000162185.c	ENSGT00720000108792.A.c.b	ENSGT00940000162844	ENSGT00940000156782.c.c	ENSGT00940000161552.e	ENSGT00940000161907.a	ENSGT01030000236031	ENSGT00390000003094	ENSGT00950000183037.B.a.o	ENSGT00950000182992.a.b.a.a.a	ENSGT00940000157736.t
Coho salmon	MODERN SPECIES	2	sec23ip (ENSOKIG00005022701) #10	csgalnact2 (ENSOKIG00005022501)	ret (ENSOKIG00005021999)	pcbd1 (ENSOKIG00005021953)	sgpl1 (ENSOKIG00005021787)	neurog3 (ENSOKIG00005021719)	pdlim1 (ENSOKIG00005016721)	ENSOKIG00005016714	ENSOKIG00005016704	fam204a (ENSOKIG00005016668) #28	RAB11FIP2 (ENSOKIG00005016660) #29	emx2 (ENSOKIG00005016649) #31	eif3s10 (ENSOKIG00005016289) #24	dennd10 (ENSOKIG00005016234)	sfxn4 (ENSOKIG00005016216) #21	prdx3 (ENSOKIG00005016178) #22	tm9sf3 (ENSOKIG00005016025)	ENSOKIG00005015930	ENSOKIG00005015915	MOCOS (ENSOKIG00005015830)	zgc:110045 (ENSOKIG00005015792)	vwc2 (ENSOKIG00005015778)	SPATA48 (ENSOKIG00005015762)	ikzf1 (ENSOKIG00005015493)	fignl1 (ENSOKIG00005015470)	ttl (ENSOKIG00005015448)	ENSOKIG00005015435	nanp (ENSOKIG00005015432)	cyp1b1 (ENSOKIG00005015422)	ENSOKIG00005015405	cdc42ep3 (ENSOKIG00005015398)
Chinook salmon	MODERN SPECIES		sec23ip (ENSOTSG00005002160) #10	csgalnact2 (ENSOTSG00005004352)	ret (ENSOTSG00005004354)	pcbd1 (ENSOTSG00005004425)	sgpl1 (ENSOTSG00005004433)	neurog3 (ENSOTSG00005006561)	ENSOTSG00005006562	ENSOTSG00005006568	ENSOTSG00005006570	fam204a (ENSOTSG00005006572) #28	RAB11FIP2 (ENSOTSG00005006574) #29	emx2 (ENSOTSG00005006575) #31	eif3s10 (ENSOTSG00005006585) #24	dennd10 (ENSOTSG00005008921)	sfxn4 (ENSOTSG00005008922) #21	prdx3 (ENSOTSG00005008923) #22	tm9sf3 (ENSOTSG00005009018)	ENSOTSG00005010136	ENSOTSG00005010139	MOCOS (ENSOTSG00005010140)	zgc:110045 (ENSOTSG00005010141)	vwc2 (ENSOTSG00005010143)	ikzf1 (ENSOTSG00005010144)	fignl1 (ENSOTSG00005010405)	ttl (ENSOTSG00005010406)	ENSOTSG00005010407	nanp (ENSOTSG00005010408)	cyp1b1 (ENSOTSG00005010409)	ENSOTSG00005010410	ENSOTSG00005010411	cdc42ep3 (ENSOTSG00005010412)
Northern pike	MODERN SPECIES	5	ret (ENSELUG00000020668)	si:dkey-192p21.6 (ENSELUG00000020576)	pcbd1 (ENSELUG00000028404)	sgpl1 (ENSELUG00000020538)	neurog3 (ENSELUG00000020507)	pdlim1 (ENSELUG00000020494)	ENSELUG00000001214	ENSELUG00000020467	ENSELUG00000020327	fam204a (ENSELUG00000020311) #28	ENSELUG00000020239 #29	emx2 (ENSELUG00000020231) #31	eif3s10 (ENSELUG00000020201) #24	dennd10 (ENSELUG00000020177)	sfxn4 (ENSELUG00000020128) #21	prdx3 (ENSELUG00000000881) #22	tm9sf3 (ENSELUG00000019970)	si:ch211-117n7.7 (ENSELUG00000019869)	MOCOS (ENSELUG00000019797)	zgc:110045 (ENSELUG00000019784)	vwc2 (ENSELUG00000019741)	ikzf1 (ENSELUG00000019717)	fignl1 (ENSELUG00000030624)	ttl (ENSELUG00000019652)	polr1b (ENSELUG00000019627)	nanp (ENSELUG00000019586)	cyp1b1 (ENSELUG00000019569)	ENSELUG00000019534	cdc42ep3 (ENSELUG00000019460)	ENSELUG00000030007	ENSELUG00000027891
Osteoglossiformes	ANCESTRAL SPECIES	622															ENSGT00730000111063 #24	ENSGT00940000153430.a.b #22	ENSGT00940000155493
Asian bonytongue	MODERN SPECIES	23	ENSSFOG00015005888	valopa (ENSSFOG00015028454)	nkx6.2 (ENSSFOG00015005965)	INPP5A (ENSSFOG00015005987)	PWWP2B (ENSSFOG00015027814)	STK32C (ENSSFOG00015006082)	ENSSFOG00015006147	ENSSFOG00015006171	tspan14 (ENSSFOG00015006187)	ENSSFOG00015030926	ENSSFOG00015006266	fam204a (ENSSFOG00015006287) #28	RAB11FIP2 (ENSSFOG00015006324) #29	emx2 (ENSSFOG00015006336) #31	eif3s10 (ENSSFOG00015006358) #24	prdx3 (ENSSFOG00015006374) #22	trmt2b (ENSSFOG00015006392)	hif1an (ENSSFOG00015029177)	cuedc2 (ENSSFOG00015006424)	tm9sf3 (ENSSFOG00015006438)	tysnd1 (ENSSFOG00015006486)	lrit1a (ENSSFOG00015006493)	rgra (ENSSFOG00015006511)	chata (ENSSFOG00015006521)	zgc:153142 (ENSSFOG00015006554)
P. kingsleyae	MODERN SPECIES	11	GREM2 (ENSPKIG00000000347)	RGS7 (ENSPKIG00000019718)	cyp26c1 (ENSPKIG00000019684)	slc22a15 (ENSPKIG00000019581)	ENSPKIG00000019555	adob (ENSPKIG00000019545)	rtkn2 (ENSPKIG00000019526)	ENSPKIG00000019439	TMEM26 (ENSPKIG00000019419)	ENSPKIG00000019396	ANK3 (ENSPKIG00000019335)	SLC16A9 (ENSPKIG00000019295)	PCDH15 (ENSPKIG00000019136)	ENSPKIG00000019080	eif3s10 (ENSPKIG00000019034) #24	prdx3 (ENSPKIG00000019015) #22	tm9sf3 (ENSPKIG00000018941)	tysnd1 (ENSPKIG00000018909)	hif1an (ENSPKIG00000018875)	rgra (ENSPKIG00000018846)	cuedc2 (ENSPKIG00000018810)	emx2 (ENSPKIG00000018768) #31	RAB11FIP2 (ENSPKIG00000018743) #29	ENSPKIG00000018724	fam204a (ENSPKIG00000018710) #28	ENSPKIG00000018680	tspan14 (ENSPKIG00000018636)	ENSPKIG00000018601	STK32C (ENSPKIG00000018578)	PWWP2B (ENSPKIG00000018566)	INPP5A (ENSPKIG00000018494)
Spotted gar	MODERN SPECIES	671	gpr27 (ENSLOCG00000018245)	prok2 (ENSLOCG00000009991)	ENSLOCG00000018244	rybpa (ENSLOCG00000009980)	shq1 (ENSLOCG00000009970)	gxylt2 (ENSLOCG00000009958)	ppp4r2b (ENSLOCG00000009942)	ENSLOCG00000009926	pdzrn3b (ENSLOCG00000009917)	ENSLOCG00000009897	ENSLOCG00000009860	ENSLOCG00000009835	cntn4 (ENSLOCG00000009813)	thumpd3 (ENSLOCG00000009800)	SRGAP3 (ENSLOCG00000009772)	prdx3 (ENSLOCG00000009763) #22	sfxn4 (ENSLOCG00000009759) #21	dennd10 (ENSLOCG00000009752)	eif3s10 (ENSLOCG00000009729) #24	NANOS1 (ENSLOCG00000018243)	CACUL1 (ENSLOCG00000009720) #26	PRLHR (ENSLOCG00000018242) #27	ENSLOCG00000018241	fam204a (ENSLOCG00000009714) #28	RAB11FIP2 (ENSLOCG00000009709) #29	ENSLOCG00000009702	emx2 (ENSLOCG00000009698) #31	PDZD8 (ENSLOCG00000009680) #32	slc18a2 (ENSLOCG00000009666) #33	ENSLOCG00000009651	vax1 (ENSLOCG00000009641) #35
Reedfish	MODERN SPECIES	413	eif3s10 (ENSECRG00000015983) #24	dennd10 (ENSECRG00000016071)	bag3 (ENSECRG00000016092) #13	inpp5f (ENSECRG00000016113) #12	mcmbp (ENSECRG00000016146) #11	sec23ip (ENSECRG00000016166) #10	PLPP4 (ENSECRG00000016201) #9	wdr11 (ENSECRG00000016249)	fgfr2 (ENSECRG00000016325)	ATE1 (ENSECRG00000016574)	NSMCE4A (ENSECRG00000016642)	khdc4 (ENSECRG00000016689)	tial1 (ENSECRG00000016759)	RGS10 (ENSECRG00000016801) #19	GRK5 (ENSECRG00000016876) #20	prdx3 (ENSECRG00000017753) #22	ENSECRG00000017764	ENSECRG00000017789	ENSECRG00000017822	ENSECRG00000017832	ENSECRG00000017843	ENSECRG00000017860	ENSECRG00000017883	ENSECRG00000017897	ENSECRG00000017928
Elephant shark	MODERN SPECIES	1631											BAG3 (ENSCMIG00000009305) #13	tial1 (ENSCMIG00000009377)	RGS10 (ENSCMIG00000009664) #19	GRK5 (ENSCMIG00000009731) #20	lsm1 (ENSCMIG00000010068)	prdx3 (ENSCMIG00000010074) #22	ENSCMIG00000010077	acsl5 (ENSCMIG00000010195)	zdhhc6 (ENSCMIG00000010686)	vti1a (ENSCMIG00000010713)	tcf7l2 (ENSCMIG00000010743)	ENSCMIG00000010775	ENSCMIG00000010780	ENSCMIG00000010796	nrap (ENSCMIG00000010820)	ENSCMIG00000010856	ENSCMIG00000010858	ENSCMIG00000010860	ENSCMIG00000010865	NHLRC2 (ENSCMIG00000010877)	adrb1 (ENSCMIG00000010889)
Cyclostomata	ANCESTRAL SPECIES																	ENSGT00940000153430.a.b #22
Lamprey	MODERN SPECIES	4050																prdx3 (ENSPMAG00000001457) #22
Hagfish	MODERN SPECIES	62													mkln1 (ENSEBUG00000009556)	ENSEBUG00000000499	ENSEBUG00000000673	prdx3 (ENSEBUG00000012409) #22	ENSEBUG00000003338	DNAJB9 (ENSEBUG00000004735)	wnt5b (ENSEBUG00000008708)	ENSEBUG00000014782	ENSEBUG00000014010	net1 (ENSEBUG00000011482)	vps29 (ENSEBUG00000009262)	ENSEBUG00000004819
Ciona	ANCESTRAL SPECIES																	ENSGT00940000153430.a.b #22
Ciona intestinalis	MODERN SPECIES	573								ENSCING00000017577	ENSCING00000001117	ENSCING00000009362	ENSCING00000017575	ENSCING00000019543	ENSCING00000024552	ENSCING00000023237	zf(traf/ring)-3 (ENSCING00000020502)	ENSCING00000019865 #22	ENSCING00000019116	ENSCING00000024137	ENSCING00000021670
Ciona savignyi	MODERN SPECIES	289	ENSCSAVG00000001625	ENSCSAVG00000001623	ENSCSAVG00000001620	ENSCSAVG00000001619	ENSCSAVG00000001409	ENSCSAVG00000001331	ENSCSAVG00000001329	ENSCSAVG00000001328	ENSCSAVG00000001283	ENSCSAVG00000001269	ENSCSAVG00000001268	ENSCSAVG00000001227	ENSCSAVG00000001223	ENSCSAVG00000001218	ENSCSAVG00000001217	ENSCSAVG00000001209 #22	ENSCSAVG00000001205	ENSCSAVG00000001197	ENSCSAVG00000001190	ENSCSAVG00000001187	ENSCSAVG00000001184	ENSCSAVG00000001170	ENSCSAVG00000001165	ENSCSAVG00000001142	ENSCSAVG00000001120	ENSCSAVG00000001119	ENSCSAVG00000001118	ENSCSAVG00000001116	ENSCSAVG00000001111	ENSCSAVG00000001109	ENSCSAVG00000001069
Ecdysozoa	ANCESTRAL SPECIES																	ENSGT00940000153430.a.b #22
Fruitfly	MODERN SPECIES	19	CG43175 (FBgn0262794)	CG14325 (FBgn0038531)	AttD (FBgn0038530)	CG14323 (FBgn0038529)	CG14326 (FBgn0038528)	CG14324 (FBgn0038527)	CG14327 (FBgn0038526)	CG34281 (FBgn0085310)	Edg91 (FBgn0004554)	CG14329 (FBgn0038525)	sll (FBgn0038524)	CG7606 (FBgn0040565)	Sgs5 (FBgn0003375)	Sgs5bis (FBgn0038523)	Hmx (FBgn0264005)	Prx3 (FBgn0038519) #22	SF1 (FBgn0025571)	l(3)07882 (FBgn0010926)	P5cr-2 (FBgn0038516)	CG5823 (FBgn0038515)	Dscam3 (FBgn0261046)	CG14330 (FBgn0038512)	Eh (FBgn0000564)	CG14331 (FBgn0038510)	CG44090 (FBgn0264899)	cysu (FBgn0038511)	CG14332 (FBgn0038509)	CG42835 (FBgn0262024)	CG42834 (FBgn0262023)	CG33333 (FBgn0053333)	CG5866 (FBgn0038508)
Caenorhabditis elegans	MODERN SPECIES	2	mnp-1 (WBGene00007139)	ckb-1 (WBGene00000511)	ckb-2 (WBGene00000512)	ckb-3 (WBGene00000513)	pals-26 (WBGene00007131)	B0284.3 (WBGene00007133)	pals-27 (WBGene00007132)	pals-28 (WBGene00007134)	R07E5.4 (WBGene00011112)	R07E5.5 (WBGene00011113)	R07E5.6 (WBGene00011114)	R07E5.15 (WBGene00011120)	R07E5.17 (WBGene00011121)	snfc-5 (WBGene00011111)	rnp-4 (WBGene00004387)	prdx-3 (WBGene00011110) #22	gpch-1 (WBGene00011109)	mpc-1 (WBGene00011119)	R07E5.11 (WBGene00011117)	pdcd-2 (WBGene00011116)	R07E5.19 (WBGene00303105)	R07E5.7 (WBGene00011115)	cku-80 (WBGene00000520)	C28A5.6 (WBGene00007791)	C28A5.1 (WBGene00007788)	C28A5.2 (WBGene00007789)	nex-3 (WBGene00003590)	ceh-43 (WBGene00000463)	ndg-4 (WBGene00003577)	F56F3.4 (WBGene00010155)	ifet-1 (WBGene00004132)